ccrud_RS06425 d1d05c2b05d4579b6fa77ed72839bc09 197 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 181 1.6E-55 T 14-09-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06425 d1d05c2b05d4579b6fa77ed72839bc09 197 PANTHER PTHR11670 1 193 1.1E-88 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06425 d1d05c2b05d4579b6fa77ed72839bc09 197 Pfam PF00694 Aconitase C-terminal domain 1 113 5.4E-25 T 14-09-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06425 d1d05c2b05d4579b6fa77ed72839bc09 197 PANTHER PTHR11670:SF27 1 193 1.1E-88 T 14-09-2016 ccrud_RS06425 d1d05c2b05d4579b6fa77ed72839bc09 197 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 192 38.478 T 14-09-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06425 d1d05c2b05d4579b6fa77ed72839bc09 197 Gene3D G3DSA:3.20.19.10 1 188 6.1E-36 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel ccrud_RS06425 d1d05c2b05d4579b6fa77ed72839bc09 197 SUPERFAMILY SSF52016 1 188 4.71E-51 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel ccrud_RS01065 3992381cc64b43cfecdf63241c637651 265 SUPERFAMILY SSF52540 46 243 2.72E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01065 3992381cc64b43cfecdf63241c637651 265 PANTHER PTHR24220:SF117 19 29 4.5E-78 T 14-09-2016 ccrud_RS01065 3992381cc64b43cfecdf63241c637651 265 PANTHER PTHR24220 45 246 4.5E-78 T 14-09-2016 ccrud_RS01065 3992381cc64b43cfecdf63241c637651 265 PANTHER PTHR24220:SF117 45 246 4.5E-78 T 14-09-2016 ccrud_RS01065 3992381cc64b43cfecdf63241c637651 265 Pfam PF00005 ABC transporter 48 178 8.7E-20 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS01065 3992381cc64b43cfecdf63241c637651 265 PANTHER PTHR24220 19 29 4.5E-78 T 14-09-2016 ccrud_RS01065 3992381cc64b43cfecdf63241c637651 265 SMART SM00382 57 231 6.0E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS01065 3992381cc64b43cfecdf63241c637651 265 Gene3D G3DSA:3.40.50.300 45 244 2.2E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07080 9e0420625a280e17fe6aaf6f65cbf78a 271 PANTHER PTHR24220 18 258 1.6E-102 T 14-09-2016 ccrud_RS07080 9e0420625a280e17fe6aaf6f65cbf78a 271 SMART SM00382 42 238 8.5E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS07080 9e0420625a280e17fe6aaf6f65cbf78a 271 Pfam PF00005 ABC transporter 33 189 9.1E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS07080 9e0420625a280e17fe6aaf6f65cbf78a 271 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 17 258 6.2E-91 T 14-09-2016 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 ccrud_RS07080 9e0420625a280e17fe6aaf6f65cbf78a 271 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS07080 9e0420625a280e17fe6aaf6f65cbf78a 271 Gene3D G3DSA:3.40.50.300 16 250 7.7E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07080 9e0420625a280e17fe6aaf6f65cbf78a 271 PANTHER PTHR24220:SF408 18 258 1.6E-102 T 14-09-2016 ccrud_RS07080 9e0420625a280e17fe6aaf6f65cbf78a 271 SUPERFAMILY SSF52540 16 248 3.1E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 SUPERFAMILY SSF48019 247 365 9.35E-18 T 14-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 Pfam PF13177 DNA polymerase III, delta subunit 17 176 1.5E-37 T 14-09-2016 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 SMART SM00382 34 177 4.8E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 Gene3D G3DSA:1.10.8.60 165 242 5.0E-17 T 14-09-2016 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 PANTHER PTHR11669:SF0 2 375 3.1E-137 T 14-09-2016 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 Gene3D G3DSA:1.20.272.10 249 361 3.7E-14 T 14-09-2016 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 2 360 2.3E-110 T 14-09-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 PANTHER PTHR11669 2 375 3.1E-137 T 14-09-2016 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 Gene3D G3DSA:3.40.50.300 13 164 2.6E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 PANTHER PTHR11669:SF0 416 470 3.1E-137 T 14-09-2016 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 PANTHER PTHR11669 416 470 3.1E-137 T 14-09-2016 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 239 366 3.1E-10 T 14-09-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 ccrud_RS01275 d7570c18172dd43a3cca7d8d6b0b8486 791 SUPERFAMILY SSF52540 31 219 2.84E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 Hamap MF_01347 ATP synthase subunit beta [atpB]. 14 480 54.4 T 14-09-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 SUPERFAMILY SSF52540 94 368 2.06E-85 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 Gene3D G3DSA:2.40.10.170 11 92 1.9E-30 T 14-09-2016 ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 19 90 4.3E-22 T 14-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 Gene3D G3DSA:3.40.50.300 93 364 8.2E-99 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 16 479 1.4E-237 T 14-09-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 SMART SM00382 161 410 1.5E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 149 362 5.0E-64 T 14-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 SUPERFAMILY SSF47917 365 480 1.2E-47 T 14-09-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 PANTHER PTHR15184:SF8 6 480 1.5E-296 T 14-09-2016 ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 PANTHER PTHR15184 6 480 1.5E-296 T 14-09-2016 ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 Gene3D G3DSA:1.10.1140.10 365 480 2.6E-46 T 14-09-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05850 ad9ba7a8b7dce1afa3aacb07775ba2e1 483 SUPERFAMILY SSF50615 16 92 9.16E-25 T 14-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 PANTHER PTHR10357 615 809 3.4E-123 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 PANTHER PTHR10357 192 353 3.4E-123 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 5 804 7.4E-282 T 14-09-2016 IPR012767 Malto-oligosyltrehalose synthase MetaCyc: PWY-2661 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 PANTHER PTHR10357 1 135 3.4E-123 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 Gene3D G3DSA:3.20.20.80 238 311 8.3E-66 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 Gene3D G3DSA:3.20.20.80 7 106 8.3E-66 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 Gene3D G3DSA:3.20.20.80 619 745 8.3E-66 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 Gene3D G3DSA:3.20.20.80 481 520 8.3E-66 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 Gene3D G3DSA:3.30.1590.10 107 222 1.5E-34 T 14-09-2016 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 Pfam PF00128 Alpha amylase, catalytic domain 33 249 6.1E-21 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 Gene3D G3DSA:1.10.150.200 341 447 3.9E-9 T 14-09-2016 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 PANTHER PTHR10357:SF166 615 809 3.4E-123 T 14-09-2016 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 PANTHER PTHR10357:SF166 192 353 3.4E-123 T 14-09-2016 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 SUPERFAMILY SSF51445 23 717 1.32E-128 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 Gene3D G3DSA:1.10.10.470 521 609 3.2E-24 T 14-09-2016 IPR013797 Maltooligosyl trehalose synthase, N-terminal MetaCyc: PWY-2661 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 PANTHER PTHR10357:SF166 1 135 3.4E-123 T 14-09-2016 ccrud_RS09260 f6f601981967a3c51a54d4619012fd9f 811 SMART SM00642 26 367 6.5E-8 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 SUPERFAMILY SSF52821 363 453 1.44E-22 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 SUPERFAMILY SSF56281 12 259 1.29E-46 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 SMART SM00849 12 192 9.4E-23 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 Pfam PF00753 Metallo-beta-lactamase superfamily 14 192 1.3E-8 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 Gene3D G3DSA:3.60.15.10 4 257 3.3E-54 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 Pfam PF00581 Rhodanese-like domain 374 452 6.3E-11 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 Gene3D G3DSA:3.40.250.10 275 348 1.0E-8 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 SMART SM00450 362 456 1.8E-14 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 SMART SM00450 263 359 2.0 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 Gene3D G3DSA:3.40.250.10 362 453 2.9E-22 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 PANTHER PTHR11935:SF9 2 252 1.5E-78 T 14-09-2016 ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 PANTHER PTHR11935:SF9 342 400 1.5E-78 T 14-09-2016 ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 SUPERFAMILY SSF52821 235 348 1.7E-13 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 PANTHER PTHR11935 2 252 1.5E-78 T 14-09-2016 ccrud_RS00265 6515a8ef773813e12a54dec369212c26 456 PANTHER PTHR11935 342 400 1.5E-78 T 14-09-2016 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 217 512 1.3E-111 T 14-09-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 171 184 1.5E-49 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 247 264 1.5E-49 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 195 223 1.5E-49 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 265 281 1.5E-49 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 354 380 1.5E-49 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 SUPERFAMILY SSF51735 16 218 6.69E-60 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 PIRSF PIRSF000110 4 514 1.4E-176 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 Gene3D G3DSA:3.30.360.10 215 512 1.9E-119 T 14-09-2016 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 30 513 7.9E-199 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 205 211 - T 14-09-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 32 215 1.2E-61 T 14-09-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 PANTHER PTHR23429:SF0 31 514 1.5E-227 T 14-09-2016 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 28 513 85.525 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 PANTHER PTHR23429 31 514 1.5E-227 T 14-09-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 Gene3D G3DSA:3.40.50.720 28 214 1.9E-66 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07625 3ff120da7c8a97ccb1d238a93aad1148 514 SUPERFAMILY SSF55347 205 512 3.92E-111 T 14-09-2016 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 SUPERFAMILY SSF46785 5 60 2.57E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 PANTHER PTHR30363 1 241 2.1E-40 T 14-09-2016 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 ProSitePatterns PS00894 DeoR-type HTH domain signature. 7 41 - T 14-09-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 Pfam PF00455 DeoR C terminal sensor domain 84 240 2.3E-22 T 14-09-2016 IPR014036 DeoR C-terminal sensor domain ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 SUPERFAMILY SSF100950 84 216 4.29E-8 T 14-09-2016 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 SMART SM00420 7 59 3.7E-18 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 Pfam PF08220 DeoR-like helix-turn-helix domain 7 61 5.7E-18 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 PANTHER PTHR30363:SF1 1 241 2.1E-40 T 14-09-2016 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 SMART SM01134 75 242 7.2E-16 T 14-09-2016 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 25 39 8.1E-10 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 39 57 8.1E-10 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS08350 29667148d338d3df7c0b918b6cc4fb15 259 Gene3D G3DSA:1.10.10.10 1 56 2.0E-11 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06080 392f97c7333bd9172f4a3a2bb4e73883 359 Gene3D G3DSA:1.20.1050.10 176 291 3.0E-23 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like ccrud_RS06080 392f97c7333bd9172f4a3a2bb4e73883 359 Gene3D G3DSA:3.40.30.10 46 175 1.5E-12 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS06080 392f97c7333bd9172f4a3a2bb4e73883 359 SUPERFAMILY SSF52833 47 115 1.57E-5 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS06080 392f97c7333bd9172f4a3a2bb4e73883 359 SUPERFAMILY SSF47616 189 338 1.27E-34 T 14-09-2016 IPR010987 Glutathione S-transferase, C-terminal-like ccrud_RS06080 392f97c7333bd9172f4a3a2bb4e73883 359 Pfam PF13410 Glutathione S-transferase, C-terminal domain 209 278 1.2E-12 T 14-09-2016 ccrud_RS06080 392f97c7333bd9172f4a3a2bb4e73883 359 PANTHER PTHR32419 13 338 1.0E-119 T 14-09-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 ccrud_RS06080 392f97c7333bd9172f4a3a2bb4e73883 359 PIRSF PIRSF015753 2 326 2.0E-113 T 14-09-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 ccrud_RS06080 392f97c7333bd9172f4a3a2bb4e73883 359 PANTHER PTHR32419:SF6 13 338 1.0E-119 T 14-09-2016 ccrud_RS06080 392f97c7333bd9172f4a3a2bb4e73883 359 Pfam PF13409 Glutathione S-transferase, N-terminal domain 66 156 8.2E-11 T 14-09-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.40.47.10 2747 2905 3.2E-29 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.40.366.10 1509 1563 9.6E-44 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.40.366.10 19 159 1.7E-24 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.40.366.10 1598 1657 9.6E-44 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.40.366.10 1281 1420 9.6E-44 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.40.366.10 261 349 1.7E-24 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Pfam PF01575 MaoC like domain 1148 1260 1.1E-20 T 14-09-2016 IPR002539 MaoC-like domain ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF52151 263 348 1.6E-21 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF52151 22 165 1.6E-21 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.10.129.10 1127 1280 2.3E-29 T 14-09-2016 IPR029069 HotDog domain ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF53901 2507 2736 1.49E-28 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF53901 2700 2912 7.53E-35 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2490 2728 1.1E-28 T 14-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PANTHER PTHR10982:SF17 20 1715 0.0 T 14-09-2016 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Pfam PF08354 Domain of unknown function (DUF1729) 807 859 6.2E-20 T 14-09-2016 IPR013565 Domain of unknown function DUF1729 GO:0004318|GO:0055114 KEGG: 00061+2.3.1.39+4.2.1.59+1.3.1.9+3.1.2.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-4381|MetaCyc: PWY-5142|MetaCyc: PWY-5147|MetaCyc: PWY-5366|MetaCyc: PWY-5367|MetaCyc: PWY-5966|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-6799|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7723|MetaCyc: PWYG-321 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.40.47.10 2517 2740 1.7E-31 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.40.47.10 2363 2400 1.7E-31 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF52151 1284 1426 1.33E-32 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF52151 1561 1646 1.33E-32 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF52151 1511 1532 1.33E-32 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 2738 2861 2.0E-24 T 14-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1286 1714 7.2E-7 T 14-09-2016 IPR020801 Polyketide synthase, acyl transferase domain ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF54637 1158 1281 5.15E-21 T 14-09-2016 IPR029069 HotDog domain ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.10.129.10 1066 1126 1.8E-7 T 14-09-2016 IPR029069 HotDog domain ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Gene3D G3DSA:3.40.50.720 2034 2263 1.8E-8 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 2632 2648 - T 14-09-2016 IPR018201 Beta-ketoacyl synthase, active site ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF51412 381 640 2.01E-11 T 14-09-2016 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF51735 2036 2260 1.78E-9 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PANTHER PTHR10982 20 1715 0.0 T 14-09-2016 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 SUPERFAMILY SSF54637 1065 1132 1.74E-5 T 14-09-2016 IPR029069 HotDog domain ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 Pfam PF00698 Acyl transferase domain 1285 1483 6.0E-34 T 14-09-2016 IPR014043 Acyl transferase ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 387 407 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 518 536 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 538 557 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 1413 1434 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 1162 1184 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 1377 1396 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 708 726 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 1184 1205 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 1275 1294 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 1296 1319 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 413 431 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS11220 63575cdf7b420af7df34e63784ec3878 2994 PRINTS PR01483 Fatty acid synthase signature 801 825 1.7E-103 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS10440 807f4a168ffea62d71c3b01cf682cd90 218 Pfam PF12836 Helix-hairpin-helix motif 155 215 3.5E-21 T 14-09-2016 ccrud_RS10440 807f4a168ffea62d71c3b01cf682cd90 218 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 156 212 1.0E-15 T 14-09-2016 IPR004509 Competence protein ComEA, helix-hairpin-helix domain ccrud_RS10440 807f4a168ffea62d71c3b01cf682cd90 218 Gene3D G3DSA:3.10.560.10 76 125 2.4E-5 T 14-09-2016 ccrud_RS10440 807f4a168ffea62d71c3b01cf682cd90 218 PANTHER PTHR21180 82 216 2.0E-29 T 14-09-2016 ccrud_RS10440 807f4a168ffea62d71c3b01cf682cd90 218 Pfam PF10531 SLBB domain 82 134 2.5E-9 T 14-09-2016 IPR019554 Soluble ligand binding domain ccrud_RS10440 807f4a168ffea62d71c3b01cf682cd90 218 Gene3D G3DSA:1.10.150.280 149 216 3.9E-19 T 14-09-2016 ccrud_RS10440 807f4a168ffea62d71c3b01cf682cd90 218 SUPERFAMILY SSF47781 150 213 3.56E-26 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 ccrud_RS10440 807f4a168ffea62d71c3b01cf682cd90 218 SMART SM00278 196 215 410.0 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ccrud_RS10440 807f4a168ffea62d71c3b01cf682cd90 218 SMART SM00278 166 185 0.0083 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ccrud_RS06885 ead878e3214b2168b29fefa61b99744b 152 SUPERFAMILY SSF143120 11 61 7.06E-7 T 14-09-2016 ccrud_RS06885 ead878e3214b2168b29fefa61b99744b 152 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 12 57 1.1E-5 T 14-09-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM ccrud_RS05425 b0daa7ad845702f53b0fd81590f0cfab 374 Pfam PF01883 Domain of unknown function DUF59 7 77 2.1E-20 T 14-09-2016 IPR002744 Domain of unknown function DUF59 ccrud_RS05425 b0daa7ad845702f53b0fd81590f0cfab 374 Gene3D G3DSA:3.40.50.300 105 356 2.9E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05425 b0daa7ad845702f53b0fd81590f0cfab 374 SUPERFAMILY SSF52540 112 361 5.48E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05425 b0daa7ad845702f53b0fd81590f0cfab 374 PANTHER PTHR23264:SF19 1 360 1.3E-129 T 14-09-2016 ccrud_RS05425 b0daa7ad845702f53b0fd81590f0cfab 374 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 112 357 6.5E-87 T 14-09-2016 IPR019591 Mrp/NBP35 ATP-binding protein ccrud_RS05425 b0daa7ad845702f53b0fd81590f0cfab 374 SUPERFAMILY SSF117916 1 89 7.85E-23 T 14-09-2016 ccrud_RS05425 b0daa7ad845702f53b0fd81590f0cfab 374 Hamap MF_02040 Iron-sulfur cluster carrier protein. 103 358 32.968 T 14-09-2016 IPR019591 Mrp/NBP35 ATP-binding protein ccrud_RS05425 b0daa7ad845702f53b0fd81590f0cfab 374 PANTHER PTHR23264 1 360 1.3E-129 T 14-09-2016 IPR019591 Mrp/NBP35 ATP-binding protein ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 Gene3D G3DSA:3.30.420.40 88 206 2.0E-7 T 14-09-2016 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 Hamap MF_00020 Acetate kinase [ackA]. 1 397 173.169 T 14-09-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 TIGRFAM TIGR00016 ackA: acetate kinase 3 396 3.5E-137 T 14-09-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 PANTHER PTHR21060 1 391 9.7E-185 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 PRINTS PR00471 Acetate kinase family signature 4 15 1.6E-44 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 PRINTS PR00471 Acetate kinase family signature 205 226 1.6E-44 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 PRINTS PR00471 Acetate kinase family signature 378 390 1.6E-44 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 PRINTS PR00471 Acetate kinase family signature 301 314 1.6E-44 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 PRINTS PR00471 Acetate kinase family signature 323 339 1.6E-44 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 PRINTS PR00471 Acetate kinase family signature 175 188 1.6E-44 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 4 15 - T 14-09-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 205 222 - T 14-09-2016 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 SUPERFAMILY SSF53067 2 198 1.42E-60 T 14-09-2016 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 Gene3D G3DSA:3.30.420.40 207 395 2.2E-75 T 14-09-2016 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 SUPERFAMILY SSF53067 159 395 4.86E-83 T 14-09-2016 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 PIRSF PIRSF000722 1 397 1.3E-140 T 14-09-2016 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 PANTHER PTHR21060:SF11 1 391 9.7E-185 T 14-09-2016 ccrud_RS12435 5a94662fbe7d21d46a847a414f49e5ef 397 Pfam PF00871 Acetokinase family 4 391 1.7E-168 T 14-09-2016 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0008152|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|UniPathway: UPA00340 ccrud_RS09675 d28258506a80410ad7d9414b899567b3 153 SUPERFAMILY SSF103473 2 146 1.96E-9 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS09675 d28258506a80410ad7d9414b899567b3 153 Gene3D G3DSA:1.20.1250.20 3 145 2.4E-7 T 14-09-2016 ccrud_RS12940 f3ad68732aabe03f47390acc3077b514 505 Gene3D G3DSA:3.40.190.10 150 279 1.9E-32 T 14-09-2016 ccrud_RS12940 f3ad68732aabe03f47390acc3077b514 505 SUPERFAMILY SSF53850 44 503 8.8E-93 T 14-09-2016 ccrud_RS12940 f3ad68732aabe03f47390acc3077b514 505 Gene3D G3DSA:3.90.76.10 63 149 3.5E-19 T 14-09-2016 ccrud_RS12940 f3ad68732aabe03f47390acc3077b514 505 Gene3D G3DSA:3.10.105.10 280 470 3.5E-35 T 14-09-2016 ccrud_RS12940 f3ad68732aabe03f47390acc3077b514 505 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 411 2.7E-70 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain ccrud_RS12940 f3ad68732aabe03f47390acc3077b514 505 PIRSF PIRSF002741 1 505 9.6E-78 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ccrud_RS12940 f3ad68732aabe03f47390acc3077b514 505 PANTHER PTHR30290 1 503 5.2E-88 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 SUPERFAMILY SSF64484 5 1089 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 SUPERFAMILY SSF64484 1127 1289 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 PANTHER PTHR19376 667 1184 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 PANTHER PTHR19376 213 640 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 5 1298 9.838 T 14-09-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 Pfam PF04983 RNA polymerase Rpb1, domain 3 564 746 1.2E-23 T 14-09-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 Pfam PF04997 RNA polymerase Rpb1, domain 1 7 417 3.2E-82 T 14-09-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 PANTHER PTHR19376:SF32 213 640 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 SMART SM00663 310 589 2.5E-172 T 14-09-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 10 1289 0.0 T 14-09-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 PANTHER PTHR19376 2 157 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 PANTHER PTHR19376 1225 1314 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 Pfam PF00623 RNA polymerase Rpb1, domain 2 419 560 5.8E-35 T 14-09-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 PANTHER PTHR19376:SF32 1225 1314 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 PANTHER PTHR19376:SF32 2 157 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 PANTHER PTHR19376:SF32 667 1184 0.0 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 Pfam PF04998 RNA polymerase Rpb1, domain 5 853 1237 7.6E-61 T 14-09-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 Gene3D G3DSA:2.40.40.20 492 564 4.3E-36 T 14-09-2016 ccrud_RS02555 575548aa29ea12dece532426e0b2be21 1333 Gene3D G3DSA:2.40.40.20 424 451 4.3E-36 T 14-09-2016 ccrud_RS13880 c962f529ffb572bbf4189dec404700d3 201 PANTHER PTHR30327 21 201 7.1E-24 T 14-09-2016 ccrud_RS13880 c962f529ffb572bbf4189dec404700d3 201 PANTHER PTHR30327:SF1 21 201 7.1E-24 T 14-09-2016 ccrud_RS13880 c962f529ffb572bbf4189dec404700d3 201 Gene3D G3DSA:3.40.1740.10 142 186 4.7E-20 T 14-09-2016 ccrud_RS13880 c962f529ffb572bbf4189dec404700d3 201 Gene3D G3DSA:3.40.1740.10 11 56 4.7E-20 T 14-09-2016 ccrud_RS13880 c962f529ffb572bbf4189dec404700d3 201 Pfam PF02622 Uncharacterized ACR, COG1678 28 184 2.5E-32 T 14-09-2016 IPR003774 Protein of unknown function UPF0301 ccrud_RS13880 c962f529ffb572bbf4189dec404700d3 201 SUPERFAMILY SSF143456 9 195 1.96E-40 T 14-09-2016 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 PANTHER PTHR33238:SF1 4 207 3.6E-69 T 14-09-2016 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 Gene3D G3DSA:1.10.60.10 79 142 2.8E-30 T 14-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 SUPERFAMILY SSF46785 8 68 2.58E-11 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 SMART SM00529 30 129 1.4E-37 T 14-09-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 Gene3D G3DSA:1.10.10.10 5 76 1.2E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 Pfam PF04023 FeoA domain 149 207 2.5E-11 T 14-09-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 69 137 8.4E-30 T 14-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 Gene3D G3DSA:2.30.30.90 145 211 1.1E-4 T 14-09-2016 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 SUPERFAMILY SSF50037 134 220 3.66E-8 T 14-09-2016 IPR008988 Transcriptional repressor, C-terminal ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 SUPERFAMILY SSF47979 69 142 3.53E-26 T 14-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 SMART SM00899 149 223 6.2E-10 T 14-09-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 PANTHER PTHR33238 4 207 3.6E-69 T 14-09-2016 ccrud_RS03235 609db7132db501f29d73b3a4af0a0456 223 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 6 66 3.4E-15 T 14-09-2016 IPR022687 DTXR-type HTH domain GO:0003677 ccrud_RS06375 e4158204220ce8487675d12df583aeb8 346 PANTHER PTHR23024 68 312 5.2E-40 T 14-09-2016 ccrud_RS06375 e4158204220ce8487675d12df583aeb8 346 SUPERFAMILY SSF53474 82 313 8.86E-44 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS06375 e4158204220ce8487675d12df583aeb8 346 Gene3D G3DSA:3.40.50.1820 70 314 1.6E-53 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS06375 e4158204220ce8487675d12df583aeb8 346 Pfam PF07859 alpha/beta hydrolase fold 101 312 1.5E-27 T 14-09-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 369 480 1.0E-27 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 Gene3D G3DSA:3.30.565.10 313 479 6.9E-45 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 SUPERFAMILY SSF55874 315 479 3.01E-42 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 SMART SM00304 201 254 8.5E-13 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 SMART SM00387 369 481 5.7E-41 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 PANTHER PTHR24423:SF535 98 114 3.0E-91 T 14-09-2016 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 PANTHER PTHR24423:SF535 195 478 3.0E-91 T 14-09-2016 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 Gene3D G3DSA:1.10.287.130 256 312 4.5E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 424 434 1.6E-20 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 420 1.6E-20 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 459 1.6E-20 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 PRINTS PR00344 Bacterial sensor protein C-terminal signature 465 478 1.6E-20 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 Pfam PF00512 His Kinase A (phospho-acceptor) domain 263 325 2.2E-13 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 Pfam PF00672 HAMP domain 182 251 7.0E-15 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 PANTHER PTHR24423 98 114 3.0E-91 T 14-09-2016 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 PANTHER PTHR24423 195 478 3.0E-91 T 14-09-2016 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 SUPERFAMILY SSF158472 201 251 3.01E-10 T 14-09-2016 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 SUPERFAMILY SSF47384 246 327 9.42E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS11740 634c0e1bec35b6c9d3bb65b927272daa 481 SMART SM00388 262 326 3.8E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 PANTHER PTHR11264:SF5 158 272 8.9E-84 T 14-09-2016 ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 PANTHER PTHR11264 158 272 8.9E-84 T 14-09-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 Gene3D G3DSA:3.40.470.10 161 272 1.9E-77 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 Gene3D G3DSA:3.40.470.10 13 117 1.9E-77 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 Pfam PF03167 Uracil DNA glycosylase superfamily 59 261 2.2E-17 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 66 75 - T 14-09-2016 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 SMART SM00986 58 260 1.3E-27 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 PANTHER PTHR11264 19 116 8.9E-84 T 14-09-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 SMART SM00987 58 260 1.3E-27 T 14-09-2016 ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 SUPERFAMILY SSF52141 14 113 3.93E-68 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 SUPERFAMILY SSF52141 156 272 3.93E-68 T 14-09-2016 IPR005122 Uracil-DNA glycosylase-like ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 PANTHER PTHR11264:SF5 19 116 8.9E-84 T 14-09-2016 ccrud_RS06465 eddc5ff8f4089fbf39c66402faf9dc44 272 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 16 271 32.937 T 14-09-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 Gene3D G3DSA:1.10.1740.10 16 90 1.1E-27 T 14-09-2016 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 Pfam PF04542 Sigma-70 region 2 25 88 1.8E-19 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 Gene3D G3DSA:1.10.10.10 129 186 1.2E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 183 8.7E-28 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 SUPERFAMILY SSF88659 131 185 1.21E-16 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 Pfam PF08281 Sigma-70, region 4 129 180 1.9E-17 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 PANTHER PTHR30173:SF9 4 186 7.3E-44 T 14-09-2016 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 TIGRFAM TIGR02947 SigH_actino: RNA polymerase sigma-70 factor, TIGR02947 family 9 194 2.4E-94 T 14-09-2016 IPR014293 RNA polymerase sigma-70, actinobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 SUPERFAMILY SSF88946 17 103 1.36E-24 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 PANTHER PTHR30173 4 186 7.3E-44 T 14-09-2016 ccrud_RS03735 cfdc2fcaaefafdaf7793203807f805fe 206 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 43 74 - T 14-09-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 PANTHER PTHR21091 20 389 5.7E-115 T 14-09-2016 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Gene3D G3DSA:3.10.196.10 991 1221 5.4E-61 T 14-09-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 PIRSF PIRSF000381 11 1221 0.0 T 14-09-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 PANTHER PTHR21091:SF97 20 389 5.7E-115 T 14-09-2016 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 SUPERFAMILY SSF56507 932 1221 7.72E-84 T 14-09-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Pfam PF00809 Pterin binding enzyme 371 607 2.9E-45 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Pfam PF02574 Homocysteine S-methyltransferase 27 320 6.4E-67 T 14-09-2016 IPR003726 Homocysteine-binding domain ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 TIGRFAM TIGR02082 metH: methionine synthase 23 1221 0.0 T 14-09-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Gene3D G3DSA:3.20.20.20 376 638 1.1E-87 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 1007 1221 1.5E-30 T 14-09-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 SUPERFAMILY SSF82282 16 410 1.57E-98 T 14-09-2016 IPR003726 Homocysteine-binding domain ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 SUPERFAMILY SSF47644 664 747 1.96E-24 T 14-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Gene3D G3DSA:3.40.50.280 758 900 7.5E-48 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Gene3D G3DSA:1.10.1240.10 660 745 5.2E-31 T 14-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 SUPERFAMILY SSF52242 757 893 5.49E-39 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Pfam PF02607 B12 binding domain 669 741 2.3E-22 T 14-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Gene3D G3DSA:3.20.20.330 12 375 8.1E-105 T 14-09-2016 IPR003726 Homocysteine-binding domain ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 SUPERFAMILY SSF51717 369 639 1.31E-77 T 14-09-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 Pfam PF02310 B12 binding domain 761 877 2.4E-19 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 ccrud_RS07320 fefb640d31e6f694c4a65688234b798f 1221 SMART SM01018 666 748 1.2E-40 T 14-09-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 2 114 2.9E-42 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 Pfam PF00453 Ribosomal protein L20 3 109 1.4E-42 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 PANTHER PTHR10986:SF12 2 124 9.2E-67 T 14-09-2016 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 Gene3D G3DSA:1.10.1900.20 56 118 1.7E-28 T 14-09-2016 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 PANTHER PTHR10986 2 124 9.2E-67 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 21 70 6.0E-22 T 14-09-2016 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 27.42 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 PRINTS PR00062 Ribosomal protein L20 signature 75 101 5.0E-37 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 PRINTS PR00062 Ribosomal protein L20 signature 12 41 5.0E-37 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 PRINTS PR00062 Ribosomal protein L20 signature 42 71 5.0E-37 T 14-09-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 ccrud_RS06625 5e6e502ce611b0c968000693d88bda73 127 SUPERFAMILY SSF74731 3 117 3.66E-44 T 14-09-2016 ccrud_RS00495 0403e1cb6a4170c72d093eee5c06c52d 154 Pfam PF00699 Urease beta subunit 3 99 1.1E-39 T 14-09-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00495 0403e1cb6a4170c72d093eee5c06c52d 154 PANTHER PTHR33569:SF1 1 102 3.1E-51 T 14-09-2016 ccrud_RS00495 0403e1cb6a4170c72d093eee5c06c52d 154 SUPERFAMILY SSF51278 1 112 1.44E-45 T 14-09-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00495 0403e1cb6a4170c72d093eee5c06c52d 154 PANTHER PTHR33569 1 102 3.1E-51 T 14-09-2016 ccrud_RS00495 0403e1cb6a4170c72d093eee5c06c52d 154 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 103 5.1E-42 T 14-09-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00495 0403e1cb6a4170c72d093eee5c06c52d 154 Gene3D G3DSA:2.10.150.10 1 107 4.0E-46 T 14-09-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00495 0403e1cb6a4170c72d093eee5c06c52d 154 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 31.131 T 14-09-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS06835 650dcbc0c327305da570d37737d228ad 192 PIRSF PIRSF019345 10 192 1.1E-49 T 14-09-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 ccrud_RS06835 650dcbc0c327305da570d37737d228ad 192 Gene3D G3DSA:1.10.10.10 17 92 3.5E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06835 650dcbc0c327305da570d37737d228ad 192 PANTHER PTHR34298 16 191 9.7E-49 T 14-09-2016 ccrud_RS06835 650dcbc0c327305da570d37737d228ad 192 Pfam PF04079 Segregation and condensation complex subunit ScpB 21 178 4.1E-49 T 14-09-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 ccrud_RS06835 650dcbc0c327305da570d37737d228ad 192 SUPERFAMILY SSF46785 97 169 1.82E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06835 650dcbc0c327305da570d37737d228ad 192 SUPERFAMILY SSF46785 17 91 9.61E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06835 650dcbc0c327305da570d37737d228ad 192 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 22 179 2.1E-27 T 14-09-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 ccrud_RS06835 650dcbc0c327305da570d37737d228ad 192 Gene3D G3DSA:1.10.10.10 96 169 6.5E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06835 650dcbc0c327305da570d37737d228ad 192 PANTHER PTHR34298:SF2 16 191 9.7E-49 T 14-09-2016 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 Gene3D G3DSA:3.30.1730.10 3 155 3.1E-36 T 14-09-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 Pfam PF01048 Phosphorylase superfamily 257 432 1.1E-13 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 PANTHER PTHR21234:SF11 167 212 1.5E-73 T 14-09-2016 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 6 469 8.2E-225 T 14-09-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 9 153 5.5E-37 T 14-09-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 SUPERFAMILY SSF53167 5 469 7.72E-113 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 PANTHER PTHR21234:SF11 237 460 1.5E-73 T 14-09-2016 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 Hamap MF_01932 AMP nucleosidase [amn]. 1 469 51.414 T 14-09-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 PANTHER PTHR21234 237 460 1.5E-73 T 14-09-2016 IPR018017 Nucleoside phosphorylase ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 Gene3D G3DSA:3.40.50.1580 163 447 1.2E-84 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 ccrud_RS00550 c5d74163e633e2c7d5ddb6be88280056 469 PANTHER PTHR21234 167 212 1.5E-73 T 14-09-2016 IPR018017 Nucleoside phosphorylase ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 3.2E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 3.2E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 3.2E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.2E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 3.2E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 3.2E-37 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 TIGRFAM TIGR02415 23BDH: acetoin reductases 3 258 1.8E-124 T 14-09-2016 IPR014007 Acetoin reductase GO:0019152|GO:0045150|GO:0055114 KEGG: 00072+1.1.1.30|KEGG: 00650+1.1.1.304+1.1.1.30|MetaCyc: PWY-6389 ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PANTHER PTHR24322:SF460 7 138 1.9E-55 T 14-09-2016 ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 6.1E-12 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 6.1E-12 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 6.1E-12 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 SUPERFAMILY SSF51735 3 256 1.56E-78 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 9 255 1.9E-57 T 14-09-2016 ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PANTHER PTHR24322:SF460 154 186 1.9E-55 T 14-09-2016 ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PANTHER PTHR24322 154 186 1.9E-55 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 Gene3D G3DSA:3.40.50.720 3 256 7.8E-80 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12045 7c090019982d60a5eefd53e50e1b297a 258 PANTHER PTHR24322 7 138 1.9E-55 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13205 6f0c2f9320236112aeef27a007ce7ba1 379 Pfam PF01425 Amidase 186 351 3.4E-8 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS13205 6f0c2f9320236112aeef27a007ce7ba1 379 Pfam PF01425 Amidase 28 160 3.4E-40 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS13205 6f0c2f9320236112aeef27a007ce7ba1 379 Gene3D G3DSA:3.90.1300.10 4 377 1.4E-63 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS13205 6f0c2f9320236112aeef27a007ce7ba1 379 PANTHER PTHR11895 3 350 2.3E-55 T 14-09-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS13205 6f0c2f9320236112aeef27a007ce7ba1 379 ProSitePatterns PS00571 Amidases signature. 116 147 - T 14-09-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS13205 6f0c2f9320236112aeef27a007ce7ba1 379 SUPERFAMILY SSF75304 6 377 3.27E-75 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS03330 9046cf92b38e593636c34db37aab49f2 420 PANTHER PTHR23501:SF4 34 420 5.5E-106 T 14-09-2016 ccrud_RS03330 9046cf92b38e593636c34db37aab49f2 420 PANTHER PTHR23501 34 420 5.5E-106 T 14-09-2016 ccrud_RS03330 9046cf92b38e593636c34db37aab49f2 420 SUPERFAMILY SSF103473 35 414 3.79E-61 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS03330 9046cf92b38e593636c34db37aab49f2 420 Gene3D G3DSA:1.20.1250.20 37 220 1.4E-28 T 14-09-2016 ccrud_RS03330 9046cf92b38e593636c34db37aab49f2 420 Pfam PF07690 Major Facilitator Superfamily 47 324 1.5E-35 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS03330 9046cf92b38e593636c34db37aab49f2 420 Gene3D G3DSA:1.20.1250.20 236 414 7.3E-17 T 14-09-2016 ccrud_RS13305 d6eca1634baaee34104f31a951d3e105 420 PANTHER PTHR10578 16 400 2.1E-134 T 14-09-2016 ccrud_RS13305 d6eca1634baaee34104f31a951d3e105 420 SUPERFAMILY SSF51395 34 400 1.15E-90 T 14-09-2016 ccrud_RS13305 d6eca1634baaee34104f31a951d3e105 420 PIRSF PIRSF000138 12 405 2.5E-130 T 14-09-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 ccrud_RS13305 d6eca1634baaee34104f31a951d3e105 420 Pfam PF01070 FMN-dependent dehydrogenase 43 401 2.0E-121 T 14-09-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 ccrud_RS13305 d6eca1634baaee34104f31a951d3e105 420 PANTHER PTHR10578:SF65 16 400 2.1E-134 T 14-09-2016 ccrud_RS13305 d6eca1634baaee34104f31a951d3e105 420 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 298 304 - T 14-09-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 ccrud_RS13305 d6eca1634baaee34104f31a951d3e105 420 Gene3D G3DSA:3.20.20.70 34 402 3.0E-121 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS09105 28e3bcbaa2df3a2c986526ef8b873728 374 PANTHER PTHR21599:SF0 14 339 9.9E-73 T 14-09-2016 ccrud_RS09105 28e3bcbaa2df3a2c986526ef8b873728 374 PANTHER PTHR21599 14 339 9.9E-73 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS09105 28e3bcbaa2df3a2c986526ef8b873728 374 PIRSF PIRSF006078 13 371 3.9E-96 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS09105 28e3bcbaa2df3a2c986526ef8b873728 374 SUPERFAMILY SSF110738 14 341 7.85E-86 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS09105 28e3bcbaa2df3a2c986526ef8b873728 374 Gene3D G3DSA:3.40.50.10350 258 339 1.1E-13 T 14-09-2016 IPR018197 Glycerate kinase, restriction-enzyme-like fold ccrud_RS09105 28e3bcbaa2df3a2c986526ef8b873728 374 Pfam PF02595 Glycerate kinase family 15 339 3.2E-87 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS09105 28e3bcbaa2df3a2c986526ef8b873728 374 Gene3D G3DSA:3.90.1510.10 54 257 9.1E-59 T 14-09-2016 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 ccrud_RS09105 28e3bcbaa2df3a2c986526ef8b873728 374 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 14 340 5.4E-77 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 Pfam PF00005 ABC transporter 373 521 2.5E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 Gene3D G3DSA:1.10.3720.10 76 280 5.0E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 PANTHER PTHR24220:SF535 354 632 4.4E-121 T 14-09-2016 ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 SUPERFAMILY SSF52540 352 592 3.33E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 573 630 2.3E-9 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 571 632 3.5E-10 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 SMART SM00382 381 571 1.5E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 SUPERFAMILY SSF161098 80 274 9.16E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 PANTHER PTHR24220 354 632 4.4E-121 T 14-09-2016 ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 Gene3D G3DSA:3.40.50.300 351 595 3.0E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 276 8.4E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11970 72096e523f77a51f86bdc68294e4e736 667 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 SMART SM00345 43 102 8.7E-13 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 PANTHER PTHR11751:SF333 150 174 1.7E-21 T 14-09-2016 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 Pfam PF07702 UTRA domain 123 259 5.1E-36 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 PANTHER PTHR11751 39 104 1.7E-21 T 14-09-2016 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 Gene3D G3DSA:1.10.10.10 38 97 3.8E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 Gene3D G3DSA:3.40.1410.10 98 266 1.6E-44 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 PANTHER PTHR11751:SF333 39 104 1.7E-21 T 14-09-2016 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 SUPERFAMILY SSF64288 90 267 5.02E-46 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 Pfam PF00392 Bacterial regulatory proteins, gntR family 46 102 3.6E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 PANTHER PTHR11751 150 174 1.7E-21 T 14-09-2016 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 SMART SM00866 122 260 4.5E-36 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 SUPERFAMILY SSF46785 41 106 2.89E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 76 92 2.0E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS13180 c5114f663b85fd941381ad63da3a1891 271 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 62 76 2.0E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS01240 990607ba54214eaef3a4f515480e4e94 458 Gene3D G3DSA:1.20.1560.10 3 262 1.3E-20 T 14-09-2016 ccrud_RS01240 990607ba54214eaef3a4f515480e4e94 458 Pfam PF00664 ABC transporter transmembrane region 25 224 1.3E-8 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS01240 990607ba54214eaef3a4f515480e4e94 458 SUPERFAMILY SSF52540 301 428 1.73E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01240 990607ba54214eaef3a4f515480e4e94 458 SUPERFAMILY SSF90123 5 268 2.49E-23 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS02665 b2fe0b0d2e4df407926084c25fbe5033 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 1 98 20.273 T 14-09-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02665 b2fe0b0d2e4df407926084c25fbe5033 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 104 9.8E-37 T 14-09-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02665 b2fe0b0d2e4df407926084c25fbe5033 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 104 1.8E-24 T 14-09-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02665 b2fe0b0d2e4df407926084c25fbe5033 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 6 23 - T 14-09-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02665 b2fe0b0d2e4df407926084c25fbe5033 104 SMART SM00739 2 29 1.8E-4 T 14-09-2016 IPR005824 KOW ccrud_RS02665 b2fe0b0d2e4df407926084c25fbe5033 104 SUPERFAMILY SSF50104 1 99 2.44E-30 T 14-09-2016 IPR008991 Translation protein SH3-like domain ccrud_RS02665 b2fe0b0d2e4df407926084c25fbe5033 104 Pfam PF00467 KOW motif 5 36 7.2E-8 T 14-09-2016 IPR005824 KOW ccrud_RS02665 b2fe0b0d2e4df407926084c25fbe5033 104 PANTHER PTHR12903 1 104 1.0E-38 T 14-09-2016 ccrud_RS02665 b2fe0b0d2e4df407926084c25fbe5033 104 Gene3D G3DSA:2.30.30.30 1 93 9.0E-27 T 14-09-2016 IPR014722 Ribosomal protein L2 domain 2 ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 SUPERFAMILY SSF52540 331 480 7.17E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 Gene3D G3DSA:1.20.1560.10 2 296 1.5E-35 T 14-09-2016 ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 Pfam PF00664 ABC transporter transmembrane region 2 256 8.7E-20 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 Pfam PF00005 ABC transporter 331 403 1.9E-8 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 SMART SM00382 338 481 3.6E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 Gene3D G3DSA:3.40.50.300 314 480 1.3E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 PANTHER PTHR24221:SF261 40 462 4.9E-42 T 14-09-2016 ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 SUPERFAMILY SSF90123 2 301 1.7E-36 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 418 470 1.6E-6 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS05535 ea0d9a29b5a41e880e80d808504f0e4e 481 PANTHER PTHR24221 40 462 4.9E-42 T 14-09-2016 ccrud_RS12380 2bc8f3b0c12496342c5cf30071b6f4fa 263 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 261 4.0E-67 T 14-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 ccrud_RS12380 2bc8f3b0c12496342c5cf30071b6f4fa 263 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 259 3.0E-55 T 14-09-2016 ccrud_RS12380 2bc8f3b0c12496342c5cf30071b6f4fa 263 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 254 3.4E-18 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS12380 2bc8f3b0c12496342c5cf30071b6f4fa 263 Gene3D G3DSA:3.60.10.10 1 261 2.5E-72 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS12380 2bc8f3b0c12496342c5cf30071b6f4fa 263 SUPERFAMILY SSF56219 1 261 3.8E-66 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS12380 2bc8f3b0c12496342c5cf30071b6f4fa 263 PANTHER PTHR22748 1 260 4.5E-95 T 14-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 ccrud_RS12380 2bc8f3b0c12496342c5cf30071b6f4fa 263 PANTHER PTHR22748:SF7 1 260 4.5E-95 T 14-09-2016 ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 11 390 3.9E-141 T 14-09-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 8 391 44.108 T 14-09-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 Gene3D G3DSA:3.90.1150.10 9 54 7.7E-33 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 Gene3D G3DSA:3.90.1150.10 304 390 7.7E-33 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 PANTHER PTHR11986:SF79 2 391 5.2E-166 T 14-09-2016 ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 Gene3D G3DSA:3.40.640.10 55 302 5.6E-90 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 SUPERFAMILY SSF53383 11 390 5.78E-122 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 221 258 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 PANTHER PTHR11986 2 391 5.2E-166 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ccrud_RS06700 f54991cd7117890320f2304966a6543b 391 Pfam PF00202 Aminotransferase class-III 20 390 1.6E-110 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 Gene3D G3DSA:3.30.930.10 9 363 1.0E-140 T 14-09-2016 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 Pfam PF03129 Anticodon binding domain 367 455 3.0E-24 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 154 292 2.6E-8 T 14-09-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 TIGRFAM TIGR00389 glyS_dimeric: glycine--tRNA ligase 8 230 1.8E-75 T 14-09-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 Gene3D G3DSA:3.40.50.800 364 457 2.0E-41 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 Hamap MF_00253_B Glycine--tRNA ligase [glyQS]. 4 459 49.93 T 14-09-2016 IPR022961 Glycine-tRNA ligase, bacterial GO:0004820 KEGG: 00970+6.1.1.14 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 SUPERFAMILY SSF55681 7 370 5.2E-121 T 14-09-2016 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 SUPERFAMILY SSF52954 354 458 4.38E-35 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 PANTHER PTHR10745 8 458 4.7E-207 T 14-09-2016 IPR027031 Glycyl-tRNA synthetase/DNA polymerase subunit gamma-2 KEGG: 00970+6.1.1.14 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 PRINTS PR01043 Glycyl-tRNA synthetase signature 191 208 1.1E-52 T 14-09-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 PRINTS PR01043 Glycyl-tRNA synthetase signature 138 150 1.1E-52 T 14-09-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 PRINTS PR01043 Glycyl-tRNA synthetase signature 159 176 1.1E-52 T 14-09-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 PRINTS PR01043 Glycyl-tRNA synthetase signature 26 40 1.1E-52 T 14-09-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 PRINTS PR01043 Glycyl-tRNA synthetase signature 208 218 1.1E-52 T 14-09-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 PRINTS PR01043 Glycyl-tRNA synthetase signature 318 330 1.1E-52 T 14-09-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ccrud_RS10050 e120fe12f6e12a3f368aa90c8aa7eaf8 461 PRINTS PR01043 Glycyl-tRNA synthetase signature 404 423 1.1E-52 T 14-09-2016 IPR002315 Glycyl-tRNA synthetase GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 ccrud_RS04265 4174882dd59601d24f6c9cbd23ed400f 222 PANTHER PTHR30055 7 149 5.2E-17 T 14-09-2016 ccrud_RS04265 4174882dd59601d24f6c9cbd23ed400f 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 24 68 1.7E-15 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS04265 4174882dd59601d24f6c9cbd23ed400f 222 PANTHER PTHR30055:SF72 7 149 5.2E-17 T 14-09-2016 ccrud_RS04265 4174882dd59601d24f6c9cbd23ed400f 222 Gene3D G3DSA:1.10.357.10 19 203 4.3E-26 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS04265 4174882dd59601d24f6c9cbd23ed400f 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 45 68 6.0E-11 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS04265 4174882dd59601d24f6c9cbd23ed400f 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 24 37 6.0E-11 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS04265 4174882dd59601d24f6c9cbd23ed400f 222 SUPERFAMILY SSF46689 11 79 8.98E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS13755 21b1295f2dd0e4edc7e9e81794e2693a 257 PANTHER PTHR41913:SF1 96 257 4.8E-22 T 14-09-2016 ccrud_RS13755 21b1295f2dd0e4edc7e9e81794e2693a 257 Pfam PF07920 Protein of unknown function (DUF1684) 119 251 3.0E-26 T 14-09-2016 IPR012467 Protein of unknown function DUF1684 ccrud_RS13755 21b1295f2dd0e4edc7e9e81794e2693a 257 PANTHER PTHR41913 96 257 4.8E-22 T 14-09-2016 ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 Gene3D G3DSA:1.10.357.10 76 183 6.0E-14 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 PRINTS PR00400 Tetracycline repressor protein signature 24 47 2.7E-6 T 14-09-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 PRINTS PR00400 Tetracycline repressor protein signature 125 144 2.7E-6 T 14-09-2016 IPR003012 Tetracycline transcriptional regulator, TetR GO:0045892|GO:0046677 ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 57 2.3E-14 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 SUPERFAMILY SSF48498 85 185 1.67E-5 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 4.9E-9 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 4.9E-9 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 PANTHER PTHR30055 6 91 3.0E-13 T 14-09-2016 ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 14-09-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 SUPERFAMILY SSF46689 6 70 2.48E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS09220 89f857dd377e6ad35e9669700e340f2a 187 Gene3D G3DSA:1.10.10.60 6 66 3.9E-22 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS07820 b19f12c653e273d85455af5f87cdb328 217 Gene3D G3DSA:1.10.940.10 10 149 1.5E-32 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 ccrud_RS07820 b19f12c653e273d85455af5f87cdb328 217 PANTHER PTHR11078 14 162 4.1E-27 T 14-09-2016 IPR011605 NusB antitermination factor GO:0006353 ccrud_RS07820 b19f12c653e273d85455af5f87cdb328 217 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 14 147 6.5E-32 T 14-09-2016 IPR011605 NusB antitermination factor GO:0006353 ccrud_RS07820 b19f12c653e273d85455af5f87cdb328 217 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 12 149 18.356 T 14-09-2016 IPR011605 NusB antitermination factor GO:0006353 ccrud_RS07820 b19f12c653e273d85455af5f87cdb328 217 SUPERFAMILY SSF48013 13 144 3.66E-31 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 ccrud_RS07820 b19f12c653e273d85455af5f87cdb328 217 Pfam PF01029 NusB family 16 145 9.9E-24 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 ccrud_RS04375 ce87d3435454dcb5f524b3334c1521f8 400 PANTHER PTHR23523 14 399 4.5E-80 T 14-09-2016 ccrud_RS04375 ce87d3435454dcb5f524b3334c1521f8 400 Gene3D G3DSA:1.20.1250.20 210 387 4.6E-9 T 14-09-2016 ccrud_RS04375 ce87d3435454dcb5f524b3334c1521f8 400 PANTHER PTHR23523:SF2 14 399 4.5E-80 T 14-09-2016 ccrud_RS04375 ce87d3435454dcb5f524b3334c1521f8 400 Pfam PF07690 Major Facilitator Superfamily 14 352 1.1E-9 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS04375 ce87d3435454dcb5f524b3334c1521f8 400 SUPERFAMILY SSF103473 4 388 9.29E-37 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS04375 ce87d3435454dcb5f524b3334c1521f8 400 Gene3D G3DSA:1.20.1250.20 6 188 2.8E-12 T 14-09-2016 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 PANTHER PTHR11817:SF28 113 213 6.4E-117 T 14-09-2016 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 PANTHER PTHR11817:SF28 330 618 6.4E-117 T 14-09-2016 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 SUPERFAMILY SSF51621 429 600 6.63E-58 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 SUPERFAMILY SSF51621 117 207 6.63E-58 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 PANTHER PTHR11817 113 213 6.4E-117 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 PANTHER PTHR11817 330 618 6.4E-117 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 Gene3D G3DSA:2.40.33.10 358 430 3.0E-13 T 14-09-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 SUPERFAMILY SSF50800 330 429 2.27E-9 T 14-09-2016 IPR011037 Pyruvate kinase-like, insert domain ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 Pfam PF00224 Pyruvate kinase, barrel domain 145 213 2.2E-8 T 14-09-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 Pfam PF00224 Pyruvate kinase, barrel domain 330 580 1.0E-34 T 14-09-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 Gene3D G3DSA:3.20.20.60 431 597 1.4E-57 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS13265 c4ecb5395067b4af70283168c20fc641 618 Gene3D G3DSA:3.20.20.60 137 206 1.4E-57 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS03400 b94b232bc904100ab18ed41db79e4263 211 PANTHER PTHR10285 1 196 2.4E-67 T 14-09-2016 ccrud_RS03400 b94b232bc904100ab18ed41db79e4263 211 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 207 40.908 T 14-09-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 ccrud_RS03400 b94b232bc904100ab18ed41db79e4263 211 PANTHER PTHR10285:SF46 1 196 2.4E-67 T 14-09-2016 ccrud_RS03400 b94b232bc904100ab18ed41db79e4263 211 SUPERFAMILY SSF53271 4 205 4.2E-59 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS03400 b94b232bc904100ab18ed41db79e4263 211 Pfam PF14681 Uracil phosphoribosyltransferase 6 205 5.7E-58 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS03400 b94b232bc904100ab18ed41db79e4263 211 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 3 205 1.1E-68 T 14-09-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 ccrud_RS03400 b94b232bc904100ab18ed41db79e4263 211 Gene3D G3DSA:3.40.50.2020 3 205 5.9E-66 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS04985 811f1a2b877322415581bad70ec2e6e1 334 PIRSF PIRSF004532 8 328 2.6E-160 T 14-09-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 ccrud_RS04985 811f1a2b877322415581bad70ec2e6e1 334 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 10 324 1.7E-114 T 14-09-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 ccrud_RS04985 811f1a2b877322415581bad70ec2e6e1 334 PANTHER PTHR30447:SF0 1 331 4.0E-176 T 14-09-2016 ccrud_RS04985 811f1a2b877322415581bad70ec2e6e1 334 Gene3D G3DSA:3.30.540.10 8 180 2.1E-63 T 14-09-2016 ccrud_RS04985 811f1a2b877322415581bad70ec2e6e1 334 Gene3D G3DSA:3.30.540.10 181 329 4.2E-43 T 14-09-2016 ccrud_RS04985 811f1a2b877322415581bad70ec2e6e1 334 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 10 317 4.1E-138 T 14-09-2016 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 ccrud_RS04985 811f1a2b877322415581bad70ec2e6e1 334 PANTHER PTHR30447 1 331 4.0E-176 T 14-09-2016 ccrud_RS04985 811f1a2b877322415581bad70ec2e6e1 334 SUPERFAMILY SSF56655 7 319 8.24E-110 T 14-09-2016 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 PANTHER PTHR19278 2 24 1.8E-58 T 14-09-2016 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 Gene3D G3DSA:3.20.20.70 7 264 5.6E-61 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 SMART SM00934 16 264 3.2E-34 T 14-09-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 90 103 - T 14-09-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 SUPERFAMILY SSF51366 3 264 3.01E-65 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 PANTHER PTHR19278:SF1 40 235 1.8E-58 T 14-09-2016 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 PANTHER PTHR19278 40 235 1.8E-58 T 14-09-2016 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 TIGRFAM TIGR02127 pyrF_sub2: orotidine 5'-phosphate decarboxylase 3 263 3.0E-81 T 14-09-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 Hamap MF_01215 Orotidine 5'-phosphate decarboxylase [pyrF]. 2 278 34.368 T 14-09-2016 IPR011995 Orotidine 5'-phosphate decarboxylase, type 2 GO:0004590|GO:0006221 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 16 263 2.0E-38 T 14-09-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07775 0b11a298f4299eec82514d14417bd6fe 278 PANTHER PTHR19278:SF1 2 24 1.8E-58 T 14-09-2016 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 SUPERFAMILY SSF53244 343 504 1.7E-44 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 Gene3D G3DSA:3.40.1190.10 111 346 2.2E-74 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 6 502 31.466 T 14-09-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 Pfam PF01225 Mur ligase family, catalytic domain 29 106 1.6E-4 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 SUPERFAMILY SSF63418 10 111 6.8E-10 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 28 502 6.1E-140 T 14-09-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 Gene3D G3DSA:3.40.1390.10 18 109 5.0E-10 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 PANTHER PTHR23135 16 511 2.2E-153 T 14-09-2016 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 Gene3D G3DSA:3.90.190.20 347 496 7.9E-48 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 PANTHER PTHR23135:SF4 16 511 2.2E-153 T 14-09-2016 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 SUPERFAMILY SSF53623 111 341 2.62E-68 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 Pfam PF08245 Mur ligase middle domain 120 324 5.2E-45 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09480 667d1110aa4da6cab32baef4033e1b93 513 Pfam PF02875 Mur ligase family, glutamate ligase domain 343 426 1.1E-19 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 7 264 32.205 T 14-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 Pfam PF01416 tRNA pseudouridine synthase 14 79 3.7E-7 T 14-09-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 Pfam PF01416 tRNA pseudouridine synthase 159 265 7.0E-23 T 14-09-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 SUPERFAMILY SSF55120 6 270 3.74E-71 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 9 258 3.4E-48 T 14-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 PIRSF PIRSF001430 6 281 2.0E-71 T 14-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 Gene3D G3DSA:3.30.70.580 6 120 2.6E-34 T 14-09-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 PANTHER PTHR11142 7 285 2.0E-79 T 14-09-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 Gene3D G3DSA:3.30.70.660 122 262 4.7E-34 T 14-09-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS02910 7a8f6fad864ce8b586738134651c27eb 290 PANTHER PTHR11142:SF0 7 285 2.0E-79 T 14-09-2016 ccrud_RS06780 745cced5a4d267dbaba8e26a0e8af582 322 Gene3D G3DSA:3.40.50.10330 13 160 3.0E-34 T 14-09-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 ccrud_RS06780 745cced5a4d267dbaba8e26a0e8af582 322 Hamap MF_00361 NAD kinase [nadK]. 13 301 29.194 T 14-09-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 ccrud_RS06780 745cced5a4d267dbaba8e26a0e8af582 322 Pfam PF01513 ATP-NAD kinase 60 286 2.7E-63 T 14-09-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 ccrud_RS06780 745cced5a4d267dbaba8e26a0e8af582 322 SUPERFAMILY SSF111331 14 307 7.98E-78 T 14-09-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain ccrud_RS06780 745cced5a4d267dbaba8e26a0e8af582 322 Gene3D G3DSA:2.60.200.30 161 276 4.8E-35 T 14-09-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 ccrud_RS06780 745cced5a4d267dbaba8e26a0e8af582 322 PANTHER PTHR20275 13 318 2.0E-68 T 14-09-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 ccrud_RS00990 e84dd6238f172fee4893ceb72ff3ffdd 209 Gene3D G3DSA:1.10.10.10 123 206 6.2E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00990 e84dd6238f172fee4893ceb72ff3ffdd 209 Pfam PF00072 Response regulator receiver domain 6 117 2.7E-22 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS00990 e84dd6238f172fee4893ceb72ff3ffdd 209 SMART SM00448 4 117 4.0E-25 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS00990 e84dd6238f172fee4893ceb72ff3ffdd 209 SMART SM00421 146 203 2.4E-4 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS00990 e84dd6238f172fee4893ceb72ff3ffdd 209 PANTHER PTHR26402 4 205 6.7E-40 T 14-09-2016 ccrud_RS00990 e84dd6238f172fee4893ceb72ff3ffdd 209 Gene3D G3DSA:3.40.50.2300 4 122 1.9E-30 T 14-09-2016 ccrud_RS00990 e84dd6238f172fee4893ceb72ff3ffdd 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 148 200 3.7E-5 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS00990 e84dd6238f172fee4893ceb72ff3ffdd 209 SUPERFAMILY SSF46894 138 205 1.09E-9 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS00990 e84dd6238f172fee4893ceb72ff3ffdd 209 SUPERFAMILY SSF52172 2 134 1.57E-30 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS03255 a414c568c45220bcecc4a077b43efe5b 157 Pfam PF00588 SpoU rRNA Methylase family 6 145 1.4E-31 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 ccrud_RS03255 a414c568c45220bcecc4a077b43efe5b 157 Gene3D G3DSA:3.40.1280.10 3 155 7.7E-58 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ccrud_RS03255 a414c568c45220bcecc4a077b43efe5b 157 PANTHER PTHR12029:SF31 6 153 1.0E-60 T 14-09-2016 ccrud_RS03255 a414c568c45220bcecc4a077b43efe5b 157 SUPERFAMILY SSF75217 5 153 9.81E-40 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases ccrud_RS03255 a414c568c45220bcecc4a077b43efe5b 157 PIRSF PIRSF029256 5 157 1.4E-56 T 14-09-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 ccrud_RS03255 a414c568c45220bcecc4a077b43efe5b 157 PANTHER PTHR12029 6 153 1.0E-60 T 14-09-2016 ccrud_RS03255 a414c568c45220bcecc4a077b43efe5b 157 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 6 154 31.71 T 14-09-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 ccrud_RS11505 55b3def904766aa325d2a596ac7fba2e 418 SUPERFAMILY SSF55205 3 417 4.58E-127 T 14-09-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 ccrud_RS11505 55b3def904766aa325d2a596ac7fba2e 418 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3 415 4.3E-159 T 14-09-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11505 55b3def904766aa325d2a596ac7fba2e 418 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 2 416 40.386 T 14-09-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11505 55b3def904766aa325d2a596ac7fba2e 418 Gene3D G3DSA:3.65.10.10 222 416 2.6E-50 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 ccrud_RS11505 55b3def904766aa325d2a596ac7fba2e 418 PANTHER PTHR21090 3 417 1.8E-162 T 14-09-2016 ccrud_RS11505 55b3def904766aa325d2a596ac7fba2e 418 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 406 1.7E-96 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 ccrud_RS11505 55b3def904766aa325d2a596ac7fba2e 418 Gene3D G3DSA:3.65.10.10 22 221 8.0E-60 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 ccrud_RS13595 fe83cc90d7a27f32c11d2b4d900eefca 494 Gene3D G3DSA:3.30.420.40 16 264 7.2E-41 T 14-09-2016 ccrud_RS13595 fe83cc90d7a27f32c11d2b4d900eefca 494 PANTHER PTHR10196:SF41 1 456 1.7E-58 T 14-09-2016 ccrud_RS13595 fe83cc90d7a27f32c11d2b4d900eefca 494 SUPERFAMILY SSF53067 18 266 2.88E-43 T 14-09-2016 ccrud_RS13595 fe83cc90d7a27f32c11d2b4d900eefca 494 SUPERFAMILY SSF53067 266 493 1.17E-25 T 14-09-2016 ccrud_RS13595 fe83cc90d7a27f32c11d2b4d900eefca 494 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 18 236 2.1E-32 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 ccrud_RS13595 fe83cc90d7a27f32c11d2b4d900eefca 494 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 305 451 6.9E-18 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 ccrud_RS13595 fe83cc90d7a27f32c11d2b4d900eefca 494 PIRSF PIRSF000538 16 493 6.0E-63 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 ccrud_RS13595 fe83cc90d7a27f32c11d2b4d900eefca 494 PANTHER PTHR10196 1 456 1.7E-58 T 14-09-2016 ccrud_RS13595 fe83cc90d7a27f32c11d2b4d900eefca 494 Gene3D G3DSA:3.30.420.40 267 451 2.6E-22 T 14-09-2016 ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 SMART SM00829 12 342 3.0E-6 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 PANTHER PTHR11695 17 353 3.5E-144 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 SUPERFAMILY SSF51735 149 312 5.06E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 PANTHER PTHR11695:SF587 17 353 3.5E-144 T 14-09-2016 ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 Gene3D G3DSA:3.90.180.10 5 180 6.3E-68 T 14-09-2016 IPR011032 GroES-like ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 Gene3D G3DSA:3.40.50.720 181 292 6.7E-23 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 144 6.0E-31 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 SUPERFAMILY SSF50129 6 175 1.98E-54 T 14-09-2016 IPR011032 GroES-like ccrud_RS01705 682e0017b0a43e74b08d9874feccaa4f 353 Pfam PF00107 Zinc-binding dehydrogenase 186 308 4.4E-20 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS02350 f76a1c837a8fa28d5c0f1acd7ffd4400 298 Pfam PF01040 UbiA prenyltransferase family 29 260 3.5E-35 T 14-09-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 ccrud_RS02350 f76a1c837a8fa28d5c0f1acd7ffd4400 298 PANTHER PTHR13929 13 298 1.0E-62 T 14-09-2016 ccrud_RS02350 f76a1c837a8fa28d5c0f1acd7ffd4400 298 Hamap MF_01937 1,4-dihydroxy-2-naphthoate octaprenyltransferase [menA]. 12 295 21.144 T 14-09-2016 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase GO:0009234|GO:0016021|GO:0046428 KEGG: 00130+2.5.1.74|MetaCyc: PWY-5839|MetaCyc: PWY-5851|MetaCyc: PWY-5852|MetaCyc: PWY-5853|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 ccrud_RS02350 f76a1c837a8fa28d5c0f1acd7ffd4400 298 PANTHER PTHR13929:SF0 13 298 1.0E-62 T 14-09-2016 ccrud_RS02350 f76a1c837a8fa28d5c0f1acd7ffd4400 298 TIGRFAM TIGR00751 menA: 1,4-dihydroxy-2-naphthoate octaprenyltransferase 21 293 5.2E-87 T 14-09-2016 ccrud_RS02350 f76a1c837a8fa28d5c0f1acd7ffd4400 298 PIRSF PIRSF005355 6 298 2.2E-85 T 14-09-2016 IPR026046 UbiA prenyltransferase domain containing protein 1 GO:0004659 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 1 447 44.352 T 14-09-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 SUPERFAMILY SSF53738 4 183 3.22E-46 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 Gene3D G3DSA:3.40.120.10 179 252 5.8E-24 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 98 107 - T 14-09-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 137 3.9E-42 T 14-09-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 Gene3D G3DSA:3.40.120.10 3 149 3.7E-45 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 Gene3D G3DSA:3.40.120.10 253 370 5.7E-33 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 260 368 9.1E-32 T 14-09-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 SUPERFAMILY SSF55957 360 446 9.81E-22 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 SUPERFAMILY SSF53738 160 259 2.79E-28 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 443 1.2E-11 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 97 111 1.9E-13 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 236 251 1.9E-13 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 176 195 1.9E-13 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 PANTHER PTHR22573:SF15 1 446 2.5E-146 T 14-09-2016 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 Gene3D G3DSA:3.30.310.50 372 446 3.0E-18 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 SUPERFAMILY SSF53738 260 368 1.41E-28 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 5 445 2.8E-176 T 14-09-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 161 256 1.8E-19 T 14-09-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS02975 44b38e76ad9dbb89e2a2f766a0dd7945 447 PANTHER PTHR22573 1 446 2.5E-146 T 14-09-2016 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 SMART SM01130 13 299 2.2E-114 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 PIRSF PIRSF001365 12 301 3.8E-79 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 13 297 54.771 T 14-09-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 PANTHER PTHR12128:SF34 1 301 1.8E-110 T 14-09-2016 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 50 67 - T 14-09-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 Gene3D G3DSA:3.20.20.70 13 301 3.7E-103 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 18 296 7.9E-79 T 14-09-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 SUPERFAMILY SSF51569 14 301 2.3E-89 T 14-09-2016 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 140 157 1.1E-31 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 115 131 1.1E-31 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 47 68 1.1E-31 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 PRINTS PR00146 Dihydrodipicolinate synthase signature 83 101 1.1E-31 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 145 175 - T 14-09-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 Pfam PF00701 Dihydrodipicolinate synthetase family 14 297 3.8E-78 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS08555 73fe7caf5562e3718c7ceabdb5cd2cb7 301 PANTHER PTHR12128 1 301 1.8E-110 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS13420 518ee2f5174b8bb8ab513784b7545e26 322 PANTHER PTHR11079 3 315 5.5E-54 T 14-09-2016 ccrud_RS13420 518ee2f5174b8bb8ab513784b7545e26 322 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 142 156 - T 14-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS13420 518ee2f5174b8bb8ab513784b7545e26 322 PANTHER PTHR11079:SF61 3 315 5.5E-54 T 14-09-2016 ccrud_RS13420 518ee2f5174b8bb8ab513784b7545e26 322 Pfam PF00849 RNA pseudouridylate synthase 103 265 8.2E-16 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS13420 518ee2f5174b8bb8ab513784b7545e26 322 SUPERFAMILY SSF55120 89 318 8.64E-44 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS04290 e9f5f24eebfac47e9452beae92f7c7e4 78 Gene3D G3DSA:2.30.170.40 2 77 8.9E-33 T 14-09-2016 ccrud_RS04290 e9f5f24eebfac47e9452beae92f7c7e4 78 SUPERFAMILY SSF143800 2 77 5.49E-27 T 14-09-2016 ccrud_RS04290 e9f5f24eebfac47e9452beae92f7c7e4 78 Pfam PF00830 Ribosomal L28 family 4 61 2.6E-24 T 14-09-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 ccrud_RS04290 e9f5f24eebfac47e9452beae92f7c7e4 78 PANTHER PTHR13528 1 74 1.8E-29 T 14-09-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 ccrud_RS04290 e9f5f24eebfac47e9452beae92f7c7e4 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 20.69 T 14-09-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04290 e9f5f24eebfac47e9452beae92f7c7e4 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 6.0E-26 T 14-09-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS01435 af31dbbfbeff045c86b88c6b0014946a 302 PANTHER PTHR31302 1 126 9.3E-43 T 14-09-2016 ccrud_RS01435 af31dbbfbeff045c86b88c6b0014946a 302 PANTHER PTHR31302 146 302 9.3E-43 T 14-09-2016 ccrud_RS01435 af31dbbfbeff045c86b88c6b0014946a 302 PANTHER PTHR31302:SF6 1 126 9.3E-43 T 14-09-2016 ccrud_RS01435 af31dbbfbeff045c86b88c6b0014946a 302 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 55 236 4.3E-7 T 14-09-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type ccrud_RS01435 af31dbbfbeff045c86b88c6b0014946a 302 Gene3D G3DSA:3.60.21.10 53 252 2.9E-15 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS01435 af31dbbfbeff045c86b88c6b0014946a 302 SUPERFAMILY SSF56300 51 301 1.55E-24 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS01435 af31dbbfbeff045c86b88c6b0014946a 302 PANTHER PTHR31302:SF6 146 302 9.3E-43 T 14-09-2016 ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 Gene3D G3DSA:3.30.300.20 266 330 9.3E-30 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 SUPERFAMILY SSF69705 3 103 1.31E-19 T 14-09-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 79 330 1.4E-91 T 14-09-2016 IPR010213 Transcription termination factor NusA GO:0003723 ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 PANTHER PTHR22648 1 327 1.6E-99 T 14-09-2016 ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 Gene3D G3DSA:2.40.50.140 110 186 1.5E-22 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 SUPERFAMILY SSF50249 113 187 4.99E-15 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 Pfam PF13184 NusA-like KH domain 218 286 1.5E-24 T 14-09-2016 IPR025249 KH domain, NusA-like GO:0003723 ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 SUPERFAMILY SSF54814 188 266 7.85E-27 T 14-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 Gene3D G3DSA:3.30.300.20 187 265 4.9E-33 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 SUPERFAMILY SSF54814 267 330 1.63E-16 T 14-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 Gene3D G3DSA:3.30.1480.10 3 103 1.3E-18 T 14-09-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 1 331 22.922 T 14-09-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 ccrud_RS08635 288c6187153044669790a1dec8c04ad9 332 PANTHER PTHR22648:SF0 1 327 1.6E-99 T 14-09-2016 ccrud_RS00780 8272d1d3c250999c5d8ea570d2fb06d4 114 SUPERFAMILY SSF46767 7 71 3.92E-12 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 ccrud_RS00780 8272d1d3c250999c5d8ea570d2fb06d4 114 PANTHER PTHR10815 13 63 1.3E-13 T 14-09-2016 ccrud_RS00780 8272d1d3c250999c5d8ea570d2fb06d4 114 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 11 66 2.5E-13 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 ccrud_RS00780 8272d1d3c250999c5d8ea570d2fb06d4 114 PANTHER PTHR10815:SF2 13 63 1.3E-13 T 14-09-2016 ccrud_RS00780 8272d1d3c250999c5d8ea570d2fb06d4 114 Gene3D G3DSA:1.10.10.10 8 72 6.3E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 PANTHER PTHR30175:SF1 6 566 7.5E-173 T 14-09-2016 ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 PANTHER PTHR30175 6 566 7.5E-173 T 14-09-2016 ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 Gene3D G3DSA:2.70.70.10 462 615 2.4E-53 T 14-09-2016 ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 Pfam PF02378 Phosphotransferase system, EIIC 134 398 6.0E-29 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 23 40 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 SUPERFAMILY SSF51261 465 614 3.31E-48 T 14-09-2016 IPR011055 Duplicated hybrid motif ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 TIGRFAM TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component 9 616 2.4E-237 T 14-09-2016 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component GO:0005886|GO:0008982|GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 Pfam PF00367 phosphotransferase system, EIIB 13 45 1.1E-14 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 Gene3D G3DSA:3.30.1360.60 10 84 5.7E-23 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 471 594 6.4E-47 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 472 591 4.4E-38 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 533 545 - T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS12830 3690572e5322b4cc6497532bbfd71ae5 618 SUPERFAMILY SSF55604 12 84 1.83E-19 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 ccrud_RS09145 97446d489da81ac27f466013621edbcc 261 SUPERFAMILY SSF51366 6 238 1.95E-35 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS09145 97446d489da81ac27f466013621edbcc 261 PANTHER PTHR22854:SF2 72 238 7.0E-18 T 14-09-2016 ccrud_RS09145 97446d489da81ac27f466013621edbcc 261 Gene3D G3DSA:3.20.20.70 8 238 3.0E-34 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS09145 97446d489da81ac27f466013621edbcc 261 PANTHER PTHR22854 72 238 7.0E-18 T 14-09-2016 ccrud_RS09145 97446d489da81ac27f466013621edbcc 261 Pfam PF00218 Indole-3-glycerol phosphate synthase 66 238 1.3E-21 T 14-09-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 ccrud_RS11755 ee7813ffe64ff4cb31934ea4fafe06ca 343 Gene3D G3DSA:3.20.20.10 13 213 4.3E-20 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS11755 ee7813ffe64ff4cb31934ea4fafe06ca 343 SMART SM01119 232 326 3.1E-30 T 14-09-2016 IPR026956 D-serine dehydratase-like domain ccrud_RS11755 ee7813ffe64ff4cb31934ea4fafe06ca 343 Pfam PF01168 Alanine racemase, N-terminal domain 10 217 3.4E-26 T 14-09-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS11755 ee7813ffe64ff4cb31934ea4fafe06ca 343 SUPERFAMILY SSF51419 10 219 3.76E-31 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS11755 ee7813ffe64ff4cb31934ea4fafe06ca 343 Pfam PF14031 Putative serine dehydratase domain 232 324 1.7E-17 T 14-09-2016 IPR026956 D-serine dehydratase-like domain ccrud_RS11755 ee7813ffe64ff4cb31934ea4fafe06ca 343 PANTHER PTHR28004 3 343 3.1E-66 T 14-09-2016 ccrud_RS10585 5b28b4255df4766536f607d9c489ecd3 195 PANTHER PTHR31223 10 190 3.9E-77 T 14-09-2016 ccrud_RS10585 5b28b4255df4766536f607d9c489ecd3 195 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 13 187 4.1E-58 T 14-09-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG ccrud_RS10585 5b28b4255df4766536f607d9c489ecd3 195 Pfam PF03641 Possible lysine decarboxylase 55 185 1.1E-40 T 14-09-2016 IPR031100 LOG family ccrud_RS10585 5b28b4255df4766536f607d9c489ecd3 195 Gene3D G3DSA:3.40.50.450 10 192 1.5E-67 T 14-09-2016 ccrud_RS10585 5b28b4255df4766536f607d9c489ecd3 195 SUPERFAMILY SSF102405 11 188 6.87E-58 T 14-09-2016 ccrud_RS10585 5b28b4255df4766536f607d9c489ecd3 195 PANTHER PTHR31223:SF0 10 190 3.9E-77 T 14-09-2016 ccrud_RS11055 5629eb6facbde74dfd30637fe8964c7b 188 PANTHER PTHR11019:SF50 75 188 4.1E-14 T 14-09-2016 ccrud_RS11055 5629eb6facbde74dfd30637fe8964c7b 188 Pfam PF12833 Helix-turn-helix domain 100 181 7.0E-15 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS11055 5629eb6facbde74dfd30637fe8964c7b 188 SMART SM00342 94 180 4.4E-18 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS11055 5629eb6facbde74dfd30637fe8964c7b 188 Gene3D G3DSA:1.10.10.60 130 184 2.3E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS11055 5629eb6facbde74dfd30637fe8964c7b 188 SUPERFAMILY SSF46689 130 184 3.76E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS11055 5629eb6facbde74dfd30637fe8964c7b 188 PANTHER PTHR11019 75 188 4.1E-14 T 14-09-2016 ccrud_RS11630 10bd6d1ec353023d7f5583781576abe3 229 PANTHER PTHR15854 60 229 2.6E-50 T 14-09-2016 ccrud_RS11630 10bd6d1ec353023d7f5583781576abe3 229 Pfam PF08768 Domain of unknown function (DUF1794) 74 226 1.2E-41 T 14-09-2016 IPR014878 Domain of unknown function DUF1794 ccrud_RS11630 10bd6d1ec353023d7f5583781576abe3 229 Hamap MF_01297 UPF0678 fatty acid-binding protein-like protein . 66 228 30.459 T 14-09-2016 IPR022939 Uncharacterised protein family UPF0678 ccrud_RS11630 10bd6d1ec353023d7f5583781576abe3 229 PANTHER PTHR15854:SF6 60 229 2.6E-50 T 14-09-2016 ccrud_RS11630 10bd6d1ec353023d7f5583781576abe3 229 SUPERFAMILY SSF50814 68 227 1.9E-37 T 14-09-2016 IPR011038 Calycin-like ccrud_RS13680 a2b86e0e29a4893d1ae07f8f4aba3d06 168 Pfam PF13630 SdpI/YhfL protein family 30 99 2.5E-17 T 14-09-2016 IPR025962 SdpI/YhfL protein family ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 ProSitePatterns PS01057 SAICAR synthetase signature 1. 95 109 - T 14-09-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 9 289 8.5E-75 T 14-09-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 PANTHER PTHR11609 14 286 4.6E-109 T 14-09-2016 ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 Gene3D G3DSA:3.30.470.20 107 237 1.7E-55 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 PANTHER PTHR11609:SF6 14 286 4.6E-109 T 14-09-2016 ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 Gene3D G3DSA:3.30.200.20 3 106 2.7E-40 T 14-09-2016 ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 Pfam PF01259 SAICAR synthetase 10 258 1.7E-99 T 14-09-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 SUPERFAMILY SSF56104 4 289 3.27E-97 T 14-09-2016 ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 8 286 24.934 T 14-09-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 ccrud_RS11715 f330dff8adcacbe36da59559f653cf98 297 ProSitePatterns PS01058 SAICAR synthetase signature 2. 194 202 - T 14-09-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 ccrud_RS04520 0561ee0344d539fa89202b7ecfb5f4f9 158 Gene3D G3DSA:3.40.30.10 7 156 4.1E-38 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS04520 0561ee0344d539fa89202b7ecfb5f4f9 158 SUPERFAMILY SSF52833 17 151 2.13E-22 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS04520 0561ee0344d539fa89202b7ecfb5f4f9 158 Pfam PF08534 Redoxin 23 140 2.4E-6 T 14-09-2016 IPR013740 Redoxin GO:0016491 ccrud_RS09165 5dfe07043a01d8c0d788bc2c250e5e20 275 Pfam PF00459 Inositol monophosphatase family 6 257 1.9E-40 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS09165 5dfe07043a01d8c0d788bc2c250e5e20 275 SUPERFAMILY SSF56655 4 257 1.57E-54 T 14-09-2016 ccrud_RS09165 5dfe07043a01d8c0d788bc2c250e5e20 275 PANTHER PTHR20854 1 272 4.2E-43 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS09165 5dfe07043a01d8c0d788bc2c250e5e20 275 Gene3D G3DSA:3.30.540.10 3 143 1.3E-31 T 14-09-2016 ccrud_RS09165 5dfe07043a01d8c0d788bc2c250e5e20 275 Gene3D G3DSA:3.40.190.80 164 258 3.9E-18 T 14-09-2016 ccrud_RS09165 5dfe07043a01d8c0d788bc2c250e5e20 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 37 57 4.5E-19 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS09165 5dfe07043a01d8c0d788bc2c250e5e20 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 206 230 4.5E-19 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS09165 5dfe07043a01d8c0d788bc2c250e5e20 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 76 92 4.5E-19 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS09165 5dfe07043a01d8c0d788bc2c250e5e20 275 PRINTS PR00377 Inositol monophosphatase superfamily signature 175 196 4.5E-19 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 12 212 5.0E-24 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 90 101 - T 14-09-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 14 275 1.5E-60 T 14-09-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 Gene3D G3DSA:3.30.950.10 120 230 1.1E-39 T 14-09-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 11 229 31.393 T 14-09-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 PANTHER PTHR21091:SF18 12 228 7.3E-62 T 14-09-2016 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 PANTHER PTHR21091 12 228 7.3E-62 T 14-09-2016 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 PIRSF PIRSF005917 3 282 1.9E-86 T 14-09-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 SUPERFAMILY SSF53790 12 227 1.22E-66 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 ccrud_RS04400 b11ddf7eab3833a059c6281defa3042e 282 Gene3D G3DSA:3.40.1010.10 14 119 5.7E-7 T 14-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Gene3D G3DSA:3.30.420.40 292 333 5.9E-33 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Gene3D G3DSA:3.30.420.40 167 201 5.9E-33 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Gene3D G3DSA:3.30.30.30 39 100 6.1E-17 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Gene3D G3DSA:3.30.420.40 101 166 4.1E-55 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Gene3D G3DSA:3.30.420.40 4 38 4.1E-55 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PRINTS PR00301 70kDa heat shock protein signature 339 359 2.6E-75 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PRINTS PR00301 70kDa heat shock protein signature 362 381 2.6E-75 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PRINTS PR00301 70kDa heat shock protein signature 54 62 2.6E-75 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PRINTS PR00301 70kDa heat shock protein signature 114 134 2.6E-75 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PRINTS PR00301 70kDa heat shock protein signature 443 459 2.6E-75 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PRINTS PR00301 70kDa heat shock protein signature 3 16 2.6E-75 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PRINTS PR00301 70kDa heat shock protein signature 31 43 2.6E-75 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PRINTS PR00301 70kDa heat shock protein signature 307 323 2.6E-75 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PRINTS PR00301 70kDa heat shock protein signature 174 184 2.6E-75 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 608 35.895 T 14-09-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 4 577 1.2E-274 T 14-09-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 14-09-2016 IPR018181 Heat shock protein 70, conserved site ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 310 324 - T 14-09-2016 IPR018181 Heat shock protein 70, conserved site ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 SUPERFAMILY SSF100934 481 580 4.58E-16 T 14-09-2016 IPR029048 Heat shock protein 70kD, C-terminal domain ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Gene3D G3DSA:3.90.640.10 202 288 2.6E-28 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 SUPERFAMILY SSF53067 163 356 1.04E-62 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Pfam PF00012 Hsp70 protein 4 78 1.7E-28 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Pfam PF00012 Hsp70 protein 83 578 5.5E-216 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PANTHER PTHR19375 2 618 0.0 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 168 181 - T 14-09-2016 IPR018181 Heat shock protein 70, conserved site ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 SUPERFAMILY SSF53067 2 159 3.56E-56 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 PANTHER PTHR19375:SF173 2 618 0.0 T 14-09-2016 ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Gene3D G3DSA:2.60.34.10 364 506 2.8E-73 T 14-09-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 Gene3D G3DSA:1.20.1270.10 507 577 9.7E-24 T 14-09-2016 IPR029048 Heat shock protein 70kD, C-terminal domain ccrud_RS12610 7af8ec116fa9ebeee529a0b77750af06 618 SUPERFAMILY SSF100920 358 514 1.44E-62 T 14-09-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 PANTHER PTHR30294 404 618 3.0E-36 T 14-09-2016 ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 SUPERFAMILY SSF101967 305 401 2.75E-7 T 14-09-2016 ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 PANTHER PTHR30294:SF4 404 618 3.0E-36 T 14-09-2016 ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 PANTHER PTHR30294:SF4 20 195 3.0E-36 T 14-09-2016 ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 TIGRFAM TIGR03062 pip_yhgE_Cterm: YhgE/Pip C-terminal domain 398 606 4.6E-60 T 14-09-2016 IPR017501 Phage infection protein, YhgE, C-terminal ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 Pfam PF01061 ABC-2 type transporter 420 570 1.1E-10 T 14-09-2016 IPR013525 ABC-2 type transporter GO:0016020 ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 Gene3D G3DSA:2.150.10.10 310 401 9.6E-4 T 14-09-2016 IPR011049 Serralysin-like metalloprotease, C-terminal ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 TIGRFAM TIGR03061 pip_yhgE_Nterm: YhgE/Pip N-terminal domain 8 164 1.6E-42 T 14-09-2016 IPR017500 Phage infection protein, YhgE, N-terminal ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 Pfam PF12698 ABC-2 family transporter protein 24 155 2.3E-13 T 14-09-2016 ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 333 358 1.7E-5 T 14-09-2016 IPR023908 xxxLxxG heptad repeat ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 319 346 7.2E-7 T 14-09-2016 IPR023908 xxxLxxG heptad repeat ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 354 379 2.8E-4 T 14-09-2016 IPR023908 xxxLxxG heptad repeat ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 185 209 3.7E-4 T 14-09-2016 IPR023908 xxxLxxG heptad repeat ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 Gene3D G3DSA:3.40.1710.10 52 156 9.6E-4 T 14-09-2016 ccrud_RS07935 52de58a0bc5a7d003dd5fbc9f8ab0d7d 619 PANTHER PTHR30294 20 195 3.0E-36 T 14-09-2016 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 Gene3D G3DSA:1.10.630.10 26 430 3.7E-81 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 SUPERFAMILY SSF54292 644 748 4.06E-25 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 Pfam PF00175 Oxidoreductase NAD-binding domain 550 638 7.1E-6 T 14-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 SUPERFAMILY SSF48264 17 429 1.19E-67 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 SUPERFAMILY SSF63380 441 538 8.17E-23 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 702 710 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 Pfam PF00067 Cytochrome P450 227 399 1.1E-23 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 Gene3D G3DSA:3.40.50.80 545 649 1.5E-23 T 14-09-2016 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 PANTHER PTHR22924 395 709 6.9E-49 T 14-09-2016 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 PRINTS PR00409 Phthalate dioxygenase reductase family signature 490 504 6.5E-22 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 PRINTS PR00409 Phthalate dioxygenase reductase family signature 549 568 6.5E-22 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 PRINTS PR00409 Phthalate dioxygenase reductase family signature 574 583 6.5E-22 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 PRINTS PR00409 Phthalate dioxygenase reductase family signature 469 479 6.5E-22 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 PRINTS PR00409 Phthalate dioxygenase reductase family signature 624 632 6.5E-22 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 PRINTS PR00409 Phthalate dioxygenase reductase family signature 514 528 6.5E-22 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 676 744 2.8E-11 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 Gene3D G3DSA:3.10.20.30 650 748 2.7E-27 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 SUPERFAMILY SSF52343 536 659 7.86E-27 T 14-09-2016 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 Gene3D G3DSA:2.40.30.10 440 539 4.8E-29 T 14-09-2016 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 372 381 - T 14-09-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 ccrud_RS13780 99be13636a389f7e274e5502225a1bc0 755 PANTHER PTHR22924:SF20 395 709 6.9E-49 T 14-09-2016 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 Pfam PF00710 Asparaginase, N-terminal 21 193 6.9E-46 T 14-09-2016 IPR027474 L-asparaginase, N-terminal ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 SMART SM00870 21 325 2.0E-97 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 24 32 - T 14-09-2016 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 PANTHER PTHR11707 19 278 9.9E-26 T 14-09-2016 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 PRINTS PR00139 Asparaginase/glutaminase family signature 260 278 1.0E-16 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 PRINTS PR00139 Asparaginase/glutaminase family signature 22 33 1.0E-16 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 PRINTS PR00139 Asparaginase/glutaminase family signature 100 118 1.0E-16 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 PANTHER PTHR11707:SF3 19 278 9.9E-26 T 14-09-2016 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 Gene3D G3DSA:3.40.50.1170 20 192 1.1E-47 T 14-09-2016 IPR027474 L-asparaginase, N-terminal ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 Gene3D G3DSA:3.40.50.40 214 323 3.1E-26 T 14-09-2016 IPR027473 L-asparaginase, C-terminal domain ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 PIRSF PIRSF500176 19 324 1.0E-80 T 14-09-2016 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 SUPERFAMILY SSF53774 20 323 1.7E-76 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 ccrud_RS09385 76fdf4ed442fc3fe79f6a6cfc17a7cae 325 PIRSF PIRSF001220 17 324 3.9E-84 T 14-09-2016 IPR006034 Asparaginase/glutaminase GO:0006520 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 Pfam PF00334 Nucleoside diphosphate kinase 3 135 3.2E-52 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 Gene3D G3DSA:3.30.70.141 2 135 4.0E-56 T 14-09-2016 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 14-09-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 49 68 5.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 5.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 5 27 5.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 69 86 5.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 5.1E-40 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 SMART SM00562 2 136 3.3E-74 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 PANTHER PTHR11349 3 134 1.1E-69 T 14-09-2016 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 2 136 33.633 T 14-09-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS10540 252feb83bf1fa10704edb5d3a8611681 136 SUPERFAMILY SSF54919 1 135 4.32E-54 T 14-09-2016 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 201 4.0E-78 T 14-09-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 SMART SM00363 91 155 7.2E-15 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 Gene3D G3DSA:1.10.1050.10 1 96 5.0E-37 T 14-09-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 SMART SM01390 3 90 9.1E-42 T 14-09-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 ProSitePatterns PS00632 Ribosomal protein S4 signature. 89 113 - T 14-09-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 PANTHER PTHR11831:SF4 1 201 4.0E-74 T 14-09-2016 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 201 33.685 T 14-09-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 Pfam PF01479 S4 domain 92 137 5.9E-17 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 SUPERFAMILY SSF55174 3 201 7.59E-63 T 14-09-2016 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 Gene3D G3DSA:3.10.290.10 97 185 3.3E-27 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 PANTHER PTHR11831 1 201 4.0E-74 T 14-09-2016 IPR022801 Ribosomal protein S4/S9 ccrud_RS02895 f6edb7413be11d3e8ed14ecd45c345d3 201 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 90 9.3E-26 T 14-09-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 ccrud_RS01075 da834f9d6b148004169c4a8478eddac4 391 Gene3D G3DSA:3.40.640.10 45 228 1.9E-20 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS01075 da834f9d6b148004169c4a8478eddac4 391 Pfam PF00266 Aminotransferase class-V 47 210 5.3E-9 T 14-09-2016 IPR000192 Aminotransferase class V domain ccrud_RS01075 da834f9d6b148004169c4a8478eddac4 391 SUPERFAMILY SSF53383 3 389 9.05E-37 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS01075 da834f9d6b148004169c4a8478eddac4 391 PANTHER PTHR11601 13 390 9.9E-33 T 14-09-2016 ccrud_RS01075 da834f9d6b148004169c4a8478eddac4 391 Gene3D G3DSA:3.90.1150.10 269 390 4.6E-9 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS01075 da834f9d6b148004169c4a8478eddac4 391 PANTHER PTHR11601:SF22 13 390 9.9E-33 T 14-09-2016 ccrud_RS13220 b6b6d74558b09a5cfc68eba137837479 293 SUPERFAMILY SSF63817 109 251 3.27E-42 T 14-09-2016 IPR023365 Sortase domain ccrud_RS13220 b6b6d74558b09a5cfc68eba137837479 293 PANTHER PTHR33393 119 287 2.7E-12 T 14-09-2016 ccrud_RS13220 b6b6d74558b09a5cfc68eba137837479 293 Gene3D G3DSA:2.40.260.10 115 250 7.1E-44 T 14-09-2016 IPR023365 Sortase domain ccrud_RS13220 b6b6d74558b09a5cfc68eba137837479 293 TIGRFAM TIGR01076 sortase_fam: sortase 122 250 8.3E-45 T 14-09-2016 IPR005754 Sortase family ccrud_RS13220 b6b6d74558b09a5cfc68eba137837479 293 Pfam PF04203 Sortase family 123 248 2.0E-25 T 14-09-2016 IPR005754 Sortase family ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 Pfam PF06826 Predicted Permease Membrane Region 12 173 3.5E-37 T 14-09-2016 IPR006512 YidE/YbjL duplication ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 Pfam PF06826 Predicted Permease Membrane Region 360 530 2.0E-40 T 14-09-2016 IPR006512 YidE/YbjL duplication ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 17 159 7.7E-25 T 14-09-2016 IPR006512 YidE/YbjL duplication ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 364 517 2.8E-50 T 14-09-2016 IPR006512 YidE/YbjL duplication ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 SUPERFAMILY SSF116726 268 346 4.19E-10 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 Gene3D G3DSA:3.30.70.1450 287 346 1.1E-5 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 PANTHER PTHR30445:SF1 1 533 2.0E-122 T 14-09-2016 ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 PANTHER PTHR30445 1 533 2.0E-122 T 14-09-2016 ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 ProSitePatterns PS01054 Transaldolase signature 1. 487 495 - T 14-09-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 ccrud_RS03010 8d70bb309ce94590ebc0b4047e62da1c 533 Pfam PF02080 TrkA-C domain 280 346 4.0E-12 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ccrud_RS07780 83433abd5220d919856186961be43808 1113 SUPERFAMILY SSF52440 569 691 5.75E-45 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS07780 83433abd5220d919856186961be43808 1113 Pfam PF02142 MGS-like domain 991 1079 7.1E-19 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain ccrud_RS07780 83433abd5220d919856186961be43808 1113 Gene3D G3DSA:1.10.1030.10 405 544 7.5E-43 T 14-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 SMART SM01096 432 555 5.4E-56 T 14-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1089 0.0 T 14-09-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 PANTHER PTHR11405:SF5 1 1107 0.0 T 14-09-2016 ccrud_RS07780 83433abd5220d919856186961be43808 1113 PANTHER PTHR11405 1 1107 0.0 T 14-09-2016 ccrud_RS07780 83433abd5220d919856186961be43808 1113 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 435 555 2.6E-35 T 14-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 855 862 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ccrud_RS07780 83433abd5220d919856186961be43808 1113 Gene3D G3DSA:3.30.470.20 205 404 1.6E-71 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS07780 83433abd5220d919856186961be43808 1113 Gene3D G3DSA:3.30.470.20 762 964 8.1E-70 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS07780 83433abd5220d919856186961be43808 1113 SUPERFAMILY SSF56059 133 405 2.47E-99 T 14-09-2016 ccrud_RS07780 83433abd5220d919856186961be43808 1113 SUPERFAMILY SSF48108 401 558 1.7E-41 T 14-09-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 Gene3D G3DSA:3.30.1490.20 148 204 1.9E-20 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS07780 83433abd5220d919856186961be43808 1113 Gene3D G3DSA:3.30.1490.20 703 761 1.8E-25 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS07780 83433abd5220d919856186961be43808 1113 SUPERFAMILY SSF56059 690 964 1.26E-94 T 14-09-2016 ccrud_RS07780 83433abd5220d919856186961be43808 1113 Gene3D G3DSA:3.40.50.1380 970 1110 7.0E-38 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain ccrud_RS07780 83433abd5220d919856186961be43808 1113 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 1.3E-59 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 244 261 1.3E-59 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 384 402 1.3E-59 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 173 185 1.3E-59 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 302 331 1.3E-59 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 1.3E-59 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 209 228 1.3E-59 T 14-09-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 726 740 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ccrud_RS07780 83433abd5220d919856186961be43808 1113 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 133 339 3.3E-65 T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ccrud_RS07780 83433abd5220d919856186961be43808 1113 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 690 891 2.1E-36 T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ccrud_RS07780 83433abd5220d919856186961be43808 1113 SMART SM00851 987 1079 9.9E-24 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain ccrud_RS07780 83433abd5220d919856186961be43808 1113 Gene3D G3DSA:3.40.50.20 545 678 4.5E-55 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS07780 83433abd5220d919856186961be43808 1113 Gene3D G3DSA:3.40.50.20 4 113 3.2E-39 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS07780 83433abd5220d919856186961be43808 1113 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1100 12.966 T 14-09-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07780 83433abd5220d919856186961be43808 1113 SUPERFAMILY SSF52335 974 1108 3.01E-30 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain ccrud_RS07780 83433abd5220d919856186961be43808 1113 SUPERFAMILY SSF52440 1 132 1.25E-42 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS00680 de2e82cc00913a15e21f1ebc6605b845 381 Pfam PF00480 ROK family 89 202 3.6E-6 T 14-09-2016 IPR000600 ROK family ccrud_RS00680 de2e82cc00913a15e21f1ebc6605b845 381 Gene3D G3DSA:1.10.10.10 20 81 1.6E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00680 de2e82cc00913a15e21f1ebc6605b845 381 SUPERFAMILY SSF53067 89 355 3.28E-14 T 14-09-2016 ccrud_RS00680 de2e82cc00913a15e21f1ebc6605b845 381 Gene3D G3DSA:3.30.420.40 88 203 3.1E-13 T 14-09-2016 ccrud_RS00680 de2e82cc00913a15e21f1ebc6605b845 381 Pfam PF12802 MarR family 29 66 2.1E-6 T 14-09-2016 ccrud_RS00680 de2e82cc00913a15e21f1ebc6605b845 381 SUPERFAMILY SSF46785 18 80 2.77E-9 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00097 Anthranilate synthase component II signature 3 17 4.9E-27 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00097 Anthranilate synthase component II signature 98 106 4.9E-27 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00097 Anthranilate synthase component II signature 161 174 4.9E-27 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00097 Anthranilate synthase component II signature 45 54 4.9E-27 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00097 Anthranilate synthase component II signature 118 130 4.9E-27 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00097 Anthranilate synthase component II signature 73 84 4.9E-27 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 Pfam PF00425 chorismate binding enzyme 354 607 3.3E-87 T 14-09-2016 IPR015890 Chorismate-utilising enzyme, C-terminal ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 183 2.2E-44 T 14-09-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 Pfam PF00117 Glutamine amidotransferase class-I 5 182 6.1E-40 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00096 Glutamine amidotransferase superfamily signature 161 174 5.6E-11 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00096 Glutamine amidotransferase superfamily signature 73 84 5.6E-11 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00096 Glutamine amidotransferase superfamily signature 45 54 5.6E-11 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 SUPERFAMILY SSF56322 191 616 1.83E-121 T 14-09-2016 IPR005801 ADC synthase GO:0009058 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PANTHER PTHR11236 1 615 1.1E-229 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PANTHER PTHR11236:SF18 1 615 1.1E-229 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 SUPERFAMILY SSF52317 1 189 1.03E-49 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 Gene3D G3DSA:3.60.120.10 191 616 3.6E-135 T 14-09-2016 IPR005801 ADC synthase GO:0009058 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 42 56 2.7E-6 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 73 89 2.7E-6 T 14-09-2016 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 Pfam PF04715 Anthranilate synthase component I, N terminal region 249 308 4.5E-5 T 14-09-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 Gene3D G3DSA:3.40.50.880 1 184 1.2E-57 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS04900 12a160177bc71a2ca1908a400a85add9 620 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 272 611 1.8E-109 T 14-09-2016 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543|UniPathway: UPA00077 ccrud_RS06150 5b38581983c6ca43be09fb12161a525c 340 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 232 251 - T 14-09-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 ccrud_RS06150 5b38581983c6ca43be09fb12161a525c 340 SUPERFAMILY SSF53659 2 338 1.52E-109 T 14-09-2016 ccrud_RS06150 5b38581983c6ca43be09fb12161a525c 340 PANTHER PTHR11835:SF49 1 339 1.5E-181 T 14-09-2016 ccrud_RS06150 5b38581983c6ca43be09fb12161a525c 340 SMART SM01329 2 334 3.5E-161 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 ccrud_RS06150 5b38581983c6ca43be09fb12161a525c 340 Hamap MF_01035 3-isopropylmalate dehydrogenase [leuB]. 1 338 60.521 T 14-09-2016 IPR023698 3-isopropylmalate dehydrogenase GO:0003862|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 ccrud_RS06150 5b38581983c6ca43be09fb12161a525c 340 PANTHER PTHR11835 1 339 1.5E-181 T 14-09-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 ccrud_RS06150 5b38581983c6ca43be09fb12161a525c 340 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 2 318 4.1E-90 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 ccrud_RS06150 5b38581983c6ca43be09fb12161a525c 340 Gene3D G3DSA:3.40.718.10 2 332 7.3E-114 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 1077 1219 1.4E-46 T 14-09-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 104 337 4.6E-51 T 14-09-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 Pfam PF02779 Transketolase, pyrimidine binding domain 876 1072 1.6E-51 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 SMART SM00861 876 1072 6.9E-41 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 PANTHER PTHR23152:SF4 320 1220 0.0 T 14-09-2016 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 SUPERFAMILY SSF52518 869 1077 2.06E-40 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 PANTHER PTHR23152 320 1220 0.0 T 14-09-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 368 1218 5.8E-291 T 14-09-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 Gene3D G3DSA:3.40.50.970 894 1083 2.1E-17 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 PIRSF PIRSF000157 1 1221 0.0 T 14-09-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 Gene3D G3DSA:3.30.559.10 95 337 1.3E-48 T 14-09-2016 IPR023213 Chloramphenicol acetyltransferase-like domain ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 Pfam PF00676 Dehydrogenase E1 component 490 814 3.5E-57 T 14-09-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 Gene3D G3DSA:3.40.50.970 446 814 2.9E-76 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 6 39 1.3E-11 T 14-09-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 SUPERFAMILY SSF52777 96 338 4.36E-52 T 14-09-2016 ccrud_RS05455 3ca174aed2d8d2c1cf0172e0946fe9a0 1221 SUPERFAMILY SSF52518 405 812 3.32E-85 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS07075 40c875aa72eb3e35abc5b02745b3e76d 265 Gene3D G3DSA:1.10.3720.10 68 264 3.9E-29 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS07075 40c875aa72eb3e35abc5b02745b3e76d 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 264 3.2E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS07075 40c875aa72eb3e35abc5b02745b3e76d 265 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 17 264 2.6E-79 T 14-09-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 ccrud_RS07075 40c875aa72eb3e35abc5b02745b3e76d 265 PANTHER PTHR30043:SF1 7 265 4.0E-62 T 14-09-2016 ccrud_RS07075 40c875aa72eb3e35abc5b02745b3e76d 265 SUPERFAMILY SSF161098 69 256 3.01E-33 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS07075 40c875aa72eb3e35abc5b02745b3e76d 265 PANTHER PTHR30043 7 265 4.0E-62 T 14-09-2016 ccrud_RS09155 16add7c4b51613867fd1d82c8bf6f66a 123 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 63 117 4.0E-24 T 14-09-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 ccrud_RS09155 16add7c4b51613867fd1d82c8bf6f66a 123 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 14 117 29.385 T 14-09-2016 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 ccrud_RS09155 16add7c4b51613867fd1d82c8bf6f66a 123 SUPERFAMILY SSF141734 14 118 8.11E-43 T 14-09-2016 ccrud_RS09155 16add7c4b51613867fd1d82c8bf6f66a 123 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 40 112 4.2E-31 T 14-09-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 ccrud_RS09155 16add7c4b51613867fd1d82c8bf6f66a 123 PANTHER PTHR21256 1 116 1.1E-48 T 14-09-2016 ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 SUPERFAMILY SSF55154 1 226 2.14E-45 T 14-09-2016 IPR033469 CYTH-like domain ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 Gene3D G3DSA:2.40.320.10 3 219 1.1E-54 T 14-09-2016 IPR023577 CYTH domain ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 Pfam PF01928 CYTH domain 5 172 4.0E-12 T 14-09-2016 IPR023577 CYTH domain ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 Pfam PF05235 CHAD domain 233 512 7.0E-58 T 14-09-2016 IPR007899 CHAD domain ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 PANTHER PTHR39339 411 543 9.8E-33 T 14-09-2016 ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 PANTHER PTHR39339 9 370 9.8E-33 T 14-09-2016 ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 PANTHER PTHR39339:SF1 411 543 9.8E-33 T 14-09-2016 ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 PANTHER PTHR39339:SF1 9 370 9.8E-33 T 14-09-2016 ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 SMART SM01118 4 210 3.7E-16 T 14-09-2016 IPR023577 CYTH domain ccrud_RS09825 fe4c3df54afe453d7bc7f48262c4dcec 575 SMART SM00880 232 545 9.3E-50 T 14-09-2016 IPR007899 CHAD domain ccrud_RS08285 f2fe9d1b92492364c44dd10045e2c79b 328 SUPERFAMILY SSF51735 1 315 8.96E-89 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS08285 f2fe9d1b92492364c44dd10045e2c79b 328 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 247 1.6E-57 T 14-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 ccrud_RS08285 f2fe9d1b92492364c44dd10045e2c79b 328 PANTHER PTHR10366 2 317 2.9E-101 T 14-09-2016 ccrud_RS08285 f2fe9d1b92492364c44dd10045e2c79b 328 PANTHER PTHR10366:SF39 2 317 2.9E-101 T 14-09-2016 ccrud_RS08285 f2fe9d1b92492364c44dd10045e2c79b 328 Gene3D G3DSA:3.90.25.10 170 317 5.3E-44 T 14-09-2016 ccrud_RS08285 f2fe9d1b92492364c44dd10045e2c79b 328 Gene3D G3DSA:3.40.50.720 1 169 2.1E-47 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS08285 f2fe9d1b92492364c44dd10045e2c79b 328 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 2 318 1.3E-114 T 14-09-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 SMART SM01209 102 291 3.1E-102 T 14-09-2016 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 SUPERFAMILY SSF52440 1 102 1.58E-29 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 SUPERFAMILY SSF56059 103 315 1.86E-48 T 14-09-2016 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 102 291 5.4E-62 T 14-09-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 SMART SM01210 326 415 8.5E-39 T 14-09-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 415 3.6E-140 T 14-09-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 101 2.2E-29 T 14-09-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 Gene3D G3DSA:3.30.1490.20 130 186 1.2E-15 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 415 39.539 T 14-09-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 Gene3D G3DSA:3.90.600.10 327 415 4.2E-28 T 14-09-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 PANTHER PTHR10520 1 420 1.1E-183 T 14-09-2016 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 285 292 - T 14-09-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 327 411 5.4E-26 T 14-09-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 Gene3D G3DSA:3.40.50.20 2 94 6.1E-30 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 SUPERFAMILY SSF51246 325 415 8.63E-24 T 14-09-2016 IPR011054 Rudiment single hybrid motif ccrud_RS11730 2b201603e0b1bfc6313d9bed71890b4d 421 Gene3D G3DSA:3.30.470.20 187 323 7.0E-53 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 PANTHER PTHR24220 10 362 5.3E-76 T 14-09-2016 ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 Gene3D G3DSA:3.40.50.300 253 441 2.2E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 SUPERFAMILY SSF52540 253 444 2.37E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 Pfam PF00005 ABC transporter 253 398 9.5E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 Pfam PF00005 ABC transporter 26 165 3.1E-20 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 SUPERFAMILY SSF52540 23 213 8.64E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 Gene3D G3DSA:3.40.50.300 14 213 1.1E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 PANTHER PTHR24220:SF66 10 362 5.3E-76 T 14-09-2016 ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 ProSitePatterns PS00211 ABC transporters family signature. 371 385 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 SMART SM00382 258 446 2.1E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05205 c78f995d5d7486111065e05609c10566 446 SMART SM00382 35 214 7.3E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 ProSitePatterns PS00810 ADP-glucose pyrophosphorylase signature 3. 200 210 - T 14-09-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 TIGRFAM TIGR02091 glgC: glucose-1-phosphate adenylyltransferase 11 383 1.6E-137 T 14-09-2016 IPR011831 Glucose-1-phosphate adenylyltransferase GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 SUPERFAMILY SSF51161 304 401 6.1E-17 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 SUPERFAMILY SSF53448 10 284 2.48E-68 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 SUPERFAMILY SSF53448 347 363 2.48E-68 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 Pfam PF00483 Nucleotidyl transferase 13 280 8.0E-66 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 PANTHER PTHR22572 12 383 7.2E-145 T 14-09-2016 ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 Gene3D G3DSA:3.90.550.10 330 373 1.3E-73 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 Gene3D G3DSA:3.90.550.10 12 291 1.3E-73 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 Hamap MF_00624 Glucose-1-phosphate adenylyltransferase [glgC]. 8 409 48.771 T 14-09-2016 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 ProSitePatterns PS00809 ADP-glucose pyrophosphorylase signature 2. 102 110 - T 14-09-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 PANTHER PTHR22572:SF10 12 383 7.2E-145 T 14-09-2016 ccrud_RS05400 a771bd919b90cde8bb791a4bcb73d10b 409 ProSitePatterns PS00808 ADP-glucose pyrophosphorylase signature 1. 17 36 - T 14-09-2016 IPR005836 ADP-glucose pyrophosphorylase, conserved site GO:0005978|GO:0008878 KEGG: 00500+2.7.7.27|KEGG: 00520+2.7.7.27|MetaCyc: PWY-622|UniPathway: UPA00164 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 PANTHER PTHR30346:SF8 8 295 3.6E-75 T 14-09-2016 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 9.9E-17 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 PANTHER PTHR30346 8 295 3.6E-75 T 14-09-2016 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 Pfam PF03466 LysR substrate binding domain 96 296 9.9E-44 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 8.3E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 8.3E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 8.3E-5 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 SUPERFAMILY SSF53850 95 297 6.11E-40 T 14-09-2016 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 Gene3D G3DSA:3.40.190.10 96 182 1.8E-20 T 14-09-2016 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 SUPERFAMILY SSF46785 5 117 2.45E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 Gene3D G3DSA:3.40.190.10 183 268 1.1E-24 T 14-09-2016 ccrud_RS13340 946485f627efda909a9067f9c521b1b3 305 Gene3D G3DSA:1.10.10.10 8 92 2.3E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Pfam PF00550 Phosphopantetheine attachment site 509 571 1.1E-8 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Pfam PF00501 AMP-binding enzyme 27 399 1.1E-66 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 SUPERFAMILY SSF47336 503 571 4.32E-11 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 46 424 8.3E-100 T 14-09-2016 IPR010071 Amino acid adenylation domain ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Gene3D G3DSA:2.160.10.10 923 1058 2.8E-10 T 14-09-2016 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Gene3D G3DSA:2.160.10.10 674 821 3.0E-19 T 14-09-2016 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Gene3D G3DSA:2.30.38.10 317 388 8.3E-14 T 14-09-2016 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 SUPERFAMILY SSF51161 708 821 2.77E-21 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 PANTHER PTHR24095 21 483 3.7E-118 T 14-09-2016 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 765 800 1.2E-5 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 SUPERFAMILY SSF51161 881 1056 1.8E-15 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Gene3D G3DSA:2.160.10.10 1192 1291 2.0E-19 T 14-09-2016 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Pfam PF13193 AMP-binding enzyme C-terminal domain 408 483 2.5E-5 T 14-09-2016 IPR025110 AMP-binding enzyme C-terminal domain ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Gene3D G3DSA:3.30.300.30 394 492 1.8E-24 T 14-09-2016 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Gene3D G3DSA:1.10.1200.10 501 573 6.4E-16 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Gene3D G3DSA:3.40.50.980 188 316 2.2E-32 T 14-09-2016 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 ProSitePatterns PS00455 Putative AMP-binding domain signature. 149 160 - T 14-09-2016 IPR020845 AMP-binding, conserved site ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 TIGRFAM TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function 603 1290 9.6E-274 T 14-09-2016 IPR012728 Non-ribosomal peptide synthetase, C-terminal ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 Gene3D G3DSA:3.40.50.980 19 172 3.4E-34 T 14-09-2016 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 SUPERFAMILY SSF56801 17 519 6.67E-111 T 14-09-2016 ccrud_RS12230 6889a05a06a110afdf7196aaed3881f8 1294 SUPERFAMILY SSF51161 1192 1291 2.91E-16 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 Pfam PF02540 NAD synthase 210 246 2.3E-5 T 14-09-2016 IPR022310 NAD/GMP synthase ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 1.7E-8 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 1.7E-8 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PRINTS PR00096 Glutamine amidotransferase superfamily signature 168 181 1.7E-8 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 SUPERFAMILY SSF52317 9 200 3.4E-53 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PRINTS PR00097 Anthranilate synthase component II signature 168 181 1.7E-6 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PRINTS PR00097 Anthranilate synthase component II signature 81 92 1.7E-6 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PRINTS PR00097 Anthranilate synthase component II signature 54 63 1.7E-6 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 203 523 3.8E-139 T 14-09-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 523 52.581 T 14-09-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 Pfam PF00958 GMP synthase C terminal domain 431 522 1.6E-37 T 14-09-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 51 65 3.9E-5 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 10 24 3.9E-5 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 81 97 3.9E-5 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PANTHER PTHR11922:SF2 1 520 7.4E-257 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 Gene3D G3DSA:3.40.50.620 199 395 4.2E-52 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 Gene3D G3DSA:3.30.300.10 398 523 3.6E-49 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 Gene3D G3DSA:3.40.50.880 9 195 8.9E-60 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 194 2.6E-71 T 14-09-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 SUPERFAMILY SSF52402 184 443 8.15E-52 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 SUPERFAMILY SSF54810 402 523 1.06E-46 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 PANTHER PTHR11922 1 520 7.4E-257 T 14-09-2016 ccrud_RS03085 849966a372d5cfa28d8f77149f7fde33 523 Pfam PF00117 Glutamine amidotransferase class-I 12 191 1.5E-40 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 ccrud_RS01125 7d57453d13d66395febe0152f8108073 156 PANTHER PTHR22960 1 156 1.1E-87 T 14-09-2016 ccrud_RS01125 7d57453d13d66395febe0152f8108073 156 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 150 5.9E-61 T 14-09-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 ccrud_RS01125 7d57453d13d66395febe0152f8108073 156 Pfam PF01967 MoaC family 15 148 3.6E-53 T 14-09-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 ccrud_RS01125 7d57453d13d66395febe0152f8108073 156 Gene3D G3DSA:3.30.70.640 3 155 3.8E-64 T 14-09-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 ccrud_RS01125 7d57453d13d66395febe0152f8108073 156 SUPERFAMILY SSF55040 11 153 2.48E-57 T 14-09-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 ccrud_RS01125 7d57453d13d66395febe0152f8108073 156 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 2 156 35.914 T 14-09-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 ccrud_RS08505 f0e4a7ee5097c5bdc8a6ceb865bf23a5 383 PANTHER PTHR30238 2 338 5.9E-129 T 14-09-2016 ccrud_RS08505 f0e4a7ee5097c5bdc8a6ceb865bf23a5 383 PANTHER PTHR30238:SF0 2 338 5.9E-129 T 14-09-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 ccrud_RS08505 f0e4a7ee5097c5bdc8a6ceb865bf23a5 383 Pfam PF03741 Integral membrane protein TerC family 74 280 5.5E-51 T 14-09-2016 IPR005496 Integral membrane protein TerC GO:0016021 ccrud_RS08505 f0e4a7ee5097c5bdc8a6ceb865bf23a5 383 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 4 326 2.8E-106 T 14-09-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 ccrud_RS09195 e14a97a0385623caff34f012896d68b0 366 Gene3D G3DSA:3.90.1150.10 268 363 1.3E-14 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS09195 e14a97a0385623caff34f012896d68b0 366 Pfam PF00155 Aminotransferase class I and II 30 352 7.2E-54 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ccrud_RS09195 e14a97a0385623caff34f012896d68b0 366 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 14 361 5.4E-97 T 14-09-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 ccrud_RS09195 e14a97a0385623caff34f012896d68b0 366 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 10 362 52.071 T 14-09-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 ccrud_RS09195 e14a97a0385623caff34f012896d68b0 366 PANTHER PTHR11751:SF398 10 363 2.9E-95 T 14-09-2016 ccrud_RS09195 e14a97a0385623caff34f012896d68b0 366 PANTHER PTHR11751 10 363 2.9E-95 T 14-09-2016 ccrud_RS09195 e14a97a0385623caff34f012896d68b0 366 SUPERFAMILY SSF53383 30 359 2.04E-71 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS09195 e14a97a0385623caff34f012896d68b0 366 Gene3D G3DSA:3.40.640.10 49 267 1.3E-62 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS00570 102e48a80c3ac08c1abef1e1b215daa4 549 PANTHER PTHR30282:SF0 276 548 5.1E-160 T 14-09-2016 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 ccrud_RS00570 102e48a80c3ac08c1abef1e1b215daa4 549 PANTHER PTHR30282:SF0 14 256 5.1E-160 T 14-09-2016 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 ccrud_RS00570 102e48a80c3ac08c1abef1e1b215daa4 549 PANTHER PTHR30282 276 548 5.1E-160 T 14-09-2016 ccrud_RS00570 102e48a80c3ac08c1abef1e1b215daa4 549 PANTHER PTHR30282 14 256 5.1E-160 T 14-09-2016 ccrud_RS00570 102e48a80c3ac08c1abef1e1b215daa4 549 Pfam PF03806 AbgT putative transporter family 28 546 7.5E-144 T 14-09-2016 IPR004697 p-aminobenzoyl-glutamate transport protein AbgT GO:0015558|GO:1902604 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 PANTHER PTHR10992 112 207 1.6E-65 T 14-09-2016 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 PANTHER PTHR10992 301 409 1.6E-65 T 14-09-2016 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 SUPERFAMILY SSF53474 262 403 4.02E-29 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 SUPERFAMILY SSF53474 34 166 4.02E-29 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 PANTHER PTHR10992:SF749 6 95 1.6E-65 T 14-09-2016 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 PANTHER PTHR10992:SF749 112 207 1.6E-65 T 14-09-2016 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 PANTHER PTHR10992:SF749 301 409 1.6E-65 T 14-09-2016 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 Pfam PF00561 alpha/beta hydrolase fold 46 169 5.9E-18 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 136 150 2.8E-9 T 14-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 80 91 2.8E-9 T 14-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 47 55 2.8E-9 T 14-09-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 Gene3D G3DSA:3.40.50.1820 293 403 4.0E-47 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 Gene3D G3DSA:3.40.50.1820 11 239 4.0E-47 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS03015 d7161657ca87dc7c2194956fc54ef451 413 PANTHER PTHR10992 6 95 1.6E-65 T 14-09-2016 ccrud_RS08095 7cf9db13d016a2928e89aec50e2905a7 187 SUPERFAMILY SSF110087 53 161 7.06E-28 T 14-09-2016 IPR007410 DR1885-like metal-binding protein ccrud_RS08095 7cf9db13d016a2928e89aec50e2905a7 187 Pfam PF04314 Protein of unknown function (DUF461) 56 159 5.1E-29 T 14-09-2016 IPR007410 DR1885-like metal-binding protein ccrud_RS08095 7cf9db13d016a2928e89aec50e2905a7 187 PANTHER PTHR36302:SF1 17 186 1.2E-19 T 14-09-2016 ccrud_RS08095 7cf9db13d016a2928e89aec50e2905a7 187 PANTHER PTHR36302 17 186 1.2E-19 T 14-09-2016 ccrud_RS07955 53cb53ff837dce0a0f99794a02992cd2 371 PANTHER PTHR30137 1 342 1.1E-116 T 14-09-2016 ccrud_RS07955 53cb53ff837dce0a0f99794a02992cd2 371 Gene3D G3DSA:3.20.20.30 1 339 3.9E-77 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS07955 53cb53ff837dce0a0f99794a02992cd2 371 SUPERFAMILY SSF51679 1 334 1.31E-69 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS07955 53cb53ff837dce0a0f99794a02992cd2 371 TIGRFAM TIGR04036 LLM_CE1758_fam: putative luciferase-like monooxygenase, FMN-dependent, CE1758 family 1 354 4.5E-207 T 14-09-2016 IPR023934 Luciferase-like monooxygenase, FMN-dependent, putative ccrud_RS07955 53cb53ff837dce0a0f99794a02992cd2 371 Pfam PF00296 Luciferase-like monooxygenase 1 297 1.7E-53 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS07955 53cb53ff837dce0a0f99794a02992cd2 371 PANTHER PTHR30137:SF8 1 342 1.1E-116 T 14-09-2016 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 Gene3D G3DSA:3.30.1360.40 91 163 1.1E-27 T 14-09-2016 IPR024946 Arginine repressor C-terminal-like domain ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 ProDom PD007402 ARGININE REPRESSOR TRANSCRIPTION BIOSYNTHESIS DNA-BINDING REGULATION AMINO-ACID ARGR TRANSCRIPTIONAL FAMILY 106 163 9.0E-26 T 14-09-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 PANTHER PTHR34471:SF1 10 163 3.5E-45 T 14-09-2016 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 Pfam PF02863 Arginine repressor, C-terminal domain 99 161 1.6E-23 T 14-09-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 Hamap MF_00173 Arginine repressor [argR]. 1 168 55.347 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 SUPERFAMILY SSF55252 98 163 4.19E-19 T 14-09-2016 IPR020899 Arginine repressor, C-terminal GO:0034618|GO:0051259 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 SUPERFAMILY SSF46785 13 76 2.28E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 Pfam PF01316 Arginine repressor, DNA binding domain 13 80 9.4E-26 T 14-09-2016 IPR020900 Arginine repressor, DNA-binding domain GO:0003700|GO:0006355|GO:0006525 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 TIGRFAM TIGR01529 argR_whole: arginine repressor 17 161 3.8E-40 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 PRINTS PR01467 Bacterial arginine repressor signature 106 119 4.3E-25 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 PRINTS PR01467 Bacterial arginine repressor signature 33 46 4.3E-25 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 PRINTS PR01467 Bacterial arginine repressor signature 136 151 4.3E-25 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 PRINTS PR01467 Bacterial arginine repressor signature 49 64 4.3E-25 T 14-09-2016 IPR001669 Arginine repressor GO:0003700|GO:0006355 UniPathway: UPA00068 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 PANTHER PTHR34471 10 163 3.5E-45 T 14-09-2016 ccrud_RS06710 db2dff77781c7db53967d0bed4f855a9 168 Gene3D G3DSA:1.10.10.10 21 76 2.5E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 SMART SM00478 39 188 3.6E-46 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 Pfam PF00633 Helix-hairpin-helix motif 100 128 2.2E-9 T 14-09-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 SUPERFAMILY SSF48150 3 214 4.71E-68 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 PANTHER PTHR10359 3 208 6.4E-68 T 14-09-2016 ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 Pfam PF10576 Iron-sulfur binding domain of endonuclease III 190 206 1.9E-4 T 14-09-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 36 148 1.1E-17 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 190 206 - T 14-09-2016 IPR004035 Endonuclease III, iron-sulphur binding site ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 SMART SM00525 189 209 1.2E-4 T 14-09-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 Gene3D G3DSA:1.10.1670.10 123 218 2.2E-33 T 14-09-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal ccrud_RS12035 6f62152aac96ffc8ebba4ade685dd4f7 293 Gene3D G3DSA:1.10.340.30 26 122 7.3E-39 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 Pfam PF10397 Adenylosuccinate lyase C-terminus 333 407 6.5E-12 T 14-09-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PANTHER PTHR11444 1 410 1.0E-119 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 Pfam PF00206 Lyase 23 265 8.1E-44 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 SMART SM00998 332 410 1.5E-9 T 14-09-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PRINTS PR00145 Argininosuccinate lyase family signature 199 223 1.1E-11 T 14-09-2016 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PRINTS PR00145 Argininosuccinate lyase family signature 68 90 1.1E-11 T 14-09-2016 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PRINTS PR00145 Argininosuccinate lyase family signature 244 260 1.1E-11 T 14-09-2016 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PRINTS PR00145 Argininosuccinate lyase family signature 109 129 1.1E-11 T 14-09-2016 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 Gene3D G3DSA:1.10.275.10 1 71 6.7E-15 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 Gene3D G3DSA:1.20.200.10 72 339 5.4E-72 T 14-09-2016 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 SUPERFAMILY SSF48557 2 415 1.88E-92 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PANTHER PTHR11444:SF21 1 410 1.0E-119 T 14-09-2016 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 Gene3D G3DSA:1.10.40.30 340 409 3.3E-19 T 14-09-2016 ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PRINTS PR00149 Fumarate lyase superfamily signature 114 132 1.9E-19 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PRINTS PR00149 Fumarate lyase superfamily signature 199 226 1.9E-19 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PRINTS PR00149 Fumarate lyase superfamily signature 244 260 1.9E-19 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS08915 65da885e4ef9079801539bcc45e6fc0d 417 PRINTS PR00149 Fumarate lyase superfamily signature 69 87 1.9E-19 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS08270 e0aaa94ee6725cdf08183ce098a3854b 144 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 143 5.1E-46 T 14-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 ccrud_RS08270 e0aaa94ee6725cdf08183ce098a3854b 144 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 144 27.032 T 14-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 ccrud_RS08270 e0aaa94ee6725cdf08183ce098a3854b 144 SUPERFAMILY SSF69500 2 143 1.57E-40 T 14-09-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain ccrud_RS08270 e0aaa94ee6725cdf08183ce098a3854b 144 PANTHER PTHR10472 2 143 2.8E-44 T 14-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 ccrud_RS08270 e0aaa94ee6725cdf08183ce098a3854b 144 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 2 143 1.5E-33 T 14-09-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 ccrud_RS08270 e0aaa94ee6725cdf08183ce098a3854b 144 Gene3D G3DSA:3.50.80.10 2 143 1.2E-49 T 14-09-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 12 182 3.6E-37 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Pfam PF14492 Elongation Factor G, domain II 407 480 1.9E-33 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 SUPERFAMILY SSF50447 267 407 1.26E-33 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PANTHER PTHR23115:SF66 1 179 0.0 T 14-09-2016 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PANTHER PTHR23115:SF66 306 704 0.0 T 14-09-2016 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PANTHER PTHR23115:SF66 257 285 0.0 T 14-09-2016 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Gene3D G3DSA:3.30.70.240 610 702 1.3E-32 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 SMART SM00889 483 611 4.2E-66 T 14-09-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 SUPERFAMILY SSF54211 482 612 5.82E-38 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 SMART SM00838 613 700 1.1E-55 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Pfam PF03144 Elongation factor Tu domain 2 327 394 8.6E-16 T 14-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Pfam PF03764 Elongation factor G, domain IV 482 611 9.8E-44 T 14-09-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PRINTS PR00315 GTP-binding elongation factor signature 96 107 2.0E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PRINTS PR00315 GTP-binding elongation factor signature 60 68 2.0E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PRINTS PR00315 GTP-binding elongation factor signature 80 90 2.0E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PRINTS PR00315 GTP-binding elongation factor signature 132 141 2.0E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.0E-16 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 SUPERFAMILY SSF54980 405 483 5.4E-25 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Hamap MF_00054_B Elongation factor G [fusA]. 8 704 106.857 T 14-09-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Gene3D G3DSA:3.30.70.870 408 483 1.7E-36 T 14-09-2016 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Pfam PF00009 Elongation factor Tu GTP binding domain 11 284 3.8E-67 T 14-09-2016 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 SUPERFAMILY SSF54980 616 702 8.63E-29 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Gene3D G3DSA:3.40.50.300 7 288 2.5E-103 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Gene3D G3DSA:3.30.230.10 487 609 2.0E-44 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 SUPERFAMILY SSF52540 8 284 5.31E-108 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PANTHER PTHR23115 1 179 0.0 T 14-09-2016 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PANTHER PTHR23115 306 704 0.0 T 14-09-2016 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 PANTHER PTHR23115 257 285 0.0 T 14-09-2016 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Pfam PF00679 Elongation factor G C-terminus 613 698 3.9E-29 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 TIGRFAM TIGR00484 EF-G: translation elongation factor G 8 705 0.0 T 14-09-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site ccrud_RS02585 df9e4f48cf0ca03614a75831f6053536 709 Gene3D G3DSA:2.40.30.10 309 407 1.2E-35 T 14-09-2016 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 SMART SM00382 70 241 1.5E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 Gene3D G3DSA:3.30.250.10 281 339 6.7E-25 T 14-09-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 17 335 9.7E-169 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 SUPERFAMILY SSF52540 16 280 8.5E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 ProSitePatterns PS00321 recA signature. 226 234 - T 14-09-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 PANTHER PTHR22942 16 348 5.1E-192 T 14-09-2016 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 PRINTS PR00142 RecA protein signature 140 169 2.7E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 PRINTS PR00142 RecA protein signature 178 207 2.7E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 PRINTS PR00142 RecA protein signature 256 285 2.7E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 PRINTS PR00142 RecA protein signature 106 135 2.7E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 PRINTS PR00142 RecA protein signature 310 327 2.7E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 PRINTS PR00142 RecA protein signature 223 251 2.7E-83 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 PANTHER PTHR22942:SF1 16 348 5.1E-192 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 Gene3D G3DSA:3.40.50.300 39 280 1.9E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 SUPERFAMILY SSF54752 281 339 2.22E-18 T 14-09-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 Hamap MF_00268 Protein RecA [recA]. 18 342 51.798 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08455 3910e5cdff188ac3bcda8967c2ddf3d9 370 Pfam PF00154 recA bacterial DNA recombination protein 20 281 1.2E-143 T 14-09-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 ccrud_RS08790 f2d139c993ae107e2dc30669b97b1251 274 SMART SM00382 47 229 1.8E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08790 f2d139c993ae107e2dc30669b97b1251 274 SUPERFAMILY SSF52540 15 243 2.13E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08790 f2d139c993ae107e2dc30669b97b1251 274 Gene3D G3DSA:3.40.50.300 14 243 1.3E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08790 f2d139c993ae107e2dc30669b97b1251 274 PANTHER PTHR24220 24 254 3.5E-78 T 14-09-2016 ccrud_RS08790 f2d139c993ae107e2dc30669b97b1251 274 PANTHER PTHR24220:SF593 24 254 3.5E-78 T 14-09-2016 ccrud_RS08790 f2d139c993ae107e2dc30669b97b1251 274 Pfam PF00005 ABC transporter 39 181 3.2E-21 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 SUPERFAMILY SSF48317 189 315 2.09E-23 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 PANTHER PTHR35037:SF3 452 567 1.9E-12 T 14-09-2016 ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 SMART SM00014 183 310 3.1E-10 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 Pfam PF12951 Passenger-associated-transport-repeat 458 486 4.3E-12 T 14-09-2016 IPR013425 Autotransporter-associated beta strand repeat ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 Gene3D G3DSA:2.160.20.20 420 576 3.3E-10 T 14-09-2016 IPR012332 P22 tailspike C-terminal domain-like ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 TIGRFAM TIGR02601 autotrns_rpt: autotransporter-associated beta strand repeat 457 487 2.3E-13 T 14-09-2016 IPR013425 Autotransporter-associated beta strand repeat ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 Pfam PF01569 PAP2 superfamily 192 310 3.2E-15 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 Gene3D G3DSA:1.20.144.10 174 330 1.7E-42 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 Gene3D G3DSA:1.20.144.10 78 141 1.7E-42 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS05755 61f2f52b458e64055f5827ef3a2f17e2 623 PANTHER PTHR35037 452 567 1.9E-12 T 14-09-2016 ccrud_RS03895 289dc54b6616874c16a7e2e75689c6f3 300 PIRSF PIRSF003097 1 300 1.1E-53 T 14-09-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 ccrud_RS03895 289dc54b6616874c16a7e2e75689c6f3 300 PANTHER PTHR30489 132 299 3.5E-15 T 14-09-2016 ccrud_RS03895 289dc54b6616874c16a7e2e75689c6f3 300 Pfam PF02687 FtsX-like permease family 178 296 3.0E-10 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 PANTHER PTHR11699:SF15 521 934 2.6E-86 T 14-09-2016 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 SUPERFAMILY SSF53720 516 934 4.19E-95 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 Gene3D G3DSA:3.40.309.10 730 920 2.5E-40 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 742 753 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 Gene3D G3DSA:3.40.605.10 520 729 1.1E-45 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 Pfam PF01619 Proline dehydrogenase 130 422 5.2E-63 T 14-09-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 PIRSF PIRSF000197 1 1143 0.0 T 14-09-2016 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 SUPERFAMILY SSF51730 129 448 4.71E-77 T 14-09-2016 IPR029041 FAD-linked oxidoreductase-like ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 Gene3D G3DSA:3.20.20.220 128 449 5.7E-74 T 14-09-2016 IPR029041 FAD-linked oxidoreductase-like ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 PANTHER PTHR11699 521 934 2.6E-86 T 14-09-2016 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 714 721 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS00560 6ba3eac319e92257bd2041f745632bcf 1149 Pfam PF00171 Aldehyde dehydrogenase family 520 934 3.1E-98 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS00175 e88d5060415d09c0039aad107e2f8441 154 PANTHER PTHR21712 57 153 9.8E-18 T 14-09-2016 ccrud_RS00175 e88d5060415d09c0039aad107e2f8441 154 SUPERFAMILY SSF49879 41 152 4.78E-26 T 14-09-2016 IPR008984 SMAD/FHA domain GO:0005515 ccrud_RS00175 e88d5060415d09c0039aad107e2f8441 154 Pfam PF00498 FHA domain 82 146 7.1E-16 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ccrud_RS00175 e88d5060415d09c0039aad107e2f8441 154 SMART SM00240 81 131 2.5E-9 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ccrud_RS00175 e88d5060415d09c0039aad107e2f8441 154 Gene3D G3DSA:2.60.200.20 56 153 8.5E-23 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ccrud_RS00175 e88d5060415d09c0039aad107e2f8441 154 PANTHER PTHR21712:SF36 57 153 9.8E-18 T 14-09-2016 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 SUPERFAMILY SSF53613 5 260 2.84E-52 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 PANTHER PTHR20857 3 268 1.1E-60 T 14-09-2016 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 PANTHER PTHR20857:SF19 3 268 1.1E-60 T 14-09-2016 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 11 260 28.971 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 Pfam PF02110 Hydroxyethylthiazole kinase family 10 255 1.5E-67 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 61 69 5.8E-30 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 161 178 5.8E-30 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 117 131 5.8E-30 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 17 24 5.8E-30 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 87 104 5.8E-30 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 30 51 5.8E-30 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 PIRSF PIRSF000513 3 267 9.4E-77 T 14-09-2016 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07100 fe4d57c7fe3d8fb1ba413e0ea0692ab0 268 Gene3D G3DSA:3.40.1190.20 4 261 1.9E-75 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS06075 5cbc0dd7d1c187b74e01cdef8bfea050 290 PANTHER PTHR30579:SF2 1 289 1.2E-82 T 14-09-2016 ccrud_RS06075 5cbc0dd7d1c187b74e01cdef8bfea050 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 2.1E-13 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS06075 5cbc0dd7d1c187b74e01cdef8bfea050 290 SUPERFAMILY SSF53850 80 284 1.72E-16 T 14-09-2016 ccrud_RS06075 5cbc0dd7d1c187b74e01cdef8bfea050 290 Gene3D G3DSA:3.40.190.10 89 191 5.6E-31 T 14-09-2016 ccrud_RS06075 5cbc0dd7d1c187b74e01cdef8bfea050 290 SUPERFAMILY SSF46785 1 107 1.31E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06075 5cbc0dd7d1c187b74e01cdef8bfea050 290 Pfam PF03466 LysR substrate binding domain 90 283 1.6E-10 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS06075 5cbc0dd7d1c187b74e01cdef8bfea050 290 Gene3D G3DSA:1.10.10.10 1 78 1.3E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06075 5cbc0dd7d1c187b74e01cdef8bfea050 290 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 3 286 2.3E-97 T 14-09-2016 IPR017685 HTH-type transcriptional regulator ArgP ccrud_RS06075 5cbc0dd7d1c187b74e01cdef8bfea050 290 PANTHER PTHR30579 1 289 1.2E-82 T 14-09-2016 ccrud_RS01540 973fd03b86fd9569d080cf99ce3b779e 280 PANTHER PTHR10000:SF10 23 249 1.5E-47 T 14-09-2016 ccrud_RS01540 973fd03b86fd9569d080cf99ce3b779e 280 Pfam PF12710 haloacid dehalogenase-like hydrolase 23 208 9.5E-28 T 14-09-2016 ccrud_RS01540 973fd03b86fd9569d080cf99ce3b779e 280 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 22 210 2.2E-24 T 14-09-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 ccrud_RS01540 973fd03b86fd9569d080cf99ce3b779e 280 SUPERFAMILY SSF56784 19 231 5.13E-31 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS01540 973fd03b86fd9569d080cf99ce3b779e 280 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 22 221 2.9E-57 T 14-09-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial ccrud_RS01540 973fd03b86fd9569d080cf99ce3b779e 280 Gene3D G3DSA:3.40.50.1000 94 243 4.8E-48 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS01540 973fd03b86fd9569d080cf99ce3b779e 280 PANTHER PTHR10000 23 249 1.5E-47 T 14-09-2016 ccrud_RS07665 c83a6242ccadccb9cf4ab1f790fb4765 259 Pfam PF00121 Triosephosphate isomerase 6 251 1.0E-87 T 14-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 ccrud_RS07665 c83a6242ccadccb9cf4ab1f790fb4765 259 Gene3D G3DSA:3.20.20.70 3 256 2.8E-104 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS07665 c83a6242ccadccb9cf4ab1f790fb4765 259 PANTHER PTHR21139 1 250 2.7E-114 T 14-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 ccrud_RS07665 c83a6242ccadccb9cf4ab1f790fb4765 259 ProSitePatterns PS00171 Triosephosphate isomerase active site. 170 180 - T 14-09-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 ccrud_RS07665 c83a6242ccadccb9cf4ab1f790fb4765 259 SUPERFAMILY SSF51351 1 253 4.32E-90 T 14-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 ccrud_RS07665 c83a6242ccadccb9cf4ab1f790fb4765 259 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 3 255 39.773 T 14-09-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 ccrud_RS07665 c83a6242ccadccb9cf4ab1f790fb4765 259 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 6 244 1.6E-60 T 14-09-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 PANTHER PTHR10804 9 261 2.7E-101 T 14-09-2016 ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 SUPERFAMILY SSF55920 10 262 9.55E-74 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 Gene3D G3DSA:3.90.230.10 11 262 2.9E-76 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 Hamap MF_01974 Methionine aminopeptidase [map]. 10 263 35.774 T 14-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 Pfam PF00557 Metallopeptidase family M24 20 253 4.8E-41 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 12 262 9.7E-77 T 14-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 75 88 1.6E-19 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 205 217 1.6E-19 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 98 114 1.6E-19 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 PRINTS PR00599 Methionine aminopeptidase-1 signature 174 186 1.6E-19 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase ccrud_RS02840 b69affc76ae55189fb13d3d06fb0893c 264 PANTHER PTHR10804:SF41 9 261 2.7E-101 T 14-09-2016 ccrud_RS00970 e744e2b15b08756e3d2fba9abd54357d 144 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 12 124 6.8E-18 T 14-09-2016 IPR000014 PAS domain ccrud_RS00970 e744e2b15b08756e3d2fba9abd54357d 144 SMART SM00091 6 72 0.0021 T 14-09-2016 IPR000014 PAS domain ccrud_RS00970 e744e2b15b08756e3d2fba9abd54357d 144 SUPERFAMILY SSF55785 17 132 2.99E-23 T 14-09-2016 IPR000014 PAS domain ccrud_RS00970 e744e2b15b08756e3d2fba9abd54357d 144 Pfam PF08448 PAS fold 16 123 1.4E-13 T 14-09-2016 IPR013656 PAS fold-4 ccrud_RS00970 e744e2b15b08756e3d2fba9abd54357d 144 Gene3D G3DSA:3.30.450.20 10 122 1.3E-20 T 14-09-2016 ccrud_RS03270 98df1bdf3f113620814757ebb7830bf9 469 SMART SM00244 30 195 0.0062 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS03270 98df1bdf3f113620814757ebb7830bf9 469 Pfam PF01145 SPFH domain / Band 7 family 38 212 5.9E-17 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS03270 98df1bdf3f113620814757ebb7830bf9 469 SUPERFAMILY SSF117892 62 197 3.53E-25 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS03270 98df1bdf3f113620814757ebb7830bf9 469 Pfam PF15975 Flotillin 314 396 1.2E-9 T 14-09-2016 IPR031905 Flotillin, C-terminal domain ccrud_RS03270 98df1bdf3f113620814757ebb7830bf9 469 PANTHER PTHR13806 1 427 1.3E-42 T 14-09-2016 IPR027705 Flotillin family ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 PANTHER PTHR30204:SF5 6 161 5.0E-30 T 14-09-2016 ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 6 17 4.4E-5 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 41 61 4.4E-5 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 17 30 4.4E-5 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 Pfam PF07739 TipAS antibiotic-recognition domain 127 231 9.1E-26 T 14-09-2016 IPR012925 TipAS antibiotic-recognition domain ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 PANTHER PTHR30204 6 161 5.0E-30 T 14-09-2016 ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 Gene3D G3DSA:1.10.490.50 157 240 1.3E-18 T 14-09-2016 IPR012925 TipAS antibiotic-recognition domain ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 SUPERFAMILY SSF89082 156 242 2.75E-19 T 14-09-2016 IPR012925 TipAS antibiotic-recognition domain ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 Gene3D G3DSA:1.10.1660.10 6 109 6.6E-30 T 14-09-2016 ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 SMART SM00422 6 74 1.6E-20 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 Pfam PF13411 MerR HTH family regulatory protein 6 72 2.6E-16 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS11750 5ada93b096f41c90b76080fae00f3bfe 252 SUPERFAMILY SSF46955 6 107 2.93E-27 T 14-09-2016 IPR009061 Putative DNA-binding domain ccrud_RS05305 4334047e75646b7b946e3bf6e44ff4d7 501 PANTHER PTHR30290:SF14 2 428 9.2E-20 T 14-09-2016 ccrud_RS05305 4334047e75646b7b946e3bf6e44ff4d7 501 Gene3D G3DSA:3.40.190.10 206 311 2.6E-10 T 14-09-2016 ccrud_RS05305 4334047e75646b7b946e3bf6e44ff4d7 501 SUPERFAMILY SSF53850 55 496 1.81E-37 T 14-09-2016 ccrud_RS05305 4334047e75646b7b946e3bf6e44ff4d7 501 PANTHER PTHR30290 2 428 9.2E-20 T 14-09-2016 ccrud_RS05305 4334047e75646b7b946e3bf6e44ff4d7 501 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 110 306 6.5E-19 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain ccrud_RS05305 4334047e75646b7b946e3bf6e44ff4d7 501 Gene3D G3DSA:3.90.76.10 87 199 1.5E-12 T 14-09-2016 ccrud_RS10605 d29faa9baf3bf38914021ef68cb15981 375 Gene3D G3DSA:2.102.10.10 20 134 1.0E-31 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS10605 d29faa9baf3bf38914021ef68cb15981 375 Pfam PF00355 Rieske [2Fe-2S] domain 22 105 1.9E-18 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS10605 d29faa9baf3bf38914021ef68cb15981 375 PANTHER PTHR21266 20 360 4.3E-124 T 14-09-2016 ccrud_RS10605 d29faa9baf3bf38914021ef68cb15981 375 PANTHER PTHR21266:SF19 20 360 4.3E-124 T 14-09-2016 ccrud_RS10605 d29faa9baf3bf38914021ef68cb15981 375 SUPERFAMILY SSF55961 134 358 7.42E-46 T 14-09-2016 ccrud_RS10605 d29faa9baf3bf38914021ef68cb15981 375 SUPERFAMILY SSF50022 19 129 2.75E-32 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 Gene3D G3DSA:3.90.180.10 39 151 4.7E-7 T 14-09-2016 IPR011032 GroES-like ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 Gene3D G3DSA:3.40.50.720 152 305 1.4E-71 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 42 100 8.1E-5 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 PANTHER PTHR11695 29 339 3.1E-115 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 TIGRFAM TIGR02823 oxido_YhdH: putative quinone oxidoreductase, YhdH/YhfP family 16 339 6.8E-120 T 14-09-2016 IPR014188 Acrylyl-CoA reductase AcuI ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 SMART SM00829 31 337 6.3E-5 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 SUPERFAMILY SSF50129 36 158 6.34E-33 T 14-09-2016 IPR011032 GroES-like ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 Pfam PF00107 Zinc-binding dehydrogenase 172 291 6.8E-14 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 SUPERFAMILY SSF51735 130 302 2.22E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11395 a744906bb71666e1f9b87c5f6f038a21 340 PANTHER PTHR11695:SF13 29 339 3.1E-115 T 14-09-2016 IPR014188 Acrylyl-CoA reductase AcuI ccrud_RS05805 1bc804d27ec9ae7de567536c11a04004 216 Pfam PF01300 Telomere recombination 23 197 5.0E-50 T 14-09-2016 IPR006070 YrdC-like domain GO:0003725 ccrud_RS05805 1bc804d27ec9ae7de567536c11a04004 216 PANTHER PTHR17490 17 209 8.2E-68 T 14-09-2016 ccrud_RS05805 1bc804d27ec9ae7de567536c11a04004 216 Gene3D G3DSA:3.90.870.10 4 209 1.4E-67 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain ccrud_RS05805 1bc804d27ec9ae7de567536c11a04004 216 SUPERFAMILY SSF55821 4 207 3.66E-60 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain ccrud_RS05805 1bc804d27ec9ae7de567536c11a04004 216 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 11 208 4.2E-62 T 14-09-2016 IPR006070 YrdC-like domain GO:0003725 ccrud_RS08365 63c122f438652d3f47934b4b6929e224 89 Gene3D G3DSA:3.30.1340.10 1 87 2.4E-20 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like ccrud_RS08365 63c122f438652d3f47934b4b6929e224 89 Pfam PF00381 PTS HPr component phosphorylation site 3 83 4.0E-21 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like ccrud_RS08365 63c122f438652d3f47934b4b6929e224 89 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 82 1.6E-27 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like ccrud_RS08365 63c122f438652d3f47934b4b6929e224 89 SUPERFAMILY SSF55594 1 87 6.02E-18 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like ccrud_RS08365 63c122f438652d3f47934b4b6929e224 89 PRINTS PR00107 Phosphocarrier protein signature 13 29 1.6E-10 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like ccrud_RS08365 63c122f438652d3f47934b4b6929e224 89 PRINTS PR00107 Phosphocarrier protein signature 42 57 1.6E-10 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like ccrud_RS08365 63c122f438652d3f47934b4b6929e224 89 PRINTS PR00107 Phosphocarrier protein signature 57 74 1.6E-10 T 14-09-2016 IPR000032 Phosphocarrier HPr protein-like ccrud_RS08365 63c122f438652d3f47934b4b6929e224 89 PANTHER PTHR33705 1 87 1.3E-16 T 14-09-2016 ccrud_RS08365 63c122f438652d3f47934b4b6929e224 89 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 14-09-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 PANTHER PTHR19211 514 552 9.6E-219 T 14-09-2016 ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 Gene3D G3DSA:3.40.50.300 3 229 1.7E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 Gene3D G3DSA:3.40.50.300 284 503 3.2E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 PANTHER PTHR19211:SF55 514 552 9.6E-219 T 14-09-2016 ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 PANTHER PTHR19211:SF55 1 494 9.6E-219 T 14-09-2016 ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 SUPERFAMILY SSF52540 4 205 2.76E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 PANTHER PTHR19211 1 494 9.6E-219 T 14-09-2016 ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 Pfam PF16326 ABC transporter C-terminal domain 540 600 1.1E-9 T 14-09-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 Pfam PF12848 ABC transporter 193 267 3.0E-5 T 14-09-2016 IPR032781 ABC-transporter extension domain ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 SMART SM00382 29 206 2.0E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 SMART SM00382 311 480 4.1E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 Pfam PF00005 ABC transporter 303 436 7.5E-23 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 Pfam PF00005 ABC transporter 20 154 1.1E-23 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS04510 39657671e943bbf78bf97b1fe1c3aba4 605 SUPERFAMILY SSF52540 271 493 1.17E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08910 63ee4e58fa1241b01e979d9c89c6739d 491 PANTHER PTHR10283 13 491 1.7E-174 T 14-09-2016 ccrud_RS08910 63ee4e58fa1241b01e979d9c89c6739d 491 PANTHER PTHR10283:SF13 13 491 1.7E-174 T 14-09-2016 IPR030676 Citrate carrier CitT-related ccrud_RS08910 63ee4e58fa1241b01e979d9c89c6739d 491 Pfam PF00939 Sodium:sulfate symporter transmembrane region 19 491 6.4E-138 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS08910 63ee4e58fa1241b01e979d9c89c6739d 491 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 37 485 5.5E-113 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS08910 63ee4e58fa1241b01e979d9c89c6739d 491 PIRSF PIRSF002457 3 491 2.5E-135 T 14-09-2016 IPR030676 Citrate carrier CitT-related ccrud_RS07895 16ba141e34a14d946eece9f2d43f91fb 389 Gene3D G3DSA:3.30.160.60 352 375 4.7E-4 T 14-09-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 ccrud_RS07895 16ba141e34a14d946eece9f2d43f91fb 389 PANTHER PTHR30518:SF2 3 377 1.3E-52 T 14-09-2016 ccrud_RS07895 16ba141e34a14d946eece9f2d43f91fb 389 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 25 374 4.9E-41 T 14-09-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like ccrud_RS07895 16ba141e34a14d946eece9f2d43f91fb 389 Pfam PF02618 YceG-like family 61 377 9.1E-60 T 14-09-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like ccrud_RS07895 16ba141e34a14d946eece9f2d43f91fb 389 PANTHER PTHR30518 3 377 1.3E-52 T 14-09-2016 ccrud_RS08675 ec52d04eafb1526743f7cbe41fe95cb7 245 PANTHER PTHR30283:SF3 2 208 2.2E-36 T 14-09-2016 ccrud_RS08675 ec52d04eafb1526743f7cbe41fe95cb7 245 Pfam PF03883 Protein of unknown function (DUF328) 1 210 1.1E-43 T 14-09-2016 IPR005583 Peroxide stress protein YaaA ccrud_RS08675 ec52d04eafb1526743f7cbe41fe95cb7 245 PANTHER PTHR30283 2 208 2.2E-36 T 14-09-2016 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 197 207 - T 14-09-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 PANTHER PTHR21198:SF2 15 281 2.0E-105 T 14-09-2016 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 88 96 - T 14-09-2016 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 Pfam PF01177 Asp/Glu/Hydantoin racemase 24 231 2.1E-36 T 14-09-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 PANTHER PTHR21198 15 281 2.0E-105 T 14-09-2016 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 Gene3D G3DSA:3.40.50.1860 22 190 2.3E-55 T 14-09-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 SUPERFAMILY SSF53681 127 274 1.8E-39 T 14-09-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 Hamap MF_00258 Glutamate racemase [murI]. 22 275 37.12 T 14-09-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 TIGRFAM TIGR00067 glut_race: glutamate racemase 24 271 5.2E-69 T 14-09-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11275 11d51bdc8b24927c7b938db2d1640f41 282 SUPERFAMILY SSF53681 23 125 5.89E-35 T 14-09-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS11510 81c3fa99ec9068135ee535746e4a866f 190 Gene3D G3DSA:1.20.1200.10 17 188 4.2E-55 T 14-09-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 ccrud_RS11510 81c3fa99ec9068135ee535746e4a866f 190 SUPERFAMILY SSF89028 6 185 1.79E-55 T 14-09-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 ccrud_RS11510 81c3fa99ec9068135ee535746e4a866f 190 PANTHER PTHR12213 1 177 1.1E-65 T 14-09-2016 ccrud_RS11510 81c3fa99ec9068135ee535746e4a866f 190 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 180 1.3E-49 T 14-09-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 ccrud_RS11510 81c3fa99ec9068135ee535746e4a866f 190 Pfam PF01923 Cobalamin adenosyltransferase 8 175 7.5E-54 T 14-09-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 ccrud_RS11510 81c3fa99ec9068135ee535746e4a866f 190 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 14 118 3.0E-52 T 14-09-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.4E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.4E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.4E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.1E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.1E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 6.1E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 6.1E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 6.1E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 6.1E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PANTHER PTHR24322:SF530 10 139 1.6E-44 T 14-09-2016 ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 192 0.0014 T 14-09-2016 ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PANTHER PTHR24322 155 186 1.6E-44 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PANTHER PTHR24322 10 139 1.6E-44 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 Gene3D G3DSA:3.40.50.720 2 267 4.9E-74 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 247 2.3E-49 T 14-09-2016 ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 PANTHER PTHR24322:SF530 155 186 1.6E-44 T 14-09-2016 ccrud_RS01475 8d8a39e61feab783622d8cc3dfe5aea8 311 SUPERFAMILY SSF51735 4 251 1.67E-65 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS08940 78b752b49321a94ea2f01b75d3c1305a 171 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 7 168 1.3E-37 T 14-09-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 ccrud_RS08940 78b752b49321a94ea2f01b75d3c1305a 171 SUPERFAMILY SSF50346 99 168 1.57E-15 T 14-09-2016 IPR011033 PRC-barrel-like ccrud_RS08940 78b752b49321a94ea2f01b75d3c1305a 171 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 6 168 21.389 T 14-09-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 ccrud_RS08940 78b752b49321a94ea2f01b75d3c1305a 171 Gene3D G3DSA:2.30.30.240 99 168 2.4E-18 T 14-09-2016 ccrud_RS08940 78b752b49321a94ea2f01b75d3c1305a 171 Pfam PF05239 PRC-barrel domain 96 169 1.5E-10 T 14-09-2016 IPR027275 PRC-barrel domain ccrud_RS08940 78b752b49321a94ea2f01b75d3c1305a 171 PANTHER PTHR33692 3 171 2.7E-44 T 14-09-2016 ccrud_RS08940 78b752b49321a94ea2f01b75d3c1305a 171 Pfam PF01782 RimM N-terminal domain 8 88 7.4E-22 T 14-09-2016 IPR002676 RimM protein GO:0006364 ccrud_RS08940 78b752b49321a94ea2f01b75d3c1305a 171 Gene3D G3DSA:2.40.30.60 3 87 2.5E-20 T 14-09-2016 IPR002676 RimM protein GO:0006364 ccrud_RS08940 78b752b49321a94ea2f01b75d3c1305a 171 SUPERFAMILY SSF50447 7 87 2.47E-16 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 SUPERFAMILY SSF52540 5 251 2.3E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 PANTHER PTHR24220:SF132 7 409 3.6E-147 T 14-09-2016 ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 SMART SM00382 31 229 7.2E-19 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 SMART SM00382 307 499 7.9E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 Gene3D G3DSA:3.40.50.300 4 253 2.4E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 Gene3D G3DSA:3.40.50.300 275 523 1.8E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 ProSitePatterns PS00211 ABC transporters family signature. 422 436 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 Pfam PF00005 ABC transporter 23 179 3.0E-26 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 Pfam PF00005 ABC transporter 299 450 7.7E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 PANTHER PTHR24220 7 409 3.6E-147 T 14-09-2016 ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 231 261 1.9E-6 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 501 531 0.0023 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ccrud_RS12960 5ba754e09ccbc11c6faa440792a9e0a7 537 SUPERFAMILY SSF52540 277 521 1.11E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01900 135d684e24fd764d8eb5edb2d18954d3 298 SUPERFAMILY SSF53098 123 285 1.1E-32 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS01900 135d684e24fd764d8eb5edb2d18954d3 298 Gene3D G3DSA:3.30.420.10 124 284 1.2E-31 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS01900 135d684e24fd764d8eb5edb2d18954d3 298 Pfam PF00665 Integrase core domain 129 244 2.4E-27 T 14-09-2016 IPR001584 Integrase, catalytic core GO:0015074 ccrud_RS01900 135d684e24fd764d8eb5edb2d18954d3 298 Pfam PF13276 HTH-like domain 46 105 2.9E-17 T 14-09-2016 IPR025948 HTH-like domain ccrud_RS01900 135d684e24fd764d8eb5edb2d18954d3 298 PANTHER PTHR32552 2 284 2.9E-45 T 14-09-2016 ccrud_RS03690 fe67151e46f1c100c183293b27b8ee55 221 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 15 113 7.3E-21 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 ccrud_RS03690 fe67151e46f1c100c183293b27b8ee55 221 SUPERFAMILY SSF69754 15 119 6.15E-21 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 ccrud_RS03690 fe67151e46f1c100c183293b27b8ee55 221 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 162 215 6.2E-24 T 14-09-2016 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal ccrud_RS03690 fe67151e46f1c100c183293b27b8ee55 221 Gene3D G3DSA:3.30.160.100 15 111 3.5E-25 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 ccrud_RS03690 fe67151e46f1c100c183293b27b8ee55 221 PANTHER PTHR33231 15 216 5.4E-46 T 14-09-2016 ccrud_RS03690 fe67151e46f1c100c183293b27b8ee55 221 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 16 111 4.0E-19 T 14-09-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 3.8E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 3.8E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 3.8E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 3.8E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 133 149 3.8E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 SUPERFAMILY SSF51735 9 250 8.86E-37 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 PANTHER PTHR24322:SF333 159 190 8.7E-58 T 14-09-2016 ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 PANTHER PTHR24322 13 143 8.7E-58 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 PANTHER PTHR24322 159 190 8.7E-58 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 PANTHER PTHR24322:SF333 13 143 8.7E-58 T 14-09-2016 ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 Pfam PF00106 short chain dehydrogenase 10 202 5.7E-25 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01010 23ee02aba733525e81be1e068c896294 253 Gene3D G3DSA:3.40.50.720 11 224 9.3E-34 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 PANTHER PTHR11533 228 612 1.7E-130 T 14-09-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 PANTHER PTHR11533 21 207 1.7E-130 T 14-09-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 335 347 1.1E-17 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 139 154 1.1E-17 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 316 331 1.1E-17 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 282 292 1.1E-17 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 PANTHER PTHR11533:SF190 228 612 1.7E-130 T 14-09-2016 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 PANTHER PTHR11533:SF190 21 207 1.7E-130 T 14-09-2016 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 Pfam PF01433 Peptidase family M1 18 408 1.1E-69 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 Gene3D G3DSA:1.10.390.10 329 474 1.4E-38 T 14-09-2016 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 SUPERFAMILY SSF55486 229 473 1.39E-73 T 14-09-2016 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 TIGRFAM TIGR02412 pepN_strep_liv: aminopeptidase N 5 863 1.1E-275 T 14-09-2016 IPR012778 Peptidase M1, aminopeptidase GO:0004177|GO:0006508 KEGG: 00480+3.4.11.2|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 SUPERFAMILY SSF63737 5 202 6.28E-37 T 14-09-2016 ccrud_RS10785 4c9af0534ed0dc343bf485dcdf951bd5 867 Pfam PF11838 ERAP1-like C-terminal domain 546 856 1.9E-51 T 14-09-2016 IPR024571 ERAP1-like C-terminal domain ccrud_RS11345 d5aef7d92401b6700dc580ef2c3d2e51 334 Pfam PF00268 Ribonucleotide reductase, small chain 24 289 1.6E-83 T 14-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 ccrud_RS11345 d5aef7d92401b6700dc580ef2c3d2e51 334 TIGRFAM TIGR04171 RNR_1b_NrdF: ribonucleoside-diphosphate reductase, class 1b, beta subunit 21 334 2.7E-143 T 14-09-2016 IPR026494 Ribonucleoside reductase subunit beta, NrdF GO:0005971|GO:0009263 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 ccrud_RS11345 d5aef7d92401b6700dc580ef2c3d2e51 334 ProSitePatterns PS00368 Ribonucleotide reductase small subunit signature. 112 128 - T 14-09-2016 IPR030475 Ribonucleotide reductase small subunit, acitve site KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 ccrud_RS11345 d5aef7d92401b6700dc580ef2c3d2e51 334 PANTHER PTHR23409 24 330 7.9E-98 T 14-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 ccrud_RS11345 d5aef7d92401b6700dc580ef2c3d2e51 334 SUPERFAMILY SSF47240 19 334 2.03E-104 T 14-09-2016 IPR009078 Ferritin-like superfamily ccrud_RS11345 d5aef7d92401b6700dc580ef2c3d2e51 334 Gene3D G3DSA:1.10.620.20 19 290 2.0E-88 T 14-09-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 ccrud_RS11345 d5aef7d92401b6700dc580ef2c3d2e51 334 PIRSF PIRSF000355 7 331 5.4E-77 T 14-09-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 ccrud_RS13650 36e1adafc5a16db700570008aeeca644 375 PANTHER PTHR41517 14 368 1.1E-51 T 14-09-2016 ccrud_RS13650 36e1adafc5a16db700570008aeeca644 375 Pfam PF07883 Cupin domain 113 180 1.1E-20 T 14-09-2016 IPR013096 Cupin 2, conserved barrel ccrud_RS13650 36e1adafc5a16db700570008aeeca644 375 Gene3D G3DSA:2.60.120.10 237 372 8.8E-17 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS13650 36e1adafc5a16db700570008aeeca644 375 Gene3D G3DSA:2.60.120.10 57 197 6.7E-33 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS13650 36e1adafc5a16db700570008aeeca644 375 PANTHER PTHR41517:SF1 14 368 1.1E-51 T 14-09-2016 ccrud_RS13650 36e1adafc5a16db700570008aeeca644 375 SUPERFAMILY SSF51182 26 368 2.88E-100 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 242 258 - T 14-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 Pfam PF03462 PCRF domain 29 217 5.6E-59 T 14-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 PANTHER PTHR11075 24 369 2.3E-144 T 14-09-2016 ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 PANTHER PTHR11075:SF6 24 369 2.3E-144 T 14-09-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 Gene3D G3DSA:1.20.58.410 1 113 4.4E-33 T 14-09-2016 ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 Gene3D G3DSA:3.30.160.20 226 303 3.6E-34 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 SUPERFAMILY SSF75620 28 364 5.62E-123 T 14-09-2016 ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 Pfam PF00472 RF-1 domain 227 334 7.6E-37 T 14-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 Hamap MF_00094 Peptide chain release factor 2 [prfB]. 1 362 38.545 T 14-09-2016 IPR020853 Peptide chain release factor 2, bacterial GO:0005737|GO:0006415|GO:0016149 ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 SMART SM00937 83 192 1.0E-44 T 14-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 ccrud_RS03885 814391a87c4889a9602b90783bf6dc9b 369 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 3 361 7.5E-157 T 14-09-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 PANTHER PTHR24322:SF631 144 176 2.2E-30 T 14-09-2016 ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 131 159 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 PANTHER PTHR24322:SF631 8 128 2.2E-30 T 14-09-2016 ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 Gene3D G3DSA:3.40.50.720 1 224 2.2E-47 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 Pfam PF00106 short chain dehydrogenase 4 186 1.0E-33 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 PANTHER PTHR24322 144 176 2.2E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 118 134 4.6E-19 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 144 163 4.6E-19 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 72 83 4.6E-19 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 4.6E-19 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 182 4.6E-19 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 SUPERFAMILY SSF51735 2 224 2.21E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10950 a388c48f36248f53aa33b8d9b8c59cce 236 PANTHER PTHR24322 8 128 2.2E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946:SF7 220 279 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946 374 543 0.0 T 14-09-2016 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946 310 335 0.0 T 14-09-2016 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946 2 172 0.0 T 14-09-2016 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946 718 952 0.0 T 14-09-2016 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946:SF7 569 686 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 293 477 3.0E-55 T 14-09-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 SUPERFAMILY SSF50677 295 506 9.94E-44 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Gene3D G3DSA:3.40.50.620 721 750 2.1E-132 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Gene3D G3DSA:3.40.50.620 219 294 2.1E-132 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Gene3D G3DSA:3.40.50.620 512 688 2.1E-132 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Gene3D G3DSA:3.40.50.620 21 171 2.1E-132 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 SUPERFAMILY SSF47323 765 953 1.38E-30 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Pfam PF09334 tRNA synthetases class I (M) 64 168 3.9E-14 T 14-09-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 17 952 21.174 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Gene3D G3DSA:3.90.740.10 295 511 3.3E-52 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946 220 279 0.0 T 14-09-2016 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946:SF7 310 335 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946:SF7 374 543 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946:SF7 2 172 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946:SF7 718 952 0.0 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PANTHER PTHR11946 569 686 0.0 T 14-09-2016 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 68 78 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Gene3D G3DSA:1.10.730.10 751 888 1.1E-32 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 Pfam PF08264 Anticodon-binding domain of tRNA 803 914 1.8E-14 T 14-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PRINTS PR00985 Leucyl-tRNA synthetase signature 225 241 2.0E-54 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PRINTS PR00985 Leucyl-tRNA synthetase signature 639 661 2.0E-54 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PRINTS PR00985 Leucyl-tRNA synthetase signature 258 271 2.0E-54 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PRINTS PR00985 Leucyl-tRNA synthetase signature 587 605 2.0E-54 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PRINTS PR00985 Leucyl-tRNA synthetase signature 152 169 2.0E-54 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PRINTS PR00985 Leucyl-tRNA synthetase signature 287 306 2.0E-54 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 PRINTS PR00985 Leucyl-tRNA synthetase signature 672 682 2.0E-54 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 220 953 4.8E-221 T 14-09-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 SUPERFAMILY SSF52374 220 298 1.04E-108 T 14-09-2016 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 SUPERFAMILY SSF52374 503 770 1.04E-108 T 14-09-2016 ccrud_RS13630 b22e185957501792ba442fc3cca507e8 953 SUPERFAMILY SSF52374 22 172 1.04E-108 T 14-09-2016 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PANTHER PTHR11958:SF59 16 439 6.9E-141 T 14-09-2016 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 SUPERFAMILY SSF118215 22 426 2.75E-95 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PANTHER PTHR11958 16 439 6.9E-141 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 Gene3D G3DSA:1.10.3860.10 20 430 6.5E-99 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 Pfam PF00375 Sodium:dicarboxylate symporter family 22 425 1.5E-102 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PRINTS PR00173 Glutamate-aspartate symporter signature 318 344 2.0E-31 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PRINTS PR00173 Glutamate-aspartate symporter signature 170 192 2.0E-31 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PRINTS PR00173 Glutamate-aspartate symporter signature 97 122 2.0E-31 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PRINTS PR00173 Glutamate-aspartate symporter signature 380 400 2.0E-31 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PRINTS PR00173 Glutamate-aspartate symporter signature 18 38 2.0E-31 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PRINTS PR00173 Glutamate-aspartate symporter signature 252 271 2.0E-31 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PRINTS PR00173 Glutamate-aspartate symporter signature 67 87 2.0E-31 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11435 4a397441b39d50440b42a535477aaf1e 462 PRINTS PR00173 Glutamate-aspartate symporter signature 217 236 2.0E-31 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13485 1ec318664fef3edcbb44908dd4b9a347 510 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 76 508 1.3E-155 T 14-09-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 ccrud_RS13485 1ec318664fef3edcbb44908dd4b9a347 510 Pfam PF03796 DnaB-like helicase C terminal domain 252 505 2.4E-98 T 14-09-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 ccrud_RS13485 1ec318664fef3edcbb44908dd4b9a347 510 Gene3D G3DSA:1.10.860.10 76 178 4.9E-36 T 14-09-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal ccrud_RS13485 1ec318664fef3edcbb44908dd4b9a347 510 Gene3D G3DSA:3.40.50.300 242 508 2.1E-106 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13485 1ec318664fef3edcbb44908dd4b9a347 510 PANTHER PTHR30153 60 509 1.5E-177 T 14-09-2016 ccrud_RS13485 1ec318664fef3edcbb44908dd4b9a347 510 SUPERFAMILY SSF52540 252 495 2.81E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13485 1ec318664fef3edcbb44908dd4b9a347 510 SUPERFAMILY SSF48024 74 185 4.58E-36 T 14-09-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 ccrud_RS13485 1ec318664fef3edcbb44908dd4b9a347 510 Pfam PF00772 DnaB-like helicase N terminal domain 76 177 2.9E-33 T 14-09-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 ccrud_RS13485 1ec318664fef3edcbb44908dd4b9a347 510 SMART SM00382 269 466 2.2E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 Gene3D G3DSA:3.30.230.10 4 167 2.4E-46 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 Gene3D G3DSA:3.30.70.890 173 291 1.3E-26 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 PIRSF PIRSF010376 1 303 1.7E-77 T 14-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 PANTHER PTHR20861 2 280 5.2E-64 T 14-09-2016 ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 Pfam PF08544 GHMP kinases C terminal 210 280 5.7E-6 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 PANTHER PTHR20861:SF2 2 280 5.2E-64 T 14-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 2 276 9.0E-49 T 14-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 Pfam PF00288 GHMP kinases N terminal domain 98 154 5.7E-6 T 14-09-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 289 28.69 T 14-09-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 SUPERFAMILY SSF54211 3 166 2.35E-34 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS04505 b1a257f5d9bbcf4bec9bfa1b71e14423 312 SUPERFAMILY SSF55060 173 281 4.08E-20 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain ccrud_RS01310 3ac29eca5e1ef530e9aea1b471913964 423 Pfam PF08353 Domain of unknown function (DUF1727) 311 410 3.7E-23 T 14-09-2016 IPR013564 Domain of unknown function DUF1727 ccrud_RS01310 3ac29eca5e1ef530e9aea1b471913964 423 Gene3D G3DSA:3.40.1190.10 49 292 3.8E-40 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS01310 3ac29eca5e1ef530e9aea1b471913964 423 SUPERFAMILY SSF53623 50 197 3.66E-33 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS01310 3ac29eca5e1ef530e9aea1b471913964 423 SUPERFAMILY SSF53623 227 289 3.66E-33 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS01310 3ac29eca5e1ef530e9aea1b471913964 423 Pfam PF08245 Mur ligase middle domain 64 273 3.2E-16 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS01310 3ac29eca5e1ef530e9aea1b471913964 423 PANTHER PTHR23135 43 415 3.9E-98 T 14-09-2016 ccrud_RS01310 3ac29eca5e1ef530e9aea1b471913964 423 PANTHER PTHR23135:SF7 43 415 3.9E-98 T 14-09-2016 ccrud_RS11195 f2acaf79177b5b9847ea66a29110c19e 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 60 83 6.8E-5 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS11195 f2acaf79177b5b9847ea66a29110c19e 224 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 52 6.8E-5 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS11195 f2acaf79177b5b9847ea66a29110c19e 224 PANTHER PTHR30055 23 214 1.2E-19 T 14-09-2016 ccrud_RS11195 f2acaf79177b5b9847ea66a29110c19e 224 Pfam PF00440 Bacterial regulatory proteins, tetR family 39 82 1.8E-9 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS11195 f2acaf79177b5b9847ea66a29110c19e 224 SUPERFAMILY SSF46689 29 101 8.98E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS11195 f2acaf79177b5b9847ea66a29110c19e 224 Gene3D G3DSA:1.10.357.10 23 218 2.1E-24 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS11195 f2acaf79177b5b9847ea66a29110c19e 224 PANTHER PTHR30055:SF92 23 214 1.2E-19 T 14-09-2016 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 238 255 5.5E-46 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 133 153 5.5E-46 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 56 83 5.5E-46 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 173 197 5.5E-46 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 198 222 5.5E-46 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 6 23 5.5E-46 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 180 321 2.6E-49 T 14-09-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 SUPERFAMILY SSF51735 3 179 6.91E-54 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3 160 4.5E-55 T 14-09-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 SUPERFAMILY SSF48179 179 332 6.12E-52 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 2 323 37.294 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 Gene3D G3DSA:3.40.50.720 4 183 1.4E-65 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 PIRSF PIRSF000114 2 332 1.1E-101 T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 188 209 - T 14-09-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 Gene3D G3DSA:1.10.1040.10 184 330 6.5E-53 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS06445 5b6c9b8b88169da8b4511811636e084a 332 PANTHER PTHR11728 4 332 1.9E-137 T 14-09-2016 ccrud_RS11935 d2ae5db4066a110ed0a0238b35c2bebe 388 Gene3D G3DSA:2.30.40.10 17 70 9.3E-6 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 ccrud_RS11935 d2ae5db4066a110ed0a0238b35c2bebe 388 PANTHER PTHR11113 1 388 4.8E-97 T 14-09-2016 ccrud_RS11935 d2ae5db4066a110ed0a0238b35c2bebe 388 Pfam PF01979 Amidohydrolase family 60 374 7.9E-10 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 ccrud_RS11935 d2ae5db4066a110ed0a0238b35c2bebe 388 SUPERFAMILY SSF51338 26 72 1.44E-5 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 ccrud_RS11935 d2ae5db4066a110ed0a0238b35c2bebe 388 PANTHER PTHR11113:SF7 1 388 4.8E-97 T 14-09-2016 ccrud_RS11935 d2ae5db4066a110ed0a0238b35c2bebe 388 PIRSF PIRSF038994 13 388 1.5E-82 T 14-09-2016 IPR003764 N-acetylglucosamine-6-phosphate deacetylase GO:0006044|GO:0008448 KEGG: 00052+3.5.1.25|KEGG: 00520+3.5.1.25|MetaCyc: PWY-6906|MetaCyc: PWY-7077|MetaCyc: PWY-7395 ccrud_RS11935 d2ae5db4066a110ed0a0238b35c2bebe 388 SUPERFAMILY SSF51556 64 358 1.43E-73 T 14-09-2016 IPR032466 Metal-dependent hydrolase ccrud_RS11935 d2ae5db4066a110ed0a0238b35c2bebe 388 Gene3D G3DSA:3.20.20.140 71 359 2.2E-84 T 14-09-2016 ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 PANTHER PTHR11751 99 122 2.3E-18 T 14-09-2016 ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 PANTHER PTHR11751 12 79 2.3E-18 T 14-09-2016 ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 Gene3D G3DSA:1.10.10.10 9 80 1.2E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 Pfam PF07729 FCD domain 107 226 3.4E-18 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 SMART SM00895 105 228 4.3E-10 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 SMART SM00345 17 76 1.4E-15 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 3.5E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 SUPERFAMILY SSF46785 8 90 1.58E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 Gene3D G3DSA:1.20.120.530 99 237 6.5E-16 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 3.5E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 3.5E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS11955 e05bb87615f15649cf9ac98a9cae9cd2 239 SUPERFAMILY SSF48008 101 235 3.14E-17 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 163 267 3.5E-36 T 14-09-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 SUPERFAMILY SSF51735 3 161 1.74E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 PIRSF PIRSF000193 1 270 6.7E-77 T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 PANTHER PTHR11645:SF0 2 269 1.9E-105 T 14-09-2016 ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 223 245 - T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 SUPERFAMILY SSF48179 163 269 1.87E-32 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 2 267 26.839 T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 3 100 3.6E-25 T 14-09-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 4 267 1.6E-82 T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 Gene3D G3DSA:3.40.50.720 2 161 2.1E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 PANTHER PTHR11645 2 269 1.9E-105 T 14-09-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 ccrud_RS02155 45ef8fe5f779ad7cba1f18a508890804 270 Gene3D G3DSA:1.10.3730.10 163 266 1.4E-37 T 14-09-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 SUPERFAMILY SSF53623 97 323 2.62E-53 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 6 477 39.372 T 14-09-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 Gene3D G3DSA:3.90.190.20 327 476 4.4E-47 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 418 1.1E-17 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 Pfam PF01225 Mur ligase family, catalytic domain 9 111 2.1E-25 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 Pfam PF08245 Mur ligase middle domain 116 304 1.8E-24 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 SUPERFAMILY SSF53244 324 473 2.2E-40 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 9 471 1.5E-143 T 14-09-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 SUPERFAMILY SSF51984 8 98 3.14E-21 T 14-09-2016 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 Gene3D G3DSA:3.40.1190.10 100 326 1.5E-74 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 PANTHER PTHR23135 1 466 1.5E-166 T 14-09-2016 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 PANTHER PTHR23135:SF5 1 466 1.5E-166 T 14-09-2016 ccrud_RS09450 005cbef1e909ecb2d3bafef9d7b383f3 477 Gene3D G3DSA:3.40.50.720 8 99 1.0E-29 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PANTHER PTHR22912:SF180 6 377 7.7E-89 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PANTHER PTHR22912 6 377 7.7E-89 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 313 5.7E-53 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 Gene3D G3DSA:3.50.50.60 5 116 1.8E-20 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 1.6E-13 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 1.6E-13 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 279 286 1.6E-13 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 178 1.6E-13 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 SUPERFAMILY SSF51905 6 198 8.37E-39 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 Pfam PF14759 Reductase C-terminal 332 416 3.9E-29 T 14-09-2016 IPR028202 Reductase, C-terminal ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 SUPERFAMILY SSF51905 151 324 2.07E-29 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 Gene3D G3DSA:3.30.390.30 332 416 3.8E-28 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 Gene3D G3DSA:3.50.50.60 117 322 6.2E-44 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 6.3E-19 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 6.3E-19 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 264 286 6.3E-19 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 6.3E-19 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 6.3E-19 T 14-09-2016 ccrud_RS02795 8ca4307b47ce5b006cac4adf6b253048 423 SUPERFAMILY SSF55424 325 419 5.22E-27 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 Gene3D G3DSA:1.10.150.20 67 135 1.1E-25 T 14-09-2016 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 204 28.149 T 14-09-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 Gene3D G3DSA:2.40.50.140 1 63 6.2E-24 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 SUPERFAMILY SSF47781 64 133 7.08E-19 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 PANTHER PTHR33796 2 206 6.5E-61 T 14-09-2016 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 Pfam PF14520 Helix-hairpin-helix domain 71 129 4.1E-13 T 14-09-2016 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 Pfam PF07499 RuvA, C-terminal domain 158 204 3.4E-11 T 14-09-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 Pfam PF01330 RuvA N terminal domain 1 61 4.3E-20 T 14-09-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 SUPERFAMILY SSF50249 1 62 1.2E-15 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 SUPERFAMILY SSF46929 159 204 1.83E-7 T 14-09-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 Gene3D G3DSA:1.10.8.10 150 206 2.3E-20 T 14-09-2016 ccrud_RS08030 9c406963853555f89431cb9517dccda3 206 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 202 4.5E-38 T 14-09-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 SUPERFAMILY SSF55846 259 450 4.84E-47 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 284 437 4.3E-10 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 PANTHER PTHR11022:SF41 259 402 3.2E-47 T 14-09-2016 ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 Pfam PF08310 LGFP repeat 603 656 5.7E-6 T 14-09-2016 IPR013207 LGFP ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 SMART SM00701 259 402 2.6E-39 T 14-09-2016 IPR006619 Peptidoglycan recognition protein family domain, metazoa/bacteria GO:0008270|GO:0008745|GO:0009253 ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 PANTHER PTHR11022 259 402 3.2E-47 T 14-09-2016 IPR015510 Peptidoglycan recognition protein GO:0008745|GO:0009253 ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 SMART SM00644 272 436 8.8E-6 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 PANTHER PTHR11022 423 447 3.2E-47 T 14-09-2016 IPR015510 Peptidoglycan recognition protein GO:0008745|GO:0009253 ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 Gene3D G3DSA:3.40.80.10 254 454 2.1E-48 T 14-09-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 ccrud_RS13155 a77168cc67bdd62132dba2bcda8165e6 698 PANTHER PTHR11022:SF41 423 447 3.2E-47 T 14-09-2016 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Gene3D G3DSA:1.10.8.60 345 428 3.1E-36 T 14-09-2016 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 PANTHER PTHR11638 7 839 0.0 T 14-09-2016 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 SUPERFAMILY SSF81923 7 157 3.14E-32 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 SMART SM01086 757 846 9.2E-36 T 14-09-2016 IPR019489 Clp ATPase, C-terminal ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 649 667 6.0E-42 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 678 696 6.0E-42 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 711 725 6.0E-42 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 604 622 6.0E-42 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Pfam PF07724 AAA domain (Cdc48 subfamily) 599 750 7.9E-50 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 67 3.6E-10 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 95 146 2.8E-9 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 296 308 - T 14-09-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Gene3D G3DSA:3.40.50.300 553 767 6.1E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 204 307 1.1E-11 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 757 836 9.0E-26 T 14-09-2016 IPR019489 Clp ATPase, C-terminal ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 634 652 - T 14-09-2016 IPR028299 ClpA/B, conserved site 2 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 SUPERFAMILY SSF52540 160 548 1.51E-96 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Gene3D G3DSA:3.40.50.300 160 344 1.6E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Gene3D G3DSA:1.10.1780.10 5 149 1.1E-36 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 SMART SM00382 199 344 7.8E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 SMART SM00382 600 758 4.8E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 SUPERFAMILY SSF52540 549 841 7.49E-79 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 Gene3D G3DSA:1.10.8.60 768 849 1.3E-30 T 14-09-2016 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 7 843 0.0 T 14-09-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 ccrud_RS12540 a2b060e5e404742528b4801e89f90dad 852 PANTHER PTHR11638:SF120 7 839 0.0 T 14-09-2016 ccrud_RS11650 bbf82f49a58b05e6faeb1d6dbbc3a4d9 358 Pfam PF02769 AIR synthase related protein, C-terminal domain 180 347 9.2E-33 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS11650 bbf82f49a58b05e6faeb1d6dbbc3a4d9 358 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 12 341 5.3E-137 T 14-09-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11650 bbf82f49a58b05e6faeb1d6dbbc3a4d9 358 Gene3D G3DSA:3.30.1330.10 28 173 5.7E-54 T 14-09-2016 IPR016188 PurM-like, N-terminal domain ccrud_RS11650 bbf82f49a58b05e6faeb1d6dbbc3a4d9 358 SUPERFAMILY SSF56042 176 348 4.34E-54 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS11650 bbf82f49a58b05e6faeb1d6dbbc3a4d9 358 SUPERFAMILY SSF55326 12 173 2.69E-45 T 14-09-2016 ccrud_RS11650 bbf82f49a58b05e6faeb1d6dbbc3a4d9 358 Gene3D G3DSA:3.90.650.10 176 349 2.7E-65 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS11650 bbf82f49a58b05e6faeb1d6dbbc3a4d9 358 Pfam PF00586 AIR synthase related protein, N-terminal domain 67 168 3.7E-16 T 14-09-2016 IPR016188 PurM-like, N-terminal domain ccrud_RS11650 bbf82f49a58b05e6faeb1d6dbbc3a4d9 358 PANTHER PTHR10520 12 355 1.3E-173 T 14-09-2016 ccrud_RS11650 bbf82f49a58b05e6faeb1d6dbbc3a4d9 358 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 12 351 42.421 T 14-09-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 121 1.7E-66 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 Gene3D G3DSA:2.40.50.140 1 121 4.0E-63 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 121 37.857 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 SUPERFAMILY SSF50249 2 121 6.77E-51 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 PANTHER PTHR11652 1 116 1.3E-72 T 14-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 14-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.1E-58 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.1E-58 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 PRINTS PR01034 Ribosomal protein S12 signature 58 77 2.1E-58 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 PRINTS PR01034 Ribosomal protein S12 signature 110 122 2.1E-58 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 PRINTS PR01034 Ribosomal protein S12 signature 94 110 2.1E-58 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 PRINTS PR01034 Ribosomal protein S12 signature 77 94 2.1E-58 T 14-09-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 Pfam PF00164 Ribosomal protein S12/S23 3 121 2.5E-42 T 14-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02575 c55329ec375b96c2922aac70270ba9c3 122 PIRSF PIRSF002133 1 122 6.8E-53 T 14-09-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 Pfam PF00083 Sugar (and other) transporter 32 474 3.9E-106 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 PANTHER PTHR23500:SF141 26 474 1.2E-177 T 14-09-2016 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 11 471 4.6E-106 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 SUPERFAMILY SSF103473 13 472 7.59E-84 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 PRINTS PR00171 Sugar transporter signature 376 397 2.8E-24 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 PRINTS PR00171 Sugar transporter signature 40 50 2.8E-24 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 PRINTS PR00171 Sugar transporter signature 286 296 2.8E-24 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 PRINTS PR00171 Sugar transporter signature 123 142 2.8E-24 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 PRINTS PR00171 Sugar transporter signature 399 411 2.8E-24 T 14-09-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 PANTHER PTHR23500 26 474 1.2E-177 T 14-09-2016 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 ProSitePatterns PS00217 Sugar transport proteins signature 2. 128 153 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 Gene3D G3DSA:1.20.1250.20 278 474 1.0E-24 T 14-09-2016 ccrud_RS00930 2d901d2f9991a9121799f3dec3af2c91 491 Gene3D G3DSA:1.20.1250.20 34 219 1.1E-30 T 14-09-2016 ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 121 329 5.8E-79 T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 547 564 - T 14-09-2016 IPR001882 Biotin-binding site ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 Gene3D G3DSA:3.30.470.20 210 454 1.2E-92 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 SUPERFAMILY SSF52440 5 119 2.66E-45 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 Gene3D G3DSA:3.40.50.20 8 135 1.0E-46 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 Pfam PF00289 Biotin carboxylase, N-terminal domain 8 116 3.6E-42 T 14-09-2016 IPR005481 Biotin carboxylase-like, N-terminal domain ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 Gene3D G3DSA:2.40.50.100 523 590 2.6E-22 T 14-09-2016 ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 SUPERFAMILY SSF51230 521 590 2.49E-19 T 14-09-2016 IPR011053 Single hybrid motif ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 292 299 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 PANTHER PTHR18866 4 490 8.9E-273 T 14-09-2016 ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 PANTHER PTHR18866 516 591 8.9E-273 T 14-09-2016 ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 Pfam PF02785 Biotin carboxylase C-terminal domain 341 452 2.1E-40 T 14-09-2016 IPR005482 Biotin carboxylase, C-terminal ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 Pfam PF00364 Biotin-requiring enzyme 525 590 2.1E-15 T 14-09-2016 IPR000089 Biotin/lipoyl attachment ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 SUPERFAMILY SSF56059 121 329 4.24E-59 T 14-09-2016 ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 Gene3D G3DSA:3.30.1490.20 136 208 1.0E-24 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 SUPERFAMILY SSF51246 335 455 2.2E-39 T 14-09-2016 IPR011054 Rudiment single hybrid motif ccrud_RS03450 c310d7eeadaa4e8a4507e3e00d7f9455 591 SMART SM00878 341 451 1.9E-58 T 14-09-2016 IPR005482 Biotin carboxylase, C-terminal ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 Gene3D G3DSA:3.30.200.20 12 121 1.0E-21 T 14-09-2016 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 SMART SM00220 20 279 5.8E-58 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 Gene3D G3DSA:1.10.510.10 374 425 1.3E-46 T 14-09-2016 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 Gene3D G3DSA:1.10.510.10 122 282 1.3E-46 T 14-09-2016 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 26 49 - T 14-09-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 PANTHER PTHR24362 361 456 4.6E-86 T 14-09-2016 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 PANTHER PTHR24362:SF160 14 323 4.6E-86 T 14-09-2016 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 144 156 - T 14-09-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 PANTHER PTHR24362 14 323 4.6E-86 T 14-09-2016 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 PANTHER PTHR24362:SF160 361 456 4.6E-86 T 14-09-2016 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 Pfam PF00069 Protein kinase domain 23 268 3.5E-48 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 ccrud_RS00155 8ec0b58ab319e3140115080992a666ed 469 SUPERFAMILY SSF56112 18 282 4.45E-73 T 14-09-2016 IPR011009 Protein kinase-like domain ccrud_RS02885 dc5e136d07e02208bbe62017539a0e80 122 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 5.5E-52 T 14-09-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02885 dc5e136d07e02208bbe62017539a0e80 122 Gene3D G3DSA:4.10.910.10 73 122 6.7E-27 T 14-09-2016 IPR027437 30s ribosomal protein S13, C-terminal ccrud_RS02885 dc5e136d07e02208bbe62017539a0e80 122 PANTHER PTHR10871 1 122 8.7E-68 T 14-09-2016 ccrud_RS02885 dc5e136d07e02208bbe62017539a0e80 122 PIRSF PIRSF002134 1 122 6.1E-45 T 14-09-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02885 dc5e136d07e02208bbe62017539a0e80 122 Pfam PF00416 Ribosomal protein S13/S18 3 109 1.1E-32 T 14-09-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02885 dc5e136d07e02208bbe62017539a0e80 122 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 14-09-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS02885 dc5e136d07e02208bbe62017539a0e80 122 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 120 27.746 T 14-09-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02885 dc5e136d07e02208bbe62017539a0e80 122 SUPERFAMILY SSF46946 2 121 4.86E-45 T 14-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 ccrud_RS02885 dc5e136d07e02208bbe62017539a0e80 122 Gene3D G3DSA:1.10.8.50 1 72 4.4E-28 T 14-09-2016 ccrud_RS08535 246e5141d6cf8b9b4aabc62c2ed05457 327 PANTHER PTHR30349:SF25 6 322 7.2E-80 T 14-09-2016 ccrud_RS08535 246e5141d6cf8b9b4aabc62c2ed05457 327 SUPERFAMILY SSF53850 72 300 6.73E-10 T 14-09-2016 ccrud_RS08535 246e5141d6cf8b9b4aabc62c2ed05457 327 Gene3D G3DSA:3.40.190.10 129 235 1.2E-4 T 14-09-2016 ccrud_RS08535 246e5141d6cf8b9b4aabc62c2ed05457 327 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 68 327 4.2E-33 T 14-09-2016 IPR005064 Bordetella uptake gene GO:0030288 ccrud_RS08535 246e5141d6cf8b9b4aabc62c2ed05457 327 PIRSF PIRSF017082 1 327 7.6E-90 T 14-09-2016 IPR005064 Bordetella uptake gene GO:0030288 ccrud_RS08535 246e5141d6cf8b9b4aabc62c2ed05457 327 PANTHER PTHR30349 6 322 7.2E-80 T 14-09-2016 ccrud_RS08490 1c39fd1aa3edaa1625f7693dc7f10a55 172 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 10 126 6.2E-32 T 14-09-2016 IPR008136 CinA, C-terminal ccrud_RS08490 1c39fd1aa3edaa1625f7693dc7f10a55 172 SUPERFAMILY SSF142433 3 169 1.31E-43 T 14-09-2016 IPR008136 CinA, C-terminal ccrud_RS08490 1c39fd1aa3edaa1625f7693dc7f10a55 172 PANTHER PTHR13939 3 122 2.0E-42 T 14-09-2016 ccrud_RS08490 1c39fd1aa3edaa1625f7693dc7f10a55 172 Gene3D G3DSA:3.90.950.20 3 171 2.4E-56 T 14-09-2016 IPR008136 CinA, C-terminal ccrud_RS08490 1c39fd1aa3edaa1625f7693dc7f10a55 172 PANTHER PTHR13939:SF0 3 122 2.0E-42 T 14-09-2016 ccrud_RS08490 1c39fd1aa3edaa1625f7693dc7f10a55 172 PANTHER PTHR13939:SF0 138 171 2.0E-42 T 14-09-2016 ccrud_RS08490 1c39fd1aa3edaa1625f7693dc7f10a55 172 Pfam PF02464 Competence-damaged protein 3 167 4.9E-45 T 14-09-2016 IPR008136 CinA, C-terminal ccrud_RS08490 1c39fd1aa3edaa1625f7693dc7f10a55 172 PANTHER PTHR13939 138 171 2.0E-42 T 14-09-2016 ccrud_RS00960 36dbf91aca01fe099f3b4da76803c40d 515 PANTHER PTHR10283 18 308 4.8E-82 T 14-09-2016 ccrud_RS00960 36dbf91aca01fe099f3b4da76803c40d 515 PANTHER PTHR10283:SF82 328 509 4.8E-82 T 14-09-2016 ccrud_RS00960 36dbf91aca01fe099f3b4da76803c40d 515 PANTHER PTHR10283 328 509 4.8E-82 T 14-09-2016 ccrud_RS00960 36dbf91aca01fe099f3b4da76803c40d 515 PANTHER PTHR10283:SF82 18 308 4.8E-82 T 14-09-2016 ccrud_RS00960 36dbf91aca01fe099f3b4da76803c40d 515 Pfam PF00939 Sodium:sulfate symporter transmembrane region 30 503 6.2E-63 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS00960 36dbf91aca01fe099f3b4da76803c40d 515 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 45 501 9.5E-71 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 Pfam PF02602 Uroporphyrinogen-III synthase HemD 334 565 2.3E-62 T 14-09-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 Gene3D G3DSA:3.30.950.10 203 324 2.4E-22 T 14-09-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 SUPERFAMILY SSF53790 140 323 4.97E-40 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 SUPERFAMILY SSF53790 46 103 4.97E-40 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 SUPERFAMILY SSF69618 320 572 2.49E-67 T 14-09-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 Gene3D G3DSA:3.40.50.10090 456 573 1.4E-32 T 14-09-2016 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 Gene3D G3DSA:3.40.50.10090 325 449 6.6E-37 T 14-09-2016 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 55 69 - T 14-09-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 Gene3D G3DSA:3.40.1010.10 49 84 4.0E-27 T 14-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 Gene3D G3DSA:3.40.1010.10 123 197 4.0E-27 T 14-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 51 283 9.0E-40 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 PANTHER PTHR21091:SF128 1 84 6.9E-36 T 14-09-2016 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 PANTHER PTHR21091:SF128 110 458 6.9E-36 T 14-09-2016 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 PANTHER PTHR21091 1 84 6.9E-36 T 14-09-2016 ccrud_RS02235 fc9c196e632a30ac715d61c3974b6c0a 594 PANTHER PTHR21091 110 458 6.9E-36 T 14-09-2016 ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 SUPERFAMILY SSF54631 212 346 2.78E-25 T 14-09-2016 ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 PANTHER PTHR22777:SF18 424 468 8.1E-99 T 14-09-2016 ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 PANTHER PTHR22777 424 468 8.1E-99 T 14-09-2016 ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 PANTHER PTHR22777 8 406 8.1E-99 T 14-09-2016 ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 Pfam PF00571 CBS domain 226 274 3.8E-7 T 14-09-2016 IPR000644 CBS domain ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 Pfam PF00571 CBS domain 284 338 2.9E-6 T 14-09-2016 IPR000644 CBS domain ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 Pfam PF01595 Domain of unknown function DUF21 14 204 6.9E-35 T 14-09-2016 IPR002550 Domain of unknown function DUF21 ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 SMART SM01091 354 449 1.7E-11 T 14-09-2016 IPR005170 Transporter-associated domain ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 Gene3D G3DSA:3.30.465.10 333 445 1.7E-18 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 SUPERFAMILY SSF56176 353 447 6.82E-14 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 Pfam PF03471 Transporter associated domain 358 447 3.5E-16 T 14-09-2016 IPR005170 Transporter-associated domain ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 PANTHER PTHR22777:SF18 8 406 8.1E-99 T 14-09-2016 ccrud_RS05765 31fb15a34aa3751141dfd83e8be1c88d 468 Gene3D G3DSA:3.10.580.10 213 332 3.2E-18 T 14-09-2016 ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 Gene3D G3DSA:1.20.200.10 102 452 6.2E-81 T 14-09-2016 ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 ProSitePatterns PS00163 Fumarate lyases signature. 280 289 - T 14-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 Pfam PF10397 Adenylosuccinate lyase C-terminus 370 453 1.5E-14 T 14-09-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 SMART SM00998 369 454 6.5E-24 T 14-09-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 PANTHER PTHR11444:SF2 11 471 2.1E-115 T 14-09-2016 ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 11 453 1.7E-127 T 14-09-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 PRINTS PR00149 Fumarate lyase superfamily signature 98 116 2.1E-9 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 PRINTS PR00149 Fumarate lyase superfamily signature 143 161 2.1E-9 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 PRINTS PR00149 Fumarate lyase superfamily signature 280 296 2.1E-9 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 PANTHER PTHR11444 11 471 2.1E-115 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 SUPERFAMILY SSF48557 10 455 2.67E-83 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 Pfam PF00206 Lyase 29 296 3.3E-20 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal ccrud_RS11720 f426961c555a8533d0bf74a72d5c7071 476 Gene3D G3DSA:1.10.275.10 13 101 6.8E-23 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 PRINTS PR00723 Subtilisin serine protease family (S8) signature 61 80 3.4E-12 T 14-09-2016 IPR015500 Peptidase S8, subtilisin-related ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 PRINTS PR00723 Subtilisin serine protease family (S8) signature 103 116 3.4E-12 T 14-09-2016 IPR015500 Peptidase S8, subtilisin-related ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 PRINTS PR00723 Subtilisin serine protease family (S8) signature 297 313 3.4E-12 T 14-09-2016 IPR015500 Peptidase S8, subtilisin-related ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 Gene3D G3DSA:3.40.50.200 51 337 1.4E-53 T 14-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 PANTHER PTHR10795 60 326 8.5E-31 T 14-09-2016 IPR015500 Peptidase S8, subtilisin-related ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 107 117 - T 14-09-2016 IPR022398 Peptidase S8, subtilisin, His-active site ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 SUPERFAMILY SSF52743 53 342 1.57E-49 T 14-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 TIGRFAM TIGR03921 T7SS_mycosin: type VII secretion-associated serine protease mycosin 51 401 2.2E-102 T 14-09-2016 IPR023834 Type VII secretion system peptidase S8A, mycosin-1 ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 ProSitePatterns PS00136 Serine proteases, subtilase family, aspartic acid active site. 66 76 - T 14-09-2016 IPR023827 Peptidase S8, subtilisin, Asp-active site ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 ProSitePatterns PS00138 Serine proteases, subtilase family, serine active site. 298 308 - T 14-09-2016 IPR023828 Peptidase S8, subtilisin, Ser-active site ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 PANTHER PTHR10795:SF419 60 326 8.5E-31 T 14-09-2016 ccrud_RS02930 9156f6601d70f452f0bbfb92950669ef 404 Pfam PF00082 Subtilase family 61 334 4.3E-31 T 14-09-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 ccrud_RS09180 fb0f593d299b1fcdb2ed219fa8d5fa53 417 Gene3D G3DSA:1.20.1250.20 2 182 1.0E-23 T 14-09-2016 ccrud_RS09180 fb0f593d299b1fcdb2ed219fa8d5fa53 417 Pfam PF07690 Major Facilitator Superfamily 11 323 1.7E-26 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS09180 fb0f593d299b1fcdb2ed219fa8d5fa53 417 Gene3D G3DSA:1.20.1250.20 210 388 1.3E-13 T 14-09-2016 ccrud_RS09180 fb0f593d299b1fcdb2ed219fa8d5fa53 417 SUPERFAMILY SSF103473 6 390 7.72E-42 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS09180 fb0f593d299b1fcdb2ed219fa8d5fa53 417 PANTHER PTHR23531 7 405 1.7E-23 T 14-09-2016 ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 151 1117 0.0 T 14-09-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SMART SM00487 633 825 1.6E-27 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 Pfam PF00270 DEAD/DEAH box helicase 658 799 9.4E-17 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 Gene3D G3DSA:3.40.50.300 833 988 1.6E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SUPERFAMILY SSF143517 1035 1189 7.19E-31 T 14-09-2016 ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SUPERFAMILY SSF52540 815 1023 4.26E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 40 1158 27.733 T 14-09-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SUPERFAMILY SSF52540 401 483 9.52E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 Pfam PF02559 CarD-like/TRCF domain 505 608 2.9E-29 T 14-09-2016 IPR003711 CarD-like/TRCF domain ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 PANTHER PTHR14025:SF21 403 1127 0.0 T 14-09-2016 ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SUPERFAMILY SSF141259 498 579 1.1E-14 T 14-09-2016 IPR003711 CarD-like/TRCF domain ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 Pfam PF03461 TRCF domain 1045 1129 9.6E-23 T 14-09-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 Pfam PF00271 Helicase conserved C-terminal domain 843 942 8.1E-14 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SUPERFAMILY SSF52540 32 316 2.66E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SMART SM00490 859 943 6.7E-15 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SUPERFAMILY SSF52540 558 816 1.96E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 Gene3D G3DSA:3.40.50.300 622 818 1.5E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SMART SM01058 504 609 2.4E-45 T 14-09-2016 IPR003711 CarD-like/TRCF domain ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 Gene3D G3DSA:3.30.2060.10 134 209 7.6E-14 T 14-09-2016 ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 SMART SM00982 1044 1142 1.2E-30 T 14-09-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 ccrud_RS04755 e14bc9bf56f9e8ac0137a72ca2041dfd 1214 PANTHER PTHR14025 403 1127 0.0 T 14-09-2016 ccrud_RS02025 e74314924ebaa2e8b653ce8fa40dc2d9 434 Pfam PF04286 Protein of unknown function (DUF445) 68 430 1.5E-102 T 14-09-2016 IPR007383 Protein of unknown function DUF445 ccrud_RS02025 e74314924ebaa2e8b653ce8fa40dc2d9 434 PANTHER PTHR38442 7 434 1.1E-115 T 14-09-2016 ccrud_RS02010 3b89760c454c8d37455b01c1706cae56 202 SUPERFAMILY SSF46955 11 77 1.47E-7 T 14-09-2016 IPR009061 Putative DNA-binding domain ccrud_RS02010 3b89760c454c8d37455b01c1706cae56 202 Gene3D G3DSA:1.10.10.10 139 194 2.3E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS02010 3b89760c454c8d37455b01c1706cae56 202 SUPERFAMILY SSF46689 123 191 5.02E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS02010 3b89760c454c8d37455b01c1706cae56 202 Pfam PF04255 Protein of unknown function (DUF433) 139 191 1.6E-9 T 14-09-2016 IPR007367 Protein of unknown function DUF433 ccrud_RS02010 3b89760c454c8d37455b01c1706cae56 202 Pfam PF13411 MerR HTH family regulatory protein 11 69 4.5E-8 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS02010 3b89760c454c8d37455b01c1706cae56 202 Gene3D G3DSA:1.10.1660.10 11 74 3.4E-8 T 14-09-2016 ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 ProSitePatterns PS00622 LuxR-type HTH domain signature. 174 201 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 202 2.9E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 174 2.9E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 190 2.9E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 PANTHER PTHR26402:SF151 160 212 2.8E-15 T 14-09-2016 ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 PANTHER PTHR26402 160 212 2.8E-15 T 14-09-2016 ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 Pfam PF00196 Bacterial regulatory proteins, luxR family 160 212 4.0E-18 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 Gene3D G3DSA:1.10.10.10 157 218 7.5E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 SUPERFAMILY SSF46894 153 219 8.84E-19 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS06400 f3481cdce66eb09032d6ae49584d5a14 224 SMART SM00421 157 214 5.9E-22 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 PANTHER PTHR26402 2 203 3.0E-61 T 14-09-2016 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 Pfam PF00072 Response regulator receiver domain 4 117 4.1E-22 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 173 185 2.6E-7 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 143 157 2.6E-7 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 157 173 2.6E-7 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 Gene3D G3DSA:1.10.10.10 123 203 1.9E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 Gene3D G3DSA:3.40.50.2300 1 122 1.6E-26 T 14-09-2016 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 Pfam PF00196 Bacterial regulatory proteins, luxR family 142 195 2.2E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 SMART SM00421 140 197 8.4E-17 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 SMART SM00448 2 117 1.7E-17 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 SUPERFAMILY SSF52172 1 132 2.28E-24 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 SUPERFAMILY SSF46894 130 203 6.8E-16 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS04700 262dd7fa1d1b944546bf59b19a2f90f6 203 PANTHER PTHR26402:SF137 2 203 3.0E-61 T 14-09-2016 ccrud_RS13715 2d28b9250e42a194dd3c9b22db1f751f 281 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 49 62 - T 14-09-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 ccrud_RS13715 2d28b9250e42a194dd3c9b22db1f751f 281 Pfam PF00290 Tryptophan synthase alpha chain 14 257 2.9E-74 T 14-09-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 ccrud_RS13715 2d28b9250e42a194dd3c9b22db1f751f 281 Gene3D G3DSA:3.20.20.70 1 279 7.1E-84 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS13715 2d28b9250e42a194dd3c9b22db1f751f 281 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 13 275 1.1E-79 T 14-09-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 ccrud_RS13715 2d28b9250e42a194dd3c9b22db1f751f 281 SUPERFAMILY SSF51366 1 253 1.32E-73 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS13715 2d28b9250e42a194dd3c9b22db1f751f 281 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 15 277 35.657 T 14-09-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 ccrud_RS01715 aa49b81e8af4e65e72da9ef62afd52a8 285 PANTHER PTHR22572:SF105 2 265 2.4E-148 T 14-09-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 ccrud_RS01715 aa49b81e8af4e65e72da9ef62afd52a8 285 PANTHER PTHR22572 2 265 2.4E-148 T 14-09-2016 ccrud_RS01715 aa49b81e8af4e65e72da9ef62afd52a8 285 Gene3D G3DSA:3.90.550.10 1 256 6.3E-66 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01715 aa49b81e8af4e65e72da9ef62afd52a8 285 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 283 1.3E-134 T 14-09-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 ccrud_RS01715 aa49b81e8af4e65e72da9ef62afd52a8 285 Pfam PF00483 Nucleotidyl transferase 2 235 4.3E-65 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 ccrud_RS01715 aa49b81e8af4e65e72da9ef62afd52a8 285 SUPERFAMILY SSF53448 1 283 3.6E-82 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 Pfam PF02629 CoA binding domain 7 103 1.6E-23 T 14-09-2016 IPR003781 CoA-binding GO:0048037 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 157 184 - T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 Gene3D G3DSA:3.40.50.261 125 290 4.2E-63 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 SMART SM00881 4 104 1.0E-26 T 14-09-2016 IPR003781 CoA-binding GO:0048037 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 Gene3D G3DSA:3.40.50.720 2 124 7.1E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 SUPERFAMILY SSF51735 1 127 1.14E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 PIRSF PIRSF001553 1 294 3.6E-115 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 PANTHER PTHR11117 1 294 4.8E-138 T 14-09-2016 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 SUPERFAMILY SSF52210 128 290 5.89E-45 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 239 252 - T 14-09-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 PRINTS PR01798 Succinyl-CoA synthase signature 211 224 4.8E-34 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 PRINTS PR01798 Succinyl-CoA synthase signature 180 198 4.8E-34 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 PRINTS PR01798 Succinyl-CoA synthase signature 243 260 4.8E-34 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 PRINTS PR01798 Succinyl-CoA synthase signature 86 103 4.8E-34 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 Pfam PF00549 CoA-ligase 157 274 1.4E-13 T 14-09-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS11545 88f723f2f9009a48a22d2b051d21da4c 294 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 3 290 6.4E-122 T 14-09-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 ccrud_RS05160 77a2bc640a796d8bbbc6e3067bb0232e 421 SUPERFAMILY SSF142754 77 413 1.7E-93 T 14-09-2016 ccrud_RS05160 77a2bc640a796d8bbbc6e3067bb0232e 421 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 68 414 4.5E-94 T 14-09-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 ccrud_RS05160 77a2bc640a796d8bbbc6e3067bb0232e 421 Hamap MF_00569 Quinolinate synthase A [nadA]. 67 414 55.676 T 14-09-2016 IPR023515 Quinolinate synthase A, type 3 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 ccrud_RS05160 77a2bc640a796d8bbbc6e3067bb0232e 421 PANTHER PTHR30573 44 414 2.9E-149 T 14-09-2016 ccrud_RS05160 77a2bc640a796d8bbbc6e3067bb0232e 421 PANTHER PTHR30573:SF0 44 414 2.9E-149 T 14-09-2016 ccrud_RS05160 77a2bc640a796d8bbbc6e3067bb0232e 421 Pfam PF02445 Quinolinate synthetase A protein 74 412 1.1E-105 T 14-09-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 ccrud_RS12040 a5cd9128271e2136cec116bbbb8b7a95 385 SUPERFAMILY SSF50998 95 344 1.18E-6 T 14-09-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily ccrud_RS08540 f32e8f4e3cbe59e88c3ffbd71726ee41 496 SUPERFAMILY SSF51905 441 496 6.36E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08540 f32e8f4e3cbe59e88c3ffbd71726ee41 496 SUPERFAMILY SSF51905 10 282 6.36E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08540 f32e8f4e3cbe59e88c3ffbd71726ee41 496 PANTHER PTHR11632 15 496 1.0E-149 T 14-09-2016 ccrud_RS08540 f32e8f4e3cbe59e88c3ffbd71726ee41 496 Gene3D G3DSA:3.50.50.60 438 494 5.5E-71 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08540 f32e8f4e3cbe59e88c3ffbd71726ee41 496 Gene3D G3DSA:3.50.50.60 5 266 5.5E-71 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08540 f32e8f4e3cbe59e88c3ffbd71726ee41 496 Pfam PF00890 FAD binding domain 15 480 5.1E-58 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain ccrud_RS08540 f32e8f4e3cbe59e88c3ffbd71726ee41 496 SUPERFAMILY SSF56425 300 442 2.09E-27 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS08540 f32e8f4e3cbe59e88c3ffbd71726ee41 496 Gene3D G3DSA:3.90.700.10 300 433 8.8E-26 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS08540 f32e8f4e3cbe59e88c3ffbd71726ee41 496 PANTHER PTHR11632:SF49 15 496 1.0E-149 T 14-09-2016 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 PANTHER PTHR24423 199 479 2.6E-74 T 14-09-2016 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 SMART SM00304 205 257 7.1E-15 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 SMART SM00388 258 322 5.4E-17 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 SMART SM00387 362 476 1.2E-21 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 SUPERFAMILY SSF158472 207 254 3.01E-10 T 14-09-2016 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 SUPERFAMILY SSF55874 313 474 8.03E-26 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 Pfam PF00672 HAMP domain 186 253 2.2E-18 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 PANTHER PTHR24423 7 18 2.6E-74 T 14-09-2016 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 473 4.6E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 454 4.6E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 4.6E-12 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 Gene3D G3DSA:1.10.287.130 248 308 1.4E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 SUPERFAMILY SSF47384 241 323 5.89E-18 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 Gene3D G3DSA:3.30.565.10 309 476 7.8E-28 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 Pfam PF00512 His Kinase A (phospho-acceptor) domain 259 322 7.8E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 363 474 1.9E-15 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 PANTHER PTHR24423:SF399 7 18 2.6E-74 T 14-09-2016 ccrud_RS01415 f7984d7b5f321dba7a8ef904f44ae9fd 484 PANTHER PTHR24423:SF399 199 479 2.6E-74 T 14-09-2016 ccrud_RS12625 c0e4a24be6cf183a7144a60c00b947d1 345 SUPERFAMILY SSF50129 1 188 2.28E-52 T 14-09-2016 IPR011032 GroES-like ccrud_RS12625 c0e4a24be6cf183a7144a60c00b947d1 345 Gene3D G3DSA:3.90.180.10 2 176 3.5E-63 T 14-09-2016 IPR011032 GroES-like ccrud_RS12625 c0e4a24be6cf183a7144a60c00b947d1 345 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 140 1.6E-30 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS12625 c0e4a24be6cf183a7144a60c00b947d1 345 SMART SM00829 18 343 2.8E-7 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS12625 c0e4a24be6cf183a7144a60c00b947d1 345 PANTHER PTHR11695 21 341 2.8E-138 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS12625 c0e4a24be6cf183a7144a60c00b947d1 345 SUPERFAMILY SSF51735 145 314 2.39E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12625 c0e4a24be6cf183a7144a60c00b947d1 345 Pfam PF00107 Zinc-binding dehydrogenase 183 309 1.1E-33 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS12625 c0e4a24be6cf183a7144a60c00b947d1 345 Gene3D G3DSA:3.40.50.720 177 293 9.2E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12625 c0e4a24be6cf183a7144a60c00b947d1 345 PANTHER PTHR11695:SF280 21 341 2.8E-138 T 14-09-2016 ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 Pfam PF02562 PhoH-like protein 248 452 3.9E-59 T 14-09-2016 IPR003714 PhoH-like protein GO:0005524 ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 SUPERFAMILY SSF88723 124 170 3.92E-10 T 14-09-2016 IPR029060 PIN domain-like ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 SUPERFAMILY SSF88723 33 91 3.92E-10 T 14-09-2016 IPR029060 PIN domain-like ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 SMART SM00670 32 159 7.4E-13 T 14-09-2016 IPR002716 PIN domain ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 Pfam PF13638 PIN domain 34 172 4.3E-31 T 14-09-2016 IPR002716 PIN domain ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 PANTHER PTHR30473:SF2 31 454 2.1E-163 T 14-09-2016 ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 SUPERFAMILY SSF52540 247 434 2.61E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 Gene3D G3DSA:3.40.50.1010 124 172 1.7E-11 T 14-09-2016 IPR029060 PIN domain-like ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 Gene3D G3DSA:3.40.50.1010 33 91 1.7E-11 T 14-09-2016 IPR029060 PIN domain-like ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 Gene3D G3DSA:3.40.50.300 246 452 7.5E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00330 e481569c504d0e2c6b6ad474d8574b4c 458 PANTHER PTHR30473 31 454 2.1E-163 T 14-09-2016 ccrud_RS01550 9054165c71f333a1efc921dc5fd0526a 379 Gene3D G3DSA:3.40.50.300 162 338 5.9E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01550 9054165c71f333a1efc921dc5fd0526a 379 PANTHER PTHR30258 25 352 1.2E-96 T 14-09-2016 ccrud_RS01550 9054165c71f333a1efc921dc5fd0526a 379 SUPERFAMILY SSF52540 39 332 1.88E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01550 9054165c71f333a1efc921dc5fd0526a 379 Pfam PF00437 Type II/IV secretion system protein 60 336 1.3E-73 T 14-09-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 ccrud_RS01550 9054165c71f333a1efc921dc5fd0526a 379 Gene3D G3DSA:3.30.450.90 56 155 3.9E-19 T 14-09-2016 ccrud_RS01550 9054165c71f333a1efc921dc5fd0526a 379 TIGRFAM TIGR03819 heli_sec_ATPase: helicase/secretion neighborhood ATPase 8 348 1.2E-141 T 14-09-2016 IPR022399 Helicase/secretion neighbourhood ATPase ccrud_RS01550 9054165c71f333a1efc921dc5fd0526a 379 PANTHER PTHR30258:SF12 25 352 1.2E-96 T 14-09-2016 ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 186 377 1.5E-56 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 Gene3D G3DSA:3.40.50.1240 182 387 3.9E-55 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 Gene3D G3DSA:3.30.420.10 3 133 1.1E-18 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 SUPERFAMILY SSF53254 182 384 2.88E-52 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 SMART SM00855 184 338 1.4E-16 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 PANTHER PTHR23029:SF34 172 391 2.0E-85 T 14-09-2016 ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 Pfam PF13456 Reverse transcriptase-like 9 129 1.8E-22 T 14-09-2016 ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 PIRSF PIRSF036922 1 383 7.0E-194 T 14-09-2016 IPR014636 RNase H, phosphoglycerate mutase domain-containing ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 SUPERFAMILY SSF53098 3 128 2.02E-28 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS09860 c0f5fedec1142c8cdb0725fe238dd3eb 391 PANTHER PTHR23029 172 391 2.0E-85 T 14-09-2016 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 SUPERFAMILY SSF51905 3 173 9.48E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 SUPERFAMILY SSF51905 274 388 9.48E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 PANTHER PTHR13789 6 388 1.8E-132 T 14-09-2016 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 1.6E-27 T 14-09-2016 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 1.6E-27 T 14-09-2016 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 152 167 1.6E-27 T 14-09-2016 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 1.6E-27 T 14-09-2016 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 Gene3D G3DSA:3.30.9.10 150 299 1.0E-54 T 14-09-2016 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 Gene3D G3DSA:3.40.50.720 5 70 1.4E-5 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 Pfam PF01494 FAD binding domain 4 342 7.4E-70 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 PANTHER PTHR13789:SF192 6 388 1.8E-132 T 14-09-2016 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 SUPERFAMILY SSF54373 179 275 7.85E-36 T 14-09-2016 ccrud_RS05195 996018147ca05ab818884d0d871e71a2 395 Gene3D G3DSA:3.50.50.60 101 149 1.9E-11 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 SUPERFAMILY SSF56327 162 327 1.7E-54 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 PANTHER PTHR23382:SF0 11 328 2.9E-160 T 14-09-2016 ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 PIRSF PIRSF000102 6 327 3.0E-56 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 Gene3D G3DSA:3.90.110.10 160 327 1.4E-67 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 162 324 1.7E-30 T 14-09-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 TIGRFAM TIGR01759 MalateDH-SF1: malate dehydrogenase 9 324 1.1E-141 T 14-09-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 SUPERFAMILY SSF51735 8 160 3.68E-39 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 Gene3D G3DSA:3.40.50.720 9 157 9.2E-49 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 11 150 1.3E-28 T 14-09-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 Hamap MF_01517 Malate dehydrogenase [mdh]. 6 328 53.23 T 14-09-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 ccrud_RS10590 075b4311c4f3cbcff5057bc21185427e 328 PANTHER PTHR23382 11 328 2.9E-160 T 14-09-2016 IPR010945 Malate dehydrogenase, type 2 GO:0006108|GO:0016615|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 ccrud_RS08895 4d737c15de1fc117c8b369ef78d18a2b 358 PANTHER PTHR10953:SF153 281 336 1.0E-70 T 14-09-2016 ccrud_RS08895 4d737c15de1fc117c8b369ef78d18a2b 358 PANTHER PTHR10953:SF153 4 262 1.0E-70 T 14-09-2016 ccrud_RS08895 4d737c15de1fc117c8b369ef78d18a2b 358 PANTHER PTHR10953 281 336 1.0E-70 T 14-09-2016 ccrud_RS08895 4d737c15de1fc117c8b369ef78d18a2b 358 PANTHER PTHR10953 4 262 1.0E-70 T 14-09-2016 ccrud_RS08895 4d737c15de1fc117c8b369ef78d18a2b 358 TIGRFAM TIGR02356 adenyl_thiF: thiazole biosynthesis adenylyltransferase ThiF 11 216 5.5E-83 T 14-09-2016 IPR012731 Thiazole biosynthesis adenylyltransferase ThiF KEGG: 00730+2.7.7.73|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 ccrud_RS08895 4d737c15de1fc117c8b369ef78d18a2b 358 SUPERFAMILY SSF69572 3 334 2.75E-75 T 14-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 ccrud_RS08895 4d737c15de1fc117c8b369ef78d18a2b 358 Gene3D G3DSA:3.40.50.720 8 248 2.6E-61 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS08895 4d737c15de1fc117c8b369ef78d18a2b 358 Gene3D G3DSA:3.40.250.10 263 357 2.8E-8 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS08895 4d737c15de1fc117c8b369ef78d18a2b 358 Pfam PF00899 ThiF family 13 245 3.3E-59 T 14-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 SUPERFAMILY SSF51905 12 347 1.1E-37 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 Gene3D G3DSA:3.50.50.60 114 346 3.0E-29 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 Gene3D G3DSA:3.50.50.60 12 113 8.9E-22 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 PANTHER PTHR22912 64 190 2.5E-30 T 14-09-2016 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 PANTHER PTHR22912 206 348 2.5E-30 T 14-09-2016 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 PANTHER PTHR22912 1 46 2.5E-30 T 14-09-2016 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 14 338 2.9E-56 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 15 34 8.5E-9 T 14-09-2016 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 170 188 8.5E-9 T 14-09-2016 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 300 322 8.5E-9 T 14-09-2016 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 14 36 9.0E-10 T 14-09-2016 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 170 195 9.0E-10 T 14-09-2016 ccrud_RS07105 e255bfcd8b01e045c38df767c13046ec 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 315 322 9.0E-10 T 14-09-2016 ccrud_RS06070 242d249892fdbc9489133139bb77618f 238 PANTHER PTHR30086:SF0 137 235 4.9E-46 T 14-09-2016 ccrud_RS06070 242d249892fdbc9489133139bb77618f 238 TIGRFAM TIGR00948 2a75: L-lysine exporter 17 226 5.7E-69 T 14-09-2016 IPR004777 L-lysine exporter/arginine exporter GO:0016021 ccrud_RS06070 242d249892fdbc9489133139bb77618f 238 PANTHER PTHR30086:SF0 3 101 4.9E-46 T 14-09-2016 ccrud_RS06070 242d249892fdbc9489133139bb77618f 238 Pfam PF01810 LysE type translocator 15 238 8.4E-62 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 ccrud_RS06070 242d249892fdbc9489133139bb77618f 238 PANTHER PTHR30086 137 235 4.9E-46 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 ccrud_RS06070 242d249892fdbc9489133139bb77618f 238 PANTHER PTHR30086 3 101 4.9E-46 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 SMART SM00855 176 290 0.0011 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 180 249 2.6E-7 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 SUPERFAMILY SSF55811 23 170 5.42E-34 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 PANTHER PTHR22769:SF27 38 234 6.3E-39 T 14-09-2016 ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 PANTHER PTHR22769 38 234 6.3E-39 T 14-09-2016 ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 Pfam PF00293 NUDIX domain 42 153 1.1E-17 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 ProSitePatterns PS00893 Nudix box signature. 76 97 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 Gene3D G3DSA:3.90.79.10 31 168 1.0E-38 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 Gene3D G3DSA:3.40.50.1240 172 319 1.2E-15 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS06440 5c25f14b90f7f5328cbfd9822cec5cb7 336 SUPERFAMILY SSF53254 174 323 6.21E-17 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS02205 4518faec4c4ac4469d4df26395603c31 145 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 142 3.8E-54 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 ccrud_RS02205 4518faec4c4ac4469d4df26395603c31 145 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 14-09-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 ccrud_RS02205 4518faec4c4ac4469d4df26395603c31 145 PIRSF PIRSF001399 1 145 1.0E-57 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 ccrud_RS02205 4518faec4c4ac4469d4df26395603c31 145 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 145 65.902 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 ccrud_RS02205 4518faec4c4ac4469d4df26395603c31 145 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 18 142 2.0E-55 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 ccrud_RS02205 4518faec4c4ac4469d4df26395603c31 145 Pfam PF01220 Dehydroquinase class II 4 140 7.8E-57 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 ccrud_RS02205 4518faec4c4ac4469d4df26395603c31 145 PANTHER PTHR21272 1 145 3.3E-77 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 ccrud_RS02205 4518faec4c4ac4469d4df26395603c31 145 SUPERFAMILY SSF52304 3 143 1.22E-57 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 ccrud_RS02205 4518faec4c4ac4469d4df26395603c31 145 Gene3D G3DSA:3.40.50.9100 3 143 5.8E-61 T 14-09-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 Pfam PF00664 ABC transporter transmembrane region 13 183 3.5E-9 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 Gene3D G3DSA:3.40.50.300 343 516 1.2E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 ProSitePatterns PS00211 ABC transporters family signature. 455 469 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 SUPERFAMILY SSF52540 325 516 5.42E-37 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 TIGRFAM TIGR02868 CydC: thiol reductant ABC exporter, CydC subunit 2 516 5.6E-158 T 14-09-2016 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC GO:0006810|GO:0016021|GO:0042626 ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 SUPERFAMILY SSF90123 10 314 1.03E-28 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 SMART SM00382 348 518 6.4E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 PANTHER PTHR24222 8 516 2.1E-95 T 14-09-2016 ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 Pfam PF00005 ABC transporter 343 482 1.8E-21 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 Gene3D G3DSA:1.20.1560.10 10 314 3.0E-25 T 14-09-2016 ccrud_RS05530 09cc71a17dc95dfbe7ef9aacc7ee1a9e 518 PANTHER PTHR24222:SF30 8 516 2.1E-95 T 14-09-2016 ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 PANTHER PTHR30195 20 565 4.7E-143 T 14-09-2016 ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 PANTHER PTHR30195 590 931 4.7E-143 T 14-09-2016 ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 38 768 1.1E-168 T 14-09-2016 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 PANTHER PTHR30195:SF16 20 565 4.7E-143 T 14-09-2016 ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 PANTHER PTHR30195:SF16 590 931 4.7E-143 T 14-09-2016 ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 SMART SM00487 291 492 1.7E-17 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 34 227 2.5E-46 T 14-09-2016 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 Gene3D G3DSA:3.40.50.300 295 462 3.0E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 Pfam PF12008 Type I restriction and modification enzyme - subunit R C terminal 772 1024 1.8E-67 T 14-09-2016 IPR022625 Type-1 restriction enzyme R protein, C-terminal ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 Pfam PF04851 Type III restriction enzyme, res subunit 293 462 1.6E-32 T 14-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 ccrud_RS06315 42677cacf63f550336b9440c753b7cab 1035 SUPERFAMILY SSF52540 251 463 1.03E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13450 560454a863e2afebdd1b44e2d564c198 121 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 68 1.8E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS13450 560454a863e2afebdd1b44e2d564c198 121 SUPERFAMILY SSF46785 3 82 6.54E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13450 560454a863e2afebdd1b44e2d564c198 121 PANTHER PTHR38445:SF2 3 113 1.8E-16 T 14-09-2016 ccrud_RS13450 560454a863e2afebdd1b44e2d564c198 121 SMART SM00345 9 68 7.8E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS13450 560454a863e2afebdd1b44e2d564c198 121 PANTHER PTHR38445 3 113 1.8E-16 T 14-09-2016 ccrud_RS13450 560454a863e2afebdd1b44e2d564c198 121 Gene3D G3DSA:1.10.10.10 3 72 3.6E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05730 9d7aa830ea0d1a4b7a595d222b544ad4 228 PANTHER PTHR30598:SF1 4 214 6.6E-48 T 14-09-2016 ccrud_RS05730 9d7aa830ea0d1a4b7a595d222b544ad4 228 Pfam PF02613 Nitrate reductase delta subunit 54 177 4.9E-15 T 14-09-2016 IPR020945 DMSO/Nitrate reductase chaperone ccrud_RS05730 9d7aa830ea0d1a4b7a595d222b544ad4 228 SUPERFAMILY SSF89155 18 202 1.57E-29 T 14-09-2016 IPR020945 DMSO/Nitrate reductase chaperone ccrud_RS05730 9d7aa830ea0d1a4b7a595d222b544ad4 228 Gene3D G3DSA:1.10.3480.10 24 159 3.4E-9 T 14-09-2016 IPR020945 DMSO/Nitrate reductase chaperone ccrud_RS05730 9d7aa830ea0d1a4b7a595d222b544ad4 228 TIGRFAM TIGR00684 narJ: nitrate reductase molybdenum cofactor assembly chaperone 31 182 1.5E-31 T 14-09-2016 IPR003765 Nitrate reductase chaperone, NarJ GO:0051082|GO:0051131 ccrud_RS05730 9d7aa830ea0d1a4b7a595d222b544ad4 228 PANTHER PTHR30598 4 214 6.6E-48 T 14-09-2016 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 PANTHER PTHR11938 1 450 5.4E-145 T 14-09-2016 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 PANTHER PTHR11938:SF4 1 450 5.4E-145 T 14-09-2016 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 Gene3D G3DSA:3.50.50.60 96 316 8.2E-65 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 PRINTS PR00419 Adrenodoxin reductase family signature 31 44 1.4E-22 T 14-09-2016 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 PRINTS PR00419 Adrenodoxin reductase family signature 74 84 1.4E-22 T 14-09-2016 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 PRINTS PR00419 Adrenodoxin reductase family signature 6 28 1.4E-22 T 14-09-2016 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 PRINTS PR00419 Adrenodoxin reductase family signature 145 159 1.4E-22 T 14-09-2016 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 Gene3D G3DSA:3.40.50.720 317 448 1.1E-77 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 Gene3D G3DSA:3.40.50.720 4 95 1.1E-77 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 PIRSF PIRSF000362 1 452 3.0E-172 T 14-09-2016 IPR021163 Ferredoxin-NADP+ reductase, adrenodoxin-type GO:0016491|GO:0055114 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 189 2.5E-11 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 SUPERFAMILY SSF51971 4 211 1.41E-54 T 14-09-2016 ccrud_RS12445 a43d06b58069bae8a6a2a4349e46e846 455 SUPERFAMILY SSF51971 260 317 1.41E-54 T 14-09-2016 ccrud_RS12395 02c9bd7a96e0b11a5f49cdaefb0092f2 395 PRINTS PR00173 Glutamate-aspartate symporter signature 363 382 9.0E-5 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS12395 02c9bd7a96e0b11a5f49cdaefb0092f2 395 PRINTS PR00173 Glutamate-aspartate symporter signature 15 35 9.0E-5 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS12395 02c9bd7a96e0b11a5f49cdaefb0092f2 395 PRINTS PR00173 Glutamate-aspartate symporter signature 63 83 9.0E-5 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS12395 02c9bd7a96e0b11a5f49cdaefb0092f2 395 PRINTS PR00173 Glutamate-aspartate symporter signature 201 223 9.0E-5 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS12395 02c9bd7a96e0b11a5f49cdaefb0092f2 395 PANTHER PTHR10010:SF8 55 391 1.2E-38 T 14-09-2016 IPR030147 Sodium-dependent phosphate transporter NptA-like GO:0015114|GO:0035435 ccrud_RS12395 02c9bd7a96e0b11a5f49cdaefb0092f2 395 PANTHER PTHR10010 55 391 1.2E-38 T 14-09-2016 ccrud_RS12395 02c9bd7a96e0b11a5f49cdaefb0092f2 395 Pfam PF02690 Na+/Pi-cotransporter 218 347 2.6E-10 T 14-09-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 ccrud_RS12395 02c9bd7a96e0b11a5f49cdaefb0092f2 395 Pfam PF02690 Na+/Pi-cotransporter 30 148 6.7E-21 T 14-09-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 ccrud_RS08835 ca4a3035e06acf1be99a9a0ba056ead9 315 PANTHER PTHR30349 20 315 1.4E-87 T 14-09-2016 ccrud_RS08835 ca4a3035e06acf1be99a9a0ba056ead9 315 Pfam PF00589 Phage integrase family 134 300 1.2E-46 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ccrud_RS08835 ca4a3035e06acf1be99a9a0ba056ead9 315 Gene3D G3DSA:1.10.150.130 29 120 2.2E-13 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal ccrud_RS08835 ca4a3035e06acf1be99a9a0ba056ead9 315 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 33 109 2.0E-8 T 14-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 ccrud_RS08835 ca4a3035e06acf1be99a9a0ba056ead9 315 SUPERFAMILY SSF56349 129 313 5.0E-54 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ccrud_RS08835 ca4a3035e06acf1be99a9a0ba056ead9 315 PANTHER PTHR30349:SF11 20 315 1.4E-87 T 14-09-2016 ccrud_RS08835 ca4a3035e06acf1be99a9a0ba056ead9 315 SUPERFAMILY SSF47823 30 121 1.12E-9 T 14-09-2016 IPR010998 Integrase, Lambda-type, N-terminal ccrud_RS08835 ca4a3035e06acf1be99a9a0ba056ead9 315 Gene3D G3DSA:1.10.443.10 134 307 1.7E-54 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 ccrud_RS08835 ca4a3035e06acf1be99a9a0ba056ead9 315 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 29 315 31.707 T 14-09-2016 IPR023009 Tyrosine recombinase XerC/XerD ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 7 337 1.5E-86 T 14-09-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 Pfam PF08279 HTH domain 37 65 1.8E-4 T 14-09-2016 IPR013196 Helix-turn-helix, type 11 ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 SUPERFAMILY SSF46785 6 85 4.64E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 PIRSF PIRSF005485 2 342 3.3E-95 T 14-09-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 Gene3D G3DSA:3.30.450.40 179 340 5.3E-34 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 PANTHER PTHR34824 8 339 2.4E-100 T 14-09-2016 ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 Gene3D G3DSA:1.10.10.10 3 87 6.7E-34 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 4 332 25.708 T 14-09-2016 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 Pfam PF01628 HrcA protein C terminal domain 106 325 4.3E-60 T 14-09-2016 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 ccrud_RS10115 b69eefe39ab53f812d0820f88ead32d6 342 SUPERFAMILY SSF55781 74 340 1.37E-55 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS11425 1a73147606c0c43183eb6727b44cc552 264 PANTHER PTHR32022 1 258 2.3E-132 T 14-09-2016 ccrud_RS11425 1a73147606c0c43183eb6727b44cc552 264 Pfam PF07286 Protein of unknown function (DUF1445) 113 255 3.7E-65 T 14-09-2016 IPR009906 Protein of unknown function DUF1445 ccrud_RS11425 1a73147606c0c43183eb6727b44cc552 264 SUPERFAMILY SSF160920 3 256 2.09E-109 T 14-09-2016 ccrud_RS11425 1a73147606c0c43183eb6727b44cc552 264 Gene3D G3DSA:3.40.1640.10 3 165 1.6E-61 T 14-09-2016 ccrud_RS11425 1a73147606c0c43183eb6727b44cc552 264 Hamap MF_01830 UPF0317 protein . 7 263 52.157 T 14-09-2016 IPR016938 Uncharacterised protein family UPF0317 ccrud_RS11425 1a73147606c0c43183eb6727b44cc552 264 PIRSF PIRSF029755 1 264 5.1E-119 T 14-09-2016 IPR016938 Uncharacterised protein family UPF0317 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 21 38 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 SUPERFAMILY SSF55604 9 82 3.4E-19 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 PANTHER PTHR30175:SF1 9 489 4.4E-114 T 14-09-2016 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 Gene3D G3DSA:2.70.70.10 517 665 8.6E-52 T 14-09-2016 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 Gene3D G3DSA:3.30.1360.60 5 82 3.2E-24 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 583 595 - T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 SUPERFAMILY SSF51261 513 649 2.62E-47 T 14-09-2016 IPR011055 Duplicated hybrid motif ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 PANTHER PTHR30175:SF1 519 616 4.4E-114 T 14-09-2016 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 Pfam PF00367 phosphotransferase system, EIIB 10 43 1.7E-16 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 520 644 6.8E-45 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 521 641 3.1E-42 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 PANTHER PTHR30175 519 616 4.4E-114 T 14-09-2016 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 PANTHER PTHR30175 9 489 4.4E-114 T 14-09-2016 ccrud_RS06550 d6eea9cca9ebd2e6cf9269f0f1fc6005 670 Pfam PF02378 Phosphotransferase system, EIIC 120 404 9.0E-29 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 ccrud_RS02965 2d0c08de5d6be0c22a0cca540cba9859 182 ProSitePatterns PS00360 Ribosomal protein S9 signature. 121 139 - T 14-09-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 ccrud_RS02965 2d0c08de5d6be0c22a0cca540cba9859 182 Pfam PF00380 Ribosomal protein S9/S16 62 182 2.4E-41 T 14-09-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02965 2d0c08de5d6be0c22a0cca540cba9859 182 Gene3D G3DSA:3.30.230.10 58 182 6.3E-47 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS02965 2d0c08de5d6be0c22a0cca540cba9859 182 PANTHER PTHR21569 19 182 5.0E-60 T 14-09-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02965 2d0c08de5d6be0c22a0cca540cba9859 182 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 53 182 30.645 T 14-09-2016 IPR023035 Ribosomal protein S9, bacterial/plastid ccrud_RS02965 2d0c08de5d6be0c22a0cca540cba9859 182 SUPERFAMILY SSF54211 58 182 3.72E-43 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS10480 17d541175329f144659335768d1463c0 409 PRINTS PR00474 Glutamate 5-kinase family signature 88 102 1.1E-53 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 ccrud_RS10480 17d541175329f144659335768d1463c0 409 PRINTS PR00474 Glutamate 5-kinase family signature 194 221 1.1E-53 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 ccrud_RS10480 17d541175329f144659335768d1463c0 409 PRINTS PR00474 Glutamate 5-kinase family signature 122 150 1.1E-53 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 ccrud_RS10480 17d541175329f144659335768d1463c0 409 PRINTS PR00474 Glutamate 5-kinase family signature 253 273 1.1E-53 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 ccrud_RS10480 17d541175329f144659335768d1463c0 409 PRINTS PR00474 Glutamate 5-kinase family signature 162 183 1.1E-53 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 ccrud_RS10480 17d541175329f144659335768d1463c0 409 PANTHER PTHR11063 39 407 5.9E-94 T 14-09-2016 ccrud_RS10480 17d541175329f144659335768d1463c0 409 SMART SM00359 318 397 4.3E-22 T 14-09-2016 IPR002478 PUA domain GO:0003723 ccrud_RS10480 17d541175329f144659335768d1463c0 409 SUPERFAMILY SSF88697 318 387 1.93E-16 T 14-09-2016 IPR015947 PUA-like domain ccrud_RS10480 17d541175329f144659335768d1463c0 409 ProSitePatterns PS00902 Glutamate 5-kinase signature. 251 268 - T 14-09-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 ccrud_RS10480 17d541175329f144659335768d1463c0 409 PANTHER PTHR11063:SF12 39 407 5.9E-94 T 14-09-2016 ccrud_RS10480 17d541175329f144659335768d1463c0 409 SUPERFAMILY SSF53633 49 296 1.31E-59 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS10480 17d541175329f144659335768d1463c0 409 Gene3D G3DSA:3.40.1160.10 48 298 4.7E-58 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS10480 17d541175329f144659335768d1463c0 409 Pfam PF00696 Amino acid kinase family 49 278 3.0E-41 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS10480 17d541175329f144659335768d1463c0 409 Pfam PF01472 PUA domain 318 387 7.2E-18 T 14-09-2016 IPR002478 PUA domain GO:0003723 ccrud_RS10480 17d541175329f144659335768d1463c0 409 Hamap MF_00456 Glutamate 5-kinase [proB]. 49 299 34.587 T 14-09-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 ccrud_RS10480 17d541175329f144659335768d1463c0 409 Gene3D G3DSA:2.30.130.10 316 402 2.3E-20 T 14-09-2016 IPR015947 PUA-like domain ccrud_RS10480 17d541175329f144659335768d1463c0 409 PIRSF PIRSF000729 44 406 9.9E-139 T 14-09-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 ccrud_RS10480 17d541175329f144659335768d1463c0 409 TIGRFAM TIGR01027 proB: glutamate 5-kinase 49 402 1.3E-140 T 14-09-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 ccrud_RS07405 86bbc8118a18be7b024ed63aa7222b3c 178 PANTHER PTHR30289:SF0 12 177 1.1E-60 T 14-09-2016 ccrud_RS07405 86bbc8118a18be7b024ed63aa7222b3c 178 SUPERFAMILY SSF49777 24 177 1.7E-46 T 14-09-2016 IPR008914 Phosphatidylethanolamine-binding protein ccrud_RS07405 86bbc8118a18be7b024ed63aa7222b3c 178 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 41 170 3.8E-40 T 14-09-2016 IPR005247 YbhB/YbcL ccrud_RS07405 86bbc8118a18be7b024ed63aa7222b3c 178 PANTHER PTHR30289 12 177 1.1E-60 T 14-09-2016 ccrud_RS07405 86bbc8118a18be7b024ed63aa7222b3c 178 Gene3D G3DSA:3.90.280.10 23 177 1.9E-49 T 14-09-2016 IPR008914 Phosphatidylethanolamine-binding protein ccrud_RS07405 86bbc8118a18be7b024ed63aa7222b3c 178 Pfam PF01161 Phosphatidylethanolamine-binding protein 43 172 1.5E-33 T 14-09-2016 IPR008914 Phosphatidylethanolamine-binding protein ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 SUPERFAMILY SSF101821 84 199 9.06E-30 T 14-09-2016 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 PANTHER PTHR28570 1 417 1.1E-148 T 14-09-2016 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 Gene3D G3DSA:2.30.250.10 83 206 5.8E-35 T 14-09-2016 IPR023358 Peptidase M18, domain 2 GO:0004177 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 Pfam PF02127 Aminopeptidase I zinc metalloprotease (M18) 10 415 6.0E-119 T 14-09-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 Gene3D G3DSA:3.40.630.10 209 418 1.9E-102 T 14-09-2016 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 Gene3D G3DSA:3.40.630.10 2 82 1.9E-102 T 14-09-2016 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 SUPERFAMILY SSF53187 2 83 2.9E-95 T 14-09-2016 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 SUPERFAMILY SSF53187 200 418 2.9E-95 T 14-09-2016 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 105 125 7.6E-36 T 14-09-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 385 400 7.6E-36 T 14-09-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 253 271 7.6E-36 T 14-09-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 296 312 7.6E-36 T 14-09-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 ccrud_RS07280 4f5e001a643151a6ae25c3ac17e0637b 420 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 72 88 7.6E-36 T 14-09-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 PANTHER PTHR22953 213 312 2.6E-95 T 14-09-2016 ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 Pfam PF09423 PhoD-like phosphatase 146 487 9.7E-101 T 14-09-2016 IPR018946 Alkaline phosphatase D-related ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 Gene3D G3DSA:3.60.21.10 157 490 9.3E-11 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 PANTHER PTHR22953:SF28 213 312 2.6E-95 T 14-09-2016 ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 PANTHER PTHR22953 28 191 2.6E-95 T 14-09-2016 ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 PANTHER PTHR22953 328 359 2.6E-95 T 14-09-2016 ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 PANTHER PTHR22953:SF28 28 191 2.6E-95 T 14-09-2016 ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 Pfam PF16655 PhoD-like phosphatase, N-terminal domain 36 133 2.6E-29 T 14-09-2016 IPR032093 Phospholipase D, N-terminal ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 SUPERFAMILY SSF56300 142 481 4.39E-26 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS09970 0af252e3056503dc43ccf7dabcbf055c 516 PANTHER PTHR22953:SF28 328 359 2.6E-95 T 14-09-2016 ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 PANTHER PTHR24093:SF50 32 879 9.7E-81 T 14-09-2016 ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 SUPERFAMILY SSF81653 366 451 5.89E-13 T 14-09-2016 ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 Pfam PF00122 E1-E2 ATPase 318 540 1.9E-33 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 PANTHER PTHR24093 32 879 9.7E-81 T 14-09-2016 ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 SUPERFAMILY SSF56784 556 569 1.08E-26 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 SUPERFAMILY SSF56784 658 869 1.08E-26 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 Gene3D G3DSA:3.40.50.1000 526 567 1.7E-24 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 Gene3D G3DSA:3.40.50.1000 697 841 1.7E-24 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 Gene3D G3DSA:3.40.1110.10 568 696 9.0E-6 T 14-09-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 Pfam PF00702 haloacid dehalogenase-like hydrolase 548 773 4.5E-20 T 14-09-2016 ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 Gene3D G3DSA:2.70.150.10 341 451 2.1E-12 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 359 572 8.8E-20 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 ccrud_RS02260 5977c6341d381d8e09437b2f023272db 879 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 660 853 8.7E-19 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 Gene3D G3DSA:3.40.50.170 107 303 3.5E-53 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 PIRSF PIRSF036480 18 304 2.2E-110 T 14-09-2016 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 SUPERFAMILY SSF55021 20 101 7.5E-14 T 14-09-2016 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 SUPERFAMILY SSF53328 107 304 1.83E-58 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 Gene3D G3DSA:3.30.70.260 16 92 1.3E-18 T 14-09-2016 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 277 302 2.0E-51 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 23 49 2.0E-51 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 107 129 2.0E-51 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 129 156 2.0E-51 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 255 277 2.0E-51 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 55 67 2.0E-51 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 PANTHER PTHR10520:SF7 7 297 1.0E-119 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 18 303 46.845 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 PANTHER PTHR10520 7 297 1.0E-119 T 14-09-2016 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 Pfam PF00551 Formyl transferase 106 283 1.3E-39 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS02055 618d893b1d036ea4c35ec458215e9f42 304 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 22 303 4.6E-97 T 14-09-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 838 902 1.5E-16 T 14-09-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 SUPERFAMILY SSF47323 605 851 2.06E-49 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 SUPERFAMILY SSF52374 20 211 6.72E-132 T 14-09-2016 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 SUPERFAMILY SSF52374 362 602 6.72E-132 T 14-09-2016 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 61 72 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Gene3D G3DSA:3.40.50.620 367 543 2.7E-104 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Gene3D G3DSA:3.40.50.620 44 181 2.7E-104 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 PRINTS PR00986 Valyl-tRNA synthetase signature 250 267 2.0E-37 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 PRINTS PR00986 Valyl-tRNA synthetase signature 490 508 2.0E-37 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 PRINTS PR00986 Valyl-tRNA synthetase signature 367 380 2.0E-37 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 PRINTS PR00986 Valyl-tRNA synthetase signature 459 480 2.0E-37 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 PRINTS PR00986 Valyl-tRNA synthetase signature 54 65 2.0E-37 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 TIGRFAM TIGR00422 valS: valine--tRNA ligase 21 880 1.4E-301 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 PANTHER PTHR11946 11 896 0.0 T 14-09-2016 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 SUPERFAMILY SSF46589 838 902 3.4E-13 T 14-09-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 PANTHER PTHR11946:SF5 11 896 0.0 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 SUPERFAMILY SSF50677 210 359 2.88E-48 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Gene3D G3DSA:1.10.730.10 544 774 5.6E-69 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Gene3D G3DSA:1.10.287.380 833 901 2.9E-6 T 14-09-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 454 587 2.4E-43 T 14-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 33 446 4.5E-143 T 14-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Pfam PF08264 Anticodon-binding domain of tRNA 633 781 4.6E-38 T 14-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Gene3D G3DSA:3.90.740.10 182 364 5.2E-54 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 ccrud_RS10570 16d5e2e99637158db394b4e1b4e30067 903 Hamap MF_02004 Valine--tRNA ligase [valS]. 20 903 14.702 T 14-09-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 ccrud_RS03310 970d985b869139dcdc3f943be94bcdd8 269 Gene3D G3DSA:3.40.50.300 6 238 3.8E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03310 970d985b869139dcdc3f943be94bcdd8 269 SUPERFAMILY SSF52540 4 233 6.37E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03310 970d985b869139dcdc3f943be94bcdd8 269 PANTHER PTHR24220:SF438 8 267 6.5E-137 T 14-09-2016 ccrud_RS03310 970d985b869139dcdc3f943be94bcdd8 269 PANTHER PTHR24220 8 267 6.5E-137 T 14-09-2016 ccrud_RS03310 970d985b869139dcdc3f943be94bcdd8 269 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS03310 970d985b869139dcdc3f943be94bcdd8 269 Pfam PF00005 ABC transporter 23 170 4.2E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS03310 970d985b869139dcdc3f943be94bcdd8 269 SMART SM00382 31 220 7.1E-20 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS02405 f3d43becdd69af02ee1346d284fa1d04 399 PANTHER PTHR11101:SF54 4 372 5.1E-167 T 14-09-2016 ccrud_RS02405 f3d43becdd69af02ee1346d284fa1d04 399 PANTHER PTHR11101 4 372 5.1E-167 T 14-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 ccrud_RS02405 f3d43becdd69af02ee1346d284fa1d04 399 Pfam PF01384 Phosphate transporter family 21 169 1.9E-36 T 14-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 ccrud_RS02405 f3d43becdd69af02ee1346d284fa1d04 399 Pfam PF01384 Phosphate transporter family 170 329 3.4E-48 T 14-09-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 ccrud_RS05335 1e40efe9e5ea7d8f4885ff652808a2ae 386 PANTHER PTHR37043 257 321 1.8E-16 T 14-09-2016 ccrud_RS05335 1e40efe9e5ea7d8f4885ff652808a2ae 386 PANTHER PTHR37043:SF2 257 321 1.8E-16 T 14-09-2016 ccrud_RS05335 1e40efe9e5ea7d8f4885ff652808a2ae 386 SMART SM00507 266 318 2.3E-12 T 14-09-2016 IPR003615 HNH nuclease ccrud_RS05335 1e40efe9e5ea7d8f4885ff652808a2ae 386 Pfam PF01844 HNH endonuclease 288 322 1.4E-8 T 14-09-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 PANTHER PTHR24031 281 295 1.5E-99 T 14-09-2016 ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 SUPERFAMILY SSF52540 210 466 3.0E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 Pfam PF00271 Helicase conserved C-terminal domain 496 601 3.6E-19 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 PANTHER PTHR24031:SF249 281 295 1.5E-99 T 14-09-2016 ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 PANTHER PTHR24031:SF249 312 614 1.5E-99 T 14-09-2016 ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 PANTHER PTHR24031:SF249 638 706 1.5E-99 T 14-09-2016 ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 SUPERFAMILY SSF50249 24 140 1.16E-13 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 SUPERFAMILY SSF50249 167 198 1.16E-13 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 PANTHER PTHR24031 312 614 1.5E-99 T 14-09-2016 ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 PANTHER PTHR24031 638 706 1.5E-99 T 14-09-2016 ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 Gene3D G3DSA:2.40.50.140 51 137 5.6E-11 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 SUPERFAMILY SSF52540 405 613 2.52E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 SMART SM00490 516 601 1.0E-19 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 Gene3D G3DSA:3.40.50.300 468 650 1.2E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 SMART SM00487 278 473 2.2E-33 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 Gene3D G3DSA:3.40.50.300 275 467 2.0E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06475 0f547cbf447b0726664efde9fbb327be 707 Pfam PF00270 DEAD/DEAH box helicase 284 448 3.2E-19 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 Pfam PF02910 Fumarate reductase flavoprotein C-term 535 668 5.0E-32 T 14-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 Gene3D G3DSA:3.50.50.60 428 480 6.1E-70 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 Gene3D G3DSA:3.50.50.60 51 296 6.1E-70 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 SUPERFAMILY SSF56425 291 433 6.88E-33 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 TIGRFAM TIGR01811 sdhA_Bsu: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 62 668 0.0 T 14-09-2016 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279|UniPathway: UPA00223 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 PANTHER PTHR11632:SF53 26 669 6.4E-253 T 14-09-2016 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 SUPERFAMILY SSF46977 527 668 6.15E-36 T 14-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 Gene3D G3DSA:3.90.700.10 297 426 1.0E-20 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 PANTHER PTHR11632 26 669 6.4E-253 T 14-09-2016 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 SUPERFAMILY SSF51905 55 307 1.61E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 SUPERFAMILY SSF51905 436 479 1.61E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 Gene3D G3DSA:1.20.58.100 507 624 5.1E-28 T 14-09-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 435 457 5.3E-5 T 14-09-2016 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 62 81 5.3E-5 T 14-09-2016 ccrud_RS01980 59dfb3ed43419120b605d3bf31515a34 669 Pfam PF00890 FAD binding domain 62 471 1.8E-57 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 Gene3D G3DSA:1.10.8.10 3 83 1.3E-16 T 14-09-2016 ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 PANTHER PTHR18895 6 277 2.2E-66 T 14-09-2016 ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 Gene3D G3DSA:3.40.50.150 85 277 3.5E-52 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 SUPERFAMILY SSF53335 4 275 6.22E-46 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 4 277 39.514 T 14-09-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 Pfam PF05175 Methyltransferase small domain 109 193 5.3E-10 T 14-09-2016 IPR007848 Methyltransferase small domain GO:0008168 ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 26 273 5.9E-68 T 14-09-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 51 276 5.0E-41 T 14-09-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 PANTHER PTHR18895:SF64 6 277 2.2E-66 T 14-09-2016 ccrud_RS05800 61f60103277108ac8b596c311dd7251c 278 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 183 189 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 PANTHER PTHR11638:SF18 1 139 0.0 T 14-09-2016 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 322 334 - T 14-09-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Gene3D G3DSA:3.40.50.300 517 755 2.2E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 SUPERFAMILY SSF52540 513 828 3.08E-76 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 SMART SM01086 744 837 6.5E-34 T 14-09-2016 IPR019489 Clp ATPase, C-terminal ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 744 824 7.5E-25 T 14-09-2016 IPR019489 Clp ATPase, C-terminal ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 PANTHER PTHR11638 1 139 0.0 T 14-09-2016 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Pfam PF07724 AAA domain (Cdc48 subfamily) 563 738 2.2E-48 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 142 1.1E-13 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 68 1.5E-19 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Pfam PF02151 UvrB/uvrC motif 444 478 6.1E-8 T 14-09-2016 IPR001943 UVR domain GO:0005515 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Gene3D G3DSA:1.10.8.60 372 455 7.0E-34 T 14-09-2016 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Gene3D G3DSA:1.10.1780.10 1 142 5.9E-51 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Gene3D G3DSA:1.10.8.60 756 828 6.8E-29 T 14-09-2016 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 SUPERFAMILY SSF52540 190 488 1.16E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 232 353 5.9E-12 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 PANTHER PTHR11638 170 854 0.0 T 14-09-2016 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 SUPERFAMILY SSF81923 3 144 1.77E-31 T 14-09-2016 IPR004176 Clp, N-terminal GO:0019538 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 SMART SM00382 227 371 6.6E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 SMART SM00382 564 745 1.1E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 PANTHER PTHR11638:SF18 170 854 0.0 T 14-09-2016 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 Gene3D G3DSA:3.40.50.300 190 370 1.8E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 568 586 1.8E-38 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 642 660 1.8E-38 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 689 1.8E-38 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS12050 b7459e58509bb0abef14107211e15f70 925 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 613 631 1.8E-38 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 SUPERFAMILY SSF53218 184 329 2.36E-27 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 Pfam PF03453 MoeA N-terminal region (domain I and II) 3 174 3.0E-28 T 14-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 SUPERFAMILY SSF63867 335 415 1.83E-12 T 14-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 Gene3D G3DSA:2.170.190.11 44 137 1.1E-30 T 14-09-2016 ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 Pfam PF00994 Probable molybdopterin binding domain 188 324 6.0E-16 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 PANTHER PTHR10192:SF12 1 417 1.4E-115 T 14-09-2016 ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 Gene3D G3DSA:3.40.980.10 170 338 6.0E-45 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 PANTHER PTHR10192 1 417 1.4E-115 T 14-09-2016 ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 Pfam PF03454 MoeA C-terminal region (domain IV) 339 415 1.7E-13 T 14-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 SUPERFAMILY SSF63882 2 183 3.14E-41 T 14-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 Gene3D G3DSA:2.40.340.10 339 415 1.5E-14 T 14-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 SMART SM00852 187 326 5.0E-20 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS04360 45f4740f06cdf928926c3f7683fb2b95 419 Gene3D G3DSA:3.90.105.10 138 169 3.7E-19 T 14-09-2016 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 Gene3D G3DSA:3.40.50.300 8 224 2.2E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 72 87 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 SUPERFAMILY SSF52540 17 242 1.71E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 SUPERFAMILY SSF50465 322 423 2.54E-18 T 14-09-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 Gene3D G3DSA:2.40.30.10 234 335 3.0E-16 T 14-09-2016 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 PRINTS PR00315 GTP-binding elongation factor signature 99 109 7.4E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 PRINTS PR00315 GTP-binding elongation factor signature 20 33 7.4E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 PRINTS PR00315 GTP-binding elongation factor signature 152 161 7.4E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 PRINTS PR00315 GTP-binding elongation factor signature 79 87 7.4E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 PRINTS PR00315 GTP-binding elongation factor signature 115 126 7.4E-11 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 PANTHER PTHR23115 4 42 1.9E-55 T 14-09-2016 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 PANTHER PTHR23115 60 330 1.9E-55 T 14-09-2016 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 Pfam PF00009 Elongation factor Tu GTP binding domain 18 203 5.6E-39 T 14-09-2016 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 SUPERFAMILY SSF50447 231 317 8.08E-13 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 Gene3D G3DSA:2.40.30.10 336 423 1.2E-4 T 14-09-2016 ccrud_RS12650 dfb02dda3688fcfce94a795ae74e8e6b 433 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 19 423 7.2E-179 T 14-09-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 ccrud_RS09305 072d64ea8acd4d1b4fc7e56e9597c73d 436 Gene3D G3DSA:3.40.50.1100 157 348 5.2E-53 T 14-09-2016 ccrud_RS09305 072d64ea8acd4d1b4fc7e56e9597c73d 436 SUPERFAMILY SSF53686 24 380 2.23E-92 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS09305 072d64ea8acd4d1b4fc7e56e9597c73d 436 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 343 435 1.6E-28 T 14-09-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 ccrud_RS09305 072d64ea8acd4d1b4fc7e56e9597c73d 436 PANTHER PTHR10314:SF30 3 384 9.7E-134 T 14-09-2016 ccrud_RS09305 072d64ea8acd4d1b4fc7e56e9597c73d 436 PANTHER PTHR10314 3 384 9.7E-134 T 14-09-2016 ccrud_RS09305 072d64ea8acd4d1b4fc7e56e9597c73d 436 Gene3D G3DSA:3.40.50.1100 69 156 7.6E-27 T 14-09-2016 ccrud_RS09305 072d64ea8acd4d1b4fc7e56e9597c73d 436 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 61 74 - T 14-09-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 ccrud_RS09305 072d64ea8acd4d1b4fc7e56e9597c73d 436 TIGRFAM TIGR02079 THD1: threonine dehydratase 25 435 1.9E-171 T 14-09-2016 IPR011820 L-threonine dehydratase biosynthetic IlvA GO:0004794 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 ccrud_RS09305 072d64ea8acd4d1b4fc7e56e9597c73d 436 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 34 330 4.6E-68 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS06620 a4a0ffa39f83040d6bc512437b8c4106 64 PRINTS PR00064 Ribosomal protein L35 signature 2 19 1.1E-15 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 ccrud_RS06620 a4a0ffa39f83040d6bc512437b8c4106 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 1.1E-15 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 ccrud_RS06620 a4a0ffa39f83040d6bc512437b8c4106 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 1.1E-15 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 ccrud_RS06620 a4a0ffa39f83040d6bc512437b8c4106 64 PANTHER PTHR33343 2 61 1.7E-19 T 14-09-2016 ccrud_RS06620 a4a0ffa39f83040d6bc512437b8c4106 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 13.991 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 ccrud_RS06620 a4a0ffa39f83040d6bc512437b8c4106 64 Pfam PF01632 Ribosomal protein L35 2 61 4.9E-21 T 14-09-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS06620 a4a0ffa39f83040d6bc512437b8c4106 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 62 2.2E-21 T 14-09-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 ccrud_RS06620 a4a0ffa39f83040d6bc512437b8c4106 64 SUPERFAMILY SSF143034 1 62 1.12E-19 T 14-09-2016 ccrud_RS07120 c363a0d1219eb82d95a267c58a25932d 158 Pfam PF00156 Phosphoribosyl transferase domain 9 149 5.1E-22 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 ccrud_RS07120 c363a0d1219eb82d95a267c58a25932d 158 Gene3D G3DSA:3.40.50.2020 6 152 1.0E-35 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS07120 c363a0d1219eb82d95a267c58a25932d 158 SUPERFAMILY SSF53271 7 149 2.13E-24 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS07120 c363a0d1219eb82d95a267c58a25932d 158 PANTHER PTHR22573 1 148 2.6E-18 T 14-09-2016 ccrud_RS07120 c363a0d1219eb82d95a267c58a25932d 158 PANTHER PTHR22573:SF51 1 148 2.6E-18 T 14-09-2016 ccrud_RS08560 8ce59ca25f1b64ccd05813ef9279e0ac 250 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 29 230 4.6E-54 T 14-09-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 ccrud_RS08560 8ce59ca25f1b64ccd05813ef9279e0ac 250 SUPERFAMILY SSF69796 24 235 1.31E-57 T 14-09-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 ccrud_RS08560 8ce59ca25f1b64ccd05813ef9279e0ac 250 Pfam PF02511 Thymidylate synthase complementing protein 31 224 1.4E-50 T 14-09-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 ccrud_RS08560 8ce59ca25f1b64ccd05813ef9279e0ac 250 Hamap MF_01408 Thymidylate synthase ThyX [thyX]. 7 238 26.54 T 14-09-2016 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|KEGG: 00670+2.1.1.148|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6545|MetaCyc: PWY-6936|MetaCyc: PWY-702 ccrud_RS08560 8ce59ca25f1b64ccd05813ef9279e0ac 250 PANTHER PTHR34934 16 250 2.4E-45 T 14-09-2016 ccrud_RS00885 6f300b5c9ae20e024c6b92dffe8e4939 332 SUPERFAMILY SSF47413 5 63 7.88E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS00885 6f300b5c9ae20e024c6b92dffe8e4939 332 PANTHER PTHR30146 5 330 5.3E-82 T 14-09-2016 ccrud_RS00885 6f300b5c9ae20e024c6b92dffe8e4939 332 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 8.2E-16 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS00885 6f300b5c9ae20e024c6b92dffe8e4939 332 SUPERFAMILY SSF53822 65 329 1.77E-53 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS00885 6f300b5c9ae20e024c6b92dffe8e4939 332 Pfam PF13377 Periplasmic binding protein-like domain 169 327 2.8E-32 T 14-09-2016 ccrud_RS00885 6f300b5c9ae20e024c6b92dffe8e4939 332 Gene3D G3DSA:3.40.50.2300 58 168 2.3E-27 T 14-09-2016 ccrud_RS00885 6f300b5c9ae20e024c6b92dffe8e4939 332 SMART SM00354 5 75 2.2E-26 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS00885 6f300b5c9ae20e024c6b92dffe8e4939 332 Gene3D G3DSA:3.40.50.2300 169 329 2.0E-42 T 14-09-2016 ccrud_RS00885 6f300b5c9ae20e024c6b92dffe8e4939 332 Gene3D G3DSA:1.10.260.40 6 57 2.1E-21 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS06945 035ccf3651fc01bb3b2ead087fbf75da 517 PANTHER PTHR10110 1 494 1.0E-52 T 14-09-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 ccrud_RS06945 035ccf3651fc01bb3b2ead087fbf75da 517 Pfam PF00999 Sodium/hydrogen exchanger family 9 404 1.4E-39 T 14-09-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 ccrud_RS06945 035ccf3651fc01bb3b2ead087fbf75da 517 PANTHER PTHR10110:SF120 1 494 1.0E-52 T 14-09-2016 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 PANTHER PTHR11374 1 435 1.4E-195 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 320 419 2.0E-27 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 Gene3D G3DSA:1.20.5.100 205 230 2.3E-16 T 14-09-2016 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 Gene3D G3DSA:3.40.50.720 1 204 1.5E-68 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 SUPERFAMILY SSF52413 310 429 5.36E-33 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 SMART SM00984 319 420 1.3E-41 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 SUPERFAMILY SSF48179 201 299 1.05E-26 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 SUPERFAMILY SSF51735 2 189 5.33E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 PIRSF PIRSF000124 1 435 6.9E-119 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 202 295 2.5E-30 T 14-09-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 Gene3D G3DSA:3.40.50.720 232 436 1.6E-68 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 2 416 6.8E-129 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 PANTHER PTHR11374:SF18 1 435 1.4E-195 T 14-09-2016 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 PIRSF PIRSF500134 1 437 1.4E-154 T 14-09-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 ccrud_RS12845 552ef04253d67bb374b27d4dc9016981 437 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2 177 6.9E-57 T 14-09-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 PANTHER PTHR23151 134 664 2.3E-199 T 14-09-2016 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 138 167 - T 14-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Pfam PF00364 Biotin-requiring enzyme 115 187 9.4E-24 T 14-09-2016 IPR000089 Biotin/lipoyl attachment ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Pfam PF00364 Biotin-requiring enzyme 5 76 2.7E-22 T 14-09-2016 IPR000089 Biotin/lipoyl attachment ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Pfam PF00364 Biotin-requiring enzyme 233 305 9.4E-24 T 14-09-2016 IPR000089 Biotin/lipoyl attachment ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 TIGRFAM TIGR02927 SucB_Actino: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 193 674 2.7E-230 T 14-09-2016 IPR014276 2-oxoglutarate dehydrogenase, E2 component KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 SUPERFAMILY SSF52777 434 665 3.38E-74 T 14-09-2016 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 SUPERFAMILY SSF51230 113 206 8.25E-28 T 14-09-2016 IPR011053 Single hybrid motif ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 SUPERFAMILY SSF51230 231 324 8.25E-28 T 14-09-2016 IPR011053 Single hybrid motif ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 14-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 PANTHER PTHR23151:SF8 134 664 2.3E-199 T 14-09-2016 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 SUPERFAMILY SSF51230 1 95 4.97E-27 T 14-09-2016 IPR011053 Single hybrid motif ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Gene3D G3DSA:2.40.50.100 111 206 2.6E-30 T 14-09-2016 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Gene3D G3DSA:2.40.50.100 1 95 9.2E-29 T 14-09-2016 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Gene3D G3DSA:2.40.50.100 229 324 2.6E-30 T 14-09-2016 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Gene3D G3DSA:3.30.559.10 432 666 1.3E-76 T 14-09-2016 IPR023213 Chloramphenicol acetyltransferase-like domain ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Gene3D G3DSA:4.10.320.10 367 415 1.6E-17 T 14-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 439 666 6.8E-73 T 14-09-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 SUPERFAMILY SSF47005 363 409 2.22E-12 T 14-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 256 285 - T 14-09-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site ccrud_RS09720 9ab3517c9208027547fd87654792ea6c 674 Pfam PF02817 e3 binding domain 371 405 1.1E-13 T 14-09-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 ccrud_RS00515 369c9b27adfabc6702c2c740be40e964 205 Hamap MF_01389 Urease accessory protein UreG [ureG]. 2 200 44.51 T 14-09-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 ccrud_RS00515 369c9b27adfabc6702c2c740be40e964 205 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 175 1.5E-34 T 14-09-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain ccrud_RS00515 369c9b27adfabc6702c2c740be40e964 205 PANTHER PTHR31715 3 205 4.8E-112 T 14-09-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 ccrud_RS00515 369c9b27adfabc6702c2c740be40e964 205 PIRSF PIRSF005624 2 205 2.4E-49 T 14-09-2016 ccrud_RS00515 369c9b27adfabc6702c2c740be40e964 205 Gene3D G3DSA:3.40.50.300 3 194 3.4E-15 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00515 369c9b27adfabc6702c2c740be40e964 205 SUPERFAMILY SSF52540 3 195 7.64E-33 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00515 369c9b27adfabc6702c2c740be40e964 205 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 4 200 3.9E-92 T 14-09-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 ccrud_RS02810 16e47951a7537262af65215b10f8b8ce 630 Pfam PF00391 PEP-utilising enzyme, mobile domain 529 600 3.5E-22 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 ccrud_RS02810 16e47951a7537262af65215b10f8b8ce 630 PANTHER PTHR22931 94 141 2.6E-31 T 14-09-2016 ccrud_RS02810 16e47951a7537262af65215b10f8b8ce 630 PANTHER PTHR22931:SF7 94 141 2.6E-31 T 14-09-2016 ccrud_RS02810 16e47951a7537262af65215b10f8b8ce 630 PANTHER PTHR22931 514 602 2.6E-31 T 14-09-2016 ccrud_RS02810 16e47951a7537262af65215b10f8b8ce 630 PANTHER PTHR22931:SF7 514 602 2.6E-31 T 14-09-2016 ccrud_RS02810 16e47951a7537262af65215b10f8b8ce 630 Gene3D G3DSA:3.50.30.10 498 603 9.0E-30 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 ccrud_RS02810 16e47951a7537262af65215b10f8b8ce 630 SUPERFAMILY SSF52009 499 604 2.75E-29 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 SUPERFAMILY SSF53850 88 294 2.53E-30 T 14-09-2016 ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 SUPERFAMILY SSF46785 2 86 1.22E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 Gene3D G3DSA:3.40.190.10 177 262 3.6E-21 T 14-09-2016 ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 Gene3D G3DSA:3.40.190.10 90 176 5.1E-20 T 14-09-2016 ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 Pfam PF03466 LysR substrate binding domain 87 288 1.0E-30 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.0E-21 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 Gene3D G3DSA:1.10.10.10 2 84 1.1E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.5E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.5E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.5E-8 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS11805 5d2330ea047e63bc58220d71bdaf0f62 295 PANTHER PTHR30346 1 293 5.8E-73 T 14-09-2016 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 SUPERFAMILY SSF51556 68 383 7.38E-97 T 14-09-2016 IPR032466 Metal-dependent hydrolase ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 Gene3D G3DSA:3.20.20.140 83 424 2.2E-100 T 14-09-2016 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 PANTHER PTHR11647 1 442 1.8E-165 T 14-09-2016 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 Hamap MF_00220_B Dihydroorotase [pyrC]. 21 442 43.466 T 14-09-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 PANTHER PTHR11647:SF70 1 442 1.8E-165 T 14-09-2016 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 ProSitePatterns PS00482 Dihydroorotase signature 1. 71 79 - T 14-09-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 SUPERFAMILY SSF51338 22 67 2.88E-20 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 SUPERFAMILY SSF51338 384 442 2.88E-20 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 Gene3D G3DSA:2.30.40.10 22 82 1.7E-15 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 35 441 1.5E-141 T 14-09-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 ProSitePatterns PS00483 Dihydroorotase signature 2. 318 329 - T 14-09-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07790 5d9f05351dbea26f228304884ef63c77 447 Pfam PF01979 Amidohydrolase family 64 437 7.7E-25 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 6 383 38.196 T 14-09-2016 IPR000158 Cell division protein FtsZ GO:0005525 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 Pfam PF12327 FtsZ family, C-terminal domain 219 313 6.5E-34 T 14-09-2016 IPR024757 Cell division protein FtsZ, C-terminal ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 ProSitePatterns PS01134 FtsZ protein signature 1. 41 75 - T 14-09-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 10 169 4.0E-41 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 SUPERFAMILY SSF52490 9 205 2.35E-68 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 PRINTS PR00423 Cell division protein FtsZ signature 123 144 3.3E-51 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 PRINTS PR00423 Cell division protein FtsZ signature 209 230 3.3E-51 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 PRINTS PR00423 Cell division protein FtsZ signature 95 115 3.3E-51 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 PRINTS PR00423 Cell division protein FtsZ signature 186 208 3.3E-51 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 6 322 6.7E-129 T 14-09-2016 IPR000158 Cell division protein FtsZ GO:0005525 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 SUPERFAMILY SSF55307 201 314 7.33E-42 T 14-09-2016 IPR008280 Tubulin/FtsZ, C-terminal ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 PANTHER PTHR30314 5 355 3.2E-186 T 14-09-2016 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 SMART SM00865 204 321 9.2E-54 T 14-09-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 SMART SM00864 10 202 5.2E-111 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 ProSitePatterns PS01135 FtsZ protein signature 2. 94 115 - T 14-09-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 PANTHER PTHR30314:SF3 5 355 3.2E-186 T 14-09-2016 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 Gene3D G3DSA:3.40.50.1440 9 211 7.5E-93 T 14-09-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 ccrud_RS09440 970a5232ee475d85d11f66d3005abf39 446 Gene3D G3DSA:3.30.1330.20 212 315 6.7E-46 T 14-09-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain ccrud_RS04995 f800ed4d9b13c69bc7de6d23c556329d 393 SUPERFAMILY SSF103473 12 390 1.01E-59 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS04995 f800ed4d9b13c69bc7de6d23c556329d 393 Gene3D G3DSA:1.20.1250.20 201 384 5.0E-15 T 14-09-2016 ccrud_RS04995 f800ed4d9b13c69bc7de6d23c556329d 393 Gene3D G3DSA:1.20.1250.20 14 194 3.8E-28 T 14-09-2016 ccrud_RS04995 f800ed4d9b13c69bc7de6d23c556329d 393 PANTHER PTHR23501:SF4 12 390 1.3E-127 T 14-09-2016 ccrud_RS04995 f800ed4d9b13c69bc7de6d23c556329d 393 Pfam PF07690 Major Facilitator Superfamily 17 326 4.3E-39 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS04995 f800ed4d9b13c69bc7de6d23c556329d 393 PANTHER PTHR23501 12 390 1.3E-127 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 Gene3D G3DSA:3.50.50.60 264 338 1.5E-18 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PANTHER PTHR22912 1 465 5.2E-127 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 Gene3D G3DSA:3.30.390.30 339 464 4.5E-40 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 Gene3D G3DSA:3.50.50.60 9 154 1.9E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 SUPERFAMILY SSF51905 8 375 2.83E-40 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 43 53 - T 14-09-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 TIGRFAM TIGR03452 mycothione_red: mycothione reductase 9 465 2.6E-241 T 14-09-2016 IPR017817 Mycothione reductase MetaCyc: PWY-6421 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 12 331 7.8E-47 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 1.2E-21 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 268 284 1.2E-21 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 296 318 1.2E-21 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 161 1.2E-21 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 182 200 1.2E-21 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 Gene3D G3DSA:3.50.50.60 157 263 1.9E-27 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 352 461 3.9E-29 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 SUPERFAMILY SSF55424 349 463 3.26E-32 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 348 369 6.6E-43 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 269 283 6.6E-43 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 146 155 6.6E-43 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 413 428 6.6E-43 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 311 318 6.6E-43 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 182 207 6.6E-43 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 12 34 6.6E-43 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PANTHER PTHR22912:SF125 1 465 5.2E-127 T 14-09-2016 ccrud_RS08715 ba9a70758afc2a038e73e8110a8f79c3 467 PIRSF PIRSF000350 1 448 1.3E-82 T 14-09-2016 ccrud_RS03220 342347cdb57df18f0614ca54960a8ae0 298 Pfam PF03180 NLPA lipoprotein 43 278 1.2E-55 T 14-09-2016 IPR004872 Lipoprotein NlpA family ccrud_RS03220 342347cdb57df18f0614ca54960a8ae0 298 Gene3D G3DSA:3.40.190.10 42 166 2.3E-39 T 14-09-2016 ccrud_RS03220 342347cdb57df18f0614ca54960a8ae0 298 PANTHER PTHR30429 1 280 5.1E-69 T 14-09-2016 IPR004872 Lipoprotein NlpA family ccrud_RS03220 342347cdb57df18f0614ca54960a8ae0 298 SUPERFAMILY SSF53850 42 291 8.79E-64 T 14-09-2016 ccrud_RS01765 fcd0b9b5882a0c3c9f500b30daa3db70 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 1 52 1.2E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS01765 fcd0b9b5882a0c3c9f500b30daa3db70 307 Gene3D G3DSA:3.40.190.10 169 251 3.7E-20 T 14-09-2016 ccrud_RS01765 fcd0b9b5882a0c3c9f500b30daa3db70 307 SUPERFAMILY SSF46785 1 100 8.41E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS01765 fcd0b9b5882a0c3c9f500b30daa3db70 307 Gene3D G3DSA:1.10.10.10 1 68 1.8E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS01765 fcd0b9b5882a0c3c9f500b30daa3db70 307 Pfam PF03466 LysR substrate binding domain 79 282 1.1E-32 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS01765 fcd0b9b5882a0c3c9f500b30daa3db70 307 SUPERFAMILY SSF53850 80 286 1.41E-35 T 14-09-2016 ccrud_RS01765 fcd0b9b5882a0c3c9f500b30daa3db70 307 Gene3D G3DSA:3.40.190.10 82 168 4.5E-17 T 14-09-2016 ccrud_RS01765 fcd0b9b5882a0c3c9f500b30daa3db70 307 PANTHER PTHR30346 1 300 8.3E-51 T 14-09-2016 ccrud_RS07220 66fa8dfeb86e0a1a360c2f81426d42ea 375 Gene3D G3DSA:3.40.350.10 1 121 6.5E-14 T 14-09-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal ccrud_RS07220 66fa8dfeb86e0a1a360c2f81426d42ea 375 PANTHER PTHR10804 149 374 3.6E-70 T 14-09-2016 ccrud_RS07220 66fa8dfeb86e0a1a360c2f81426d42ea 375 PANTHER PTHR10804:SF86 149 374 3.6E-70 T 14-09-2016 ccrud_RS07220 66fa8dfeb86e0a1a360c2f81426d42ea 375 Pfam PF01321 Creatinase/Prolidase N-terminal domain 13 116 1.2E-9 T 14-09-2016 IPR000587 Creatinase, N-terminal GO:0016787 ccrud_RS07220 66fa8dfeb86e0a1a360c2f81426d42ea 375 Pfam PF00557 Metallopeptidase family M24 156 361 2.2E-56 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS07220 66fa8dfeb86e0a1a360c2f81426d42ea 375 SUPERFAMILY SSF55920 149 374 1.02E-71 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS07220 66fa8dfeb86e0a1a360c2f81426d42ea 375 Gene3D G3DSA:3.90.230.10 149 374 1.9E-69 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS07220 66fa8dfeb86e0a1a360c2f81426d42ea 375 SUPERFAMILY SSF53092 2 121 1.44E-14 T 14-09-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal ccrud_RS12375 fa3d07d5260ea77026ddda1108609ba1 335 Pfam PF00583 Acetyltransferase (GNAT) family 257 322 2.2E-12 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS12375 fa3d07d5260ea77026ddda1108609ba1 335 SUPERFAMILY SSF55729 65 330 1.48E-18 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS12375 fa3d07d5260ea77026ddda1108609ba1 335 Gene3D G3DSA:3.40.630.30 223 330 5.6E-17 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 SUPERFAMILY SSF102735 2 130 9.02E-35 T 14-09-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 258 416 5.3E-38 T 14-09-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 Gene3D G3DSA:3.30.70.1050 2 119 2.5E-35 T 14-09-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 TIGRFAM TIGR00115 tig: trigger factor 12 416 1.0E-109 T 14-09-2016 IPR005215 Trigger factor GO:0015031 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 SUPERFAMILY SSF109998 245 432 1.57E-35 T 14-09-2016 IPR027304 Trigger factor/SurA domain ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 Gene3D G3DSA:1.10.3120.10 214 392 5.3E-40 T 14-09-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 SUPERFAMILY SSF54534 134 244 2.27E-19 T 14-09-2016 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 221 2.3E-5 T 14-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 Gene3D G3DSA:3.10.50.40 156 213 6.5E-8 T 14-09-2016 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 Hamap MF_00303 Trigger factor [tig]. 1 424 17.57 T 14-09-2016 IPR005215 Trigger factor GO:0015031 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 PANTHER PTHR30560:SF3 1 436 2.4E-87 T 14-09-2016 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 PIRSF PIRSF003095 1 445 1.7E-111 T 14-09-2016 IPR005215 Trigger factor GO:0015031 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 Pfam PF05697 Bacterial trigger factor protein (TF) 2 144 2.1E-40 T 14-09-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 ccrud_RS10750 f0944cf639863e31f8d24519f1f29abd 449 PANTHER PTHR30560 1 436 2.4E-87 T 14-09-2016 ccrud_RS05590 14db6e1878f6ee380d2478c1ff56b54a 180 PANTHER PTHR24094 71 174 9.7E-23 T 14-09-2016 ccrud_RS05590 14db6e1878f6ee380d2478c1ff56b54a 180 PANTHER PTHR24094:SF10 71 174 9.7E-23 T 14-09-2016 ccrud_RS05590 14db6e1878f6ee380d2478c1ff56b54a 180 Pfam PF13395 HNH endonuclease 72 133 8.4E-10 T 14-09-2016 IPR003615 HNH nuclease ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 SMART SM00535 37 170 2.9E-48 T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 PANTHER PTHR11207 36 243 2.5E-60 T 14-09-2016 ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 SMART SM00358 177 243 2.7E-16 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 SUPERFAMILY SSF69065 24 179 3.66E-43 T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 Gene3D G3DSA:3.30.160.20 175 243 2.3E-21 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 29 242 1.7E-65 T 14-09-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 Pfam PF14622 Ribonuclease-III-like 37 159 9.8E-36 T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 ProSitePatterns PS00517 Ribonuclease III family signature. 59 67 - T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 SUPERFAMILY SSF54768 130 242 1.4E-22 T 14-09-2016 ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 Hamap MF_00104 Ribonuclease 3 [rnc]. 26 239 27.801 T 14-09-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 Pfam PF00035 Double-stranded RNA binding motif 177 242 2.3E-15 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain ccrud_RS09075 61649f9aa7d8015567b20040249efa64 247 Gene3D G3DSA:1.10.1520.10 24 164 3.2E-41 T 14-09-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 SUPERFAMILY SSF55136 123 279 1.15E-12 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 PANTHER PTHR11019 3 106 2.4E-30 T 14-09-2016 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 SMART SM00342 16 98 2.0E-23 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 53 94 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 PANTHER PTHR11019:SF56 3 106 2.4E-30 T 14-09-2016 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 SUPERFAMILY SSF46689 52 102 6.63E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 Pfam PF06445 GyrI-like small molecule binding domain 124 278 8.6E-14 T 14-09-2016 IPR029442 GyrI-like small molecule binding domain ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 Pfam PF12833 Helix-turn-helix domain 22 98 2.1E-16 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 Gene3D G3DSA:1.10.10.60 4 52 5.1E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 Gene3D G3DSA:1.10.10.60 53 109 1.0E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 67 82 5.7E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 82 98 5.7E-5 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 Gene3D G3DSA:3.20.80.10 110 258 2.8E-14 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain ccrud_RS01710 0a753bd66509414c8936f291665755c9 282 SMART SM00871 122 279 7.8E-19 T 14-09-2016 IPR010499 Bacterial transcription activator, effector binding ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 Gene3D G3DSA:3.30.70.360 182 297 8.3E-28 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 SUPERFAMILY SSF55031 183 296 5.53E-23 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 PANTHER PTHR11014:SF63 10 389 4.7E-126 T 14-09-2016 ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 Pfam PF07687 Peptidase dimerisation domain 187 281 3.7E-10 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 19 373 2.3E-97 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 Gene3D G3DSA:3.40.630.10 3 178 2.5E-84 T 14-09-2016 ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 Gene3D G3DSA:3.40.630.10 298 388 2.5E-84 T 14-09-2016 ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 PIRSF PIRSF005962 3 389 3.0E-102 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 Pfam PF01546 Peptidase family M20/M25/M40 74 382 2.5E-28 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 SUPERFAMILY SSF53187 6 197 6.58E-71 T 14-09-2016 ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 SUPERFAMILY SSF53187 298 384 6.58E-71 T 14-09-2016 ccrud_RS03415 309ed3bd41102c116ef0fcf1b1af1a51 394 PANTHER PTHR11014 10 389 4.7E-126 T 14-09-2016 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 134 145 - T 14-09-2016 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 Gene3D G3DSA:1.20.1440.90 279 404 4.6E-21 T 14-09-2016 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 919 18.784 T 14-09-2016 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 PANTHER PTHR30523 5 919 9.4E-304 T 14-09-2016 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 SUPERFAMILY SSF51621 6 919 1.54E-283 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 PANTHER PTHR30523:SF0 5 919 9.4E-304 T 14-09-2016 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 568 588 1.5E-57 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 610 639 1.5E-57 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 744 770 1.5E-57 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 192 208 1.5E-57 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 250 265 1.5E-57 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 133 146 1.5E-57 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 402 422 1.5E-57 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 Pfam PF00311 Phosphoenolpyruvate carboxylase 129 919 9.9E-258 T 14-09-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS07660 5327c5e4fd2f658c911a8edfe1c99245 919 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 570 582 - T 14-09-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 ccrud_RS11770 9bf82347ca83125cc36d8098ebde98ec 437 SUPERFAMILY SSF103473 19 435 3.66E-42 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS11770 9bf82347ca83125cc36d8098ebde98ec 437 PANTHER PTHR23519 1 432 9.1E-73 T 14-09-2016 ccrud_RS11770 9bf82347ca83125cc36d8098ebde98ec 437 Pfam PF11700 Vacuole effluxer Atg22 like 147 432 1.8E-36 T 14-09-2016 IPR024671 Autophagy-related protein 22-like ccrud_RS11770 9bf82347ca83125cc36d8098ebde98ec 437 Gene3D G3DSA:1.20.1250.20 32 230 3.3E-10 T 14-09-2016 ccrud_RS11770 9bf82347ca83125cc36d8098ebde98ec 437 Gene3D G3DSA:1.20.1250.20 254 435 1.5E-19 T 14-09-2016 ccrud_RS08020 06ac3d06ce878c9d1e6196e9a5d43856 126 SMART SM01323 1 83 4.4E-25 T 14-09-2016 IPR003849 Preprotein translocase YajC ccrud_RS08020 06ac3d06ce878c9d1e6196e9a5d43856 126 PANTHER PTHR33909 1 107 5.3E-15 T 14-09-2016 ccrud_RS08020 06ac3d06ce878c9d1e6196e9a5d43856 126 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 4 83 8.3E-16 T 14-09-2016 IPR003849 Preprotein translocase YajC ccrud_RS08020 06ac3d06ce878c9d1e6196e9a5d43856 126 PANTHER PTHR33909:SF1 1 107 5.3E-15 T 14-09-2016 ccrud_RS08020 06ac3d06ce878c9d1e6196e9a5d43856 126 Pfam PF02699 Preprotein translocase subunit 6 80 1.4E-16 T 14-09-2016 IPR003849 Preprotein translocase YajC ccrud_RS10875 7b1c014809be94c5018ea0b41d3540c6 281 SUPERFAMILY SSF161098 38 266 1.44E-42 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10875 7b1c014809be94c5018ea0b41d3540c6 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 69 266 3.6E-7 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10875 7b1c014809be94c5018ea0b41d3540c6 281 Gene3D G3DSA:1.10.3720.10 3 266 2.8E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10875 7b1c014809be94c5018ea0b41d3540c6 281 PANTHER PTHR30193 1 271 2.4E-45 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 Pfam PF00344 SecY translocase 73 423 7.2E-113 T 14-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 ProSitePatterns PS00755 Protein secY signature 1. 73 92 - T 14-09-2016 IPR030659 SecY conserved site ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PANTHER PTHR10906 1 440 1.6E-182 T 14-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 ProSitePatterns PS00756 Protein secY signature 2. 174 191 - T 14-09-2016 IPR030659 SecY conserved site ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 408 426 2.9E-98 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 17 35 2.9E-98 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 72 92 2.9E-98 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 268 287 2.9E-98 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 113 136 2.9E-98 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 181 204 2.9E-98 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 371 389 2.9E-98 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 155 180 2.9E-98 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PRINTS PR00303 Preprotein translocase SecY subunit signature 316 338 2.9E-98 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 Gene3D G3DSA:1.10.3370.10 3 440 7.0E-148 T 14-09-2016 IPR023201 SecY subunit domain ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 Hamap MF_01465 Protein translocase subunit SecY [secY]. 4 439 28.211 T 14-09-2016 IPR026593 Protein translocase subunit SecY ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 SUPERFAMILY SSF103491 3 430 1.83E-121 T 14-09-2016 IPR023201 SecY subunit domain ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PIRSF PIRSF004557 1 440 4.0E-121 T 14-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 PANTHER PTHR10906:SF2 1 440 1.6E-182 T 14-09-2016 ccrud_RS02830 948d7d3fe4d8c862b7c95354acbc1c25 440 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 14 435 3.6E-125 T 14-09-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 Gene3D G3DSA:3.40.50.300 280 314 1.7E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 Gene3D G3DSA:3.40.50.300 356 436 1.7E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 Pfam PF08148 DSHCT (NUC185) domain 759 925 1.2E-37 T 14-09-2016 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 SMART SM00490 347 433 5.2E-13 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 Pfam PF00270 DEAD/DEAH box helicase 25 171 2.7E-18 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 SMART SM01142 755 929 6.9E-58 T 14-09-2016 IPR012961 ATP-dependent RNA helicase Ski2, C-terminal ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 SUPERFAMILY SSF52540 32 173 6.68E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 SUPERFAMILY SSF52540 264 311 6.68E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 SUPERFAMILY SSF52540 353 446 6.68E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 SMART SM00487 18 202 2.1E-29 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 Gene3D G3DSA:3.40.50.300 20 198 1.2E-34 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07230 4549621245fdfb0adc0eeb0b5b81b8fd 929 Pfam PF00271 Helicase conserved C-terminal domain 356 433 4.2E-5 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 Pfam PF03449 Transcription elongation factor, N-terminal 8 75 2.3E-20 T 14-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 Gene3D G3DSA:3.10.50.30 83 166 2.7E-15 T 14-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 SUPERFAMILY SSF46557 6 75 5.62E-19 T 14-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 20 50 - T 14-09-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 PIRSF PIRSF006092 1 163 3.8E-30 T 14-09-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 84 160 1.1E-12 T 14-09-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 SUPERFAMILY SSF54534 83 160 1.02E-10 T 14-09-2016 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 PANTHER PTHR30437 1 170 2.5E-26 T 14-09-2016 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 Gene3D G3DSA:1.10.287.180 6 75 5.2E-22 T 14-09-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 124 140 - T 14-09-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 ccrud_RS04850 a0cf209c1baebc88f5670ddfb41c681f 174 Hamap MF_00105 Transcription elongation factor GreA [greA]. 5 160 24.436 T 14-09-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 ccrud_RS11725 bcd4b66f72632a77473ffd650a4255fb 369 PANTHER PTHR11751:SF401 1 369 5.1E-119 T 14-09-2016 ccrud_RS11725 bcd4b66f72632a77473ffd650a4255fb 369 Gene3D G3DSA:3.90.1150.10 236 368 7.9E-34 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS11725 bcd4b66f72632a77473ffd650a4255fb 369 PANTHER PTHR11751 1 369 5.1E-119 T 14-09-2016 ccrud_RS11725 bcd4b66f72632a77473ffd650a4255fb 369 SUPERFAMILY SSF53383 2 368 1.84E-94 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS11725 bcd4b66f72632a77473ffd650a4255fb 369 Pfam PF00155 Aminotransferase class I and II 17 356 5.3E-60 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ccrud_RS11725 bcd4b66f72632a77473ffd650a4255fb 369 Gene3D G3DSA:3.40.640.10 30 235 4.2E-59 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS13890 2d3422bf68602e5d20972d8174111a86 176 ProSitePatterns PS00893 Nudix box signature. 62 83 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ccrud_RS13890 2d3422bf68602e5d20972d8174111a86 176 PRINTS PR00502 NUDIX hydrolase family signature 57 71 6.0E-5 T 14-09-2016 IPR020476 NUDIX hydrolase ccrud_RS13890 2d3422bf68602e5d20972d8174111a86 176 PRINTS PR00502 NUDIX hydrolase family signature 71 86 6.0E-5 T 14-09-2016 IPR020476 NUDIX hydrolase ccrud_RS13890 2d3422bf68602e5d20972d8174111a86 176 Pfam PF00293 NUDIX domain 52 152 4.3E-21 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS13890 2d3422bf68602e5d20972d8174111a86 176 PANTHER PTHR22769:SF37 45 156 9.0E-25 T 14-09-2016 ccrud_RS13890 2d3422bf68602e5d20972d8174111a86 176 PANTHER PTHR22769 45 156 9.0E-25 T 14-09-2016 ccrud_RS13890 2d3422bf68602e5d20972d8174111a86 176 Gene3D G3DSA:3.90.79.10 43 161 1.9E-27 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS13890 2d3422bf68602e5d20972d8174111a86 176 SUPERFAMILY SSF55811 43 159 4.87E-28 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS03495 4124bab556fee11e974704b7bee5ba17 269 PANTHER PTHR12835 10 268 1.4E-40 T 14-09-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 ccrud_RS03495 4124bab556fee11e974704b7bee5ba17 269 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 30 265 2.5E-38 T 14-09-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 ccrud_RS03495 4124bab556fee11e974704b7bee5ba17 269 SUPERFAMILY SSF55681 21 210 2.2E-44 T 14-09-2016 ccrud_RS03495 4124bab556fee11e974704b7bee5ba17 269 Pfam PF03099 Biotin/lipoate A/B protein ligase family 66 158 3.6E-8 T 14-09-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 ccrud_RS03495 4124bab556fee11e974704b7bee5ba17 269 Gene3D G3DSA:3.30.930.10 20 215 1.0E-47 T 14-09-2016 ccrud_RS05155 0186cf952e5a63f971a2df88359c7000 279 Gene3D G3DSA:3.90.1170.20 5 128 7.4E-46 T 14-09-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 ccrud_RS05155 0186cf952e5a63f971a2df88359c7000 279 Gene3D G3DSA:3.20.20.70 129 268 2.7E-53 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS05155 0186cf952e5a63f971a2df88359c7000 279 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 108 277 1.2E-54 T 14-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 ccrud_RS05155 0186cf952e5a63f971a2df88359c7000 279 SUPERFAMILY SSF51690 108 278 8.63E-53 T 14-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 ccrud_RS05155 0186cf952e5a63f971a2df88359c7000 279 PIRSF PIRSF006250 1 279 2.2E-82 T 14-09-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD ccrud_RS05155 0186cf952e5a63f971a2df88359c7000 279 SUPERFAMILY SSF54675 5 107 1.92E-28 T 14-09-2016 ccrud_RS05155 0186cf952e5a63f971a2df88359c7000 279 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 9 278 1.9E-89 T 14-09-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 ccrud_RS05155 0186cf952e5a63f971a2df88359c7000 279 PANTHER PTHR32179 5 279 4.2E-107 T 14-09-2016 ccrud_RS05155 0186cf952e5a63f971a2df88359c7000 279 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 18 106 1.4E-22 T 14-09-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 ccrud_RS10635 a581f6dc6f606b5cf877e08680c05206 211 PANTHER PTHR13707 7 211 5.2E-121 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS10635 a581f6dc6f606b5cf877e08680c05206 211 SMART SM00882 6 203 3.1E-65 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS10635 a581f6dc6f606b5cf877e08680c05206 211 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 14-09-2016 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 ccrud_RS10635 a581f6dc6f606b5cf877e08680c05206 211 Pfam PF01144 Coenzyme A transferase 7 200 6.5E-38 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS10635 a581f6dc6f606b5cf877e08680c05206 211 Gene3D G3DSA:3.40.810.20 4 211 1.3E-88 T 14-09-2016 ccrud_RS10635 a581f6dc6f606b5cf877e08680c05206 211 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 210 2.9E-99 T 14-09-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 ccrud_RS10635 a581f6dc6f606b5cf877e08680c05206 211 SUPERFAMILY SSF100950 3 210 7.96E-70 T 14-09-2016 ccrud_RS02060 4706616ec1b60c01aa360622369f345f 222 Pfam PF01791 DeoC/LacD family aldolase 24 205 2.6E-14 T 14-09-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 ccrud_RS02060 4706616ec1b60c01aa360622369f345f 222 SUPERFAMILY SSF51569 3 219 1.05E-61 T 14-09-2016 ccrud_RS02060 4706616ec1b60c01aa360622369f345f 222 Hamap MF_00114 Deoxyribose-phosphate aldolase [deoC]. 6 221 29.494 T 14-09-2016 IPR028581 Deoxyribose-phosphate aldolase type I GO:0004139 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 ccrud_RS02060 4706616ec1b60c01aa360622369f345f 222 SMART SM01133 7 219 3.2E-61 T 14-09-2016 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 ccrud_RS02060 4706616ec1b60c01aa360622369f345f 222 PIRSF PIRSF001357 1 221 1.2E-57 T 14-09-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 ccrud_RS02060 4706616ec1b60c01aa360622369f345f 222 Gene3D G3DSA:3.20.20.70 3 220 1.4E-70 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS02060 4706616ec1b60c01aa360622369f345f 222 PANTHER PTHR10889 7 220 2.4E-62 T 14-09-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 ccrud_RS02060 4706616ec1b60c01aa360622369f345f 222 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 8 217 8.3E-56 T 14-09-2016 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|UniPathway: UPA00002 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 Pfam PF00069 Protein kinase domain 14 227 1.4E-53 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 SUPERFAMILY SSF54184 678 730 4.06E-5 T 14-09-2016 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 SUPERFAMILY SSF56112 11 311 1.58E-78 T 14-09-2016 IPR011009 Protein kinase-like domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 Gene3D G3DSA:3.30.200.20 5 79 2.6E-26 T 14-09-2016 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 SMART SM00740 542 609 2.8E-15 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 SMART SM00740 677 733 0.036 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 SMART SM00740 408 474 2.2E-6 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 SMART SM00740 475 541 7.3 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 SMART SM00740 611 676 3.1 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 133 145 - T 14-09-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 Pfam PF03793 PASTA domain 678 731 3.3E-9 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 Pfam PF03793 PASTA domain 612 672 6.5E-8 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 Pfam PF03793 PASTA domain 478 540 2.0E-7 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 Pfam PF03793 PASTA domain 413 474 1.3E-11 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 Pfam PF03793 PASTA domain 546 608 5.2E-13 T 14-09-2016 IPR005543 PASTA domain ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 Gene3D G3DSA:1.10.510.10 80 261 8.5E-51 T 14-09-2016 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 PANTHER PTHR24362 6 316 4.6E-94 T 14-09-2016 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 PANTHER PTHR24362 340 457 4.6E-94 T 14-09-2016 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 PANTHER PTHR24362:SF160 6 316 4.6E-94 T 14-09-2016 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 PANTHER PTHR24362:SF160 340 457 4.6E-94 T 14-09-2016 ccrud_RS09540 f28f2c3ab4c5fe397aeaf48fc3c92e5d 734 SMART SM00220 14 273 1.1E-61 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 PANTHER PTHR24031 285 569 4.0E-117 T 14-09-2016 ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 Gene3D G3DSA:3.40.50.300 292 449 3.8E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 PANTHER PTHR24031:SF122 285 569 4.0E-117 T 14-09-2016 ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 Gene3D G3DSA:3.40.50.300 32 236 7.3E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 PANTHER PTHR24031:SF122 45 269 4.0E-117 T 14-09-2016 ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 PANTHER PTHR24031 45 269 4.0E-117 T 14-09-2016 ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 Pfam PF00270 DEAD/DEAH box helicase 63 234 1.0E-18 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 SMART SM00490 323 405 6.3E-12 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 SMART SM00487 57 264 1.2E-21 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 TIGRFAM TIGR03817 DECH_helic: helicase/secretion neighborhood putative DEAH-box helicase 25 783 0.0 T 14-09-2016 IPR022307 DEAD/DEAH-box helicase, putative, actinobacteria ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 Pfam PF00271 Helicase conserved C-terminal domain 297 405 1.0E-10 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 Pfam PF09369 Domain of unknown function (DUF1998) 678 757 2.3E-18 T 14-09-2016 IPR018973 DEAD/DEAH-box helicase, putative ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 SUPERFAMILY SSF52540 268 414 1.11E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01580 c44c3e5f10f14d3ce9ed2ba14854aee5 788 SUPERFAMILY SSF52540 73 236 1.11E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01600 c3be68335825e74a3aaf5bfffd5ce701 237 Pfam PF07947 YhhN-like protein 53 233 1.2E-28 T 14-09-2016 IPR012506 YhhN-like GO:0016021 ccrud_RS01290 6c82ec860d3a6069f88b8c3eca158a94 329 Gene3D G3DSA:3.40.50.1820 114 290 4.4E-20 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS01290 6c82ec860d3a6069f88b8c3eca158a94 329 SUPERFAMILY SSF53474 126 309 5.34E-12 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 Pfam PF01025 GrpE 70 212 3.0E-27 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 Hamap MF_01151 Protein GrpE [grpE]. 13 214 15.761 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 ProSitePatterns PS01071 grpE protein signature. 171 212 - T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 PANTHER PTHR21237 55 217 8.3E-26 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 SUPERFAMILY SSF51064 161 214 5.89E-12 T 14-09-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 Gene3D G3DSA:3.90.20.20 76 158 2.9E-19 T 14-09-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 SUPERFAMILY SSF58014 76 157 1.06E-17 T 14-09-2016 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 Gene3D G3DSA:2.30.22.10 161 213 1.5E-15 T 14-09-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 PRINTS PR00773 GrpE protein signature 168 183 4.8E-23 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 PRINTS PR00773 GrpE protein signature 193 212 4.8E-23 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 PRINTS PR00773 GrpE protein signature 120 135 4.8E-23 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 ccrud_RS12605 5937fbcbe1817577221c7f3a0137755a 221 PRINTS PR00773 GrpE protein signature 92 108 4.8E-23 T 14-09-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 PRINTS PR00151 Porphobilinogen deaminase signature 69 88 3.4E-24 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 PRINTS PR00151 Porphobilinogen deaminase signature 135 152 3.4E-24 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 PRINTS PR00151 Porphobilinogen deaminase signature 222 239 3.4E-24 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 PRINTS PR00151 Porphobilinogen deaminase signature 116 133 3.4E-24 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 220 290 2.5E-13 T 14-09-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 SUPERFAMILY SSF53850 1 210 5.61E-67 T 14-09-2016 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 SUPERFAMILY SSF54782 213 299 1.57E-19 T 14-09-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 PANTHER PTHR11557 1 298 2.4E-109 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 Gene3D G3DSA:3.40.190.10 103 191 7.0E-35 T 14-09-2016 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 PIRSF PIRSF001438 1 302 6.9E-104 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 223 239 - T 14-09-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 Gene3D G3DSA:3.30.160.40 213 298 3.1E-21 T 14-09-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 Gene3D G3DSA:3.40.190.10 2 102 7.9E-29 T 14-09-2016 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 3 204 1.9E-62 T 14-09-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 2 292 34.221 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02180 d07086753b75100f98af38e6ca096a14 302 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 3 292 2.8E-99 T 14-09-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 1.4E-31 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.4E-31 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 120 138 1.4E-31 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 159 177 1.4E-31 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 268 290 1.4E-31 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 SUPERFAMILY SSF51905 205 339 1.54E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 SUPERFAMILY SSF51905 1 57 1.54E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 SUPERFAMILY SSF51905 85 176 1.54E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PANTHER PTHR22912 1 433 2.4E-147 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 323 429 3.1E-13 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.6E-50 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 383 398 2.6E-50 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 425 2.6E-50 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 123 132 2.6E-50 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 159 184 2.6E-50 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 2.6E-50 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 319 340 2.6E-50 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 2.6E-50 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 283 290 2.6E-50 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PIRSF PIRSF000350 1 425 1.6E-75 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 14-09-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 SUPERFAMILY SSF55424 322 431 1.15E-21 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 Gene3D G3DSA:3.30.390.30 312 431 4.1E-22 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 299 2.4E-54 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 PANTHER PTHR22912:SF145 1 433 2.4E-147 T 14-09-2016 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 Gene3D G3DSA:3.50.50.60 127 311 7.0E-55 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13610 cd2c6f8a325301fb9df29a76572b6ab5 433 Gene3D G3DSA:3.50.50.60 3 126 3.2E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07915 80e369d18a5a20b9970427c49fdc8091 399 SUPERFAMILY SSF56112 11 316 4.52E-23 T 14-09-2016 IPR011009 Protein kinase-like domain ccrud_RS07915 80e369d18a5a20b9970427c49fdc8091 399 Gene3D G3DSA:3.90.1200.10 115 289 3.1E-8 T 14-09-2016 ccrud_RS07915 80e369d18a5a20b9970427c49fdc8091 399 Pfam PF01636 Phosphotransferase enzyme family 112 279 3.9E-7 T 14-09-2016 IPR002575 Aminoglycoside phosphotransferase ccrud_RS13955 b4bde8ed70e8ee6b5e113722fd1ef7e3 47 Pfam PF00468 Ribosomal protein L34 5 47 1.7E-19 T 14-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS13955 b4bde8ed70e8ee6b5e113722fd1ef7e3 47 TIGRFAM TIGR01030 rpmH_bact: ribosomal protein bL34 5 47 2.3E-18 T 14-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS13955 b4bde8ed70e8ee6b5e113722fd1ef7e3 47 ProDom PD003101 RIBOSOMAL L34 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID L34 MITOCHONDRIAL PEPTIDE SEQUENCING 5 25 4.0E-5 T 14-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS13955 b4bde8ed70e8ee6b5e113722fd1ef7e3 47 PANTHER PTHR14503 5 47 2.6E-15 T 14-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS13955 b4bde8ed70e8ee6b5e113722fd1ef7e3 47 Hamap MF_00391 50S ribosomal protein L34 [rpmH]. 4 47 15.501 T 14-09-2016 IPR000271 Ribosomal protein L34 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS13955 b4bde8ed70e8ee6b5e113722fd1ef7e3 47 ProSitePatterns PS00784 Ribosomal protein L34 signature. 5 24 - T 14-09-2016 IPR020939 Ribosomal protein L34, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS06630 59aba626c4306a64047d54f299429254 310 Gene3D G3DSA:1.10.3720.10 76 306 2.4E-64 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS06630 59aba626c4306a64047d54f299429254 310 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 101 306 2.4E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS06630 59aba626c4306a64047d54f299429254 310 PANTHER PTHR30193 1 309 5.9E-155 T 14-09-2016 ccrud_RS06630 59aba626c4306a64047d54f299429254 310 PANTHER PTHR30193:SF31 1 309 5.9E-155 T 14-09-2016 ccrud_RS06630 59aba626c4306a64047d54f299429254 310 SUPERFAMILY SSF161098 70 298 2.49E-62 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PRINTS PR00410 Phenol hydroxylase reductase family signature 135 147 2.7E-23 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PRINTS PR00410 Phenol hydroxylase reductase family signature 195 204 2.7E-23 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PRINTS PR00410 Phenol hydroxylase reductase family signature 299 307 2.7E-23 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PRINTS PR00410 Phenol hydroxylase reductase family signature 152 159 2.7E-23 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PRINTS PR00410 Phenol hydroxylase reductase family signature 210 229 2.7E-23 T 14-09-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 Pfam PF00175 Oxidoreductase NAD-binding domain 211 313 4.5E-19 T 14-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 Gene3D G3DSA:3.40.50.80 204 333 3.6E-30 T 14-09-2016 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 85 5.2E-14 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 SUPERFAMILY SSF63380 75 204 1.12E-25 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 Pfam PF07729 FCD domain 378 500 5.2E-17 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 SUPERFAMILY SSF52343 191 329 6.42E-32 T 14-09-2016 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 210 229 1.7E-7 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 299 307 1.7E-7 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 135 145 1.7E-7 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 152 159 1.7E-7 T 14-09-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 SUPERFAMILY SSF48008 377 507 1.73E-17 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 SMART SM00895 375 501 1.4E-10 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 Gene3D G3DSA:3.10.20.30 2 94 1.2E-24 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 Pfam PF00970 Oxidoreductase FAD-binding domain 109 200 4.1E-19 T 14-09-2016 IPR008333 Oxidoreductase, FAD-binding domain ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 Gene3D G3DSA:2.40.30.10 105 197 1.2E-24 T 14-09-2016 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 Gene3D G3DSA:1.20.120.530 378 509 2.5E-16 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PANTHER PTHR19370:SF32 33 351 2.8E-49 T 14-09-2016 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 PANTHER PTHR19370 33 351 2.8E-49 T 14-09-2016 ccrud_RS10715 78914cdc1ed21e9861647d86e77f7ff0 512 SUPERFAMILY SSF54292 1 93 1.57E-24 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 Pfam PF04542 Sigma-70 region 2 261 330 1.8E-22 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 Gene3D G3DSA:1.10.601.10 174 218 2.8E-66 T 14-09-2016 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 Gene3D G3DSA:1.10.601.10 253 330 2.8E-66 T 14-09-2016 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 454 480 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 SUPERFAMILY SSF88659 334 407 5.23E-22 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 Gene3D G3DSA:1.10.10.10 334 385 7.6E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 PRINTS PR00046 Major sigma-70 factor signature 454 469 6.5E-29 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 PRINTS PR00046 Major sigma-70 factor signature 433 445 6.5E-29 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 PRINTS PR00046 Major sigma-70 factor signature 285 298 6.5E-29 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 PRINTS PR00046 Major sigma-70 factor signature 469 480 6.5E-29 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 PRINTS PR00046 Major sigma-70 factor signature 309 317 6.5E-29 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 Pfam PF04545 Sigma-70, region 4 429 482 7.6E-18 T 14-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 Pfam PF00140 Sigma-70 factor, region 1.2 186 219 6.1E-15 T 14-09-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 SUPERFAMILY SSF88946 183 331 8.19E-53 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 257 482 4.1E-35 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 SUPERFAMILY SSF88659 393 493 1.22E-25 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 83 494 31.988 T 14-09-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 PANTHER PTHR30603 38 494 2.2E-219 T 14-09-2016 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 257 493 6.0E-113 T 14-09-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 PANTHER PTHR30603:SF0 38 494 2.2E-219 T 14-09-2016 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 285 298 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 Pfam PF04539 Sigma-70 region 3 340 415 5.1E-27 T 14-09-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08235 674c345e8d26780bc1d22f5b60a2a7a6 494 Gene3D G3DSA:1.10.10.10 424 494 1.1E-30 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07045 7d85e06dec6ed6a17022897ba79a4beb 154 SUPERFAMILY SSF54637 33 146 4.13E-25 T 14-09-2016 IPR029069 HotDog domain ccrud_RS07045 7d85e06dec6ed6a17022897ba79a4beb 154 Gene3D G3DSA:3.10.129.10 32 153 2.7E-35 T 14-09-2016 IPR029069 HotDog domain ccrud_RS07045 7d85e06dec6ed6a17022897ba79a4beb 154 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 41 143 9.9E-18 T 14-09-2016 IPR003736 Phenylacetic acid degradation-related domain ccrud_RS07045 7d85e06dec6ed6a17022897ba79a4beb 154 PANTHER PTHR12418 42 134 2.5E-19 T 14-09-2016 ccrud_RS07045 7d85e06dec6ed6a17022897ba79a4beb 154 PANTHER PTHR12418:SF33 42 134 2.5E-19 T 14-09-2016 ccrud_RS07045 7d85e06dec6ed6a17022897ba79a4beb 154 Pfam PF03061 Thioesterase superfamily 69 138 1.5E-12 T 14-09-2016 IPR006683 Thioesterase domain ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 110 123 1.2E-34 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 230 247 1.2E-34 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 174 190 1.2E-34 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 147 165 1.2E-34 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 270 285 1.2E-34 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 151 158 - T 14-09-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 PANTHER PTHR10836:SF50 1 334 1.9E-200 T 14-09-2016 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 158 313 1.7E-66 T 14-09-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 SUPERFAMILY SSF55347 153 314 1.61E-69 T 14-09-2016 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 SUPERFAMILY SSF51735 1 179 9.87E-63 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 Gene3D G3DSA:3.30.360.10 162 315 6.6E-74 T 14-09-2016 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 PIRSF PIRSF000149 1 334 1.5E-131 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 SMART SM00846 3 153 2.4E-91 T 14-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 PANTHER PTHR10836 1 334 1.9E-200 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3 153 8.7E-61 T 14-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 325 5.8E-135 T 14-09-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS07675 48d999f5bc617045db580086ff9fc452 334 Gene3D G3DSA:3.40.50.720 3 161 2.9E-75 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 PANTHER PTHR11482 702 878 3.8E-92 T 14-09-2016 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 PANTHER PTHR11482 391 675 3.8E-92 T 14-09-2016 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 494 682 2.9E-22 T 14-09-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 Gene3D G3DSA:3.50.50.60 2 149 2.1E-7 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 Gene3D G3DSA:2.40.37.10 725 866 5.1E-33 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 Pfam PF13454 FAD-NAD(P)-binding 5 144 7.3E-22 T 14-09-2016 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 Gene3D G3DSA:3.20.20.10 483 690 1.0E-39 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 624 637 2.6E-7 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 505 523 2.6E-7 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 525 537 2.6E-7 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 743 762 2.6E-7 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 SUPERFAMILY SSF51905 2 194 2.59E-8 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 PANTHER PTHR11482:SF49 702 878 3.8E-92 T 14-09-2016 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 PANTHER PTHR11482:SF49 391 675 3.8E-92 T 14-09-2016 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 SUPERFAMILY SSF51419 715 756 1.89E-39 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 SUPERFAMILY SSF51419 482 682 1.89E-39 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 660 673 - T 14-09-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 SUPERFAMILY SSF50621 740 851 2.04E-10 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 ccrud_RS09345 4094f8e9beac6c297d031af36cc44758 878 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 505 523 - T 14-09-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 ccrud_RS00900 243cdb9d96cac01abcebda23db115419 572 SUPERFAMILY SSF161098 296 562 4.19E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS00900 243cdb9d96cac01abcebda23db115419 572 Gene3D G3DSA:1.10.3720.10 306 563 1.3E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS00900 243cdb9d96cac01abcebda23db115419 572 PANTHER PTHR30193 2 283 4.8E-38 T 14-09-2016 ccrud_RS00900 243cdb9d96cac01abcebda23db115419 572 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 77 271 6.3E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS00900 243cdb9d96cac01abcebda23db115419 572 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 383 558 1.7E-5 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS00900 243cdb9d96cac01abcebda23db115419 572 Gene3D G3DSA:1.10.3720.10 56 263 2.3E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS00900 243cdb9d96cac01abcebda23db115419 572 SUPERFAMILY SSF161098 3 267 1.96E-42 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS07800 239af98e7740930a4754b5484a2fa548 192 Gene3D G3DSA:3.40.50.2020 11 179 3.2E-46 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS07800 239af98e7740930a4754b5484a2fa548 192 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 8 185 36.08 T 14-09-2016 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 ccrud_RS07800 239af98e7740930a4754b5484a2fa548 192 PANTHER PTHR11608 5 187 5.6E-81 T 14-09-2016 ccrud_RS07800 239af98e7740930a4754b5484a2fa548 192 Pfam PF00156 Phosphoribosyl transferase domain 10 155 1.6E-21 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 ccrud_RS07800 239af98e7740930a4754b5484a2fa548 192 SUPERFAMILY SSF53271 11 179 1.7E-40 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 Pfam PF00119 ATP synthase A chain 46 261 1.6E-42 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 Gene3D G3DSA:1.20.120.220 95 266 2.3E-34 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 41 262 1.5E-33 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 PANTHER PTHR11410 26 270 6.1E-40 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 PRINTS PR00123 ATP synthase A subunit signature 248 263 1.1E-15 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 PRINTS PR00123 ATP synthase A subunit signature 188 210 1.1E-15 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 PRINTS PR00123 ATP synthase A subunit signature 103 119 1.1E-15 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 PANTHER PTHR11410:SF7 26 270 6.1E-40 T 14-09-2016 ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 Hamap MF_01393 ATP synthase subunit a [atpB]. 12 268 12.778 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 ccrud_RS05820 11e8c4b9727156bb7d4cea7173fdebba 270 SUPERFAMILY SSF81336 95 261 9.81E-33 T 14-09-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 PANTHER PTHR11364 2 293 1.6E-95 T 14-09-2016 ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 SUPERFAMILY SSF52821 166 291 2.88E-34 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 Pfam PF00581 Rhodanese-like domain 22 131 4.9E-13 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 Pfam PF00581 Rhodanese-like domain 172 281 7.0E-18 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 PANTHER PTHR11364:SF3 2 293 1.6E-95 T 14-09-2016 ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 ProSitePatterns PS00683 Rhodanese C-terminal signature. 270 280 - T 14-09-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 Gene3D G3DSA:3.40.250.10 165 292 2.8E-32 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 Gene3D G3DSA:3.40.250.10 14 150 6.1E-33 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 SMART SM00450 21 135 1.9E-17 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 SMART SM00450 161 286 6.1E-24 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 SUPERFAMILY SSF52821 14 153 9.17E-35 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS03455 1f8ce0cf1cd176de3b23a126119ba10b 296 ProSitePatterns PS00380 Rhodanese signature 1. 47 58 - T 14-09-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 ccrud_RS03595 77c5aa455c4c9d71463b0214b6804913 461 SUPERFAMILY SSF160631 140 194 7.59E-8 T 14-09-2016 ccrud_RS03595 77c5aa455c4c9d71463b0214b6804913 461 SUPERFAMILY SSF160631 234 288 7.59E-8 T 14-09-2016 ccrud_RS03595 77c5aa455c4c9d71463b0214b6804913 461 Pfam PF09346 SMI1 / KNR4 family (SUKH-1) 146 286 1.0E-15 T 14-09-2016 IPR018958 SMI1/KNR4-like domain ccrud_RS03595 77c5aa455c4c9d71463b0214b6804913 461 SMART SM00860 122 287 0.0011 T 14-09-2016 IPR018958 SMI1/KNR4-like domain ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 Pfam PF00580 UvrD/REP helicase N-terminal domain 172 296 1.6E-9 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 PANTHER PTHR11070:SF4 541 605 6.4E-102 T 14-09-2016 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 PANTHER PTHR11070 45 521 6.4E-102 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 PANTHER PTHR11070 541 605 6.4E-102 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 PANTHER PTHR11070 628 973 6.4E-102 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 Pfam PF13361 UvrD-like helicase C-terminal domain 308 653 7.6E-18 T 14-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 Gene3D G3DSA:3.40.50.300 30 164 1.3E-26 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 Gene3D G3DSA:3.40.50.300 205 295 1.3E-26 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 Pfam PF12705 PD-(D/E)XK nuclease superfamily 759 1006 2.0E-33 T 14-09-2016 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 PANTHER PTHR11070:SF4 45 521 6.4E-102 T 14-09-2016 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 Gene3D G3DSA:1.10.486.10 398 546 2.1E-4 T 14-09-2016 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 SUPERFAMILY SSF52540 629 672 1.63E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 SUPERFAMILY SSF52540 38 601 1.63E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 PANTHER PTHR11070:SF4 628 973 6.4E-102 T 14-09-2016 ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 Gene3D G3DSA:3.40.50.300 565 673 1.3E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03775 87aff6cb788df3533fbda03e028734a5 1016 Gene3D G3DSA:3.40.50.300 296 384 1.3E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03380 205cab244e3644d7e29e01236cd29459 431 SUPERFAMILY SSF56601 123 354 2.05E-50 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS03380 205cab244e3644d7e29e01236cd29459 431 SUPERFAMILY SSF56601 6 31 2.05E-50 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS03380 205cab244e3644d7e29e01236cd29459 431 PANTHER PTHR21581:SF1 101 358 5.1E-63 T 14-09-2016 ccrud_RS03380 205cab244e3644d7e29e01236cd29459 431 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 199 216 3.1E-9 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 ccrud_RS03380 205cab244e3644d7e29e01236cd29459 431 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 151 162 3.1E-9 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 ccrud_RS03380 205cab244e3644d7e29e01236cd29459 431 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 225 238 3.1E-9 T 14-09-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 ccrud_RS03380 205cab244e3644d7e29e01236cd29459 431 PANTHER PTHR21581 101 358 5.1E-63 T 14-09-2016 ccrud_RS03380 205cab244e3644d7e29e01236cd29459 431 Gene3D G3DSA:3.40.710.10 118 359 9.4E-64 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS03380 205cab244e3644d7e29e01236cd29459 431 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 118 342 1.2E-36 T 14-09-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 8 146 5.3E-46 T 14-09-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 TIGRFAM TIGR01771 L-LDH-NAD: L-lactate dehydrogenase 11 308 3.0E-128 T 14-09-2016 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|UniPathway: UPA00554 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 149 312 4.9E-31 T 14-09-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 Hamap MF_00488 L-lactate dehydrogenase [ldh]. 6 314 44.629 T 14-09-2016 IPR011304 L-lactate dehydrogenase GO:0004459|GO:0005737|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|UniPathway: UPA00554 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 ProSitePatterns PS00064 L-lactate dehydrogenase active site. 176 182 - T 14-09-2016 IPR018177 L-lactate dehydrogenase, active site GO:0004459|GO:0055114 KEGG: 00010+1.1.1.27|KEGG: 00270+1.1.1.27|KEGG: 00620+1.1.1.27|KEGG: 00640+1.1.1.27|MetaCyc: PWY-5481|MetaCyc: PWY-6901|UniPathway: UPA00554 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 Gene3D G3DSA:3.90.110.10 149 313 1.7E-58 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 PANTHER PTHR11540:SF3 7 312 1.9E-144 T 14-09-2016 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 PRINTS PR00086 L-lactate dehydrogenase signature 8 32 2.5E-47 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 PRINTS PR00086 L-lactate dehydrogenase signature 33 57 2.5E-47 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 PRINTS PR00086 L-lactate dehydrogenase signature 144 162 2.5E-47 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 PRINTS PR00086 L-lactate dehydrogenase signature 174 187 2.5E-47 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 PRINTS PR00086 L-lactate dehydrogenase signature 120 140 2.5E-47 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 PIRSF PIRSF000102 4 313 1.3E-105 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 SUPERFAMILY SSF56327 147 312 5.77E-54 T 14-09-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 SUPERFAMILY SSF51735 4 146 1.32E-52 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 Gene3D G3DSA:3.40.50.720 7 148 2.1E-52 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13270 4dab97a5603871944d3f862bf61f982d 314 PANTHER PTHR11540 7 312 1.9E-144 T 14-09-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PANTHER PTHR24321 6 253 4.6E-48 T 14-09-2016 ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 252 4.6E-62 T 14-09-2016 ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 SUPERFAMILY SSF51735 4 253 1.0E-76 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 Gene3D G3DSA:3.40.50.720 5 252 5.9E-79 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 9.0E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 9.0E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 9.0E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 9.0E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 9.0E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 9.0E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PANTHER PTHR24321:SF6 6 253 4.6E-48 T 14-09-2016 ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.4E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.4E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09055 741009dc5fc09cfb1e789dccf70c1fb4 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 1.4E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 PANTHER PTHR11911 152 270 5.7E-27 T 14-09-2016 ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 Pfam PF00027 Cyclic nucleotide-binding domain 36 119 7.0E-9 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 Pfam PF00571 CBS domain 217 271 2.5E-9 T 14-09-2016 IPR000644 CBS domain ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 Pfam PF00571 CBS domain 159 205 2.1E-9 T 14-09-2016 IPR000644 CBS domain ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 Gene3D G3DSA:3.10.580.10 151 268 7.1E-32 T 14-09-2016 ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 Gene3D G3DSA:2.60.120.10 3 126 1.3E-17 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 SMART SM00116 224 271 2.1E-7 T 14-09-2016 IPR000644 CBS domain ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 SMART SM00116 160 207 2.8E-9 T 14-09-2016 IPR000644 CBS domain ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 SUPERFAMILY SSF81301 267 394 3.76E-7 T 14-09-2016 ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 SUPERFAMILY SSF54631 153 271 5.56E-30 T 14-09-2016 ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 470 613 8.5E-43 T 14-09-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 SUPERFAMILY SSF51206 3 126 3.01E-20 T 14-09-2016 IPR018490 Cyclic nucleotide-binding-like ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 Pfam PF03445 Putative nucleotidyltransferase DUF294 298 433 2.0E-44 T 14-09-2016 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 ccrud_RS06160 6d226b96f82ca5a127656649596da265 618 SMART SM00100 17 131 1.5E-4 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 SUPERFAMILY SSF54999 5 100 3.66E-36 T 14-09-2016 IPR027486 Ribosomal protein S10 domain ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 6.1E-21 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 6.1E-21 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 6.1E-21 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 PANTHER PTHR11700 1 101 3.6E-49 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 14-09-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 8.0E-34 T 14-09-2016 IPR027486 Ribosomal protein S10 domain ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 Gene3D G3DSA:3.30.70.600 4 100 6.9E-42 T 14-09-2016 IPR027486 Ribosomal protein S10 domain ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 2.8E-45 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 101 24.533 T 14-09-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02600 7146469a0932ea77fa76cfad90503cb5 101 SMART SM01403 7 101 1.9E-54 T 14-09-2016 IPR027486 Ribosomal protein S10 domain ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 PANTHER PTHR23135 6 471 3.7E-116 T 14-09-2016 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 SUPERFAMILY SSF51984 13 100 2.62E-12 T 14-09-2016 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 Gene3D G3DSA:3.40.1190.10 100 316 2.4E-55 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 PANTHER PTHR23135:SF2 6 471 3.7E-116 T 14-09-2016 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 13 463 31.423 T 14-09-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 Pfam PF02875 Mur ligase family, glutamate ligase domain 320 387 4.8E-6 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 14 460 8.6E-113 T 14-09-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 Pfam PF08245 Mur ligase middle domain 123 251 6.1E-25 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 SUPERFAMILY SSF53623 117 315 7.06E-45 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 SUPERFAMILY SSF53244 320 460 4.26E-32 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 Gene3D G3DSA:3.90.190.20 320 459 6.3E-39 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09465 00154a21bfe29f2b5287da807d6615c2 472 Gene3D G3DSA:3.40.50.720 14 98 5.1E-15 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09060 89e45ac4cdeed69108fdeef08443766c 303 PANTHER PTHR35010:SF2 1 291 8.4E-81 T 14-09-2016 ccrud_RS09060 89e45ac4cdeed69108fdeef08443766c 303 Pfam PF13560 Helix-turn-helix domain 10 85 1.6E-12 T 14-09-2016 ccrud_RS09060 89e45ac4cdeed69108fdeef08443766c 303 PANTHER PTHR35010 1 291 8.4E-81 T 14-09-2016 ccrud_RS09060 89e45ac4cdeed69108fdeef08443766c 303 Gene3D G3DSA:1.10.260.40 4 81 1.1E-14 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS09060 89e45ac4cdeed69108fdeef08443766c 303 SUPERFAMILY SSF47413 31 78 8.3E-7 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS09060 89e45ac4cdeed69108fdeef08443766c 303 SMART SM00530 6 82 1.3E-5 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 ProSitePatterns PS00455 Putative AMP-binding domain signature. 152 163 - T 14-09-2016 IPR020845 AMP-binding, conserved site ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Gene3D G3DSA:2.160.10.10 1196 1301 2.1E-20 T 14-09-2016 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Pfam PF00550 Phosphopantetheine attachment site 508 569 5.3E-6 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Gene3D G3DSA:2.30.38.10 317 388 4.1E-12 T 14-09-2016 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Gene3D G3DSA:3.40.50.980 188 316 1.5E-34 T 14-09-2016 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Gene3D G3DSA:3.40.50.980 20 176 2.0E-29 T 14-09-2016 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 SUPERFAMILY SSF51161 697 807 3.88E-16 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 TIGRFAM TIGR02353 NRPS_term_dom: non-ribosomal peptide synthetase terminal domain of unknown function 598 1294 7.0E-155 T 14-09-2016 IPR012728 Non-ribosomal peptide synthetase, C-terminal ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Gene3D G3DSA:2.160.10.10 951 1059 6.1E-7 T 14-09-2016 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Gene3D G3DSA:1.10.1200.10 507 574 1.4E-9 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Gene3D G3DSA:3.30.300.30 394 494 3.4E-21 T 14-09-2016 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 SUPERFAMILY SSF51161 877 1043 4.57E-12 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 756 788 4.4E-4 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 SUPERFAMILY SSF51161 1168 1300 1.39E-17 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 PANTHER PTHR24095 16 482 1.7E-115 T 14-09-2016 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 SUPERFAMILY SSF47336 505 570 1.18E-7 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Gene3D G3DSA:2.160.10.10 663 804 1.4E-14 T 14-09-2016 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 SUPERFAMILY SSF56801 12 496 7.72E-105 T 14-09-2016 ccrud_RS01295 4bc27ee2e02fcefc0b475a7b03a0189c 1321 Pfam PF00501 AMP-binding enzyme 30 399 2.7E-60 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 ccrud_RS04015 8b812d2799cdb266c4c1f0efca78135e 213 Pfam PF11580 Protein of unknown function (DUF3239) 77 201 1.0E-51 T 14-09-2016 IPR021632 Protein of unknown function DUF3239 ccrud_RS04015 8b812d2799cdb266c4c1f0efca78135e 213 Gene3D G3DSA:2.40.410.10 76 213 1.3E-59 T 14-09-2016 IPR023124 DUF3239 domain ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 SMART SM00866 92 231 1.7E-29 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 Pfam PF07702 UTRA domain 94 229 2.3E-30 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 PANTHER PTHR11751 121 144 4.8E-21 T 14-09-2016 ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 PANTHER PTHR11751 10 74 4.8E-21 T 14-09-2016 ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 SUPERFAMILY SSF46785 8 73 1.56E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 Gene3D G3DSA:1.10.10.10 10 68 2.6E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 71 3.6E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 Gene3D G3DSA:3.40.1410.10 69 235 8.9E-42 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 SUPERFAMILY SSF64288 59 235 1.41E-41 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 1.2E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 1.2E-7 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS10245 f95946ffb82f19516d5c3faa2110b8ca 251 SMART SM00345 12 71 6.2E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS09455 7a95d395e855adfc7c2ec02e44b46105 363 SUPERFAMILY SSF53756 9 357 1.47E-96 T 14-09-2016 ccrud_RS09455 7a95d395e855adfc7c2ec02e44b46105 363 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 193 342 5.4E-35 T 14-09-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09455 7a95d395e855adfc7c2ec02e44b46105 363 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 10 358 30.925 T 14-09-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09455 7a95d395e855adfc7c2ec02e44b46105 363 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 6 354 8.3E-81 T 14-09-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09455 7a95d395e855adfc7c2ec02e44b46105 363 Gene3D G3DSA:3.40.50.2000 7 193 1.0E-56 T 14-09-2016 ccrud_RS09455 7a95d395e855adfc7c2ec02e44b46105 363 PANTHER PTHR21015:SF22 1 358 1.2E-94 T 14-09-2016 ccrud_RS09455 7a95d395e855adfc7c2ec02e44b46105 363 PANTHER PTHR21015 1 358 1.2E-94 T 14-09-2016 ccrud_RS09455 7a95d395e855adfc7c2ec02e44b46105 363 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 10 142 4.8E-37 T 14-09-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09455 7a95d395e855adfc7c2ec02e44b46105 363 Gene3D G3DSA:3.40.50.2000 194 357 1.1E-23 T 14-09-2016 ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 PANTHER PTHR11772:SF10 2 391 1.6E-141 T 14-09-2016 ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 PANTHER PTHR11772:SF10 468 631 1.6E-141 T 14-09-2016 ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 Pfam PF00733 Asparagine synthase 250 619 4.0E-106 T 14-09-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 SUPERFAMILY SSF56235 1 230 6.78E-56 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 PANTHER PTHR11772 2 391 1.6E-141 T 14-09-2016 ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 PANTHER PTHR11772 468 631 1.6E-141 T 14-09-2016 ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 SUPERFAMILY SSF52402 240 389 5.79E-82 T 14-09-2016 ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 SUPERFAMILY SSF52402 476 615 5.79E-82 T 14-09-2016 ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 Gene3D G3DSA:3.60.20.10 1 229 6.2E-71 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 Pfam PF13537 Glutamine amidotransferase domain 49 170 1.5E-39 T 14-09-2016 IPR017932 Glutamine amidotransferase type 2 domain ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 Gene3D G3DSA:3.40.50.620 472 619 9.5E-96 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 Gene3D G3DSA:3.40.50.620 230 386 9.5E-96 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 PIRSF PIRSF001589 1 636 5.4E-173 T 14-09-2016 ccrud_RS09640 f7c66e082c0d4e2ffc057ce4cb5e255c 640 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 556 2.3E-147 T 14-09-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 ccrud_RS07715 f50eb3872b21b3a2b90104a7288c5175 212 PANTHER PTHR21098 1 193 4.2E-98 T 14-09-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07715 f50eb3872b21b3a2b90104a7288c5175 212 Pfam PF00677 Lumazine binding domain 99 183 1.0E-20 T 14-09-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07715 f50eb3872b21b3a2b90104a7288c5175 212 Pfam PF00677 Lumazine binding domain 3 86 1.0E-21 T 14-09-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07715 f50eb3872b21b3a2b90104a7288c5175 212 SUPERFAMILY SSF63380 92 193 3.66E-31 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS07715 f50eb3872b21b3a2b90104a7288c5175 212 Gene3D G3DSA:2.40.30.20 104 193 4.7E-29 T 14-09-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS07715 f50eb3872b21b3a2b90104a7288c5175 212 Gene3D G3DSA:2.40.30.20 5 103 2.1E-33 T 14-09-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS07715 f50eb3872b21b3a2b90104a7288c5175 212 SUPERFAMILY SSF63380 1 89 9.35E-26 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS07715 f50eb3872b21b3a2b90104a7288c5175 212 PIRSF PIRSF000498 1 207 2.5E-70 T 14-09-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07715 f50eb3872b21b3a2b90104a7288c5175 212 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 193 1.0E-65 T 14-09-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 PANTHER PTHR11712:SF285 1 1035 4.3E-299 T 14-09-2016 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Gene3D G3DSA:3.40.47.10 370 534 6.6E-59 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Gene3D G3DSA:3.40.47.10 118 369 1.6E-93 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 PANTHER PTHR11712 1560 1565 4.3E-299 T 14-09-2016 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SMART SM00825 Beta-ketoacyl synthase 112 535 2.0E-193 T 14-09-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Pfam PF00550 Phosphopantetheine attachment site 19 84 7.1E-8 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Pfam PF00550 Phosphopantetheine attachment site 1142 1202 1.4E-7 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Gene3D G3DSA:3.40.50.1820 1545 1613 1.3E-32 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Gene3D G3DSA:3.40.50.1820 1348 1454 1.3E-32 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Gene3D G3DSA:1.10.1200.10 11 117 7.1E-13 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Pfam PF00698 Acyl transferase domain 639 964 3.4E-53 T 14-09-2016 IPR014043 Acyl transferase ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 641 947 2.2E-65 T 14-09-2016 IPR020801 Polyketide synthase, acyl transferase domain ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SUPERFAMILY SSF52151 835 927 2.12E-49 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SUPERFAMILY SSF52151 639 763 2.12E-49 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 PANTHER PTHR11712 1 1035 4.3E-299 T 14-09-2016 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SUPERFAMILY SSF53901 108 478 2.01E-90 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SUPERFAMILY SSF53901 510 530 2.01E-90 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SUPERFAMILY SSF47336 10 124 3.27E-16 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 270 286 - T 14-09-2016 IPR018201 Beta-ketoacyl synthase, active site ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Gene3D G3DSA:3.30.70.250 769 833 5.3E-4 T 14-09-2016 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 365 482 1.1E-42 T 14-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SUPERFAMILY SSF53474 1340 1614 1.25E-44 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 485 581 8.1E-13 T 14-09-2016 IPR032821 Ketoacyl-synthetase, C-terminal extension ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 PANTHER PTHR11712:SF285 1560 1565 4.3E-299 T 14-09-2016 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Gene3D G3DSA:3.40.366.10 834 960 4.1E-50 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Gene3D G3DSA:3.40.366.10 639 758 4.1E-50 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SMART SM00823 Phosphopantetheine attachment site 1140 1211 4.1E-4 T 14-09-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SMART SM00823 Phosphopantetheine attachment site 17 88 2.8E-5 T 14-09-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SUPERFAMILY SSF55048 769 833 3.66E-7 T 14-09-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SUPERFAMILY SSF47336 1136 1228 1.57E-13 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Gene3D G3DSA:1.10.1200.10 1136 1213 2.6E-11 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 111 357 6.0E-83 T 14-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 Pfam PF00975 Thioesterase domain 1361 1462 3.4E-19 T 14-09-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 ccrud_RS13070 4db9cade23b34d3680ebabf9d26701f0 1621 SMART SM00824 Thioesterase 1361 1610 0.0096 T 14-09-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 ccrud_RS10925 f48a8c7a53c4181ec6d635ac6a0621ac 464 Gene3D G3DSA:3.90.1150.10 352 455 2.1E-29 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS10925 f48a8c7a53c4181ec6d635ac6a0621ac 464 Gene3D G3DSA:3.90.1150.10 30 83 2.1E-29 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS10925 f48a8c7a53c4181ec6d635ac6a0621ac 464 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 263 302 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ccrud_RS10925 f48a8c7a53c4181ec6d635ac6a0621ac 464 Gene3D G3DSA:3.40.640.10 85 348 5.7E-73 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS10925 f48a8c7a53c4181ec6d635ac6a0621ac 464 PANTHER PTHR11986 26 460 7.8E-129 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ccrud_RS10925 f48a8c7a53c4181ec6d635ac6a0621ac 464 SUPERFAMILY SSF53383 34 451 4.45E-110 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS10925 f48a8c7a53c4181ec6d635ac6a0621ac 464 Pfam PF00202 Aminotransferase class-III 50 451 2.3E-95 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ccrud_RS02230 d58d557500b8667633f983b0a62d145a 347 Gene3D G3DSA:3.40.190.10 147 280 5.4E-33 T 14-09-2016 ccrud_RS02230 d58d557500b8667633f983b0a62d145a 347 Gene3D G3DSA:3.40.190.10 281 329 9.1E-49 T 14-09-2016 ccrud_RS02230 d58d557500b8667633f983b0a62d145a 347 Gene3D G3DSA:3.40.190.10 8 143 9.1E-49 T 14-09-2016 ccrud_RS02230 d58d557500b8667633f983b0a62d145a 347 PANTHER PTHR30006 1 329 3.3E-49 T 14-09-2016 ccrud_RS02230 d58d557500b8667633f983b0a62d145a 347 Pfam PF13343 Bacterial extracellular solute-binding protein 98 312 4.2E-29 T 14-09-2016 ccrud_RS02230 d58d557500b8667633f983b0a62d145a 347 PIRSF PIRSF002825 1 346 1.1E-62 T 14-09-2016 IPR026045 Ferric binding protein ccrud_RS02230 d58d557500b8667633f983b0a62d145a 347 SUPERFAMILY SSF53850 42 343 7.7E-63 T 14-09-2016 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 Gene3D G3DSA:3.30.230.10 264 435 1.9E-71 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 SUPERFAMILY SSF56719 438 679 3.4E-81 T 14-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 Gene3D G3DSA:3.40.50.670 448 665 2.6E-90 T 14-09-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 ProSitePatterns PS00177 DNA topoisomerase II signature. 466 474 - T 14-09-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 615 672 2.4E-25 T 14-09-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 404 418 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 514 523 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 653 669 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 286 304 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 356 372 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 637 649 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 418 438 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 8 18 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 180 195 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR01159 DNA gyrase subunit B signature 195 208 2.5E-64 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 Pfam PF00204 DNA gyrase B 265 434 3.0E-61 T 14-09-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR00418 DNA topoisomerase II family signature 530 546 3.5E-70 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR00418 DNA topoisomerase II family signature 548 565 3.5E-70 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR00418 DNA topoisomerase II family signature 312 325 3.5E-70 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR00418 DNA topoisomerase II family signature 568 580 3.5E-70 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR00418 DNA topoisomerase II family signature 37 52 3.5E-70 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR00418 DNA topoisomerase II family signature 72 85 3.5E-70 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR00418 DNA topoisomerase II family signature 616 632 3.5E-70 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR00418 DNA topoisomerase II family signature 464 478 3.5E-70 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PRINTS PR00418 DNA topoisomerase II family signature 114 128 3.5E-70 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 Gene3D G3DSA:3.30.565.10 8 213 3.8E-85 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 SMART SM00433 37 677 0.0 T 14-09-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 174 2.7E-24 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 SUPERFAMILY SSF54211 265 435 1.08E-57 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 5 684 91.295 T 14-09-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 SMART SM00387 33 175 4.2E-26 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 SUPERFAMILY SSF55874 7 211 2.49E-68 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 8 684 4.7E-290 T 14-09-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PANTHER PTHR10169 253 684 5.7E-271 T 14-09-2016 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 PANTHER PTHR10169 3 208 5.7E-271 T 14-09-2016 ccrud_RS00030 af3f62b7bf2d9c0231524999d6ae4081 684 Pfam PF01751 Toprim domain 463 574 1.6E-17 T 14-09-2016 IPR006171 Toprim domain ccrud_RS08140 c032a0613bfe07527cea5c33b35b8a58 501 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 28 489 2.5E-77 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS08140 c032a0613bfe07527cea5c33b35b8a58 501 Pfam PF00939 Sodium:sulfate symporter transmembrane region 21 490 5.3E-70 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS08140 c032a0613bfe07527cea5c33b35b8a58 501 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 445 461 - T 14-09-2016 IPR031312 Sodium/sulphate symporter, conserved site ccrud_RS08140 c032a0613bfe07527cea5c33b35b8a58 501 PANTHER PTHR10283 2 498 2.0E-95 T 14-09-2016 ccrud_RS08140 c032a0613bfe07527cea5c33b35b8a58 501 PANTHER PTHR10283:SF82 2 498 2.0E-95 T 14-09-2016 ccrud_RS04575 d74105de0a16dc082ca2a80802017ab7 166 Pfam PF03737 Demethylmenaquinone methyltransferase 11 159 1.1E-38 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein ccrud_RS04575 d74105de0a16dc082ca2a80802017ab7 166 SUPERFAMILY SSF89562 10 163 9.16E-43 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein ccrud_RS04575 d74105de0a16dc082ca2a80802017ab7 166 Gene3D G3DSA:3.50.30.40 10 163 2.6E-45 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein ccrud_RS04575 d74105de0a16dc082ca2a80802017ab7 166 PANTHER PTHR33254:SF1 8 161 3.6E-62 T 14-09-2016 ccrud_RS04575 d74105de0a16dc082ca2a80802017ab7 166 PANTHER PTHR33254 8 161 3.6E-62 T 14-09-2016 ccrud_RS04575 d74105de0a16dc082ca2a80802017ab7 166 TIGRFAM TIGR01935 NOT-MenG: RraA family 11 160 3.6E-56 T 14-09-2016 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 SMART SM00863 662 706 6.8E-19 T 14-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 SUPERFAMILY SSF55186 561 719 4.32E-44 T 14-09-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 SUPERFAMILY SSF55681 2 250 9.94E-85 T 14-09-2016 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 SUPERFAMILY SSF50447 463 561 3.18E-15 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 868 7.4E-257 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 662 706 5.9E-15 T 14-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 888 163.525 T 14-09-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 Pfam PF01411 tRNA synthetases class II (A) 5 564 1.5E-191 T 14-09-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 PANTHER PTHR11777:SF9 1 887 0.0 T 14-09-2016 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 PANTHER PTHR11777 1 887 0.0 T 14-09-2016 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 SUPERFAMILY SSF101353 251 447 5.36E-54 T 14-09-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 Gene3D G3DSA:3.30.930.10 2 246 3.8E-92 T 14-09-2016 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 281 297 2.0E-24 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 231 244 2.0E-24 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 198 209 2.0E-24 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 71 82 2.0E-24 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 ccrud_RS07905 6fcb51e7a1445ffe679f28a2f6f5929e 888 PRINTS PR00980 Alanyl-tRNA synthetase signature 305 318 2.0E-24 T 14-09-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 Pfam PF00953 Glycosyl transferase family 4 86 283 8.8E-33 T 14-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 46 58 1.1E-5 T 14-09-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 3 357 22.457 T 14-09-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 PANTHER PTHR22926:SF5 233 360 2.4E-125 T 14-09-2016 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 ProSitePatterns PS01348 MraY family signature 2. 186 197 - T 14-09-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 15 352 2.3E-89 T 14-09-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 ProSitePatterns PS01347 MraY family signature 1. 46 58 - T 14-09-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 PANTHER PTHR22926 233 360 2.4E-125 T 14-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 PANTHER PTHR22926:SF5 1 217 2.4E-125 T 14-09-2016 ccrud_RS09470 97a9e5a7b2a6c7168729ee87d2df3606 366 PANTHER PTHR22926 1 217 2.4E-125 T 14-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS10855 d7f68a790912589ee74ba61cdc605255 378 Gene3D G3DSA:2.60.120.10 251 341 3.1E-9 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS10855 d7f68a790912589ee74ba61cdc605255 378 Gene3D G3DSA:2.60.120.10 61 142 7.7E-8 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS10855 d7f68a790912589ee74ba61cdc605255 378 SUPERFAMILY SSF51182 27 148 9.47E-22 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS10855 d7f68a790912589ee74ba61cdc605255 378 SUPERFAMILY SSF51182 199 340 9.47E-22 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 178 5.8E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 5.8E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 5.8E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PANTHER PTHR24321:SF6 6 251 1.1E-43 T 14-09-2016 ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 1.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 178 1.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 250 7.4E-61 T 14-09-2016 ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 PANTHER PTHR24321 6 251 1.1E-43 T 14-09-2016 ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 Gene3D G3DSA:3.40.50.720 3 251 4.3E-74 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00420 5e64cc6f9f42649d6f4e574fb0fae84d 264 SUPERFAMILY SSF51735 6 250 1.76E-73 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07690 d9d92fc69972973a951e7579d203b73b 309 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 25 308 39.407 T 14-09-2016 IPR005337 RapZ-like family GO:0005524 ccrud_RS07690 d9d92fc69972973a951e7579d203b73b 309 Gene3D G3DSA:3.40.50.300 28 185 4.5E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07690 d9d92fc69972973a951e7579d203b73b 309 PANTHER PTHR30448:SF0 16 308 2.6E-126 T 14-09-2016 ccrud_RS07690 d9d92fc69972973a951e7579d203b73b 309 Pfam PF03668 P-loop ATPase protein family 28 308 1.2E-98 T 14-09-2016 IPR005337 RapZ-like family GO:0005524 ccrud_RS07690 d9d92fc69972973a951e7579d203b73b 309 SUPERFAMILY SSF52540 28 175 1.93E-12 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07690 d9d92fc69972973a951e7579d203b73b 309 PANTHER PTHR30448 16 308 2.6E-126 T 14-09-2016 ccrud_RS07690 d9d92fc69972973a951e7579d203b73b 309 PIRSF PIRSF005052 25 309 1.6E-116 T 14-09-2016 IPR005337 RapZ-like family GO:0005524 ccrud_RS12190 71ff4fd4992c48663a6e74bf6d93ec89 166 Pfam PF10936 Protein of unknown function DUF2617 3 163 5.3E-45 T 14-09-2016 IPR024486 Protein of unknown function DUF2617 ccrud_RS12190 71ff4fd4992c48663a6e74bf6d93ec89 166 ProDom PD339375 PRECURSOR SIGNAL SCO3656 SCO2458 CGL2705 MB2629 RV2598/MT2673.1 3 162 4.0E-77 T 14-09-2016 IPR024486 Protein of unknown function DUF2617 ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 PANTHER PTHR24220 18 388 6.5E-157 T 14-09-2016 ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 PANTHER PTHR24220:SF416 18 388 6.5E-157 T 14-09-2016 ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 Gene3D G3DSA:3.40.50.300 266 496 3.3E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 Gene3D G3DSA:3.40.50.300 14 237 8.5E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 SUPERFAMILY SSF52540 266 493 2.47E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 ProSitePatterns PS00211 ABC transporters family signature. 406 420 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 SUPERFAMILY SSF52540 15 237 6.13E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 Pfam PF00005 ABC transporter 33 181 3.2E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 Pfam PF00005 ABC transporter 280 433 2.2E-18 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 SMART SM00382 288 482 1.0E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06025 fff7df2e10b6833aabe67e80a3cd980d 524 SMART SM00382 41 229 2.3E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 SMART SM00382 346 556 8.7E-5 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 SMART SM00382 30 239 3.8E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 SUPERFAMILY SSF52540 307 507 7.58E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 Pfam PF12848 ABC transporter 227 300 7.0E-14 T 14-09-2016 IPR032781 ABC-transporter extension domain ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 Pfam PF00005 ABC transporter 21 188 4.1E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 Pfam PF00005 ABC transporter 338 471 1.1E-19 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 3 554 3.2E-262 T 14-09-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 PANTHER PTHR19211 2 556 0.0 T 14-09-2016 ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 Gene3D G3DSA:3.40.50.300 338 513 2.6E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 PANTHER PTHR19211:SF7 2 556 0.0 T 14-09-2016 ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 Gene3D G3DSA:3.40.50.300 7 102 1.5E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 Gene3D G3DSA:3.40.50.300 138 285 1.5E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 SUPERFAMILY SSF52540 8 241 7.08E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11025 31199d6c61a5f29fd8fa3a9ca12bc392 556 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS03915 224d2394ec931374215a3b525ad7d0cd 419 SUPERFAMILY SSF56349 77 401 6.18E-34 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ccrud_RS03915 224d2394ec931374215a3b525ad7d0cd 419 Pfam PF00589 Phage integrase family 205 400 1.1E-10 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ccrud_RS03915 224d2394ec931374215a3b525ad7d0cd 419 Gene3D G3DSA:1.10.150.130 77 186 1.6E-4 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal ccrud_RS03915 224d2394ec931374215a3b525ad7d0cd 419 PANTHER PTHR30349 97 259 6.3E-19 T 14-09-2016 ccrud_RS03915 224d2394ec931374215a3b525ad7d0cd 419 PANTHER PTHR30349 276 416 6.3E-19 T 14-09-2016 ccrud_RS03915 224d2394ec931374215a3b525ad7d0cd 419 Gene3D G3DSA:1.10.443.10 204 404 8.1E-23 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 ccrud_RS03915 224d2394ec931374215a3b525ad7d0cd 419 PANTHER PTHR30349:SF20 97 259 6.3E-19 T 14-09-2016 ccrud_RS03915 224d2394ec931374215a3b525ad7d0cd 419 PANTHER PTHR30349:SF20 276 416 6.3E-19 T 14-09-2016 ccrud_RS00640 7b5343e53df0d72697584dccc15241da 304 Pfam PF02661 Fic/DOC family 139 239 5.6E-13 T 14-09-2016 IPR003812 Fido domain ccrud_RS00640 7b5343e53df0d72697584dccc15241da 304 PANTHER PTHR13504 45 301 8.5E-38 T 14-09-2016 ccrud_RS00640 7b5343e53df0d72697584dccc15241da 304 Gene3D G3DSA:1.10.3290.10 65 301 6.6E-39 T 14-09-2016 IPR003812 Fido domain ccrud_RS00640 7b5343e53df0d72697584dccc15241da 304 SUPERFAMILY SSF140931 133 301 1.31E-21 T 14-09-2016 IPR003812 Fido domain ccrud_RS00640 7b5343e53df0d72697584dccc15241da 304 PANTHER PTHR13504:SF31 45 301 8.5E-38 T 14-09-2016 ccrud_RS00630 a162826a9ce24ff32f0b84690c7b4333 279 Gene3D G3DSA:3.40.50.620 4 174 2.9E-72 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS00630 a162826a9ce24ff32f0b84690c7b4333 279 Gene3D G3DSA:3.30.1300.10 175 279 1.8E-26 T 14-09-2016 ccrud_RS00630 a162826a9ce24ff32f0b84690c7b4333 279 PANTHER PTHR21299:SF1 1 279 5.3E-115 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 ccrud_RS00630 a162826a9ce24ff32f0b84690c7b4333 279 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 3 277 1.5E-88 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 ccrud_RS00630 a162826a9ce24ff32f0b84690c7b4333 279 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 38.257 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 ccrud_RS00630 a162826a9ce24ff32f0b84690c7b4333 279 SUPERFAMILY SSF52374 6 279 1.69E-96 T 14-09-2016 ccrud_RS00630 a162826a9ce24ff32f0b84690c7b4333 279 PANTHER PTHR21299 1 279 5.3E-115 T 14-09-2016 ccrud_RS00630 a162826a9ce24ff32f0b84690c7b4333 279 Pfam PF02569 Pantoate-beta-alanine ligase 14 277 1.2E-96 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 ccrud_RS08320 8fd79db2d80fd028a9925631cc0b0942 150 PANTHER PTHR30455:SF2 2 150 2.1E-56 T 14-09-2016 ccrud_RS08320 8fd79db2d80fd028a9925631cc0b0942 150 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 150 75.009 T 14-09-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 ccrud_RS08320 8fd79db2d80fd028a9925631cc0b0942 150 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 142 9.4E-48 T 14-09-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 ccrud_RS08320 8fd79db2d80fd028a9925631cc0b0942 150 Pfam PF03477 ATP cone domain 47 132 2.2E-16 T 14-09-2016 IPR005144 ATP-cone domain ccrud_RS08320 8fd79db2d80fd028a9925631cc0b0942 150 PANTHER PTHR30455 2 150 2.1E-56 T 14-09-2016 ccrud_RS12170 2c27f7768af70b659dbc8057f2f7d1e8 158 SUPERFAMILY SSF50324 3 157 2.35E-55 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 ccrud_RS12170 2c27f7768af70b659dbc8057f2f7d1e8 158 Pfam PF00719 Inorganic pyrophosphatase 5 157 4.7E-51 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 ccrud_RS12170 2c27f7768af70b659dbc8057f2f7d1e8 158 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 1 157 32.684 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 ccrud_RS12170 2c27f7768af70b659dbc8057f2f7d1e8 158 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 52 58 - T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 ccrud_RS12170 2c27f7768af70b659dbc8057f2f7d1e8 158 Gene3D G3DSA:3.90.80.10 3 157 9.6E-52 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 ccrud_RS12170 2c27f7768af70b659dbc8057f2f7d1e8 158 PANTHER PTHR10286 5 158 2.6E-56 T 14-09-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 ccrud_RS02880 cdb2b7cb362d110e193f69d68c9f0b8c 72 SUPERFAMILY SSF50249 1 71 8.36E-28 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS02880 cdb2b7cb362d110e193f69d68c9f0b8c 72 Gene3D G3DSA:2.40.50.140 1 72 4.6E-40 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS02880 cdb2b7cb362d110e193f69d68c9f0b8c 72 PANTHER PTHR33370 1 72 4.2E-47 T 14-09-2016 ccrud_RS02880 cdb2b7cb362d110e193f69d68c9f0b8c 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 27.365 T 14-09-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 ccrud_RS02880 cdb2b7cb362d110e193f69d68c9f0b8c 72 Pfam PF01176 Translation initiation factor 1A / IF-1 7 70 2.3E-29 T 14-09-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 ccrud_RS02880 cdb2b7cb362d110e193f69d68c9f0b8c 72 SMART SM00316 4 72 0.0038 T 14-09-2016 IPR022967 RNA-binding domain, S1 ccrud_RS02880 cdb2b7cb362d110e193f69d68c9f0b8c 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 71 1.7E-38 T 14-09-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 ccrud_RS03435 8596889f6416f67752932de1659bfd92 498 SUPERFAMILY SSF103378 19 481 8.76E-120 T 14-09-2016 IPR005656 MmgE/PrpD GO:0016829 ccrud_RS03435 8596889f6416f67752932de1659bfd92 498 PANTHER PTHR16943:SF19 1 492 1.3E-127 T 14-09-2016 ccrud_RS03435 8596889f6416f67752932de1659bfd92 498 Pfam PF03972 MmgE/PrpD family 19 473 3.5E-123 T 14-09-2016 IPR005656 MmgE/PrpD GO:0016829 ccrud_RS03435 8596889f6416f67752932de1659bfd92 498 Gene3D G3DSA:3.30.1330.120 282 424 3.5E-44 T 14-09-2016 ccrud_RS03435 8596889f6416f67752932de1659bfd92 498 PANTHER PTHR16943 1 492 1.3E-127 T 14-09-2016 IPR005656 MmgE/PrpD GO:0016829 ccrud_RS08040 2e6151bd01019fafc0f272550254fe12 251 Pfam PF01709 Transcriptional regulator 5 238 6.7E-91 T 14-09-2016 IPR002876 Transcriptional regulator TACO1-like ccrud_RS08040 2e6151bd01019fafc0f272550254fe12 251 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 240 34.605 T 14-09-2016 IPR002876 Transcriptional regulator TACO1-like ccrud_RS08040 2e6151bd01019fafc0f272550254fe12 251 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 238 1.7E-96 T 14-09-2016 IPR002876 Transcriptional regulator TACO1-like ccrud_RS08040 2e6151bd01019fafc0f272550254fe12 251 Gene3D G3DSA:1.10.10.200 1 79 6.1E-33 T 14-09-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like ccrud_RS08040 2e6151bd01019fafc0f272550254fe12 251 PANTHER PTHR12532 1 242 1.9E-107 T 14-09-2016 IPR002876 Transcriptional regulator TACO1-like ccrud_RS08040 2e6151bd01019fafc0f272550254fe12 251 Gene3D G3DSA:3.30.70.980 138 204 2.0E-24 T 14-09-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 ccrud_RS08040 2e6151bd01019fafc0f272550254fe12 251 SUPERFAMILY SSF75625 3 247 6.28E-91 T 14-09-2016 IPR029072 YebC-like ccrud_RS08040 2e6151bd01019fafc0f272550254fe12 251 Gene3D G3DSA:3.30.1270.10 85 137 1.3E-40 T 14-09-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 ccrud_RS08040 2e6151bd01019fafc0f272550254fe12 251 Gene3D G3DSA:3.30.1270.10 213 248 1.3E-40 T 14-09-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 ccrud_RS07265 2fa388453b2be04b6fa65c0fb982b503 514 PANTHER PTHR42307:SF2 1 511 1.3E-130 T 14-09-2016 ccrud_RS07265 2fa388453b2be04b6fa65c0fb982b503 514 TIGRFAM TIGR03688 pupylate_PafA2: proteasome accessory factor PafA2 3 489 1.1E-233 T 14-09-2016 IPR022366 Pup deamidase GO:0008233|GO:0016811 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00997 ccrud_RS07265 2fa388453b2be04b6fa65c0fb982b503 514 PIRSF PIRSF018077 8 500 1.2E-198 T 14-09-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 ccrud_RS07265 2fa388453b2be04b6fa65c0fb982b503 514 PANTHER PTHR42307 1 511 1.3E-130 T 14-09-2016 ccrud_RS07265 2fa388453b2be04b6fa65c0fb982b503 514 Pfam PF03136 Pup-ligase protein 3 458 2.0E-163 T 14-09-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 ccrud_RS04330 fc7707fc3b3de7548a7bf0c1f4557675 195 SMART SM00852 45 186 5.6E-12 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS04330 fc7707fc3b3de7548a7bf0c1f4557675 195 PANTHER PTHR10192:SF4 34 193 3.7E-19 T 14-09-2016 ccrud_RS04330 fc7707fc3b3de7548a7bf0c1f4557675 195 Gene3D G3DSA:3.40.980.10 38 192 2.8E-32 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS04330 fc7707fc3b3de7548a7bf0c1f4557675 195 PANTHER PTHR10192 34 193 3.7E-19 T 14-09-2016 ccrud_RS04330 fc7707fc3b3de7548a7bf0c1f4557675 195 SUPERFAMILY SSF53218 39 191 1.44E-27 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS04330 fc7707fc3b3de7548a7bf0c1f4557675 195 Pfam PF00994 Probable molybdopterin binding domain 46 182 2.2E-18 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS10475 f5424c5ffc016acce9fd50fbaca6d232 304 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 177 199 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site ccrud_RS10475 f5424c5ffc016acce9fd50fbaca6d232 304 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 107 267 1.6E-49 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 ccrud_RS10475 f5424c5ffc016acce9fd50fbaca6d232 304 SUPERFAMILY SSF51735 86 267 1.24E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10475 f5424c5ffc016acce9fd50fbaca6d232 304 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 206 222 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site ccrud_RS10475 f5424c5ffc016acce9fd50fbaca6d232 304 Gene3D G3DSA:3.40.50.720 20 91 1.8E-8 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10475 f5424c5ffc016acce9fd50fbaca6d232 304 PANTHER PTHR10996 23 299 1.0E-64 T 14-09-2016 ccrud_RS10475 f5424c5ffc016acce9fd50fbaca6d232 304 SUPERFAMILY SSF52283 25 96 7.48E-6 T 14-09-2016 ccrud_RS10475 f5424c5ffc016acce9fd50fbaca6d232 304 Gene3D G3DSA:3.40.50.720 92 270 2.3E-53 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04040 57a78deb7cf3a3bcd8370b509487b5ca 127 PANTHER PTHR11544:SF43 2 122 7.6E-18 T 14-09-2016 ccrud_RS04040 57a78deb7cf3a3bcd8370b509487b5ca 127 Pfam PF00313 'Cold-shock' DNA-binding domain 4 63 8.4E-13 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS04040 57a78deb7cf3a3bcd8370b509487b5ca 127 SUPERFAMILY SSF50249 3 65 1.89E-14 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS04040 57a78deb7cf3a3bcd8370b509487b5ca 127 SMART SM00357 3 65 1.1E-9 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 ccrud_RS04040 57a78deb7cf3a3bcd8370b509487b5ca 127 PANTHER PTHR11544 2 122 7.6E-18 T 14-09-2016 ccrud_RS04040 57a78deb7cf3a3bcd8370b509487b5ca 127 Gene3D G3DSA:2.40.50.140 4 64 2.6E-18 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS04040 57a78deb7cf3a3bcd8370b509487b5ca 127 PRINTS PR00050 Cold shock protein signature 24 33 9.4E-11 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS04040 57a78deb7cf3a3bcd8370b509487b5ca 127 PRINTS PR00050 Cold shock protein signature 38 56 9.4E-11 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS04040 57a78deb7cf3a3bcd8370b509487b5ca 127 PRINTS PR00050 Cold shock protein signature 4 19 9.4E-11 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 350 369 - T 14-09-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 247 391 1.5E-27 T 14-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 Gene3D G3DSA:1.10.540.10 5 133 1.1E-11 T 14-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 PANTHER PTHR10909:SF280 10 398 1.1E-136 T 14-09-2016 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 SUPERFAMILY SSF47203 246 395 6.44E-37 T 14-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 PANTHER PTHR10909 10 398 1.1E-136 T 14-09-2016 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 SUPERFAMILY SSF56645 14 244 1.96E-41 T 14-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 24 132 5.2E-6 T 14-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 Gene3D G3DSA:1.20.140.10 233 393 1.3E-37 T 14-09-2016 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 Gene3D G3DSA:2.40.110.10 138 232 3.2E-25 T 14-09-2016 ccrud_RS01485 513ff01a691eb626942a8bef8beb087e 398 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 138 232 1.2E-19 T 14-09-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 ccrud_RS03060 80ab6d10aeed4cd6313e0eb84d3f104a 188 SUPERFAMILY SSF88946 5 113 1.2E-17 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03060 80ab6d10aeed4cd6313e0eb84d3f104a 188 SUPERFAMILY SSF88659 109 184 5.42E-15 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03060 80ab6d10aeed4cd6313e0eb84d3f104a 188 Pfam PF04542 Sigma-70 region 2 31 94 2.2E-10 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03060 80ab6d10aeed4cd6313e0eb84d3f104a 188 Gene3D G3DSA:1.10.10.10 126 184 9.1E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03060 80ab6d10aeed4cd6313e0eb84d3f104a 188 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 22 181 1.5E-23 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03060 80ab6d10aeed4cd6313e0eb84d3f104a 188 Gene3D G3DSA:1.10.1740.10 5 117 1.1E-18 T 14-09-2016 ccrud_RS03060 80ab6d10aeed4cd6313e0eb84d3f104a 188 Pfam PF08281 Sigma-70, region 4 126 178 8.0E-11 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS03060 80ab6d10aeed4cd6313e0eb84d3f104a 188 PANTHER PTHR30173:SF3 1 187 3.4E-54 T 14-09-2016 ccrud_RS03060 80ab6d10aeed4cd6313e0eb84d3f104a 188 PANTHER PTHR30173 1 187 3.4E-54 T 14-09-2016 ccrud_RS09285 5c2f52c2de237b29d4556c56b8540f33 126 SMART SM00363 9 77 4.1E-5 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS09285 5c2f52c2de237b29d4556c56b8540f33 126 PIRSF PIRSF016821 7 126 1.9E-48 T 14-09-2016 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 ccrud_RS09285 5c2f52c2de237b29d4556c56b8540f33 126 Pfam PF01479 S4 domain 9 55 6.8E-10 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS09285 5c2f52c2de237b29d4556c56b8540f33 126 SUPERFAMILY SSF55174 7 91 3.27E-22 T 14-09-2016 ccrud_RS09285 5c2f52c2de237b29d4556c56b8540f33 126 Gene3D G3DSA:3.10.290.10 7 103 4.3E-29 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS08475 7e868d7e41fed170b847fe7678326fbf 203 PANTHER PTHR33514:SF4 1 200 2.2E-19 T 14-09-2016 ccrud_RS08475 7e868d7e41fed170b847fe7678326fbf 203 PANTHER PTHR33514 1 200 2.2E-19 T 14-09-2016 ccrud_RS08475 7e868d7e41fed170b847fe7678326fbf 203 Pfam PF02361 Cobalt transport protein 26 200 2.1E-13 T 14-09-2016 IPR003339 ABC/ECF transporter, transmembrane component ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 Gene3D G3DSA:3.50.50.60 3 145 3.7E-30 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 SUPERFAMILY SSF55424 349 463 3.09E-28 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PANTHER PTHR22912 140 462 4.9E-144 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PANTHER PTHR22912 1 119 4.9E-144 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PIRSF PIRSF000350 1 466 7.9E-80 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 Gene3D G3DSA:3.50.50.60 146 339 1.0E-49 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 3.6E-32 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 142 160 3.6E-32 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 181 199 3.6E-32 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 282 3.6E-32 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 295 317 3.6E-32 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 SUPERFAMILY SSF51905 3 103 5.4E-51 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 SUPERFAMILY SSF51905 130 339 5.4E-51 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 310 317 2.6E-49 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.6E-49 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 36 51 2.6E-49 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 453 2.6E-49 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 154 2.6E-49 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 267 281 2.6E-49 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 426 2.6E-49 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 181 206 2.6E-49 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 346 367 2.6E-49 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 330 8.5E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 350 458 2.8E-24 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PANTHER PTHR22912:SF20 1 119 4.9E-144 T 14-09-2016 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 Gene3D G3DSA:3.30.390.30 345 462 3.0E-31 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS03420 0fd761fb0b03524a93a1b599dd8bb901 469 PANTHER PTHR22912:SF20 140 462 4.9E-144 T 14-09-2016 ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 SUPERFAMILY SSF56645 24 219 1.44E-26 T 14-09-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 PANTHER PTHR10909:SF279 39 364 2.8E-56 T 14-09-2016 ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 Gene3D G3DSA:1.10.540.10 28 126 6.6E-24 T 14-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 PIRSF PIRSF016578 12 396 2.1E-96 T 14-09-2016 ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 244 375 2.0E-22 T 14-09-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 PANTHER PTHR10909 39 364 2.8E-56 T 14-09-2016 ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 29 107 6.7E-6 T 14-09-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 Gene3D G3DSA:2.40.110.10 131 216 1.2E-21 T 14-09-2016 ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 SUPERFAMILY SSF47203 237 374 3.43E-9 T 14-09-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 ccrud_RS12915 ad3e01ba937067a68c22d6c30a488a70 397 Gene3D G3DSA:1.20.140.10 217 392 1.4E-32 T 14-09-2016 ccrud_RS04860 1cde5385958a48dd078ab4915bd99be2 291 SUPERFAMILY SSF102588 3 287 3.4E-73 T 14-09-2016 IPR024078 Putative deacetylase LmbE-like domain ccrud_RS04860 1cde5385958a48dd078ab4915bd99be2 291 Gene3D G3DSA:3.40.50.10320 3 288 2.2E-83 T 14-09-2016 IPR024078 Putative deacetylase LmbE-like domain ccrud_RS04860 1cde5385958a48dd078ab4915bd99be2 291 PANTHER PTHR12993 4 243 1.1E-115 T 14-09-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related ccrud_RS04860 1cde5385958a48dd078ab4915bd99be2 291 PANTHER PTHR12993:SF12 4 243 1.1E-115 T 14-09-2016 ccrud_RS04860 1cde5385958a48dd078ab4915bd99be2 291 Pfam PF02585 GlcNAc-PI de-N-acetylase 7 152 4.7E-27 T 14-09-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related ccrud_RS04860 1cde5385958a48dd078ab4915bd99be2 291 Hamap MF_01482 Mycothiol S-conjugate amidase [mca]. 4 287 62.368 T 14-09-2016 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 KEGG: 00311+3.5.1.11 ccrud_RS04860 1cde5385958a48dd078ab4915bd99be2 291 TIGRFAM TIGR03446 mycothiol_Mca: mycothiol conjugate amidase Mca 4 286 2.1E-153 T 14-09-2016 IPR017811 Mycothiol S-conjugate amidase Mca GO:0010126 KEGG: 00311+3.5.1.11 ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 26 267 3.2E-60 T 14-09-2016 ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 103 114 8.9E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 164 8.9E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 176 195 8.9E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 163 191 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 Gene3D G3DSA:3.40.50.720 16 267 2.5E-77 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PANTHER PTHR24322 176 208 3.2E-44 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PANTHER PTHR24322 62 160 3.2E-44 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PANTHER PTHR24322 24 43 3.2E-44 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 103 114 3.0E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 166 3.0E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 195 3.0E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 214 3.0E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 21 38 3.0E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 232 252 3.0E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00430 6d5e32a57d3f4372020204ee0d73ccc3 271 SUPERFAMILY SSF51735 19 268 5.14E-75 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PRINTS PR00083 Histidinol dehydrogenase signature 325 350 4.5E-61 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PRINTS PR00083 Histidinol dehydrogenase signature 205 230 4.5E-61 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PRINTS PR00083 Histidinol dehydrogenase signature 234 255 4.5E-61 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PRINTS PR00083 Histidinol dehydrogenase signature 38 62 4.5E-61 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PRINTS PR00083 Histidinol dehydrogenase signature 367 385 4.5E-61 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PRINTS PR00083 Histidinol dehydrogenase signature 256 275 4.5E-61 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PRINTS PR00083 Histidinol dehydrogenase signature 175 201 4.5E-61 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PRINTS PR00083 Histidinol dehydrogenase signature 112 139 4.5E-61 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PANTHER PTHR21256 28 436 3.5E-141 T 14-09-2016 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 38 432 5.1E-127 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 Pfam PF00815 Histidinol dehydrogenase 28 433 1.4E-128 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 234 266 - T 14-09-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 SUPERFAMILY SSF53720 13 434 6.08E-58 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 Gene3D G3DSA:3.40.50.1980 33 244 6.1E-56 T 14-09-2016 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 PIRSF PIRSF000099 14 436 1.3E-117 T 14-09-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10885 3ba94ddcaa20a29792154392e202a992 436 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 1 433 31.768 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 SMART SM00847 465 561 1.7E-32 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 Pfam PF00271 Helicase conserved C-terminal domain 284 404 2.0E-10 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 Pfam PF04408 Helicase associated domain (HA2) 469 558 8.1E-16 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 SMART SM00382 86 263 7.5E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 PANTHER PTHR18934 53 707 5.7E-302 T 14-09-2016 ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 PANTHER PTHR18934 744 872 5.7E-302 T 14-09-2016 ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 SMART SM00490 302 405 7.0E-13 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 Pfam PF11898 Domain of unknown function (DUF3418) 717 1299 3.3E-196 T 14-09-2016 IPR024590 RNA helicase HrpA, C-terminal ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 SUPERFAMILY SSF52540 68 605 7.22E-107 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 Gene3D G3DSA:3.40.50.300 71 227 1.9E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 602 702 4.5E-17 T 14-09-2016 IPR011709 Domain of unknown function DUF1605 ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 SMART SM00487 69 258 6.0E-29 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 Pfam PF00270 DEAD/DEAH box helicase 81 227 3.2E-6 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 14 1299 0.0 T 14-09-2016 IPR010222 RNA helicase HrpA GO:0004004 ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 Gene3D G3DSA:3.40.50.300 277 419 2.2E-10 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 PANTHER PTHR18934:SF109 53 707 5.7E-302 T 14-09-2016 ccrud_RS08315 93ea3cb3f5759cc6b444ba7ffcc06cb9 1302 PANTHER PTHR18934:SF109 744 872 5.7E-302 T 14-09-2016 ccrud_RS07605 022c8f2d94ac7a9f80a6a533c673c540 322 Pfam PF00107 Zinc-binding dehydrogenase 147 250 1.4E-25 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS07605 022c8f2d94ac7a9f80a6a533c673c540 322 Gene3D G3DSA:3.40.50.720 144 249 3.5E-27 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07605 022c8f2d94ac7a9f80a6a533c673c540 322 PANTHER PTHR11695 15 322 9.6E-103 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS07605 022c8f2d94ac7a9f80a6a533c673c540 322 SMART SM00829 10 317 1.1E-12 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS07605 022c8f2d94ac7a9f80a6a533c673c540 322 Gene3D G3DSA:3.90.180.10 1 143 2.6E-39 T 14-09-2016 IPR011032 GroES-like ccrud_RS07605 022c8f2d94ac7a9f80a6a533c673c540 322 SUPERFAMILY SSF51735 107 264 8.11E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07605 022c8f2d94ac7a9f80a6a533c673c540 322 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 95 3.7E-6 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS07605 022c8f2d94ac7a9f80a6a533c673c540 322 SUPERFAMILY SSF50129 1 132 1.83E-34 T 14-09-2016 IPR011032 GroES-like ccrud_RS07605 022c8f2d94ac7a9f80a6a533c673c540 322 PANTHER PTHR11695:SF605 15 322 9.6E-103 T 14-09-2016 ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 Pfam PF01965 DJ-1/PfpI family 13 180 5.8E-9 T 14-09-2016 IPR002818 DJ-1/PfpI ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 SUPERFAMILY SSF46689 273 323 1.21E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 Gene3D G3DSA:1.10.10.60 221 274 9.4E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 PANTHER PTHR11019 48 325 2.1E-81 T 14-09-2016 ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 Pfam PF12833 Helix-turn-helix domain 242 321 1.3E-23 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 SUPERFAMILY SSF46689 222 270 4.26E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 Gene3D G3DSA:3.40.50.880 12 201 3.5E-41 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 SUPERFAMILY SSF52317 12 201 2.75E-38 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 273 315 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 SMART SM00342 236 319 5.9E-29 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 PANTHER PTHR11019:SF68 48 325 2.1E-81 T 14-09-2016 ccrud_RS00590 99579d9b024bcf7607865bcb5b850bbf 325 Gene3D G3DSA:1.10.10.60 275 323 7.3E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 Gene3D G3DSA:3.30.300.30 481 603 5.3E-6 T 14-09-2016 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 PANTHER PTHR24096 1 615 2.1E-168 T 14-09-2016 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 PANTHER PTHR24096:SF193 1 615 2.1E-168 T 14-09-2016 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 Pfam PF00501 AMP-binding enzyme 43 483 1.8E-89 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 Gene3D G3DSA:3.40.50.980 22 205 2.3E-30 T 14-09-2016 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 ProSitePatterns PS00455 Putative AMP-binding domain signature. 199 210 - T 14-09-2016 IPR020845 AMP-binding, conserved site ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 Gene3D G3DSA:2.30.38.10 414 474 4.6E-18 T 14-09-2016 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 Gene3D G3DSA:3.40.50.980 352 413 2.2E-25 T 14-09-2016 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 Gene3D G3DSA:3.40.50.980 206 299 2.2E-25 T 14-09-2016 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 SUPERFAMILY SSF56801 355 614 9.55E-106 T 14-09-2016 ccrud_RS10140 64e777f0652bd7abf3b39e18954190b7 615 SUPERFAMILY SSF56801 22 304 9.55E-106 T 14-09-2016 ccrud_RS10990 d070fb1d4e26d20181bceffc2fd6333a 149 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 37 104 1.4E-9 T 14-09-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 ccrud_RS10990 d070fb1d4e26d20181bceffc2fd6333a 149 Gene3D G3DSA:3.40.720.10 16 127 1.1E-17 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 ccrud_RS10990 d070fb1d4e26d20181bceffc2fd6333a 149 SUPERFAMILY SSF53649 18 127 3.53E-19 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 ccrud_RS09705 4b80f99677af658b60bbc034a6645210 367 Gene3D G3DSA:3.20.10.10 180 351 4.9E-68 T 14-09-2016 ccrud_RS09705 4b80f99677af658b60bbc034a6645210 367 Gene3D G3DSA:3.30.470.10 13 179 1.4E-71 T 14-09-2016 ccrud_RS09705 4b80f99677af658b60bbc034a6645210 367 Pfam PF01063 Amino-transferase class IV 74 320 1.8E-33 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS09705 4b80f99677af658b60bbc034a6645210 367 PANTHER PTHR11825:SF2 3 364 1.7E-146 T 14-09-2016 ccrud_RS09705 4b80f99677af658b60bbc034a6645210 367 PANTHER PTHR11825 3 364 1.7E-146 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS09705 4b80f99677af658b60bbc034a6645210 367 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 48 363 5.3E-135 T 14-09-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 ccrud_RS09705 4b80f99677af658b60bbc034a6645210 367 PIRSF PIRSF006468 3 366 7.2E-134 T 14-09-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 ccrud_RS09705 4b80f99677af658b60bbc034a6645210 367 SUPERFAMILY SSF56752 4 362 3.14E-117 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS09705 4b80f99677af658b60bbc034a6645210 367 Pfam PF12427 Branched-chain amino acid aminotransferase 4 25 3.0E-14 T 14-09-2016 IPR024614 Branched-chain amino acid aminotransferase II, N-terminal ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PANTHER PTHR23115:SF69 310 513 9.3E-173 T 14-09-2016 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PANTHER PTHR23115:SF69 262 290 9.3E-173 T 14-09-2016 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 Pfam PF00009 Elongation factor Tu GTP binding domain 15 288 5.7E-50 T 14-09-2016 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PANTHER PTHR23115 310 513 9.3E-173 T 14-09-2016 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PANTHER PTHR23115 262 290 9.3E-173 T 14-09-2016 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 7 547 46.671 T 14-09-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 SUPERFAMILY SSF52540 13 288 5.47E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 SUPERFAMILY SSF54980 414 488 7.91E-11 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 Pfam PF16658 Class II release factor RF3, C-terminal domain 408 534 7.5E-38 T 14-09-2016 IPR032090 Peptide chain release factor 3, C-terminal ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 Gene3D G3DSA:3.30.70.870 416 486 4.9E-7 T 14-09-2016 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 SUPERFAMILY SSF50447 273 414 1.55E-22 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 11 544 7.0E-149 T 14-09-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PRINTS PR00315 GTP-binding elongation factor signature 68 76 2.8E-10 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PRINTS PR00315 GTP-binding elongation factor signature 95 105 2.8E-10 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PRINTS PR00315 GTP-binding elongation factor signature 111 122 2.8E-10 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PRINTS PR00315 GTP-binding elongation factor signature 18 31 2.8E-10 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PRINTS PR00315 GTP-binding elongation factor signature 147 156 2.8E-10 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 Gene3D G3DSA:2.40.30.10 312 415 9.0E-19 T 14-09-2016 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 20 160 1.6E-24 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PANTHER PTHR23115 1 194 9.3E-173 T 14-09-2016 ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 Gene3D G3DSA:3.40.50.300 12 293 3.7E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04595 183ec8a13ada5a4973ed481c35f19533 549 PANTHER PTHR23115:SF69 1 194 9.3E-173 T 14-09-2016 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 PANTHER PTHR20854:SF38 1 259 2.4E-86 T 14-09-2016 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 SUPERFAMILY SSF56655 3 259 5.37E-70 T 14-09-2016 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 Gene3D G3DSA:3.30.540.10 3 155 6.4E-45 T 14-09-2016 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 Pfam PF00459 Inositol monophosphatase family 9 239 1.8E-46 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 Gene3D G3DSA:3.40.190.80 156 259 1.0E-17 T 14-09-2016 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 8 258 9.8E-92 T 14-09-2016 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15|UniPathway: UPA00031 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 62 78 7.4E-16 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 211 235 7.4E-16 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 40 60 7.4E-16 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 PRINTS PR00377 Inositol monophosphatase superfamily signature 82 98 7.4E-16 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 PANTHER PTHR20854 1 259 2.4E-86 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03875 b99c6cf5834d7c412d8f20abd0df2cd4 261 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 82 95 - T 14-09-2016 IPR020583 Inositol monophosphatase, metal-binding site ccrud_RS05630 cb32c3bd3d31cfa39deb9c3a1b1b9a52 220 Gene3D G3DSA:3.40.810.20 3 210 3.8E-87 T 14-09-2016 ccrud_RS05630 cb32c3bd3d31cfa39deb9c3a1b1b9a52 220 SUPERFAMILY SSF100950 3 212 1.81E-70 T 14-09-2016 ccrud_RS05630 cb32c3bd3d31cfa39deb9c3a1b1b9a52 220 Pfam PF01144 Coenzyme A transferase 7 201 1.4E-34 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS05630 cb32c3bd3d31cfa39deb9c3a1b1b9a52 220 PANTHER PTHR13707 2 220 3.1E-120 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS05630 cb32c3bd3d31cfa39deb9c3a1b1b9a52 220 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 3 209 1.7E-94 T 14-09-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 ccrud_RS05630 cb32c3bd3d31cfa39deb9c3a1b1b9a52 220 SMART SM00882 6 202 1.3E-69 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS04615 083ee3b33608bca48ecd5ab8acbbe766 242 PANTHER PTHR24220:SF366 4 238 2.5E-90 T 14-09-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD ccrud_RS04615 083ee3b33608bca48ecd5ab8acbbe766 242 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 217 238 1.6E-6 T 14-09-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal ccrud_RS04615 083ee3b33608bca48ecd5ab8acbbe766 242 SMART SM00382 27 216 4.5E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04615 083ee3b33608bca48ecd5ab8acbbe766 242 Pfam PF00005 ABC transporter 19 169 6.2E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS04615 083ee3b33608bca48ecd5ab8acbbe766 242 PANTHER PTHR24220 4 238 2.5E-90 T 14-09-2016 ccrud_RS04615 083ee3b33608bca48ecd5ab8acbbe766 242 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 2 239 1.3E-95 T 14-09-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD ccrud_RS04615 083ee3b33608bca48ecd5ab8acbbe766 242 SUPERFAMILY SSF52540 3 238 2.71E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04615 083ee3b33608bca48ecd5ab8acbbe766 242 Gene3D G3DSA:3.40.50.300 3 236 5.2E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04150 51bbff1480b21c792696de5691b9261e 79 Pfam PF00462 Glutaredoxin 4 62 2.5E-10 T 14-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 ccrud_RS04150 51bbff1480b21c792696de5691b9261e 79 TIGRFAM TIGR02200 GlrX_actino: glutaredoxin-like protein 4 75 6.0E-34 T 14-09-2016 IPR011915 Glutaredoxin-like protein, actinobacteria ccrud_RS04150 51bbff1480b21c792696de5691b9261e 79 Gene3D G3DSA:3.40.30.10 3 66 1.2E-11 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS04150 51bbff1480b21c792696de5691b9261e 79 SUPERFAMILY SSF52833 1 66 2.1E-12 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624:SF67 580 797 0.0 T 14-09-2016 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624:SF67 507 559 0.0 T 14-09-2016 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624:SF67 96 317 0.0 T 14-09-2016 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 SUPERFAMILY SSF52518 79 496 1.04E-134 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 158 322 2.4E-9 T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PIRSF PIRSF000156 18 916 0.0 T 14-09-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 Gene3D G3DSA:3.40.50.970 79 494 6.2E-155 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624:SF67 386 477 0.0 T 14-09-2016 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624:SF67 816 899 0.0 T 14-09-2016 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 SUPERFAMILY SSF52922 732 910 3.14E-47 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624 507 559 0.0 T 14-09-2016 IPR033247 Transketolase family ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624 386 477 0.0 T 14-09-2016 IPR033247 Transketolase family ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624 816 899 0.0 T 14-09-2016 IPR033247 Transketolase family ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624 96 317 0.0 T 14-09-2016 IPR033247 Transketolase family ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 Gene3D G3DSA:3.40.50.920 737 910 6.2E-59 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 PANTHER PTHR11624 580 797 0.0 T 14-09-2016 IPR033247 Transketolase family ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 27 909 0.0 T 14-09-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 Gene3D G3DSA:3.40.50.970 499 733 1.5E-110 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS09900 8f764571b4a6599b5f90e9bed37eb76b 922 SUPERFAMILY SSF52518 499 729 1.91E-86 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS03665 80821aef1118dcacb45aa3047c7cd1a6 203 Pfam PF02223 Thymidylate kinase 5 174 2.6E-16 T 14-09-2016 ccrud_RS03665 80821aef1118dcacb45aa3047c7cd1a6 203 SUPERFAMILY SSF52540 1 200 9.69E-33 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03665 80821aef1118dcacb45aa3047c7cd1a6 203 Gene3D G3DSA:3.40.50.300 1 199 6.1E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03665 80821aef1118dcacb45aa3047c7cd1a6 203 ProSitePatterns PS01331 Thymidylate kinase signature. 83 95 - T 14-09-2016 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 ccrud_RS03665 80821aef1118dcacb45aa3047c7cd1a6 203 Hamap MF_00165 Thymidylate kinase [tmk]. 1 203 13.566 T 14-09-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 ccrud_RS03665 80821aef1118dcacb45aa3047c7cd1a6 203 PANTHER PTHR10344 1 181 6.6E-24 T 14-09-2016 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 Gene3D G3DSA:1.10.10.10 262 330 8.1E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 SUPERFAMILY SSF88946 30 168 5.1E-51 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 PRINTS PR00046 Major sigma-70 factor signature 306 317 9.2E-28 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 PRINTS PR00046 Major sigma-70 factor signature 291 306 9.2E-28 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 PRINTS PR00046 Major sigma-70 factor signature 122 135 9.2E-28 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 PRINTS PR00046 Major sigma-70 factor signature 270 282 9.2E-28 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 PRINTS PR00046 Major sigma-70 factor signature 146 154 9.2E-28 T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 Gene3D G3DSA:1.10.601.10 25 167 5.5E-61 T 14-09-2016 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 Pfam PF00140 Sigma-70 factor, region 1.2 32 65 1.2E-11 T 14-09-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 291 317 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 122 135 - T 14-09-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 Pfam PF04539 Sigma-70 region 3 177 252 2.8E-24 T 14-09-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 Pfam PF04542 Sigma-70 region 2 98 167 7.2E-22 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 PANTHER PTHR30603 30 329 6.6E-155 T 14-09-2016 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 94 319 3.1E-36 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 PANTHER PTHR30603:SF0 30 329 6.6E-155 T 14-09-2016 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 SUPERFAMILY SSF88659 228 324 1.03E-24 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 SUPERFAMILY SSF88659 171 244 1.53E-17 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 Pfam PF04545 Sigma-70, region 4 266 319 1.3E-18 T 14-09-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS08275 a5daa4ea4b8a1bedea7f5c8e594aba8a 331 Gene3D G3DSA:1.10.10.10 171 222 5.7E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04305 08a7e84ca0486b5072323d1d55f41ba1 88 SUPERFAMILY SSF143800 1 81 3.73E-23 T 14-09-2016 ccrud_RS04305 08a7e84ca0486b5072323d1d55f41ba1 88 PRINTS PR01249 Ribosomal protein L31 signature 60 78 2.8E-17 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04305 08a7e84ca0486b5072323d1d55f41ba1 88 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.8E-17 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04305 08a7e84ca0486b5072323d1d55f41ba1 88 PRINTS PR01249 Ribosomal protein L31 signature 45 60 2.8E-17 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04305 08a7e84ca0486b5072323d1d55f41ba1 88 PANTHER PTHR33280 1 84 7.5E-31 T 14-09-2016 ccrud_RS04305 08a7e84ca0486b5072323d1d55f41ba1 88 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 1.9E-21 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04305 08a7e84ca0486b5072323d1d55f41ba1 88 Pfam PF01197 Ribosomal protein L31 1 79 6.0E-31 T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04305 08a7e84ca0486b5072323d1d55f41ba1 88 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 25.951 T 14-09-2016 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04305 08a7e84ca0486b5072323d1d55f41ba1 88 ProSitePatterns PS01143 Ribosomal protein L31 signature. 49 70 - T 14-09-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS03670 83c7470195f5a5209016d575c7016a0d 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 2.7E-25 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS03670 83c7470195f5a5209016d575c7016a0d 226 SUPERFAMILY SSF52172 4 180 4.98E-42 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS03670 83c7470195f5a5209016d575c7016a0d 226 PANTHER PTHR26402 3 221 5.9E-104 T 14-09-2016 ccrud_RS03670 83c7470195f5a5209016d575c7016a0d 226 Gene3D G3DSA:3.40.50.2300 3 119 7.4E-40 T 14-09-2016 ccrud_RS03670 83c7470195f5a5209016d575c7016a0d 226 Pfam PF00072 Response regulator receiver domain 5 114 4.6E-30 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS03670 83c7470195f5a5209016d575c7016a0d 226 SMART SM00862 146 222 1.3E-25 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS03670 83c7470195f5a5209016d575c7016a0d 226 PANTHER PTHR26402:SF50 3 221 5.9E-104 T 14-09-2016 ccrud_RS03670 83c7470195f5a5209016d575c7016a0d 226 Gene3D G3DSA:1.10.10.10 124 221 6.0E-35 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03670 83c7470195f5a5209016d575c7016a0d 226 SMART SM00448 3 113 1.1E-44 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 2 271 8.8E-70 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 Gene3D G3DSA:3.10.310.10 130 258 3.7E-37 T 14-09-2016 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 Pfam PF01678 Diaminopimelate epimerase 3 132 2.6E-32 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 Pfam PF01678 Diaminopimelate epimerase 151 261 2.1E-24 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 70 84 - T 14-09-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 SUPERFAMILY SSF54506 1 133 1.12E-33 T 14-09-2016 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 1 273 29.557 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 SUPERFAMILY SSF54506 141 270 4.71E-31 T 14-09-2016 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 Gene3D G3DSA:3.10.310.10 1 129 8.9E-40 T 14-09-2016 ccrud_RS08395 f6b1df3a84c1f68659bafdc670c6e862 273 PANTHER PTHR31689 1 271 2.6E-78 T 14-09-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS10840 80836ade1f45c78307831b2fa5b03e98 327 PANTHER PTHR30146 1 325 1.5E-84 T 14-09-2016 ccrud_RS10840 80836ade1f45c78307831b2fa5b03e98 327 SMART SM00354 1 71 1.2E-25 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS10840 80836ade1f45c78307831b2fa5b03e98 327 Gene3D G3DSA:3.40.50.2300 170 307 5.7E-38 T 14-09-2016 ccrud_RS10840 80836ade1f45c78307831b2fa5b03e98 327 Pfam PF13377 Periplasmic binding protein-like domain 167 325 1.2E-25 T 14-09-2016 ccrud_RS10840 80836ade1f45c78307831b2fa5b03e98 327 Gene3D G3DSA:1.10.260.40 6 53 4.1E-22 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS10840 80836ade1f45c78307831b2fa5b03e98 327 SUPERFAMILY SSF47413 2 60 5.89E-17 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS10840 80836ade1f45c78307831b2fa5b03e98 327 Gene3D G3DSA:3.40.50.2300 54 169 7.1E-24 T 14-09-2016 ccrud_RS10840 80836ade1f45c78307831b2fa5b03e98 327 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 48 6.5E-17 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS10840 80836ade1f45c78307831b2fa5b03e98 327 SUPERFAMILY SSF53822 62 326 2.72E-54 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS04395 5117c73bef8480cdcdb50d51c3d0acec 520 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 105 291 1.3E-10 T 14-09-2016 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 ccrud_RS04395 5117c73bef8480cdcdb50d51c3d0acec 520 PANTHER PTHR10050:SF29 217 298 8.6E-28 T 14-09-2016 ccrud_RS04395 5117c73bef8480cdcdb50d51c3d0acec 520 Pfam PF16192 C-terminal four TMM region of protein-O-mannosyltransferase 329 519 3.3E-23 T 14-09-2016 IPR032421 Protein O-mannosyl-transferase, C-terminal four TM domain KEGG: 00500+2.4.1.10|KEGG: 00514+2.4.1.109|MetaCyc: PWY-822|UniPathway: UPA00378 ccrud_RS04395 5117c73bef8480cdcdb50d51c3d0acec 520 PANTHER PTHR10050 217 298 8.6E-28 T 14-09-2016 IPR027005 Glycosyltransferase 39-like ccrud_RS04395 5117c73bef8480cdcdb50d51c3d0acec 520 PANTHER PTHR10050 26 201 8.6E-28 T 14-09-2016 IPR027005 Glycosyltransferase 39-like ccrud_RS04395 5117c73bef8480cdcdb50d51c3d0acec 520 PANTHER PTHR10050:SF29 26 201 8.6E-28 T 14-09-2016 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 8 381 3.2E-161 T 14-09-2016 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 PANTHER PTHR11739:SF4 5 381 2.0E-131 T 14-09-2016 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 PIRSF PIRSF001369 1 381 7.7E-119 T 14-09-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 SUPERFAMILY SSF48256 6 381 1.57E-121 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 Pfam PF00285 Citrate synthase, C-terminal domain 9 363 8.3E-112 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 PRINTS PR00143 Citrate synthase signature 127 140 2.6E-38 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 PRINTS PR00143 Citrate synthase signature 257 277 2.6E-38 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 PRINTS PR00143 Citrate synthase signature 314 330 2.6E-38 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 PRINTS PR00143 Citrate synthase signature 182 197 2.6E-38 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 PRINTS PR00143 Citrate synthase signature 204 232 2.6E-38 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 PRINTS PR00143 Citrate synthase signature 334 348 2.6E-38 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 PANTHER PTHR11739 5 381 2.0E-131 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 Gene3D G3DSA:1.10.580.10 18 243 1.1E-74 T 14-09-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 ProSitePatterns PS00480 Citrate synthase signature. 264 276 - T 14-09-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 ccrud_RS03445 b944d03cde572848d58793f88aa47275 381 Gene3D G3DSA:1.10.230.10 244 328 4.9E-26 T 14-09-2016 IPR016143 Citrate synthase-like, small alpha subdomain ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 SMART SM00898 2 128 6.9E-45 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 Gene3D G3DSA:1.10.8.50 145 284 3.9E-43 T 14-09-2016 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 SUPERFAMILY SSF46946 143 232 1.62E-24 T 14-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 Gene3D G3DSA:3.20.190.10 2 131 3.0E-34 T 14-09-2016 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 283 4.6E-82 T 14-09-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 ProSitePatterns PS01242 Zinc finger FPG-type signature. 259 283 - T 14-09-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 144 230 1.1E-22 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 284 38.658 T 14-09-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 SUPERFAMILY SSF81624 2 130 1.7E-32 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 SUPERFAMILY SSF57716 235 284 2.35E-15 T 14-09-2016 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 PANTHER PTHR22993 2 285 1.4E-94 T 14-09-2016 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 2 127 5.7E-31 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 PANTHER PTHR22993:SF15 2 285 1.4E-94 T 14-09-2016 ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 Pfam PF06827 Zinc finger found in FPG and IleRS 256 284 1.2E-11 T 14-09-2016 IPR010663 Zinc finger, FPG/IleRS-type ccrud_RS09070 38e98b89a3897ab63fdc26fdbe10b935 286 SMART SM01232 143 235 7.2E-35 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 184 316 1.9E-25 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 Gene3D G3DSA:3.90.105.10 138 168 4.2E-6 T 14-09-2016 ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 PANTHER PTHR10192 7 380 1.0E-81 T 14-09-2016 ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 Pfam PF00994 Probable molybdopterin binding domain 188 319 4.8E-25 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 SMART SM00852 187 320 1.2E-31 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 Gene3D G3DSA:3.40.980.10 169 326 4.8E-42 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 Gene3D G3DSA:2.170.190.11 48 137 2.3E-20 T 14-09-2016 ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 SUPERFAMILY SSF53218 184 324 1.26E-34 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 SUPERFAMILY SSF63882 6 181 7.72E-32 T 14-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS05775 f21e94b39a02c7d254e594c1843c6888 405 Pfam PF03453 MoeA N-terminal region (domain I and II) 36 174 2.6E-20 T 14-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 Gene3D G3DSA:3.40.50.300 1 163 1.7E-88 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 Gene3D G3DSA:3.40.50.300 994 1142 1.7E-88 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1147 21.314 T 14-09-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 PANTHER PTHR18937:SF261 1 1148 2.7E-264 T 14-09-2016 ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 PANTHER PTHR18937 1 1148 2.7E-264 T 14-09-2016 ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 SUPERFAMILY SSF75553 465 636 2.62E-10 T 14-09-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 Pfam PF06470 SMC proteins Flexible Hinge Domain 504 609 8.5E-8 T 14-09-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 1138 1.1E-71 T 14-09-2016 IPR003395 RecF/RecN/SMC, N-terminal ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 PIRSF PIRSF005719 1 1150 5.8E-235 T 14-09-2016 IPR024704 Structural maintenance of chromosomes protein ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 SUPERFAMILY SSF52540 1 207 1.92E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 SUPERFAMILY SSF52540 947 1140 1.92E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09010 c2908d7d99cee57e281a9c7ed5d6ab7a 1151 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1145 2.6E-266 T 14-09-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 ccrud_RS08650 3177080f8d2a8569edd1d6b2d140d2e7 533 SUPERFAMILY SSF53850 40 527 8.69E-94 T 14-09-2016 ccrud_RS08650 3177080f8d2a8569edd1d6b2d140d2e7 533 Gene3D G3DSA:3.40.190.10 199 316 6.3E-22 T 14-09-2016 ccrud_RS08650 3177080f8d2a8569edd1d6b2d140d2e7 533 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 84 454 2.8E-55 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain ccrud_RS08650 3177080f8d2a8569edd1d6b2d140d2e7 533 Gene3D G3DSA:3.90.76.10 54 198 2.4E-34 T 14-09-2016 ccrud_RS08650 3177080f8d2a8569edd1d6b2d140d2e7 533 PIRSF PIRSF002741 1 528 1.7E-64 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ccrud_RS08650 3177080f8d2a8569edd1d6b2d140d2e7 533 Gene3D G3DSA:3.10.105.10 317 504 6.1E-46 T 14-09-2016 ccrud_RS08650 3177080f8d2a8569edd1d6b2d140d2e7 533 PANTHER PTHR30290 1 531 4.9E-101 T 14-09-2016 ccrud_RS08650 3177080f8d2a8569edd1d6b2d140d2e7 533 PANTHER PTHR30290:SF10 1 531 4.9E-101 T 14-09-2016 ccrud_RS09985 6bc8d6307c06bf3d6cf65d36aa5f05df 612 PANTHER PTHR31616:SF0 7 605 2.2E-147 T 14-09-2016 ccrud_RS09985 6bc8d6307c06bf3d6cf65d36aa5f05df 612 PANTHER PTHR31616 7 605 2.2E-147 T 14-09-2016 ccrud_RS09985 6bc8d6307c06bf3d6cf65d36aa5f05df 612 Pfam PF00723 Glycosyl hydrolases family 15 255 548 5.6E-46 T 14-09-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 ccrud_RS09985 6bc8d6307c06bf3d6cf65d36aa5f05df 612 Gene3D G3DSA:1.50.10.10 237 605 2.1E-77 T 14-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 ccrud_RS09985 6bc8d6307c06bf3d6cf65d36aa5f05df 612 SUPERFAMILY SSF48208 209 605 9.19E-94 T 14-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 7 325 6.0E-81 T 14-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 7 487 30.361 T 14-09-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 PANTHER PTHR11451 6 331 1.3E-83 T 14-09-2016 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 SUPERFAMILY SSF52374 7 318 5.36E-99 T 14-09-2016 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 Gene3D G3DSA:3.90.800.10 72 194 3.2E-36 T 14-09-2016 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 Gene3D G3DSA:1.10.10.350 391 486 9.2E-18 T 14-09-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 PANTHER PTHR11451:SF41 450 461 1.3E-83 T 14-09-2016 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 PANTHER PTHR11451:SF41 6 331 1.3E-83 T 14-09-2016 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 Gene3D G3DSA:1.10.1160.10 253 335 2.2E-27 T 14-09-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 SUPERFAMILY SSF48163 320 485 2.49E-32 T 14-09-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 PRINTS PR00987 Glutamyl-tRNA synthetase signature 24 35 1.6E-22 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 PRINTS PR00987 Glutamyl-tRNA synthetase signature 194 204 1.6E-22 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 PRINTS PR00987 Glutamyl-tRNA synthetase signature 210 218 1.6E-22 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 PRINTS PR00987 Glutamyl-tRNA synthetase signature 10 22 1.6E-22 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 PRINTS PR00987 Glutamyl-tRNA synthetase signature 39 52 1.6E-22 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 PANTHER PTHR11451 450 461 1.3E-83 T 14-09-2016 ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 Gene3D G3DSA:3.40.50.620 196 250 4.2E-43 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 Gene3D G3DSA:3.40.50.620 7 71 4.2E-43 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS06185 4bbb254607213407027b8abab9f6a4eb 496 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 7 485 4.1E-127 T 14-09-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 ccrud_RS09515 aa4166f1c1f8b7943357431cbd4e130b 188 Pfam PF00583 Acetyltransferase (GNAT) family 57 159 6.2E-9 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS09515 aa4166f1c1f8b7943357431cbd4e130b 188 SUPERFAMILY SSF55729 17 171 5.4E-17 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS09515 aa4166f1c1f8b7943357431cbd4e130b 188 Gene3D G3DSA:3.40.630.30 41 183 8.6E-17 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS08080 2da880ec8919e9d42621155d7341ff20 220 PANTHER PTHR23089:SF16 7 194 2.2E-67 T 14-09-2016 ccrud_RS08080 2da880ec8919e9d42621155d7341ff20 220 SUPERFAMILY SSF54197 70 195 2.84E-34 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 ccrud_RS08080 2da880ec8919e9d42621155d7341ff20 220 Pfam PF01230 HIT domain 73 162 2.4E-12 T 14-09-2016 IPR001310 Histidine triad (HIT) protein ccrud_RS08080 2da880ec8919e9d42621155d7341ff20 220 PANTHER PTHR23089 7 194 2.2E-67 T 14-09-2016 IPR001310 Histidine triad (HIT) protein ccrud_RS08080 2da880ec8919e9d42621155d7341ff20 220 Gene3D G3DSA:3.30.428.10 68 195 1.4E-36 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 ccrud_RS12660 d270801745468cc50cdcd116b9f6ae41 261 PANTHER PTHR23293:SF5 33 260 6.9E-66 T 14-09-2016 ccrud_RS12660 d270801745468cc50cdcd116b9f6ae41 261 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 73 237 3.2E-33 T 14-09-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 ccrud_RS12660 d270801745468cc50cdcd116b9f6ae41 261 PIRSF PIRSF000857 19 261 2.6E-79 T 14-09-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 ccrud_RS12660 d270801745468cc50cdcd116b9f6ae41 261 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 73 259 4.8E-74 T 14-09-2016 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 ccrud_RS12660 d270801745468cc50cdcd116b9f6ae41 261 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 55 260 1.7E-53 T 14-09-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 ccrud_RS12660 d270801745468cc50cdcd116b9f6ae41 261 PANTHER PTHR23293 33 260 6.9E-66 T 14-09-2016 ccrud_RS12660 d270801745468cc50cdcd116b9f6ae41 261 Gene3D G3DSA:3.40.50.620 38 232 2.5E-42 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS12660 d270801745468cc50cdcd116b9f6ae41 261 SUPERFAMILY SSF52402 49 225 2.15E-34 T 14-09-2016 ccrud_RS11320 dc84437034a8311978be839e869964a3 669 Gene3D G3DSA:3.40.50.300 137 138 1.6E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11320 dc84437034a8311978be839e869964a3 669 Gene3D G3DSA:3.40.50.300 32 104 1.6E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11320 dc84437034a8311978be839e869964a3 669 Gene3D G3DSA:3.40.50.300 421 430 1.6E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11320 dc84437034a8311978be839e869964a3 669 Gene3D G3DSA:3.40.50.300 206 282 1.6E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11320 dc84437034a8311978be839e869964a3 669 Pfam PF13307 Helicase C-terminal domain 489 649 7.7E-31 T 14-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 ccrud_RS11320 dc84437034a8311978be839e869964a3 669 Pfam PF06733 DEAD_2 211 276 1.3E-5 T 14-09-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 ccrud_RS11320 dc84437034a8311978be839e869964a3 669 Pfam PF00270 DEAD/DEAH box helicase 49 104 1.1E-6 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS11320 dc84437034a8311978be839e869964a3 669 Gene3D G3DSA:3.40.50.300 484 630 5.9E-4 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11320 dc84437034a8311978be839e869964a3 669 SMART SM00491 507 636 4.6E-38 T 14-09-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 ccrud_RS11320 dc84437034a8311978be839e869964a3 669 PANTHER PTHR11472:SF37 12 651 3.7E-161 T 14-09-2016 ccrud_RS11320 dc84437034a8311978be839e869964a3 669 SUPERFAMILY SSF52540 468 627 1.92E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11320 dc84437034a8311978be839e869964a3 669 SUPERFAMILY SSF52540 52 106 1.92E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11320 dc84437034a8311978be839e869964a3 669 SUPERFAMILY SSF52540 206 276 1.92E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11320 dc84437034a8311978be839e869964a3 669 SUPERFAMILY SSF52540 419 433 1.92E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11320 dc84437034a8311978be839e869964a3 669 PANTHER PTHR11472 12 651 3.7E-161 T 14-09-2016 ccrud_RS11320 dc84437034a8311978be839e869964a3 669 SMART SM00487 34 297 4.7E-7 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS09770 f36080ea1b46e74b5d202aaa3ec75ffb 178 SUPERFAMILY SSF55811 17 167 2.57E-25 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS09770 f36080ea1b46e74b5d202aaa3ec75ffb 178 PANTHER PTHR22769 44 152 3.8E-14 T 14-09-2016 ccrud_RS09770 f36080ea1b46e74b5d202aaa3ec75ffb 178 PANTHER PTHR22769:SF37 44 152 3.8E-14 T 14-09-2016 ccrud_RS09770 f36080ea1b46e74b5d202aaa3ec75ffb 178 Gene3D G3DSA:3.90.79.10 10 162 1.6E-26 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS09770 f36080ea1b46e74b5d202aaa3ec75ffb 178 Pfam PF00293 NUDIX domain 44 142 3.1E-13 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS09770 f36080ea1b46e74b5d202aaa3ec75ffb 178 ProSitePatterns PS00893 Nudix box signature. 60 81 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 PANTHER PTHR10907 18 315 7.9E-47 T 14-09-2016 ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 PANTHER PTHR10907:SF56 331 425 7.9E-47 T 14-09-2016 ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 Pfam PF00756 Putative esterase 109 379 4.3E-66 T 14-09-2016 IPR000801 Putative esterase ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 Gene3D G3DSA:3.40.50.1820 104 384 1.2E-89 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 PANTHER PTHR10907:SF56 18 315 7.9E-47 T 14-09-2016 ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 Pfam PF08310 LGFP repeat 461 513 8.4E-18 T 14-09-2016 IPR013207 LGFP ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 Pfam PF08310 LGFP repeat 410 458 1.8E-12 T 14-09-2016 IPR013207 LGFP ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 Pfam PF08310 LGFP repeat 515 561 1.5E-7 T 14-09-2016 IPR013207 LGFP ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 Pfam PF08310 LGFP repeat 566 617 3.4E-18 T 14-09-2016 IPR013207 LGFP ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 PANTHER PTHR10907 331 425 7.9E-47 T 14-09-2016 ccrud_RS13090 67368a63fe3c98c9924dff3039ac4bc2 654 SUPERFAMILY SSF53474 99 384 1.87E-38 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PIRSF PIRSF000532 1 342 1.6E-116 T 14-09-2016 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 ProSitePatterns PS00433 Phosphofructokinase signature. 267 285 - T 14-09-2016 IPR015912 Phosphofructokinase, conserved site GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 Hamap MF_01976 Pyrophosphate--fructose 6-phosphate 1-phosphotransferase [pfp]. 1 343 44.372 T 14-09-2016 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 SUPERFAMILY SSF53784 1 341 1.7E-121 T 14-09-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 Gene3D G3DSA:3.40.50.450 1 211 2.6E-73 T 14-09-2016 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 94 110 1.9E-78 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 213 225 1.9E-78 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 121 138 1.9E-78 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 139 157 1.9E-78 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 5 24 1.9E-78 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 159 175 1.9E-78 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 177 194 1.9E-78 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 1.9E-78 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 263 285 1.9E-78 T 14-09-2016 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 PANTHER PTHR13697 1 342 5.0E-127 T 14-09-2016 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 Pfam PF00365 Phosphofructokinase 2 298 5.6E-104 T 14-09-2016 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS06015 355af32a228015f2e0cbee61824aad18 343 TIGRFAM TIGR02483 PFK_mixed: phosphofructokinase 2 324 1.0E-149 T 14-09-2016 IPR012829 Phosphofructokinase, mixed-substrate PFK group III GO:0006096|GO:0047334 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS06515 f9d1f0b94656533da9406f9947bb2b8a 331 PANTHER PTHR18966:SF191 67 313 7.7E-24 T 14-09-2016 ccrud_RS06515 f9d1f0b94656533da9406f9947bb2b8a 331 SUPERFAMILY SSF53850 80 314 7.03E-45 T 14-09-2016 ccrud_RS06515 f9d1f0b94656533da9406f9947bb2b8a 331 SMART SM00062 90 317 1.2E-25 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ccrud_RS06515 f9d1f0b94656533da9406f9947bb2b8a 331 Gene3D G3DSA:3.40.190.10 199 272 1.9E-10 T 14-09-2016 ccrud_RS06515 f9d1f0b94656533da9406f9947bb2b8a 331 Gene3D G3DSA:3.40.190.10 49 198 3.7E-29 T 14-09-2016 ccrud_RS06515 f9d1f0b94656533da9406f9947bb2b8a 331 PANTHER PTHR18966 67 313 7.7E-24 T 14-09-2016 ccrud_RS06515 f9d1f0b94656533da9406f9947bb2b8a 331 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 91 314 5.1E-39 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ccrud_RS13115 73d32ec55e6697f1391ea4ed862e378d 332 PANTHER PTHR11048 40 211 2.7E-63 T 14-09-2016 ccrud_RS13115 73d32ec55e6697f1391ea4ed862e378d 332 Pfam PF01040 UbiA prenyltransferase family 58 301 3.5E-17 T 14-09-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 ccrud_RS13115 73d32ec55e6697f1391ea4ed862e378d 332 PANTHER PTHR11048:SF5 40 211 2.7E-63 T 14-09-2016 ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 Gene3D G3DSA:3.40.980.10 162 315 7.0E-39 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 Gene3D G3DSA:2.40.340.10 333 390 2.5E-10 T 14-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 Pfam PF00994 Probable molybdopterin binding domain 180 314 1.0E-17 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 Gene3D G3DSA:2.170.190.11 45 140 9.0E-17 T 14-09-2016 ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 Pfam PF03453 MoeA N-terminal region (domain I and II) 5 165 4.6E-28 T 14-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 SMART SM00852 179 315 4.8E-22 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 SUPERFAMILY SSF63882 4 174 4.19E-36 T 14-09-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 Gene3D G3DSA:3.90.105.10 24 44 1.4E-8 T 14-09-2016 ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 Gene3D G3DSA:3.90.105.10 141 161 1.4E-8 T 14-09-2016 ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 SUPERFAMILY SSF63867 332 394 1.7E-11 T 14-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 SUPERFAMILY SSF53218 176 314 3.8E-27 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 Pfam PF03454 MoeA C-terminal region (domain IV) 335 393 8.0E-11 T 14-09-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS01130 59e8f809ec515561e3ebfc1d4836fdf7 394 PANTHER PTHR10192 4 394 1.9E-73 T 14-09-2016 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 Gene3D G3DSA:1.20.58.410 4 95 4.4E-18 T 14-09-2016 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 Pfam PF00472 RF-1 domain 214 322 8.3E-40 T 14-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 229 245 - T 14-09-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 5 355 1.7E-139 T 14-09-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 4 358 35.087 T 14-09-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 SUPERFAMILY SSF75620 11 354 3.92E-121 T 14-09-2016 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 Pfam PF03462 PCRF domain 13 204 1.3E-61 T 14-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 Gene3D G3DSA:3.30.160.20 214 290 5.1E-35 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 SMART SM00937 66 179 9.4E-44 T 14-09-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 PANTHER PTHR11075 5 357 6.3E-140 T 14-09-2016 ccrud_RS05795 e46c8137ce5bd61adf32288c513c3d04 358 PANTHER PTHR11075:SF9 5 357 6.3E-140 T 14-09-2016 ccrud_RS06165 8e7ed25a51b2a28d1a0651838e2e5071 217 SUPERFAMILY SSF53098 27 209 1.39E-33 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS06165 8e7ed25a51b2a28d1a0651838e2e5071 217 SMART SM00479 34 209 3.7E-15 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III ccrud_RS06165 8e7ed25a51b2a28d1a0651838e2e5071 217 PANTHER PTHR30231 1 206 1.4E-47 T 14-09-2016 ccrud_RS06165 8e7ed25a51b2a28d1a0651838e2e5071 217 PANTHER PTHR30231:SF11 1 206 1.4E-47 T 14-09-2016 ccrud_RS06165 8e7ed25a51b2a28d1a0651838e2e5071 217 Pfam PF00929 Exonuclease 37 200 6.7E-10 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III ccrud_RS06165 8e7ed25a51b2a28d1a0651838e2e5071 217 Gene3D G3DSA:3.30.420.10 27 209 1.5E-37 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 Pfam PF07690 Major Facilitator Superfamily 25 419 2.4E-49 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 368 388 1.0E-10 T 14-09-2016 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 135 1.0E-10 T 14-09-2016 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 145 169 1.0E-10 T 14-09-2016 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 24 48 1.0E-10 T 14-09-2016 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 Gene3D G3DSA:1.20.1250.20 22 195 1.6E-28 T 14-09-2016 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 Gene3D G3DSA:1.20.1250.20 278 473 1.8E-20 T 14-09-2016 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 PANTHER PTHR23501 17 472 1.5E-123 T 14-09-2016 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 20 428 7.8E-81 T 14-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 PANTHER PTHR23501:SF82 17 472 1.5E-123 T 14-09-2016 ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 SUPERFAMILY SSF103473 12 204 1.83E-60 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS11205 19ffe370376f3c7bbe9c33c1634f9117 475 SUPERFAMILY SSF103473 258 472 1.83E-60 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13500 66d39b049e9a26ff812f1998513e5b2f 98 Gene3D G3DSA:3.30.70.60 4 98 3.0E-31 T 14-09-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 ccrud_RS13500 66d39b049e9a26ff812f1998513e5b2f 98 ProSitePatterns PS01048 Ribosomal protein S6 signature. 47 56 - T 14-09-2016 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS13500 66d39b049e9a26ff812f1998513e5b2f 98 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 4 98 20.404 T 14-09-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS13500 66d39b049e9a26ff812f1998513e5b2f 98 Pfam PF01250 Ribosomal protein S6 6 95 1.2E-25 T 14-09-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS13500 66d39b049e9a26ff812f1998513e5b2f 98 PANTHER PTHR21011 5 97 3.7E-21 T 14-09-2016 ccrud_RS13500 66d39b049e9a26ff812f1998513e5b2f 98 TIGRFAM TIGR00166 S6: ribosomal protein bS6 4 97 3.5E-24 T 14-09-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS13500 66d39b049e9a26ff812f1998513e5b2f 98 SUPERFAMILY SSF54995 4 98 9.94E-30 T 14-09-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS10240 99dc8c810b406866d3d66d01f4e6abb8 368 Gene3D G3DSA:3.50.50.60 4 80 4.8E-22 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10240 99dc8c810b406866d3d66d01f4e6abb8 368 Gene3D G3DSA:3.50.50.60 131 207 4.8E-22 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10240 99dc8c810b406866d3d66d01f4e6abb8 368 TIGRFAM TIGR03364 HpnW_proposed: FAD dependent oxidoreductase TIGR03364 5 362 1.9E-117 T 14-09-2016 IPR017741 FAD-dependent oxidoreductase, HpnW ccrud_RS10240 99dc8c810b406866d3d66d01f4e6abb8 368 SUPERFAMILY SSF51905 4 208 1.12E-30 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10240 99dc8c810b406866d3d66d01f4e6abb8 368 SUPERFAMILY SSF51905 262 312 1.12E-30 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10240 99dc8c810b406866d3d66d01f4e6abb8 368 Pfam PF01266 FAD dependent oxidoreductase 5 363 6.1E-25 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ccrud_RS10240 99dc8c810b406866d3d66d01f4e6abb8 368 PANTHER PTHR13847 2 202 7.4E-18 T 14-09-2016 ccrud_RS12555 3b04e534cecada1cb425a4c5518a6734 348 SUPERFAMILY SSF51679 16 329 2.88E-51 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS12555 3b04e534cecada1cb425a4c5518a6734 348 Pfam PF00296 Luciferase-like monooxygenase 1 256 1.9E-23 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS12555 3b04e534cecada1cb425a4c5518a6734 348 Gene3D G3DSA:3.20.20.30 16 338 3.0E-57 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS12555 3b04e534cecada1cb425a4c5518a6734 348 PANTHER PTHR30137 1 344 6.2E-107 T 14-09-2016 ccrud_RS12555 3b04e534cecada1cb425a4c5518a6734 348 PANTHER PTHR30137:SF3 1 344 6.2E-107 T 14-09-2016 ccrud_RS11685 296de80bfddeb0d986ffdf9e886594e9 81 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 11 74 4.0E-29 T 14-09-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11685 296de80bfddeb0d986ffdf9e886594e9 81 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 2 76 18.969 T 14-09-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11685 296de80bfddeb0d986ffdf9e886594e9 81 SUPERFAMILY SSF82697 3 74 2.44E-22 T 14-09-2016 ccrud_RS11685 296de80bfddeb0d986ffdf9e886594e9 81 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 4 74 3.0E-25 T 14-09-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11685 296de80bfddeb0d986ffdf9e886594e9 81 Gene3D G3DSA:3.30.1280.10 3 75 2.8E-29 T 14-09-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11685 296de80bfddeb0d986ffdf9e886594e9 81 PANTHER PTHR34696 1 74 4.0E-25 T 14-09-2016 ccrud_RS11685 296de80bfddeb0d986ffdf9e886594e9 81 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 4 75 2.1E-15 T 14-09-2016 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 SUPERFAMILY SSF50891 7 172 2.34E-61 T 14-09-2016 IPR029000 Cyclophilin-like domain ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 57 74 - T 14-09-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 21 36 2.8E-25 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 117 2.8E-25 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 62 74 2.8E-25 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 145 2.8E-25 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 129 2.8E-25 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 PIRSF PIRSF001467 1 174 3.4E-57 T 14-09-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 Gene3D G3DSA:2.40.100.10 3 173 1.9E-61 T 14-09-2016 IPR029000 Cyclophilin-like domain ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 PANTHER PTHR11071 3 172 3.8E-73 T 14-09-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 ccrud_RS00135 53c1012ab8f65e13fd00dca72c4c6245 174 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 9 171 1.8E-45 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 ccrud_RS12865 0f6e1b3d25e4a65115f29ab4605e803a 396 PANTHER PTHR30466 7 160 8.9E-30 T 14-09-2016 ccrud_RS12865 0f6e1b3d25e4a65115f29ab4605e803a 396 Pfam PF01613 Flavin reductase like domain 18 162 1.6E-28 T 14-09-2016 IPR002563 Flavin reductase like domain GO:0010181 ccrud_RS12865 0f6e1b3d25e4a65115f29ab4605e803a 396 PANTHER PTHR30466:SF1 7 160 8.9E-30 T 14-09-2016 ccrud_RS12865 0f6e1b3d25e4a65115f29ab4605e803a 396 SMART SM00903 18 162 1.5E-42 T 14-09-2016 IPR002563 Flavin reductase like domain GO:0010181 ccrud_RS12865 0f6e1b3d25e4a65115f29ab4605e803a 396 Gene3D G3DSA:2.30.110.10 6 161 1.3E-44 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 ccrud_RS12865 0f6e1b3d25e4a65115f29ab4605e803a 396 SUPERFAMILY SSF50475 9 162 2.31E-40 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 ccrud_RS12865 0f6e1b3d25e4a65115f29ab4605e803a 396 Gene3D G3DSA:3.30.450.40 183 285 4.6E-4 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS12865 0f6e1b3d25e4a65115f29ab4605e803a 396 Gene3D G3DSA:3.30.450.40 335 390 4.6E-4 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 SUPERFAMILY SSF55957 441 553 6.54E-21 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 SUPERFAMILY SSF53738 24 243 2.55E-45 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 2 553 2.4E-280 T 14-09-2016 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|MetaCyc: PWY-7343 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 Gene3D G3DSA:3.40.120.10 234 317 2.5E-45 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 SUPERFAMILY SSF53738 217 324 2.47E-7 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 Gene3D G3DSA:3.40.120.10 29 233 9.5E-56 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 329 448 5.7E-28 T 14-09-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 Gene3D G3DSA:3.40.120.10 318 452 1.8E-34 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 PANTHER PTHR22573:SF52 17 554 1.2E-270 T 14-09-2016 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 SUPERFAMILY SSF53738 314 456 7.06E-32 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 39 188 7.0E-34 T 14-09-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 149 158 - T 14-09-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 Gene3D G3DSA:3.30.310.50 475 552 5.4E-30 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 219 323 1.0E-12 T 14-09-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 PANTHER PTHR22573 17 554 1.2E-270 T 14-09-2016 ccrud_RS11410 da12365abf554c32fde313910b0f602b 554 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 488 546 6.1E-9 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS04440 b00c5e8baaf44153843a45ba0b912aba 445 SUPERFAMILY SSF51735 15 152 5.09E-19 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04440 b00c5e8baaf44153843a45ba0b912aba 445 SMART SM00858 359 424 0.003 T 14-09-2016 IPR013974 SAF domain ccrud_RS04440 b00c5e8baaf44153843a45ba0b912aba 445 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 17 124 2.2E-7 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 ccrud_RS04440 b00c5e8baaf44153843a45ba0b912aba 445 PANTHER PTHR37850:SF2 1 444 4.4E-132 T 14-09-2016 ccrud_RS04440 b00c5e8baaf44153843a45ba0b912aba 445 Gene3D G3DSA:3.40.50.720 12 201 4.4E-18 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04440 b00c5e8baaf44153843a45ba0b912aba 445 PANTHER PTHR37850 1 444 4.4E-132 T 14-09-2016 ccrud_RS04445 b00c5e8baaf44153843a45ba0b912aba 445 SUPERFAMILY SSF51735 15 152 5.09E-19 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04445 b00c5e8baaf44153843a45ba0b912aba 445 SMART SM00858 359 424 0.003 T 14-09-2016 IPR013974 SAF domain ccrud_RS04445 b00c5e8baaf44153843a45ba0b912aba 445 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 17 124 2.2E-7 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 ccrud_RS04445 b00c5e8baaf44153843a45ba0b912aba 445 PANTHER PTHR37850:SF2 1 444 4.4E-132 T 14-09-2016 ccrud_RS04445 b00c5e8baaf44153843a45ba0b912aba 445 Gene3D G3DSA:3.40.50.720 12 201 4.4E-18 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04445 b00c5e8baaf44153843a45ba0b912aba 445 PANTHER PTHR37850 1 444 4.4E-132 T 14-09-2016 ccrud_RS07070 0ca92f30bb8668ecc5f0f5be7e9b4990 277 Gene3D G3DSA:1.10.3720.10 70 265 5.7E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS07070 0ca92f30bb8668ecc5f0f5be7e9b4990 277 SUPERFAMILY SSF161098 73 255 4.58E-30 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS07070 0ca92f30bb8668ecc5f0f5be7e9b4990 277 PANTHER PTHR30043 12 271 1.6E-61 T 14-09-2016 ccrud_RS07070 0ca92f30bb8668ecc5f0f5be7e9b4990 277 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 264 2.0E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS07070 0ca92f30bb8668ecc5f0f5be7e9b4990 277 PANTHER PTHR30043:SF1 12 271 1.6E-61 T 14-09-2016 ccrud_RS07070 0ca92f30bb8668ecc5f0f5be7e9b4990 277 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 17 265 2.1E-79 T 14-09-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 18 28 - T 14-09-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 Gene3D G3DSA:3.40.50.1270 191 393 1.5E-78 T 14-09-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 Pfam PF00162 Phosphoglycerate kinase 13 395 2.1E-139 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PRINTS PR00477 Phosphoglycerate kinase family signature 113 128 2.5E-75 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PRINTS PR00477 Phosphoglycerate kinase family signature 148 170 2.5E-75 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PRINTS PR00477 Phosphoglycerate kinase family signature 13 29 2.5E-75 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PRINTS PR00477 Phosphoglycerate kinase family signature 35 57 2.5E-75 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PRINTS PR00477 Phosphoglycerate kinase family signature 357 368 2.5E-75 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PRINTS PR00477 Phosphoglycerate kinase family signature 201 220 2.5E-75 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PRINTS PR00477 Phosphoglycerate kinase family signature 320 345 2.5E-75 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PRINTS PR00477 Phosphoglycerate kinase family signature 381 398 2.5E-75 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PRINTS PR00477 Phosphoglycerate kinase family signature 178 200 2.5E-75 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PIRSF PIRSF000724 1 405 1.5E-131 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 Gene3D G3DSA:3.40.50.1260 7 190 5.4E-60 T 14-09-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 9 405 39.876 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 PANTHER PTHR11406 1 403 1.1E-181 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS07670 3ac0341e9d35a55ae9fc3172cf1e173f 405 SUPERFAMILY SSF53748 7 404 5.06E-139 T 14-09-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 87 96 - T 14-09-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 Pfam PF07687 Peptidase dimerisation domain 208 354 1.2E-16 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 Gene3D G3DSA:3.30.70.360 205 360 1.8E-39 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 Pfam PF01546 Peptidase family M20/M25/M40 88 451 2.7E-29 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 PANTHER PTHR11014 5 457 1.4E-81 T 14-09-2016 ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 Gene3D G3DSA:3.40.630.10 367 456 3.5E-53 T 14-09-2016 ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 Gene3D G3DSA:3.40.630.10 7 199 3.5E-53 T 14-09-2016 ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 PANTHER PTHR11014:SF15 5 457 1.4E-81 T 14-09-2016 ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 SUPERFAMILY SSF53187 7 205 2.12E-50 T 14-09-2016 ccrud_RS12310 3e9a5b16ccef3063b7fb31ab0a3bbb6b 457 SUPERFAMILY SSF53187 368 456 2.12E-50 T 14-09-2016 ccrud_RS12400 5a9954c3b25529e646acb7a965a8dae5 272 PANTHER PTHR13774 4 270 1.1E-93 T 14-09-2016 ccrud_RS12400 5a9954c3b25529e646acb7a965a8dae5 272 PANTHER PTHR13774:SF18 4 270 1.1E-93 T 14-09-2016 ccrud_RS12400 5a9954c3b25529e646acb7a965a8dae5 272 Gene3D G3DSA:3.10.310.10 2 118 2.5E-42 T 14-09-2016 ccrud_RS12400 5a9954c3b25529e646acb7a965a8dae5 272 PIRSF PIRSF016184 1 272 2.9E-68 T 14-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- ccrud_RS12400 5a9954c3b25529e646acb7a965a8dae5 272 Pfam PF02567 Phenazine biosynthesis-like protein 8 264 3.5E-55 T 14-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- ccrud_RS12400 5a9954c3b25529e646acb7a965a8dae5 272 Gene3D G3DSA:3.10.310.10 124 261 1.7E-36 T 14-09-2016 ccrud_RS12400 5a9954c3b25529e646acb7a965a8dae5 272 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 254 2.3E-53 T 14-09-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- ccrud_RS12400 5a9954c3b25529e646acb7a965a8dae5 272 SUPERFAMILY SSF54506 1 270 8.9E-72 T 14-09-2016 ccrud_RS04310 32927250f4195c00b132e7bf61c0ed23 57 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 36 1.7E-9 T 14-09-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 ccrud_RS04310 32927250f4195c00b132e7bf61c0ed23 57 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 53 13.184 T 14-09-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 ccrud_RS04310 32927250f4195c00b132e7bf61c0ed23 57 SUPERFAMILY SSF57829 1 39 3.78E-8 T 14-09-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 ccrud_RS04310 32927250f4195c00b132e7bf61c0ed23 57 Pfam PF01783 Ribosomal L32p protein family 2 46 1.9E-11 T 14-09-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 Gene3D G3DSA:3.30.70.120 1 112 2.2E-47 T 14-09-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 14-09-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 14-09-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 PANTHER PTHR30115 1 112 5.2E-59 T 14-09-2016 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 SMART SM00938 4 105 1.1E-56 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 SUPERFAMILY SSF54913 1 112 1.91E-42 T 14-09-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 8.4E-41 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 PRINTS PR00340 P-II protein signature 23 41 1.0E-38 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 PRINTS PR00340 P-II protein signature 83 103 1.0E-38 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 PRINTS PR00340 P-II protein signature 52 75 1.0E-38 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 PRINTS PR00340 P-II protein signature 2 17 1.0E-38 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ccrud_RS08990 861841f5f2a5dc4286e748e257a5d87b 112 PIRSF PIRSF039144 1 112 1.5E-54 T 14-09-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 PRINTS PR00775 90kDa heat shock protein signature 26 48 8.7E-12 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 PRINTS PR00775 90kDa heat shock protein signature 108 130 8.7E-12 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 PRINTS PR00775 90kDa heat shock protein signature 5 25 8.7E-12 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 PRINTS PR00775 90kDa heat shock protein signature 180 198 8.7E-12 T 14-09-2016 IPR020575 Heat shock protein Hsp90, N-terminal ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 PANTHER PTHR11528:SF26 8 580 1.6E-48 T 14-09-2016 ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 PANTHER PTHR11528 8 580 1.6E-48 T 14-09-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 SUPERFAMILY SSF55874 8 207 2.1E-40 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 Gene3D G3DSA:3.30.565.10 8 204 6.1E-41 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 136 1.2E-10 T 14-09-2016 ccrud_RS00545 52f970b39d8dca0348210fb1150d4175 608 SUPERFAMILY SSF54211 224 434 1.97E-29 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS07590 6bea7d775ad03eb686e2b019c9a889f2 338 PANTHER PTHR24220:SF414 33 285 8.5E-108 T 14-09-2016 ccrud_RS07590 6bea7d775ad03eb686e2b019c9a889f2 338 SMART SM00382 56 234 3.9E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS07590 6bea7d775ad03eb686e2b019c9a889f2 338 Gene3D G3DSA:3.40.50.300 28 254 2.1E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07590 6bea7d775ad03eb686e2b019c9a889f2 338 Pfam PF00005 ABC transporter 49 186 4.8E-26 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS07590 6bea7d775ad03eb686e2b019c9a889f2 338 SUPERFAMILY SSF52540 25 256 3.65E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07590 6bea7d775ad03eb686e2b019c9a889f2 338 PANTHER PTHR24220 33 285 8.5E-108 T 14-09-2016 ccrud_RS07590 6bea7d775ad03eb686e2b019c9a889f2 338 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS06845 4add915855fe2f3fdd80616ff2d912b4 236 Gene3D G3DSA:3.40.50.300 13 228 5.2E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06845 4add915855fe2f3fdd80616ff2d912b4 236 SUPERFAMILY SSF52540 11 229 4.26E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06845 4add915855fe2f3fdd80616ff2d912b4 236 Hamap MF_00238 Cytidylate kinase [cmk]. 12 231 30.846 T 14-09-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 ccrud_RS06845 4add915855fe2f3fdd80616ff2d912b4 236 Pfam PF02224 Cytidylate kinase 14 228 4.4E-72 T 14-09-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 ccrud_RS06845 4add915855fe2f3fdd80616ff2d912b4 236 PANTHER PTHR21299 13 229 4.3E-52 T 14-09-2016 ccrud_RS06845 4add915855fe2f3fdd80616ff2d912b4 236 TIGRFAM TIGR00017 cmk: cytidylate kinase 12 226 9.2E-66 T 14-09-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 ccrud_RS01670 ed891fdd9fdad3f03bdea27e9ddf5617 403 Gene3D G3DSA:1.20.1250.20 12 204 2.3E-18 T 14-09-2016 ccrud_RS01670 ed891fdd9fdad3f03bdea27e9ddf5617 403 Gene3D G3DSA:1.20.1250.20 236 399 3.1E-8 T 14-09-2016 ccrud_RS01670 ed891fdd9fdad3f03bdea27e9ddf5617 403 ProSitePatterns PS00216 Sugar transport proteins signature 1. 68 84 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS01670 ed891fdd9fdad3f03bdea27e9ddf5617 403 Pfam PF07690 Major Facilitator Superfamily 19 364 1.1E-21 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS01670 ed891fdd9fdad3f03bdea27e9ddf5617 403 SUPERFAMILY SSF103473 7 401 8.24E-35 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS06035 57d4036fee4384e90316b56d64dc3845 314 Gene3D G3DSA:3.40.50.2300 156 313 1.3E-52 T 14-09-2016 ccrud_RS06035 57d4036fee4384e90316b56d64dc3845 314 Gene3D G3DSA:3.40.50.2300 40 155 2.1E-38 T 14-09-2016 ccrud_RS06035 57d4036fee4384e90316b56d64dc3845 314 PANTHER PTHR32196 40 305 7.0E-74 T 14-09-2016 ccrud_RS06035 57d4036fee4384e90316b56d64dc3845 314 PANTHER PTHR32196:SF9 40 305 7.0E-74 T 14-09-2016 ccrud_RS06035 57d4036fee4384e90316b56d64dc3845 314 SUPERFAMILY SSF53822 40 313 3.47E-85 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS06035 57d4036fee4384e90316b56d64dc3845 314 Pfam PF13407 Periplasmic binding protein domain 40 293 4.3E-64 T 14-09-2016 IPR025997 Periplasmic binding protein ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 Gene3D G3DSA:3.40.50.1480 6 237 5.3E-139 T 14-09-2016 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 Gene3D G3DSA:3.40.50.1480 399 478 5.3E-139 T 14-09-2016 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 7 470 1.1E-192 T 14-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 6 477 1.8E-142 T 14-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 2 470 48.7 T 14-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 PIRSF PIRSF001109 1 478 4.9E-189 T 14-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 78 92 - T 14-09-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 SMART SM00996 6 477 1.2E-299 T 14-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 SUPERFAMILY SSF52283 188 235 3.85E-111 T 14-09-2016 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 SUPERFAMILY SSF52283 4 150 3.85E-111 T 14-09-2016 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 SUPERFAMILY SSF52283 399 478 3.85E-111 T 14-09-2016 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 SUPERFAMILY SSF51735 236 398 1.62E-69 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 258 274 - T 14-09-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 SMART SM00997 236 398 3.5E-103 T 14-09-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 Gene3D G3DSA:3.40.50.720 238 397 4.7E-48 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 236 398 5.2E-76 T 14-09-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 PANTHER PTHR23420 5 148 0.0 T 14-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS03660 1a466224e01f4ca51e3c8f4c0d931fd4 478 PANTHER PTHR23420 186 478 0.0 T 14-09-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 PANTHER PTHR32282 6 779 0.0 T 14-09-2016 ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 SUPERFAMILY SSF52540 10 58 5.09E-32 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 SUPERFAMILY SSF52540 300 446 5.09E-32 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 Gene3D G3DSA:1.20.1580.10 98 174 9.3E-32 T 14-09-2016 ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 Gene3D G3DSA:1.20.1580.10 288 353 9.3E-32 T 14-09-2016 ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 SMART SM00382 29 440 4.3 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 SMART SM00382 503 748 0.25 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 Gene3D G3DSA:1.20.1580.10 541 663 3.1E-32 T 14-09-2016 ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 SUPERFAMILY SSF52540 485 752 4.47E-37 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 SUPERFAMILY SSF52540 10 135 3.19E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 Gene3D G3DSA:1.10.8.280 178 287 3.5E-7 T 14-09-2016 ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 Gene3D G3DSA:3.40.50.300 354 470 1.5E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 Gene3D G3DSA:3.40.50.300 664 771 1.0E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 Gene3D G3DSA:3.40.50.300 479 537 1.0E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 Gene3D G3DSA:3.40.50.300 4 57 1.5E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 Pfam PF00005 ABC transporter 494 700 2.6E-12 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05235 11c864c9f2480579e09fee99ef60c8c6 780 PANTHER PTHR32282:SF10 6 779 0.0 T 14-09-2016 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 TIGRFAM TIGR01995 PTS-II-ABC-beta: PTS system, beta-glucoside-specific IIABC component 7 652 8.7E-205 T 14-09-2016 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component GO:0005886|GO:0008982|GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 SUPERFAMILY SSF51261 505 653 1.12E-49 T 14-09-2016 IPR011055 Duplicated hybrid motif ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 PANTHER PTHR30175 486 604 1.2E-195 T 14-09-2016 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 23 40 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 PANTHER PTHR30175:SF1 1 469 1.2E-195 T 14-09-2016 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 Gene3D G3DSA:2.70.70.10 502 653 1.4E-53 T 14-09-2016 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 510 629 3.5E-41 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 PANTHER PTHR30175:SF1 486 604 1.2E-195 T 14-09-2016 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 ProSitePatterns PS00371 PTS EIIA domains phosphorylation site signature 1. 571 583 - T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 Pfam PF02378 Phosphotransferase system, EIIC 110 406 1.5E-27 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 Pfam PF00367 phosphotransferase system, EIIB 13 45 1.6E-13 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 SUPERFAMILY SSF55604 12 81 7.45E-21 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 Gene3D G3DSA:3.30.1360.60 6 81 5.3E-26 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 PANTHER PTHR30175 1 469 1.2E-195 T 14-09-2016 ccrud_RS12210 6ea13daf43c738c356c7b95f9a0c8ff5 670 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 508 632 7.2E-46 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS07440 b318627043d31bb72a8521e429ea924f 363 PANTHER PTHR23408 37 360 3.3E-148 T 14-09-2016 ccrud_RS07440 b318627043d31bb72a8521e429ea924f 363 PANTHER PTHR23408:SF17 37 360 3.3E-148 T 14-09-2016 ccrud_RS07440 b318627043d31bb72a8521e429ea924f 363 Gene3D G3DSA:1.20.5.170 35 89 4.2E-21 T 14-09-2016 ccrud_RS07440 b318627043d31bb72a8521e429ea924f 363 SUPERFAMILY SSF52540 40 360 3.47E-88 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07440 b318627043d31bb72a8521e429ea924f 363 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 53 357 7.1E-107 T 14-09-2016 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 ccrud_RS07440 b318627043d31bb72a8521e429ea924f 363 Pfam PF03308 ArgK protein 57 326 3.4E-104 T 14-09-2016 ccrud_RS07440 b318627043d31bb72a8521e429ea924f 363 Gene3D G3DSA:3.40.50.300 90 293 3.0E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 5 320 3.3E-88 T 14-09-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 PANTHER PTHR11079 3 219 6.2E-36 T 14-09-2016 ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 SUPERFAMILY SSF53927 6 124 1.47E-32 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 SUPERFAMILY SSF53597 142 323 8.38E-45 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 Pfam PF01872 RibD C-terminal domain 144 320 1.1E-41 T 14-09-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 Gene3D G3DSA:3.40.140.10 15 122 3.1E-22 T 14-09-2016 ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 Gene3D G3DSA:3.40.430.10 123 234 4.2E-31 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 Gene3D G3DSA:3.40.430.10 241 327 6.3E-21 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 PANTHER PTHR11079:SF10 3 219 6.2E-36 T 14-09-2016 ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 51 89 - T 14-09-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 ccrud_RS07720 7e0283983e074bd57e0beeaf171de54c 329 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 8 100 2.9E-14 T 14-09-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 ccrud_RS02690 8f3e94498c1bbd484ba3ea73b47318cf 500 Gene3D G3DSA:3.40.810.20 230 494 1.1E-66 T 14-09-2016 ccrud_RS02690 8f3e94498c1bbd484ba3ea73b47318cf 500 SUPERFAMILY SSF100950 3 226 6.09E-68 T 14-09-2016 ccrud_RS02690 8f3e94498c1bbd484ba3ea73b47318cf 500 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 333 466 5.5E-37 T 14-09-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain ccrud_RS02690 8f3e94498c1bbd484ba3ea73b47318cf 500 PANTHER PTHR21432:SF10 1 499 1.7E-229 T 14-09-2016 ccrud_RS02690 8f3e94498c1bbd484ba3ea73b47318cf 500 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 8 220 2.2E-34 T 14-09-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 ccrud_RS02690 8f3e94498c1bbd484ba3ea73b47318cf 500 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 11 498 6.4E-225 T 14-09-2016 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 ccrud_RS02690 8f3e94498c1bbd484ba3ea73b47318cf 500 Gene3D G3DSA:3.40.1080.10 10 225 4.2E-45 T 14-09-2016 ccrud_RS02690 8f3e94498c1bbd484ba3ea73b47318cf 500 PANTHER PTHR21432 1 499 1.7E-229 T 14-09-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 ccrud_RS02690 8f3e94498c1bbd484ba3ea73b47318cf 500 SUPERFAMILY SSF100950 229 499 3.22E-74 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 Pfam PF01494 FAD binding domain 33 406 2.3E-68 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 PANTHER PTHR13789:SF87 10 478 2.5E-126 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 357 373 9.8E-33 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 201 216 9.8E-33 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 34 56 9.8E-33 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 375 393 9.8E-33 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 393 409 9.8E-33 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 342 357 9.8E-33 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 SUPERFAMILY SSF54373 225 325 3.1E-28 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 SUPERFAMILY SSF52833 448 623 6.26E-41 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS12075 9f21e5c37eb779788893135454035352 630 Gene3D G3DSA:3.40.30.20 443 618 1.6E-36 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 SUPERFAMILY SSF51905 319 428 6.33E-45 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 SUPERFAMILY SSF51905 33 222 6.33E-45 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 Pfam PF07976 Phenol hydroxylase, C-terminal dimerisation domain 438 568 5.0E-20 T 14-09-2016 IPR012941 Phenol hydroxylase, C-terminal dimerisation domain ccrud_RS12075 9f21e5c37eb779788893135454035352 630 Gene3D G3DSA:3.50.50.60 32 212 2.8E-44 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 Gene3D G3DSA:3.50.50.60 340 380 2.8E-44 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 Gene3D G3DSA:3.30.9.10 390 442 1.2E-57 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 Gene3D G3DSA:3.30.9.10 213 325 1.2E-57 T 14-09-2016 ccrud_RS12075 9f21e5c37eb779788893135454035352 630 PANTHER PTHR13789 10 478 2.5E-126 T 14-09-2016 ccrud_RS04450 ee9d9640babd1ee5e4d96ba6f724526a 340 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 46 325 1.1E-69 T 14-09-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 ccrud_RS04450 ee9d9640babd1ee5e4d96ba6f724526a 340 PIRSF PIRSF006470 12 338 2.8E-74 T 14-09-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 ccrud_RS04450 ee9d9640babd1ee5e4d96ba6f724526a 340 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 46 299 6.1E-59 T 14-09-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 ccrud_RS04450 ee9d9640babd1ee5e4d96ba6f724526a 340 PANTHER PTHR33376 3 339 1.0E-62 T 14-09-2016 ccrud_RS02580 7d249fe500cbb19678f1df6d70de5472 155 Pfam PF00177 Ribosomal protein S7p/S5e 2 148 6.0E-60 T 14-09-2016 IPR023798 Ribosomal protein S7 domain ccrud_RS02580 7d249fe500cbb19678f1df6d70de5472 155 PANTHER PTHR11205 1 155 2.7E-83 T 14-09-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 ccrud_RS02580 7d249fe500cbb19678f1df6d70de5472 155 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 2 155 1.5E-64 T 14-09-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 ccrud_RS02580 7d249fe500cbb19678f1df6d70de5472 155 PIRSF PIRSF002122 2 155 2.0E-56 T 14-09-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 ccrud_RS02580 7d249fe500cbb19678f1df6d70de5472 155 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 155 33.601 T 14-09-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 ccrud_RS02580 7d249fe500cbb19678f1df6d70de5472 155 Gene3D G3DSA:1.10.455.10 7 155 3.2E-62 T 14-09-2016 IPR023798 Ribosomal protein S7 domain ccrud_RS02580 7d249fe500cbb19678f1df6d70de5472 155 ProSitePatterns PS00052 Ribosomal protein S7 signature. 19 45 - T 14-09-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 ccrud_RS02580 7d249fe500cbb19678f1df6d70de5472 155 SUPERFAMILY SSF47973 5 148 4.45E-58 T 14-09-2016 IPR023798 Ribosomal protein S7 domain ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 PANTHER PTHR11632:SF59 4 129 9.3E-165 T 14-09-2016 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 PANTHER PTHR11632:SF59 201 561 9.3E-165 T 14-09-2016 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 Gene3D G3DSA:3.90.700.10 342 497 6.9E-33 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.6E-5 T 14-09-2016 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 1.6E-5 T 14-09-2016 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 Pfam PF00890 FAD binding domain 6 546 4.8E-107 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.4E-8 T 14-09-2016 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 204 229 2.4E-8 T 14-09-2016 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 Gene3D G3DSA:3.50.50.60 501 562 8.8E-69 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 Gene3D G3DSA:3.50.50.60 3 152 8.8E-69 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 Gene3D G3DSA:3.50.50.60 208 317 8.8E-69 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 PANTHER PTHR11632 4 129 9.3E-165 T 14-09-2016 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 PANTHER PTHR11632 201 561 9.3E-165 T 14-09-2016 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 SUPERFAMILY SSF51905 201 322 8.29E-44 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 SUPERFAMILY SSF51905 2 116 8.29E-44 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 SUPERFAMILY SSF51905 504 562 8.29E-44 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11885 188ea723418215efc1d5563c8675c57d 563 SUPERFAMILY SSF56425 339 505 4.88E-35 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS02345 b0e3af0fdcd9b40a27bcf6c02658a2b7 164 SUPERFAMILY SSF54427 8 146 2.8E-25 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS02345 b0e3af0fdcd9b40a27bcf6c02658a2b7 164 Pfam PF13577 SnoaL-like domain 9 137 7.7E-19 T 14-09-2016 IPR009959 Polyketide cyclase SnoaL-like domain ccrud_RS02345 b0e3af0fdcd9b40a27bcf6c02658a2b7 164 Gene3D G3DSA:3.10.450.50 10 143 2.4E-24 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS08210 08a444f4f83d55d02c7887c2d54adb43 150 Pfam PF00692 dUTPase 16 146 1.3E-32 T 14-09-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 ccrud_RS08210 08a444f4f83d55d02c7887c2d54adb43 150 PANTHER PTHR11241:SF0 7 150 1.5E-50 T 14-09-2016 ccrud_RS08210 08a444f4f83d55d02c7887c2d54adb43 150 SUPERFAMILY SSF51283 7 147 8.24E-47 T 14-09-2016 IPR029054 dUTPase-like ccrud_RS08210 08a444f4f83d55d02c7887c2d54adb43 150 Gene3D G3DSA:2.70.40.10 7 147 1.3E-54 T 14-09-2016 IPR029054 dUTPase-like ccrud_RS08210 08a444f4f83d55d02c7887c2d54adb43 150 TIGRFAM TIGR00576 dut: dUTP diphosphatase 7 147 1.9E-51 T 14-09-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 ccrud_RS08210 08a444f4f83d55d02c7887c2d54adb43 150 PANTHER PTHR11241 7 150 1.5E-50 T 14-09-2016 ccrud_RS08210 08a444f4f83d55d02c7887c2d54adb43 150 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 5 147 30.749 T 14-09-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 ccrud_RS05980 cfa41512f573374a7954106494292194 680 Gene3D G3DSA:1.10.287.610 5 69 5.8E-23 T 14-09-2016 ccrud_RS05980 cfa41512f573374a7954106494292194 680 SUPERFAMILY SSF56091 6 318 3.91E-104 T 14-09-2016 ccrud_RS05980 cfa41512f573374a7954106494292194 680 SUPERFAMILY SSF47781 403 591 1.41E-48 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 ccrud_RS05980 cfa41512f573374a7954106494292194 680 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 321 398 3.4E-30 T 14-09-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 ccrud_RS05980 cfa41512f573374a7954106494292194 680 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 602 672 1.6E-12 T 14-09-2016 IPR001357 BRCT domain ccrud_RS05980 cfa41512f573374a7954106494292194 680 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 331 346 - T 14-09-2016 IPR033136 NAD-dependent DNA ligase, conserved site ccrud_RS05980 cfa41512f573374a7954106494292194 680 PANTHER PTHR23389:SF9 2 539 2.4E-158 T 14-09-2016 ccrud_RS05980 cfa41512f573374a7954106494292194 680 PIRSF PIRSF001604 1 678 6.1E-221 T 14-09-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 ccrud_RS05980 cfa41512f573374a7954106494292194 680 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 113 142 - T 14-09-2016 IPR018239 NAD-dependent DNA ligase, active site ccrud_RS05980 cfa41512f573374a7954106494292194 680 Gene3D G3DSA:1.10.150.20 436 509 6.1E-11 T 14-09-2016 ccrud_RS05980 cfa41512f573374a7954106494292194 680 Pfam PF12826 Helix-hairpin-helix motif 517 580 6.1E-22 T 14-09-2016 ccrud_RS05980 cfa41512f573374a7954106494292194 680 Gene3D G3DSA:2.40.50.140 320 390 9.1E-29 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS05980 cfa41512f573374a7954106494292194 680 SUPERFAMILY SSF52113 599 676 3.92E-17 T 14-09-2016 IPR001357 BRCT domain ccrud_RS05980 cfa41512f573374a7954106494292194 680 PANTHER PTHR23389 2 539 2.4E-158 T 14-09-2016 ccrud_RS05980 cfa41512f573374a7954106494292194 680 SMART SM00292 599 676 3.1E-12 T 14-09-2016 IPR001357 BRCT domain ccrud_RS05980 cfa41512f573374a7954106494292194 680 Gene3D G3DSA:3.40.50.10190 599 678 1.1E-23 T 14-09-2016 IPR001357 BRCT domain ccrud_RS05980 cfa41512f573374a7954106494292194 680 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 15 668 6.0E-221 T 14-09-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 ccrud_RS05980 cfa41512f573374a7954106494292194 680 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 9 318 7.7E-108 T 14-09-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 ccrud_RS05980 cfa41512f573374a7954106494292194 680 SUPERFAMILY SSF50249 317 400 5.82E-26 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS05980 cfa41512f573374a7954106494292194 680 Gene3D G3DSA:1.10.150.20 511 592 7.4E-26 T 14-09-2016 ccrud_RS05980 cfa41512f573374a7954106494292194 680 SMART SM00532 7 449 3.0E-226 T 14-09-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 ccrud_RS05980 cfa41512f573374a7954106494292194 680 Hamap MF_01588 DNA ligase [ligA]. 6 673 48.523 T 14-09-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 ccrud_RS05980 cfa41512f573374a7954106494292194 680 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 408 434 1.5E-6 T 14-09-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 ccrud_RS05980 cfa41512f573374a7954106494292194 680 Gene3D G3DSA:3.30.470.30 117 252 2.0E-45 T 14-09-2016 ccrud_RS04350 7df63867e4d2df476821cbd8df24715d 190 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 5 182 1.1E-32 T 14-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase ccrud_RS04350 7df63867e4d2df476821cbd8df24715d 190 SUPERFAMILY SSF100950 4 186 1.07E-42 T 14-09-2016 ccrud_RS04350 7df63867e4d2df476821cbd8df24715d 190 PANTHER PTHR23407 1 185 4.9E-32 T 14-09-2016 ccrud_RS04350 7df63867e4d2df476821cbd8df24715d 190 PIRSF PIRSF006806 1 185 2.5E-31 T 14-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase ccrud_RS04350 7df63867e4d2df476821cbd8df24715d 190 Gene3D G3DSA:3.40.50.10420 4 187 2.9E-44 T 14-09-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain ccrud_RS04350 7df63867e4d2df476821cbd8df24715d 190 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 5 182 7.0E-43 T 14-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase ccrud_RS04350 7df63867e4d2df476821cbd8df24715d 190 PANTHER PTHR23407:SF1 1 185 4.9E-32 T 14-09-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase ccrud_RS08630 e4e308b58184f061a97ae47a04ff652e 112 PANTHER PTHR34215 2 102 2.0E-19 T 14-09-2016 ccrud_RS08630 e4e308b58184f061a97ae47a04ff652e 112 SUPERFAMILY SSF64376 20 93 1.2E-20 T 14-09-2016 IPR007393 Domain of unknown function DUF448 ccrud_RS08630 e4e308b58184f061a97ae47a04ff652e 112 Pfam PF04296 Protein of unknown function (DUF448) 23 100 1.8E-22 T 14-09-2016 IPR007393 Domain of unknown function DUF448 ccrud_RS08630 e4e308b58184f061a97ae47a04ff652e 112 Gene3D G3DSA:3.30.1230.10 17 91 3.4E-23 T 14-09-2016 IPR007393 Domain of unknown function DUF448 ccrud_RS08630 e4e308b58184f061a97ae47a04ff652e 112 PANTHER PTHR34215:SF1 2 102 2.0E-19 T 14-09-2016 ccrud_RS11565 da5bd8774005cb661353931275a9aea2 245 PANTHER PTHR13887:SF10 10 232 2.7E-49 T 14-09-2016 ccrud_RS11565 da5bd8774005cb661353931275a9aea2 245 Pfam PF01323 DSBA-like thioredoxin domain 12 214 1.4E-45 T 14-09-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 ccrud_RS11565 da5bd8774005cb661353931275a9aea2 245 SUPERFAMILY SSF52833 8 220 2.01E-48 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11565 da5bd8774005cb661353931275a9aea2 245 Gene3D G3DSA:3.40.30.10 9 217 5.5E-51 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11565 da5bd8774005cb661353931275a9aea2 245 PANTHER PTHR13887 10 232 2.7E-49 T 14-09-2016 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 21 430 28.516 T 14-09-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 ProSitePatterns PS00885 EPSP synthase signature 2. 344 362 - T 14-09-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 PIRSF PIRSF000505 13 430 2.3E-117 T 14-09-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 PANTHER PTHR21090:SF5 22 430 1.7E-141 T 14-09-2016 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 Gene3D G3DSA:3.65.10.10 33 239 1.4E-59 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 SUPERFAMILY SSF55205 26 428 1.05E-103 T 14-09-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 Gene3D G3DSA:3.65.10.10 240 428 4.0E-57 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 PANTHER PTHR21090 22 430 1.7E-141 T 14-09-2016 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 26 429 1.6E-129 T 14-09-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 ProSitePatterns PS00104 EPSP synthase signature 1. 95 109 - T 14-09-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS03720 42c5271345b122b99a5280e66a77fcf5 430 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 20 423 6.2E-127 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 Pfam PF09339 IclR helix-turn-helix domain 13 58 3.0E-13 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 SMART SM00346 9 97 1.8E-27 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 SUPERFAMILY SSF55781 73 252 2.35E-48 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 SUPERFAMILY SSF46785 9 80 5.05E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 Pfam PF01614 Bacterial transcriptional regulator 124 250 1.2E-34 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 PANTHER PTHR30136 1 252 5.5E-82 T 14-09-2016 ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 Gene3D G3DSA:1.10.10.10 3 68 2.2E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 6 252 5.1E-97 T 14-09-2016 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 PANTHER PTHR30136:SF10 1 252 5.5E-82 T 14-09-2016 ccrud_RS10645 5d001f4f02d0b34f5755db5743f5282f 255 Gene3D G3DSA:3.30.450.40 75 252 2.5E-56 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 PANTHER PTHR13691 1 280 1.1E-139 T 14-09-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 Gene3D G3DSA:2.40.50.140 1 115 3.7E-51 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 SUPERFAMILY SSF50249 2 126 6.17E-50 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 1.6E-55 T 14-09-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 47.176 T 14-09-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 SMART SM01382 125 253 1.5E-89 T 14-09-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 Gene3D G3DSA:2.30.30.30 120 196 7.8E-31 T 14-09-2016 IPR014722 Ribosomal protein L2 domain 2 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 PIRSF PIRSF002158 4 275 5.5E-95 T 14-09-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 ProSitePatterns PS00467 Ribosomal protein L2 signature. 219 230 - T 14-09-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 3.3E-129 T 14-09-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 119 4.4E-31 T 14-09-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 SMART SM01383 42 119 1.6E-40 T 14-09-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 SUPERFAMILY SSF50104 127 271 2.05E-56 T 14-09-2016 IPR008991 Translation protein SH3-like domain ccrud_RS02620 5d778790d0035d9e5c179e4e71604ec1 280 Gene3D G3DSA:4.10.950.10 197 273 1.2E-31 T 14-09-2016 IPR014726 Ribosomal protein L2, domain 3 ccrud_RS06720 430c4df42175864644086aa191b61508 477 Gene3D G3DSA:1.10.275.10 10 115 7.8E-32 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal ccrud_RS06720 430c4df42175864644086aa191b61508 477 Pfam PF14698 Argininosuccinate lyase C-terminal 372 440 3.9E-20 T 14-09-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06720 430c4df42175864644086aa191b61508 477 TIGRFAM TIGR00838 argH: argininosuccinate lyase 11 456 4.8E-173 T 14-09-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00145 Argininosuccinate lyase family signature 284 300 1.7E-50 T 14-09-2016 ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00145 Argininosuccinate lyase family signature 240 264 1.7E-50 T 14-09-2016 ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00145 Argininosuccinate lyase family signature 319 338 1.7E-50 T 14-09-2016 ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00145 Argininosuccinate lyase family signature 110 132 1.7E-50 T 14-09-2016 ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00145 Argininosuccinate lyase family signature 202 218 1.7E-50 T 14-09-2016 ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00145 Argininosuccinate lyase family signature 151 171 1.7E-50 T 14-09-2016 ccrud_RS06720 430c4df42175864644086aa191b61508 477 ProSitePatterns PS00163 Fumarate lyases signature. 284 293 - T 14-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 ccrud_RS06720 430c4df42175864644086aa191b61508 477 Hamap MF_00006 Argininosuccinate lyase [argH]. 10 462 38.212 T 14-09-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06720 430c4df42175864644086aa191b61508 477 SUPERFAMILY SSF48557 14 462 2.04E-128 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 ccrud_RS06720 430c4df42175864644086aa191b61508 477 PANTHER PTHR11444:SF3 7 464 1.3E-194 T 14-09-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06720 430c4df42175864644086aa191b61508 477 Gene3D G3DSA:1.10.40.30 384 440 5.6E-27 T 14-09-2016 ccrud_RS06720 430c4df42175864644086aa191b61508 477 PANTHER PTHR11444 7 464 1.3E-194 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS06720 430c4df42175864644086aa191b61508 477 Pfam PF00206 Lyase 14 309 1.3E-63 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00149 Fumarate lyase superfamily signature 111 129 1.1E-23 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00149 Fumarate lyase superfamily signature 284 300 1.1E-23 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00149 Fumarate lyase superfamily signature 240 267 1.1E-23 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS06720 430c4df42175864644086aa191b61508 477 PRINTS PR00149 Fumarate lyase superfamily signature 156 174 1.1E-23 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS06720 430c4df42175864644086aa191b61508 477 Gene3D G3DSA:1.20.200.10 116 383 6.6E-95 T 14-09-2016 ccrud_RS07505 2c42f241544e0cb6f9132d683b4201b4 188 SUPERFAMILY SSF48498 89 184 1.13E-6 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS07505 2c42f241544e0cb6f9132d683b4201b4 188 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 3.8E-16 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS07505 2c42f241544e0cb6f9132d683b4201b4 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 1.6E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS07505 2c42f241544e0cb6f9132d683b4201b4 188 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 1.6E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS07505 2c42f241544e0cb6f9132d683b4201b4 188 PANTHER PTHR30055 1 181 5.2E-22 T 14-09-2016 ccrud_RS07505 2c42f241544e0cb6f9132d683b4201b4 188 Gene3D G3DSA:1.10.357.10 8 180 1.5E-29 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS07505 2c42f241544e0cb6f9132d683b4201b4 188 SUPERFAMILY SSF46689 7 74 1.08E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS06940 90f3dec1183f46106359431da8231099 268 PANTHER PTHR11040:SF56 2 262 2.2E-82 T 14-09-2016 ccrud_RS06940 90f3dec1183f46106359431da8231099 268 Hamap MF_00548 Zinc transporter ZupT [zupT]. 6 268 34.449 T 14-09-2016 IPR023498 Zinc transporter ZupT ccrud_RS06940 90f3dec1183f46106359431da8231099 268 Pfam PF02535 ZIP Zinc transporter 121 262 8.2E-21 T 14-09-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 ccrud_RS06940 90f3dec1183f46106359431da8231099 268 PANTHER PTHR11040 2 262 2.2E-82 T 14-09-2016 ccrud_RS04935 34fce3f2bccad76e47cffe73398849db 252 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 42.981 T 14-09-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF ccrud_RS04935 34fce3f2bccad76e47cffe73398849db 252 PANTHER PTHR30292 1 252 3.2E-110 T 14-09-2016 ccrud_RS04935 34fce3f2bccad76e47cffe73398849db 252 Pfam PF03746 LamB/YcsF family 4 241 2.0E-94 T 14-09-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF ccrud_RS04935 34fce3f2bccad76e47cffe73398849db 252 PANTHER PTHR30292:SF0 1 252 3.2E-110 T 14-09-2016 ccrud_RS04935 34fce3f2bccad76e47cffe73398849db 252 SUPERFAMILY SSF88713 3 248 2.74E-92 T 14-09-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 SUPERFAMILY SSF52540 324 570 7.41E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 SUPERFAMILY SSF90123 6 313 6.28E-70 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 PANTHER PTHR24221:SF190 4 570 1.4E-217 T 14-09-2016 ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 ProSitePatterns PS00211 ABC transporters family signature. 472 486 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 SMART SM00382 360 546 2.2E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 Pfam PF00664 ABC transporter transmembrane region 18 287 9.1E-43 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 Gene3D G3DSA:1.20.1560.10 6 322 4.5E-62 T 14-09-2016 ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 PANTHER PTHR24221 4 570 1.4E-217 T 14-09-2016 ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 Gene3D G3DSA:3.40.50.300 335 573 8.4E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04765 5a7ef58e901dbe41631bb22016aabec5 577 Pfam PF00005 ABC transporter 351 498 5.1E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 SUPERFAMILY SSF51569 4 340 4.1E-99 T 14-09-2016 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 158 169 - T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 86 97 - T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 PANTHER PTHR30559 1 342 5.7E-194 T 14-09-2016 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 9 340 1.4E-75 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 Pfam PF01116 Fructose-bisphosphate aldolase class-II 9 340 2.8E-82 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 PANTHER PTHR30559:SF0 1 342 5.7E-194 T 14-09-2016 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 Gene3D G3DSA:3.20.20.70 2 341 8.8E-120 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 TIGRFAM TIGR01520 FruBisAldo_II_A: fructose-bisphosphate aldolase, class II 3 340 3.9E-139 T 14-09-2016 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS12495 7b38caa9f262c28ebdd539f65abab3ed 344 PIRSF PIRSF001359 5 341 1.1E-66 T 14-09-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 PANTHER PTHR18934 38 445 1.0E-101 T 14-09-2016 ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 PIRSF PIRSF005496 12 796 4.0E-279 T 14-09-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 Pfam PF08482 ATP-dependent helicase C-terminal 654 783 2.3E-47 T 14-09-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 Gene3D G3DSA:3.40.50.300 228 368 3.5E-15 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 SMART SM00487 18 205 4.3E-17 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 Pfam PF04408 Helicase associated domain (HA2) 409 459 1.8E-7 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 SMART SM00490 251 349 1.4E-12 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 137 146 - T 14-09-2016 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site GO:0003676|GO:0005524|GO:0008026 ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 SMART SM00847 408 499 1.2E-8 T 14-09-2016 IPR007502 Helicase-associated domain GO:0004386 ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 Gene3D G3DSA:3.40.50.300 17 178 2.1E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 Pfam PF00270 DEAD/DEAH box helicase 33 180 1.0E-9 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 SUPERFAMILY SSF52540 29 360 4.63E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00740 a8dc6b0e202f3f315ee0d948d7188977 796 Pfam PF00271 Helicase conserved C-terminal domain 234 349 9.1E-11 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS01880 581010f704e7339a3cd560bbbe3ba998 273 Gene3D G3DSA:3.90.550.10 5 234 1.3E-41 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01880 581010f704e7339a3cd560bbbe3ba998 273 PANTHER PTHR22916 6 204 8.0E-37 T 14-09-2016 ccrud_RS01880 581010f704e7339a3cd560bbbe3ba998 273 SUPERFAMILY SSF53448 6 205 6.75E-43 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01880 581010f704e7339a3cd560bbbe3ba998 273 Pfam PF00535 Glycosyl transferase family 2 7 120 2.2E-30 T 14-09-2016 IPR001173 Glycosyltransferase 2-like ccrud_RS08240 2ac35f98acdb34cf9616ede99164e05e 443 PANTHER PTHR30590 9 423 7.3E-27 T 14-09-2016 ccrud_RS08240 2ac35f98acdb34cf9616ede99164e05e 443 Pfam PF04235 Protein of unknown function (DUF418) 238 409 7.8E-20 T 14-09-2016 IPR007349 Domain of unknown function DUF418 ccrud_RS11690 a3a7189a729784059cbb52a9d5782113 159 Gene3D G3DSA:3.40.30.10 3 157 8.6E-58 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11690 a3a7189a729784059cbb52a9d5782113 159 PANTHER PTHR11592 1 155 1.0E-65 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 ccrud_RS11690 a3a7189a729784059cbb52a9d5782113 159 SUPERFAMILY SSF52833 3 157 1.92E-50 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11690 a3a7189a729784059cbb52a9d5782113 159 Pfam PF00255 Glutathione peroxidase 7 111 5.1E-37 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 ccrud_RS11690 a3a7189a729784059cbb52a9d5782113 159 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 14-09-2016 IPR029759 Glutathione peroxidase active site ccrud_RS11690 a3a7189a729784059cbb52a9d5782113 159 PRINTS PR01011 Glutathione peroxidase family signature 57 73 2.9E-17 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 ccrud_RS11690 a3a7189a729784059cbb52a9d5782113 159 PRINTS PR01011 Glutathione peroxidase family signature 22 39 2.9E-17 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 ccrud_RS11690 a3a7189a729784059cbb52a9d5782113 159 PRINTS PR01011 Glutathione peroxidase family signature 119 128 2.9E-17 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 ccrud_RS11690 a3a7189a729784059cbb52a9d5782113 159 PIRSF PIRSF000303 1 158 1.4E-57 T 14-09-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 1.2E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 1.2E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 Pfam PF07702 UTRA domain 101 235 1.3E-30 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 PANTHER PTHR11751 128 152 6.1E-23 T 14-09-2016 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 PANTHER PTHR11751 13 81 6.1E-23 T 14-09-2016 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 SUPERFAMILY SSF64288 65 241 1.57E-37 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 Gene3D G3DSA:1.10.10.10 11 74 3.6E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 PANTHER PTHR11751:SF333 128 152 6.1E-23 T 14-09-2016 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 PANTHER PTHR11751:SF333 13 81 6.1E-23 T 14-09-2016 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 SMART SM00866 100 238 4.3E-26 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 SMART SM00345 18 79 3.2E-18 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 Gene3D G3DSA:3.40.1410.10 75 242 2.1E-38 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 SUPERFAMILY SSF46785 11 86 1.5E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11020 ef56795644c05b67e7bc9e88345e6cae 246 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 74 4.4E-20 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04780 ff58569e627390e6580f427784c1603d 501 PIRSF PIRSF006060 2 471 1.9E-46 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 ccrud_RS04780 ff58569e627390e6580f427784c1603d 501 PANTHER PTHR11785 9 495 3.8E-150 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 ccrud_RS04780 ff58569e627390e6580f427784c1603d 501 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 15 501 1.2E-190 T 14-09-2016 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 ccrud_RS04780 ff58569e627390e6580f427784c1603d 501 Pfam PF13520 Amino acid permease 21 440 2.2E-53 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 ccrud_RS04780 ff58569e627390e6580f427784c1603d 501 PANTHER PTHR11785:SF77 9 495 3.8E-150 T 14-09-2016 ccrud_RS06805 013228a8aa4578678f9e5990d4e9b536 223 Pfam PF00293 NUDIX domain 52 162 2.1E-13 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS06805 013228a8aa4578678f9e5990d4e9b536 223 Gene3D G3DSA:3.90.79.10 12 184 8.7E-46 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS06805 013228a8aa4578678f9e5990d4e9b536 223 PANTHER PTHR11839 12 220 1.2E-61 T 14-09-2016 ccrud_RS06805 013228a8aa4578678f9e5990d4e9b536 223 SUPERFAMILY SSF55811 13 182 2.98E-41 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS06805 013228a8aa4578678f9e5990d4e9b536 223 PANTHER PTHR11839:SF9 12 220 1.2E-61 T 14-09-2016 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 SUPERFAMILY SSF55186 69 263 3.14E-54 T 14-09-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 PRINTS PR01047 Threonyl-tRNA synthetase signature 398 421 1.2E-51 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 PRINTS PR01047 Threonyl-tRNA synthetase signature 501 529 1.2E-51 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 PRINTS PR01047 Threonyl-tRNA synthetase signature 544 557 1.2E-51 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 PRINTS PR01047 Threonyl-tRNA synthetase signature 571 583 1.2E-51 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 PRINTS PR01047 Threonyl-tRNA synthetase signature 365 393 1.2E-51 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 Gene3D G3DSA:3.30.930.10 264 567 4.9E-101 T 14-09-2016 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 199 241 1.8E-12 T 14-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 71 671 32.275 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 SUPERFAMILY SSF55681 265 563 1.34E-88 T 14-09-2016 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 SUPERFAMILY SSF52954 566 675 1.42E-26 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 PANTHER PTHR11451 44 675 1.6E-248 T 14-09-2016 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 Gene3D G3DSA:3.30.980.10 71 134 9.4E-42 T 14-09-2016 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 Gene3D G3DSA:3.30.980.10 210 246 9.4E-42 T 14-09-2016 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 Pfam PF03129 Anticodon binding domain 578 667 4.8E-15 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 Gene3D G3DSA:3.30.54.20 137 209 2.9E-9 T 14-09-2016 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 Gene3D G3DSA:3.40.50.800 568 672 1.3E-26 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 PANTHER PTHR11451:SF5 44 675 1.6E-248 T 14-09-2016 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 SMART SM00863 185 241 9.1E-16 T 14-09-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 360 566 1.2E-36 T 14-09-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS08085 1321b378b546646170c99bb489429fdd 686 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 77 665 6.8E-189 T 14-09-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 SUPERFAMILY SSF55729 20 96 5.32E-10 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 PIRSF PIRSF021524 1 292 8.4E-75 T 14-09-2016 IPR017813 Mycothiol acetyltransferase GO:0016747 ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 TIGRFAM TIGR03448 mycothiol_MshD: mycothiol synthase 10 290 4.5E-105 T 14-09-2016 IPR017813 Mycothiol acetyltransferase GO:0016747 ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 SUPERFAMILY SSF55729 164 290 1.83E-22 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 PANTHER PTHR23091:SF235 123 291 3.5E-19 T 14-09-2016 ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 Pfam PF13508 Acetyltransferase (GNAT) domain 54 102 1.7E-8 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 Pfam PF00583 Acetyltransferase (GNAT) family 206 281 7.0E-15 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 Gene3D G3DSA:3.40.630.30 164 286 4.3E-24 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 PANTHER PTHR23091 123 291 3.5E-19 T 14-09-2016 ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 Gene3D G3DSA:3.40.630.30 39 95 4.0E-9 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS11615 f0f69eb90a996d3e0e5ec2d01f878916 292 Hamap MF_01698 Mycothiol acetyltransferase [mshD]. 8 292 29.878 T 14-09-2016 IPR017813 Mycothiol acetyltransferase GO:0016747 ccrud_RS04380 4cd7281c6c15a87dec2c14fd681e6c43 135 PANTHER PTHR33452 7 134 8.8E-24 T 14-09-2016 ccrud_RS04380 4cd7281c6c15a87dec2c14fd681e6c43 135 PANTHER PTHR33452:SF1 7 134 8.8E-24 T 14-09-2016 ccrud_RS04380 4cd7281c6c15a87dec2c14fd681e6c43 135 Pfam PF07681 DoxX 10 93 4.3E-18 T 14-09-2016 IPR032808 DoxX family ccrud_RS07410 3ccb806d48e9216f1883333ca87afe87 595 Gene3D G3DSA:1.20.1560.10 26 332 9.1E-31 T 14-09-2016 ccrud_RS07410 3ccb806d48e9216f1883333ca87afe87 595 SMART SM00382 378 568 8.1E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS07410 3ccb806d48e9216f1883333ca87afe87 595 PANTHER PTHR24221 26 591 3.3E-85 T 14-09-2016 ccrud_RS07410 3ccb806d48e9216f1883333ca87afe87 595 Pfam PF00005 ABC transporter 369 522 5.3E-22 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS07410 3ccb806d48e9216f1883333ca87afe87 595 SUPERFAMILY SSF52540 352 591 8.74E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07410 3ccb806d48e9216f1883333ca87afe87 595 Gene3D G3DSA:3.40.50.300 351 586 1.4E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07410 3ccb806d48e9216f1883333ca87afe87 595 SUPERFAMILY SSF90123 26 333 1.23E-36 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS07410 3ccb806d48e9216f1883333ca87afe87 595 PANTHER PTHR24221:SF138 26 591 3.3E-85 T 14-09-2016 ccrud_RS07410 3ccb806d48e9216f1883333ca87afe87 595 Pfam PF00664 ABC transporter transmembrane region 39 303 5.1E-10 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS07055 8d51cab3fd45b79a26672ca64c201196 255 Pfam PF00005 ABC transporter 29 167 1.8E-26 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS07055 8d51cab3fd45b79a26672ca64c201196 255 PANTHER PTHR24220:SF445 23 238 3.9E-80 T 14-09-2016 ccrud_RS07055 8d51cab3fd45b79a26672ca64c201196 255 PANTHER PTHR24220 23 238 3.9E-80 T 14-09-2016 ccrud_RS07055 8d51cab3fd45b79a26672ca64c201196 255 SUPERFAMILY SSF52540 24 229 8.16E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07055 8d51cab3fd45b79a26672ca64c201196 255 SMART SM00382 38 223 4.0E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS07055 8d51cab3fd45b79a26672ca64c201196 255 Gene3D G3DSA:3.40.50.300 18 234 1.4E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09935 b712db161eee9d594442818d57484d44 89 SUPERFAMILY SSF47336 13 86 7.07E-18 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS09935 b712db161eee9d594442818d57484d44 89 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 52 86 1.0E-10 T 14-09-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 ccrud_RS09935 b712db161eee9d594442818d57484d44 89 Hamap MF_01217 Acyl carrier protein [acpP]. 13 87 15.445 T 14-09-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 ccrud_RS09935 b712db161eee9d594442818d57484d44 89 Pfam PF00550 Phosphopantetheine attachment site 17 83 5.0E-12 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS09935 b712db161eee9d594442818d57484d44 89 Gene3D G3DSA:1.10.1200.10 13 86 5.5E-20 T 14-09-2016 IPR009081 Phosphopantetheine binding ACP domain ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 SMART SM00471 73 183 2.2E-13 T 14-09-2016 IPR003607 HD/PDEase domain ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 SUPERFAMILY SSF81301 210 424 9.65E-61 T 14-09-2016 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 Gene3D G3DSA:3.30.70.260 681 753 9.0E-12 T 14-09-2016 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 Pfam PF02824 TGS domain 420 479 3.7E-21 T 14-09-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 PANTHER PTHR21262:SF0 5 758 0.0 T 14-09-2016 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 SMART SM00954 265 375 9.1E-54 T 14-09-2016 IPR007685 RelA/SpoT GO:0015969 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 SUPERFAMILY SSF55021 680 757 3.5E-12 T 14-09-2016 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 58 755 2.9E-254 T 14-09-2016 IPR004811 RelA/SpoT family GO:0015969 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 Gene3D G3DSA:3.10.20.30 419 482 4.1E-24 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 SUPERFAMILY SSF109604 34 220 1.21E-69 T 14-09-2016 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 Pfam PF13291 ACT domain 680 755 5.4E-18 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 Gene3D G3DSA:3.30.460.10 208 354 5.1E-42 T 14-09-2016 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 Pfam PF13328 HD domain 58 205 3.8E-47 T 14-09-2016 IPR003607 HD/PDEase domain ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 PANTHER PTHR21262 5 758 0.0 T 14-09-2016 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 Pfam PF04607 Region found in RelA / SpoT proteins 265 374 1.8E-32 T 14-09-2016 IPR007685 RelA/SpoT GO:0015969 ccrud_RS07995 d2dcf27b12b530eb5f5fd10505501a96 760 SUPERFAMILY SSF81271 407 479 1.26E-20 T 14-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 ProSitePatterns PS00211 ABC transporters family signature. 167 181 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 PANTHER PTHR19211 8 289 1.6E-107 T 14-09-2016 ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 PANTHER PTHR19211 315 536 1.6E-107 T 14-09-2016 ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 ProSitePatterns PS00211 ABC transporters family signature. 479 493 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 Gene3D G3DSA:3.40.50.300 143 289 1.1E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 Gene3D G3DSA:3.40.50.300 377 535 1.6E-24 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 Gene3D G3DSA:3.40.50.300 8 104 1.1E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 SUPERFAMILY SSF52540 378 537 7.83E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 SMART SM00382 32 239 1.1E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 SMART SM00382 387 547 1.1E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 SUPERFAMILY SSF52540 12 238 3.49E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 Pfam PF00005 ABC transporter 378 507 3.0E-15 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS09375 fa6933e2ea25a9299e7d3fe62d7d870c 550 Pfam PF00005 ABC transporter 23 195 8.1E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06020 32113081cd44b7070a3709cddaedfc4b 355 PANTHER PTHR30146 11 335 4.7E-92 T 14-09-2016 ccrud_RS06020 32113081cd44b7070a3709cddaedfc4b 355 Pfam PF13377 Periplasmic binding protein-like domain 189 334 9.2E-23 T 14-09-2016 ccrud_RS06020 32113081cd44b7070a3709cddaedfc4b 355 Gene3D G3DSA:3.40.50.2300 65 185 1.1E-38 T 14-09-2016 ccrud_RS06020 32113081cd44b7070a3709cddaedfc4b 355 Pfam PF00356 Bacterial regulatory proteins, lacI family 14 59 1.0E-13 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS06020 32113081cd44b7070a3709cddaedfc4b 355 SUPERFAMILY SSF53822 69 328 3.93E-63 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS06020 32113081cd44b7070a3709cddaedfc4b 355 SUPERFAMILY SSF47413 12 70 9.64E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS06020 32113081cd44b7070a3709cddaedfc4b 355 Gene3D G3DSA:3.40.50.2300 186 316 5.5E-32 T 14-09-2016 ccrud_RS06020 32113081cd44b7070a3709cddaedfc4b 355 Gene3D G3DSA:1.10.260.40 13 64 1.9E-21 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS06020 32113081cd44b7070a3709cddaedfc4b 355 SMART SM00354 12 82 3.0E-25 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 Gene3D G3DSA:3.40.50.720 6 231 8.3E-62 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 SUPERFAMILY SSF51735 3 230 1.26E-60 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PANTHER PTHR24319 1 233 3.7E-84 T 14-09-2016 ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 3.8E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 3.8E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 3.8E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.1E-23 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 2.1E-23 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 2.1E-23 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.1E-23 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 2.1E-23 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 Pfam PF00106 short chain dehydrogenase 8 184 4.7E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09845 b6744b9873e7e0aa7077a81b1e717de9 238 PANTHER PTHR24319:SF32 1 233 3.7E-84 T 14-09-2016 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 17 36 1.5E-9 T 14-09-2016 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 112 130 1.5E-9 T 14-09-2016 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 280 1.5E-9 T 14-09-2016 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 16 290 1.4E-20 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 Gene3D G3DSA:3.50.50.60 117 140 1.3E-5 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 Gene3D G3DSA:3.50.50.60 258 299 1.3E-5 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 PANTHER PTHR22912 1 309 3.2E-68 T 14-09-2016 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 Gene3D G3DSA:3.50.50.60 141 234 2.4E-24 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 Gene3D G3DSA:3.50.50.60 14 116 8.7E-21 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 PANTHER PTHR22912:SF159 1 309 3.2E-68 T 14-09-2016 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 113 121 1.4E-10 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 16 38 1.4E-10 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 150 174 1.4E-10 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 135 147 1.4E-10 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS03430 9f1d44b746da7b966aca2aa6ac658edf 315 SUPERFAMILY SSF51905 6 300 6.22E-34 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10675 a734e5fe6294d30319a6f101344c0aef 204 Pfam PF00775 Dioxygenase 63 130 9.5E-8 T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 ccrud_RS10675 a734e5fe6294d30319a6f101344c0aef 204 Gene3D G3DSA:2.60.130.10 18 202 2.3E-43 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS10675 a734e5fe6294d30319a6f101344c0aef 204 SUPERFAMILY SSF49482 18 197 1.19E-35 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS10675 a734e5fe6294d30319a6f101344c0aef 204 PANTHER PTHR33711 28 202 3.4E-35 T 14-09-2016 ccrud_RS10675 a734e5fe6294d30319a6f101344c0aef 204 PANTHER PTHR33711:SF2 28 202 3.4E-35 T 14-09-2016 ccrud_RS10675 a734e5fe6294d30319a6f101344c0aef 204 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 28 203 4.1E-60 T 14-09-2016 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 ccrud_RS11060 df5c1e98ba8458db30d8ad5cde014761 481 Pfam PF00171 Aldehyde dehydrogenase family 14 479 1.1E-152 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS11060 df5c1e98ba8458db30d8ad5cde014761 481 PANTHER PTHR11699:SF212 5 481 2.5E-186 T 14-09-2016 ccrud_RS11060 df5c1e98ba8458db30d8ad5cde014761 481 PANTHER PTHR11699 5 481 2.5E-186 T 14-09-2016 ccrud_RS11060 df5c1e98ba8458db30d8ad5cde014761 481 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 252 259 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS11060 df5c1e98ba8458db30d8ad5cde014761 481 SUPERFAMILY SSF53720 4 480 1.3E-148 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS11060 df5c1e98ba8458db30d8ad5cde014761 481 Gene3D G3DSA:3.40.605.10 7 262 5.1E-83 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS11060 df5c1e98ba8458db30d8ad5cde014761 481 Gene3D G3DSA:3.40.309.10 263 454 1.3E-59 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 SUPERFAMILY SSF52317 1 189 3.9E-47 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 Pfam PF12833 Helix-turn-helix domain 230 308 9.2E-21 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 Gene3D G3DSA:1.10.10.60 206 261 4.4E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 Gene3D G3DSA:1.10.10.60 262 309 1.4E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 Pfam PF01965 DJ-1/PfpI family 2 169 9.7E-23 T 14-09-2016 IPR002818 DJ-1/PfpI ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 SUPERFAMILY SSF46689 260 309 3.49E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 PANTHER PTHR11019 65 314 8.8E-68 T 14-09-2016 ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 SUPERFAMILY SSF46689 208 257 2.42E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 Gene3D G3DSA:3.40.50.880 3 201 1.1E-50 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 PANTHER PTHR11019:SF58 65 314 8.8E-68 T 14-09-2016 ccrud_RS02680 710ffb7c47e6032d7841a9135dd7a96f 316 SMART SM00342 224 306 3.9E-23 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 Gene3D G3DSA:3.10.20.30 265 361 1.0E-44 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 PANTHER PTHR23305:SF12 3 361 1.0E-163 T 14-09-2016 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.9E-33 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.9E-33 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 1.9E-33 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.9E-33 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 3 361 1.5E-125 T 14-09-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 Gene3D G3DSA:1.10.150.300 131 200 7.5E-17 T 14-09-2016 IPR023192 TGS-like domain ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 Pfam PF01926 50S ribosome-binding GTPase 5 119 9.5E-23 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 SUPERFAMILY SSF52540 3 299 5.6E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 PANTHER PTHR23305 3 361 1.0E-163 T 14-09-2016 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 SUPERFAMILY SSF81271 277 361 5.01E-33 T 14-09-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 PIRSF PIRSF006641 1 361 7.7E-136 T 14-09-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 Pfam PF06071 Protein of unknown function (DUF933) 277 360 6.3E-38 T 14-09-2016 IPR013029 Domain of unknown function DUF933 ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 Gene3D G3DSA:3.40.50.300 201 264 1.1E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 Gene3D G3DSA:3.40.50.300 4 130 1.1E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05040 67917b90a1a4d5f56eb4a2acca69a63e 361 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 361 41.498 T 14-09-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 94 105 - T 14-09-2016 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 TIGRFAM TIGR00191 thrB: homoserine kinase 11 281 2.2E-64 T 14-09-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 PIRSF PIRSF000676 7 304 7.7E-87 T 14-09-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 Hamap MF_00384 Homoserine kinase [thrB]. 11 305 29.209 T 14-09-2016 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 Pfam PF08544 GHMP kinases C terminal 233 291 4.5E-5 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 Gene3D G3DSA:3.30.70.890 173 290 1.9E-35 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 SUPERFAMILY SSF54211 10 152 6.45E-34 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 PANTHER PTHR20861 7 289 5.5E-75 T 14-09-2016 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 PANTHER PTHR20861:SF1 7 289 5.5E-75 T 14-09-2016 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 SUPERFAMILY SSF55060 177 303 3.17E-29 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 Pfam PF00288 GHMP kinases N terminal domain 87 148 2.1E-13 T 14-09-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 PRINTS PR00958 Homoserine kinase signature 135 148 4.4E-39 T 14-09-2016 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 PRINTS PR00958 Homoserine kinase signature 258 273 4.4E-39 T 14-09-2016 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 PRINTS PR00958 Homoserine kinase signature 101 116 4.4E-39 T 14-09-2016 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 PRINTS PR00958 Homoserine kinase signature 181 198 4.4E-39 T 14-09-2016 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 PRINTS PR00958 Homoserine kinase signature 18 33 4.4E-39 T 14-09-2016 ccrud_RS05715 ada4680027be7a70856634edf6b64e9b 309 Gene3D G3DSA:3.30.230.10 10 155 1.1E-54 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 SUPERFAMILY SSF54991 740 834 1.09E-27 T 14-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Gene3D G3DSA:3.30.56.20 423 493 3.7E-21 T 14-09-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 SUPERFAMILY SSF50249 49 200 4.65E-25 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 SUPERFAMILY SSF56037 217 416 3.66E-68 T 14-09-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Pfam PF01588 Putative tRNA binding domain 50 151 2.2E-15 T 14-09-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 SMART SM00874 421 489 1.6E-21 T 14-09-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Pfam PF03147 Ferredoxin-fold anticodon binding domain 741 834 6.6E-27 T 14-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Pfam PF03483 B3/4 domain 235 405 1.4E-64 T 14-09-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Gene3D G3DSA:3.30.930.10 505 730 2.2E-60 T 14-09-2016 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 SUPERFAMILY SSF55681 485 601 9.44E-38 T 14-09-2016 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 SUPERFAMILY SSF55681 630 730 9.44E-38 T 14-09-2016 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Gene3D G3DSA:3.30.56.10 31 43 4.0E-5 T 14-09-2016 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Gene3D G3DSA:3.30.56.10 167 195 4.0E-5 T 14-09-2016 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 PANTHER PTHR10947:SF0 2 603 2.1E-219 T 14-09-2016 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 PANTHER PTHR10947:SF0 624 834 2.1E-219 T 14-09-2016 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 SUPERFAMILY SSF46955 422 493 2.11E-15 T 14-09-2016 IPR009061 Putative DNA-binding domain ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Gene3D G3DSA:2.40.50.140 45 165 1.1E-36 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 828 41.328 T 14-09-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 SMART SM00873 232 405 8.2E-85 T 14-09-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Gene3D G3DSA:3.30.70.380 743 834 6.5E-30 T 14-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 SMART SM00896 741 834 7.8E-41 T 14-09-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 33 834 3.5E-172 T 14-09-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 PANTHER PTHR10947 2 603 2.1E-219 T 14-09-2016 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 PANTHER PTHR10947 624 834 2.1E-219 T 14-09-2016 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Pfam PF03484 tRNA synthetase B5 domain 424 488 4.1E-15 T 14-09-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 ccrud_RS06665 bb890ab18971cd25025f251ab08ae4fa 835 Gene3D G3DSA:3.50.40.10 222 413 4.5E-77 T 14-09-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 ccrud_RS03370 4b16f58e0c25ecfe3c298264399cdfed 361 PANTHER PTHR30213 13 307 2.7E-47 T 14-09-2016 ccrud_RS03370 4b16f58e0c25ecfe3c298264399cdfed 361 PANTHER PTHR30213:SF1 13 307 2.7E-47 T 14-09-2016 ccrud_RS03370 4b16f58e0c25ecfe3c298264399cdfed 361 Pfam PF03631 Virulence factor BrkB 52 307 3.4E-44 T 14-09-2016 IPR017039 Virulence factor BrkB ccrud_RS09850 c700c0cae43678748442d1e4e1ac5d24 410 PANTHER PTHR30199 20 404 3.1E-53 T 14-09-2016 ccrud_RS09850 c700c0cae43678748442d1e4e1ac5d24 410 Pfam PF03594 Benzoate membrane transport protein 27 400 1.4E-68 T 14-09-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ccrud_RS09850 c700c0cae43678748442d1e4e1ac5d24 410 PANTHER PTHR30199:SF0 20 404 3.1E-53 T 14-09-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ccrud_RS12800 4a9a68230414cd34fc3cfd03328f75fe 196 PANTHER PTHR30037 1 183 3.6E-86 T 14-09-2016 ccrud_RS12800 4a9a68230414cd34fc3cfd03328f75fe 196 Gene3D G3DSA:1.10.340.30 12 189 3.5E-71 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 ccrud_RS12800 4a9a68230414cd34fc3cfd03328f75fe 196 Pfam PF03352 Methyladenine glycosylase 16 187 2.5E-65 T 14-09-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 ccrud_RS12800 4a9a68230414cd34fc3cfd03328f75fe 196 SUPERFAMILY SSF48150 12 189 6.98E-64 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 ccrud_RS12800 4a9a68230414cd34fc3cfd03328f75fe 196 PANTHER PTHR30037:SF4 1 183 3.6E-86 T 14-09-2016 ccrud_RS11170 0607cd41ba5569864022e8a631eb9222 167 PRINTS PR01100 Shikimate kinase family signature 99 116 3.8E-5 T 14-09-2016 ccrud_RS11170 0607cd41ba5569864022e8a631eb9222 167 PRINTS PR01100 Shikimate kinase family signature 9 24 3.8E-5 T 14-09-2016 ccrud_RS11170 0607cd41ba5569864022e8a631eb9222 167 Gene3D G3DSA:3.40.50.300 5 165 1.1E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11170 0607cd41ba5569864022e8a631eb9222 167 PANTHER PTHR11603 5 165 5.4E-71 T 14-09-2016 ccrud_RS11170 0607cd41ba5569864022e8a631eb9222 167 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 9 164 1.1E-54 T 14-09-2016 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530|UniPathway: UPA00792 ccrud_RS11170 0607cd41ba5569864022e8a631eb9222 167 SUPERFAMILY SSF52540 1 159 1.07E-22 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11170 0607cd41ba5569864022e8a631eb9222 167 Pfam PF01202 Shikimate kinase 15 123 2.3E-13 T 14-09-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 PANTHER PTHR10099 17 749 6.2E-290 T 14-09-2016 ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 SUPERFAMILY SSF55326 412 582 4.45E-51 T 14-09-2016 ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 Pfam PF02769 AIR synthase related protein, C-terminal domain 622 723 3.8E-8 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 Pfam PF02769 AIR synthase related protein, C-terminal domain 216 371 4.7E-35 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 PIRSF PIRSF001587 12 754 5.4E-273 T 14-09-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 PANTHER PTHR10099:SF2 17 749 6.2E-290 T 14-09-2016 ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 SUPERFAMILY SSF56042 215 442 7.33E-50 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 SUPERFAMILY SSF56042 587 751 2.09E-29 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 761 281.238 T 14-09-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 27 749 9.9E-251 T 14-09-2016 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 Gene3D G3DSA:3.90.650.10 264 371 2.1E-6 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 Pfam PF00586 AIR synthase related protein, N-terminal domain 101 202 1.2E-22 T 14-09-2016 IPR016188 PurM-like, N-terminal domain ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 Pfam PF00586 AIR synthase related protein, N-terminal domain 470 574 2.0E-20 T 14-09-2016 IPR016188 PurM-like, N-terminal domain ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 Gene3D G3DSA:3.30.1330.10 59 207 3.2E-48 T 14-09-2016 IPR016188 PurM-like, N-terminal domain ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 Gene3D G3DSA:3.30.1330.10 431 578 1.4E-51 T 14-09-2016 IPR016188 PurM-like, N-terminal domain ccrud_RS11675 f07d41ee797b9f0e2959f2ee19fa266b 762 SUPERFAMILY SSF55326 44 207 1.5E-46 T 14-09-2016 ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 PANTHER PTHR11751:SF10 121 455 4.3E-75 T 14-09-2016 ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 Gene3D G3DSA:3.40.640.10 139 352 1.4E-42 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 SUPERFAMILY SSF53383 75 455 1.29E-67 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 80 3.0E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 PANTHER PTHR11751 121 455 4.3E-75 T 14-09-2016 ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 8.2E-6 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 8.2E-6 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 SUPERFAMILY SSF46785 12 82 1.42E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 Gene3D G3DSA:1.10.10.10 8 81 2.3E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03840 0fa8cf9d0d69320fdacc3102487425eb 457 SMART SM00345 21 80 2.2E-17 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 SUPERFAMILY SSF47807 168 280 2.39E-28 T 14-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 681 694 1.9E-75 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 705 730 1.9E-75 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 742 753 1.9E-75 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 605 627 1.9E-75 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 651 674 1.9E-75 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 764 775 1.9E-75 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 628 643 1.9E-75 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 826 839 1.9E-75 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PRINTS PR00868 DNA-polymerase family A (pol I) signature 796 812 1.9E-75 T 14-09-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 SMART SM00475 1 258 2.9E-123 T 14-09-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 SMART SM00279 170 205 1.2E-9 T 14-09-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 SMART SM00482 636 843 2.4E-108 T 14-09-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 169 261 2.7E-26 T 14-09-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Gene3D G3DSA:3.30.70.370 770 878 1.5E-65 T 14-09-2016 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Gene3D G3DSA:3.30.70.370 614 662 1.5E-65 T 14-09-2016 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Pfam PF00476 DNA polymerase family A 500 876 4.1E-140 T 14-09-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Gene3D G3DSA:1.10.150.20 183 242 1.7E-23 T 14-09-2016 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Gene3D G3DSA:3.40.50.1010 1 182 4.8E-63 T 14-09-2016 IPR029060 PIN domain-like ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Gene3D G3DSA:1.20.1060.10 494 613 8.8E-30 T 14-09-2016 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 SMART SM00474 301 468 4.8E-12 T 14-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 SUPERFAMILY SSF88723 1 151 2.94E-49 T 14-09-2016 IPR029060 PIN domain-like ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PANTHER PTHR10133 1 878 0.0 T 14-09-2016 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 SUPERFAMILY SSF56672 475 877 1.45E-139 T 14-09-2016 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Gene3D G3DSA:1.10.150.20 663 769 8.1E-31 T 14-09-2016 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 TIGRFAM TIGR00593 pola: DNA polymerase I 1 878 8.1E-288 T 14-09-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 1 167 1.2E-50 T 14-09-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 Gene3D G3DSA:3.30.420.10 304 491 2.1E-44 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 ProSitePatterns PS00447 DNA polymerase family A signature. 705 724 - T 14-09-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 PANTHER PTHR10133:SF27 1 878 0.0 T 14-09-2016 ccrud_RS06535 5cc52dc7fcb4d2daa7403b97b8843344 880 SUPERFAMILY SSF53098 305 469 1.82E-26 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 SUPERFAMILY SSF52540 433 513 1.12E-22 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 Pfam PF00005 ABC transporter 392 480 5.9E-11 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 Gene3D G3DSA:3.40.50.300 373 516 5.6E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 ProSitePatterns PS00211 ABC transporters family signature. 453 467 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 PANTHER PTHR24221:SF138 32 508 1.7E-31 T 14-09-2016 ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 SUPERFAMILY SSF90123 457 465 3.27E-34 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 SUPERFAMILY SSF90123 29 319 3.27E-34 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 PANTHER PTHR24221 32 508 1.7E-31 T 14-09-2016 ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 Gene3D G3DSA:1.20.1560.10 31 335 8.9E-27 T 14-09-2016 ccrud_RS07415 472027b3a0aa9aa89ea48a2dab979a17 526 Pfam PF00664 ABC transporter transmembrane region 46 301 1.6E-14 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS05000 be9e68d03c2ed2a802022077cc86736e 144 PANTHER PTHR33164:SF15 8 132 1.5E-38 T 14-09-2016 ccrud_RS05000 be9e68d03c2ed2a802022077cc86736e 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 90 2.8E-6 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS05000 be9e68d03c2ed2a802022077cc86736e 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 58 74 2.8E-6 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS05000 be9e68d03c2ed2a802022077cc86736e 144 PRINTS PR00598 Bacterial regulatory protein MarR family signature 94 110 2.8E-6 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS05000 be9e68d03c2ed2a802022077cc86736e 144 PANTHER PTHR33164 8 132 1.5E-38 T 14-09-2016 ccrud_RS05000 be9e68d03c2ed2a802022077cc86736e 144 SUPERFAMILY SSF46785 10 132 8.41E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05000 be9e68d03c2ed2a802022077cc86736e 144 SMART SM00347 29 134 9.0E-10 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS05000 be9e68d03c2ed2a802022077cc86736e 144 Gene3D G3DSA:1.10.10.10 11 142 3.0E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05000 be9e68d03c2ed2a802022077cc86736e 144 Pfam PF01047 MarR family 37 98 1.8E-10 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS02890 ad6369231be1aebf2d4a5028f8b815b5 134 Gene3D G3DSA:3.30.420.80 14 134 6.0E-55 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02890 ad6369231be1aebf2d4a5028f8b815b5 134 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 17 131 3.4E-58 T 14-09-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02890 ad6369231be1aebf2d4a5028f8b815b5 134 Pfam PF00411 Ribosomal protein S11 24 133 6.4E-49 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02890 ad6369231be1aebf2d4a5028f8b815b5 134 ProSitePatterns PS00054 Ribosomal protein S11 signature. 102 124 - T 14-09-2016 IPR018102 Ribosomal S11, conserved site ccrud_RS02890 ad6369231be1aebf2d4a5028f8b815b5 134 PIRSF PIRSF002131 3 134 5.3E-53 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02890 ad6369231be1aebf2d4a5028f8b815b5 134 SUPERFAMILY SSF53137 19 134 1.4E-49 T 14-09-2016 ccrud_RS02890 ad6369231be1aebf2d4a5028f8b815b5 134 PANTHER PTHR11759 13 134 3.2E-68 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02890 ad6369231be1aebf2d4a5028f8b815b5 134 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 4 134 33.408 T 14-09-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 349 620 2.9E-101 T 14-09-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 SUPERFAMILY SSF47364 320 399 1.31E-16 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 Pfam PF02881 SRP54-type protein, helical bundle domain 340 401 1.2E-8 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 SUPERFAMILY SSF52540 417 620 7.68E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 SMART SM00382 421 572 3.8E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 Gene3D G3DSA:1.20.120.140 350 431 9.8E-25 T 14-09-2016 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 594 607 - T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 SMART SM00962 422 621 9.9E-101 T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 Gene3D G3DSA:3.40.50.300 432 621 8.0E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 PANTHER PTHR11564 313 620 1.9E-113 T 14-09-2016 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 PANTHER PTHR11564:SF16 313 620 1.9E-113 T 14-09-2016 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 Pfam PF00448 SRP54-type protein, GTPase domain 422 621 6.3E-71 T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 SMART SM00963 325 405 5.7E-14 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS09000 3e2439af40a46a479c44243da1f944f2 621 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 348 621 57.452 T 14-09-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 ccrud_RS08755 9adafa59a8779f6778b6402299adbb33 324 Pfam PF02687 FtsX-like permease family 206 315 1.1E-5 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS09645 d69e01d24599475e99ae09c293ce205b 114 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 10 114 4.8E-34 T 14-09-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 ccrud_RS09645 d69e01d24599475e99ae09c293ce205b 114 SUPERFAMILY SSF89360 6 101 5.49E-27 T 14-09-2016 IPR000361 FeS cluster biogenesis ccrud_RS09645 d69e01d24599475e99ae09c293ce205b 114 Gene3D G3DSA:2.60.300.12 10 103 5.1E-27 T 14-09-2016 IPR000361 FeS cluster biogenesis ccrud_RS09645 d69e01d24599475e99ae09c293ce205b 114 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 96 113 - T 14-09-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site ccrud_RS09645 d69e01d24599475e99ae09c293ce205b 114 Pfam PF01521 Iron-sulphur cluster biosynthesis 12 111 7.1E-16 T 14-09-2016 IPR000361 FeS cluster biogenesis ccrud_RS09645 d69e01d24599475e99ae09c293ce205b 114 PANTHER PTHR10072 10 114 8.3E-34 T 14-09-2016 ccrud_RS13740 f6a37227298b00772377a325766a8abd 115 Pfam PF00355 Rieske [2Fe-2S] domain 25 99 3.9E-10 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS13740 f6a37227298b00772377a325766a8abd 115 Gene3D G3DSA:2.102.10.10 12 110 2.8E-15 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS13740 f6a37227298b00772377a325766a8abd 115 SUPERFAMILY SSF50022 21 112 1.23E-17 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS03200 df0b47973959373758b6f5d6a0501a38 805 Pfam PF02687 FtsX-like permease family 689 798 1.7E-6 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS03200 df0b47973959373758b6f5d6a0501a38 805 Pfam PF02687 FtsX-like permease family 249 368 6.7E-13 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 Gene3D G3DSA:3.40.50.300 9 234 7.8E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 Pfam PF08494 DEAD/H associated 680 867 5.5E-73 T 14-09-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 PANTHER PTHR24031 301 328 1.7E-63 T 14-09-2016 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 Pfam PF00271 Helicase conserved C-terminal domain 303 428 1.6E-11 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 Pfam PF00270 DEAD/DEAH box helicase 25 217 1.6E-25 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 PANTHER PTHR24031:SF122 1318 1326 1.7E-63 T 14-09-2016 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 PANTHER PTHR24031:SF122 9 248 1.7E-63 T 14-09-2016 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 PANTHER PTHR24031:SF122 361 507 1.7E-63 T 14-09-2016 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 SMART SM00487 20 244 2.5E-34 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 SMART SM00490 335 428 7.7E-14 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 PANTHER PTHR24031:SF122 301 328 1.7E-63 T 14-09-2016 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 PANTHER PTHR24031 1318 1326 1.7E-63 T 14-09-2016 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 PANTHER PTHR24031 9 248 1.7E-63 T 14-09-2016 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 PANTHER PTHR24031 361 507 1.7E-63 T 14-09-2016 ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 SUPERFAMILY SSF52540 33 219 8.3E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 SUPERFAMILY SSF52540 272 326 8.3E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 SUPERFAMILY SSF52540 359 437 8.3E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 Gene3D G3DSA:3.40.50.300 359 450 2.8E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04170 66c1f89197a56f40ddf89457e5d292fe 1518 Gene3D G3DSA:3.40.50.300 300 326 2.8E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 PANTHER PTHR11624 240 628 1.5E-235 T 14-09-2016 IPR033247 Transketolase family ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 SUPERFAMILY SSF52922 507 627 1.13E-21 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 ProSitePatterns PS00802 Transketolase signature 2. 423 439 - T 14-09-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 SUPERFAMILY SSF52518 3 194 3.03E-64 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 SUPERFAMILY SSF52518 242 379 3.03E-64 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 Gene3D G3DSA:3.40.50.970 298 482 1.1E-56 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 ProSitePatterns PS00801 Transketolase signature 1. 29 48 - T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 PANTHER PTHR11624:SF20 17 213 1.5E-235 T 14-09-2016 ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 3 627 41.057 T 14-09-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 PANTHER PTHR11624:SF20 240 628 1.5E-235 T 14-09-2016 ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 SMART SM00861 317 481 7.7E-56 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 4 281 1.7E-104 T 14-09-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 PANTHER PTHR11624 17 213 1.5E-235 T 14-09-2016 IPR033247 Transketolase family ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 Gene3D G3DSA:3.40.50.920 508 626 9.7E-25 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 5 626 4.9E-185 T 14-09-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 Pfam PF02780 Transketolase, C-terminal domain 505 618 5.9E-21 T 14-09-2016 IPR033248 Transketolase, C-terminal domain ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 Gene3D G3DSA:3.40.50.970 238 297 5.1E-46 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 Gene3D G3DSA:3.40.50.970 5 190 5.1E-46 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS08195 44597c8c629e17586b2edcae90c3210b 633 Pfam PF02779 Transketolase, pyrimidine binding domain 317 480 7.4E-36 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain ccrud_RS04600 557c61387396cdeebac861ae9a1d3bbc 423 SUPERFAMILY SSF53822 52 417 1.32E-101 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS04600 557c61387396cdeebac861ae9a1d3bbc 423 Gene3D G3DSA:3.40.50.2300 169 351 1.0E-72 T 14-09-2016 ccrud_RS04600 557c61387396cdeebac861ae9a1d3bbc 423 PANTHER PTHR30483:SF8 51 423 3.8E-162 T 14-09-2016 ccrud_RS04600 557c61387396cdeebac861ae9a1d3bbc 423 Pfam PF13433 Periplasmic binding protein domain 53 411 1.4E-146 T 14-09-2016 ccrud_RS04600 557c61387396cdeebac861ae9a1d3bbc 423 PANTHER PTHR30483 51 423 3.8E-162 T 14-09-2016 ccrud_RS04600 557c61387396cdeebac861ae9a1d3bbc 423 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 53 409 2.5E-174 T 14-09-2016 IPR017777 ABC transporter, urea, substrate-binding, UrtA ccrud_RS00125 75ec1ca0d955e452b0f3ac74c30a75e4 253 SMART SM00382 29 226 1.0E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS00125 75ec1ca0d955e452b0f3ac74c30a75e4 253 Pfam PF00005 ABC transporter 20 171 7.9E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS00125 75ec1ca0d955e452b0f3ac74c30a75e4 253 PANTHER PTHR24220:SF520 6 253 1.9E-129 T 14-09-2016 ccrud_RS00125 75ec1ca0d955e452b0f3ac74c30a75e4 253 Gene3D G3DSA:3.40.50.300 3 229 1.2E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00125 75ec1ca0d955e452b0f3ac74c30a75e4 253 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS00125 75ec1ca0d955e452b0f3ac74c30a75e4 253 PANTHER PTHR24220 6 253 1.9E-129 T 14-09-2016 ccrud_RS00125 75ec1ca0d955e452b0f3ac74c30a75e4 253 SUPERFAMILY SSF52540 4 229 6.03E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06985 e9db31ea9e2681dafe9ef84e614c55fe 191 SUPERFAMILY SSF46955 32 117 6.96E-14 T 14-09-2016 IPR009061 Putative DNA-binding domain ccrud_RS06985 e9db31ea9e2681dafe9ef84e614c55fe 191 SMART SM00422 32 104 3.4E-17 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS06985 e9db31ea9e2681dafe9ef84e614c55fe 191 Pfam PF13411 MerR HTH family regulatory protein 32 101 9.9E-14 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS06985 e9db31ea9e2681dafe9ef84e614c55fe 191 PANTHER PTHR30204 24 189 3.8E-51 T 14-09-2016 ccrud_RS06985 e9db31ea9e2681dafe9ef84e614c55fe 191 PANTHER PTHR30204:SF3 24 189 3.8E-51 T 14-09-2016 ccrud_RS06985 e9db31ea9e2681dafe9ef84e614c55fe 191 Gene3D G3DSA:1.10.1660.10 34 114 2.8E-12 T 14-09-2016 ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 Gene3D G3DSA:3.40.50.980 100 290 4.4E-27 T 14-09-2016 ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 ProSitePatterns PS00455 Putative AMP-binding domain signature. 285 296 - T 14-09-2016 IPR020845 AMP-binding, conserved site ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 TIGRFAM TIGR01217 ac_ac_CoA_syn: acetoacetate-CoA ligase 14 670 1.2E-206 T 14-09-2016 IPR005914 Acetoacetyl-CoA synthase GO:0006629|GO:0030729 KEGG: 00280+6.2.1.16|KEGG: 00650+6.2.1.16 ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 47 103 5.6E-8 T 14-09-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 Gene3D G3DSA:3.40.50.980 291 440 6.5E-17 T 14-09-2016 ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 PANTHER PTHR24095 18 673 7.7E-219 T 14-09-2016 ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 Gene3D G3DSA:3.30.300.30 541 646 1.1E-13 T 14-09-2016 ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 PANTHER PTHR24095:SF46 18 673 7.7E-219 T 14-09-2016 ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 SUPERFAMILY SSF56801 41 642 2.62E-110 T 14-09-2016 ccrud_RS13800 e1140e99c0ccb14de291e62e4b267bd8 673 Pfam PF00501 AMP-binding enzyme 120 542 1.6E-48 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 ccrud_RS12935 acd4bec100e72315ee3997fe7921c40b 321 PANTHER PTHR30468 1 289 1.8E-102 T 14-09-2016 ccrud_RS12935 acd4bec100e72315ee3997fe7921c40b 321 Gene3D G3DSA:3.60.130.10 13 289 1.1E-76 T 14-09-2016 ccrud_RS12935 acd4bec100e72315ee3997fe7921c40b 321 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 17 274 4.5E-45 T 14-09-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 ccrud_RS12935 acd4bec100e72315ee3997fe7921c40b 321 PANTHER PTHR30468:SF5 1 289 1.8E-102 T 14-09-2016 ccrud_RS12935 acd4bec100e72315ee3997fe7921c40b 321 SUPERFAMILY SSF51197 14 281 1.14E-73 T 14-09-2016 ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 Gene3D G3DSA:3.40.50.800 333 425 9.2E-27 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 PANTHER PTHR11476 16 429 1.3E-187 T 14-09-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 12 426 31.463 T 14-09-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 Pfam PF03129 Anticodon binding domain 337 425 2.7E-12 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 16 416 4.6E-137 T 14-09-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 Pfam PF13393 Histidyl-tRNA synthetase 19 318 8.8E-41 T 14-09-2016 ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 SUPERFAMILY SSF55681 16 324 8.81E-88 T 14-09-2016 ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 SUPERFAMILY SSF52954 335 428 2.87E-22 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 PANTHER PTHR11476:SF9 16 429 1.3E-187 T 14-09-2016 ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 Gene3D G3DSA:3.30.930.10 15 194 2.3E-85 T 14-09-2016 ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 Gene3D G3DSA:3.30.930.10 228 328 2.3E-85 T 14-09-2016 ccrud_RS07970 fbe2f99ab27e04103b801a1868382204 429 PIRSF PIRSF001549 10 428 2.5E-108 T 14-09-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 Pfam PF01568 Molydopterin dinucleotide binding domain 1107 1221 6.4E-25 T 14-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 PANTHER PTHR11615:SF35 1009 1248 0.0 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 64 82 - T 14-09-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 PANTHER PTHR11615:SF35 867 893 0.0 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 SMART SM00926 59 121 4.3E-9 T 14-09-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 TIGRFAM TIGR01580 narG: nitrate reductase, alpha subunit 24 1246 0.0 T 14-09-2016 IPR006468 Nitrate reductase, alpha subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 Gene3D G3DSA:3.40.228.10 489 609 1.8E-80 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 Gene3D G3DSA:3.40.228.10 237 370 1.8E-80 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 Gene3D G3DSA:2.20.25.90 68 114 3.7E-30 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 ProSitePatterns PS00490 Prokaryotic molybdopterin oxidoreductases signature 2. 792 809 - T 14-09-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 PANTHER PTHR11615 50 391 0.0 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 Gene3D G3DSA:2.40.40.20 1070 1247 3.2E-39 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 Gene3D G3DSA:3.40.50.740 157 216 3.5E-4 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 SUPERFAMILY SSF53706 20 1081 0.0 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 SUPERFAMILY SSF50692 1102 1247 5.65E-41 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 Gene3D G3DSA:3.90.55.10 795 850 2.5E-5 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 Gene3D G3DSA:3.40.50.740 610 794 2.9E-50 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 PANTHER PTHR11615:SF35 676 851 0.0 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 PANTHER PTHR11615:SF35 50 391 0.0 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 PANTHER PTHR11615 867 893 0.0 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 PANTHER PTHR11615 1009 1248 0.0 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 PANTHER PTHR11615 676 851 0.0 T 14-09-2016 ccrud_RS05740 f9f9ffdeb2392fa0ee922c25116fd9ff 1253 Pfam PF00384 Molybdopterin oxidoreductase 124 847 3.7E-131 T 14-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 125 458 3.7E-111 T 14-09-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 PANTHER PTHR10836 111 471 1.7E-210 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 SUPERFAMILY SSF51735 124 300 2.55E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 Gene3D G3DSA:3.30.360.10 293 448 3.8E-56 T 14-09-2016 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 SUPERFAMILY SSF55347 284 447 8.93E-55 T 14-09-2016 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 SMART SM00846 123 284 7.9E-57 T 14-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 PANTHER PTHR10836:SF35 111 471 1.7E-210 T 14-09-2016 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 Gene3D G3DSA:3.40.50.720 124 292 2.4E-51 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 124 284 3.6E-39 T 14-09-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 289 446 7.2E-47 T 14-09-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 242 255 4.0E-18 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 305 321 4.0E-18 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 361 378 4.0E-18 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 278 296 4.0E-18 T 14-09-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS04635 6a6e3dffbf1790fade9ed8e9a13039fb 480 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 282 289 - T 14-09-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 ccrud_RS11925 9d711b1b5dc7e2e95e9c0a05eac0938c 430 SUPERFAMILY SSF75005 7 342 5.5E-76 T 14-09-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain ccrud_RS11925 9d711b1b5dc7e2e95e9c0a05eac0938c 430 PANTHER PTHR30175:SF8 6 344 4.9E-51 T 14-09-2016 ccrud_RS11925 9d711b1b5dc7e2e95e9c0a05eac0938c 430 PANTHER PTHR30175 6 344 4.9E-51 T 14-09-2016 ccrud_RS11925 9d711b1b5dc7e2e95e9c0a05eac0938c 430 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 13 343 8.2E-68 T 14-09-2016 IPR013148 Glycosyl hydrolase family 32, N-terminal ccrud_RS11925 9d711b1b5dc7e2e95e9c0a05eac0938c 430 Gene3D G3DSA:2.115.10.20 21 127 2.2E-7 T 14-09-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain ccrud_RS11925 9d711b1b5dc7e2e95e9c0a05eac0938c 430 SMART SM00640 13 414 4.5E-81 T 14-09-2016 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 ccrud_RS11925 9d711b1b5dc7e2e95e9c0a05eac0938c 430 ProSitePatterns PS00609 Glycosyl hydrolases family 32 active site. 13 26 - T 14-09-2016 IPR018053 Glycoside hydrolase, family 32, active site GO:0004553|GO:0005975 KEGG: 00052+3.2.1.26|KEGG: 00500+3.2.1.26 ccrud_RS10815 2d9a544af741649452bf6c043909901b 273 PANTHER PTHR31480 5 269 3.7E-33 T 14-09-2016 ccrud_RS10815 2d9a544af741649452bf6c043909901b 273 SUPERFAMILY SSF48576 7 271 3.02E-51 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS10815 2d9a544af741649452bf6c043909901b 273 Gene3D G3DSA:1.10.600.10 6 270 1.6E-43 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS10815 2d9a544af741649452bf6c043909901b 273 PANTHER PTHR31480:SF0 5 269 3.7E-33 T 14-09-2016 ccrud_RS10815 2d9a544af741649452bf6c043909901b 273 Pfam PF00494 Squalene/phytoene synthase 12 190 1.2E-31 T 14-09-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 ccrud_RS10815 2d9a544af741649452bf6c043909901b 273 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 163 189 - T 14-09-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 Pfam PF01808 AICARFT/IMPCHase bienzyme 139 453 2.1E-112 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 8 520 41.419 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 SUPERFAMILY SSF52335 8 197 1.12E-62 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 Gene3D G3DSA:3.40.50.1380 6 189 4.3E-75 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 PIRSF PIRSF000414 2 520 3.2E-197 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 PANTHER PTHR11692:SF2 6 520 6.4E-265 T 14-09-2016 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 Pfam PF02142 MGS-like domain 21 133 2.3E-22 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 SMART SM00798 139 454 3.4E-180 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 PANTHER PTHR11692 6 520 6.4E-265 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 Gene3D G3DSA:3.40.140.20 367 510 7.7E-55 T 14-09-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 SUPERFAMILY SSF53927 219 520 4.81E-118 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 Gene3D G3DSA:3.40.140.20 245 360 1.8E-44 T 14-09-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 9 520 4.2E-167 T 14-09-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 ccrud_RS04255 c93ed409515fb3cd88882f08ade055ea 520 SMART SM00851 20 134 2.0E-47 T 14-09-2016 IPR011607 Methylglyoxal synthase-like domain ccrud_RS01495 f45d870dd45153aa1587b65a0f500f78 275 PANTHER PTHR23131 19 269 1.6E-39 T 14-09-2016 ccrud_RS01495 f45d870dd45153aa1587b65a0f500f78 275 SMART SM00849 31 198 2.1E-17 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01495 f45d870dd45153aa1587b65a0f500f78 275 Pfam PF00753 Metallo-beta-lactamase superfamily 31 198 9.0E-13 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01495 f45d870dd45153aa1587b65a0f500f78 275 SUPERFAMILY SSF56281 9 268 2.3E-41 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01495 f45d870dd45153aa1587b65a0f500f78 275 Gene3D G3DSA:3.60.15.10 24 227 5.3E-35 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01495 f45d870dd45153aa1587b65a0f500f78 275 PANTHER PTHR23131:SF4 19 269 1.6E-39 T 14-09-2016 ccrud_RS11375 916441f46694c64bb983873237ec938a 40 Pfam PF00444 Ribosomal protein L36 1 40 4.1E-17 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS11375 916441f46694c64bb983873237ec938a 40 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 40 8.9E-6 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS11375 916441f46694c64bb983873237ec938a 40 SUPERFAMILY SSF57840 1 40 7.06E-12 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS11375 916441f46694c64bb983873237ec938a 40 PANTHER PTHR18804:SF11 1 40 3.2E-14 T 14-09-2016 ccrud_RS11375 916441f46694c64bb983873237ec938a 40 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 40 15.033 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS11375 916441f46694c64bb983873237ec938a 40 PANTHER PTHR18804 1 40 3.2E-14 T 14-09-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS03305 5152209b921bcfe7d434739097d80a4e 295 PANTHER PTHR30157:SF0 244 290 1.1E-54 T 14-09-2016 ccrud_RS03305 5152209b921bcfe7d434739097d80a4e 295 Gene3D G3DSA:2.40.30.10 3 130 5.2E-26 T 14-09-2016 ccrud_RS03305 5152209b921bcfe7d434739097d80a4e 295 PANTHER PTHR30157:SF0 9 217 1.1E-54 T 14-09-2016 ccrud_RS03305 5152209b921bcfe7d434739097d80a4e 295 Gene3D G3DSA:3.40.50.80 143 293 5.8E-41 T 14-09-2016 ccrud_RS03305 5152209b921bcfe7d434739097d80a4e 295 Pfam PF04954 Siderophore-interacting protein 147 290 1.3E-37 T 14-09-2016 IPR007037 Siderophore-interacting protein ccrud_RS03305 5152209b921bcfe7d434739097d80a4e 295 Pfam PF08021 Siderophore-interacting FAD-binding domain 9 131 4.3E-33 T 14-09-2016 IPR013113 FAD-binding 9, siderophore-interacting ccrud_RS03305 5152209b921bcfe7d434739097d80a4e 295 SUPERFAMILY SSF63380 4 130 3.78E-11 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS03305 5152209b921bcfe7d434739097d80a4e 295 PANTHER PTHR30157 9 217 1.1E-54 T 14-09-2016 ccrud_RS03305 5152209b921bcfe7d434739097d80a4e 295 PANTHER PTHR30157 244 290 1.1E-54 T 14-09-2016 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 SUPERFAMILY SSF48179 199 376 1.19E-41 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 Hamap MF_00196 Mannitol-1-phosphate 5-dehydrogenase [mtlD]. 1 378 34.686 T 14-09-2016 IPR023028 Mannitol-1-phosphate 5-dehydrogenase GO:0008926|GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 Gene3D G3DSA:3.40.50.720 2 187 4.9E-18 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 PANTHER PTHR30524:SF0 1 377 1.2E-157 T 14-09-2016 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 SUPERFAMILY SSF51735 1 197 1.08E-38 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 1 124 1.2E-18 T 14-09-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 149 353 4.5E-42 T 14-09-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 PANTHER PTHR30524 1 377 1.2E-157 T 14-09-2016 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 Gene3D G3DSA:1.10.1040.10 198 355 2.4E-41 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 PRINTS PR00084 Mannitol dehydrogenase signature 147 160 4.5E-9 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 PRINTS PR00084 Mannitol dehydrogenase signature 3 13 4.5E-9 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS10015 84b10cde119fd4bf30e8d01f62e2e1bc 381 PRINTS PR00084 Mannitol dehydrogenase signature 165 180 4.5E-9 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 PIRSF PIRSF004491 1 333 6.3E-98 T 14-09-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 Pfam PF01687 Riboflavin kinase 184 325 1.6E-32 T 14-09-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 19 326 1.8E-66 T 14-09-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 Gene3D G3DSA:2.40.30.30 180 330 9.7E-45 T 14-09-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 PANTHER PTHR22749:SF0 254 326 1.9E-105 T 14-09-2016 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 PANTHER PTHR22749:SF0 1 235 1.9E-105 T 14-09-2016 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 18 47 4.2E-7 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 PANTHER PTHR22749 254 326 1.9E-105 T 14-09-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 PANTHER PTHR22749 1 235 1.9E-105 T 14-09-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 SMART SM00904 183 327 8.1E-49 T 14-09-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 Pfam PF06574 FAD synthetase 12 166 4.3E-51 T 14-09-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 SUPERFAMILY SSF52374 17 178 1.39E-31 T 14-09-2016 ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 Gene3D G3DSA:3.40.50.620 3 179 4.2E-60 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS08590 0c21b6b030b06407404e3101e1296cb1 341 SUPERFAMILY SSF82114 174 328 4.36E-41 T 14-09-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 ccrud_RS13170 9b6776a660995536362c460b8f8ee634 296 PANTHER PTHR10434 25 290 1.9E-75 T 14-09-2016 ccrud_RS13170 9b6776a660995536362c460b8f8ee634 296 PANTHER PTHR10434:SF4 25 290 1.9E-75 T 14-09-2016 ccrud_RS13170 9b6776a660995536362c460b8f8ee634 296 Pfam PF01553 Acyltransferase 50 176 1.4E-29 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 ccrud_RS13170 9b6776a660995536362c460b8f8ee634 296 SUPERFAMILY SSF69593 45 237 7.32E-32 T 14-09-2016 ccrud_RS13170 9b6776a660995536362c460b8f8ee634 296 Gene3D G3DSA:3.40.1130.10 54 222 1.3E-18 T 14-09-2016 ccrud_RS13170 9b6776a660995536362c460b8f8ee634 296 SMART SM00563 64 179 2.2E-33 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 419 429 3.1E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 460 473 3.1E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 401 415 3.1E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 454 3.1E-13 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 Gene3D G3DSA:3.30.565.10 322 476 2.5E-36 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 SMART SM00304 192 244 1.4E-11 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 365 474 1.1E-16 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 SMART SM00388 252 319 2.7E-18 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 PANTHER PTHR24423:SF500 186 473 3.4E-130 T 14-09-2016 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 Pfam PF00512 His Kinase A (phospho-acceptor) domain 253 319 9.4E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 SUPERFAMILY SSF55874 308 481 9.95E-40 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 SUPERFAMILY SSF158472 194 241 5.23E-8 T 14-09-2016 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 Pfam PF00672 HAMP domain 173 240 1.4E-13 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 SUPERFAMILY SSF47384 235 319 1.2E-16 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 Gene3D G3DSA:1.10.287.130 244 315 4.6E-17 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 SMART SM00387 365 476 1.5E-28 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS03675 2b392bc8b7248cdf92d09519203024bc 499 PANTHER PTHR24423 186 473 3.4E-130 T 14-09-2016 ccrud_RS01685 e71e94efbb369617a72fd23cfebd4941 236 SUPERFAMILY SSF53448 13 218 5.96E-29 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01685 e71e94efbb369617a72fd23cfebd4941 236 Gene3D G3DSA:3.90.550.10 15 127 2.2E-16 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01685 e71e94efbb369617a72fd23cfebd4941 236 Pfam PF00535 Glycosyl transferase family 2 14 172 4.7E-24 T 14-09-2016 IPR001173 Glycosyltransferase 2-like ccrud_RS01685 e71e94efbb369617a72fd23cfebd4941 236 PANTHER PTHR10859:SF84 10 231 2.2E-60 T 14-09-2016 ccrud_RS01685 e71e94efbb369617a72fd23cfebd4941 236 PANTHER PTHR10859 10 231 2.2E-60 T 14-09-2016 ccrud_RS12390 9ea03ee571a6503bc9e7789c18434ea0 398 PANTHER PTHR23502 3 381 1.3E-101 T 14-09-2016 ccrud_RS12390 9ea03ee571a6503bc9e7789c18434ea0 398 Gene3D G3DSA:1.20.1250.20 14 194 2.5E-33 T 14-09-2016 ccrud_RS12390 9ea03ee571a6503bc9e7789c18434ea0 398 Gene3D G3DSA:1.20.1250.20 212 388 2.0E-5 T 14-09-2016 ccrud_RS12390 9ea03ee571a6503bc9e7789c18434ea0 398 PANTHER PTHR23502:SF19 3 381 1.3E-101 T 14-09-2016 ccrud_RS12390 9ea03ee571a6503bc9e7789c18434ea0 398 ProSitePatterns PS00216 Sugar transport proteins signature 1. 65 82 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS12390 9ea03ee571a6503bc9e7789c18434ea0 398 SUPERFAMILY SSF103473 9 389 1.2E-58 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS12390 9ea03ee571a6503bc9e7789c18434ea0 398 Pfam PF07690 Major Facilitator Superfamily 16 356 2.3E-42 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS12390 9ea03ee571a6503bc9e7789c18434ea0 398 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 10 382 1.1E-79 T 14-09-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 ccrud_RS10345 11d5a17db408868ee0a831933729ed72 432 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 254 430 1.8E-89 T 14-09-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 ccrud_RS10345 11d5a17db408868ee0a831933729ed72 432 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 10 253 4.1E-117 T 14-09-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 ccrud_RS10345 11d5a17db408868ee0a831933729ed72 432 SUPERFAMILY SSF51621 10 430 6.73E-148 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS10345 11d5a17db408868ee0a831933729ed72 432 PANTHER PTHR21631 11 431 8.6E-155 T 14-09-2016 ccrud_RS10345 11d5a17db408868ee0a831933729ed72 432 Gene3D G3DSA:3.20.20.60 11 412 2.5E-155 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS10345 11d5a17db408868ee0a831933729ed72 432 ProSitePatterns PS00161 Isocitrate lyase signature. 191 196 - T 14-09-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 ccrud_RS10345 11d5a17db408868ee0a831933729ed72 432 Pfam PF00463 Isocitrate lyase family 11 253 7.6E-51 T 14-09-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 ccrud_RS10345 11d5a17db408868ee0a831933729ed72 432 Pfam PF00463 Isocitrate lyase family 255 427 4.4E-46 T 14-09-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 ccrud_RS10345 11d5a17db408868ee0a831933729ed72 432 PIRSF PIRSF001362 1 432 2.4E-230 T 14-09-2016 ccrud_RS05470 dd49012fe89c27f4ca3e996af1553181 268 SUPERFAMILY SSF51735 106 263 1.1E-28 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05470 dd49012fe89c27f4ca3e996af1553181 268 Gene3D G3DSA:3.40.50.720 111 263 3.8E-34 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05470 dd49012fe89c27f4ca3e996af1553181 268 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 26 93 7.8E-15 T 14-09-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS05470 dd49012fe89c27f4ca3e996af1553181 268 PANTHER PTHR21089 1 267 1.1E-114 T 14-09-2016 ccrud_RS05470 dd49012fe89c27f4ca3e996af1553181 268 PANTHER PTHR21089:SF9 1 267 1.1E-114 T 14-09-2016 ccrud_RS05470 dd49012fe89c27f4ca3e996af1553181 268 SUPERFAMILY SSF53223 9 105 5.41E-25 T 14-09-2016 ccrud_RS05470 dd49012fe89c27f4ca3e996af1553181 268 Gene3D G3DSA:3.40.192.10 25 110 5.2E-26 T 14-09-2016 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 Gene3D G3DSA:3.40.190.10 101 177 5.2E-16 T 14-09-2016 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 SUPERFAMILY SSF55021 192 282 2.06E-23 T 14-09-2016 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 230 237 - T 14-09-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 Pfam PF01842 ACT domain 203 267 4.4E-9 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 Gene3D G3DSA:3.40.190.10 6 100 5.5E-25 T 14-09-2016 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 PANTHER PTHR21022 1 302 2.6E-76 T 14-09-2016 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 SUPERFAMILY SSF53850 8 195 9.39E-44 T 14-09-2016 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 Pfam PF00800 Prephenate dehydratase 8 191 1.2E-41 T 14-09-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 166 188 - T 14-09-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 Gene3D G3DSA:3.30.70.260 197 283 3.3E-27 T 14-09-2016 ccrud_RS13200 5038b2c400ab0ce04580fde4f4e58fbd 315 PIRSF PIRSF001500 1 285 1.6E-57 T 14-09-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 ccrud_RS11945 81cd0d30d46b24aad0b051de31dd0a35 303 Gene3D G3DSA:3.30.420.40 146 276 4.6E-29 T 14-09-2016 ccrud_RS11945 81cd0d30d46b24aad0b051de31dd0a35 303 SUPERFAMILY SSF53067 7 301 3.49E-40 T 14-09-2016 ccrud_RS11945 81cd0d30d46b24aad0b051de31dd0a35 303 Pfam PF00480 ROK family 8 299 2.1E-36 T 14-09-2016 IPR000600 ROK family ccrud_RS11945 81cd0d30d46b24aad0b051de31dd0a35 303 PANTHER PTHR18964:SF123 8 302 1.2E-32 T 14-09-2016 ccrud_RS11945 81cd0d30d46b24aad0b051de31dd0a35 303 PANTHER PTHR18964 8 302 1.2E-32 T 14-09-2016 ccrud_RS11945 81cd0d30d46b24aad0b051de31dd0a35 303 Gene3D G3DSA:3.30.420.40 6 145 4.5E-27 T 14-09-2016 ccrud_RS13675 32f926c31a16a153eaa170db9833bda5 412 Gene3D G3DSA:1.10.3860.10 3 383 6.0E-65 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13675 32f926c31a16a153eaa170db9833bda5 412 PANTHER PTHR11958 119 384 4.1E-55 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13675 32f926c31a16a153eaa170db9833bda5 412 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 1.0E-7 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13675 32f926c31a16a153eaa170db9833bda5 412 PRINTS PR00173 Glutamate-aspartate symporter signature 334 354 1.0E-7 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13675 32f926c31a16a153eaa170db9833bda5 412 PRINTS PR00173 Glutamate-aspartate symporter signature 201 220 1.0E-7 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13675 32f926c31a16a153eaa170db9833bda5 412 PRINTS PR00173 Glutamate-aspartate symporter signature 271 297 1.0E-7 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13675 32f926c31a16a153eaa170db9833bda5 412 Pfam PF00375 Sodium:dicarboxylate symporter family 5 379 8.7E-78 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13675 32f926c31a16a153eaa170db9833bda5 412 PANTHER PTHR11958:SF53 119 384 4.1E-55 T 14-09-2016 ccrud_RS13675 32f926c31a16a153eaa170db9833bda5 412 SUPERFAMILY SSF118215 5 380 8.37E-82 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 TIGRFAM TIGR00830 PTBA: PTS system, glucose subfamily, IIA component 503 626 3.4E-37 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 PANTHER PTHR30175:SF7 1 601 2.9E-173 T 14-09-2016 ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 TIGRFAM TIGR01996 PTS-II-BC-sucr: PTS system, sucrose-specific IIBC component 2 461 3.7E-188 T 14-09-2016 IPR010973 Phosphotransferase system, sucrose-specific IIBC component GO:0008982|GO:0009401|GO:0016021 ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 SUPERFAMILY SSF55604 6 79 2.09E-16 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 PANTHER PTHR30175 1 601 2.9E-173 T 14-09-2016 ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 Pfam PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 502 629 1.2E-43 T 14-09-2016 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 Pfam PF00367 phosphotransferase system, EIIB 8 41 7.4E-13 T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 ProSitePatterns PS01035 PTS EIIB domains cysteine phosphorylation site signature. 19 36 - T 14-09-2016 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site GO:0008982 ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 SUPERFAMILY SSF51261 497 648 2.09E-44 T 14-09-2016 IPR011055 Duplicated hybrid motif ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 Gene3D G3DSA:3.30.1360.60 1 81 2.9E-22 T 14-09-2016 IPR001996 Phosphotransferase system, IIB component, type 1 GO:0008982|GO:0009401 ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 Pfam PF02378 Phosphotransferase system, EIIC 112 402 1.6E-51 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 ccrud_RS11920 f983d6918438ffa1a0810c1bb648fa10 660 Gene3D G3DSA:2.70.70.10 497 650 1.9E-51 T 14-09-2016 ccrud_RS11165 67c2f123a6c162efeb70a0324df2e42d 396 SUPERFAMILY SSF52540 187 377 6.33E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11165 67c2f123a6c162efeb70a0324df2e42d 396 PANTHER PTHR11328 1 176 5.2E-35 T 14-09-2016 ccrud_RS11165 67c2f123a6c162efeb70a0324df2e42d 396 SUPERFAMILY SSF103473 2 134 1.31E-7 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS11165 67c2f123a6c162efeb70a0324df2e42d 396 Pfam PF13189 Cytidylate kinase-like family 189 364 2.3E-25 T 14-09-2016 IPR026865 Cytidylate kinase-like family MetaCyc: PWY-7205 ccrud_RS11165 67c2f123a6c162efeb70a0324df2e42d 396 PANTHER PTHR11328:SF24 1 176 5.2E-35 T 14-09-2016 ccrud_RS11165 67c2f123a6c162efeb70a0324df2e42d 396 Gene3D G3DSA:1.20.1250.20 1 133 2.6E-6 T 14-09-2016 ccrud_RS11165 67c2f123a6c162efeb70a0324df2e42d 396 Pfam PF13347 MFS/sugar transport protein 1 135 3.4E-25 T 14-09-2016 ccrud_RS11165 67c2f123a6c162efeb70a0324df2e42d 396 Gene3D G3DSA:3.40.50.300 186 380 5.0E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09435 a6b4c13c505565397129905d18856b75 246 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 21 242 2.9E-54 T 14-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase ccrud_RS09435 a6b4c13c505565397129905d18856b75 246 SUPERFAMILY SSF64438 9 242 3.66E-73 T 14-09-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic ccrud_RS09435 a6b4c13c505565397129905d18856b75 246 PANTHER PTHR30616 6 244 1.8E-81 T 14-09-2016 ccrud_RS09435 a6b4c13c505565397129905d18856b75 246 Gene3D G3DSA:3.60.140.10 8 244 3.3E-82 T 14-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase ccrud_RS09435 a6b4c13c505565397129905d18856b75 246 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 16 241 3.4E-70 T 14-09-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase ccrud_RS09915 21bb4764711aa61604018aae0d1dc19b 330 SUPERFAMILY SSF53822 50 299 1.09E-15 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS09915 21bb4764711aa61604018aae0d1dc19b 330 Gene3D G3DSA:3.40.50.2300 165 298 7.4E-51 T 14-09-2016 ccrud_RS09915 21bb4764711aa61604018aae0d1dc19b 330 Pfam PF04392 ABC transporter substrate binding protein 43 330 4.5E-88 T 14-09-2016 IPR007487 ABC transporter, substrate-binding protein ccrud_RS09915 21bb4764711aa61604018aae0d1dc19b 330 Gene3D G3DSA:3.40.50.2300 41 164 5.9E-51 T 14-09-2016 ccrud_RS09915 21bb4764711aa61604018aae0d1dc19b 330 PANTHER PTHR35271 39 330 1.8E-58 T 14-09-2016 ccrud_RS05855 0cdea4f06f52e5da5ddb46c5b0cc2bd8 124 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 9 85 1.0E-35 T 14-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05855 0cdea4f06f52e5da5ddb46c5b0cc2bd8 124 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 5 84 3.4E-24 T 14-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05855 0cdea4f06f52e5da5ddb46c5b0cc2bd8 124 SUPERFAMILY SSF51344 4 86 7.59E-20 T 14-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05855 0cdea4f06f52e5da5ddb46c5b0cc2bd8 124 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 2 123 17.687 T 14-09-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05855 0cdea4f06f52e5da5ddb46c5b0cc2bd8 124 Gene3D G3DSA:2.60.15.10 3 91 9.3E-25 T 14-09-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05855 0cdea4f06f52e5da5ddb46c5b0cc2bd8 124 PANTHER PTHR13822 1 96 5.9E-18 T 14-09-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05855 0cdea4f06f52e5da5ddb46c5b0cc2bd8 124 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 106 6.8E-25 T 14-09-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05830 b2aac600df4e56e425dc50d36365db46 190 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 36 182 1.3E-27 T 14-09-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 ccrud_RS05830 b2aac600df4e56e425dc50d36365db46 190 SUPERFAMILY SSF81573 88 146 1.44E-12 T 14-09-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain ccrud_RS05830 b2aac600df4e56e425dc50d36365db46 190 Gene3D G3DSA:1.20.5.620 88 146 2.1E-15 T 14-09-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain ccrud_RS05830 b2aac600df4e56e425dc50d36365db46 190 Hamap MF_01398 ATP synthase subunit b [atpF]. 16 182 12.601 T 14-09-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 ccrud_RS05830 b2aac600df4e56e425dc50d36365db46 190 Pfam PF00430 ATP synthase B/B' CF(0) 32 161 8.5E-30 T 14-09-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 ccrud_RS09670 c3c824349cfe167e4568d77601e4d7a2 340 SUPERFAMILY SSF103473 17 333 8.11E-28 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS09670 c3c824349cfe167e4568d77601e4d7a2 340 PANTHER PTHR23501 5 340 2.7E-42 T 14-09-2016 ccrud_RS09670 c3c824349cfe167e4568d77601e4d7a2 340 Pfam PF07690 Major Facilitator Superfamily 39 332 1.3E-19 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS09670 c3c824349cfe167e4568d77601e4d7a2 340 Gene3D G3DSA:1.20.1250.20 32 204 1.7E-22 T 14-09-2016 ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 Pfam PF01327 Polypeptide deformylase 4 156 1.8E-44 T 14-09-2016 IPR023635 Peptide deformylase ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 Hamap MF_00163 Peptide deformylase [def]. 2 171 27.809 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 PIRSF PIRSF004749 1 178 2.1E-42 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 Gene3D G3DSA:3.90.45.10 5 190 9.9E-62 T 14-09-2016 IPR023635 Peptide deformylase ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 PANTHER PTHR10458 1 191 8.4E-59 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 5 157 5.8E-38 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 SUPERFAMILY SSF56420 3 173 1.96E-52 T 14-09-2016 IPR023635 Peptide deformylase ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 PRINTS PR01576 Peptide deformylase signature 33 62 1.6E-30 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 PRINTS PR01576 Peptide deformylase signature 110 128 1.6E-30 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 PRINTS PR01576 Peptide deformylase signature 129 158 1.6E-30 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS12370 b67a4f5cef1d356a6dbbe65caa347ac0 193 PRINTS PR01576 Peptide deformylase signature 98 109 1.6E-30 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS09325 842ec0e2cc7b07cbf0cf42b0e557027d 286 PANTHER PTHR22911:SF41 1 286 4.7E-101 T 14-09-2016 ccrud_RS09325 842ec0e2cc7b07cbf0cf42b0e557027d 286 TIGRFAM TIGR00688 rarD: protein RarD 2 249 2.5E-63 T 14-09-2016 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 ccrud_RS09325 842ec0e2cc7b07cbf0cf42b0e557027d 286 SUPERFAMILY SSF103481 35 136 9.68E-13 T 14-09-2016 ccrud_RS09325 842ec0e2cc7b07cbf0cf42b0e557027d 286 SUPERFAMILY SSF103481 180 273 4.18E-10 T 14-09-2016 ccrud_RS09325 842ec0e2cc7b07cbf0cf42b0e557027d 286 Pfam PF00892 EamA-like transporter family 2 133 1.6E-12 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 ccrud_RS09325 842ec0e2cc7b07cbf0cf42b0e557027d 286 PANTHER PTHR22911 1 286 4.7E-101 T 14-09-2016 ccrud_RS01120 63459fdbed36340cdb332f9a6e4160a9 153 Pfam PF00994 Probable molybdopterin binding domain 5 141 1.5E-24 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS01120 63459fdbed36340cdb332f9a6e4160a9 153 Gene3D G3DSA:3.40.980.10 1 149 5.1E-42 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS01120 63459fdbed36340cdb332f9a6e4160a9 153 PANTHER PTHR10192 5 153 4.4E-33 T 14-09-2016 ccrud_RS01120 63459fdbed36340cdb332f9a6e4160a9 153 SMART SM00852 4 143 2.3E-13 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS01120 63459fdbed36340cdb332f9a6e4160a9 153 SUPERFAMILY SSF53218 1 147 4.84E-34 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS11000 17ae6d4579bc971a0ca17da8369256d6 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 64 222 2.6E-5 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11000 17ae6d4579bc971a0ca17da8369256d6 229 Gene3D G3DSA:1.10.3720.10 16 223 2.4E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11000 17ae6d4579bc971a0ca17da8369256d6 229 PANTHER PTHR30193 31 229 3.3E-12 T 14-09-2016 ccrud_RS11000 17ae6d4579bc971a0ca17da8369256d6 229 SUPERFAMILY SSF161098 11 218 2.88E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11000 17ae6d4579bc971a0ca17da8369256d6 229 PANTHER PTHR30193:SF20 31 229 3.3E-12 T 14-09-2016 ccrud_RS06935 6c5ad82a3cc593ced6a9b20efe85ee3f 581 Gene3D G3DSA:1.20.1560.10 22 330 4.2E-58 T 14-09-2016 ccrud_RS06935 6c5ad82a3cc593ced6a9b20efe85ee3f 581 SMART SM00382 367 553 4.5E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06935 6c5ad82a3cc593ced6a9b20efe85ee3f 581 Pfam PF00664 ABC transporter transmembrane region 38 294 1.7E-40 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS06935 6c5ad82a3cc593ced6a9b20efe85ee3f 581 Gene3D G3DSA:3.40.50.300 343 576 1.6E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06935 6c5ad82a3cc593ced6a9b20efe85ee3f 581 SUPERFAMILY SSF52540 339 577 1.38E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06935 6c5ad82a3cc593ced6a9b20efe85ee3f 581 SUPERFAMILY SSF90123 19 328 1.44E-57 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS06935 6c5ad82a3cc593ced6a9b20efe85ee3f 581 Pfam PF00005 ABC transporter 359 507 1.7E-20 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06935 6c5ad82a3cc593ced6a9b20efe85ee3f 581 PANTHER PTHR24221 26 574 4.2E-122 T 14-09-2016 ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 413 566 7.5E-49 T 14-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 450 469 - T 14-09-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 26 193 4.5E-57 T 14-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 Gene3D G3DSA:3.40.50.1220 211 379 2.7E-67 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 SUPERFAMILY SSF52518 23 205 6.73E-63 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 SUPERFAMILY SSF52467 211 380 6.55E-62 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 PANTHER PTHR18968:SF116 4 598 0.0 T 14-09-2016 ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 26 587 1.2E-231 T 14-09-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 216 351 6.2E-49 T 14-09-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 PANTHER PTHR18968 4 598 0.0 T 14-09-2016 ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 Gene3D G3DSA:3.40.50.970 24 202 1.9E-74 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 SUPERFAMILY SSF52518 391 592 5.0E-66 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS06110 f2176354bad9006bbeba57e20c60f7d0 626 Gene3D G3DSA:3.40.50.970 384 589 3.8E-73 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 Gene3D G3DSA:3.40.50.300 399 614 1.4E-89 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 Gene3D G3DSA:3.40.50.300 349 396 6.1E-119 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 Gene3D G3DSA:3.40.50.300 5 226 6.1E-119 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 SMART SM00958 226 338 3.6E-61 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 SUPERFAMILY SSF52540 6 226 8.79E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 SUPERFAMILY SSF52540 348 395 8.79E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 Hamap MF_01382 Protein translocase subunit SecA [secA]. 3 835 19.166 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 PANTHER PTHR30612 14 500 0.0 T 14-09-2016 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 PANTHER PTHR30612 545 845 0.0 T 14-09-2016 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 Gene3D G3DSA:1.10.3060.10 643 832 2.4E-57 T 14-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 26 819 0.0 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 Gene3D G3DSA:3.90.1440.10 230 348 5.8E-47 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 SUPERFAMILY SSF81767 225 348 1.7E-43 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 Pfam PF01043 SecA preprotein cross-linking domain 231 338 2.4E-36 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 ProSitePatterns PS01312 SecA family signature. 480 495 - T 14-09-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 SMART SM00957 4 382 2.4E-268 T 14-09-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 SUPERFAMILY SSF81886 615 832 7.46E-71 T 14-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 Pfam PF07516 SecA Wing and Scaffold domain 612 831 2.0E-64 T 14-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 SUPERFAMILY SSF52540 398 613 2.96E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 PRINTS PR00906 SecA protein signature 356 373 2.1E-64 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 PRINTS PR00906 SecA protein signature 115 125 2.1E-64 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 PRINTS PR00906 SecA protein signature 61 85 2.1E-64 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 PRINTS PR00906 SecA protein signature 99 113 2.1E-64 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 PRINTS PR00906 SecA protein signature 393 406 2.1E-64 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 PRINTS PR00906 SecA protein signature 319 341 2.1E-64 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 PRINTS PR00906 SecA protein signature 168 188 2.1E-64 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS03695 0cc81c1158916ac9063412e97febb44e 845 Pfam PF07517 SecA DEAD-like domain 6 382 3.8E-126 T 14-09-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 SUPERFAMILY SSF54211 4 170 7.59E-34 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 401 498 1.5E-20 T 14-09-2016 IPR025158 Mg chelatase-related protein, C-terminal domain ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 PANTHER PTHR32039:SF7 1 498 2.2E-171 T 14-09-2016 IPR004482 Mg chelatase-related protein ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 SUPERFAMILY SSF52540 192 497 9.19E-33 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 SMART SM00382 212 392 9.8E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 PANTHER PTHR32039 1 498 2.2E-171 T 14-09-2016 ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 Gene3D G3DSA:3.40.50.300 192 386 3.4E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 Gene3D G3DSA:3.30.230.10 3 170 2.6E-38 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 145 7.3E-37 T 14-09-2016 ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 Pfam PF01078 Magnesium chelatase, subunit ChlI 192 389 7.2E-82 T 14-09-2016 IPR000523 Magnesium chelatase ChlI domain ccrud_RS08845 bcf76269919fc18c369c074be3840e87 507 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 8 497 4.9E-132 T 14-09-2016 IPR004482 Mg chelatase-related protein ccrud_RS02630 51cf691784da2fe3bc6a63511b4ee2ba 120 SUPERFAMILY SSF54843 6 115 2.75E-42 T 14-09-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02630 51cf691784da2fe3bc6a63511b4ee2ba 120 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 10 112 1.9E-48 T 14-09-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 ccrud_RS02630 51cf691784da2fe3bc6a63511b4ee2ba 120 Gene3D G3DSA:3.90.470.10 7 116 2.0E-43 T 14-09-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02630 51cf691784da2fe3bc6a63511b4ee2ba 120 ProSitePatterns PS00464 Ribosomal protein L22 signature. 88 112 - T 14-09-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02630 51cf691784da2fe3bc6a63511b4ee2ba 120 Pfam PF00237 Ribosomal protein L22p/L17e 13 112 1.2E-32 T 14-09-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02630 51cf691784da2fe3bc6a63511b4ee2ba 120 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 6 115 29.857 T 14-09-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 ccrud_RS02630 51cf691784da2fe3bc6a63511b4ee2ba 120 PANTHER PTHR13501 7 112 2.1E-48 T 14-09-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 ProSitePatterns PS00505 Phosphoenolpyruvate carboxykinase (GTP) signature. 270 278 - T 14-09-2016 IPR018091 Phosphoenolpyruvate carboxykinase, GTP-utilising, conserved site GO:0004613 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 PANTHER PTHR11561 1 606 0.0 T 14-09-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 PANTHER PTHR11561:SF0 1 606 0.0 T 14-09-2016 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 Gene3D G3DSA:3.40.449.10 7 245 2.8E-93 T 14-09-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 SUPERFAMILY SSF53795 246 605 1.33E-140 T 14-09-2016 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 Pfam PF00821 Phosphoenolpyruvate carboxykinase 22 605 2.4E-264 T 14-09-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 Hamap MF_00452 Phosphoenolpyruvate carboxykinase [GTP] [pckG]. 11 606 49.367 T 14-09-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 Gene3D G3DSA:3.90.228.20 246 314 9.0E-28 T 14-09-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 Gene3D G3DSA:3.90.228.20 335 606 4.5E-87 T 14-09-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 PIRSF PIRSF001348 1 609 4.6E-287 T 14-09-2016 IPR008209 Phosphoenolpyruvate carboxykinase, GTP-utilising GO:0004611|GO:0005525|GO:0006094 KEGG: 00010+4.1.1.32|KEGG: 00020+4.1.1.32|KEGG: 00620+4.1.1.32|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00138 ccrud_RS13025 83a2df3b4a50fdd5d5c4712429708b98 610 SUPERFAMILY SSF68923 8 245 8.37E-97 T 14-09-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 Gene3D G3DSA:3.30.420.40 232 455 1.6E-33 T 14-09-2016 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 331 351 - T 14-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 SUPERFAMILY SSF53067 3 229 2.25E-51 T 14-09-2016 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 Gene3D G3DSA:3.30.420.40 2 228 5.1E-50 T 14-09-2016 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 PANTHER PTHR10196:SF67 1 420 8.6E-115 T 14-09-2016 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 3 228 8.7E-47 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 TIGRFAM TIGR01312 XylB: xylulokinase 5 423 4.1E-148 T 14-09-2016 IPR006000 Xylulokinase GO:0004856|GO:0005997 KEGG: 00040+2.7.1.17 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 237 419 2.2E-27 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 SUPERFAMILY SSF53067 231 429 1.46E-46 T 14-09-2016 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 PANTHER PTHR10196 1 420 8.6E-115 T 14-09-2016 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 PIRSF PIRSF000538 1 462 2.1E-88 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 ccrud_RS00625 c4a555f30857f66bf5dd6e5e65281f42 464 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 121 133 - T 14-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 ccrud_RS00830 6707d3abf0a6c533ad322f52dd5d13e0 307 SUPERFAMILY SSF51569 30 296 2.56E-44 T 14-09-2016 ccrud_RS00830 6707d3abf0a6c533ad322f52dd5d13e0 307 Gene3D G3DSA:3.20.20.70 30 299 4.1E-44 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 Gene3D G3DSA:1.10.510.10 298 376 1.8E-15 T 14-09-2016 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 SUPERFAMILY SSF48452 539 602 2.63E-5 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 SUPERFAMILY SSF48452 667 717 2.63E-5 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 Pfam PF16918 Protein kinase G tetratricopeptide repeat 447 829 8.9E-101 T 14-09-2016 IPR031636 Protein kinase G, tetratricopeptide repeat containing domain KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 SUPERFAMILY SSF56112 169 439 1.8E-42 T 14-09-2016 IPR011009 Protein kinase-like domain ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 Gene3D G3DSA:1.25.40.10 798 807 3.1E-4 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 Gene3D G3DSA:1.25.40.10 668 723 3.1E-4 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 Gene3D G3DSA:1.25.40.10 564 599 3.1E-4 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 Gene3D G3DSA:3.30.200.20 160 297 7.4E-23 T 14-09-2016 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 SMART SM00220 184 429 1.4E-22 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 PANTHER PTHR24363:SF0 105 556 1.7E-60 T 14-09-2016 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 Pfam PF00069 Protein kinase domain 184 375 4.2E-27 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 ccrud_RS12430 fd98a3918c10e1ce9fe9731c46910534 831 PANTHER PTHR24363 105 556 1.7E-60 T 14-09-2016 ccrud_RS06410 92eefa73625a9e93c471b79f63fc7463 191 PANTHER PTHR21262 1 176 8.6E-31 T 14-09-2016 ccrud_RS06410 92eefa73625a9e93c471b79f63fc7463 191 SUPERFAMILY SSF109604 7 172 6.6E-35 T 14-09-2016 ccrud_RS06410 92eefa73625a9e93c471b79f63fc7463 191 Pfam PF13328 HD domain 11 130 2.4E-19 T 14-09-2016 IPR003607 HD/PDEase domain ccrud_RS06410 92eefa73625a9e93c471b79f63fc7463 191 SMART SM00471 27 136 6.6E-7 T 14-09-2016 IPR003607 HD/PDEase domain ccrud_RS10735 3370c43e90fffb7e992f57dc67416c64 413 PANTHER PTHR30199:SF0 24 413 2.4E-59 T 14-09-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ccrud_RS10735 3370c43e90fffb7e992f57dc67416c64 413 Pfam PF03594 Benzoate membrane transport protein 25 399 1.8E-71 T 14-09-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 ccrud_RS10735 3370c43e90fffb7e992f57dc67416c64 413 PANTHER PTHR30199 24 413 2.4E-59 T 14-09-2016 ccrud_RS11465 6c6ae106c011a0be1963894af315bfab 280 Pfam PF01261 Xylose isomerase-like TIM barrel 20 204 8.5E-19 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11465 6c6ae106c011a0be1963894af315bfab 280 SUPERFAMILY SSF51658 9 248 8.15E-35 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11465 6c6ae106c011a0be1963894af315bfab 280 Gene3D G3DSA:3.20.20.150 13 246 1.3E-49 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11465 6c6ae106c011a0be1963894af315bfab 280 PANTHER PTHR12110 1 243 6.1E-27 T 14-09-2016 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 Gene3D G3DSA:3.50.50.60 256 274 4.7E-20 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 Gene3D G3DSA:3.50.50.60 144 210 4.7E-20 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 PANTHER PTHR23023 308 326 2.3E-49 T 14-09-2016 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 8 205 5.8E-20 T 14-09-2016 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 SUPERFAMILY SSF51905 171 207 2.33E-13 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 SUPERFAMILY SSF51905 4 49 2.33E-13 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 SUPERFAMILY SSF51905 251 380 2.33E-13 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 PANTHER PTHR23023:SF4 308 326 2.3E-49 T 14-09-2016 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 Gene3D G3DSA:3.50.50.60 2 143 7.3E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 Gene3D G3DSA:3.50.50.60 318 381 7.3E-25 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 3.0E-7 T 14-09-2016 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 3.0E-7 T 14-09-2016 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 PANTHER PTHR23023:SF4 1 279 2.3E-49 T 14-09-2016 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 170 194 4.1E-10 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 6 28 4.1E-10 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 PANTHER PTHR23023 1 279 2.3E-49 T 14-09-2016 ccrud_RS12550 eb87648d986b70a84a1595719bfcc3b9 390 SUPERFAMILY SSF51905 1 187 4.03E-37 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 PANTHER PTHR11946:SF87 295 946 0.0 T 14-09-2016 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 Gene3D G3DSA:1.10.730.10 669 843 1.5E-42 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 Gene3D G3DSA:3.40.50.620 20 204 3.7E-145 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 Gene3D G3DSA:3.40.50.620 422 658 3.7E-145 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 19 855 4.0E-249 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 SUPERFAMILY SSF47323 682 910 1.87E-47 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 PANTHER PTHR11946:SF87 3 264 0.0 T 14-09-2016 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 Gene3D G3DSA:3.90.740.10 244 421 1.1E-54 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 Hamap MF_02003 Isoleucine--tRNA ligase [ileS]. 10 1044 13.638 T 14-09-2016 IPR023586 Isoleucine-tRNA ligase, type 2 GO:0004822 KEGG: 00970+6.1.1.5 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 PANTHER PTHR11946 3 264 0.0 T 14-09-2016 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 PANTHER PTHR11946 295 946 0.0 T 14-09-2016 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 SUPERFAMILY SSF52374 20 208 1.4E-128 T 14-09-2016 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 SUPERFAMILY SSF52374 419 660 1.4E-128 T 14-09-2016 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 28 661 1.4E-182 T 14-09-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 Pfam PF08264 Anticodon-binding domain of tRNA 709 849 7.9E-25 T 14-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 SUPERFAMILY SSF47323 968 1051 1.77E-5 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 586 595 3.6E-29 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 243 266 3.6E-29 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 3.6E-29 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 417 432 3.6E-29 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 546 559 3.6E-29 T 14-09-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 ccrud_RS09410 74456c6cb6c50e0b1b1e34957e392579 1054 SUPERFAMILY SSF50677 213 419 5.55E-46 T 14-09-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 ccrud_RS06635 6a2ca615f5668c4eaa6e6901afc38ae3 278 PANTHER PTHR32243:SF7 4 278 1.7E-121 T 14-09-2016 ccrud_RS06635 6a2ca615f5668c4eaa6e6901afc38ae3 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 262 1.1E-16 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS06635 6a2ca615f5668c4eaa6e6901afc38ae3 278 PANTHER PTHR32243 4 278 1.7E-121 T 14-09-2016 ccrud_RS06635 6a2ca615f5668c4eaa6e6901afc38ae3 278 SUPERFAMILY SSF161098 6 278 2.49E-68 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS06635 6a2ca615f5668c4eaa6e6901afc38ae3 278 Gene3D G3DSA:1.10.3720.10 7 264 5.2E-64 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 311 317 - T 14-09-2016 IPR018303 P-type ATPase, phosphorylation site ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 Gene3D G3DSA:3.40.50.1000 282 323 4.8E-48 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 Gene3D G3DSA:3.40.50.1000 432 570 4.8E-48 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PANTHER PTHR24093 15 609 3.9E-178 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 451 461 3.8E-27 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 429 440 3.8E-27 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 528 540 3.8E-27 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 309 323 3.8E-27 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 504 523 3.8E-27 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 167 181 3.8E-27 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 Pfam PF00702 haloacid dehalogenase-like hydrolase 305 518 5.2E-39 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 ProSitePatterns PS01229 Hypothetical cof family signature 2. 504 526 - T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 90 584 5.4E-73 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 SUPERFAMILY SSF81653 126 217 8.5E-24 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 47 603 7.9E-120 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 Gene3D G3DSA:3.40.1110.10 324 431 7.0E-19 T 14-09-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 66 609 7.8E-143 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 SUPERFAMILY SSF81665 548 579 1.57E-11 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 SUPERFAMILY SSF81665 68 120 1.57E-11 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 SUPERFAMILY SSF81665 218 303 1.57E-11 T 14-09-2016 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 504 520 4.3E-8 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 476 492 4.3E-8 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 536 561 4.3E-8 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 SUPERFAMILY SSF56784 307 327 6.19E-48 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 SUPERFAMILY SSF56784 376 602 6.19E-48 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 Gene3D G3DSA:2.70.150.10 69 218 1.1E-25 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 66 606 3.1E-168 T 14-09-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 Pfam PF00122 E1-E2 ATPase 88 300 1.3E-56 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 ccrud_RS05680 4ec3ac3c5aa32f3085e2b9a130f24142 629 PANTHER PTHR24093:SF317 15 609 3.9E-178 T 14-09-2016 ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 47 288 1.3E-86 T 14-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 PRINTS PR00599 Methionine aminopeptidase-1 signature 131 147 2.3E-19 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 PRINTS PR00599 Methionine aminopeptidase-1 signature 201 213 2.3E-19 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 PRINTS PR00599 Methionine aminopeptidase-1 signature 232 244 2.3E-19 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 PRINTS PR00599 Methionine aminopeptidase-1 signature 109 122 2.3E-19 T 14-09-2016 IPR001714 Peptidase M24, methionine aminopeptidase ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 Hamap MF_01974 Methionine aminopeptidase [map]. 44 290 38.781 T 14-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 PANTHER PTHR10804:SF82 14 288 8.1E-129 T 14-09-2016 ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 Gene3D G3DSA:3.90.230.10 46 291 2.6E-89 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 SUPERFAMILY SSF55920 4 291 6.28E-82 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 207 225 - T 14-09-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 PANTHER PTHR10804 14 288 8.1E-129 T 14-09-2016 ccrud_RS08735 f8c8127a358f69ff753b3aad6c19f2d8 294 Pfam PF00557 Metallopeptidase family M24 53 281 7.1E-48 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS07705 9f71091b3015d7623a2fa22b8e5e8eeb 159 Gene3D G3DSA:3.40.50.960 11 155 1.7E-50 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07705 9f71091b3015d7623a2fa22b8e5e8eeb 159 SUPERFAMILY SSF52121 10 156 3.4E-50 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07705 9f71091b3015d7623a2fa22b8e5e8eeb 159 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 12 154 26.189 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07705 9f71091b3015d7623a2fa22b8e5e8eeb 159 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 17 149 1.3E-46 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07705 9f71091b3015d7623a2fa22b8e5e8eeb 159 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 18 149 8.0E-49 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07705 9f71091b3015d7623a2fa22b8e5e8eeb 159 PANTHER PTHR21058 10 159 1.9E-49 T 14-09-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 99 110 1.1E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 190 1.1E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 161 1.1E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 158 186 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 25 42 9.8E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 209 9.8E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 190 9.8E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 99 110 9.8E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 163 9.8E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 238 258 9.8E-30 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 SUPERFAMILY SSF51735 24 273 2.4E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PANTHER PTHR24322:SF57 28 207 1.3E-35 T 14-09-2016 ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 Gene3D G3DSA:3.40.50.720 20 273 5.5E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 PANTHER PTHR24322 28 207 1.3E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10720 b621af2c360f1a338b840f2dc89e3c59 276 Pfam PF00106 short chain dehydrogenase 26 206 1.8E-46 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 Gene3D G3DSA:2.40.30.10 302 395 7.2E-45 T 14-09-2016 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 PRINTS PR00315 GTP-binding elongation factor signature 14 27 2.6E-24 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 PRINTS PR00315 GTP-binding elongation factor signature 96 107 2.6E-24 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 PRINTS PR00315 GTP-binding elongation factor signature 80 90 2.6E-24 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 PRINTS PR00315 GTP-binding elongation factor signature 60 68 2.6E-24 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 PRINTS PR00315 GTP-binding elongation factor signature 133 142 2.6E-24 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 SUPERFAMILY SSF52540 4 215 4.5E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 150 1.1E-13 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 PANTHER PTHR23115 1 396 7.9E-236 T 14-09-2016 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 Pfam PF03144 Elongation factor Tu domain 2 226 295 1.5E-18 T 14-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 SUPERFAMILY SSF50447 206 303 9.03E-30 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 Pfam PF00009 Elongation factor Tu GTP binding domain 10 202 6.6E-57 T 14-09-2016 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 396 1.6E-211 T 14-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 Gene3D G3DSA:2.40.30.10 211 299 4.5E-36 T 14-09-2016 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 396 57.486 T 14-09-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 PANTHER PTHR23115:SF112 1 396 7.9E-236 T 14-09-2016 ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 Gene3D G3DSA:3.40.50.300 4 210 7.2E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 Pfam PF03143 Elongation factor Tu C-terminal domain 302 394 8.5E-31 T 14-09-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 53 68 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site ccrud_RS02590 ce9dec82a49aefd89568380ebc8f9558 396 SUPERFAMILY SSF50465 304 396 2.07E-34 T 14-09-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal ccrud_RS01190 6f20c9d690526336e992fb80825a9982 340 PANTHER PTHR21363 1 291 1.1E-41 T 14-09-2016 ccrud_RS01190 6f20c9d690526336e992fb80825a9982 340 Pfam PF02153 Prephenate dehydrogenase 28 272 2.7E-38 T 14-09-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 ccrud_RS01190 6f20c9d690526336e992fb80825a9982 340 Gene3D G3DSA:3.40.50.720 7 190 3.9E-25 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01190 6f20c9d690526336e992fb80825a9982 340 SUPERFAMILY SSF51735 10 152 1.25E-28 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01190 6f20c9d690526336e992fb80825a9982 340 SUPERFAMILY SSF48179 189 273 1.04E-17 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 SUPERFAMILY SSF52540 4 244 1.17E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 Gene3D G3DSA:3.40.50.300 3 236 2.7E-76 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 SMART SM00382 30 213 2.0E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 PANTHER PTHR24220:SF151 5 285 3.3E-167 T 14-09-2016 ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 Gene3D G3DSA:2.40.50.140 278 334 7.9E-11 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 Pfam PF08402 TOBE domain 273 341 2.7E-8 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 Pfam PF00005 ABC transporter 22 163 1.4E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 PANTHER PTHR24220 5 285 3.3E-167 T 14-09-2016 ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 Gene3D G3DSA:2.40.50.100 335 348 1.7E-5 T 14-09-2016 ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 Gene3D G3DSA:2.40.50.100 264 277 1.7E-5 T 14-09-2016 ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 SUPERFAMILY SSF50331 238 349 1.12E-24 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal ccrud_RS10845 f9ca400022f69b2691ce1fa6bcaca922 350 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 SUPERFAMILY SSF53686 4 306 4.32E-101 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 14-09-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 Gene3D G3DSA:3.40.50.1100 3 43 2.0E-74 T 14-09-2016 ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 Gene3D G3DSA:3.40.50.1100 151 309 2.0E-74 T 14-09-2016 ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 Gene3D G3DSA:3.40.50.1100 44 143 3.6E-39 T 14-09-2016 ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 PANTHER PTHR10314 3 311 3.3E-161 T 14-09-2016 ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 TIGRFAM TIGR01139 cysK: cysteine synthase A 8 306 1.6E-135 T 14-09-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 TIGRFAM TIGR01136 cysKM: cysteine synthase 8 306 1.7E-131 T 14-09-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 8 295 2.4E-66 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS11520 af2f8107b8c8dea6d4249979437d7c41 311 PANTHER PTHR10314:SF110 3 311 3.3E-161 T 14-09-2016 ccrud_RS12900 b51ce90683521fe3b5b82d56730d8da6 166 Pfam PF00866 Ring hydroxylating beta subunit 21 155 4.9E-14 T 14-09-2016 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0003824|GO:0006725|GO:0055114 ccrud_RS12900 b51ce90683521fe3b5b82d56730d8da6 166 Gene3D G3DSA:3.10.450.50 5 165 3.5E-30 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS12900 b51ce90683521fe3b5b82d56730d8da6 166 SUPERFAMILY SSF54427 12 165 4.5E-32 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS13945 13817149dea30556e04964248a0bd3db 317 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 31 279 2.7E-58 T 14-09-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal ccrud_RS13945 13817149dea30556e04964248a0bd3db 317 PANTHER PTHR12428 4 134 9.5E-38 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 ccrud_RS13945 13817149dea30556e04964248a0bd3db 317 PANTHER PTHR12428:SF14 4 134 9.5E-38 T 14-09-2016 ccrud_RS13945 13817149dea30556e04964248a0bd3db 317 PANTHER PTHR12428:SF14 194 279 9.5E-38 T 14-09-2016 ccrud_RS13945 13817149dea30556e04964248a0bd3db 317 PANTHER PTHR12428 194 279 9.5E-38 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 ccrud_RS13945 13817149dea30556e04964248a0bd3db 317 Pfam PF02096 60Kd inner membrane protein 32 279 6.2E-52 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 ccrud_RS03980 21523f9fd9a44ad4f244a49164d55cbb 333 SUPERFAMILY SSF81345 15 328 1.15E-66 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS03980 21523f9fd9a44ad4f244a49164d55cbb 333 PANTHER PTHR30472 9 332 5.2E-147 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03980 21523f9fd9a44ad4f244a49164d55cbb 333 Pfam PF01032 FecCD transport family 36 328 3.8E-64 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03980 21523f9fd9a44ad4f244a49164d55cbb 333 PANTHER PTHR30472:SF27 9 332 5.2E-147 T 14-09-2016 ccrud_RS03980 21523f9fd9a44ad4f244a49164d55cbb 333 Gene3D G3DSA:1.10.3470.10 18 330 1.1E-68 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS13395 fb8056e57c75974a1a8b9276a245137b 213 SUPERFAMILY SSF48498 95 204 3.3E-8 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS13395 fb8056e57c75974a1a8b9276a245137b 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 73 1.4E-10 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS13395 fb8056e57c75974a1a8b9276a245137b 213 SUPERFAMILY SSF46689 16 99 3.23E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS13395 fb8056e57c75974a1a8b9276a245137b 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 49 72 7.8E-7 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS13395 fb8056e57c75974a1a8b9276a245137b 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 41 7.8E-7 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS13395 fb8056e57c75974a1a8b9276a245137b 213 Gene3D G3DSA:1.10.357.10 25 204 4.7E-25 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS13395 fb8056e57c75974a1a8b9276a245137b 213 PANTHER PTHR30328:SF4 17 204 6.0E-24 T 14-09-2016 ccrud_RS13395 fb8056e57c75974a1a8b9276a245137b 213 PANTHER PTHR30328 17 204 6.0E-24 T 14-09-2016 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 SMART SM00898 2 108 9.4E-13 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 PANTHER PTHR22993:SF13 1 252 4.2E-61 T 14-09-2016 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 98 1.3E-7 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 SUPERFAMILY SSF57716 208 253 3.99E-12 T 14-09-2016 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 SUPERFAMILY SSF81624 2 123 2.09E-21 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 122 191 2.1E-13 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 SUPERFAMILY SSF46946 121 187 6.48E-20 T 14-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 PANTHER PTHR22993 1 252 4.2E-61 T 14-09-2016 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 Pfam PF06827 Zinc finger found in FPG and IleRS 226 253 7.9E-6 T 14-09-2016 IPR010663 Zinc finger, FPG/IleRS-type ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 SMART SM01232 122 209 1.9E-24 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 Gene3D G3DSA:3.20.190.10 2 121 1.5E-10 T 14-09-2016 ccrud_RS04175 084d3dbb839a9c4ad9d7173400e098c5 256 Gene3D G3DSA:1.10.8.50 122 253 3.1E-36 T 14-09-2016 ccrud_RS10320 234f6c60d060537ee604bfd7a9ba4047 183 PANTHER PTHR35561 1 180 5.5E-25 T 14-09-2016 ccrud_RS10320 234f6c60d060537ee604bfd7a9ba4047 183 SUPERFAMILY SSF55144 1 178 1.01E-31 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase ccrud_RS10320 234f6c60d060537ee604bfd7a9ba4047 183 Pfam PF02834 LigT like Phosphoesterase 8 80 2.0E-15 T 14-09-2016 IPR014051 Phosphoesterase, HXTX ccrud_RS10320 234f6c60d060537ee604bfd7a9ba4047 183 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 1 177 2.6E-35 T 14-09-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 ccrud_RS10320 234f6c60d060537ee604bfd7a9ba4047 183 PANTHER PTHR35561:SF1 1 180 5.5E-25 T 14-09-2016 ccrud_RS10320 234f6c60d060537ee604bfd7a9ba4047 183 Gene3D G3DSA:3.90.1140.10 1 180 1.0E-43 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase ccrud_RS10320 234f6c60d060537ee604bfd7a9ba4047 183 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 1 178 18.772 T 14-09-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 ccrud_RS01565 69fe956849a1579bda2e2f913c902289 66 Pfam PF14029 Protein of unknown function (DUF4244) 10 63 1.3E-22 T 14-09-2016 IPR025338 Protein of unknown function DUF4244 ccrud_RS07195 d4edec28dad74d20b4d47e18d8d4e950 259 Gene3D G3DSA:3.90.480.10 176 247 5.6E-11 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS07195 d4edec28dad74d20b4d47e18d8d4e950 259 Gene3D G3DSA:3.90.480.10 22 82 5.6E-11 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS07195 d4edec28dad74d20b4d47e18d8d4e950 259 SUPERFAMILY SSF55124 21 64 1.64E-5 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS07195 d4edec28dad74d20b4d47e18d8d4e950 259 SUPERFAMILY SSF55124 177 246 2.29E-14 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS07195 d4edec28dad74d20b4d47e18d8d4e950 259 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 186 241 3.3E-5 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS04195 4dd65fc95a2155968aaacc86b6f55338 391 Gene3D G3DSA:1.20.1250.20 213 380 4.6E-4 T 14-09-2016 ccrud_RS04195 4dd65fc95a2155968aaacc86b6f55338 391 PANTHER PTHR23523 5 391 1.1E-79 T 14-09-2016 ccrud_RS04195 4dd65fc95a2155968aaacc86b6f55338 391 SUPERFAMILY SSF103473 4 379 7.46E-26 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS04195 4dd65fc95a2155968aaacc86b6f55338 391 Gene3D G3DSA:1.20.1250.20 9 193 5.9E-12 T 14-09-2016 ccrud_RS04195 4dd65fc95a2155968aaacc86b6f55338 391 Pfam PF07690 Major Facilitator Superfamily 13 341 7.2E-9 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS04195 4dd65fc95a2155968aaacc86b6f55338 391 PANTHER PTHR23523:SF2 5 391 1.1E-79 T 14-09-2016 ccrud_RS06310 4d50e08ed5aefc80c0b970480b112ab5 394 PANTHER PTHR30408:SF2 99 389 3.4E-17 T 14-09-2016 ccrud_RS06310 4d50e08ed5aefc80c0b970480b112ab5 394 SUPERFAMILY SSF116734 57 208 1.8E-27 T 14-09-2016 ccrud_RS06310 4d50e08ed5aefc80c0b970480b112ab5 394 Pfam PF01420 Type I restriction modification DNA specificity domain 61 191 6.3E-15 T 14-09-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 ccrud_RS06310 4d50e08ed5aefc80c0b970480b112ab5 394 Pfam PF01420 Type I restriction modification DNA specificity domain 214 372 1.2E-26 T 14-09-2016 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 ccrud_RS06310 4d50e08ed5aefc80c0b970480b112ab5 394 PANTHER PTHR30408 99 389 3.4E-17 T 14-09-2016 ccrud_RS06310 4d50e08ed5aefc80c0b970480b112ab5 394 SUPERFAMILY SSF116734 214 390 5.56E-31 T 14-09-2016 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 Pfam PF03144 Elongation factor Tu domain 2 242 316 6.0E-9 T 14-09-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 159 5.6E-22 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 Pfam PF00679 Elongation factor G C-terminus 424 508 1.1E-18 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 Gene3D G3DSA:2.40.50.250 511 605 6.9E-34 T 14-09-2016 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 PRINTS PR00315 GTP-binding elongation factor signature 79 89 2.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 PRINTS PR00315 GTP-binding elongation factor signature 95 106 2.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 PRINTS PR00315 GTP-binding elongation factor signature 8 21 2.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 PRINTS PR00315 GTP-binding elongation factor signature 131 140 2.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 PRINTS PR00315 GTP-binding elongation factor signature 52 60 2.6E-15 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 PANTHER PTHR23115:SF14 207 621 8.0E-226 T 14-09-2016 IPR006298 GTP-binding protein TypA GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 PANTHER PTHR23115:SF14 5 188 8.0E-226 T 14-09-2016 IPR006298 GTP-binding protein TypA GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 SUPERFAMILY SSF52540 4 229 1.91E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 SUPERFAMILY SSF54980 426 541 1.63E-25 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 SUPERFAMILY SSF50447 171 327 8.39E-32 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 PANTHER PTHR23115 207 621 8.0E-226 T 14-09-2016 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 PANTHER PTHR23115 5 188 8.0E-226 T 14-09-2016 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 Pfam PF00009 Elongation factor Tu GTP binding domain 6 218 6.8E-51 T 14-09-2016 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 Gene3D G3DSA:2.40.30.10 229 330 2.1E-27 T 14-09-2016 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 Gene3D G3DSA:3.30.70.240 429 510 2.5E-25 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 Gene3D G3DSA:3.40.50.300 5 228 2.1E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 SUPERFAMILY SSF54980 329 415 8.49E-10 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 6 626 2.6E-252 T 14-09-2016 IPR006298 GTP-binding protein TypA GO:0005525 ccrud_RS05300 2d393d8a3123206da3b27f0aa8a6208e 637 Gene3D G3DSA:3.30.70.870 331 428 5.1E-33 T 14-09-2016 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 4 579 1.7E-162 T 14-09-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 Pfam PF04073 Aminoacyl-tRNA editing domain 265 395 4.9E-20 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 Hamap MF_01569 Proline--tRNA ligase [proS]. 3 584 36.34 T 14-09-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 96 474 1.0E-41 T 14-09-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 Gene3D G3DSA:3.30.930.10 405 487 2.6E-92 T 14-09-2016 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 Gene3D G3DSA:3.30.930.10 12 236 2.6E-92 T 14-09-2016 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 Gene3D G3DSA:3.90.960.10 280 398 2.4E-11 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 SUPERFAMILY SSF55681 423 494 1.49E-85 T 14-09-2016 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 SUPERFAMILY SSF55681 12 239 1.49E-85 T 14-09-2016 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 SUPERFAMILY SSF55826 280 394 3.01E-11 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 PANTHER PTHR11451:SF3 6 246 2.6E-127 T 14-09-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 PANTHER PTHR11451:SF3 415 588 2.6E-127 T 14-09-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 SUPERFAMILY SSF52954 480 585 4.83E-25 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 Pfam PF03129 Anticodon binding domain 491 581 8.7E-14 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 PANTHER PTHR11451 6 246 2.6E-127 T 14-09-2016 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 PANTHER PTHR11451 415 588 2.6E-127 T 14-09-2016 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 PRINTS PR01046 Prolyl-tRNA synthetase signature 106 117 5.7E-14 T 14-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 PRINTS PR01046 Prolyl-tRNA synthetase signature 136 144 5.7E-14 T 14-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 PRINTS PR01046 Prolyl-tRNA synthetase signature 70 88 5.7E-14 T 14-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 PRINTS PR01046 Prolyl-tRNA synthetase signature 146 157 5.7E-14 T 14-09-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 ccrud_RS08670 4c6524ad3485725e1dfaec115d9847b1 588 Gene3D G3DSA:3.40.50.800 488 583 1.3E-23 T 14-09-2016 IPR004154 Anticodon-binding ccrud_RS03490 485ecf21d8accea09e53f673fab13663 543 Gene3D G3DSA:3.90.226.10 288 543 3.6E-92 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS03490 485ecf21d8accea09e53f673fab13663 543 Pfam PF01039 Carboxyl transferase domain 45 541 6.4E-192 T 14-09-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 ccrud_RS03490 485ecf21d8accea09e53f673fab13663 543 Gene3D G3DSA:3.90.226.10 15 269 7.7E-72 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS03490 485ecf21d8accea09e53f673fab13663 543 SUPERFAMILY SSF52096 21 272 3.89E-71 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS03490 485ecf21d8accea09e53f673fab13663 543 SUPERFAMILY SSF52096 288 543 1.55E-82 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS03490 485ecf21d8accea09e53f673fab13663 543 PANTHER PTHR22855:SF14 15 543 6.1E-282 T 14-09-2016 ccrud_RS03490 485ecf21d8accea09e53f673fab13663 543 PANTHER PTHR22855 15 543 6.1E-282 T 14-09-2016 ccrud_RS08840 e1088984b688add4c4ec266b76bc4bab 394 Gene3D G3DSA:3.40.50.450 133 308 2.3E-13 T 14-09-2016 ccrud_RS08840 e1088984b688add4c4ec266b76bc4bab 394 PANTHER PTHR32039 57 87 3.8E-66 T 14-09-2016 ccrud_RS08840 e1088984b688add4c4ec266b76bc4bab 394 PANTHER PTHR32039:SF8 104 320 3.8E-66 T 14-09-2016 ccrud_RS08840 e1088984b688add4c4ec266b76bc4bab 394 PANTHER PTHR32039 104 320 3.8E-66 T 14-09-2016 ccrud_RS08840 e1088984b688add4c4ec266b76bc4bab 394 PANTHER PTHR32039:SF8 57 87 3.8E-66 T 14-09-2016 ccrud_RS08840 e1088984b688add4c4ec266b76bc4bab 394 SUPERFAMILY SSF102405 120 309 1.96E-31 T 14-09-2016 ccrud_RS08840 e1088984b688add4c4ec266b76bc4bab 394 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 69 304 9.8E-62 T 14-09-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 ccrud_RS08840 e1088984b688add4c4ec266b76bc4bab 394 Pfam PF02481 DNA recombination-mediator protein A 72 300 1.5E-70 T 14-09-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 ccrud_RS02160 6d09633cf5c51acf9bb19403699ad560 63 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 9 55 7.5E-21 T 14-09-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 ccrud_RS02160 6d09633cf5c51acf9bb19403699ad560 63 Pfam PF12728 Helix-turn-helix domain 9 56 2.8E-16 T 14-09-2016 ccrud_RS02160 6d09633cf5c51acf9bb19403699ad560 63 Gene3D G3DSA:1.10.10.10 9 56 3.2E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS02160 6d09633cf5c51acf9bb19403699ad560 63 PANTHER PTHR38431 1 63 5.2E-24 T 14-09-2016 ccrud_RS02160 6d09633cf5c51acf9bb19403699ad560 63 SUPERFAMILY SSF46955 9 59 2.75E-6 T 14-09-2016 IPR009061 Putative DNA-binding domain ccrud_RS07975 8ca8b9499d9450cdb71e3fa82361279f 213 SUPERFAMILY SSF56281 1 211 6.68E-47 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS07975 8ca8b9499d9450cdb71e3fa82361279f 213 Pfam PF00753 Metallo-beta-lactamase superfamily 9 194 2.7E-28 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS07975 8ca8b9499d9450cdb71e3fa82361279f 213 Gene3D G3DSA:3.60.15.10 8 204 1.4E-44 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS07975 8ca8b9499d9450cdb71e3fa82361279f 213 PANTHER PTHR11935:SF8 1 210 1.4E-45 T 14-09-2016 ccrud_RS07975 8ca8b9499d9450cdb71e3fa82361279f 213 SMART SM00849 12 194 1.3E-35 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS07975 8ca8b9499d9450cdb71e3fa82361279f 213 PANTHER PTHR11935 1 210 1.4E-45 T 14-09-2016 ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 11 129 1.2E-23 T 14-09-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 PANTHER PTHR13794 4 372 3.3E-98 T 14-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 SMART SM00922 147 245 1.8E-17 T 14-09-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 TIGRFAM TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases 6 373 3.1E-185 T 14-09-2016 IPR013370 Muconate/chloromuconate cycloisomerase GO:0018849|GO:0018850|GO:0030145 ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 Gene3D G3DSA:3.30.390.10 3 133 8.0E-42 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 SUPERFAMILY SSF54826 4 130 1.24E-31 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 PANTHER PTHR13794:SF55 4 372 3.3E-98 T 14-09-2016 ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 Gene3D G3DSA:3.20.20.120 134 363 8.5E-68 T 14-09-2016 IPR029065 Enolase C-terminal domain-like ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 Pfam PF13378 Enolase C-terminal domain-like 151 365 2.7E-54 T 14-09-2016 IPR029065 Enolase C-terminal domain-like ccrud_RS10695 949a005a3affbe4a30fb40677c7997c7 373 SUPERFAMILY SSF51604 129 370 1.44E-66 T 14-09-2016 IPR029065 Enolase C-terminal domain-like ccrud_RS05595 ae9bfc116364b3a5671fdaa620bf8567 524 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 35 447 2.5E-82 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS05595 ae9bfc116364b3a5671fdaa620bf8567 524 Pfam PF00474 Sodium:solute symporter family 35 447 4.6E-96 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS05595 ae9bfc116364b3a5671fdaa620bf8567 524 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 157 182 - T 14-09-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 ccrud_RS05595 ae9bfc116364b3a5671fdaa620bf8567 524 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 6 501 2.4E-208 T 14-09-2016 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 ccrud_RS05595 ae9bfc116364b3a5671fdaa620bf8567 524 PANTHER PTHR11819 4 496 6.1E-180 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS05595 ae9bfc116364b3a5671fdaa620bf8567 524 PANTHER PTHR11819:SF148 4 496 6.1E-180 T 14-09-2016 ccrud_RS05595 ae9bfc116364b3a5671fdaa620bf8567 524 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 429 449 - T 14-09-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 ccrud_RS03705 6604e46accbe49cdc486f063f76b11ca 136 SUPERFAMILY SSF56784 23 123 9.13E-18 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS03705 6604e46accbe49cdc486f063f76b11ca 136 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 54 114 9.0E-8 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS03705 6604e46accbe49cdc486f063f76b11ca 136 Gene3D G3DSA:3.40.50.1000 20 130 8.8E-27 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 SUPERFAMILY SSF53383 12 434 7.58E-109 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 PIRSF PIRSF001434 1 437 4.8E-119 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 14 434 2.3E-189 T 14-09-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 PANTHER PTHR11808:SF12 278 437 2.7E-186 T 14-09-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 PANTHER PTHR11808:SF12 11 247 2.7E-186 T 14-09-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 Gene3D G3DSA:3.90.1150.10 301 437 1.9E-43 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 15 434 1.3E-124 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 PANTHER PTHR11808 278 437 2.7E-186 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 PANTHER PTHR11808 11 247 2.7E-186 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 ccrud_RS03285 1223c7a8f6956cdb326b6eae655aa37a 437 Gene3D G3DSA:3.40.640.10 13 298 7.9E-102 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 1.1E-14 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 9.7E-9 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 9.7E-9 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 Pfam PF00455 DeoR C terminal sensor domain 77 238 7.4E-41 T 14-09-2016 IPR014036 DeoR C-terminal sensor domain ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 SUPERFAMILY SSF46785 4 70 5.0E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 PANTHER PTHR30363:SF1 1 259 3.5E-70 T 14-09-2016 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 SMART SM01134 74 239 1.2E-55 T 14-09-2016 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 SUPERFAMILY SSF100950 78 238 4.44E-26 T 14-09-2016 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 PANTHER PTHR30363 1 259 3.5E-70 T 14-09-2016 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 Gene3D G3DSA:3.40.50.1360 78 222 9.7E-12 T 14-09-2016 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 SMART SM00420 6 58 1.0E-13 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS08335 bee9886cc977aee3419f61fb7498ce6a 259 Gene3D G3DSA:1.10.10.10 5 57 3.8E-9 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07885 22c5f353a321b479e23b0c814c42a5e6 252 SUPERFAMILY SSF52540 2 225 2.17E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07885 22c5f353a321b479e23b0c814c42a5e6 252 Gene3D G3DSA:3.40.50.300 1 225 2.1E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07885 22c5f353a321b479e23b0c814c42a5e6 252 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS07885 22c5f353a321b479e23b0c814c42a5e6 252 PANTHER PTHR24220 3 237 1.2E-82 T 14-09-2016 ccrud_RS07885 22c5f353a321b479e23b0c814c42a5e6 252 Pfam PF00005 ABC transporter 18 166 7.8E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS07885 22c5f353a321b479e23b0c814c42a5e6 252 PANTHER PTHR24220:SF309 3 237 1.2E-82 T 14-09-2016 ccrud_RS07885 22c5f353a321b479e23b0c814c42a5e6 252 SMART SM00382 26 211 8.1E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS01695 28bc9c79c776dffe88c4fca40edc7391 345 PANTHER PTHR22916:SF29 1 294 4.7E-19 T 14-09-2016 ccrud_RS01695 28bc9c79c776dffe88c4fca40edc7391 345 Pfam PF00535 Glycosyl transferase family 2 8 113 9.8E-8 T 14-09-2016 IPR001173 Glycosyltransferase 2-like ccrud_RS01695 28bc9c79c776dffe88c4fca40edc7391 345 PANTHER PTHR22916 1 294 4.7E-19 T 14-09-2016 ccrud_RS01695 28bc9c79c776dffe88c4fca40edc7391 345 Gene3D G3DSA:3.90.550.10 5 233 8.2E-26 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01695 28bc9c79c776dffe88c4fca40edc7391 345 SUPERFAMILY SSF53448 3 124 2.81E-32 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01695 28bc9c79c776dffe88c4fca40edc7391 345 SUPERFAMILY SSF53448 157 231 2.81E-32 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS09175 62fab905fe7bb44b9b7cb3b9ddce040d 211 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 4 210 32.718 T 14-09-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 ccrud_RS09175 62fab905fe7bb44b9b7cb3b9ddce040d 211 PANTHER PTHR21235 5 211 2.7E-81 T 14-09-2016 ccrud_RS09175 62fab905fe7bb44b9b7cb3b9ddce040d 211 PIRSF PIRSF000495 3 211 9.6E-64 T 14-09-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 ccrud_RS09175 62fab905fe7bb44b9b7cb3b9ddce040d 211 Pfam PF00117 Glutamine amidotransferase class-I 7 206 3.7E-18 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 ccrud_RS09175 62fab905fe7bb44b9b7cb3b9ddce040d 211 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 5 209 1.9E-63 T 14-09-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 ccrud_RS09175 62fab905fe7bb44b9b7cb3b9ddce040d 211 Gene3D G3DSA:3.40.50.880 2 210 1.5E-76 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS09175 62fab905fe7bb44b9b7cb3b9ddce040d 211 SUPERFAMILY SSF52317 3 210 2.19E-56 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS09175 62fab905fe7bb44b9b7cb3b9ddce040d 211 PANTHER PTHR21235:SF1 5 211 2.7E-81 T 14-09-2016 ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 Pfam PF00571 CBS domain 272 326 2.5E-6 T 14-09-2016 IPR000644 CBS domain ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 Pfam PF00571 CBS domain 203 258 0.0013 T 14-09-2016 IPR000644 CBS domain ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 Gene3D G3DSA:3.10.580.10 188 333 4.1E-22 T 14-09-2016 ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 SUPERFAMILY SSF54631 191 329 9.85E-34 T 14-09-2016 ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 SUPERFAMILY SSF56176 341 419 1.88E-9 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 PANTHER PTHR22777 1 419 6.8E-139 T 14-09-2016 ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 SMART SM00116 212 261 0.18 T 14-09-2016 IPR000644 CBS domain ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 SMART SM00116 278 326 36.0 T 14-09-2016 IPR000644 CBS domain ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 Pfam PF01595 Domain of unknown function DUF21 10 188 2.7E-30 T 14-09-2016 IPR002550 Domain of unknown function DUF21 ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 Gene3D G3DSA:3.30.465.10 334 422 9.6E-22 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 SMART SM01091 342 433 1.4E-11 T 14-09-2016 IPR005170 Transporter-associated domain ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 PANTHER PTHR22777:SF17 1 419 6.8E-139 T 14-09-2016 ccrud_RS10090 e0a73310c7f88f21f17816e2f4ffd68d 440 Pfam PF03471 Transporter associated domain 343 419 2.7E-7 T 14-09-2016 IPR005170 Transporter-associated domain ccrud_RS08495 e1cf8665e3e8312b256fca191f8bb41a 201 PIRSF PIRSF000847 21 201 8.0E-45 T 14-09-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 ccrud_RS08495 e1cf8665e3e8312b256fca191f8bb41a 201 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 25 198 2.0E-39 T 14-09-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 ccrud_RS08495 e1cf8665e3e8312b256fca191f8bb41a 201 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 73 95 - T 14-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 ccrud_RS08495 e1cf8665e3e8312b256fca191f8bb41a 201 PANTHER PTHR14269 24 196 8.0E-37 T 14-09-2016 ccrud_RS08495 e1cf8665e3e8312b256fca191f8bb41a 201 Pfam PF01066 CDP-alcohol phosphatidyltransferase 25 95 2.0E-14 T 14-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 SUPERFAMILY SSF54368 8 105 3.66E-25 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 PANTHER PTHR20852:SF7 1 446 1.5E-159 T 14-09-2016 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 Gene3D G3DSA:3.30.590.10 110 434 1.9E-116 T 14-09-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 SMART SM01230 106 357 4.5E-125 T 14-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 PANTHER PTHR20852 1 446 1.5E-159 T 14-09-2016 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 SUPERFAMILY SSF55931 108 445 6.08E-118 T 14-09-2016 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 Pfam PF00120 Glutamine synthetase, catalytic domain 107 441 1.5E-128 T 14-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 16 100 2.0E-23 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 234 249 - T 14-09-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09815 bb5d2edcc329d3e36788c0d263b5cdb4 446 Gene3D G3DSA:3.10.20.70 6 109 1.1E-33 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS08615 ba6668cf55a0839facbc5c75aa0d80f0 332 Pfam PF01368 DHH family 20 161 1.6E-13 T 14-09-2016 IPR001667 DDH domain ccrud_RS08615 ba6668cf55a0839facbc5c75aa0d80f0 332 SUPERFAMILY SSF64182 20 307 2.75E-55 T 14-09-2016 ccrud_RS08615 ba6668cf55a0839facbc5c75aa0d80f0 332 Gene3D G3DSA:3.90.1640.10 19 199 1.9E-26 T 14-09-2016 ccrud_RS00525 e254557e555fb5e323586f1ca30beeb6 250 PANTHER PTHR10992 13 249 7.8E-25 T 14-09-2016 ccrud_RS00525 e254557e555fb5e323586f1ca30beeb6 250 SUPERFAMILY SSF53474 7 249 1.4E-36 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00525 e254557e555fb5e323586f1ca30beeb6 250 PANTHER PTHR10992:SF771 13 249 7.8E-25 T 14-09-2016 ccrud_RS00525 e254557e555fb5e323586f1ca30beeb6 250 Gene3D G3DSA:3.40.50.1820 7 249 3.4E-34 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00525 e254557e555fb5e323586f1ca30beeb6 250 Pfam PF12697 Alpha/beta hydrolase family 13 240 5.7E-15 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS06180 e50a4a36c3ce03e08ffdef5cbce64a75 376 TIGRFAM TIGR00543 isochor_syn: isochorismate synthase 108 374 3.6E-71 T 14-09-2016 IPR004561 Isochorismate synthase GO:0008909|GO:0009058 KEGG: 00130+5.4.4.2|MetaCyc: PWY-5837|MetaCyc: PWY-5901|MetaCyc: PWY-6406 ccrud_RS06180 e50a4a36c3ce03e08ffdef5cbce64a75 376 SUPERFAMILY SSF56322 31 375 3.79E-76 T 14-09-2016 IPR005801 ADC synthase GO:0009058 ccrud_RS06180 e50a4a36c3ce03e08ffdef5cbce64a75 376 Gene3D G3DSA:3.60.120.10 100 375 4.3E-74 T 14-09-2016 IPR005801 ADC synthase GO:0009058 ccrud_RS06180 e50a4a36c3ce03e08ffdef5cbce64a75 376 PANTHER PTHR11236:SF21 102 376 4.4E-92 T 14-09-2016 ccrud_RS06180 e50a4a36c3ce03e08ffdef5cbce64a75 376 Pfam PF00425 chorismate binding enzyme 107 366 7.9E-66 T 14-09-2016 IPR015890 Chorismate-utilising enzyme, C-terminal ccrud_RS06180 e50a4a36c3ce03e08ffdef5cbce64a75 376 PANTHER PTHR11236 102 376 4.4E-92 T 14-09-2016 ccrud_RS03150 659bd06d5cfcf776a151a3ff168f41db 132 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 3 91 2.3E-17 T 14-09-2016 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-7591|UniPathway: UPA00799|UniPathway: UPA00802 ccrud_RS07560 3af0ed040e783ed32b616def5d6677ec 421 PANTHER PTHR11601:SF17 14 418 8.7E-168 T 14-09-2016 ccrud_RS07560 3af0ed040e783ed32b616def5d6677ec 421 SUPERFAMILY SSF53383 12 414 1.57E-117 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS07560 3af0ed040e783ed32b616def5d6677ec 421 TIGRFAM TIGR01979 sufS: cysteine desulfurase, SufS family 15 419 2.0E-168 T 14-09-2016 IPR010970 Cysteine desulfurase, SufS GO:0006534|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 ccrud_RS07560 3af0ed040e783ed32b616def5d6677ec 421 Gene3D G3DSA:3.90.1150.10 296 413 4.8E-29 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS07560 3af0ed040e783ed32b616def5d6677ec 421 Pfam PF00266 Aminotransferase class-V 35 407 2.0E-135 T 14-09-2016 IPR000192 Aminotransferase class V domain ccrud_RS07560 3af0ed040e783ed32b616def5d6677ec 421 Gene3D G3DSA:3.40.640.10 45 295 5.8E-80 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS07560 3af0ed040e783ed32b616def5d6677ec 421 PANTHER PTHR11601 14 418 8.7E-168 T 14-09-2016 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 PRINTS PR01100 Shikimate kinase family signature 51 64 1.0E-18 T 14-09-2016 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 PRINTS PR01100 Shikimate kinase family signature 79 87 1.0E-18 T 14-09-2016 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 PRINTS PR01100 Shikimate kinase family signature 27 42 1.0E-18 T 14-09-2016 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 PRINTS PR01100 Shikimate kinase family signature 96 105 1.0E-18 T 14-09-2016 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 PRINTS PR01100 Shikimate kinase family signature 116 133 1.0E-18 T 14-09-2016 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 ProSitePatterns PS01128 Shikimate kinase signature. 80 104 - T 14-09-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 Pfam PF01202 Shikimate kinase 33 187 6.2E-43 T 14-09-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 Gene3D G3DSA:3.40.50.300 25 188 1.6E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 Hamap MF_00109 Shikimate kinase [aroK]. 24 188 26.027 T 14-09-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 SUPERFAMILY SSF52540 26 187 9.31E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 PANTHER PTHR21087:SF0 27 188 2.6E-44 T 14-09-2016 ccrud_RS07850 61de5045db67d79ffb466088271a6e74 190 PANTHER PTHR21087 27 188 2.6E-44 T 14-09-2016 ccrud_RS11155 6e303abb4988d279cdc37ef5c67620e8 472 SUPERFAMILY SSF51556 8 471 5.78E-138 T 14-09-2016 IPR032466 Metal-dependent hydrolase ccrud_RS11155 6e303abb4988d279cdc37ef5c67620e8 472 Pfam PF02614 Glucuronate isomerase 21 462 3.6E-73 T 14-09-2016 IPR003766 Uronate isomerase GO:0006064|GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 ccrud_RS11155 6e303abb4988d279cdc37ef5c67620e8 472 Gene3D G3DSA:1.10.2020.10 52 152 6.7E-26 T 14-09-2016 IPR023177 Uronate isomerase, domain 2 GO:0008880 KEGG: 00040+5.3.1.12|MetaCyc: PWY-7247|MetaCyc: PWY-7248|UniPathway: UPA00246 ccrud_RS11155 6e303abb4988d279cdc37ef5c67620e8 472 PANTHER PTHR30068:SF4 10 472 1.3E-115 T 14-09-2016 ccrud_RS11155 6e303abb4988d279cdc37ef5c67620e8 472 Gene3D G3DSA:3.20.20.140 153 472 1.8E-129 T 14-09-2016 ccrud_RS11155 6e303abb4988d279cdc37ef5c67620e8 472 Gene3D G3DSA:3.20.20.140 7 50 1.8E-129 T 14-09-2016 ccrud_RS11155 6e303abb4988d279cdc37ef5c67620e8 472 PANTHER PTHR30068 10 472 1.3E-115 T 14-09-2016 ccrud_RS07130 86c6ae37ae538db301e64e9ad95ce91e 190 Pfam PF02659 Putative manganese efflux pump 33 183 7.0E-45 T 14-09-2016 IPR003810 Putative manganese efflux pump ccrud_RS07130 86c6ae37ae538db301e64e9ad95ce91e 190 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 187 23.198 T 14-09-2016 IPR022929 Putative manganese efflux pump MntP ccrud_RS07130 86c6ae37ae538db301e64e9ad95ce91e 190 PANTHER PTHR35529 3 190 2.1E-45 T 14-09-2016 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 155 170 4.2E-23 T 14-09-2016 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 289 304 4.2E-23 T 14-09-2016 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 4.2E-23 T 14-09-2016 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 304 320 4.2E-23 T 14-09-2016 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 SUPERFAMILY SSF54373 181 282 9.42E-15 T 14-09-2016 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 PANTHER PTHR13789 8 402 3.1E-86 T 14-09-2016 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 SUPERFAMILY SSF51905 276 384 6.33E-64 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 SUPERFAMILY SSF51905 8 176 6.33E-64 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 Gene3D G3DSA:3.50.50.60 7 182 2.1E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 Gene3D G3DSA:3.50.50.60 276 362 2.1E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS09685 ebbab7f577ef43c3b1f12363588207a4 403 Pfam PF01494 FAD binding domain 8 352 4.5E-25 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 7 157 3.8E-42 T 14-09-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 100 123 - T 14-09-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 SUPERFAMILY SSF69075 326 427 6.67E-17 T 14-09-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 328 426 8.7E-19 T 14-09-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 PANTHER PTHR13812:SF18 1 441 6.9E-77 T 14-09-2016 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 427 1.5E-105 T 14-09-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 PANTHER PTHR13812 1 441 6.9E-77 T 14-09-2016 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 SUPERFAMILY SSF51735 186 312 1.03E-19 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 PIRSF PIRSF000445 2 439 1.8E-125 T 14-09-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 SUPERFAMILY SSF69742 3 159 7.59E-42 T 14-09-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 Gene3D G3DSA:3.40.50.720 173 317 1.3E-25 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 188 311 4.7E-23 T 14-09-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase ccrud_RS02175 d76255db241351417b0edd750f4969d9 464 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 3 427 25.584 T 14-09-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 122 135 - T 14-09-2016 IPR033135 ClpP, histidine active site ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 13 204 39.373 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 PRINTS PR00127 Clp protease catalytic subunit P signature 29 44 1.2E-41 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 PRINTS PR00127 Clp protease catalytic subunit P signature 179 198 1.2E-41 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 PRINTS PR00127 Clp protease catalytic subunit P signature 121 140 1.2E-41 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 PRINTS PR00127 Clp protease catalytic subunit P signature 100 117 1.2E-41 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 PRINTS PR00127 Clp protease catalytic subunit P signature 69 89 1.2E-41 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 Gene3D G3DSA:3.90.226.10 14 202 6.2E-75 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 100 111 - T 14-09-2016 IPR018215 ClpP, Ser active site ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 Pfam PF00574 Clp protease 26 202 3.4E-76 T 14-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 SUPERFAMILY SSF52096 22 205 6.78E-63 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 PANTHER PTHR10381 7 204 3.6E-127 T 14-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA ccrud_RS10740 955b4594b84b899c74d5c2f0871cec71 208 PANTHER PTHR10381:SF7 7 204 3.6E-127 T 14-09-2016 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 PANTHER PTHR11136:SF0 66 508 2.0E-119 T 14-09-2016 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 TIGRFAM TIGR01499 folC: bifunctional protein FolC 77 504 4.8E-96 T 14-09-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 ProSitePatterns PS01012 Folylpolyglutamate synthase signature 2. 198 213 - T 14-09-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 PANTHER PTHR11136 66 508 2.0E-119 T 14-09-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 SUPERFAMILY SSF53623 66 365 2.04E-83 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 Pfam PF08245 Mur ligase middle domain 98 340 5.2E-14 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 SUPERFAMILY SSF53244 368 507 3.21E-26 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 Gene3D G3DSA:3.90.190.20 368 507 6.5E-39 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 Gene3D G3DSA:3.40.1190.10 65 367 1.7E-93 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS10565 7249c85241e5f1cf46ed92e33ce1df65 510 Pfam PF02875 Mur ligase family, glutamate ligase domain 367 440 2.5E-7 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09795 986bd53719619939565719284d23b1b7 441 PANTHER PTHR23512 17 415 1.2E-40 T 14-09-2016 ccrud_RS09795 986bd53719619939565719284d23b1b7 441 Gene3D G3DSA:1.20.1250.20 25 210 1.9E-29 T 14-09-2016 ccrud_RS09795 986bd53719619939565719284d23b1b7 441 SUPERFAMILY SSF103473 5 421 3.66E-59 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS09795 986bd53719619939565719284d23b1b7 441 Pfam PF07690 Major Facilitator Superfamily 32 379 4.1E-32 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS09795 986bd53719619939565719284d23b1b7 441 Gene3D G3DSA:1.20.1250.20 234 423 2.4E-15 T 14-09-2016 ccrud_RS09795 986bd53719619939565719284d23b1b7 441 PANTHER PTHR23512:SF1 17 415 1.2E-40 T 14-09-2016 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 SMART SM00271 3 60 4.0E-30 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 1 378 37.685 T 14-09-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 SUPERFAMILY SSF49493 115 138 2.35E-18 T 14-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 SUPERFAMILY SSF49493 190 270 2.35E-18 T 14-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 Gene3D G3DSA:1.10.287.110 3 104 2.9E-31 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 PRINTS PR00625 DnaJ domain signature 40 60 3.3E-24 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 PRINTS PR00625 DnaJ domain signature 24 39 3.3E-24 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 PRINTS PR00625 DnaJ domain signature 6 24 3.3E-24 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 PRINTS PR00625 DnaJ domain signature 60 79 3.3E-24 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 PANTHER PTHR24078 3 369 7.8E-137 T 14-09-2016 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 Pfam PF00226 DnaJ domain 4 65 4.2E-24 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 4 354 5.1E-114 T 14-09-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 Pfam PF01556 DnaJ C terminal domain 124 338 1.3E-34 T 14-09-2016 IPR002939 Chaperone DnaJ, C-terminal ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 Gene3D G3DSA:2.10.230.10 142 213 2.2E-19 T 14-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 Pfam PF00684 DnaJ central domain 147 211 1.4E-13 T 14-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 SUPERFAMILY SSF49493 262 349 1.11E-18 T 14-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 Gene3D G3DSA:2.60.260.20 105 141 2.8E-17 T 14-09-2016 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 Gene3D G3DSA:2.60.260.20 214 258 2.8E-17 T 14-09-2016 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 SUPERFAMILY SSF57938 134 214 2.35E-18 T 14-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 SUPERFAMILY SSF46565 3 105 4.97E-32 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 PANTHER PTHR24078:SF190 3 369 7.8E-137 T 14-09-2016 ccrud_RS10110 31ff2ad2d07f9d2158199b3dd75efa70 381 Gene3D G3DSA:2.60.260.20 260 338 8.4E-19 T 14-09-2016 ccrud_RS01445 7f1b76fc539337e8c76e7e5210141774 796 Pfam PF00912 Transglycosylase 67 252 8.6E-58 T 14-09-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 ccrud_RS01445 7f1b76fc539337e8c76e7e5210141774 796 PANTHER PTHR32282:SF0 19 668 3.2E-132 T 14-09-2016 ccrud_RS01445 7f1b76fc539337e8c76e7e5210141774 796 PANTHER PTHR32282 19 668 3.2E-132 T 14-09-2016 ccrud_RS01445 7f1b76fc539337e8c76e7e5210141774 796 Gene3D G3DSA:1.10.3810.10 67 255 4.8E-67 T 14-09-2016 ccrud_RS01445 7f1b76fc539337e8c76e7e5210141774 796 SUPERFAMILY SSF56601 291 671 2.72E-68 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS01445 7f1b76fc539337e8c76e7e5210141774 796 SUPERFAMILY SSF56601 234 256 2.72E-68 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS01445 7f1b76fc539337e8c76e7e5210141774 796 Pfam PF00905 Penicillin binding protein transpeptidase domain 360 619 5.6E-21 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 ccrud_RS01445 7f1b76fc539337e8c76e7e5210141774 796 Gene3D G3DSA:3.40.710.10 256 671 6.8E-76 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS01445 7f1b76fc539337e8c76e7e5210141774 796 SUPERFAMILY SSF53955 58 279 1.01E-66 T 14-09-2016 IPR023346 Lysozyme-like domain ccrud_RS04250 a61a5ab3085d86a55de1ad432cd2887d 210 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 21 196 1.0E-55 T 14-09-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 ccrud_RS04250 a61a5ab3085d86a55de1ad432cd2887d 210 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 21 199 26.012 T 14-09-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 ccrud_RS04250 a61a5ab3085d86a55de1ad432cd2887d 210 Pfam PF00551 Formyl transferase 22 193 1.4E-42 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS04250 a61a5ab3085d86a55de1ad432cd2887d 210 SUPERFAMILY SSF53328 22 197 3.4E-49 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS04250 a61a5ab3085d86a55de1ad432cd2887d 210 PANTHER PTHR10520 22 196 3.0E-64 T 14-09-2016 ccrud_RS04250 a61a5ab3085d86a55de1ad432cd2887d 210 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 145 168 - T 14-09-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS04250 a61a5ab3085d86a55de1ad432cd2887d 210 Gene3D G3DSA:3.40.50.170 22 197 3.5E-59 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS13280 33fca4fa9eb3ec220016635af7c77e83 214 SUPERFAMILY SSF56784 5 212 1.06E-32 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS13280 33fca4fa9eb3ec220016635af7c77e83 214 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 192 8.7E-13 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS13280 33fca4fa9eb3ec220016635af7c77e83 214 Gene3D G3DSA:3.40.50.1000 3 212 3.5E-30 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS13280 33fca4fa9eb3ec220016635af7c77e83 214 PANTHER PTHR12725 5 212 1.8E-21 T 14-09-2016 ccrud_RS13280 33fca4fa9eb3ec220016635af7c77e83 214 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 112 189 3.0E-8 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS10055 f45eb1240feb6165f6d99436728dbce4 88 PANTHER PTHR33154:SF9 1 81 9.4E-16 T 14-09-2016 ccrud_RS10055 f45eb1240feb6165f6d99436728dbce4 88 Gene3D G3DSA:1.10.10.10 2 81 1.7E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10055 f45eb1240feb6165f6d99436728dbce4 88 SUPERFAMILY SSF46785 3 76 2.57E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10055 f45eb1240feb6165f6d99436728dbce4 88 PANTHER PTHR33154 1 81 9.4E-16 T 14-09-2016 ccrud_RS10055 f45eb1240feb6165f6d99436728dbce4 88 Pfam PF01022 Bacterial regulatory protein, arsR family 10 55 3.0E-14 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS10055 f45eb1240feb6165f6d99436728dbce4 88 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 37 52 8.6E-13 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS10055 f45eb1240feb6165f6d99436728dbce4 88 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 52 67 8.6E-13 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS10055 f45eb1240feb6165f6d99436728dbce4 88 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 5 20 8.6E-13 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS10055 f45eb1240feb6165f6d99436728dbce4 88 SMART SM00418 3 81 2.8E-18 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS05110 101339f9305a971069c7bb602e1a2a42 254 PANTHER PTHR21631 8 236 5.6E-42 T 14-09-2016 ccrud_RS05110 101339f9305a971069c7bb602e1a2a42 254 SUPERFAMILY SSF51621 4 253 4.93E-58 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS05110 101339f9305a971069c7bb602e1a2a42 254 PANTHER PTHR21631:SF18 8 236 5.6E-42 T 14-09-2016 ccrud_RS05110 101339f9305a971069c7bb602e1a2a42 254 Gene3D G3DSA:3.20.20.60 4 235 1.1E-61 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS05110 101339f9305a971069c7bb602e1a2a42 254 Gene3D G3DSA:1.20.5.510 236 254 8.4E-8 T 14-09-2016 ccrud_RS05110 101339f9305a971069c7bb602e1a2a42 254 Pfam PF13714 Phosphoenolpyruvate phosphomutase 11 244 6.5E-58 T 14-09-2016 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 Gene3D G3DSA:2.40.50.140 129 185 6.0E-27 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 PANTHER PTHR30053 6 186 2.4E-83 T 14-09-2016 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 ProSitePatterns PS01275 Elongation factor P signature. 150 169 - T 14-09-2016 IPR013852 Translation elongation factor P/YeiP, conserved site UniPathway: UPA00345 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 PIRSF PIRSF005901 1 186 6.4E-62 T 14-09-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 Gene3D G3DSA:2.40.50.140 65 126 2.0E-22 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 SUPERFAMILY SSF50249 65 126 1.54E-16 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 SUPERFAMILY SSF50249 129 185 3.77E-17 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 Pfam PF09285 Elongation factor P, C-terminal 129 184 2.7E-24 T 14-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 SMART SM00841 129 184 3.3E-31 T 14-09-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 120 2.1E-21 T 14-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 SMART SM01185 67 121 2.4E-25 T 14-09-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 TIGRFAM TIGR00038 efp: translation elongation factor P 3 185 4.4E-72 T 14-09-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 Hamap MF_00141 Elongation factor P [efp]. 1 185 47.911 T 14-09-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 SUPERFAMILY SSF50104 3 63 1.44E-17 T 14-09-2016 IPR008991 Translation protein SH3-like domain ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 60 2.4E-23 T 14-09-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 ccrud_RS07825 280c9a2b1e0d498ea816c1ec28c5cc55 187 Gene3D G3DSA:2.30.30.30 3 63 8.5E-28 T 14-09-2016 IPR014722 Ribosomal protein L2 domain 2 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 Gene3D G3DSA:3.40.50.80 107 217 1.9E-22 T 14-09-2016 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 266 274 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 SUPERFAMILY SSF54292 212 313 1.7E-19 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 PANTHER PTHR19370 7 241 3.5E-39 T 14-09-2016 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 PANTHER PTHR19370:SF129 7 241 3.5E-39 T 14-09-2016 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 SUPERFAMILY SSF63380 5 99 4.12E-17 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 SUPERFAMILY SSF52343 109 225 7.99E-24 T 14-09-2016 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 241 310 3.0E-9 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 Gene3D G3DSA:3.10.20.30 218 315 3.6E-20 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 Gene3D G3DSA:2.40.30.10 4 100 2.8E-19 T 14-09-2016 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 Pfam PF00175 Oxidoreductase NAD-binding domain 114 203 1.7E-4 T 14-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 PRINTS PR00409 Phthalate dioxygenase reductase family signature 113 132 1.9E-12 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 PRINTS PR00409 Phthalate dioxygenase reductase family signature 138 147 1.9E-12 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 PRINTS PR00409 Phthalate dioxygenase reductase family signature 91 105 1.9E-12 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 PRINTS PR00409 Phthalate dioxygenase reductase family signature 189 197 1.9E-12 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS10610 86a965b3d5f78ec8753880832b4088fd 331 Pfam PF00970 Oxidoreductase FAD-binding domain 10 100 2.5E-5 T 14-09-2016 IPR008333 Oxidoreductase, FAD-binding domain ccrud_RS02040 30897fa207db909d2e5c4e19b410d7a1 217 PANTHER PTHR30055 5 209 7.7E-18 T 14-09-2016 ccrud_RS02040 30897fa207db909d2e5c4e19b410d7a1 217 Gene3D G3DSA:1.10.357.10 8 207 2.5E-20 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS02040 30897fa207db909d2e5c4e19b410d7a1 217 SUPERFAMILY SSF46689 8 61 5.07E-13 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS02040 30897fa207db909d2e5c4e19b410d7a1 217 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 61 2.7E-10 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS02040 30897fa207db909d2e5c4e19b410d7a1 217 PANTHER PTHR30055:SF10 5 209 7.7E-18 T 14-09-2016 ccrud_RS08510 9c6d7165a9bcd580e14998e7029d5d9e 964 SUPERFAMILY SSF46785 853 915 8.71E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08510 9c6d7165a9bcd580e14998e7029d5d9e 964 Pfam PF01580 FtsK/SpoIIIE family 549 748 2.8E-58 T 14-09-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 ccrud_RS08510 9c6d7165a9bcd580e14998e7029d5d9e 964 PANTHER PTHR22683:SF41 312 935 7.8E-204 T 14-09-2016 ccrud_RS08510 9c6d7165a9bcd580e14998e7029d5d9e 964 SMART SM00843 849 913 1.1E-31 T 14-09-2016 IPR018541 FtsK gamma domain ccrud_RS08510 9c6d7165a9bcd580e14998e7029d5d9e 964 Pfam PF09397 Ftsk gamma domain 857 910 1.7E-23 T 14-09-2016 IPR018541 FtsK gamma domain ccrud_RS08510 9c6d7165a9bcd580e14998e7029d5d9e 964 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 124 252 1.2E-8 T 14-09-2016 IPR025199 DNA translocase FtsK, 4TM region ccrud_RS08510 9c6d7165a9bcd580e14998e7029d5d9e 964 SUPERFAMILY SSF52540 522 820 1.43E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08510 9c6d7165a9bcd580e14998e7029d5d9e 964 PANTHER PTHR22683 312 935 7.8E-204 T 14-09-2016 ccrud_RS08510 9c6d7165a9bcd580e14998e7029d5d9e 964 Gene3D G3DSA:3.40.50.300 522 814 1.2E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 Gene3D G3DSA:3.40.50.300 299 316 9.7E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 Gene3D G3DSA:3.40.50.300 65 259 9.7E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 PANTHER PTHR11262:SF4 3 426 3.5E-233 T 14-09-2016 ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 SUPERFAMILY SSF52540 63 406 2.47E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 2 420 52.016 T 14-09-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 Pfam PF06689 ClpX C4-type zinc finger 11 48 2.9E-19 T 14-09-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 SUPERFAMILY SSF57716 11 46 7.56E-11 T 14-09-2016 ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 SMART SM00382 117 270 2.7E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 SMART SM01086 322 416 4.5E-29 T 14-09-2016 IPR019489 Clp ATPase, C-terminal ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 SMART SM00994 10 49 7.6E-22 T 14-09-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 PANTHER PTHR11262 3 426 3.5E-233 T 14-09-2016 ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 3 416 5.0E-196 T 14-09-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 Pfam PF07724 AAA domain (Cdc48 subfamily) 118 315 8.2E-48 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 322 398 1.2E-13 T 14-09-2016 IPR019489 Clp ATPase, C-terminal ccrud_RS10625 dcbb1ac239772bb2c8f176745c04718f 426 Gene3D G3DSA:1.10.8.60 321 419 1.1E-34 T 14-09-2016 ccrud_RS02005 eb20ba97f702478b8c999fcbfbdf7b75 175 SUPERFAMILY SSF143011 1 74 3.01E-5 T 14-09-2016 ccrud_RS02005 eb20ba97f702478b8c999fcbfbdf7b75 175 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 1 68 1.8E-4 T 14-09-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Pfam PF10410 DnaB-helicase binding domain of primase 378 432 1.3E-16 T 14-09-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 PANTHER PTHR30313 6 632 5.4E-125 T 14-09-2016 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 SMART SM00766 484 613 2.7E-20 T 14-09-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Gene3D G3DSA:3.90.580.10 6 104 3.8E-34 T 14-09-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 SMART SM00400 40 94 1.0E-21 T 14-09-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 TIGRFAM TIGR01391 dnaG: DNA primase 8 424 9.6E-111 T 14-09-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Gene3D G3DSA:3.40.1360.10 246 374 3.8E-40 T 14-09-2016 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 PIRSF PIRSF002811 5 624 3.2E-139 T 14-09-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 SUPERFAMILY SSF57783 7 103 6.8E-30 T 14-09-2016 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Gene3D G3DSA:3.90.980.10 120 245 4.6E-36 T 14-09-2016 IPR013264 DNA primase, catalytic core, N-terminal ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Pfam PF13662 Toprim domain 265 338 1.7E-15 T 14-09-2016 IPR006171 Toprim domain ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Pfam PF08275 DNA primase catalytic core, N-terminal domain 130 257 2.8E-36 T 14-09-2016 IPR013264 DNA primase, catalytic core, N-terminal ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Gene3D G3DSA:1.20.50.20 378 433 3.2E-11 T 14-09-2016 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 SUPERFAMILY SSF56731 120 434 4.97E-94 T 14-09-2016 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Pfam PF08278 DNA primase DnaG DnaB-binding 485 612 2.4E-23 T 14-09-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Pfam PF01807 CHC2 zinc finger 9 103 1.3E-28 T 14-09-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 Hamap MF_00974 DNA primase [dnaG]. 7 618 24.506 T 14-09-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 ccrud_RS09995 fc8ecfb9821dc89131019c1ca897031d 633 SMART SM00493 264 342 2.7E-14 T 14-09-2016 IPR006171 Toprim domain ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 70 81 1.2E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 125 133 1.2E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 143 162 1.2E-6 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 PANTHER PTHR24322 11 175 3.3E-31 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 181 2.9E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 2.9E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 135 2.9E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 2.9E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 162 2.9E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 Gene3D G3DSA:3.40.50.720 1 196 1.4E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 Pfam PF00106 short chain dehydrogenase 8 186 5.0E-31 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07035 3e3e18e107fb899a8a49edd332adbe93 236 SUPERFAMILY SSF51735 1 194 1.96E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04530 ef5d1a8d1b98f06944946db7c4488aca 107 PANTHER PTHR33336 1 102 3.3E-13 T 14-09-2016 ccrud_RS04530 ef5d1a8d1b98f06944946db7c4488aca 107 SUPERFAMILY SSF54909 1 89 1.57E-19 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS04530 ef5d1a8d1b98f06944946db7c4488aca 107 Pfam PF03992 Antibiotic biosynthesis monooxygenase 1 75 1.3E-15 T 14-09-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain ccrud_RS04530 ef5d1a8d1b98f06944946db7c4488aca 107 Gene3D G3DSA:3.30.70.900 1 88 3.9E-18 T 14-09-2016 ccrud_RS04620 92749e8886a657e7d6a015a093bd2524 233 SUPERFAMILY SSF52540 1 220 4.42E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04620 92749e8886a657e7d6a015a093bd2524 233 PANTHER PTHR24220 3 233 1.2E-72 T 14-09-2016 ccrud_RS04620 92749e8886a657e7d6a015a093bd2524 233 SMART SM00382 26 217 1.3E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04620 92749e8886a657e7d6a015a093bd2524 233 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 233 3.3E-87 T 14-09-2016 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE ccrud_RS04620 92749e8886a657e7d6a015a093bd2524 233 Pfam PF00005 ABC transporter 20 160 7.7E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS04620 92749e8886a657e7d6a015a093bd2524 233 PANTHER PTHR24220:SF404 3 233 1.2E-72 T 14-09-2016 ccrud_RS04620 92749e8886a657e7d6a015a093bd2524 233 Gene3D G3DSA:3.40.50.300 1 227 9.3E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04110 ed349f038855da185dd820d61b8790e5 256 SUPERFAMILY SSF56601 52 244 3.68E-10 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 Gene3D G3DSA:3.50.7.10 192 371 4.9E-96 T 14-09-2016 IPR027409 GroEL-like apical domain ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 Hamap MF_00600 60 kDa chaperonin [groL]. 1 548 40.071 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 528 8.7E-97 T 14-09-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 SUPERFAMILY SSF48592 411 528 1.93E-76 T 14-09-2016 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 SUPERFAMILY SSF48592 1 135 1.93E-76 T 14-09-2016 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 529 1.3E-239 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 ProSitePatterns PS00296 Chaperonins cpn60 signature. 408 419 - T 14-09-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 Gene3D G3DSA:1.10.560.10 372 521 5.3E-38 T 14-09-2016 IPR027413 GroEL-like equatorial domain ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 PRINTS PR00298 60kDa chaperonin signature 26 52 2.3E-69 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 PRINTS PR00298 60kDa chaperonin signature 353 378 2.3E-69 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 PRINTS PR00298 60kDa chaperonin signature 271 294 2.3E-69 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 PRINTS PR00298 60kDa chaperonin signature 82 109 2.3E-69 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 PRINTS PR00298 60kDa chaperonin signature 401 422 2.3E-69 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 PANTHER PTHR11353 1 548 1.9E-215 T 14-09-2016 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 SUPERFAMILY SSF54849 136 204 2.75E-20 T 14-09-2016 ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 Gene3D G3DSA:1.10.560.10 6 191 2.0E-45 T 14-09-2016 IPR027413 GroEL-like equatorial domain ccrud_RS12260 c3a58035d8f13f68ce0a6b1ef5a87cd9 548 SUPERFAMILY SSF52029 189 379 4.34E-81 T 14-09-2016 IPR027409 GroEL-like apical domain ccrud_RS11860 79759d8c67dea201846d593d783d5b78 256 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 15 206 6.4E-14 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 ccrud_RS11860 79759d8c67dea201846d593d783d5b78 256 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 13 241 2.2E-28 T 14-09-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 ccrud_RS11860 79759d8c67dea201846d593d783d5b78 256 Pfam PF02358 Trehalose-phosphatase 19 227 1.8E-26 T 14-09-2016 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 ccrud_RS11860 79759d8c67dea201846d593d783d5b78 256 PANTHER PTHR10788 9 246 6.5E-15 T 14-09-2016 ccrud_RS11860 79759d8c67dea201846d593d783d5b78 256 Gene3D G3DSA:3.40.50.1000 15 91 5.8E-34 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11860 79759d8c67dea201846d593d783d5b78 256 Gene3D G3DSA:3.40.50.1000 164 250 5.8E-34 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11860 79759d8c67dea201846d593d783d5b78 256 SUPERFAMILY SSF56784 15 244 4.27E-33 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 SUPERFAMILY SSF47979 65 137 9.94E-24 T 14-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 PANTHER PTHR33238 2 228 1.7E-65 T 14-09-2016 ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 Gene3D G3DSA:1.10.60.10 75 136 4.3E-28 T 14-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 Gene3D G3DSA:1.10.10.10 3 72 7.0E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 SMART SM00529 26 125 6.7E-42 T 14-09-2016 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 SMART SM00899 150 225 4.6E-5 T 14-09-2016 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 Gene3D G3DSA:2.30.30.90 149 223 1.2E-28 T 14-09-2016 ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 PANTHER PTHR33238:SF1 2 228 1.7E-65 T 14-09-2016 ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 Pfam PF01325 Iron dependent repressor, N-terminal DNA binding domain 3 61 3.2E-21 T 14-09-2016 IPR022687 DTXR-type HTH domain GO:0003677 ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 SUPERFAMILY SSF50037 130 226 1.19E-20 T 14-09-2016 IPR008988 Transcriptional repressor, C-terminal ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 65 133 1.7E-25 T 14-09-2016 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 ccrud_RS08280 535901793ab63c7b78d6503cf224ff00 228 SUPERFAMILY SSF46785 3 61 1.37E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12525 316ca846c6dc8836f7e074e1f1b59089 240 Gene3D G3DSA:1.10.260.40 3 54 1.7E-7 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS12525 316ca846c6dc8836f7e074e1f1b59089 240 SUPERFAMILY SSF47413 17 54 2.0E-5 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS06045 67e185c6fbe63d846d9e1c1dc4b77f01 212 SUPERFAMILY SSF55729 7 178 2.04E-35 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS06045 67e185c6fbe63d846d9e1c1dc4b77f01 212 PANTHER PTHR13256 1 201 8.9E-76 T 14-09-2016 ccrud_RS06045 67e185c6fbe63d846d9e1c1dc4b77f01 212 PANTHER PTHR13256:SF20 1 201 8.9E-76 T 14-09-2016 ccrud_RS06045 67e185c6fbe63d846d9e1c1dc4b77f01 212 Gene3D G3DSA:3.40.630.30 4 194 3.2E-53 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS06045 67e185c6fbe63d846d9e1c1dc4b77f01 212 Pfam PF13302 Acetyltransferase (GNAT) domain 15 153 1.2E-13 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS03055 915fa56a10567f0ff0dfd0702918c684 99 PANTHER PTHR38839 1 93 1.6E-41 T 14-09-2016 ccrud_RS03055 915fa56a10567f0ff0dfd0702918c684 99 Pfam PF02467 Transcription factor WhiB 17 84 1.9E-21 T 14-09-2016 IPR003482 Transcription factor WhiB ccrud_RS03055 915fa56a10567f0ff0dfd0702918c684 99 PANTHER PTHR38839:SF1 1 93 1.6E-41 T 14-09-2016 ccrud_RS03055 915fa56a10567f0ff0dfd0702918c684 99 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 6 98 14.83 T 14-09-2016 IPR003482 Transcription factor WhiB ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 30 562 6.9E-274 T 14-09-2016 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0008152|GO:0031419 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 PANTHER PTHR23408:SF1 16 704 0.0 T 14-09-2016 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 Pfam PF01642 Methylmalonyl-CoA mutase 32 555 2.0E-227 T 14-09-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 597 726 1.5E-58 T 14-09-2016 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 Pfam PF02310 B12 binding domain 600 709 1.1E-10 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 PANTHER PTHR23408 16 704 0.0 T 14-09-2016 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 SUPERFAMILY SSF52242 561 727 3.14E-54 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 Gene3D G3DSA:3.40.50.280 562 724 6.1E-66 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 Gene3D G3DSA:3.20.20.240 30 557 3.6E-240 T 14-09-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 SUPERFAMILY SSF51703 28 557 1.41E-206 T 14-09-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 ccrud_RS07445 ddbb83d283bdd638f8a47787a36a2db7 737 ProSitePatterns PS00544 Methylmalonyl-CoA mutase signature. 377 402 - T 14-09-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 ccrud_RS05255 9f5dfbf5eb49effbe1bea25e0385a427 297 Gene3D G3DSA:1.10.1040.10 173 296 1.8E-34 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS05255 9f5dfbf5eb49effbe1bea25e0385a427 297 Gene3D G3DSA:3.40.50.720 1 168 6.5E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05255 9f5dfbf5eb49effbe1bea25e0385a427 297 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 150 1.1E-30 T 14-09-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 ccrud_RS05255 9f5dfbf5eb49effbe1bea25e0385a427 297 SUPERFAMILY SSF48179 173 295 5.1E-27 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS05255 9f5dfbf5eb49effbe1bea25e0385a427 297 PANTHER PTHR21708 1 296 2.7E-42 T 14-09-2016 ccrud_RS05255 9f5dfbf5eb49effbe1bea25e0385a427 297 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 173 295 1.2E-24 T 14-09-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 ccrud_RS05255 9f5dfbf5eb49effbe1bea25e0385a427 297 SUPERFAMILY SSF51735 1 133 3.4E-12 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05255 9f5dfbf5eb49effbe1bea25e0385a427 297 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 296 1.3E-73 T 14-09-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 Gene3D G3DSA:3.30.565.10 214 371 2.5E-40 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 SMART SM00387 257 371 6.2E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 PANTHER PTHR24423 24 42 5.6E-72 T 14-09-2016 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 PANTHER PTHR24423 87 369 5.6E-72 T 14-09-2016 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 Gene3D G3DSA:1.10.287.130 137 207 7.5E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 258 370 4.8E-23 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 368 3.1E-17 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 PRINTS PR00344 Bacterial sensor protein C-terminal signature 295 309 3.1E-17 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 PRINTS PR00344 Bacterial sensor protein C-terminal signature 330 348 3.1E-17 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 PRINTS PR00344 Bacterial sensor protein C-terminal signature 313 323 3.1E-17 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 SUPERFAMILY SSF47384 130 211 2.55E-14 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 SMART SM00388 147 211 4.8E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 Pfam PF00672 HAMP domain 75 143 2.9E-12 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 SUPERFAMILY SSF158472 95 143 7.98E-9 T 14-09-2016 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 Pfam PF00512 His Kinase A (phospho-acceptor) domain 148 209 2.9E-9 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 SUPERFAMILY SSF55874 201 369 5.24E-39 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS12005 f5e3b717edbbb85e2fbf4cf2ec0bd6c8 375 SMART SM00304 93 146 1.1E-11 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 SUPERFAMILY SSF47917 383 511 1.83E-39 T 14-09-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 Gene3D G3DSA:2.40.30.20 5 95 4.0E-31 T 14-09-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 6 511 7.1E-235 T 14-09-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 SUPERFAMILY SSF50615 15 97 2.55E-25 T 14-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 Gene3D G3DSA:1.20.150.20 383 511 1.0E-41 T 14-09-2016 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 95 1.5E-15 T 14-09-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 366 375 - T 14-09-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 PANTHER PTHR15184 1 496 8.7E-267 T 14-09-2016 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 382 507 1.8E-40 T 14-09-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 Gene3D G3DSA:3.40.50.300 98 382 5.9E-111 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 4 512 47.749 T 14-09-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 SUPERFAMILY SSF52540 99 381 4.72E-95 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 152 375 5.8E-70 T 14-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS05840 457f1b18db0dccf9884958db7eb778d0 547 PANTHER PTHR15184:SF3 1 496 8.7E-267 T 14-09-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Pfam PF04560 RNA polymerase Rpb2, domain 7 1053 1127 7.9E-27 T 14-09-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Gene3D G3DSA:3.90.1110.10 172 340 1.3E-59 T 14-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 PANTHER PTHR20856 1 52 0.0 T 14-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 239 844 1.7E-295 T 14-09-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Pfam PF04563 RNA polymerase beta subunit 40 412 9.5E-22 T 14-09-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Gene3D G3DSA:2.40.50.150 735 866 1.2E-56 T 14-09-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Pfam PF04561 RNA polymerase Rpb2, domain 2 170 367 5.6E-24 T 14-09-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Pfam PF10385 RNA polymerase beta subunit external 1 domain 504 570 1.6E-23 T 14-09-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Gene3D G3DSA:2.30.150.10 505 570 6.8E-25 T 14-09-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 26 1129 12.11 T 14-09-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 PANTHER PTHR20856:SF20 1 52 0.0 T 14-09-2016 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Pfam PF04565 RNA polymerase Rpb2, domain 3 426 494 2.1E-28 T 14-09-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Gene3D G3DSA:2.40.270.10 700 727 1.2E-72 T 14-09-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Gene3D G3DSA:2.40.270.10 867 1029 1.2E-72 T 14-09-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Pfam PF00562 RNA polymerase Rpb2, domain 6 634 1051 3.4E-156 T 14-09-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Gene3D G3DSA:2.40.50.100 630 699 7.5E-25 T 14-09-2016 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 SUPERFAMILY SSF64484 25 1135 0.0 T 14-09-2016 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 PANTHER PTHR20856:SF20 72 935 0.0 T 14-09-2016 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 PANTHER PTHR20856:SF20 961 1133 0.0 T 14-09-2016 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 ProSitePatterns PS01166 RNA polymerases beta chain signature. 870 882 - T 14-09-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 PANTHER PTHR20856 72 935 0.0 T 14-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 PANTHER PTHR20856 961 1133 0.0 T 14-09-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Gene3D G3DSA:3.90.1100.10 573 627 1.5E-141 T 14-09-2016 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Gene3D G3DSA:3.90.1100.10 356 504 1.5E-141 T 14-09-2016 ccrud_RS02550 3fd422517b4af8b5f52dd62ab73b0881 1165 Gene3D G3DSA:3.90.1100.10 33 170 1.5E-141 T 14-09-2016 ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 Gene3D G3DSA:1.10.10.10 16 77 9.0E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 SMART SM00895 92 192 3.3E-7 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 22 73 1.6E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 SUPERFAMILY SSF48008 89 198 9.42E-15 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 56 3.8E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 56 72 3.8E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 SUPERFAMILY SSF46785 19 86 2.93E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 PANTHER PTHR11751 17 108 9.6E-16 T 14-09-2016 ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 Gene3D G3DSA:1.20.120.530 86 197 1.5E-14 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 SMART SM00345 24 82 3.2E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04465 72b56d37fce8023abf010f3a68238712 232 Pfam PF07729 FCD domain 92 198 2.1E-11 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS11295 e18fa5d14faa8847497aaf753545395c 304 SUPERFAMILY SSF56266 2 302 9.68E-73 T 14-09-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 ccrud_RS11295 e18fa5d14faa8847497aaf753545395c 304 Gene3D G3DSA:3.60.70.12 2 298 1.3E-79 T 14-09-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 ccrud_RS11295 e18fa5d14faa8847497aaf753545395c 304 PANTHER PTHR36512:SF3 1 292 1.2E-86 T 14-09-2016 ccrud_RS11295 e18fa5d14faa8847497aaf753545395c 304 Pfam PF03576 Peptidase family S58 2 292 1.3E-63 T 14-09-2016 IPR005321 Peptidase S58, DmpA ccrud_RS11295 e18fa5d14faa8847497aaf753545395c 304 PANTHER PTHR36512 1 292 1.2E-86 T 14-09-2016 ccrud_RS04625 8376b9b3b72d218d1018538ddc8fe051 204 SUPERFAMILY SSF53178 25 202 9.42E-54 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04625 8376b9b3b72d218d1018538ddc8fe051 204 Pfam PF01195 Peptidyl-tRNA hydrolase 26 200 1.3E-48 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04625 8376b9b3b72d218d1018538ddc8fe051 204 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 26 193 1.8E-45 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04625 8376b9b3b72d218d1018538ddc8fe051 204 PANTHER PTHR17224 6 204 2.3E-58 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04625 8376b9b3b72d218d1018538ddc8fe051 204 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 24 195 30.426 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04625 8376b9b3b72d218d1018538ddc8fe051 204 Gene3D G3DSA:3.40.50.1470 21 203 9.6E-59 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 PANTHER PTHR10992:SF863 159 246 6.0E-19 T 14-09-2016 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 PANTHER PTHR10992:SF863 4 124 6.0E-19 T 14-09-2016 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 PANTHER PTHR10992:SF863 375 381 6.0E-19 T 14-09-2016 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 Pfam PF08386 TAP-like protein 416 506 6.2E-19 T 14-09-2016 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 PANTHER PTHR10992 4 124 6.0E-19 T 14-09-2016 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 PANTHER PTHR10992 375 381 6.0E-19 T 14-09-2016 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 PANTHER PTHR10992:SF863 430 499 6.0E-19 T 14-09-2016 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 SUPERFAMILY SSF53474 155 393 2.4E-23 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 SUPERFAMILY SSF53474 41 123 2.4E-23 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 Pfam PF00561 alpha/beta hydrolase fold 82 336 8.7E-19 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 PANTHER PTHR10992 430 499 6.0E-19 T 14-09-2016 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 PANTHER PTHR10992 159 246 6.0E-19 T 14-09-2016 ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 Gene3D G3DSA:3.40.50.1820 378 499 1.3E-53 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 Gene3D G3DSA:3.40.50.1820 328 329 1.3E-53 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 Gene3D G3DSA:3.40.50.1820 157 261 1.3E-53 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05695 8164740e98118349174ed6b3a0de18c9 519 Gene3D G3DSA:3.40.50.1820 42 125 1.3E-53 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PANTHER PTHR24321 4 92 8.1E-45 T 14-09-2016 ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PANTHER PTHR24321 114 271 8.1E-45 T 14-09-2016 ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 Gene3D G3DSA:3.40.50.720 2 270 3.1E-76 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 Pfam PF00106 short chain dehydrogenase 9 223 7.1E-46 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 159 167 1.1E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 1.1E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 179 198 1.1E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 SUPERFAMILY SSF51735 8 271 2.06E-70 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 200 217 1.5E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 233 253 1.5E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 1.5E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.5E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 169 1.5E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 198 1.5E-40 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PANTHER PTHR24321:SF6 4 92 8.1E-45 T 14-09-2016 ccrud_RS01635 c74baf0ea90103ebac12b91fde9700b5 272 PANTHER PTHR24321:SF6 114 271 8.1E-45 T 14-09-2016 ccrud_RS10000 768d43f2c8700a9f722e78ca157c7d76 154 SUPERFAMILY SSF53933 56 149 1.7E-31 T 14-09-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 ccrud_RS10000 768d43f2c8700a9f722e78ca157c7d76 154 Pfam PF00545 ribonuclease 63 147 2.9E-28 T 14-09-2016 IPR000026 Guanine-specific ribonuclease N1/T1/U2 GO:0003723|GO:0004521 ccrud_RS10000 768d43f2c8700a9f722e78ca157c7d76 154 Gene3D G3DSA:3.10.450.30 57 151 3.4E-35 T 14-09-2016 IPR016191 Ribonuclease/ribotoxin GO:0003723|GO:0004540 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 SUPERFAMILY SSF55347 151 321 5.62E-51 T 14-09-2016 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 197 219 - T 14-09-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 PANTHER PTHR21499:SF2 17 387 5.9E-129 T 14-09-2016 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 Pfam PF00742 Homoserine dehydrogenase 151 334 2.8E-67 T 14-09-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 25 143 1.1E-24 T 14-09-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 Pfam PF01842 ACT domain 369 429 1.4E-10 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 SUPERFAMILY SSF51735 18 172 1.45E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 PIRSF PIRSF000098 16 445 2.1E-163 T 14-09-2016 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 Gene3D G3DSA:3.30.70.260 366 438 1.6E-9 T 14-09-2016 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 Gene3D G3DSA:3.40.50.720 19 162 5.5E-47 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 Gene3D G3DSA:3.30.360.10 163 317 2.2E-54 T 14-09-2016 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 SUPERFAMILY SSF55021 365 437 1.2E-9 T 14-09-2016 ccrud_RS05710 f0eda2db5c1a41627dde1e934b0b3b86 445 PANTHER PTHR21499 17 387 5.9E-129 T 14-09-2016 ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 TIGRFAM TIGR01068 thioredoxin: thioredoxin 8 106 4.3E-35 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 Gene3D G3DSA:3.40.30.10 2 106 4.8E-37 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 Pfam PF00085 Thioredoxin 4 106 5.4E-32 T 14-09-2016 IPR013766 Thioredoxin domain GO:0045454 ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 PANTHER PTHR10438 2 107 2.2E-38 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 ProSitePatterns PS00194 Thioredoxin family active site. 24 42 - T 14-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 PIRSF PIRSF000077 1 107 1.1E-36 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 PRINTS PR00421 Thioredoxin family signature 71 82 1.5E-7 T 14-09-2016 ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 PRINTS PR00421 Thioredoxin family signature 23 31 1.5E-7 T 14-09-2016 ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 PRINTS PR00421 Thioredoxin family signature 31 40 1.5E-7 T 14-09-2016 ccrud_RS13915 1733f08f77104e4189f2a1baa6dc811a 107 SUPERFAMILY SSF52833 2 107 3.28E-37 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS08470 003d56aebf218ffd5396332d9523e35e 230 SUPERFAMILY SSF52540 8 212 1.89E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08470 003d56aebf218ffd5396332d9523e35e 230 PANTHER PTHR24220 6 216 1.1E-62 T 14-09-2016 ccrud_RS08470 003d56aebf218ffd5396332d9523e35e 230 SMART SM00382 27 213 1.2E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08470 003d56aebf218ffd5396332d9523e35e 230 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS08470 003d56aebf218ffd5396332d9523e35e 230 Gene3D G3DSA:3.40.50.300 3 220 5.5E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08470 003d56aebf218ffd5396332d9523e35e 230 Pfam PF00005 ABC transporter 22 162 1.0E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06470 1044703322ebd8ac83235f42fc82b907 549 SMART SM01121 241 549 1.2E-65 T 14-09-2016 IPR033470 Uncharacterised protein, DhaK domain ccrud_RS06470 1044703322ebd8ac83235f42fc82b907 549 SMART SM01120 48 214 9.7E-47 T 14-09-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 ccrud_RS06470 1044703322ebd8ac83235f42fc82b907 549 PANTHER PTHR33434:SF4 12 549 3.0E-88 T 14-09-2016 ccrud_RS06470 1044703322ebd8ac83235f42fc82b907 549 Pfam PF02734 DAK2 domain 48 213 7.5E-33 T 14-09-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 ccrud_RS06470 1044703322ebd8ac83235f42fc82b907 549 Pfam PF13684 Dihydroxyacetone kinase family 245 549 5.7E-52 T 14-09-2016 IPR033470 Uncharacterised protein, DhaK domain ccrud_RS06470 1044703322ebd8ac83235f42fc82b907 549 SUPERFAMILY SSF101473 12 213 1.7E-36 T 14-09-2016 IPR004007 DhaL domain GO:0004371|GO:0006071 ccrud_RS06470 1044703322ebd8ac83235f42fc82b907 549 TIGRFAM TIGR03599 YloV: DAK2 domain fusion protein YloV 25 549 2.7E-143 T 14-09-2016 IPR019986 DAK2 domain-containing protein YloV ccrud_RS06470 1044703322ebd8ac83235f42fc82b907 549 PANTHER PTHR33434 12 549 3.0E-88 T 14-09-2016 ccrud_RS05240 cf145980abfcea6d2b90e182776dc70c 165 Gene3D G3DSA:3.40.30.10 2 164 5.5E-43 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS05240 cf145980abfcea6d2b90e182776dc70c 165 Hamap MF_00269 Probable thiol peroxidase [tpx]. 3 165 38.804 T 14-09-2016 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 ccrud_RS05240 cf145980abfcea6d2b90e182776dc70c 165 SUPERFAMILY SSF52833 1 162 4.43E-41 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS05240 cf145980abfcea6d2b90e182776dc70c 165 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 14-09-2016 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 ccrud_RS05240 cf145980abfcea6d2b90e182776dc70c 165 PANTHER PTHR10681:SF81 5 164 7.4E-49 T 14-09-2016 ccrud_RS05240 cf145980abfcea6d2b90e182776dc70c 165 PANTHER PTHR10681 5 164 7.4E-49 T 14-09-2016 ccrud_RS05240 cf145980abfcea6d2b90e182776dc70c 165 Pfam PF08534 Redoxin 19 161 1.6E-25 T 14-09-2016 IPR013740 Redoxin GO:0016491 ccrud_RS04925 ca8ab99c980cc93c6f59e60133cd9ea1 293 SMART SM00797 24 293 1.1E-66 T 14-09-2016 IPR003778 Carboxyltransferase domain, subdomain A and B ccrud_RS04925 ca8ab99c980cc93c6f59e60133cd9ea1 293 Pfam PF02626 Allophanate hydrolase subunit 2 26 291 8.3E-72 T 14-09-2016 IPR003778 Carboxyltransferase domain, subdomain A and B ccrud_RS04925 ca8ab99c980cc93c6f59e60133cd9ea1 293 PANTHER PTHR18866 153 269 3.7E-18 T 14-09-2016 ccrud_RS04925 ca8ab99c980cc93c6f59e60133cd9ea1 293 SUPERFAMILY SSF50891 182 291 4.93E-12 T 14-09-2016 IPR029000 Cyclophilin-like domain ccrud_RS04925 ca8ab99c980cc93c6f59e60133cd9ea1 293 PANTHER PTHR18866:SF74 153 269 3.7E-18 T 14-09-2016 ccrud_RS04925 ca8ab99c980cc93c6f59e60133cd9ea1 293 Gene3D G3DSA:2.40.100.10 182 291 7.8E-8 T 14-09-2016 IPR029000 Cyclophilin-like domain ccrud_RS12725 3f16b4d3c5cdda40e8056da95cd3783d 221 Gene3D G3DSA:1.10.3720.10 10 218 1.6E-42 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS12725 3f16b4d3c5cdda40e8056da95cd3783d 221 PANTHER PTHR30450:SF6 12 220 7.7E-107 T 14-09-2016 ccrud_RS12725 3f16b4d3c5cdda40e8056da95cd3783d 221 PANTHER PTHR30450 12 220 7.7E-107 T 14-09-2016 ccrud_RS12725 3f16b4d3c5cdda40e8056da95cd3783d 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 39 217 4.8E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS12725 3f16b4d3c5cdda40e8056da95cd3783d 221 SUPERFAMILY SSF161098 12 205 1.18E-45 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 PANTHER PTHR32439:SF0 20 560 3.9E-173 T 14-09-2016 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 SUPERFAMILY SSF56014 418 555 2.62E-36 T 14-09-2016 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 PANTHER PTHR32439 20 560 3.9E-173 T 14-09-2016 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 345 410 2.8E-15 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 96 159 1.6E-17 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 SUPERFAMILY SSF56014 170 330 5.89E-42 T 14-09-2016 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 Gene3D G3DSA:3.30.413.10 170 321 5.4E-40 T 14-09-2016 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 SUPERFAMILY SSF55124 338 414 1.96E-19 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 422 555 1.1E-12 T 14-09-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 170 324 3.3E-37 T 14-09-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 Gene3D G3DSA:3.90.480.10 338 414 4.3E-44 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 Gene3D G3DSA:3.90.480.10 98 167 4.3E-44 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 Gene3D G3DSA:3.30.413.10 420 558 6.0E-37 T 14-09-2016 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 467 483 - T 14-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 SUPERFAMILY SSF55124 20 169 1.05E-35 T 14-09-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 PRINTS PR00397 Sirohaem Fe-binding site signature 467 485 4.4E-8 T 14-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS12665 00cf7710dfec45f4c7c46795ffdda753 561 PRINTS PR00397 Sirohaem Fe-binding site signature 422 440 4.4E-8 T 14-09-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 ccrud_RS06130 9927228bb7f4e006f116394925af986f 605 Pfam PF03235 Protein of unknown function DUF262 10 253 6.1E-23 T 14-09-2016 IPR004919 Domain of unknown function DUF262 ccrud_RS06130 9927228bb7f4e006f116394925af986f 605 PANTHER PTHR37292:SF2 3 590 1.2E-87 T 14-09-2016 ccrud_RS06130 9927228bb7f4e006f116394925af986f 605 PANTHER PTHR37292 3 590 1.2E-87 T 14-09-2016 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 14 712 4.8E-300 T 14-09-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 Gene3D G3DSA:2.60.40.1180 603 712 1.1E-32 T 14-09-2016 IPR013780 Glycosyl hydrolase, all-beta ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 PANTHER PTHR10357 618 713 0.0 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 SUPERFAMILY SSF51445 144 482 2.39E-133 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 SUPERFAMILY SSF51445 511 587 2.39E-133 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 18 104 6.2E-20 T 14-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 PANTHER PTHR10357:SF74 5 590 0.0 T 14-09-2016 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 Pfam PF00128 Alpha amylase, catalytic domain 199 540 4.6E-14 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 SUPERFAMILY SSF51011 603 712 4.24E-25 T 14-09-2016 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 Gene3D G3DSA:2.60.40.10 13 162 4.4E-58 T 14-09-2016 IPR013783 Immunoglobulin-like fold ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 SMART SM00642 169 579 4.6E-6 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 PANTHER PTHR10357:SF74 618 713 0.0 T 14-09-2016 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 PANTHER PTHR10357 5 590 0.0 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 Gene3D G3DSA:3.20.20.80 163 588 2.5E-121 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS09225 bf3bea084e259572ecf6f594ef1ce0da 757 SUPERFAMILY SSF81296 13 158 7.0E-44 T 14-09-2016 IPR014756 Immunoglobulin E-set ccrud_RS04300 9f5bd7b2ab41f09f1177a391a577df18 104 SMART SM00418 15 94 1.0E-16 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS04300 9f5bd7b2ab41f09f1177a391a577df18 104 Gene3D G3DSA:1.10.10.10 10 91 1.8E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04300 9f5bd7b2ab41f09f1177a391a577df18 104 Pfam PF12840 Helix-turn-helix domain 15 73 2.8E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04300 9f5bd7b2ab41f09f1177a391a577df18 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 17 32 7.1E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS04300 9f5bd7b2ab41f09f1177a391a577df18 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 65 80 7.1E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS04300 9f5bd7b2ab41f09f1177a391a577df18 104 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 50 65 7.1E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS04300 9f5bd7b2ab41f09f1177a391a577df18 104 PANTHER PTHR33154 10 104 6.2E-20 T 14-09-2016 ccrud_RS04300 9f5bd7b2ab41f09f1177a391a577df18 104 SUPERFAMILY SSF46785 6 89 9.93E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 ProSitePatterns PS01277 Ribonuclease PH signature. 123 135 - T 14-09-2016 IPR018336 Ribonuclease PH, conserved site ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 SUPERFAMILY SSF55666 159 243 4.71E-26 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 Pfam PF01138 3' exoribonuclease family, domain 1 17 147 9.6E-26 T 14-09-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 PANTHER PTHR11953 4 243 2.5E-82 T 14-09-2016 ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 Gene3D G3DSA:3.30.230.70 9 242 5.0E-36 T 14-09-2016 IPR027408 PNPase/RNase PH domain ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 SUPERFAMILY SSF54211 8 188 9.11E-45 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 9 243 3.3E-119 T 14-09-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 Pfam PF03725 3' exoribonuclease family, domain 2 164 231 3.2E-12 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 Hamap MF_00564 Ribonuclease PH [rph]. 8 244 45.218 T 14-09-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 ccrud_RS11265 51044364b97066c9a7d7680c562abe52 245 PANTHER PTHR11953:SF0 4 243 2.5E-82 T 14-09-2016 ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 SUPERFAMILY SSF47413 3 60 4.01E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 SMART SM00354 2 72 7.5E-27 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 Pfam PF13377 Periplasmic binding protein-like domain 165 327 3.7E-20 T 14-09-2016 ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 SUPERFAMILY SSF53822 59 319 1.68E-45 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 ProSitePatterns PS00356 LacI-type HTH domain signature. 5 23 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 PANTHER PTHR30146 2 327 5.4E-75 T 14-09-2016 ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 Pfam PF00356 Bacterial regulatory proteins, lacI family 5 49 8.8E-15 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 Gene3D G3DSA:3.40.50.2300 62 163 1.3E-27 T 14-09-2016 ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 Gene3D G3DSA:1.10.260.40 3 61 1.3E-21 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS00955 b9262cc6c742401291014a1f2748d33f 330 Gene3D G3DSA:3.40.50.2300 164 328 3.9E-36 T 14-09-2016 ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 SUPERFAMILY SSF55347 108 218 6.1E-37 T 14-09-2016 ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 34 246 2.3E-55 T 14-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 129 146 - T 14-09-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 PANTHER PTHR20836 1 248 1.0E-63 T 14-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 Gene3D G3DSA:3.40.50.720 2 123 9.2E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 112 245 1.6E-27 T 14-09-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 SUPERFAMILY SSF51735 3 134 5.0E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 PIRSF PIRSF000161 1 248 2.2E-59 T 14-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 107 1.2E-26 T 14-09-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 3 247 29.123 T 14-09-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS08565 0bbed7698347e41ba797f4ba40c72ba7 248 Gene3D G3DSA:3.30.360.10 124 215 2.0E-31 T 14-09-2016 ccrud_RS11175 42c963e464b486e341cb4a761317ce7b 385 PANTHER PTHR37043 257 321 1.8E-16 T 14-09-2016 ccrud_RS11175 42c963e464b486e341cb4a761317ce7b 385 PANTHER PTHR37043:SF2 257 321 1.8E-16 T 14-09-2016 ccrud_RS11175 42c963e464b486e341cb4a761317ce7b 385 SMART SM00507 266 318 2.3E-12 T 14-09-2016 IPR003615 HNH nuclease ccrud_RS11175 42c963e464b486e341cb4a761317ce7b 385 Pfam PF01844 HNH endonuclease 288 322 1.4E-8 T 14-09-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 ccrud_RS02530 51b3589ddcf220658c1e83468e7d15b1 126 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 3 126 24.898 T 14-09-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02530 51b3589ddcf220658c1e83468e7d15b1 126 SUPERFAMILY SSF48300 4 61 7.59E-15 T 14-09-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02530 51b3589ddcf220658c1e83468e7d15b1 126 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 126 8.9E-46 T 14-09-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02530 51b3589ddcf220658c1e83468e7d15b1 126 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 63 101 4.0E-13 T 14-09-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 ccrud_RS02530 51b3589ddcf220658c1e83468e7d15b1 126 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 59 126 7.5E-28 T 14-09-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 ccrud_RS02530 51b3589ddcf220658c1e83468e7d15b1 126 SUPERFAMILY SSF54736 54 126 1.92E-22 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ccrud_RS02530 51b3589ddcf220658c1e83468e7d15b1 126 Gene3D G3DSA:1.20.5.710 3 52 1.6E-19 T 14-09-2016 ccrud_RS02530 51b3589ddcf220658c1e83468e7d15b1 126 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 5 52 1.8E-18 T 14-09-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02530 51b3589ddcf220658c1e83468e7d15b1 126 Gene3D G3DSA:3.30.1390.10 53 126 1.1E-30 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ccrud_RS12535 b41e03ba1c68da572f1edd237de89fc8 133 Pfam PF14085 Domain of unknown function (DUF4265) 19 129 2.1E-25 T 14-09-2016 IPR025361 Protein of unknown function DUF4265 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 23 185 3.3E-61 T 14-09-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 Gene3D G3DSA:3.10.20.80 19 94 1.2E-35 T 14-09-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 ProSitePatterns PS00938 Initiation factor 3 signature. 74 87 - T 14-09-2016 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 PANTHER PTHR10938 22 189 6.7E-64 T 14-09-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 23 91 1.9E-30 T 14-09-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 SUPERFAMILY SSF54364 21 94 8.24E-29 T 14-09-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 Gene3D G3DSA:3.30.110.10 95 186 2.8E-36 T 14-09-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 100 183 3.9E-33 T 14-09-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 SUPERFAMILY SSF55200 101 183 4.32E-30 T 14-09-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 ccrud_RS06615 138f920acf7ce101626cb83b09d74948 189 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 11 186 29.635 T 14-09-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 ProSitePatterns PS00211 ABC transporters family signature. 497 511 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 SUPERFAMILY SSF52540 626 923 3.91E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 PANTHER PTHR32282:SF2 1 949 0.0 T 14-09-2016 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Pfam PF00005 ABC transporter 633 869 9.6E-12 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 SMART SM00382 642 907 0.0044 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 PANTHER PTHR32282 1 949 0.0 T 14-09-2016 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:3.30.1490.20 201 239 9.1E-26 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:3.30.1490.20 131 154 9.1E-26 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 SUPERFAMILY SSF52540 10 205 1.64E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 SUPERFAMILY SSF52540 440 579 1.64E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 5 934 0.0 T 14-09-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:1.20.1580.10 412 487 8.7E-50 T 14-09-2016 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:1.20.1580.10 92 130 8.7E-50 T 14-09-2016 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:1.20.1580.10 255 289 8.7E-50 T 14-09-2016 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 ProSitePatterns PS00211 ABC transporters family signature. 839 853 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:3.40.50.300 4 52 1.7E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:3.40.50.300 622 678 2.8E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:3.40.50.300 830 947 2.8E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:3.40.50.300 488 605 1.7E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:1.10.8.280 292 411 1.8E-29 T 14-09-2016 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Gene3D G3DSA:1.20.1580.10 703 829 3.2E-55 T 14-09-2016 ccrud_RS06605 bc7447e0ebf57fdec59a3a0aca3ee628 949 Hamap MF_00205 UvrABC system protein A [uvrA]. 2 949 22.34 T 14-09-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 SUPERFAMILY SSF53822 64 322 3.26E-58 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 Gene3D G3DSA:1.10.260.40 5 56 2.5E-24 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 SMART SM00354 4 74 2.7E-28 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 PANTHER PTHR30146 4 323 3.4E-93 T 14-09-2016 ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 Pfam PF13377 Periplasmic binding protein-like domain 172 322 3.1E-33 T 14-09-2016 ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 Gene3D G3DSA:3.40.50.2300 173 322 6.3E-35 T 14-09-2016 ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 SUPERFAMILY SSF47413 3 62 6.49E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 Pfam PF00356 Bacterial regulatory proteins, lacI family 6 51 1.9E-18 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS00920 5e03dbff8fbb4652eb995a3f95a811ce 325 Gene3D G3DSA:3.40.50.2300 57 172 9.0E-35 T 14-09-2016 ccrud_RS04560 d634324449c8a06e6ef5254d0384603c 482 PANTHER PTHR10907:SF56 29 340 3.0E-17 T 14-09-2016 ccrud_RS04560 d634324449c8a06e6ef5254d0384603c 482 PANTHER PTHR10907 29 340 3.0E-17 T 14-09-2016 ccrud_RS04560 d634324449c8a06e6ef5254d0384603c 482 SUPERFAMILY SSF53474 126 409 9.61E-22 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS04560 d634324449c8a06e6ef5254d0384603c 482 PANTHER PTHR10907 362 457 3.0E-17 T 14-09-2016 ccrud_RS04560 d634324449c8a06e6ef5254d0384603c 482 Pfam PF00756 Putative esterase 136 405 8.6E-24 T 14-09-2016 IPR000801 Putative esterase ccrud_RS04560 d634324449c8a06e6ef5254d0384603c 482 PANTHER PTHR10907:SF56 362 457 3.0E-17 T 14-09-2016 ccrud_RS04560 d634324449c8a06e6ef5254d0384603c 482 Gene3D G3DSA:3.40.50.1820 126 416 1.4E-74 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 SUPERFAMILY SSF53697 5 538 3.89E-203 T 14-09-2016 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 42 516 41.108 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 489 506 - T 14-09-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 Gene3D G3DSA:1.10.1390.10 499 539 6.9E-18 T 14-09-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 Pfam PF00342 Phosphoglucose isomerase 48 533 6.6E-206 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 261 274 - T 14-09-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 PANTHER PTHR11469 1 540 4.7E-282 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 146 165 3.7E-54 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 457 475 3.7E-54 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 475 489 3.7E-54 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 257 275 3.7E-54 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 334 355 3.7E-54 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 PRINTS PR00662 Glucose-6-phosphate isomerase signature 489 502 3.7E-54 T 14-09-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 Gene3D G3DSA:3.40.50.10490 95 285 9.5E-82 T 14-09-2016 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 Gene3D G3DSA:3.40.50.10490 6 94 8.9E-132 T 14-09-2016 ccrud_RS04200 d13c21635e2edca86730c4b52f0ffd5e 540 Gene3D G3DSA:3.40.50.10490 289 498 8.9E-132 T 14-09-2016 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 Pfam PF00849 RNA pseudouridylate synthase 141 275 7.0E-23 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 146 307 4.6E-44 T 14-09-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 Pfam PF01479 S4 domain 81 124 1.2E-12 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 SUPERFAMILY SSF55120 129 318 1.55E-41 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 SMART SM00363 80 149 7.6E-9 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 182 196 - T 14-09-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 SUPERFAMILY SSF55174 76 144 3.73E-14 T 14-09-2016 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 PANTHER PTHR21600:SF2 73 320 1.4E-74 T 14-09-2016 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 PANTHER PTHR21600 73 320 1.4E-74 T 14-09-2016 ccrud_RS06840 8ae6d5580753e1d6a0f0e9c1f9336854 320 Gene3D G3DSA:3.10.290.10 78 142 1.0E-22 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 SMART SM00421 167 224 8.1E-22 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 Pfam PF00196 Bacterial regulatory proteins, luxR family 168 224 6.2E-18 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 Gene3D G3DSA:3.40.50.2300 2 117 5.2E-27 T 14-09-2016 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 ProSitePatterns PS00622 LuxR-type HTH domain signature. 184 211 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 Pfam PF00072 Response regulator receiver domain 4 114 1.9E-20 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 PANTHER PTHR26402 2 131 1.1E-54 T 14-09-2016 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 SUPERFAMILY SSF52172 1 131 2.28E-26 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 PANTHER PTHR26402 149 224 1.1E-54 T 14-09-2016 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 200 212 6.9E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 184 6.9E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 200 6.9E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 SMART SM00448 2 113 4.9E-22 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 SUPERFAMILY SSF46894 164 229 1.9E-21 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 Gene3D G3DSA:1.10.10.10 118 229 4.1E-33 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 PANTHER PTHR26402:SF458 2 131 1.1E-54 T 14-09-2016 ccrud_RS03105 ce10770df22ca7bd600aae96acfdc364 230 PANTHER PTHR26402:SF458 149 224 1.1E-54 T 14-09-2016 ccrud_RS10165 8b18f347cf10cd55bcbac14a02c3f6e6 394 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 145 160 - T 14-09-2016 IPR019826 Carboxylesterase type B, active site ccrud_RS10165 8b18f347cf10cd55bcbac14a02c3f6e6 394 PANTHER PTHR11559:SF142 52 184 1.2E-32 T 14-09-2016 ccrud_RS10165 8b18f347cf10cd55bcbac14a02c3f6e6 394 PANTHER PTHR11559 52 184 1.2E-32 T 14-09-2016 ccrud_RS10165 8b18f347cf10cd55bcbac14a02c3f6e6 394 Pfam PF00135 Carboxylesterase family 44 187 1.1E-36 T 14-09-2016 IPR002018 Carboxylesterase, type B ccrud_RS10165 8b18f347cf10cd55bcbac14a02c3f6e6 394 Gene3D G3DSA:3.40.50.1820 6 376 1.5E-50 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS10165 8b18f347cf10cd55bcbac14a02c3f6e6 394 SUPERFAMILY SSF53474 5 372 3.78E-53 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS03810 64ba58bf2551670e531a2cf666b8f9e9 478 PANTHER PTHR39420 1 469 3.8E-135 T 14-09-2016 ccrud_RS03810 64ba58bf2551670e531a2cf666b8f9e9 478 Pfam PF10103 Zinicin-like metallopeptidase 77 427 3.5E-106 T 14-09-2016 IPR018766 Zinicin-like metallopeptidase type 2 ccrud_RS03810 64ba58bf2551670e531a2cf666b8f9e9 478 TIGRFAM TIGR03624 TIGR03624: putative hydrolase 77 430 4.2E-119 T 14-09-2016 IPR018766 Zinicin-like metallopeptidase type 2 ccrud_RS03810 64ba58bf2551670e531a2cf666b8f9e9 478 SUPERFAMILY SSF55486 76 428 3.81E-103 T 14-09-2016 ccrud_RS03810 64ba58bf2551670e531a2cf666b8f9e9 478 PANTHER PTHR39420:SF2 1 469 3.8E-135 T 14-09-2016 ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 Pfam PF00580 UvrD/REP helicase N-terminal domain 30 300 1.1E-77 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 Gene3D G3DSA:1.10.486.10 417 590 2.4E-45 T 14-09-2016 ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 Gene3D G3DSA:3.40.50.300 602 693 1.5E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 Gene3D G3DSA:3.40.50.300 315 416 1.5E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 PANTHER PTHR11070 16 554 3.2E-218 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 PANTHER PTHR11070 578 769 3.2E-218 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 Pfam PF13361 UvrD-like helicase C-terminal domain 306 663 1.5E-71 T 14-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 Gene3D G3DSA:3.40.50.300 213 314 1.3E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 Gene3D G3DSA:3.40.50.300 25 130 1.3E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 PANTHER PTHR11070:SF7 16 554 3.2E-218 T 14-09-2016 ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 PANTHER PTHR11070:SF7 578 769 3.2E-218 T 14-09-2016 ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 Gene3D G3DSA:1.10.10.160 135 212 8.1E-24 T 14-09-2016 IPR013986 DExx box DNA helicase domain ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 TIGRFAM TIGR01073 pcrA: ATP-dependent DNA helicase PcrA 27 767 6.4E-283 T 14-09-2016 IPR005751 ATP-dependent DNA helicase PcrA GO:0004003|GO:0005737|GO:0006268 ccrud_RS04220 a7fc8a1b3ffdf54dd237f2cae92ac5c7 777 SUPERFAMILY SSF52540 25 692 2.95E-170 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09395 6609da42ed51d2810366731d61ef236d 298 SUPERFAMILY SSF103481 55 148 6.8E-7 T 14-09-2016 ccrud_RS09395 6609da42ed51d2810366731d61ef236d 298 SUPERFAMILY SSF103481 192 289 4.58E-6 T 14-09-2016 ccrud_RS09395 6609da42ed51d2810366731d61ef236d 298 Pfam PF00892 EamA-like transporter family 154 289 1.1E-11 T 14-09-2016 IPR000620 EamA domain GO:0016020|GO:0016021 ccrud_RS09395 6609da42ed51d2810366731d61ef236d 298 PANTHER PTHR22911 2 289 1.5E-25 T 14-09-2016 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 SMART SM00382 99 314 9.8E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 SMART SM00963 1 86 9.3E-35 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 PANTHER PTHR11564:SF7 1 445 7.4E-238 T 14-09-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 Pfam PF00448 SRP54-type protein, GTPase domain 100 309 8.6E-68 T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 438 1.2E-175 T 14-09-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 Gene3D G3DSA:1.10.260.30 341 442 2.7E-35 T 14-09-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 PANTHER PTHR11564 1 445 7.4E-238 T 14-09-2016 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 5.5E-23 T 14-09-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 282 295 - T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 SMART SM00962 100 309 7.5E-107 T 14-09-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 SUPERFAMILY SSF52540 42 368 4.02E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 Pfam PF02978 Signal peptide binding domain 341 438 2.6E-29 T 14-09-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 Gene3D G3DSA:1.20.120.140 2 89 6.9E-35 T 14-09-2016 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 Gene3D G3DSA:3.40.50.300 94 310 3.5E-76 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 493 33.882 T 14-09-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 ccrud_RS08980 36fe7a3a8b33abd131e31fb78d03954d 540 SUPERFAMILY SSF47446 341 441 1.96E-32 T 14-09-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 ccrud_RS00440 a2323c31f5ef3ca29787d900a6eb95ff 227 Pfam PF09339 IclR helix-turn-helix domain 12 62 2.3E-14 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS00440 a2323c31f5ef3ca29787d900a6eb95ff 227 SUPERFAMILY SSF46785 11 79 3.16E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00440 a2323c31f5ef3ca29787d900a6eb95ff 227 Gene3D G3DSA:1.10.10.10 3 76 6.3E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00440 a2323c31f5ef3ca29787d900a6eb95ff 227 SMART SM00346 10 97 1.0E-12 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS00440 a2323c31f5ef3ca29787d900a6eb95ff 227 SUPERFAMILY SSF55781 75 226 1.11E-17 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS00440 a2323c31f5ef3ca29787d900a6eb95ff 227 Gene3D G3DSA:3.30.450.40 77 226 1.3E-13 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS00440 a2323c31f5ef3ca29787d900a6eb95ff 227 PANTHER PTHR30136 6 227 7.2E-25 T 14-09-2016 ccrud_RS07190 5cc3d6f7caaf9dd1e7b147772103d4e3 435 Pfam PF03583 Secretory lipase 163 415 1.4E-36 T 14-09-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 ccrud_RS07190 5cc3d6f7caaf9dd1e7b147772103d4e3 435 SUPERFAMILY SSF53474 167 421 1.51E-19 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS07190 5cc3d6f7caaf9dd1e7b147772103d4e3 435 Gene3D G3DSA:3.40.50.1820 353 432 4.3E-12 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS07190 5cc3d6f7caaf9dd1e7b147772103d4e3 435 Gene3D G3DSA:3.40.50.1820 122 263 4.3E-12 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS07190 5cc3d6f7caaf9dd1e7b147772103d4e3 435 PANTHER PTHR34853 86 401 4.8E-41 T 14-09-2016 ccrud_RS07190 5cc3d6f7caaf9dd1e7b147772103d4e3 435 PIRSF PIRSF029171 19 408 3.2E-30 T 14-09-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 ccrud_RS03320 692dc2fed98b063548e201ec3d0c76b0 331 Gene3D G3DSA:1.10.3470.10 5 327 1.5E-95 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS03320 692dc2fed98b063548e201ec3d0c76b0 331 Pfam PF01032 FecCD transport family 16 325 1.3E-86 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03320 692dc2fed98b063548e201ec3d0c76b0 331 PANTHER PTHR30472:SF31 7 331 5.0E-107 T 14-09-2016 ccrud_RS03320 692dc2fed98b063548e201ec3d0c76b0 331 PANTHER PTHR30472 7 331 5.0E-107 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03320 692dc2fed98b063548e201ec3d0c76b0 331 SUPERFAMILY SSF81345 5 326 5.23E-77 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 Gene3D G3DSA:3.30.300.30 406 506 2.8E-26 T 14-09-2016 ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 Pfam PF00501 AMP-binding enzyme 13 410 4.7E-109 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 Gene3D G3DSA:3.40.50.980 171 327 1.1E-45 T 14-09-2016 ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 Pfam PF13193 AMP-binding enzyme C-terminal domain 420 498 1.6E-16 T 14-09-2016 IPR025110 AMP-binding enzyme C-terminal domain ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 PANTHER PTHR24096:SF240 12 512 2.1E-161 T 14-09-2016 ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 SUPERFAMILY SSF56801 11 507 1.11E-149 T 14-09-2016 ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 Gene3D G3DSA:2.30.38.10 328 401 1.8E-26 T 14-09-2016 ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 Gene3D G3DSA:3.40.50.980 13 170 1.3E-38 T 14-09-2016 ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 ProSitePatterns PS00455 Putative AMP-binding domain signature. 165 176 - T 14-09-2016 IPR020845 AMP-binding, conserved site ccrud_RS01465 2cb8e92be271e786753dbbb6167a81a0 512 PANTHER PTHR24096 12 512 2.1E-161 T 14-09-2016 ccrud_RS04695 97fb0499821d86356c3b508b034b725d 396 PANTHER PTHR24421:SF22 114 390 5.9E-30 T 14-09-2016 ccrud_RS04695 97fb0499821d86356c3b508b034b725d 396 Pfam PF07730 Histidine kinase 213 277 1.8E-16 T 14-09-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 ccrud_RS04695 97fb0499821d86356c3b508b034b725d 396 PANTHER PTHR24421 114 390 5.9E-30 T 14-09-2016 ccrud_RS01775 f943df9c0fc8b29c1e828ca726415fe1 319 PIRSF PIRSF017082 1 319 3.8E-60 T 14-09-2016 IPR005064 Bordetella uptake gene GO:0030288 ccrud_RS01775 f943df9c0fc8b29c1e828ca726415fe1 319 Gene3D G3DSA:3.40.190.10 125 223 4.7E-4 T 14-09-2016 ccrud_RS01775 f943df9c0fc8b29c1e828ca726415fe1 319 PANTHER PTHR30349:SF1 1 277 3.8E-43 T 14-09-2016 ccrud_RS01775 f943df9c0fc8b29c1e828ca726415fe1 319 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 48 315 8.4E-45 T 14-09-2016 IPR005064 Bordetella uptake gene GO:0030288 ccrud_RS01775 f943df9c0fc8b29c1e828ca726415fe1 319 PANTHER PTHR30349 1 277 3.8E-43 T 14-09-2016 ccrud_RS01775 f943df9c0fc8b29c1e828ca726415fe1 319 SUPERFAMILY SSF53850 114 275 2.68E-10 T 14-09-2016 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 ProSitePatterns PS00216 Sugar transport proteins signature 1. 274 290 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 Pfam PF00083 Sugar (and other) transporter 256 396 3.1E-7 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 PRINTS PR01035 Tetracycline resistance protein signature 27 43 1.2E-9 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 PRINTS PR01035 Tetracycline resistance protein signature 344 367 1.2E-9 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 PRINTS PR01035 Tetracycline resistance protein signature 256 276 1.2E-9 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 PRINTS PR01035 Tetracycline resistance protein signature 142 164 1.2E-9 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 PRINTS PR01035 Tetracycline resistance protein signature 84 108 1.2E-9 T 14-09-2016 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 SUPERFAMILY SSF103473 17 397 2.35E-72 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 Gene3D G3DSA:1.20.1250.20 18 194 4.3E-35 T 14-09-2016 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 Pfam PF07690 Major Facilitator Superfamily 22 249 1.8E-28 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 Gene3D G3DSA:1.20.1250.20 222 400 1.3E-29 T 14-09-2016 ccrud_RS05495 9f44ed08a26f0ba5032d8de1b59336be 405 PANTHER PTHR23501 18 395 9.5E-49 T 14-09-2016 ccrud_RS11810 dc24aea1a0866c9dddbe2c3f0c66b84d 168 SUPERFAMILY SSF53474 46 114 3.44E-13 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11810 dc24aea1a0866c9dddbe2c3f0c66b84d 168 Pfam PF00326 Prolyl oligopeptidase family 43 114 4.8E-7 T 14-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 ccrud_RS11810 dc24aea1a0866c9dddbe2c3f0c66b84d 168 Gene3D G3DSA:3.40.50.1820 42 115 6.2E-13 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PRINTS PR00096 Glutamine amidotransferase superfamily signature 48 57 7.3E-13 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PRINTS PR00096 Glutamine amidotransferase superfamily signature 181 194 7.3E-13 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 7.3E-13 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 Pfam PF00117 Glutamine amidotransferase class-I 5 202 2.5E-37 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 Gene3D G3DSA:3.40.50.880 3 203 6.1E-46 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PANTHER PTHR11922 1 199 1.1E-44 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 45 59 1.0E-4 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 1.0E-4 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 3 202 1.2E-38 T 14-09-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PRINTS PR00097 Anthranilate synthase component II signature 4 18 5.1E-22 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PRINTS PR00097 Anthranilate synthase component II signature 181 194 5.1E-22 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PRINTS PR00097 Anthranilate synthase component II signature 75 86 5.1E-22 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PRINTS PR00097 Anthranilate synthase component II signature 48 57 5.1E-22 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 PANTHER PTHR11922:SF7 1 199 1.1E-44 T 14-09-2016 ccrud_RS13695 3182aba1a39a81463d5e12e015f1e17d 209 SUPERFAMILY SSF52317 3 204 1.02E-38 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 SUPERFAMILY SSF50249 26 128 2.14E-22 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 SUPERFAMILY SSF50249 275 365 9.7E-26 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 SMART SM00316 32 103 1.8E-15 T 14-09-2016 IPR022967 RNA-binding domain, S1 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 SMART SM00316 205 275 6.4E-28 T 14-09-2016 IPR022967 RNA-binding domain, S1 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 SMART SM00316 290 361 4.0E-25 T 14-09-2016 IPR022967 RNA-binding domain, S1 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 SMART SM00316 119 186 9.2E-12 T 14-09-2016 IPR022967 RNA-binding domain, S1 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 Pfam PF00575 S1 RNA binding domain 31 103 4.8E-15 T 14-09-2016 IPR003029 S1 domain GO:0003676 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 Pfam PF00575 S1 RNA binding domain 289 361 4.5E-24 T 14-09-2016 IPR003029 S1 domain GO:0003676 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 Pfam PF00575 S1 RNA binding domain 204 275 4.8E-26 T 14-09-2016 IPR003029 S1 domain GO:0003676 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 Pfam PF00575 S1 RNA binding domain 119 186 9.5E-15 T 14-09-2016 IPR003029 S1 domain GO:0003676 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PANTHER PTHR10724 31 371 6.6E-121 T 14-09-2016 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PRINTS PR00681 Ribosomal protein S1 signature 305 324 3.6E-87 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PRINTS PR00681 Ribosomal protein S1 signature 344 362 3.6E-87 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PRINTS PR00681 Ribosomal protein S1 signature 100 119 3.6E-87 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PRINTS PR00681 Ribosomal protein S1 signature 124 140 3.6E-87 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PRINTS PR00681 Ribosomal protein S1 signature 227 248 3.6E-87 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PRINTS PR00681 Ribosomal protein S1 signature 52 66 3.6E-87 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PRINTS PR00681 Ribosomal protein S1 signature 34 52 3.6E-87 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PRINTS PR00681 Ribosomal protein S1 signature 141 158 3.6E-87 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PRINTS PR00681 Ribosomal protein S1 signature 170 190 3.6E-87 T 14-09-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 Gene3D G3DSA:2.40.50.140 207 281 3.3E-30 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 Gene3D G3DSA:2.40.50.140 282 365 3.3E-29 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 SUPERFAMILY SSF50249 205 287 2.61E-27 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 PANTHER PTHR10724:SF6 31 371 6.6E-121 T 14-09-2016 ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 Gene3D G3DSA:2.40.50.140 25 104 3.0E-18 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 Gene3D G3DSA:2.40.50.140 111 187 3.5E-16 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06545 48b19f97b41644b677e6e0ed176f5f6b 486 SUPERFAMILY SSF50249 106 189 3.13E-15 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS01845 30cf29163f25c457e4bb7817af4651d1 377 PIRSF PIRSF000390 1 377 3.6E-97 T 14-09-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase ccrud_RS01845 30cf29163f25c457e4bb7817af4651d1 377 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 14 369 1.1E-92 T 14-09-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase ccrud_RS01845 30cf29163f25c457e4bb7817af4651d1 377 PANTHER PTHR30244 1 376 6.1E-107 T 14-09-2016 ccrud_RS01845 30cf29163f25c457e4bb7817af4651d1 377 PANTHER PTHR30244:SF18 1 376 6.1E-107 T 14-09-2016 ccrud_RS01845 30cf29163f25c457e4bb7817af4651d1 377 Gene3D G3DSA:3.90.1150.10 251 374 3.1E-37 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS01845 30cf29163f25c457e4bb7817af4651d1 377 Gene3D G3DSA:3.40.640.10 5 249 2.2E-81 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS01845 30cf29163f25c457e4bb7817af4651d1 377 SUPERFAMILY SSF53383 5 373 8.74E-94 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS10665 bbcdafa3ee99a21db9658fbf4a4b6bcf 122 PANTHER PTHR33570:SF2 2 122 5.6E-42 T 14-09-2016 ccrud_RS10665 bbcdafa3ee99a21db9658fbf4a4b6bcf 122 PANTHER PTHR33570 2 122 5.6E-42 T 14-09-2016 ccrud_RS10665 bbcdafa3ee99a21db9658fbf4a4b6bcf 122 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 2 120 4.0E-53 T 14-09-2016 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44|UniPathway: UPA00157 ccrud_RS10665 bbcdafa3ee99a21db9658fbf4a4b6bcf 122 SUPERFAMILY SSF69118 1 118 1.44E-33 T 14-09-2016 IPR029032 AhpD-like ccrud_RS10665 bbcdafa3ee99a21db9658fbf4a4b6bcf 122 Gene3D G3DSA:1.20.1290.10 2 119 6.1E-24 T 14-09-2016 IPR029032 AhpD-like ccrud_RS10665 bbcdafa3ee99a21db9658fbf4a4b6bcf 122 Pfam PF02627 Carboxymuconolactone decarboxylase family 33 115 1.9E-22 T 14-09-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 13 227 1.2E-69 T 14-09-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 PANTHER PTHR10108 13 227 1.1E-67 T 14-09-2016 ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 SUPERFAMILY SSF53335 8 153 4.14E-41 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 SUPERFAMILY SSF53335 181 227 4.14E-41 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 Gene3D G3DSA:3.40.50.150 13 223 1.1E-43 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 135 149 - T 14-09-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 Pfam PF01209 ubiE/COQ5 methyltransferase family 13 227 3.5E-58 T 14-09-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 4 227 32.936 T 14-09-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 24 39 - T 14-09-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 ccrud_RS02450 e0e766165b46213c621089e5ba03b728 230 PANTHER PTHR10108:SF24 13 227 1.1E-67 T 14-09-2016 ccrud_RS09460 a5e436661a7e08ed437c3ab234ae824e 544 Pfam PF01098 Cell cycle protein 46 405 2.1E-84 T 14-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 ccrud_RS09460 a5e436661a7e08ed437c3ab234ae824e 544 PANTHER PTHR30474 19 422 2.6E-106 T 14-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 ccrud_RS09460 a5e436661a7e08ed437c3ab234ae824e 544 PANTHER PTHR30474:SF2 19 422 2.6E-106 T 14-09-2016 ccrud_RS09460 a5e436661a7e08ed437c3ab234ae824e 544 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 363 387 - T 14-09-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 17 228 1.2E-26 T 14-09-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 120 7.3E-23 T 14-09-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 PANTHER PTHR11921 3 245 1.3E-70 T 14-09-2016 ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 58 66 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 PANTHER PTHR11921:SF13 3 245 1.3E-70 T 14-09-2016 ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 Pfam PF12838 4Fe-4S dicluster domain 158 227 1.8E-10 T 14-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 Gene3D G3DSA:1.10.1060.10 109 241 1.0E-19 T 14-09-2016 ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 SUPERFAMILY SSF54292 1 116 2.75E-17 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 159 170 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 SUPERFAMILY SSF46548 121 241 2.09E-20 T 14-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 ccrud_RS01985 4aab13ab82c76b665ceec3efa86e2a7f 249 Gene3D G3DSA:3.10.20.30 1 108 9.3E-23 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS10830 3bda07e19d83c0215058f1f0a87fdca0 245 Gene3D G3DSA:3.20.20.60 4 238 5.8E-52 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS10830 3bda07e19d83c0215058f1f0a87fdca0 245 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 26 197 4.0E-26 T 14-09-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 ccrud_RS10830 3bda07e19d83c0215058f1f0a87fdca0 245 PANTHER PTHR30502 1 233 3.9E-47 T 14-09-2016 ccrud_RS10830 3bda07e19d83c0215058f1f0a87fdca0 245 SUPERFAMILY SSF51621 3 233 4.71E-51 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 PIRSF PIRSF000732 8 567 1.2E-144 T 14-09-2016 IPR024692 Phosphotransferase system, enzyme I GO:0008965|GO:0009401 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 442 460 - T 14-09-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 PANTHER PTHR22931:SF15 54 545 4.3E-126 T 14-09-2016 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 PANTHER PTHR22931 54 545 4.3E-126 T 14-09-2016 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 Pfam PF00391 PEP-utilising enzyme, mobile domain 161 231 1.5E-20 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 Gene3D G3DSA:3.20.20.60 261 565 1.6E-88 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 SUPERFAMILY SSF51621 253 544 8.9E-84 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 SUPERFAMILY SSF52009 131 242 8.76E-30 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 Pfam PF05524 PEP-utilising enzyme, N-terminal 14 132 6.2E-18 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 SUPERFAMILY SSF47831 41 149 7.85E-18 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 190 201 - T 14-09-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 442 457 1.1E-20 T 14-09-2016 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 459 474 1.1E-20 T 14-09-2016 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 295 314 1.1E-20 T 14-09-2016 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 495 507 1.1E-20 T 14-09-2016 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 Gene3D G3DSA:3.50.30.10 141 255 1.4E-31 T 14-09-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 Gene3D G3DSA:1.10.274.10 43 140 3.1E-16 T 14-09-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 261 535 2.2E-76 T 14-09-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 ccrud_RS08345 fc5326ca85122086e198b3d1622b464e 568 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 13 558 2.8E-116 T 14-09-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 ccrud_RS03555 1c9a1d651f90402f1b158e67b3a0b475 140 Gene3D G3DSA:3.10.180.10 1 139 5.9E-40 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS03555 1c9a1d651f90402f1b158e67b3a0b475 140 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 106 2.8E-7 T 14-09-2016 ccrud_RS03555 1c9a1d651f90402f1b158e67b3a0b475 140 SUPERFAMILY SSF54593 2 138 6.94E-26 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS11595 a426b6e53dd870bdb3dcaef7f6036e9e 257 Pfam PF00005 ABC transporter 20 175 3.5E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS11595 a426b6e53dd870bdb3dcaef7f6036e9e 257 PANTHER PTHR24220:SF585 5 255 9.5E-129 T 14-09-2016 ccrud_RS11595 a426b6e53dd870bdb3dcaef7f6036e9e 257 SMART SM00382 28 222 6.8E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS11595 a426b6e53dd870bdb3dcaef7f6036e9e 257 SUPERFAMILY SSF52540 4 244 1.73E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11595 a426b6e53dd870bdb3dcaef7f6036e9e 257 PANTHER PTHR24220 5 255 9.5E-129 T 14-09-2016 ccrud_RS11595 a426b6e53dd870bdb3dcaef7f6036e9e 257 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 4 257 2.5E-114 T 14-09-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 ccrud_RS11595 a426b6e53dd870bdb3dcaef7f6036e9e 257 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS11595 a426b6e53dd870bdb3dcaef7f6036e9e 257 Gene3D G3DSA:3.40.50.300 3 249 5.3E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05435 6957506c80380632725b510e4c640da5 430 PANTHER PTHR11911 115 419 8.8E-40 T 14-09-2016 ccrud_RS05435 6957506c80380632725b510e4c640da5 430 Gene3D G3DSA:3.10.580.10 287 412 3.5E-15 T 14-09-2016 ccrud_RS05435 6957506c80380632725b510e4c640da5 430 SUPERFAMILY SSF54631 287 418 6.82E-22 T 14-09-2016 ccrud_RS05435 6957506c80380632725b510e4c640da5 430 PANTHER PTHR11911:SF108 115 419 8.8E-40 T 14-09-2016 ccrud_RS05435 6957506c80380632725b510e4c640da5 430 SMART SM00924 185 288 8.2E-34 T 14-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain ccrud_RS05435 6957506c80380632725b510e4c640da5 430 SUPERFAMILY SSF50346 6 85 1.18E-9 T 14-09-2016 IPR011033 PRC-barrel-like ccrud_RS05435 6957506c80380632725b510e4c640da5 430 SUPERFAMILY SSF158791 173 283 3.53E-30 T 14-09-2016 ccrud_RS05435 6957506c80380632725b510e4c640da5 430 Pfam PF03448 MgtE intracellular N domain 185 286 3.6E-26 T 14-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain ccrud_RS05435 6957506c80380632725b510e4c640da5 430 Gene3D G3DSA:1.25.60.10 173 281 1.9E-37 T 14-09-2016 ccrud_RS08460 11a851765c1a787306d08db9e16ffa78 71 Pfam PF11248 Protein of unknown function (DUF3046) 1 61 5.4E-25 T 14-09-2016 IPR021408 Protein of unknown function DUF3046 ccrud_RS07835 9efb9af6cae86102167a62f0ea9b36c8 317 Gene3D G3DSA:3.30.420.10 101 257 2.6E-28 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS07835 9efb9af6cae86102167a62f0ea9b36c8 317 PANTHER PTHR32552 103 262 1.4E-16 T 14-09-2016 ccrud_RS07835 9efb9af6cae86102167a62f0ea9b36c8 317 SUPERFAMILY SSF53098 105 267 8.6E-32 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS07835 9efb9af6cae86102167a62f0ea9b36c8 317 Pfam PF00665 Integrase core domain 105 221 5.6E-22 T 14-09-2016 IPR001584 Integrase, catalytic core GO:0015074 ccrud_RS00295 9a5aba71264d835e57d600523de49aca 280 Pfam PF09359 VTC domain 26 266 3.4E-41 T 14-09-2016 IPR018966 VTC domain ccrud_RS00295 9a5aba71264d835e57d600523de49aca 280 SUPERFAMILY SSF55154 29 115 3.04E-7 T 14-09-2016 IPR033469 CYTH-like domain ccrud_RS00295 9a5aba71264d835e57d600523de49aca 280 SUPERFAMILY SSF55154 161 239 3.04E-7 T 14-09-2016 IPR033469 CYTH-like domain ccrud_RS00295 9a5aba71264d835e57d600523de49aca 280 Gene3D G3DSA:2.40.320.10 29 206 2.6E-4 T 14-09-2016 IPR023577 CYTH domain ccrud_RS04420 1fb4455b9e65b1cfe18f5b0e65e2fe52 211 Pfam PF04199 Putative cyclase 4 150 8.0E-26 T 14-09-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 ccrud_RS04420 1fb4455b9e65b1cfe18f5b0e65e2fe52 211 PANTHER PTHR31118:SF9 2 205 4.3E-26 T 14-09-2016 ccrud_RS04420 1fb4455b9e65b1cfe18f5b0e65e2fe52 211 PANTHER PTHR31118 2 205 4.3E-26 T 14-09-2016 ccrud_RS04420 1fb4455b9e65b1cfe18f5b0e65e2fe52 211 Gene3D G3DSA:3.50.30.50 1 205 3.0E-50 T 14-09-2016 ccrud_RS04420 1fb4455b9e65b1cfe18f5b0e65e2fe52 211 SUPERFAMILY SSF102198 1 203 5.62E-49 T 14-09-2016 ccrud_RS09930 3ce8f86b098f47376058d96722572037 350 SUPERFAMILY SSF53474 49 334 2.39E-43 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS09930 3ce8f86b098f47376058d96722572037 350 Pfam PF12697 Alpha/beta hydrolase family 74 323 1.2E-20 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS09930 3ce8f86b098f47376058d96722572037 350 Gene3D G3DSA:3.40.50.1820 48 335 4.7E-43 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS09930 3ce8f86b098f47376058d96722572037 350 PANTHER PTHR10992 1 209 9.1E-36 T 14-09-2016 ccrud_RS09930 3ce8f86b098f47376058d96722572037 350 PANTHER PTHR10992 230 336 9.1E-36 T 14-09-2016 ccrud_RS07240 173f9db7496df2b47604c2c54a7fa281 118 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 2 47 3.7E-17 T 14-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 ccrud_RS07240 173f9db7496df2b47604c2c54a7fa281 118 Pfam PF02416 mttA/Hcf106 family 3 54 6.8E-20 T 14-09-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 ccrud_RS07240 173f9db7496df2b47604c2c54a7fa281 118 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 79 20.312 T 14-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 ccrud_RS07240 173f9db7496df2b47604c2c54a7fa281 118 PANTHER PTHR33162 2 50 1.6E-12 T 14-09-2016 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 Pfam PF01189 16S rRNA methyltransferase RsmB/F 331 516 8.7E-52 T 14-09-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 PANTHER PTHR22807 98 517 1.8E-86 T 14-09-2016 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 Gene3D G3DSA:1.10.940.10 81 235 5.6E-44 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 PANTHER PTHR22807:SF30 98 517 1.8E-86 T 14-09-2016 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 SUPERFAMILY SSF48013 82 234 7.46E-32 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 449 465 9.6E-24 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 399 411 9.6E-24 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 336 346 9.6E-24 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 500 517 9.6E-24 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 302 316 9.6E-24 T 14-09-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 Pfam PF01029 NusB family 82 205 7.7E-26 T 14-09-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 Gene3D G3DSA:3.40.50.150 313 517 6.4E-45 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07730 9ebc4dffe38325ca8c9ee7294016b940 518 SUPERFAMILY SSF53335 221 517 3.14E-51 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS13040 6bd77740ea039267d95635338e9423cc 255 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 37 253 26.514 T 14-09-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 ccrud_RS13040 6bd77740ea039267d95635338e9423cc 255 PANTHER PTHR23417 32 254 7.4E-59 T 14-09-2016 ccrud_RS13040 6bd77740ea039267d95635338e9423cc 255 Gene3D G3DSA:3.40.50.150 76 226 1.2E-13 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS13040 6bd77740ea039267d95635338e9423cc 255 Pfam PF02390 Putative methyltransferase 79 245 7.5E-47 T 14-09-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 ccrud_RS13040 6bd77740ea039267d95635338e9423cc 255 PANTHER PTHR23417:SF14 32 254 7.4E-59 T 14-09-2016 ccrud_RS13040 6bd77740ea039267d95635338e9423cc 255 SUPERFAMILY SSF53335 62 225 3.52E-28 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS13040 6bd77740ea039267d95635338e9423cc 255 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 76 252 2.7E-39 T 14-09-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 ccrud_RS10265 075dc3f2f01e63bea5804b7fa2e3dd42 240 Gene3D G3DSA:1.10.10.10 5 78 8.9E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10265 075dc3f2f01e63bea5804b7fa2e3dd42 240 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 77 3.5E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS10265 075dc3f2f01e63bea5804b7fa2e3dd42 240 SUPERFAMILY SSF46785 11 81 9.6E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10265 075dc3f2f01e63bea5804b7fa2e3dd42 240 SUPERFAMILY SSF48008 82 218 1.54E-27 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS10265 075dc3f2f01e63bea5804b7fa2e3dd42 240 PANTHER PTHR11751 14 103 1.9E-19 T 14-09-2016 ccrud_RS10265 075dc3f2f01e63bea5804b7fa2e3dd42 240 Pfam PF07729 FCD domain 87 210 1.1E-24 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS10265 075dc3f2f01e63bea5804b7fa2e3dd42 240 SMART SM00895 87 211 2.1E-18 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS10265 075dc3f2f01e63bea5804b7fa2e3dd42 240 Gene3D G3DSA:1.20.120.530 82 218 1.4E-26 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS07805 8d4a1c5c5d61a1f0407835a5fb0c79ec 508 PANTHER PTHR11092 142 445 7.0E-98 T 14-09-2016 IPR010099 Epimerase family protein SDR39U1 ccrud_RS07805 8d4a1c5c5d61a1f0407835a5fb0c79ec 508 Gene3D G3DSA:3.40.50.720 145 379 2.1E-17 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07805 8d4a1c5c5d61a1f0407835a5fb0c79ec 508 SUPERFAMILY SSF51735 146 429 1.26E-31 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07805 8d4a1c5c5d61a1f0407835a5fb0c79ec 508 Pfam PF08338 Domain of unknown function (DUF1731) 391 438 5.9E-12 T 14-09-2016 IPR013549 Domain of unknown function DUF1731 ccrud_RS07805 8d4a1c5c5d61a1f0407835a5fb0c79ec 508 SUPERFAMILY SSF55961 3 126 4.2E-9 T 14-09-2016 ccrud_RS07805 8d4a1c5c5d61a1f0407835a5fb0c79ec 508 Pfam PF01370 NAD dependent epimerase/dehydratase family 151 264 5.8E-7 T 14-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 ccrud_RS07805 8d4a1c5c5d61a1f0407835a5fb0c79ec 508 PANTHER PTHR11092:SF0 142 445 7.0E-98 T 14-09-2016 ccrud_RS07805 8d4a1c5c5d61a1f0407835a5fb0c79ec 508 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 150 436 1.4E-94 T 14-09-2016 IPR010099 Epimerase family protein SDR39U1 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 Pfam PF01979 Amidohydrolase family 128 454 1.8E-64 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 Gene3D G3DSA:3.20.20.140 147 432 1.7E-193 T 14-09-2016 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 Gene3D G3DSA:3.20.20.140 491 568 1.7E-193 T 14-09-2016 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 PANTHER PTHR22642 33 299 5.0E-220 T 14-09-2016 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 Pfam PF00449 Urease alpha-subunit, N-terminal domain 4 122 4.4E-50 T 14-09-2016 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 PANTHER PTHR22642:SF7 33 299 5.0E-220 T 14-09-2016 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 Hamap MF_01953 Urease subunit alpha [ureC]. 3 570 54.452 T 14-09-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 430 443 6.8E-33 T 14-09-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 337 353 6.8E-33 T 14-09-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 404 419 6.8E-33 T 14-09-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 298 315 6.8E-33 T 14-09-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 PANTHER PTHR22642 323 504 5.0E-220 T 14-09-2016 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 SUPERFAMILY SSF51338 425 477 7.56E-5 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 4 570 1.1E-281 T 14-09-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 Gene3D G3DSA:2.30.40.10 71 146 4.9E-11 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 SUPERFAMILY SSF51338 4 178 2.44E-52 T 14-09-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 PANTHER PTHR22642:SF7 323 504 5.0E-220 T 14-09-2016 ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 SUPERFAMILY SSF51556 483 570 1.39E-185 T 14-09-2016 IPR032466 Metal-dependent hydrolase ccrud_RS00500 1e76bb862410ad9ec8f8cb168a489d20 570 SUPERFAMILY SSF51556 133 434 1.39E-185 T 14-09-2016 IPR032466 Metal-dependent hydrolase ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 PIRSF PIRSF002144 1 92 1.5E-30 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 Pfam PF00203 Ribosomal protein S19 3 83 6.8E-36 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 92 7.5E-46 T 14-09-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.488 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 Gene3D G3DSA:3.30.860.10 1 91 2.8E-40 T 14-09-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.5E-22 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.5E-22 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.5E-22 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 SUPERFAMILY SSF54570 3 83 2.09E-33 T 14-09-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 14-09-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 ccrud_RS02625 8cbba75f5df5f1c57c89471c6d1e303c 92 PANTHER PTHR11880 1 92 1.6E-50 T 14-09-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 Pfam PF07732 Multicopper oxidase 72 182 8.3E-31 T 14-09-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 SUPERFAMILY SSF49503 373 486 4.28E-26 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 SUPERFAMILY SSF49503 56 182 1.07E-33 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 Pfam PF07731 Multicopper oxidase 371 487 6.1E-25 T 14-09-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 Pfam PF00394 Multicopper oxidase 242 300 1.1E-6 T 14-09-2016 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 Gene3D G3DSA:2.60.40.420 188 301 7.3E-30 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 Gene3D G3DSA:2.60.40.420 375 489 1.1E-29 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 Gene3D G3DSA:2.60.40.420 55 187 9.9E-33 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 SUPERFAMILY SSF49503 188 301 4.06E-25 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 PANTHER PTHR11709:SF2 51 489 3.4E-84 T 14-09-2016 ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 ProSitePatterns PS00080 Multicopper oxidases signature 2. 469 480 - T 14-09-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 ccrud_RS04680 8e55647f89bc0395e41f60c74789d570 508 PANTHER PTHR11709 51 489 3.4E-84 T 14-09-2016 ccrud_RS11085 f5b69d9001a57b4484ea358f4aa036e4 223 SUPERFAMILY SSF52255 95 222 1.96E-26 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS11085 f5b69d9001a57b4484ea358f4aa036e4 223 Pfam PF00731 AIR carboxylase 96 222 2.5E-14 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS11085 f5b69d9001a57b4484ea358f4aa036e4 223 PANTHER PTHR23046 1 223 4.9E-81 T 14-09-2016 ccrud_RS11085 f5b69d9001a57b4484ea358f4aa036e4 223 SMART SM01001 94 223 6.1E-21 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS11085 f5b69d9001a57b4484ea358f4aa036e4 223 PANTHER PTHR23046:SF3 1 223 4.9E-81 T 14-09-2016 ccrud_RS11085 f5b69d9001a57b4484ea358f4aa036e4 223 Gene3D G3DSA:3.40.50.7700 95 222 4.3E-21 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS09800 7f7c445ae5c554588cf44826011d9761 416 SUPERFAMILY SSF103473 7 413 4.58E-46 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS09800 7f7c445ae5c554588cf44826011d9761 416 Gene3D G3DSA:1.20.1250.20 227 412 8.2E-10 T 14-09-2016 ccrud_RS09800 7f7c445ae5c554588cf44826011d9761 416 PANTHER PTHR11662 28 415 2.2E-33 T 14-09-2016 ccrud_RS09800 7f7c445ae5c554588cf44826011d9761 416 Pfam PF07690 Major Facilitator Superfamily 18 332 2.0E-28 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS09800 7f7c445ae5c554588cf44826011d9761 416 PANTHER PTHR11662:SF277 28 415 2.2E-33 T 14-09-2016 ccrud_RS09800 7f7c445ae5c554588cf44826011d9761 416 Gene3D G3DSA:1.20.1250.20 14 193 3.4E-25 T 14-09-2016 ccrud_RS03880 6ebb49cf0fc7a7ad4edc8e8f0e0a6617 288 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 108 121 - T 14-09-2016 IPR020583 Inositol monophosphatase, metal-binding site ccrud_RS03880 6ebb49cf0fc7a7ad4edc8e8f0e0a6617 288 Gene3D G3DSA:3.40.190.80 197 285 6.4E-10 T 14-09-2016 ccrud_RS03880 6ebb49cf0fc7a7ad4edc8e8f0e0a6617 288 SUPERFAMILY SSF56655 32 284 6.41E-53 T 14-09-2016 ccrud_RS03880 6ebb49cf0fc7a7ad4edc8e8f0e0a6617 288 PRINTS PR00377 Inositol monophosphatase superfamily signature 88 104 3.2E-11 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03880 6ebb49cf0fc7a7ad4edc8e8f0e0a6617 288 PRINTS PR00377 Inositol monophosphatase superfamily signature 108 124 3.2E-11 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03880 6ebb49cf0fc7a7ad4edc8e8f0e0a6617 288 PRINTS PR00377 Inositol monophosphatase superfamily signature 66 86 3.2E-11 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03880 6ebb49cf0fc7a7ad4edc8e8f0e0a6617 288 PANTHER PTHR20854 36 256 1.2E-31 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS03880 6ebb49cf0fc7a7ad4edc8e8f0e0a6617 288 Gene3D G3DSA:3.30.540.10 35 188 2.1E-33 T 14-09-2016 ccrud_RS03880 6ebb49cf0fc7a7ad4edc8e8f0e0a6617 288 Pfam PF00459 Inositol monophosphatase family 36 264 5.3E-35 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 Gene3D G3DSA:1.10.287.130 319 379 5.9E-14 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 SMART SM00387 428 543 1.8E-19 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 Pfam PF17203 Single cache domain 3 41 182 2.2E-20 T 14-09-2016 IPR033463 Single cache domain 3 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 Gene3D G3DSA:3.30.565.10 405 543 2.1E-24 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 Gene3D G3DSA:3.30.450.20 36 182 7.1E-37 T 14-09-2016 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 429 540 4.2E-16 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 331 379 3.9E-7 T 14-09-2016 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 PANTHER PTHR24423:SF375 87 173 2.3E-45 T 14-09-2016 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 SUPERFAMILY SSF55890 335 443 2.09E-7 T 14-09-2016 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 PANTHER PTHR24423:SF375 206 481 2.3E-45 T 14-09-2016 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 SUPERFAMILY SSF103190 41 182 1.88E-25 T 14-09-2016 IPR029151 Periplasmic sensor domain-like ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 PANTHER PTHR24423 206 481 2.3E-45 T 14-09-2016 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 PRINTS PR00344 Bacterial sensor protein C-terminal signature 502 520 1.7E-9 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 482 1.7E-9 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 PRINTS PR00344 Bacterial sensor protein C-terminal signature 527 540 1.7E-9 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 PANTHER PTHR24423 87 173 2.3E-45 T 14-09-2016 ccrud_RS00345 e05a955f175a68f2b966c33671cbe989 544 SUPERFAMILY SSF55874 408 540 1.01E-24 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS13080 f254b490f746f0a8917c928c4c572592 307 PANTHER PTHR33630 53 219 3.3E-38 T 14-09-2016 ccrud_RS13080 f254b490f746f0a8917c928c4c572592 307 Gene3D G3DSA:3.40.50.1820 236 305 1.8E-48 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13080 f254b490f746f0a8917c928c4c572592 307 Gene3D G3DSA:3.40.50.1820 43 198 1.8E-48 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13080 f254b490f746f0a8917c928c4c572592 307 PANTHER PTHR33630 240 306 3.3E-38 T 14-09-2016 ccrud_RS13080 f254b490f746f0a8917c928c4c572592 307 Pfam PF01083 Cutinase 88 259 2.4E-16 T 14-09-2016 IPR000675 Cutinase/acetylxylan esterase GO:0008152|GO:0016787 ccrud_RS13080 f254b490f746f0a8917c928c4c572592 307 SMART SM01110 51 300 2.3E-62 T 14-09-2016 IPR000675 Cutinase/acetylxylan esterase GO:0008152|GO:0016787 ccrud_RS13080 f254b490f746f0a8917c928c4c572592 307 PANTHER PTHR33630:SF3 240 306 3.3E-38 T 14-09-2016 ccrud_RS13080 f254b490f746f0a8917c928c4c572592 307 SUPERFAMILY SSF53474 53 260 1.61E-28 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13080 f254b490f746f0a8917c928c4c572592 307 PANTHER PTHR33630:SF3 53 219 3.3E-38 T 14-09-2016 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 SUPERFAMILY SSF52402 11 212 2.87E-59 T 14-09-2016 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 PANTHER PTHR23293:SF6 246 304 2.6E-65 T 14-09-2016 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 PANTHER PTHR23293:SF6 180 213 2.6E-65 T 14-09-2016 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 PANTHER PTHR23293:SF6 12 160 2.6E-65 T 14-09-2016 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 36 258 2.8E-42 T 14-09-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 Gene3D G3DSA:3.40.50.620 9 212 1.7E-49 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 Gene3D G3DSA:3.40.50.620 245 253 1.7E-49 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 PANTHER PTHR23293 246 304 2.6E-65 T 14-09-2016 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 PANTHER PTHR23293 180 213 2.6E-65 T 14-09-2016 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 PANTHER PTHR23293 12 160 2.6E-65 T 14-09-2016 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 PIRSF PIRSF002936 4 304 9.8E-132 T 14-09-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 ccrud_RS12655 1207785ce924f0136523e9262613b03d 304 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 13 304 6.1E-124 T 14-09-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 Pfam PF00989 PAS fold 125 210 4.6E-6 T 14-09-2016 IPR013767 PAS fold GO:0006355 ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 SMART SM00387 369 479 3.0E-15 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 SUPERFAMILY SSF47384 246 321 4.9E-5 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 SUPERFAMILY SSF55785 2 104 2.39E-8 T 14-09-2016 IPR000014 PAS domain ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 PANTHER PTHR24423 1 479 7.1E-55 T 14-09-2016 ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 SMART SM00091 1 63 15.0 T 14-09-2016 IPR000014 PAS domain ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 SMART SM00091 123 189 8.1E-4 T 14-09-2016 IPR000014 PAS domain ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 SUPERFAMILY SSF55874 313 478 4.98E-30 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 439 457 8.3E-8 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 463 476 8.3E-8 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 424 8.3E-8 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 Gene3D G3DSA:3.30.450.20 2 102 3.2E-7 T 14-09-2016 ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 Gene3D G3DSA:3.30.450.20 128 234 3.5E-12 T 14-09-2016 ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 SUPERFAMILY SSF55785 135 241 8.9E-14 T 14-09-2016 IPR000014 PAS domain ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 373 478 1.8E-14 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 Gene3D G3DSA:3.30.565.10 330 478 1.7E-27 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 Pfam PF13188 PAS domain 2 40 1.7E-4 T 14-09-2016 IPR000014 PAS domain ccrud_RS12920 83cf5d1ef8d306138d12e25beac60a55 482 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 125 241 5.6E-10 T 14-09-2016 IPR000014 PAS domain ccrud_RS12645 4cba9229af9bb2b72fdace6d349e3532 241 Pfam PF01903 CbiX 9 111 4.7E-20 T 14-09-2016 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX GO:0009236|GO:0016852 KEGG: 00860+4.99.1.3|MetaCyc: PWY-7377|UniPathway: UPA00148 ccrud_RS12645 4cba9229af9bb2b72fdace6d349e3532 241 SUPERFAMILY SSF53800 1 214 3.82E-33 T 14-09-2016 ccrud_RS12645 4cba9229af9bb2b72fdace6d349e3532 241 PANTHER PTHR33542 1 239 1.7E-20 T 14-09-2016 ccrud_RS12645 4cba9229af9bb2b72fdace6d349e3532 241 Gene3D G3DSA:3.40.50.1400 2 115 5.6E-19 T 14-09-2016 ccrud_RS12645 4cba9229af9bb2b72fdace6d349e3532 241 Gene3D G3DSA:3.40.50.1400 123 234 7.8E-7 T 14-09-2016 ccrud_RS02790 92618f8915e9773ec635a840d44daf22 245 SUPERFAMILY SSF109604 56 187 1.06E-21 T 14-09-2016 ccrud_RS02790 92618f8915e9773ec635a840d44daf22 245 Gene3D G3DSA:1.10.3210.10 66 194 1.0E-15 T 14-09-2016 IPR006674 HD domain ccrud_RS02790 92618f8915e9773ec635a840d44daf22 245 Pfam PF01966 HD domain 75 185 3.1E-8 T 14-09-2016 IPR006674 HD domain ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 248 1.8E-49 T 14-09-2016 ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 PANTHER PTHR24322 157 188 9.8E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 PANTHER PTHR24322 11 141 9.8E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 Gene3D G3DSA:3.40.50.720 2 249 5.3E-65 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 SUPERFAMILY SSF51735 7 249 8.12E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 4.7E-25 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 4.7E-25 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 4.7E-25 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 4.7E-25 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS03540 f15cf75ed91311eb3e6e54fede1d4cb2 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 4.7E-25 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 8 168 5.4E-68 T 14-09-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 129 157 - T 14-09-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 Gene3D G3DSA:2.160.10.10 65 178 9.0E-35 T 14-09-2016 ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 121 155 1.2E-7 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 75 111 0.0026 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 PANTHER PTHR23416 1 168 2.1E-83 T 14-09-2016 ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 PANTHER PTHR23416:SF55 1 168 2.1E-83 T 14-09-2016 ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 SUPERFAMILY SSF51161 6 168 1.25E-53 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 PIRSF PIRSF000441 1 185 7.9E-76 T 14-09-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 ccrud_RS11525 95bf6974164c4f68ca2a0709d7361ecd 188 Gene3D G3DSA:1.10.3130.10 5 64 9.0E-21 T 14-09-2016 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 Pfam PF00633 Helix-hairpin-helix motif 125 151 2.2E-9 T 14-09-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 SMART SM00525 211 231 0.0092 T 14-09-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 SMART SM00478 63 210 3.5E-59 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 Hamap MF_00942 Endonuclease III [nth]. 16 234 36.373 T 14-09-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 59 193 5.4E-22 T 14-09-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 Gene3D G3DSA:1.10.340.30 47 147 2.9E-34 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 PANTHER PTHR10359:SF18 33 230 1.2E-73 T 14-09-2016 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 Gene3D G3DSA:1.10.1670.10 148 231 1.1E-29 T 14-09-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 ProSitePatterns PS01155 Endonuclease III family signature. 127 156 - T 14-09-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 TIGRFAM TIGR01083 nth: endonuclease III 29 219 4.7E-77 T 14-09-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 PANTHER PTHR10359 33 230 1.2E-73 T 14-09-2016 ccrud_RS01510 ff3529b4ec2abb6c18e03bd9bb51a76d 260 SUPERFAMILY SSF48150 29 231 3.45E-63 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 ccrud_RS03940 d8c62a6925fe9727777650d5e198d914 289 SMART SM00943 50 199 1.4E-42 T 14-09-2016 IPR015330 DNA primase/polymerase, bifunctional, N-terminal ccrud_RS03940 d8c62a6925fe9727777650d5e198d914 289 SMART SM00942 227 287 1.2E-9 T 14-09-2016 IPR014820 Primase, C-terminal 1 ccrud_RS03940 d8c62a6925fe9727777650d5e198d914 289 SUPERFAMILY SSF56747 48 206 5.3E-24 T 14-09-2016 ccrud_RS03940 d8c62a6925fe9727777650d5e198d914 289 Pfam PF09250 Bifunctional DNA primase/polymerase, N-terminal 50 198 2.1E-30 T 14-09-2016 IPR015330 DNA primase/polymerase, bifunctional, N-terminal ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 PANTHER PTHR10174 67 344 8.0E-55 T 14-09-2016 ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 140 329 8.3E-55 T 14-09-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 Gene3D G3DSA:3.40.50.720 2 143 1.5E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 4 344 5.8E-130 T 14-09-2016 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 SUPERFAMILY SSF51735 1 157 6.31E-47 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 244 258 - T 14-09-2016 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 343 35.336 T 14-09-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 SMART SM00859 3 121 6.5E-37 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 SUPERFAMILY SSF55347 130 330 1.82E-57 T 14-09-2016 ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 Gene3D G3DSA:3.30.360.10 144 325 7.8E-66 T 14-09-2016 ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 PIRSF PIRSF000148 1 344 1.8E-107 T 14-09-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS01350 7db8862c2d87ff667336eacd847bc21f 344 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 117 8.4E-31 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 PANTHER PTHR18901 1 186 7.5E-48 T 14-09-2016 ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 1.7E-5 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 148 168 1.7E-5 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 130 146 1.7E-5 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 100 113 1.7E-5 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 77 185 2.5E-15 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 Gene3D G3DSA:3.40.50.1000 91 188 1.7E-36 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 Gene3D G3DSA:3.40.50.1000 1 16 1.7E-36 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 SUPERFAMILY SSF56784 1 189 1.29E-48 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS07315 34329e2a3a8f4c4ddf15304add8098ff 231 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 185 1.6E-23 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 Pfam PF13411 MerR HTH family regulatory protein 2 67 6.2E-15 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 Pfam PF13646 HEAT repeats 184 249 2.1E-7 T 14-09-2016 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 Gene3D G3DSA:1.10.1660.10 1 104 5.6E-26 T 14-09-2016 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 SUPERFAMILY SSF46955 1 104 9.89E-24 T 14-09-2016 IPR009061 Putative DNA-binding domain ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 SUPERFAMILY SSF48371 118 326 4.53E-10 T 14-09-2016 IPR016024 Armadillo-type fold GO:0005488 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 PANTHER PTHR30204:SF1 1 103 1.5E-16 T 14-09-2016 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.1E-7 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.1E-7 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 1.1E-7 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 SMART SM00422 1 69 1.4E-21 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 Gene3D G3DSA:1.25.10.10 105 329 3.0E-10 T 14-09-2016 IPR011989 Armadillo-like helical ccrud_RS09400 0c4a08da3322fccceaa1bcf0450f1cba 335 PANTHER PTHR30204 1 103 1.5E-16 T 14-09-2016 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 SUPERFAMILY SSF56059 3 218 3.14E-64 T 14-09-2016 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 Pfam PF00549 CoA-ligase 257 368 1.2E-10 T 14-09-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 Pfam PF08442 ATP-grasp domain 2 194 8.5E-67 T 14-09-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 SUPERFAMILY SSF52210 234 386 1.16E-38 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 Gene3D G3DSA:3.40.50.261 235 386 2.9E-49 T 14-09-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 Gene3D G3DSA:3.30.470.20 88 220 7.3E-51 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 Gene3D G3DSA:3.30.1490.20 21 87 4.0E-16 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 2 386 4.3E-121 T 14-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 PANTHER PTHR11815:SF1 2 390 4.0E-156 T 14-09-2016 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 387 38.646 T 14-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 PIRSF PIRSF001554 1 389 3.4E-134 T 14-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 250 274 - T 14-09-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS11550 64cf95a6a96e4301b2a05cb8204a444e 398 PANTHER PTHR11815 2 390 4.0E-156 T 14-09-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 ccrud_RS00710 11cd818729f41063bb0264e57b5d5032 136 PIRSF PIRSF006246 1 127 3.8E-50 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 ccrud_RS00710 11cd818729f41063bb0264e57b5d5032 136 Pfam PF02261 Aspartate decarboxylase 1 114 2.4E-49 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 ccrud_RS00710 11cd818729f41063bb0264e57b5d5032 136 PANTHER PTHR21012 2 133 2.8E-60 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 ccrud_RS00710 11cd818729f41063bb0264e57b5d5032 136 Gene3D G3DSA:2.40.40.20 1 118 8.5E-53 T 14-09-2016 ccrud_RS00710 11cd818729f41063bb0264e57b5d5032 136 ProDom PD009294 ASPARTATE 1-DECARBOXYLASE DECARBOXYLASE CHAIN LYASE ALPHA ALPHA- CONTAINS: PRECURSOR BETA 5 95 1.0E-44 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 ccrud_RS00710 11cd818729f41063bb0264e57b5d5032 136 PANTHER PTHR21012:SF0 2 133 2.8E-60 T 14-09-2016 ccrud_RS00710 11cd818729f41063bb0264e57b5d5032 136 Hamap MF_00446 Aspartate 1-decarboxylase [panD]. 1 131 67.531 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 ccrud_RS00710 11cd818729f41063bb0264e57b5d5032 136 TIGRFAM TIGR00223 panD: aspartate 1-decarboxylase 1 118 7.9E-48 T 14-09-2016 IPR003190 Aspartate decarboxylase GO:0004068|GO:0006523 KEGG: 00410+4.1.1.11|KEGG: 00770+4.1.1.11|MetaCyc: PWY-5155|UniPathway: UPA00028 ccrud_RS00710 11cd818729f41063bb0264e57b5d5032 136 SUPERFAMILY SSF50692 1 115 1.74E-46 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 Pfam PF12796 Ankyrin repeats (3 copies) 54 148 7.2E-13 T 14-09-2016 IPR020683 Ankyrin repeat-containing domain ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 Gene3D G3DSA:1.25.40.20 40 95 1.7E-14 T 14-09-2016 IPR020683 Ankyrin repeat-containing domain ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 Gene3D G3DSA:1.25.40.20 96 154 9.1E-16 T 14-09-2016 IPR020683 Ankyrin repeat-containing domain ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 PRINTS PR01415 Ankyrin repeat signature 83 98 4.2E-5 T 14-09-2016 IPR002110 Ankyrin repeat GO:0005515 ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 PRINTS PR01415 Ankyrin repeat signature 133 147 4.2E-5 T 14-09-2016 IPR002110 Ankyrin repeat GO:0005515 ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 SMART SM00248 49 78 21.0 T 14-09-2016 IPR002110 Ankyrin repeat GO:0005515 ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 SMART SM00248 115 146 1.5 T 14-09-2016 IPR002110 Ankyrin repeat GO:0005515 ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 SMART SM00248 82 111 2.2E-4 T 14-09-2016 IPR002110 Ankyrin repeat GO:0005515 ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 PANTHER PTHR24123 41 154 7.3E-24 T 14-09-2016 ccrud_RS08965 626345cd8039a53ac8bf26a1aea9ce9f 158 SUPERFAMILY SSF48403 40 157 1.19E-28 T 14-09-2016 IPR020683 Ankyrin repeat-containing domain ccrud_RS08690 ece1f27a356d5af6acaecafaf1fcd753 250 PANTHER PTHR21091 14 245 7.3E-59 T 14-09-2016 ccrud_RS08690 ece1f27a356d5af6acaecafaf1fcd753 250 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 14 227 1.8E-47 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 ccrud_RS08690 ece1f27a356d5af6acaecafaf1fcd753 250 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 94 127 - T 14-09-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 ccrud_RS08690 ece1f27a356d5af6acaecafaf1fcd753 250 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 14 248 5.7E-77 T 14-09-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 ccrud_RS08690 ece1f27a356d5af6acaecafaf1fcd753 250 PANTHER PTHR21091:SF16 14 245 7.3E-59 T 14-09-2016 ccrud_RS08690 ece1f27a356d5af6acaecafaf1fcd753 250 Gene3D G3DSA:3.30.950.10 130 249 3.2E-39 T 14-09-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 ccrud_RS08690 ece1f27a356d5af6acaecafaf1fcd753 250 Gene3D G3DSA:3.40.1010.10 14 129 5.6E-34 T 14-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 ccrud_RS08690 ece1f27a356d5af6acaecafaf1fcd753 250 SUPERFAMILY SSF53790 11 249 7.72E-65 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 TIGRFAM TIGR03450 mycothiol_INO1: inositol 1-phosphate synthase 6 360 4.0E-227 T 14-09-2016 IPR017815 Myo-inositol 1-phosphate synthase, actinobacteria ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 Gene3D G3DSA:3.30.360.10 192 306 3.7E-47 T 14-09-2016 ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 SUPERFAMILY SSF55347 192 305 6.67E-37 T 14-09-2016 ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 PANTHER PTHR11510 6 360 4.7E-152 T 14-09-2016 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|UniPathway: UPA00823 ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 PIRSF PIRSF015578 1 361 1.3E-91 T 14-09-2016 IPR002587 Myo-inositol-1-phosphate synthase GO:0004512|GO:0006021|GO:0008654 KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|UniPathway: UPA00823 ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 Gene3D G3DSA:3.40.50.720 4 191 2.6E-112 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 Gene3D G3DSA:3.40.50.720 307 360 2.6E-112 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 Pfam PF01658 Myo-inositol-1-phosphate synthase 193 306 6.4E-33 T 14-09-2016 IPR013021 Myo-inositol-1-phosphate synthase, GAPDH-like KEGG: 00521+5.5.1.4|KEGG: 00562+5.5.1.4|MetaCyc: PWY-2301|MetaCyc: PWY-4661|MetaCyc: PWY-6372|MetaCyc: PWY-6580|MetaCyc: PWY-6664|UniPathway: UPA00823 ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 SUPERFAMILY SSF51735 5 187 2.63E-94 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 SUPERFAMILY SSF51735 303 360 2.63E-94 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13550 c004d4470212aa3fc6017bd0dc7a5af7 363 PANTHER PTHR11510:SF9 6 360 4.7E-152 T 14-09-2016 ccrud_RS11990 a8f77e5f7cd86eeeb81d1096892e0e37 254 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 7 244 27.567 T 14-09-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS11990 a8f77e5f7cd86eeeb81d1096892e0e37 254 PANTHER PTHR32125:SF4 8 253 3.9E-58 T 14-09-2016 ccrud_RS11990 a8f77e5f7cd86eeeb81d1096892e0e37 254 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 240 4.3E-60 T 14-09-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS11990 a8f77e5f7cd86eeeb81d1096892e0e37 254 PANTHER PTHR32125 8 253 3.9E-58 T 14-09-2016 ccrud_RS11990 a8f77e5f7cd86eeeb81d1096892e0e37 254 Gene3D G3DSA:3.90.550.10 7 243 2.5E-64 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS11990 a8f77e5f7cd86eeeb81d1096892e0e37 254 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 115 122 - T 14-09-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS11990 a8f77e5f7cd86eeeb81d1096892e0e37 254 SUPERFAMILY SSF53448 8 241 7.21E-49 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS11990 a8f77e5f7cd86eeeb81d1096892e0e37 254 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 8 240 2.2E-61 T 14-09-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS07870 e2afce49850e90bb899851830b5edbc7 101 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 53 68 2.6E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS07870 e2afce49850e90bb899851830b5edbc7 101 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 40 51 2.6E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS07870 e2afce49850e90bb899851830b5edbc7 101 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 18 33 2.6E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS07870 e2afce49850e90bb899851830b5edbc7 101 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 68 83 2.6E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS07870 e2afce49850e90bb899851830b5edbc7 101 SMART SM00418 16 97 6.6E-13 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS07870 e2afce49850e90bb899851830b5edbc7 101 Pfam PF12840 Helix-turn-helix domain 18 77 1.1E-9 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07870 e2afce49850e90bb899851830b5edbc7 101 Gene3D G3DSA:1.10.10.10 11 96 3.6E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07870 e2afce49850e90bb899851830b5edbc7 101 SUPERFAMILY SSF46785 11 95 2.99E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 SUPERFAMILY SSF50249 628 715 4.92E-24 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Pfam PF00575 S1 RNA binding domain 641 711 1.0E-19 T 14-09-2016 IPR003029 S1 domain GO:0003676 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 SUPERFAMILY SSF47781 461 549 2.78E-27 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 SUPERFAMILY SSF47781 552 623 2.2E-19 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Pfam PF16921 Tex protein YqgF-like domain 314 442 2.7E-49 T 14-09-2016 IPR032639 Tex protein, YqgF-like domain ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Gene3D G3DSA:2.40.50.140 624 711 5.4E-27 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Pfam PF09371 Tex-like protein N-terminal domain 8 189 8.3E-64 T 14-09-2016 IPR018974 Tex-like protein, N-terminal ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 SMART SM00732 313 415 1.7E-26 T 14-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 SUPERFAMILY SSF158832 2 308 1.57E-108 T 14-09-2016 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Pfam PF12836 Helix-hairpin-helix motif 482 546 4.7E-29 T 14-09-2016 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 PANTHER PTHR10724:SF1 1 745 0.0 T 14-09-2016 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 SMART SM00316 640 711 2.0E-23 T 14-09-2016 IPR022967 RNA-binding domain, S1 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Gene3D G3DSA:1.10.150.310 490 621 6.6E-46 T 14-09-2016 IPR023097 Tex RuvX-like domain ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Gene3D G3DSA:1.10.10.650 2 107 8.8E-45 T 14-09-2016 IPR023319 Tex-like protein, HTH domain ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 PANTHER PTHR10724 1 745 0.0 T 14-09-2016 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Gene3D G3DSA:1.10.3500.10 442 489 1.6E-86 T 14-09-2016 IPR023323 Tex-like domain ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Gene3D G3DSA:1.10.3500.10 109 309 1.6E-86 T 14-09-2016 IPR023323 Tex-like domain ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 Gene3D G3DSA:3.30.420.140 313 441 1.1E-48 T 14-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 ccrud_RS08900 55c0ebea4a4b36a677868f5ca4fc0966 758 SUPERFAMILY SSF53098 309 460 1.59E-45 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS05320 2e4ce23f1a0f17cbd4343b959e71ab85 105 PANTHER PTHR11938 1 92 7.1E-32 T 14-09-2016 ccrud_RS05320 2e4ce23f1a0f17cbd4343b959e71ab85 105 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ccrud_RS05320 2e4ce23f1a0f17cbd4343b959e71ab85 105 SUPERFAMILY SSF54862 3 85 1.66E-20 T 14-09-2016 ccrud_RS05320 2e4ce23f1a0f17cbd4343b959e71ab85 105 PANTHER PTHR11938:SF82 1 92 7.1E-32 T 14-09-2016 ccrud_RS05320 2e4ce23f1a0f17cbd4343b959e71ab85 105 PRINTS PR00354 7Fe ferredoxin signature 19 29 4.6E-17 T 14-09-2016 IPR000813 7Fe ferredoxin GO:0009055 ccrud_RS05320 2e4ce23f1a0f17cbd4343b959e71ab85 105 PRINTS PR00354 7Fe ferredoxin signature 35 52 4.6E-17 T 14-09-2016 IPR000813 7Fe ferredoxin GO:0009055 ccrud_RS05320 2e4ce23f1a0f17cbd4343b959e71ab85 105 PRINTS PR00354 7Fe ferredoxin signature 9 19 4.6E-17 T 14-09-2016 IPR000813 7Fe ferredoxin GO:0009055 ccrud_RS05320 2e4ce23f1a0f17cbd4343b959e71ab85 105 Gene3D G3DSA:3.30.70.20 5 69 8.5E-18 T 14-09-2016 ccrud_RS05320 2e4ce23f1a0f17cbd4343b959e71ab85 105 Pfam PF00037 4Fe-4S binding domain 34 55 1.4E-8 T 14-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ccrud_RS07685 29e7cb65b36198bcd034fbd398fca193 352 Pfam PF01933 Uncharacterised protein family UPF0052 34 300 1.6E-68 T 14-09-2016 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 ccrud_RS07685 29e7cb65b36198bcd034fbd398fca193 352 PANTHER PTHR30135 34 343 3.3E-94 T 14-09-2016 ccrud_RS07685 29e7cb65b36198bcd034fbd398fca193 352 SUPERFAMILY SSF142338 33 343 6.15E-79 T 14-09-2016 ccrud_RS07685 29e7cb65b36198bcd034fbd398fca193 352 Gene3D G3DSA:3.40.50.10680 108 346 3.2E-40 T 14-09-2016 ccrud_RS07685 29e7cb65b36198bcd034fbd398fca193 352 Hamap MF_00973 Gluconeogenesis factor. 30 348 31.953 T 14-09-2016 IPR010119 Gluconeogenesis factor ccrud_RS07685 29e7cb65b36198bcd034fbd398fca193 352 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 34 343 4.5E-89 T 14-09-2016 IPR010119 Gluconeogenesis factor ccrud_RS07685 29e7cb65b36198bcd034fbd398fca193 352 PANTHER PTHR30135:SF3 34 343 3.3E-94 T 14-09-2016 ccrud_RS10390 a0ab9d3f7c57aff69369e88a8454c779 437 PANTHER PTHR33362:SF2 9 429 4.7E-160 T 14-09-2016 ccrud_RS10390 a0ab9d3f7c57aff69369e88a8454c779 437 PANTHER PTHR33362 9 429 4.7E-160 T 14-09-2016 ccrud_RS10390 a0ab9d3f7c57aff69369e88a8454c779 437 PIRSF PIRSF006066 7 435 5.8E-149 T 14-09-2016 IPR004681 TRAP transporter permease protein GO:0016021 ccrud_RS10390 a0ab9d3f7c57aff69369e88a8454c779 437 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 424 1.6E-108 T 14-09-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ccrud_RS10390 a0ab9d3f7c57aff69369e88a8454c779 437 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 24 429 6.5E-126 T 14-09-2016 IPR004681 TRAP transporter permease protein GO:0016021 ccrud_RS08175 e252756d396c4d16c006a7e139d39b2b 136 PANTHER PTHR10173 8 133 6.3E-56 T 14-09-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 ccrud_RS08175 e252756d396c4d16c006a7e139d39b2b 136 Pfam PF01641 SelR domain 11 131 6.7E-51 T 14-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 ccrud_RS08175 e252756d396c4d16c006a7e139d39b2b 136 Gene3D G3DSA:2.170.150.20 7 133 4.2E-57 T 14-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 ccrud_RS08175 e252756d396c4d16c006a7e139d39b2b 136 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 8 130 4.5E-45 T 14-09-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 ccrud_RS08175 e252756d396c4d16c006a7e139d39b2b 136 PANTHER PTHR10173:SF18 8 133 6.3E-56 T 14-09-2016 ccrud_RS08175 e252756d396c4d16c006a7e139d39b2b 136 SUPERFAMILY SSF51316 7 133 3.61E-53 T 14-09-2016 IPR011057 Mss4-like ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 PANTHER PTHR24096:SF53 428 566 2.4E-161 T 14-09-2016 ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 PANTHER PTHR24096:SF53 1 411 2.4E-161 T 14-09-2016 ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 Gene3D G3DSA:3.40.50.980 197 348 1.1E-28 T 14-09-2016 ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 Gene3D G3DSA:3.40.50.980 49 196 5.9E-28 T 14-09-2016 ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 Gene3D G3DSA:3.30.300.30 457 561 1.7E-22 T 14-09-2016 ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 Gene3D G3DSA:2.30.38.10 363 455 1.4E-19 T 14-09-2016 ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 ProSitePatterns PS00455 Putative AMP-binding domain signature. 189 200 - T 14-09-2016 IPR020845 AMP-binding, conserved site ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 Pfam PF00501 AMP-binding enzyme 38 461 9.5E-76 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 Pfam PF13193 AMP-binding enzyme C-terminal domain 471 548 2.1E-13 T 14-09-2016 IPR025110 AMP-binding enzyme C-terminal domain ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 PANTHER PTHR24096 428 566 2.4E-161 T 14-09-2016 ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 PANTHER PTHR24096 1 411 2.4E-161 T 14-09-2016 ccrud_RS05785 5b77aec5376dc3a607402c8f7ec4cfac 574 SUPERFAMILY SSF56801 9 560 2.09E-119 T 14-09-2016 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 PANTHER PTHR11938 4 454 4.0E-139 T 14-09-2016 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 PRINTS PR00419 Adrenodoxin reductase family signature 75 85 3.7E-19 T 14-09-2016 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 PRINTS PR00419 Adrenodoxin reductase family signature 146 160 3.7E-19 T 14-09-2016 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 PRINTS PR00419 Adrenodoxin reductase family signature 6 28 3.7E-19 T 14-09-2016 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 PRINTS PR00419 Adrenodoxin reductase family signature 32 45 3.7E-19 T 14-09-2016 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 SUPERFAMILY SSF51971 261 318 7.18E-54 T 14-09-2016 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 SUPERFAMILY SSF51971 3 212 7.18E-54 T 14-09-2016 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 Gene3D G3DSA:3.40.50.720 318 448 2.2E-77 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 Gene3D G3DSA:3.40.50.720 4 96 2.2E-77 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 Gene3D G3DSA:3.50.50.60 97 317 1.0E-65 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 PIRSF PIRSF000362 1 453 3.6E-170 T 14-09-2016 IPR021163 Ferredoxin-NADP+ reductase, adrenodoxin-type GO:0016491|GO:0055114 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 186 7.4E-12 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12670 b4f48b5104e65af7f168ea5a66b5f29b 457 PANTHER PTHR11938:SF4 4 454 4.0E-139 T 14-09-2016 ccrud_RS13260 a2f42b1b3009016fbd5560724b588e74 463 Pfam PF02447 GntP family permease 13 454 9.9E-123 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 ccrud_RS13260 a2f42b1b3009016fbd5560724b588e74 463 PIRSF PIRSF002746 9 461 1.5E-142 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 ccrud_RS13260 a2f42b1b3009016fbd5560724b588e74 463 PANTHER PTHR30354:SF2 9 463 3.5E-176 T 14-09-2016 ccrud_RS13260 a2f42b1b3009016fbd5560724b588e74 463 PANTHER PTHR30354 9 463 3.5E-176 T 14-09-2016 ccrud_RS13260 a2f42b1b3009016fbd5560724b588e74 463 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 14 455 3.0E-110 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 ccrud_RS03615 2851f1aec8958153e2c512dccfccf4ab 362 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 308 340 1.3E-5 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS03615 2851f1aec8958153e2c512dccfccf4ab 362 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 273 306 9.4E-4 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS03615 2851f1aec8958153e2c512dccfccf4ab 362 SUPERFAMILY SSF53448 281 330 3.43E-72 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS03615 2851f1aec8958153e2c512dccfccf4ab 362 SUPERFAMILY SSF53448 12 244 3.43E-72 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS03615 2851f1aec8958153e2c512dccfccf4ab 362 Gene3D G3DSA:2.160.10.10 258 352 1.6E-18 T 14-09-2016 ccrud_RS03615 2851f1aec8958153e2c512dccfccf4ab 362 PANTHER PTHR22572:SF15 11 353 5.7E-106 T 14-09-2016 ccrud_RS03615 2851f1aec8958153e2c512dccfccf4ab 362 PANTHER PTHR22572 11 353 5.7E-106 T 14-09-2016 ccrud_RS03615 2851f1aec8958153e2c512dccfccf4ab 362 Pfam PF00483 Nucleotidyl transferase 12 238 2.1E-44 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 ccrud_RS03615 2851f1aec8958153e2c512dccfccf4ab 362 Gene3D G3DSA:3.90.550.10 11 241 4.7E-68 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 SUPERFAMILY SSF50249 1 66 1.89E-24 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 PIRSF PIRSF002599 1 67 1.5E-24 T 14-09-2016 IPR012156 Cold shock, CspA GO:0003676 ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 3.7E-30 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 SMART SM00357 3 67 2.8E-28 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 Gene3D G3DSA:2.40.50.140 1 65 4.9E-31 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 14-09-2016 IPR019844 Cold-shock conserved site ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 PANTHER PTHR11544 1 67 6.7E-34 T 14-09-2016 ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 PRINTS PR00050 Cold shock protein signature 25 34 7.7E-17 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 PRINTS PR00050 Cold shock protein signature 40 58 7.7E-17 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS01585 9818807ed6c3b842100cd659d7727a7f 67 PRINTS PR00050 Cold shock protein signature 4 19 7.7E-17 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 Gene3D G3DSA:3.40.50.300 20 242 1.7E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 ProSitePatterns PS00211 ABC transporters family signature. 380 394 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 220 244 1.1E-4 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 459 486 0.022 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 Gene3D G3DSA:3.40.50.300 258 485 1.9E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 PANTHER PTHR24220 13 365 7.7E-131 T 14-09-2016 ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 Pfam PF00005 ABC transporter 275 407 1.4E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 Pfam PF00005 ABC transporter 25 168 2.5E-27 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 SMART SM00382 33 226 1.8E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 SMART SM00382 284 457 4.3E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 SUPERFAMILY SSF52540 259 478 8.37E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 PANTHER PTHR24220:SF574 13 365 7.7E-131 T 14-09-2016 ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS10295 fd941380873e483c02249b74ea752a13 488 SUPERFAMILY SSF52540 22 240 3.99E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02950 8f1e2ac19a75a8f8eddd015103307b39 109 Gene3D G3DSA:1.10.287.1060 1 98 1.9E-29 T 14-09-2016 ccrud_RS02950 8f1e2ac19a75a8f8eddd015103307b39 109 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 5 93 1.5E-25 T 14-09-2016 IPR010310 Type VII secretion system ESAT-6-like ccrud_RS02950 8f1e2ac19a75a8f8eddd015103307b39 109 SUPERFAMILY SSF140453 4 97 4.05E-24 T 14-09-2016 IPR010310 Type VII secretion system ESAT-6-like ccrud_RS02950 8f1e2ac19a75a8f8eddd015103307b39 109 Pfam PF06013 Proteins of 100 residues with WXG 6 88 3.8E-22 T 14-09-2016 IPR010310 Type VII secretion system ESAT-6-like ccrud_RS05675 61a2ab0c1aee70964bae1250b0dfba24 78 SUPERFAMILY SSF55008 4 75 2.09E-19 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ccrud_RS05675 61a2ab0c1aee70964bae1250b0dfba24 78 ProSitePatterns PS01047 Heavy-metal-associated domain. 14 43 - T 14-09-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 ccrud_RS05675 61a2ab0c1aee70964bae1250b0dfba24 78 Gene3D G3DSA:3.30.70.100 4 75 2.6E-20 T 14-09-2016 ccrud_RS05675 61a2ab0c1aee70964bae1250b0dfba24 78 Pfam PF00403 Heavy-metal-associated domain 15 72 1.1E-11 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 PANTHER PTHR11751:SF292 136 159 2.7E-20 T 14-09-2016 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 PANTHER PTHR11751:SF292 22 90 2.7E-20 T 14-09-2016 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 87 3.2E-15 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 SUPERFAMILY SSF46785 17 95 2.78E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 Pfam PF07702 UTRA domain 109 244 5.2E-34 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 SUPERFAMILY SSF64288 75 249 1.73E-42 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 PANTHER PTHR11751 136 159 2.7E-20 T 14-09-2016 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 PANTHER PTHR11751 22 90 2.7E-20 T 14-09-2016 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 SMART SM00345 28 87 1.2E-14 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 61 77 5.6E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 61 5.6E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 Gene3D G3DSA:1.10.10.10 17 83 3.7E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 Gene3D G3DSA:3.40.1410.10 84 250 1.1E-44 T 14-09-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain ccrud_RS00820 bf248b86c06277368fe6f2794a12a9d4 253 SMART SM00866 107 245 2.7E-30 T 14-09-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 ccrud_RS04525 823ab87cc6b719c4edbfcd5df84e26ff 110 SUPERFAMILY SSF54909 5 91 4.92E-23 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS04525 823ab87cc6b719c4edbfcd5df84e26ff 110 PANTHER PTHR33336 5 105 8.2E-17 T 14-09-2016 ccrud_RS04525 823ab87cc6b719c4edbfcd5df84e26ff 110 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 78 4.9E-15 T 14-09-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain ccrud_RS04525 823ab87cc6b719c4edbfcd5df84e26ff 110 Gene3D G3DSA:3.30.70.900 5 91 2.3E-22 T 14-09-2016 ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 Pfam PF00196 Bacterial regulatory proteins, luxR family 834 885 8.1E-18 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 834 848 1.5E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 864 876 1.5E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 848 864 1.5E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 SUPERFAMILY SSF52540 23 184 2.81E-10 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 ProSitePatterns PS00622 LuxR-type HTH domain signature. 848 875 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 Gene3D G3DSA:1.25.40.10 543 813 3.4E-13 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 SMART SM00421 831 888 8.2E-24 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 Gene3D G3DSA:3.40.50.300 24 150 3.8E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 SUPERFAMILY SSF48452 699 817 5.46E-6 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 Gene3D G3DSA:1.10.10.10 828 890 2.5E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10725 b2767dfe050fab79252754b1e6308bf5 895 SUPERFAMILY SSF46894 831 890 3.4E-19 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 SUPERFAMILY SSF56059 94 361 1.45E-67 T 14-09-2016 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Gene3D G3DSA:3.30.1490.20 141 211 2.4E-21 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 296 303 - T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 1096 1113 - T 14-09-2016 IPR001882 Biotin-binding site ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Gene3D G3DSA:2.40.50.100 1065 1139 1.3E-19 T 14-09-2016 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Pfam PF00682 HMGL-like 534 805 2.7E-26 T 14-09-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 PANTHER PTHR18866:SF103 12 1139 0.0 T 14-09-2016 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 126 333 3.4E-71 T 14-09-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Gene3D G3DSA:3.30.470.20 215 460 1.1E-97 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 SMART SM00878 349 455 1.4E-50 T 14-09-2016 IPR005482 Biotin carboxylase, C-terminal ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 PANTHER PTHR18866 12 1139 0.0 T 14-09-2016 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Gene3D G3DSA:3.40.50.20 12 140 1.3E-43 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Pfam PF00364 Biotin-requiring enzyme 1081 1138 4.1E-16 T 14-09-2016 IPR000089 Biotin/lipoyl attachment ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 TIGRFAM TIGR01235 pyruv_carbox: pyruvate carboxylase 14 1139 0.0 T 14-09-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Gene3D G3DSA:3.10.600.10 973 1060 2.8E-25 T 14-09-2016 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Gene3D G3DSA:3.20.20.70 512 821 4.9E-125 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 SUPERFAMILY SSF52440 7 122 4.96E-40 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 SUPERFAMILY SSF51246 344 461 2.72E-36 T 14-09-2016 IPR011054 Rudiment single hybrid motif ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Pfam PF02785 Biotin carboxylase C-terminal domain 349 455 3.3E-34 T 14-09-2016 IPR005482 Biotin carboxylase, C-terminal ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Pfam PF00289 Biotin carboxylase, N-terminal domain 12 121 8.9E-38 T 14-09-2016 IPR005481 Biotin carboxylase-like, N-terminal domain ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 SUPERFAMILY SSF89000 835 1004 2.12E-41 T 14-09-2016 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 SUPERFAMILY SSF51230 1063 1139 1.05E-16 T 14-09-2016 IPR011053 Single hybrid motif ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 SUPERFAMILY SSF51569 529 838 4.21E-74 T 14-09-2016 ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 Pfam PF02436 Conserved carboxylase domain 830 1013 2.8E-52 T 14-09-2016 IPR003379 Carboxylase, conserved domain ccrud_RS03425 e6678c1962dfeadddd4d394e7a3e7cdb 1140 PIRSF PIRSF001594 7 1140 0.0 T 14-09-2016 IPR005930 Pyruvate carboxylase GO:0004736|GO:0005524|GO:0006090|GO:0006094|GO:0009374 KEGG: 00020+6.4.1.1|KEGG: 00620+6.4.1.1|KEGG: 00720+6.4.1.1|MetaCyc: PWY-5750|MetaCyc: PWY-6142|MetaCyc: PWY-6146|UniPathway: UPA00138 ccrud_RS06170 d16d7a358501d9d44be5985fc4b440e8 268 PANTHER PTHR11820 47 267 3.3E-79 T 14-09-2016 ccrud_RS06170 d16d7a358501d9d44be5985fc4b440e8 268 PANTHER PTHR11820:SF6 47 267 3.3E-79 T 14-09-2016 ccrud_RS06170 d16d7a358501d9d44be5985fc4b440e8 268 Pfam PF10370 Domain of unknown function (DUF2437) 1 57 2.7E-16 T 14-09-2016 IPR018833 Domain of unknown function DUF2437 ccrud_RS06170 d16d7a358501d9d44be5985fc4b440e8 268 SUPERFAMILY SSF56529 54 266 6.41E-62 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 ccrud_RS06170 d16d7a358501d9d44be5985fc4b440e8 268 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 62 265 6.2E-59 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 ccrud_RS06170 d16d7a358501d9d44be5985fc4b440e8 268 Gene3D G3DSA:3.90.850.10 53 266 1.0E-71 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 PANTHER PTHR11070 753 1040 5.1E-188 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 SUPERFAMILY SSF52980 902 1044 3.0E-10 T 14-09-2016 IPR011335 Restriction endonuclease type II-like ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 SUPERFAMILY SSF52540 20 195 2.42E-98 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 SUPERFAMILY SSF52540 555 709 2.42E-98 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 SUPERFAMILY SSF52540 227 509 2.42E-98 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 SUPERFAMILY SSF52540 754 780 2.42E-98 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 PANTHER PTHR11070:SF5 753 1040 5.1E-188 T 14-09-2016 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Pfam PF13361 UvrD-like helicase C-terminal domain 355 776 1.5E-27 T 14-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 PANTHER PTHR11070:SF5 19 604 5.1E-188 T 14-09-2016 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 PANTHER PTHR11070:SF5 647 708 5.1E-188 T 14-09-2016 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Gene3D G3DSA:3.40.50.300 116 178 1.6E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Gene3D G3DSA:3.40.50.300 19 83 1.6E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Gene3D G3DSA:3.40.50.300 237 339 1.6E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Pfam PF12705 PD-(D/E)XK nuclease superfamily 909 1048 3.1E-11 T 14-09-2016 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Gene3D G3DSA:3.90.320.10 980 1032 7.9E-5 T 14-09-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Pfam PF00580 UvrD/REP helicase N-terminal domain 20 338 6.6E-43 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 PANTHER PTHR11070 19 604 5.1E-188 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Gene3D G3DSA:3.40.50.300 750 789 3.2E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Gene3D G3DSA:3.40.50.300 670 705 3.2E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Gene3D G3DSA:3.40.50.300 356 473 3.2E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 PANTHER PTHR11070 647 708 5.1E-188 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Gene3D G3DSA:1.10.486.10 474 516 1.9E-16 T 14-09-2016 ccrud_RS03780 06ee79fd306b58efdf7e121f8a1e8f4c 1070 Gene3D G3DSA:1.10.486.10 550 636 1.9E-16 T 14-09-2016 ccrud_RS07395 793a70d7f7b02909bb85172f1a0e0d20 371 SUPERFAMILY SSF51395 21 367 1.25E-96 T 14-09-2016 ccrud_RS07395 793a70d7f7b02909bb85172f1a0e0d20 371 PANTHER PTHR11938:SF105 11 365 2.1E-138 T 14-09-2016 ccrud_RS07395 793a70d7f7b02909bb85172f1a0e0d20 371 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 20 367 1.6E-131 T 14-09-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07395 793a70d7f7b02909bb85172f1a0e0d20 371 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 97 116 - T 14-09-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 ccrud_RS07395 793a70d7f7b02909bb85172f1a0e0d20 371 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 303 323 - T 14-09-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 ccrud_RS07395 793a70d7f7b02909bb85172f1a0e0d20 371 Pfam PF01180 Dihydroorotate dehydrogenase 62 351 1.4E-92 T 14-09-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 ccrud_RS07395 793a70d7f7b02909bb85172f1a0e0d20 371 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 14 347 46.549 T 14-09-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07395 793a70d7f7b02909bb85172f1a0e0d20 371 PANTHER PTHR11938 11 365 2.1E-138 T 14-09-2016 ccrud_RS07395 793a70d7f7b02909bb85172f1a0e0d20 371 Gene3D G3DSA:3.20.20.70 15 367 1.2E-119 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 Pfam PF01168 Alanine racemase, N-terminal domain 8 224 8.9E-68 T 14-09-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 Pfam PF00842 Alanine racemase, C-terminal domain 235 360 1.8E-34 T 14-09-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PANTHER PTHR30511 1 361 2.0E-119 T 14-09-2016 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PANTHER PTHR30511:SF0 1 361 2.0E-119 T 14-09-2016 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 Gene3D G3DSA:3.20.20.10 10 216 3.3E-70 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 Gene3D G3DSA:2.40.37.10 217 361 7.1E-49 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 SUPERFAMILY SSF51419 8 236 6.25E-62 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PRINTS PR00992 Alanine racemase signature 251 266 7.4E-54 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PRINTS PR00992 Alanine racemase signature 26 42 7.4E-54 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PRINTS PR00992 Alanine racemase signature 62 80 7.4E-54 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PRINTS PR00992 Alanine racemase signature 154 165 7.4E-54 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PRINTS PR00992 Alanine racemase signature 343 356 7.4E-54 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PRINTS PR00992 Alanine racemase signature 268 283 7.4E-54 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PRINTS PR00992 Alanine racemase signature 289 306 7.4E-54 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PRINTS PR00992 Alanine racemase signature 197 224 7.4E-54 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 PRINTS PR00992 Alanine racemase signature 120 132 7.4E-54 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 Hamap MF_01201 Alanine racemase. 1 361 30.847 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 SMART SM01005 235 361 4.0E-56 T 14-09-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 TIGRFAM TIGR00492 alr: alanine racemase 5 361 1.7E-87 T 14-09-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS03000 e887dd7716f7568b52c6a6027b3bd79c 361 SUPERFAMILY SSF50621 228 361 2.76E-41 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 ccrud_RS10515 06dfc4a72830c3cd78c7bbc3cc36c406 101 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 100 1.9E-35 T 14-09-2016 IPR028909 Ribosomal protein L21-like GO:0005840 ccrud_RS10515 06dfc4a72830c3cd78c7bbc3cc36c406 101 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 101 21.192 T 14-09-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10515 06dfc4a72830c3cd78c7bbc3cc36c406 101 PANTHER PTHR21349 1 101 2.8E-35 T 14-09-2016 ccrud_RS10515 06dfc4a72830c3cd78c7bbc3cc36c406 101 ProSitePatterns PS01169 Ribosomal protein L21 signature. 71 93 - T 14-09-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10515 06dfc4a72830c3cd78c7bbc3cc36c406 101 SUPERFAMILY SSF141091 1 100 2.62E-32 T 14-09-2016 IPR028909 Ribosomal protein L21-like GO:0005840 ccrud_RS10515 06dfc4a72830c3cd78c7bbc3cc36c406 101 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 100 6.5E-28 T 14-09-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 Gene3D G3DSA:1.10.150.20 240 319 7.5E-31 T 14-09-2016 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 19 309 4.8E-112 T 14-09-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 Gene3D G3DSA:2.170.120.12 62 167 3.0E-45 T 14-09-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 55 149 4.4E-24 T 14-09-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 SUPERFAMILY SSF47789 243 318 4.32E-23 T 14-09-2016 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 244 301 4.2E-25 T 14-09-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 Gene3D G3DSA:3.30.1360.10 7 61 1.5E-10 T 14-09-2016 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 SUPERFAMILY SSF56553 48 168 2.88E-43 T 14-09-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 24 217 9.0E-20 T 14-09-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 249 319 6.0E-35 T 14-09-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 PANTHER PTHR32108 12 323 2.6E-129 T 14-09-2016 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 PANTHER PTHR32108:SF0 12 323 2.6E-129 T 14-09-2016 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 SMART SM00662 18 224 1.0E-93 T 14-09-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 1 310 34.286 T 14-09-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 SUPERFAMILY SSF55257 8 48 8.73E-26 T 14-09-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS02900 23b038283f8bd27b375b7247ef00f64a 338 SUPERFAMILY SSF55257 169 219 8.73E-26 T 14-09-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 59 1.2E-6 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 29 43 1.2E-6 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 Gene3D G3DSA:1.20.120.530 73 215 4.8E-27 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 SUPERFAMILY SSF46785 6 73 1.11E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 PANTHER PTHR11751 4 95 2.7E-26 T 14-09-2016 ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 SMART SM00895 79 205 5.7E-9 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 SMART SM00345 11 69 1.0E-16 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 Gene3D G3DSA:1.10.10.10 10 69 3.3E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 SUPERFAMILY SSF48008 76 213 3.92E-20 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 Pfam PF07729 FCD domain 79 201 9.3E-9 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS04945 1219eddd1bb7c67e3e28d6995bc02ee4 217 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 69 4.3E-17 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS06575 abd53194e7ce76148958bf7ed3048e95 147 Gene3D G3DSA:3.40.50.620 3 145 1.9E-34 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS06575 abd53194e7ce76148958bf7ed3048e95 147 SUPERFAMILY SSF52402 4 144 1.26E-29 T 14-09-2016 ccrud_RS06575 abd53194e7ce76148958bf7ed3048e95 147 Pfam PF00582 Universal stress protein family 5 144 2.2E-30 T 14-09-2016 IPR006016 UspA GO:0006950 ccrud_RS06575 abd53194e7ce76148958bf7ed3048e95 147 PRINTS PR01438 Universal stress protein signature 5 23 1.6E-17 T 14-09-2016 IPR006015 Universal stress protein A ccrud_RS06575 abd53194e7ce76148958bf7ed3048e95 147 PRINTS PR01438 Universal stress protein signature 122 144 1.6E-17 T 14-09-2016 IPR006015 Universal stress protein A ccrud_RS06575 abd53194e7ce76148958bf7ed3048e95 147 PRINTS PR01438 Universal stress protein signature 104 116 1.6E-17 T 14-09-2016 IPR006015 Universal stress protein A ccrud_RS06575 abd53194e7ce76148958bf7ed3048e95 147 PANTHER PTHR31964:SF42 1 144 1.6E-24 T 14-09-2016 ccrud_RS06575 abd53194e7ce76148958bf7ed3048e95 147 PANTHER PTHR31964 1 144 1.6E-24 T 14-09-2016 ccrud_RS02310 03921bf4e4a70fe7b3d9cf505d63636d 345 SUPERFAMILY SSF53850 38 255 3.82E-31 T 14-09-2016 ccrud_RS02310 03921bf4e4a70fe7b3d9cf505d63636d 345 Gene3D G3DSA:3.40.190.10 115 198 3.0E-10 T 14-09-2016 ccrud_RS02310 03921bf4e4a70fe7b3d9cf505d63636d 345 PANTHER PTHR31528 6 342 1.3E-46 T 14-09-2016 IPR027939 NMT1/THI5 family GO:0009228 UniPathway: UPA00060 ccrud_RS02310 03921bf4e4a70fe7b3d9cf505d63636d 345 Pfam PF09084 NMT1/THI5 like 42 253 1.9E-39 T 14-09-2016 IPR015168 SsuA/THI5-like ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 390 409 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 148 160 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 78 101 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 180 198 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 305 320 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 31 56 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 105 129 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 327 348 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 440 461 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 209 228 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 238 259 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 259 280 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PRINTS PR01165 Cytochrome c oxidase subunit I signature 362 380 4.6E-93 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 261 315 - T 14-09-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 SUPERFAMILY SSF81442 35 558 9.29E-169 T 14-09-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 33 536 3.1E-205 T 14-09-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 41 484 2.1E-142 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PANTHER PTHR10422:SF6 17 560 5.4E-272 T 14-09-2016 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 Gene3D G3DSA:1.20.210.10 29 564 4.5E-184 T 14-09-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS11340 4f0d953b3180335fe502688ed684e231 584 PANTHER PTHR10422 17 560 5.4E-272 T 14-09-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 ccrud_RS05430 9dbc7ba9499bb188ff617db89aab9f5d 194 Pfam PF06210 Protein of unknown function (DUF1003) 38 140 2.1E-35 T 14-09-2016 IPR010406 Protein of unknown function DUF1003 ccrud_RS05430 9dbc7ba9499bb188ff617db89aab9f5d 194 PANTHER PTHR41386:SF1 3 194 6.8E-42 T 14-09-2016 ccrud_RS05430 9dbc7ba9499bb188ff617db89aab9f5d 194 PANTHER PTHR41386 3 194 6.8E-42 T 14-09-2016 ccrud_RS01820 3d3b535f01c661d50000918f84131a5f 362 PANTHER PTHR10907:SF56 1 213 5.9E-16 T 14-09-2016 ccrud_RS01820 3d3b535f01c661d50000918f84131a5f 362 Gene3D G3DSA:3.40.50.1820 67 362 1.1E-84 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS01820 3d3b535f01c661d50000918f84131a5f 362 PANTHER PTHR10907 1 213 5.9E-16 T 14-09-2016 ccrud_RS01820 3d3b535f01c661d50000918f84131a5f 362 SUPERFAMILY SSF53474 67 251 2.86E-22 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS01820 3d3b535f01c661d50000918f84131a5f 362 SUPERFAMILY SSF53474 294 359 2.86E-22 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS01820 3d3b535f01c661d50000918f84131a5f 362 Pfam PF00756 Putative esterase 77 350 9.0E-27 T 14-09-2016 IPR000801 Putative esterase ccrud_RS01810 dc31f585b3067219453d683efd7c7c86 205 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 84 1.0E-5 T 14-09-2016 IPR025161 Putative transposase IS4/IS5 family ccrud_RS01810 dc31f585b3067219453d683efd7c7c86 205 PANTHER PTHR30007:SF0 74 203 9.7E-18 T 14-09-2016 ccrud_RS01810 dc31f585b3067219453d683efd7c7c86 205 PANTHER PTHR30007 74 203 9.7E-18 T 14-09-2016 ccrud_RS01810 dc31f585b3067219453d683efd7c7c86 205 Pfam PF01609 Transposase DDE domain 105 204 7.3E-8 T 14-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 ccrud_RS12795 d73213e42860df6fab410eebe8464750 64 SUPERFAMILY SSF47598 4 55 4.17E-9 T 14-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 ccrud_RS12795 d73213e42860df6fab410eebe8464750 64 Gene3D G3DSA:1.10.1220.10 5 47 1.4E-4 T 14-09-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 ccrud_RS00310 d892654d919024db5abe47549c4e28bd 370 Gene3D G3DSA:3.30.460.20 75 146 1.1E-15 T 14-09-2016 ccrud_RS00310 d892654d919024db5abe47549c4e28bd 370 Gene3D G3DSA:1.20.58.340 294 370 3.2E-26 T 14-09-2016 ccrud_RS00310 d892654d919024db5abe47549c4e28bd 370 PANTHER PTHR21535 80 370 5.2E-38 T 14-09-2016 ccrud_RS00310 d892654d919024db5abe47549c4e28bd 370 Gene3D G3DSA:1.20.58.340 177 292 3.0E-28 T 14-09-2016 ccrud_RS00310 d892654d919024db5abe47549c4e28bd 370 SUPERFAMILY SSF143865 75 302 1.83E-40 T 14-09-2016 ccrud_RS00310 d892654d919024db5abe47549c4e28bd 370 SUPERFAMILY SSF144083 305 367 1.57E-19 T 14-09-2016 ccrud_RS00310 d892654d919024db5abe47549c4e28bd 370 Pfam PF01544 CorA-like Mg2+ transporter protein 74 366 4.8E-51 T 14-09-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 PANTHER PTHR31964 7 148 5.6E-31 T 14-09-2016 ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 SUPERFAMILY SSF52402 154 296 3.85E-34 T 14-09-2016 ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 PRINTS PR01438 Universal stress protein signature 254 266 5.0E-21 T 14-09-2016 IPR006015 Universal stress protein A ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 PRINTS PR01438 Universal stress protein signature 272 294 5.0E-21 T 14-09-2016 IPR006015 Universal stress protein A ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 PRINTS PR01438 Universal stress protein signature 154 172 5.0E-21 T 14-09-2016 IPR006015 Universal stress protein A ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 SUPERFAMILY SSF52402 7 145 4.27E-33 T 14-09-2016 ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 Gene3D G3DSA:3.40.50.620 150 297 8.6E-39 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 Gene3D G3DSA:3.40.50.620 7 145 1.6E-34 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 Pfam PF00582 Universal stress protein family 154 294 9.9E-29 T 14-09-2016 IPR006016 UspA GO:0006950 ccrud_RS13405 e45c8050baf2c309a20c3e70bcfaabf4 298 Pfam PF00582 Universal stress protein family 6 143 1.9E-27 T 14-09-2016 IPR006016 UspA GO:0006950 ccrud_RS02330 c320ee9db273a987fb0e25dfdf9d2462 121 Gene3D G3DSA:1.10.10.10 22 112 2.8E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS02330 c320ee9db273a987fb0e25dfdf9d2462 121 SMART SM00418 32 112 3.2E-13 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS02330 c320ee9db273a987fb0e25dfdf9d2462 121 SUPERFAMILY SSF46785 27 111 1.35E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS02330 c320ee9db273a987fb0e25dfdf9d2462 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 1.5E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS02330 c320ee9db273a987fb0e25dfdf9d2462 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 84 99 1.5E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS02330 c320ee9db273a987fb0e25dfdf9d2462 121 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 34 49 1.5E-10 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS02330 c320ee9db273a987fb0e25dfdf9d2462 121 Pfam PF12840 Helix-turn-helix domain 35 89 2.5E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 Pfam PF00890 FAD binding domain 17 526 3.8E-67 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 SUPERFAMILY SSF51905 205 311 1.32E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 SUPERFAMILY SSF51905 485 543 1.32E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 SUPERFAMILY SSF51905 8 124 1.32E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 PANTHER PTHR11632 14 139 4.5E-108 T 14-09-2016 ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 PANTHER PTHR11632 192 548 4.5E-108 T 14-09-2016 ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 SUPERFAMILY SSF56425 320 486 2.72E-32 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 Gene3D G3DSA:3.90.700.10 324 478 8.9E-34 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 PANTHER PTHR11632:SF59 14 139 4.5E-108 T 14-09-2016 ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 PANTHER PTHR11632:SF59 192 548 4.5E-108 T 14-09-2016 ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 Gene3D G3DSA:3.50.50.60 482 543 2.6E-50 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 Gene3D G3DSA:3.50.50.60 11 141 2.6E-50 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11785 3a34cea27d29e799702e8d9c3b0292b8 557 Gene3D G3DSA:3.50.50.60 196 298 2.6E-50 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07200 6ab500afae00146befd51fd9de6334db 426 PIRSF PIRSF036428 36 426 8.5E-118 T 14-09-2016 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00148 ccrud_RS07200 6ab500afae00146befd51fd9de6334db 426 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 43 228 4.6E-42 T 14-09-2016 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 ccrud_RS07200 6ab500afae00146befd51fd9de6334db 426 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 41 226 2.5E-23 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 ccrud_RS07200 6ab500afae00146befd51fd9de6334db 426 SUPERFAMILY SSF53335 260 417 2.72E-5 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07200 6ab500afae00146befd51fd9de6334db 426 SUPERFAMILY SSF53790 41 242 1.83E-34 T 14-09-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 ccrud_RS07200 6ab500afae00146befd51fd9de6334db 426 Gene3D G3DSA:3.40.1010.10 40 146 8.2E-25 T 14-09-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 ccrud_RS07200 6ab500afae00146befd51fd9de6334db 426 Gene3D G3DSA:3.30.950.10 147 242 6.4E-15 T 14-09-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 ccrud_RS02145 4ac16b7f5750d2da7c3480e99f975a5d 309 Gene3D G3DSA:3.30.420.40 2 122 2.4E-31 T 14-09-2016 ccrud_RS02145 4ac16b7f5750d2da7c3480e99f975a5d 309 SUPERFAMILY SSF53067 2 125 2.46E-29 T 14-09-2016 ccrud_RS02145 4ac16b7f5750d2da7c3480e99f975a5d 309 PANTHER PTHR30005 2 306 2.8E-81 T 14-09-2016 ccrud_RS02145 4ac16b7f5750d2da7c3480e99f975a5d 309 Pfam PF02541 Ppx/GppA phosphatase family 21 304 9.8E-76 T 14-09-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 ccrud_RS02145 4ac16b7f5750d2da7c3480e99f975a5d 309 SUPERFAMILY SSF53067 129 305 1.23E-34 T 14-09-2016 ccrud_RS02145 4ac16b7f5750d2da7c3480e99f975a5d 309 Gene3D G3DSA:3.30.420.150 125 305 6.8E-48 T 14-09-2016 ccrud_RS02705 64e48d2b43cb426a38ccf7f74a5d16eb 277 PANTHER PTHR30592:SF1 22 275 1.3E-77 T 14-09-2016 ccrud_RS02705 64e48d2b43cb426a38ccf7f74a5d16eb 277 PIRSF PIRSF015626 1 276 7.6E-99 T 14-09-2016 IPR003786 Protein FdhD GO:0016783 ccrud_RS02705 64e48d2b43cb426a38ccf7f74a5d16eb 277 Gene3D G3DSA:3.40.140.10 144 275 2.6E-51 T 14-09-2016 ccrud_RS02705 64e48d2b43cb426a38ccf7f74a5d16eb 277 PANTHER PTHR30592 22 275 1.3E-77 T 14-09-2016 ccrud_RS02705 64e48d2b43cb426a38ccf7f74a5d16eb 277 Pfam PF02634 FdhD/NarQ family 30 274 1.1E-71 T 14-09-2016 IPR003786 Protein FdhD GO:0016783 ccrud_RS02705 64e48d2b43cb426a38ccf7f74a5d16eb 277 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 26 273 2.5E-45 T 14-09-2016 IPR003786 Protein FdhD GO:0016783 ccrud_RS02705 64e48d2b43cb426a38ccf7f74a5d16eb 277 SUPERFAMILY SSF53927 23 274 6.92E-72 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 ccrud_RS02705 64e48d2b43cb426a38ccf7f74a5d16eb 277 Gene3D G3DSA:3.10.20.10 32 128 1.4E-22 T 14-09-2016 ccrud_RS02705 64e48d2b43cb426a38ccf7f74a5d16eb 277 Hamap MF_00187 Protein FdhD [fdhD]. 3 277 30.477 T 14-09-2016 IPR003786 Protein FdhD GO:0016783 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 PANTHER PTHR22924:SF20 44 699 2.1E-44 T 14-09-2016 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 PRINTS PR00359 B-class P450 signature 203 225 7.1E-19 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 PRINTS PR00359 B-class P450 signature 94 105 7.1E-19 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 PRINTS PR00359 B-class P450 signature 362 373 7.1E-19 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 PRINTS PR00359 B-class P450 signature 331 346 7.1E-19 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 PRINTS PR00359 B-class P450 signature 303 330 7.1E-19 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 PRINTS PR00359 B-class P450 signature 353 362 7.1E-19 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 Gene3D G3DSA:3.10.20.30 641 738 1.0E-27 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 SUPERFAMILY SSF52343 526 649 3.01E-24 T 14-09-2016 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 663 734 2.1E-10 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 Gene3D G3DSA:2.40.30.10 422 529 5.6E-32 T 14-09-2016 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 SUPERFAMILY SSF48264 8 412 3.54E-68 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 SUPERFAMILY SSF63380 424 528 3.03E-25 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 Gene3D G3DSA:1.10.630.10 8 413 1.5E-81 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 355 364 - T 14-09-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 692 700 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 Pfam PF00175 Oxidoreductase NAD-binding domain 540 628 1.2E-6 T 14-09-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 PANTHER PTHR22924 44 699 2.1E-44 T 14-09-2016 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 Gene3D G3DSA:3.40.50.80 535 640 5.1E-22 T 14-09-2016 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 Pfam PF00067 Cytochrome P450 206 371 6.2E-24 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS01625 880476f52326df4d27ce21a36e20a72b 745 SUPERFAMILY SSF54292 634 738 3.8E-25 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 13 35 - T 14-09-2016 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 Pfam PF00186 Dihydrofolate reductase 1 151 9.1E-41 T 14-09-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 PANTHER PTHR22778 1 151 3.4E-25 T 14-09-2016 ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 SUPERFAMILY SSF53597 2 151 3.67E-44 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 PRINTS PR00070 Dihydrofolate reductase signature 27 35 3.9E-15 T 14-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 PRINTS PR00070 Dihydrofolate reductase signature 13 23 3.9E-15 T 14-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 PRINTS PR00070 Dihydrofolate reductase signature 40 51 3.9E-15 T 14-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 PRINTS PR00070 Dihydrofolate reductase signature 84 98 3.9E-15 T 14-09-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 Gene3D G3DSA:3.40.430.10 1 151 1.5E-45 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS04155 26aac76289ecd34c39f3b38961e2560a 152 PANTHER PTHR22778:SF16 1 151 3.4E-25 T 14-09-2016 ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 ProSitePatterns PS00063 Aldo/keto reductase family putative active site signature. 220 235 - T 14-09-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 31 48 - T 14-09-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 PANTHER PTHR11732 3 251 2.4E-108 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 PRINTS PR00069 Aldo-keto reductase signature 83 101 2.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 PRINTS PR00069 Aldo-keto reductase signature 149 178 2.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 PRINTS PR00069 Aldo-keto reductase signature 115 132 2.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 PRINTS PR00069 Aldo-keto reductase signature 27 51 2.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 PRINTS PR00069 Aldo-keto reductase signature 187 211 2.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 115 132 - T 14-09-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 Gene3D G3DSA:3.20.20.100 3 261 6.1E-85 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 Pfam PF00248 Aldo/keto reductase family 7 251 7.0E-41 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS02695 f381b89eca6b116dbe022cb2d5b32438 269 SUPERFAMILY SSF51430 3 254 1.2E-78 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS05985 f10ac6ae42edfa72adef4f352a542f3c 277 PANTHER PTHR30007 74 262 3.7E-25 T 14-09-2016 ccrud_RS05985 f10ac6ae42edfa72adef4f352a542f3c 277 PANTHER PTHR30007:SF0 74 262 3.7E-25 T 14-09-2016 ccrud_RS05985 f10ac6ae42edfa72adef4f352a542f3c 277 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 84 1.9E-5 T 14-09-2016 IPR025161 Putative transposase IS4/IS5 family ccrud_RS05985 f10ac6ae42edfa72adef4f352a542f3c 277 Pfam PF01609 Transposase DDE domain 105 207 4.9E-10 T 14-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 ccrud_RS01330 f10ac6ae42edfa72adef4f352a542f3c 277 PANTHER PTHR30007 74 262 3.7E-25 T 14-09-2016 ccrud_RS01330 f10ac6ae42edfa72adef4f352a542f3c 277 PANTHER PTHR30007:SF0 74 262 3.7E-25 T 14-09-2016 ccrud_RS01330 f10ac6ae42edfa72adef4f352a542f3c 277 Pfam PF13340 Putative transposase of IS4/5 family (DUF4096) 10 84 1.9E-5 T 14-09-2016 IPR025161 Putative transposase IS4/IS5 family ccrud_RS01330 f10ac6ae42edfa72adef4f352a542f3c 277 Pfam PF01609 Transposase DDE domain 105 207 4.9E-10 T 14-09-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 PANTHER PTHR10668 16 473 1.7E-121 T 14-09-2016 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 PANTHER PTHR10668:SF74 16 473 1.7E-121 T 14-09-2016 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 SUPERFAMILY SSF51905 12 314 6.98E-29 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 SUPERFAMILY SSF51905 436 472 6.98E-29 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 PRINTS PR00419 Adrenodoxin reductase family signature 15 37 2.0E-5 T 14-09-2016 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 PRINTS PR00419 Adrenodoxin reductase family signature 38 51 2.0E-5 T 14-09-2016 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 Gene3D G3DSA:3.50.50.60 219 342 1.0E-21 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 Gene3D G3DSA:3.50.50.60 119 162 1.0E-21 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 Gene3D G3DSA:3.50.50.60 12 68 1.0E-21 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02515 8d08ba4dea655e20e8e24188c9461c55 474 Pfam PF13450 NAD(P)-binding Rossmann-like domain 18 70 4.5E-11 T 14-09-2016 ccrud_RS04565 57e7f61e0c5427f30317bdc1946f5453 193 SUPERFAMILY SSF46689 5 78 3.5E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS04565 57e7f61e0c5427f30317bdc1946f5453 193 PANTHER PTHR30055 1 111 3.3E-18 T 14-09-2016 ccrud_RS04565 57e7f61e0c5427f30317bdc1946f5453 193 PANTHER PTHR30055:SF10 1 111 3.3E-18 T 14-09-2016 ccrud_RS04565 57e7f61e0c5427f30317bdc1946f5453 193 Gene3D G3DSA:1.10.357.10 5 110 7.0E-20 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS04565 57e7f61e0c5427f30317bdc1946f5453 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 57 5.7E-9 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 Gene3D G3DSA:3.90.660.20 227 384 1.8E-21 T 14-09-2016 IPR027418 Protoporphyrinogen oxidase, C-terminal domain KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|UniPathway: UPA00251 ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 Gene3D G3DSA:1.10.3110.10 109 179 1.8E-9 T 14-09-2016 ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 Pfam PF01593 Flavin containing amine oxidoreductase 10 380 4.3E-32 T 14-09-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 Gene3D G3DSA:3.40.50.720 2 43 1.0E-9 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 SUPERFAMILY SSF54373 293 401 1.49E-19 T 14-09-2016 ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 PANTHER PTHR10742 1 451 3.2E-43 T 14-09-2016 ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 SUPERFAMILY SSF51905 1 310 1.7E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 SUPERFAMILY SSF51905 419 451 1.7E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 PANTHER PTHR10742:SF294 1 451 3.2E-43 T 14-09-2016 ccrud_RS02270 9f1d9837e8f07ca56886067795ea73cf 452 TIGRFAM TIGR00562 proto_IX_ox: protoporphyrinogen oxidase 3 450 2.2E-42 T 14-09-2016 IPR004572 Protoporphyrinogen oxidase GO:0004729|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.4|MetaCyc: PWY-7159|UniPathway: UPA00251 ccrud_RS08545 4236bb411fb9733a3342b6c1dab6b1e1 219 Gene3D G3DSA:1.10.10.10 10 65 4.1E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08545 4236bb411fb9733a3342b6c1dab6b1e1 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 65 4.6E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS08545 4236bb411fb9733a3342b6c1dab6b1e1 219 PANTHER PTHR11751 10 95 1.7E-15 T 14-09-2016 ccrud_RS08545 4236bb411fb9733a3342b6c1dab6b1e1 219 SMART SM00345 12 69 6.5E-4 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS08545 4236bb411fb9733a3342b6c1dab6b1e1 219 SUPERFAMILY SSF46785 10 73 5.55E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08545 4236bb411fb9733a3342b6c1dab6b1e1 219 Pfam PF07729 FCD domain 79 200 2.0E-24 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS08545 4236bb411fb9733a3342b6c1dab6b1e1 219 SUPERFAMILY SSF48008 74 209 1.96E-25 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS08545 4236bb411fb9733a3342b6c1dab6b1e1 219 Gene3D G3DSA:1.20.120.530 74 214 3.3E-29 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS08545 4236bb411fb9733a3342b6c1dab6b1e1 219 SMART SM00895 79 202 5.8E-16 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS00675 14398d9bb7f3c866d5ba1864b06d1d97 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 92 125 5.2E-5 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS00675 14398d9bb7f3c866d5ba1864b06d1d97 186 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 16 49 3.7E-6 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS00675 14398d9bb7f3c866d5ba1864b06d1d97 186 SUPERFAMILY SSF51161 9 167 5.68E-46 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS00675 14398d9bb7f3c866d5ba1864b06d1d97 186 PANTHER PTHR13061 1 165 1.3E-59 T 14-09-2016 ccrud_RS00675 14398d9bb7f3c866d5ba1864b06d1d97 186 Gene3D G3DSA:2.160.10.10 10 168 1.5E-44 T 14-09-2016 ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 SUPERFAMILY SSF48019 271 455 9.07E-75 T 14-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 Gene3D G3DSA:1.20.272.10 267 365 5.2E-46 T 14-09-2016 ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 Gene3D G3DSA:3.40.50.300 38 186 9.7E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 PANTHER PTHR13779 37 453 2.8E-172 T 14-09-2016 ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 SUPERFAMILY SSF52540 39 251 2.03E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 77 178 2.6E-14 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 Pfam PF12002 MgsA AAA+ ATPase C terminal 286 451 2.6E-71 T 14-09-2016 IPR021886 MgsA AAA+ ATPase C-terminal ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 Gene3D G3DSA:1.10.3710.10 366 456 3.0E-28 T 14-09-2016 ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 Gene3D G3DSA:1.10.8.60 189 255 7.2E-10 T 14-09-2016 ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 Pfam PF16193 AAA C-terminal domain 211 285 2.1E-22 T 14-09-2016 IPR032423 AAA ATPase, C-terminal domain ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 SMART SM00382 73 188 4.5E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS07910 174166fd9b4c1f68756683f09ed22667 459 PANTHER PTHR13779:SF7 37 453 2.8E-172 T 14-09-2016 ccrud_RS06005 f5b2f4ca307e3b52a235b56d07bf30c0 287 PANTHER PTHR30157 3 270 4.1E-66 T 14-09-2016 ccrud_RS06005 f5b2f4ca307e3b52a235b56d07bf30c0 287 Gene3D G3DSA:3.40.50.80 137 281 8.4E-39 T 14-09-2016 ccrud_RS06005 f5b2f4ca307e3b52a235b56d07bf30c0 287 Gene3D G3DSA:2.40.30.10 13 135 1.8E-27 T 14-09-2016 ccrud_RS06005 f5b2f4ca307e3b52a235b56d07bf30c0 287 SUPERFAMILY SSF63380 14 138 4.68E-11 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS06005 f5b2f4ca307e3b52a235b56d07bf30c0 287 PANTHER PTHR30157:SF1 3 270 4.1E-66 T 14-09-2016 ccrud_RS06005 f5b2f4ca307e3b52a235b56d07bf30c0 287 Pfam PF04954 Siderophore-interacting protein 144 260 2.2E-29 T 14-09-2016 IPR007037 Siderophore-interacting protein ccrud_RS06005 f5b2f4ca307e3b52a235b56d07bf30c0 287 Pfam PF08021 Siderophore-interacting FAD-binding domain 23 136 2.1E-32 T 14-09-2016 IPR013113 FAD-binding 9, siderophore-interacting ccrud_RS10430 98916aaf29a138aa4913178364384fd8 331 Gene3D G3DSA:3.40.50.300 17 131 2.1E-4 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10430 98916aaf29a138aa4913178364384fd8 331 SUPERFAMILY SSF48019 208 326 1.65E-11 T 14-09-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 ccrud_RS10430 98916aaf29a138aa4913178364384fd8 331 SUPERFAMILY SSF52540 13 200 3.01E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10430 98916aaf29a138aa4913178364384fd8 331 PANTHER PTHR34388 17 330 4.4E-45 T 14-09-2016 ccrud_RS10430 98916aaf29a138aa4913178364384fd8 331 Pfam PF06144 DNA polymerase III, delta subunit 19 184 1.1E-13 T 14-09-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 ccrud_RS10430 98916aaf29a138aa4913178364384fd8 331 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 17 324 4.4E-32 T 14-09-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 ccrud_RS10430 98916aaf29a138aa4913178364384fd8 331 Gene3D G3DSA:1.10.8.60 141 225 1.7E-9 T 14-09-2016 ccrud_RS01425 0af749f0809e9b884a35f8612410fe2c 193 Pfam PF09335 SNARE associated Golgi protein 23 149 1.6E-18 T 14-09-2016 IPR032816 SNARE associated Golgi protein ccrud_RS01425 0af749f0809e9b884a35f8612410fe2c 193 PANTHER PTHR30353 1 191 9.5E-21 T 14-09-2016 IPR032818 DedA family ccrud_RS05290 e772db56206a15d703f96d60bd4eacfd 179 Pfam PF04167 Protein of unknown function (DUF402) 52 119 3.1E-17 T 14-09-2016 IPR007295 Domain of unknown function DUF402 ccrud_RS05290 e772db56206a15d703f96d60bd4eacfd 179 SUPERFAMILY SSF159234 4 167 3.14E-50 T 14-09-2016 ccrud_RS05290 e772db56206a15d703f96d60bd4eacfd 179 PIRSF PIRSF012622 1 179 2.9E-108 T 14-09-2016 IPR014465 Uncharacterised conserved protein UCP012622 ccrud_RS05290 e772db56206a15d703f96d60bd4eacfd 179 Gene3D G3DSA:2.40.380.10 1 164 1.0E-72 T 14-09-2016 IPR007295 Domain of unknown function DUF402 ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 SUPERFAMILY SSF53850 89 294 6.1E-33 T 14-09-2016 ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.7E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.7E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.7E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 PANTHER PTHR30346 2 309 6.0E-74 T 14-09-2016 ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 Pfam PF03466 LysR substrate binding domain 88 280 1.5E-34 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 Gene3D G3DSA:1.10.10.10 2 88 3.0E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 Gene3D G3DSA:3.40.190.10 174 256 9.7E-20 T 14-09-2016 ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 Gene3D G3DSA:3.40.190.10 89 173 8.5E-17 T 14-09-2016 ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 SUPERFAMILY SSF46785 2 112 3.5E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00090 36078ed8130b1ad72eeccbce323f5b38 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.6E-23 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 PANTHER PTHR11606:SF4 1 447 2.6E-247 T 14-09-2016 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 SUPERFAMILY SSF51735 203 446 1.2E-78 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 371 382 9.2E-31 T 14-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 236 256 9.2E-31 T 14-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 194 216 9.2E-31 T 14-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 114 128 9.2E-31 T 14-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 PANTHER PTHR11606 1 447 2.6E-247 T 14-09-2016 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 PIRSF PIRSF000185 22 447 6.2E-122 T 14-09-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 Gene3D G3DSA:1.10.285.10 8 67 5.6E-25 T 14-09-2016 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 Gene3D G3DSA:1.10.285.10 372 446 2.0E-26 T 14-09-2016 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 57 184 1.3E-49 T 14-09-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 203 445 1.5E-90 T 14-09-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 SMART SM00839 205 445 8.3E-91 T 14-09-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 Gene3D G3DSA:3.40.50.720 210 371 2.6E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 122 135 - T 14-09-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 SUPERFAMILY SSF53223 7 197 1.95E-74 T 14-09-2016 ccrud_RS09100 c1cdb0790afb5d840a7462ba3b5efe38 447 Gene3D G3DSA:3.40.192.10 68 189 3.5E-62 T 14-09-2016 ccrud_RS10405 549714d74535786607d0ebe965352191 615 SUPERFAMILY SSF54980 416 511 5.28E-23 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS10405 549714d74535786607d0ebe965352191 615 SUPERFAMILY SSF52540 7 223 1.84E-53 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10405 549714d74535786607d0ebe965352191 615 Pfam PF00009 Elongation factor Tu GTP binding domain 15 197 1.0E-49 T 14-09-2016 ccrud_RS10405 549714d74535786607d0ebe965352191 615 SUPERFAMILY SSF54980 309 388 2.05E-18 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS10405 549714d74535786607d0ebe965352191 615 PANTHER PTHR23115 1 613 6.3E-258 T 14-09-2016 ccrud_RS10405 549714d74535786607d0ebe965352191 615 Pfam PF06421 GTP-binding protein LepA C-terminus 506 610 7.1E-49 T 14-09-2016 IPR013842 GTP-binding protein LepA, C-terminal ccrud_RS10405 549714d74535786607d0ebe965352191 615 TIGRFAM TIGR01393 lepA: elongation factor 4 15 613 1.4E-284 T 14-09-2016 IPR006297 Elongation factor 4 GO:0005525 ccrud_RS10405 549714d74535786607d0ebe965352191 615 Hamap MF_00071 Elongation factor 4 [lepA]. 1 615 280.393 T 14-09-2016 IPR006297 Elongation factor 4 GO:0005525 ccrud_RS10405 549714d74535786607d0ebe965352191 615 PANTHER PTHR23115:SF97 1 613 6.3E-258 T 14-09-2016 ccrud_RS10405 549714d74535786607d0ebe965352191 615 Gene3D G3DSA:3.30.70.870 309 387 9.8E-26 T 14-09-2016 ccrud_RS10405 549714d74535786607d0ebe965352191 615 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 54 69 - T 14-09-2016 IPR031157 Tr-type G domain, conserved site ccrud_RS10405 549714d74535786607d0ebe965352191 615 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 17 192 1.7E-17 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 ccrud_RS10405 549714d74535786607d0ebe965352191 615 Gene3D G3DSA:2.40.30.10 212 306 1.1E-17 T 14-09-2016 ccrud_RS10405 549714d74535786607d0ebe965352191 615 SUPERFAMILY SSF50447 202 299 1.09E-15 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS10405 549714d74535786607d0ebe965352191 615 Gene3D G3DSA:3.30.70.240 418 507 3.8E-20 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain ccrud_RS10405 549714d74535786607d0ebe965352191 615 Gene3D G3DSA:3.40.50.300 11 211 1.8E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10405 549714d74535786607d0ebe965352191 615 PRINTS PR00315 GTP-binding elongation factor signature 106 117 2.6E-13 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS10405 549714d74535786607d0ebe965352191 615 PRINTS PR00315 GTP-binding elongation factor signature 18 31 2.6E-13 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS10405 549714d74535786607d0ebe965352191 615 PRINTS PR00315 GTP-binding elongation factor signature 142 151 2.6E-13 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS10405 549714d74535786607d0ebe965352191 615 PRINTS PR00315 GTP-binding elongation factor signature 90 100 2.6E-13 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS10405 549714d74535786607d0ebe965352191 615 PRINTS PR00315 GTP-binding elongation factor signature 61 69 2.6E-13 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS10405 549714d74535786607d0ebe965352191 615 SMART SM00838 415 499 2.5E-4 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain ccrud_RS10405 549714d74535786607d0ebe965352191 615 Pfam PF00679 Elongation factor G C-terminus 416 502 1.5E-21 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain ccrud_RS09280 fd3429b954c953b4184552fdb32faf35 348 TIGRFAM TIGR03858 LLM_2I7G: probable oxidoreductase, LLM family 6 341 3.0E-145 T 14-09-2016 IPR022290 Conserved hypothetical protein CHP03858, luciferase-like monooxygenase, putative ccrud_RS09280 fd3429b954c953b4184552fdb32faf35 348 PANTHER PTHR30137 3 347 2.8E-106 T 14-09-2016 ccrud_RS09280 fd3429b954c953b4184552fdb32faf35 348 Gene3D G3DSA:3.20.20.30 2 342 1.5E-72 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS09280 fd3429b954c953b4184552fdb32faf35 348 Pfam PF00296 Luciferase-like monooxygenase 21 302 1.0E-38 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS09280 fd3429b954c953b4184552fdb32faf35 348 PANTHER PTHR30137:SF8 3 347 2.8E-106 T 14-09-2016 ccrud_RS09280 fd3429b954c953b4184552fdb32faf35 348 SUPERFAMILY SSF51679 18 342 1.44E-64 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 14-09-2016 IPR023673 Ribosomal protein L1, conserved site ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 227 8.4E-101 T 14-09-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 PANTHER PTHR23105:SF5 19 226 1.2E-79 T 14-09-2016 ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 SUPERFAMILY SSF56808 6 225 3.01E-81 T 14-09-2016 IPR023674 Ribosomal protein L1-like ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 PIRSF PIRSF002155 1 227 2.9E-74 T 14-09-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 Gene3D G3DSA:3.40.50.790 69 159 1.4E-43 T 14-09-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 Gene3D G3DSA:3.30.190.20 19 68 5.5E-40 T 14-09-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 Gene3D G3DSA:3.30.190.20 161 226 5.5E-40 T 14-09-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.54 T 14-09-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 PANTHER PTHR23105 19 226 1.2E-79 T 14-09-2016 ccrud_RS02505 8bb2666e525feddf8711ebe874d8b528 236 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 7.6E-51 T 14-09-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein ccrud_RS00875 2ca988852d37ca437af3aaf1dab6cd44 152 SUPERFAMILY SSF143120 11 61 3.66E-6 T 14-09-2016 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 Hamap MF_00098 Methionine--tRNA ligase [metG]. 3 605 38.61 T 14-09-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 Pfam PF08264 Anticodon-binding domain of tRNA 432 527 9.6E-6 T 14-09-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PANTHER PTHR11946 3 527 3.3E-176 T 14-09-2016 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PANTHER PTHR11946:SF86 571 605 3.3E-176 T 14-09-2016 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PANTHER PTHR11946:SF86 3 527 3.3E-176 T 14-09-2016 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PANTHER PTHR11946 571 605 3.3E-176 T 14-09-2016 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 Gene3D G3DSA:1.10.730.10 395 530 3.3E-54 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 Gene3D G3DSA:1.10.730.10 568 594 3.3E-54 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 527 2.1E-143 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 Gene3D G3DSA:2.20.28.20 143 174 1.1E-18 T 14-09-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 Pfam PF09334 tRNA synthetases class I (M) 5 411 6.2E-144 T 14-09-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 SUPERFAMILY SSF47323 573 598 5.61E-36 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 SUPERFAMILY SSF47323 404 532 5.61E-36 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 SUPERFAMILY SSF57770 140 174 6.93E-12 T 14-09-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 SUPERFAMILY SSF52374 3 139 5.07E-92 T 14-09-2016 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 SUPERFAMILY SSF52374 174 399 5.07E-92 T 14-09-2016 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PRINTS PR01041 Methionyl-tRNA synthetase signature 7 20 4.6E-26 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PRINTS PR01041 Methionyl-tRNA synthetase signature 40 54 4.6E-26 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PRINTS PR01041 Methionyl-tRNA synthetase signature 88 99 4.6E-26 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PRINTS PR01041 Methionyl-tRNA synthetase signature 253 264 4.6E-26 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PRINTS PR01041 Methionyl-tRNA synthetase signature 293 308 4.6E-26 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 PRINTS PR01041 Methionyl-tRNA synthetase signature 399 410 4.6E-26 T 14-09-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 Gene3D G3DSA:3.40.50.620 3 142 1.5E-87 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS04410 e42fc098feb8d4978f2742eda9054f49 610 Gene3D G3DSA:3.40.50.620 181 394 1.5E-87 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS05340 72fd5131e100acfc8ec35e6a165d2ef8 297 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 93 132 9.7E-19 T 14-09-2016 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117|UniPathway: UPA00034 ccrud_RS05340 72fd5131e100acfc8ec35e6a165d2ef8 297 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 214 246 1.2E-14 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS05340 72fd5131e100acfc8ec35e6a165d2ef8 297 SUPERFAMILY SSF51161 65 279 6.28E-36 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS05340 72fd5131e100acfc8ec35e6a165d2ef8 297 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 1 295 39.654 T 14-09-2016 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 ccrud_RS05340 72fd5131e100acfc8ec35e6a165d2ef8 297 Gene3D G3DSA:2.160.10.10 133 294 3.3E-32 T 14-09-2016 ccrud_RS05340 72fd5131e100acfc8ec35e6a165d2ef8 297 TIGRFAM TIGR03535 DapD_actino: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 2 297 1.2E-145 T 14-09-2016 IPR019875 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, actinobacteria KEGG: 00300+2.3.1.117|UniPathway: UPA00034 ccrud_RS05340 72fd5131e100acfc8ec35e6a165d2ef8 297 Gene3D G3DSA:3.30.60.70 93 132 2.7E-5 T 14-09-2016 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117|UniPathway: UPA00034 ccrud_RS07065 f5757e704ec8f45a54b925479023117f 291 SUPERFAMILY SSF46689 14 82 3.05E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS07065 f5757e704ec8f45a54b925479023117f 291 Pfam PF01418 Helix-turn-helix domain, rpiR family 15 83 3.1E-15 T 14-09-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 ccrud_RS07065 f5757e704ec8f45a54b925479023117f 291 Gene3D G3DSA:1.10.10.10 14 83 1.2E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07065 f5757e704ec8f45a54b925479023117f 291 Gene3D G3DSA:3.40.50.10490 113 278 2.8E-23 T 14-09-2016 ccrud_RS07065 f5757e704ec8f45a54b925479023117f 291 Pfam PF01380 SIS domain 137 257 3.7E-10 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 ccrud_RS07065 f5757e704ec8f45a54b925479023117f 291 PANTHER PTHR30514:SF1 14 273 7.2E-31 T 14-09-2016 ccrud_RS07065 f5757e704ec8f45a54b925479023117f 291 PANTHER PTHR30514 14 273 7.2E-31 T 14-09-2016 ccrud_RS07065 f5757e704ec8f45a54b925479023117f 291 SUPERFAMILY SSF53697 107 276 2.02E-24 T 14-09-2016 ccrud_RS01660 8308ba8674c2af8dae8388f69654acb0 211 Gene3D G3DSA:3.60.15.10 13 199 2.0E-42 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01660 8308ba8674c2af8dae8388f69654acb0 211 SUPERFAMILY SSF56281 12 203 7.47E-44 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01660 8308ba8674c2af8dae8388f69654acb0 211 PANTHER PTHR11935 1 200 8.4E-72 T 14-09-2016 ccrud_RS01660 8308ba8674c2af8dae8388f69654acb0 211 SMART SM00849 27 190 3.9E-36 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01660 8308ba8674c2af8dae8388f69654acb0 211 Pfam PF00753 Metallo-beta-lactamase superfamily 28 190 1.3E-21 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01660 8308ba8674c2af8dae8388f69654acb0 211 PANTHER PTHR11935:SF82 1 200 8.4E-72 T 14-09-2016 ccrud_RS11825 f65d63ec86c213a6037a102584ac2f96 271 PANTHER PTHR10655:SF33 29 174 1.6E-21 T 14-09-2016 ccrud_RS11825 f65d63ec86c213a6037a102584ac2f96 271 Pfam PF02230 Phospholipase/Carboxylesterase 100 172 8.9E-6 T 14-09-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 ccrud_RS11825 f65d63ec86c213a6037a102584ac2f96 271 SUPERFAMILY SSF53474 226 239 2.75E-21 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11825 f65d63ec86c213a6037a102584ac2f96 271 SUPERFAMILY SSF53474 10 187 2.75E-21 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11825 f65d63ec86c213a6037a102584ac2f96 271 Gene3D G3DSA:3.40.50.1820 9 268 1.4E-27 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11825 f65d63ec86c213a6037a102584ac2f96 271 PANTHER PTHR10655 29 174 1.6E-21 T 14-09-2016 ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 TIGRFAM TIGR03451 mycoS_dep_FDH: S-(hydroxymethyl)mycothiol dehydrogenase 5 367 1.3E-201 T 14-09-2016 IPR017816 S-(hydroxymethyl)mycothiol dehydrogenase KEGG: 00072+1.1.1.30|KEGG: 00650+1.1.1.30 ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 PANTHER PTHR11695:SF417 17 368 2.1E-185 T 14-09-2016 ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 Gene3D G3DSA:3.90.180.10 7 182 3.4E-53 T 14-09-2016 IPR011032 GroES-like ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 SUPERFAMILY SSF51735 154 333 5.48E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 148 6.0E-28 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 PANTHER PTHR11695 17 368 2.1E-185 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 SUPERFAMILY SSF50129 7 186 7.91E-52 T 14-09-2016 IPR011032 GroES-like ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 Pfam PF00107 Zinc-binding dehydrogenase 190 325 1.1E-26 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 SUPERFAMILY SSF50129 317 366 1.41E-6 T 14-09-2016 IPR011032 GroES-like ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 SMART SM00829 14 366 8.8E-4 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS01655 c328ac6b98ee126664b9790d76fb812c 368 Gene3D G3DSA:3.40.50.720 183 306 1.2E-40 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05625 34a56c9796ad830755514cd9ea5d07eb 238 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 3 215 8.9E-71 T 14-09-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 ccrud_RS05625 34a56c9796ad830755514cd9ea5d07eb 238 PANTHER PTHR13707:SF23 2 231 4.8E-96 T 14-09-2016 ccrud_RS05625 34a56c9796ad830755514cd9ea5d07eb 238 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 14-09-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 ccrud_RS05625 34a56c9796ad830755514cd9ea5d07eb 238 Gene3D G3DSA:3.40.1080.10 3 216 2.4E-80 T 14-09-2016 ccrud_RS05625 34a56c9796ad830755514cd9ea5d07eb 238 PANTHER PTHR13707 2 231 4.8E-96 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS05625 34a56c9796ad830755514cd9ea5d07eb 238 SUPERFAMILY SSF100950 11 225 3.95E-73 T 14-09-2016 ccrud_RS05625 34a56c9796ad830755514cd9ea5d07eb 238 SMART SM00882 6 217 1.2E-67 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS05625 34a56c9796ad830755514cd9ea5d07eb 238 Pfam PF01144 Coenzyme A transferase 8 215 2.1E-63 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS04905 0fbd3fa3d768145d6480ffdf3051549d 239 SUPERFAMILY SSF56752 19 214 9.81E-27 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS04905 0fbd3fa3d768145d6480ffdf3051549d 239 Pfam PF01063 Amino-transferase class IV 22 213 1.2E-21 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS04905 0fbd3fa3d768145d6480ffdf3051549d 239 Gene3D G3DSA:3.20.10.10 122 213 5.4E-10 T 14-09-2016 ccrud_RS09350 35371d7e2e30962ce8572854ea77b43b 314 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 12 294 9.2E-53 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS09350 35371d7e2e30962ce8572854ea77b43b 314 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 35 53 - T 14-09-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 ccrud_RS09350 35371d7e2e30962ce8572854ea77b43b 314 Gene3D G3DSA:3.40.50.1100 45 147 4.9E-15 T 14-09-2016 ccrud_RS09350 35371d7e2e30962ce8572854ea77b43b 314 PANTHER PTHR10314 8 314 1.8E-82 T 14-09-2016 ccrud_RS09350 35371d7e2e30962ce8572854ea77b43b 314 SUPERFAMILY SSF53686 7 312 1.27E-66 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS09350 35371d7e2e30962ce8572854ea77b43b 314 PANTHER PTHR10314:SF109 8 314 1.8E-82 T 14-09-2016 ccrud_RS09350 35371d7e2e30962ce8572854ea77b43b 314 Gene3D G3DSA:3.40.50.1100 6 44 4.6E-47 T 14-09-2016 ccrud_RS09350 35371d7e2e30962ce8572854ea77b43b 314 Gene3D G3DSA:3.40.50.1100 153 312 4.6E-47 T 14-09-2016 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 ProSitePatterns PS00894 DeoR-type HTH domain signature. 13 47 - T 14-09-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 PANTHER PTHR30363:SF1 8 275 1.2E-46 T 14-09-2016 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 SMART SM00420 13 65 3.2E-15 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 SMART SM01134 80 247 2.4E-36 T 14-09-2016 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 SUPERFAMILY SSF100950 82 247 1.99E-15 T 14-09-2016 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 45 63 4.6E-6 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 31 45 4.6E-6 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 PANTHER PTHR30363 8 275 1.2E-46 T 14-09-2016 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 Pfam PF08220 DeoR-like helix-turn-helix domain 13 67 2.0E-16 T 14-09-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 Pfam PF00455 DeoR C terminal sensor domain 82 246 3.0E-31 T 14-09-2016 IPR014036 DeoR C-terminal sensor domain ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 Gene3D G3DSA:1.10.10.10 12 66 2.9E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00620 dbea0889242fcf54e5c0c01d64b7e813 282 SUPERFAMILY SSF46785 11 68 1.8E-11 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 Pfam PF00664 ABC transporter transmembrane region 2 252 2.7E-30 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 SUPERFAMILY SSF52540 321 442 1.46E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 Gene3D G3DSA:3.40.50.300 301 434 3.6E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 SUPERFAMILY SSF90123 2 262 6.41E-46 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 SUPERFAMILY SSF90123 382 390 6.41E-46 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 PANTHER PTHR24221:SF161 1 432 2.4E-54 T 14-09-2016 ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 ProSitePatterns PS00211 ABC transporters family signature. 378 392 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 Pfam PF00005 ABC transporter 317 405 5.5E-8 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 Gene3D G3DSA:1.20.1560.10 2 277 3.9E-46 T 14-09-2016 ccrud_RS06930 e156b2ea8ae090e1face284af2a786fc 457 PANTHER PTHR24221 1 432 2.4E-54 T 14-09-2016 ccrud_RS11015 5aa88f3257032d2e703c1c179623a34b 219 PANTHER PTHR18901 14 198 1.2E-36 T 14-09-2016 ccrud_RS11015 5aa88f3257032d2e703c1c179623a34b 219 Pfam PF13419 Haloacid dehalogenase-like hydrolase 16 198 4.1E-32 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11015 5aa88f3257032d2e703c1c179623a34b 219 SUPERFAMILY SSF56784 14 210 6.51E-39 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11015 5aa88f3257032d2e703c1c179623a34b 219 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 134 198 4.8E-15 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS11015 5aa88f3257032d2e703c1c179623a34b 219 Gene3D G3DSA:3.40.50.1000 103 209 7.8E-32 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11015 5aa88f3257032d2e703c1c179623a34b 219 Gene3D G3DSA:3.40.50.1000 11 27 7.8E-32 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 PANTHER PTHR30562:SF1 318 325 5.0E-240 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 Gene3D G3DSA:1.10.150.20 636 690 7.5E-21 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 PANTHER PTHR30562 548 688 5.0E-240 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 Gene3D G3DSA:4.10.860.10 187 248 7.4E-18 T 14-09-2016 IPR001943 UVR domain GO:0005515 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 PANTHER PTHR30562:SF1 360 517 5.0E-240 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 PANTHER PTHR30562 1 299 5.0E-240 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 SMART SM00465 17 99 4.5E-20 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 Pfam PF01541 GIY-YIG catalytic domain 18 92 1.7E-9 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 PANTHER PTHR30562 360 517 5.0E-240 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 Pfam PF02151 UvrB/uvrC motif 208 242 1.5E-8 T 14-09-2016 IPR001943 UVR domain GO:0005515 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 SUPERFAMILY SSF47781 579 689 5.08E-26 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 PANTHER PTHR30562 318 325 5.0E-240 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 Pfam PF14520 Helix-hairpin-helix domain 637 688 7.7E-10 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 SMART SM00278 636 655 170.0 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 SMART SM00278 668 687 0.18 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 Gene3D G3DSA:3.40.1440.10 17 95 5.0E-11 T 14-09-2016 IPR027299 GIY-YIG domain ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 687 29.8 T 14-09-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 SUPERFAMILY SSF82771 18 101 1.7E-22 T 14-09-2016 IPR000305 GIY-YIG nuclease superfamily ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 PANTHER PTHR30562:SF1 1 299 5.0E-240 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 PANTHER PTHR30562:SF1 548 688 5.0E-240 T 14-09-2016 ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 440 622 9.7E-49 T 14-09-2016 IPR001162 UvrC family homology region ccrud_RS07695 22dab0a7f58e973dda7b6b09047df959 692 SUPERFAMILY SSF46600 194 247 3.66E-13 T 14-09-2016 IPR001943 UVR domain GO:0005515 ccrud_RS10235 36d122c102bd08475df85789ff78ad83 312 PANTHER PTHR35841 10 254 4.5E-24 T 14-09-2016 ccrud_RS10235 36d122c102bd08475df85789ff78ad83 312 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 39 293 3.8E-57 T 14-09-2016 ccrud_RS10235 36d122c102bd08475df85789ff78ad83 312 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 19 254 2.4E-57 T 14-09-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 ccrud_RS10235 36d122c102bd08475df85789ff78ad83 312 Gene3D G3DSA:3.40.190.10 129 236 1.6E-8 T 14-09-2016 ccrud_RS10235 36d122c102bd08475df85789ff78ad83 312 SUPERFAMILY SSF53850 35 305 3.83E-51 T 14-09-2016 ccrud_RS13765 c9d83bd9adbbf7a45cb087d50a9a5ad3 60 Pfam PF02416 mttA/Hcf106 family 5 53 2.0E-19 T 14-09-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 ccrud_RS13765 c9d83bd9adbbf7a45cb087d50a9a5ad3 60 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 59 18.836 T 14-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 ccrud_RS13765 c9d83bd9adbbf7a45cb087d50a9a5ad3 60 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 5 48 2.9E-18 T 14-09-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 ccrud_RS13765 c9d83bd9adbbf7a45cb087d50a9a5ad3 60 PANTHER PTHR33162 5 50 1.1E-12 T 14-09-2016 ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 PANTHER PTHR11695 126 365 1.2E-127 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 PANTHER PTHR11695 15 106 1.2E-127 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 Gene3D G3DSA:3.90.180.10 2 188 3.6E-55 T 14-09-2016 IPR011032 GroES-like ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 154 6.6E-22 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 SUPERFAMILY SSF51735 158 328 3.31E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 SUPERFAMILY SSF50129 1 192 6.09E-59 T 14-09-2016 IPR011032 GroES-like ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 PANTHER PTHR11695:SF571 126 365 1.2E-127 T 14-09-2016 ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 PANTHER PTHR11695:SF571 15 106 1.2E-127 T 14-09-2016 ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 60 74 - T 14-09-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 Pfam PF00107 Zinc-binding dehydrogenase 196 322 1.8E-26 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 Gene3D G3DSA:3.40.50.720 189 304 3.4E-39 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11065 b3a74c50199e06692f016464ec83ee5e 366 SMART SM00829 10 363 3.5E-5 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS04270 182db6292403816a0f8464a42db01ea0 284 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 155 249 3.4E-6 T 14-09-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 SUPERFAMILY SSF55831 5 266 2.09E-120 T 14-09-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 ProSitePatterns PS00091 Thymidylate synthase active site. 129 157 - T 14-09-2016 IPR020940 Thymidylate synthase, active site GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 PANTHER PTHR11548 7 266 5.2E-168 T 14-09-2016 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 Hamap MF_00008 Thymidylate synthase [thyA]. 4 266 43.03 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 PRINTS PR00108 Thymidylate synthase family signature 45 66 3.9E-46 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 PRINTS PR00108 Thymidylate synthase family signature 200 217 3.9E-46 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 PRINTS PR00108 Thymidylate synthase family signature 118 137 3.9E-46 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 PRINTS PR00108 Thymidylate synthase family signature 144 159 3.9E-46 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 PRINTS PR00108 Thymidylate synthase family signature 162 188 3.9E-46 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 6 87 8.9E-39 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 88 266 1.6E-87 T 14-09-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 Gene3D G3DSA:3.30.572.10 7 266 3.5E-124 T 14-09-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS04160 cf1bb64ad842731f43093267682f7d66 266 Pfam PF00303 Thymidylate synthase 6 266 1.7E-117 T 14-09-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 ccrud_RS11610 45c2162d6ccf8916af8ff62112a8fd29 375 Gene3D G3DSA:3.40.190.10 57 210 7.6E-41 T 14-09-2016 ccrud_RS11610 45c2162d6ccf8916af8ff62112a8fd29 375 Gene3D G3DSA:3.40.190.10 236 371 3.0E-12 T 14-09-2016 ccrud_RS11610 45c2162d6ccf8916af8ff62112a8fd29 375 PANTHER PTHR30570:SF0 63 375 1.1E-72 T 14-09-2016 ccrud_RS11610 45c2162d6ccf8916af8ff62112a8fd29 375 PIRSF PIRSF002756 5 375 5.6E-100 T 14-09-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 ccrud_RS11610 45c2162d6ccf8916af8ff62112a8fd29 375 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 61 374 9.2E-71 T 14-09-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 ccrud_RS11610 45c2162d6ccf8916af8ff62112a8fd29 375 PANTHER PTHR30570 63 375 1.1E-72 T 14-09-2016 ccrud_RS11610 45c2162d6ccf8916af8ff62112a8fd29 375 Pfam PF12849 PBP superfamily domain 52 345 3.2E-56 T 14-09-2016 IPR024370 PBP domain ccrud_RS11610 45c2162d6ccf8916af8ff62112a8fd29 375 SUPERFAMILY SSF53850 59 374 6.08E-76 T 14-09-2016 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 SUPERFAMILY SSF48592 371 524 1.39E-28 T 14-09-2016 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 Gene3D G3DSA:1.10.560.10 367 517 3.8E-32 T 14-09-2016 IPR027413 GroEL-like equatorial domain ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 14-09-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 Gene3D G3DSA:1.10.560.10 6 186 5.9E-44 T 14-09-2016 IPR027413 GroEL-like equatorial domain ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 523 2.2E-89 T 14-09-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 PANTHER PTHR11353 5 526 1.6E-180 T 14-09-2016 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 SUPERFAMILY SSF48592 2 229 1.09E-61 T 14-09-2016 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 TIGRFAM TIGR02348 GroEL: chaperonin GroL 2 525 9.3E-214 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 PRINTS PR00298 60kDa chaperonin signature 348 373 4.4E-63 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 PRINTS PR00298 60kDa chaperonin signature 26 52 4.4E-63 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 PRINTS PR00298 60kDa chaperonin signature 396 417 4.4E-63 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 PRINTS PR00298 60kDa chaperonin signature 266 289 4.4E-63 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 PRINTS PR00298 60kDa chaperonin signature 82 109 4.4E-63 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 SUPERFAMILY SSF52029 182 374 9.57E-71 T 14-09-2016 IPR027409 GroEL-like apical domain ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 Gene3D G3DSA:3.50.7.10 187 366 7.0E-82 T 14-09-2016 IPR027409 GroEL-like apical domain ccrud_RS03050 1eb8af3d73cab3de0c918c6520ebce2e 538 Hamap MF_00600 60 kDa chaperonin [groL]. 1 535 38.044 T 14-09-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 ccrud_RS12425 93a6448e5ea4ef2950e28f4837696df1 345 SMART SM00062 94 321 3.1E-50 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ccrud_RS12425 93a6448e5ea4ef2950e28f4837696df1 345 SUPERFAMILY SSF53850 84 319 2.18E-45 T 14-09-2016 ccrud_RS12425 93a6448e5ea4ef2950e28f4837696df1 345 Gene3D G3DSA:3.40.190.10 176 276 1.6E-19 T 14-09-2016 ccrud_RS12425 93a6448e5ea4ef2950e28f4837696df1 345 PANTHER PTHR18966 74 318 4.3E-49 T 14-09-2016 ccrud_RS12425 93a6448e5ea4ef2950e28f4837696df1 345 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 95 319 9.1E-42 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ccrud_RS12425 93a6448e5ea4ef2950e28f4837696df1 345 PANTHER PTHR18966:SF234 74 318 4.3E-49 T 14-09-2016 ccrud_RS12425 93a6448e5ea4ef2950e28f4837696df1 345 Gene3D G3DSA:3.40.190.10 277 319 5.4E-24 T 14-09-2016 ccrud_RS12425 93a6448e5ea4ef2950e28f4837696df1 345 Gene3D G3DSA:3.40.190.10 92 175 5.4E-24 T 14-09-2016 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 Gene3D G3DSA:3.40.220.10 27 177 8.3E-21 T 14-09-2016 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 185 490 7.6E-109 T 14-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 PRINTS PR00481 Cytosol aminopeptidase signature 282 303 7.0E-49 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 PRINTS PR00481 Cytosol aminopeptidase signature 341 361 7.0E-49 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 PRINTS PR00481 Cytosol aminopeptidase signature 260 277 7.0E-49 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 PRINTS PR00481 Cytosol aminopeptidase signature 319 340 7.0E-49 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 PRINTS PR00481 Cytosol aminopeptidase signature 369 384 7.0E-49 T 14-09-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 14 499 32.571 T 14-09-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 Gene3D G3DSA:3.40.630.10 178 498 2.2E-126 T 14-09-2016 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 SUPERFAMILY SSF52949 27 164 2.0E-18 T 14-09-2016 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 PANTHER PTHR11963 19 499 1.4E-161 T 14-09-2016 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 30 148 1.4E-18 T 14-09-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 PANTHER PTHR11963:SF13 19 499 1.4E-161 T 14-09-2016 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 345 352 - T 14-09-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 ccrud_RS09710 614cc79578e773a00079fdaa1a3d8bed 500 SUPERFAMILY SSF53187 180 497 3.77E-108 T 14-09-2016 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 285 300 4.1E-12 T 14-09-2016 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 4.1E-12 T 14-09-2016 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 154 169 4.1E-12 T 14-09-2016 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 300 316 4.1E-12 T 14-09-2016 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 PANTHER PTHR10617 5 354 1.7E-63 T 14-09-2016 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 Pfam PF01494 FAD binding domain 8 321 2.1E-18 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 Gene3D G3DSA:3.30.9.10 174 322 1.3E-43 T 14-09-2016 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 TIGRFAM TIGR02032 GG-red-SF: geranylgeranyl reductase family 8 318 1.7E-84 T 14-09-2016 IPR011777 Geranylgeranyl reductase family GO:0016628|GO:0055114 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 SUPERFAMILY SSF51905 272 382 7.65E-41 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 SUPERFAMILY SSF51905 8 175 7.65E-41 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 PANTHER PTHR10617:SF101 5 354 1.7E-63 T 14-09-2016 ccrud_RS02455 f90f791e5a1d79c567c97e5ec49bf447 421 Gene3D G3DSA:3.50.50.60 6 173 5.1E-18 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 8 16 - T 14-09-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 PANTHER PTHR11587 3 401 6.4E-177 T 14-09-2016 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 Pfam PF00764 Arginosuccinate synthase 6 391 4.7E-182 T 14-09-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 Gene3D G3DSA:3.40.50.620 4 173 8.7E-52 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 Hamap MF_00005 Argininosuccinate synthase [argG]. 2 396 49.761 T 14-09-2016 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 PANTHER PTHR11587:SF2 3 401 6.4E-177 T 14-09-2016 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 SUPERFAMILY SSF69864 171 396 2.35E-83 T 14-09-2016 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 SUPERFAMILY SSF52402 3 204 5.29E-39 T 14-09-2016 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 117 128 - T 14-09-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 TIGRFAM TIGR00032 argG: argininosuccinate synthase 4 393 1.6E-136 T 14-09-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06715 a6f4e2bed8e9406d832a3435f56faa17 401 Gene3D G3DSA:3.90.1260.10 174 398 6.4E-80 T 14-09-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS04035 d5d5fbb449f9170246a8bb2ec6d667b1 191 Pfam PF11574 Protein of unknown function (DUF3235) 116 188 2.1E-13 T 14-09-2016 IPR021630 Domain of unknown function DUF3235 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- ccrud_RS04035 d5d5fbb449f9170246a8bb2ec6d667b1 191 Gene3D G3DSA:1.10.1200.100 116 187 1.1E-14 T 14-09-2016 IPR021630 Domain of unknown function DUF3235 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- ccrud_RS04035 d5d5fbb449f9170246a8bb2ec6d667b1 191 Gene3D G3DSA:1.10.530.10 15 115 1.0E-42 T 14-09-2016 ccrud_RS04035 d5d5fbb449f9170246a8bb2ec6d667b1 191 Pfam PF06737 Transglycosylase-like domain 36 111 1.2E-33 T 14-09-2016 IPR010618 Transglycosylase-like ccrud_RS04035 d5d5fbb449f9170246a8bb2ec6d667b1 191 SUPERFAMILY SSF53955 36 117 6.67E-32 T 14-09-2016 IPR023346 Lysozyme-like domain ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 SUPERFAMILY SSF52540 260 561 6.32E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 Gene3D G3DSA:3.30.870.10 36 169 1.9E-5 T 14-09-2016 ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 Pfam PF11907 Domain of unknown function (DUF3427) 683 963 4.7E-87 T 14-09-2016 IPR021835 Protein of unknown function DUF3427 ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 PANTHER PTHR30195 128 938 4.6E-58 T 14-09-2016 ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 PANTHER PTHR30195:SF16 128 938 4.6E-58 T 14-09-2016 ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 Pfam PF00271 Helicase conserved C-terminal domain 426 539 9.3E-11 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 Pfam PF13091 PLD-like domain 52 159 3.1E-10 T 14-09-2016 IPR025202 Phospholipase D-like domain ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 SUPERFAMILY SSF56024 72 183 1.26E-5 T 14-09-2016 ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 Pfam PF04851 Type III restriction enzyme, res subunit 214 363 1.4E-31 T 14-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 SMART SM00487 210 390 2.3E-16 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 Gene3D G3DSA:3.40.50.300 421 563 1.0E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 SMART SM00490 455 541 4.8E-9 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS05550 0f392c0ae61aa562c39952dc30eb93e8 971 Gene3D G3DSA:3.40.50.300 207 367 9.2E-26 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10070 7c82e8fcf642ffd9c37ae5bc2d2dd27c 357 Gene3D G3DSA:1.20.1260.10 19 75 1.8E-7 T 14-09-2016 IPR012347 Ferritin-related ccrud_RS10070 7c82e8fcf642ffd9c37ae5bc2d2dd27c 357 Pfam PF01988 VIT family 139 350 3.0E-52 T 14-09-2016 IPR008217 Ccc1 family ccrud_RS10070 7c82e8fcf642ffd9c37ae5bc2d2dd27c 357 PANTHER PTHR31851:SF1 20 357 4.9E-41 T 14-09-2016 ccrud_RS10070 7c82e8fcf642ffd9c37ae5bc2d2dd27c 357 PANTHER PTHR31851 20 357 4.9E-41 T 14-09-2016 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 109 128 1.6E-27 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 187 195 1.6E-27 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 87 101 1.6E-27 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 38 50 1.6E-27 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 134 143 1.6E-27 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 50 64 1.6E-27 T 14-09-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 SUPERFAMILY SSF52343 100 221 4.98E-26 T 14-09-2016 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 Gene3D G3DSA:3.10.20.30 214 312 1.4E-22 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 264 272 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 PANTHER PTHR22924:SF20 1 271 5.5E-62 T 14-09-2016 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 PANTHER PTHR22924 1 271 5.5E-62 T 14-09-2016 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 SUPERFAMILY SSF63380 3 97 4.3E-26 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 Pfam PF00970 Oxidoreductase FAD-binding domain 7 96 2.9E-6 T 14-09-2016 IPR008333 Oxidoreductase, FAD-binding domain ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 Gene3D G3DSA:2.40.30.10 3 97 2.4E-29 T 14-09-2016 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 SUPERFAMILY SSF54292 209 313 1.84E-21 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 235 305 1.6E-10 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS12890 6325a61c6e69e7f4e3196f95a4e02463 316 Gene3D G3DSA:3.40.50.80 101 213 8.1E-28 T 14-09-2016 ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 Pfam PF02132 RecR protein 39 77 4.0E-12 T 14-09-2016 IPR023628 Recombination protein RecR, C4-type zinc finger ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 TIGRFAM TIGR00615 recR: recombination protein RecR 2 215 6.8E-70 T 14-09-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 Hamap MF_00017 Recombination protein RecR [recR]. 1 218 92.472 T 14-09-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 Pfam PF13662 Toprim domain 80 191 7.8E-18 T 14-09-2016 IPR006171 Toprim domain ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 Gene3D G3DSA:3.40.50.140 82 190 5.1E-5 T 14-09-2016 IPR006171 Toprim domain ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 PANTHER PTHR30446:SF0 1 130 9.7E-93 T 14-09-2016 ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 PANTHER PTHR30446:SF0 151 218 9.7E-93 T 14-09-2016 ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 SMART SM00278 11 30 0.0025 T 14-09-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 PANTHER PTHR30446 151 218 9.7E-93 T 14-09-2016 ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 SMART SM00493 79 184 2.1E-10 T 14-09-2016 IPR006171 Toprim domain ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 PANTHER PTHR30446 1 130 9.7E-93 T 14-09-2016 ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 ProSitePatterns PS01300 RecR protein signature. 56 77 - T 14-09-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 ccrud_RS01285 1f5f3e3fc1a339ab3fbb5d7cdf9724b2 218 SUPERFAMILY SSF111304 3 218 3.66E-65 T 14-09-2016 IPR023627 Recombination protein RecR ccrud_RS02220 9fc9b78988876f9a5e843aee7e3399a8 364 SMART SM00382 29 212 5.2E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS02220 9fc9b78988876f9a5e843aee7e3399a8 364 SUPERFAMILY SSF52540 4 241 9.43E-77 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02220 9fc9b78988876f9a5e843aee7e3399a8 364 Pfam PF00005 ABC transporter 20 162 4.8E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS02220 9fc9b78988876f9a5e843aee7e3399a8 364 PANTHER PTHR24220 5 246 1.5E-99 T 14-09-2016 ccrud_RS02220 9fc9b78988876f9a5e843aee7e3399a8 364 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS02220 9fc9b78988876f9a5e843aee7e3399a8 364 Gene3D G3DSA:3.40.50.300 4 234 1.3E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02220 9fc9b78988876f9a5e843aee7e3399a8 364 PANTHER PTHR24220:SF150 5 246 1.5E-99 T 14-09-2016 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 SUPERFAMILY SSF52540 15 207 4.24E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 175 6.4E-18 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 SUPERFAMILY SSF54814 188 305 4.84E-32 T 14-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 TIGRFAM TIGR00436 era: GTP-binding protein Era 13 288 1.9E-67 T 14-09-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 Gene3D G3DSA:3.30.300.20 198 301 5.7E-30 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 37 55 3.9E-7 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 15 35 3.9E-7 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 91 106 3.9E-7 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 Hamap MF_00367 GTPase Era [era]. 10 305 32.866 T 14-09-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 PANTHER PTHR11649 4 305 1.0E-86 T 14-09-2016 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 Pfam PF07650 KH domain 215 294 2.3E-14 T 14-09-2016 IPR004044 K Homology domain, type 2 GO:0003723 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 PANTHER PTHR11649:SF3 4 305 1.0E-86 T 14-09-2016 ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 Gene3D G3DSA:3.40.50.300 11 181 2.5E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10085 0b7e20cbe8ceb0364cce18895d3a013a 305 Pfam PF01926 50S ribosome-binding GTPase 15 118 1.6E-20 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 PANTHER PTHR22604 322 409 9.2E-65 T 14-09-2016 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 PANTHER PTHR22604:SF123 2 223 9.2E-65 T 14-09-2016 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 148 213 2.9E-6 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 SUPERFAMILY SSF55347 141 310 1.41E-29 T 14-09-2016 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 Gene3D G3DSA:3.40.50.720 3 155 3.5E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 Gene3D G3DSA:3.30.360.10 347 401 1.4E-33 T 14-09-2016 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 Gene3D G3DSA:3.30.360.10 156 294 1.4E-33 T 14-09-2016 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 6 125 4.3E-24 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 PANTHER PTHR22604 243 305 9.2E-65 T 14-09-2016 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 PANTHER PTHR22604 2 223 9.2E-65 T 14-09-2016 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 SUPERFAMILY SSF51735 5 167 2.12E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 PANTHER PTHR22604:SF123 322 409 9.2E-65 T 14-09-2016 ccrud_RS00890 69aae69691f934d496c343c4825bf9c9 409 PANTHER PTHR22604:SF123 243 305 9.2E-65 T 14-09-2016 ccrud_RS09235 423ac11dd0ff3268a1509c19fda1f2c0 336 Gene3D G3DSA:1.10.3470.10 3 328 1.1E-91 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS09235 423ac11dd0ff3268a1509c19fda1f2c0 336 Pfam PF01032 FecCD transport family 11 325 2.7E-85 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS09235 423ac11dd0ff3268a1509c19fda1f2c0 336 PANTHER PTHR30472:SF3 1 331 2.0E-94 T 14-09-2016 ccrud_RS09235 423ac11dd0ff3268a1509c19fda1f2c0 336 SUPERFAMILY SSF81345 4 325 2.88E-72 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS09235 423ac11dd0ff3268a1509c19fda1f2c0 336 PANTHER PTHR30472 1 331 2.0E-94 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03335 e502199f0d75c248ce6d4a48ac970ea0 305 SUPERFAMILY SSF56219 4 198 8.77E-61 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS03335 e502199f0d75c248ce6d4a48ac970ea0 305 SUPERFAMILY SSF56219 232 304 8.77E-61 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS03335 e502199f0d75c248ce6d4a48ac970ea0 305 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 4 198 1.7E-32 T 14-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 ccrud_RS03335 e502199f0d75c248ce6d4a48ac970ea0 305 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 7 297 3.2E-21 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS03335 e502199f0d75c248ce6d4a48ac970ea0 305 Gene3D G3DSA:3.60.10.10 232 304 2.7E-78 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS03335 e502199f0d75c248ce6d4a48ac970ea0 305 Gene3D G3DSA:3.60.10.10 3 198 2.7E-78 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS03335 e502199f0d75c248ce6d4a48ac970ea0 305 PANTHER PTHR22748 5 196 1.9E-62 T 14-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 ccrud_RS03335 e502199f0d75c248ce6d4a48ac970ea0 305 PANTHER PTHR22748 231 303 1.9E-62 T 14-09-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 ccrud_RS07010 d60d73afa018c24b6b92333ccae25906 354 Pfam PF01595 Domain of unknown function DUF21 8 202 9.0E-46 T 14-09-2016 IPR002550 Domain of unknown function DUF21 ccrud_RS07010 d60d73afa018c24b6b92333ccae25906 354 Pfam PF00571 CBS domain 238 276 1.1E-4 T 14-09-2016 IPR000644 CBS domain ccrud_RS07010 d60d73afa018c24b6b92333ccae25906 354 PANTHER PTHR22777:SF18 1 346 3.8E-95 T 14-09-2016 ccrud_RS07010 d60d73afa018c24b6b92333ccae25906 354 Gene3D G3DSA:3.10.580.10 216 346 4.2E-10 T 14-09-2016 ccrud_RS07010 d60d73afa018c24b6b92333ccae25906 354 PANTHER PTHR22777 1 346 3.8E-95 T 14-09-2016 ccrud_RS07010 d60d73afa018c24b6b92333ccae25906 354 SUPERFAMILY SSF54631 217 350 6.32E-19 T 14-09-2016 ccrud_RS12955 0fa1872ebeb85162b7b3e3f1765e5d9a 302 SUPERFAMILY SSF161098 102 292 4.32E-23 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS12955 0fa1872ebeb85162b7b3e3f1765e5d9a 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 125 301 6.1E-19 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS12955 0fa1872ebeb85162b7b3e3f1765e5d9a 302 Gene3D G3DSA:1.10.3720.10 100 301 1.1E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS12955 0fa1872ebeb85162b7b3e3f1765e5d9a 302 PANTHER PTHR30465 24 301 9.1E-65 T 14-09-2016 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 Pfam PF01565 FAD binding domain 36 160 1.5E-19 T 14-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 Gene3D G3DSA:3.30.43.10 25 85 8.5E-13 T 14-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 SUPERFAMILY SSF56194 230 364 1.83E-32 T 14-09-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 Gene3D G3DSA:3.30.465.10 241 257 3.6E-44 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 Gene3D G3DSA:3.30.465.10 92 204 3.6E-44 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 Gene3D G3DSA:3.90.78.10 258 366 4.2E-43 T 14-09-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 PANTHER PTHR21071 1 366 1.3E-101 T 14-09-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 368 68.636 T 14-09-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 PANTHER PTHR21071:SF6 1 366 1.3E-101 T 14-09-2016 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 230 362 9.4E-37 T 14-09-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS02095 e81c953dcf8dac113648ce25cef7de91 368 SUPERFAMILY SSF56176 25 197 4.67E-32 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 SMART SM00642 200 539 2.8E-4 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 PANTHER PTHR10357:SF137 167 673 2.1E-219 T 14-09-2016 ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 1 656 44.295 T 14-09-2016 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16 ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 SUPERFAMILY SSF51445 201 561 6.15E-80 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 Gene3D G3DSA:3.20.20.80 201 559 1.3E-63 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 Gene3D G3DSA:2.60.40.1180 565 644 4.1E-8 T 14-09-2016 IPR013780 Glycosyl hydrolase, all-beta ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 Pfam PF11896 Domain of unknown function (DUF3416) 3 194 1.5E-47 T 14-09-2016 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16 ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 PANTHER PTHR10357:SF137 4 133 2.1E-219 T 14-09-2016 ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 PANTHER PTHR10357 167 673 2.1E-219 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 PANTHER PTHR10357 4 133 2.1E-219 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS05890 2383860355db9c35f9f15d872d5cc096 675 SUPERFAMILY SSF51011 565 645 2.88E-5 T 14-09-2016 ccrud_RS01455 3f2a1114cd467cac4a2cf9f7c25327b4 152 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 7 151 1.1E-32 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS01455 3f2a1114cd467cac4a2cf9f7c25327b4 152 PANTHER PTHR11803 1 151 6.6E-47 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family ccrud_RS01455 3f2a1114cd467cac4a2cf9f7c25327b4 152 PANTHER PTHR11803:SF2 1 151 6.6E-47 T 14-09-2016 ccrud_RS01455 3f2a1114cd467cac4a2cf9f7c25327b4 152 SUPERFAMILY SSF55298 2 151 2.67E-55 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS01455 3f2a1114cd467cac4a2cf9f7c25327b4 152 Gene3D G3DSA:3.30.1330.40 2 151 1.8E-66 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 71 100 1.3E-78 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 365 387 1.3E-78 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 254 281 1.3E-78 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 8 31 1.3E-78 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 124 149 1.3E-78 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 172 200 1.3E-78 T 14-09-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 SUPERFAMILY SSF51735 8 181 5.44E-54 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 ProSitePatterns PS00461 6-phosphogluconate dehydrogenase signature. 258 270 - T 14-09-2016 IPR006184 6-phosphogluconate-binding site GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 9 175 5.3E-52 T 14-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 183 475 4.6E-123 T 14-09-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 Gene3D G3DSA:1.20.5.320 444 483 2.5E-21 T 14-09-2016 IPR012284 6-phosphogluconate dehydrogenase, domain 3 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 PANTHER PTHR11811:SF25 6 484 4.8E-274 T 14-09-2016 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 SUPERFAMILY SSF48179 181 479 2.93E-118 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 Gene3D G3DSA:1.10.1040.10 185 442 2.7E-104 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 PIRSF PIRSF000109 3 484 6.4E-204 T 14-09-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 Gene3D G3DSA:3.40.50.720 6 184 1.4E-59 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 PANTHER PTHR11811 6 484 4.8E-274 T 14-09-2016 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 SMART SM01350 183 476 3.6E-204 T 14-09-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS07040 dc3af0b8d10d5fd2fcdda589cddbba19 484 TIGRFAM TIGR00873 gnd: 6-phosphogluconate dehydrogenase (decarboxylating) 9 476 6.2E-209 T 14-09-2016 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 PANTHER PTHR11659 12 500 4.2E-210 T 14-09-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 166 180 - T 14-09-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 PANTHER PTHR11659:SF0 12 500 4.2E-210 T 14-09-2016 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 Gene3D G3DSA:1.10.10.410 443 501 1.9E-7 T 14-09-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 SMART SM00845 353 500 5.0E-57 T 14-09-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 SUPERFAMILY SSF55931 20 322 1.18E-105 T 14-09-2016 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 17 500 7.4E-145 T 14-09-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 Pfam PF02934 GatB/GatE catalytic domain 21 315 4.5E-100 T 14-09-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 Pfam PF02637 GatB domain 355 500 3.1E-40 T 14-09-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 17 501 35.602 T 14-09-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 ccrud_RS06055 dbc764f0169df0593160bf466c03d014 501 SUPERFAMILY SSF89095 353 500 2.22E-26 T 14-09-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 Gene3D G3DSA:3.40.50.300 172 379 4.5E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 220 362 7.4E-46 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 TIGRFAM TIGR03689 pup_AAA: proteasome ATPase 1 496 2.0E-238 T 14-09-2016 IPR022482 Proteasome ATPase GO:0000502|GO:0010498|GO:0016887|GO:0019941 ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 PANTHER PTHR23077 176 373 1.1E-86 T 14-09-2016 ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 SUPERFAMILY SSF52540 171 387 5.95E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 SUPERFAMILY SSF52540 411 435 5.95E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 Hamap MF_02112 Proteasome-associated ATPase [mpa]. 2 497 47.909 T 14-09-2016 IPR022482 Proteasome ATPase GO:0000502|GO:0010498|GO:0016887|GO:0019941 ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 SMART SM00382 216 365 6.5E-21 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 Pfam PF16450 Proteasomal ATPase OB/ID domain 44 176 5.8E-44 T 14-09-2016 IPR032501 Proteasomal ATPase, OB/ID domain ccrud_RS07270 df8e8ada89d27fa05f57b0f4128ab967 497 ProSitePatterns PS00674 AAA-protein family signature. 333 351 - T 14-09-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 ccrud_RS00200 2c580f46f0c5e9970e7a728321fdcf44 446 PANTHER PTHR23508:SF19 1 434 1.4E-149 T 14-09-2016 ccrud_RS00200 2c580f46f0c5e9970e7a728321fdcf44 446 ProSitePatterns PS00216 Sugar transport proteins signature 1. 279 295 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS00200 2c580f46f0c5e9970e7a728321fdcf44 446 Pfam PF07690 Major Facilitator Superfamily 40 357 1.4E-26 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS00200 2c580f46f0c5e9970e7a728321fdcf44 446 SUPERFAMILY SSF103473 2 404 7.72E-60 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS00200 2c580f46f0c5e9970e7a728321fdcf44 446 PANTHER PTHR23508 1 434 1.4E-149 T 14-09-2016 ccrud_RS00200 2c580f46f0c5e9970e7a728321fdcf44 446 Gene3D G3DSA:1.20.1250.20 230 407 1.7E-16 T 14-09-2016 ccrud_RS00200 2c580f46f0c5e9970e7a728321fdcf44 446 Gene3D G3DSA:1.20.1250.20 2 210 1.1E-22 T 14-09-2016 ccrud_RS03470 be2cf22cef6a801da51a4d8cb6b8c8f4 716 PANTHER PTHR23028 438 578 7.9E-75 T 14-09-2016 ccrud_RS03470 be2cf22cef6a801da51a4d8cb6b8c8f4 716 PANTHER PTHR23028 12 416 7.9E-75 T 14-09-2016 ccrud_RS03470 be2cf22cef6a801da51a4d8cb6b8c8f4 716 PANTHER PTHR23028:SF53 438 578 7.9E-75 T 14-09-2016 ccrud_RS03470 be2cf22cef6a801da51a4d8cb6b8c8f4 716 PANTHER PTHR23028:SF53 12 416 7.9E-75 T 14-09-2016 ccrud_RS03470 be2cf22cef6a801da51a4d8cb6b8c8f4 716 Pfam PF01757 Acyltransferase family 33 358 7.6E-22 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 ccrud_RS13120 e9797540bd9c5099199fc56b84833db4 168 Pfam PF01569 PAP2 superfamily 60 162 1.9E-18 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS13120 e9797540bd9c5099199fc56b84833db4 168 Gene3D G3DSA:1.20.144.10 6 163 3.7E-27 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS13120 e9797540bd9c5099199fc56b84833db4 168 PANTHER PTHR14969 20 165 1.6E-34 T 14-09-2016 ccrud_RS13120 e9797540bd9c5099199fc56b84833db4 168 SMART SM00014 58 161 5.3E-15 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS13120 e9797540bd9c5099199fc56b84833db4 168 PANTHER PTHR14969:SF24 20 165 1.6E-34 T 14-09-2016 ccrud_RS13120 e9797540bd9c5099199fc56b84833db4 168 SUPERFAMILY SSF48317 12 167 4.97E-40 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 SUPERFAMILY SSF161070 18 500 8.11E-135 T 14-09-2016 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 42 56 - T 14-09-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 325 344 5.9E-29 T 14-09-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 403 423 5.9E-29 T 14-09-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 55 74 5.9E-29 T 14-09-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 26 47 5.9E-29 T 14-09-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 99 125 5.9E-29 T 14-09-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 PANTHER PTHR11616 16 500 2.6E-141 T 14-09-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 Pfam PF00209 Sodium:neurotransmitter symporter family 140 485 2.4E-73 T 14-09-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 Pfam PF00209 Sodium:neurotransmitter symporter family 18 135 3.5E-41 T 14-09-2016 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 ccrud_RS05035 060d670259fc6363b1a91402148e34ad 563 PANTHER PTHR11616:SF11 16 500 2.6E-141 T 14-09-2016 ccrud_RS01450 a0670c5029fe92d3b16e6b31bfda2182 116 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 6 100 15.477 T 14-09-2016 IPR003482 Transcription factor WhiB ccrud_RS01450 a0670c5029fe92d3b16e6b31bfda2182 116 PANTHER PTHR38839:SF3 22 110 1.9E-38 T 14-09-2016 ccrud_RS01450 a0670c5029fe92d3b16e6b31bfda2182 116 Pfam PF02467 Transcription factor WhiB 31 93 9.4E-22 T 14-09-2016 IPR003482 Transcription factor WhiB ccrud_RS01450 a0670c5029fe92d3b16e6b31bfda2182 116 PANTHER PTHR38839 22 110 1.9E-38 T 14-09-2016 ccrud_RS05895 5255a6f93c6b3934ebc81540e0d1d2ef 280 PANTHER PTHR24220 18 260 4.8E-94 T 14-09-2016 ccrud_RS05895 5255a6f93c6b3934ebc81540e0d1d2ef 280 SUPERFAMILY SSF52540 12 250 5.15E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05895 5255a6f93c6b3934ebc81540e0d1d2ef 280 SMART SM00382 41 240 2.1E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05895 5255a6f93c6b3934ebc81540e0d1d2ef 280 PANTHER PTHR24220:SF383 18 260 4.8E-94 T 14-09-2016 ccrud_RS05895 5255a6f93c6b3934ebc81540e0d1d2ef 280 Pfam PF00005 ABC transporter 35 184 2.1E-26 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05895 5255a6f93c6b3934ebc81540e0d1d2ef 280 Gene3D G3DSA:3.40.50.300 10 253 3.9E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 3 336 4.3E-86 T 14-09-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 1 339 48.282 T 14-09-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 Gene3D G3DSA:3.90.1150.10 253 337 3.1E-9 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 PANTHER PTHR11751:SF347 1 339 2.7E-81 T 14-09-2016 ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 Pfam PF00155 Aminotransferase class I and II 21 333 9.1E-53 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 Gene3D G3DSA:3.40.640.10 34 252 1.8E-68 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 PANTHER PTHR11751 1 339 2.7E-81 T 14-09-2016 ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 Hamap MF_01513 Putative phenylalanine aminotransferase [pat]. 2 340 45.756 T 14-09-2016 IPR024892 Putative phenylalanine aminotransferase ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 210 219 - T 14-09-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 ccrud_RS01160 d3508bbdd23e900054e805900e94aea4 341 SUPERFAMILY SSF53383 17 336 2.89E-78 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS11905 6913f6c8456c40be6d79f3d4c9bc72a2 242 Pfam PF09339 IclR helix-turn-helix domain 1 45 1.1E-10 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS11905 6913f6c8456c40be6d79f3d4c9bc72a2 242 Pfam PF01614 Bacterial transcriptional regulator 122 223 1.7E-10 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal ccrud_RS11905 6913f6c8456c40be6d79f3d4c9bc72a2 242 SUPERFAMILY SSF55781 71 236 2.88E-26 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS11905 6913f6c8456c40be6d79f3d4c9bc72a2 242 Gene3D G3DSA:1.10.10.10 1 54 1.1E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11905 6913f6c8456c40be6d79f3d4c9bc72a2 242 SMART SM00346 1 72 0.003 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS11905 6913f6c8456c40be6d79f3d4c9bc72a2 242 PANTHER PTHR30136 1 236 4.9E-33 T 14-09-2016 ccrud_RS11905 6913f6c8456c40be6d79f3d4c9bc72a2 242 SUPERFAMILY SSF46785 1 59 2.91E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11905 6913f6c8456c40be6d79f3d4c9bc72a2 242 Gene3D G3DSA:3.30.450.40 69 237 2.5E-27 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS08660 f0025f19972a18883e13541ca9ce58f1 344 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 64 104 2.8E-6 T 14-09-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain ccrud_RS08660 f0025f19972a18883e13541ca9ce58f1 344 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 157 342 2.4E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08660 f0025f19972a18883e13541ca9ce58f1 344 Gene3D G3DSA:1.10.3720.10 134 339 7.4E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08660 f0025f19972a18883e13541ca9ce58f1 344 PANTHER PTHR30465:SF29 57 343 4.8E-143 T 14-09-2016 ccrud_RS08660 f0025f19972a18883e13541ca9ce58f1 344 SUPERFAMILY SSF161098 136 324 1.03E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08660 f0025f19972a18883e13541ca9ce58f1 344 PANTHER PTHR30465 57 343 4.8E-143 T 14-09-2016 ccrud_RS09295 09eefc299bcddab126901220e04d3eb9 217 TIGRFAM TIGR00257 IMPACT_YIGZ: uncharacterized protein, YigZ family 16 198 1.7E-52 T 14-09-2016 IPR015796 Impact family, bacterial/archaeal ccrud_RS09295 09eefc299bcddab126901220e04d3eb9 217 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 85 114 - T 14-09-2016 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site ccrud_RS09295 09eefc299bcddab126901220e04d3eb9 217 PANTHER PTHR16301 16 211 5.5E-50 T 14-09-2016 IPR023582 Impact family ccrud_RS09295 09eefc299bcddab126901220e04d3eb9 217 SUPERFAMILY SSF54980 142 206 4.6E-6 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS09295 09eefc299bcddab126901220e04d3eb9 217 Pfam PF09186 Domain of unknown function (DUF1949) 147 198 2.7E-9 T 14-09-2016 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal ccrud_RS09295 09eefc299bcddab126901220e04d3eb9 217 Pfam PF01205 Uncharacterized protein family UPF0029 23 130 1.1E-28 T 14-09-2016 IPR001498 Impact, N-terminal ccrud_RS09295 09eefc299bcddab126901220e04d3eb9 217 Gene3D G3DSA:3.30.70.240 144 209 5.4E-8 T 14-09-2016 IPR000640 Translation elongation factor EFG, V domain ccrud_RS09295 09eefc299bcddab126901220e04d3eb9 217 SUPERFAMILY SSF54211 13 133 2.28E-40 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS09295 09eefc299bcddab126901220e04d3eb9 217 Gene3D G3DSA:3.30.230.30 15 136 1.6E-43 T 14-09-2016 IPR001498 Impact, N-terminal ccrud_RS00750 02d51827d2723be86ca95cc5879a9fe8 215 PANTHER PTHR23416 9 195 2.7E-58 T 14-09-2016 ccrud_RS00750 02d51827d2723be86ca95cc5879a9fe8 215 Gene3D G3DSA:2.160.10.10 7 191 1.7E-52 T 14-09-2016 ccrud_RS00750 02d51827d2723be86ca95cc5879a9fe8 215 SMART SM01266 8 62 4.8E-6 T 14-09-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 ccrud_RS00750 02d51827d2723be86ca95cc5879a9fe8 215 SUPERFAMILY SSF51161 9 199 4.44E-47 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS00750 02d51827d2723be86ca95cc5879a9fe8 215 PANTHER PTHR23416:SF58 9 195 2.7E-58 T 14-09-2016 ccrud_RS00750 02d51827d2723be86ca95cc5879a9fe8 215 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 97 110 0.14 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS00750 02d51827d2723be86ca95cc5879a9fe8 215 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 134 169 8.5E-10 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS00750 02d51827d2723be86ca95cc5879a9fe8 215 Pfam PF12464 Maltose acetyltransferase 10 57 9.7E-7 T 14-09-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 PANTHER PTHR30562:SF6 19 409 8.8E-105 T 14-09-2016 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 SUPERFAMILY SSF48179 276 447 8.84E-41 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 210 419 7.0E-62 T 14-09-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 PANTHER PTHR30562 19 409 8.8E-105 T 14-09-2016 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 SUPERFAMILY SSF51735 14 274 4.72E-74 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 19 181 1.1E-28 T 14-09-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 Gene3D G3DSA:1.10.1040.10 275 450 3.7E-42 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 PRINTS PR00084 Mannitol dehydrogenase signature 211 224 1.1E-16 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 PRINTS PR00084 Mannitol dehydrogenase signature 172 185 1.1E-16 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 PRINTS PR00084 Mannitol dehydrogenase signature 20 30 1.1E-16 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 PRINTS PR00084 Mannitol dehydrogenase signature 241 256 1.1E-16 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS11160 fc56a2bc979941fe452bb1d460a8ed23 454 Gene3D G3DSA:3.40.50.720 13 274 1.3E-89 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12705 3e7294363683acf5e4bc1d74c0cdac35 240 Pfam PF13476 AAA domain 27 62 2.0E-9 T 14-09-2016 ccrud_RS12705 3e7294363683acf5e4bc1d74c0cdac35 240 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 120 189 2.4E-9 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS12705 3e7294363683acf5e4bc1d74c0cdac35 240 Gene3D G3DSA:3.40.50.300 121 191 4.1E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12705 3e7294363683acf5e4bc1d74c0cdac35 240 SMART SM00382 39 202 1.7E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12705 3e7294363683acf5e4bc1d74c0cdac35 240 Gene3D G3DSA:3.40.50.300 30 68 3.2E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12705 3e7294363683acf5e4bc1d74c0cdac35 240 SUPERFAMILY SSF52540 34 191 1.65E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00230 d6b59b4acaabf9192e35887e7df4e7a5 128 PANTHER PTHR32552 14 128 9.3E-18 T 14-09-2016 ccrud_RS00230 d6b59b4acaabf9192e35887e7df4e7a5 128 SUPERFAMILY SSF53098 54 124 6.45E-13 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS00230 d6b59b4acaabf9192e35887e7df4e7a5 128 Pfam PF00665 Integrase core domain 60 125 1.7E-12 T 14-09-2016 IPR001584 Integrase, catalytic core GO:0015074 ccrud_RS00230 d6b59b4acaabf9192e35887e7df4e7a5 128 Gene3D G3DSA:3.30.420.10 55 123 5.4E-12 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS00230 d6b59b4acaabf9192e35887e7df4e7a5 128 Pfam PF13276 HTH-like domain 1 36 1.2E-8 T 14-09-2016 IPR025948 HTH-like domain ccrud_RS03155 972758c1c6ea2e6d269c17def160b68a 548 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 14 533 1.7E-175 T 14-09-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 ccrud_RS03155 972758c1c6ea2e6d269c17def160b68a 548 Pfam PF01593 Flavin containing amine oxidoreductase 21 515 4.4E-20 T 14-09-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 ccrud_RS03155 972758c1c6ea2e6d269c17def160b68a 548 PANTHER PTHR10668 14 524 2.0E-72 T 14-09-2016 ccrud_RS03155 972758c1c6ea2e6d269c17def160b68a 548 Gene3D G3DSA:3.50.50.60 226 316 1.0E-30 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03155 972758c1c6ea2e6d269c17def160b68a 548 Gene3D G3DSA:3.50.50.60 477 527 1.0E-30 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03155 972758c1c6ea2e6d269c17def160b68a 548 Gene3D G3DSA:3.50.50.60 14 82 1.0E-30 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03155 972758c1c6ea2e6d269c17def160b68a 548 SUPERFAMILY SSF51905 487 523 2.37E-50 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03155 972758c1c6ea2e6d269c17def160b68a 548 SUPERFAMILY SSF51905 13 340 2.37E-50 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03155 972758c1c6ea2e6d269c17def160b68a 548 PANTHER PTHR10668:SF4 14 524 2.0E-72 T 14-09-2016 ccrud_RS08655 69583ccd5d50fd8680198141934b3c41 308 Gene3D G3DSA:1.10.3720.10 89 303 8.7E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08655 69583ccd5d50fd8680198141934b3c41 308 PANTHER PTHR30465:SF0 1 307 3.7E-112 T 14-09-2016 ccrud_RS08655 69583ccd5d50fd8680198141934b3c41 308 SUPERFAMILY SSF161098 91 289 1.7E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08655 69583ccd5d50fd8680198141934b3c41 308 PANTHER PTHR30465 1 307 3.7E-112 T 14-09-2016 ccrud_RS08655 69583ccd5d50fd8680198141934b3c41 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 307 1.2E-35 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 1 293 38.185 T 14-09-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 PANTHER PTHR11451 3 249 8.4E-69 T 14-09-2016 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 2 263 2.6E-85 T 14-09-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 SUPERFAMILY SSF52374 3 289 5.14E-71 T 14-09-2016 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 Gene3D G3DSA:3.40.50.620 180 229 7.2E-42 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 Gene3D G3DSA:3.40.50.620 3 65 7.2E-42 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 Gene3D G3DSA:3.90.800.10 66 172 2.0E-16 T 14-09-2016 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 253 3.7E-44 T 14-09-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 PANTHER PTHR11451:SF35 3 249 8.4E-69 T 14-09-2016 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 4 16 9.2E-16 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 178 188 9.2E-16 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 33 46 9.2E-16 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 194 202 9.2E-16 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS01245 b62438fd4d2ae3125b532f30bd549848 293 PRINTS PR00987 Glutamyl-tRNA synthetase signature 18 29 9.2E-16 T 14-09-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 127 213 2.2E-18 T 14-09-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 SUPERFAMILY SSF51011 628 730 5.68E-26 T 14-09-2016 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 103 730 42.022 T 14-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 SMART SM00642 256 610 1.7E-8 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 Pfam PF00128 Alpha amylase, catalytic domain 274 350 1.9E-10 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 PANTHER PTHR10357:SF160 51 729 0.0 T 14-09-2016 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 SUPERFAMILY SSF81296 119 227 1.22E-24 T 14-09-2016 IPR014756 Immunoglobulin E-set ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 111 724 5.5E-257 T 14-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 SUPERFAMILY SSF51445 239 625 3.07E-113 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 Gene3D G3DSA:2.60.40.10 115 227 3.4E-32 T 14-09-2016 IPR013783 Immunoglobulin-like fold ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 Gene3D G3DSA:2.60.40.10 21 108 2.1E-12 T 14-09-2016 IPR013783 Immunoglobulin-like fold ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 SUPERFAMILY SSF81296 22 115 1.08E-14 T 14-09-2016 IPR014756 Immunoglobulin E-set ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 Gene3D G3DSA:3.20.20.80 250 614 1.1E-92 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 PANTHER PTHR10357 51 729 0.0 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 632 728 6.8E-18 T 14-09-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 Gene3D G3DSA:2.60.40.1180 628 728 1.9E-27 T 14-09-2016 IPR013780 Glycosyl hydrolase, all-beta ccrud_RS05885 bea5549e00ff784a14d70159ff519ece 731 PIRSF PIRSF000463 13 731 6.2E-275 T 14-09-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 ccrud_RS03475 72b533b833dd10781bcd5057a95eb758 196 SUPERFAMILY SSF52972 1 186 7.19E-50 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like ccrud_RS03475 72b533b833dd10781bcd5057a95eb758 196 TIGRFAM TIGR00172 maf: septum formation protein Maf 2 185 6.6E-47 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 ccrud_RS03475 72b533b833dd10781bcd5057a95eb758 196 Gene3D G3DSA:3.90.950.10 2 190 5.5E-58 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like ccrud_RS03475 72b533b833dd10781bcd5057a95eb758 196 Pfam PF02545 Maf-like protein 2 186 1.1E-44 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 ccrud_RS03475 72b533b833dd10781bcd5057a95eb758 196 PIRSF PIRSF006305 1 193 3.5E-45 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 ccrud_RS03475 72b533b833dd10781bcd5057a95eb758 196 Hamap MF_00528 Septum formation protein Maf [maf]. 2 191 26.966 T 14-09-2016 IPR003697 Maf-like protein GO:0005737 ccrud_RS00340 3de14707a1a03732d8cf55640165444f 526 PANTHER PTHR10283:SF87 2 237 7.8E-144 T 14-09-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 ccrud_RS00340 3de14707a1a03732d8cf55640165444f 526 PANTHER PTHR10283:SF87 286 522 7.8E-144 T 14-09-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 ccrud_RS00340 3de14707a1a03732d8cf55640165444f 526 PANTHER PTHR10283 2 237 7.8E-144 T 14-09-2016 ccrud_RS00340 3de14707a1a03732d8cf55640165444f 526 PANTHER PTHR10283 286 522 7.8E-144 T 14-09-2016 ccrud_RS00340 3de14707a1a03732d8cf55640165444f 526 Pfam PF03600 Citrate transporter 44 470 1.3E-50 T 14-09-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 242 296 - T 14-09-2016 IPR001505 Copper centre Cu(A) GO:0005507 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 PRINTS PR01166 Cytochrome c oxidase subunit II signature 105 117 3.5E-5 T 14-09-2016 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 PRINTS PR01166 Cytochrome c oxidase subunit II signature 140 159 3.5E-5 T 14-09-2016 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 PRINTS PR01166 Cytochrome c oxidase subunit II signature 285 302 3.5E-5 T 14-09-2016 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 PANTHER PTHR22888:SF2 24 196 1.7E-60 T 14-09-2016 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 SUPERFAMILY SSF81464 41 132 4.74E-17 T 14-09-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 PANTHER PTHR22888:SF2 222 330 1.7E-60 T 14-09-2016 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 Gene3D G3DSA:2.60.40.420 219 342 9.4E-36 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 Gene3D G3DSA:2.60.40.420 140 163 9.4E-36 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 224 300 1.0E-11 T 14-09-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 PANTHER PTHR22888 24 196 1.7E-60 T 14-09-2016 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 SUPERFAMILY SSF49503 219 335 5.03E-34 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 SUPERFAMILY SSF49503 140 163 5.03E-34 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 PANTHER PTHR22888 222 330 1.7E-60 T 14-09-2016 ccrud_RS09635 0bf615bfe59874cb55fdf529f0f2d0bb 359 Gene3D G3DSA:1.10.287.90 43 134 8.0E-18 T 14-09-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 PANTHER PTHR11820 284 407 1.1E-124 T 14-09-2016 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 PANTHER PTHR11820 1 86 1.1E-124 T 14-09-2016 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 118 403 3.5E-51 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 Pfam PF09298 Fumarylacetoacetase N-terminal 17 111 9.2E-13 T 14-09-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 PANTHER PTHR11820:SF1 115 265 1.1E-124 T 14-09-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 SUPERFAMILY SSF56529 115 404 2.09E-78 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 Gene3D G3DSA:3.90.850.10 115 399 8.3E-89 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 PANTHER PTHR11820:SF1 284 407 1.1E-124 T 14-09-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 PANTHER PTHR11820:SF1 1 86 1.1E-124 T 14-09-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 Gene3D G3DSA:2.30.30.230 10 114 6.6E-17 T 14-09-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 PANTHER PTHR11820 115 265 1.1E-124 T 14-09-2016 ccrud_RS00480 50e79419fc2d56d80f620c9f3287c041 407 SUPERFAMILY SSF63433 10 108 3.01E-14 T 14-09-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 PANTHER PTHR11695 16 325 2.0E-76 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 88 2.4E-10 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 Gene3D G3DSA:3.90.180.10 1 89 2.1E-17 T 14-09-2016 IPR011032 GroES-like ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 PANTHER PTHR11695:SF590 16 325 2.0E-76 T 14-09-2016 ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 SUPERFAMILY SSF50129 1 119 1.4E-32 T 14-09-2016 IPR011032 GroES-like ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 SUPERFAMILY SSF50129 152 159 1.4E-32 T 14-09-2016 IPR011032 GroES-like ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 Pfam PF00107 Zinc-binding dehydrogenase 151 272 5.1E-22 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 SUPERFAMILY SSF51735 114 290 2.68E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 SMART SM00829 11 323 1.9E-11 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS13845 4f12baa87e9d9a90e4d559953376037d 325 Gene3D G3DSA:3.40.50.720 125 291 5.7E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 SUPERFAMILY SSF52540 7 237 4.66E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 SMART SM00382 23 231 1.2E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 SMART SM00382 379 552 1.4E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 Gene3D G3DSA:3.40.50.300 134 257 4.5E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 Gene3D G3DSA:3.40.50.300 6 97 4.5E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 Pfam PF00005 ABC transporter 374 499 1.3E-19 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 Pfam PF00005 ABC transporter 14 186 6.6E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 PANTHER PTHR19211 6 290 3.9E-116 T 14-09-2016 ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 PANTHER PTHR19211 313 528 3.9E-116 T 14-09-2016 ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 SUPERFAMILY SSF52540 375 528 8.43E-34 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 Gene3D G3DSA:3.40.50.300 374 527 1.1E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 ProSitePatterns PS00211 ABC transporters family signature. 471 485 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS06355 d1c86ab6f12bd811a5da2951a05bf1f3 557 Pfam PF12848 ABC transporter 225 276 4.9E-5 T 14-09-2016 IPR032781 ABC-transporter extension domain ccrud_RS01840 7a31d2dcd41d898daacf82e7efd2a602 600 Gene3D G3DSA:3.90.25.10 472 553 2.7E-8 T 14-09-2016 ccrud_RS01840 7a31d2dcd41d898daacf82e7efd2a602 600 Pfam PF13727 CoA-binding domain 89 251 5.9E-15 T 14-09-2016 ccrud_RS01840 7a31d2dcd41d898daacf82e7efd2a602 600 Gene3D G3DSA:3.40.50.720 151 216 2.4E-8 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01840 7a31d2dcd41d898daacf82e7efd2a602 600 SUPERFAMILY SSF51735 293 553 2.75E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01840 7a31d2dcd41d898daacf82e7efd2a602 600 Pfam PF02719 Polysaccharide biosynthesis protein 296 574 1.1E-102 T 14-09-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain ccrud_RS01840 7a31d2dcd41d898daacf82e7efd2a602 600 PANTHER PTHR10366 295 556 6.6E-92 T 14-09-2016 ccrud_RS01840 7a31d2dcd41d898daacf82e7efd2a602 600 PANTHER PTHR10366:SF256 295 556 6.6E-92 T 14-09-2016 ccrud_RS01840 7a31d2dcd41d898daacf82e7efd2a602 600 SUPERFAMILY SSF51735 155 283 1.22E-11 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01840 7a31d2dcd41d898daacf82e7efd2a602 600 Gene3D G3DSA:3.40.50.720 294 471 1.2E-42 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00580 e1f6f904ff64b805cae9d4162f5161e3 122 PANTHER PTHR34187 14 121 4.3E-15 T 14-09-2016 ccrud_RS00580 e1f6f904ff64b805cae9d4162f5161e3 122 Pfam PF02656 Domain of unknown function (DUF202) 21 87 1.5E-15 T 14-09-2016 IPR003807 Domain of unknown function DUF202 ccrud_RS00905 5fd9b721b1ad54b8dbb30b70374d0d20 386 Gene3D G3DSA:3.40.190.10 161 314 6.0E-20 T 14-09-2016 ccrud_RS00905 5fd9b721b1ad54b8dbb30b70374d0d20 386 Gene3D G3DSA:3.40.190.10 315 356 3.8E-18 T 14-09-2016 ccrud_RS00905 5fd9b721b1ad54b8dbb30b70374d0d20 386 Gene3D G3DSA:3.40.190.10 5 159 3.8E-18 T 14-09-2016 ccrud_RS00905 5fd9b721b1ad54b8dbb30b70374d0d20 386 Pfam PF13531 Bacterial extracellular solute-binding protein 65 333 8.1E-14 T 14-09-2016 ccrud_RS00905 5fd9b721b1ad54b8dbb30b70374d0d20 386 SUPERFAMILY SSF53850 66 382 2.96E-19 T 14-09-2016 ccrud_RS01055 2b2b98ca20e343e79a4150ca00c87060 310 PANTHER PTHR22916:SF29 13 298 4.3E-19 T 14-09-2016 ccrud_RS01055 2b2b98ca20e343e79a4150ca00c87060 310 SUPERFAMILY SSF53448 14 286 1.18E-31 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01055 2b2b98ca20e343e79a4150ca00c87060 310 Gene3D G3DSA:3.90.550.10 16 234 5.7E-16 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01055 2b2b98ca20e343e79a4150ca00c87060 310 Pfam PF00535 Glycosyl transferase family 2 16 124 1.4E-10 T 14-09-2016 IPR001173 Glycosyltransferase 2-like ccrud_RS01055 2b2b98ca20e343e79a4150ca00c87060 310 PANTHER PTHR22916 13 298 4.3E-19 T 14-09-2016 ccrud_RS04230 6763cc6fc8c934eed231d01fe1df6340 222 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS04230 6763cc6fc8c934eed231d01fe1df6340 222 SUPERFAMILY SSF52540 8 221 1.05E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04230 6763cc6fc8c934eed231d01fe1df6340 222 SMART SM00382 36 220 6.5E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04230 6763cc6fc8c934eed231d01fe1df6340 222 PANTHER PTHR24220 9 221 1.5E-81 T 14-09-2016 ccrud_RS04230 6763cc6fc8c934eed231d01fe1df6340 222 Gene3D G3DSA:3.40.50.300 8 221 2.8E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04230 6763cc6fc8c934eed231d01fe1df6340 222 Pfam PF00005 ABC transporter 27 172 8.5E-36 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS13930 b9ee52daf14b314ed78fbec99946c9fe 424 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 163 340 6.5E-61 T 14-09-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 ccrud_RS13930 b9ee52daf14b314ed78fbec99946c9fe 424 PANTHER PTHR33375:SF3 166 424 6.7E-94 T 14-09-2016 ccrud_RS13930 b9ee52daf14b314ed78fbec99946c9fe 424 Pfam PF02195 ParB-like nuclease domain 166 254 1.7E-26 T 14-09-2016 IPR003115 ParB/Sulfiredoxin ccrud_RS13930 b9ee52daf14b314ed78fbec99946c9fe 424 Gene3D G3DSA:3.90.1530.10 157 260 5.0E-39 T 14-09-2016 ccrud_RS13930 b9ee52daf14b314ed78fbec99946c9fe 424 PANTHER PTHR33375 166 424 6.7E-94 T 14-09-2016 ccrud_RS13930 b9ee52daf14b314ed78fbec99946c9fe 424 SMART SM00470 165 254 4.0E-35 T 14-09-2016 IPR003115 ParB/Sulfiredoxin ccrud_RS13930 b9ee52daf14b314ed78fbec99946c9fe 424 SUPERFAMILY SSF110849 158 257 2.3E-29 T 14-09-2016 IPR003115 ParB/Sulfiredoxin ccrud_RS13930 b9ee52daf14b314ed78fbec99946c9fe 424 SUPERFAMILY SSF109709 246 354 4.97E-30 T 14-09-2016 ccrud_RS08190 afe274ad4ab443dcae465a531166815a 403 PANTHER PTHR12124:SF42 37 307 5.1E-33 T 14-09-2016 ccrud_RS08190 afe274ad4ab443dcae465a531166815a 403 SUPERFAMILY SSF47819 207 312 1.83E-18 T 14-09-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 ccrud_RS08190 afe274ad4ab443dcae465a531166815a 403 SMART SM00341 222 301 4.2E-6 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 ccrud_RS08190 afe274ad4ab443dcae465a531166815a 403 Pfam PF00570 HRDC domain 226 277 8.6E-10 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 ccrud_RS08190 afe274ad4ab443dcae465a531166815a 403 Pfam PF01612 3'-5' exonuclease 27 180 1.8E-27 T 14-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 ccrud_RS08190 afe274ad4ab443dcae465a531166815a 403 Gene3D G3DSA:3.30.420.10 21 189 2.0E-7 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS08190 afe274ad4ab443dcae465a531166815a 403 SUPERFAMILY SSF53098 13 219 8.06E-47 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS08190 afe274ad4ab443dcae465a531166815a 403 SMART SM00474 13 181 2.8E-27 T 14-09-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 ccrud_RS08190 afe274ad4ab443dcae465a531166815a 403 PANTHER PTHR12124 37 307 5.1E-33 T 14-09-2016 ccrud_RS12710 94b4df7ed6d54bcf4ea7f28bb791759b 244 SUPERFAMILY SSF52540 33 206 1.32E-22 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12710 94b4df7ed6d54bcf4ea7f28bb791759b 244 Gene3D G3DSA:3.40.50.300 116 202 3.2E-12 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12710 94b4df7ed6d54bcf4ea7f28bb791759b 244 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 74 190 1.6E-9 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS12710 94b4df7ed6d54bcf4ea7f28bb791759b 244 Gene3D G3DSA:3.40.50.300 33 75 3.3E-10 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12710 94b4df7ed6d54bcf4ea7f28bb791759b 244 Pfam PF13476 AAA domain 33 71 2.2E-9 T 14-09-2016 ccrud_RS12710 94b4df7ed6d54bcf4ea7f28bb791759b 244 SMART SM00382 36 203 2.0E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 Pfam PF01479 S4 domain 15 61 2.1E-8 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 Gene3D G3DSA:3.10.290.10 16 63 9.9E-6 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 PANTHER PTHR11079:SF84 5 292 9.5E-91 T 14-09-2016 ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 12 288 5.9E-64 T 14-09-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 SUPERFAMILY SSF55120 88 291 6.56E-54 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 14-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 SUPERFAMILY SSF55174 15 65 3.34E-7 T 14-09-2016 ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 SMART SM00363 15 81 4.8E-5 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 Pfam PF00849 RNA pseudouridylate synthase 96 240 6.0E-27 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS01645 ac2bae01fdaf17b2630a47502d42bea7 292 PANTHER PTHR11079 5 292 9.5E-91 T 14-09-2016 ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 PANTHER PTHR10210:SF41 1 322 1.8E-169 T 14-09-2016 ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 12 322 44.552 T 14-09-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 Gene3D G3DSA:3.40.50.2020 167 290 4.0E-46 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 Pfam PF14572 Phosphoribosyl synthetase-associated domain 216 321 4.1E-18 T 14-09-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 PANTHER PTHR10210 1 322 1.8E-169 T 14-09-2016 ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 136 151 - T 14-09-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 13 322 1.3E-117 T 14-09-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 SMART SM01400 12 128 7.6E-69 T 14-09-2016 ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 12 128 1.3E-44 T 14-09-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 Gene3D G3DSA:3.40.50.2020 8 166 1.8E-71 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS04665 76b0dfc9ac04748ac7340c91e78f7540 325 SUPERFAMILY SSF53271 77 313 2.38E-63 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 PANTHER PTHR21342:SF1 1 155 4.1E-69 T 14-09-2016 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 1 157 32.865 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 PANTHER PTHR21342 1 155 4.1E-69 T 14-09-2016 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 2 76 2.0E-4 T 14-09-2016 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 5.0E-34 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 111 133 5.0E-34 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 1 19 5.0E-34 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 19 40 5.0E-34 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 3 155 2.5E-53 T 14-09-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 Gene3D G3DSA:3.40.50.620 1 156 7.6E-53 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 SUPERFAMILY SSF52374 2 155 1.52E-41 T 14-09-2016 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 61 4.2E-16 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ccrud_RS06490 c6a008fb6ca45171fdc4d5e0b2b0c942 159 Pfam PF01467 Cytidylyltransferase-like 5 132 1.3E-17 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ccrud_RS08170 b9e99c8135f91413cf8dfbc1d4071f3e 386 Pfam PF09594 Protein of unknown function (DUF2029) 49 273 2.0E-34 T 14-09-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 PANTHER PTHR30185:SF2 8 290 3.3E-66 T 14-09-2016 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 Gene3D G3DSA:1.10.1790.10 71 169 1.7E-22 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 SMART SM01061 7 64 5.7E-14 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 Gene3D G3DSA:1.10.1790.10 180 290 6.0E-21 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 Pfam PF00874 PRD domain 81 167 4.3E-17 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 Pfam PF00874 PRD domain 207 287 1.9E-11 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 SUPERFAMILY SSF63520 183 289 9.68E-15 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 PANTHER PTHR30185 8 290 3.3E-66 T 14-09-2016 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 SUPERFAMILY SSF50151 7 55 2.62E-10 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 Gene3D G3DSA:2.30.24.10 8 56 1.7E-13 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 Pfam PF03123 CAT RNA binding domain 8 55 4.3E-11 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 ccrud_RS12200 8e0ec6ef5514a8597b3e5b8672d0d78c 293 SUPERFAMILY SSF63520 62 171 6.02E-24 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS07735 466937fa9e25ee93877c2f73ad0697bd 312 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 306 32.198 T 14-09-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS07735 466937fa9e25ee93877c2f73ad0697bd 312 Pfam PF00551 Formyl transferase 2 184 1.1E-33 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS07735 466937fa9e25ee93877c2f73ad0697bd 312 Gene3D G3DSA:3.40.50.170 1 208 8.0E-58 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS07735 466937fa9e25ee93877c2f73ad0697bd 312 SUPERFAMILY SSF53328 1 209 9.42E-53 T 14-09-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS07735 466937fa9e25ee93877c2f73ad0697bd 312 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 304 6.8E-68 T 14-09-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS07735 466937fa9e25ee93877c2f73ad0697bd 312 SUPERFAMILY SSF50486 208 309 1.57E-26 T 14-09-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 ccrud_RS07735 466937fa9e25ee93877c2f73ad0697bd 312 Pfam PF02911 Formyl transferase, C-terminal domain 207 303 9.3E-24 T 14-09-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS07735 466937fa9e25ee93877c2f73ad0697bd 312 PANTHER PTHR11138 1 302 2.5E-90 T 14-09-2016 ccrud_RS07735 466937fa9e25ee93877c2f73ad0697bd 312 Gene3D G3DSA:3.10.25.10 211 311 1.6E-29 T 14-09-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 SMART SM00387 334 445 2.2E-31 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 443 8.3E-21 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 SUPERFAMILY SSF158472 173 218 1.44E-5 T 14-09-2016 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 429 442 2.5E-11 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 386 2.5E-11 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 423 2.5E-11 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 Gene3D G3DSA:1.10.287.130 212 290 5.5E-14 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 SUPERFAMILY SSF47384 205 293 3.34E-14 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 Gene3D G3DSA:3.30.565.10 299 444 8.1E-36 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 PANTHER PTHR24423 163 442 8.3E-58 T 14-09-2016 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 Pfam PF00672 HAMP domain 149 218 3.1E-13 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 Pfam PF00512 His Kinase A (phospho-acceptor) domain 223 293 1.1E-12 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 SUPERFAMILY SSF55874 284 442 1.11E-34 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 SMART SM00304 169 221 9.4E-9 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS04320 aa523c6b3b13009f7b4bdaa206968e83 455 SMART SM00388 222 294 1.5E-11 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS04355 721aa33099f2c238ef5982648409f878 311 PANTHER PTHR22572:SF80 14 280 4.9E-92 T 14-09-2016 ccrud_RS04355 721aa33099f2c238ef5982648409f878 311 PANTHER PTHR22572 14 280 4.9E-92 T 14-09-2016 ccrud_RS04355 721aa33099f2c238ef5982648409f878 311 SUPERFAMILY SSF53448 14 288 1.01E-53 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS04355 721aa33099f2c238ef5982648409f878 311 Gene3D G3DSA:3.90.550.10 14 285 3.9E-54 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS04355 721aa33099f2c238ef5982648409f878 311 Pfam PF00483 Nucleotidyl transferase 16 274 3.2E-28 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 ccrud_RS07570 767ca72044d3ac7edbea07347bd13f08 392 PANTHER PTHR30508 93 387 5.0E-76 T 14-09-2016 ccrud_RS07570 767ca72044d3ac7edbea07347bd13f08 392 Pfam PF01458 Uncharacterized protein family (UPF0051) 137 362 8.6E-71 T 14-09-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 ccrud_RS07570 767ca72044d3ac7edbea07347bd13f08 392 PANTHER PTHR30508:SF0 93 387 5.0E-76 T 14-09-2016 ccrud_RS07570 767ca72044d3ac7edbea07347bd13f08 392 TIGRFAM TIGR01981 sufD: FeS assembly protein SufD 102 379 3.2E-69 T 14-09-2016 IPR011542 SUF system FeS cluster assembly, SufD GO:0016226 ccrud_RS07570 767ca72044d3ac7edbea07347bd13f08 392 SUPERFAMILY SSF101960 25 387 1.09E-87 T 14-09-2016 ccrud_RS00835 c5d6f052d886d5bdeb808063c5fd5791 504 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 8 487 1.5E-203 T 14-09-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 ccrud_RS00835 c5d6f052d886d5bdeb808063c5fd5791 504 Pfam PF00171 Aldehyde dehydrogenase family 19 483 6.1E-138 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS00835 c5d6f052d886d5bdeb808063c5fd5791 504 PANTHER PTHR11699 2 490 1.0E-239 T 14-09-2016 ccrud_RS00835 c5d6f052d886d5bdeb808063c5fd5791 504 Gene3D G3DSA:3.40.309.10 264 448 2.3E-63 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS00835 c5d6f052d886d5bdeb808063c5fd5791 504 Gene3D G3DSA:3.40.605.10 6 263 8.6E-87 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS00835 c5d6f052d886d5bdeb808063c5fd5791 504 PANTHER PTHR11699:SF27 2 490 1.0E-239 T 14-09-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 ccrud_RS00835 c5d6f052d886d5bdeb808063c5fd5791 504 SUPERFAMILY SSF53720 4 489 1.96E-148 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS00835 c5d6f052d886d5bdeb808063c5fd5791 504 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 277 288 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 PANTHER PTHR11615 2 268 1.1E-215 T 14-09-2016 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 Gene3D G3DSA:3.40.228.10 199 398 2.2E-48 T 14-09-2016 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 47 756 4.8E-247 T 14-09-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 Gene3D G3DSA:3.40.50.740 124 198 3.5E-45 T 14-09-2016 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 Gene3D G3DSA:3.40.50.740 399 629 3.5E-45 T 14-09-2016 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 PANTHER PTHR11615 286 755 1.1E-215 T 14-09-2016 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 Gene3D G3DSA:2.40.40.20 641 758 1.4E-13 T 14-09-2016 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 Pfam PF01568 Molydopterin dinucleotide binding domain 644 750 1.8E-12 T 14-09-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 Pfam PF00384 Molybdopterin oxidoreductase 124 495 3.9E-31 T 14-09-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 SUPERFAMILY SSF53706 62 631 8.11E-128 T 14-09-2016 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 PANTHER PTHR11615:SF114 2 268 1.1E-215 T 14-09-2016 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 PANTHER PTHR11615:SF114 286 755 1.1E-215 T 14-09-2016 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 PIRSF PIRSF000144 9 761 0.0 T 14-09-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 ccrud_RS02715 cd3a07ceff8ae439d8d8e21a9f70f61b 762 SUPERFAMILY SSF50692 640 758 2.17E-19 T 14-09-2016 IPR009010 Aspartate decarboxylase-like domain ccrud_RS11590 6a85b94db92a0affee3002eec057dde2 245 Gene3D G3DSA:1.20.58.220 115 212 4.4E-18 T 14-09-2016 ccrud_RS11590 6a85b94db92a0affee3002eec057dde2 245 PANTHER PTHR10010:SF14 1 230 6.5E-35 T 14-09-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 ccrud_RS11590 6a85b94db92a0affee3002eec057dde2 245 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 4 212 2.8E-42 T 14-09-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 ccrud_RS11590 6a85b94db92a0affee3002eec057dde2 245 Gene3D G3DSA:1.20.58.220 1 106 5.7E-18 T 14-09-2016 ccrud_RS11590 6a85b94db92a0affee3002eec057dde2 245 SUPERFAMILY SSF109755 2 222 1.67E-47 T 14-09-2016 ccrud_RS11590 6a85b94db92a0affee3002eec057dde2 245 PANTHER PTHR10010 1 230 6.5E-35 T 14-09-2016 ccrud_RS11590 6a85b94db92a0affee3002eec057dde2 245 Pfam PF01895 PhoU domain 19 103 4.2E-8 T 14-09-2016 IPR026022 PhoU domain ccrud_RS11590 6a85b94db92a0affee3002eec057dde2 245 Pfam PF01895 PhoU domain 122 203 2.5E-12 T 14-09-2016 IPR026022 PhoU domain ccrud_RS11590 6a85b94db92a0affee3002eec057dde2 245 PIRSF PIRSF003107 1 217 1.9E-41 T 14-09-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 Gene3D G3DSA:3.30.470.20 203 398 1.8E-68 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 SUPERFAMILY SSF52440 6 116 4.46E-32 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 SUPERFAMILY SSF51246 329 400 1.88E-16 T 14-09-2016 IPR011054 Rudiment single hybrid motif ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 Pfam PF02222 ATP-grasp domain 127 304 2.0E-52 T 14-09-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 PANTHER PTHR11609 1 398 4.7E-193 T 14-09-2016 ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 17 401 5.5E-175 T 14-09-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 Gene3D G3DSA:3.30.1490.20 127 202 9.0E-27 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 Pfam PF01370 NAD dependent epimerase/dehydratase family 22 84 1.6E-4 T 14-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 11 401 52.112 T 14-09-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 PANTHER PTHR11609:SF7 1 398 4.7E-193 T 14-09-2016 ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 Gene3D G3DSA:3.40.50.20 7 124 3.6E-37 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS12470 d63027104b41fd621a8190dfa8bbc652 405 SUPERFAMILY SSF56059 117 323 1.54E-58 T 14-09-2016 ccrud_RS03520 6bc579043d8d73ef53e96b6ee0aeafa4 165 PIRSF PIRSF001338 1 163 5.6E-69 T 14-09-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 ccrud_RS03520 6bc579043d8d73ef53e96b6ee0aeafa4 165 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 156 32.726 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS03520 6bc579043d8d73ef53e96b6ee0aeafa4 165 Pfam PF00731 AIR carboxylase 5 150 1.4E-64 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS03520 6bc579043d8d73ef53e96b6ee0aeafa4 165 PANTHER PTHR11609:SF5 3 161 8.4E-90 T 14-09-2016 ccrud_RS03520 6bc579043d8d73ef53e96b6ee0aeafa4 165 PANTHER PTHR11609 3 161 8.4E-90 T 14-09-2016 ccrud_RS03520 6bc579043d8d73ef53e96b6ee0aeafa4 165 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 159 1.9E-67 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS03520 6bc579043d8d73ef53e96b6ee0aeafa4 165 SMART SM01001 3 152 3.7E-96 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS03520 6bc579043d8d73ef53e96b6ee0aeafa4 165 SUPERFAMILY SSF52255 3 162 2.35E-66 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS03520 6bc579043d8d73ef53e96b6ee0aeafa4 165 Gene3D G3DSA:3.40.50.7700 3 161 7.5E-74 T 14-09-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 ccrud_RS07900 3719d237938c4d12457281b53f0e809f 182 PANTHER PTHR33317 16 166 2.6E-34 T 14-09-2016 ccrud_RS07900 3719d237938c4d12457281b53f0e809f 182 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 19 158 3.1E-26 T 14-09-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 ccrud_RS07900 3719d237938c4d12457281b53f0e809f 182 SUPERFAMILY SSF53098 16 160 1.67E-31 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS07900 3719d237938c4d12457281b53f0e809f 182 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 16 161 22.884 T 14-09-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 ccrud_RS07900 3719d237938c4d12457281b53f0e809f 182 PANTHER PTHR33317:SF1 16 166 2.6E-34 T 14-09-2016 ccrud_RS07900 3719d237938c4d12457281b53f0e809f 182 Gene3D G3DSA:3.30.420.140 16 164 1.2E-43 T 14-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 ccrud_RS07900 3719d237938c4d12457281b53f0e809f 182 SMART SM00732 16 126 7.3E-32 T 14-09-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 ccrud_RS07900 3719d237938c4d12457281b53f0e809f 182 Pfam PF03652 Holliday junction resolvase 17 158 4.6E-39 T 14-09-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 ccrud_RS13655 6f3930be8d7631f0b7b1fffa9a16611c 258 Gene3D G3DSA:1.10.10.10 16 80 3.7E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13655 6f3930be8d7631f0b7b1fffa9a16611c 258 SUPERFAMILY SSF55781 72 249 2.09E-31 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS13655 6f3930be8d7631f0b7b1fffa9a16611c 258 SUPERFAMILY SSF46785 17 81 1.05E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13655 6f3930be8d7631f0b7b1fffa9a16611c 258 Pfam PF01614 Bacterial transcriptional regulator 136 234 2.1E-8 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal ccrud_RS13655 6f3930be8d7631f0b7b1fffa9a16611c 258 PANTHER PTHR30136 14 258 1.6E-31 T 14-09-2016 ccrud_RS13655 6f3930be8d7631f0b7b1fffa9a16611c 258 Gene3D G3DSA:3.30.450.40 90 249 1.2E-32 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS06505 1b696241dd6a8944ef843417aab47a52 254 SUPERFAMILY SSF52540 5 249 8.79E-78 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06505 1b696241dd6a8944ef843417aab47a52 254 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS06505 1b696241dd6a8944ef843417aab47a52 254 SMART SM00382 30 227 1.1E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06505 1b696241dd6a8944ef843417aab47a52 254 Gene3D G3DSA:3.40.50.300 5 251 4.0E-82 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06505 1b696241dd6a8944ef843417aab47a52 254 PANTHER PTHR24220:SF447 7 254 1.4E-129 T 14-09-2016 ccrud_RS06505 1b696241dd6a8944ef843417aab47a52 254 PANTHER PTHR24220 7 254 1.4E-129 T 14-09-2016 ccrud_RS06505 1b696241dd6a8944ef843417aab47a52 254 PIRSF PIRSF039085 2 254 1.5E-120 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ccrud_RS06505 1b696241dd6a8944ef843417aab47a52 254 Pfam PF00005 ABC transporter 21 179 9.2E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS13495 010c75c0dab4bd08b2aa919b36152cc7 222 Pfam PF00436 Single-strand binding protein family 7 108 9.8E-30 T 14-09-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 ccrud_RS13495 010c75c0dab4bd08b2aa919b36152cc7 222 PANTHER PTHR10302 166 222 1.3E-26 T 14-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 ccrud_RS13495 010c75c0dab4bd08b2aa919b36152cc7 222 PANTHER PTHR10302 8 119 1.3E-26 T 14-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 ccrud_RS13495 010c75c0dab4bd08b2aa919b36152cc7 222 SUPERFAMILY SSF50249 7 167 9.14E-44 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS13495 010c75c0dab4bd08b2aa919b36152cc7 222 Hamap MF_00984 Single-stranded DNA-binding protein. 5 114 31.294 T 14-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 ccrud_RS13495 010c75c0dab4bd08b2aa919b36152cc7 222 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 5 222 2.1E-30 T 14-09-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 ccrud_RS13495 010c75c0dab4bd08b2aa919b36152cc7 222 Gene3D G3DSA:2.40.50.140 5 118 1.5E-41 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 PANTHER PTHR11596:SF5 51 89 7.3E-65 T 14-09-2016 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 SUPERFAMILY SSF53649 137 449 7.26E-86 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 SUPERFAMILY SSF53649 48 98 7.26E-86 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 PANTHER PTHR11596 107 396 7.3E-65 T 14-09-2016 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 PANTHER PTHR11596 51 89 7.3E-65 T 14-09-2016 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 Gene3D G3DSA:3.40.720.10 31 464 6.4E-101 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 PRINTS PR00113 Alkaline phosphatase signature 220 230 2.5E-18 T 14-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 PRINTS PR00113 Alkaline phosphatase signature 54 74 2.5E-18 T 14-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 PRINTS PR00113 Alkaline phosphatase signature 315 344 2.5E-18 T 14-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 ProSitePatterns PS00123 Alkaline phosphatase active site. 139 147 - T 14-09-2016 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 Pfam PF00245 Alkaline phosphatase 130 397 2.9E-48 T 14-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 PANTHER PTHR11596:SF5 107 396 7.3E-65 T 14-09-2016 ccrud_RS11045 2e9c5397dd5df9b39b7d6f2af6279c88 470 SMART SM00098 55 470 1.3E-12 T 14-09-2016 IPR001952 Alkaline phosphatase GO:0008152|GO:0016791 KEGG: 00627+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 ccrud_RS02800 d975520276e0a374a6bc52edccc88266 106 Gene3D G3DSA:3.10.20.30 3 104 6.4E-33 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS02800 d975520276e0a374a6bc52edccc88266 106 ProSitePatterns PS00814 Adrenodoxin family, iron-sulfur binding region signature. 40 50 - T 14-09-2016 IPR018298 Adrenodoxin, iron-sulphur binding site GO:0009055|GO:0051537 ccrud_RS02800 d975520276e0a374a6bc52edccc88266 106 SUPERFAMILY SSF54292 3 100 2.5E-29 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS02800 d975520276e0a374a6bc52edccc88266 106 PRINTS PR00355 Adrenodoxin signature 59 73 2.5E-6 T 14-09-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 ccrud_RS02800 d975520276e0a374a6bc52edccc88266 106 PRINTS PR00355 Adrenodoxin signature 40 50 2.5E-6 T 14-09-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 ccrud_RS02800 d975520276e0a374a6bc52edccc88266 106 PRINTS PR00355 Adrenodoxin signature 83 91 2.5E-6 T 14-09-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 ccrud_RS02800 d975520276e0a374a6bc52edccc88266 106 PANTHER PTHR23426 3 96 1.1E-26 T 14-09-2016 ccrud_RS02800 d975520276e0a374a6bc52edccc88266 106 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 92 1.8E-14 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS10310 38a6eb3e4d64c607eaba5d543d3ff896 451 Pfam PF07287 Protein of unknown function (DUF1446) 8 353 9.4E-118 T 14-09-2016 IPR010839 Protein of unknown function DUF1446 ccrud_RS10310 38a6eb3e4d64c607eaba5d543d3ff896 451 PANTHER PTHR13943:SF48 40 116 5.6E-97 T 14-09-2016 ccrud_RS10310 38a6eb3e4d64c607eaba5d543d3ff896 451 PANTHER PTHR13943 139 445 5.6E-97 T 14-09-2016 ccrud_RS10310 38a6eb3e4d64c607eaba5d543d3ff896 451 PANTHER PTHR13943 40 116 5.6E-97 T 14-09-2016 ccrud_RS10310 38a6eb3e4d64c607eaba5d543d3ff896 451 PANTHER PTHR13943:SF48 139 445 5.6E-97 T 14-09-2016 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 7 476 4.6E-197 T 14-09-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 SMART SM01230 105 386 3.9E-144 T 14-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 ProSitePatterns PS00180 Glutamine synthetase signature 1. 53 71 - T 14-09-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 Gene3D G3DSA:3.30.590.10 109 456 3.6E-135 T 14-09-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 SUPERFAMILY SSF55931 106 477 9.71E-138 T 14-09-2016 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 PANTHER PTHR20852 7 141 1.0E-236 T 14-09-2016 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 PANTHER PTHR20852:SF15 159 477 1.0E-236 T 14-09-2016 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 264 279 - T 14-09-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 17 98 2.1E-27 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 Pfam PF00120 Glutamine synthetase, catalytic domain 106 474 1.0E-134 T 14-09-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 SUPERFAMILY SSF54368 5 102 8.37E-33 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 PANTHER PTHR20852 159 477 1.0E-236 T 14-09-2016 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 Gene3D G3DSA:3.10.20.70 5 108 4.3E-37 T 14-09-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 ccrud_RS09760 75a5644f8bbeb549b7374fbf7143ac17 477 PANTHER PTHR20852:SF15 7 141 1.0E-236 T 14-09-2016 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 Pfam PF00149 Calcineurin-like phosphoesterase 36 234 2.2E-8 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 Gene3D G3DSA:3.60.21.10 29 301 4.1E-59 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 PANTHER PTHR11575:SF7 1 497 1.3E-85 T 14-09-2016 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 Gene3D G3DSA:3.90.780.10 332 513 6.4E-40 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 SUPERFAMILY SSF56300 29 279 5.94E-55 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 SUPERFAMILY SSF55816 310 506 3.53E-41 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 Pfam PF02872 5'-nucleotidase, C-terminal domain 334 477 1.9E-36 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 PANTHER PTHR11575 1 497 1.3E-85 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 PRINTS PR01607 Apyrase family signature 33 51 6.0E-14 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 PRINTS PR01607 Apyrase family signature 377 400 6.0E-14 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 PRINTS PR01607 Apyrase family signature 451 470 6.0E-14 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 PRINTS PR01607 Apyrase family signature 201 218 6.0E-14 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS00095 f156633d89bb1f9184f60e78cdba1b52 660 PRINTS PR01607 Apyrase family signature 244 264 6.0E-14 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS00595 ee792fc509f8e5e58d622f878f111783 343 SUPERFAMILY SSF51679 5 325 1.83E-70 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS00595 ee792fc509f8e5e58d622f878f111783 343 Pfam PF00296 Luciferase-like monooxygenase 19 297 3.2E-39 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS00595 ee792fc509f8e5e58d622f878f111783 343 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 7 326 1.7E-110 T 14-09-2016 IPR019949 Luciferase family oxidoreductase, group 1 ccrud_RS00595 ee792fc509f8e5e58d622f878f111783 343 Gene3D G3DSA:3.20.20.30 4 325 3.5E-75 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS00595 ee792fc509f8e5e58d622f878f111783 343 PANTHER PTHR30137 2 326 1.5E-99 T 14-09-2016 ccrud_RS00595 ee792fc509f8e5e58d622f878f111783 343 PANTHER PTHR30137:SF2 2 326 1.5E-99 T 14-09-2016 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 1 153 8.7E-34 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 Gene3D G3DSA:3.30.420.10 1 155 4.9E-53 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 SUPERFAMILY SSF53098 1 156 1.48E-41 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 81 97 2.1E-34 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 105 124 2.1E-34 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 137 149 2.1E-34 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 1 14 2.1E-34 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 59 75 2.1E-34 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 1 149 1.0E-51 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 PANTHER PTHR30194 1 168 7.3E-60 T 14-09-2016 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 111 146 - T 14-09-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 ccrud_RS08035 da1390085ea20d5e3966bb8cfcaf9ffc 210 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 1 152 43.421 T 14-09-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 PIRSF PIRSF001415 3 339 1.5E-142 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 Gene3D G3DSA:3.20.20.70 8 337 9.2E-141 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 310 329 8.6E-58 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 131 145 8.6E-58 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 204 223 8.6E-58 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 255 271 8.6E-58 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 166 185 8.6E-58 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 280 295 8.6E-58 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 Pfam PF00490 Delta-aminolevulinic acid dehydratase 13 334 2.4E-138 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 SMART SM01004 10 336 5.1E-215 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 SUPERFAMILY SSF51569 9 337 4.54E-129 T 14-09-2016 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 255 267 - T 14-09-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS02245 7c63cf3ec0b36a1dd927c8097a4894bc 339 PANTHER PTHR11458 12 334 2.6E-171 T 14-09-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 ccrud_RS03510 3f63026f62dc387b3e7f21493993e135 628 PANTHER PTHR30540 20 563 7.3E-189 T 14-09-2016 ccrud_RS03510 3f63026f62dc387b3e7f21493993e135 628 Pfam PF02705 K+ potassium transporter 24 554 3.5E-195 T 14-09-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 ccrud_RS03510 3f63026f62dc387b3e7f21493993e135 628 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 15 628 30.347 T 14-09-2016 IPR023051 Potassium uptake protein, low affinity, Kup ccrud_RS03510 3f63026f62dc387b3e7f21493993e135 628 PANTHER PTHR30540:SF7 20 563 7.3E-189 T 14-09-2016 ccrud_RS03985 bc135ce9eac52662eb834ce9f27f390d 371 Pfam PF01032 FecCD transport family 57 367 4.9E-51 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03985 bc135ce9eac52662eb834ce9f27f390d 371 PANTHER PTHR30472:SF19 37 371 5.3E-127 T 14-09-2016 ccrud_RS03985 bc135ce9eac52662eb834ce9f27f390d 371 Gene3D G3DSA:1.10.3470.10 50 369 5.0E-55 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS03985 bc135ce9eac52662eb834ce9f27f390d 371 PANTHER PTHR30472 37 371 5.3E-127 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03985 bc135ce9eac52662eb834ce9f27f390d 371 SUPERFAMILY SSF81345 49 367 7.85E-58 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS00655 6c3492d604b5bf591aea331772080776 190 TIGRFAM TIGR00567 3mg: DNA-3-methyladenine glycosylase 3 182 3.6E-52 T 14-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 ccrud_RS00655 6c3492d604b5bf591aea331772080776 190 Gene3D G3DSA:3.10.300.10 7 185 2.5E-59 T 14-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 ccrud_RS00655 6c3492d604b5bf591aea331772080776 190 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 7 179 1.2E-60 T 14-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 ccrud_RS00655 6c3492d604b5bf591aea331772080776 190 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 2 182 27.451 T 14-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 ccrud_RS00655 6c3492d604b5bf591aea331772080776 190 SUPERFAMILY SSF50486 6 186 2.51E-56 T 14-09-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 ccrud_RS00655 6c3492d604b5bf591aea331772080776 190 PANTHER PTHR10429:SF0 6 185 4.9E-54 T 14-09-2016 ccrud_RS00655 6c3492d604b5bf591aea331772080776 190 PANTHER PTHR10429 6 185 4.9E-54 T 14-09-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 SUPERFAMILY SSF50993 5 435 6.02E-86 T 14-09-2016 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 Gene3D G3DSA:2.130.10.120 75 430 2.9E-108 T 14-09-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 525 544 4.0E-52 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 497 521 4.0E-52 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 632 654 4.0E-52 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 555 575 4.0E-52 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 471 489 4.0E-52 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 614 629 4.0E-52 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 16 428 1.4E-89 T 14-09-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 PANTHER PTHR11757:SF3 8 700 5.9E-255 T 14-09-2016 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 Gene3D G3DSA:3.40.50.1820 439 690 5.3E-29 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 PANTHER PTHR11757 8 700 5.9E-255 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 Pfam PF00326 Prolyl oligopeptidase family 487 700 3.3E-61 T 14-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 ccrud_RS11710 fa723dcb01bba104cd9a0eab186880a8 706 SUPERFAMILY SSF53474 442 680 3.81E-38 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS10280 0b7624005610f56ed75c5ec7f2b12865 497 PIRSF PIRSF002741 4 489 3.0E-77 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ccrud_RS10280 0b7624005610f56ed75c5ec7f2b12865 497 PANTHER PTHR30290:SF14 11 486 1.1E-94 T 14-09-2016 ccrud_RS10280 0b7624005610f56ed75c5ec7f2b12865 497 Gene3D G3DSA:3.90.76.10 49 190 2.1E-41 T 14-09-2016 ccrud_RS10280 0b7624005610f56ed75c5ec7f2b12865 497 PANTHER PTHR30290 11 486 1.1E-94 T 14-09-2016 ccrud_RS10280 0b7624005610f56ed75c5ec7f2b12865 497 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 82 407 2.3E-79 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain ccrud_RS10280 0b7624005610f56ed75c5ec7f2b12865 497 Gene3D G3DSA:3.10.105.10 289 460 1.9E-31 T 14-09-2016 ccrud_RS10280 0b7624005610f56ed75c5ec7f2b12865 497 SUPERFAMILY SSF53850 37 485 2.71E-107 T 14-09-2016 ccrud_RS10280 0b7624005610f56ed75c5ec7f2b12865 497 Gene3D G3DSA:3.40.190.10 191 288 1.0E-32 T 14-09-2016 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 ProSitePatterns PS00211 ABC transporters family signature. 458 472 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 SUPERFAMILY SSF52540 18 268 1.67E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 SUPERFAMILY SSF52540 308 557 7.31E-74 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 PANTHER PTHR24220:SF518 20 275 1.0E-155 T 14-09-2016 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 248 280 3.1E-7 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 537 565 8.0E-4 T 14-09-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 Gene3D G3DSA:3.40.50.300 307 559 1.7E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 Gene3D G3DSA:3.40.50.300 17 270 1.8E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 SMART SM00382 342 535 3.9E-19 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 SMART SM00382 47 246 3.8E-19 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 PANTHER PTHR24220:SF518 301 443 1.0E-155 T 14-09-2016 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 Pfam PF00005 ABC transporter 334 485 9.7E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 Pfam PF00005 ABC transporter 40 197 1.4E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 PANTHER PTHR24220 301 443 1.0E-155 T 14-09-2016 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 PANTHER PTHR24220 20 275 1.0E-155 T 14-09-2016 ccrud_RS08665 8881ab66fb93ec014f979daa26e47def 575 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PANTHER PTHR24322:SF333 5 24 1.5E-52 T 14-09-2016 ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PANTHER PTHR24322:SF333 150 181 1.5E-52 T 14-09-2016 ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 Gene3D G3DSA:3.40.50.720 3 219 1.3E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PANTHER PTHR24322 41 133 1.5E-52 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 SUPERFAMILY SSF51735 3 243 2.31E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PANTHER PTHR24322:SF333 41 133 1.5E-52 T 14-09-2016 ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 Pfam PF00106 short chain dehydrogenase 3 189 2.9E-25 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.4E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 1.4E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 2 19 1.4E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 1.4E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 1.4E-7 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PANTHER PTHR24322 5 24 1.5E-52 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07215 418b4c9e19210832b4319ba4672189c8 246 PANTHER PTHR24322 150 181 1.5E-52 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 PANTHER PTHR11717:SF14 146 196 8.9E-25 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 PANTHER PTHR11717:SF14 7 100 8.9E-25 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 46 62 1.0E-9 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 7 24 1.0E-9 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 81 96 1.0E-9 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 7 113 1.4E-24 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 SUPERFAMILY SSF52788 164 194 4.97E-31 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 SUPERFAMILY SSF52788 3 122 4.97E-31 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 PANTHER PTHR11717 146 196 8.9E-25 T 14-09-2016 ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 PANTHER PTHR11717 7 100 8.9E-25 T 14-09-2016 ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 SMART SM00226 5 127 8.2E-14 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 Gene3D G3DSA:3.40.50.270 161 197 5.1E-36 T 14-09-2016 ccrud_RS01830 b515be189a90db8052e8c8cd4a7a98b7 201 Gene3D G3DSA:3.40.50.270 3 114 5.1E-36 T 14-09-2016 ccrud_RS09495 a8100444693359e2695f0d181247e031 338 PIRSF PIRSF004486 7 330 5.2E-87 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS09495 a8100444693359e2695f0d181247e031 338 PANTHER PTHR11265 24 331 2.1E-108 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS09495 a8100444693359e2695f0d181247e031 338 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 12 329 34.377 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS09495 a8100444693359e2695f0d181247e031 338 Gene3D G3DSA:1.10.150.170 132 236 6.2E-35 T 14-09-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS09495 a8100444693359e2695f0d181247e031 338 Gene3D G3DSA:3.40.50.150 237 329 5.1E-39 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS09495 a8100444693359e2695f0d181247e031 338 Gene3D G3DSA:3.40.50.150 12 129 5.1E-39 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS09495 a8100444693359e2695f0d181247e031 338 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 23 328 3.5E-80 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS09495 a8100444693359e2695f0d181247e031 338 SUPERFAMILY SSF53335 234 329 4.14E-32 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS09495 a8100444693359e2695f0d181247e031 338 SUPERFAMILY SSF53335 12 132 4.14E-32 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS09495 a8100444693359e2695f0d181247e031 338 Pfam PF01795 MraW methylase family 11 329 5.1E-101 T 14-09-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS09495 a8100444693359e2695f0d181247e031 338 PANTHER PTHR11265:SF0 24 331 2.1E-108 T 14-09-2016 ccrud_RS09495 a8100444693359e2695f0d181247e031 338 SUPERFAMILY SSF81799 133 234 1.05E-32 T 14-09-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 SUPERFAMILY SSF55979 7 123 2.42E-20 T 14-09-2016 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 7 123 4.9E-29 T 14-09-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 7 392 2.8E-85 T 14-09-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 Pfam PF02767 DNA polymerase III beta subunit, central domain 132 255 3.4E-29 T 14-09-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 259 362 4.9E-27 T 14-09-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 Gene3D G3DSA:3.10.150.10 4 125 1.8E-27 T 14-09-2016 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 Gene3D G3DSA:3.10.150.10 130 257 3.9E-27 T 14-09-2016 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 SUPERFAMILY SSF55979 132 257 1.52E-17 T 14-09-2016 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 Gene3D G3DSA:3.10.150.10 261 393 1.5E-36 T 14-09-2016 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 PANTHER PTHR30478 8 366 4.7E-100 T 14-09-2016 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 PANTHER PTHR30478 382 394 4.7E-100 T 14-09-2016 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 SMART SM00480 22 376 4.8E-99 T 14-09-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 PIRSF PIRSF000804 6 393 9.0E-82 T 14-09-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS00015 986be872e9bbe7be5b2bf9d66a5d5cc5 394 SUPERFAMILY SSF55979 259 392 4.35E-26 T 14-09-2016 ccrud_RS03550 ed3aa011917635b592b4cc5bcc933f9e 185 Gene3D G3DSA:3.40.430.10 2 176 3.2E-28 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS03550 ed3aa011917635b592b4cc5bcc933f9e 185 SUPERFAMILY SSF53597 1 175 8.51E-27 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS03550 ed3aa011917635b592b4cc5bcc933f9e 185 Pfam PF01872 RibD C-terminal domain 3 175 2.8E-12 T 14-09-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 ccrud_RS03815 1ac21182009af8667265e40c0e004dd5 350 Gene3D G3DSA:2.30.42.10 144 217 2.8E-13 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS03815 1ac21182009af8667265e40c0e004dd5 350 PANTHER PTHR10046:SF48 222 343 6.0E-42 T 14-09-2016 ccrud_RS03815 1ac21182009af8667265e40c0e004dd5 350 Pfam PF13180 PDZ domain 145 210 2.3E-8 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS03815 1ac21182009af8667265e40c0e004dd5 350 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 245 322 7.0E-7 T 14-09-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 ccrud_RS03815 1ac21182009af8667265e40c0e004dd5 350 SUPERFAMILY SSF50156 143 246 8.9E-15 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS03815 1ac21182009af8667265e40c0e004dd5 350 Gene3D G3DSA:3.30.230.10 241 336 1.0E-19 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS03815 1ac21182009af8667265e40c0e004dd5 350 SUPERFAMILY SSF54211 239 337 7.59E-18 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS03815 1ac21182009af8667265e40c0e004dd5 350 PANTHER PTHR10046 222 343 6.0E-42 T 14-09-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 ccrud_RS05565 0bf9e2e76e7550657eb6753b8d9c262c 468 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 14-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 ccrud_RS05565 0bf9e2e76e7550657eb6753b8d9c262c 468 PANTHER PTHR11785:SF351 12 446 3.0E-156 T 14-09-2016 ccrud_RS05565 0bf9e2e76e7550657eb6753b8d9c262c 468 PANTHER PTHR11785 12 446 3.0E-156 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 ccrud_RS05565 0bf9e2e76e7550657eb6753b8d9c262c 468 Pfam PF00324 Amino acid permease 18 445 1.8E-99 T 14-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 ccrud_RS05565 0bf9e2e76e7550657eb6753b8d9c262c 468 PIRSF PIRSF006060 7 466 2.1E-59 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 57 595 2.1E-277 T 14-09-2016 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 Gene3D G3DSA:3.20.20.80 60 157 1.8E-106 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 Gene3D G3DSA:3.20.20.80 494 508 1.8E-106 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 Gene3D G3DSA:3.20.20.80 233 461 1.8E-106 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 Pfam PF16657 Maltogenic Amylase, C-terminal domain 515 592 2.2E-23 T 14-09-2016 IPR032091 Maltogenic Amylase, C-terminal ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 SMART SM00642 66 467 2.3E-102 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 Pfam PF00128 Alpha amylase, catalytic domain 81 436 5.5E-76 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 Gene3D G3DSA:2.60.40.1180 515 594 3.7E-16 T 14-09-2016 IPR013780 Glycosyl hydrolase, all-beta ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 PANTHER PTHR10357 491 601 3.5E-258 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 PANTHER PTHR10357 48 452 3.5E-258 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 SUPERFAMILY SSF51011 519 595 3.96E-16 T 14-09-2016 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 SUPERFAMILY SSF51445 405 512 4.42E-123 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 SUPERFAMILY SSF51445 56 378 4.42E-123 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 PANTHER PTHR10357:SF164 491 601 3.5E-258 T 14-09-2016 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 PANTHER PTHR10357:SF164 48 452 3.5E-258 T 14-09-2016 ccrud_RS10170 0844cb34810459afa0322dbcf232f35f 604 Gene3D G3DSA:3.90.400.10 158 225 1.4E-22 T 14-09-2016 ccrud_RS10400 e84e90b6dc792f6d1eca2456edee3c33 351 PIRSF PIRSF006470 12 343 1.5E-68 T 14-09-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 ccrud_RS10400 e84e90b6dc792f6d1eca2456edee3c33 351 PANTHER PTHR33376:SF2 1 346 5.1E-69 T 14-09-2016 ccrud_RS10400 e84e90b6dc792f6d1eca2456edee3c33 351 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 45 299 2.8E-52 T 14-09-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 ccrud_RS10400 e84e90b6dc792f6d1eca2456edee3c33 351 PANTHER PTHR33376 1 346 5.1E-69 T 14-09-2016 ccrud_RS10400 e84e90b6dc792f6d1eca2456edee3c33 351 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 48 324 7.8E-61 T 14-09-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 ccrud_RS12790 4a170bba7a956216f354d6efa0f09d39 330 SMART SM00244 98 262 1.6E-9 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS12790 4a170bba7a956216f354d6efa0f09d39 330 PANTHER PTHR10264:SF46 80 267 2.5E-56 T 14-09-2016 ccrud_RS12790 4a170bba7a956216f354d6efa0f09d39 330 PANTHER PTHR10264:SF46 290 305 2.5E-56 T 14-09-2016 ccrud_RS12790 4a170bba7a956216f354d6efa0f09d39 330 Pfam PF01145 SPFH domain / Band 7 family 102 275 1.1E-25 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS12790 4a170bba7a956216f354d6efa0f09d39 330 PANTHER PTHR10264 80 267 2.5E-56 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS12790 4a170bba7a956216f354d6efa0f09d39 330 PANTHER PTHR10264 290 305 2.5E-56 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS12790 4a170bba7a956216f354d6efa0f09d39 330 SUPERFAMILY SSF117892 130 265 1.05E-13 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS08100 64ad8e3a68a8de3e6aed6e997b8d737b 186 SUPERFAMILY SSF81296 23 120 3.57E-16 T 14-09-2016 IPR014756 Immunoglobulin E-set ccrud_RS08100 64ad8e3a68a8de3e6aed6e997b8d737b 186 Gene3D G3DSA:2.60.40.1220 23 120 1.9E-13 T 14-09-2016 IPR014755 Copper resistance protein CopC/internalin, immunoglobulin-like ccrud_RS08100 64ad8e3a68a8de3e6aed6e997b8d737b 186 Pfam PF04234 CopC domain 24 120 7.6E-17 T 14-09-2016 IPR007348 CopC domain GO:0005507|GO:0042597|GO:0046688 ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 SUPERFAMILY SSF51206 3 137 2.36E-24 T 14-09-2016 IPR018490 Cyclic nucleotide-binding-like ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 Pfam PF13545 Crp-like helix-turn-helix domain 143 215 3.0E-14 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 SUPERFAMILY SSF46785 141 218 3.16E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 169 185 1.4E-6 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 185 200 1.4E-6 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 Gene3D G3DSA:1.10.10.10 141 218 1.4E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 PANTHER PTHR24567 6 222 2.9E-36 T 14-09-2016 ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 Pfam PF00027 Cyclic nucleotide-binding domain 26 111 4.8E-11 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 SMART SM00419 163 211 4.2E-7 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 Gene3D G3DSA:2.60.120.10 5 127 1.7E-18 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS05670 67afe18d341d21dbdb821bf2c52ccfc1 222 SMART SM00100 6 126 8.4E-11 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain ccrud_RS07025 d5c607541b1d8fd4fce0fd6e1d7bd4bf 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 66 8.0E-12 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS07025 d5c607541b1d8fd4fce0fd6e1d7bd4bf 199 PANTHER PTHR30055 5 170 1.3E-18 T 14-09-2016 ccrud_RS07025 d5c607541b1d8fd4fce0fd6e1d7bd4bf 199 Gene3D G3DSA:1.10.357.10 7 187 1.3E-20 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS07025 d5c607541b1d8fd4fce0fd6e1d7bd4bf 199 SUPERFAMILY SSF46689 8 92 3.89E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS07025 d5c607541b1d8fd4fce0fd6e1d7bd4bf 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 4.7E-6 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS07025 d5c607541b1d8fd4fce0fd6e1d7bd4bf 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 4.7E-6 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 SUPERFAMILY SSF52540 3 142 4.95E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 Pfam PF00005 ABC transporter 3 113 1.4E-7 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 Pfam PF00005 ABC transporter 201 231 1.0E-5 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 SUPERFAMILY SSF52540 194 336 1.05E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 Gene3D G3DSA:3.40.50.300 3 142 2.4E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 PANTHER PTHR24220 45 228 2.9E-21 T 14-09-2016 ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 PANTHER PTHR24220:SF66 45 228 2.9E-21 T 14-09-2016 ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 Gene3D G3DSA:3.40.50.300 200 332 3.3E-16 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 SMART SM00382 2 177 14.0 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12745 1ebf8496b2ba0163184d6f412ce9ecb8 342 SMART SM00382 207 342 0.0071 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 Pfam PF01019 Gamma-glutamyltranspeptidase 111 649 4.9E-150 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PANTHER PTHR11686 75 653 3.2E-214 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PANTHER PTHR11686:SF27 75 653 3.2E-214 T 14-09-2016 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 98 646 9.2E-113 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 317 333 6.9E-55 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 118 143 6.9E-55 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 347 366 6.9E-55 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 484 502 6.9E-55 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 551 568 6.9E-55 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 213 232 6.9E-55 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 521 536 6.9E-55 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 462 480 6.9E-55 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 195 213 6.9E-55 T 14-09-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 ccrud_RS04735 4479aa18557f7ec40f8e1c2b31cf2e5b 654 SUPERFAMILY SSF56235 88 653 3.86E-149 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal ccrud_RS12020 0608d38e751cacc094f3212d7abea0a1 366 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 39 152 3.3E-26 T 14-09-2016 IPR003390 DNA integrity scanning protein, DisA, N-terminal ccrud_RS12020 0608d38e751cacc094f3212d7abea0a1 366 SUPERFAMILY SSF47781 302 362 4.13E-9 T 14-09-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 ccrud_RS12020 0608d38e751cacc094f3212d7abea0a1 366 Hamap MF_01438 DNA integrity scanning protein DisA [disA]. 13 366 38.771 T 14-09-2016 IPR023763 DNA integrity scanning protein, DisA ccrud_RS12020 0608d38e751cacc094f3212d7abea0a1 366 Gene3D G3DSA:1.10.150.20 324 362 5.3E-5 T 14-09-2016 ccrud_RS12020 0608d38e751cacc094f3212d7abea0a1 366 Pfam PF10635 DisA bacterial checkpoint controller linker region 156 298 1.2E-40 T 14-09-2016 IPR018906 DNA integrity scanning, DisA, linker region ccrud_RS12020 0608d38e751cacc094f3212d7abea0a1 366 Gene3D G3DSA:3.40.1700.10 33 155 7.1E-32 T 14-09-2016 ccrud_RS12020 0608d38e751cacc094f3212d7abea0a1 366 SUPERFAMILY SSF143597 32 155 6.67E-29 T 14-09-2016 ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 Pfam PF00155 Aminotransferase class I and II 31 381 2.4E-64 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 Gene3D G3DSA:3.40.640.10 43 254 1.0E-70 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 Gene3D G3DSA:3.90.1150.10 255 383 1.3E-27 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 91 111 1.0E-10 T 14-09-2016 ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 197 220 1.0E-10 T 14-09-2016 ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 161 185 1.0E-10 T 14-09-2016 ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 113 134 1.0E-10 T 14-09-2016 ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 PANTHER PTHR11751 4 386 3.9E-135 T 14-09-2016 ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 SUPERFAMILY SSF53383 7 384 2.96E-100 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS04010 80519418909e9cf0a532bfb6b7b19919 387 PANTHER PTHR11751:SF428 4 386 3.9E-135 T 14-09-2016 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 Gene3D G3DSA:1.10.1750.10 414 515 2.0E-36 T 14-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 PANTHER PTHR30050:SF2 153 516 7.0E-182 T 14-09-2016 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 Gene3D G3DSA:3.40.50.300 175 343 2.1E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 SMART SM00382 211 339 1.3E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 310 337 3.6E-50 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 212 232 3.6E-50 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 276 290 3.6E-50 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 244 258 3.6E-50 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 473 492 3.6E-50 T 14-09-2016 IPR020591 Chromosomal replication control, initiator DnaA-like ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 SUPERFAMILY SSF48295 410 515 7.85E-34 T 14-09-2016 IPR010921 Trp repressor/replication initiator GO:0043565 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 Gene3D G3DSA:1.10.8.60 345 413 2.5E-27 T 14-09-2016 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 Pfam PF00308 Bacterial dnaA protein 179 395 5.2E-97 T 14-09-2016 IPR013317 Chromosomal replication initiator protein DnaA ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 44 512 2.9E-151 T 14-09-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 9 514 31.311 T 14-09-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 ProSitePatterns PS01008 DnaA protein signature. 473 492 - T 14-09-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 PANTHER PTHR30050 153 516 7.0E-182 T 14-09-2016 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 SUPERFAMILY SSF52540 178 389 7.84E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 SMART SM00760 423 492 1.4E-33 T 14-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 ccrud_RS00005 965dd05873ad0f06fda56a098e397836 519 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 427 492 1.4E-27 T 14-09-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 ccrud_RS10595 0d403a73ef3c91324257bf8e63f6c732 259 Gene3D G3DSA:1.10.10.60 26 76 1.8E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS10595 0d403a73ef3c91324257bf8e63f6c732 259 SUPERFAMILY SSF48498 100 222 2.0E-22 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS10595 0d403a73ef3c91324257bf8e63f6c732 259 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 53 76 1.6E-7 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS10595 0d403a73ef3c91324257bf8e63f6c732 259 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 45 1.6E-7 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS10595 0d403a73ef3c91324257bf8e63f6c732 259 PANTHER PTHR30328 28 225 7.9E-27 T 14-09-2016 ccrud_RS10595 0d403a73ef3c91324257bf8e63f6c732 259 SUPERFAMILY SSF46689 25 94 7.28E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS10595 0d403a73ef3c91324257bf8e63f6c732 259 PANTHER PTHR30328:SF16 28 225 7.9E-27 T 14-09-2016 ccrud_RS10595 0d403a73ef3c91324257bf8e63f6c732 259 Pfam PF00440 Bacterial regulatory proteins, tetR family 33 75 1.3E-11 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS10595 0d403a73ef3c91324257bf8e63f6c732 259 Gene3D G3DSA:1.10.357.10 81 219 9.0E-19 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 SUPERFAMILY SSF51735 103 285 5.29E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 14-09-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 PANTHER PTHR10996:SF20 1 358 1.6E-148 T 14-09-2016 ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 PANTHER PTHR10996 1 358 1.6E-148 T 14-09-2016 ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 SUPERFAMILY SSF52283 6 137 2.65E-37 T 14-09-2016 ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 TIGRFAM TIGR01327 PGDH: phosphoglycerate dehydrogenase 9 517 9.7E-178 T 14-09-2016 IPR006236 D-3-phosphoglycerate dehydrogenase GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 9 316 3.4E-36 T 14-09-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 Gene3D G3DSA:3.30.70.260 451 517 8.6E-10 T 14-09-2016 ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 Gene3D G3DSA:3.30.1330.90 322 450 3.4E-35 T 14-09-2016 IPR029009 Allosteric substrate binding domain ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 284 5.4E-63 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 SUPERFAMILY SSF143548 324 452 1.31E-28 T 14-09-2016 IPR029009 Allosteric substrate binding domain ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 Gene3D G3DSA:3.40.50.720 121 285 3.7E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 Gene3D G3DSA:3.40.50.720 6 120 4.8E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06140 81745ab4c3bcd1b23d6803a254bcfa9d 530 SUPERFAMILY SSF55021 456 517 5.95E-9 T 14-09-2016 ccrud_RS04650 be6e5a48091df20953a21a742861d7cb 197 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 8 179 1.1E-41 T 14-09-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 ccrud_RS04650 be6e5a48091df20953a21a742861d7cb 197 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 97 7.0E-44 T 14-09-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 ccrud_RS04650 be6e5a48091df20953a21a742861d7cb 197 Pfam PF01386 Ribosomal L25p family 7 94 2.2E-19 T 14-09-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 ccrud_RS04650 be6e5a48091df20953a21a742861d7cb 197 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 182 22.774 T 14-09-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 ccrud_RS04650 be6e5a48091df20953a21a742861d7cb 197 PANTHER PTHR33284 4 197 2.9E-40 T 14-09-2016 ccrud_RS04650 be6e5a48091df20953a21a742861d7cb 197 Gene3D G3DSA:2.170.120.20 99 187 9.5E-20 T 14-09-2016 IPR020057 Ribosomal protein L25, beta domain ccrud_RS04650 be6e5a48091df20953a21a742861d7cb 197 SUPERFAMILY SSF50715 5 188 2.62E-46 T 14-09-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 ccrud_RS04650 be6e5a48091df20953a21a742861d7cb 197 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 102 181 4.0E-16 T 14-09-2016 IPR020057 Ribosomal protein L25, beta domain ccrud_RS04650 be6e5a48091df20953a21a742861d7cb 197 Gene3D G3DSA:2.40.240.10 6 96 1.5E-24 T 14-09-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 ccrud_RS06175 ace06625fe35fa330fa3e24642ef8125 203 SUPERFAMILY SSF53335 18 190 4.48E-32 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06175 ace06625fe35fa330fa3e24642ef8125 203 Gene3D G3DSA:3.40.50.150 34 199 2.3E-30 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06175 ace06625fe35fa330fa3e24642ef8125 203 Pfam PF13847 Methyltransferase domain 55 172 8.2E-13 T 14-09-2016 IPR025714 Methyltransferase domain ccrud_RS11760 a4c9b833a31e44f86f8b49b29f8848d7 494 Gene3D G3DSA:1.20.1250.20 21 197 3.9E-27 T 14-09-2016 ccrud_RS11760 a4c9b833a31e44f86f8b49b29f8848d7 494 Gene3D G3DSA:1.20.1250.20 261 427 1.3E-14 T 14-09-2016 ccrud_RS11760 a4c9b833a31e44f86f8b49b29f8848d7 494 Gene3D G3DSA:1.20.1250.20 460 478 1.3E-14 T 14-09-2016 ccrud_RS11760 a4c9b833a31e44f86f8b49b29f8848d7 494 PANTHER PTHR23501:SF65 15 478 1.2E-138 T 14-09-2016 ccrud_RS11760 a4c9b833a31e44f86f8b49b29f8848d7 494 Pfam PF07690 Major Facilitator Superfamily 25 404 1.3E-40 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS11760 a4c9b833a31e44f86f8b49b29f8848d7 494 PANTHER PTHR23501 15 478 1.2E-138 T 14-09-2016 ccrud_RS11760 a4c9b833a31e44f86f8b49b29f8848d7 494 SUPERFAMILY SSF103473 254 427 3.53E-62 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS11760 a4c9b833a31e44f86f8b49b29f8848d7 494 SUPERFAMILY SSF103473 9 201 3.53E-62 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS11760 a4c9b833a31e44f86f8b49b29f8848d7 494 SUPERFAMILY SSF103473 460 486 3.53E-62 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 PANTHER PTHR23115 848 999 1.8E-178 T 14-09-2016 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 PANTHER PTHR23115:SF184 469 823 1.8E-178 T 14-09-2016 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 Gene3D G3DSA:2.40.30.10 671 764 3.3E-22 T 14-09-2016 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 Gene3D G3DSA:3.40.50.300 492 659 7.0E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 SUPERFAMILY SSF50447 673 756 1.49E-24 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 PRINTS PR00315 GTP-binding elongation factor signature 567 578 1.8E-9 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 PRINTS PR00315 GTP-binding elongation factor signature 603 612 1.8E-9 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 PRINTS PR00315 GTP-binding elongation factor signature 551 561 1.8E-9 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 PRINTS PR00315 GTP-binding elongation factor signature 499 512 1.8E-9 T 14-09-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 Pfam PF11987 Translation-initiation factor 2 793 890 2.8E-31 T 14-09-2016 IPR023115 Translation initiation factor IF- 2, domain 3 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 PANTHER PTHR23115 469 823 1.8E-178 T 14-09-2016 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 PANTHER PTHR23115:SF184 848 999 1.8E-178 T 14-09-2016 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 Gene3D G3DSA:3.40.50.10050 799 879 5.0E-21 T 14-09-2016 IPR023115 Translation initiation factor IF- 2, domain 3 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 3 52 5.6E-13 T 14-09-2016 IPR006847 Translation initiation factor IF-2, N-terminal ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 415 462 5.6E-8 T 14-09-2016 IPR006847 Translation initiation factor IF-2, N-terminal ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 Pfam PF00009 Elongation factor Tu GTP binding domain 500 659 6.2E-31 T 14-09-2016 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 410 998 1.8E-221 T 14-09-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 SUPERFAMILY SSF52156 780 907 1.15E-34 T 14-09-2016 IPR023115 Translation initiation factor IF- 2, domain 3 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 SUPERFAMILY SSF50447 901 998 9.59E-25 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 498 654 1.7E-28 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 4 998 16.546 T 14-09-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 Gene3D G3DSA:2.40.30.10 901 998 4.7E-32 T 14-09-2016 ccrud_RS08625 ad0ad3560a7f15132fe71b2417b9f346 1000 SUPERFAMILY SSF52540 492 662 8.77E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 SUPERFAMILY SSF51161 266 449 1.57E-40 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 Gene3D G3DSA:3.90.550.10 8 254 7.7E-71 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 Gene3D G3DSA:2.160.10.10 343 462 2.5E-29 T 14-09-2016 ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 PANTHER PTHR22572 9 460 3.2E-200 T 14-09-2016 ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 Gene3D G3DSA:2.160.10.10 255 342 6.0E-16 T 14-09-2016 ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 SUPERFAMILY SSF53448 10 318 6.08E-59 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 Pfam PF12804 MobA-like NTP transferase domain 10 227 2.1E-20 T 14-09-2016 IPR025877 MobA-like NTP transferase ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 7 463 40.135 T 14-09-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 405 439 0.0011 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 329 360 4.5E-4 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 278 311 3.0E-5 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 PANTHER PTHR22572:SF115 9 460 3.2E-200 T 14-09-2016 ccrud_RS04670 e1052e5656df9b79bd1f7dcab8ec919b 485 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 9 465 2.1E-171 T 14-09-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 ccrud_RS02525 758122a641b2559a4097fbd9717c62f2 171 SUPERFAMILY SSF160369 1 169 1.83E-45 T 14-09-2016 ccrud_RS02525 758122a641b2559a4097fbd9717c62f2 171 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 60 169 2.0E-4 T 14-09-2016 ccrud_RS02525 758122a641b2559a4097fbd9717c62f2 171 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 158 23.112 T 14-09-2016 IPR022973 Ribosomal protein L10 ccrud_RS02525 758122a641b2559a4097fbd9717c62f2 171 Pfam PF00466 Ribosomal protein L10 3 96 2.4E-24 T 14-09-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 ccrud_RS02525 758122a641b2559a4097fbd9717c62f2 171 PANTHER PTHR11560 1 170 3.2E-39 T 14-09-2016 ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 PANTHER PTHR10381:SF22 17 189 2.4E-103 T 14-09-2016 ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 Pfam PF00574 Clp protease 16 189 2.5E-78 T 14-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 Gene3D G3DSA:3.90.226.10 17 189 3.2E-76 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 PRINTS PR00127 Clp protease catalytic subunit P signature 109 128 3.3E-48 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 PRINTS PR00127 Clp protease catalytic subunit P signature 17 32 3.3E-48 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 PRINTS PR00127 Clp protease catalytic subunit P signature 57 77 3.3E-48 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 PRINTS PR00127 Clp protease catalytic subunit P signature 166 185 3.3E-48 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 PRINTS PR00127 Clp protease catalytic subunit P signature 88 105 3.3E-48 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 1 191 39.779 T 14-09-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 110 123 - T 14-09-2016 IPR033135 ClpP, histidine active site ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 SUPERFAMILY SSF52096 16 190 2.63E-67 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS10745 1a4aa3c7b150a927955548137ba4abc4 197 PANTHER PTHR10381 17 189 2.4E-103 T 14-09-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 319 3.6E-122 T 14-09-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 312 4.8E-95 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 PANTHER PTHR11735 1 340 4.3E-126 T 14-09-2016 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 PANTHER PTHR11735:SF6 1 340 4.3E-126 T 14-09-2016 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 338 59.341 T 14-09-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 SUPERFAMILY SSF53067 103 313 3.24E-33 T 14-09-2016 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 ProSitePatterns PS01016 Glycoprotease family signature. 98 118 - T 14-09-2016 IPR017860 Peptidase M22, conserved site KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 99 118 3.8E-51 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 3.8E-51 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 132 144 3.8E-51 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 78 98 3.8E-51 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 156 177 3.8E-51 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 269 278 3.8E-51 T 14-09-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 Gene3D G3DSA:3.30.420.40 1 149 8.2E-39 T 14-09-2016 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 SUPERFAMILY SSF53067 3 123 1.6E-24 T 14-09-2016 ccrud_RS03030 e9d6d308ca32357cdcbf0410620013bf 344 Pfam PF00814 Glycoprotease family 27 312 9.4E-93 T 14-09-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS13640 7e868c984048bba86e04e3f17529752d 241 SUPERFAMILY SSF55718 161 240 1.88E-15 T 14-09-2016 IPR003033 SCP2 sterol-binding domain ccrud_RS13640 7e868c984048bba86e04e3f17529752d 241 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 17 222 2.3E-32 T 14-09-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type ccrud_RS13640 7e868c984048bba86e04e3f17529752d 241 SUPERFAMILY SSF109854 3 157 7.78E-41 T 14-09-2016 ccrud_RS13640 7e868c984048bba86e04e3f17529752d 241 Pfam PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain 21 153 1.5E-22 T 14-09-2016 IPR024344 Mycothiol-dependent maleylpyruvate isomerase, metal-binding domain GO:0046872 ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 28 482 45.778 T 14-09-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 PANTHER PTHR11907 26 494 1.6E-211 T 14-09-2016 ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 Gene3D G3DSA:3.40.50.2020 289 463 3.3E-41 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 PANTHER PTHR11907:SF0 26 494 1.6E-211 T 14-09-2016 ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 SUPERFAMILY SSF56235 29 286 6.78E-67 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 Pfam PF13537 Glutamine amidotransferase domain 111 231 1.8E-15 T 14-09-2016 IPR017932 Glutamine amidotransferase type 2 domain ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 29 481 1.5E-150 T 14-09-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 Pfam PF00156 Phosphoribosyl transferase domain 307 403 1.9E-6 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 SUPERFAMILY SSF53271 268 487 3.9E-62 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 PIRSF PIRSF000485 25 497 4.5E-155 T 14-09-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 ccrud_RS11655 bd5548451e1051b1b9e6db60eb19cd93 503 Gene3D G3DSA:3.60.20.10 29 274 4.7E-64 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 Gene3D G3DSA:2.30.33.40 5 98 3.2E-35 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 SUPERFAMILY SSF50129 4 98 1.0E-31 T 14-09-2016 IPR011032 GroES-like ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 ProSitePatterns PS00681 Chaperonins cpn10 signature. 6 30 - T 14-09-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 PRINTS PR00297 10kDa chaperonin signature 28 49 4.6E-27 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 PRINTS PR00297 10kDa chaperonin signature 84 97 4.6E-27 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 PRINTS PR00297 10kDa chaperonin signature 63 75 4.6E-27 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 PRINTS PR00297 10kDa chaperonin signature 6 21 4.6E-27 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 SMART SM00883 5 97 5.6E-50 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 Hamap MF_00580 10 kDa chaperonin [groS]. 5 98 23.739 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 PANTHER PTHR10772 5 98 1.5E-40 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ccrud_RS03045 dafc3e529549bd69483e7db755ed9a0f 99 Pfam PF00166 Chaperonin 10 Kd subunit 5 97 3.7E-33 T 14-09-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 ccrud_RS05920 8b5a7037bbaa5354e862836785f98928 376 Gene3D G3DSA:3.90.1150.10 240 364 2.5E-36 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS05920 8b5a7037bbaa5354e862836785f98928 376 PANTHER PTHR11601 5 371 7.4E-109 T 14-09-2016 ccrud_RS05920 8b5a7037bbaa5354e862836785f98928 376 Gene3D G3DSA:3.40.640.10 20 239 1.7E-59 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS05920 8b5a7037bbaa5354e862836785f98928 376 PANTHER PTHR11601:SF20 5 371 7.4E-109 T 14-09-2016 ccrud_RS05920 8b5a7037bbaa5354e862836785f98928 376 Pfam PF00266 Aminotransferase class-V 5 358 1.5E-49 T 14-09-2016 IPR000192 Aminotransferase class V domain ccrud_RS05920 8b5a7037bbaa5354e862836785f98928 376 SUPERFAMILY SSF53383 3 366 1.42E-77 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS05920 8b5a7037bbaa5354e862836785f98928 376 PIRSF PIRSF005572 2 372 4.1E-100 T 14-09-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 PANTHER PTHR11662 431 463 1.2E-62 T 14-09-2016 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 Gene3D G3DSA:1.20.1250.20 29 220 4.3E-29 T 14-09-2016 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 PRINTS PR01896 ABC transporter family B2 signature 187 203 9.7E-5 T 14-09-2016 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 PRINTS PR01896 ABC transporter family B2 signature 301 315 9.7E-5 T 14-09-2016 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 PRINTS PR01896 ABC transporter family B2 signature 456 471 9.7E-5 T 14-09-2016 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 SUPERFAMILY SSF103473 22 469 2.88E-59 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 Gene3D G3DSA:1.20.1250.20 248 463 4.3E-19 T 14-09-2016 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 PANTHER PTHR11662:SF277 17 412 1.2E-62 T 14-09-2016 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 Pfam PF07690 Major Facilitator Superfamily 38 363 9.5E-37 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 PANTHER PTHR11662 17 412 1.2E-62 T 14-09-2016 ccrud_RS12870 63bf8e77fe9fdbb714f20fbede89e162 477 PANTHER PTHR11662:SF277 431 463 1.2E-62 T 14-09-2016 ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 114 130 5.2E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 201 5.2E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 65 76 5.2E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.2E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 159 176 5.2E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 PANTHER PTHR24322 139 170 3.2E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 PANTHER PTHR24322 12 123 3.2E-15 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 SUPERFAMILY SSF51735 1 214 3.06E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 34 213 5.7E-21 T 14-09-2016 ccrud_RS01665 ee8027b4d10cea8b4739e7b57c3db064 223 Gene3D G3DSA:3.40.50.720 3 214 3.7E-31 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 249 3.7E-52 T 14-09-2016 ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 Gene3D G3DSA:3.40.50.720 2 249 4.6E-72 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.2E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.2E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 75 86 2.2E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 2.2E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.2E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.2E-34 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.0E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.0E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 75 86 1.0E-10 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PANTHER PTHR24322 8 134 1.0E-50 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 PANTHER PTHR24322 150 186 1.0E-50 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13795 f21d83a90e706cc06840db65235198a1 255 SUPERFAMILY SSF51735 4 249 2.79E-70 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03850 29c4999fd0e0df29d9caeb615aece771 189 PANTHER PTHR31559 1 187 5.9E-62 T 14-09-2016 ccrud_RS03850 29c4999fd0e0df29d9caeb615aece771 189 PANTHER PTHR31559:SF0 1 187 5.9E-62 T 14-09-2016 ccrud_RS03850 29c4999fd0e0df29d9caeb615aece771 189 TIGRFAM TIGR03800 PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 1 178 2.8E-53 T 14-09-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 ccrud_RS03850 29c4999fd0e0df29d9caeb615aece771 189 ProSitePatterns PS01236 PdxT/SNO family family signature. 29 39 - T 14-09-2016 IPR021196 PdxT/SNO family, conserved site KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 ccrud_RS03850 29c4999fd0e0df29d9caeb615aece771 189 PIRSF PIRSF005639 1 185 1.9E-55 T 14-09-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 ccrud_RS03850 29c4999fd0e0df29d9caeb615aece771 189 Pfam PF01174 SNO glutamine amidotransferase family 1 178 2.1E-43 T 14-09-2016 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO GO:0004359|GO:0042819|GO:0042823 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 ccrud_RS03850 29c4999fd0e0df29d9caeb615aece771 189 SUPERFAMILY SSF52317 4 184 2.23E-39 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS03850 29c4999fd0e0df29d9caeb615aece771 189 Gene3D G3DSA:3.40.50.880 2 186 3.6E-57 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS06510 acd53f2381728a018c561cea846bafe9 319 PANTHER PTHR30450:SF2 50 290 3.5E-84 T 14-09-2016 ccrud_RS06510 acd53f2381728a018c561cea846bafe9 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 281 9.1E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS06510 acd53f2381728a018c561cea846bafe9 319 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 68 175 3.7E-16 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 ccrud_RS06510 acd53f2381728a018c561cea846bafe9 319 Gene3D G3DSA:1.10.3720.10 25 283 2.8E-44 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS06510 acd53f2381728a018c561cea846bafe9 319 PANTHER PTHR30450 50 290 3.5E-84 T 14-09-2016 ccrud_RS06510 acd53f2381728a018c561cea846bafe9 319 SUPERFAMILY SSF161098 67 267 1.57E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 SMART SM00836 429 550 7.1E-54 T 14-09-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 18 93 8.3E-24 T 14-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 132 141 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 Hamap MF_00123 Arginine--tRNA ligase [argS]. 8 550 27.304 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 PRINTS PR01038 Arginyl-tRNA synthetase signature 137 153 1.9E-23 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 PRINTS PR01038 Arginyl-tRNA synthetase signature 122 137 1.9E-23 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 PRINTS PR01038 Arginyl-tRNA synthetase signature 161 174 1.9E-23 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 PRINTS PR01038 Arginyl-tRNA synthetase signature 298 319 1.9E-23 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 SUPERFAMILY SSF55190 5 113 1.02E-22 T 14-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 PANTHER PTHR11956:SF6 1 550 6.0E-206 T 14-09-2016 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 Gene3D G3DSA:3.40.50.620 122 434 1.5E-92 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 11 550 3.3E-131 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 Pfam PF05746 DALR anticodon binding domain 429 550 6.9E-40 T 14-09-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 SUPERFAMILY SSF52374 122 439 3.75E-82 T 14-09-2016 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 Pfam PF00750 tRNA synthetases class I (R) 103 391 1.5E-21 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 SMART SM01016 4 93 1.1E-33 T 14-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 Gene3D G3DSA:1.10.730.10 435 550 2.3E-45 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 Gene3D G3DSA:3.30.1360.70 3 111 2.8E-30 T 14-09-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 PANTHER PTHR11956 1 550 6.0E-206 T 14-09-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 ccrud_RS05700 14d79e657eeeb9c5ff4af3dce5cec79c 550 SUPERFAMILY SSF47323 423 550 4.97E-38 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 PANTHER PTHR24031:SF261 7 559 2.1E-246 T 14-09-2016 ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 Gene3D G3DSA:3.40.50.300 301 462 8.4E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 Pfam PF03880 DbpA RNA binding domain 578 649 3.8E-21 T 14-09-2016 IPR005580 DbpA, RNA-binding domain ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 SMART SM00487 113 311 1.3E-66 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 PANTHER PTHR24031:SF261 606 723 2.1E-246 T 14-09-2016 ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 PANTHER PTHR24031 606 723 2.1E-246 T 14-09-2016 ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 89 650 45.662 T 14-09-2016 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 Gene3D G3DSA:3.40.50.300 79 300 5.4E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 SUPERFAMILY SSF52540 162 449 1.05E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 242 250 - T 14-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 Pfam PF00270 DEAD/DEAH box helicase 119 283 6.6E-52 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 PANTHER PTHR24031 7 559 2.1E-246 T 14-09-2016 ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 SMART SM00490 347 428 5.3E-33 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS05570 2c2bbd7f515e49a4afbfe8f60ddb03d5 737 Pfam PF00271 Helicase conserved C-terminal domain 320 428 2.0E-28 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS08710 6b7edaa6e55055c3f228b9237c111a72 351 PANTHER PTHR11614 63 341 1.1E-63 T 14-09-2016 ccrud_RS08710 6b7edaa6e55055c3f228b9237c111a72 351 PANTHER PTHR11614:SF40 63 341 1.1E-63 T 14-09-2016 ccrud_RS08710 6b7edaa6e55055c3f228b9237c111a72 351 Pfam PF12146 Serine aminopeptidase, S33 63 322 8.2E-20 T 14-09-2016 IPR022742 Serine aminopeptidase, S33 ccrud_RS08710 6b7edaa6e55055c3f228b9237c111a72 351 Gene3D G3DSA:3.40.50.1820 62 340 1.9E-20 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS08710 6b7edaa6e55055c3f228b9237c111a72 351 SUPERFAMILY SSF53474 62 341 4.09E-23 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS12560 7a383a0fc88bfecbc4d8a3d09c76d8f3 173 Pfam PF13673 Acetyltransferase (GNAT) domain 77 149 7.4E-12 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS12560 7a383a0fc88bfecbc4d8a3d09c76d8f3 173 SUPERFAMILY SSF55729 4 159 1.54E-24 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS12560 7a383a0fc88bfecbc4d8a3d09c76d8f3 173 Gene3D G3DSA:3.40.630.30 3 160 1.8E-24 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS12560 7a383a0fc88bfecbc4d8a3d09c76d8f3 173 PANTHER PTHR23091 1 160 9.5E-19 T 14-09-2016 ccrud_RS12175 354f0c1ba054246139b8c350b3982955 514 PANTHER PTHR11558:SF26 238 511 9.1E-70 T 14-09-2016 ccrud_RS12175 354f0c1ba054246139b8c350b3982955 514 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 294 307 - T 14-09-2016 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 ccrud_RS12175 354f0c1ba054246139b8c350b3982955 514 Gene3D G3DSA:3.40.50.150 272 507 2.4E-58 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS12175 354f0c1ba054246139b8c350b3982955 514 SUPERFAMILY SSF53335 224 456 1.91E-59 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS12175 354f0c1ba054246139b8c350b3982955 514 PANTHER PTHR11558 238 511 9.1E-70 T 14-09-2016 ccrud_RS12175 354f0c1ba054246139b8c350b3982955 514 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 221 495 21.945 T 14-09-2016 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|UniPathway: UPA00248 ccrud_RS12175 354f0c1ba054246139b8c350b3982955 514 Pfam PF01564 Spermine/spermidine synthase 231 448 3.5E-36 T 14-09-2016 ccrud_RS08795 e61b64129ec26b9d4287bd18c53617d1 366 PANTHER PTHR30544 16 364 3.3E-152 T 14-09-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS08795 e61b64129ec26b9d4287bd18c53617d1 366 PIRSF PIRSF006004 15 366 2.0E-119 T 14-09-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS08795 e61b64129ec26b9d4287bd18c53617d1 366 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 18 366 65.896 T 14-09-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS08795 e61b64129ec26b9d4287bd18c53617d1 366 SMART SM00729 118 338 0.0048 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 ccrud_RS08795 e61b64129ec26b9d4287bd18c53617d1 366 SUPERFAMILY SSF102114 113 336 3.92E-20 T 14-09-2016 ccrud_RS08795 e61b64129ec26b9d4287bd18c53617d1 366 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 22 364 2.6E-100 T 14-09-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS08795 e61b64129ec26b9d4287bd18c53617d1 366 Pfam PF04055 Radical SAM superfamily 123 291 1.8E-23 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 ccrud_RS08795 e61b64129ec26b9d4287bd18c53617d1 366 PANTHER PTHR30544:SF5 16 364 3.3E-152 T 14-09-2016 ccrud_RS08795 e61b64129ec26b9d4287bd18c53617d1 366 Gene3D G3DSA:3.20.20.70 117 332 6.2E-19 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS05910 7ddcf9e3bbb2ce18972090baaee06ec4 262 Pfam PF01012 Electron transfer flavoprotein domain 24 211 4.3E-37 T 14-09-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 ccrud_RS05910 7ddcf9e3bbb2ce18972090baaee06ec4 262 Gene3D G3DSA:3.40.50.620 4 261 2.6E-67 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS05910 7ddcf9e3bbb2ce18972090baaee06ec4 262 SMART SM00893 23 216 1.7E-38 T 14-09-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 ccrud_RS05910 7ddcf9e3bbb2ce18972090baaee06ec4 262 SUPERFAMILY SSF52402 4 256 1.33E-55 T 14-09-2016 ccrud_RS05910 7ddcf9e3bbb2ce18972090baaee06ec4 262 PANTHER PTHR21294 1 262 5.5E-69 T 14-09-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 ccrud_RS05910 7ddcf9e3bbb2ce18972090baaee06ec4 262 PIRSF PIRSF000090 2 262 1.4E-70 T 14-09-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 ccrud_RS05910 7ddcf9e3bbb2ce18972090baaee06ec4 262 PANTHER PTHR21294:SF0 1 262 5.5E-69 T 14-09-2016 ccrud_RS00355 5f36203e4b32cd09044521e7541a3937 304 Gene3D G3DSA:3.40.50.720 82 267 2.9E-59 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00355 5f36203e4b32cd09044521e7541a3937 304 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 206 222 - T 14-09-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site ccrud_RS00355 5f36203e4b32cd09044521e7541a3937 304 SUPERFAMILY SSF51735 85 267 8.41E-50 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00355 5f36203e4b32cd09044521e7541a3937 304 PANTHER PTHR10996 75 300 3.9E-68 T 14-09-2016 ccrud_RS00355 5f36203e4b32cd09044521e7541a3937 304 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 99 267 1.1E-53 T 14-09-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 ccrud_RS05135 3e3296ad50ebdb5fe80905b5d30e9a45 398 ProSitePatterns PS00216 Sugar transport proteins signature 1. 68 84 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS05135 3e3296ad50ebdb5fe80905b5d30e9a45 398 SUPERFAMILY SSF103473 13 390 2.62E-60 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS05135 3e3296ad50ebdb5fe80905b5d30e9a45 398 PANTHER PTHR23531:SF1 3 396 1.4E-69 T 14-09-2016 ccrud_RS05135 3e3296ad50ebdb5fe80905b5d30e9a45 398 Pfam PF07690 Major Facilitator Superfamily 18 291 1.1E-36 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS05135 3e3296ad50ebdb5fe80905b5d30e9a45 398 Gene3D G3DSA:1.20.1250.20 210 389 1.2E-23 T 14-09-2016 ccrud_RS05135 3e3296ad50ebdb5fe80905b5d30e9a45 398 Gene3D G3DSA:1.20.1250.20 12 192 3.0E-32 T 14-09-2016 ccrud_RS05135 3e3296ad50ebdb5fe80905b5d30e9a45 398 PANTHER PTHR23531 3 396 1.4E-69 T 14-09-2016 ccrud_RS08595 eccb0d8979d66f93cf93d4bd8757c82a 297 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 9 219 3.7E-64 T 14-09-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS08595 eccb0d8979d66f93cf93d4bd8757c82a 297 SUPERFAMILY SSF55120 9 226 1.17E-69 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS08595 eccb0d8979d66f93cf93d4bd8757c82a 297 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 7 290 17.078 T 14-09-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS08595 eccb0d8979d66f93cf93d4bd8757c82a 297 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 182 223 3.6E-11 T 14-09-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal ccrud_RS08595 eccb0d8979d66f93cf93d4bd8757c82a 297 PANTHER PTHR13767 9 292 3.3E-99 T 14-09-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS08595 eccb0d8979d66f93cf93d4bd8757c82a 297 Pfam PF09142 tRNA Pseudouridine synthase II, C terminal 238 292 1.0E-19 T 14-09-2016 IPR015225 tRNA pseudouridine synthase II, TruB, subfamily 2, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS08595 eccb0d8979d66f93cf93d4bd8757c82a 297 SUPERFAMILY SSF88697 238 294 1.29E-14 T 14-09-2016 IPR015947 PUA-like domain ccrud_RS08595 eccb0d8979d66f93cf93d4bd8757c82a 297 PANTHER PTHR13767:SF2 9 292 3.3E-99 T 14-09-2016 ccrud_RS08595 eccb0d8979d66f93cf93d4bd8757c82a 297 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 29 181 1.2E-48 T 14-09-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 ccrud_RS13050 e400eacf265ae1809e6f4590d128ec90 811 SUPERFAMILY SSF82866 64 79 7.06E-32 T 14-09-2016 ccrud_RS13050 e400eacf265ae1809e6f4590d128ec90 811 SUPERFAMILY SSF82866 138 341 7.06E-32 T 14-09-2016 ccrud_RS13050 e400eacf265ae1809e6f4590d128ec90 811 PANTHER PTHR33406:SF1 1 720 7.1E-179 T 14-09-2016 ccrud_RS13050 e400eacf265ae1809e6f4590d128ec90 811 Gene3D G3DSA:1.20.1640.10 481 694 1.5E-33 T 14-09-2016 ccrud_RS13050 e400eacf265ae1809e6f4590d128ec90 811 Gene3D G3DSA:1.20.1640.10 138 343 2.3E-30 T 14-09-2016 ccrud_RS13050 e400eacf265ae1809e6f4590d128ec90 811 SUPERFAMILY SSF82866 474 692 9.68E-31 T 14-09-2016 ccrud_RS13050 e400eacf265ae1809e6f4590d128ec90 811 Pfam PF03176 MMPL family 66 367 3.0E-45 T 14-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 ccrud_RS13050 e400eacf265ae1809e6f4590d128ec90 811 Pfam PF03176 MMPL family 482 692 3.5E-23 T 14-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 ccrud_RS13050 e400eacf265ae1809e6f4590d128ec90 811 PANTHER PTHR33406 1 720 7.1E-179 T 14-09-2016 ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 SUPERFAMILY SSF103473 218 475 1.29E-23 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 PANTHER PTHR23501 18 482 6.6E-148 T 14-09-2016 ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 PANTHER PTHR23501:SF82 18 482 6.6E-148 T 14-09-2016 ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 Pfam PF07690 Major Facilitator Superfamily 27 422 2.4E-51 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 SUPERFAMILY SSF103473 15 253 8.89E-40 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 PRINTS PR01036 Tetracycline resistance protein TetB signature 26 50 2.3E-9 T 14-09-2016 ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 PRINTS PR01036 Tetracycline resistance protein TetB signature 147 171 2.3E-9 T 14-09-2016 ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 PRINTS PR01036 Tetracycline resistance protein TetB signature 117 137 2.3E-9 T 14-09-2016 ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 23 451 1.1E-94 T 14-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 Gene3D G3DSA:1.20.1250.20 278 479 5.0E-20 T 14-09-2016 ccrud_RS12095 a8dee37aa01577ea28ef4a9e80e242ad 484 Gene3D G3DSA:1.20.1250.20 26 200 3.3E-31 T 14-09-2016 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 133 144 6.4E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 279 302 6.4E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 51 70 6.4E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 6.4E-25 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 314 2.1E-101 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 51 58 - T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 SUPERFAMILY SSF53671 6 316 2.36E-93 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 Gene3D G3DSA:3.40.50.1370 6 141 1.2E-49 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PANTHER PTHR11405 8 317 6.7E-116 T 14-09-2016 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 315 71.949 T 14-09-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 146 1.1E-43 T 14-09-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PANTHER PTHR11405:SF1 8 317 6.7E-116 T 14-09-2016 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PRINTS PR00102 Ornithine carbamoyltransferase signature 122 136 1.7E-26 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PRINTS PR00102 Ornithine carbamoyltransferase signature 293 304 1.7E-26 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PRINTS PR00102 Ornithine carbamoyltransferase signature 49 63 1.7E-26 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PRINTS PR00102 Ornithine carbamoyltransferase signature 82 95 1.7E-26 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 PRINTS PR00102 Ornithine carbamoyltransferase signature 231 241 1.7E-26 T 14-09-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 Gene3D G3DSA:3.40.50.1370 142 301 6.3E-57 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS06705 ecf5e8d1042b6f4668d40d097eb026a8 319 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 158 312 6.3E-50 T 14-09-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 ccrud_RS12945 f5b174aa4377427e1085496d325669a2 511 PIRSF PIRSF002741 1 511 4.9E-83 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ccrud_RS12945 f5b174aa4377427e1085496d325669a2 511 SUPERFAMILY SSF53850 32 509 8.26E-100 T 14-09-2016 ccrud_RS12945 f5b174aa4377427e1085496d325669a2 511 Gene3D G3DSA:3.10.105.10 272 477 4.5E-36 T 14-09-2016 ccrud_RS12945 f5b174aa4377427e1085496d325669a2 511 PANTHER PTHR30290 6 509 1.2E-100 T 14-09-2016 ccrud_RS12945 f5b174aa4377427e1085496d325669a2 511 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 416 2.0E-73 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain ccrud_RS12945 f5b174aa4377427e1085496d325669a2 511 Gene3D G3DSA:3.90.76.10 55 198 3.1E-32 T 14-09-2016 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 SUPERFAMILY SSF56300 168 439 1.13E-33 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 Pfam PF00149 Calcineurin-like phosphoesterase 169 354 3.6E-12 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 PANTHER PTHR22953:SF0 99 393 2.4E-20 T 14-09-2016 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 PANTHER PTHR22953:SF0 62 77 2.4E-20 T 14-09-2016 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 Gene3D G3DSA:2.60.40.380 52 161 1.2E-9 T 14-09-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 Pfam PF16656 Purple acid Phosphatase, N-terminal domain 52 160 2.0E-17 T 14-09-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 Gene3D G3DSA:3.60.21.10 165 475 6.8E-40 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 PANTHER PTHR22953:SF0 420 514 2.4E-20 T 14-09-2016 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 PANTHER PTHR22953 99 393 2.4E-20 T 14-09-2016 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 PANTHER PTHR22953 62 77 2.4E-20 T 14-09-2016 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 PANTHER PTHR22953 420 514 2.4E-20 T 14-09-2016 ccrud_RS13315 e93d88dba170b24f6b80a9de5d483ffc 530 SUPERFAMILY SSF49363 50 160 2.62E-9 T 14-09-2016 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 Gene3D G3DSA:3.40.720.10 35 487 2.0E-120 T 14-09-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 PANTHER PTHR10342 400 585 1.5E-146 T 14-09-2016 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 PANTHER PTHR10342:SF201 400 585 1.5E-146 T 14-09-2016 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 ProSitePatterns PS00149 Sulfatases signature 2. 133 143 - T 14-09-2016 IPR024607 Sulfatase, conserved site ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 PANTHER PTHR10342 295 348 1.5E-146 T 14-09-2016 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 PANTHER PTHR10342:SF201 9 258 1.5E-146 T 14-09-2016 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 SUPERFAMILY SSF53649 37 558 8.58E-137 T 14-09-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 PANTHER PTHR10342:SF201 295 348 1.5E-146 T 14-09-2016 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 Pfam PF00884 Sulfatase 37 459 4.4E-82 T 14-09-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 Gene3D G3DSA:3.30.1120.10 489 572 2.6E-19 T 14-09-2016 ccrud_RS12965 00c8f98bab687590e7e3c31aa97cfb72 772 PANTHER PTHR10342 9 258 1.5E-146 T 14-09-2016 ccrud_RS10360 d673f925b534ecc035b8b336e8a9db75 638 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 86 536 2.8E-139 T 14-09-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 ccrud_RS10360 d673f925b534ecc035b8b336e8a9db75 638 PANTHER PTHR30047 13 541 2.9E-186 T 14-09-2016 ccrud_RS10360 d673f925b534ecc035b8b336e8a9db75 638 PANTHER PTHR30047:SF2 13 541 2.9E-186 T 14-09-2016 ccrud_RS10360 d673f925b534ecc035b8b336e8a9db75 638 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 48 535 1.4E-166 T 14-09-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 5.5E-53 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 36.575 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 14-09-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 PANTHER PTHR12220 1 136 2.4E-66 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 SUPERFAMILY SSF54686 1 136 3.01E-53 T 14-09-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.3E-35 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.3E-35 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.3E-35 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.3E-35 T 14-09-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 Gene3D G3DSA:3.90.1170.10 23 136 1.5E-50 T 14-09-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 2.4E-46 T 14-09-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02640 100b3d5e212400f36b5ef2d872a85e35 138 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 14-09-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS00085 6c08082b83d79d10767633de4cdec071 332 ProDom PD024513 PERMEASE 2-KETO-3-DEOXYGLUCONATE MEMBRANE TRANSMEMBRANE SUGAR KDG SYMPORT INNER 2-KETO-3-DEOXY-D-GLUCONATE SYSTEM 16 316 7.0E-118 T 14-09-2016 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 ccrud_RS00085 6c08082b83d79d10767633de4cdec071 332 Pfam PF03812 2-keto-3-deoxygluconate permease 7 316 2.8E-104 T 14-09-2016 IPR004684 2-keto-3-deoxygluconate permease GO:0008643|GO:0015649|GO:0016021|GO:0046411 ccrud_RS12130 d95314d82aded388f9092372b512f464 159 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 4 132 8.6E-32 T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 ccrud_RS12130 d95314d82aded388f9092372b512f464 159 SUPERFAMILY SSF55083 2 153 1.29E-40 T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 ccrud_RS12130 d95314d82aded388f9092372b512f464 159 PANTHER PTHR20941 3 154 3.3E-43 T 14-09-2016 ccrud_RS12130 d95314d82aded388f9092372b512f464 159 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 83 94 - T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 ccrud_RS12130 d95314d82aded388f9092372b512f464 159 PANTHER PTHR20941:SF10 3 154 3.3E-43 T 14-09-2016 ccrud_RS12130 d95314d82aded388f9092372b512f464 159 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 3 131 1.2E-33 T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 ccrud_RS12130 d95314d82aded388f9092372b512f464 159 Gene3D G3DSA:3.30.70.560 2 152 1.6E-42 T 14-09-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 Pfam PF11897 Protein of unknown function (DUF3417) 13 124 6.5E-33 T 14-09-2016 IPR024517 Glycogen phosphorylase, domain of unknown function DUF3417 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 TIGRFAM TIGR02094 more_P_ylases: alpha-glucan phosphorylases 111 716 3.8E-260 T 14-09-2016 IPR011834 Alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 PANTHER PTHR11468 501 783 3.3E-237 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 PANTHER PTHR11468 110 483 3.3E-237 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 Pfam PF00343 Carbohydrate phosphorylase 235 635 1.9E-24 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 Pfam PF00343 Carbohydrate phosphorylase 128 191 3.8E-7 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 PIRSF PIRSF000460 1 797 3.7E-276 T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 SUPERFAMILY SSF53756 12 732 3.45E-197 T 14-09-2016 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 606 618 - T 14-09-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 Gene3D G3DSA:3.40.50.2000 429 718 4.8E-78 T 14-09-2016 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 Gene3D G3DSA:3.40.50.2000 24 428 1.3E-91 T 14-09-2016 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 PANTHER PTHR11468:SF9 501 783 3.3E-237 T 14-09-2016 ccrud_RS09125 35ded85b97522294d40b088115c2668a 851 PANTHER PTHR11468:SF9 110 483 3.3E-237 T 14-09-2016 ccrud_RS00755 44a9048eb1f0a4f335a2978a6b7d6aee 239 SUPERFAMILY SSF51197 29 237 7.69E-41 T 14-09-2016 ccrud_RS00755 44a9048eb1f0a4f335a2978a6b7d6aee 239 PANTHER PTHR16557 31 236 4.6E-47 T 14-09-2016 IPR004574 Alkylated DNA repair protein AlkB GO:0006281|GO:0055114 ccrud_RS00755 44a9048eb1f0a4f335a2978a6b7d6aee 239 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 31 235 5.6E-44 T 14-09-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like ccrud_RS00755 44a9048eb1f0a4f335a2978a6b7d6aee 239 Gene3D G3DSA:2.60.120.590 28 237 4.3E-45 T 14-09-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like ccrud_RS01140 d1ee0bcbdfe69a49c8fb858e4c4516c4 268 PANTHER PTHR30632 9 265 1.2E-40 T 14-09-2016 ccrud_RS01140 d1ee0bcbdfe69a49c8fb858e4c4516c4 268 PIRSF PIRSF004846 1 268 3.1E-60 T 14-09-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 ccrud_RS01140 d1ee0bcbdfe69a49c8fb858e4c4516c4 268 Gene3D G3DSA:3.40.190.10 188 259 3.5E-4 T 14-09-2016 ccrud_RS01140 d1ee0bcbdfe69a49c8fb858e4c4516c4 268 Gene3D G3DSA:3.40.190.10 45 174 1.1E-29 T 14-09-2016 ccrud_RS01140 d1ee0bcbdfe69a49c8fb858e4c4516c4 268 Pfam PF13531 Bacterial extracellular solute-binding protein 50 265 5.9E-32 T 14-09-2016 ccrud_RS01140 d1ee0bcbdfe69a49c8fb858e4c4516c4 268 SUPERFAMILY SSF53850 51 265 5.44E-48 T 14-09-2016 ccrud_RS01140 d1ee0bcbdfe69a49c8fb858e4c4516c4 268 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 54 264 2.9E-40 T 14-09-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 ccrud_RS01140 d1ee0bcbdfe69a49c8fb858e4c4516c4 268 PANTHER PTHR30632:SF0 9 265 1.2E-40 T 14-09-2016 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 SUPERFAMILY SSF63520 179 280 3.66E-18 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 SUPERFAMILY SSF63520 54 171 1.96E-13 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 PANTHER PTHR30185 2 284 2.0E-56 T 14-09-2016 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 Gene3D G3DSA:2.30.24.10 2 53 3.9E-20 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 Gene3D G3DSA:1.10.1790.10 65 169 2.2E-13 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 Gene3D G3DSA:1.10.1790.10 178 282 3.0E-22 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 Pfam PF03123 CAT RNA binding domain 2 54 2.2E-18 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 Pfam PF00874 PRD domain 187 279 5.4E-11 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 Pfam PF00874 PRD domain 79 168 5.9E-5 T 14-09-2016 IPR011608 PRD domain GO:0006355 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 SUPERFAMILY SSF50151 2 52 5.75E-15 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 PANTHER PTHR30185:SF2 2 284 2.0E-56 T 14-09-2016 ccrud_RS12820 3e2f0e98a0a71486dcdd92a7ec10542b 289 SMART SM01061 1 58 1.9E-24 T 14-09-2016 IPR004341 CAT RNA-binding domain GO:0003723 ccrud_RS02445 90f36b5d36f5e51c0ad3027f117a1ca4 440 PANTHER PTHR11785 1 416 1.1E-157 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 ccrud_RS02445 90f36b5d36f5e51c0ad3027f117a1ca4 440 PIRSF PIRSF006060 1 433 4.6E-58 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 ccrud_RS02445 90f36b5d36f5e51c0ad3027f117a1ca4 440 PANTHER PTHR11785:SF336 1 416 1.1E-157 T 14-09-2016 ccrud_RS02445 90f36b5d36f5e51c0ad3027f117a1ca4 440 Pfam PF00324 Amino acid permease 1 416 4.9E-92 T 14-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 ccrud_RS01050 3b1ba25f77bd6ecd1bd9b24c1e2d7a59 211 Pfam PF03473 MOSC domain 57 165 1.1E-14 T 14-09-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 ccrud_RS01050 3b1ba25f77bd6ecd1bd9b24c1e2d7a59 211 SUPERFAMILY SSF50800 3 210 7.32E-53 T 14-09-2016 IPR011037 Pyruvate kinase-like, insert domain ccrud_RS01050 3b1ba25f77bd6ecd1bd9b24c1e2d7a59 211 Gene3D G3DSA:2.40.33.20 2 209 3.0E-60 T 14-09-2016 IPR015808 Molybdenum cofactor sulfurase, C-terminal-like ccrud_RS01050 3b1ba25f77bd6ecd1bd9b24c1e2d7a59 211 PANTHER PTHR30212 1 211 3.7E-32 T 14-09-2016 ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 Gene3D G3DSA:1.10.10.10 148 226 6.8E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 PANTHER PTHR24567 4 227 1.2E-59 T 14-09-2016 ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 SUPERFAMILY SSF46785 148 226 2.84E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 SMART SM00419 170 218 1.0E-12 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 PRINTS PR00103 cAMP-dependent protein kinase signature 49 63 1.7E-5 T 14-09-2016 ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 PRINTS PR00103 cAMP-dependent protein kinase signature 91 102 1.7E-5 T 14-09-2016 ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 PRINTS PR00103 cAMP-dependent protein kinase signature 34 48 1.7E-5 T 14-09-2016 ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 PRINTS PR00103 cAMP-dependent protein kinase signature 79 88 1.7E-5 T 14-09-2016 ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 SMART SM00100 13 134 1.2E-25 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 PANTHER PTHR24567:SF30 4 227 1.2E-59 T 14-09-2016 ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 Pfam PF13545 Crp-like helix-turn-helix domain 151 224 3.4E-17 T 14-09-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 Gene3D G3DSA:2.60.120.10 5 147 1.0E-37 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 Pfam PF00027 Cyclic nucleotide-binding domain 32 117 2.4E-22 T 14-09-2016 IPR000595 Cyclic nucleotide-binding domain ccrud_RS01500 6a453fbb9f31da816ab9ecacf7ce7e2f 227 SUPERFAMILY SSF51206 7 145 1.96E-36 T 14-09-2016 IPR018490 Cyclic nucleotide-binding-like ccrud_RS01975 68ed2d08b832cb826b56eed7e7d3d424 257 SUPERFAMILY SSF81343 29 254 1.2E-34 T 14-09-2016 ccrud_RS01975 68ed2d08b832cb826b56eed7e7d3d424 257 Gene3D G3DSA:1.20.950.10 33 242 2.2E-12 T 14-09-2016 ccrud_RS01975 68ed2d08b832cb826b56eed7e7d3d424 257 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 128 240 5.7E-7 T 14-09-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 ccrud_RS01975 68ed2d08b832cb826b56eed7e7d3d424 257 TIGRFAM TIGR02046 sdhC_b558_fam: succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family 32 254 8.4E-41 T 14-09-2016 IPR011138 Succinate dehydrogenase cytochrome b558 subunit UniPathway: UPA00223 ccrud_RS05525 fac96cdd8d406100e2a1e488b43a2e30 298 PANTHER PTHR14226:SF25 12 296 3.9E-23 T 14-09-2016 ccrud_RS05525 fac96cdd8d406100e2a1e488b43a2e30 298 Pfam PF01734 Patatin-like phospholipase 14 177 6.7E-12 T 14-09-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 ccrud_RS05525 fac96cdd8d406100e2a1e488b43a2e30 298 PANTHER PTHR14226 12 296 3.9E-23 T 14-09-2016 ccrud_RS05525 fac96cdd8d406100e2a1e488b43a2e30 298 SUPERFAMILY SSF52151 12 290 5.49E-27 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS04495 1425583b8f6171877042111ae0c732cb 374 SUPERFAMILY SSF53955 291 373 1.18E-28 T 14-09-2016 IPR023346 Lysozyme-like domain ccrud_RS04495 1425583b8f6171877042111ae0c732cb 374 Gene3D G3DSA:1.10.530.10 273 373 1.0E-37 T 14-09-2016 ccrud_RS04495 1425583b8f6171877042111ae0c732cb 374 SMART SM01208 212 290 1.2E-17 T 14-09-2016 IPR011098 G5 domain ccrud_RS04495 1425583b8f6171877042111ae0c732cb 374 Pfam PF03990 Domain of unknown function (DUF348) 45 85 6.8E-13 T 14-09-2016 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- ccrud_RS04495 1425583b8f6171877042111ae0c732cb 374 Pfam PF03990 Domain of unknown function (DUF348) 159 197 3.6E-5 T 14-09-2016 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- ccrud_RS04495 1425583b8f6171877042111ae0c732cb 374 Pfam PF06737 Transglycosylase-like domain 292 367 2.3E-32 T 14-09-2016 IPR010618 Transglycosylase-like ccrud_RS04495 1425583b8f6171877042111ae0c732cb 374 Pfam PF07501 G5 domain 216 289 3.3E-16 T 14-09-2016 IPR011098 G5 domain ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 Pfam PF07690 Major Facilitator Superfamily 43 434 7.5E-54 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 PANTHER PTHR23501 31 531 1.1E-171 T 14-09-2016 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 SUPERFAMILY SSF103473 272 444 2.22E-74 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 SUPERFAMILY SSF103473 24 219 2.22E-74 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 SUPERFAMILY SSF103473 501 531 2.22E-74 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 39 524 2.1E-84 T 14-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 PANTHER PTHR23501:SF73 31 531 1.1E-171 T 14-09-2016 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 Gene3D G3DSA:1.20.1250.20 284 454 4.5E-24 T 14-09-2016 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 Gene3D G3DSA:1.20.1250.20 507 532 4.5E-24 T 14-09-2016 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 Gene3D G3DSA:1.20.1250.20 33 215 1.5E-35 T 14-09-2016 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 PRINTS PR01036 Tetracycline resistance protein TetB signature 226 244 1.8E-10 T 14-09-2016 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 PRINTS PR01036 Tetracycline resistance protein TetB signature 131 151 1.8E-10 T 14-09-2016 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 PRINTS PR01036 Tetracycline resistance protein TetB signature 41 65 1.8E-10 T 14-09-2016 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 PRINTS PR01036 Tetracycline resistance protein TetB signature 161 185 1.8E-10 T 14-09-2016 ccrud_RS02050 a9ba38be2a5013de4f5436acd1ef94a0 536 PRINTS PR01036 Tetracycline resistance protein TetB signature 425 444 1.8E-10 T 14-09-2016 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 SUPERFAMILY SSF52540 161 345 2.27E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 Pfam PF01018 GTP1/OBG 4 157 2.0E-53 T 14-09-2016 IPR006169 GTP1/OBG domain GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PANTHER PTHR11702:SF3 463 494 1.3E-135 T 14-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 ProSitePatterns PS00905 GTP1/OBG family signature. 212 225 - T 14-09-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 Pfam PF01926 50S ribosome-binding GTPase 161 293 1.4E-22 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 Gene3D G3DSA:3.40.50.300 156 355 8.4E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 Pfam PF09269 Domain of unknown function (DUF1967) 372 441 5.4E-23 T 14-09-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 7.0E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 7.0E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 7.0E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 7.0E-34 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 Gene3D G3DSA:2.70.210.12 4 155 1.7E-51 T 14-09-2016 IPR006169 GTP1/OBG domain GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PANTHER PTHR11702 430 443 1.3E-135 T 14-09-2016 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 Hamap MF_01454 GTPase Obg [obg]. 3 341 44.363 T 14-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 372 442 4.8E-24 T 14-09-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PANTHER PTHR11702:SF3 430 443 1.3E-135 T 14-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PANTHER PTHR11702:SF3 1 349 1.3E-135 T 14-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PANTHER PTHR11702 463 494 1.3E-135 T 14-09-2016 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 4 340 4.0E-128 T 14-09-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 SUPERFAMILY SSF82051 4 157 1.7E-48 T 14-09-2016 IPR006169 GTP1/OBG domain GO:0005525 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 PANTHER PTHR11702 1 349 1.3E-135 T 14-09-2016 ccrud_RS10485 1307d5cbf20368d5310ce7bd26fd6346 502 SUPERFAMILY SSF102741 372 443 6.02E-19 T 14-09-2016 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 ccrud_RS09680 eab05cad31ec8aede312772e115004d7 390 Pfam PF13556 PucR C-terminal helix-turn-helix domain 323 380 1.1E-15 T 14-09-2016 IPR025736 PucR C-terminal helix-turn-helix domain ccrud_RS09680 eab05cad31ec8aede312772e115004d7 390 SUPERFAMILY SSF46689 296 358 1.13E-6 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS09680 eab05cad31ec8aede312772e115004d7 390 Gene3D G3DSA:1.10.10.60 332 358 3.2E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS05150 0c42006b4a70b77f34879a7177b460ca 359 PANTHER PTHR11601 1 358 5.0E-114 T 14-09-2016 ccrud_RS05150 0c42006b4a70b77f34879a7177b460ca 359 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 184 203 - T 14-09-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site ccrud_RS05150 0c42006b4a70b77f34879a7177b460ca 359 Pfam PF00266 Aminotransferase class-V 3 341 1.8E-59 T 14-09-2016 IPR000192 Aminotransferase class V domain ccrud_RS05150 0c42006b4a70b77f34879a7177b460ca 359 Gene3D G3DSA:3.90.1150.10 237 351 1.1E-26 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS05150 0c42006b4a70b77f34879a7177b460ca 359 PIRSF PIRSF005572 1 358 5.8E-99 T 14-09-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 ccrud_RS05150 0c42006b4a70b77f34879a7177b460ca 359 PANTHER PTHR11601:SF45 1 358 5.0E-114 T 14-09-2016 ccrud_RS05150 0c42006b4a70b77f34879a7177b460ca 359 Gene3D G3DSA:3.40.640.10 14 236 3.3E-72 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS05150 0c42006b4a70b77f34879a7177b460ca 359 SUPERFAMILY SSF53383 1 353 1.88E-78 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS02375 cec825c621938900f293ae47bf6e3e2c 316 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 7 305 48.747 T 14-09-2016 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501|UniPathway: UPA00564 ccrud_RS02375 cec825c621938900f293ae47bf6e3e2c 316 SMART SM01130 13 304 4.2E-68 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS02375 cec825c621938900f293ae47bf6e3e2c 316 Gene3D G3DSA:3.20.20.70 15 302 7.4E-73 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS02375 cec825c621938900f293ae47bf6e3e2c 316 PANTHER PTHR12128 1 300 1.1E-111 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS02375 cec825c621938900f293ae47bf6e3e2c 316 PANTHER PTHR12128:SF19 1 300 1.1E-111 T 14-09-2016 ccrud_RS02375 cec825c621938900f293ae47bf6e3e2c 316 SUPERFAMILY SSF51569 15 301 1.99E-65 T 14-09-2016 ccrud_RS02375 cec825c621938900f293ae47bf6e3e2c 316 Pfam PF00701 Dihydrodipicolinate synthetase family 16 300 1.5E-49 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS02375 cec825c621938900f293ae47bf6e3e2c 316 PIRSF PIRSF001365 13 313 5.6E-59 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 9.1E-18 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 151 176 9.1E-18 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 238 252 9.1E-18 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 277 284 9.1E-18 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 Pfam PF14759 Reductase C-terminal 326 407 1.7E-10 T 14-09-2016 IPR028202 Reductase, C-terminal ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 1.1E-25 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 237 253 1.1E-25 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.1E-25 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 151 169 1.1E-25 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 262 284 1.1E-25 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 Gene3D G3DSA:3.30.390.30 326 411 7.8E-24 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 Gene3D G3DSA:3.50.50.60 2 113 1.5E-32 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PANTHER PTHR22912 1 391 2.2E-122 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 SUPERFAMILY SSF51905 198 340 7.7E-49 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 SUPERFAMILY SSF51905 6 168 7.7E-49 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 Gene3D G3DSA:3.50.50.60 114 316 2.5E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 PANTHER PTHR22912:SF180 1 391 2.2E-122 T 14-09-2016 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 SUPERFAMILY SSF55424 320 411 3.16E-21 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 ccrud_RS12215 b102c01d51a1a992d1f3794512c727cb 411 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 303 8.8E-60 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10455 d8364e764c8ac4470ee39da1480007f5 157 SUPERFAMILY SSF81301 7 119 6.7E-37 T 14-09-2016 ccrud_RS10455 d8364e764c8ac4470ee39da1480007f5 157 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 12 108 6.7E-31 T 14-09-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS ccrud_RS10455 d8364e764c8ac4470ee39da1480007f5 157 PANTHER PTHR21043 5 116 6.2E-33 T 14-09-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS ccrud_RS10455 d8364e764c8ac4470ee39da1480007f5 157 Gene3D G3DSA:3.30.460.10 8 111 6.2E-34 T 14-09-2016 ccrud_RS10455 d8364e764c8ac4470ee39da1480007f5 157 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 4 109 23.022 T 14-09-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS ccrud_RS10455 d8364e764c8ac4470ee39da1480007f5 157 Pfam PF02410 Ribosomal silencing factor during starvation 14 108 7.8E-23 T 14-09-2016 ccrud_RS07980 802838f5e7ed7e56e0cd9c5f777983c3 280 PANTHER PTHR11071 30 103 3.8E-49 T 14-09-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 ccrud_RS07980 802838f5e7ed7e56e0cd9c5f777983c3 280 PANTHER PTHR11071 122 276 3.8E-49 T 14-09-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 ccrud_RS07980 802838f5e7ed7e56e0cd9c5f777983c3 280 PANTHER PTHR11071:SF165 30 103 3.8E-49 T 14-09-2016 ccrud_RS07980 802838f5e7ed7e56e0cd9c5f777983c3 280 PANTHER PTHR11071:SF165 122 276 3.8E-49 T 14-09-2016 ccrud_RS07980 802838f5e7ed7e56e0cd9c5f777983c3 280 Gene3D G3DSA:2.40.100.10 117 279 5.5E-34 T 14-09-2016 IPR029000 Cyclophilin-like domain ccrud_RS07980 802838f5e7ed7e56e0cd9c5f777983c3 280 SUPERFAMILY SSF50891 119 279 8.77E-35 T 14-09-2016 IPR029000 Cyclophilin-like domain ccrud_RS07980 802838f5e7ed7e56e0cd9c5f777983c3 280 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 120 279 6.1E-27 T 14-09-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 Gene3D G3DSA:3.30.300.10 15 149 2.5E-42 T 14-09-2016 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 SUPERFAMILY SSF55973 8 113 4.71E-43 T 14-09-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 Gene3D G3DSA:3.30.300.10 263 405 2.8E-66 T 14-09-2016 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 9 104 1.7E-39 T 14-09-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 Gene3D G3DSA:3.30.300.10 150 251 7.0E-39 T 14-09-2016 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 278 286 - T 14-09-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 252 392 3.0E-65 T 14-09-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 SUPERFAMILY SSF55973 252 406 3.69E-65 T 14-09-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 Pfam PF02772 S-adenosylmethionine synthetase, central domain 129 250 1.2E-42 T 14-09-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 9 403 8.8E-163 T 14-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 6 404 54.239 T 14-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 130 140 - T 14-09-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 PANTHER PTHR11964 9 399 4.1E-231 T 14-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 SUPERFAMILY SSF55973 126 251 4.32E-44 T 14-09-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS07750 d1614a2c76f196e068eca5ccac9b80d7 407 PIRSF PIRSF000497 2 405 4.8E-162 T 14-09-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 ccrud_RS00865 ae2b7835ed672c14584ed628fffeb3f5 453 SUPERFAMILY SSF103473 246 443 3.53E-52 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS00865 ae2b7835ed672c14584ed628fffeb3f5 453 SUPERFAMILY SSF103473 11 200 3.53E-52 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS00865 ae2b7835ed672c14584ed628fffeb3f5 453 Gene3D G3DSA:1.20.1250.20 272 444 8.4E-13 T 14-09-2016 ccrud_RS00865 ae2b7835ed672c14584ed628fffeb3f5 453 PANTHER PTHR23501 10 416 2.3E-89 T 14-09-2016 ccrud_RS00865 ae2b7835ed672c14584ed628fffeb3f5 453 PANTHER PTHR23501:SF1 10 416 2.3E-89 T 14-09-2016 ccrud_RS00865 ae2b7835ed672c14584ed628fffeb3f5 453 Pfam PF07690 Major Facilitator Superfamily 17 406 6.4E-39 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS00865 ae2b7835ed672c14584ed628fffeb3f5 453 Gene3D G3DSA:1.20.1250.20 12 189 3.5E-26 T 14-09-2016 ccrud_RS09315 40390e03950032e356914476351c737b 401 PANTHER PTHR30519 196 401 9.0E-22 T 14-09-2016 ccrud_RS09315 40390e03950032e356914476351c737b 401 PANTHER PTHR30519 1 150 9.0E-22 T 14-09-2016 ccrud_RS09315 40390e03950032e356914476351c737b 401 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 186 393 8.1E-7 T 14-09-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 ccrud_RS09315 40390e03950032e356914476351c737b 401 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 8 64 2.3E-6 T 14-09-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 ccrud_RS09315 40390e03950032e356914476351c737b 401 SUPERFAMILY SSF51726 8 88 4.32E-53 T 14-09-2016 ccrud_RS09315 40390e03950032e356914476351c737b 401 SUPERFAMILY SSF51726 124 400 4.32E-53 T 14-09-2016 ccrud_RS09315 40390e03950032e356914476351c737b 401 Gene3D G3DSA:3.20.20.210 126 400 6.3E-79 T 14-09-2016 ccrud_RS09315 40390e03950032e356914476351c737b 401 Gene3D G3DSA:3.20.20.210 5 90 6.3E-79 T 14-09-2016 ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 SUPERFAMILY SSF53474 5 138 3.81E-43 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 SUPERFAMILY SSF53474 182 252 3.81E-43 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 Pfam PF02566 OsmC-like protein 297 388 9.1E-7 T 14-09-2016 IPR003718 OsmC/Ohr family ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 Pfam PF12146 Serine aminopeptidase, S33 47 139 2.1E-11 T 14-09-2016 IPR022742 Serine aminopeptidase, S33 ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 Gene3D G3DSA:3.40.50.1820 5 136 1.6E-38 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 Gene3D G3DSA:3.40.50.1820 180 251 1.6E-38 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 PANTHER PTHR11614 6 274 1.0E-70 T 14-09-2016 ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 Gene3D G3DSA:3.30.300.20 271 388 1.9E-12 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 PANTHER PTHR11614:SF108 6 274 1.0E-70 T 14-09-2016 ccrud_RS06960 881c46a1f9e79cf305625e4696aced00 393 SUPERFAMILY SSF82784 276 389 3.6E-13 T 14-09-2016 IPR003718 OsmC/Ohr family ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 12 481 58.458 T 14-09-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 Gene3D G3DSA:3.30.499.10 11 168 6.3E-23 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 SUPERFAMILY SSF53732 9 479 4.71E-161 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 ProSitePatterns PS00450 Aconitase family signature 1. 355 371 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PRINTS PR00415 Aconitase family signature 124 132 1.1E-43 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PRINTS PR00415 Aconitase family signature 225 238 1.1E-43 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PRINTS PR00415 Aconitase family signature 359 370 1.1E-43 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PRINTS PR00415 Aconitase family signature 415 428 1.1E-43 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PRINTS PR00415 Aconitase family signature 135 148 1.1E-43 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PRINTS PR00415 Aconitase family signature 149 164 1.1E-43 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PRINTS PR00415 Aconitase family signature 211 224 1.1E-43 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PRINTS PR00415 Aconitase family signature 98 111 1.1E-43 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PRINTS PR00415 Aconitase family signature 302 316 1.1E-43 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 Gene3D G3DSA:3.40.1060.10 169 305 6.7E-41 T 14-09-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 ProSitePatterns PS01244 Aconitase family signature 2. 415 428 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 Pfam PF00330 Aconitase family (aconitate hydratase) 18 473 4.5E-151 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 Gene3D G3DSA:3.30.499.10 344 480 1.0E-57 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PANTHER PTHR11670:SF38 15 323 1.8E-249 T 14-09-2016 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PANTHER PTHR11670:SF38 343 475 1.8E-249 T 14-09-2016 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PANTHER PTHR11670 15 323 1.8E-249 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 PANTHER PTHR11670 343 475 1.8E-249 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06420 b210fd7c5cc008a1b886b12315c7e0a1 481 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 15 475 3.3E-216 T 14-09-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS06895 6a199dc026e51f4416cda02a3cd98282 198 Pfam PF00005 ABC transporter 16 146 1.3E-20 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06895 6a199dc026e51f4416cda02a3cd98282 198 Gene3D G3DSA:3.40.50.300 16 193 4.7E-34 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06895 6a199dc026e51f4416cda02a3cd98282 198 PANTHER PTHR24220 19 193 6.9E-32 T 14-09-2016 ccrud_RS06895 6a199dc026e51f4416cda02a3cd98282 198 SMART SM00382 23 195 2.9E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06895 6a199dc026e51f4416cda02a3cd98282 198 SUPERFAMILY SSF52540 14 193 2.71E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13555 4d39de2a8121a21c14290084d36a9377 495 Gene3D G3DSA:3.10.630.10 1 207 4.9E-117 T 14-09-2016 ccrud_RS13555 4d39de2a8121a21c14290084d36a9377 495 Gene3D G3DSA:3.10.630.10 253 282 4.9E-117 T 14-09-2016 ccrud_RS13555 4d39de2a8121a21c14290084d36a9377 495 Hamap MF_01567 UPF0371 protein . 1 495 60.435 T 14-09-2016 IPR014999 Uncharacterised protein family UPF0371 ccrud_RS13555 4d39de2a8121a21c14290084d36a9377 495 PIRSF PIRSF033132 1 495 1.2E-271 T 14-09-2016 IPR014999 Uncharacterised protein family UPF0371 ccrud_RS13555 4d39de2a8121a21c14290084d36a9377 495 Pfam PF08903 Domain of unknown function (DUF1846) 4 492 3.0E-235 T 14-09-2016 IPR014999 Uncharacterised protein family UPF0371 ccrud_RS13555 4d39de2a8121a21c14290084d36a9377 495 Gene3D G3DSA:1.20.1570.10 208 246 3.1E-45 T 14-09-2016 ccrud_RS13555 4d39de2a8121a21c14290084d36a9377 495 Gene3D G3DSA:1.20.1570.10 283 339 3.1E-45 T 14-09-2016 ccrud_RS13135 b81b362223e2d2dfd6c88762166b6b47 159 PANTHER PTHR14969 31 157 4.0E-26 T 14-09-2016 ccrud_RS13135 b81b362223e2d2dfd6c88762166b6b47 159 SUPERFAMILY SSF48317 1 157 6.28E-39 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS13135 b81b362223e2d2dfd6c88762166b6b47 159 Pfam PF01569 PAP2 superfamily 51 155 1.4E-25 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS13135 b81b362223e2d2dfd6c88762166b6b47 159 Gene3D G3DSA:1.20.144.10 30 155 5.8E-32 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS13135 b81b362223e2d2dfd6c88762166b6b47 159 SMART SM00014 42 150 7.1E-28 T 14-09-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 Gene3D G3DSA:3.50.50.60 3 242 5.7E-70 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 Gene3D G3DSA:3.50.50.60 407 467 5.7E-70 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 SUPERFAMILY SSF56425 267 403 1.49E-21 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 SUPERFAMILY SSF51905 410 467 6.2E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 SUPERFAMILY SSF51905 2 253 6.2E-46 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 Gene3D G3DSA:3.90.700.10 269 402 1.5E-24 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 PANTHER PTHR11632:SF59 4 447 6.9E-57 T 14-09-2016 ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 PANTHER PTHR11632 4 447 6.9E-57 T 14-09-2016 ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 Pfam PF00890 FAD binding domain 6 452 1.3E-57 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.2E-7 T 14-09-2016 ccrud_RS00435 178a7b5c64a80e736f9a1f54b309953c 479 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 427 442 1.2E-7 T 14-09-2016 ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 PANTHER PTHR24220:SF549 2 255 9.8E-128 T 14-09-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 Gene3D G3DSA:3.30.70.260 237 328 1.6E-11 T 14-09-2016 ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 Pfam PF09383 NIL domain 282 325 9.9E-8 T 14-09-2016 IPR018449 NIL domain ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 SUPERFAMILY SSF55021 282 333 5.31E-8 T 14-09-2016 ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 SUPERFAMILY SSF52540 2 240 1.86E-83 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 Pfam PF00005 ABC transporter 21 169 1.6E-36 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 PANTHER PTHR24220 2 255 9.8E-128 T 14-09-2016 ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 SMART SM00930 261 334 6.6E-5 T 14-09-2016 IPR018449 NIL domain ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 SMART SM00382 30 218 1.1E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS03215 80708bc397f7f89de9a82f379cc1f78c 336 Gene3D G3DSA:3.40.50.300 1 236 1.4E-87 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 Gene3D G3DSA:2.60.260.20 241 284 1.4E-19 T 14-09-2016 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 Gene3D G3DSA:2.60.260.20 133 172 1.4E-19 T 14-09-2016 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 Gene3D G3DSA:1.10.287.110 4 92 9.3E-30 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 Pfam PF00684 DnaJ central domain 178 237 1.8E-10 T 14-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 7 390 36.123 T 14-09-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 Pfam PF01556 DnaJ C terminal domain 151 361 6.6E-35 T 14-09-2016 IPR002939 Chaperone DnaJ, C-terminal ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 PANTHER PTHR24078 8 116 1.1E-110 T 14-09-2016 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 SUPERFAMILY SSF57938 165 241 3.92E-16 T 14-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 PANTHER PTHR24078:SF190 139 381 1.1E-110 T 14-09-2016 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 10 378 1.8E-113 T 14-09-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 SMART SM00271 9 67 2.9E-25 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 SUPERFAMILY SSF46565 6 111 4.84E-29 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 Gene3D G3DSA:2.60.260.20 287 362 4.6E-17 T 14-09-2016 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 PRINTS PR00625 DnaJ domain signature 67 86 2.6E-22 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 PRINTS PR00625 DnaJ domain signature 12 30 2.6E-22 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 PRINTS PR00625 DnaJ domain signature 30 45 2.6E-22 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 PRINTS PR00625 DnaJ domain signature 47 67 2.6E-22 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 Pfam PF00226 DnaJ domain 10 72 1.2E-23 T 14-09-2016 IPR001623 DnaJ domain ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 ProSitePatterns PS00636 Nt-dnaJ domain signature. 52 71 - T 14-09-2016 IPR018253 DnaJ domain, conserved site ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 Gene3D G3DSA:2.10.230.10 173 240 1.2E-17 T 14-09-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 SUPERFAMILY SSF49493 289 370 2.88E-17 T 14-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 PANTHER PTHR24078:SF190 8 116 1.1E-110 T 14-09-2016 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 SUPERFAMILY SSF49493 144 183 1.05E-16 T 14-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 SUPERFAMILY SSF49493 243 289 1.05E-16 T 14-09-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 ccrud_RS12600 6c27adfbe8b78cc01832889f17434037 395 PANTHER PTHR24078 139 381 1.1E-110 T 14-09-2016 ccrud_RS10205 380c9b27688b2198e2ce51f0cf639c53 425 Pfam PF05525 Branched-chain amino acid transport protein 2 408 1.5E-133 T 14-09-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 ccrud_RS10205 380c9b27688b2198e2ce51f0cf639c53 425 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 10 396 4.3E-98 T 14-09-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 ccrud_RS10205 380c9b27688b2198e2ce51f0cf639c53 425 PANTHER PTHR30588:SF0 1 420 9.6E-120 T 14-09-2016 ccrud_RS10205 380c9b27688b2198e2ce51f0cf639c53 425 PANTHER PTHR30588 1 420 9.6E-120 T 14-09-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 ccrud_RS08960 f7b1eed8f224f49dcd526b6366386eee 164 Gene3D G3DSA:3.30.1320.10 2 83 4.7E-31 T 14-09-2016 IPR023803 Ribosomal protein S16 domain ccrud_RS08960 f7b1eed8f224f49dcd526b6366386eee 164 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 22.752 T 14-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08960 f7b1eed8f224f49dcd526b6366386eee 164 SUPERFAMILY SSF54565 2 93 1.09E-31 T 14-09-2016 IPR023803 Ribosomal protein S16 domain ccrud_RS08960 f7b1eed8f224f49dcd526b6366386eee 164 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 79 4.9E-30 T 14-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08960 f7b1eed8f224f49dcd526b6366386eee 164 PANTHER PTHR12919:SF20 2 136 1.5E-42 T 14-09-2016 ccrud_RS08960 f7b1eed8f224f49dcd526b6366386eee 164 Pfam PF00886 Ribosomal protein S16 9 67 1.4E-22 T 14-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08960 f7b1eed8f224f49dcd526b6366386eee 164 PANTHER PTHR12919 2 136 1.5E-42 T 14-09-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 264 371 2.6E-26 T 14-09-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 SUPERFAMILY SSF53738 157 259 7.06E-29 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 PANTHER PTHR22573:SF28 10 458 3.7E-153 T 14-09-2016 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 Gene3D G3DSA:3.40.120.10 176 253 2.7E-30 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 Gene3D G3DSA:3.40.120.10 12 131 1.4E-32 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 376 456 8.3E-12 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 174 193 8.4E-22 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 237 252 8.4E-22 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 97 111 8.4E-22 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 208 221 8.4E-22 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 PANTHER PTHR22573 10 458 3.7E-153 T 14-09-2016 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 SUPERFAMILY SSF55957 371 458 3.66E-18 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 12 126 1.9E-32 T 14-09-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 Gene3D G3DSA:3.30.310.50 373 457 1.5E-20 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 Gene3D G3DSA:3.40.120.10 254 371 1.1E-36 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 SUPERFAMILY SSF53738 263 367 1.06E-28 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 SUPERFAMILY SSF53738 10 126 1.1E-33 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03635 cf1e737f66df3f307478b29972210fc8 458 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 158 257 6.8E-23 T 14-09-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 PRINTS PR00145 Argininosuccinate lyase family signature 188 210 2.5E-5 T 14-09-2016 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 PRINTS PR00145 Argininosuccinate lyase family signature 371 387 2.5E-5 T 14-09-2016 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 PRINTS PR00145 Argininosuccinate lyase family signature 229 249 2.5E-5 T 14-09-2016 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 SUPERFAMILY SSF48557 54 508 8.98E-139 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 Gene3D G3DSA:1.10.40.30 462 512 1.9E-14 T 14-09-2016 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 ProSitePatterns PS00163 Fumarate lyases signature. 371 380 - T 14-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 Pfam PF10415 Fumarase C C-terminus 462 515 1.6E-14 T 14-09-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 PRINTS PR00149 Fumarate lyase superfamily signature 234 252 1.5E-27 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 PRINTS PR00149 Fumarate lyase superfamily signature 189 207 1.5E-27 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 PRINTS PR00149 Fumarate lyase superfamily signature 325 352 1.5E-27 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 PRINTS PR00149 Fumarate lyase superfamily signature 371 387 1.5E-27 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 57 524 8.3E-223 T 14-09-2016 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 PANTHER PTHR11444:SF25 44 525 1.5E-262 T 14-09-2016 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 Pfam PF00206 Lyase 64 396 1.1E-99 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 Gene3D G3DSA:1.10.275.10 55 193 7.2E-56 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 Gene3D G3DSA:1.20.200.10 194 457 5.1E-86 T 14-09-2016 ccrud_RS07300 961cec48db6ebfafc9fa30d98ca7f4aa 526 PANTHER PTHR11444 44 525 1.5E-262 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 SUPERFAMILY SSF69118 227 404 4.96E-38 T 14-09-2016 IPR029032 AhpD-like ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 Pfam PF02627 Carboxymuconolactone decarboxylase family 269 356 5.1E-14 T 14-09-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 TIGRFAM TIGR01926 peroxid_rel: uncharacterized peroxidase-related enzyme 233 408 1.1E-64 T 14-09-2016 IPR010195 Uncharacterised peroxidase-related ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 PANTHER PTHR35446 216 404 6.2E-34 T 14-09-2016 ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 PANTHER PTHR35446:SF2 216 404 6.2E-34 T 14-09-2016 ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 TIGRFAM TIGR04029 CMD_Avi_7170: CMD domain protein, Avi_7170 family 3 184 3.4E-68 T 14-09-2016 IPR023982 Conserved hypothetical protein CHP04029, CMD-like ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 Gene3D G3DSA:1.20.1290.10 291 404 1.7E-34 T 14-09-2016 IPR029032 AhpD-like ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 Gene3D G3DSA:1.20.1290.10 44 189 5.3E-10 T 14-09-2016 IPR029032 AhpD-like ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 SUPERFAMILY SSF69118 15 83 1.34E-14 T 14-09-2016 IPR029032 AhpD-like ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 SUPERFAMILY SSF69118 114 189 1.34E-14 T 14-09-2016 IPR029032 AhpD-like ccrud_RS10895 24137ab77b8cf8c1fc1c7e7b4d4e6d74 411 TIGRFAM TIGR04030 perox_Avi_7169: alkylhydroperoxidase domain protein, Avi_7169 family 220 404 2.5E-88 T 14-09-2016 IPR023923 Alkylhydroperoxidase domain-containing protein, Avi7169 ccrud_RS04470 2eb50277aa2e77ca11b510749ea7cbd3 278 PANTHER PTHR22981 2 277 5.2E-63 T 14-09-2016 ccrud_RS04470 2eb50277aa2e77ca11b510749ea7cbd3 278 PIRSF PIRSF000103 1 278 4.5E-47 T 14-09-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 ccrud_RS04470 2eb50277aa2e77ca11b510749ea7cbd3 278 Gene3D G3DSA:1.10.1040.10 153 276 6.9E-32 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS04470 2eb50277aa2e77ca11b510749ea7cbd3 278 SUPERFAMILY SSF51735 1 147 4.93E-22 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04470 2eb50277aa2e77ca11b510749ea7cbd3 278 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 1 147 7.7E-27 T 14-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 ccrud_RS04470 2eb50277aa2e77ca11b510749ea7cbd3 278 SUPERFAMILY SSF48179 151 274 9.86E-30 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS04470 2eb50277aa2e77ca11b510749ea7cbd3 278 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 153 269 7.0E-26 T 14-09-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 ccrud_RS04470 2eb50277aa2e77ca11b510749ea7cbd3 278 Gene3D G3DSA:3.40.50.720 1 151 4.9E-31 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13480 73fde0ec960d49fe9c64e5f11f2429dd 132 SUPERFAMILY SSF46785 2 126 9.98E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13480 73fde0ec960d49fe9c64e5f11f2429dd 132 PANTHER PTHR33169 1 132 2.0E-21 T 14-09-2016 ccrud_RS13480 73fde0ec960d49fe9c64e5f11f2429dd 132 Gene3D G3DSA:1.10.10.10 1 84 8.6E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13480 73fde0ec960d49fe9c64e5f11f2429dd 132 Pfam PF03551 Transcriptional regulator PadR-like family 2 70 8.7E-17 T 14-09-2016 IPR005149 Transcription regulator PadR, N-terminal ccrud_RS09250 9eb711fa7c52aebcd55570d45d773e90 471 SUPERFAMILY SSF52113 380 465 5.98E-11 T 14-09-2016 IPR001357 BRCT domain ccrud_RS09250 9eb711fa7c52aebcd55570d45d773e90 471 Gene3D G3DSA:3.30.420.10 116 283 1.9E-38 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS09250 9eb711fa7c52aebcd55570d45d773e90 471 SMART SM00479 117 284 5.0E-18 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III ccrud_RS09250 9eb711fa7c52aebcd55570d45d773e90 471 PANTHER PTHR30231:SF10 80 280 2.5E-43 T 14-09-2016 ccrud_RS09250 9eb711fa7c52aebcd55570d45d773e90 471 SUPERFAMILY SSF53098 117 283 4.91E-38 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS09250 9eb711fa7c52aebcd55570d45d773e90 471 Pfam PF00929 Exonuclease 119 274 6.7E-14 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III ccrud_RS09250 9eb711fa7c52aebcd55570d45d773e90 471 Gene3D G3DSA:3.40.50.10190 381 464 5.8E-10 T 14-09-2016 IPR001357 BRCT domain ccrud_RS09250 9eb711fa7c52aebcd55570d45d773e90 471 PANTHER PTHR30231 80 280 2.5E-43 T 14-09-2016 ccrud_RS09140 70841c27eb9fc77ce526ea653eba36b6 314 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 140 152 - T 14-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 ccrud_RS09140 70841c27eb9fc77ce526ea653eba36b6 314 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 8 274 16.265 T 14-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 ccrud_RS09140 70841c27eb9fc77ce526ea653eba36b6 314 PANTHER PTHR30589 1 293 2.5E-107 T 14-09-2016 ccrud_RS09140 70841c27eb9fc77ce526ea653eba36b6 314 PANTHER PTHR30589:SF0 1 293 2.5E-107 T 14-09-2016 ccrud_RS09140 70841c27eb9fc77ce526ea653eba36b6 314 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 14 268 8.1E-66 T 14-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 ccrud_RS09140 70841c27eb9fc77ce526ea653eba36b6 314 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 13 268 3.2E-48 T 14-09-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 SMART SM00342 125 207 1.3E-17 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 Gene3D G3DSA:1.10.10.60 163 207 1.6E-9 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 Pfam PF12833 Helix-turn-helix domain 135 207 2.3E-17 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 PANTHER PTHR11019 104 215 4.0E-19 T 14-09-2016 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 SUPERFAMILY SSF46689 162 209 9.41E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 Gene3D G3DSA:1.10.10.60 104 162 2.6E-7 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 SUPERFAMILY SSF46689 110 158 1.25E-5 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 PANTHER PTHR11019:SF99 104 215 4.0E-19 T 14-09-2016 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 162 203 - T 14-09-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 ccrud_RS04835 d3aac4c954b5feaed6821c5587326301 331 Gene3D G3DSA:2.60.120.10 208 273 4.3E-4 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 571 1.2E-172 T 14-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 PIRSF PIRSF003128 1 576 1.4E-155 T 14-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 Pfam PF02463 RecF/RecN/SMC N terminal domain 15 526 4.2E-13 T 14-09-2016 IPR003395 RecF/RecN/SMC, N-terminal ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 SUPERFAMILY SSF52540 1 225 4.2E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 SUPERFAMILY SSF52540 5 50 1.96E-23 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 SUPERFAMILY SSF52540 360 526 1.96E-23 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 Gene3D G3DSA:3.40.50.300 1 214 9.2E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 Gene3D G3DSA:3.40.50.300 330 523 3.6E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 PANTHER PTHR11059 261 580 1.7E-132 T 14-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 ccrud_RS06785 edc05eb1cb851e0493fca1eed00c575d 593 PANTHER PTHR11059 2 245 1.7E-132 T 14-09-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 ccrud_RS13165 f5351f11390f4bdee51c6ff44a0ce90f 278 Gene3D G3DSA:3.40.50.1000 182 278 9.4E-52 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS13165 f5351f11390f4bdee51c6ff44a0ce90f 278 Gene3D G3DSA:3.40.50.1000 8 78 9.4E-52 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS13165 f5351f11390f4bdee51c6ff44a0ce90f 278 Pfam PF08282 haloacid dehalogenase-like hydrolase 11 274 1.2E-61 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS13165 f5351f11390f4bdee51c6ff44a0ce90f 278 SUPERFAMILY SSF56784 8 278 1.55E-61 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS13165 f5351f11390f4bdee51c6ff44a0ce90f 278 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 10 247 3.6E-23 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 ccrud_RS13165 f5351f11390f4bdee51c6ff44a0ce90f 278 PANTHER PTHR10000:SF8 8 278 4.2E-58 T 14-09-2016 ccrud_RS13165 f5351f11390f4bdee51c6ff44a0ce90f 278 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 10 274 2.9E-51 T 14-09-2016 IPR000150 Cof protein GO:0016787 ccrud_RS13165 f5351f11390f4bdee51c6ff44a0ce90f 278 PANTHER PTHR10000 8 278 4.2E-58 T 14-09-2016 ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 249 1.6E-48 T 14-09-2016 ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PANTHER PTHR24322 13 141 6.8E-44 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PANTHER PTHR24322:SF328 13 141 6.8E-44 T 14-09-2016 ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PANTHER PTHR24322:SF328 158 190 6.8E-44 T 14-09-2016 ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 SUPERFAMILY SSF51735 10 251 8.77E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PANTHER PTHR24322 158 190 6.8E-44 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 Gene3D G3DSA:3.40.50.720 9 250 3.3E-66 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 9.5E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 9.5E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 9.5E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 9.5E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 9.5E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 9.5E-32 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 1.6E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.6E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS12895 5c06fa41df7bdb6ea3e3ab6e0a96e87a 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.6E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09780 706d1d4b33cf3824ceba4d3f1d912e8a 119 Pfam PF01042 Endoribonuclease L-PSP 9 116 1.3E-22 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family ccrud_RS09780 706d1d4b33cf3824ceba4d3f1d912e8a 119 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 93 111 - T 14-09-2016 IPR019897 RidA, conserved site ccrud_RS09780 706d1d4b33cf3824ceba4d3f1d912e8a 119 Gene3D G3DSA:3.30.1330.40 8 118 6.0E-31 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS09780 706d1d4b33cf3824ceba4d3f1d912e8a 119 PANTHER PTHR11803 10 119 1.6E-29 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family ccrud_RS09780 706d1d4b33cf3824ceba4d3f1d912e8a 119 SUPERFAMILY SSF55298 6 118 3.46E-30 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS00350 2c86fb23ab4a6993a006573c9848349f 218 PIRSF PIRSF006171 3 217 7.5E-63 T 14-09-2016 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0001071|GO:0003677|GO:0005737|GO:0009605 ccrud_RS00350 2c86fb23ab4a6993a006573c9848349f 218 SUPERFAMILY SSF52172 4 131 1.57E-28 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS00350 2c86fb23ab4a6993a006573c9848349f 218 Gene3D G3DSA:3.40.50.2300 3 124 3.5E-24 T 14-09-2016 ccrud_RS00350 2c86fb23ab4a6993a006573c9848349f 218 PANTHER PTHR26402:SF434 5 137 2.7E-29 T 14-09-2016 ccrud_RS00350 2c86fb23ab4a6993a006573c9848349f 218 PANTHER PTHR26402 5 137 2.7E-29 T 14-09-2016 ccrud_RS00350 2c86fb23ab4a6993a006573c9848349f 218 Gene3D G3DSA:1.10.10.10 155 214 2.3E-6 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00350 2c86fb23ab4a6993a006573c9848349f 218 SUPERFAMILY SSF46785 155 214 9.49E-7 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00350 2c86fb23ab4a6993a006573c9848349f 218 Pfam PF00072 Response regulator receiver domain 7 113 8.9E-17 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS00350 2c86fb23ab4a6993a006573c9848349f 218 SMART SM00448 5 113 4.0E-22 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS03405 d49a4750d3c529441ec6231b0ace227b 124 Pfam PF01381 Helix-turn-helix 17 74 9.2E-14 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS03405 d49a4750d3c529441ec6231b0ace227b 124 SUPERFAMILY SSF47413 12 79 3.75E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS03405 d49a4750d3c529441ec6231b0ace227b 124 SMART SM00530 16 77 1.9E-15 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS03405 d49a4750d3c529441ec6231b0ace227b 124 Gene3D G3DSA:1.10.260.40 5 91 1.1E-21 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS03405 d49a4750d3c529441ec6231b0ace227b 124 PANTHER PTHR10245 13 78 3.6E-12 T 14-09-2016 ccrud_RS08810 b17746e3a337e820234244aca2c39063 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 26.461 T 14-09-2016 IPR002661 Ribosome recycling factor GO:0006412 ccrud_RS08810 b17746e3a337e820234244aca2c39063 185 PANTHER PTHR20982 1 185 5.8E-75 T 14-09-2016 IPR002661 Ribosome recycling factor GO:0006412 ccrud_RS08810 b17746e3a337e820234244aca2c39063 185 Gene3D G3DSA:1.10.132.20 66 185 4.1E-40 T 14-09-2016 IPR023584 Ribosome recycling factor domain ccrud_RS08810 b17746e3a337e820234244aca2c39063 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 185 2.6E-62 T 14-09-2016 IPR002661 Ribosome recycling factor GO:0006412 ccrud_RS08810 b17746e3a337e820234244aca2c39063 185 SUPERFAMILY SSF55194 2 184 1.18E-67 T 14-09-2016 IPR023584 Ribosome recycling factor domain ccrud_RS08810 b17746e3a337e820234244aca2c39063 185 Pfam PF01765 Ribosome recycling factor 21 183 1.9E-59 T 14-09-2016 IPR023584 Ribosome recycling factor domain ccrud_RS11950 292f9080b4dceaa96ac72a8413ab6d64 232 SUPERFAMILY SSF51366 13 229 2.29E-46 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS11950 292f9080b4dceaa96ac72a8413ab6d64 232 PANTHER PTHR36204:SF1 4 231 2.5E-58 T 14-09-2016 ccrud_RS11950 292f9080b4dceaa96ac72a8413ab6d64 232 Gene3D G3DSA:3.20.20.70 6 231 3.2E-69 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS11950 292f9080b4dceaa96ac72a8413ab6d64 232 Pfam PF04131 Putative N-acetylmannosamine-6-phosphate epimerase 38 229 3.1E-39 T 14-09-2016 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase GO:0006051|GO:0047465 KEGG: 00520+5.1.3.9|UniPathway: UPA00629 ccrud_RS11950 292f9080b4dceaa96ac72a8413ab6d64 232 PANTHER PTHR36204 4 231 2.5E-58 T 14-09-2016 ccrud_RS09095 5e4f5adb508565c5a0c884e6c77bde89 514 SMART SM00382 337 512 2.4E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS09095 5e4f5adb508565c5a0c884e6c77bde89 514 SUPERFAMILY SSF90123 4 301 7.19E-25 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS09095 5e4f5adb508565c5a0c884e6c77bde89 514 PANTHER PTHR24222 16 510 4.7E-69 T 14-09-2016 ccrud_RS09095 5e4f5adb508565c5a0c884e6c77bde89 514 Pfam PF00005 ABC transporter 330 467 6.3E-31 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS09095 5e4f5adb508565c5a0c884e6c77bde89 514 Gene3D G3DSA:3.40.50.300 313 509 2.2E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09095 5e4f5adb508565c5a0c884e6c77bde89 514 SUPERFAMILY SSF52540 308 509 1.81E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09095 5e4f5adb508565c5a0c884e6c77bde89 514 Gene3D G3DSA:1.20.1560.10 4 300 4.9E-16 T 14-09-2016 ccrud_RS09095 5e4f5adb508565c5a0c884e6c77bde89 514 ProSitePatterns PS00211 ABC transporters family signature. 439 453 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS12505 48b07c95026b120cbce209d0b0d2db80 223 PANTHER PTHR12029 51 216 6.2E-29 T 14-09-2016 ccrud_RS12505 48b07c95026b120cbce209d0b0d2db80 223 SUPERFAMILY SSF75217 58 217 1.05E-36 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases ccrud_RS12505 48b07c95026b120cbce209d0b0d2db80 223 Pfam PF00588 SpoU rRNA Methylase family 74 210 7.1E-22 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 ccrud_RS12505 48b07c95026b120cbce209d0b0d2db80 223 Gene3D G3DSA:3.40.1280.10 55 217 2.9E-40 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ccrud_RS10375 c0639b5d33440138edb56910e1f64168 537 Pfam PF13449 Esterase-like activity of phytase 210 332 1.3E-7 T 14-09-2016 IPR027372 Phytase-like domain ccrud_RS10375 c0639b5d33440138edb56910e1f64168 537 Pfam PF00932 Lamin Tail Domain 34 140 3.2E-17 T 14-09-2016 IPR001322 Lamin Tail Domain ccrud_RS10375 c0639b5d33440138edb56910e1f64168 537 Gene3D G3DSA:2.60.40.1260 35 141 3.4E-12 T 14-09-2016 IPR001322 Lamin Tail Domain ccrud_RS10375 c0639b5d33440138edb56910e1f64168 537 Gene3D G3DSA:2.120.10.30 208 286 4.0E-4 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like ccrud_RS10375 c0639b5d33440138edb56910e1f64168 537 SUPERFAMILY SSF63825 209 441 3.14E-7 T 14-09-2016 ccrud_RS10375 c0639b5d33440138edb56910e1f64168 537 SUPERFAMILY SSF74853 32 142 9.02E-20 T 14-09-2016 IPR001322 Lamin Tail Domain ccrud_RS02295 881a090399336e993f67f7b0b2fc777b 543 PANTHER PTHR31566 2 535 1.4E-104 T 14-09-2016 ccrud_RS02295 881a090399336e993f67f7b0b2fc777b 543 PANTHER PTHR31566:SF0 2 535 1.4E-104 T 14-09-2016 ccrud_RS02295 881a090399336e993f67f7b0b2fc777b 543 Pfam PF05140 ResB-like family 19 517 5.2E-129 T 14-09-2016 IPR007816 ResB-like domain ccrud_RS09625 d99f35545f01ef4508d0d0e414275d85 196 Pfam PF00510 Cytochrome c oxidase subunit III 16 194 5.6E-31 T 14-09-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 ccrud_RS09625 d99f35545f01ef4508d0d0e414275d85 196 SUPERFAMILY SSF81452 11 194 6.67E-57 T 14-09-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 ccrud_RS09625 d99f35545f01ef4508d0d0e414275d85 196 PANTHER PTHR11403 11 195 1.3E-63 T 14-09-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 ccrud_RS09625 d99f35545f01ef4508d0d0e414275d85 196 Gene3D G3DSA:1.20.120.80 14 195 3.7E-55 T 14-09-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 ccrud_RS05345 5a0875a1d234eb18839f639d0ceae109 470 ProSitePatterns PS00218 Amino acid permeases signature. 48 78 - T 14-09-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 ccrud_RS05345 5a0875a1d234eb18839f639d0ceae109 470 PANTHER PTHR11785 18 440 5.2E-142 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 ccrud_RS05345 5a0875a1d234eb18839f639d0ceae109 470 Pfam PF00324 Amino acid permease 23 430 9.5E-91 T 14-09-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 ccrud_RS05345 5a0875a1d234eb18839f639d0ceae109 470 PIRSF PIRSF006060 1 468 1.9E-64 T 14-09-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 ccrud_RS05345 5a0875a1d234eb18839f639d0ceae109 470 PANTHER PTHR11785:SF386 18 440 5.2E-142 T 14-09-2016 ccrud_RS01155 3af9b261007618c651b6f86a925beece 140 PANTHER PTHR37309 6 129 1.1E-23 T 14-09-2016 ccrud_RS01155 3af9b261007618c651b6f86a925beece 140 PANTHER PTHR37309:SF1 6 129 1.1E-23 T 14-09-2016 ccrud_RS01155 3af9b261007618c651b6f86a925beece 140 Pfam PF04020 Mycobacterial 4 TMS phage holin, superfamily IV 6 127 4.2E-26 T 14-09-2016 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV ccrud_RS00460 b1478effd4c7dbb3076b3cefa155ad02 487 PANTHER PTHR30354:SF7 1 484 1.6E-150 T 14-09-2016 ccrud_RS00460 b1478effd4c7dbb3076b3cefa155ad02 487 Pfam PF02447 GntP family permease 6 168 2.3E-5 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 ccrud_RS00460 b1478effd4c7dbb3076b3cefa155ad02 487 PANTHER PTHR30354 1 484 1.6E-150 T 14-09-2016 ccrud_RS01955 0f54bb0abb9ec2da663490cea7a2db5d 166 PANTHER PTHR30411 11 164 4.2E-42 T 14-09-2016 ccrud_RS01955 0f54bb0abb9ec2da663490cea7a2db5d 166 SUPERFAMILY SSF55826 11 162 3.53E-36 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 ccrud_RS01955 0f54bb0abb9ec2da663490cea7a2db5d 166 PANTHER PTHR30411:SF0 11 164 4.2E-42 T 14-09-2016 ccrud_RS01955 0f54bb0abb9ec2da663490cea7a2db5d 166 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 11 163 2.6E-53 T 14-09-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC ccrud_RS01955 0f54bb0abb9ec2da663490cea7a2db5d 166 Gene3D G3DSA:3.90.960.10 7 163 9.4E-45 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 ccrud_RS01955 0f54bb0abb9ec2da663490cea7a2db5d 166 PIRSF PIRSF006181 6 166 1.8E-54 T 14-09-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC ccrud_RS01955 0f54bb0abb9ec2da663490cea7a2db5d 166 Pfam PF04073 Aminoacyl-tRNA editing domain 42 151 9.1E-22 T 14-09-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 ccrud_RS01395 562ea5a1b2e3f7c62327e321aa2d70f7 127 PANTHER PTHR34583:SF2 1 107 4.2E-21 T 14-09-2016 ccrud_RS01395 562ea5a1b2e3f7c62327e321aa2d70f7 127 PANTHER PTHR34583 1 107 4.2E-21 T 14-09-2016 ccrud_RS01395 562ea5a1b2e3f7c62327e321aa2d70f7 127 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 3 90 8.8E-26 T 14-09-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 ccrud_RS06640 a895299a68c5a73e588810da436de561 438 PANTHER PTHR30061 6 429 4.8E-104 T 14-09-2016 ccrud_RS06640 a895299a68c5a73e588810da436de561 438 Pfam PF13416 Bacterial extracellular solute-binding protein 63 373 5.7E-46 T 14-09-2016 ccrud_RS06640 a895299a68c5a73e588810da436de561 438 SUPERFAMILY SSF53850 46 427 3.54E-72 T 14-09-2016 ccrud_RS06640 a895299a68c5a73e588810da436de561 438 PANTHER PTHR30061:SF7 6 429 4.8E-104 T 14-09-2016 ccrud_RS06640 a895299a68c5a73e588810da436de561 438 Gene3D G3DSA:3.40.190.10 163 361 8.4E-41 T 14-09-2016 ccrud_RS11605 bd1beede8effd459cb4fc9cd225a3bab 355 PANTHER PTHR30425:SF1 3 353 2.9E-102 T 14-09-2016 ccrud_RS11605 bd1beede8effd459cb4fc9cd225a3bab 355 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 136 349 2.1E-14 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11605 bd1beede8effd459cb4fc9cd225a3bab 355 PANTHER PTHR30425 3 353 2.9E-102 T 14-09-2016 ccrud_RS11605 bd1beede8effd459cb4fc9cd225a3bab 355 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 51 354 2.9E-82 T 14-09-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 ccrud_RS11605 bd1beede8effd459cb4fc9cd225a3bab 355 Gene3D G3DSA:1.10.3720.10 59 354 2.1E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11605 bd1beede8effd459cb4fc9cd225a3bab 355 SUPERFAMILY SSF161098 73 345 9.35E-30 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS07655 0ac3b483336d413c2aa62ceaf372bd02 77 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 4 73 2.2E-21 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ccrud_RS07655 0ac3b483336d413c2aa62ceaf372bd02 77 PRINTS PR01651 Protein-export SecG membrane protein signature 23 37 4.7E-7 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ccrud_RS07655 0ac3b483336d413c2aa62ceaf372bd02 77 PRINTS PR01651 Protein-export SecG membrane protein signature 54 76 4.7E-7 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ccrud_RS07655 0ac3b483336d413c2aa62ceaf372bd02 77 PRINTS PR01651 Protein-export SecG membrane protein signature 3 23 4.7E-7 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ccrud_RS07655 0ac3b483336d413c2aa62ceaf372bd02 77 Pfam PF03840 Preprotein translocase SecG subunit 5 73 1.2E-19 T 14-09-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 SMART SM00345 27 85 3.4E-10 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 Gene3D G3DSA:1.20.120.530 112 246 2.8E-21 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 PANTHER PTHR11751 25 88 6.2E-15 T 14-09-2016 ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 PANTHER PTHR11751 109 131 6.2E-15 T 14-09-2016 ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 SMART SM00895 115 241 2.3E-19 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 Pfam PF07729 FCD domain 116 240 6.1E-22 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 Gene3D G3DSA:1.10.10.10 8 85 1.5E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 SUPERFAMILY SSF48008 113 246 9.68E-22 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 Pfam PF00392 Bacterial regulatory proteins, gntR family 25 85 7.2E-12 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS11355 37ab0348af90d994c6fbfd5a9f00533b 250 SUPERFAMILY SSF46785 18 89 2.5E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 98 260 3.6E-12 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 384 555 3.9E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 SUPERFAMILY SSF161098 362 548 9.03E-32 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 Gene3D G3DSA:1.10.3720.10 74 266 5.0E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 Gene3D G3DSA:1.10.3720.10 361 555 2.6E-26 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 SUPERFAMILY SSF161098 75 260 2.75E-29 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 PANTHER PTHR30043 307 557 1.9E-65 T 14-09-2016 ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 308 556 1.8E-70 T 14-09-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 25 269 2.1E-66 T 14-09-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 ccrud_RS10225 9b84dcb7f6e521bc94261bd2a4add176 557 PANTHER PTHR30043:SF1 307 557 1.9E-65 T 14-09-2016 ccrud_RS00910 e677648fb2e71754672dc1c2e783961e 366 PANTHER PTHR24220 5 318 7.3E-129 T 14-09-2016 ccrud_RS00910 e677648fb2e71754672dc1c2e783961e 366 SUPERFAMILY SSF52540 4 252 2.73E-83 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00910 e677648fb2e71754672dc1c2e783961e 366 SMART SM00382 30 219 1.4E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS00910 e677648fb2e71754672dc1c2e783961e 366 Pfam PF08402 TOBE domain 281 357 2.6E-6 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 ccrud_RS00910 e677648fb2e71754672dc1c2e783961e 366 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS00910 e677648fb2e71754672dc1c2e783961e 366 Pfam PF00005 ABC transporter 22 169 5.0E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS00910 e677648fb2e71754672dc1c2e783961e 366 SUPERFAMILY SSF50331 245 364 2.67E-10 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal ccrud_RS00910 e677648fb2e71754672dc1c2e783961e 366 PANTHER PTHR24220:SF151 5 318 7.3E-129 T 14-09-2016 ccrud_RS00910 e677648fb2e71754672dc1c2e783961e 366 Gene3D G3DSA:3.40.50.300 2 242 1.9E-77 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09500 9c8e6c32d5f72503f2af0713cac8dc4c 143 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 135 6.0E-66 T 14-09-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 ccrud_RS09500 9c8e6c32d5f72503f2af0713cac8dc4c 143 SUPERFAMILY SSF89447 1 134 1.64E-42 T 14-09-2016 ccrud_RS09500 9c8e6c32d5f72503f2af0713cac8dc4c 143 Pfam PF02381 MraZ protein, putative antitoxin-like 74 136 7.2E-19 T 14-09-2016 IPR020603 MraZ domain ccrud_RS09500 9c8e6c32d5f72503f2af0713cac8dc4c 143 Pfam PF02381 MraZ protein, putative antitoxin-like 1 70 1.7E-19 T 14-09-2016 IPR020603 MraZ domain ccrud_RS09500 9c8e6c32d5f72503f2af0713cac8dc4c 143 PANTHER PTHR34701 2 138 1.8E-50 T 14-09-2016 ccrud_RS09500 9c8e6c32d5f72503f2af0713cac8dc4c 143 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 135 1.0E-33 T 14-09-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 ccrud_RS09500 9c8e6c32d5f72503f2af0713cac8dc4c 143 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 143 49.436 T 14-09-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 ccrud_RS03805 5aa7401185bb0f52d94e7666834f20c6 162 PANTHER PTHR30399 3 156 1.4E-21 T 14-09-2016 ccrud_RS03805 5aa7401185bb0f52d94e7666834f20c6 162 Pfam PF01863 Protein of unknown function DUF45 87 151 7.1E-16 T 14-09-2016 IPR002725 Protein of unknown function DUF45 ccrud_RS03805 5aa7401185bb0f52d94e7666834f20c6 162 PANTHER PTHR30399:SF3 3 156 1.4E-21 T 14-09-2016 ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 PANTHER PTHR12592 4 197 1.0E-56 T 14-09-2016 ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 PANTHER PTHR12592 257 574 1.0E-56 T 14-09-2016 ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 277 570 17.145 T 14-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 SUPERFAMILY SSF64153 4 225 3.27E-41 T 14-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 Gene3D G3DSA:3.40.1190.20 287 566 8.8E-68 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 Gene3D G3DSA:3.40.50.10260 1 225 2.5E-46 T 14-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 Pfam PF01256 Carbohydrate kinase 300 545 1.7E-43 T 14-09-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 Pfam PF03853 YjeF-related protein N-terminus 25 207 2.3E-39 T 14-09-2016 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 SUPERFAMILY SSF53613 279 566 2.77E-49 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 PANTHER PTHR12592:SF0 4 197 1.0E-56 T 14-09-2016 ccrud_RS03035 0124c0f716753c9e1a208601f3af1c3b 574 PANTHER PTHR12592:SF0 257 574 1.0E-56 T 14-09-2016 ccrud_RS11315 e68a781e986ff0b2e54f1050fcb89b56 446 PIRSF PIRSF000484 7 437 4.0E-103 T 14-09-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 ccrud_RS11315 e68a781e986ff0b2e54f1050fcb89b56 446 SUPERFAMILY SSF54675 12 139 3.03E-37 T 14-09-2016 ccrud_RS11315 e68a781e986ff0b2e54f1050fcb89b56 446 TIGRFAM TIGR01513 NAPRTase_put: nicotinate phosphoribosyltransferase 15 430 6.3E-128 T 14-09-2016 IPR006405 Nicotinate phosphoribosyltransferase pncB-type GO:0004516|GO:0019358 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 ccrud_RS11315 e68a781e986ff0b2e54f1050fcb89b56 446 Gene3D G3DSA:3.20.140.10 8 380 1.3E-94 T 14-09-2016 ccrud_RS11315 e68a781e986ff0b2e54f1050fcb89b56 446 SUPERFAMILY SSF51690 142 434 1.47E-85 T 14-09-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 ccrud_RS11315 e68a781e986ff0b2e54f1050fcb89b56 446 PANTHER PTHR11098 13 435 2.3E-190 T 14-09-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 ccrud_RS11315 e68a781e986ff0b2e54f1050fcb89b56 446 PANTHER PTHR11098:SF8 13 435 2.3E-190 T 14-09-2016 ccrud_RS11315 e68a781e986ff0b2e54f1050fcb89b56 446 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 159 348 1.4E-8 T 14-09-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 ccrud_RS05835 af41e22ce4d2a61c4d6dd06518bd631e 271 Hamap MF_01416 ATP synthase subunit delta [atpD]. 97 271 11.295 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 ccrud_RS05835 af41e22ce4d2a61c4d6dd06518bd631e 271 ProSitePatterns PS00389 ATP synthase delta (OSCP) subunit signature. 232 251 - T 14-09-2016 IPR020781 ATPase, OSCP/delta subunit, conserved site GO:0015986|GO:0016020|GO:0046933 ccrud_RS05835 af41e22ce4d2a61c4d6dd06518bd631e 271 PANTHER PTHR11910:SF1 109 267 7.4E-23 T 14-09-2016 ccrud_RS05835 af41e22ce4d2a61c4d6dd06518bd631e 271 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 108 267 3.0E-21 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 ccrud_RS05835 af41e22ce4d2a61c4d6dd06518bd631e 271 Pfam PF00213 ATP synthase delta (OSCP) subunit 108 269 5.8E-29 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 ccrud_RS05835 af41e22ce4d2a61c4d6dd06518bd631e 271 PRINTS PR00125 ATP synthase delta subunit signature 245 263 1.6E-9 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 ccrud_RS05835 af41e22ce4d2a61c4d6dd06518bd631e 271 PRINTS PR00125 ATP synthase delta subunit signature 230 245 1.6E-9 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 ccrud_RS05835 af41e22ce4d2a61c4d6dd06518bd631e 271 PANTHER PTHR11910 109 267 7.4E-23 T 14-09-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 SUPERFAMILY SSF52540 295 533 6.71E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 SMART SM00382 331 519 2.0E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 SMART SM00382 47 238 2.1E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 PANTHER PTHR24220:SF459 322 436 3.4E-95 T 14-09-2016 ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 Gene3D G3DSA:3.40.50.300 304 531 3.7E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 PANTHER PTHR24220 322 436 3.4E-95 T 14-09-2016 ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 Pfam PF00005 ABC transporter 39 189 1.3E-24 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 Pfam PF00005 ABC transporter 323 470 2.3E-18 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 PANTHER PTHR24220:SF459 18 305 3.4E-95 T 14-09-2016 ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 PANTHER PTHR24220 18 305 3.4E-95 T 14-09-2016 ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 Gene3D G3DSA:3.40.50.300 9 252 4.9E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02730 1e575886b76242aeb71069a1a0cfff92 569 SUPERFAMILY SSF52540 15 253 6.41E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06365 5c3eac8b07ea90fcf10d12adba8b924b 378 PANTHER PTHR11799 137 303 1.2E-14 T 14-09-2016 ccrud_RS06365 5c3eac8b07ea90fcf10d12adba8b924b 378 SUPERFAMILY SSF63829 56 370 2.81E-29 T 14-09-2016 ccrud_RS06365 5c3eac8b07ea90fcf10d12adba8b924b 378 Gene3D G3DSA:2.120.10.30 55 373 3.2E-38 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like ccrud_RS02670 c221f2e0b9b4e454e0dfc7f0a6bd308d 191 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 6 184 42.041 T 14-09-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02670 c221f2e0b9b4e454e0dfc7f0a6bd308d 191 Pfam PF00281 Ribosomal protein L5 29 85 2.6E-26 T 14-09-2016 IPR031310 Ribosomal protein L5, N-terminal ccrud_RS02670 c221f2e0b9b4e454e0dfc7f0a6bd308d 191 Pfam PF00673 ribosomal L5P family C-terminus 89 182 3.9E-39 T 14-09-2016 IPR031309 Ribosomal protein L5, C-terminal ccrud_RS02670 c221f2e0b9b4e454e0dfc7f0a6bd308d 191 PIRSF PIRSF002161 2 190 6.0E-62 T 14-09-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02670 c221f2e0b9b4e454e0dfc7f0a6bd308d 191 Gene3D G3DSA:3.30.1440.10 7 183 1.4E-73 T 14-09-2016 IPR022803 Ribosomal protein L5 domain ccrud_RS02670 c221f2e0b9b4e454e0dfc7f0a6bd308d 191 PANTHER PTHR11994 1 183 7.3E-87 T 14-09-2016 ccrud_RS02670 c221f2e0b9b4e454e0dfc7f0a6bd308d 191 SUPERFAMILY SSF55282 8 183 2.59E-72 T 14-09-2016 IPR022803 Ribosomal protein L5 domain ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 SUPERFAMILY SSF81593 885 1034 2.9E-33 T 14-09-2016 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 SUPERFAMILY SSF81301 600 878 1.44E-65 T 14-09-2016 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 628 870 2.4E-72 T 14-09-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 213 352 2.5E-32 T 14-09-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 93 1025 16.568 T 14-09-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 SUPERFAMILY SSF81593 370 523 1.73E-34 T 14-09-2016 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 PANTHER PTHR30621 8 132 1.5E-235 T 14-09-2016 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 PANTHER PTHR30621 153 1042 1.5E-235 T 14-09-2016 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 Gene3D G3DSA:3.30.460.10 217 363 5.3E-45 T 14-09-2016 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 Gene3D G3DSA:3.30.460.10 714 878 6.3E-51 T 14-09-2016 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 SUPERFAMILY SSF81301 174 363 5.23E-55 T 14-09-2016 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 SUPERFAMILY SSF81301 79 144 5.23E-55 T 14-09-2016 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 Pfam PF08335 GlnD PII-uridylyltransferase 891 1032 7.4E-20 T 14-09-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 ccrud_RS09810 d77d62301136e1f835445ccd99f49e9f 1045 Pfam PF08335 GlnD PII-uridylyltransferase 376 523 6.0E-35 T 14-09-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 ccrud_RS02420 574ce1a5cc3ac8049d378a1020b51b54 211 SUPERFAMILY SSF52317 47 204 1.27E-19 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS02420 574ce1a5cc3ac8049d378a1020b51b54 211 PANTHER PTHR20842 30 205 6.7E-27 T 14-09-2016 ccrud_RS02420 574ce1a5cc3ac8049d378a1020b51b54 211 PANTHER PTHR20842:SF0 30 205 6.7E-27 T 14-09-2016 ccrud_RS02420 574ce1a5cc3ac8049d378a1020b51b54 211 Gene3D G3DSA:3.40.50.880 11 210 4.2E-38 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS02420 574ce1a5cc3ac8049d378a1020b51b54 211 Pfam PF03575 Peptidase family S51 21 211 4.6E-49 T 14-09-2016 IPR005320 Peptidase S51 GO:0006508|GO:0008236 ccrud_RS03165 1d64b56d1a0276df800b54ceb76d258d 730 SUPERFAMILY SSF82866 505 716 9.94E-35 T 14-09-2016 ccrud_RS03165 1d64b56d1a0276df800b54ceb76d258d 730 PANTHER PTHR33406:SF2 6 719 5.7E-138 T 14-09-2016 ccrud_RS03165 1d64b56d1a0276df800b54ceb76d258d 730 Pfam PF03176 MMPL family 486 718 1.4E-54 T 14-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 ccrud_RS03165 1d64b56d1a0276df800b54ceb76d258d 730 Pfam PF03176 MMPL family 61 380 1.3E-60 T 14-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 ccrud_RS03165 1d64b56d1a0276df800b54ceb76d258d 730 SUPERFAMILY SSF82866 118 345 8.63E-35 T 14-09-2016 ccrud_RS03165 1d64b56d1a0276df800b54ceb76d258d 730 Gene3D G3DSA:1.20.1640.10 508 718 2.6E-26 T 14-09-2016 ccrud_RS03165 1d64b56d1a0276df800b54ceb76d258d 730 Gene3D G3DSA:1.20.1640.10 138 349 4.8E-31 T 14-09-2016 ccrud_RS03165 1d64b56d1a0276df800b54ceb76d258d 730 PANTHER PTHR33406 6 719 5.7E-138 T 14-09-2016 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 9 263 9.6E-75 T 14-09-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 272 461 1.3E-61 T 14-09-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 Hamap MF_00186 Glycerol kinase [glpK]. 7 509 53.443 T 14-09-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 PIRSF PIRSF000538 7 508 7.0E-158 T 14-09-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 PANTHER PTHR10196 4 507 4.6E-245 T 14-09-2016 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 PANTHER PTHR10196:SF69 4 507 4.6E-245 T 14-09-2016 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 Gene3D G3DSA:3.30.420.40 267 506 1.4E-93 T 14-09-2016 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 374 394 - T 14-09-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 SUPERFAMILY SSF53067 266 507 3.24E-76 T 14-09-2016 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 Gene3D G3DSA:3.30.420.40 7 264 3.2E-102 T 14-09-2016 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 9 506 1.9E-219 T 14-09-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 ccrud_RS13160 7cfff32df171336f74f7a8c62e992867 509 SUPERFAMILY SSF53067 9 265 2.51E-90 T 14-09-2016 ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 SUPERFAMILY SSF55326 16 151 1.01E-29 T 14-09-2016 ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 Pfam PF02769 AIR synthase related protein, C-terminal domain 165 257 2.8E-6 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 20 328 3.2E-67 T 14-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 PANTHER PTHR30270:SF0 3 288 4.0E-70 T 14-09-2016 ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 19 325 29.032 T 14-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 SUPERFAMILY SSF56042 160 306 1.94E-24 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 PANTHER PTHR30270 3 288 4.0E-70 T 14-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 Gene3D G3DSA:3.30.1330.10 15 152 8.2E-40 T 14-09-2016 IPR016188 PurM-like, N-terminal domain ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 Pfam PF00586 AIR synthase related protein, N-terminal domain 39 151 6.6E-21 T 14-09-2016 IPR016188 PurM-like, N-terminal domain ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 Gene3D G3DSA:3.90.650.10 163 328 1.1E-34 T 14-09-2016 IPR010918 AIR synthase-related protein, C-terminal domain ccrud_RS06460 ab75bad37ce6d68b7852655b3feb7ed5 328 PIRSF PIRSF005303 15 328 1.6E-73 T 14-09-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 ccrud_RS01995 5eb656b1882c72b030aac292fcd48b7f 347 PANTHER PTHR30015 35 336 3.7E-18 T 14-09-2016 ccrud_RS01995 5eb656b1882c72b030aac292fcd48b7f 347 PANTHER PTHR30015:SF0 35 336 3.7E-18 T 14-09-2016 ccrud_RS01995 5eb656b1882c72b030aac292fcd48b7f 347 SUPERFAMILY SSF52980 211 323 5.63E-10 T 14-09-2016 IPR011335 Restriction endonuclease type II-like ccrud_RS01995 5eb656b1882c72b030aac292fcd48b7f 347 Pfam PF04471 Restriction endonuclease 208 319 1.2E-22 T 14-09-2016 IPR007560 Restriction endonuclease type IV, Mrr GO:0003677|GO:0004519|GO:0009307 ccrud_RS01995 5eb656b1882c72b030aac292fcd48b7f 347 Gene3D G3DSA:3.40.1350.10 209 321 5.5E-11 T 14-09-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 ccrud_RS05350 d9ab3067207d15f51673a030e42d5334 316 Gene3D G3DSA:2.160.10.10 161 288 6.0E-21 T 14-09-2016 ccrud_RS05350 d9ab3067207d15f51673a030e42d5334 316 SUPERFAMILY SSF51161 84 281 4.98E-22 T 14-09-2016 IPR011004 Trimeric LpxA-like ccrud_RS05350 d9ab3067207d15f51673a030e42d5334 316 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 241 274 5.0E-12 T 14-09-2016 IPR001451 Hexapeptide repeat ccrud_RS05350 d9ab3067207d15f51673a030e42d5334 316 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 120 159 2.4E-15 T 14-09-2016 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117|UniPathway: UPA00034 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 418 2.2E-114 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 38 48 - T 14-09-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 SUPERFAMILY SSF52374 1 321 2.08E-96 T 14-09-2016 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 Pfam PF00579 tRNA synthetases class I (W and Y) 27 321 2.7E-85 T 14-09-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 Gene3D G3DSA:3.40.50.620 2 229 1.5E-90 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 Gene3D G3DSA:3.10.290.10 315 418 5.1E-30 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 PANTHER PTHR11766:SF0 1 419 1.7E-188 T 14-09-2016 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 213 225 7.4E-29 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 42 64 7.4E-29 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 180 202 7.4E-29 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 159 174 7.4E-29 T 14-09-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 1 418 43.593 T 14-09-2016 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 Gene3D G3DSA:1.10.240.10 230 314 2.2E-37 T 14-09-2016 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 PANTHER PTHR11766 1 419 1.7E-188 T 14-09-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 ccrud_RS06745 f65c36c21171455b32722ce8e1b48c3a 420 SUPERFAMILY SSF55174 325 416 2.83E-16 T 14-09-2016 ccrud_RS02605 a384e979f01b4de71671d04f5cea1858 218 Gene3D G3DSA:4.10.960.10 81 162 1.5E-31 T 14-09-2016 ccrud_RS02605 a384e979f01b4de71671d04f5cea1858 218 Pfam PF00297 Ribosomal protein L3 104 187 3.0E-15 T 14-09-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02605 a384e979f01b4de71671d04f5cea1858 218 SUPERFAMILY SSF50447 6 214 2.47E-79 T 14-09-2016 IPR009000 Translation protein, beta-barrel domain ccrud_RS02605 a384e979f01b4de71671d04f5cea1858 218 PANTHER PTHR11229 8 216 3.5E-103 T 14-09-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02605 a384e979f01b4de71671d04f5cea1858 218 Gene3D G3DSA:2.40.30.10 8 37 3.2E-14 T 14-09-2016 ccrud_RS02605 a384e979f01b4de71671d04f5cea1858 218 Gene3D G3DSA:2.40.30.10 163 213 3.2E-14 T 14-09-2016 ccrud_RS02605 a384e979f01b4de71671d04f5cea1858 218 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 6 212 39.579 T 14-09-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02605 a384e979f01b4de71671d04f5cea1858 218 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 8 209 4.7E-88 T 14-09-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02605 a384e979f01b4de71671d04f5cea1858 218 ProSitePatterns PS00474 Ribosomal protein L3 signature. 106 129 - T 14-09-2016 IPR019926 Ribosomal protein L3, conserved site ccrud_RS08970 aded0826916f89737932465d71be346d 289 Pfam PF01061 ABC-2 type transporter 2 225 1.5E-13 T 14-09-2016 IPR013525 ABC-2 type transporter GO:0016020 ccrud_RS08970 aded0826916f89737932465d71be346d 289 PANTHER PTHR30294 2 233 5.2E-17 T 14-09-2016 ccrud_RS08970 aded0826916f89737932465d71be346d 289 PANTHER PTHR30294 260 281 5.2E-17 T 14-09-2016 ccrud_RS08580 80ae552f010d9fe79fc62efde59bd560 89 SMART SM01387 8 88 8.7E-49 T 14-09-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08580 80ae552f010d9fe79fc62efde59bd560 89 SUPERFAMILY SSF47060 3 89 5.0E-35 T 14-09-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 ccrud_RS08580 80ae552f010d9fe79fc62efde59bd560 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 22.084 T 14-09-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 ccrud_RS08580 80ae552f010d9fe79fc62efde59bd560 89 Pfam PF00312 Ribosomal protein S15 8 88 4.6E-36 T 14-09-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08580 80ae552f010d9fe79fc62efde59bd560 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 5 89 6.0E-39 T 14-09-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 ccrud_RS08580 80ae552f010d9fe79fc62efde59bd560 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 1.0E-25 T 14-09-2016 ccrud_RS08580 80ae552f010d9fe79fc62efde59bd560 89 Gene3D G3DSA:1.10.287.10 3 89 4.8E-38 T 14-09-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 ccrud_RS08580 80ae552f010d9fe79fc62efde59bd560 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 14-09-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08580 80ae552f010d9fe79fc62efde59bd560 89 PANTHER PTHR23321 1 89 7.5E-41 T 14-09-2016 ccrud_RS05385 73b6e80e398eefaeaed99b2c9741922f 288 Gene3D G3DSA:3.40.50.150 96 208 8.8E-14 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS05385 73b6e80e398eefaeaed99b2c9741922f 288 SUPERFAMILY SSF53335 31 223 1.29E-23 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS05385 73b6e80e398eefaeaed99b2c9741922f 288 PIRSF PIRSF018249 4 288 1.1E-61 T 14-09-2016 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 ccrud_RS05385 73b6e80e398eefaeaed99b2c9741922f 288 Pfam PF13649 Methyltransferase domain 101 185 4.4E-6 T 14-09-2016 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 293 307 1.0E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 429 441 1.0E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 359 367 1.0E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 383 394 1.0E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 PRINTS PR00131 Glycosyl hydrolase family 1 signature 404 421 1.0E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 Gene3D G3DSA:3.20.20.80 2 467 1.0E-148 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 PANTHER PTHR10353 4 469 3.7E-267 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 359 367 - T 14-09-2016 IPR018120 Glycoside hydrolase family 1, active site ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 SUPERFAMILY SSF51445 2 460 2.69E-159 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 PANTHER PTHR10353:SF35 4 469 3.7E-267 T 14-09-2016 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 Pfam PF00232 Glycosyl hydrolase family 1 2 464 8.7E-139 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12825 7c0d83d7bc8b57483600d2dc39c9f774 469 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 8 22 - T 14-09-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site ccrud_RS01315 b0fdc5b825b8ed4f9b3d40d1c3b00eeb 360 Gene3D G3DSA:3.30.420.10 21 191 9.6E-15 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS01315 b0fdc5b825b8ed4f9b3d40d1c3b00eeb 360 SUPERFAMILY SSF53098 25 129 3.79E-9 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS01315 b0fdc5b825b8ed4f9b3d40d1c3b00eeb 360 SUPERFAMILY SSF52113 269 347 2.22E-5 T 14-09-2016 IPR001357 BRCT domain ccrud_RS01315 b0fdc5b825b8ed4f9b3d40d1c3b00eeb 360 Gene3D G3DSA:3.40.50.10190 272 348 2.7E-5 T 14-09-2016 IPR001357 BRCT domain ccrud_RS07385 c3bd74268dbb8d262ff92c92ad5fa6b6 312 Gene3D G3DSA:3.20.20.100 5 310 9.1E-67 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS07385 c3bd74268dbb8d262ff92c92ad5fa6b6 312 Pfam PF00248 Aldo/keto reductase family 11 308 1.8E-48 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS07385 c3bd74268dbb8d262ff92c92ad5fa6b6 312 SUPERFAMILY SSF51430 2 310 3.01E-67 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS07385 c3bd74268dbb8d262ff92c92ad5fa6b6 312 PANTHER PTHR11732 1 310 2.2E-61 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta ccrud_RS10945 f935e8d47314d570cea6486e1d5fa2c3 233 PANTHER PTHR30353:SF0 6 232 6.3E-75 T 14-09-2016 ccrud_RS10945 f935e8d47314d570cea6486e1d5fa2c3 233 Pfam PF09335 SNARE associated Golgi protein 54 181 1.1E-24 T 14-09-2016 IPR032816 SNARE associated Golgi protein ccrud_RS10945 f935e8d47314d570cea6486e1d5fa2c3 233 PANTHER PTHR30353 6 232 6.3E-75 T 14-09-2016 IPR032818 DedA family ccrud_RS06405 6af6a96ad72a419ab675a075ddedf977 418 ProSitePatterns PS00217 Sugar transport proteins signature 2. 118 143 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS06405 6af6a96ad72a419ab675a075ddedf977 418 Pfam PF00083 Sugar (and other) transporter 13 222 6.5E-21 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS06405 6af6a96ad72a419ab675a075ddedf977 418 PANTHER PTHR23508 4 418 1.7E-95 T 14-09-2016 ccrud_RS06405 6af6a96ad72a419ab675a075ddedf977 418 Gene3D G3DSA:1.20.1250.20 13 209 1.8E-19 T 14-09-2016 ccrud_RS06405 6af6a96ad72a419ab675a075ddedf977 418 Gene3D G3DSA:1.20.1250.20 235 412 1.6E-19 T 14-09-2016 ccrud_RS06405 6af6a96ad72a419ab675a075ddedf977 418 Pfam PF07690 Major Facilitator Superfamily 238 404 2.4E-15 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS06405 6af6a96ad72a419ab675a075ddedf977 418 SUPERFAMILY SSF103473 9 407 3.4E-56 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS10890 f7abc2061c2d76beb19e05eac9ac6002 372 Gene3D G3DSA:1.20.1250.20 198 368 3.2E-10 T 14-09-2016 ccrud_RS10890 f7abc2061c2d76beb19e05eac9ac6002 372 SUPERFAMILY SSF103473 3 366 3.01E-43 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS10890 f7abc2061c2d76beb19e05eac9ac6002 372 Pfam PF07690 Major Facilitator Superfamily 10 188 8.5E-27 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS10890 f7abc2061c2d76beb19e05eac9ac6002 372 Gene3D G3DSA:1.20.1250.20 4 184 3.2E-26 T 14-09-2016 ccrud_RS10890 f7abc2061c2d76beb19e05eac9ac6002 372 PANTHER PTHR23501 4 369 6.1E-23 T 14-09-2016 ccrud_RS05515 6bb764c17cc0bf6456584bb587edb377 470 Pfam PF00743 Flavin-binding monooxygenase-like 7 234 1.4E-30 T 14-09-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 ccrud_RS05515 6bb764c17cc0bf6456584bb587edb377 470 PANTHER PTHR23023:SF124 5 387 2.6E-102 T 14-09-2016 ccrud_RS05515 6bb764c17cc0bf6456584bb587edb377 470 SUPERFAMILY SSF51905 256 421 3.75E-7 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS05515 6bb764c17cc0bf6456584bb587edb377 470 PANTHER PTHR23023 5 387 2.6E-102 T 14-09-2016 ccrud_RS05515 6bb764c17cc0bf6456584bb587edb377 470 Gene3D G3DSA:3.50.50.60 277 424 1.2E-52 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS05515 6bb764c17cc0bf6456584bb587edb377 470 Gene3D G3DSA:3.50.50.60 5 174 1.2E-52 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS05515 6bb764c17cc0bf6456584bb587edb377 470 Gene3D G3DSA:3.50.50.60 175 276 7.4E-21 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS05515 6bb764c17cc0bf6456584bb587edb377 470 SUPERFAMILY SSF51905 5 248 3.15E-48 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13125 4e0b06706f751294d28553c92d186a58 656 PANTHER PTHR22916 363 526 7.4E-54 T 14-09-2016 ccrud_RS13125 4e0b06706f751294d28553c92d186a58 656 PANTHER PTHR22916 105 326 7.4E-54 T 14-09-2016 ccrud_RS13125 4e0b06706f751294d28553c92d186a58 656 PANTHER PTHR22916:SF3 363 526 7.4E-54 T 14-09-2016 ccrud_RS13125 4e0b06706f751294d28553c92d186a58 656 PANTHER PTHR22916:SF3 105 326 7.4E-54 T 14-09-2016 ccrud_RS13125 4e0b06706f751294d28553c92d186a58 656 SUPERFAMILY SSF53448 343 451 1.69E-21 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS13125 4e0b06706f751294d28553c92d186a58 656 SUPERFAMILY SSF53448 171 313 1.69E-21 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS13125 4e0b06706f751294d28553c92d186a58 656 Pfam PF13641 Glycosyltransferase like family 2 172 446 3.3E-41 T 14-09-2016 ccrud_RS13125 4e0b06706f751294d28553c92d186a58 656 Gene3D G3DSA:3.90.550.10 370 443 2.2E-9 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS13125 4e0b06706f751294d28553c92d186a58 656 Gene3D G3DSA:3.90.550.10 172 335 2.2E-9 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 PANTHER PTHR10799 193 198 6.1E-110 T 14-09-2016 ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 PANTHER PTHR10799 428 872 6.1E-110 T 14-09-2016 ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 Gene3D G3DSA:3.40.50.300 691 834 1.4E-13 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 Gene3D G3DSA:3.40.50.300 447 609 1.4E-22 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 SUPERFAMILY SSF52540 447 643 1.15E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 SUPERFAMILY SSF52540 556 616 3.99E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 SUPERFAMILY SSF52540 685 838 3.99E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 Pfam PF00271 Helicase conserved C-terminal domain 695 805 1.3E-10 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 SMART SM00490 724 805 1.4E-8 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 SMART SM00487 444 630 5.6E-23 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 Pfam PF00176 SNF2 family N-terminal domain 466 674 3.2E-30 T 14-09-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 PANTHER PTHR10799:SF693 193 198 6.1E-110 T 14-09-2016 ccrud_RS07930 a9656faa4b94a022f0d54724df036f03 876 PANTHER PTHR10799:SF693 428 872 6.1E-110 T 14-09-2016 ccrud_RS05310 1c6b22593a0bb4f8ab5af7efab90db3c 295 PANTHER PTHR12993:SF13 10 281 1.3E-49 T 14-09-2016 ccrud_RS05310 1c6b22593a0bb4f8ab5af7efab90db3c 295 TIGRFAM TIGR03445 mycothiol_MshB: N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D-glucopyranoside deacetylase 16 235 1.9E-72 T 14-09-2016 IPR017810 Mycothiol biosynthesis protein, MshB GO:0035595 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 ccrud_RS05310 1c6b22593a0bb4f8ab5af7efab90db3c 295 SUPERFAMILY SSF102588 10 284 4.97E-60 T 14-09-2016 IPR024078 Putative deacetylase LmbE-like domain ccrud_RS05310 1c6b22593a0bb4f8ab5af7efab90db3c 295 Pfam PF02585 GlcNAc-PI de-N-acetylase 15 162 4.4E-22 T 14-09-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related ccrud_RS05310 1c6b22593a0bb4f8ab5af7efab90db3c 295 Hamap MF_01696 1D-myo-inositol 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase [mshB]. 13 293 36.232 T 14-09-2016 IPR017810 Mycothiol biosynthesis protein, MshB GO:0035595 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497 ccrud_RS05310 1c6b22593a0bb4f8ab5af7efab90db3c 295 PANTHER PTHR12993 10 281 1.3E-49 T 14-09-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related ccrud_RS05310 1c6b22593a0bb4f8ab5af7efab90db3c 295 Gene3D G3DSA:3.40.50.10320 10 284 1.4E-70 T 14-09-2016 IPR024078 Putative deacetylase LmbE-like domain ccrud_RS00825 898e6dc9c6d2fdbdc3aeaee8183ba74d 318 SUPERFAMILY SSF53613 7 313 2.49E-72 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS00825 898e6dc9c6d2fdbdc3aeaee8183ba74d 318 PANTHER PTHR10584 9 314 1.5E-123 T 14-09-2016 ccrud_RS00825 898e6dc9c6d2fdbdc3aeaee8183ba74d 318 PANTHER PTHR10584:SF194 9 314 1.5E-123 T 14-09-2016 ccrud_RS00825 898e6dc9c6d2fdbdc3aeaee8183ba74d 318 Gene3D G3DSA:3.40.1190.20 5 316 5.8E-96 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS00825 898e6dc9c6d2fdbdc3aeaee8183ba74d 318 TIGRFAM TIGR04382 myo_inos_iolC_N: 5-dehydro-2-deoxygluconokinase 9 312 3.2E-113 T 14-09-2016 IPR030830 5-dehydro-2-deoxygluconokinase KEGG: 00562+2.7.1.92|UniPathway: UPA00076 ccrud_RS00825 898e6dc9c6d2fdbdc3aeaee8183ba74d 318 Pfam PF00294 pfkB family carbohydrate kinase 8 306 2.3E-55 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 Pfam PF01966 HD domain 287 375 5.7E-13 T 14-09-2016 IPR006674 HD domain ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 Pfam PF01743 Poly A polymerase head domain 58 183 1.3E-29 T 14-09-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 Gene3D G3DSA:1.10.3090.10 182 422 8.7E-54 T 14-09-2016 ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 SUPERFAMILY SSF81301 40 181 4.17E-34 T 14-09-2016 ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 Gene3D G3DSA:3.30.460.10 39 181 5.0E-39 T 14-09-2016 ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 PANTHER PTHR13734:SF5 39 494 6.7E-96 T 14-09-2016 ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 SMART SM00471 283 449 0.0031 T 14-09-2016 IPR003607 HD/PDEase domain ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 PANTHER PTHR13734 39 494 6.7E-96 T 14-09-2016 ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 TIGRFAM TIGR02692 tRNA_CCA_actino: CCA tRNA nucleotidyltransferase 30 494 1.6E-259 T 14-09-2016 IPR014065 tRNA adenylyltransferase ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 SUPERFAMILY SSF81891 183 495 2.75E-62 T 14-09-2016 ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 TIGRFAM TIGR00277 HDIG: HDIG domain 284 364 1.0E-16 T 14-09-2016 IPR006675 HDIG domain ccrud_RS13885 768bdadeb26dcb667c9d09380db6cde8 499 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 212 272 1.5E-17 T 14-09-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 Pfam PF02779 Transketolase, pyrimidine binding domain 377 557 4.6E-46 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 SUPERFAMILY SSF52922 564 699 3.66E-40 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 SUPERFAMILY SSF52518 21 347 1.73E-97 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 Gene3D G3DSA:3.40.50.970 23 347 4.2E-106 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 PANTHER PTHR11624:SF1 22 335 0.0 T 14-09-2016 ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 TIGRFAM TIGR00232 tktlase_bact: transketolase 28 698 7.1E-241 T 14-09-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 PANTHER PTHR11624:SF1 364 699 0.0 T 14-09-2016 ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 SMART SM00861 378 558 8.8E-68 T 14-09-2016 IPR005475 Transketolase-like, pyrimidine-binding domain ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 Gene3D G3DSA:3.40.50.970 358 569 1.7E-75 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 PANTHER PTHR11624 364 699 0.0 T 14-09-2016 IPR033247 Transketolase family ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 PANTHER PTHR11624 22 335 0.0 T 14-09-2016 IPR033247 Transketolase family ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 ProSitePatterns PS00801 Transketolase signature 1. 34 54 - T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 ProSitePatterns PS00802 Transketolase signature 2. 500 516 - T 14-09-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 SUPERFAMILY SSF52518 374 560 3.73E-66 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 Pfam PF02780 Transketolase, C-terminal domain 582 690 8.9E-13 T 14-09-2016 IPR033248 Transketolase, C-terminal domain ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 26 361 4.8E-136 T 14-09-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 ccrud_RS07615 67189c2b04fa53cb84468534300d0854 700 Gene3D G3DSA:3.40.50.920 572 698 6.3E-46 T 14-09-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 ccrud_RS07340 e96605fdd229b104e8ee26511d0f1cb4 140 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 7 132 3.1E-14 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS07340 e96605fdd229b104e8ee26511d0f1cb4 140 SMART SM00226 5 135 7.1E-12 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS07340 e96605fdd229b104e8ee26511d0f1cb4 140 SUPERFAMILY SSF52788 1 133 5.89E-25 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS07340 e96605fdd229b104e8ee26511d0f1cb4 140 PANTHER PTHR11717 1 138 1.1E-15 T 14-09-2016 ccrud_RS07340 e96605fdd229b104e8ee26511d0f1cb4 140 Gene3D G3DSA:3.40.50.270 4 133 1.7E-24 T 14-09-2016 ccrud_RS07340 e96605fdd229b104e8ee26511d0f1cb4 140 PANTHER PTHR11717:SF18 1 138 1.1E-15 T 14-09-2016 ccrud_RS11700 2ed5e9cffe934acbbbc8fd99e100df6b 229 Gene3D G3DSA:3.20.20.370 56 147 1.4E-4 T 14-09-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 ccrud_RS11700 2ed5e9cffe934acbbbc8fd99e100df6b 229 SUPERFAMILY SSF88713 20 140 1.91E-6 T 14-09-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 ccrud_RS11700 2ed5e9cffe934acbbbc8fd99e100df6b 229 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 22 137 4.7E-14 T 14-09-2016 IPR018763 Protein of unknown function DUF2334 ccrud_RS09360 241d247e583b1490a8ff900999237088 309 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 14 307 1.1E-84 T 14-09-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS09360 241d247e583b1490a8ff900999237088 309 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 137 151 - T 14-09-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS09360 241d247e583b1490a8ff900999237088 309 PANTHER PTHR11079 10 309 6.7E-101 T 14-09-2016 ccrud_RS09360 241d247e583b1490a8ff900999237088 309 SUPERFAMILY SSF55120 79 307 1.6E-70 T 14-09-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS09360 241d247e583b1490a8ff900999237088 309 PANTHER PTHR11079:SF73 10 309 6.7E-101 T 14-09-2016 ccrud_RS09360 241d247e583b1490a8ff900999237088 309 SUPERFAMILY SSF55174 13 105 1.62E-7 T 14-09-2016 ccrud_RS09360 241d247e583b1490a8ff900999237088 309 Pfam PF00849 RNA pseudouridylate synthase 91 245 9.5E-30 T 14-09-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 ccrud_RS09360 241d247e583b1490a8ff900999237088 309 Gene3D G3DSA:3.10.290.10 16 55 1.1E-7 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS01110 14ecd7360dd7e0db780fbae24c3a3bf0 356 SUPERFAMILY SSF52821 257 353 1.01E-23 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS01110 14ecd7360dd7e0db780fbae24c3a3bf0 356 Gene3D G3DSA:3.40.250.10 252 353 3.7E-23 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS01110 14ecd7360dd7e0db780fbae24c3a3bf0 356 Pfam PF00581 Rhodanese-like domain 274 352 2.5E-13 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS01110 14ecd7360dd7e0db780fbae24c3a3bf0 356 Gene3D G3DSA:3.40.50.720 5 236 9.8E-64 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01110 14ecd7360dd7e0db780fbae24c3a3bf0 356 PANTHER PTHR10953:SF153 4 351 8.6E-99 T 14-09-2016 ccrud_RS01110 14ecd7360dd7e0db780fbae24c3a3bf0 356 SUPERFAMILY SSF69572 3 240 2.35E-82 T 14-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 ccrud_RS01110 14ecd7360dd7e0db780fbae24c3a3bf0 356 Pfam PF00899 ThiF family 9 236 2.2E-55 T 14-09-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 ccrud_RS01110 14ecd7360dd7e0db780fbae24c3a3bf0 356 PANTHER PTHR10953 4 351 8.6E-99 T 14-09-2016 ccrud_RS01110 14ecd7360dd7e0db780fbae24c3a3bf0 356 SMART SM00450 257 356 1.3E-16 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 Gene3D G3DSA:3.40.50.300 212 374 1.9E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 PANTHER PTHR24031:SF334 1 450 4.1E-157 T 14-09-2016 ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 SMART SM00490 257 338 3.6E-26 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 SUPERFAMILY SSF52540 74 356 1.78E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 Pfam PF00270 DEAD/DEAH box helicase 26 196 1.4E-42 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 SUPERFAMILY SSF52540 29 96 7.97E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 PANTHER PTHR24031 1 450 4.1E-157 T 14-09-2016 ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 SMART SM00487 21 222 3.1E-52 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 Gene3D G3DSA:3.40.50.300 1 211 7.8E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07020 db6091e67721df425de7d71992d96b02 450 Pfam PF00271 Helicase conserved C-terminal domain 240 338 2.9E-23 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 SUPERFAMILY SSF81653 253 347 4.97E-25 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00943 Copper-transporting ATPase signature 613 630 1.6E-12 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00943 Copper-transporting ATPase signature 670 684 1.6E-12 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00943 Copper-transporting ATPase signature 217 236 1.6E-12 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00943 Copper-transporting ATPase signature 237 255 1.6E-12 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00943 Copper-transporting ATPase signature 370 384 1.6E-12 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00943 Copper-transporting ATPase signature 431 446 1.6E-12 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00943 Copper-transporting ATPase signature 57 77 1.6E-12 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 Pfam PF00122 E1-E2 ATPase 218 439 3.0E-63 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 167 738 1.5E-177 T 14-09-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 SUPERFAMILY SSF81665 348 442 3.01E-15 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 SUPERFAMILY SSF81665 203 248 3.01E-15 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 SUPERFAMILY SSF81665 685 715 3.01E-15 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 SUPERFAMILY SSF56784 499 736 3.3E-54 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 SUPERFAMILY SSF56784 446 466 3.3E-54 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 SUPERFAMILY SSF55008 15 79 2.62E-19 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 212 738 2.3E-121 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 211 739 6.4E-159 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 450 456 - T 14-09-2016 IPR018303 P-type ATPase, phosphorylation site ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PANTHER PTHR24093 15 739 5.5E-239 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 ProSitePatterns PS01229 Hypothetical cof family signature 2. 636 658 - T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 Gene3D G3DSA:3.40.50.1000 564 704 6.7E-52 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 Gene3D G3DSA:3.40.50.1000 420 463 6.7E-52 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 ProSitePatterns PS01047 Heavy-metal-associated domain. 19 47 - T 14-09-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 Gene3D G3DSA:3.40.1110.10 464 563 1.7E-14 T 14-09-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 Pfam PF00702 haloacid dehalogenase-like hydrolase 444 650 1.1E-40 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 Gene3D G3DSA:3.30.70.100 14 77 1.8E-24 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 Gene3D G3DSA:2.70.150.10 167 347 3.2E-30 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 Pfam PF00403 Heavy-metal-associated domain 19 75 5.6E-15 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 220 719 8.5E-86 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 659 671 3.2E-24 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 636 655 3.2E-24 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 297 311 3.2E-24 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 583 593 3.2E-24 T 14-09-2016 ccrud_RS02075 c9e0b824bf30bc188fd86183a361072f 746 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 448 462 3.2E-24 T 14-09-2016 ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 Gene3D G3DSA:1.10.10.250 76 144 2.1E-32 T 14-09-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 Pfam PF03946 Ribosomal protein L11, N-terminal domain 13 70 2.2E-28 T 14-09-2016 IPR020784 Ribosomal protein L11, N-terminal ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 PANTHER PTHR11661 1 145 6.3E-70 T 14-09-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 SUPERFAMILY SSF46906 71 144 1.19E-26 T 14-09-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 40 72 1.0E-13 T 14-09-2016 ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 7 144 1.9E-63 T 14-09-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 Gene3D G3DSA:3.30.1550.10 6 75 2.3E-37 T 14-09-2016 IPR020784 Ribosomal protein L11, N-terminal ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 ProSitePatterns PS00359 Ribosomal protein L11 signature. 130 145 - T 14-09-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 Pfam PF00298 Ribosomal protein L11, RNA binding domain 75 143 8.3E-27 T 14-09-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 SUPERFAMILY SSF54747 1 88 2.49E-29 T 14-09-2016 IPR020784 Ribosomal protein L11, N-terminal ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 9 145 31.711 T 14-09-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02500 d50147a936d2be81bed5020a8cda929b 145 SMART SM00649 13 144 5.8E-84 T 14-09-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 PANTHER PTHR26402 2 210 8.7E-64 T 14-09-2016 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 SMART SM00421 147 204 1.0E-22 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 PANTHER PTHR26402:SF151 2 210 8.7E-64 T 14-09-2016 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 202 2.8E-19 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 SUPERFAMILY SSF52172 2 139 2.56E-26 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 SMART SM00448 2 121 7.7E-23 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 164 191 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 164 180 4.4E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 150 164 4.4E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 180 192 4.4E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 SUPERFAMILY SSF46894 141 210 1.9E-19 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 Gene3D G3DSA:3.40.50.2300 2 126 1.1E-30 T 14-09-2016 ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 Gene3D G3DSA:1.10.10.10 127 210 2.3E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08745 3146fcf9d30a4e8dd18076b9e72ae1c7 210 Pfam PF00072 Response regulator receiver domain 4 120 6.1E-20 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS10200 2353fdf15042ec59526522a409d564df 368 PANTHER PTHR11751:SF21 5 368 8.0E-97 T 14-09-2016 ccrud_RS10200 2353fdf15042ec59526522a409d564df 368 Gene3D G3DSA:3.90.1150.10 239 367 5.3E-33 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS10200 2353fdf15042ec59526522a409d564df 368 SUPERFAMILY SSF53383 4 368 1.06E-82 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS10200 2353fdf15042ec59526522a409d564df 368 Pfam PF00155 Aminotransferase class I and II 27 364 7.9E-40 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ccrud_RS10200 2353fdf15042ec59526522a409d564df 368 Gene3D G3DSA:3.40.640.10 38 238 1.7E-44 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS10200 2353fdf15042ec59526522a409d564df 368 PANTHER PTHR11751 5 368 8.0E-97 T 14-09-2016 ccrud_RS02265 8a4c0c5a60b2e8a69e292761d7aaa491 358 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 15 358 44.354 T 14-09-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 ccrud_RS02265 8a4c0c5a60b2e8a69e292761d7aaa491 358 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 31 40 - T 14-09-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 ccrud_RS02265 8a4c0c5a60b2e8a69e292761d7aaa491 358 SUPERFAMILY SSF51726 17 357 7.67E-94 T 14-09-2016 ccrud_RS02265 8a4c0c5a60b2e8a69e292761d7aaa491 358 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 18 358 3.7E-113 T 14-09-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 ccrud_RS02265 8a4c0c5a60b2e8a69e292761d7aaa491 358 Gene3D G3DSA:3.20.20.210 15 357 5.1E-138 T 14-09-2016 ccrud_RS02265 8a4c0c5a60b2e8a69e292761d7aaa491 358 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 17 357 1.1E-118 T 14-09-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 ccrud_RS02265 8a4c0c5a60b2e8a69e292761d7aaa491 358 PANTHER PTHR21091:SF2 19 358 2.7E-108 T 14-09-2016 ccrud_RS02265 8a4c0c5a60b2e8a69e292761d7aaa491 358 PANTHER PTHR21091 19 358 2.7E-108 T 14-09-2016 ccrud_RS02265 8a4c0c5a60b2e8a69e292761d7aaa491 358 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 148 164 - T 14-09-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 SUPERFAMILY SSF53850 96 308 1.81E-36 T 14-09-2016 ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 Gene3D G3DSA:3.40.190.10 183 273 3.6E-24 T 14-09-2016 ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 Pfam PF03466 LysR substrate binding domain 94 305 9.0E-44 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 4.2E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 4.2E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 4.2E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 SUPERFAMILY SSF46785 4 117 4.42E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 Gene3D G3DSA:3.40.190.10 97 182 8.2E-19 T 14-09-2016 ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 8.4E-19 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 PANTHER PTHR30419:SF4 3 322 8.5E-75 T 14-09-2016 ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 Gene3D G3DSA:1.10.10.10 8 86 2.3E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08305 e7a84686c2154d6afa9fd96e71f55b3d 326 PANTHER PTHR30419 3 322 8.5E-75 T 14-09-2016 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 297 312 2.1E-7 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 312 328 2.1E-7 T 14-09-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 SMART SM00342 243 328 1.9E-24 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 Gene3D G3DSA:1.10.10.60 224 278 4.0E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 Pfam PF12833 Helix-turn-helix domain 250 329 3.5E-19 T 14-09-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 Gene3D G3DSA:1.10.10.60 279 332 5.8E-16 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 PANTHER PTHR11019 90 336 1.1E-28 T 14-09-2016 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 Pfam PF14525 AraC-binding-like domain 30 186 1.5E-13 T 14-09-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 PANTHER PTHR11019:SF50 90 336 1.1E-28 T 14-09-2016 ccrud_RS12070 1f9bd1a655f9e2e156e8719b8d21d5e7 338 SUPERFAMILY SSF46689 279 331 2.42E-11 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS06540 13490c964020f5b95d61ca6a6499786a 276 SUPERFAMILY SSF53335 32 273 1.99E-37 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06540 13490c964020f5b95d61ca6a6499786a 276 Gene3D G3DSA:3.40.50.150 56 256 1.5E-33 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06540 13490c964020f5b95d61ca6a6499786a 276 PANTHER PTHR10108 66 256 6.5E-26 T 14-09-2016 ccrud_RS06540 13490c964020f5b95d61ca6a6499786a 276 Pfam PF08241 Methyltransferase domain 80 173 5.5E-22 T 14-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 ProSitePatterns PS00211 ABC transporters family signature. 430 444 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 PANTHER PTHR24220 7 417 1.2E-135 T 14-09-2016 ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 PANTHER PTHR24220:SF132 7 417 1.2E-135 T 14-09-2016 ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 Gene3D G3DSA:3.40.50.300 2 257 1.4E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 SUPERFAMILY SSF52540 5 254 4.65E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 SMART SM00382 315 507 8.1E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 SMART SM00382 34 233 1.8E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 Pfam PF00005 ABC transporter 307 457 8.3E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 Pfam PF00005 ABC transporter 25 184 1.7E-27 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 Gene3D G3DSA:3.40.50.300 284 531 7.6E-76 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10900 38ef9be592692d8256a8c037e796e59b 547 SUPERFAMILY SSF52540 285 528 3.41E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10095 e009948bb79bff625967dc8e0c7cca84 192 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 156 20.433 T 14-09-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 ccrud_RS10095 e009948bb79bff625967dc8e0c7cca84 192 SUPERFAMILY SSF55486 5 149 9.52E-39 T 14-09-2016 ccrud_RS10095 e009948bb79bff625967dc8e0c7cca84 192 Pfam PF02130 Uncharacterized protein family UPF0054 18 148 1.0E-34 T 14-09-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 ccrud_RS10095 e009948bb79bff625967dc8e0c7cca84 192 PANTHER PTHR22881 25 150 4.8E-41 T 14-09-2016 ccrud_RS10095 e009948bb79bff625967dc8e0c7cca84 192 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 37 150 7.5E-34 T 14-09-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 ccrud_RS10095 e009948bb79bff625967dc8e0c7cca84 192 Gene3D G3DSA:3.40.390.30 1 150 6.2E-41 T 14-09-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 ccrud_RS10095 e009948bb79bff625967dc8e0c7cca84 192 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 120 130 - T 14-09-2016 IPR020549 Endoribonuclease YbeY, conserved site ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 Pfam PF03466 LysR substrate binding domain 88 290 4.9E-21 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 Gene3D G3DSA:1.10.10.10 2 85 2.6E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 PANTHER PTHR30126:SF11 1 304 5.4E-50 T 14-09-2016 ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 Gene3D G3DSA:3.40.190.10 88 194 4.3E-14 T 14-09-2016 ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 Gene3D G3DSA:3.40.190.10 195 261 6.4E-6 T 14-09-2016 ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-10 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.7E-22 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 PANTHER PTHR30126 1 304 5.4E-50 T 14-09-2016 ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 SUPERFAMILY SSF53850 90 291 8.84E-22 T 14-09-2016 ccrud_RS08145 36a5a8b2582f9a4ead0e69f84ddce607 304 SUPERFAMILY SSF46785 2 85 3.76E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06415 10fdcd175d13d2810099ead635fa5e83 235 PANTHER PTHR30136:SF18 12 231 6.5E-62 T 14-09-2016 ccrud_RS06415 10fdcd175d13d2810099ead635fa5e83 235 PANTHER PTHR30136 12 231 6.5E-62 T 14-09-2016 ccrud_RS06415 10fdcd175d13d2810099ead635fa5e83 235 Gene3D G3DSA:1.10.10.10 5 73 5.2E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06415 10fdcd175d13d2810099ead635fa5e83 235 SMART SM00346 15 100 1.0E-17 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS06415 10fdcd175d13d2810099ead635fa5e83 235 SUPERFAMILY SSF55781 72 235 7.19E-34 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS06415 10fdcd175d13d2810099ead635fa5e83 235 Pfam PF01614 Bacterial transcriptional regulator 163 230 4.9E-13 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal ccrud_RS06415 10fdcd175d13d2810099ead635fa5e83 235 Pfam PF09339 IclR helix-turn-helix domain 18 64 4.6E-13 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS06415 10fdcd175d13d2810099ead635fa5e83 235 SUPERFAMILY SSF46785 15 82 8.99E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06415 10fdcd175d13d2810099ead635fa5e83 235 Gene3D G3DSA:3.30.450.40 81 235 7.2E-38 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS02725 ba46b277e36dd684cb94b3af359c5c6e 268 Pfam PF12822 Protein of unknown function (DUF3816) 71 186 3.2E-13 T 14-09-2016 IPR024529 ECF transporter, substrate-specific component GO:0005215 ccrud_RS02725 ba46b277e36dd684cb94b3af359c5c6e 268 PIRSF PIRSF037395 1 261 9.8E-112 T 14-09-2016 IPR017196 ECF transporter, predicted substrate-specific component UCP037395 ccrud_RS07030 f0de2aed01cb2d1296981fe24075e56c 357 PANTHER PTHR22893:SF14 2 354 4.0E-143 T 14-09-2016 ccrud_RS07030 f0de2aed01cb2d1296981fe24075e56c 357 PANTHER PTHR22893 2 354 4.0E-143 T 14-09-2016 ccrud_RS07030 f0de2aed01cb2d1296981fe24075e56c 357 SUPERFAMILY SSF51395 3 355 4.51E-109 T 14-09-2016 ccrud_RS07030 f0de2aed01cb2d1296981fe24075e56c 357 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 5 333 2.5E-77 T 14-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 ccrud_RS07030 f0de2aed01cb2d1296981fe24075e56c 357 Gene3D G3DSA:3.20.20.70 2 354 5.5E-117 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS05120 685c0f18224d4f10b67c9e9a0b5f1ffc 132 Gene3D G3DSA:3.30.300.20 12 130 1.3E-11 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta ccrud_RS05120 685c0f18224d4f10b67c9e9a0b5f1ffc 132 SUPERFAMILY SSF82784 3 129 1.27E-15 T 14-09-2016 IPR003718 OsmC/Ohr family ccrud_RS05120 685c0f18224d4f10b67c9e9a0b5f1ffc 132 Pfam PF02566 OsmC-like protein 33 128 4.1E-11 T 14-09-2016 IPR003718 OsmC/Ohr family ccrud_RS09835 acbce520f53b27bb9fb0b96d8192a5eb 431 PRINTS PR00473 Galactokinase signature 155 173 1.5E-5 T 14-09-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 ccrud_RS09835 acbce520f53b27bb9fb0b96d8192a5eb 431 PRINTS PR00473 Galactokinase signature 47 65 1.5E-5 T 14-09-2016 IPR000705 Galactokinase GO:0004335|GO:0005524|GO:0006012|GO:0046835 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 ccrud_RS09835 acbce520f53b27bb9fb0b96d8192a5eb 431 Pfam PF00288 GHMP kinases N terminal domain 157 188 2.1E-4 T 14-09-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 ccrud_RS09835 acbce520f53b27bb9fb0b96d8192a5eb 431 Pfam PF10509 Galactokinase galactose-binding signature 31 77 2.1E-9 T 14-09-2016 IPR019539 Galactokinase galactose-binding domain KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 ccrud_RS09835 acbce520f53b27bb9fb0b96d8192a5eb 431 Gene3D G3DSA:3.30.230.10 25 252 6.2E-21 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS09835 acbce520f53b27bb9fb0b96d8192a5eb 431 SUPERFAMILY SSF54211 21 247 1.06E-27 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS09835 acbce520f53b27bb9fb0b96d8192a5eb 431 PRINTS PR00959 Mevalonate kinase family signature 45 69 1.5E-10 T 14-09-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 ccrud_RS09835 acbce520f53b27bb9fb0b96d8192a5eb 431 PRINTS PR00959 Mevalonate kinase family signature 162 184 1.5E-10 T 14-09-2016 IPR006206 Mevalonate/galactokinase GO:0005524|GO:0005737|GO:0008152|GO:0016301|GO:0016773 KEGG: 00052+2.7.1.6|KEGG: 00520+2.7.1.6|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6527|UniPathway: UPA00214 ccrud_RS09835 acbce520f53b27bb9fb0b96d8192a5eb 431 Gene3D G3DSA:3.30.70.890 331 413 3.5E-7 T 14-09-2016 IPR013750 GHMP kinase, C-terminal domain ccrud_RS10575 168fbda42414ac2dfcad5b748f1bf0aa 525 Gene3D G3DSA:3.90.76.10 46 193 1.8E-34 T 14-09-2016 ccrud_RS10575 168fbda42414ac2dfcad5b748f1bf0aa 525 PANTHER PTHR30290:SF10 5 523 2.1E-94 T 14-09-2016 ccrud_RS10575 168fbda42414ac2dfcad5b748f1bf0aa 525 Gene3D G3DSA:3.10.105.10 310 496 6.2E-43 T 14-09-2016 ccrud_RS10575 168fbda42414ac2dfcad5b748f1bf0aa 525 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 78 445 2.0E-55 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain ccrud_RS10575 168fbda42414ac2dfcad5b748f1bf0aa 525 PIRSF PIRSF002741 4 517 1.2E-65 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ccrud_RS10575 168fbda42414ac2dfcad5b748f1bf0aa 525 SUPERFAMILY SSF53850 41 524 1.21E-93 T 14-09-2016 ccrud_RS10575 168fbda42414ac2dfcad5b748f1bf0aa 525 Gene3D G3DSA:3.40.190.10 194 309 1.9E-25 T 14-09-2016 ccrud_RS10575 168fbda42414ac2dfcad5b748f1bf0aa 525 PANTHER PTHR30290 5 523 2.1E-94 T 14-09-2016 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 PANTHER PTHR22939:SF79 34 436 8.1E-111 T 14-09-2016 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 SUPERFAMILY SSF50156 333 430 1.04E-17 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 PRINTS PR00834 HtrA/DegQ protease family signature 300 317 4.5E-45 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 PRINTS PR00834 HtrA/DegQ protease family signature 238 262 4.5E-45 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 PRINTS PR00834 HtrA/DegQ protease family signature 173 185 4.5E-45 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 PRINTS PR00834 HtrA/DegQ protease family signature 197 217 4.5E-45 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 PRINTS PR00834 HtrA/DegQ protease family signature 381 393 4.5E-45 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 PRINTS PR00834 HtrA/DegQ protease family signature 278 295 4.5E-45 T 14-09-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 Gene3D G3DSA:2.40.10.10 131 232 4.7E-27 T 14-09-2016 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 Pfam PF13365 Trypsin-like peptidase domain 164 307 1.9E-31 T 14-09-2016 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 PANTHER PTHR22939 34 436 8.1E-111 T 14-09-2016 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 SUPERFAMILY SSF50494 140 348 4.12E-56 T 14-09-2016 IPR009003 Peptidase S1, PA clan ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 Gene3D G3DSA:2.40.10.10 233 354 4.5E-43 T 14-09-2016 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 Pfam PF13180 PDZ domain 351 432 7.2E-17 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 Gene3D G3DSA:2.30.42.10 355 435 1.5E-15 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS04325 ae341ed8de682929a8b59880017307ce 437 SMART SM00228 351 423 2.5E-8 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS06660 1e48cf3cb5d00d8d88846afa33aec861 345 PANTHER PTHR11538 89 343 3.1E-96 T 14-09-2016 ccrud_RS06660 1e48cf3cb5d00d8d88846afa33aec861 345 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 26 93 2.6E-13 T 14-09-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 ccrud_RS06660 1e48cf3cb5d00d8d88846afa33aec861 345 Pfam PF01409 tRNA synthetases class II core domain (F) 99 338 1.3E-97 T 14-09-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 ccrud_RS06660 1e48cf3cb5d00d8d88846afa33aec861 345 Gene3D G3DSA:3.30.930.10 18 342 9.5E-113 T 14-09-2016 ccrud_RS06660 1e48cf3cb5d00d8d88846afa33aec861 345 SUPERFAMILY SSF55681 99 338 2.32E-73 T 14-09-2016 ccrud_RS06660 1e48cf3cb5d00d8d88846afa33aec861 345 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 51 337 1.1E-86 T 14-09-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 ccrud_RS06660 1e48cf3cb5d00d8d88846afa33aec861 345 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 15 341 42.556 T 14-09-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 ccrud_RS06660 1e48cf3cb5d00d8d88846afa33aec861 345 SUPERFAMILY SSF46589 20 105 1.2E-13 T 14-09-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 ccrud_RS00605 29716e3070865c180abd07adf2e45476 170 SUPERFAMILY SSF53254 5 152 8.14E-17 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS00605 29716e3070865c180abd07adf2e45476 170 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 70 7.7E-5 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS00605 29716e3070865c180abd07adf2e45476 170 Gene3D G3DSA:3.40.50.1240 3 169 5.5E-46 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS09665 94631a06f5f49a00d65504e9df26717a 280 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 280 34.808 T 14-09-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 ccrud_RS09665 94631a06f5f49a00d65504e9df26717a 280 Pfam PF02654 Cobalamin-5-phosphate synthase 27 270 4.2E-41 T 14-09-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 ccrud_RS09665 94631a06f5f49a00d65504e9df26717a 280 PANTHER PTHR34148:SF1 14 277 1.5E-31 T 14-09-2016 ccrud_RS09665 94631a06f5f49a00d65504e9df26717a 280 PANTHER PTHR34148 14 277 1.5E-31 T 14-09-2016 ccrud_RS10780 7f3d703ff23cbee1e1577a7d4ed27a37 203 Pfam PF01323 DSBA-like thioredoxin domain 4 161 2.4E-9 T 14-09-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 ccrud_RS10780 7f3d703ff23cbee1e1577a7d4ed27a37 203 Gene3D G3DSA:3.40.30.10 2 161 2.1E-13 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS10780 7f3d703ff23cbee1e1577a7d4ed27a37 203 SUPERFAMILY SSF52833 3 163 1.12E-22 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 8 187 1.6E-64 T 14-09-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 Pfam PF00625 Guanylate kinase 9 187 1.4E-37 T 14-09-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 SMART SM00072 7 190 5.3E-53 T 14-09-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 Hamap MF_00328 Guanylate kinase [gmk]. 6 190 32.819 T 14-09-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 PANTHER PTHR23117 8 188 3.9E-76 T 14-09-2016 ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 Gene3D G3DSA:3.30.63.10 46 90 1.6E-22 T 14-09-2016 ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 Gene3D G3DSA:3.40.50.300 20 45 1.2E-4 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 Gene3D G3DSA:3.40.50.300 91 187 1.7E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 Gene3D G3DSA:3.40.50.300 7 19 1.7E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 ProSitePatterns PS00856 Guanylate kinase-like signature. 42 59 - T 14-09-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 ccrud_RS07765 d2020d14d1d69e4ec422529bd031d750 190 SUPERFAMILY SSF52540 8 188 2.56E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03245 67a774f893fb4a7b358bf4352fd56f37 258 PANTHER PTHR11085 2 256 1.8E-78 T 14-09-2016 IPR003000 Sirtuin family GO:0070403 ccrud_RS03245 67a774f893fb4a7b358bf4352fd56f37 258 Gene3D G3DSA:3.30.1600.10 38 77 6.7E-27 T 14-09-2016 IPR026591 Sirtuin family, catalytic core small domain ccrud_RS03245 67a774f893fb4a7b358bf4352fd56f37 258 Gene3D G3DSA:3.30.1600.10 129 178 6.7E-27 T 14-09-2016 IPR026591 Sirtuin family, catalytic core small domain ccrud_RS03245 67a774f893fb4a7b358bf4352fd56f37 258 SUPERFAMILY SSF52467 6 256 1.6E-80 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS03245 67a774f893fb4a7b358bf4352fd56f37 258 Pfam PF02146 Sir2 family 28 208 1.9E-49 T 14-09-2016 IPR003000 Sirtuin family GO:0070403 ccrud_RS03245 67a774f893fb4a7b358bf4352fd56f37 258 Hamap MF_01121 NAD-dependent protein deacylase [cobB]. 21 258 60.295 T 14-09-2016 IPR027546 Sirtuin, class III GO:0036054|GO:0036055|GO:0070403 ccrud_RS03245 67a774f893fb4a7b358bf4352fd56f37 258 Gene3D G3DSA:3.40.50.1220 187 253 2.0E-41 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS03245 67a774f893fb4a7b358bf4352fd56f37 258 Gene3D G3DSA:3.40.50.1220 85 128 2.0E-41 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS03245 67a774f893fb4a7b358bf4352fd56f37 258 Gene3D G3DSA:3.40.50.1220 5 36 2.0E-41 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS01390 4976cd652cf9fc5c0818cf1f85d54315 510 PANTHER PTHR22773:SF49 1 496 1.0E-106 T 14-09-2016 ccrud_RS01390 4976cd652cf9fc5c0818cf1f85d54315 510 PANTHER PTHR22773 1 496 1.0E-106 T 14-09-2016 ccrud_RS01390 4976cd652cf9fc5c0818cf1f85d54315 510 Pfam PF00361 Proton-conducting membrane transporter 127 413 7.2E-45 T 14-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 ccrud_RS05620 f595e1f293f22efde76c306e55b65d37 301 Gene3D G3DSA:3.40.50.1820 14 297 5.0E-80 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05620 f595e1f293f22efde76c306e55b65d37 301 Pfam PF07859 alpha/beta hydrolase fold 74 274 4.2E-66 T 14-09-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 ccrud_RS05620 f595e1f293f22efde76c306e55b65d37 301 SUPERFAMILY SSF53474 43 297 6.54E-58 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05620 f595e1f293f22efde76c306e55b65d37 301 PANTHER PTHR23024 53 283 1.3E-72 T 14-09-2016 ccrud_RS05620 f595e1f293f22efde76c306e55b65d37 301 PANTHER PTHR23024:SF24 53 283 1.3E-72 T 14-09-2016 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 PANTHER PTHR32294 3 1187 0.0 T 14-09-2016 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 SMART SM00481 8 75 2.0E-26 T 14-09-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 Pfam PF14579 Helix-hairpin-helix motif 836 923 1.8E-21 T 14-09-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 Gene3D G3DSA:3.20.20.140 7 272 6.8E-37 T 14-09-2016 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 SUPERFAMILY SSF89550 7 93 2.35E-26 T 14-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 SUPERFAMILY SSF89550 121 249 2.35E-26 T 14-09-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 Pfam PF02811 PHP domain 9 195 9.6E-43 T 14-09-2016 IPR004013 PHP domain GO:0003824 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 319 763 1.5E-153 T 14-09-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 PANTHER PTHR32294:SF0 3 1187 0.0 T 14-09-2016 ccrud_RS09320 2477cacb591fc37ded2ccec82acfe00d 1188 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 7 1065 0.0 T 14-09-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS06000 591820eda8b5b07a9cde48d305d44538 497 Gene3D G3DSA:3.90.1300.10 11 494 3.9E-165 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06000 591820eda8b5b07a9cde48d305d44538 497 SUPERFAMILY SSF75304 8 494 5.1E-153 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06000 591820eda8b5b07a9cde48d305d44538 497 Pfam PF01425 Amidase 35 485 6.3E-153 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06000 591820eda8b5b07a9cde48d305d44538 497 PANTHER PTHR11895:SF75 26 493 9.7E-203 T 14-09-2016 ccrud_RS06000 591820eda8b5b07a9cde48d305d44538 497 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 25 493 2.9E-182 T 14-09-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06000 591820eda8b5b07a9cde48d305d44538 497 PANTHER PTHR11895 26 493 9.7E-203 T 14-09-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06000 591820eda8b5b07a9cde48d305d44538 497 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 22 497 92.003 T 14-09-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06000 591820eda8b5b07a9cde48d305d44538 497 ProSitePatterns PS00571 Amidases signature. 164 195 - T 14-09-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS04090 8b4303ab7611c64ca1c63612a2624b71 118 SUPERFAMILY SSF54534 13 117 7.66E-32 T 14-09-2016 ccrud_RS04090 8b4303ab7611c64ca1c63612a2624b71 118 PANTHER PTHR10516 17 117 7.9E-27 T 14-09-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type ccrud_RS04090 8b4303ab7611c64ca1c63612a2624b71 118 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 29 116 1.8E-21 T 14-09-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 ccrud_RS04090 8b4303ab7611c64ca1c63612a2624b71 118 Gene3D G3DSA:3.10.50.40 4 117 6.6E-32 T 14-09-2016 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 413 735 2.3E-142 T 14-09-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 SUPERFAMILY SSF51726 394 738 1.83E-108 T 14-09-2016 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 PANTHER PTHR30519:SF0 3 745 0.0 T 14-09-2016 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 Hamap MF_00172 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [metE]. 5 740 32.329 T 14-09-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 Gene3D G3DSA:3.20.20.210 7 380 9.6E-107 T 14-09-2016 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 Gene3D G3DSA:3.20.20.210 394 742 6.4E-118 T 14-09-2016 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 PANTHER PTHR30519 3 745 0.0 T 14-09-2016 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 7 308 1.7E-94 T 14-09-2016 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 SUPERFAMILY SSF51726 7 382 5.76E-72 T 14-09-2016 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 PIRSF PIRSF000382 4 745 5.5E-279 T 14-09-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 ccrud_RS05505 2395a9708da3c7f07c8470467b57efec 745 TIGRFAM TIGR01371 met_syn_B12ind: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase 11 739 0.0 T 14-09-2016 IPR006276 Cobalamin-independent methionine synthase GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 45 199 4.5E-69 T 14-09-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 SUPERFAMILY SSF54768 44 112 8.79E-23 T 14-09-2016 ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 25 199 34.97 T 14-09-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 Gene3D G3DSA:3.30.230.10 112 195 2.7E-31 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 Pfam PF00333 Ribosomal protein S5, N-terminal domain 49 111 7.7E-28 T 14-09-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 SUPERFAMILY SSF54211 115 195 3.54E-24 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 PANTHER PTHR13718 47 200 5.6E-71 T 14-09-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 Gene3D G3DSA:3.30.160.20 45 108 1.1E-29 T 14-09-2016 IPR014720 Double-stranded RNA-binding domain ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 Pfam PF03719 Ribosomal protein S5, C-terminal domain 123 193 9.2E-28 T 14-09-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 ccrud_RS02770 e8481b6188be0ba0545d66ff2f98fcc6 214 ProSitePatterns PS00585 Ribosomal protein S5 signature. 64 96 - T 14-09-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site ccrud_RS08805 c6c128af06515d47cbfa85cc7cf2ff02 297 PANTHER PTHR13773:SF0 6 288 3.8E-62 T 14-09-2016 ccrud_RS08805 c6c128af06515d47cbfa85cc7cf2ff02 297 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 249 275 - T 14-09-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 ccrud_RS08805 c6c128af06515d47cbfa85cc7cf2ff02 297 PANTHER PTHR13773 6 288 3.8E-62 T 14-09-2016 ccrud_RS08805 c6c128af06515d47cbfa85cc7cf2ff02 297 Pfam PF01148 Cytidylyltransferase family 28 290 3.9E-55 T 14-09-2016 ccrud_RS03900 204de91bb6f5b0696299ad1efb396dfb 164 TIGRFAM TIGR00086 smpB: SsrA-binding protein 15 155 2.3E-56 T 14-09-2016 IPR000037 SsrA-binding protein GO:0003723 ccrud_RS03900 204de91bb6f5b0696299ad1efb396dfb 164 Gene3D G3DSA:2.40.280.10 14 133 2.1E-50 T 14-09-2016 IPR023620 Small protein B ccrud_RS03900 204de91bb6f5b0696299ad1efb396dfb 164 PANTHER PTHR30308 2 161 7.0E-77 T 14-09-2016 ccrud_RS03900 204de91bb6f5b0696299ad1efb396dfb 164 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 16 138 1.0E-66 T 14-09-2016 IPR000037 SsrA-binding protein GO:0003723 ccrud_RS03900 204de91bb6f5b0696299ad1efb396dfb 164 Hamap MF_00023 SsrA-binding protein [smpB]. 1 161 68.425 T 14-09-2016 IPR000037 SsrA-binding protein GO:0003723 ccrud_RS03900 204de91bb6f5b0696299ad1efb396dfb 164 Pfam PF01668 SmpB protein 15 77 6.9E-29 T 14-09-2016 IPR000037 SsrA-binding protein GO:0003723 ccrud_RS03900 204de91bb6f5b0696299ad1efb396dfb 164 SUPERFAMILY SSF74982 10 138 3.92E-51 T 14-09-2016 IPR023620 Small protein B ccrud_RS03900 204de91bb6f5b0696299ad1efb396dfb 164 ProSitePatterns PS01317 SsrA-binding protein. 33 45 - T 14-09-2016 IPR020081 SsrA-binding protein, conserved site ccrud_RS03900 204de91bb6f5b0696299ad1efb396dfb 164 PANTHER PTHR30308:SF2 2 161 7.0E-77 T 14-09-2016 ccrud_RS05365 40d84fb83a06a41e728bf67f154752f5 277 PANTHER PTHR20941:SF8 5 268 8.2E-128 T 14-09-2016 ccrud_RS05365 40d84fb83a06a41e728bf67f154752f5 277 PANTHER PTHR20941 5 268 8.2E-128 T 14-09-2016 ccrud_RS05365 40d84fb83a06a41e728bf67f154752f5 277 SUPERFAMILY SSF51717 5 265 1.57E-78 T 14-09-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 ccrud_RS05365 40d84fb83a06a41e728bf67f154752f5 277 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 7 262 9.0E-85 T 14-09-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 ccrud_RS05365 40d84fb83a06a41e728bf67f154752f5 277 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 7 22 - T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS05365 40d84fb83a06a41e728bf67f154752f5 277 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 41 54 - T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS05365 40d84fb83a06a41e728bf67f154752f5 277 Pfam PF00809 Pterin binding enzyme 8 248 1.3E-67 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS05365 40d84fb83a06a41e728bf67f154752f5 277 Gene3D G3DSA:3.20.20.20 5 265 2.9E-84 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 PANTHER PTHR24221:SF161 10 526 1.1E-56 T 14-09-2016 ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 SUPERFAMILY SSF90123 4 287 6.28E-26 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 PANTHER PTHR24221 10 526 1.1E-56 T 14-09-2016 ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 ProSitePatterns PS00211 ABC transporters family signature. 446 460 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 SMART SM00382 347 518 2.9E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 Pfam PF00664 ABC transporter transmembrane region 43 276 3.7E-8 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 Gene3D G3DSA:3.40.50.300 325 540 1.8E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 Pfam PF00005 ABC transporter 339 474 4.9E-22 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 Gene3D G3DSA:1.20.1560.10 13 309 1.5E-19 T 14-09-2016 ccrud_RS09090 ac60e1de92b7f20b1d95e1a5885d9b5c 544 SUPERFAMILY SSF52540 316 539 2.23E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13365 9dca765339b2748a453141450a80617c 212 Gene3D G3DSA:3.40.50.2300 1 128 8.9E-29 T 14-09-2016 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 205 1.8E-19 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 SMART SM00448 2 123 2.6E-20 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 8.3E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 8.3E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 8.3E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 SMART SM00421 149 206 2.1E-23 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 Pfam PF00072 Response regulator receiver domain 4 124 1.4E-18 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 SUPERFAMILY SSF46894 139 212 6.8E-22 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 PANTHER PTHR26402 2 212 2.5E-65 T 14-09-2016 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 Gene3D G3DSA:1.10.10.10 129 212 1.5E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13365 9dca765339b2748a453141450a80617c 212 PANTHER PTHR26402:SF151 2 212 2.5E-65 T 14-09-2016 ccrud_RS13365 9dca765339b2748a453141450a80617c 212 SUPERFAMILY SSF52172 1 142 7.97E-26 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 Pfam PF00202 Aminotransferase class-III 42 424 1.2E-75 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 PANTHER PTHR11986:SF5 8 436 4.0E-181 T 14-09-2016 ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 Gene3D G3DSA:3.40.640.10 78 322 3.1E-71 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 Gene3D G3DSA:3.90.1150.10 7 77 1.9E-38 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 Gene3D G3DSA:3.90.1150.10 325 427 1.9E-38 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 241 277 - T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 11 431 94.629 T 14-09-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 PANTHER PTHR11986 8 436 4.0E-181 T 14-09-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 SUPERFAMILY SSF53383 8 427 2.04E-111 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS02275 e549b8a5fa2585cfbc222cf0199613fd 437 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 12 425 1.0E-170 T 14-09-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 ccrud_RS06385 c7606f09de6a703bc60a19b77528b50f 112 Pfam PF03729 Short repeat of unknown function (DUF308) 1 68 1.2E-6 T 14-09-2016 IPR005325 Protein of unknown function DUF308, membrane ccrud_RS06385 c7606f09de6a703bc60a19b77528b50f 112 Pfam PF03729 Short repeat of unknown function (DUF308) 56 95 0.0041 T 14-09-2016 IPR005325 Protein of unknown function DUF308, membrane ccrud_RS10410 6817dc49b6c1339f8adc4c770d028fdf 203 SUPERFAMILY SSF50118 93 200 4.25E-9 T 14-09-2016 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor ccrud_RS10410 6817dc49b6c1339f8adc4c770d028fdf 203 Pfam PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system 98 197 9.7E-6 T 14-09-2016 IPR003477 mRNA interferase PemK-like protein GO:0003677 ccrud_RS09575 be9739b4f6a4529a36cb5a9565bfc8fa 407 Pfam PF01757 Acyltransferase family 23 359 2.8E-19 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 SUPERFAMILY SSF52540 155 405 1.72E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 201 332 3.2E-45 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 Pfam PF01434 Peptidase family M41 395 603 8.6E-69 T 14-09-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 SUPERFAMILY SSF140990 415 613 2.88E-61 T 14-09-2016 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 205 224 1.1E-5 T 14-09-2016 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 495 514 1.1E-5 T 14-09-2016 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 SMART SM00382 197 336 1.6E-24 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 Gene3D G3DSA:3.40.50.300 156 342 1.5E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 116 604 1.1E-214 T 14-09-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 ProSitePatterns PS00674 AAA-protein family signature. 304 322 - T 14-09-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 5 620 35.005 T 14-09-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 PANTHER PTHR23076 1 646 1.6E-273 T 14-09-2016 ccrud_RS12150 07d8c4036a37e808fc8fc35a570d8c3a 835 Gene3D G3DSA:1.10.8.60 343 407 3.1E-21 T 14-09-2016 ccrud_RS04460 dd704868137fcbc6de37aef4d9a440c7 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 151 2.4E-29 T 14-09-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component ccrud_RS04460 dd704868137fcbc6de37aef4d9a440c7 179 PANTHER PTHR35011 4 146 8.0E-24 T 14-09-2016 ccrud_RS04460 dd704868137fcbc6de37aef4d9a440c7 179 PANTHER PTHR35011:SF2 4 146 8.0E-24 T 14-09-2016 ccrud_RS11790 649030de01ef6cab0de579a69654307c 363 PANTHER PTHR11695 27 357 6.5E-79 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS11790 649030de01ef6cab0de579a69654307c 363 Gene3D G3DSA:3.90.180.10 7 179 4.7E-41 T 14-09-2016 IPR011032 GroES-like ccrud_RS11790 649030de01ef6cab0de579a69654307c 363 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 40 147 3.4E-25 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS11790 649030de01ef6cab0de579a69654307c 363 SUPERFAMILY SSF50129 16 186 9.59E-38 T 14-09-2016 IPR011032 GroES-like ccrud_RS11790 649030de01ef6cab0de579a69654307c 363 SMART SM00829 22 355 0.0098 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS11790 649030de01ef6cab0de579a69654307c 363 PANTHER PTHR11695:SF285 27 357 6.5E-79 T 14-09-2016 ccrud_RS11790 649030de01ef6cab0de579a69654307c 363 SUPERFAMILY SSF51735 154 309 4.91E-30 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11790 649030de01ef6cab0de579a69654307c 363 Gene3D G3DSA:3.40.50.720 180 302 2.6E-31 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11790 649030de01ef6cab0de579a69654307c 363 Pfam PF00107 Zinc-binding dehydrogenase 187 316 3.1E-20 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS08770 95ae24862b43c61c0bc11998784d11d9 399 Pfam PF02163 Peptidase family M50 11 349 2.5E-47 T 14-09-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 ccrud_RS08770 95ae24862b43c61c0bc11998784d11d9 399 Pfam PF13180 PDZ domain 153 210 8.1E-7 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS08770 95ae24862b43c61c0bc11998784d11d9 399 PANTHER PTHR22939 154 396 3.0E-27 T 14-09-2016 ccrud_RS08770 95ae24862b43c61c0bc11998784d11d9 399 SMART SM00228 115 201 0.0057 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS08770 95ae24862b43c61c0bc11998784d11d9 399 SUPERFAMILY SSF50156 149 209 5.78E-12 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS08770 95ae24862b43c61c0bc11998784d11d9 399 Gene3D G3DSA:2.30.42.10 94 210 2.5E-18 T 14-09-2016 IPR001478 PDZ domain GO:0005515 ccrud_RS08770 95ae24862b43c61c0bc11998784d11d9 399 PANTHER PTHR22939:SF78 154 396 3.0E-27 T 14-09-2016 ccrud_RS03440 744cb5b8512d20d32fdfdea1a40be54a 305 Gene3D G3DSA:3.20.20.60 12 295 7.6E-94 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS03440 744cb5b8512d20d32fdfdea1a40be54a 305 ProSitePatterns PS00161 Isocitrate lyase signature. 126 131 - T 14-09-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 ccrud_RS03440 744cb5b8512d20d32fdfdea1a40be54a 305 Pfam PF13714 Phosphoenolpyruvate phosphomutase 21 260 1.2E-52 T 14-09-2016 ccrud_RS03440 744cb5b8512d20d32fdfdea1a40be54a 305 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 11 298 48.033 T 14-09-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747|UniPathway: UPA00946 ccrud_RS03440 744cb5b8512d20d32fdfdea1a40be54a 305 PANTHER PTHR21631 15 300 1.3E-110 T 14-09-2016 ccrud_RS03440 744cb5b8512d20d32fdfdea1a40be54a 305 SUPERFAMILY SSF51621 12 298 1.03E-93 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS03440 744cb5b8512d20d32fdfdea1a40be54a 305 PANTHER PTHR21631:SF4 15 300 1.3E-110 T 14-09-2016 ccrud_RS03440 744cb5b8512d20d32fdfdea1a40be54a 305 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 14 297 1.6E-131 T 14-09-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747|UniPathway: UPA00946 ccrud_RS04125 f19db4f8af6abdf5b0ef3bfd6608fc3e 164 Pfam PF13845 Septum formation 59 154 2.9E-12 T 14-09-2016 IPR026004 Septum formation-related domain ccrud_RS07830 30d9836a4bcc4ab82d3331eecd8f035a 363 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 293 305 - T 14-09-2016 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site ccrud_RS07830 30d9836a4bcc4ab82d3331eecd8f035a 363 PANTHER PTHR10804 34 360 4.6E-82 T 14-09-2016 ccrud_RS07830 30d9836a4bcc4ab82d3331eecd8f035a 363 Gene3D G3DSA:3.90.230.10 135 363 2.2E-72 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS07830 30d9836a4bcc4ab82d3331eecd8f035a 363 PANTHER PTHR10804:SF86 34 360 4.6E-82 T 14-09-2016 ccrud_RS07830 30d9836a4bcc4ab82d3331eecd8f035a 363 Pfam PF01321 Creatinase/Prolidase N-terminal domain 11 135 2.9E-23 T 14-09-2016 IPR000587 Creatinase, N-terminal GO:0016787 ccrud_RS07830 30d9836a4bcc4ab82d3331eecd8f035a 363 SUPERFAMILY SSF55920 92 358 1.31E-72 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS07830 30d9836a4bcc4ab82d3331eecd8f035a 363 Gene3D G3DSA:3.40.350.10 2 133 2.9E-22 T 14-09-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal ccrud_RS07830 30d9836a4bcc4ab82d3331eecd8f035a 363 SUPERFAMILY SSF53092 4 134 2.62E-23 T 14-09-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal ccrud_RS07830 30d9836a4bcc4ab82d3331eecd8f035a 363 Pfam PF00557 Metallopeptidase family M24 143 346 7.5E-59 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 Pfam PF13740 ACT domain 31 101 3.0E-13 T 14-09-2016 ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 PANTHER PTHR10000:SF7 199 414 4.4E-83 T 14-09-2016 ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 Gene3D G3DSA:3.30.70.260 132 205 1.2E-7 T 14-09-2016 ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 Pfam PF12710 haloacid dehalogenase-like hydrolase 206 373 1.4E-22 T 14-09-2016 ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 SUPERFAMILY SSF56784 203 412 6.8E-52 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 Gene3D G3DSA:3.30.70.260 30 103 3.9E-11 T 14-09-2016 ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 Gene3D G3DSA:3.40.50.1000 267 403 2.8E-45 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 194 407 2.7E-76 T 14-09-2016 ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 PANTHER PTHR10000 199 414 4.4E-83 T 14-09-2016 ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 Gene3D G3DSA:1.10.150.210 215 266 6.4E-25 T 14-09-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 SUPERFAMILY SSF55021 30 105 4.5E-9 T 14-09-2016 ccrud_RS11335 8707d7c6f1e3f204c84ada3953ff0818 434 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 205 375 1.9E-32 T 14-09-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 ccrud_RS02960 e7a30c51d0ca0204b5a4d884d8f713ed 147 Pfam PF00572 Ribosomal protein L13 14 138 7.5E-48 T 14-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02960 e7a30c51d0ca0204b5a4d884d8f713ed 147 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 143 25.08 T 14-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02960 e7a30c51d0ca0204b5a4d884d8f713ed 147 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 7 141 3.5E-53 T 14-09-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 ccrud_RS02960 e7a30c51d0ca0204b5a4d884d8f713ed 147 PIRSF PIRSF002181 2 147 9.2E-40 T 14-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02960 e7a30c51d0ca0204b5a4d884d8f713ed 147 Gene3D G3DSA:3.90.1180.10 3 141 1.2E-53 T 14-09-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 ccrud_RS02960 e7a30c51d0ca0204b5a4d884d8f713ed 147 SUPERFAMILY SSF52161 5 143 6.41E-51 T 14-09-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 ccrud_RS02960 e7a30c51d0ca0204b5a4d884d8f713ed 147 PANTHER PTHR11545 2 144 2.0E-53 T 14-09-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 Gene3D G3DSA:3.30.470.20 140 381 2.2E-81 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 Pfam PF02222 ATP-grasp domain 109 285 1.2E-48 T 14-09-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 SUPERFAMILY SSF56059 100 304 4.07E-55 T 14-09-2016 ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 3 367 38.134 T 14-09-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 SUPERFAMILY SSF51246 311 384 1.02E-16 T 14-09-2016 IPR011054 Rudiment single hybrid motif ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 4 370 9.2E-115 T 14-09-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 PANTHER PTHR11609 1 373 3.2E-118 T 14-09-2016 ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 Gene3D G3DSA:3.40.50.20 2 108 2.6E-28 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 SUPERFAMILY SSF52440 3 95 8.06E-23 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS03505 22ec22a0824a14688f8d60e00d5fe543 387 PANTHER PTHR11609:SF5 1 373 3.2E-118 T 14-09-2016 ccrud_RS08355 9c2e4f59233bd4bed1f5a2e2acc0d82a 330 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 316 7.1E-83 T 14-09-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 ccrud_RS08355 9c2e4f59233bd4bed1f5a2e2acc0d82a 330 SUPERFAMILY SSF53613 1 311 5.46E-53 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS08355 9c2e4f59233bd4bed1f5a2e2acc0d82a 330 Pfam PF00294 pfkB family carbohydrate kinase 11 310 4.9E-38 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB ccrud_RS08355 9c2e4f59233bd4bed1f5a2e2acc0d82a 330 PANTHER PTHR10584:SF170 1 320 3.1E-61 T 14-09-2016 ccrud_RS08355 9c2e4f59233bd4bed1f5a2e2acc0d82a 330 PANTHER PTHR10584 1 320 3.1E-61 T 14-09-2016 ccrud_RS08355 9c2e4f59233bd4bed1f5a2e2acc0d82a 330 Gene3D G3DSA:3.40.1190.20 35 315 1.7E-65 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS08355 9c2e4f59233bd4bed1f5a2e2acc0d82a 330 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 263 276 - T 14-09-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 ccrud_RS08355 9c2e4f59233bd4bed1f5a2e2acc0d82a 330 PIRSF PIRSF000535 1 324 3.6E-58 T 14-09-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 ccrud_RS08780 6942d64db3ddeff0d39b8029db8a8b8b 147 Pfam PF10939 Protein of unknown function (DUF2631) 6 69 5.4E-28 T 14-09-2016 IPR024341 Protein of unknown function DUF2631 ccrud_RS08780 6942d64db3ddeff0d39b8029db8a8b8b 147 ProDom PD069408 TRANSMEMBRANE MEMBRANE RV2876/MT2944.1 CGL2017/CG2211 ML1584 POSSIBLE P20 6 77 6.0E-34 T 14-09-2016 IPR024341 Protein of unknown function DUF2631 ccrud_RS13725 d27d8e58e6ba764a3f9560f5618318d8 262 Gene3D G3DSA:3.40.50.270 171 260 1.4E-10 T 14-09-2016 ccrud_RS13725 d27d8e58e6ba764a3f9560f5618318d8 262 PANTHER PTHR30505:SF3 3 155 2.2E-46 T 14-09-2016 ccrud_RS13725 d27d8e58e6ba764a3f9560f5618318d8 262 Gene3D G3DSA:3.40.930.10 3 147 3.1E-44 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS13725 d27d8e58e6ba764a3f9560f5618318d8 262 SUPERFAMILY SSF55804 2 146 2.44E-31 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 ccrud_RS13725 d27d8e58e6ba764a3f9560f5618318d8 262 SUPERFAMILY SSF52794 171 260 1.05E-14 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 ccrud_RS13725 d27d8e58e6ba764a3f9560f5618318d8 262 PANTHER PTHR30505 3 155 2.2E-46 T 14-09-2016 ccrud_RS13725 d27d8e58e6ba764a3f9560f5618318d8 262 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 7 146 2.3E-28 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS13725 d27d8e58e6ba764a3f9560f5618318d8 262 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 171 244 5.0E-11 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 216 408 2.2E-69 T 14-09-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 213 411 39.329 T 14-09-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 SUPERFAMILY SSF142695 214 387 2.35E-64 T 14-09-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 Pfam PF00925 GTP cyclohydrolase II 217 385 5.8E-68 T 14-09-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 PANTHER PTHR21327 11 410 2.0E-225 T 14-09-2016 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 SUPERFAMILY SSF55821 12 215 3.43E-81 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 Gene3D G3DSA:3.90.870.10 6 220 3.1E-95 T 14-09-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 PIRSF PIRSF001259 9 417 6.1E-168 T 14-09-2016 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 9 212 37.428 T 14-09-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 10 407 53.425 T 14-09-2016 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275|UniPathway: UPA00275 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 12 208 5.3E-70 T 14-09-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS07710 2506a60ec65ccb102276c5cbf803aa4c 422 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 15 206 1.6E-83 T 14-09-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 ccrud_RS05405 d13f28327630fb549c86c150dba1f87d 214 Pfam PF13578 Methyltransferase domain 70 163 2.4E-7 T 14-09-2016 ccrud_RS05405 d13f28327630fb549c86c150dba1f87d 214 PANTHER PTHR10509 67 212 1.6E-21 T 14-09-2016 ccrud_RS05405 d13f28327630fb549c86c150dba1f87d 214 PANTHER PTHR10509:SF18 67 212 1.6E-21 T 14-09-2016 ccrud_RS05405 d13f28327630fb549c86c150dba1f87d 214 SUPERFAMILY SSF53335 65 212 4.78E-16 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS05405 d13f28327630fb549c86c150dba1f87d 214 Gene3D G3DSA:3.40.50.150 7 212 1.5E-34 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS02865 ac6485d391cec1a766c283acc461da34 338 SUPERFAMILY SSF51735 6 334 1.27E-83 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02865 ac6485d391cec1a766c283acc461da34 338 Pfam PF16363 GDP-mannose 4,6 dehydratase 9 328 2.6E-55 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02865 ac6485d391cec1a766c283acc461da34 338 Gene3D G3DSA:3.90.25.10 230 335 2.5E-23 T 14-09-2016 ccrud_RS02865 ac6485d391cec1a766c283acc461da34 338 Gene3D G3DSA:3.40.50.720 8 229 4.6E-66 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02865 ac6485d391cec1a766c283acc461da34 338 PANTHER PTHR10366 7 335 2.4E-115 T 14-09-2016 ccrud_RS02865 ac6485d391cec1a766c283acc461da34 338 PANTHER PTHR10366:SF39 7 335 2.4E-115 T 14-09-2016 ccrud_RS02865 ac6485d391cec1a766c283acc461da34 338 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 8 337 3.6E-114 T 14-09-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 ccrud_RS01135 6372b469ef13708efa54fc22c0eb3d69 283 SUPERFAMILY SSF161098 21 269 3.83E-46 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS01135 6372b469ef13708efa54fc22c0eb3d69 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 87 275 7.3E-19 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS01135 6372b469ef13708efa54fc22c0eb3d69 283 Gene3D G3DSA:1.10.3720.10 24 271 1.6E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS01135 6372b469ef13708efa54fc22c0eb3d69 283 PANTHER PTHR30183 5 275 6.1E-53 T 14-09-2016 ccrud_RS07180 0165c05dcb1795cbc6ba9927120af3cf 537 Gene3D G3DSA:3.60.110.10 225 491 2.2E-32 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 ccrud_RS07180 0165c05dcb1795cbc6ba9927120af3cf 537 PANTHER PTHR23088:SF29 215 506 4.3E-52 T 14-09-2016 ccrud_RS07180 0165c05dcb1795cbc6ba9927120af3cf 537 Pfam PF00795 Carbon-nitrogen hydrolase 232 482 5.8E-17 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 ccrud_RS07180 0165c05dcb1795cbc6ba9927120af3cf 537 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 82 460 2.6E-79 T 14-09-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 ccrud_RS07180 0165c05dcb1795cbc6ba9927120af3cf 537 PANTHER PTHR23088 215 506 4.3E-52 T 14-09-2016 ccrud_RS07180 0165c05dcb1795cbc6ba9927120af3cf 537 SUPERFAMILY SSF56317 226 491 6.67E-41 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 ccrud_RS07180 0165c05dcb1795cbc6ba9927120af3cf 537 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 3 509 15.825 T 14-09-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 ccrud_RS06970 b8f7a21f4e472e54f411273152b92234 143 Gene3D G3DSA:2.60.200.20 44 139 2.3E-28 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ccrud_RS06970 b8f7a21f4e472e54f411273152b92234 143 PANTHER PTHR15715 21 131 8.3E-23 T 14-09-2016 ccrud_RS06970 b8f7a21f4e472e54f411273152b92234 143 SMART SM00240 67 117 8.2E-15 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ccrud_RS06970 b8f7a21f4e472e54f411273152b92234 143 SUPERFAMILY SSF49879 26 138 2.1E-30 T 14-09-2016 IPR008984 SMAD/FHA domain GO:0005515 ccrud_RS06970 b8f7a21f4e472e54f411273152b92234 143 Pfam PF00498 FHA domain 69 131 1.0E-18 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ccrud_RS04705 6c3d0f06d7a1bee670755d65de28b9fc 364 Pfam PF03631 Virulence factor BrkB 52 319 7.3E-40 T 14-09-2016 IPR017039 Virulence factor BrkB ccrud_RS04705 6c3d0f06d7a1bee670755d65de28b9fc 364 PANTHER PTHR30213 13 320 6.8E-39 T 14-09-2016 ccrud_RS04705 6c3d0f06d7a1bee670755d65de28b9fc 364 PIRSF PIRSF035875 24 334 2.5E-42 T 14-09-2016 IPR017039 Virulence factor BrkB ccrud_RS04705 6c3d0f06d7a1bee670755d65de28b9fc 364 PANTHER PTHR30213:SF2 13 320 6.8E-39 T 14-09-2016 ccrud_RS06155 4d30e33f84c426c74a225d9f5828f9c4 339 Pfam PF09084 NMT1/THI5 like 71 258 4.8E-18 T 14-09-2016 IPR015168 SsuA/THI5-like ccrud_RS06155 4d30e33f84c426c74a225d9f5828f9c4 339 PANTHER PTHR30024 72 258 1.6E-15 T 14-09-2016 ccrud_RS06155 4d30e33f84c426c74a225d9f5828f9c4 339 SUPERFAMILY SSF53850 73 265 1.57E-21 T 14-09-2016 ccrud_RS06155 4d30e33f84c426c74a225d9f5828f9c4 339 Gene3D G3DSA:3.40.190.10 124 250 5.8E-15 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 Pfam PF14711 Respiratory nitrate reductase beta C-terminal 359 439 1.0E-27 T 14-09-2016 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 PANTHER PTHR11938 135 144 3.2E-119 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 PANTHER PTHR11938:SF8 1 31 3.2E-119 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 PANTHER PTHR11938 1 31 3.2E-119 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 Gene3D G3DSA:3.30.70.20 197 236 1.8E-24 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 Gene3D G3DSA:1.10.3650.10 360 438 2.2E-27 T 14-09-2016 IPR029263 Respiratory nitrate reductase beta, C-terminal KEGG: 00910+1.7.99.4 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 Gene3D G3DSA:3.30.70.20 237 359 3.1E-68 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 Gene3D G3DSA:3.30.70.20 440 467 3.1E-68 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 PANTHER PTHR11938:SF8 135 144 3.2E-119 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 PANTHER PTHR11938 171 461 3.2E-119 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 Gene3D G3DSA:3.30.70.20 175 196 1.7E-10 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 Gene3D G3DSA:3.30.70.20 10 35 1.7E-10 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 Pfam PF13247 4Fe-4S dicluster domain 176 272 4.9E-36 T 14-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 TIGRFAM TIGR01660 narH: nitrate reductase, beta subunit 1 468 5.2E-229 T 14-09-2016 IPR006547 Nitrate reductase, beta subunit GO:0008940|GO:0009325|GO:0042126|GO:0055114 KEGG: 00910+1.7.99.4 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 PANTHER PTHR11938:SF8 171 461 3.2E-119 T 14-09-2016 ccrud_RS05735 23f5b80586d54288a534f3a39459f1fb 538 SUPERFAMILY SSF54862 1 470 2.93E-164 T 14-09-2016 ccrud_RS05880 859eafc31eab265cd02fcc5d1dd45c40 308 Pfam PF00085 Thioredoxin 59 142 1.1E-6 T 14-09-2016 IPR013766 Thioredoxin domain GO:0045454 ccrud_RS05880 859eafc31eab265cd02fcc5d1dd45c40 308 Gene3D G3DSA:1.25.40.10 234 308 8.4E-12 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS05880 859eafc31eab265cd02fcc5d1dd45c40 308 SUPERFAMILY SSF52833 24 146 1.05E-17 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS05880 859eafc31eab265cd02fcc5d1dd45c40 308 Pfam PF14561 Tetratricopeptide repeat 233 308 8.0E-16 T 14-09-2016 ccrud_RS05880 859eafc31eab265cd02fcc5d1dd45c40 308 Gene3D G3DSA:3.40.30.10 41 146 3.7E-16 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11445 84b5a658613d6c18a422365839a50c62 285 PANTHER PTHR24220 47 277 3.6E-124 T 14-09-2016 ccrud_RS11445 84b5a658613d6c18a422365839a50c62 285 PANTHER PTHR24220:SF484 47 277 3.6E-124 T 14-09-2016 ccrud_RS11445 84b5a658613d6c18a422365839a50c62 285 SUPERFAMILY SSF52540 49 264 2.6E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11445 84b5a658613d6c18a422365839a50c62 285 Pfam PF00005 ABC transporter 65 211 1.4E-28 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS11445 84b5a658613d6c18a422365839a50c62 285 Gene3D G3DSA:3.40.50.300 49 264 2.3E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11445 84b5a658613d6c18a422365839a50c62 285 SMART SM00382 74 260 7.5E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS10490 1deedd4cd1fed3fce88f46c05e5ef6b3 659 Pfam PF09349 OHCU decarboxylase 478 634 9.6E-24 T 14-09-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 ccrud_RS10490 1deedd4cd1fed3fce88f46c05e5ef6b3 659 TIGRFAM TIGR03173 pbuX: xanthine permease 40 452 4.6E-142 T 14-09-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 ccrud_RS10490 1deedd4cd1fed3fce88f46c05e5ef6b3 659 Gene3D G3DSA:1.10.3330.10 479 640 1.5E-33 T 14-09-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 ccrud_RS10490 1deedd4cd1fed3fce88f46c05e5ef6b3 659 PANTHER PTHR11119 28 452 5.6E-100 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS10490 1deedd4cd1fed3fce88f46c05e5ef6b3 659 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 368 388 - T 14-09-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 ccrud_RS10490 1deedd4cd1fed3fce88f46c05e5ef6b3 659 SUPERFAMILY SSF158694 473 637 3.01E-35 T 14-09-2016 ccrud_RS10490 1deedd4cd1fed3fce88f46c05e5ef6b3 659 Pfam PF00860 Permease family 36 420 1.0E-92 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS10490 1deedd4cd1fed3fce88f46c05e5ef6b3 659 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 32 451 7.1E-107 T 14-09-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 ccrud_RS10385 0bdff58b853518681383d03cd1999406 167 Pfam PF00188 Cysteine-rich secretory protein family 66 162 7.4E-13 T 14-09-2016 IPR014044 CAP domain ccrud_RS10385 0bdff58b853518681383d03cd1999406 167 Gene3D G3DSA:3.40.33.10 59 163 2.0E-10 T 14-09-2016 IPR014044 CAP domain ccrud_RS10385 0bdff58b853518681383d03cd1999406 167 SUPERFAMILY SSF55797 60 163 6.93E-16 T 14-09-2016 IPR014044 CAP domain ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 Pfam PF11799 impB/mucB/samB family C-terminal domain 238 346 3.1E-15 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 SUPERFAMILY SSF100879 242 341 7.46E-21 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 Hamap MF_01113 DNA polymerase IV [dinB]. 2 356 33.133 T 14-09-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 Gene3D G3DSA:3.30.70.270 70 166 4.0E-18 T 14-09-2016 ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 Pfam PF00817 impB/mucB/samB family 8 155 5.5E-35 T 14-09-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 Gene3D G3DSA:3.30.1490.100 244 347 1.5E-22 T 14-09-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 SUPERFAMILY SSF56672 3 240 1.6E-68 T 14-09-2016 ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 Gene3D G3DSA:1.10.150.20 169 241 2.6E-21 T 14-09-2016 ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 PANTHER PTHR11076 1 344 1.6E-110 T 14-09-2016 ccrud_RS09390 22d6b9a9a2a8ffeffbbaa91be3f85e27 466 Pfam PF11798 IMS family HHH motif 172 199 7.0E-6 T 14-09-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS02855 43d35fb171e23215180be9905001a393 352 SMART SM00710 183 213 1100.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02855 43d35fb171e23215180be9905001a393 352 SMART SM00710 150 182 310.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02855 43d35fb171e23215180be9905001a393 352 SMART SM00710 66 89 1100.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02855 43d35fb171e23215180be9905001a393 352 SMART SM00710 244 266 3.4 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02855 43d35fb171e23215180be9905001a393 352 SMART SM00710 93 114 830.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02855 43d35fb171e23215180be9905001a393 352 SMART SM00710 120 142 8500.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02855 43d35fb171e23215180be9905001a393 352 Pfam PF13229 Right handed beta helix region 63 266 1.5E-10 T 14-09-2016 ccrud_RS02855 43d35fb171e23215180be9905001a393 352 Gene3D G3DSA:2.160.20.10 33 337 2.6E-17 T 14-09-2016 IPR012334 Pectin lyase fold ccrud_RS02855 43d35fb171e23215180be9905001a393 352 SUPERFAMILY SSF51126 59 80 1.84E-20 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor ccrud_RS02855 43d35fb171e23215180be9905001a393 352 SUPERFAMILY SSF51126 107 340 1.84E-20 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 PANTHER PTHR20854 1 239 3.3E-65 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 SUPERFAMILY SSF56655 7 266 1.03E-66 T 14-09-2016 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 PANTHER PTHR20854:SF4 1 239 3.3E-65 T 14-09-2016 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 223 237 - T 14-09-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 PRINTS PR00377 Inositol monophosphatase superfamily signature 189 210 3.3E-29 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 PRINTS PR00377 Inositol monophosphatase superfamily signature 88 104 3.3E-29 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 PRINTS PR00377 Inositol monophosphatase superfamily signature 68 84 3.3E-29 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 PRINTS PR00377 Inositol monophosphatase superfamily signature 46 66 3.3E-29 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 PRINTS PR00377 Inositol monophosphatase superfamily signature 220 244 3.3E-29 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 Gene3D G3DSA:3.40.190.80 164 268 1.3E-28 T 14-09-2016 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 88 101 - T 14-09-2016 IPR020583 Inositol monophosphatase, metal-binding site ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 Pfam PF00459 Inositol monophosphatase family 10 241 4.7E-55 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS08225 08dea83e3969e041d889c298c3b56dba 280 Gene3D G3DSA:3.30.540.10 6 163 1.8E-40 T 14-09-2016 ccrud_RS08295 e62b2075bd32bfceb94a7bc447fc7490 330 Pfam PF09754 PAC2 family 32 248 9.9E-41 T 14-09-2016 IPR019151 Proteasome assembly chaperone 2 ccrud_RS08295 e62b2075bd32bfceb94a7bc447fc7490 330 PANTHER PTHR42301 1 316 5.0E-97 T 14-09-2016 ccrud_RS08295 e62b2075bd32bfceb94a7bc447fc7490 330 PANTHER PTHR42301:SF1 1 316 5.0E-97 T 14-09-2016 ccrud_RS08295 e62b2075bd32bfceb94a7bc447fc7490 330 SUPERFAMILY SSF159659 8 271 9.15E-84 T 14-09-2016 ccrud_RS08295 e62b2075bd32bfceb94a7bc447fc7490 330 PIRSF PIRSF028754 9 315 1.9E-124 T 14-09-2016 IPR008492 Protein of unknown function DUF774 ccrud_RS08295 e62b2075bd32bfceb94a7bc447fc7490 330 Gene3D G3DSA:1.10.287.100 230 273 1.4E-18 T 14-09-2016 IPR013028 Transcription factor IIA, alpha subunit, N-terminal GO:0006367 ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 149 2.9E-21 T 14-09-2016 IPR020069 Ribosomal protein L9, C-terminal ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 SUPERFAMILY SSF55658 1 57 3.31E-17 T 14-09-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 14-09-2016 IPR020070 Ribosomal protein L9, N-terminal ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 46 1.1E-19 T 14-09-2016 IPR020070 Ribosomal protein L9, N-terminal ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 149 6.1E-35 T 14-09-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 Gene3D G3DSA:3.10.430.100 61 149 1.8E-22 T 14-09-2016 IPR020069 Ribosomal protein L9, C-terminal ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 SUPERFAMILY SSF55653 61 149 1.44E-20 T 14-09-2016 IPR020069 Ribosomal protein L9, C-terminal ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 150 23.291 T 14-09-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 Gene3D G3DSA:3.40.5.10 1 51 4.6E-22 T 14-09-2016 IPR020070 Ribosomal protein L9, N-terminal ccrud_RS13490 e98e8f3cac30b2e89dafae391b165ef2 150 PANTHER PTHR21368 1 149 4.6E-39 T 14-09-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02320 57cf6417dc39440bc3b29a211dfc188c 548 Pfam PF00557 Metallopeptidase family M24 384 494 1.4E-5 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS02320 57cf6417dc39440bc3b29a211dfc188c 548 SUPERFAMILY SSF55920 312 547 6.28E-14 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS02320 57cf6417dc39440bc3b29a211dfc188c 548 Gene3D G3DSA:3.90.230.10 304 546 9.8E-8 T 14-09-2016 IPR000994 Peptidase M24, structural domain ccrud_RS04895 007f8adcfd0d98ae3ec6bbb19e6edb2d 434 PANTHER PTHR11680 13 433 1.5E-230 T 14-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 ccrud_RS04895 007f8adcfd0d98ae3ec6bbb19e6edb2d 434 Gene3D G3DSA:3.40.640.10 44 289 5.4E-102 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS04895 007f8adcfd0d98ae3ec6bbb19e6edb2d 434 PIRSF PIRSF000412 1 430 3.2E-150 T 14-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 ccrud_RS04895 007f8adcfd0d98ae3ec6bbb19e6edb2d 434 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 229 245 - T 14-09-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 ccrud_RS04895 007f8adcfd0d98ae3ec6bbb19e6edb2d 434 Gene3D G3DSA:3.90.1150.10 290 426 4.6E-45 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS04895 007f8adcfd0d98ae3ec6bbb19e6edb2d 434 SUPERFAMILY SSF53383 10 426 1.73E-165 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS04895 007f8adcfd0d98ae3ec6bbb19e6edb2d 434 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 14 426 48.921 T 14-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 ccrud_RS04895 007f8adcfd0d98ae3ec6bbb19e6edb2d 434 Pfam PF00464 Serine hydroxymethyltransferase 16 396 1.0E-154 T 14-09-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 ccrud_RS06395 7dace1581e9bd33381da95113d75b5aa 474 Pfam PF01425 Amidase 28 454 1.8E-106 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06395 7dace1581e9bd33381da95113d75b5aa 474 ProSitePatterns PS00571 Amidases signature. 156 187 - T 14-09-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06395 7dace1581e9bd33381da95113d75b5aa 474 PANTHER PTHR11895 4 471 1.3E-125 T 14-09-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06395 7dace1581e9bd33381da95113d75b5aa 474 Gene3D G3DSA:3.90.1300.10 5 468 4.4E-124 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS06395 7dace1581e9bd33381da95113d75b5aa 474 SUPERFAMILY SSF75304 6 471 3.53E-127 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS13985 f1f89e75fcef38b00c5daabfe866f340 123 Pfam PF00204 DNA gyrase B 1 105 5.6E-37 T 14-09-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS13985 f1f89e75fcef38b00c5daabfe866f340 123 Gene3D G3DSA:3.30.230.10 1 106 1.2E-41 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS13985 f1f89e75fcef38b00c5daabfe866f340 123 PRINTS PR01159 DNA gyrase subunit B signature 89 109 6.1E-23 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS13985 f1f89e75fcef38b00c5daabfe866f340 123 PRINTS PR01159 DNA gyrase subunit B signature 75 89 6.1E-23 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS13985 f1f89e75fcef38b00c5daabfe866f340 123 PRINTS PR01159 DNA gyrase subunit B signature 27 43 6.1E-23 T 14-09-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS13985 f1f89e75fcef38b00c5daabfe866f340 123 PANTHER PTHR10169 1 123 5.2E-36 T 14-09-2016 ccrud_RS13985 f1f89e75fcef38b00c5daabfe866f340 123 SUPERFAMILY SSF54211 1 106 4.36E-34 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 Gene3D G3DSA:1.10.8.60 209 281 1.5E-30 T 14-09-2016 ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 31 261 2.3E-110 T 14-09-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 Gene3D G3DSA:1.10.10.10 283 354 2.8E-30 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 SUPERFAMILY SSF52540 46 274 4.83E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 PANTHER PTHR13779 17 357 2.1E-159 T 14-09-2016 ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 Gene3D G3DSA:3.40.50.300 46 198 1.6E-28 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 276 353 9.0E-26 T 14-09-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 PANTHER PTHR13779:SF25 17 357 2.1E-159 T 14-09-2016 ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 49 352 3.5E-136 T 14-09-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 SMART SM00382 77 210 4.7E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 279 352 2.4E-28 T 14-09-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 SUPERFAMILY SSF46785 282 356 9.98E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08025 cad901a864e5df5ffc13bd3020faf0c9 363 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 363 162.549 T 14-09-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 ccrud_RS00115 c26addd05cf5335e7bc451e0b500e359 327 PANTHER PTHR30036:SF2 1 327 2.2E-70 T 14-09-2016 ccrud_RS00115 c26addd05cf5335e7bc451e0b500e359 327 Gene3D G3DSA:3.40.50.2300 43 162 9.3E-30 T 14-09-2016 ccrud_RS00115 c26addd05cf5335e7bc451e0b500e359 327 SUPERFAMILY SSF53822 47 316 1.38E-48 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS00115 c26addd05cf5335e7bc451e0b500e359 327 PANTHER PTHR30036 1 327 2.2E-70 T 14-09-2016 ccrud_RS00115 c26addd05cf5335e7bc451e0b500e359 327 Pfam PF13407 Periplasmic binding protein domain 53 289 2.4E-37 T 14-09-2016 IPR025997 Periplasmic binding protein ccrud_RS00115 c26addd05cf5335e7bc451e0b500e359 327 Gene3D G3DSA:3.40.50.2300 163 294 1.2E-18 T 14-09-2016 ccrud_RS01230 bea54b33a9a80c9a6092ceddcc73c569 244 TIGRFAM TIGR00697 TIGR00697: conserved hypothetical integral membrane protein 44 240 6.0E-31 T 14-09-2016 IPR003744 Protein of unknown function DUF165 ccrud_RS01230 bea54b33a9a80c9a6092ceddcc73c569 244 PANTHER PTHR34300 44 243 1.4E-39 T 14-09-2016 ccrud_RS01230 bea54b33a9a80c9a6092ceddcc73c569 244 Pfam PF02592 Putative vitamin uptake transporter 73 234 2.8E-44 T 14-09-2016 IPR003744 Protein of unknown function DUF165 ccrud_RS01230 bea54b33a9a80c9a6092ceddcc73c569 244 PANTHER PTHR34300:SF2 44 243 1.4E-39 T 14-09-2016 ccrud_RS04365 0ae4782f9d4d15d3cc4e9d9d4221046a 185 PANTHER PTHR13256 1 185 3.0E-27 T 14-09-2016 ccrud_RS04365 0ae4782f9d4d15d3cc4e9d9d4221046a 185 SUPERFAMILY SSF55729 3 164 2.9E-33 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS04365 0ae4782f9d4d15d3cc4e9d9d4221046a 185 Gene3D G3DSA:3.40.630.30 2 170 5.0E-41 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS04365 0ae4782f9d4d15d3cc4e9d9d4221046a 185 PANTHER PTHR13256:SF24 1 185 3.0E-27 T 14-09-2016 ccrud_RS04365 0ae4782f9d4d15d3cc4e9d9d4221046a 185 Pfam PF13302 Acetyltransferase (GNAT) domain 14 141 6.0E-14 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS10915 fc8a33f011c6beed4151732c7e8e892e 562 Gene3D G3DSA:3.40.190.10 214 322 2.7E-20 T 14-09-2016 ccrud_RS10915 fc8a33f011c6beed4151732c7e8e892e 562 SUPERFAMILY SSF53850 48 556 2.71E-96 T 14-09-2016 ccrud_RS10915 fc8a33f011c6beed4151732c7e8e892e 562 Gene3D G3DSA:3.90.76.10 61 213 3.0E-27 T 14-09-2016 ccrud_RS10915 fc8a33f011c6beed4151732c7e8e892e 562 PANTHER PTHR30290 13 555 1.6E-77 T 14-09-2016 ccrud_RS10915 fc8a33f011c6beed4151732c7e8e892e 562 TIGRFAM TIGR04028 SBP_KPN_01854: ABC transporter substrate binding protein, KPN_01854 family 51 556 1.1E-257 T 14-09-2016 IPR023920 ABC transporter, substrate-binding protein, KPN01854 ccrud_RS10915 fc8a33f011c6beed4151732c7e8e892e 562 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 93 443 1.2E-67 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain ccrud_RS10915 fc8a33f011c6beed4151732c7e8e892e 562 PIRSF PIRSF002741 18 558 6.0E-68 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ccrud_RS10915 fc8a33f011c6beed4151732c7e8e892e 562 Gene3D G3DSA:3.10.105.10 323 526 3.4E-39 T 14-09-2016 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 SMART SM00740 440 508 1.4E-17 T 14-09-2016 IPR005543 PASTA domain ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 SMART SM00740 509 573 8.5E-6 T 14-09-2016 IPR005543 PASTA domain ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 SMART SM00740 373 439 9.8E-14 T 14-09-2016 IPR005543 PASTA domain ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 Pfam PF03793 PASTA domain 378 439 2.8E-16 T 14-09-2016 IPR005543 PASTA domain ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 Pfam PF03793 PASTA domain 514 572 6.9E-10 T 14-09-2016 IPR005543 PASTA domain ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 Pfam PF03793 PASTA domain 578 644 1.3E-4 T 14-09-2016 IPR005543 PASTA domain ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 Pfam PF03793 PASTA domain 446 507 1.2E-17 T 14-09-2016 IPR005543 PASTA domain ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 PANTHER PTHR24362 4 317 2.4E-99 T 14-09-2016 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 PANTHER PTHR24362 534 592 2.4E-99 T 14-09-2016 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 15 38 - T 14-09-2016 IPR017441 Protein kinase, ATP binding site GO:0005524 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 PANTHER PTHR24362:SF160 534 592 2.4E-99 T 14-09-2016 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 Gene3D G3DSA:1.10.510.10 78 274 9.9E-48 T 14-09-2016 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 SMART SM00220 9 283 1.3E-52 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 PANTHER PTHR24362:SF160 4 317 2.4E-99 T 14-09-2016 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 132 144 - T 14-09-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 Pfam PF00069 Protein kinase domain 9 220 8.1E-48 T 14-09-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 Gene3D G3DSA:3.30.200.20 4 77 6.3E-25 T 14-09-2016 ccrud_RS00150 901fc5348d6fc2b4e64612a7aa72624c 656 SUPERFAMILY SSF56112 5 277 7.42E-71 T 14-09-2016 IPR011009 Protein kinase-like domain ccrud_RS07725 2d1d3cb09a5ed58ea0a24ed8982491fa 219 Gene3D G3DSA:3.20.20.70 5 217 1.6E-88 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS07725 2d1d3cb09a5ed58ea0a24ed8982491fa 219 SUPERFAMILY SSF51366 6 216 5.18E-68 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS07725 2d1d3cb09a5ed58ea0a24ed8982491fa 219 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 7 215 6.3E-81 T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 ccrud_RS07725 2d1d3cb09a5ed58ea0a24ed8982491fa 219 PANTHER PTHR11749 4 216 2.4E-111 T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 ccrud_RS07725 2d1d3cb09a5ed58ea0a24ed8982491fa 219 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 ccrud_RS07725 2d1d3cb09a5ed58ea0a24ed8982491fa 219 Pfam PF00834 Ribulose-phosphate 3 epimerase family 8 202 4.9E-75 T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 ccrud_RS07725 2d1d3cb09a5ed58ea0a24ed8982491fa 219 PIRSF PIRSF001461 2 219 2.3E-86 T 14-09-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 ccrud_RS07725 2d1d3cb09a5ed58ea0a24ed8982491fa 219 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 135 157 - T 14-09-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 27 43 4.1E-28 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 207 217 4.1E-28 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 154 175 4.1E-28 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 77 96 4.1E-28 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 13 341 41.954 T 14-09-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 PANTHER PTHR10055 8 344 4.1E-169 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 Pfam PF00579 tRNA synthetases class I (W and Y) 11 294 5.5E-78 T 14-09-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 SUPERFAMILY SSF52374 15 340 6.0E-93 T 14-09-2016 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 PANTHER PTHR10055:SF10 8 344 4.1E-169 T 14-09-2016 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 14 340 2.7E-99 T 14-09-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 Gene3D G3DSA:3.40.50.620 13 219 6.5E-86 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS03365 d8a6a8a3d4913d4cdc25a31e3b64c332 345 Gene3D G3DSA:1.10.240.10 220 308 2.8E-15 T 14-09-2016 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 Gene3D G3DSA:2.60.120.10 245 280 1.7E-56 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 Gene3D G3DSA:2.60.120.10 7 136 1.7E-56 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PIRSF PIRSF001480 1 394 2.2E-99 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 Pfam PF01238 Phosphomannose isomerase type I 4 360 9.6E-71 T 14-09-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PANTHER PTHR10309:SF0 1 392 2.9E-110 T 14-09-2016 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 ProSitePatterns PS00965 Phosphomannose isomerase type I signature 1. 122 130 - T 14-09-2016 IPR018050 Phosphomannose isomerase, type I, conserved site GO:0004476 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PANTHER PTHR10309 1 392 2.9E-110 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 TIGRFAM TIGR00218 manA: mannose-6-phosphate isomerase, class I 5 385 6.7E-78 T 14-09-2016 IPR001250 Mannose-6-phosphate isomerase, type I GO:0004476|GO:0005975|GO:0008270 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 SUPERFAMILY SSF51182 2 378 1.27E-95 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 Gene3D G3DSA:2.60.120.10 294 381 6.6E-17 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 Gene3D G3DSA:1.10.441.10 137 238 2.0E-24 T 14-09-2016 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 Gene3D G3DSA:1.10.441.10 281 293 2.0E-24 T 14-09-2016 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PRINTS PR00714 Phosphomannose isomerase type I signature 77 98 6.5E-63 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PRINTS PR00714 Phosphomannose isomerase type I signature 32 47 6.5E-63 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PRINTS PR00714 Phosphomannose isomerase type I signature 4 22 6.5E-63 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PRINTS PR00714 Phosphomannose isomerase type I signature 227 242 6.5E-63 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PRINTS PR00714 Phosphomannose isomerase type I signature 243 262 6.5E-63 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PRINTS PR00714 Phosphomannose isomerase type I signature 122 145 6.5E-63 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PRINTS PR00714 Phosphomannose isomerase type I signature 262 281 6.5E-63 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS03645 4cba231c9dacfbe25bb241a677875d53 394 PRINTS PR00714 Phosphomannose isomerase type I signature 281 300 6.5E-63 T 14-09-2016 IPR016305 Mannose-6-phosphate isomerase GO:0004476|GO:0009298 KEGG: 00051+5.3.1.8|KEGG: 00520+5.3.1.8|MetaCyc: PWY-3861|MetaCyc: PWY-3881|MetaCyc: PWY-5659|MetaCyc: PWY-6992|MetaCyc: PWY-7456|MetaCyc: PWY-7586|MetaCyc: PWY-882|UniPathway: UPA00126 ccrud_RS06670 fde171f3f45b9d7a26101057bbed81ea 324 SUPERFAMILY SSF52266 60 323 9.92E-65 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain ccrud_RS06670 fde171f3f45b9d7a26101057bbed81ea 324 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 63 310 2.9E-13 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain ccrud_RS06670 fde171f3f45b9d7a26101057bbed81ea 324 Gene3D G3DSA:3.40.50.1110 55 322 1.5E-45 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 192 423 3.3E-16 T 14-09-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 Gene3D G3DSA:2.102.10.10 30 125 1.9E-19 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 SUPERFAMILY SSF50022 14 156 4.84E-47 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 PANTHER PTHR21266 19 399 3.1E-56 T 14-09-2016 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 PANTHER PTHR21266:SF30 19 399 3.1E-56 T 14-09-2016 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 182 204 1.4E-40 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 27 52 1.4E-40 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 99 119 1.4E-40 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 141 167 1.4E-40 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 78 98 1.4E-40 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 57 72 1.4E-40 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 Pfam PF00355 Rieske [2Fe-2S] domain 42 125 1.8E-20 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 SUPERFAMILY SSF55961 157 424 7.85E-52 T 14-09-2016 ccrud_RS12905 386bdc3f79c30aa9a95da223030cfdc1 425 Gene3D G3DSA:3.90.380.10 131 424 1.7E-78 T 14-09-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 SUPERFAMILY SSF102114 54 342 1.15E-67 T 14-09-2016 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 PANTHER PTHR22960:SF10 51 365 2.2E-108 T 14-09-2016 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 Pfam PF13394 4Fe-4S single cluster domain 70 156 6.9E-8 T 14-09-2016 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 54 389 39.726 T 14-09-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 54 389 4.2E-110 T 14-09-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 PANTHER PTHR22960 51 365 2.2E-108 T 14-09-2016 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 Gene3D G3DSA:3.20.20.70 54 366 3.0E-73 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 Pfam PF06463 Molybdenum Cofactor Synthesis C 240 371 4.1E-37 T 14-09-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 Pfam PF04055 Radical SAM superfamily 68 232 9.9E-31 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 SMART SM00729 63 272 6.7E-8 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 ccrud_RS05780 986bd9b82cd3818399a7cabf2616463f 389 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 69 80 - T 14-09-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS04875 7a1bd9a1878d74b5d6ca0654128b6d94 256 Gene3D G3DSA:3.40.1180.10 11 256 9.9E-87 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS04875 7a1bd9a1878d74b5d6ca0654128b6d94 256 SUPERFAMILY SSF64005 22 250 7.85E-75 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS04875 7a1bd9a1878d74b5d6ca0654128b6d94 256 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 201 218 - T 14-09-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 ccrud_RS04875 7a1bd9a1878d74b5d6ca0654128b6d94 256 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 25 256 35.781 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS04875 7a1bd9a1878d74b5d6ca0654128b6d94 256 PANTHER PTHR10291 8 256 1.6E-121 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS04875 7a1bd9a1878d74b5d6ca0654128b6d94 256 PANTHER PTHR10291:SF1 8 256 1.6E-121 T 14-09-2016 ccrud_RS04875 7a1bd9a1878d74b5d6ca0654128b6d94 256 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 26 255 8.7E-67 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS04875 7a1bd9a1878d74b5d6ca0654128b6d94 256 Pfam PF01255 Putative undecaprenyl diphosphate synthase 33 255 2.1E-72 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS01690 1a50c44116f07b019b9e44ca3770c5a5 340 Gene3D G3DSA:3.30.420.10 183 321 2.8E-13 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS01690 1a50c44116f07b019b9e44ca3770c5a5 340 Pfam PF00075 RNase H 210 313 2.2E-9 T 14-09-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 ccrud_RS01690 1a50c44116f07b019b9e44ca3770c5a5 340 SUPERFAMILY SSF53098 181 318 2.15E-13 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS13625 84f758ff0b1b720927522b984b8cc2eb 204 Pfam PF00881 Nitroreductase family 21 181 7.3E-22 T 14-09-2016 IPR029479 Nitroreductase ccrud_RS13625 84f758ff0b1b720927522b984b8cc2eb 204 PANTHER PTHR23026:SF110 1 202 1.5E-71 T 14-09-2016 ccrud_RS13625 84f758ff0b1b720927522b984b8cc2eb 204 SUPERFAMILY SSF55469 19 202 6.67E-45 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 ccrud_RS13625 84f758ff0b1b720927522b984b8cc2eb 204 Gene3D G3DSA:3.40.109.10 8 202 3.8E-44 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 ccrud_RS13625 84f758ff0b1b720927522b984b8cc2eb 204 PANTHER PTHR23026 1 202 1.5E-71 T 14-09-2016 ccrud_RS00190 f29426c91e5956930fd670b7b5d6fd23 196 SUPERFAMILY SSF52980 64 163 4.02E-9 T 14-09-2016 IPR011335 Restriction endonuclease type II-like ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Pfam PF01751 Toprim domain 21 142 2.0E-25 T 14-09-2016 IPR006171 Toprim domain ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Pfam PF13368 Topoisomerase C-terminal repeat 832 885 6.6E-15 T 14-09-2016 IPR025589 Topoisomerase C-terminal repeat ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Pfam PF13368 Topoisomerase C-terminal repeat 901 950 1.6E-17 T 14-09-2016 IPR025589 Topoisomerase C-terminal repeat ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Pfam PF13368 Topoisomerase C-terminal repeat 718 828 7.6E-10 T 14-09-2016 IPR025589 Topoisomerase C-terminal repeat ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Pfam PF13368 Topoisomerase C-terminal repeat 654 710 2.3E-10 T 14-09-2016 IPR025589 Topoisomerase C-terminal repeat ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 SMART SM00437 296 567 1.8E-116 T 14-09-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Pfam PF01131 DNA topoisomerase 157 604 1.6E-119 T 14-09-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 PANTHER PTHR11390:SF27 274 669 5.2E-263 T 14-09-2016 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 PANTHER PTHR11390:SF27 16 257 5.2E-263 T 14-09-2016 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 SMART SM00436 133 221 5.9E-45 T 14-09-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Gene3D G3DSA:3.40.50.140 18 163 3.9E-46 T 14-09-2016 IPR006171 Toprim domain ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 530 544 6.3E-35 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 107 120 6.3E-35 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 191 209 6.3E-35 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 417 433 6.3E-35 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 338 347 6.3E-35 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Gene3D G3DSA:1.10.460.10 514 608 7.5E-50 T 14-09-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Gene3D G3DSA:1.10.460.10 164 211 7.5E-50 T 14-09-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 333 347 - T 14-09-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Hamap MF_00952 DNA topoisomerase 1 [topA]. 19 844 51.708 T 14-09-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 21 672 1.6E-238 T 14-09-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 SUPERFAMILY SSF56712 19 608 1.31E-171 T 14-09-2016 IPR023405 DNA topoisomerase, type IA, core domain ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 SMART SM00493 19 133 2.6E-31 T 14-09-2016 IPR006171 Toprim domain ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Gene3D G3DSA:2.70.20.10 213 360 9.7E-26 T 14-09-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 Gene3D G3DSA:2.70.20.10 365 513 2.6E-27 T 14-09-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 PANTHER PTHR11390 274 669 5.2E-263 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 ccrud_RS01595 e1adba363c75b91001e0317cc47918a6 1023 PANTHER PTHR11390 16 257 5.2E-263 T 14-09-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 ccrud_RS00685 6cc9c31f91aab7bc68305976da93b16f 424 PANTHER PTHR23513 2 407 7.1E-83 T 14-09-2016 ccrud_RS00685 6cc9c31f91aab7bc68305976da93b16f 424 SUPERFAMILY SSF103473 14 415 9.81E-36 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS00685 6cc9c31f91aab7bc68305976da93b16f 424 Gene3D G3DSA:1.20.1250.20 14 196 7.2E-18 T 14-09-2016 ccrud_RS00685 6cc9c31f91aab7bc68305976da93b16f 424 Gene3D G3DSA:1.20.1250.20 224 411 6.1E-9 T 14-09-2016 ccrud_RS00685 6cc9c31f91aab7bc68305976da93b16f 424 Pfam PF05977 Transmembrane secretion effector 11 409 1.3E-27 T 14-09-2016 IPR010290 Transmembrane secretion effector ccrud_RS00685 6cc9c31f91aab7bc68305976da93b16f 424 PANTHER PTHR23513:SF9 2 407 7.1E-83 T 14-09-2016 ccrud_RS01150 444874b68d21ca37f59160db73fba26d 304 SMART SM00382 28 208 1.3E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS01150 444874b68d21ca37f59160db73fba26d 304 Pfam PF00005 ABC transporter 19 159 2.0E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS01150 444874b68d21ca37f59160db73fba26d 304 PANTHER PTHR24220 5 232 4.1E-86 T 14-09-2016 ccrud_RS01150 444874b68d21ca37f59160db73fba26d 304 ProSitePatterns PS00211 ABC transporters family signature. 131 145 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS01150 444874b68d21ca37f59160db73fba26d 304 Gene3D G3DSA:3.40.50.300 4 230 5.3E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01150 444874b68d21ca37f59160db73fba26d 304 SUPERFAMILY SSF52540 4 237 7.48E-65 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08430 d723a70125e44069bbcba5d0ef7a0d7a 250 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS08430 d723a70125e44069bbcba5d0ef7a0d7a 250 Pfam PF00005 ABC transporter 25 173 2.6E-37 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS08430 d723a70125e44069bbcba5d0ef7a0d7a 250 Gene3D G3DSA:3.40.50.300 8 244 4.1E-83 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08430 d723a70125e44069bbcba5d0ef7a0d7a 250 PANTHER PTHR24220:SF474 11 250 4.6E-147 T 14-09-2016 ccrud_RS08430 d723a70125e44069bbcba5d0ef7a0d7a 250 SUPERFAMILY SSF52540 9 243 2.13E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08430 d723a70125e44069bbcba5d0ef7a0d7a 250 SMART SM00382 34 221 3.6E-18 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08430 d723a70125e44069bbcba5d0ef7a0d7a 250 PIRSF PIRSF039085 6 249 5.2E-109 T 14-09-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 ccrud_RS08430 d723a70125e44069bbcba5d0ef7a0d7a 250 PANTHER PTHR24220 11 250 4.6E-147 T 14-09-2016 ccrud_RS10690 77a6f82c563e4a250292d07f53ecfd3e 97 PIRSF PIRSF001486 1 94 7.4E-41 T 14-09-2016 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 ccrud_RS10690 77a6f82c563e4a250292d07f53ecfd3e 97 SUPERFAMILY SSF54909 1 91 1.66E-34 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS10690 77a6f82c563e4a250292d07f53ecfd3e 97 Pfam PF02426 Muconolactone delta-isomerase 1 89 2.7E-35 T 14-09-2016 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 ccrud_RS10690 77a6f82c563e4a250292d07f53ecfd3e 97 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 1.0E-25 T 14-09-2016 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 ccrud_RS10690 77a6f82c563e4a250292d07f53ecfd3e 97 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 8.7E-43 T 14-09-2016 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 ccrud_RS05010 6c09ee25de6c55a2076d02b3b97a487f 413 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 14 404 8.0E-116 T 14-09-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 ccrud_RS05010 6c09ee25de6c55a2076d02b3b97a487f 413 Pfam PF02601 Exonuclease VII, large subunit 130 341 1.6E-60 T 14-09-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 ccrud_RS05010 6c09ee25de6c55a2076d02b3b97a487f 413 Pfam PF02601 Exonuclease VII, large subunit 324 404 3.1E-7 T 14-09-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 ccrud_RS05010 6c09ee25de6c55a2076d02b3b97a487f 413 PANTHER PTHR30008 4 405 9.7E-122 T 14-09-2016 ccrud_RS05010 6c09ee25de6c55a2076d02b3b97a487f 413 PANTHER PTHR30008:SF0 4 405 9.7E-122 T 14-09-2016 ccrud_RS05010 6c09ee25de6c55a2076d02b3b97a487f 413 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 9 407 23.552 T 14-09-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 ccrud_RS05010 6c09ee25de6c55a2076d02b3b97a487f 413 Pfam PF13742 OB-fold nucleic acid binding domain 13 107 1.3E-15 T 14-09-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 ccrud_RS11260 4da4d8c1d435562392de5ad190b30210 208 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 1 201 47.656 T 14-09-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 ccrud_RS11260 4da4d8c1d435562392de5ad190b30210 208 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 2 198 1.1E-45 T 14-09-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 ccrud_RS11260 4da4d8c1d435562392de5ad190b30210 208 Pfam PF01725 Ham1 family 3 197 2.4E-49 T 14-09-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 ccrud_RS11260 4da4d8c1d435562392de5ad190b30210 208 SUPERFAMILY SSF52972 1 198 3.92E-60 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like ccrud_RS11260 4da4d8c1d435562392de5ad190b30210 208 Gene3D G3DSA:3.90.950.10 1 199 1.0E-71 T 14-09-2016 IPR029001 Inosine triphosphate pyrophosphatase-like ccrud_RS11260 4da4d8c1d435562392de5ad190b30210 208 PANTHER PTHR11067 1 207 5.1E-57 T 14-09-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 ccrud_RS11260 4da4d8c1d435562392de5ad190b30210 208 PANTHER PTHR11067:SF9 1 207 5.1E-57 T 14-09-2016 ccrud_RS03080 d3cc55555c3d3e4a9d841bc49ad3f366 374 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 17 300 4.1E-29 T 14-09-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 ccrud_RS03080 d3cc55555c3d3e4a9d841bc49ad3f366 374 TIGRFAM TIGR01304 IMP_DH_rel_2: IMP dehydrogenase family protein 5 373 4.3E-190 T 14-09-2016 IPR005992 IMP dehydrogenase-related 2 GO:0016491|GO:0055114 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- ccrud_RS03080 d3cc55555c3d3e4a9d841bc49ad3f366 374 Gene3D G3DSA:3.20.20.70 17 371 2.6E-72 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS03080 d3cc55555c3d3e4a9d841bc49ad3f366 374 SUPERFAMILY SSF51412 118 371 7.02E-56 T 14-09-2016 ccrud_RS03080 d3cc55555c3d3e4a9d841bc49ad3f366 374 SUPERFAMILY SSF51412 11 78 7.02E-56 T 14-09-2016 ccrud_RS03080 d3cc55555c3d3e4a9d841bc49ad3f366 374 SMART SM01240 15 374 3.7E-13 T 14-09-2016 ccrud_RS02660 121e3d7c928e69634ad15cab17b1cc1f 122 Pfam PF00238 Ribosomal protein L14p/L23e 2 122 2.9E-54 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 ccrud_RS02660 121e3d7c928e69634ad15cab17b1cc1f 122 SUPERFAMILY SSF50193 2 122 4.32E-50 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 ccrud_RS02660 121e3d7c928e69634ad15cab17b1cc1f 122 PANTHER PTHR11761 2 122 1.6E-73 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 ccrud_RS02660 121e3d7c928e69634ad15cab17b1cc1f 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 1.9E-56 T 14-09-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 ccrud_RS02660 121e3d7c928e69634ad15cab17b1cc1f 122 SMART SM01374 1 122 1.3E-85 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 ccrud_RS02660 121e3d7c928e69634ad15cab17b1cc1f 122 Gene3D G3DSA:2.40.150.20 2 122 2.0E-53 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 ccrud_RS02660 121e3d7c928e69634ad15cab17b1cc1f 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 14-09-2016 IPR019972 Ribosomal protein L14P, conserved site ccrud_RS02660 121e3d7c928e69634ad15cab17b1cc1f 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.359 T 14-09-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 21 494 2.2E-154 T 14-09-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 SMART SM00116 170 218 5.6E-4 T 14-09-2016 IPR000644 CBS domain ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 SMART SM00116 109 157 1.9E-7 T 14-09-2016 IPR000644 CBS domain ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 PANTHER PTHR11911:SF6 312 505 9.4E-223 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 PANTHER PTHR11911:SF6 20 294 9.4E-223 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 PANTHER PTHR11911 20 294 9.4E-223 T 14-09-2016 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 SMART SM01240 20 494 0.0 T 14-09-2016 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 21 476 2.4E-185 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 307 319 - T 14-09-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 Pfam PF00571 CBS domain 162 215 7.1E-5 T 14-09-2016 IPR000644 CBS domain ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 Pfam PF00571 CBS domain 106 153 2.2E-9 T 14-09-2016 IPR000644 CBS domain ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 PANTHER PTHR11911 312 505 9.4E-223 T 14-09-2016 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 SUPERFAMILY SSF51412 229 497 5.36E-114 T 14-09-2016 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 SUPERFAMILY SSF51412 16 103 5.36E-114 T 14-09-2016 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 Gene3D G3DSA:3.20.20.70 20 506 3.9E-191 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 PIRSF PIRSF000130 13 506 2.3E-196 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 21 506 81.066 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 ccrud_RS03075 a75e86c8b313a9da1afafa61fbf7dcbd 506 SUPERFAMILY SSF54631 77 215 7.33E-28 T 14-09-2016 ccrud_RS07760 dd979434c6306dc9911b462b45cdd741 95 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 21 90 3.2E-22 T 14-09-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS07760 dd979434c6306dc9911b462b45cdd741 95 SUPERFAMILY SSF63562 22 93 7.5E-22 T 14-09-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS07760 dd979434c6306dc9911b462b45cdd741 95 Pfam PF01192 RNA polymerase Rpb6 28 90 3.0E-14 T 14-09-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS07760 dd979434c6306dc9911b462b45cdd741 95 Gene3D G3DSA:3.90.940.10 21 94 7.9E-30 T 14-09-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS07760 dd979434c6306dc9911b462b45cdd741 95 PANTHER PTHR34476 22 95 1.2E-19 T 14-09-2016 ccrud_RS07760 dd979434c6306dc9911b462b45cdd741 95 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 21 93 15.148 T 14-09-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS07760 dd979434c6306dc9911b462b45cdd741 95 SMART SM01409 28 92 9.9E-15 T 14-09-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS12415 a22604c91ed550350d9523dacb9bee73 170 PANTHER PTHR22769:SF24 1 152 5.9E-23 T 14-09-2016 ccrud_RS12415 a22604c91ed550350d9523dacb9bee73 170 PANTHER PTHR22769 1 152 5.9E-23 T 14-09-2016 ccrud_RS12415 a22604c91ed550350d9523dacb9bee73 170 Gene3D G3DSA:3.90.79.10 18 165 1.7E-30 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS12415 a22604c91ed550350d9523dacb9bee73 170 SUPERFAMILY SSF55811 18 163 2.44E-24 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS12415 a22604c91ed550350d9523dacb9bee73 170 Pfam PF00293 NUDIX domain 22 149 2.0E-17 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS01015 3e69f093c53f64775539ccd0fb9c8a56 488 PANTHER PTHR13878 28 486 8.9E-105 T 14-09-2016 ccrud_RS01015 3e69f093c53f64775539ccd0fb9c8a56 488 Gene3D G3DSA:3.30.465.10 98 216 1.2E-27 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 ccrud_RS01015 3e69f093c53f64775539ccd0fb9c8a56 488 Pfam PF04030 D-arabinono-1,4-lactone oxidase 425 484 4.4E-7 T 14-09-2016 IPR007173 D-arabinono-1,4-lactone oxidase GO:0003885|GO:0016020|GO:0055114 ccrud_RS01015 3e69f093c53f64775539ccd0fb9c8a56 488 SUPERFAMILY SSF56176 47 215 2.38E-38 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 ccrud_RS01015 3e69f093c53f64775539ccd0fb9c8a56 488 PANTHER PTHR13878:SF52 28 486 8.9E-105 T 14-09-2016 ccrud_RS01015 3e69f093c53f64775539ccd0fb9c8a56 488 Pfam PF01565 FAD binding domain 68 181 2.0E-25 T 14-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ccrud_RS00270 ddc840218d17b0afb3dfc5c8c2cd0f30 248 PANTHER PTHR30269:SF14 1 247 2.1E-59 T 14-09-2016 ccrud_RS00270 ddc840218d17b0afb3dfc5c8c2cd0f30 248 Pfam PF01925 Sulfite exporter TauE/SafE 9 241 4.2E-52 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 ccrud_RS00270 ddc840218d17b0afb3dfc5c8c2cd0f30 248 PANTHER PTHR30269 1 247 2.1E-59 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 ccrud_RS09955 24191f645d89ee745ab515f7d9d91ecb 269 Gene3D G3DSA:3.40.710.10 11 263 1.4E-35 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS09955 24191f645d89ee745ab515f7d9d91ecb 269 PANTHER PTHR22935 1 252 6.9E-67 T 14-09-2016 ccrud_RS09955 24191f645d89ee745ab515f7d9d91ecb 269 Pfam PF00144 Beta-lactamase 15 249 7.3E-26 T 14-09-2016 IPR001466 Beta-lactamase-related ccrud_RS09955 24191f645d89ee745ab515f7d9d91ecb 269 SUPERFAMILY SSF56601 7 263 9.82E-46 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS09955 24191f645d89ee745ab515f7d9d91ecb 269 PANTHER PTHR22935:SF57 1 252 6.9E-67 T 14-09-2016 ccrud_RS07470 7ff4755ed0ec0ba45d6947ee01bfbc32 142 PANTHER PTHR33507 4 142 1.5E-23 T 14-09-2016 ccrud_RS07470 7ff4755ed0ec0ba45d6947ee01bfbc32 142 SUPERFAMILY SSF141322 81 140 3.79E-6 T 14-09-2016 ccrud_RS07470 7ff4755ed0ec0ba45d6947ee01bfbc32 142 Pfam PF01957 NfeD-like C-terminal, partner-binding 5 141 2.3E-27 T 14-09-2016 IPR002810 NfeD-like, C-terminal domain ccrud_RS07470 7ff4755ed0ec0ba45d6947ee01bfbc32 142 Gene3D G3DSA:2.40.50.140 82 141 7.2E-24 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS04500 98151fbd8f50b6af66ccaa88f61de89b 293 SUPERFAMILY SSF53335 25 289 1.1E-63 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS04500 98151fbd8f50b6af66ccaa88f61de89b 293 SMART SM00650 40 215 2.9E-72 T 14-09-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 ccrud_RS04500 98151fbd8f50b6af66ccaa88f61de89b 293 Pfam PF00398 Ribosomal RNA adenine dimethylase 28 281 3.4E-46 T 14-09-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm ccrud_RS04500 98151fbd8f50b6af66ccaa88f61de89b 293 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 25 284 9.5E-75 T 14-09-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 ccrud_RS04500 98151fbd8f50b6af66ccaa88f61de89b 293 Gene3D G3DSA:1.10.8.100 223 288 9.2E-20 T 14-09-2016 IPR023165 rRNA adenine dimethylase-like ccrud_RS04500 98151fbd8f50b6af66ccaa88f61de89b 293 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 24 288 46.126 T 14-09-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 ccrud_RS04500 98151fbd8f50b6af66ccaa88f61de89b 293 PANTHER PTHR11727 5 289 2.1E-77 T 14-09-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm ccrud_RS04500 98151fbd8f50b6af66ccaa88f61de89b 293 Gene3D G3DSA:3.40.50.150 12 215 5.3E-66 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS04500 98151fbd8f50b6af66ccaa88f61de89b 293 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 56 83 - T 14-09-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 ccrud_RS01730 000c520279172aaa3c8b19061eb98747 475 SUPERFAMILY SSF64307 403 475 4.84E-19 T 14-09-2016 IPR001455 TusA-like domain ccrud_RS01730 000c520279172aaa3c8b19061eb98747 475 Pfam PF01206 Sulfurtransferase TusA 406 474 8.0E-15 T 14-09-2016 IPR001455 TusA-like domain ccrud_RS01730 000c520279172aaa3c8b19061eb98747 475 PANTHER PTHR30574:SF1 1 360 5.9E-44 T 14-09-2016 ccrud_RS01730 000c520279172aaa3c8b19061eb98747 475 Gene3D G3DSA:3.30.110.40 404 474 4.6E-20 T 14-09-2016 IPR001455 TusA-like domain ccrud_RS01730 000c520279172aaa3c8b19061eb98747 475 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 406 430 - T 14-09-2016 IPR001455 TusA-like domain ccrud_RS01730 000c520279172aaa3c8b19061eb98747 475 PANTHER PTHR30574 1 360 5.9E-44 T 14-09-2016 ccrud_RS01730 000c520279172aaa3c8b19061eb98747 475 Pfam PF04143 Sulphur transport 18 323 2.0E-89 T 14-09-2016 IPR007272 Sulphur transport domain ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 78 620 4.4E-165 T 14-09-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 78 622 1.2E-151 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 Gene3D G3DSA:3.40.1110.10 339 425 2.5E-11 T 14-09-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 Gene3D G3DSA:3.40.50.1000 299 338 4.9E-33 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 Gene3D G3DSA:3.40.50.1000 438 565 4.9E-33 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 Gene3D G3DSA:2.70.150.10 83 231 3.1E-18 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 326 332 - T 14-09-2016 IPR018303 P-type ATPase, phosphorylation site ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 SUPERFAMILY SSF81665 233 318 3.14E-13 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 SUPERFAMILY SSF81665 83 131 3.14E-13 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 182 196 9.4E-21 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 443 454 9.4E-21 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 324 338 9.4E-21 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 519 538 9.4E-21 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 542 554 9.4E-21 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 Pfam PF00702 haloacid dehalogenase-like hydrolase 320 532 1.9E-29 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 SUPERFAMILY SSF81653 142 230 1.02E-18 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 100 345 9.1E-29 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 426 605 1.9E-26 T 14-09-2016 IPR001757 P-type ATPase GO:0016021 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 SUPERFAMILY SSF56784 381 618 9.42E-38 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 SUPERFAMILY SSF56784 323 342 9.42E-38 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 Pfam PF00122 E1-E2 ATPase 98 315 7.9E-49 T 14-09-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 PANTHER PTHR24093 21 623 1.1E-98 T 14-09-2016 ccrud_RS02510 a42ccc1dd77fd0936815ea9f5cfce2a4 638 PANTHER PTHR24093:SF50 21 623 1.1E-98 T 14-09-2016 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 PIRSF PIRSF500134 1 343 7.0E-108 T 14-09-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 Gene3D G3DSA:1.10.1040.10 198 285 8.8E-33 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 SMART SM00984 300 387 2.1E-11 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 192 281 1.4E-25 T 14-09-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 PIRSF PIRSF000124 1 388 5.2E-128 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 Gene3D G3DSA:3.40.50.720 286 388 1.3E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 301 375 1.1E-8 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 377 3.3E-98 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 Gene3D G3DSA:3.40.50.720 1 197 1.2E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 SUPERFAMILY SSF52413 283 388 5.62E-25 T 14-09-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 SUPERFAMILY SSF51735 1 194 1.67E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 PANTHER PTHR11374 1 364 7.1E-196 T 14-09-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 165 6.0E-31 T 14-09-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 PANTHER PTHR11374:SF17 1 364 7.1E-196 T 14-09-2016 ccrud_RS02850 69dac5970e3b2534fa64af453837b0f5 388 SUPERFAMILY SSF48179 191 287 6.46E-29 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS03175 f3d4df3a9db69008db36ac49d335fcc8 192 Gene3D G3DSA:1.10.10.10 54 181 3.0E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03175 f3d4df3a9db69008db36ac49d335fcc8 192 Pfam PF12802 MarR family 74 131 9.1E-9 T 14-09-2016 ccrud_RS03175 f3d4df3a9db69008db36ac49d335fcc8 192 PANTHER PTHR33164 14 191 5.9E-15 T 14-09-2016 ccrud_RS03175 f3d4df3a9db69008db36ac49d335fcc8 192 SUPERFAMILY SSF46785 63 181 8.73E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03175 f3d4df3a9db69008db36ac49d335fcc8 192 SMART SM00347 62 167 1.7E-5 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS05060 97c3f5643180aeec0c1eeab5b23e1977 95 Pfam PF13460 NAD(P)H-binding 7 89 4.9E-11 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05060 97c3f5643180aeec0c1eeab5b23e1977 95 Gene3D G3DSA:3.40.50.720 1 82 2.1E-14 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05060 97c3f5643180aeec0c1eeab5b23e1977 95 SUPERFAMILY SSF51735 1 84 3.78E-15 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01535 d72dc8ace0a43b5032ddf225305faa19 183 PANTHER PTHR41553:SF1 7 173 9.8E-31 T 14-09-2016 ccrud_RS01535 d72dc8ace0a43b5032ddf225305faa19 183 PANTHER PTHR41553 7 173 9.8E-31 T 14-09-2016 ccrud_RS01535 d72dc8ace0a43b5032ddf225305faa19 183 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 38 150 2.7E-31 T 14-09-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III ccrud_RS08300 9e30caa5e191e4b8d7a27baa11076103 847 Pfam PF00271 Helicase conserved C-terminal domain 278 369 2.2E-6 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS08300 9e30caa5e191e4b8d7a27baa11076103 847 SMART SM00487 33 218 6.5E-18 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS08300 9e30caa5e191e4b8d7a27baa11076103 847 Gene3D G3DSA:3.40.50.300 225 387 8.2E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08300 9e30caa5e191e4b8d7a27baa11076103 847 Pfam PF00270 DEAD/DEAH box helicase 39 184 6.6E-10 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS08300 9e30caa5e191e4b8d7a27baa11076103 847 Gene3D G3DSA:3.40.50.300 28 199 3.1E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08300 9e30caa5e191e4b8d7a27baa11076103 847 SMART SM00490 283 369 1.0E-13 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS08300 9e30caa5e191e4b8d7a27baa11076103 847 Pfam PF12029 Domain of unknown function (DUF3516) 380 843 9.6E-197 T 14-09-2016 IPR021904 Protein of unknown function DUF3516 ccrud_RS08300 9e30caa5e191e4b8d7a27baa11076103 847 SUPERFAMILY SSF52540 289 382 3.01E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08300 9e30caa5e191e4b8d7a27baa11076103 847 SUPERFAMILY SSF52540 49 256 3.01E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02685 8edd123b5a82fe6b2d9a1747b168587e 212 SUPERFAMILY SSF109604 15 131 2.11E-15 T 14-09-2016 ccrud_RS02685 8edd123b5a82fe6b2d9a1747b168587e 212 PANTHER PTHR35569:SF1 1 212 5.2E-83 T 14-09-2016 ccrud_RS02685 8edd123b5a82fe6b2d9a1747b168587e 212 PANTHER PTHR35569 1 212 5.2E-83 T 14-09-2016 ccrud_RS02685 8edd123b5a82fe6b2d9a1747b168587e 212 Pfam PF01966 HD domain 32 117 4.7E-7 T 14-09-2016 IPR006674 HD domain ccrud_RS02685 8edd123b5a82fe6b2d9a1747b168587e 212 Gene3D G3DSA:1.10.3210.10 32 128 2.1E-9 T 14-09-2016 IPR006674 HD domain ccrud_RS07310 4f6ded4430a326e4c9c54fb5bd18d54c 87 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 1 87 18.373 T 14-09-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 ccrud_RS07310 4f6ded4430a326e4c9c54fb5bd18d54c 87 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 8 86 1.4E-8 T 14-09-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 ccrud_RS07310 4f6ded4430a326e4c9c54fb5bd18d54c 87 PANTHER PTHR21256 3 87 3.4E-26 T 14-09-2016 ccrud_RS07310 4f6ded4430a326e4c9c54fb5bd18d54c 87 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 5 87 3.5E-24 T 14-09-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 ccrud_RS07310 4f6ded4430a326e4c9c54fb5bd18d54c 87 SUPERFAMILY SSF101386 2 87 9.59E-23 T 14-09-2016 ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 Gene3D G3DSA:1.10.10.10 368 418 3.2E-4 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 PANTHER PTHR13710 21 355 8.5E-108 T 14-09-2016 ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 Gene3D G3DSA:3.40.50.300 21 202 2.2E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 Gene3D G3DSA:3.40.50.300 433 448 4.5E-37 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 Gene3D G3DSA:3.40.50.300 209 364 4.5E-37 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 ProSitePatterns PS00690 DEAH-box subfamily ATP-dependent helicases signature. 144 153 - T 14-09-2016 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site GO:0003676|GO:0005524|GO:0008026 ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 PANTHER PTHR13710 428 476 8.5E-108 T 14-09-2016 ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 Pfam PF00270 DEAD/DEAH box helicase 24 195 8.2E-17 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 PANTHER PTHR13710:SF81 21 355 8.5E-108 T 14-09-2016 ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 PANTHER PTHR13710:SF81 428 476 8.5E-108 T 14-09-2016 ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 Gene3D G3DSA:1.10.10.10 449 492 2.2E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 SMART SM00487 18 219 2.6E-24 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 SMART SM00490 255 336 8.0E-23 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 Pfam PF00271 Helicase conserved C-terminal domain 237 335 1.3E-13 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 21 349 4.7E-70 T 14-09-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 ccrud_RS04415 1ec1aa4a0bd2fff538798045f414da00 683 SUPERFAMILY SSF52540 68 356 1.71E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13320 44e02195cf8ac63d73cdbcbf30ee8655 182 SUPERFAMILY SSF54518 5 176 1.49E-28 T 14-09-2016 IPR025659 Tubby C-terminal-like domain ccrud_RS13320 44e02195cf8ac63d73cdbcbf30ee8655 182 Pfam PF03803 Scramblase 19 175 2.2E-12 T 14-09-2016 IPR005552 Scramblase ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 Pfam PF00149 Calcineurin-like phosphoesterase 36 241 3.5E-6 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 Gene3D G3DSA:3.60.21.10 28 317 1.4E-65 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 Pfam PF02872 5'-nucleotidase, C-terminal domain 344 490 2.2E-32 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 PANTHER PTHR11575 666 676 3.6E-89 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 PANTHER PTHR11575 1 510 3.6E-89 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 Gene3D G3DSA:3.90.780.10 341 521 5.2E-42 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 SUPERFAMILY SSF55816 323 522 6.54E-43 T 14-09-2016 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 SUPERFAMILY SSF56300 29 319 1.03E-60 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 PRINTS PR01607 Apyrase family signature 464 483 8.6E-19 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 PRINTS PR01607 Apyrase family signature 390 413 8.6E-19 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 PRINTS PR01607 Apyrase family signature 224 247 8.6E-19 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 PRINTS PR01607 Apyrase family signature 256 276 8.6E-19 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 PRINTS PR01607 Apyrase family signature 33 51 8.6E-19 T 14-09-2016 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 PANTHER PTHR11575:SF7 666 676 3.6E-89 T 14-09-2016 ccrud_RS01700 b501d78dd206d749c17a2cf644aac9b3 683 PANTHER PTHR11575:SF7 1 510 3.6E-89 T 14-09-2016 ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PANTHER PTHR24321 1 89 9.6E-45 T 14-09-2016 ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PANTHER PTHR24321 117 269 9.6E-45 T 14-09-2016 ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 Pfam PF00106 short chain dehydrogenase 6 221 5.3E-48 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 SUPERFAMILY SSF51735 1 269 1.5E-71 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 165 6.3E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 196 6.3E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 6.3E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PANTHER PTHR24321:SF6 1 89 9.6E-45 T 14-09-2016 ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PANTHER PTHR24321:SF6 117 269 9.6E-45 T 14-09-2016 ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 Gene3D G3DSA:3.40.50.720 1 268 5.5E-77 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 167 7.4E-41 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 196 7.4E-41 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 7.4E-41 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 231 251 7.4E-41 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 198 215 7.4E-41 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS13775 76a455317c4f2403d5bd284ab9643d81 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 7.4E-41 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS07635 e506d60516acaf4e4626b5337307e2d2 235 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 9 234 3.4E-65 T 14-09-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 ccrud_RS07635 e506d60516acaf4e4626b5337307e2d2 235 SUPERFAMILY SSF100950 4 235 2.45E-60 T 14-09-2016 ccrud_RS07635 e506d60516acaf4e4626b5337307e2d2 235 PANTHER PTHR11054 1 235 3.2E-60 T 14-09-2016 ccrud_RS07635 e506d60516acaf4e4626b5337307e2d2 235 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 9 224 9.3E-67 T 14-09-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 ccrud_RS07635 e506d60516acaf4e4626b5337307e2d2 235 Gene3D G3DSA:3.40.50.1360 2 227 8.3E-67 T 14-09-2016 ccrud_RS05260 5dd976a074ba60dce5ca5f3f3724daab 122 Pfam PF09981 Uncharacterized protein conserved in bacteria (DUF2218) 6 107 3.6E-16 T 14-09-2016 IPR014543 Uncharacterised conserved protein UCP028291 ccrud_RS03870 b91765f01e7ebfa66f5733df2ba9237b 352 Gene3D G3DSA:2.40.10.10 248 317 2.3E-12 T 14-09-2016 ccrud_RS03870 b91765f01e7ebfa66f5733df2ba9237b 352 ProSitePatterns PS00134 Serine proteases, trypsin family, histidine active site. 186 191 - T 14-09-2016 IPR018114 Serine proteases, trypsin family, histidine active site GO:0004252|GO:0006508 ccrud_RS03870 b91765f01e7ebfa66f5733df2ba9237b 352 Gene3D G3DSA:2.40.10.10 158 239 8.9E-11 T 14-09-2016 ccrud_RS03870 b91765f01e7ebfa66f5733df2ba9237b 352 SUPERFAMILY SSF50494 162 305 2.4E-25 T 14-09-2016 IPR009003 Peptidase S1, PA clan ccrud_RS09655 d18dae150e549ed1347afcd1c7e35ca5 176 Gene3D G3DSA:3.40.50.300 3 174 1.0E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09655 d18dae150e549ed1347afcd1c7e35ca5 176 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 3 173 6.8E-51 T 14-09-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 ccrud_RS09655 d18dae150e549ed1347afcd1c7e35ca5 176 SUPERFAMILY SSF52540 3 174 2.03E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09655 d18dae150e549ed1347afcd1c7e35ca5 176 PIRSF PIRSF006135 1 176 1.1E-50 T 14-09-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 ccrud_RS09655 d18dae150e549ed1347afcd1c7e35ca5 176 PANTHER PTHR34848 1 176 1.2E-57 T 14-09-2016 ccrud_RS09555 5ba68677dfd5c2b2fdc18de96e73f5bb 462 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 31 462 1.3E-200 T 14-09-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS09555 5ba68677dfd5c2b2fdc18de96e73f5bb 462 PANTHER PTHR21337:SF0 31 462 2.2E-229 T 14-09-2016 ccrud_RS09555 5ba68677dfd5c2b2fdc18de96e73f5bb 462 SUPERFAMILY SSF51569 5 461 4.47E-188 T 14-09-2016 ccrud_RS09555 5ba68677dfd5c2b2fdc18de96e73f5bb 462 Pfam PF01474 Class-II DAHP synthetase family 30 457 1.1E-183 T 14-09-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS09555 5ba68677dfd5c2b2fdc18de96e73f5bb 462 PANTHER PTHR21337 31 462 2.2E-229 T 14-09-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS12330 46258b77d78017126589bf84b2e2038b 566 PANTHER PTHR22773:SF49 7 531 6.9E-150 T 14-09-2016 ccrud_RS12330 46258b77d78017126589bf84b2e2038b 566 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 386 412 1.0E-16 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 ccrud_RS12330 46258b77d78017126589bf84b2e2038b 566 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 334 353 1.0E-16 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 ccrud_RS12330 46258b77d78017126589bf84b2e2038b 566 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 147 166 1.0E-16 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 ccrud_RS12330 46258b77d78017126589bf84b2e2038b 566 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 177 201 1.0E-16 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 ccrud_RS12330 46258b77d78017126589bf84b2e2038b 566 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 248 272 1.0E-16 T 14-09-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 ccrud_RS12330 46258b77d78017126589bf84b2e2038b 566 Pfam PF00361 Proton-conducting membrane transporter 141 428 3.1E-62 T 14-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 ccrud_RS12330 46258b77d78017126589bf84b2e2038b 566 PANTHER PTHR22773 7 531 6.9E-150 T 14-09-2016 ccrud_RS06600 96c444bce88d4f6455345b9f63fff2a7 200 PANTHER PTHR11935 1 199 8.4E-50 T 14-09-2016 ccrud_RS06600 96c444bce88d4f6455345b9f63fff2a7 200 SUPERFAMILY SSF56281 5 194 5.63E-42 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS06600 96c444bce88d4f6455345b9f63fff2a7 200 Pfam PF00753 Metallo-beta-lactamase superfamily 17 154 2.6E-14 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS06600 96c444bce88d4f6455345b9f63fff2a7 200 Gene3D G3DSA:3.60.15.10 6 197 1.0E-43 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS06600 96c444bce88d4f6455345b9f63fff2a7 200 SMART SM00849 16 179 5.4E-22 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS06600 96c444bce88d4f6455345b9f63fff2a7 200 PANTHER PTHR11935:SF89 1 199 8.4E-50 T 14-09-2016 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 Gene3D G3DSA:3.40.190.10 92 174 1.3E-22 T 14-09-2016 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.1E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.1E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.1E-7 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 3.4E-20 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 PANTHER PTHR30346 3 293 8.0E-74 T 14-09-2016 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 Pfam PF03466 LysR substrate binding domain 93 290 3.4E-32 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 PANTHER PTHR30346:SF7 3 293 8.0E-74 T 14-09-2016 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 SUPERFAMILY SSF53850 93 290 8.53E-29 T 14-09-2016 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 SUPERFAMILY SSF46785 4 84 1.79E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 Gene3D G3DSA:3.40.190.10 175 262 1.1E-15 T 14-09-2016 ccrud_RS02380 1ceff409ad6b01fbaea12e8b762352ab 294 Gene3D G3DSA:1.10.10.10 4 85 2.6E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 PANTHER PTHR11573 31 685 8.0E-243 T 14-09-2016 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 TIGRFAM TIGR04170 RNR_1b_NrdE: ribonucleoside-diphosphate reductase, class 1b, alpha subunit 2 701 0.0 T 14-09-2016 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 SUPERFAMILY SSF51998 162 685 4.88E-180 T 14-09-2016 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 480 503 5.3E-31 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 369 380 5.3E-31 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 238 257 5.3E-31 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 564 591 5.3E-31 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 413 436 5.3E-31 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 PRINTS PR01183 Ribonucleotide reductase large chain signature 452 474 5.3E-31 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 SUPERFAMILY SSF48168 2 161 1.01E-58 T 14-09-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 Gene3D G3DSA:3.20.70.20 96 284 4.0E-51 T 14-09-2016 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 Gene3D G3DSA:3.20.70.20 564 678 4.0E-51 T 14-09-2016 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 Gene3D G3DSA:3.20.70.20 337 500 4.0E-51 T 14-09-2016 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 90 683 1.7E-155 T 14-09-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 Pfam PF08343 Ribonucleotide reductase N-terminal 3 84 7.7E-31 T 14-09-2016 IPR013554 Ribonucleotide reductase N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 87 158 1.6E-11 T 14-09-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 553 575 - T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS11360 0e377aebbbf6b985555a66a5a2ef6a60 701 Pfam PF02867 Ribonucleotide reductase, barrel domain 163 680 3.3E-137 T 14-09-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 ccrud_RS11145 30cee76a28771692257e2faee0a48bbd 413 Gene3D G3DSA:3.30.750.24 320 395 1.9E-8 T 14-09-2016 IPR002645 STAS domain ccrud_RS11145 30cee76a28771692257e2faee0a48bbd 413 SUPERFAMILY SSF52091 320 397 1.96E-10 T 14-09-2016 IPR002645 STAS domain ccrud_RS11145 30cee76a28771692257e2faee0a48bbd 413 Pfam PF01740 STAS domain 323 396 8.0E-5 T 14-09-2016 IPR002645 STAS domain ccrud_RS11145 30cee76a28771692257e2faee0a48bbd 413 PANTHER PTHR12544 8 305 3.6E-128 T 14-09-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 ccrud_RS11145 30cee76a28771692257e2faee0a48bbd 413 SUPERFAMILY SSF56601 3 307 1.47E-105 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS11145 30cee76a28771692257e2faee0a48bbd 413 Pfam PF04960 Glutaminase 23 306 2.1E-110 T 14-09-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 ccrud_RS11145 30cee76a28771692257e2faee0a48bbd 413 Hamap MF_00313 Glutaminase [glsA]. 6 307 38.378 T 14-09-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 ccrud_RS11145 30cee76a28771692257e2faee0a48bbd 413 TIGRFAM TIGR03814 Gln_ase: glutaminase A 11 306 2.9E-97 T 14-09-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 ccrud_RS11145 30cee76a28771692257e2faee0a48bbd 413 Gene3D G3DSA:3.40.710.10 4 307 7.5E-122 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS06105 8b13636259ad3a9011ed2f7eb868bc45 521 Pfam PF00924 Mechanosensitive ion channel 72 279 2.5E-27 T 14-09-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 ccrud_RS06105 8b13636259ad3a9011ed2f7eb868bc45 521 Gene3D G3DSA:2.30.30.60 129 173 2.3E-13 T 14-09-2016 ccrud_RS06105 8b13636259ad3a9011ed2f7eb868bc45 521 SUPERFAMILY SSF50182 114 174 3.24E-12 T 14-09-2016 IPR010920 LSM domain ccrud_RS06105 8b13636259ad3a9011ed2f7eb868bc45 521 PANTHER PTHR30460 1 280 8.9E-33 T 14-09-2016 ccrud_RS06480 4cacb7a5f291651f2f01ee58ba99c7e9 71 SUPERFAMILY SSF51230 3 68 3.01E-11 T 14-09-2016 IPR011053 Single hybrid motif ccrud_RS06480 4cacb7a5f291651f2f01ee58ba99c7e9 71 Pfam PF00364 Biotin-requiring enzyme 9 67 2.0E-8 T 14-09-2016 IPR000089 Biotin/lipoyl attachment ccrud_RS06480 4cacb7a5f291651f2f01ee58ba99c7e9 71 Gene3D G3DSA:2.40.50.100 2 68 4.3E-12 T 14-09-2016 ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 SUPERFAMILY SSF53067 175 353 1.1E-33 T 14-09-2016 ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 Pfam PF00012 Hsp70 protein 121 359 8.1E-35 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 SUPERFAMILY SSF53067 2 167 7.3E-23 T 14-09-2016 ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 PRINTS PR00301 70kDa heat shock protein signature 453 469 1.1E-15 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 PRINTS PR00301 70kDa heat shock protein signature 307 323 1.1E-15 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 PRINTS PR00301 70kDa heat shock protein signature 187 197 1.1E-15 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 PRINTS PR00301 70kDa heat shock protein signature 338 358 1.1E-15 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 PRINTS PR00301 70kDa heat shock protein signature 123 143 1.1E-15 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 PRINTS PR00301 70kDa heat shock protein signature 1 10 1.1E-15 T 14-09-2016 IPR013126 Heat shock protein 70 family ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 Gene3D G3DSA:3.30.420.40 188 334 1.6E-18 T 14-09-2016 ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 PANTHER PTHR19375 1 352 2.2E-43 T 14-09-2016 ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 PANTHER PTHR19375:SF144 1 352 2.2E-43 T 14-09-2016 ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 Gene3D G3DSA:3.30.420.40 3 67 6.4E-28 T 14-09-2016 ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 Gene3D G3DSA:3.30.420.40 104 187 6.4E-28 T 14-09-2016 ccrud_RS10580 39251527e4d9589c44f93fb042cba404 484 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 181 194 - T 14-09-2016 IPR018181 Heat shock protein 70, conserved site ccrud_RS08150 2de41a6c2e12fb0b321b979d4f335db5 358 PANTHER PTHR11835 1 357 3.0E-178 T 14-09-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 ccrud_RS08150 2de41a6c2e12fb0b321b979d4f335db5 358 SMART SM01329 7 353 5.5E-164 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 ccrud_RS08150 2de41a6c2e12fb0b321b979d4f335db5 358 SUPERFAMILY SSF53659 5 357 3.26E-110 T 14-09-2016 ccrud_RS08150 2de41a6c2e12fb0b321b979d4f335db5 358 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 5 357 1.0E-155 T 14-09-2016 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 ccrud_RS08150 2de41a6c2e12fb0b321b979d4f335db5 358 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 247 266 - T 14-09-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 ccrud_RS08150 2de41a6c2e12fb0b321b979d4f335db5 358 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 8 355 9.5E-87 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 ccrud_RS08150 2de41a6c2e12fb0b321b979d4f335db5 358 PANTHER PTHR11835:SF37 1 357 3.0E-178 T 14-09-2016 ccrud_RS08150 2de41a6c2e12fb0b321b979d4f335db5 358 Gene3D G3DSA:3.40.718.10 6 357 2.4E-115 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 Gene3D G3DSA:1.10.260.40 360 398 9.2E-10 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 SUPERFAMILY SSF47413 359 397 4.56E-8 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 Pfam PF01548 Transposase 13 157 1.0E-20 T 14-09-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 PANTHER PTHR33055:SF1 9 194 1.1E-35 T 14-09-2016 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 PANTHER PTHR33055:SF1 210 343 1.1E-35 T 14-09-2016 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 PANTHER PTHR33055 9 194 1.1E-35 T 14-09-2016 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 PANTHER PTHR33055 210 343 1.1E-35 T 14-09-2016 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 Pfam PF13560 Helix-turn-helix domain 358 397 5.1E-9 T 14-09-2016 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 SMART SM00530 359 405 1.4E-5 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS06860 213284c9243b37c7b1c8d824a4f6bc98 409 Pfam PF02371 Transposase IS116/IS110/IS902 family 233 315 8.2E-14 T 14-09-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 19 31 2.5E-22 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 376 388 2.5E-22 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 343 349 2.5E-22 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 32 42 2.5E-22 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 93 105 2.5E-22 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 48 60 2.5E-22 T 14-09-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 Pfam PF01266 FAD dependent oxidoreductase 20 392 3.3E-45 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 PANTHER PTHR11985:SF1 16 549 1.7E-119 T 14-09-2016 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 PANTHER PTHR11985 16 549 1.7E-119 T 14-09-2016 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 438 537 2.3E-16 T 14-09-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 SUPERFAMILY SSF51905 361 417 1.75E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 SUPERFAMILY SSF51905 18 260 1.75E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 Gene3D G3DSA:3.50.50.60 17 318 1.3E-40 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07965 87c092c7424bc42719957b56ed576493 562 Gene3D G3DSA:3.50.50.60 362 399 1.3E-40 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08155 58a02ff1863e636fa082e3b66f410f2e 375 PIRSF PIRSF006078 2 362 1.8E-98 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS08155 58a02ff1863e636fa082e3b66f410f2e 375 Pfam PF02595 Glycerate kinase family 4 371 1.7E-104 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS08155 58a02ff1863e636fa082e3b66f410f2e 375 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 4 371 2.6E-92 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS08155 58a02ff1863e636fa082e3b66f410f2e 375 SUPERFAMILY SSF110738 4 372 6.93E-93 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS08155 58a02ff1863e636fa082e3b66f410f2e 375 PANTHER PTHR21599 4 370 1.1E-92 T 14-09-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 ccrud_RS08155 58a02ff1863e636fa082e3b66f410f2e 375 Gene3D G3DSA:3.90.1510.10 41 276 2.8E-68 T 14-09-2016 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 ccrud_RS01905 3f53d83143db85773590dc6dd535e20c 255 Pfam PF14897 EpsG family 2 244 1.8E-34 T 14-09-2016 ccrud_RS10060 8b100d83cf4b09a85d9c2bdea9f1880b 144 SUPERFAMILY SSF46785 13 137 1.31E-34 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10060 8b100d83cf4b09a85d9c2bdea9f1880b 144 PANTHER PTHR33202 15 141 1.5E-47 T 14-09-2016 ccrud_RS10060 8b100d83cf4b09a85d9c2bdea9f1880b 144 Pfam PF01475 Ferric uptake regulator family 14 132 1.9E-34 T 14-09-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 ccrud_RS10060 8b100d83cf4b09a85d9c2bdea9f1880b 144 Gene3D G3DSA:1.10.10.10 14 84 6.5E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10060 8b100d83cf4b09a85d9c2bdea9f1880b 144 PANTHER PTHR33202:SF5 15 141 1.5E-47 T 14-09-2016 ccrud_RS05950 64ce98b2c470dbc5aa785345d226375b 380 Gene3D G3DSA:1.10.10.10 309 362 3.4E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05950 64ce98b2c470dbc5aa785345d226375b 380 Pfam PF13191 AAA ATPase domain 19 173 6.5E-15 T 14-09-2016 ccrud_RS05950 64ce98b2c470dbc5aa785345d226375b 380 SUPERFAMILY SSF52540 5 287 7.73E-22 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05950 64ce98b2c470dbc5aa785345d226375b 380 Gene3D G3DSA:3.40.50.300 5 187 1.9E-7 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07945 78cefbc6ddefb6c738afb896be006f0f 199 SUPERFAMILY SSF48498 80 187 2.45E-20 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS07945 78cefbc6ddefb6c738afb896be006f0f 199 Gene3D G3DSA:1.10.357.10 1 187 2.2E-28 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS07945 78cefbc6ddefb6c738afb896be006f0f 199 PANTHER PTHR30055 1 156 1.9E-14 T 14-09-2016 ccrud_RS07945 78cefbc6ddefb6c738afb896be006f0f 199 SUPERFAMILY SSF46689 1 75 4.73E-18 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS07945 78cefbc6ddefb6c738afb896be006f0f 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 51 4.4E-7 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS07945 78cefbc6ddefb6c738afb896be006f0f 199 PANTHER PTHR30055:SF49 1 156 1.9E-14 T 14-09-2016 ccrud_RS11380 edbb2a59b6854f1becb31a3b98228fef 276 PANTHER PTHR23090 1 276 2.5E-139 T 14-09-2016 ccrud_RS11380 edbb2a59b6854f1becb31a3b98228fef 276 TIGRFAM TIGR00552 nadE: NAD+ synthetase 28 275 8.5E-67 T 14-09-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 ccrud_RS11380 edbb2a59b6854f1becb31a3b98228fef 276 PANTHER PTHR23090:SF7 1 276 2.5E-139 T 14-09-2016 ccrud_RS11380 edbb2a59b6854f1becb31a3b98228fef 276 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 18 270 30.666 T 14-09-2016 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 ccrud_RS11380 edbb2a59b6854f1becb31a3b98228fef 276 SUPERFAMILY SSF52402 5 276 1.62E-76 T 14-09-2016 ccrud_RS11380 edbb2a59b6854f1becb31a3b98228fef 276 Pfam PF02540 NAD synthase 25 267 5.9E-63 T 14-09-2016 IPR022310 NAD/GMP synthase ccrud_RS11380 edbb2a59b6854f1becb31a3b98228fef 276 Gene3D G3DSA:3.40.50.620 5 271 4.0E-64 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS02440 42af359eeec2ef80f3c4d88a13b0283b 407 Gene3D G3DSA:3.40.50.2000 18 139 7.0E-6 T 14-09-2016 ccrud_RS02440 42af359eeec2ef80f3c4d88a13b0283b 407 SUPERFAMILY SSF53756 1 369 8.98E-70 T 14-09-2016 ccrud_RS02440 42af359eeec2ef80f3c4d88a13b0283b 407 PANTHER PTHR12526:SF363 1 404 2.3E-74 T 14-09-2016 ccrud_RS02440 42af359eeec2ef80f3c4d88a13b0283b 407 Pfam PF13439 Glycosyltransferase Family 4 14 183 4.0E-21 T 14-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain ccrud_RS02440 42af359eeec2ef80f3c4d88a13b0283b 407 PANTHER PTHR12526 1 404 2.3E-74 T 14-09-2016 ccrud_RS02440 42af359eeec2ef80f3c4d88a13b0283b 407 Pfam PF00534 Glycosyl transferases group 1 194 336 4.2E-21 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 ccrud_RS02440 42af359eeec2ef80f3c4d88a13b0283b 407 Gene3D G3DSA:3.40.50.2000 176 342 7.0E-20 T 14-09-2016 ccrud_RS10975 36d10159a8f1463a064519d006af8801 376 Pfam PF02417 Chromate transporter 6 166 5.0E-26 T 14-09-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 ccrud_RS10975 36d10159a8f1463a064519d006af8801 376 Pfam PF02417 Chromate transporter 214 371 2.1E-31 T 14-09-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 ccrud_RS10975 36d10159a8f1463a064519d006af8801 376 PANTHER PTHR33567:SF3 3 371 1.9E-92 T 14-09-2016 ccrud_RS10975 36d10159a8f1463a064519d006af8801 376 TIGRFAM TIGR00937 2A51: chromate efflux transporter 14 372 1.9E-78 T 14-09-2016 IPR014047 Chromate transporter, long chain ccrud_RS10975 36d10159a8f1463a064519d006af8801 376 PANTHER PTHR33567 3 371 1.9E-92 T 14-09-2016 ccrud_RS10975 36d10159a8f1463a064519d006af8801 376 PIRSF PIRSF004810 1 376 6.4E-100 T 14-09-2016 IPR014047 Chromate transporter, long chain ccrud_RS05175 3906b68a81595dbdceedc458f0eb0656 200 Gene3D G3DSA:3.60.15.10 1 200 1.6E-21 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS05175 3906b68a81595dbdceedc458f0eb0656 200 SUPERFAMILY SSF56281 7 170 2.3E-19 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS05175 3906b68a81595dbdceedc458f0eb0656 200 PANTHER PTHR15032:SF14 1 173 9.8E-17 T 14-09-2016 ccrud_RS05175 3906b68a81595dbdceedc458f0eb0656 200 SMART SM00849 7 162 5.1E-4 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS05175 3906b68a81595dbdceedc458f0eb0656 200 PANTHER PTHR15032 1 173 9.8E-17 T 14-09-2016 ccrud_RS05175 3906b68a81595dbdceedc458f0eb0656 200 Pfam PF13483 Beta-lactamase superfamily domain 3 139 2.1E-15 T 14-09-2016 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 Gene3D G3DSA:3.20.20.70 445 796 5.8E-96 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 Gene3D G3DSA:2.160.20.60 1237 1500 1.7E-86 T 14-09-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 SUPERFAMILY SSF51395 447 1211 3.34E-257 T 14-09-2016 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 SUPERFAMILY SSF56235 16 433 9.26E-147 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 Pfam PF01493 GXGXG motif 1264 1450 1.5E-74 T 14-09-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 Pfam PF00310 Glutamine amidotransferases class-II 16 430 4.6E-182 T 14-09-2016 IPR017932 Glutamine amidotransferase type 2 domain ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 PANTHER PTHR11938:SF1 5 1493 0.0 T 14-09-2016 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 Gene3D G3DSA:3.60.20.10 16 441 3.3E-180 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 Pfam PF04898 Glutamate synthase central domain 457 744 5.4E-105 T 14-09-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 Gene3D G3DSA:3.20.20.70 830 1218 5.1E-177 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 Pfam PF01645 Conserved region in glutamate synthase 808 1176 1.3E-154 T 14-09-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 PANTHER PTHR11938 5 1493 0.0 T 14-09-2016 ccrud_RS00975 5a9fc1988e2740ff145be763c40e1eaa 1510 SUPERFAMILY SSF69336 1228 1490 1.15E-75 T 14-09-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 ccrud_RS10120 0dc7e3c04878468f5c1454478ab34fe3 380 SMART SM00729 3 228 5.5E-60 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 ccrud_RS10120 0dc7e3c04878468f5c1454478ab34fe3 380 PANTHER PTHR13932 4 380 7.7E-136 T 14-09-2016 ccrud_RS10120 0dc7e3c04878468f5c1454478ab34fe3 380 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 6 333 3.1E-82 T 14-09-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- ccrud_RS10120 0dc7e3c04878468f5c1454478ab34fe3 380 Pfam PF04055 Radical SAM superfamily 8 183 5.9E-20 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 ccrud_RS10120 0dc7e3c04878468f5c1454478ab34fe3 380 Gene3D G3DSA:3.80.30.20 6 243 6.1E-37 T 14-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe ccrud_RS10120 0dc7e3c04878468f5c1454478ab34fe3 380 PANTHER PTHR13932:SF5 4 380 7.7E-136 T 14-09-2016 ccrud_RS10120 0dc7e3c04878468f5c1454478ab34fe3 380 SUPERFAMILY SSF102114 5 375 9.94E-110 T 14-09-2016 ccrud_RS10120 0dc7e3c04878468f5c1454478ab34fe3 380 Pfam PF06969 HemN C-terminal domain 307 365 3.0E-7 T 14-09-2016 IPR010723 HemN, C-terminal ccrud_RS00390 eb85eeea58d8f9053374041c1b81c6a5 175 SUPERFAMILY SSF53335 4 150 1.71E-16 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS00390 eb85eeea58d8f9053374041c1b81c6a5 175 Gene3D G3DSA:3.40.50.150 11 130 5.5E-11 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS00390 eb85eeea58d8f9053374041c1b81c6a5 175 Pfam PF13489 Methyltransferase domain 14 104 5.2E-13 T 14-09-2016 ccrud_RS08375 1d46bf3e30a6f6c8d8d9dd6f48dd7118 429 PANTHER PTHR11119 17 416 8.9E-137 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS08375 1d46bf3e30a6f6c8d8d9dd6f48dd7118 429 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 34 410 2.5E-88 T 14-09-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 ccrud_RS08375 1d46bf3e30a6f6c8d8d9dd6f48dd7118 429 Pfam PF00860 Permease family 35 390 1.5E-78 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS08375 1d46bf3e30a6f6c8d8d9dd6f48dd7118 429 PANTHER PTHR11119:SF49 17 416 8.9E-137 T 14-09-2016 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 PANTHER PTHR13847 6 358 3.2E-59 T 14-09-2016 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 Gene3D G3DSA:3.50.50.60 2 20 9.7E-7 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 Gene3D G3DSA:3.50.50.60 78 133 9.7E-7 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 Gene3D G3DSA:3.30.9.10 166 316 1.5E-28 T 14-09-2016 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 PANTHER PTHR13847:SF180 6 358 3.2E-59 T 14-09-2016 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 6 356 5.7E-95 T 14-09-2016 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 UniPathway: UPA00060 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 SUPERFAMILY SSF51905 317 372 3.75E-33 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 SUPERFAMILY SSF51905 3 223 3.75E-33 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 Pfam PF01266 FAD dependent oxidoreductase 4 354 2.9E-49 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 Gene3D G3DSA:3.50.50.60 21 73 2.2E-6 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08880 126a78c5506734545155bc99148c788b 374 SUPERFAMILY SSF54373 225 316 4.05E-15 T 14-09-2016 ccrud_RS11485 d0c8cf20d58cbfee52f46569534190b6 483 Pfam PF13347 MFS/sugar transport protein 27 463 8.7E-82 T 14-09-2016 ccrud_RS11485 d0c8cf20d58cbfee52f46569534190b6 483 PANTHER PTHR11328:SF24 22 480 1.1E-82 T 14-09-2016 ccrud_RS11485 d0c8cf20d58cbfee52f46569534190b6 483 SUPERFAMILY SSF103473 25 469 5.58E-29 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS11485 d0c8cf20d58cbfee52f46569534190b6 483 Gene3D G3DSA:1.20.1250.20 255 469 5.2E-9 T 14-09-2016 ccrud_RS11485 d0c8cf20d58cbfee52f46569534190b6 483 Gene3D G3DSA:1.20.1250.20 28 237 8.6E-10 T 14-09-2016 ccrud_RS11485 d0c8cf20d58cbfee52f46569534190b6 483 PANTHER PTHR11328 22 480 1.1E-82 T 14-09-2016 ccrud_RS11485 d0c8cf20d58cbfee52f46569534190b6 483 TIGRFAM TIGR00792 gph: sugar (Glycoside-Pentoside-Hexuronide) transporter 25 475 1.2E-88 T 14-09-2016 IPR001927 Sodium:galactoside symporter GO:0005215|GO:0006814|GO:0016020 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 Gene3D G3DSA:3.40.50.10370 395 489 3.3E-36 T 14-09-2016 IPR029503 Phosphotransferase system EIIB component, mannitol-specific GO:0009401|GO:0022872 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 PANTHER PTHR30181:SF2 10 505 2.0E-260 T 14-09-2016 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 PANTHER PTHR30181:SF2 523 644 2.0E-260 T 14-09-2016 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 SUPERFAMILY SSF55804 531 668 9.68E-36 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 Pfam PF02378 Phosphotransferase system, EIIC 27 296 6.4E-16 T 14-09-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 PANTHER PTHR30181 10 505 2.0E-260 T 14-09-2016 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 PANTHER PTHR30181 523 644 2.0E-260 T 14-09-2016 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 SUPERFAMILY SSF52794 396 487 5.18E-21 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 Gene3D G3DSA:3.40.930.10 531 668 7.4E-38 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 TIGRFAM TIGR00851 mtlA: PTS system, mannitol-specific IIC component 18 366 4.8E-144 T 14-09-2016 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC GO:0008982|GO:0009401|GO:0016021 ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 576 592 - T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 532 667 2.3E-29 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS10020 9dde8f6b47365ee43dcf849cd7fc05f7 672 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 398 483 8.3E-9 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 ccrud_RS11640 652f84f162ee5e3efde3c0fa64a6f4a9 373 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 220 290 6.8E-16 T 14-09-2016 IPR017703 YgfZ/GcvT conserved site ccrud_RS11640 652f84f162ee5e3efde3c0fa64a6f4a9 373 Pfam PF01571 Aminomethyltransferase folate-binding domain 50 172 3.7E-12 T 14-09-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal ccrud_RS11640 652f84f162ee5e3efde3c0fa64a6f4a9 373 Gene3D G3DSA:3.30.70.1400 76 161 9.3E-12 T 14-09-2016 ccrud_RS11640 652f84f162ee5e3efde3c0fa64a6f4a9 373 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 264 352 4.3E-5 T 14-09-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 ccrud_RS11640 652f84f162ee5e3efde3c0fa64a6f4a9 373 SUPERFAMILY SSF103025 50 279 6.59E-50 T 14-09-2016 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 PANTHER PTHR15184 441 732 2.8E-163 T 14-09-2016 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 PANTHER PTHR15184:SF34 441 732 2.8E-163 T 14-09-2016 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 Pfam PF07497 Rho termination factor, RNA-binding domain 376 456 1.5E-25 T 14-09-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 Gene3D G3DSA:3.40.50.300 464 746 1.6E-96 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 SUPERFAMILY SSF68912 11 50 7.45E-5 T 14-09-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 SMART SM00382 500 685 5.0E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 PANTHER PTHR15184 228 357 2.8E-163 T 14-09-2016 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 Pfam PF07498 Rho termination factor, N-terminal domain 13 50 1.8E-9 T 14-09-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 PANTHER PTHR15184:SF34 228 357 2.8E-163 T 14-09-2016 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 SMART SM00959 13 53 5.9E-10 T 14-09-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 TIGRFAM TIGR00767 rho: transcription termination factor Rho 11 746 2.0E-190 T 14-09-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 SUPERFAMILY SSF52540 450 700 3.25E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 Gene3D G3DSA:2.40.50.140 12 53 3.1E-33 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 Gene3D G3DSA:2.40.50.140 371 456 3.1E-33 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 SUPERFAMILY SSF50249 377 456 2.48E-13 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 Hamap MF_01884 Transcription termination factor Rho [rho]. 370 749 188.157 T 14-09-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 ccrud_RS05790 2584df4114d1fcd0c10e577dd1921545 762 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 489 693 1.5E-24 T 14-09-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 ccrud_RS07565 a495b4c1341fbc3b5389e91a8ecc573e 252 TIGRFAM TIGR01978 sufC: FeS assembly ATPase SufC 4 249 7.2E-102 T 14-09-2016 IPR010230 FeS cluster assembly SUF system, ATPase SufC GO:0005524|GO:0006810 ccrud_RS07565 a495b4c1341fbc3b5389e91a8ecc573e 252 PANTHER PTHR24220:SF85 5 248 1.6E-121 T 14-09-2016 ccrud_RS07565 a495b4c1341fbc3b5389e91a8ecc573e 252 Pfam PF00005 ABC transporter 26 177 2.8E-19 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS07565 a495b4c1341fbc3b5389e91a8ecc573e 252 SUPERFAMILY SSF52540 22 236 1.87E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07565 a495b4c1341fbc3b5389e91a8ecc573e 252 Gene3D G3DSA:3.40.50.300 3 237 8.2E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07565 a495b4c1341fbc3b5389e91a8ecc573e 252 PANTHER PTHR24220 5 248 1.6E-121 T 14-09-2016 ccrud_RS07350 d623564d2b8e2de342e04619dade57f8 99 SUPERFAMILY SSF47413 10 94 1.36E-22 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS07350 d623564d2b8e2de342e04619dade57f8 99 Gene3D G3DSA:1.10.260.40 5 95 3.9E-29 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS07350 d623564d2b8e2de342e04619dade57f8 99 PANTHER PTHR36924:SF1 1 94 7.4E-29 T 14-09-2016 ccrud_RS07350 d623564d2b8e2de342e04619dade57f8 99 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 7 84 1.5E-24 T 14-09-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 ccrud_RS07350 d623564d2b8e2de342e04619dade57f8 99 PANTHER PTHR36924 1 94 7.4E-29 T 14-09-2016 ccrud_RS05580 c4dc6bb292150864fe9fffb0ce3292ad 295 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 134 162 - T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 ccrud_RS05580 c4dc6bb292150864fe9fffb0ce3292ad 295 PANTHER PTHR33711:SF4 1 295 4.9E-98 T 14-09-2016 ccrud_RS05580 c4dc6bb292150864fe9fffb0ce3292ad 295 PANTHER PTHR33711 1 295 4.9E-98 T 14-09-2016 ccrud_RS05580 c4dc6bb292150864fe9fffb0ce3292ad 295 Pfam PF04444 Catechol dioxygenase N terminus 27 101 9.8E-30 T 14-09-2016 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 ccrud_RS05580 c4dc6bb292150864fe9fffb0ce3292ad 295 Gene3D G3DSA:2.60.130.10 7 294 8.7E-89 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS05580 c4dc6bb292150864fe9fffb0ce3292ad 295 Pfam PF00775 Dioxygenase 105 290 6.6E-42 T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 ccrud_RS05580 c4dc6bb292150864fe9fffb0ce3292ad 295 SUPERFAMILY SSF49482 7 293 2.35E-84 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS02870 e10d8ea6e996712ab0e015a85fa2bf1a 592 Pfam PF13506 Glycosyl transferase family 21 177 344 2.5E-23 T 14-09-2016 IPR025993 Ceramide glucosyltransferase GO:0016757 KEGG: 00600+2.4.1.80|MetaCyc: PWY-5129|UniPathway: UPA00222 ccrud_RS02870 e10d8ea6e996712ab0e015a85fa2bf1a 592 Gene3D G3DSA:3.90.550.10 128 316 7.6E-7 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS02870 e10d8ea6e996712ab0e015a85fa2bf1a 592 SUPERFAMILY SSF53448 123 371 4.28E-29 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS02870 e10d8ea6e996712ab0e015a85fa2bf1a 592 PANTHER PTHR10587 13 239 4.1E-18 T 14-09-2016 ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 SUPERFAMILY SSF46894 212 279 5.44E-18 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 Gene3D G3DSA:3.30.450.40 7 123 4.5E-12 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 Gene3D G3DSA:3.30.450.40 190 206 4.5E-12 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 Gene3D G3DSA:1.10.10.10 215 278 7.2E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 SMART SM00421 217 274 5.8E-19 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 250 262 1.8E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 234 250 1.8E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 220 234 1.8E-9 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 Pfam PF00196 Bacterial regulatory proteins, luxR family 219 273 1.2E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 SUPERFAMILY SSF55781 10 144 3.36E-13 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 Pfam PF13185 GAF domain 10 143 1.5E-7 T 14-09-2016 IPR003018 GAF domain GO:0005515 ccrud_RS11515 8f3d277024e4f2963edbf95f40e499a4 281 SMART SM00065 8 156 0.0035 T 14-09-2016 IPR003018 GAF domain GO:0005515 ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 PANTHER PTHR10357 9 436 2.4E-132 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 SUPERFAMILY SSF51445 8 488 3.78E-114 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 PANTHER PTHR10357:SF11 470 528 2.4E-132 T 14-09-2016 ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 PANTHER PTHR10357:SF11 9 436 2.4E-132 T 14-09-2016 ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 SMART SM00642 18 431 4.3E-105 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 Pfam PF00128 Alpha amylase, catalytic domain 33 403 2.3E-76 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 Gene3D G3DSA:3.90.400.10 110 187 5.0E-24 T 14-09-2016 ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 Gene3D G3DSA:3.20.20.80 8 109 1.2E-100 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 Gene3D G3DSA:3.20.20.80 188 487 1.2E-100 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS10835 d0d3f1fd5f8d3e17f7ab10e96198d545 561 PANTHER PTHR10357 470 528 2.4E-132 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 7.0E-18 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 SUPERFAMILY SSF110324 2 81 3.38E-32 T 14-09-2016 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 PANTHER PTHR15893 1 81 2.7E-44 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 83 27.493 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 14-09-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 81 3.7E-37 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 Pfam PF01016 Ribosomal L27 protein 2 80 1.4E-37 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 PRINTS PR00063 Ribosomal protein L27 signature 54 78 8.8E-37 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 PRINTS PR00063 Ribosomal protein L27 signature 29 53 8.8E-37 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 PRINTS PR00063 Ribosomal protein L27 signature 4 28 8.8E-37 T 14-09-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10510 017703a0754b6c68ea7a40cb16f27506 88 Gene3D G3DSA:2.40.50.100 20 82 1.3E-30 T 14-09-2016 ccrud_RS01060 32d842efbf3039df938ff76d2728756c 199 Pfam PF13468 Glyoxalase-like domain 5 162 2.4E-32 T 14-09-2016 IPR025870 Glyoxalase-like domain ccrud_RS01060 32d842efbf3039df938ff76d2728756c 199 Gene3D G3DSA:3.10.180.10 2 110 2.1E-6 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS01060 32d842efbf3039df938ff76d2728756c 199 SUPERFAMILY SSF54593 2 106 6.3E-7 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS10860 ea44857578d035515f2411fdb3d1d4fc 338 Gene3D G3DSA:3.10.450.50 192 328 4.0E-13 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS10860 ea44857578d035515f2411fdb3d1d4fc 338 SUPERFAMILY SSF54427 20 150 3.62E-15 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS10860 ea44857578d035515f2411fdb3d1d4fc 338 Pfam PF07366 SnoaL-like polyketide cyclase 193 323 1.2E-11 T 14-09-2016 IPR009959 Polyketide cyclase SnoaL-like domain ccrud_RS10860 ea44857578d035515f2411fdb3d1d4fc 338 SUPERFAMILY SSF54427 192 323 1.34E-18 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 SMART SM00862 154 230 1.8E-29 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 Pfam PF00072 Response regulator receiver domain 4 113 7.3E-26 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 Gene3D G3DSA:3.40.50.2300 1 125 4.7E-38 T 14-09-2016 ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 SUPERFAMILY SSF52172 1 124 4.98E-40 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 PANTHER PTHR26402 2 231 1.5E-149 T 14-09-2016 ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 Gene3D G3DSA:1.10.10.10 133 231 9.7E-37 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 PANTHER PTHR26402:SF459 2 231 1.5E-149 T 14-09-2016 ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 230 9.5E-28 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 SUPERFAMILY SSF46894 131 231 4.25E-32 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS02125 9cdaed79f5d4b276129a39d7ac363db1 232 SMART SM00448 2 112 1.0E-42 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS00205 5b826b2390d7aff650d296091ba8fb09 104 SUPERFAMILY SSF54909 1 95 3.17E-23 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS00205 5b826b2390d7aff650d296091ba8fb09 104 SMART SM00886 2 96 1.2E-23 T 14-09-2016 IPR013097 Stress responsive alpha-beta barrel ccrud_RS00205 5b826b2390d7aff650d296091ba8fb09 104 PANTHER PTHR33178 2 97 7.3E-14 T 14-09-2016 ccrud_RS00205 5b826b2390d7aff650d296091ba8fb09 104 Gene3D G3DSA:3.30.70.900 1 95 1.7E-25 T 14-09-2016 ccrud_RS00205 5b826b2390d7aff650d296091ba8fb09 104 Pfam PF07876 Stress responsive A/B Barrel Domain 2 95 6.0E-19 T 14-09-2016 IPR013097 Stress responsive alpha-beta barrel ccrud_RS10965 622a2d3b694e1ee472bd528fc4759328 260 PANTHER PTHR24220 7 243 3.8E-78 T 14-09-2016 ccrud_RS10965 622a2d3b694e1ee472bd528fc4759328 260 Gene3D G3DSA:3.40.50.300 2 236 2.3E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10965 622a2d3b694e1ee472bd528fc4759328 260 SUPERFAMILY SSF52540 3 235 9.19E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10965 622a2d3b694e1ee472bd528fc4759328 260 SMART SM00382 30 221 1.5E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS10965 622a2d3b694e1ee472bd528fc4759328 260 PANTHER PTHR24220:SF383 7 243 3.8E-78 T 14-09-2016 ccrud_RS10965 622a2d3b694e1ee472bd528fc4759328 260 Pfam PF00005 ABC transporter 21 170 3.7E-26 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 PANTHER PTHR11902 4 418 4.3E-263 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 Hamap MF_00318 Enolase [eno]. 2 408 45.042 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 ProSitePatterns PS00164 Enolase signature. 331 344 - T 14-09-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 Pfam PF00113 Enolase, C-terminal TIM barrel domain 139 419 3.9E-133 T 14-09-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 SUPERFAMILY SSF51604 137 422 1.03E-129 T 14-09-2016 IPR029065 Enolase C-terminal domain-like ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 Gene3D G3DSA:3.30.390.10 4 124 4.9E-54 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 SUPERFAMILY SSF54826 3 139 1.45E-54 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 SMART SM01192 138 422 4.7E-223 T 14-09-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 PIRSF PIRSF001400 1 421 5.3E-191 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 PRINTS PR00148 Enolase signature 106 122 5.5E-48 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 PRINTS PR00148 Enolase signature 37 51 5.5E-48 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 PRINTS PR00148 Enolase signature 331 345 5.5E-48 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 PRINTS PR00148 Enolase signature 160 173 5.5E-48 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 PRINTS PR00148 Enolase signature 360 377 5.5E-48 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 PRINTS PR00148 Enolase signature 308 319 5.5E-48 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 422 5.6E-205 T 14-09-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 Gene3D G3DSA:3.20.20.120 127 421 9.0E-136 T 14-09-2016 IPR029065 Enolase C-terminal domain-like ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 SMART SM01193 4 133 8.3E-92 T 14-09-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 ccrud_RS04810 c10a425067d069ce6cf6515c7f13656e 425 Pfam PF03952 Enolase, N-terminal domain 4 133 4.2E-57 T 14-09-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 ccrud_RS13940 438073937121a3b9a3c4435e36d55634 209 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 7 204 23.016 T 14-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 ccrud_RS13940 438073937121a3b9a3c4435e36d55634 209 Gene3D G3DSA:3.40.50.150 15 208 5.4E-59 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS13940 438073937121a3b9a3c4435e36d55634 209 SUPERFAMILY SSF53335 14 206 1.54E-32 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS13940 438073937121a3b9a3c4435e36d55634 209 PANTHER PTHR31760:SF0 8 209 8.3E-56 T 14-09-2016 ccrud_RS13940 438073937121a3b9a3c4435e36d55634 209 PIRSF PIRSF003078 2 209 4.0E-46 T 14-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 ccrud_RS13940 438073937121a3b9a3c4435e36d55634 209 PANTHER PTHR31760 8 209 8.3E-56 T 14-09-2016 ccrud_RS13940 438073937121a3b9a3c4435e36d55634 209 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 20 192 1.1E-40 T 14-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 ccrud_RS13940 438073937121a3b9a3c4435e36d55634 209 Pfam PF02527 rRNA small subunit methyltransferase G 15 191 1.7E-50 T 14-09-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 ccrud_RS09615 f69a7270698caa82b71ace964b9cdfa8 407 Gene3D G3DSA:2.102.10.10 163 191 2.1E-45 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS09615 f69a7270698caa82b71ace964b9cdfa8 407 Gene3D G3DSA:2.102.10.10 272 405 2.1E-45 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS09615 f69a7270698caa82b71ace964b9cdfa8 407 SUPERFAMILY SSF50022 323 405 5.5E-28 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS09615 f69a7270698caa82b71ace964b9cdfa8 407 Pfam PF00355 Rieske [2Fe-2S] domain 279 379 8.1E-12 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS09615 f69a7270698caa82b71ace964b9cdfa8 407 PANTHER PTHR10134 323 391 8.2E-19 T 14-09-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 SUPERFAMILY SSF50129 25 155 1.29E-31 T 14-09-2016 IPR011032 GroES-like ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 Gene3D G3DSA:3.90.180.10 23 164 4.8E-34 T 14-09-2016 IPR011032 GroES-like ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 42 100 3.0E-7 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 PANTHER PTHR11695:SF558 29 337 1.2E-95 T 14-09-2016 ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 PANTHER PTHR11695 29 337 1.2E-95 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 14 335 2.1E-120 T 14-09-2016 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 SUPERFAMILY SSF51735 128 282 1.42E-28 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 SMART SM00829 22 335 8.1E-11 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 Pfam PF13602 Zinc-binding dehydrogenase 201 335 5.6E-15 T 14-09-2016 ccrud_RS13580 2372dc443574ca306d87ee2bc491a985 337 Gene3D G3DSA:3.40.50.720 165 241 6.1E-10 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 PIRSF PIRSF000106 4 392 4.2E-70 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 SUPERFAMILY SSF51735 168 391 5.85E-63 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 PRINTS PR00072 Malic enzyme signature 85 107 8.4E-6 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 PRINTS PR00072 Malic enzyme signature 164 180 8.4E-6 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 PRINTS PR00072 Malic enzyme signature 195 211 8.4E-6 T 14-09-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 Gene3D G3DSA:3.40.50.10380 14 165 4.4E-52 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 Gene3D G3DSA:3.40.50.720 166 385 3.0E-67 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 PANTHER PTHR23406:SF33 39 391 8.9E-150 T 14-09-2016 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 Pfam PF00390 Malic enzyme, N-terminal domain 25 155 2.4E-28 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 SMART SM00919 168 388 1.7E-95 T 14-09-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 SUPERFAMILY SSF53223 18 166 2.45E-51 T 14-09-2016 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 PANTHER PTHR23406 39 391 8.9E-150 T 14-09-2016 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 SMART SM01274 23 156 9.1E-75 T 14-09-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 ccrud_RS13590 7eef743049a9c5a1e9d2513339450827 392 Pfam PF03949 Malic enzyme, NAD binding domain 170 370 1.5E-23 T 14-09-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 ccrud_RS05165 4c0cfe36a294b34cd1cc4eb7255776b2 214 Gene3D G3DSA:1.10.10.10 143 214 2.3E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05165 4c0cfe36a294b34cd1cc4eb7255776b2 214 PANTHER PTHR22769:SF42 33 203 2.7E-33 T 14-09-2016 ccrud_RS05165 4c0cfe36a294b34cd1cc4eb7255776b2 214 PANTHER PTHR22769 33 203 2.7E-33 T 14-09-2016 ccrud_RS05165 4c0cfe36a294b34cd1cc4eb7255776b2 214 Pfam PF00293 NUDIX domain 38 129 2.8E-10 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS05165 4c0cfe36a294b34cd1cc4eb7255776b2 214 Gene3D G3DSA:3.90.79.10 3 140 1.0E-35 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS05165 4c0cfe36a294b34cd1cc4eb7255776b2 214 SUPERFAMILY SSF55811 33 147 4.47E-31 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS05165 4c0cfe36a294b34cd1cc4eb7255776b2 214 SUPERFAMILY SSF46785 151 213 6.71E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12225 ab0082293fbda9770e3acf255fb76daa 148 SMART SM00347 32 132 9.0E-13 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS12225 ab0082293fbda9770e3acf255fb76daa 148 Gene3D G3DSA:1.10.10.10 10 143 8.1E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12225 ab0082293fbda9770e3acf255fb76daa 148 PANTHER PTHR33164 17 148 4.4E-16 T 14-09-2016 ccrud_RS12225 ab0082293fbda9770e3acf255fb76daa 148 Pfam PF01047 MarR family 40 95 1.4E-9 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS12225 ab0082293fbda9770e3acf255fb76daa 148 SUPERFAMILY SSF46785 10 145 5.18E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12225 ab0082293fbda9770e3acf255fb76daa 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 92 108 1.7E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS12225 ab0082293fbda9770e3acf255fb76daa 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 56 72 1.7E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS12225 ab0082293fbda9770e3acf255fb76daa 148 PRINTS PR00598 Bacterial regulatory protein MarR family signature 73 88 1.7E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS13330 22116911b15d05db6d527e7edcf5f2a3 217 SUPERFAMILY SSF55068 22 212 8.76E-66 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 ccrud_RS13330 22116911b15d05db6d527e7edcf5f2a3 217 Gene3D G3DSA:3.30.1060.10 21 204 8.6E-68 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 ccrud_RS13330 22116911b15d05db6d527e7edcf5f2a3 217 PANTHER PTHR10173 11 204 3.7E-71 T 14-09-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 ccrud_RS13330 22116911b15d05db6d527e7edcf5f2a3 217 PANTHER PTHR10173:SF36 11 204 3.7E-71 T 14-09-2016 ccrud_RS13330 22116911b15d05db6d527e7edcf5f2a3 217 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 49 204 8.8E-57 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 ccrud_RS13330 22116911b15d05db6d527e7edcf5f2a3 217 Pfam PF01625 Peptide methionine sulfoxide reductase 50 204 2.3E-59 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 ccrud_RS13330 22116911b15d05db6d527e7edcf5f2a3 217 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 47 210 35.74 T 14-09-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 ccrud_RS04825 33b566ffd407728389e6ef4a3847a15e 318 Gene3D G3DSA:3.30.420.150 130 315 8.8E-53 T 14-09-2016 ccrud_RS04825 33b566ffd407728389e6ef4a3847a15e 318 Gene3D G3DSA:3.30.420.40 1 126 4.5E-45 T 14-09-2016 ccrud_RS04825 33b566ffd407728389e6ef4a3847a15e 318 SUPERFAMILY SSF53067 3 126 4.21E-34 T 14-09-2016 ccrud_RS04825 33b566ffd407728389e6ef4a3847a15e 318 Pfam PF02541 Ppx/GppA phosphatase family 18 311 2.5E-60 T 14-09-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 ccrud_RS04825 33b566ffd407728389e6ef4a3847a15e 318 PANTHER PTHR30005 1 315 6.5E-91 T 14-09-2016 ccrud_RS04825 33b566ffd407728389e6ef4a3847a15e 318 SUPERFAMILY SSF53067 133 314 9.07E-35 T 14-09-2016 ccrud_RS04825 33b566ffd407728389e6ef4a3847a15e 318 PANTHER PTHR30005:SF1 1 315 6.5E-91 T 14-09-2016 ccrud_RS01470 cdb73e30c7c70abfdff1aece9e650147 156 Pfam PF01047 MarR family 54 108 2.8E-9 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS01470 cdb73e30c7c70abfdff1aece9e650147 156 PANTHER PTHR33164:SF16 25 155 2.6E-18 T 14-09-2016 ccrud_RS01470 cdb73e30c7c70abfdff1aece9e650147 156 SMART SM00347 44 144 8.7E-20 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS01470 cdb73e30c7c70abfdff1aece9e650147 156 SUPERFAMILY SSF46785 21 154 3.05E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS01470 cdb73e30c7c70abfdff1aece9e650147 156 PANTHER PTHR33164 25 155 2.6E-18 T 14-09-2016 ccrud_RS01470 cdb73e30c7c70abfdff1aece9e650147 156 Gene3D G3DSA:1.10.10.10 22 154 1.1E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS01470 cdb73e30c7c70abfdff1aece9e650147 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 100 2.6E-10 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS01470 cdb73e30c7c70abfdff1aece9e650147 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 134 154 2.6E-10 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS01470 cdb73e30c7c70abfdff1aece9e650147 156 PRINTS PR00598 Bacterial regulatory protein MarR family signature 104 120 2.6E-10 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 PANTHER PTHR21631:SF7 53 63 1.3E-136 T 14-09-2016 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 26 743 0.0 T 14-09-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 Gene3D G3DSA:1.20.1220.12 611 743 2.5E-71 T 14-09-2016 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 Gene3D G3DSA:3.20.20.360 111 157 2.5E-134 T 14-09-2016 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 Gene3D G3DSA:3.20.20.360 357 609 2.5E-134 T 14-09-2016 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 Gene3D G3DSA:3.20.20.360 287 317 2.5E-134 T 14-09-2016 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 Pfam PF01274 Malate synthase 39 718 1.1E-200 T 14-09-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 Gene3D G3DSA:1.10.1860.10 25 110 4.8E-34 T 14-09-2016 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 Gene3D G3DSA:2.170.170.11 158 285 2.7E-59 T 14-09-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 Gene3D G3DSA:2.170.170.11 319 356 2.7E-59 T 14-09-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 PANTHER PTHR21631:SF7 521 744 1.3E-136 T 14-09-2016 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 SUPERFAMILY SSF51645 26 743 1.31E-284 T 14-09-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 Hamap MF_00641 Malate synthase G [glcB]. 1 744 366.336 T 14-09-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 PANTHER PTHR21631 521 744 1.3E-136 T 14-09-2016 ccrud_RS10340 84f180f7a83c5fbd428579f2315d0876 744 PANTHER PTHR21631 53 63 1.3E-136 T 14-09-2016 ccrud_RS06190 be64c50d2c57c1baf54de8588bc6a622 69 PANTHER PTHR37301 2 67 7.5E-33 T 14-09-2016 ccrud_RS06190 be64c50d2c57c1baf54de8588bc6a622 69 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 7 67 1.2E-18 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS06190 be64c50d2c57c1baf54de8588bc6a622 69 Gene3D G3DSA:1.10.260.40 1 66 8.4E-14 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS06190 be64c50d2c57c1baf54de8588bc6a622 69 SMART SM00530 6 62 2.1E-5 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS06190 be64c50d2c57c1baf54de8588bc6a622 69 SUPERFAMILY SSF47413 1 66 3.56E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS08875 4fc5a6bf39201a97f90e287526c0620a 221 Pfam PF02581 Thiamine monophosphate synthase/TENI 10 197 1.5E-46 T 14-09-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS08875 4fc5a6bf39201a97f90e287526c0620a 221 PANTHER PTHR20857:SF15 1 210 6.9E-36 T 14-09-2016 ccrud_RS08875 4fc5a6bf39201a97f90e287526c0620a 221 PANTHER PTHR20857 1 210 6.9E-36 T 14-09-2016 ccrud_RS08875 4fc5a6bf39201a97f90e287526c0620a 221 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 8 216 21.621 T 14-09-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS08875 4fc5a6bf39201a97f90e287526c0620a 221 SUPERFAMILY SSF51391 6 212 4.71E-43 T 14-09-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS08875 4fc5a6bf39201a97f90e287526c0620a 221 Gene3D G3DSA:3.20.20.70 3 216 2.5E-51 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS08435 3922fff33ea0aa05b68f8159cfd2a20d 295 SUPERFAMILY SSF53850 14 276 2.84E-49 T 14-09-2016 ccrud_RS08435 3922fff33ea0aa05b68f8159cfd2a20d 295 PANTHER PTHR18966 57 274 3.4E-20 T 14-09-2016 ccrud_RS08435 3922fff33ea0aa05b68f8159cfd2a20d 295 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 45 274 1.1E-43 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ccrud_RS08435 3922fff33ea0aa05b68f8159cfd2a20d 295 SMART SM00062 44 277 1.6E-66 T 14-09-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF ccrud_RS08435 3922fff33ea0aa05b68f8159cfd2a20d 295 Gene3D G3DSA:3.40.190.10 41 137 1.7E-25 T 14-09-2016 ccrud_RS08435 3922fff33ea0aa05b68f8159cfd2a20d 295 Gene3D G3DSA:3.40.190.10 236 277 1.7E-25 T 14-09-2016 ccrud_RS08435 3922fff33ea0aa05b68f8159cfd2a20d 295 PANTHER PTHR18966:SF234 57 274 3.4E-20 T 14-09-2016 ccrud_RS08435 3922fff33ea0aa05b68f8159cfd2a20d 295 Gene3D G3DSA:3.40.190.10 138 225 3.9E-16 T 14-09-2016 ccrud_RS08435 3922fff33ea0aa05b68f8159cfd2a20d 295 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 67 80 - T 14-09-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 ccrud_RS05220 dead62f0726b57bcd056553fb3373977 350 PANTHER PTHR37958:SF1 2 350 3.8E-50 T 14-09-2016 ccrud_RS05220 dead62f0726b57bcd056553fb3373977 350 PANTHER PTHR37958 2 350 3.8E-50 T 14-09-2016 ccrud_RS05220 dead62f0726b57bcd056553fb3373977 350 Pfam PF01699 Sodium/calcium exchanger protein 210 346 5.0E-9 T 14-09-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 ccrud_RS05220 dead62f0726b57bcd056553fb3373977 350 Pfam PF01699 Sodium/calcium exchanger protein 32 179 3.0E-12 T 14-09-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 ccrud_RS05975 bb536147608894882508a568692953be 237 SMART SM00479 18 187 5.3E-11 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III ccrud_RS05975 bb536147608894882508a568692953be 237 SUPERFAMILY SSF53098 17 201 1.07E-34 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS05975 bb536147608894882508a568692953be 237 Pfam PF00929 Exonuclease 21 177 4.0E-10 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III ccrud_RS05975 bb536147608894882508a568692953be 237 PANTHER PTHR30231 19 230 1.2E-41 T 14-09-2016 ccrud_RS05975 bb536147608894882508a568692953be 237 PANTHER PTHR30231:SF9 19 230 1.2E-41 T 14-09-2016 ccrud_RS05975 bb536147608894882508a568692953be 237 Gene3D G3DSA:3.30.420.10 14 188 3.2E-28 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 Gene3D G3DSA:3.40.630.10 373 440 1.5E-40 T 14-09-2016 ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 Gene3D G3DSA:3.40.630.10 5 203 1.5E-40 T 14-09-2016 ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 Pfam PF01546 Peptidase family M20/M25/M40 77 437 6.9E-30 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 PANTHER PTHR11014 271 441 4.2E-54 T 14-09-2016 ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 PANTHER PTHR11014 25 245 4.2E-54 T 14-09-2016 ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 Gene3D G3DSA:3.30.70.360 283 340 9.8E-20 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 Gene3D G3DSA:3.30.70.360 204 240 9.8E-20 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 SUPERFAMILY SSF55031 283 340 2.39E-12 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 SUPERFAMILY SSF55031 194 234 2.39E-12 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 Pfam PF07687 Peptidase dimerisation domain 191 336 2.3E-18 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 SUPERFAMILY SSF53187 348 440 2.6E-40 T 14-09-2016 ccrud_RS12720 317bc61a771f4add23a12c92fdd29aa6 441 SUPERFAMILY SSF53187 4 194 2.6E-40 T 14-09-2016 ccrud_RS08230 535b30c5048143f5112827527b7fc3ea 250 PANTHER PTHR18964:SF138 5 242 4.0E-60 T 14-09-2016 ccrud_RS08230 535b30c5048143f5112827527b7fc3ea 250 SUPERFAMILY SSF53067 6 246 8.79E-36 T 14-09-2016 ccrud_RS08230 535b30c5048143f5112827527b7fc3ea 250 Gene3D G3DSA:3.30.420.40 3 107 1.6E-40 T 14-09-2016 ccrud_RS08230 535b30c5048143f5112827527b7fc3ea 250 Pfam PF00480 ROK family 7 163 7.6E-17 T 14-09-2016 IPR000600 ROK family ccrud_RS08230 535b30c5048143f5112827527b7fc3ea 250 Gene3D G3DSA:3.30.420.40 108 246 1.0E-36 T 14-09-2016 ccrud_RS08230 535b30c5048143f5112827527b7fc3ea 250 PANTHER PTHR18964 5 242 4.0E-60 T 14-09-2016 ccrud_RS08950 707f59d64f3ff097cd8f683a52244e57 177 Gene3D G3DSA:1.10.10.10 4 107 1.8E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08950 707f59d64f3ff097cd8f683a52244e57 177 PANTHER PTHR33204:SF10 12 145 6.4E-30 T 14-09-2016 ccrud_RS08950 707f59d64f3ff097cd8f683a52244e57 177 SUPERFAMILY SSF46785 6 147 1.31E-31 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08950 707f59d64f3ff097cd8f683a52244e57 177 PANTHER PTHR33204 12 145 6.4E-30 T 14-09-2016 ccrud_RS08950 707f59d64f3ff097cd8f683a52244e57 177 Pfam PF01638 HxlR-like helix-turn-helix 20 107 3.7E-16 T 14-09-2016 IPR002577 Helix-turn-helix, HxlR type ccrud_RS13750 8333ccbf044bf1556d6237e9ec328738 324 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 10 313 1.2E-86 T 14-09-2016 IPR016833 Putative sodium bile acid cotransporter ccrud_RS13750 8333ccbf044bf1556d6237e9ec328738 324 PIRSF PIRSF026166 1 324 2.2E-122 T 14-09-2016 IPR016833 Putative sodium bile acid cotransporter ccrud_RS13750 8333ccbf044bf1556d6237e9ec328738 324 PANTHER PTHR18640 2 324 5.8E-81 T 14-09-2016 IPR016833 Putative sodium bile acid cotransporter ccrud_RS07575 995b7037e609d25dd2e6f2c1bc05e906 481 PANTHER PTHR30508 25 481 8.4E-241 T 14-09-2016 ccrud_RS07575 995b7037e609d25dd2e6f2c1bc05e906 481 Pfam PF01458 Uncharacterized protein family (UPF0051) 227 452 2.5E-73 T 14-09-2016 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 ccrud_RS07575 995b7037e609d25dd2e6f2c1bc05e906 481 TIGRFAM TIGR01980 sufB: FeS assembly protein SufB 26 472 6.5E-220 T 14-09-2016 IPR010231 SUF system FeS cluster assembly, SufB GO:0016226 ccrud_RS07575 995b7037e609d25dd2e6f2c1bc05e906 481 SUPERFAMILY SSF101960 48 478 2.88E-138 T 14-09-2016 ccrud_RS07575 995b7037e609d25dd2e6f2c1bc05e906 481 PANTHER PTHR30508:SF1 25 481 8.4E-241 T 14-09-2016 ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 1 112 7.9E-50 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 SUPERFAMILY SSF50104 1 112 3.61E-46 T 14-09-2016 IPR008991 Translation protein SH3-like domain ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 PIRSF PIRSF002191 1 113 1.3E-49 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 113 30.544 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 Pfam PF01245 Ribosomal protein L19 2 112 2.7E-50 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 PANTHER PTHR15680 1 113 2.7E-53 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 ProSitePatterns PS01015 Ribosomal protein L19 signature. 85 100 - T 14-09-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 PRINTS PR00061 Ribosomal protein L19 signature 33 62 9.8E-41 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 PRINTS PR00061 Ribosomal protein L19 signature 87 112 9.8E-41 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08870 0d8bc4e47e1c7861af647c4f5fecc23a 113 PRINTS PR00061 Ribosomal protein L19 signature 3 32 9.8E-41 T 14-09-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS01915 8e8ba2ecf0de85890c60234f3bcee7af 484 Pfam PF04432 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus 184 356 6.1E-20 T 14-09-2016 IPR007525 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal ccrud_RS01915 8e8ba2ecf0de85890c60234f3bcee7af 484 Pfam PF04422 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term 98 175 7.9E-18 T 14-09-2016 IPR007516 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal ccrud_RS12160 2c76ecc82d204da94d91757fcacf0274 314 Gene3D G3DSA:3.40.50.620 28 179 9.5E-9 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS12160 2c76ecc82d204da94d91757fcacf0274 314 SUPERFAMILY SSF52402 29 228 4.85E-38 T 14-09-2016 ccrud_RS12160 2c76ecc82d204da94d91757fcacf0274 314 Pfam PF01171 PP-loop family 32 196 4.9E-29 T 14-09-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal ccrud_RS12160 2c76ecc82d204da94d91757fcacf0274 314 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 17 303 16.526 T 14-09-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 ccrud_RS12160 2c76ecc82d204da94d91757fcacf0274 314 PANTHER PTHR11807:SF2 29 204 8.3E-29 T 14-09-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 ccrud_RS12160 2c76ecc82d204da94d91757fcacf0274 314 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 32 200 1.5E-36 T 14-09-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 ccrud_RS12160 2c76ecc82d204da94d91757fcacf0274 314 PANTHER PTHR11807 29 204 8.3E-29 T 14-09-2016 ccrud_RS12160 2c76ecc82d204da94d91757fcacf0274 314 Pfam PF09179 TilS substrate binding domain 246 310 1.6E-4 T 14-09-2016 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 ccrud_RS09885 69da9e4c476c66b0bfc9baccbcd945fe 319 Pfam PF02104 SURF1 family 39 237 1.1E-21 T 14-09-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 ccrud_RS00985 efc7eb36db72e68b7d5be6f5fa315b25 495 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 187 253 1.8E-5 T 14-09-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 ccrud_RS00985 efc7eb36db72e68b7d5be6f5fa315b25 495 PIRSF PIRSF012666 1 495 7.0E-222 T 14-09-2016 IPR016602 Uncharacterised conserved protein UCP012666 ccrud_RS00985 efc7eb36db72e68b7d5be6f5fa315b25 495 SUPERFAMILY SSF55931 39 455 1.96E-44 T 14-09-2016 ccrud_RS02115 6a86e344d8827ae637ed40ff8eed5592 248 Gene3D G3DSA:3.40.50.1240 3 247 3.7E-86 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS02115 6a86e344d8827ae637ed40ff8eed5592 248 Hamap MF_01039 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 3 230 41.951 T 14-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 ccrud_RS02115 6a86e344d8827ae637ed40ff8eed5592 248 SMART SM00855 5 189 6.7E-23 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS02115 6a86e344d8827ae637ed40ff8eed5592 248 PANTHER PTHR11931 1 248 1.7E-141 T 14-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 ccrud_RS02115 6a86e344d8827ae637ed40ff8eed5592 248 SUPERFAMILY SSF53254 5 221 1.39E-69 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS02115 6a86e344d8827ae637ed40ff8eed5592 248 TIGRFAM TIGR01258 pgm_1: phosphoglycerate mutase 1 family 5 246 2.0E-108 T 14-09-2016 IPR005952 Phosphoglycerate mutase 1 GO:0004619|GO:0006096|GO:0016868 KEGG: 00010+5.4.2.11|KEGG: 00260+5.4.2.11|KEGG: 00680+5.4.2.11|MetaCyc: PWY-1622|MetaCyc: PWY-5484|UniPathway: UPA00109 ccrud_RS02115 6a86e344d8827ae637ed40ff8eed5592 248 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 8 17 - T 14-09-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 ccrud_RS02115 6a86e344d8827ae637ed40ff8eed5592 248 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 144 221 3.6E-6 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS02115 6a86e344d8827ae637ed40ff8eed5592 248 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 125 1.3E-27 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS03605 9fb34a8654b7849f88748c084d5a9404 520 PANTHER PTHR33392:SF6 30 160 4.4E-78 T 14-09-2016 ccrud_RS03605 9fb34a8654b7849f88748c084d5a9404 520 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 392 478 8.9E-13 T 14-09-2016 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain ccrud_RS03605 9fb34a8654b7849f88748c084d5a9404 520 PANTHER PTHR33392 30 160 4.4E-78 T 14-09-2016 ccrud_RS03605 9fb34a8654b7849f88748c084d5a9404 520 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 116 286 2.0E-34 T 14-09-2016 IPR004474 Cell envelope-related transcriptional attenuator domain ccrud_RS03605 9fb34a8654b7849f88748c084d5a9404 520 PANTHER PTHR33392:SF6 180 518 4.4E-78 T 14-09-2016 ccrud_RS03605 9fb34a8654b7849f88748c084d5a9404 520 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 116 286 6.8E-39 T 14-09-2016 IPR004474 Cell envelope-related transcriptional attenuator domain ccrud_RS03605 9fb34a8654b7849f88748c084d5a9404 520 PANTHER PTHR33392 180 518 4.4E-78 T 14-09-2016 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 Pfam PF00285 Citrate synthase, C-terminal domain 31 396 1.0E-133 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 SUPERFAMILY SSF48256 19 413 1.83E-152 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 ProSitePatterns PS00480 Citrate synthase signature. 289 301 - T 14-09-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 PIRSF PIRSF001369 21 413 6.9E-169 T 14-09-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 2 406 2.3E-162 T 14-09-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 Gene3D G3DSA:1.10.230.10 266 358 2.5E-38 T 14-09-2016 IPR016143 Citrate synthase-like, small alpha subdomain ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 PANTHER PTHR11739 23 413 9.8E-182 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 PRINTS PR00143 Citrate synthase signature 344 360 2.7E-52 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 PRINTS PR00143 Citrate synthase signature 149 162 2.7E-52 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 PRINTS PR00143 Citrate synthase signature 203 218 2.7E-52 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 PRINTS PR00143 Citrate synthase signature 364 378 2.7E-52 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 PRINTS PR00143 Citrate synthase signature 282 302 2.7E-52 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 PRINTS PR00143 Citrate synthase signature 225 253 2.7E-52 T 14-09-2016 IPR002020 Citrate synthase GO:0046912 ccrud_RS04085 816ed1f299bec4a8f91275256d0a66a8 413 Gene3D G3DSA:1.10.580.10 36 265 1.7E-93 T 14-09-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 PANTHER PTHR32182:SF0 1 358 6.2E-54 T 14-09-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 377 1.6E-110 T 14-09-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 Gene3D G3DSA:3.40.50.300 1 167 1.1E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 Gene3D G3DSA:3.40.50.300 254 356 1.1E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 PANTHER PTHR32182 1 358 6.2E-54 T 14-09-2016 ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 ProSitePatterns PS00618 RecF protein signature 2. 325 343 - T 14-09-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 359 8.8E-15 T 14-09-2016 IPR003395 RecF/RecN/SMC, N-terminal ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 ProSitePatterns PS00617 RecF protein signature 1. 117 137 - T 14-09-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 394 86.683 T 14-09-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 SUPERFAMILY SSF52540 1 227 3.29E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00020 d45793e446dc5b0edb174f674a25acd4 394 SUPERFAMILY SSF52540 258 349 3.29E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10105 fc51824f6b49cadf19625cd72fe7e28a 241 PIRSF PIRSF015601 2 241 3.4E-43 T 14-09-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS10105 fc51824f6b49cadf19625cd72fe7e28a 241 Pfam PF04452 RNA methyltransferase 19 234 8.0E-58 T 14-09-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS10105 fc51824f6b49cadf19625cd72fe7e28a 241 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 11 236 1.9E-34 T 14-09-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 ccrud_RS10105 fc51824f6b49cadf19625cd72fe7e28a 241 SUPERFAMILY SSF88697 4 69 2.46E-10 T 14-09-2016 IPR015947 PUA-like domain ccrud_RS10105 fc51824f6b49cadf19625cd72fe7e28a 241 SUPERFAMILY SSF75217 76 238 6.98E-40 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases ccrud_RS10105 fc51824f6b49cadf19625cd72fe7e28a 241 Gene3D G3DSA:3.40.1280.10 2 241 4.6E-62 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ccrud_RS10105 fc51824f6b49cadf19625cd72fe7e28a 241 PANTHER PTHR30027 1 241 1.6E-46 T 14-09-2016 ccrud_RS10105 fc51824f6b49cadf19625cd72fe7e28a 241 PANTHER PTHR30027:SF3 1 241 1.6E-46 T 14-09-2016 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 Gene3D G3DSA:3.30.300.20 17 106 5.3E-32 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 Gene3D G3DSA:3.30.1140.32 108 207 7.4E-43 T 14-09-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 14-09-2016 IPR018280 Ribosomal protein S3, conserved site ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 SUPERFAMILY SSF54814 2 105 2.62E-36 T 14-09-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 36.82 T 14-09-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 Pfam PF07650 KH domain 37 108 4.7E-18 T 14-09-2016 IPR004044 K Homology domain, type 2 GO:0003723 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 6.5E-91 T 14-09-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 PANTHER PTHR11760 2 240 1.3E-124 T 14-09-2016 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 PANTHER PTHR11760:SF19 2 240 1.3E-124 T 14-09-2016 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 SMART SM00322 59 124 2.3E-7 T 14-09-2016 IPR004087 K Homology domain GO:0003676 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 SUPERFAMILY SSF54821 106 206 2.49E-37 T 14-09-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 ccrud_RS02635 8a082990e35c33118e0f11e3ec04b928 248 Pfam PF00189 Ribosomal protein S3, C-terminal domain 119 202 2.5E-37 T 14-09-2016 ccrud_RS06920 009f5133b10ffaafff7f15c15e414cca 166 Pfam PF06445 GyrI-like small molecule binding domain 23 166 1.5E-8 T 14-09-2016 IPR029442 GyrI-like small molecule binding domain ccrud_RS06920 009f5133b10ffaafff7f15c15e414cca 166 Gene3D G3DSA:3.20.80.10 20 166 3.7E-11 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain ccrud_RS06920 009f5133b10ffaafff7f15c15e414cca 166 SMART SM00871 9 166 6.3E-12 T 14-09-2016 IPR010499 Bacterial transcription activator, effector binding ccrud_RS06920 009f5133b10ffaafff7f15c15e414cca 166 SUPERFAMILY SSF55136 34 163 9.42E-16 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 62 388 7.4E-47 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 92 106 - T 14-09-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 10 405 50.792 T 14-09-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 Gene3D G3DSA:3.40.50.1100 189 407 2.8E-91 T 14-09-2016 ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 Gene3D G3DSA:3.40.50.1100 110 188 7.6E-21 T 14-09-2016 ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 SUPERFAMILY SSF53686 14 402 4.58E-138 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 PIRSF PIRSF001413 7 410 4.9E-161 T 14-09-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 15 404 2.5E-181 T 14-09-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 PANTHER PTHR10314:SF3 15 408 4.4E-209 T 14-09-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 ccrud_RS13710 b6b8dbb583ca20949b951be4f5023f89 417 PANTHER PTHR10314 15 408 4.4E-209 T 14-09-2016 ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 SUPERFAMILY SSF52518 20 170 3.04E-23 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 PANTHER PTHR18968 10 544 1.2E-82 T 14-09-2016 ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 165 2.1E-26 T 14-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 SUPERFAMILY SSF52518 339 530 7.69E-20 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 Gene3D G3DSA:3.40.50.970 314 532 1.3E-18 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 TIGRFAM TIGR00173 menD: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase 10 405 1.4E-89 T 14-09-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 PANTHER PTHR18968:SF114 10 544 1.2E-82 T 14-09-2016 ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 Gene3D G3DSA:3.40.50.970 5 171 1.0E-35 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 Hamap MF_01659 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [menD]. 2 543 27.869 T 14-09-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 ccrud_RS02430 69e8951e6800c13de15c32302b4a23e6 544 PIRSF PIRSF004983 1 544 2.0E-140 T 14-09-2016 IPR004433 Menaquinone biosynthesis protein MenD GO:0009234|GO:0030976|GO:0070204 KEGG: 00130+2.2.1.9|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 PANTHER PTHR22773 3 588 3.5E-158 T 14-09-2016 ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 PANTHER PTHR22773:SF85 3 588 3.5E-158 T 14-09-2016 ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 307 319 4.1E-28 T 14-09-2016 ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 417 436 4.1E-28 T 14-09-2016 ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 217 238 4.1E-28 T 14-09-2016 ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 4.1E-28 T 14-09-2016 ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 239 265 4.1E-28 T 14-09-2016 ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 Pfam PF00361 Proton-conducting membrane transporter 127 407 1.1E-65 T 14-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 811 934 4.9E-31 T 14-09-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 60 105 1.5E-8 T 14-09-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal ccrud_RS12320 2044902099aa484d5189e0cdc4b9cc4b 1021 Pfam PF13244 Domain of unknown function (DUF4040) 618 682 6.1E-21 T 14-09-2016 IPR025383 Domain of unknown function DUF4040 ccrud_RS05170 85eece0058a57c2f9c7ec7d94d9ebacd 307 Pfam PF04657 Putative inner membrane exporter, YdcZ 164 304 5.5E-40 T 14-09-2016 IPR006750 Putative inner membrane exporter, YdcZ ccrud_RS05170 85eece0058a57c2f9c7ec7d94d9ebacd 307 Pfam PF04657 Putative inner membrane exporter, YdcZ 3 141 4.4E-39 T 14-09-2016 IPR006750 Putative inner membrane exporter, YdcZ ccrud_RS05170 85eece0058a57c2f9c7ec7d94d9ebacd 307 PANTHER PTHR34821:SF2 156 306 1.4E-34 T 14-09-2016 ccrud_RS05170 85eece0058a57c2f9c7ec7d94d9ebacd 307 PANTHER PTHR34821 156 306 1.4E-34 T 14-09-2016 ccrud_RS04870 d832550692bcdb7d77725cd289af8a8d 366 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 15 362 1.1E-160 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS04870 d832550692bcdb7d77725cd289af8a8d 366 PANTHER PTHR21225 6 362 8.3E-190 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS04870 d832550692bcdb7d77725cd289af8a8d 366 SUPERFAMILY SSF51569 16 361 2.72E-121 T 14-09-2016 ccrud_RS04870 d832550692bcdb7d77725cd289af8a8d 366 Pfam PF00793 DAHP synthetase I family 48 350 6.9E-102 T 14-09-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 ccrud_RS04870 d832550692bcdb7d77725cd289af8a8d 366 PIRSF PIRSF001361 1 365 1.7E-151 T 14-09-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS04870 d832550692bcdb7d77725cd289af8a8d 366 Gene3D G3DSA:3.20.20.70 18 364 2.9E-142 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 PIRSF PIRSF001373 1 517 1.3E-209 T 14-09-2016 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 Gene3D G3DSA:3.60.120.10 12 510 8.1E-139 T 14-09-2016 IPR005801 ADC synthase GO:0009058 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 Pfam PF04715 Anthranilate synthase component I, N terminal region 20 182 1.6E-6 T 14-09-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 PANTHER PTHR11236 7 517 5.4E-168 T 14-09-2016 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 Pfam PF00425 chorismate binding enzyme 235 498 1.7E-82 T 14-09-2016 IPR015890 Chorismate-utilising enzyme, C-terminal ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 TIGRFAM TIGR00565 trpE_proteo: anthranilate synthase component I 14 508 9.9E-163 T 14-09-2016 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial GO:0004049|GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 SUPERFAMILY SSF56322 10 507 1.05E-132 T 14-09-2016 IPR005801 ADC synthase GO:0009058 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 PANTHER PTHR11236:SF22 7 517 5.4E-168 T 14-09-2016 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 PRINTS PR00095 Anthranilate synthase component I signature 360 373 4.8E-22 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 PRINTS PR00095 Anthranilate synthase component I signature 440 454 4.8E-22 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 PRINTS PR00095 Anthranilate synthase component I signature 346 359 4.8E-22 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS13690 93937e4e402a8e997d6f451578e8d5c7 518 PRINTS PR00095 Anthranilate synthase component I signature 455 469 4.8E-22 T 14-09-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 27 85 1.7E-7 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 SUPERFAMILY SSF50129 1 136 1.43E-37 T 14-09-2016 IPR011032 GroES-like ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 Gene3D G3DSA:3.90.180.10 1 144 5.5E-46 T 14-09-2016 IPR011032 GroES-like ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 SMART SM00829 10 316 3.0E-33 T 14-09-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 PANTHER PTHR11695:SF610 15 318 7.8E-132 T 14-09-2016 ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 Gene3D G3DSA:3.40.50.720 145 252 3.2E-28 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 SUPERFAMILY SSF51735 109 280 3.84E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 138 159 - T 14-09-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 PANTHER PTHR11695 15 318 7.8E-132 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 Pfam PF00107 Zinc-binding dehydrogenase 149 264 8.7E-26 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS01080 70f870e47638ea2f508b99eae391aa09 318 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 1 317 1.3E-127 T 14-09-2016 IPR014189 Quinone oxidoreductase PIG3 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- ccrud_RS06125 ec97256c18840f5dca2b65f59b0cd3b0 329 PANTHER PTHR11562:SF17 2 327 1.8E-101 T 14-09-2016 ccrud_RS06125 ec97256c18840f5dca2b65f59b0cd3b0 329 PANTHER PTHR11562 2 327 1.8E-101 T 14-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 ccrud_RS06125 ec97256c18840f5dca2b65f59b0cd3b0 329 Gene3D G3DSA:3.30.70.1350 247 319 3.9E-5 T 14-09-2016 IPR027470 Cation efflux protein, cytoplasmic domain ccrud_RS06125 ec97256c18840f5dca2b65f59b0cd3b0 329 SUPERFAMILY SSF160240 247 321 1.44E-9 T 14-09-2016 ccrud_RS06125 ec97256c18840f5dca2b65f59b0cd3b0 329 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 46 321 3.4E-78 T 14-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 ccrud_RS06125 ec97256c18840f5dca2b65f59b0cd3b0 329 Pfam PF01545 Cation efflux family 48 239 1.1E-45 T 14-09-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 ccrud_RS06125 ec97256c18840f5dca2b65f59b0cd3b0 329 Gene3D G3DSA:1.20.1510.10 46 239 1.5E-56 T 14-09-2016 IPR027469 Cation efflux protein transmembrane domain ccrud_RS06125 ec97256c18840f5dca2b65f59b0cd3b0 329 SUPERFAMILY SSF161111 44 240 5.36E-53 T 14-09-2016 ccrud_RS02615 772a7e6aabda1ad135df49f639e7ec11 101 PANTHER PTHR11620 6 97 2.7E-35 T 14-09-2016 ccrud_RS02615 772a7e6aabda1ad135df49f639e7ec11 101 Gene3D G3DSA:3.30.70.330 6 98 3.4E-35 T 14-09-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 ccrud_RS02615 772a7e6aabda1ad135df49f639e7ec11 101 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 8 98 21.851 T 14-09-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02615 772a7e6aabda1ad135df49f639e7ec11 101 SUPERFAMILY SSF54189 5 97 9.71E-33 T 14-09-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02615 772a7e6aabda1ad135df49f639e7ec11 101 Pfam PF00276 Ribosomal protein L23 9 91 7.2E-32 T 14-09-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 Gene3D G3DSA:2.40.50.140 16 168 5.5E-45 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 SUPERFAMILY SSF55681 175 522 2.3E-95 T 14-09-2016 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 PANTHER PTHR22594 2 525 9.2E-204 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 PANTHER PTHR22594:SF4 2 525 9.2E-204 T 14-09-2016 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 524 35.115 T 14-09-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 SUPERFAMILY SSF50249 14 168 4.93E-32 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 Pfam PF01336 OB-fold nucleic acid binding domain 81 158 2.8E-10 T 14-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 PRINTS PR00982 Lysyl-tRNA synthetase signature 228 244 4.9E-31 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 PRINTS PR00982 Lysyl-tRNA synthetase signature 212 222 4.9E-31 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 PRINTS PR00982 Lysyl-tRNA synthetase signature 407 423 4.9E-31 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 PRINTS PR00982 Lysyl-tRNA synthetase signature 257 270 4.9E-31 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 PRINTS PR00982 Lysyl-tRNA synthetase signature 275 292 4.9E-31 T 14-09-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 Pfam PF00152 tRNA synthetases class II (D, K and N) 175 521 3.8E-68 T 14-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 17 524 1.7E-140 T 14-09-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 ccrud_RS12105 5478d96c8164fe282d87f52c3fe95d69 526 Gene3D G3DSA:3.30.930.10 174 520 7.7E-96 T 14-09-2016 ccrud_RS11680 9ee987d264e615f298029ec19def1a5b 223 PIRSF PIRSF001586 1 223 6.7E-80 T 14-09-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11680 9ee987d264e615f298029ec19def1a5b 223 SUPERFAMILY SSF52317 3 218 5.42E-68 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS11680 9ee987d264e615f298029ec19def1a5b 223 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 3 219 39.224 T 14-09-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11680 9ee987d264e615f298029ec19def1a5b 223 PANTHER PTHR10099 4 218 4.9E-104 T 14-09-2016 ccrud_RS11680 9ee987d264e615f298029ec19def1a5b 223 Gene3D G3DSA:3.40.50.880 3 219 1.1E-36 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS11680 9ee987d264e615f298029ec19def1a5b 223 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 4 208 2.5E-38 T 14-09-2016 ccrud_RS11680 9ee987d264e615f298029ec19def1a5b 223 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 4 218 4.6E-82 T 14-09-2016 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 ccrud_RS11680 9ee987d264e615f298029ec19def1a5b 223 SMART SM01211 2 221 3.6E-121 T 14-09-2016 ccrud_RS05940 c92e04aceac5bc5b406f3bfee10c70e1 168 PANTHER PTHR23091:SF237 6 147 5.5E-25 T 14-09-2016 ccrud_RS05940 c92e04aceac5bc5b406f3bfee10c70e1 168 Gene3D G3DSA:3.40.630.30 2 133 3.1E-20 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS05940 c92e04aceac5bc5b406f3bfee10c70e1 168 SUPERFAMILY SSF55729 3 147 4.33E-27 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS05940 c92e04aceac5bc5b406f3bfee10c70e1 168 Pfam PF13527 Acetyltransferase (GNAT) domain 6 131 2.6E-11 T 14-09-2016 ccrud_RS05940 c92e04aceac5bc5b406f3bfee10c70e1 168 PANTHER PTHR23091 6 147 5.5E-25 T 14-09-2016 ccrud_RS11200 ff5001a882e43dbaef9c69ed2654dc50 135 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 134 7.3E-36 T 14-09-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 ccrud_RS11200 ff5001a882e43dbaef9c69ed2654dc50 135 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 3 130 1.4E-18 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 ccrud_RS11200 ff5001a882e43dbaef9c69ed2654dc50 135 Gene3D G3DSA:3.90.470.20 1 132 1.2E-39 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 ccrud_RS11200 ff5001a882e43dbaef9c69ed2654dc50 135 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 7 134 6.0E-9 T 14-09-2016 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 ccrud_RS11200 ff5001a882e43dbaef9c69ed2654dc50 135 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 2 134 17.841 T 14-09-2016 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 ccrud_RS11200 ff5001a882e43dbaef9c69ed2654dc50 135 SUPERFAMILY SSF56214 2 132 3.01E-23 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 ccrud_RS12140 0f476c2e7c81ee96882a4aed587ded79 284 Gene3D G3DSA:3.20.20.20 11 277 2.6E-96 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS12140 0f476c2e7c81ee96882a4aed587ded79 284 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 48 61 - T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS12140 0f476c2e7c81ee96882a4aed587ded79 284 PANTHER PTHR20941 11 281 4.1E-98 T 14-09-2016 ccrud_RS12140 0f476c2e7c81ee96882a4aed587ded79 284 Pfam PF00809 Pterin binding enzyme 15 261 4.4E-76 T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS12140 0f476c2e7c81ee96882a4aed587ded79 284 SUPERFAMILY SSF51717 12 277 1.01E-84 T 14-09-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 ccrud_RS12140 0f476c2e7c81ee96882a4aed587ded79 284 PANTHER PTHR20941:SF1 11 281 4.1E-98 T 14-09-2016 ccrud_RS12140 0f476c2e7c81ee96882a4aed587ded79 284 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 14 29 - T 14-09-2016 IPR000489 Pterin-binding domain GO:0042558 ccrud_RS12140 0f476c2e7c81ee96882a4aed587ded79 284 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 14 274 4.8E-84 T 14-09-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 ccrud_RS06090 57aacfda25dc0639f8b297a8ebaf957f 352 Pfam PF07681 DoxX 191 273 1.5E-11 T 14-09-2016 IPR032808 DoxX family ccrud_RS06090 57aacfda25dc0639f8b297a8ebaf957f 352 PANTHER PTHR33452 173 323 9.1E-14 T 14-09-2016 ccrud_RS06090 57aacfda25dc0639f8b297a8ebaf957f 352 PANTHER PTHR33452:SF1 173 323 9.1E-14 T 14-09-2016 ccrud_RS11625 1c88a821ed36bbad28ec947fe709a5cd 372 PANTHER PTHR12358:SF34 1 353 3.1E-50 T 14-09-2016 ccrud_RS11625 1c88a821ed36bbad28ec947fe709a5cd 372 PANTHER PTHR12358 1 353 3.1E-50 T 14-09-2016 ccrud_RS11625 1c88a821ed36bbad28ec947fe709a5cd 372 SUPERFAMILY SSF111331 15 343 6.32E-53 T 14-09-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain ccrud_RS11625 1c88a821ed36bbad28ec947fe709a5cd 372 Pfam PF00781 Diacylglycerol kinase catalytic domain 16 147 2.3E-30 T 14-09-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 ccrud_RS11625 1c88a821ed36bbad28ec947fe709a5cd 372 SMART SM00046 16 152 1.4E-13 T 14-09-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 ccrud_RS11995 80e3ec210c3768eaaa3133a4f3ce7352 198 Pfam PF02559 CarD-like/TRCF domain 3 110 5.7E-15 T 14-09-2016 IPR003711 CarD-like/TRCF domain ccrud_RS11995 80e3ec210c3768eaaa3133a4f3ce7352 198 PANTHER PTHR38447 1 197 9.5E-57 T 14-09-2016 ccrud_RS11995 80e3ec210c3768eaaa3133a4f3ce7352 198 SUPERFAMILY SSF141259 2 66 2.88E-15 T 14-09-2016 IPR003711 CarD-like/TRCF domain ccrud_RS11995 80e3ec210c3768eaaa3133a4f3ce7352 198 SMART SM01058 2 112 2.4E-30 T 14-09-2016 IPR003711 CarD-like/TRCF domain ccrud_RS10600 1b593e82a6ebe094f4298b287e0a4287 196 PANTHER PTHR33169 1 190 3.8E-18 T 14-09-2016 ccrud_RS10600 1b593e82a6ebe094f4298b287e0a4287 196 Pfam PF03551 Transcriptional regulator PadR-like family 7 81 8.4E-10 T 14-09-2016 IPR005149 Transcription regulator PadR, N-terminal ccrud_RS10600 1b593e82a6ebe094f4298b287e0a4287 196 SUPERFAMILY SSF46785 3 190 1.63E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10600 1b593e82a6ebe094f4298b287e0a4287 196 PANTHER PTHR33169:SF4 1 190 3.8E-18 T 14-09-2016 ccrud_RS10600 1b593e82a6ebe094f4298b287e0a4287 196 Gene3D G3DSA:1.10.10.10 1 84 5.6E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11585 d5d8409364b39744379950b29adc3cf4 381 Pfam PF01207 Dihydrouridine synthase (Dus) 15 329 3.4E-106 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 ccrud_RS11585 d5d8409364b39744379950b29adc3cf4 381 Gene3D G3DSA:3.20.20.70 10 261 3.1E-81 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS11585 d5d8409364b39744379950b29adc3cf4 381 Gene3D G3DSA:1.10.1200.80 267 342 1.2E-22 T 14-09-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 ccrud_RS11585 d5d8409364b39744379950b29adc3cf4 381 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 104 122 - T 14-09-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 ccrud_RS11585 d5d8409364b39744379950b29adc3cf4 381 PANTHER PTHR11082:SF25 2 367 5.4E-151 T 14-09-2016 ccrud_RS11585 d5d8409364b39744379950b29adc3cf4 381 PIRSF PIRSF006621 2 344 4.7E-111 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 ccrud_RS11585 d5d8409364b39744379950b29adc3cf4 381 PANTHER PTHR11082 2 367 5.4E-151 T 14-09-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 ccrud_RS11585 d5d8409364b39744379950b29adc3cf4 381 SUPERFAMILY SSF51395 13 330 1.34E-80 T 14-09-2016 ccrud_RS11585 d5d8409364b39744379950b29adc3cf4 381 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 5 333 4.3E-122 T 14-09-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 PANTHER PTHR30001 169 797 6.8E-202 T 14-09-2016 ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 SMART SM00316 306 385 1.5E-6 T 14-09-2016 IPR022967 RNA-binding domain, S1 ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 26 74 7.9E-9 T 14-09-2016 IPR006847 Translation initiation factor IF-2, N-terminal ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 PANTHER PTHR30001 823 1003 6.8E-202 T 14-09-2016 ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 283 693 5.0E-147 T 14-09-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 Pfam PF10150 Ribonuclease E/G family 387 666 3.3E-100 T 14-09-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 Gene3D G3DSA:2.40.50.140 303 391 8.9E-29 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 PANTHER PTHR30001:SF0 823 1003 6.8E-202 T 14-09-2016 ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 SUPERFAMILY SSF50249 308 391 2.94E-16 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS10520 e0fd1c8576ed394e1ffc07c7d14b6d76 1033 PANTHER PTHR30001:SF0 169 797 6.8E-202 T 14-09-2016 ccrud_RS00720 734aedf189ab2fdd58461567baab01ee 379 Pfam PF05145 Putative ammonia monooxygenase 48 367 7.0E-67 T 14-09-2016 IPR007820 AbrB family GO:0010468|GO:0016021 ccrud_RS00720 734aedf189ab2fdd58461567baab01ee 379 PIRSF PIRSF038991 14 379 6.1E-71 T 14-09-2016 IPR007820 AbrB family GO:0010468|GO:0016021 ccrud_RS00720 734aedf189ab2fdd58461567baab01ee 379 PANTHER PTHR38457 17 379 1.4E-32 T 14-09-2016 ccrud_RS00720 734aedf189ab2fdd58461567baab01ee 379 PANTHER PTHR38457:SF1 17 379 1.4E-32 T 14-09-2016 ccrud_RS00720 734aedf189ab2fdd58461567baab01ee 379 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 25 182 3.4E-34 T 14-09-2016 IPR017516 AbrB duplication ccrud_RS00720 734aedf189ab2fdd58461567baab01ee 379 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 215 370 4.3E-33 T 14-09-2016 IPR017516 AbrB duplication ccrud_RS02090 f31b672f83bc132e6f1ef818e93a264e 167 Pfam PF10698 Protein of unknown function (DUF2505) 7 163 1.2E-41 T 14-09-2016 IPR019639 Protein of unknown function DUF2505 ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 ProSitePatterns PS00211 ABC transporters family signature. 497 511 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 SUPERFAMILY SSF90123 7 313 3.53E-50 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 Gene3D G3DSA:3.40.50.300 358 586 4.7E-77 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 Pfam PF00664 ABC transporter transmembrane region 21 296 2.4E-29 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 PANTHER PTHR24221 354 604 1.6E-180 T 14-09-2016 ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 PANTHER PTHR24221 1 330 1.6E-180 T 14-09-2016 ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 SUPERFAMILY SSF52540 352 593 1.43E-83 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 Pfam PF00005 ABC transporter 377 525 1.8E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 Gene3D G3DSA:1.20.1560.10 6 327 2.0E-50 T 14-09-2016 ccrud_RS10150 061fabf96e1dbba67453f7f71278bf81 621 SMART SM00382 385 571 2.6E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS11815 46803448a9e1c1fbf3c6cdd7001dbc17 359 SUPERFAMILY SSF51182 51 321 1.21E-20 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS11815 46803448a9e1c1fbf3c6cdd7001dbc17 359 Gene3D G3DSA:2.60.120.10 28 130 2.3E-10 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS11815 46803448a9e1c1fbf3c6cdd7001dbc17 359 Gene3D G3DSA:2.60.120.10 209 357 1.3E-33 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS11815 46803448a9e1c1fbf3c6cdd7001dbc17 359 Pfam PF07883 Cupin domain 246 299 1.0E-13 T 14-09-2016 IPR013096 Cupin 2, conserved barrel ccrud_RS12220 f91f9e6b2a1638aef272101f2fdeacac 96 Gene3D G3DSA:3.40.250.10 12 95 1.0E-25 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12220 f91f9e6b2a1638aef272101f2fdeacac 96 SMART SM00450 1 93 1.4E-17 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12220 f91f9e6b2a1638aef272101f2fdeacac 96 Pfam PF00581 Rhodanese-like domain 13 89 5.0E-11 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12220 f91f9e6b2a1638aef272101f2fdeacac 96 PANTHER PTHR12231 12 95 8.7E-12 T 14-09-2016 ccrud_RS12220 f91f9e6b2a1638aef272101f2fdeacac 96 SUPERFAMILY SSF52821 12 95 6.55E-28 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS03715 c8b111d6be35ea55cd1283c7d9062a4a 294 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 36 267 5.2E-39 T 14-09-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 ccrud_RS03715 c8b111d6be35ea55cd1283c7d9062a4a 294 Gene3D G3DSA:3.40.50.300 77 226 7.3E-43 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03715 c8b111d6be35ea55cd1283c7d9062a4a 294 Pfam PF03193 Protein of unknown function, DUF258 60 226 4.1E-41 T 14-09-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 ccrud_RS03715 c8b111d6be35ea55cd1283c7d9062a4a 294 SUPERFAMILY SSF52540 77 248 8.03E-37 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03715 c8b111d6be35ea55cd1283c7d9062a4a 294 Gene3D G3DSA:1.10.40.50 228 287 1.7E-5 T 14-09-2016 ccrud_RS03715 c8b111d6be35ea55cd1283c7d9062a4a 294 PANTHER PTHR32120 1 267 1.8E-61 T 14-09-2016 ccrud_RS05575 ef0ac0a248ebea2b335ac4076700874f 356 SUPERFAMILY SSF56796 14 351 4.19E-80 T 14-09-2016 ccrud_RS05575 ef0ac0a248ebea2b335ac4076700874f 356 Gene3D G3DSA:3.40.50.1970 3 158 3.9E-27 T 14-09-2016 ccrud_RS05575 ef0ac0a248ebea2b335ac4076700874f 356 Pfam PF00465 Iron-containing alcohol dehydrogenase 13 338 1.0E-72 T 14-09-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 ccrud_RS05575 ef0ac0a248ebea2b335ac4076700874f 356 PANTHER PTHR11496:SF76 67 352 1.7E-70 T 14-09-2016 ccrud_RS05575 ef0ac0a248ebea2b335ac4076700874f 356 Gene3D G3DSA:1.20.1090.10 160 347 3.4E-43 T 14-09-2016 ccrud_RS05575 ef0ac0a248ebea2b335ac4076700874f 356 PANTHER PTHR11496 67 352 1.7E-70 T 14-09-2016 ccrud_RS01440 0d16148b1a18c2823656ad9ee57ffd95 151 SUPERFAMILY SSF89095 4 150 2.14E-38 T 14-09-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 ccrud_RS01440 0d16148b1a18c2823656ad9ee57ffd95 151 Gene3D G3DSA:1.10.1510.10 3 91 1.7E-29 T 14-09-2016 ccrud_RS01440 0d16148b1a18c2823656ad9ee57ffd95 151 PANTHER PTHR28055:SF1 1 151 2.3E-44 T 14-09-2016 ccrud_RS01440 0d16148b1a18c2823656ad9ee57ffd95 151 Pfam PF09424 Yqey-like protein 5 149 2.2E-51 T 14-09-2016 IPR019004 Uncharacterised domain YOR215C, mitochondrial ccrud_RS01440 0d16148b1a18c2823656ad9ee57ffd95 151 PANTHER PTHR28055 1 151 2.3E-44 T 14-09-2016 ccrud_RS01440 0d16148b1a18c2823656ad9ee57ffd95 151 Gene3D G3DSA:1.10.10.410 93 150 4.6E-21 T 14-09-2016 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal ccrud_RS05935 ddbc993b5fca38cfa0faddf52edb5b5d 75 Pfam PF13560 Helix-turn-helix domain 7 62 8.4E-10 T 14-09-2016 ccrud_RS05935 ddbc993b5fca38cfa0faddf52edb5b5d 75 SUPERFAMILY SSF47413 2 65 9.38E-13 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS05935 ddbc993b5fca38cfa0faddf52edb5b5d 75 Gene3D G3DSA:1.10.260.40 4 69 3.8E-13 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS05935 ddbc993b5fca38cfa0faddf52edb5b5d 75 TIGRFAM TIGR03070 couple_hipB: transcriptional regulator, y4mF family 6 63 1.0E-25 T 14-09-2016 IPR017507 Transcription regulator, HipB-like ccrud_RS05935 ddbc993b5fca38cfa0faddf52edb5b5d 75 SMART SM00530 11 66 9.6E-7 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS09115 7921974228971b93aabdf644d8e84bd3 442 Gene3D G3DSA:3.30.428.10 224 405 6.0E-26 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 ccrud_RS09115 7921974228971b93aabdf644d8e84bd3 442 Pfam PF16268 Domain of unknown function (DUF4921) 15 438 4.5E-219 T 14-09-2016 IPR032576 Domain of unknown function DUF4921 ccrud_RS09115 7921974228971b93aabdf644d8e84bd3 442 SUPERFAMILY SSF54197 14 124 1.26E-24 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 ccrud_RS09115 7921974228971b93aabdf644d8e84bd3 442 SUPERFAMILY SSF54197 168 262 1.26E-24 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 ccrud_RS07925 7d70278d0f55b5c42521aab00e3352a1 271 Pfam PF04228 Putative neutral zinc metallopeptidase 6 261 4.6E-65 T 14-09-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative ccrud_RS07925 7d70278d0f55b5c42521aab00e3352a1 271 PANTHER PTHR30168 1 268 1.3E-83 T 14-09-2016 ccrud_RS07925 7d70278d0f55b5c42521aab00e3352a1 271 SUPERFAMILY SSF55486 117 246 1.17E-6 T 14-09-2016 ccrud_RS09365 94914bb4ccd5a18a9309658c969fb025 192 ProSitePatterns PS00855 Signal peptidases II signature. 119 131 - T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 ccrud_RS09365 94914bb4ccd5a18a9309658c969fb025 192 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 74 82 7.4E-16 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 ccrud_RS09365 94914bb4ccd5a18a9309658c969fb025 192 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 116 131 7.4E-16 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 ccrud_RS09365 94914bb4ccd5a18a9309658c969fb025 192 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 154 170 7.4E-16 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 ccrud_RS09365 94914bb4ccd5a18a9309658c969fb025 192 PANTHER PTHR33695 6 187 5.0E-42 T 14-09-2016 ccrud_RS09365 94914bb4ccd5a18a9309658c969fb025 192 TIGRFAM TIGR00077 lspA: signal peptidase II 23 179 2.4E-28 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 ccrud_RS09365 94914bb4ccd5a18a9309658c969fb025 192 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 27 179 14.252 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 ccrud_RS09365 94914bb4ccd5a18a9309658c969fb025 192 Pfam PF01252 Signal peptidase (SPase) II 35 173 4.3E-30 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 ccrud_RS09365 94914bb4ccd5a18a9309658c969fb025 192 PANTHER PTHR33695:SF1 6 187 5.0E-42 T 14-09-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 ccrud_RS10215 b12ccca22d080c7f35579de36b84b8c8 328 SUPERFAMILY SSF50129 8 162 3.8E-29 T 14-09-2016 IPR011032 GroES-like ccrud_RS10215 b12ccca22d080c7f35579de36b84b8c8 328 TIGRFAM TIGR03366 HpnZ_proposed: putative phosphonate catabolism associated alcohol dehydrogenase 23 309 6.5E-108 T 14-09-2016 IPR017743 Alcohol dehydrogenase, phosphonate catabolism-associated, putative ccrud_RS10215 b12ccca22d080c7f35579de36b84b8c8 328 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 129 8.0E-16 T 14-09-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 ccrud_RS10215 b12ccca22d080c7f35579de36b84b8c8 328 Pfam PF00107 Zinc-binding dehydrogenase 177 291 1.3E-9 T 14-09-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 ccrud_RS10215 b12ccca22d080c7f35579de36b84b8c8 328 SUPERFAMILY SSF51735 139 291 1.31E-22 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10215 b12ccca22d080c7f35579de36b84b8c8 328 Gene3D G3DSA:3.90.180.10 12 208 5.5E-46 T 14-09-2016 IPR011032 GroES-like ccrud_RS10215 b12ccca22d080c7f35579de36b84b8c8 328 PANTHER PTHR11695 15 312 6.6E-48 T 14-09-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 ccrud_RS03265 1280fb7d7cbe50a2945b93371d8dcc7e 118 Pfam PF11222 Protein of unknown function (DUF3017) 40 112 5.7E-24 T 14-09-2016 IPR021385 Protein of unknown function DUF3017 ccrud_RS13475 8a24bf84dd422b3823d18953dac30e28 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 310 325 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS13475 8a24bf84dd422b3823d18953dac30e28 439 PANTHER PTHR24064:SF168 3 439 2.7E-115 T 14-09-2016 ccrud_RS13475 8a24bf84dd422b3823d18953dac30e28 439 SUPERFAMILY SSF103473 7 437 4.05E-87 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13475 8a24bf84dd422b3823d18953dac30e28 439 PANTHER PTHR24064 3 439 2.7E-115 T 14-09-2016 ccrud_RS13475 8a24bf84dd422b3823d18953dac30e28 439 Gene3D G3DSA:1.20.1250.20 19 206 7.8E-33 T 14-09-2016 ccrud_RS13475 8a24bf84dd422b3823d18953dac30e28 439 Pfam PF00083 Sugar (and other) transporter 56 437 7.1E-53 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS13475 8a24bf84dd422b3823d18953dac30e28 439 Gene3D G3DSA:1.20.1250.20 253 434 1.1E-23 T 14-09-2016 ccrud_RS13475 8a24bf84dd422b3823d18953dac30e28 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 75 91 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS13475 8a24bf84dd422b3823d18953dac30e28 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 117 142 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS00485 7846082f693629b1c6d6a8cc335c283a 168 Pfam PF01047 MarR family 63 117 8.8E-10 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS00485 7846082f693629b1c6d6a8cc335c283a 168 SUPERFAMILY SSF46785 27 165 2.15E-21 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00485 7846082f693629b1c6d6a8cc335c283a 168 SMART SM00347 53 153 4.1E-14 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS00485 7846082f693629b1c6d6a8cc335c283a 168 Gene3D G3DSA:1.10.10.10 24 165 1.1E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04260 0d7264b4ef72c58db51e356b24f2e390 273 PIRSF PIRSF015582 1 273 1.2E-61 T 14-09-2016 IPR011206 Citrate lyase beta subunit-like ccrud_RS04260 0d7264b4ef72c58db51e356b24f2e390 273 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 10 215 5.0E-18 T 14-09-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 ccrud_RS04260 0d7264b4ef72c58db51e356b24f2e390 273 PANTHER PTHR32308 9 270 1.8E-49 T 14-09-2016 IPR011206 Citrate lyase beta subunit-like ccrud_RS04260 0d7264b4ef72c58db51e356b24f2e390 273 PANTHER PTHR32308:SF0 9 270 1.8E-49 T 14-09-2016 ccrud_RS04260 0d7264b4ef72c58db51e356b24f2e390 273 SUPERFAMILY SSF51621 6 227 8.37E-49 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS04260 0d7264b4ef72c58db51e356b24f2e390 273 Gene3D G3DSA:3.20.20.60 8 227 3.2E-52 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS06350 c8045d6b6a0da0a41346330257d9b2e9 213 PANTHER PTHR11017 25 184 3.6E-52 T 14-09-2016 ccrud_RS06350 c8045d6b6a0da0a41346330257d9b2e9 213 Gene3D G3DSA:3.80.10.10 49 172 4.7E-6 T 14-09-2016 IPR032675 Leucine-rich repeat domain, L domain-like ccrud_RS06350 c8045d6b6a0da0a41346330257d9b2e9 213 SUPERFAMILY SSF52058 50 194 9.52E-8 T 14-09-2016 IPR032675 Leucine-rich repeat domain, L domain-like ccrud_RS06350 c8045d6b6a0da0a41346330257d9b2e9 213 Pfam PF13306 Leucine rich repeats (6 copies) 25 141 3.3E-35 T 14-09-2016 IPR026906 Leucine rich repeat 5 ccrud_RS13825 890d04bf494adcb69dfca68fa337ca31 504 SUPERFAMILY SSF103473 28 452 6.41E-64 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13825 890d04bf494adcb69dfca68fa337ca31 504 PANTHER PTHR23508:SF17 9 474 3.1E-169 T 14-09-2016 ccrud_RS13825 890d04bf494adcb69dfca68fa337ca31 504 ProSitePatterns PS00217 Sugar transport proteins signature 2. 142 167 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS13825 890d04bf494adcb69dfca68fa337ca31 504 PANTHER PTHR23508 9 474 3.1E-169 T 14-09-2016 ccrud_RS13825 890d04bf494adcb69dfca68fa337ca31 504 Pfam PF00083 Sugar (and other) transporter 37 457 1.0E-33 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS13825 890d04bf494adcb69dfca68fa337ca31 504 Gene3D G3DSA:1.20.1250.20 269 456 3.7E-23 T 14-09-2016 ccrud_RS13825 890d04bf494adcb69dfca68fa337ca31 504 Gene3D G3DSA:1.20.1250.20 30 244 1.3E-24 T 14-09-2016 ccrud_RS13825 890d04bf494adcb69dfca68fa337ca31 504 ProSitePatterns PS00216 Sugar transport proteins signature 1. 326 342 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS07050 8495d5298b57eebe1a81c0ebeb5b8436 194 PANTHER PTHR10108 5 147 4.1E-16 T 14-09-2016 ccrud_RS07050 8495d5298b57eebe1a81c0ebeb5b8436 194 Pfam PF13649 Methyltransferase domain 49 138 2.4E-17 T 14-09-2016 ccrud_RS07050 8495d5298b57eebe1a81c0ebeb5b8436 194 PANTHER PTHR10108:SF721 5 147 4.1E-16 T 14-09-2016 ccrud_RS07050 8495d5298b57eebe1a81c0ebeb5b8436 194 SUPERFAMILY SSF53335 1 183 2.81E-31 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07050 8495d5298b57eebe1a81c0ebeb5b8436 194 Gene3D G3DSA:3.40.50.150 6 193 1.3E-37 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06320 1aa6160bb0361c1a6e0efb533f23fb56 705 Pfam PF13175 AAA ATPase domain 1 413 2.5E-36 T 14-09-2016 ccrud_RS06320 1aa6160bb0361c1a6e0efb533f23fb56 705 Gene3D G3DSA:3.40.50.300 278 416 1.8E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06320 1aa6160bb0361c1a6e0efb533f23fb56 705 Gene3D G3DSA:3.40.50.300 1 233 1.8E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06320 1aa6160bb0361c1a6e0efb533f23fb56 705 SUPERFAMILY SSF52540 1 151 3.12E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06320 1aa6160bb0361c1a6e0efb533f23fb56 705 SUPERFAMILY SSF52540 235 417 3.12E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05555 5ac4408a1d80d21dbd0686b5b59c9097 131 PANTHER PTHR22769:SF30 1 124 1.5E-32 T 14-09-2016 ccrud_RS05555 5ac4408a1d80d21dbd0686b5b59c9097 131 Pfam PF00293 NUDIX domain 8 123 7.4E-17 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS05555 5ac4408a1d80d21dbd0686b5b59c9097 131 Gene3D G3DSA:3.90.79.10 3 124 1.3E-30 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS05555 5ac4408a1d80d21dbd0686b5b59c9097 131 SUPERFAMILY SSF55811 2 127 6.77E-33 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS05555 5ac4408a1d80d21dbd0686b5b59c9097 131 PRINTS PR00502 NUDIX hydrolase family signature 47 62 3.1E-6 T 14-09-2016 IPR020476 NUDIX hydrolase ccrud_RS05555 5ac4408a1d80d21dbd0686b5b59c9097 131 PRINTS PR00502 NUDIX hydrolase family signature 33 47 3.1E-6 T 14-09-2016 IPR020476 NUDIX hydrolase ccrud_RS05555 5ac4408a1d80d21dbd0686b5b59c9097 131 PANTHER PTHR22769 1 124 1.5E-32 T 14-09-2016 ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 PANTHER PTHR30146 4 321 1.6E-77 T 14-09-2016 ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 ProSitePatterns PS00356 LacI-type HTH domain signature. 7 25 - T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 Gene3D G3DSA:3.40.50.2300 162 321 1.1E-35 T 14-09-2016 ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 SMART SM00354 4 74 1.1E-31 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 Pfam PF13377 Periplasmic binding protein-like domain 173 321 2.4E-23 T 14-09-2016 ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 51 5.8E-19 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 Gene3D G3DSA:3.40.50.2300 64 161 3.7E-18 T 14-09-2016 ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 SUPERFAMILY SSF53822 61 309 2.57E-43 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 SUPERFAMILY SSF47413 5 62 9.21E-18 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS08905 4dddf0875c4c1ad4be76ffafdce85051 325 Gene3D G3DSA:1.10.260.40 6 63 7.4E-24 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 Pfam PF00571 CBS domain 99 140 1.9E-5 T 14-09-2016 IPR000644 CBS domain ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 Pfam PF00571 CBS domain 149 202 4.6E-6 T 14-09-2016 IPR000644 CBS domain ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 PIRSF PIRSF000130 2 476 2.1E-147 T 14-09-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 PANTHER PTHR11911:SF80 297 473 2.5E-227 T 14-09-2016 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 Gene3D G3DSA:3.20.20.70 8 473 1.3E-136 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 SMART SM01240 11 474 1.3E-184 T 14-09-2016 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 SUPERFAMILY SSF54631 93 203 7.71E-21 T 14-09-2016 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 PANTHER PTHR11911:SF80 11 279 2.5E-227 T 14-09-2016 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 SUPERFAMILY SSF51412 202 473 3.92E-91 T 14-09-2016 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 SUPERFAMILY SSF51412 11 93 3.92E-91 T 14-09-2016 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 13 473 5.1E-103 T 14-09-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 TIGRFAM TIGR01303 IMP_DH_rel_1: IMP dehydrogenase family protein 2 476 1.0E-283 T 14-09-2016 IPR005991 IMP dehydrogenase-related 1 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 SMART SM00116 156 204 0.48 T 14-09-2016 IPR000644 CBS domain ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 SMART SM00116 98 145 0.008 T 14-09-2016 IPR000644 CBS domain ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 PANTHER PTHR11911 297 473 2.5E-227 T 14-09-2016 ccrud_RS12055 50abed0e6b9c52c5501bc1c25d6ba341 477 PANTHER PTHR11911 11 279 2.5E-227 T 14-09-2016 ccrud_RS08995 688ed17b8399585e63aabfbce494831d 438 PANTHER PTHR11730 186 431 2.0E-141 T 14-09-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 ccrud_RS08995 688ed17b8399585e63aabfbce494831d 438 ProSitePatterns PS01219 Ammonium transporters signature. 189 214 - T 14-09-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 ccrud_RS08995 688ed17b8399585e63aabfbce494831d 438 Gene3D G3DSA:1.10.3430.10 10 411 1.4E-118 T 14-09-2016 IPR029020 Ammonium/urea transporter ccrud_RS08995 688ed17b8399585e63aabfbce494831d 438 Pfam PF00909 Ammonium Transporter Family 14 430 1.7E-111 T 14-09-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 ccrud_RS08995 688ed17b8399585e63aabfbce494831d 438 PANTHER PTHR11730:SF17 186 431 2.0E-141 T 14-09-2016 ccrud_RS08995 688ed17b8399585e63aabfbce494831d 438 TIGRFAM TIGR00836 amt: ammonium transporter 12 430 1.9E-121 T 14-09-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 ccrud_RS08995 688ed17b8399585e63aabfbce494831d 438 PANTHER PTHR11730:SF17 10 167 2.0E-141 T 14-09-2016 ccrud_RS08995 688ed17b8399585e63aabfbce494831d 438 SUPERFAMILY SSF111352 10 411 2.09E-106 T 14-09-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 ccrud_RS08995 688ed17b8399585e63aabfbce494831d 438 PANTHER PTHR11730 10 167 2.0E-141 T 14-09-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 PANTHER PTHR10357 6 305 8.1E-92 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 PANTHER PTHR10357 484 553 8.1E-92 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 SUPERFAMILY SSF51445 83 501 1.68E-99 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 PIRSF PIRSF006337 1 572 3.2E-214 T 14-09-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 SMART SM00642 104 455 1.9E-9 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 PANTHER PTHR10357:SF110 484 553 8.1E-92 T 14-09-2016 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 Gene3D G3DSA:3.20.20.80 100 430 3.5E-75 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 Gene3D G3DSA:3.20.20.80 473 501 3.5E-75 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 6 542 7.9E-210 T 14-09-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 PANTHER PTHR10357:SF110 6 305 8.1E-92 T 14-09-2016 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 PANTHER PTHR10357:SF110 326 466 8.1E-92 T 14-09-2016 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 Pfam PF00128 Alpha amylase, catalytic domain 114 197 9.3E-17 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 Pfam PF00128 Alpha amylase, catalytic domain 221 304 1.1E-4 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 PANTHER PTHR10357 326 466 8.1E-92 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 Gene3D G3DSA:2.60.40.10 6 80 3.6E-20 T 14-09-2016 IPR013783 Immunoglobulin-like fold ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 Pfam PF11941 Domain of unknown function (DUF3459) 492 570 9.8E-7 T 14-09-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) ccrud_RS09300 b9e0710a1c2b6700e5292bdbfd641739 572 SUPERFAMILY SSF81296 6 80 2.57E-12 T 14-09-2016 IPR014756 Immunoglobulin E-set ccrud_RS13185 b508b6dbc3fcc734a2ebdc601169a5d7 371 Pfam PF13845 Septum formation 86 310 6.6E-77 T 14-09-2016 IPR026004 Septum formation-related domain ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 Pfam PF00005 ABC transporter 21 189 1.1E-23 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 Pfam PF00005 ABC transporter 369 497 1.7E-18 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 PANTHER PTHR19211:SF46 316 546 1.2E-187 T 14-09-2016 ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 PANTHER PTHR19211:SF46 1 295 1.2E-187 T 14-09-2016 ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 SMART SM00382 29 234 3.1E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 SMART SM00382 376 543 2.1E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 PANTHER PTHR19211 1 295 1.2E-187 T 14-09-2016 ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 ProSitePatterns PS00211 ABC transporters family signature. 161 175 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 Gene3D G3DSA:3.40.50.300 6 104 1.1E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 Gene3D G3DSA:3.40.50.300 138 282 1.1E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 PANTHER PTHR19211 316 546 1.2E-187 T 14-09-2016 ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 SUPERFAMILY SSF52540 5 250 5.77E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 SUPERFAMILY SSF52540 342 545 1.19E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05115 2c93a69f0bad66853bf9132329776390 547 Gene3D G3DSA:3.40.50.300 359 542 9.6E-33 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07335 41ba5ddd4f7a4303767ef440230ff654 362 PIRSF PIRSF005508 1 355 1.8E-136 T 14-09-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 ccrud_RS07335 41ba5ddd4f7a4303767ef440230ff654 362 TIGRFAM TIGR00832 acr3: arsenical-resistance protein 12 340 1.2E-123 T 14-09-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 ccrud_RS07335 41ba5ddd4f7a4303767ef440230ff654 362 Pfam PF01758 Sodium Bile acid symporter family 58 253 3.0E-60 T 14-09-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 ccrud_RS07335 41ba5ddd4f7a4303767ef440230ff654 362 PANTHER PTHR10361 11 350 1.8E-145 T 14-09-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 ccrud_RS07335 41ba5ddd4f7a4303767ef440230ff654 362 PANTHER PTHR10361:SF31 11 350 1.8E-145 T 14-09-2016 IPR004706 Arsenical-resistance protein Acr3 GO:0015103|GO:0015297|GO:0016021 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Gene3D G3DSA:3.90.199.10 38 215 1.7E-78 T 14-09-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 SUPERFAMILY SSF101904 506 822 7.98E-102 T 14-09-2016 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 SMART SM00434 15 472 7.7E-266 T 14-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Gene3D G3DSA:2.120.10.90 503 812 5.2E-118 T 14-09-2016 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 SUPERFAMILY SSF56719 9 496 4.58E-168 T 14-09-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 479 1.2E-144 T 14-09-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 4 817 27.477 T 14-09-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 PANTHER PTHR10169:SF48 10 784 0.0 T 14-09-2016 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 PANTHER PTHR10169 10 784 0.0 T 14-09-2016 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 12 813 0.0 T 14-09-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 513 557 4.6E-12 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 618 661 2.2E-8 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 718 764 2.5E-11 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 665 713 3.2E-12 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 561 595 7.7E-10 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 768 811 1.6E-10 T 14-09-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Gene3D G3DSA:1.10.268.10 371 470 2.6E-32 T 14-09-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 ccrud_RS00065 3c68d610836c6caec8d578f024c4bfd5 850 Gene3D G3DSA:3.30.1360.40 244 340 1.5E-32 T 14-09-2016 IPR024946 Arginine repressor C-terminal-like domain ccrud_RS06730 71be609024740c108e5a5e806a81a6fa 521 Pfam PF13768 von Willebrand factor type A domain 338 501 8.4E-10 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS06730 71be609024740c108e5a5e806a81a6fa 521 PANTHER PTHR10579 339 517 4.4E-17 T 14-09-2016 ccrud_RS06730 71be609024740c108e5a5e806a81a6fa 521 Pfam PF13531 Bacterial extracellular solute-binding protein 38 277 2.4E-15 T 14-09-2016 ccrud_RS06730 71be609024740c108e5a5e806a81a6fa 521 Gene3D G3DSA:3.40.50.410 337 517 1.9E-13 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS06730 71be609024740c108e5a5e806a81a6fa 521 SMART SM00327 334 518 5.3E-10 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS06730 71be609024740c108e5a5e806a81a6fa 521 SUPERFAMILY SSF53300 337 505 8.46E-21 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS06730 71be609024740c108e5a5e806a81a6fa 521 SUPERFAMILY SSF53850 37 298 2.44E-11 T 14-09-2016 ccrud_RS12300 7234d8f8c176b58b293cf83107bb6576 926 Gene3D G3DSA:3.40.50.410 64 241 1.4E-7 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS12300 7234d8f8c176b58b293cf83107bb6576 926 SUPERFAMILY SSF53300 64 279 2.45E-9 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS09580 29c833923be7e8962e738bcd72cbab63 245 SUPERFAMILY SSF69593 5 232 8.63E-46 T 14-09-2016 ccrud_RS09580 29c833923be7e8962e738bcd72cbab63 245 PANTHER PTHR10434 1 232 1.2E-64 T 14-09-2016 ccrud_RS09580 29c833923be7e8962e738bcd72cbab63 245 Gene3D G3DSA:3.40.1130.10 4 210 1.1E-29 T 14-09-2016 ccrud_RS09580 29c833923be7e8962e738bcd72cbab63 245 SMART SM00563 38 157 3.5E-33 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 ccrud_RS09580 29c833923be7e8962e738bcd72cbab63 245 Pfam PF01553 Acyltransferase 24 154 2.2E-25 T 14-09-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 ccrud_RS09580 29c833923be7e8962e738bcd72cbab63 245 PANTHER PTHR10434:SF21 1 232 1.2E-64 T 14-09-2016 ccrud_RS05180 3344d10ee18e7560487abc0947068d3f 114 PANTHER PTHR35145 3 109 1.2E-28 T 14-09-2016 ccrud_RS05180 3344d10ee18e7560487abc0947068d3f 114 PANTHER PTHR35145:SF2 3 109 1.2E-28 T 14-09-2016 ccrud_RS05180 3344d10ee18e7560487abc0947068d3f 114 Pfam PF04237 YjbR 13 103 1.2E-21 T 14-09-2016 IPR007351 Uncharacterised protein YjbR ccrud_RS05180 3344d10ee18e7560487abc0947068d3f 114 SUPERFAMILY SSF142906 8 113 1.83E-31 T 14-09-2016 ccrud_RS10700 5e31d6305144501ab428b46ddce2bb15 285 TIGRFAM TIGR02438 catachol_actin: catechol 1,2-dioxygenase 5 284 6.5E-151 T 14-09-2016 IPR012800 Catechol 1,2-dioxygenase, actinobacteria KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1 ccrud_RS10700 5e31d6305144501ab428b46ddce2bb15 285 PANTHER PTHR33711 5 263 1.1E-58 T 14-09-2016 ccrud_RS10700 5e31d6305144501ab428b46ddce2bb15 285 Pfam PF04444 Catechol dioxygenase N terminus 35 98 2.3E-12 T 14-09-2016 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 ccrud_RS10700 5e31d6305144501ab428b46ddce2bb15 285 Pfam PF00775 Dioxygenase 107 282 8.5E-61 T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 ccrud_RS10700 5e31d6305144501ab428b46ddce2bb15 285 Gene3D G3DSA:2.60.130.10 26 283 6.1E-72 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS10700 5e31d6305144501ab428b46ddce2bb15 285 PANTHER PTHR33711:SF4 5 263 1.1E-58 T 14-09-2016 ccrud_RS10700 5e31d6305144501ab428b46ddce2bb15 285 SUPERFAMILY SSF49482 26 282 3.01E-75 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS10700 5e31d6305144501ab428b46ddce2bb15 285 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 139 167 - T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 SUPERFAMILY SSF52821 160 274 5.5E-26 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 SUPERFAMILY SSF52821 2 135 1.83E-30 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 PANTHER PTHR11364 1 274 4.8E-56 T 14-09-2016 ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 SMART SM00450 149 270 5.8E-12 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 SMART SM00450 6 131 2.6E-11 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 PANTHER PTHR11364:SF0 1 274 4.8E-56 T 14-09-2016 ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 Gene3D G3DSA:3.40.250.10 155 274 8.1E-30 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 Pfam PF00581 Rhodanese-like domain 38 127 1.1E-12 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 Pfam PF00581 Rhodanese-like domain 162 266 3.6E-12 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS12520 9dd8f28388e5789e6b72899e09817510 274 Gene3D G3DSA:3.40.250.10 1 137 3.1E-32 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS06925 582734cd18c479e2beb53d087547ef3c 260 Gene3D G3DSA:3.40.50.150 31 233 1.5E-20 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06925 582734cd18c479e2beb53d087547ef3c 260 PANTHER PTHR10108:SF730 33 159 1.5E-15 T 14-09-2016 ccrud_RS06925 582734cd18c479e2beb53d087547ef3c 260 PANTHER PTHR10108 226 257 1.5E-15 T 14-09-2016 ccrud_RS06925 582734cd18c479e2beb53d087547ef3c 260 Pfam PF08241 Methyltransferase domain 62 149 5.1E-13 T 14-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 ccrud_RS06925 582734cd18c479e2beb53d087547ef3c 260 SUPERFAMILY SSF53335 30 220 8.59E-23 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06925 582734cd18c479e2beb53d087547ef3c 260 PANTHER PTHR10108:SF730 226 257 1.5E-15 T 14-09-2016 ccrud_RS06925 582734cd18c479e2beb53d087547ef3c 260 PANTHER PTHR10108 33 159 1.5E-15 T 14-09-2016 ccrud_RS02240 c8acb70c70ba8f649fdad546d27e37bd 141 Pfam PF12713 Domain of unknown function (DUF3806) 36 126 3.0E-21 T 14-09-2016 IPR024266 Domain of unknown function DUF3806 ccrud_RS05100 0a15b4c1e3aa421af1c8c6c1ea181d02 215 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 13 202 4.6E-48 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS05100 0a15b4c1e3aa421af1c8c6c1ea181d02 215 SMART SM00855 12 164 1.4E-12 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS05100 0a15b4c1e3aa421af1c8c6c1ea181d02 215 PANTHER PTHR23029:SF35 11 214 6.5E-53 T 14-09-2016 ccrud_RS05100 0a15b4c1e3aa421af1c8c6c1ea181d02 215 Gene3D G3DSA:3.40.50.1240 5 202 1.4E-43 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS05100 0a15b4c1e3aa421af1c8c6c1ea181d02 215 SUPERFAMILY SSF53254 11 202 9.03E-42 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS05100 0a15b4c1e3aa421af1c8c6c1ea181d02 215 PANTHER PTHR23029 11 214 6.5E-53 T 14-09-2016 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 SUPERFAMILY SSF55874 211 382 1.44E-46 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 SUPERFAMILY SSF47384 147 220 1.92E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 PANTHER PTHR24423 53 377 1.3E-80 T 14-09-2016 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 268 377 3.9E-23 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 SMART SM00387 267 379 2.7E-37 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 Gene3D G3DSA:1.10.287.130 152 208 1.6E-14 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 Gene3D G3DSA:3.30.565.10 209 381 1.8E-46 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 PRINTS PR00344 Bacterial sensor protein C-terminal signature 304 318 4.3E-21 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 332 4.3E-21 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 376 4.3E-21 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 PRINTS PR00344 Bacterial sensor protein C-terminal signature 339 357 4.3E-21 T 14-09-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 Pfam PF00512 His Kinase A (phospho-acceptor) domain 156 221 2.3E-15 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 PANTHER PTHR24423:SF394 53 377 1.3E-80 T 14-09-2016 ccrud_RS02120 1fb56aafa41cb1a64e71cddbfdbdc1f3 414 SMART SM00388 156 222 8.3E-18 T 14-09-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 ccrud_RS13020 f20658008356c5d60f448e9ae066c57b 254 SUPERFAMILY SSF53335 25 175 1.24E-22 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS13020 f20658008356c5d60f448e9ae066c57b 254 Pfam PF08241 Methyltransferase domain 63 151 3.7E-14 T 14-09-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 ccrud_RS13020 f20658008356c5d60f448e9ae066c57b 254 PANTHER PTHR10108 43 182 5.0E-15 T 14-09-2016 ccrud_RS13020 f20658008356c5d60f448e9ae066c57b 254 Gene3D G3DSA:3.40.50.150 50 176 1.6E-21 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS08620 a24fc1d711013a288eab07eb719205cb 149 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 115 2.3E-20 T 14-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 ccrud_RS08620 a24fc1d711013a288eab07eb719205cb 149 Gene3D G3DSA:3.30.300.20 3 121 1.7E-33 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta ccrud_RS08620 a24fc1d711013a288eab07eb719205cb 149 PANTHER PTHR33515 1 149 1.6E-35 T 14-09-2016 ccrud_RS08620 a24fc1d711013a288eab07eb719205cb 149 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 100 1.0E-34 T 14-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 ccrud_RS08620 a24fc1d711013a288eab07eb719205cb 149 ProSitePatterns PS01319 Ribosome-binding factor A signature. 79 100 - T 14-09-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 ccrud_RS08620 a24fc1d711013a288eab07eb719205cb 149 SUPERFAMILY SSF89919 1 116 1.96E-27 T 14-09-2016 IPR023799 Ribosome-binding factor A domain ccrud_RS08620 a24fc1d711013a288eab07eb719205cb 149 Pfam PF02033 Ribosome-binding factor A 6 113 5.0E-24 T 14-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 ccrud_RS08620 a24fc1d711013a288eab07eb719205cb 149 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 2 120 18.443 T 14-09-2016 IPR000238 Ribosome-binding factor A GO:0006364 ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 4.2E-29 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 4.2E-29 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 4.2E-29 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 220 240 4.2E-29 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 4.2E-29 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 4.2E-29 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PANTHER PTHR24322 155 187 5.4E-50 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PANTHER PTHR24322 15 139 5.4E-50 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 SUPERFAMILY SSF51735 13 255 5.4E-63 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 192 0.0052 T 14-09-2016 ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.8E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.8E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.8E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 Pfam PF00106 short chain dehydrogenase 12 196 1.4E-47 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS10825 2482f8ca83c0c34d256ba0850a063bcc 256 Gene3D G3DSA:3.40.50.720 4 256 1.6E-67 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS10865 f962f46603cb70f688bc25991ee6340e 226 Gene3D G3DSA:3.40.50.1820 35 225 6.3E-31 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS10865 f962f46603cb70f688bc25991ee6340e 226 PANTHER PTHR10992 118 226 4.7E-18 T 14-09-2016 ccrud_RS10865 f962f46603cb70f688bc25991ee6340e 226 PANTHER PTHR10992 41 95 4.7E-18 T 14-09-2016 ccrud_RS10865 f962f46603cb70f688bc25991ee6340e 226 Pfam PF12146 Serine aminopeptidase, S33 51 211 1.4E-7 T 14-09-2016 IPR022742 Serine aminopeptidase, S33 ccrud_RS10865 f962f46603cb70f688bc25991ee6340e 226 SUPERFAMILY SSF53474 4 222 3.01E-31 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00635 3e03d16053004abd3271851fff33d3e2 269 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 12 269 3.0E-86 T 14-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 ccrud_RS00635 3e03d16053004abd3271851fff33d3e2 269 SUPERFAMILY SSF51621 9 266 3.73E-96 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS00635 3e03d16053004abd3271851fff33d3e2 269 Gene3D G3DSA:3.20.20.60 7 269 1.7E-105 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS00635 3e03d16053004abd3271851fff33d3e2 269 Pfam PF02548 Ketopantoate hydroxymethyltransferase 9 264 6.8E-104 T 14-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 ccrud_RS00635 3e03d16053004abd3271851fff33d3e2 269 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 9 269 40.286 T 14-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 ccrud_RS00635 3e03d16053004abd3271851fff33d3e2 269 PANTHER PTHR20881 6 269 1.6E-127 T 14-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 ccrud_RS00635 3e03d16053004abd3271851fff33d3e2 269 PIRSF PIRSF000388 2 269 1.4E-102 T 14-09-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 SMART SM00895 97 221 3.8E-13 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 SMART SM00345 9 72 6.3E-14 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 Gene3D G3DSA:1.20.120.530 96 228 3.9E-17 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.9E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.9E-9 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 Gene3D G3DSA:1.10.10.10 4 65 3.8E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 SUPERFAMILY SSF46785 4 66 1.65E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 PANTHER PTHR11751 95 113 1.1E-19 T 14-09-2016 ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 PANTHER PTHR11751 7 79 1.1E-19 T 14-09-2016 ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 SUPERFAMILY SSF48008 96 224 2.07E-18 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 65 1.5E-15 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS13290 f5d82a78d531628b18bb2d2b45af3d1d 232 Pfam PF07729 FCD domain 97 220 6.0E-15 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 SUPERFAMILY SSF54373 258 331 5.1E-23 T 14-09-2016 ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 Pfam PF13450 NAD(P)-binding Rossmann-like domain 11 80 2.2E-17 T 14-09-2016 ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 TIGRFAM TIGR00031 UDP-GALP_mutase: UDP-galactopyranose mutase 7 385 1.5E-103 T 14-09-2016 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 PANTHER PTHR21197 3 401 1.0E-100 T 14-09-2016 IPR004379 UDP-galactopyranose mutase GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 Gene3D G3DSA:3.40.50.720 190 267 2.5E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 Gene3D G3DSA:3.40.50.720 339 388 2.5E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 Gene3D G3DSA:3.40.50.720 2 86 2.5E-46 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 SUPERFAMILY SSF51971 352 380 1.65E-42 T 14-09-2016 ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 SUPERFAMILY SSF51971 5 277 1.65E-42 T 14-09-2016 ccrud_RS13150 7ad3575324dfbea09a438184db593fa9 401 Pfam PF03275 UDP-galactopyranose mutase 155 367 6.5E-78 T 14-09-2016 IPR015899 UDP-galactopyranose mutase, C-terminal GO:0008767 KEGG: 00052+5.4.99.9|KEGG: 00520+5.4.99.9|MetaCyc: PWY-6397|MetaCyc: PWY-7328|MetaCyc: PWY-7622 ccrud_RS10910 ccbfbca01cd448d679bc85bd04245f9b 313 SUPERFAMILY SSF161098 95 291 1.83E-18 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10910 ccbfbca01cd448d679bc85bd04245f9b 313 PANTHER PTHR30465:SF0 6 309 2.2E-80 T 14-09-2016 ccrud_RS10910 ccbfbca01cd448d679bc85bd04245f9b 313 PANTHER PTHR30465 6 309 2.2E-80 T 14-09-2016 ccrud_RS10910 ccbfbca01cd448d679bc85bd04245f9b 313 Gene3D G3DSA:1.10.3720.10 93 300 2.1E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10910 ccbfbca01cd448d679bc85bd04245f9b 313 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 309 7.9E-30 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS02225 045245c8763d12b2c5cf90190a4e858f 548 Gene3D G3DSA:1.10.3720.10 58 265 1.4E-37 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS02225 045245c8763d12b2c5cf90190a4e858f 548 SUPERFAMILY SSF161098 298 545 2.52E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS02225 045245c8763d12b2c5cf90190a4e858f 548 Gene3D G3DSA:1.10.3720.10 300 540 6.1E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS02225 045245c8763d12b2c5cf90190a4e858f 548 SUPERFAMILY SSF161098 23 264 1.03E-41 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS02225 045245c8763d12b2c5cf90190a4e858f 548 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 265 2.2E-13 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS02225 045245c8763d12b2c5cf90190a4e858f 548 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 371 541 3.7E-8 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS02225 045245c8763d12b2c5cf90190a4e858f 548 PANTHER PTHR30183 5 543 7.4E-36 T 14-09-2016 ccrud_RS05545 f426338a7277b51dc777ada6acdaae43 511 PANTHER PTHR30365:SF0 1 491 5.8E-175 T 14-09-2016 ccrud_RS05545 f426338a7277b51dc777ada6acdaae43 511 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 6 471 3.8E-156 T 14-09-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 ccrud_RS05545 f426338a7277b51dc777ada6acdaae43 511 PANTHER PTHR30365 1 491 5.8E-175 T 14-09-2016 ccrud_RS05545 f426338a7277b51dc777ada6acdaae43 511 PIRSF PIRSF006446 1 494 2.1E-117 T 14-09-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 ccrud_RS12980 2bf26ce5ce2d8ebebc9e2f76245e2473 169 PRINTS PR01438 Universal stress protein signature 123 145 2.8E-12 T 14-09-2016 IPR006015 Universal stress protein A ccrud_RS12980 2bf26ce5ce2d8ebebc9e2f76245e2473 169 PRINTS PR01438 Universal stress protein signature 105 117 2.8E-12 T 14-09-2016 IPR006015 Universal stress protein A ccrud_RS12980 2bf26ce5ce2d8ebebc9e2f76245e2473 169 PRINTS PR01438 Universal stress protein signature 3 21 2.8E-12 T 14-09-2016 IPR006015 Universal stress protein A ccrud_RS12980 2bf26ce5ce2d8ebebc9e2f76245e2473 169 Gene3D G3DSA:3.40.50.620 4 146 7.8E-28 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS12980 2bf26ce5ce2d8ebebc9e2f76245e2473 169 Pfam PF00582 Universal stress protein family 4 145 5.2E-20 T 14-09-2016 IPR006016 UspA GO:0006950 ccrud_RS12980 2bf26ce5ce2d8ebebc9e2f76245e2473 169 SUPERFAMILY SSF52402 4 146 5.36E-27 T 14-09-2016 ccrud_RS12980 2bf26ce5ce2d8ebebc9e2f76245e2473 169 PANTHER PTHR31964 1 165 1.7E-23 T 14-09-2016 ccrud_RS10350 e468f255db7f6efa5e52db187dc0b06b 184 SUPERFAMILY SSF49319 63 181 2.18E-18 T 14-09-2016 IPR027273 Neocarzinostatin-like ccrud_RS10350 e468f255db7f6efa5e52db187dc0b06b 184 Gene3D G3DSA:2.60.40.230 64 182 2.2E-17 T 14-09-2016 IPR027273 Neocarzinostatin-like ccrud_RS07175 2fbf669a2be47c95b02ccd90e20cc05c 271 SUPERFAMILY SSF53448 11 223 1.22E-40 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS07175 2fbf669a2be47c95b02ccd90e20cc05c 271 PANTHER PTHR10859 12 222 3.5E-65 T 14-09-2016 ccrud_RS07175 2fbf669a2be47c95b02ccd90e20cc05c 271 Gene3D G3DSA:3.90.550.10 12 225 1.3E-22 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS07175 2fbf669a2be47c95b02ccd90e20cc05c 271 Pfam PF00535 Glycosyl transferase family 2 12 176 9.3E-30 T 14-09-2016 IPR001173 Glycosyltransferase 2-like ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 Pfam PF02581 Thiamine monophosphate synthase/TENI 6 197 4.5E-45 T 14-09-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 SUPERFAMILY SSF48613 525 731 7.36E-49 T 14-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 223 478 2.1E-76 T 14-09-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 Gene3D G3DSA:1.20.910.10 527 734 3.5E-52 T 14-09-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 3 215 21.885 T 14-09-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 5 210 6.1E-56 T 14-09-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 PANTHER PTHR20858 207 484 7.9E-119 T 14-09-2016 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 PANTHER PTHR20858 515 698 7.9E-119 T 14-09-2016 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 Pfam PF03070 TENA/THI-4/PQQC family 540 733 1.4E-23 T 14-09-2016 IPR004305 Thiaminase-2/PQQC ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 Gene3D G3DSA:3.40.1190.20 220 479 2.3E-91 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 Pfam PF08543 Phosphomethylpyrimidine kinase 230 477 5.1E-79 T 14-09-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 SUPERFAMILY SSF53613 220 481 6.24E-69 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 SUPERFAMILY SSF51391 2 215 6.54E-48 T 14-09-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 ccrud_RS07095 9b91342702eea5c9c9472efba52c8106 737 Gene3D G3DSA:3.20.20.70 2 216 5.4E-56 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS09430 e921bb8dd0a7ae16ca27eda105620c8d 234 PIRSF PIRSF004848 1 234 1.6E-57 T 14-09-2016 IPR011078 Uncharacterised protein family UPF0001 ccrud_RS09430 e921bb8dd0a7ae16ca27eda105620c8d 234 PANTHER PTHR10146:SF0 3 232 3.5E-60 T 14-09-2016 ccrud_RS09430 e921bb8dd0a7ae16ca27eda105620c8d 234 Pfam PF01168 Alanine racemase, N-terminal domain 11 229 1.1E-16 T 14-09-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 ccrud_RS09430 e921bb8dd0a7ae16ca27eda105620c8d 234 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 77 91 - T 14-09-2016 IPR011078 Uncharacterised protein family UPF0001 ccrud_RS09430 e921bb8dd0a7ae16ca27eda105620c8d 234 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 8 231 4.8E-41 T 14-09-2016 IPR011078 Uncharacterised protein family UPF0001 ccrud_RS09430 e921bb8dd0a7ae16ca27eda105620c8d 234 SUPERFAMILY SSF51419 4 229 4.3E-59 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS09430 e921bb8dd0a7ae16ca27eda105620c8d 234 Gene3D G3DSA:3.20.20.10 2 232 1.5E-69 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS09430 e921bb8dd0a7ae16ca27eda105620c8d 234 PANTHER PTHR10146 3 232 3.5E-60 T 14-09-2016 IPR011078 Uncharacterised protein family UPF0001 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 PANTHER PTHR11632 462 537 5.6E-127 T 14-09-2016 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 PANTHER PTHR11632 4 137 5.6E-127 T 14-09-2016 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 PANTHER PTHR11632 191 446 5.6E-127 T 14-09-2016 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 PANTHER PTHR11632:SF59 462 537 5.6E-127 T 14-09-2016 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 PANTHER PTHR11632:SF59 191 446 5.6E-127 T 14-09-2016 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 PANTHER PTHR11632:SF59 4 137 5.6E-127 T 14-09-2016 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 Pfam PF00890 FAD binding domain 14 522 4.4E-78 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 Gene3D G3DSA:3.50.50.60 8 146 2.9E-60 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 Gene3D G3DSA:3.50.50.60 195 296 2.9E-60 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 Gene3D G3DSA:3.50.50.60 477 538 2.9E-60 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 Gene3D G3DSA:3.90.700.10 317 471 7.3E-34 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 SUPERFAMILY SSF56425 317 481 2.79E-34 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 14 36 1.8E-6 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 212 228 1.8E-6 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 SUPERFAMILY SSF51905 11 65 6.8E-42 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 SUPERFAMILY SSF51905 121 293 6.8E-42 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00210 4e7a2513b6018936861b0693d5522d99 549 SUPERFAMILY SSF51905 475 539 6.8E-42 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS09240 4959fa18e990850f1298e92fdf42db2f 326 Gene3D G3DSA:3.40.50.1980 66 178 8.1E-24 T 14-09-2016 ccrud_RS09240 4959fa18e990850f1298e92fdf42db2f 326 Pfam PF01497 Periplasmic binding protein 70 294 6.4E-36 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 ccrud_RS09240 4959fa18e990850f1298e92fdf42db2f 326 PANTHER PTHR30535 61 315 4.1E-42 T 14-09-2016 ccrud_RS09240 4959fa18e990850f1298e92fdf42db2f 326 SUPERFAMILY SSF53807 60 313 1.57E-53 T 14-09-2016 ccrud_RS09240 4959fa18e990850f1298e92fdf42db2f 326 Gene3D G3DSA:3.40.50.1980 179 321 2.7E-24 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 Pfam PF13541 Subunit ChlI of Mg-chelatase 379 438 3.3E-7 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 Gene3D G3DSA:3.30.230.10 294 462 1.9E-29 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 Pfam PF13481 AAA domain 74 232 2.2E-15 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 SUPERFAMILY SSF52540 76 299 1.05E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 PANTHER PTHR32472 4 462 1.9E-173 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 SUPERFAMILY SSF54211 304 461 4.55E-33 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 PANTHER PTHR32472:SF10 4 462 1.9E-173 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 Gene3D G3DSA:3.40.50.300 72 287 8.2E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 SMART SM00382 95 254 1.5E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 PRINTS PR01874 DNA repair protein radA signature 184 208 5.5E-73 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 PRINTS PR01874 DNA repair protein radA signature 87 115 5.5E-73 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 PRINTS PR01874 DNA repair protein radA signature 11 35 5.5E-73 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 PRINTS PR01874 DNA repair protein radA signature 332 355 5.5E-73 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 PRINTS PR01874 DNA repair protein radA signature 223 251 5.5E-73 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 PRINTS PR01874 DNA repair protein radA signature 258 284 5.5E-73 T 14-09-2016 ccrud_RS12015 49deb60db0d2d79ae91b5a6b21ca5144 464 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 459 3.1E-157 T 14-09-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 ccrud_RS11190 0bead408b63b89ac5ce2ca5e413d3008 158 Pfam PF00578 AhpC/TSA family 10 135 2.2E-34 T 14-09-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 ccrud_RS11190 0bead408b63b89ac5ce2ca5e413d3008 158 PIRSF PIRSF000239 2 158 9.3E-20 T 14-09-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 ccrud_RS11190 0bead408b63b89ac5ce2ca5e413d3008 158 PANTHER PTHR10681 2 157 2.1E-45 T 14-09-2016 ccrud_RS11190 0bead408b63b89ac5ce2ca5e413d3008 158 SUPERFAMILY SSF52833 7 157 1.38E-44 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11190 0bead408b63b89ac5ce2ca5e413d3008 158 Gene3D G3DSA:3.40.30.10 3 157 7.0E-46 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS08200 f3d6879c4832c4d46356d007f58afd11 412 SUPERFAMILY SSF50249 6 63 1.14E-13 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08200 f3d6879c4832c4d46356d007f58afd11 412 Gene3D G3DSA:2.40.50.140 4 80 4.6E-25 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08200 f3d6879c4832c4d46356d007f58afd11 412 Gene3D G3DSA:3.40.50.150 215 409 8.4E-33 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS08200 f3d6879c4832c4d46356d007f58afd11 412 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 327 408 5.7E-8 T 14-09-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 ccrud_RS08200 f3d6879c4832c4d46356d007f58afd11 412 PANTHER PTHR11061 6 412 1.9E-57 T 14-09-2016 ccrud_RS08200 f3d6879c4832c4d46356d007f58afd11 412 Pfam PF01938 TRAM domain 10 62 2.3E-10 T 14-09-2016 IPR002792 TRAM domain ccrud_RS08200 f3d6879c4832c4d46356d007f58afd11 412 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 341 372 - T 14-09-2016 IPR030390 RNA methyltransferase TrmA, active site ccrud_RS08200 f3d6879c4832c4d46356d007f58afd11 412 PANTHER PTHR11061:SF30 6 412 1.9E-57 T 14-09-2016 ccrud_RS08200 f3d6879c4832c4d46356d007f58afd11 412 SUPERFAMILY SSF53335 72 410 2.03E-36 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07250 54d1ae54fd378c45669d973b32080b63 325 PANTHER PTHR34580:SF3 2 322 9.7E-25 T 14-09-2016 ccrud_RS07250 54d1ae54fd378c45669d973b32080b63 325 Pfam PF13280 WYL domain 156 319 9.7E-22 T 14-09-2016 IPR026881 WYL domain ccrud_RS07250 54d1ae54fd378c45669d973b32080b63 325 PANTHER PTHR34580 2 322 9.7E-25 T 14-09-2016 ccrud_RS04295 3e6bacf3fb1d7c0a1e3905b68890cc18 537 PANTHER PTHR11814 18 537 3.3E-111 T 14-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 ccrud_RS04295 3e6bacf3fb1d7c0a1e3905b68890cc18 537 SUPERFAMILY SSF52091 422 529 7.85E-15 T 14-09-2016 IPR002645 STAS domain ccrud_RS04295 3e6bacf3fb1d7c0a1e3905b68890cc18 537 Pfam PF00916 Sulfate permease family 20 377 4.3E-71 T 14-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 ccrud_RS04295 3e6bacf3fb1d7c0a1e3905b68890cc18 537 Gene3D G3DSA:3.30.750.24 424 512 2.8E-12 T 14-09-2016 IPR002645 STAS domain ccrud_RS04295 3e6bacf3fb1d7c0a1e3905b68890cc18 537 Pfam PF01740 STAS domain 424 520 5.7E-13 T 14-09-2016 IPR002645 STAS domain ccrud_RS05965 745580dcf9b81fce84aad0090f972673 335 SUPERFAMILY SSF51726 81 285 6.02E-11 T 14-09-2016 ccrud_RS10305 cfc2f54b247b26a7965a986c08a19a91 432 Pfam PF03600 Citrate transporter 17 376 1.8E-37 T 14-09-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 ccrud_RS10305 cfc2f54b247b26a7965a986c08a19a91 432 PANTHER PTHR10283:SF87 49 432 1.9E-120 T 14-09-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 ccrud_RS10305 cfc2f54b247b26a7965a986c08a19a91 432 TIGRFAM TIGR00784 citMHS: citrate transporter 2 432 3.1E-151 T 14-09-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 ccrud_RS10305 cfc2f54b247b26a7965a986c08a19a91 432 PANTHER PTHR10283 49 432 1.9E-120 T 14-09-2016 ccrud_RS06065 57ac3104f42a92d89f1ab3f8bd0644da 361 PANTHER PTHR11732:SF191 16 342 2.8E-164 T 14-09-2016 ccrud_RS06065 57ac3104f42a92d89f1ab3f8bd0644da 361 PANTHER PTHR11732 16 342 2.8E-164 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta ccrud_RS06065 57ac3104f42a92d89f1ab3f8bd0644da 361 Gene3D G3DSA:3.20.20.100 16 342 1.7E-81 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS06065 57ac3104f42a92d89f1ab3f8bd0644da 361 SUPERFAMILY SSF51430 16 343 1.96E-84 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS06065 57ac3104f42a92d89f1ab3f8bd0644da 361 Pfam PF00248 Aldo/keto reductase family 31 341 8.4E-67 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS02610 9a1458f32b9b30c2480f0a68ae2f6fcc 218 Pfam PF00573 Ribosomal protein L4/L1 family 19 205 2.9E-63 T 14-09-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 ccrud_RS02610 9a1458f32b9b30c2480f0a68ae2f6fcc 218 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 19 204 1.4E-69 T 14-09-2016 IPR013005 50S ribosomal protein uL4 ccrud_RS02610 9a1458f32b9b30c2480f0a68ae2f6fcc 218 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 11 210 32.79 T 14-09-2016 IPR013005 50S ribosomal protein uL4 ccrud_RS02610 9a1458f32b9b30c2480f0a68ae2f6fcc 218 SUPERFAMILY SSF52166 5 208 6.02E-72 T 14-09-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 ccrud_RS02610 9a1458f32b9b30c2480f0a68ae2f6fcc 218 Gene3D G3DSA:3.40.1370.10 60 208 1.8E-50 T 14-09-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 ccrud_RS02610 9a1458f32b9b30c2480f0a68ae2f6fcc 218 PANTHER PTHR10746 4 202 9.2E-77 T 14-09-2016 IPR013005 50S ribosomal protein uL4 ccrud_RS01200 3a1a44057f6698ddba14b4a191817215 159 SUPERFAMILY SSF53927 9 158 5.69E-49 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 ccrud_RS01200 3a1a44057f6698ddba14b4a191817215 159 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 62 100 - T 14-09-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 ccrud_RS01200 3a1a44057f6698ddba14b4a191817215 159 Gene3D G3DSA:3.40.140.10 8 157 4.1E-54 T 14-09-2016 ccrud_RS01200 3a1a44057f6698ddba14b4a191817215 159 PANTHER PTHR11079 11 159 1.1E-39 T 14-09-2016 ccrud_RS01200 3a1a44057f6698ddba14b4a191817215 159 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 17 159 47.049 T 14-09-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 ccrud_RS01200 3a1a44057f6698ddba14b4a191817215 159 Pfam PF14437 MafB19-like deaminase 14 158 2.1E-27 T 14-09-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 ccrud_RS03070 f520c6aafbd412d96ab6419506ad1bc0 126 ProDom PD032647 MB3446 ML0386 RV3412/MT3521 CGL0602 1 126 1.0E-64 T 14-09-2016 ccrud_RS11960 74d74bd1c4650865f37b2e3ee0b9c8bc 538 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 101 462 7.4E-69 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain ccrud_RS11960 74d74bd1c4650865f37b2e3ee0b9c8bc 538 SUPERFAMILY SSF53850 51 534 5.43E-93 T 14-09-2016 ccrud_RS11960 74d74bd1c4650865f37b2e3ee0b9c8bc 538 Gene3D G3DSA:3.40.190.10 210 312 1.9E-24 T 14-09-2016 ccrud_RS11960 74d74bd1c4650865f37b2e3ee0b9c8bc 538 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 5 27 9.9E-6 T 14-09-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal ccrud_RS11960 74d74bd1c4650865f37b2e3ee0b9c8bc 538 Gene3D G3DSA:3.90.76.10 70 209 9.4E-33 T 14-09-2016 ccrud_RS11960 74d74bd1c4650865f37b2e3ee0b9c8bc 538 PANTHER PTHR30290:SF9 2 516 1.4E-72 T 14-09-2016 ccrud_RS11960 74d74bd1c4650865f37b2e3ee0b9c8bc 538 PIRSF PIRSF002741 15 524 6.1E-61 T 14-09-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 ccrud_RS11960 74d74bd1c4650865f37b2e3ee0b9c8bc 538 Gene3D G3DSA:3.10.105.10 313 507 1.2E-28 T 14-09-2016 ccrud_RS11960 74d74bd1c4650865f37b2e3ee0b9c8bc 538 PANTHER PTHR30290 2 516 1.4E-72 T 14-09-2016 ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 PANTHER PTHR10458 1 168 7.4E-59 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 Gene3D G3DSA:3.90.45.10 5 166 1.1E-56 T 14-09-2016 IPR023635 Peptide deformylase ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 Hamap MF_00163 Peptide deformylase [def]. 2 164 27.707 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 PRINTS PR01576 Peptide deformylase signature 122 151 5.4E-34 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 PRINTS PR01576 Peptide deformylase signature 91 102 5.4E-34 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 PRINTS PR01576 Peptide deformylase signature 33 62 5.4E-34 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 PRINTS PR01576 Peptide deformylase signature 103 121 5.4E-34 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 Pfam PF01327 Polypeptide deformylase 4 154 7.8E-47 T 14-09-2016 IPR023635 Peptide deformylase ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 PIRSF PIRSF004749 1 164 1.2E-47 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 SUPERFAMILY SSF56420 1 159 6.41E-53 T 14-09-2016 IPR023635 Peptide deformylase ccrud_RS07740 8f3636bb017f896fc72e5e718b17cf41 168 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 8 155 4.9E-40 T 14-09-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 ccrud_RS02775 c81e4ad5645a0cb554804dae86fc6b79 61 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 3 57 2.4E-22 T 14-09-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 ccrud_RS02775 c81e4ad5645a0cb554804dae86fc6b79 61 Pfam PF00327 Ribosomal protein L30p/L7e 3 53 9.7E-20 T 14-09-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain ccrud_RS02775 c81e4ad5645a0cb554804dae86fc6b79 61 PIRSF PIRSF002211 1 59 4.9E-25 T 14-09-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 ccrud_RS02775 c81e4ad5645a0cb554804dae86fc6b79 61 Gene3D G3DSA:3.30.1390.20 3 58 9.3E-25 T 14-09-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain ccrud_RS02775 c81e4ad5645a0cb554804dae86fc6b79 61 PANTHER PTHR15892 3 59 4.4E-20 T 14-09-2016 ccrud_RS02775 c81e4ad5645a0cb554804dae86fc6b79 61 SUPERFAMILY SSF55129 3 58 5.49E-20 T 14-09-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain ccrud_RS02775 c81e4ad5645a0cb554804dae86fc6b79 61 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 2 57 19.341 T 14-09-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 ccrud_RS09445 20c9d6dcdd902e9c396c7aadef713a1e 222 PANTHER PTHR37820 6 206 1.6E-19 T 14-09-2016 ccrud_RS09445 20c9d6dcdd902e9c396c7aadef713a1e 222 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 1 222 16.642 T 14-09-2016 IPR026579 Cell division protein FtsQ GO:0000917 ccrud_RS09445 20c9d6dcdd902e9c396c7aadef713a1e 222 Pfam PF08478 POTRA domain, FtsQ-type 31 98 1.7E-16 T 14-09-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type ccrud_RS12590 79c030d04bfcbdec6e5841171895268d 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 262 269 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS12590 79c030d04bfcbdec6e5841171895268d 506 PANTHER PTHR11699:SF97 1 506 0.0 T 14-09-2016 ccrud_RS12590 79c030d04bfcbdec6e5841171895268d 506 Gene3D G3DSA:3.40.605.10 17 293 3.4E-100 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS12590 79c030d04bfcbdec6e5841171895268d 506 SUPERFAMILY SSF53720 14 498 4.19E-162 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS12590 79c030d04bfcbdec6e5841171895268d 506 Gene3D G3DSA:3.40.309.10 294 470 3.5E-58 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS12590 79c030d04bfcbdec6e5841171895268d 506 PANTHER PTHR11699 1 506 0.0 T 14-09-2016 ccrud_RS12590 79c030d04bfcbdec6e5841171895268d 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 14-09-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS12590 79c030d04bfcbdec6e5841171895268d 506 Pfam PF00171 Aldehyde dehydrogenase family 28 493 6.7E-165 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PANTHER PTHR11482:SF5 15 444 5.8E-135 T 14-09-2016 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 72 90 - T 14-09-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 21 444 1.3E-135 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 Gene3D G3DSA:2.40.37.10 295 444 5.7E-45 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 313 421 7.5E-15 T 14-09-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 243 259 - T 14-09-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 49 306 4.2E-75 T 14-09-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PRINTS PR01181 Diaminopimelate decarboxylase signature 90 107 3.5E-25 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PRINTS PR01181 Diaminopimelate decarboxylase signature 179 188 3.5E-25 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PRINTS PR01181 Diaminopimelate decarboxylase signature 329 347 3.5E-25 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PRINTS PR01181 Diaminopimelate decarboxylase signature 412 434 3.5E-25 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 Gene3D G3DSA:3.20.20.10 50 294 6.9E-84 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 SUPERFAMILY SSF50621 285 444 2.3E-44 T 14-09-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 402 415 1.4E-18 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 72 90 1.4E-18 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 207 220 1.4E-18 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 92 104 1.4E-18 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 296 315 1.4E-18 T 14-09-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 31 445 38.744 T 14-09-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 SUPERFAMILY SSF51419 42 308 8.77E-71 T 14-09-2016 IPR029066 PLP-binding barrel ccrud_RS05705 7da05f5dfa2131ebeb8ce0212dcca1a5 445 PANTHER PTHR11482 15 444 5.8E-135 T 14-09-2016 ccrud_RS00160 70e88cdaddd344416e183401c5705d84 474 PANTHER PTHR30627 1 471 5.0E-86 T 14-09-2016 ccrud_RS00160 70e88cdaddd344416e183401c5705d84 474 Gene3D G3DSA:3.40.710.10 144 471 4.5E-77 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS00160 70e88cdaddd344416e183401c5705d84 474 PANTHER PTHR30627:SF3 1 471 5.0E-86 T 14-09-2016 ccrud_RS00160 70e88cdaddd344416e183401c5705d84 474 SUPERFAMILY SSF56601 95 471 9.22E-76 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS00160 70e88cdaddd344416e183401c5705d84 474 Gene3D G3DSA:3.90.1310.10 71 143 7.3E-10 T 14-09-2016 ccrud_RS00160 70e88cdaddd344416e183401c5705d84 474 Pfam PF00905 Penicillin binding protein transpeptidase domain 157 468 5.6E-58 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 ccrud_RS11235 27bb8a40142c189ba73cd5be43b146ef 184 Pfam PF01551 Peptidase family M23 78 173 2.6E-32 T 14-09-2016 IPR016047 Peptidase M23 ccrud_RS11235 27bb8a40142c189ba73cd5be43b146ef 184 Gene3D G3DSA:2.70.70.10 54 178 4.3E-43 T 14-09-2016 ccrud_RS11235 27bb8a40142c189ba73cd5be43b146ef 184 PANTHER PTHR21666 4 177 9.2E-40 T 14-09-2016 ccrud_RS11235 27bb8a40142c189ba73cd5be43b146ef 184 SUPERFAMILY SSF51261 43 177 2.98E-48 T 14-09-2016 IPR011055 Duplicated hybrid motif ccrud_RS07150 1c3cd12edb38dce2a93f8f95e777db7d 466 PANTHER PTHR11814 1 462 9.3E-217 T 14-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 ccrud_RS07150 1c3cd12edb38dce2a93f8f95e777db7d 466 PANTHER PTHR11814:SF76 1 462 9.3E-217 T 14-09-2016 ccrud_RS07150 1c3cd12edb38dce2a93f8f95e777db7d 466 Pfam PF01740 STAS domain 383 461 8.3E-5 T 14-09-2016 IPR002645 STAS domain ccrud_RS07150 1c3cd12edb38dce2a93f8f95e777db7d 466 SUPERFAMILY SSF52091 373 461 6.08E-11 T 14-09-2016 IPR002645 STAS domain ccrud_RS07150 1c3cd12edb38dce2a93f8f95e777db7d 466 Pfam PF00916 Sulfate permease family 1 125 4.0E-19 T 14-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 ccrud_RS07150 1c3cd12edb38dce2a93f8f95e777db7d 466 Pfam PF00916 Sulfate permease family 147 338 1.4E-26 T 14-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 ccrud_RS07150 1c3cd12edb38dce2a93f8f95e777db7d 466 Gene3D G3DSA:3.30.750.24 378 461 1.0E-5 T 14-09-2016 IPR002645 STAS domain ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 SUPERFAMILY SSF46609 3 90 2.36E-31 T 14-09-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 4 85 1.3E-31 T 14-09-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 PRINTS PR01703 Manganese superoxide dismutase signature 28 41 4.8E-22 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 PRINTS PR01703 Manganese superoxide dismutase signature 68 81 4.8E-22 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 PRINTS PR01703 Manganese superoxide dismutase signature 121 129 4.8E-22 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 PRINTS PR01703 Manganese superoxide dismutase signature 7 18 4.8E-22 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 PRINTS PR01703 Manganese superoxide dismutase signature 159 171 4.8E-22 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 SUPERFAMILY SSF54719 85 198 4.58E-43 T 14-09-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 92 194 8.8E-35 T 14-09-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 PIRSF PIRSF000349 1 200 2.8E-77 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 161 168 - T 14-09-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 PANTHER PTHR11404:SF27 1 198 8.0E-100 T 14-09-2016 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 Gene3D G3DSA:1.10.287.990 22 85 2.8E-24 T 14-09-2016 ccrud_RS13335 3be67161416290c8948e1e83dc9af31a 200 PANTHER PTHR11404 1 198 8.0E-100 T 14-09-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 ccrud_RS12630 6a5073c0cc7d28f1531b84163c4f8581 100 Pfam PF08803 Putative mono-oxygenase ydhR 4 98 7.6E-37 T 14-09-2016 IPR014910 Putative monooxygenase YdhR KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- ccrud_RS12630 6a5073c0cc7d28f1531b84163c4f8581 100 PANTHER PTHR39169 1 100 1.5E-27 T 14-09-2016 ccrud_RS12630 6a5073c0cc7d28f1531b84163c4f8581 100 SUPERFAMILY SSF54909 4 96 2.86E-28 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS12630 6a5073c0cc7d28f1531b84163c4f8581 100 PANTHER PTHR39169:SF1 1 100 1.5E-27 T 14-09-2016 ccrud_RS07430 788ab13d7e0bcc782ab6cbaf840eaf93 203 PANTHER PTHR21471 1 201 3.3E-13 T 14-09-2016 ccrud_RS07430 788ab13d7e0bcc782ab6cbaf840eaf93 203 Gene3D G3DSA:3.40.630.30 3 198 1.0E-42 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS07430 788ab13d7e0bcc782ab6cbaf840eaf93 203 SUPERFAMILY SSF55729 7 196 3.09E-20 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS07430 788ab13d7e0bcc782ab6cbaf840eaf93 203 Pfam PF00583 Acetyltransferase (GNAT) family 69 176 2.8E-10 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS04340 f811adead6a9e7a4801596a9ff5665a7 137 SUPERFAMILY SSF81330 10 125 1.83E-26 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 ccrud_RS04340 f811adead6a9e7a4801596a9ff5665a7 137 PANTHER PTHR30266:SF2 1 132 3.2E-33 T 14-09-2016 ccrud_RS04340 f811adead6a9e7a4801596a9ff5665a7 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 4 18 7.5E-8 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 ccrud_RS04340 f811adead6a9e7a4801596a9ff5665a7 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 78 86 7.5E-8 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 ccrud_RS04340 f811adead6a9e7a4801596a9ff5665a7 137 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 88 97 7.5E-8 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 ccrud_RS04340 f811adead6a9e7a4801596a9ff5665a7 137 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 1 132 3.0E-30 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 ccrud_RS04340 f811adead6a9e7a4801596a9ff5665a7 137 PANTHER PTHR30266 1 132 3.2E-33 T 14-09-2016 ccrud_RS04340 f811adead6a9e7a4801596a9ff5665a7 137 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 1 130 2.5E-38 T 14-09-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 ccrud_RS13285 944ce7d1120a10327a4370f0b2262d14 181 PANTHER PTHR30543:SF1 1 152 1.3E-40 T 14-09-2016 ccrud_RS13285 944ce7d1120a10327a4370f0b2262d14 181 PANTHER PTHR30543 1 152 1.3E-40 T 14-09-2016 ccrud_RS13285 944ce7d1120a10327a4370f0b2262d14 181 Pfam PF03358 NADPH-dependent FMN reductase 1 148 9.0E-36 T 14-09-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 ccrud_RS13285 944ce7d1120a10327a4370f0b2262d14 181 Gene3D G3DSA:3.40.50.360 1 172 1.4E-44 T 14-09-2016 IPR029039 Flavoprotein-like domain ccrud_RS13285 944ce7d1120a10327a4370f0b2262d14 181 SUPERFAMILY SSF52218 1 164 9.16E-37 T 14-09-2016 IPR029039 Flavoprotein-like domain ccrud_RS07555 76ed162cba191f6d92193247ebdf5cea 149 SUPERFAMILY SSF82649 1 142 7.85E-45 T 14-09-2016 ccrud_RS07555 76ed162cba191f6d92193247ebdf5cea 149 PANTHER PTHR10093 3 90 5.0E-37 T 14-09-2016 ccrud_RS07555 76ed162cba191f6d92193247ebdf5cea 149 PANTHER PTHR10093 106 143 5.0E-37 T 14-09-2016 ccrud_RS07555 76ed162cba191f6d92193247ebdf5cea 149 Pfam PF01592 NifU-like N terminal domain 6 129 2.6E-31 T 14-09-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 ccrud_RS07555 76ed162cba191f6d92193247ebdf5cea 149 TIGRFAM TIGR01994 SUF_scaf_2: SUF system FeS assembly protein, NifU family 3 140 1.3E-49 T 14-09-2016 ccrud_RS07555 76ed162cba191f6d92193247ebdf5cea 149 Gene3D G3DSA:3.90.1010.10 5 145 4.2E-44 T 14-09-2016 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 Gene3D G3DSA:3.40.1190.10 106 341 6.8E-69 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 Gene3D G3DSA:3.90.190.20 347 491 4.6E-39 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 Pfam PF01225 Mur ligase family, catalytic domain 28 97 8.8E-12 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 Gene3D G3DSA:3.40.1390.10 1 81 2.9E-24 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 SUPERFAMILY SSF53244 348 489 1.65E-31 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 Pfam PF08245 Mur ligase middle domain 132 326 8.8E-44 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 SUPERFAMILY SSF53623 127 341 2.09E-53 T 14-09-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 33 489 8.4E-118 T 14-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 SUPERFAMILY SSF63418 1 85 1.14E-19 T 14-09-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 PANTHER PTHR23135 13 516 9.7E-140 T 14-09-2016 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 PANTHER PTHR23135:SF3 13 516 9.7E-140 T 14-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 Pfam PF02875 Mur ligase family, glutamate ligase domain 348 433 5.8E-17 T 14-09-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 ccrud_RS09475 c22d68a0300767caf6588829af0f0f4a 516 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 4 490 31.096 T 14-09-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS08685 0c695ccebda4a8457455008507a7d637 368 SMART SM00382 32 175 8.2E-6 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08685 0c695ccebda4a8457455008507a7d637 368 Gene3D G3DSA:3.40.50.300 9 170 1.2E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08685 0c695ccebda4a8457455008507a7d637 368 PANTHER PTHR32039:SF10 2 306 4.3E-114 T 14-09-2016 ccrud_RS08685 0c695ccebda4a8457455008507a7d637 368 Pfam PF07728 AAA domain (dynein-related subfamily) 36 165 1.2E-12 T 14-09-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 ccrud_RS08685 0c695ccebda4a8457455008507a7d637 368 PANTHER PTHR32039 2 306 4.3E-114 T 14-09-2016 ccrud_RS08685 0c695ccebda4a8457455008507a7d637 368 Gene3D G3DSA:1.10.8.80 218 304 1.9E-33 T 14-09-2016 ccrud_RS08685 0c695ccebda4a8457455008507a7d637 368 SUPERFAMILY SSF52540 9 300 8.75E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03485 11c404142aa9c5c4e205feabc251c986 537 Gene3D G3DSA:3.90.226.10 5 267 1.3E-77 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS03485 11c404142aa9c5c4e205feabc251c986 537 SUPERFAMILY SSF52096 286 537 1.23E-84 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS03485 11c404142aa9c5c4e205feabc251c986 537 SUPERFAMILY SSF52096 16 264 3.37E-72 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS03485 11c404142aa9c5c4e205feabc251c986 537 PANTHER PTHR22855 16 537 0.0 T 14-09-2016 ccrud_RS03485 11c404142aa9c5c4e205feabc251c986 537 Pfam PF01039 Carboxyl transferase domain 39 535 7.7E-201 T 14-09-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 ccrud_RS03485 11c404142aa9c5c4e205feabc251c986 537 Gene3D G3DSA:3.90.226.10 286 537 4.1E-97 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS03485 11c404142aa9c5c4e205feabc251c986 537 PANTHER PTHR22855:SF14 16 537 0.0 T 14-09-2016 ccrud_RS07880 4168a686705d2c2156d7483c02970b46 323 PANTHER PTHR30535:SF5 44 319 3.9E-19 T 14-09-2016 ccrud_RS07880 4168a686705d2c2156d7483c02970b46 323 PANTHER PTHR30535 44 319 3.9E-19 T 14-09-2016 ccrud_RS07880 4168a686705d2c2156d7483c02970b46 323 Gene3D G3DSA:3.40.50.1980 188 317 2.2E-18 T 14-09-2016 ccrud_RS07880 4168a686705d2c2156d7483c02970b46 323 Pfam PF01497 Periplasmic binding protein 52 293 5.4E-21 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 ccrud_RS07880 4168a686705d2c2156d7483c02970b46 323 SUPERFAMILY SSF53807 35 318 1.18E-36 T 14-09-2016 ccrud_RS07880 4168a686705d2c2156d7483c02970b46 323 Gene3D G3DSA:3.40.50.1980 49 185 5.9E-8 T 14-09-2016 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 SUPERFAMILY SSF53335 12 50 1.6E-121 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 SUPERFAMILY SSF53335 87 519 1.6E-121 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 202 218 1.0E-16 T 14-09-2016 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 339 363 1.0E-16 T 14-09-2016 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 228 242 1.0E-16 T 14-09-2016 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 301 313 1.0E-16 T 14-09-2016 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 Pfam PF02384 N-6 DNA Methylase 178 486 1.4E-108 T 14-09-2016 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 304 310 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 Pfam PF12161 HsdM N-terminal domain 13 166 1.0E-20 T 14-09-2016 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 PANTHER PTHR30408 173 506 5.7E-120 T 14-09-2016 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 TIGRFAM TIGR00497 hsdM: type I restriction-modification system, M subunit 9 508 1.3E-220 T 14-09-2016 IPR004546 Restriction endonuclease, type I, HsdM GO:0003677|GO:0009007|GO:0009307 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 PANTHER PTHR30408:SF4 173 506 5.7E-120 T 14-09-2016 ccrud_RS06305 ffdf85b074a713a821a70d7391a162c2 522 Gene3D G3DSA:3.40.50.150 204 442 3.2E-36 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 Pfam PF00005 ABC transporter 414 567 1.1E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 Gene3D G3DSA:1.20.1560.10 26 379 3.1E-90 T 14-09-2016 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 SMART SM00382 422 619 2.7E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 Pfam PF00664 ABC transporter transmembrane region 39 351 7.3E-63 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 PANTHER PTHR24221 116 646 1.0E-298 T 14-09-2016 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 SUPERFAMILY SSF52540 394 638 4.66E-85 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 PANTHER PTHR24221 16 74 1.0E-298 T 14-09-2016 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 PANTHER PTHR24221:SF271 116 646 1.0E-298 T 14-09-2016 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 ProSitePatterns PS00211 ABC transporters family signature. 539 553 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 SUPERFAMILY SSF90123 105 384 4.05E-87 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 SUPERFAMILY SSF90123 23 65 4.05E-87 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 PANTHER PTHR24221:SF271 16 74 1.0E-298 T 14-09-2016 ccrud_RS04760 d5be17cf09d4bc49661a21cf2b9299ed 655 Gene3D G3DSA:3.40.50.300 397 639 7.1E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00785 b0fc885116744e90e97c27b75e1e2861 291 SUPERFAMILY SSF56601 33 189 2.2E-9 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS04535 f6642073725cd6bc2d4dec8e63cff18f 300 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 19 246 1.9E-114 T 14-09-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 ccrud_RS04535 f6642073725cd6bc2d4dec8e63cff18f 300 PANTHER PTHR34383 7 276 5.0E-159 T 14-09-2016 ccrud_RS04535 f6642073725cd6bc2d4dec8e63cff18f 300 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 19 245 4.8E-105 T 14-09-2016 IPR022488 Polyphosphate kinase-2-related ccrud_RS04535 f6642073725cd6bc2d4dec8e63cff18f 300 PANTHER PTHR34383:SF1 7 276 5.0E-159 T 14-09-2016 ccrud_RS04535 f6642073725cd6bc2d4dec8e63cff18f 300 SUPERFAMILY SSF52540 51 239 3.58E-29 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04535 f6642073725cd6bc2d4dec8e63cff18f 300 PIRSF PIRSF028756 2 276 1.1E-123 T 14-09-2016 IPR016898 Polyphosphate kinase 2 ccrud_RS04535 f6642073725cd6bc2d4dec8e63cff18f 300 Gene3D G3DSA:3.40.50.300 17 253 3.8E-104 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 Pfam PF01336 OB-fold nucleic acid binding domain 19 101 8.7E-19 T 14-09-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 Gene3D G3DSA:3.30.1360.30 280 407 2.2E-44 T 14-09-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 SUPERFAMILY SSF55681 122 314 2.01E-98 T 14-09-2016 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 SUPERFAMILY SSF55681 401 561 2.01E-98 T 14-09-2016 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PRINTS PR01042 Aspartyl-tRNA synthetase signature 194 206 7.0E-25 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PRINTS PR01042 Aspartyl-tRNA synthetase signature 523 537 7.0E-25 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PRINTS PR01042 Aspartyl-tRNA synthetase signature 479 495 7.0E-25 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PRINTS PR01042 Aspartyl-tRNA synthetase signature 211 224 7.0E-25 T 14-09-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 SUPERFAMILY SSF55261 292 414 1.5E-34 T 14-09-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 Gene3D G3DSA:3.30.930.10 408 589 3.0E-105 T 14-09-2016 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 Gene3D G3DSA:3.30.930.10 138 279 3.0E-105 T 14-09-2016 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 2 568 35.326 T 14-09-2016 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 Pfam PF02938 GAD domain 312 395 4.8E-16 T 14-09-2016 IPR029351 GAD domain ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 Gene3D G3DSA:2.40.50.140 3 105 4.8E-38 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 Pfam PF00152 tRNA synthetases class II (D, K and N) 122 562 2.4E-99 T 14-09-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 3 587 4.0E-213 T 14-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PANTHER PTHR22594:SF5 453 576 7.9E-242 T 14-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PANTHER PTHR22594:SF5 1 300 7.9E-242 T 14-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PANTHER PTHR22594:SF5 364 430 7.9E-242 T 14-09-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PANTHER PTHR22594 453 576 7.9E-242 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PANTHER PTHR22594 364 430 7.9E-242 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 PANTHER PTHR22594 1 300 7.9E-242 T 14-09-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS07920 e10929f07ffbcd5517cbcb7364471aa2 603 SUPERFAMILY SSF50249 2 104 2.29E-30 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS07755 b848d300ec07a187a9942aa471386634 425 Pfam PF02441 Flavoprotein 17 142 4.9E-27 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 ccrud_RS07755 b848d300ec07a187a9942aa471386634 425 PANTHER PTHR14359 16 424 2.5E-145 T 14-09-2016 ccrud_RS07755 b848d300ec07a187a9942aa471386634 425 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 16 418 3.2E-116 T 14-09-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 ccrud_RS07755 b848d300ec07a187a9942aa471386634 425 SUPERFAMILY SSF52507 13 184 4.19E-53 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 ccrud_RS07755 b848d300ec07a187a9942aa471386634 425 Gene3D G3DSA:3.40.50.10300 194 421 7.0E-74 T 14-09-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 ccrud_RS07755 b848d300ec07a187a9942aa471386634 425 Gene3D G3DSA:3.40.50.1950 13 188 4.3E-56 T 14-09-2016 IPR003382 Flavoprotein GO:0003824 ccrud_RS07755 b848d300ec07a187a9942aa471386634 425 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 198 394 8.7E-65 T 14-09-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 ccrud_RS07755 b848d300ec07a187a9942aa471386634 425 SUPERFAMILY SSF102645 188 422 1.7E-62 T 14-09-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 ccrud_RS07755 b848d300ec07a187a9942aa471386634 425 PANTHER PTHR14359:SF20 16 424 2.5E-145 T 14-09-2016 ccrud_RS11895 91ae8a0c4ac15620f13f0d4624f07478 354 Gene3D G3DSA:3.40.50.720 2 139 9.6E-49 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11895 91ae8a0c4ac15620f13f0d4624f07478 354 PANTHER PTHR22604 7 353 5.4E-84 T 14-09-2016 ccrud_RS11895 91ae8a0c4ac15620f13f0d4624f07478 354 PANTHER PTHR22604:SF120 7 353 5.4E-84 T 14-09-2016 ccrud_RS11895 91ae8a0c4ac15620f13f0d4624f07478 354 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 7 122 1.2E-26 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 ccrud_RS11895 91ae8a0c4ac15620f13f0d4624f07478 354 SUPERFAMILY SSF55347 130 306 1.42E-32 T 14-09-2016 ccrud_RS11895 91ae8a0c4ac15620f13f0d4624f07478 354 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 137 244 6.3E-13 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 ccrud_RS11895 91ae8a0c4ac15620f13f0d4624f07478 354 Gene3D G3DSA:3.30.360.10 140 353 6.8E-52 T 14-09-2016 ccrud_RS11895 91ae8a0c4ac15620f13f0d4624f07478 354 SUPERFAMILY SSF51735 3 159 2.07E-50 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13045 4e625a1328eb576c21fa2d1cf5200d0e 228 Pfam PF01936 NYN domain 24 184 1.2E-4 T 14-09-2016 IPR021139 NYN domain, limkain-b1-type ccrud_RS13045 4e625a1328eb576c21fa2d1cf5200d0e 228 Gene3D G3DSA:3.40.50.1010 16 188 6.2E-6 T 14-09-2016 IPR029060 PIN domain-like ccrud_RS03180 aa367abda78d9b9315b1855225d3b8f9 216 Gene3D G3DSA:2.40.128.20 44 204 9.1E-39 T 14-09-2016 IPR012674 Calycin ccrud_RS03180 aa367abda78d9b9315b1855225d3b8f9 216 PIRSF PIRSF036893 1 215 6.6E-55 T 14-09-2016 IPR022271 Lipocalin, ApoD type ccrud_RS03180 aa367abda78d9b9315b1855225d3b8f9 216 PANTHER PTHR10612 55 192 1.7E-19 T 14-09-2016 ccrud_RS03180 aa367abda78d9b9315b1855225d3b8f9 216 Pfam PF08212 Lipocalin-like domain 61 202 2.4E-44 T 14-09-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain ccrud_RS03180 aa367abda78d9b9315b1855225d3b8f9 216 SUPERFAMILY SSF50814 55 206 5.92E-32 T 14-09-2016 IPR011038 Calycin-like ccrud_RS03180 aa367abda78d9b9315b1855225d3b8f9 216 ProSitePatterns PS00213 Lipocalin signature. 62 73 - T 14-09-2016 IPR022272 Lipocalin family conserved site ccrud_RS02565 bcb93e6688b996e2678011b62ccb1cf7 260 SUPERFAMILY SSF47413 35 83 1.88E-7 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS02565 bcb93e6688b996e2678011b62ccb1cf7 260 SMART SM00530 12 86 1.9E-5 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS02565 bcb93e6688b996e2678011b62ccb1cf7 260 Pfam PF13560 Helix-turn-helix domain 12 89 1.6E-8 T 14-09-2016 ccrud_RS02565 bcb93e6688b996e2678011b62ccb1cf7 260 PANTHER PTHR35010:SF2 7 259 5.1E-61 T 14-09-2016 ccrud_RS02565 bcb93e6688b996e2678011b62ccb1cf7 260 Gene3D G3DSA:1.10.260.40 7 83 1.2E-13 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS02565 bcb93e6688b996e2678011b62ccb1cf7 260 PANTHER PTHR35010 7 259 5.1E-61 T 14-09-2016 ccrud_RS01220 826c2a7fc167b36a84a834e71056c71f 801 PANTHER PTHR33406 1 801 3.1E-152 T 14-09-2016 ccrud_RS01220 826c2a7fc167b36a84a834e71056c71f 801 PANTHER PTHR33406:SF5 1 801 3.1E-152 T 14-09-2016 ccrud_RS01220 826c2a7fc167b36a84a834e71056c71f 801 Gene3D G3DSA:1.20.1640.10 191 372 4.3E-28 T 14-09-2016 ccrud_RS01220 826c2a7fc167b36a84a834e71056c71f 801 Gene3D G3DSA:1.20.1640.10 556 777 1.3E-26 T 14-09-2016 ccrud_RS01220 826c2a7fc167b36a84a834e71056c71f 801 SUPERFAMILY SSF82866 165 371 1.7E-29 T 14-09-2016 ccrud_RS01220 826c2a7fc167b36a84a834e71056c71f 801 SUPERFAMILY SSF82866 524 771 6.93E-27 T 14-09-2016 ccrud_RS01220 826c2a7fc167b36a84a834e71056c71f 801 Pfam PF03176 MMPL family 45 409 9.7E-55 T 14-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 ccrud_RS01220 826c2a7fc167b36a84a834e71056c71f 801 Pfam PF03176 MMPL family 526 772 1.6E-29 T 14-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 ccrud_RS12185 2155a4be4a29c05599330acdf4803e9c 137 Pfam PF14042 Domain of unknown function (DUF4247) 42 129 5.3E-14 T 14-09-2016 IPR025341 Protein of unknown function DUF4247 ccrud_RS12185 2155a4be4a29c05599330acdf4803e9c 137 ProDom PD031728 MEMBRANE PROBABLE RV2599/MT2674 PRECURSOR TRANSMEMBRANE B1177_F3_123 SIGNAL 31 113 4.0E-5 T 14-09-2016 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 1.6E-33 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 PRINTS PR00126 ATP synthase gamma subunit signature 296 317 1.6E-33 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 PRINTS PR00126 ATP synthase gamma subunit signature 265 284 1.6E-33 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 PRINTS PR00126 ATP synthase gamma subunit signature 186 203 1.6E-33 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 304 317 - T 14-09-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 PANTHER PTHR11693 1 161 9.7E-91 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 PANTHER PTHR11693 181 320 9.7E-91 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 Gene3D G3DSA:1.10.287.80 267 313 8.1E-24 T 14-09-2016 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 Pfam PF00231 ATP synthase 4 318 4.7E-84 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 SUPERFAMILY SSF52943 2 318 4.58E-77 T 14-09-2016 IPR023633 ATPase, F1 complex, gamma subunit domain ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 318 9.5E-92 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 Gene3D G3DSA:3.40.1380.10 63 212 2.1E-39 T 14-09-2016 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 Gene3D G3DSA:1.10.287.80 233 266 1.9E-27 T 14-09-2016 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 Gene3D G3DSA:1.10.287.80 19 60 1.9E-27 T 14-09-2016 ccrud_RS05845 0011e400838714c86e5394fba11cef3e 325 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 318 33.756 T 14-09-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 ccrud_RS12835 9c00180453447dcbb211053fbeed189d 436 SUPERFAMILY SSF53383 42 432 3.32E-92 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS12835 9c00180453447dcbb211053fbeed189d 436 Pfam PF00155 Aminotransferase class I and II 66 427 4.2E-46 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ccrud_RS12835 9c00180453447dcbb211053fbeed189d 436 PANTHER PTHR11751 40 431 4.1E-179 T 14-09-2016 ccrud_RS12835 9c00180453447dcbb211053fbeed189d 436 Gene3D G3DSA:3.90.1150.10 313 435 5.1E-38 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS12835 9c00180453447dcbb211053fbeed189d 436 Gene3D G3DSA:3.40.640.10 82 312 1.1E-65 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS12835 9c00180453447dcbb211053fbeed189d 436 PANTHER PTHR11751:SF303 40 431 4.1E-179 T 14-09-2016 ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 PANTHER PTHR18968:SF9 1 624 1.9E-219 T 14-09-2016 IPR030817 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22|UniPathway: UPA00076 ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 422 590 6.9E-33 T 14-09-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 Gene3D G3DSA:3.40.50.1220 217 415 1.5E-48 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 TIGRFAM TIGR04377 myo_inos_iolD: 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase 6 633 3.0E-246 T 14-09-2016 IPR030817 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase GO:0016823|GO:0019310|GO:0030976 KEGG: 00562+3.7.1.22|UniPathway: UPA00076 ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 Gene3D G3DSA:3.40.50.970 416 627 1.8E-42 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 SUPERFAMILY SSF52467 191 375 1.62E-42 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 SUPERFAMILY SSF52518 402 623 3.13E-40 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 202 1.4E-28 T 14-09-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 SUPERFAMILY SSF52518 3 216 6.38E-27 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 225 359 7.6E-34 T 14-09-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 Gene3D G3DSA:3.40.50.970 2 216 3.3E-52 T 14-09-2016 IPR029061 Thiamin diphosphate-binding fold ccrud_RS00845 e1a71539658e179103854c39ccf75333 637 PANTHER PTHR18968 1 624 1.9E-219 T 14-09-2016 ccrud_RS08885 e72dab99f1b98968af63964e15c33349 65 Pfam PF02597 ThiS family 13 65 6.1E-9 T 14-09-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 ccrud_RS08885 e72dab99f1b98968af63964e15c33349 65 Gene3D G3DSA:3.10.20.30 3 65 1.1E-18 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS08885 e72dab99f1b98968af63964e15c33349 65 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 7 65 4.5E-14 T 14-09-2016 IPR010035 ThiS, thiamine-biosynthesis ccrud_RS08885 e72dab99f1b98968af63964e15c33349 65 SUPERFAMILY SSF54285 5 64 4.25E-11 T 14-09-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp ccrud_RS02425 cc58a997348addaf97fa939c59185d58 338 PANTHER PTHR13794:SF8 67 335 1.6E-44 T 14-09-2016 IPR010197 o-succinylbenzoate synthase, MenC type 2 GO:0009234|GO:0016829 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00079|UniPathway: UPA01057 ccrud_RS02425 cc58a997348addaf97fa939c59185d58 338 Gene3D G3DSA:3.30.390.10 10 98 2.2E-46 T 14-09-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 ccrud_RS02425 cc58a997348addaf97fa939c59185d58 338 PANTHER PTHR13794 67 335 1.6E-44 T 14-09-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 ccrud_RS02425 cc58a997348addaf97fa939c59185d58 338 SUPERFAMILY SSF51604 75 288 4.06E-40 T 14-09-2016 IPR029065 Enolase C-terminal domain-like ccrud_RS02425 cc58a997348addaf97fa939c59185d58 338 Hamap MF_00470 o-succinylbenzoate synthase [menC]. 7 303 21.819 T 14-09-2016 IPR010196 o-succinylbenzoate synthase, MenC type1 GO:0000287|GO:0009234|GO:0016836 KEGG: 00010+4.2.1.11|KEGG: 00130+4.2.1.113|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-5837|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00079|UniPathway: UPA01057 ccrud_RS02425 cc58a997348addaf97fa939c59185d58 338 Gene3D G3DSA:3.20.20.120 99 265 5.0E-46 T 14-09-2016 IPR029065 Enolase C-terminal domain-like ccrud_RS02425 cc58a997348addaf97fa939c59185d58 338 Pfam PF13378 Enolase C-terminal domain-like 101 290 3.6E-27 T 14-09-2016 IPR029065 Enolase C-terminal domain-like ccrud_RS02425 cc58a997348addaf97fa939c59185d58 338 SMART SM00922 89 181 4.5E-17 T 14-09-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 ProSitePatterns PS00572 Glycosyl hydrolases family 1 active site. 366 374 - T 14-09-2016 IPR018120 Glycoside hydrolase family 1, active site ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 Pfam PF00232 Glycosyl hydrolase family 1 8 466 2.7E-141 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 Gene3D G3DSA:3.20.20.80 9 468 1.2E-140 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 PANTHER PTHR10353:SF60 8 463 9.8E-167 T 14-09-2016 ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 ProSitePatterns PS00653 Glycosyl hydrolases family 1 N-terminal signature. 13 27 - T 14-09-2016 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 SUPERFAMILY SSF51445 8 466 1.59E-150 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 PRINTS PR00131 Glycosyl hydrolase family 1 signature 289 303 1.3E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 PRINTS PR00131 Glycosyl hydrolase family 1 signature 366 374 1.3E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 PRINTS PR00131 Glycosyl hydrolase family 1 signature 408 425 1.3E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 PRINTS PR00131 Glycosyl hydrolase family 1 signature 432 444 1.3E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 PRINTS PR00131 Glycosyl hydrolase family 1 signature 387 398 1.3E-15 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS12205 3e2b9933095a825fad1d3e7c2312f18e 472 PANTHER PTHR10353 8 463 9.8E-167 T 14-09-2016 IPR001360 Glycoside hydrolase family 1 GO:0004553|GO:0005975 ccrud_RS08260 ff09853f344f3480a98a83fc88023670 162 Pfam PF11298 Protein of unknown function (DUF3099) 34 105 2.2E-23 T 14-09-2016 IPR021449 Protein of unknown function DUF3099 ccrud_RS06690 e74782ac5ad79b9f474cd093727fc198 388 Gene3D G3DSA:3.60.70.12 3 263 1.6E-85 T 14-09-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 ccrud_RS06690 e74782ac5ad79b9f474cd093727fc198 388 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 20 388 0.0 T 14-09-2016 ccrud_RS06690 e74782ac5ad79b9f474cd093727fc198 388 PANTHER PTHR23100:SF0 3 388 9.4E-132 T 14-09-2016 ccrud_RS06690 e74782ac5ad79b9f474cd093727fc198 388 SUPERFAMILY SSF56266 9 384 1.28E-117 T 14-09-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 ccrud_RS06690 e74782ac5ad79b9f474cd093727fc198 388 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 388 123.624 T 14-09-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 ccrud_RS06690 e74782ac5ad79b9f474cd093727fc198 388 PANTHER PTHR23100 3 388 9.4E-132 T 14-09-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 ccrud_RS06690 e74782ac5ad79b9f474cd093727fc198 388 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 3 388 2.7E-102 T 14-09-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 ccrud_RS06690 e74782ac5ad79b9f474cd093727fc198 388 Pfam PF01960 ArgJ family 14 388 1.4E-119 T 14-09-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 PANTHER PTHR30627:SF1 2 108 1.5E-158 T 14-09-2016 ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 PANTHER PTHR30627:SF1 170 646 1.5E-158 T 14-09-2016 ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 Gene3D G3DSA:3.40.710.10 291 633 5.8E-87 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 Gene3D G3DSA:3.90.1310.10 190 290 7.1E-23 T 14-09-2016 ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 SUPERFAMILY SSF56601 284 637 7.09E-88 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 PANTHER PTHR30627 2 108 1.5E-158 T 14-09-2016 ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 PANTHER PTHR30627 170 646 1.5E-158 T 14-09-2016 ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 SUPERFAMILY SSF56519 145 283 1.57E-28 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 SUPERFAMILY SSF56519 56 97 1.57E-28 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 Pfam PF03717 Penicillin-binding Protein dimerisation domain 61 264 7.9E-10 T 14-09-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 ccrud_RS09485 4f201923263e6ec410ca069dc2c7501b 651 Pfam PF00905 Penicillin binding protein transpeptidase domain 310 628 2.5E-78 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 5 186 0.0012 T 14-09-2016 ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 142 170 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 Gene3D G3DSA:3.40.50.720 4 245 5.5E-73 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 7.6E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 7.6E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 7.6E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 7.6E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 7.6E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 7.6E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 SUPERFAMILY SSF51735 4 245 8.33E-73 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PANTHER PTHR24322 155 187 7.4E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PANTHER PTHR24322 9 139 7.4E-51 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 3.7E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 3.7E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 3.7E-11 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02805 537aec380e7ed663b8b1de44c2ed44e7 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 244 1.6E-57 T 14-09-2016 ccrud_RS04065 49f0a704e10b6f7e566e410150b437d7 277 PANTHER PTHR12029 1 276 1.1E-88 T 14-09-2016 ccrud_RS04065 49f0a704e10b6f7e566e410150b437d7 277 Pfam PF00588 SpoU rRNA Methylase family 123 269 4.1E-29 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 ccrud_RS04065 49f0a704e10b6f7e566e410150b437d7 277 SUPERFAMILY SSF55315 6 108 6.0E-15 T 14-09-2016 IPR029064 50S ribosomal protein L30e-like ccrud_RS04065 49f0a704e10b6f7e566e410150b437d7 277 SUPERFAMILY SSF75217 106 275 4.97E-35 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases ccrud_RS04065 49f0a704e10b6f7e566e410150b437d7 277 Gene3D G3DSA:3.40.1280.10 118 274 2.2E-42 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ccrud_RS04065 49f0a704e10b6f7e566e410150b437d7 277 Gene3D G3DSA:3.30.1330.30 6 108 1.8E-12 T 14-09-2016 IPR029064 50S ribosomal protein L30e-like ccrud_RS04065 49f0a704e10b6f7e566e410150b437d7 277 PANTHER PTHR12029:SF52 1 276 1.1E-88 T 14-09-2016 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 SUPERFAMILY SSF50800 71 165 1.26E-26 T 14-09-2016 IPR011037 Pyruvate kinase-like, insert domain ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 Pfam PF00224 Pyruvate kinase, barrel domain 3 335 2.5E-118 T 14-09-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 3 464 1.3E-162 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 ProSitePatterns PS00110 Pyruvate kinase active site signature. 213 225 - T 14-09-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 Pfam PF02887 Pyruvate kinase, alpha/beta domain 353 464 2.6E-26 T 14-09-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 SUPERFAMILY SSF52935 341 466 1.11E-34 T 14-09-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 PRINTS PR01050 Pyruvate kinase family signature 311 327 6.3E-62 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 PRINTS PR01050 Pyruvate kinase family signature 267 291 6.3E-62 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 PRINTS PR01050 Pyruvate kinase family signature 215 241 6.3E-62 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 PRINTS PR01050 Pyruvate kinase family signature 185 199 6.3E-62 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 PRINTS PR01050 Pyruvate kinase family signature 60 76 6.3E-62 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 PRINTS PR01050 Pyruvate kinase family signature 292 310 6.3E-62 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 PRINTS PR01050 Pyruvate kinase family signature 242 266 6.3E-62 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 Gene3D G3DSA:2.40.33.10 74 167 4.4E-29 T 14-09-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 PANTHER PTHR11817 3 472 1.8E-193 T 14-09-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 SUPERFAMILY SSF51621 166 335 6.28E-92 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 SUPERFAMILY SSF51621 2 76 6.28E-92 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 Gene3D G3DSA:3.20.20.60 168 323 5.2E-98 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 Gene3D G3DSA:3.20.20.60 3 73 5.2E-98 T 14-09-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 ccrud_RS09135 e8b665112c10c59243a0a48681656db1 475 Gene3D G3DSA:3.40.1380.20 324 464 5.8E-33 T 14-09-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 ccrud_RS08045 f2be16708a93f7a7245308327361c058 282 Gene3D G3DSA:3.10.129.10 120 269 5.5E-46 T 14-09-2016 IPR029069 HotDog domain ccrud_RS08045 f2be16708a93f7a7245308327361c058 282 SUPERFAMILY SSF54637 112 268 1.46E-42 T 14-09-2016 IPR029069 HotDog domain ccrud_RS08045 f2be16708a93f7a7245308327361c058 282 PANTHER PTHR11066 4 282 6.7E-92 T 14-09-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 ccrud_RS08045 f2be16708a93f7a7245308327361c058 282 Gene3D G3DSA:3.10.129.10 2 111 1.0E-42 T 14-09-2016 IPR029069 HotDog domain ccrud_RS08045 f2be16708a93f7a7245308327361c058 282 Pfam PF13622 Thioesterase-like superfamily 30 266 5.6E-56 T 14-09-2016 ccrud_RS08045 f2be16708a93f7a7245308327361c058 282 SUPERFAMILY SSF54637 3 110 7.8E-38 T 14-09-2016 IPR029069 HotDog domain ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 220 252 - T 14-09-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PIRSF PIRSF000099 3 422 6.4E-125 T 14-09-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PANTHER PTHR21256:SF11 20 425 7.1E-224 T 14-09-2016 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 Pfam PF00815 Histidinol dehydrogenase 14 418 1.9E-138 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PRINTS PR00083 Histidinol dehydrogenase signature 311 336 1.2E-71 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PRINTS PR00083 Histidinol dehydrogenase signature 352 370 1.2E-71 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PRINTS PR00083 Histidinol dehydrogenase signature 191 216 1.2E-71 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PRINTS PR00083 Histidinol dehydrogenase signature 24 48 1.2E-71 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PRINTS PR00083 Histidinol dehydrogenase signature 220 241 1.2E-71 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PRINTS PR00083 Histidinol dehydrogenase signature 242 261 1.2E-71 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PRINTS PR00083 Histidinol dehydrogenase signature 99 126 1.2E-71 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PRINTS PR00083 Histidinol dehydrogenase signature 161 187 1.2E-71 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 Gene3D G3DSA:3.40.50.1980 18 230 3.6E-66 T 14-09-2016 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 24 418 8.4E-135 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 10 419 32.758 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 PANTHER PTHR21256 20 425 7.1E-224 T 14-09-2016 ccrud_RS10820 d38006c83188df276ddc55c34247054d 436 SUPERFAMILY SSF53720 18 417 1.45E-67 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 31 82 2.0E-24 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 PANTHER PTHR13479 4 83 2.6E-24 T 14-09-2016 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 Gene3D G3DSA:4.10.640.10 19 82 4.5E-29 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 Pfam PF01084 Ribosomal protein S18 28 78 2.5E-23 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 TIGRFAM TIGR00165 S18: ribosomal protein bS18 17 82 1.1E-23 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 4 83 19.491 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 SUPERFAMILY SSF46911 14 82 3.79E-24 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 PRINTS PR00974 Ribosomal protein S18 family signature 70 80 9.5E-16 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 PRINTS PR00974 Ribosomal protein S18 family signature 56 70 9.5E-16 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 PRINTS PR00974 Ribosomal protein S18 family signature 38 48 9.5E-16 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 PRINTS PR00974 Ribosomal protein S18 family signature 48 55 9.5E-16 T 14-09-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04275 37bab7cb79ac3f40227cf380c2d60aae 83 ProSitePatterns PS00057 Ribosomal protein S18 signature. 31 54 - T 14-09-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS07245 7c9e77eee027afed096fcbe427857455 327 PANTHER PTHR34580 3 214 1.8E-29 T 14-09-2016 ccrud_RS07245 7c9e77eee027afed096fcbe427857455 327 PIRSF PIRSF016838 4 327 1.3E-86 T 14-09-2016 IPR028349 Protein PafC ccrud_RS07245 7c9e77eee027afed096fcbe427857455 327 PANTHER PTHR34580:SF2 3 214 1.8E-29 T 14-09-2016 ccrud_RS07245 7c9e77eee027afed096fcbe427857455 327 Pfam PF13280 WYL domain 143 315 1.4E-25 T 14-09-2016 IPR026881 WYL domain ccrud_RS05760 62b5525ea43f37163e65aba60d0aac61 341 SUPERFAMILY SSF54631 207 334 3.66E-10 T 14-09-2016 ccrud_RS05760 62b5525ea43f37163e65aba60d0aac61 341 PANTHER PTHR22777:SF18 1 319 1.7E-57 T 14-09-2016 ccrud_RS05760 62b5525ea43f37163e65aba60d0aac61 341 Pfam PF00571 CBS domain 284 335 0.0011 T 14-09-2016 IPR000644 CBS domain ccrud_RS05760 62b5525ea43f37163e65aba60d0aac61 341 PANTHER PTHR22777 1 319 1.7E-57 T 14-09-2016 ccrud_RS05760 62b5525ea43f37163e65aba60d0aac61 341 Pfam PF01595 Domain of unknown function DUF21 10 202 4.9E-34 T 14-09-2016 IPR002550 Domain of unknown function DUF21 ccrud_RS05760 62b5525ea43f37163e65aba60d0aac61 341 Gene3D G3DSA:3.10.580.10 227 333 2.9E-5 T 14-09-2016 ccrud_RS13515 3a7e0fc3fb3e2784973f6b0c4b8ce7e2 722 Pfam PF00912 Transglycosylase 86 253 9.2E-56 T 14-09-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 ccrud_RS13515 3a7e0fc3fb3e2784973f6b0c4b8ce7e2 722 SUPERFAMILY SSF56601 235 257 9.32E-87 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS13515 3a7e0fc3fb3e2784973f6b0c4b8ce7e2 722 SUPERFAMILY SSF56601 289 642 9.32E-87 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS13515 3a7e0fc3fb3e2784973f6b0c4b8ce7e2 722 PANTHER PTHR32282:SF8 33 710 8.8E-168 T 14-09-2016 ccrud_RS13515 3a7e0fc3fb3e2784973f6b0c4b8ce7e2 722 Pfam PF00905 Penicillin binding protein transpeptidase domain 346 629 3.2E-27 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 ccrud_RS13515 3a7e0fc3fb3e2784973f6b0c4b8ce7e2 722 Gene3D G3DSA:1.10.3810.10 87 254 3.7E-63 T 14-09-2016 ccrud_RS13515 3a7e0fc3fb3e2784973f6b0c4b8ce7e2 722 PANTHER PTHR32282 33 710 8.8E-168 T 14-09-2016 ccrud_RS13515 3a7e0fc3fb3e2784973f6b0c4b8ce7e2 722 SUPERFAMILY SSF53955 65 272 3.09E-64 T 14-09-2016 IPR023346 Lysozyme-like domain ccrud_RS13515 3a7e0fc3fb3e2784973f6b0c4b8ce7e2 722 Gene3D G3DSA:3.40.710.10 255 652 5.8E-91 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS12155 05482036ddd94eb7689cf0503a5112ca 194 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 21 188 1.5E-63 T 14-09-2016 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620|UniPathway: UPA00591 ccrud_RS12155 05482036ddd94eb7689cf0503a5112ca 194 Gene3D G3DSA:3.40.50.2020 11 193 1.7E-79 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS12155 05482036ddd94eb7689cf0503a5112ca 194 PANTHER PTHR22573:SF56 14 192 5.0E-74 T 14-09-2016 ccrud_RS12155 05482036ddd94eb7689cf0503a5112ca 194 Pfam PF00156 Phosphoribosyl transferase domain 27 174 9.0E-22 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 ccrud_RS12155 05482036ddd94eb7689cf0503a5112ca 194 PANTHER PTHR22573 14 192 5.0E-74 T 14-09-2016 ccrud_RS12155 05482036ddd94eb7689cf0503a5112ca 194 SUPERFAMILY SSF53271 13 192 2.62E-53 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 PANTHER PTHR23132 8 358 7.7E-133 T 14-09-2016 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 111 122 - T 14-09-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 SUPERFAMILY SSF56059 144 356 4.55E-50 T 14-09-2016 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 Gene3D G3DSA:3.40.50.20 8 133 7.7E-34 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 Pfam PF01820 D-ala D-ala ligase N-terminus 10 133 6.5E-31 T 14-09-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 10 355 4.2E-98 T 14-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 299 326 - T 14-09-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 PIRSF PIRSF039102 6 360 7.5E-103 T 14-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 9 356 38.261 T 14-09-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 SUPERFAMILY SSF52440 8 143 9.11E-35 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 Gene3D G3DSA:3.30.1490.20 169 222 9.8E-21 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 PANTHER PTHR23132:SF8 8 358 7.7E-133 T 14-09-2016 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 Pfam PF07478 D-ala D-ala ligase C-terminus 163 353 1.9E-59 T 14-09-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 Gene3D G3DSA:3.30.470.20 134 160 9.2E-43 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS06450 e412ebf827e93adf19ac7f638476d821 361 Gene3D G3DSA:3.30.470.20 227 356 9.2E-43 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS10655 ed2c2ee915b1f1d1f37d3c00f3c4c06c 251 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 10 250 1.0E-88 T 14-09-2016 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185|UniPathway: UPA00157 ccrud_RS10655 ed2c2ee915b1f1d1f37d3c00f3c4c06c 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 39 54 8.1E-7 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS10655 ed2c2ee915b1f1d1f37d3c00f3c4c06c 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 83 96 8.1E-7 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS10655 ed2c2ee915b1f1d1f37d3c00f3c4c06c 251 PRINTS PR00111 Alpha/beta hydrolase fold signature 195 209 8.1E-7 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS10655 ed2c2ee915b1f1d1f37d3c00f3c4c06c 251 SUPERFAMILY SSF53474 5 250 1.63E-54 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS10655 ed2c2ee915b1f1d1f37d3c00f3c4c06c 251 Pfam PF12697 Alpha/beta hydrolase family 17 244 1.8E-17 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS10655 ed2c2ee915b1f1d1f37d3c00f3c4c06c 251 PANTHER PTHR10992 4 248 1.8E-33 T 14-09-2016 ccrud_RS10655 ed2c2ee915b1f1d1f37d3c00f3c4c06c 251 Gene3D G3DSA:3.40.50.1820 5 250 3.8E-52 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS10655 ed2c2ee915b1f1d1f37d3c00f3c4c06c 251 PANTHER PTHR10992:SF771 4 248 1.8E-33 T 14-09-2016 ccrud_RS00465 95e4a2c623e5b5bcbb14a6e8aacac8fa 175 Pfam PF13463 Winged helix DNA-binding domain 76 124 2.8E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS00465 95e4a2c623e5b5bcbb14a6e8aacac8fa 175 SMART SM00347 51 151 8.4E-15 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS00465 95e4a2c623e5b5bcbb14a6e8aacac8fa 175 SUPERFAMILY SSF46785 25 164 5.97E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00465 95e4a2c623e5b5bcbb14a6e8aacac8fa 175 PANTHER PTHR33164 2 175 3.3E-18 T 14-09-2016 ccrud_RS00465 95e4a2c623e5b5bcbb14a6e8aacac8fa 175 ProSitePatterns PS01117 MarR-type HTH domain signature. 89 124 - T 14-09-2016 IPR023187 Transcriptional regulator MarR-type, conserved site ccrud_RS00465 95e4a2c623e5b5bcbb14a6e8aacac8fa 175 Gene3D G3DSA:1.10.10.10 25 163 1.6E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00465 95e4a2c623e5b5bcbb14a6e8aacac8fa 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 75 91 2.0E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS00465 95e4a2c623e5b5bcbb14a6e8aacac8fa 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 141 161 2.0E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS00465 95e4a2c623e5b5bcbb14a6e8aacac8fa 175 PRINTS PR00598 Bacterial regulatory protein MarR family signature 111 127 2.0E-7 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 PANTHER PTHR11455 18 324 2.3E-150 T 14-09-2016 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 PRINTS PR00147 DNA photolyase signature 375 393 7.4E-21 T 14-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 PRINTS PR00147 DNA photolyase signature 414 428 7.4E-21 T 14-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 PRINTS PR00147 DNA photolyase signature 355 371 7.4E-21 T 14-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 PRINTS PR00147 DNA photolyase signature 155 171 7.4E-21 T 14-09-2016 IPR002081 Cryptochrome/DNA photolyase class 1 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 Gene3D G3DSA:1.10.579.10 344 482 2.8E-68 T 14-09-2016 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 Gene3D G3DSA:1.10.579.10 292 302 2.8E-68 T 14-09-2016 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 Pfam PF03441 FAD binding domain of DNA photolyase 284 480 5.5E-71 T 14-09-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 Gene3D G3DSA:1.25.40.80 158 174 4.4E-32 T 14-09-2016 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 Gene3D G3DSA:1.25.40.80 219 291 4.4E-32 T 14-09-2016 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 355 367 - T 14-09-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 SUPERFAMILY SSF48173 207 482 1.7E-93 T 14-09-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 PANTHER PTHR11455 347 483 2.3E-150 T 14-09-2016 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 SUPERFAMILY SSF52425 20 186 2.49E-48 T 14-09-2016 IPR006050 DNA photolyase, N-terminal ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 ProSitePatterns PS00691 DNA photolyases class 1 signature 2. 375 394 - T 14-09-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 PANTHER PTHR11455:SF18 347 483 2.3E-150 T 14-09-2016 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 PANTHER PTHR11455:SF18 18 324 2.3E-150 T 14-09-2016 ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 Pfam PF00875 DNA photolyase 24 174 9.1E-43 T 14-09-2016 IPR006050 DNA photolyase, N-terminal ccrud_RS03190 526f91b1a8f0c2aaabe1a4a3cef42050 483 Gene3D G3DSA:3.40.50.620 19 157 2.8E-38 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 12 90 22.823 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 Pfam PF00366 Ribosomal protein S17 19 86 1.6E-29 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 Gene3D G3DSA:2.40.50.140 14 91 2.3E-33 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 PRINTS PR00973 Ribosomal protein S17 family signature 33 56 2.4E-10 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 PRINTS PR00973 Ribosomal protein S17 family signature 75 82 2.4E-10 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 PRINTS PR00973 Ribosomal protein S17 family signature 65 75 2.4E-10 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 14 84 2.8E-32 T 14-09-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 SUPERFAMILY SSF50249 14 91 2.87E-29 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 14 85 5.0E-35 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 ProSitePatterns PS00056 Ribosomal protein S17 signature. 65 77 - T 14-09-2016 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02650 42190e82e1b4ac9b1a69f60fb59dbcb8 92 PANTHER PTHR10744 14 91 9.2E-34 T 14-09-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02755 3e31a025e9b711ae9ab73ab81190036a 132 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 132 31.86 T 14-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02755 3e31a025e9b711ae9ab73ab81190036a 132 SUPERFAMILY SSF56047 3 132 3.01E-45 T 14-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02755 3e31a025e9b711ae9ab73ab81190036a 132 Gene3D G3DSA:3.30.1370.30 2 70 4.9E-29 T 14-09-2016 ccrud_RS02755 3e31a025e9b711ae9ab73ab81190036a 132 Gene3D G3DSA:3.30.1490.10 76 132 1.0E-28 T 14-09-2016 ccrud_RS02755 3e31a025e9b711ae9ab73ab81190036a 132 PANTHER PTHR11758 1 132 5.0E-56 T 14-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 ccrud_RS02755 3e31a025e9b711ae9ab73ab81190036a 132 Pfam PF00410 Ribosomal protein S8 5 132 1.8E-50 T 14-09-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 ccrud_RS11080 e22732a2a6af38772008df22a9c0afcb 284 TIGRFAM TIGR00268 TIGR00268: TIGR00268 family protein 26 271 1.6E-56 T 14-09-2016 IPR005232 Conserved hypothetical protein CHP00268 ccrud_RS11080 e22732a2a6af38772008df22a9c0afcb 284 PANTHER PTHR11807:SF17 29 279 6.7E-40 T 14-09-2016 ccrud_RS11080 e22732a2a6af38772008df22a9c0afcb 284 PIRSF PIRSF006661 8 283 1.2E-92 T 14-09-2016 IPR005232 Conserved hypothetical protein CHP00268 ccrud_RS11080 e22732a2a6af38772008df22a9c0afcb 284 Pfam PF00733 Asparagine synthase 11 97 6.1E-7 T 14-09-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 ccrud_RS11080 e22732a2a6af38772008df22a9c0afcb 284 SUPERFAMILY SSF52402 24 216 4.41E-26 T 14-09-2016 ccrud_RS11080 e22732a2a6af38772008df22a9c0afcb 284 PANTHER PTHR11807 29 279 6.7E-40 T 14-09-2016 ccrud_RS11080 e22732a2a6af38772008df22a9c0afcb 284 Gene3D G3DSA:3.40.50.620 23 181 2.3E-22 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS02210 51004a555077c3975a4b517b89b021dc 283 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 9 96 4.4E-19 T 14-09-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS02210 51004a555077c3975a4b517b89b021dc 283 PANTHER PTHR21089 6 279 1.0E-52 T 14-09-2016 ccrud_RS02210 51004a555077c3975a4b517b89b021dc 283 SUPERFAMILY SSF51735 110 281 1.79E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02210 51004a555077c3975a4b517b89b021dc 283 Gene3D G3DSA:3.40.192.10 5 114 1.4E-29 T 14-09-2016 ccrud_RS02210 51004a555077c3975a4b517b89b021dc 283 SUPERFAMILY SSF53223 5 109 3.45E-23 T 14-09-2016 ccrud_RS02210 51004a555077c3975a4b517b89b021dc 283 Gene3D G3DSA:3.40.50.720 115 281 1.6E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02210 51004a555077c3975a4b517b89b021dc 283 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 4 282 27.471 T 14-09-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS02210 51004a555077c3975a4b517b89b021dc 283 PANTHER PTHR21089:SF1 6 279 1.0E-52 T 14-09-2016 ccrud_RS07650 8b44eab0777a8b75c653165e5cb16e26 452 SUPERFAMILY SSF111352 2 388 4.97E-94 T 14-09-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 ccrud_RS07650 8b44eab0777a8b75c653165e5cb16e26 452 ProSitePatterns PS01219 Ammonium transporters signature. 166 191 - T 14-09-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 ccrud_RS07650 8b44eab0777a8b75c653165e5cb16e26 452 Pfam PF00909 Ammonium Transporter Family 7 407 2.3E-119 T 14-09-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 ccrud_RS07650 8b44eab0777a8b75c653165e5cb16e26 452 Gene3D G3DSA:1.10.3430.10 3 388 7.4E-97 T 14-09-2016 IPR029020 Ammonium/urea transporter ccrud_RS07650 8b44eab0777a8b75c653165e5cb16e26 452 TIGRFAM TIGR00836 amt: ammonium transporter 5 407 1.1E-123 T 14-09-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 ccrud_RS07650 8b44eab0777a8b75c653165e5cb16e26 452 PANTHER PTHR11730:SF17 1 447 8.1E-118 T 14-09-2016 ccrud_RS07650 8b44eab0777a8b75c653165e5cb16e26 452 PANTHER PTHR11730 1 447 8.1E-118 T 14-09-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 ccrud_RS01675 60bc01170dbf59482807a606be4c8dbc 311 Gene3D G3DSA:3.90.25.10 179 297 3.8E-30 T 14-09-2016 ccrud_RS01675 60bc01170dbf59482807a606be4c8dbc 311 Gene3D G3DSA:3.40.50.720 1 178 1.1E-52 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01675 60bc01170dbf59482807a606be4c8dbc 311 PANTHER PTHR10366 2 309 2.0E-89 T 14-09-2016 ccrud_RS01675 60bc01170dbf59482807a606be4c8dbc 311 PANTHER PTHR10366:SF466 2 309 2.0E-89 T 14-09-2016 ccrud_RS01675 60bc01170dbf59482807a606be4c8dbc 311 SUPERFAMILY SSF51735 1 310 9.09E-86 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01675 60bc01170dbf59482807a606be4c8dbc 311 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 303 1.3E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 SUPERFAMILY SSF52402 5 172 1.67E-30 T 14-09-2016 ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 PANTHER PTHR10909 106 312 1.5E-44 T 14-09-2016 ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 Pfam PF01012 Electron transfer flavoprotein domain 6 171 1.6E-20 T 14-09-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 Gene3D G3DSA:3.40.50.1220 187 314 1.5E-52 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 PANTHER PTHR10909:SF294 106 312 1.5E-44 T 14-09-2016 ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 SMART SM00893 4 192 1.3E-14 T 14-09-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 SUPERFAMILY SSF52467 192 313 6.0E-43 T 14-09-2016 IPR029035 DHS-like NAD/FAD-binding domain ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 193 275 1.5E-31 T 14-09-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 PIRSF PIRSF000089 1 317 1.9E-89 T 14-09-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 ccrud_RS05915 e44ee31e56733dc0b942a7bb3b488258 317 Gene3D G3DSA:3.40.50.620 5 176 1.9E-30 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 SUPERFAMILY SSF54373 193 295 2.63E-7 T 14-09-2016 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 Gene3D G3DSA:3.50.50.60 12 193 2.0E-32 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 Gene3D G3DSA:3.50.50.60 291 376 2.0E-32 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 SUPERFAMILY SSF51905 291 400 4.86E-51 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 SUPERFAMILY SSF51905 13 188 4.86E-51 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 PANTHER PTHR13789:SF186 13 416 4.0E-62 T 14-09-2016 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 13 35 9.3E-8 T 14-09-2016 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 304 319 9.3E-8 T 14-09-2016 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 167 182 9.3E-8 T 14-09-2016 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 PANTHER PTHR13789 13 416 4.0E-62 T 14-09-2016 ccrud_RS13665 b7c1fb801effab18215e5a50910ee7df 442 Pfam PF01494 FAD binding domain 14 366 8.9E-17 T 14-09-2016 IPR002938 FAD-binding domain GO:0071949 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 PANTHER PTHR21000:SF11 1 372 0.0 T 14-09-2016 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 611 7.4E-238 T 14-09-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 SUPERFAMILY SSF52016 423 611 2.35E-59 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 PANTHER PTHR21000 408 613 0.0 T 14-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 14-09-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 PANTHER PTHR21000:SF11 408 613 0.0 T 14-09-2016 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 SUPERFAMILY SSF143975 3 422 7.06E-132 T 14-09-2016 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 611 44.937 T 14-09-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 Pfam PF00920 Dehydratase family 34 608 2.4E-214 T 14-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 PANTHER PTHR21000 1 372 0.0 T 14-09-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06095 0441bf5ca0bb1aee16064f03ba6a05e2 613 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 511 522 - T 14-09-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS08975 2331231eff9c92ab9dbcf55eb75575dc 292 Gene3D G3DSA:3.40.50.300 2 218 3.7E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08975 2331231eff9c92ab9dbcf55eb75575dc 292 SMART SM00382 29 203 1.7E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08975 2331231eff9c92ab9dbcf55eb75575dc 292 Pfam PF00005 ABC transporter 21 155 3.5E-30 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS08975 2331231eff9c92ab9dbcf55eb75575dc 292 SUPERFAMILY SSF52540 2 221 1.21E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08975 2331231eff9c92ab9dbcf55eb75575dc 292 PANTHER PTHR24220 260 289 3.1E-83 T 14-09-2016 ccrud_RS08975 2331231eff9c92ab9dbcf55eb75575dc 292 PANTHER PTHR24220 6 232 3.1E-83 T 14-09-2016 ccrud_RS08975 2331231eff9c92ab9dbcf55eb75575dc 292 PANTHER PTHR24220:SF429 260 289 3.1E-83 T 14-09-2016 ccrud_RS08975 2331231eff9c92ab9dbcf55eb75575dc 292 PANTHER PTHR24220:SF429 6 232 3.1E-83 T 14-09-2016 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 Pfam PF01232 Mannitol dehydrogenase Rossmann domain 34 203 1.0E-37 T 14-09-2016 IPR013131 Mannitol dehydrogenase, N-terminal GO:0016491|GO:0055114 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 SUPERFAMILY SSF51735 13 295 9.84E-92 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 ProSitePatterns PS00974 Mannitol dehydrogenases signature. 233 245 - T 14-09-2016 IPR023027 Mannitol dehydrogenase, conserved site GO:0019594|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 Gene3D G3DSA:3.40.50.720 16 295 2.7E-106 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 Gene3D G3DSA:1.10.1040.10 296 499 1.0E-58 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 PRINTS PR00084 Mannitol dehydrogenase signature 233 246 6.9E-20 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 PRINTS PR00084 Mannitol dehydrogenase signature 194 207 6.9E-20 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 PRINTS PR00084 Mannitol dehydrogenase signature 35 45 6.9E-20 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 PRINTS PR00084 Mannitol dehydrogenase signature 262 277 6.9E-20 T 14-09-2016 IPR000669 Mannitol dehydrogenase GO:0003824|GO:0008152|GO:0055114 KEGG: 00051+1.1.1.17|MetaCyc: PWY-6531 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 PANTHER PTHR30562:SF4 24 503 2.3E-135 T 14-09-2016 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 PANTHER PTHR30562 24 503 2.3E-135 T 14-09-2016 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 232 467 2.1E-71 T 14-09-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 ccrud_RS00610 aeac8632a6a639f1b85d4d84f2e7466a 503 SUPERFAMILY SSF48179 297 499 1.6E-56 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS00050 7e0facb309f5ae0ec2ca14e35d5d8fa0 355 Gene3D G3DSA:3.30.420.40 86 231 9.1E-10 T 14-09-2016 ccrud_RS00050 7e0facb309f5ae0ec2ca14e35d5d8fa0 355 PANTHER PTHR18964 62 334 1.8E-12 T 14-09-2016 ccrud_RS00050 7e0facb309f5ae0ec2ca14e35d5d8fa0 355 PANTHER PTHR18964:SF108 62 334 1.8E-12 T 14-09-2016 ccrud_RS00050 7e0facb309f5ae0ec2ca14e35d5d8fa0 355 Gene3D G3DSA:3.30.420.40 249 324 6.3E-7 T 14-09-2016 ccrud_RS00050 7e0facb309f5ae0ec2ca14e35d5d8fa0 355 SUPERFAMILY SSF53067 87 315 3.71E-13 T 14-09-2016 ccrud_RS00050 7e0facb309f5ae0ec2ca14e35d5d8fa0 355 SUPERFAMILY SSF46785 22 79 2.3E-7 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00050 7e0facb309f5ae0ec2ca14e35d5d8fa0 355 Gene3D G3DSA:1.10.10.10 19 79 1.6E-12 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11090 2e4e3a7b9d51cfe3380a96214fbe60bb 396 PANTHER PTHR36566 1 388 3.0E-82 T 14-09-2016 ccrud_RS11090 2e4e3a7b9d51cfe3380a96214fbe60bb 396 TIGRFAM TIGR00299 TIGR00299: TIGR00299 family protein 5 384 1.9E-94 T 14-09-2016 IPR002822 Uncharacterised protein family UPF0272 ccrud_RS11090 2e4e3a7b9d51cfe3380a96214fbe60bb 396 Gene3D G3DSA:3.30.70.1380 246 333 1.2E-24 T 14-09-2016 ccrud_RS11090 2e4e3a7b9d51cfe3380a96214fbe60bb 396 Gene3D G3DSA:3.10.20.300 336 393 5.1E-15 T 14-09-2016 ccrud_RS11090 2e4e3a7b9d51cfe3380a96214fbe60bb 396 Hamap MF_01074 UPF0272 protein . 1 395 35.172 T 14-09-2016 IPR002822 Uncharacterised protein family UPF0272 ccrud_RS11090 2e4e3a7b9d51cfe3380a96214fbe60bb 396 Pfam PF01969 Protein of unknown function DUF111 3 384 2.0E-131 T 14-09-2016 IPR002822 Uncharacterised protein family UPF0272 ccrud_RS11090 2e4e3a7b9d51cfe3380a96214fbe60bb 396 PANTHER PTHR36566:SF1 1 388 3.0E-82 T 14-09-2016 ccrud_RS02360 1f7677f4c29fef837e4d2277077330b5 376 SUPERFAMILY SSF56801 60 376 1.27E-54 T 14-09-2016 ccrud_RS02360 1f7677f4c29fef837e4d2277077330b5 376 PANTHER PTHR24096 44 374 1.2E-34 T 14-09-2016 ccrud_RS02360 1f7677f4c29fef837e4d2277077330b5 376 Gene3D G3DSA:3.40.50.980 71 220 8.8E-20 T 14-09-2016 ccrud_RS02360 1f7677f4c29fef837e4d2277077330b5 376 Gene3D G3DSA:3.30.300.30 282 375 2.5E-14 T 14-09-2016 ccrud_RS02360 1f7677f4c29fef837e4d2277077330b5 376 Gene3D G3DSA:2.30.38.10 221 280 1.3E-6 T 14-09-2016 ccrud_RS02360 1f7677f4c29fef837e4d2277077330b5 376 Gene3D G3DSA:3.40.50.980 37 70 5.2E-5 T 14-09-2016 ccrud_RS02360 1f7677f4c29fef837e4d2277077330b5 376 ProSitePatterns PS00455 Putative AMP-binding domain signature. 64 75 - T 14-09-2016 IPR020845 AMP-binding, conserved site ccrud_RS02360 1f7677f4c29fef837e4d2277077330b5 376 Pfam PF13193 AMP-binding enzyme C-terminal domain 297 366 6.0E-6 T 14-09-2016 IPR025110 AMP-binding enzyme C-terminal domain ccrud_RS02360 1f7677f4c29fef837e4d2277077330b5 376 Pfam PF00501 AMP-binding enzyme 55 286 1.1E-26 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 ccrud_RS11290 5156022a7cf4540b828d08070e2c66c6 238 PANTHER PTHR22936 76 220 1.0E-34 T 14-09-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 ccrud_RS11290 5156022a7cf4540b828d08070e2c66c6 238 Gene3D G3DSA:1.20.1540.10 54 218 1.5E-16 T 14-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 ccrud_RS11290 5156022a7cf4540b828d08070e2c66c6 238 SUPERFAMILY SSF144091 52 219 2.09E-28 T 14-09-2016 ccrud_RS11290 5156022a7cf4540b828d08070e2c66c6 238 Pfam PF01694 Rhomboid family 83 219 2.3E-24 T 14-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 ccrud_RS11290 5156022a7cf4540b828d08070e2c66c6 238 PANTHER PTHR22936:SF11 76 220 1.0E-34 T 14-09-2016 ccrud_RS11830 cb6583213fe568f4066621817c33ba01 271 SUPERFAMILY SSF56784 2 266 1.8E-48 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11830 cb6583213fe568f4066621817c33ba01 271 Pfam PF08282 haloacid dehalogenase-like hydrolase 5 262 2.4E-49 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11830 cb6583213fe568f4066621817c33ba01 271 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 4 236 8.2E-18 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 ccrud_RS11830 cb6583213fe568f4066621817c33ba01 271 PANTHER PTHR10000:SF8 3 269 1.9E-37 T 14-09-2016 ccrud_RS11830 cb6583213fe568f4066621817c33ba01 271 PANTHER PTHR10000 3 269 1.9E-37 T 14-09-2016 ccrud_RS11830 cb6583213fe568f4066621817c33ba01 271 Gene3D G3DSA:3.40.50.1000 2 82 3.8E-36 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11830 cb6583213fe568f4066621817c33ba01 271 Gene3D G3DSA:3.40.50.1000 181 262 3.8E-36 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS11830 cb6583213fe568f4066621817c33ba01 271 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 4 262 6.7E-65 T 14-09-2016 IPR000150 Cof protein GO:0016787 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 Gene3D G3DSA:3.40.710.10 245 426 7.3E-62 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 Gene3D G3DSA:3.40.710.10 87 137 7.3E-62 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 PANTHER PTHR30023:SF0 21 427 1.1E-51 T 14-09-2016 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 250 272 3.1E-25 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 322 336 3.1E-25 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 307 321 3.1E-25 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 384 397 3.1E-25 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 104 123 3.1E-25 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 PANTHER PTHR30023 21 427 1.1E-51 T 14-09-2016 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 220 407 2.3E-41 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 SUPERFAMILY SSF56601 85 426 6.09E-56 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 239 420 1.8E-46 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ccrud_RS12165 849d850e844b6b2f705b568a81f7b819 427 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 66 209 5.1E-32 T 14-09-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 ccrud_RS10075 1eadb972ce96eb3bf90b72afeb4d3e9f 243 PANTHER PTHR10291:SF0 2 241 1.6E-111 T 14-09-2016 ccrud_RS10075 1eadb972ce96eb3bf90b72afeb4d3e9f 243 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 14 241 3.7E-76 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS10075 1eadb972ce96eb3bf90b72afeb4d3e9f 243 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 187 204 - T 14-09-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 ccrud_RS10075 1eadb972ce96eb3bf90b72afeb4d3e9f 243 SUPERFAMILY SSF64005 14 237 8.24E-84 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS10075 1eadb972ce96eb3bf90b72afeb4d3e9f 243 Pfam PF01255 Putative undecaprenyl diphosphate synthase 21 241 2.1E-75 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS10075 1eadb972ce96eb3bf90b72afeb4d3e9f 243 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 14 242 37.818 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS10075 1eadb972ce96eb3bf90b72afeb4d3e9f 243 Gene3D G3DSA:3.40.1180.10 8 241 9.3E-92 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS10075 1eadb972ce96eb3bf90b72afeb4d3e9f 243 PANTHER PTHR10291 2 241 1.6E-111 T 14-09-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 Hamap MF_00743 Fumarate hydratase class II [fumC]. 6 463 80.869 T 14-09-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 PRINTS PR00145 Argininosuccinate lyase family signature 170 190 5.1E-6 T 14-09-2016 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 PRINTS PR00145 Argininosuccinate lyase family signature 313 329 5.1E-6 T 14-09-2016 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 PRINTS PR00145 Argininosuccinate lyase family signature 128 150 5.1E-6 T 14-09-2016 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 ProSitePatterns PS00163 Fumarate lyases signature. 313 322 - T 14-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 PANTHER PTHR11444:SF1 1 460 6.2E-221 T 14-09-2016 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 Gene3D G3DSA:1.10.40.30 404 460 9.1E-21 T 14-09-2016 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 Pfam PF00206 Lyase 14 338 2.7E-100 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 Gene3D G3DSA:1.10.275.10 5 133 1.5E-51 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 Gene3D G3DSA:1.20.200.10 134 399 1.6E-95 T 14-09-2016 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 Pfam PF10415 Fumarase C C-terminus 404 462 5.5E-20 T 14-09-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 PANTHER PTHR11444 1 460 6.2E-221 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 SUPERFAMILY SSF48557 6 458 5.03E-139 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 PRINTS PR00149 Fumarate lyase superfamily signature 129 147 9.3E-36 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 PRINTS PR00149 Fumarate lyase superfamily signature 313 329 9.3E-36 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 PRINTS PR00149 Fumarate lyase superfamily signature 267 294 9.3E-36 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS04955 9f5836523d95c2eb2ce078dc4cb5203b 469 PRINTS PR00149 Fumarate lyase superfamily signature 175 193 9.3E-36 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS10550 b3e3488f5739a214550d1e3aafbae75b 114 Gene3D G3DSA:3.40.630.30 11 94 1.9E-18 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS10550 b3e3488f5739a214550d1e3aafbae75b 114 PANTHER PTHR31435 7 113 5.3E-18 T 14-09-2016 ccrud_RS10550 b3e3488f5739a214550d1e3aafbae75b 114 SUPERFAMILY SSF55729 12 95 3.67E-20 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS10550 b3e3488f5739a214550d1e3aafbae75b 114 Pfam PF14542 GCN5-related N-acetyl-transferase 22 95 3.2E-20 T 14-09-2016 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase ccrud_RS09600 669d7f6591a64d2aed7a12bd610a5124 210 PANTHER PTHR21666 85 191 1.9E-26 T 14-09-2016 ccrud_RS09600 669d7f6591a64d2aed7a12bd610a5124 210 Gene3D G3DSA:3.90.1720.10 91 200 4.7E-38 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS09600 669d7f6591a64d2aed7a12bd610a5124 210 SUPERFAMILY SSF54001 93 210 3.6E-36 T 14-09-2016 ccrud_RS09600 669d7f6591a64d2aed7a12bd610a5124 210 Pfam PF00877 NlpC/P60 family 111 202 1.7E-20 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS04545 36f73c98ff961f038a711f535ab95441 340 PANTHER PTHR11941:SF53 10 197 3.2E-87 T 14-09-2016 ccrud_RS04545 36f73c98ff961f038a711f535ab95441 340 PANTHER PTHR11941:SF53 251 320 3.2E-87 T 14-09-2016 ccrud_RS04545 36f73c98ff961f038a711f535ab95441 340 Pfam PF16113 Enoyl-CoA hydratase/isomerase 14 336 7.9E-103 T 14-09-2016 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 ccrud_RS04545 36f73c98ff961f038a711f535ab95441 340 PANTHER PTHR11941 10 197 3.2E-87 T 14-09-2016 ccrud_RS04545 36f73c98ff961f038a711f535ab95441 340 PANTHER PTHR11941 251 320 3.2E-87 T 14-09-2016 ccrud_RS04545 36f73c98ff961f038a711f535ab95441 340 Gene3D G3DSA:3.90.226.10 10 199 1.3E-49 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS04545 36f73c98ff961f038a711f535ab95441 340 SUPERFAMILY SSF52096 250 316 4.24E-56 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS04545 36f73c98ff961f038a711f535ab95441 340 SUPERFAMILY SSF52096 5 196 4.24E-56 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS04970 c4b7859ce181b4183ddabfc8b482befe 486 PANTHER PTHR33362 62 410 4.9E-62 T 14-09-2016 ccrud_RS04970 c4b7859ce181b4183ddabfc8b482befe 486 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 62 414 1.4E-59 T 14-09-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ccrud_RS04970 c4b7859ce181b4183ddabfc8b482befe 486 PANTHER PTHR33362:SF5 62 410 4.9E-62 T 14-09-2016 ccrud_RS00765 08320017de011ff2d6f17baf483ae2d7 226 Pfam PF01810 LysE type translocator 16 215 2.9E-34 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 ccrud_RS00765 08320017de011ff2d6f17baf483ae2d7 226 PIRSF PIRSF006324 1 217 7.0E-42 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 ccrud_RS00765 08320017de011ff2d6f17baf483ae2d7 226 PANTHER PTHR30086 1 221 2.6E-44 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 ccrud_RS10080 266288a97fa263bf6e58c8d0401f6950 242 Hamap MF_00201 DNA repair protein RecO [recO]. 4 242 22.694 T 14-09-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 ccrud_RS10080 266288a97fa263bf6e58c8d0401f6950 242 SUPERFAMILY SSF57863 84 231 3.14E-33 T 14-09-2016 ccrud_RS10080 266288a97fa263bf6e58c8d0401f6950 242 Pfam PF11967 Recombination protein O N terminal 5 81 1.1E-24 T 14-09-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal ccrud_RS10080 266288a97fa263bf6e58c8d0401f6950 242 PANTHER PTHR33991 4 242 4.4E-41 T 14-09-2016 ccrud_RS10080 266288a97fa263bf6e58c8d0401f6950 242 Pfam PF02565 Recombination protein O C terminal 87 236 8.7E-32 T 14-09-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 ccrud_RS10080 266288a97fa263bf6e58c8d0401f6950 242 Gene3D G3DSA:2.40.50.140 2 82 2.0E-27 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS10080 266288a97fa263bf6e58c8d0401f6950 242 TIGRFAM TIGR00613 reco: DNA repair protein RecO 7 191 2.4E-34 T 14-09-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 ccrud_RS10080 266288a97fa263bf6e58c8d0401f6950 242 SUPERFAMILY SSF50249 5 81 1.18E-17 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS03100 bcdf4c5861a390980904b32208c78434 396 SUPERFAMILY SSF55874 301 395 2.73E-9 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS03100 bcdf4c5861a390980904b32208c78434 396 Pfam PF04024 PspC domain 23 74 1.1E-11 T 14-09-2016 IPR007168 Phage shock protein, PspC, N-terminal ccrud_RS03100 bcdf4c5861a390980904b32208c78434 396 Gene3D G3DSA:3.30.565.10 285 394 1.5E-4 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS13855 b9059a757108f149cd4d6a2987901bed 266 PANTHER PTHR20858:SF19 2 246 3.6E-84 T 14-09-2016 ccrud_RS13855 b9059a757108f149cd4d6a2987901bed 266 Pfam PF08543 Phosphomethylpyrimidine kinase 14 253 1.3E-67 T 14-09-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 ccrud_RS13855 b9059a757108f149cd4d6a2987901bed 266 SUPERFAMILY SSF53613 3 260 3.27E-60 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS13855 b9059a757108f149cd4d6a2987901bed 266 Gene3D G3DSA:3.40.1190.20 5 252 6.9E-75 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS13855 b9059a757108f149cd4d6a2987901bed 266 PANTHER PTHR20858 2 246 3.6E-84 T 14-09-2016 ccrud_RS13855 b9059a757108f149cd4d6a2987901bed 266 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 7 250 4.8E-64 T 14-09-2016 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 ccrud_RS02070 53b606f552d6a19b894a9458a415697f 94 PANTHER PTHR33677:SF3 3 93 4.1E-33 T 14-09-2016 ccrud_RS02070 53b606f552d6a19b894a9458a415697f 94 Pfam PF02583 Metal-sensitive transcriptional repressor 8 89 9.5E-32 T 14-09-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 ccrud_RS02070 53b606f552d6a19b894a9458a415697f 94 PANTHER PTHR33677 3 93 4.1E-33 T 14-09-2016 ccrud_RS07580 03c822c3bf8540445eb4c42d478aa95f 228 PANTHER PTHR30363:SF17 12 224 1.7E-31 T 14-09-2016 ccrud_RS07580 03c822c3bf8540445eb4c42d478aa95f 228 Gene3D G3DSA:1.10.10.10 17 124 4.7E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07580 03c822c3bf8540445eb4c42d478aa95f 228 SUPERFAMILY SSF46785 11 203 2.96E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07580 03c822c3bf8540445eb4c42d478aa95f 228 Pfam PF01022 Bacterial regulatory protein, arsR family 16 61 1.4E-7 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS07580 03c822c3bf8540445eb4c42d478aa95f 228 PANTHER PTHR30363 12 224 1.7E-31 T 14-09-2016 ccrud_RS12860 c23220aae3562a3d083c4042c4c8bed0 183 Pfam PF13577 SnoaL-like domain 15 157 1.7E-22 T 14-09-2016 IPR009959 Polyketide cyclase SnoaL-like domain ccrud_RS12860 c23220aae3562a3d083c4042c4c8bed0 183 Gene3D G3DSA:3.10.450.50 4 172 1.3E-37 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS12860 c23220aae3562a3d083c4042c4c8bed0 183 SUPERFAMILY SSF54427 6 170 2.87E-29 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS08485 a5919bcb04cb38f4cc84cd018d552956 107 PANTHER PTHR10245 20 91 2.2E-13 T 14-09-2016 ccrud_RS08485 a5919bcb04cb38f4cc84cd018d552956 107 SUPERFAMILY SSF47413 23 90 7.6E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS08485 a5919bcb04cb38f4cc84cd018d552956 107 SMART SM00530 32 87 8.1E-12 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS08485 a5919bcb04cb38f4cc84cd018d552956 107 Pfam PF13560 Helix-turn-helix domain 28 87 1.7E-15 T 14-09-2016 ccrud_RS08485 a5919bcb04cb38f4cc84cd018d552956 107 Gene3D G3DSA:1.10.260.40 25 91 2.2E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS13840 84008dc214f9ba5640efa6b018d0f91a 587 SMART SM00382 187 349 6.9E-5 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS13840 84008dc214f9ba5640efa6b018d0f91a 587 Gene3D G3DSA:3.40.50.300 130 383 2.7E-12 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13840 84008dc214f9ba5640efa6b018d0f91a 587 Pfam PF09848 Uncharacterized conserved protein (DUF2075) 189 567 6.4E-63 T 14-09-2016 IPR018647 Domain of unknown function DUF2075 ccrud_RS13840 84008dc214f9ba5640efa6b018d0f91a 587 SMART SM00487 158 376 0.0086 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS13840 84008dc214f9ba5640efa6b018d0f91a 587 SUPERFAMILY SSF52540 329 382 1.23E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13840 84008dc214f9ba5640efa6b018d0f91a 587 SUPERFAMILY SSF52540 122 300 1.23E-19 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00995 eb79c791d43bbb76abb0f5ad6034c7dc 404 Gene3D G3DSA:3.30.565.10 256 373 8.7E-5 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00995 eb79c791d43bbb76abb0f5ad6034c7dc 404 SUPERFAMILY SSF55874 258 378 1.43E-9 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS00860 a7f36f13fd7dd0e1947e8745b53fb8fa 290 PANTHER PTHR12110:SF18 1 249 1.6E-71 T 14-09-2016 ccrud_RS00860 a7f36f13fd7dd0e1947e8745b53fb8fa 290 PANTHER PTHR12110 1 249 1.6E-71 T 14-09-2016 ccrud_RS00860 a7f36f13fd7dd0e1947e8745b53fb8fa 290 SUPERFAMILY SSF51658 3 256 5.8E-42 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS00860 a7f36f13fd7dd0e1947e8745b53fb8fa 290 Gene3D G3DSA:3.20.20.150 6 288 1.6E-38 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS00860 a7f36f13fd7dd0e1947e8745b53fb8fa 290 Pfam PF01261 Xylose isomerase-like TIM barrel 23 239 1.9E-32 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS01145 2fef5f1fae0149fc84e844296430133f 85 Pfam PF02597 ThiS family 3 85 3.9E-13 T 14-09-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 ccrud_RS01145 2fef5f1fae0149fc84e844296430133f 85 SUPERFAMILY SSF54285 1 85 2.06E-12 T 14-09-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp ccrud_RS01145 2fef5f1fae0149fc84e844296430133f 85 Gene3D G3DSA:3.10.20.30 1 85 2.9E-16 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS04750 91d3224e5daaad5d8a354a0622adb976 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 2.0E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS04750 91d3224e5daaad5d8a354a0622adb976 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 2.0E-8 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS04750 91d3224e5daaad5d8a354a0622adb976 221 SUPERFAMILY SSF48498 84 191 7.0E-9 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS04750 91d3224e5daaad5d8a354a0622adb976 221 Gene3D G3DSA:1.10.357.10 3 190 2.5E-43 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS04750 91d3224e5daaad5d8a354a0622adb976 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 59 1.1E-15 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS04750 91d3224e5daaad5d8a354a0622adb976 221 PANTHER PTHR30328:SF12 3 198 2.0E-69 T 14-09-2016 ccrud_RS04750 91d3224e5daaad5d8a354a0622adb976 221 PANTHER PTHR30328 3 198 2.0E-69 T 14-09-2016 ccrud_RS04750 91d3224e5daaad5d8a354a0622adb976 221 SUPERFAMILY SSF46689 2 80 8.48E-19 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS04750 91d3224e5daaad5d8a354a0622adb976 221 ProSitePatterns PS01081 TetR-type HTH domain signature. 27 57 - T 14-09-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 14-09-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 Pfam PF00696 Amino acid kinase family 3 231 1.6E-52 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 SUPERFAMILY SSF55021 335 410 1.91E-21 T 14-09-2016 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 PIRSF PIRSF000726 56 414 6.8E-141 T 14-09-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 PANTHER PTHR21499 3 417 1.4E-165 T 14-09-2016 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 Gene3D G3DSA:3.40.1160.10 3 244 5.7E-71 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 2 407 9.0E-125 T 14-09-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 Pfam PF01842 ACT domain 271 329 4.8E-9 T 14-09-2016 IPR002912 ACT domain GO:0008152|GO:0016597 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 SUPERFAMILY SSF53633 4 243 9.29E-72 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 406 4.2E-116 T 14-09-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 Pfam PF13840 ACT domain 341 403 2.4E-14 T 14-09-2016 IPR027795 GATS-like ACT domain ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 PANTHER PTHR21499:SF27 3 417 1.4E-165 T 14-09-2016 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 SUPERFAMILY SSF55021 251 332 2.13E-18 T 14-09-2016 ccrud_RS01345 b71def2295ff4e510870728013f8d1e3 421 Gene3D G3DSA:3.30.70.260 266 318 5.3E-4 T 14-09-2016 ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 PANTHER PTHR32319 1 269 5.9E-99 T 14-09-2016 ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 Pfam PF01479 S4 domain 5 49 6.2E-6 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 SMART SM00363 5 71 4.6E-5 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 Gene3D G3DSA:3.10.290.10 5 95 3.0E-18 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 PANTHER PTHR32319:SF0 1 269 5.9E-99 T 14-09-2016 ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 PIRSF PIRSF005578 1 267 5.0E-90 T 14-09-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 6 241 2.1E-57 T 14-09-2016 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 Pfam PF01728 FtsJ-like methyltransferase 63 245 3.0E-21 T 14-09-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 Gene3D G3DSA:3.40.50.150 96 177 1.3E-5 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 SUPERFAMILY SSF53335 61 247 3.99E-21 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06775 48441dfb6fd73bd1e7eafe7dfb072d88 273 SUPERFAMILY SSF55174 4 57 6.18E-9 T 14-09-2016 ccrud_RS09415 3fdd997d523768e81812496b5e2b3e44 383 PANTHER PTHR35794:SF2 308 372 1.6E-13 T 14-09-2016 ccrud_RS09415 3fdd997d523768e81812496b5e2b3e44 383 Pfam PF05103 DivIVA protein 3 61 6.0E-11 T 14-09-2016 IPR007793 DivIVA family ccrud_RS09415 3fdd997d523768e81812496b5e2b3e44 383 PANTHER PTHR35794:SF2 193 230 1.6E-13 T 14-09-2016 ccrud_RS09415 3fdd997d523768e81812496b5e2b3e44 383 PANTHER PTHR35794:SF2 1 73 1.6E-13 T 14-09-2016 ccrud_RS09415 3fdd997d523768e81812496b5e2b3e44 383 PANTHER PTHR35794 193 230 1.6E-13 T 14-09-2016 ccrud_RS09415 3fdd997d523768e81812496b5e2b3e44 383 PANTHER PTHR35794 1 73 1.6E-13 T 14-09-2016 ccrud_RS09415 3fdd997d523768e81812496b5e2b3e44 383 PANTHER PTHR35794 308 372 1.6E-13 T 14-09-2016 ccrud_RS09415 3fdd997d523768e81812496b5e2b3e44 383 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 3 39 1.1E-14 T 14-09-2016 IPR019933 DivIVA domain ccrud_RS09590 0e50d8727120b770b01079c417d0cd70 392 Gene3D G3DSA:3.40.50.2000 179 371 1.8E-38 T 14-09-2016 ccrud_RS09590 0e50d8727120b770b01079c417d0cd70 392 SUPERFAMILY SSF53756 21 391 4.08E-72 T 14-09-2016 ccrud_RS09590 0e50d8727120b770b01079c417d0cd70 392 PANTHER PTHR12526 19 391 3.5E-93 T 14-09-2016 ccrud_RS09590 0e50d8727120b770b01079c417d0cd70 392 Pfam PF00534 Glycosyl transferases group 1 201 371 1.4E-37 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 ccrud_RS09590 0e50d8727120b770b01079c417d0cd70 392 PANTHER PTHR12526:SF353 19 391 3.5E-93 T 14-09-2016 ccrud_RS03355 fa271f2d665693471c91140278dea11b 259 PANTHER PTHR24220:SF266 6 256 7.8E-81 T 14-09-2016 ccrud_RS03355 fa271f2d665693471c91140278dea11b 259 Gene3D G3DSA:3.40.50.300 3 236 2.4E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03355 fa271f2d665693471c91140278dea11b 259 Pfam PF00005 ABC transporter 20 167 2.0E-26 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS03355 fa271f2d665693471c91140278dea11b 259 PANTHER PTHR24220 6 256 7.8E-81 T 14-09-2016 ccrud_RS03355 fa271f2d665693471c91140278dea11b 259 SUPERFAMILY SSF52540 5 229 8.48E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03355 fa271f2d665693471c91140278dea11b 259 SMART SM00382 29 216 2.1E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06050 a806b91b0df70b38018a8334d017c8fb 336 PANTHER PTHR10361 19 323 5.5E-93 T 14-09-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 ccrud_RS06050 a806b91b0df70b38018a8334d017c8fb 336 Pfam PF01758 Sodium Bile acid symporter family 51 229 3.6E-42 T 14-09-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 ccrud_RS02905 6cfdd18f1d81548ecb5db11dbea55f42 163 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 24.559 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02905 6cfdd18f1d81548ecb5db11dbea55f42 163 Pfam PF01196 Ribosomal protein L17 21 116 3.3E-33 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02905 6cfdd18f1d81548ecb5db11dbea55f42 163 SUPERFAMILY SSF64263 1 116 3.01E-41 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02905 6cfdd18f1d81548ecb5db11dbea55f42 163 PANTHER PTHR14413 1 119 3.8E-50 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02905 6cfdd18f1d81548ecb5db11dbea55f42 163 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 116 5.6E-38 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02905 6cfdd18f1d81548ecb5db11dbea55f42 163 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02905 6cfdd18f1d81548ecb5db11dbea55f42 163 Gene3D G3DSA:3.90.1030.10 3 116 3.0E-42 T 14-09-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02905 6cfdd18f1d81548ecb5db11dbea55f42 163 PANTHER PTHR14413:SF5 1 119 3.8E-50 T 14-09-2016 ccrud_RS00415 55d8937e24a2a6f56c0fa0228ac11ea7 417 ProSitePatterns PS00217 Sugar transport proteins signature 2. 113 138 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS00415 55d8937e24a2a6f56c0fa0228ac11ea7 417 ProSitePatterns PS00216 Sugar transport proteins signature 1. 283 300 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS00415 55d8937e24a2a6f56c0fa0228ac11ea7 417 Gene3D G3DSA:1.20.1250.20 229 413 1.1E-18 T 14-09-2016 ccrud_RS00415 55d8937e24a2a6f56c0fa0228ac11ea7 417 Gene3D G3DSA:1.20.1250.20 8 212 1.1E-27 T 14-09-2016 ccrud_RS00415 55d8937e24a2a6f56c0fa0228ac11ea7 417 PANTHER PTHR23508:SF1 3 415 3.3E-134 T 14-09-2016 ccrud_RS00415 55d8937e24a2a6f56c0fa0228ac11ea7 417 Pfam PF07690 Major Facilitator Superfamily 9 373 2.5E-35 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS00415 55d8937e24a2a6f56c0fa0228ac11ea7 417 SUPERFAMILY SSF103473 4 414 1.83E-69 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS00415 55d8937e24a2a6f56c0fa0228ac11ea7 417 PANTHER PTHR23508 3 415 3.3E-134 T 14-09-2016 ccrud_RS12990 393d38844a7accf0e6c9bc552aea1aea 1003 Pfam PF11847 Domain of unknown function (DUF3367) 8 502 3.0E-201 T 14-09-2016 IPR021798 Protein of unknown function DUF3367 MetaCyc: PWY-6397|UniPathway: UPA00963 ccrud_RS00615 9d3804fe1e9f748332d29140398fef49 444 SUPERFAMILY SSF103473 16 417 6.54E-43 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS00615 9d3804fe1e9f748332d29140398fef49 444 Gene3D G3DSA:1.20.1250.20 230 417 4.3E-13 T 14-09-2016 ccrud_RS00615 9d3804fe1e9f748332d29140398fef49 444 Gene3D G3DSA:1.20.1250.20 16 206 7.6E-20 T 14-09-2016 ccrud_RS00615 9d3804fe1e9f748332d29140398fef49 444 Pfam PF07690 Major Facilitator Superfamily 22 337 1.8E-28 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS01725 4d0bbb1b60cb7b1ecfe9c2c34df4a845 339 SUPERFAMILY SSF51735 3 327 6.82E-87 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01725 4d0bbb1b60cb7b1ecfe9c2c34df4a845 339 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 4 324 4.6E-136 T 14-09-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 ccrud_RS01725 4d0bbb1b60cb7b1ecfe9c2c34df4a845 339 Gene3D G3DSA:3.90.25.10 183 324 1.9E-47 T 14-09-2016 ccrud_RS01725 4d0bbb1b60cb7b1ecfe9c2c34df4a845 339 PANTHER PTHR10366:SF437 3 339 1.1E-161 T 14-09-2016 ccrud_RS01725 4d0bbb1b60cb7b1ecfe9c2c34df4a845 339 Pfam PF16363 GDP-mannose 4,6 dehydratase 5 299 3.9E-80 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01725 4d0bbb1b60cb7b1ecfe9c2c34df4a845 339 Gene3D G3DSA:3.40.50.720 2 182 6.4E-59 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01725 4d0bbb1b60cb7b1ecfe9c2c34df4a845 339 PANTHER PTHR10366 3 339 1.1E-161 T 14-09-2016 ccrud_RS00895 f1319667ed35ee74d29753c72b0d1f23 337 Pfam PF07582 AP endonuclease family 2 C terminus 286 325 7.5E-6 T 14-09-2016 IPR011418 AP endonuclease, family 2, C-terminal ccrud_RS00895 f1319667ed35ee74d29753c72b0d1f23 337 SUPERFAMILY SSF51658 266 327 6.68E-48 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS00895 f1319667ed35ee74d29753c72b0d1f23 337 SUPERFAMILY SSF51658 1 227 6.68E-48 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS00895 f1319667ed35ee74d29753c72b0d1f23 337 Gene3D G3DSA:3.20.20.150 1 326 4.6E-70 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS00895 f1319667ed35ee74d29753c72b0d1f23 337 Pfam PF01261 Xylose isomerase-like TIM barrel 19 236 5.9E-37 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS10775 19b209b7148b581fd041dd3e10e4c2df 157 SUPERFAMILY SSF89623 1 152 2.49E-53 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS10775 19b209b7148b581fd041dd3e10e4c2df 157 Gene3D G3DSA:3.40.1400.10 1 149 2.6E-56 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS10775 19b209b7148b581fd041dd3e10e4c2df 157 TIGRFAM TIGR02133 RPI_actino: ribose 5-phosphate isomerase 1 148 3.5E-72 T 14-09-2016 IPR011860 Ribose 5-phosphate isomerase GO:0004751 ccrud_RS10775 19b209b7148b581fd041dd3e10e4c2df 157 PIRSF PIRSF005384 1 149 3.8E-52 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS10775 19b209b7148b581fd041dd3e10e4c2df 157 PANTHER PTHR30345 1 156 1.3E-61 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS10775 19b209b7148b581fd041dd3e10e4c2df 157 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 147 6.7E-57 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS10775 19b209b7148b581fd041dd3e10e4c2df 157 Pfam PF02502 Ribose/Galactose Isomerase 3 140 1.8E-46 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 SUPERFAMILY SSF51445 637 711 9.28E-121 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 SUPERFAMILY SSF51445 194 599 9.28E-121 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 PANTHER PTHR32438 608 708 4.6E-123 T 14-09-2016 ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 151 699 6.4E-75 T 14-09-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 Gene3D G3DSA:3.20.20.80 641 697 2.9E-131 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 Gene3D G3DSA:3.20.20.80 192 602 2.9E-131 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 PANTHER PTHR32438 25 590 4.6E-123 T 14-09-2016 ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 Pfam PF02446 4-alpha-glucanotransferase 199 692 5.8E-92 T 14-09-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 PANTHER PTHR32438:SF5 25 590 4.6E-123 T 14-09-2016 ccrud_RS10145 416e0576860cabc0f3c359d5fd870388 722 PANTHER PTHR32438:SF5 608 708 4.6E-123 T 14-09-2016 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 Pfam PF00171 Aldehyde dehydrogenase family 9 289 5.3E-14 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 27 421 2.3E-132 T 14-09-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 Gene3D G3DSA:3.40.309.10 240 389 2.7E-33 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 PIRSF PIRSF000151 11 432 1.7E-157 T 14-09-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 Gene3D G3DSA:3.40.605.10 390 431 1.4E-93 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 Gene3D G3DSA:3.40.605.10 10 237 1.4E-93 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 18 431 38.482 T 14-09-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 PANTHER PTHR11063:SF8 7 431 7.6E-153 T 14-09-2016 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 338 359 - T 14-09-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 SUPERFAMILY SSF53720 17 431 5.76E-104 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS10470 96a132383dbef0c8b84bab6ffd77aa88 432 PANTHER PTHR11063 7 431 7.6E-153 T 14-09-2016 ccrud_RS08415 7390e6890f44c1e86eb6a1da3ded4e27 348 Gene3D G3DSA:3.40.630.30 200 337 2.1E-8 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS08415 7390e6890f44c1e86eb6a1da3ded4e27 348 SUPERFAMILY SSF55729 149 339 5.06E-12 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS11365 5e0c0f3100db9691c8ce3a316f423e83 148 PANTHER PTHR37297:SF1 1 145 7.1E-45 T 14-09-2016 ccrud_RS11365 5e0c0f3100db9691c8ce3a316f423e83 148 Gene3D G3DSA:3.40.50.360 3 131 2.3E-49 T 14-09-2016 IPR029039 Flavoprotein-like domain ccrud_RS11365 5e0c0f3100db9691c8ce3a316f423e83 148 PANTHER PTHR37297 1 145 7.1E-45 T 14-09-2016 ccrud_RS11365 5e0c0f3100db9691c8ce3a316f423e83 148 PIRSF PIRSF005087 1 141 1.5E-57 T 14-09-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI ccrud_RS11365 5e0c0f3100db9691c8ce3a316f423e83 148 Pfam PF07972 NrdI Flavodoxin like 4 126 2.0E-44 T 14-09-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI ccrud_RS11365 5e0c0f3100db9691c8ce3a316f423e83 148 SUPERFAMILY SSF52218 2 126 1.68E-19 T 14-09-2016 IPR029039 Flavoprotein-like domain ccrud_RS11365 5e0c0f3100db9691c8ce3a316f423e83 148 Hamap MF_00128 Protein NrdI [nrdI]. 2 137 34.424 T 14-09-2016 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial ccrud_RS11365 5e0c0f3100db9691c8ce3a316f423e83 148 TIGRFAM TIGR00333 nrdI: nrdI protein 4 127 3.0E-42 T 14-09-2016 IPR004465 Ribonucleotide reductase Class Ib, NrdI ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 ProSitePatterns PS00605 ATP synthase c subunit signature. 46 67 - T 14-09-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 26 80 3.7E-22 T 14-09-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 Hamap MF_01396 ATP synthase subunit c [atpH]. 15 80 13.337 T 14-09-2016 ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 SUPERFAMILY SSF81333 18 80 1.96E-18 T 14-09-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 PRINTS PR00124 ATP synthase C subunit signature 18 37 3.2E-20 T 14-09-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 PRINTS PR00124 ATP synthase C subunit signature 56 80 3.2E-20 T 14-09-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 PRINTS PR00124 ATP synthase C subunit signature 39 54 3.2E-20 T 14-09-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 Gene3D G3DSA:1.20.20.10 20 80 5.1E-26 T 14-09-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 Pfam PF00137 ATP synthase subunit C 22 79 2.7E-12 T 14-09-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 ccrud_RS05825 9c4db6beb0a457c97e8e4c86a14cec4c 80 PANTHER PTHR10031 15 80 1.8E-20 T 14-09-2016 ccrud_RS10230 1d36f87cffdcb167e6627bd06916e43b 280 Pfam PF00005 ABC transporter 36 192 4.0E-34 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS10230 1d36f87cffdcb167e6627bd06916e43b 280 PANTHER PTHR24220:SF408 21 275 3.0E-92 T 14-09-2016 ccrud_RS10230 1d36f87cffdcb167e6627bd06916e43b 280 PANTHER PTHR24220 21 275 3.0E-92 T 14-09-2016 ccrud_RS10230 1d36f87cffdcb167e6627bd06916e43b 280 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 20 260 6.4E-87 T 14-09-2016 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 ccrud_RS10230 1d36f87cffdcb167e6627bd06916e43b 280 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS10230 1d36f87cffdcb167e6627bd06916e43b 280 Gene3D G3DSA:3.40.50.300 20 257 3.1E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10230 1d36f87cffdcb167e6627bd06916e43b 280 SUPERFAMILY SSF52540 20 256 3.17E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10230 1d36f87cffdcb167e6627bd06916e43b 280 SMART SM00382 45 248 1.3E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS02285 cf260336fe0d19a736fe7c5e6b9c83d6 207 PANTHER PTHR10681 72 196 2.9E-22 T 14-09-2016 ccrud_RS02285 cf260336fe0d19a736fe7c5e6b9c83d6 207 Pfam PF00578 AhpC/TSA family 61 181 5.9E-14 T 14-09-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 ccrud_RS02285 cf260336fe0d19a736fe7c5e6b9c83d6 207 Gene3D G3DSA:3.40.30.10 6 200 1.4E-27 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS02285 cf260336fe0d19a736fe7c5e6b9c83d6 207 SUPERFAMILY SSF52833 72 206 1.47E-21 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS02285 cf260336fe0d19a736fe7c5e6b9c83d6 207 PANTHER PTHR10681:SF125 72 196 2.9E-22 T 14-09-2016 ccrud_RS12000 fdd6148b70096891965a10ec575682ec 239 PANTHER PTHR26402 12 236 1.2E-87 T 14-09-2016 ccrud_RS12000 fdd6148b70096891965a10ec575682ec 239 Gene3D G3DSA:1.10.10.10 141 237 1.2E-32 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12000 fdd6148b70096891965a10ec575682ec 239 Pfam PF00072 Response regulator receiver domain 14 122 2.1E-26 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS12000 fdd6148b70096891965a10ec575682ec 239 PANTHER PTHR26402:SF50 12 236 1.2E-87 T 14-09-2016 ccrud_RS12000 fdd6148b70096891965a10ec575682ec 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 163 236 6.2E-25 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS12000 fdd6148b70096891965a10ec575682ec 239 SMART SM00448 12 122 1.6E-40 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS12000 fdd6148b70096891965a10ec575682ec 239 Gene3D G3DSA:3.40.50.2300 11 131 2.4E-36 T 14-09-2016 ccrud_RS12000 fdd6148b70096891965a10ec575682ec 239 SUPERFAMILY SSF52172 13 181 3.42E-39 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS12000 fdd6148b70096891965a10ec575682ec 239 SMART SM00862 160 236 7.4E-24 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS08605 6065c2621465ad31daeccb260ae1b8f0 268 PANTHER PTHR36492 4 248 1.9E-75 T 14-09-2016 ccrud_RS08605 6065c2621465ad31daeccb260ae1b8f0 268 PANTHER PTHR36492:SF1 4 248 1.9E-75 T 14-09-2016 ccrud_RS08605 6065c2621465ad31daeccb260ae1b8f0 268 SUPERFAMILY SSF56300 158 252 5.7E-27 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS08605 6065c2621465ad31daeccb260ae1b8f0 268 SUPERFAMILY SSF56300 3 124 5.7E-27 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS08605 6065c2621465ad31daeccb260ae1b8f0 268 Gene3D G3DSA:3.60.21.10 4 79 2.1E-22 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS08605 6065c2621465ad31daeccb260ae1b8f0 268 Gene3D G3DSA:3.60.21.10 157 246 2.1E-22 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS08605 6065c2621465ad31daeccb260ae1b8f0 268 Pfam PF00149 Calcineurin-like phosphoesterase 4 227 1.1E-15 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 ccrud_RS09725 d9db03ac6a268084002962158a0382e9 251 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 91 144 7.0E-21 T 14-09-2016 ccrud_RS09725 d9db03ac6a268084002962158a0382e9 251 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 87 102 - T 14-09-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 ccrud_RS09725 d9db03ac6a268084002962158a0382e9 251 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 45 215 6.0E-39 T 14-09-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 ccrud_RS09725 d9db03ac6a268084002962158a0382e9 251 PANTHER PTHR10993 22 234 3.4E-66 T 14-09-2016 ccrud_RS09725 d9db03ac6a268084002962158a0382e9 251 SUPERFAMILY SSF55681 20 225 9.94E-60 T 14-09-2016 ccrud_RS09725 d9db03ac6a268084002962158a0382e9 251 PIRSF PIRSF016262 18 237 2.0E-58 T 14-09-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 ccrud_RS09725 d9db03ac6a268084002962158a0382e9 251 Gene3D G3DSA:3.90.1550.10 21 225 2.1E-68 T 14-09-2016 ccrud_RS09725 d9db03ac6a268084002962158a0382e9 251 Pfam PF03099 Biotin/lipoate A/B protein ligase family 74 179 3.7E-9 T 14-09-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 ccrud_RS09725 d9db03ac6a268084002962158a0382e9 251 Hamap MF_00013 Octanoyltransferase [lipB]. 21 229 34.444 T 14-09-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.40.50.720 2018 2102 1.8E-8 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF53901 2676 2889 2.18E-33 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.40.47.10 2341 2378 1.2E-29 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.40.47.10 2496 2720 1.2E-29 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Pfam PF01575 MaoC like domain 1143 1235 3.0E-15 T 14-09-2016 IPR002539 MaoC-like domain ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 2611 2627 - T 14-09-2016 IPR018201 Beta-ketoacyl synthase, active site ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 510 529 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 490 508 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 1393 1414 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 683 701 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 1276 1299 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 779 803 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 1155 1177 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 1255 1274 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 1357 1376 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 1177 1198 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 359 379 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PRINTS PR01483 Fatty acid synthase signature 385 403 1.9E-99 T 14-09-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1266 1625 2.8E-6 T 14-09-2016 IPR020801 Polyketide synthase, acyl transferase domain ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.40.47.10 2726 2886 1.9E-27 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.10.129.10 1103 1258 4.6E-24 T 14-09-2016 IPR029069 HotDog domain ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Pfam PF00698 Acyl transferase domain 1265 1467 5.8E-33 T 14-09-2016 IPR014043 Acyl transferase ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF55048 158 210 3.53E-5 T 14-09-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.40.366.10 1486 1632 6.4E-40 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.40.366.10 15 151 3.4E-6 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.40.366.10 1259 1400 6.4E-40 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.40.366.10 238 289 3.4E-6 T 14-09-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PANTHER PTHR10982:SF17 91 1685 0.0 T 14-09-2016 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF52151 1546 1617 7.59E-29 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF52151 1263 1406 7.59E-29 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF52151 1488 1509 7.59E-29 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF51735 2022 2271 9.72E-11 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF51412 365 613 2.06E-12 T 14-09-2016 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Gene3D G3DSA:3.30.70.250 158 211 2.8E-4 T 14-09-2016 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 2716 2841 5.8E-26 T 14-09-2016 IPR014031 Beta-ketoacyl synthase, C-terminal ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Pfam PF08354 Domain of unknown function (DUF1729) 785 837 3.7E-17 T 14-09-2016 IPR013565 Domain of unknown function DUF1729 GO:0004318|GO:0055114 KEGG: 00061+2.3.1.39+4.2.1.59+1.3.1.9+3.1.2.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-4381|MetaCyc: PWY-5142|MetaCyc: PWY-5147|MetaCyc: PWY-5366|MetaCyc: PWY-5367|MetaCyc: PWY-5966|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-6799|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7723|MetaCyc: PWYG-321 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF54637 1154 1256 4.61E-14 T 14-09-2016 IPR029069 HotDog domain ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2474 2707 3.5E-26 T 14-09-2016 IPR014030 Beta-ketoacyl synthase, N-terminal ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF52151 16 157 2.33E-7 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF52151 240 274 2.33E-7 T 14-09-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 SUPERFAMILY SSF53901 2495 2715 9.49E-28 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS04120 e103626757efd6b8813c848f7235a0b8 2970 PANTHER PTHR10982 91 1685 0.0 T 14-09-2016 ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 PANTHER PTHR12725:SF63 76 200 2.0E-24 T 14-09-2016 ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 85 181 1.7E-7 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 Gene3D G3DSA:3.40.50.1000 3 190 3.9E-32 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 PANTHER PTHR12725 76 200 2.0E-24 T 14-09-2016 ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 SUPERFAMILY SSF56784 6 195 2.7E-33 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 133 149 9.9E-13 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 4 15 9.9E-13 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 101 114 9.9E-13 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 151 171 9.9E-13 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 Pfam PF13419 Haloacid dehalogenase-like hydrolase 88 187 1.2E-9 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS00670 633c34f7f21566323e9dffd4638137b4 201 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 138 188 1.9E-11 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS07630 69e9d0e2edfe6b53721606ac2f6553e1 319 PANTHER PTHR38658:SF1 1 319 8.2E-49 T 14-09-2016 ccrud_RS07630 69e9d0e2edfe6b53721606ac2f6553e1 319 PANTHER PTHR38658 1 319 8.2E-49 T 14-09-2016 ccrud_RS07630 69e9d0e2edfe6b53721606ac2f6553e1 319 Pfam PF10128 Glucose-6-phosphate dehydrogenase subunit 53 308 1.1E-84 T 14-09-2016 IPR004555 Glucose-6-phosphate dehydrogenase assembly protein OpcA ccrud_RS13635 7dd77081bbc9b4e7a1f7d6ad2a38e02a 126 PANTHER PTHR36924:SF1 14 119 5.6E-38 T 14-09-2016 ccrud_RS13635 7dd77081bbc9b4e7a1f7d6ad2a38e02a 126 Gene3D G3DSA:1.10.260.40 17 93 5.8E-34 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS13635 7dd77081bbc9b4e7a1f7d6ad2a38e02a 126 PANTHER PTHR36924 14 119 5.6E-38 T 14-09-2016 ccrud_RS13635 7dd77081bbc9b4e7a1f7d6ad2a38e02a 126 SMART SM00530 26 82 1.4E-6 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS13635 7dd77081bbc9b4e7a1f7d6ad2a38e02a 126 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 19 93 1.8E-32 T 14-09-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 ccrud_RS13635 7dd77081bbc9b4e7a1f7d6ad2a38e02a 126 Pfam PF01381 Helix-turn-helix 30 76 1.0E-9 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS13635 7dd77081bbc9b4e7a1f7d6ad2a38e02a 126 SUPERFAMILY SSF47413 23 105 4.83E-27 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS02315 f2bbe7edc5fd7f9d995bcf1b977c68ec 259 Gene3D G3DSA:3.40.50.300 5 225 3.8E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02315 f2bbe7edc5fd7f9d995bcf1b977c68ec 259 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS02315 f2bbe7edc5fd7f9d995bcf1b977c68ec 259 PANTHER PTHR24220 8 248 1.1E-83 T 14-09-2016 ccrud_RS02315 f2bbe7edc5fd7f9d995bcf1b977c68ec 259 SUPERFAMILY SSF52540 7 232 3.12E-61 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02315 f2bbe7edc5fd7f9d995bcf1b977c68ec 259 Pfam PF00005 ABC transporter 27 166 1.8E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS02315 f2bbe7edc5fd7f9d995bcf1b977c68ec 259 PANTHER PTHR24220:SF589 8 248 1.1E-83 T 14-09-2016 ccrud_RS02315 f2bbe7edc5fd7f9d995bcf1b977c68ec 259 SMART SM00382 36 231 3.5E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS13370 40333a2ac967729906851bfbd01b65e0 434 Pfam PF07730 Histidine kinase 208 281 7.4E-17 T 14-09-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 ccrud_RS13370 40333a2ac967729906851bfbd01b65e0 434 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 319 412 1.7E-7 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS13370 40333a2ac967729906851bfbd01b65e0 434 PIRSF PIRSF037434 15 419 1.2E-163 T 14-09-2016 IPR017205 Signal transduction histidine kinase, ChrS ccrud_RS13370 40333a2ac967729906851bfbd01b65e0 434 PANTHER PTHR24421 92 427 1.7E-78 T 14-09-2016 ccrud_RS13370 40333a2ac967729906851bfbd01b65e0 434 Gene3D G3DSA:3.30.565.10 314 414 1.9E-10 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS13370 40333a2ac967729906851bfbd01b65e0 434 SUPERFAMILY SSF55874 291 411 1.11E-16 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS13370 40333a2ac967729906851bfbd01b65e0 434 SMART SM00387 316 414 1.9E-4 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS13370 40333a2ac967729906851bfbd01b65e0 434 PANTHER PTHR24421:SF24 92 427 1.7E-78 T 14-09-2016 ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 SUPERFAMILY SSF56349 2 297 4.12E-59 T 14-09-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 303 8.4E-104 T 14-09-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 Pfam PF00589 Phage integrase family 118 290 2.7E-50 T 14-09-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 PANTHER PTHR30349 10 303 9.8E-96 T 14-09-2016 ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 PANTHER PTHR30349:SF5 10 303 9.8E-96 T 14-09-2016 ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 3 304 31.262 T 14-09-2016 IPR023009 Tyrosine recombinase XerC/XerD ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 3 304 54.885 T 14-09-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 Gene3D G3DSA:1.10.443.10 118 296 9.0E-58 T 14-09-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 Gene3D G3DSA:1.10.150.130 9 105 7.9E-23 T 14-09-2016 IPR023109 Integrase/recombinase, N-terminal ccrud_RS06810 87809665f11ce0179b9db9b28df91fee 304 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 95 1.0E-17 T 14-09-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 ccrud_RS01950 e6caa6992be1fc5e0a3ce3020a7eb359 307 Gene3D G3DSA:3.90.550.10 9 289 1.7E-54 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01950 e6caa6992be1fc5e0a3ce3020a7eb359 307 PANTHER PTHR22572 14 283 5.8E-90 T 14-09-2016 ccrud_RS01950 e6caa6992be1fc5e0a3ce3020a7eb359 307 SUPERFAMILY SSF53448 14 294 2.7E-54 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS01950 e6caa6992be1fc5e0a3ce3020a7eb359 307 Pfam PF00483 Nucleotidyl transferase 16 277 1.4E-27 T 14-09-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 ccrud_RS01950 e6caa6992be1fc5e0a3ce3020a7eb359 307 PANTHER PTHR22572:SF80 14 283 5.8E-90 T 14-09-2016 ccrud_RS09735 60e9748fdd413bbd623c8ad900a05a3e 260 Pfam PF13829 Domain of unknown function (DUF4191) 21 244 1.0E-82 T 14-09-2016 IPR025445 Protein of unknown function DUF4191 ccrud_RS09735 60e9748fdd413bbd623c8ad900a05a3e 260 ProDom PD037701 MEMBRANE INTEGRAL TRANSMEMBRANE RV2219/MT2276 NARROWLY PROBABLE PRECURSOR SIGNAL MLCB22.21 24 235 2.0E-99 T 14-09-2016 ccrud_RS08815 8f909e7dc24f589be7e12678bb0bb87c 228 PIRSF PIRSF005650 1 228 2.2E-85 T 14-09-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 ccrud_RS08815 8f909e7dc24f589be7e12678bb0bb87c 228 SUPERFAMILY SSF53633 2 226 4.32E-70 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS08815 8f909e7dc24f589be7e12678bb0bb87c 228 PANTHER PTHR21499 1 227 8.0E-105 T 14-09-2016 ccrud_RS08815 8f909e7dc24f589be7e12678bb0bb87c 228 Gene3D G3DSA:3.40.1160.10 2 227 2.0E-86 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS08815 8f909e7dc24f589be7e12678bb0bb87c 228 Pfam PF00696 Amino acid kinase family 2 206 8.1E-30 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS08815 8f909e7dc24f589be7e12678bb0bb87c 228 Hamap MF_01220_B Uridylate kinase [pyrH]. 1 227 39.132 T 14-09-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 ccrud_RS08815 8f909e7dc24f589be7e12678bb0bb87c 228 PANTHER PTHR21499:SF23 1 227 8.0E-105 T 14-09-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 ccrud_RS08815 8f909e7dc24f589be7e12678bb0bb87c 228 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 1 227 2.4E-85 T 14-09-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 TIGRFAM TIGR01900 dapE-gram_pos: succinyl-diaminopimelate desuccinylase 19 373 7.3E-144 T 14-09-2016 IPR010174 Succinyl-diaminopimelate desuccinylase, DapE GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 Gene3D G3DSA:3.30.70.360 191 280 6.2E-20 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 Gene3D G3DSA:3.40.630.10 23 190 5.0E-45 T 14-09-2016 ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 Gene3D G3DSA:3.40.630.10 305 373 5.0E-45 T 14-09-2016 ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 PANTHER PTHR11014 13 372 6.6E-54 T 14-09-2016 ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 SUPERFAMILY SSF55031 182 280 6.43E-17 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 Pfam PF07687 Peptidase dimerisation domain 182 280 4.1E-13 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 SUPERFAMILY SSF53187 297 372 5.78E-44 T 14-09-2016 ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 SUPERFAMILY SSF53187 23 194 5.78E-44 T 14-09-2016 ccrud_RS05355 62a980cd4ec5bd9fb2d1c08fdb9b6ee0 374 Pfam PF01546 Peptidase family M20/M25/M40 79 373 7.3E-20 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 ccrud_RS10395 76beaec2c1fc72e1186f56b156426d36 198 PANTHER PTHR35011 1 175 4.7E-33 T 14-09-2016 ccrud_RS10395 76beaec2c1fc72e1186f56b156426d36 198 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 151 4.2E-31 T 14-09-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component ccrud_RS10395 76beaec2c1fc72e1186f56b156426d36 198 PANTHER PTHR35011:SF2 1 175 4.7E-33 T 14-09-2016 ccrud_RS11850 5ff087393a50bdee9dcb1808ee187482 485 Gene3D G3DSA:3.40.50.2000 5 265 5.1E-81 T 14-09-2016 ccrud_RS11850 5ff087393a50bdee9dcb1808ee187482 485 SUPERFAMILY SSF53756 6 479 4.21E-132 T 14-09-2016 ccrud_RS11850 5ff087393a50bdee9dcb1808ee187482 485 PANTHER PTHR10788:SF6 1 476 2.2E-164 T 14-09-2016 ccrud_RS11850 5ff087393a50bdee9dcb1808ee187482 485 Pfam PF00982 Glycosyltransferase family 20 6 478 8.8E-131 T 14-09-2016 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 ccrud_RS11850 5ff087393a50bdee9dcb1808ee187482 485 PANTHER PTHR10788 1 476 2.2E-164 T 14-09-2016 ccrud_RS11850 5ff087393a50bdee9dcb1808ee187482 485 Gene3D G3DSA:3.40.50.2000 276 462 2.2E-65 T 14-09-2016 ccrud_RS05360 7e3cfad7f7bb235beea427345a59babc 256 Gene3D G3DSA:3.40.50.450 49 244 9.9E-64 T 14-09-2016 ccrud_RS05360 7e3cfad7f7bb235beea427345a59babc 256 PANTHER PTHR31223 32 242 1.9E-91 T 14-09-2016 ccrud_RS05360 7e3cfad7f7bb235beea427345a59babc 256 SUPERFAMILY SSF102405 40 242 1.98E-62 T 14-09-2016 ccrud_RS05360 7e3cfad7f7bb235beea427345a59babc 256 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 69 240 3.7E-45 T 14-09-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG ccrud_RS05360 7e3cfad7f7bb235beea427345a59babc 256 Pfam PF03641 Possible lysine decarboxylase 112 240 5.7E-33 T 14-09-2016 IPR031100 LOG family ccrud_RS05360 7e3cfad7f7bb235beea427345a59babc 256 PANTHER PTHR31223:SF1 32 242 1.9E-91 T 14-09-2016 ccrud_RS11900 5a44d28c43ec90f650e32bc41f9c9669 445 PANTHER PTHR23508 23 445 3.5E-133 T 14-09-2016 ccrud_RS11900 5a44d28c43ec90f650e32bc41f9c9669 445 SUPERFAMILY SSF103473 18 436 1.07E-58 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS11900 5a44d28c43ec90f650e32bc41f9c9669 445 Pfam PF00083 Sugar (and other) transporter 258 434 1.9E-11 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS11900 5a44d28c43ec90f650e32bc41f9c9669 445 Pfam PF00083 Sugar (and other) transporter 35 232 2.2E-21 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS11900 5a44d28c43ec90f650e32bc41f9c9669 445 PANTHER PTHR23508:SF19 23 445 3.5E-133 T 14-09-2016 ccrud_RS11900 5a44d28c43ec90f650e32bc41f9c9669 445 ProSitePatterns PS00216 Sugar transport proteins signature 1. 308 325 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS11900 5a44d28c43ec90f650e32bc41f9c9669 445 Gene3D G3DSA:1.20.1250.20 30 238 1.1E-23 T 14-09-2016 ccrud_RS11900 5a44d28c43ec90f650e32bc41f9c9669 445 Gene3D G3DSA:1.20.1250.20 259 434 1.7E-15 T 14-09-2016 ccrud_RS12815 159de1b0815d1b286b722fd083638b0d 211 PANTHER PTHR14239:SF0 7 189 1.3E-28 T 14-09-2016 ccrud_RS12815 159de1b0815d1b286b722fd083638b0d 211 Gene3D G3DSA:3.40.50.720 4 191 4.9E-41 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12815 159de1b0815d1b286b722fd083638b0d 211 SUPERFAMILY SSF51735 11 195 1.94E-27 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS12815 159de1b0815d1b286b722fd083638b0d 211 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 11 98 2.4E-18 T 14-09-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal ccrud_RS12815 159de1b0815d1b286b722fd083638b0d 211 PANTHER PTHR14239 7 189 1.3E-28 T 14-09-2016 ccrud_RS05140 ff19997bd95cb84deaf85fa15cc08a62 184 SUPERFAMILY SSF46785 97 164 1.51E-7 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05140 ff19997bd95cb84deaf85fa15cc08a62 184 Gene3D G3DSA:1.10.10.10 89 164 2.3E-9 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03280 ad11e5808f3b89de5640587eebfa5d1d 377 PANTHER PTHR32268 7 372 2.3E-117 T 14-09-2016 ccrud_RS03280 ad11e5808f3b89de5640587eebfa5d1d 377 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 17 359 2.3E-133 T 14-09-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 ccrud_RS03280 ad11e5808f3b89de5640587eebfa5d1d 377 Gene3D G3DSA:3.40.50.1820 27 359 3.2E-32 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS03280 ad11e5808f3b89de5640587eebfa5d1d 377 Pfam PF00561 alpha/beta hydrolase fold 48 347 8.1E-33 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS03280 ad11e5808f3b89de5640587eebfa5d1d 377 PANTHER PTHR32268:SF11 7 372 2.3E-117 T 14-09-2016 ccrud_RS03280 ad11e5808f3b89de5640587eebfa5d1d 377 PIRSF PIRSF000443 1 368 3.4E-113 T 14-09-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 ccrud_RS03280 ad11e5808f3b89de5640587eebfa5d1d 377 Hamap MF_00296 Homoserine O-acetyltransferase [metX]. 2 361 45.717 T 14-09-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 ccrud_RS03280 ad11e5808f3b89de5640587eebfa5d1d 377 SUPERFAMILY SSF53474 13 359 4.01E-80 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11255 400cc5045109c92ca3d0bfc14f428364 118 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 22 106 2.5E-26 T 14-09-2016 IPR023845 Domain of unknown function DUF3817, transmembrane ccrud_RS11255 400cc5045109c92ca3d0bfc14f428364 118 PANTHER PTHR40077 12 110 3.0E-17 T 14-09-2016 ccrud_RS11255 400cc5045109c92ca3d0bfc14f428364 118 Pfam PF12823 Domain of unknown function (DUF3817) 19 107 1.1E-26 T 14-09-2016 IPR023845 Domain of unknown function DUF3817, transmembrane ccrud_RS12700 d7625ec711a55cbf40cac2bafe47b1c9 340 PANTHER PTHR30349:SF25 32 339 1.3E-65 T 14-09-2016 ccrud_RS12700 d7625ec711a55cbf40cac2bafe47b1c9 340 PIRSF PIRSF017082 16 340 1.5E-83 T 14-09-2016 IPR005064 Bordetella uptake gene GO:0030288 ccrud_RS12700 d7625ec711a55cbf40cac2bafe47b1c9 340 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 77 340 1.1E-31 T 14-09-2016 IPR005064 Bordetella uptake gene GO:0030288 ccrud_RS12700 d7625ec711a55cbf40cac2bafe47b1c9 340 SUPERFAMILY SSF53850 120 304 7.6E-8 T 14-09-2016 ccrud_RS12700 d7625ec711a55cbf40cac2bafe47b1c9 340 PANTHER PTHR30349 32 339 1.3E-65 T 14-09-2016 ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 SUPERFAMILY SSF52096 27 315 1.68E-71 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 Pfam PF00378 Enoyl-CoA hydratase/isomerase 139 314 4.1E-40 T 14-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 Pfam PF00378 Enoyl-CoA hydratase/isomerase 39 111 8.2E-11 T 14-09-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 156 176 - T 14-09-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 Gene3D G3DSA:1.10.12.10 258 307 1.4E-28 T 14-09-2016 IPR014748 Crontonase, C-terminal ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 Gene3D G3DSA:3.90.226.10 30 255 1.4E-64 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 PANTHER PTHR11941:SF20 128 312 4.7E-145 T 14-09-2016 ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 PANTHER PTHR11941:SF20 12 110 4.7E-145 T 14-09-2016 ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 TIGRFAM TIGR01929 menB: naphthoate synthase 24 315 1.2E-124 T 14-09-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 Hamap MF_01934 1,4-dihydroxy-2-naphthoyl-CoA synthase [menB]. 15 318 52.022 T 14-09-2016 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB GO:0008935|GO:0009234 KEGG: 00130+4.1.3.36|MetaCyc: PWY-5837|UniPathway: UPA00079|UniPathway: UPA01057 ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 PANTHER PTHR11941 128 312 4.7E-145 T 14-09-2016 ccrud_RS02410 ad937171770b9a114493c93c6e2b2664 319 PANTHER PTHR11941 12 110 4.7E-145 T 14-09-2016 ccrud_RS08750 fe953b53e6f934243db7d6b2fb96c067 374 Gene3D G3DSA:3.30.565.10 263 370 8.1E-9 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS08750 fe953b53e6f934243db7d6b2fb96c067 374 Pfam PF07730 Histidine kinase 177 241 1.7E-17 T 14-09-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 ccrud_RS08750 fe953b53e6f934243db7d6b2fb96c067 374 PIRSF PIRSF037434 1 374 1.3E-127 T 14-09-2016 IPR017205 Signal transduction histidine kinase, ChrS ccrud_RS08750 fe953b53e6f934243db7d6b2fb96c067 374 SUPERFAMILY SSF55874 262 369 8.25E-16 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS08750 fe953b53e6f934243db7d6b2fb96c067 374 PANTHER PTHR24421 67 369 2.1E-57 T 14-09-2016 ccrud_RS08750 fe953b53e6f934243db7d6b2fb96c067 374 PANTHER PTHR24421:SF24 67 369 2.1E-57 T 14-09-2016 ccrud_RS08750 fe953b53e6f934243db7d6b2fb96c067 374 SMART SM00387 278 372 0.005 T 14-09-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain ccrud_RS04435 07635609df1014fec5e102587ff10e12 137 SUPERFAMILY SSF89623 3 136 3.66E-31 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS04435 07635609df1014fec5e102587ff10e12 137 PANTHER PTHR30345 1 130 1.2E-33 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS04435 07635609df1014fec5e102587ff10e12 137 PIRSF PIRSF005384 3 137 2.1E-30 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS04435 07635609df1014fec5e102587ff10e12 137 Pfam PF02502 Ribose/Galactose Isomerase 5 134 8.8E-32 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS04435 07635609df1014fec5e102587ff10e12 137 Gene3D G3DSA:3.40.1400.10 3 134 2.1E-34 T 14-09-2016 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26|UniPathway: UPA00702 ccrud_RS13455 5d1518e9746328702eab10b61597345a 494 Gene3D G3DSA:3.40.50.1010 3 167 1.3E-21 T 14-09-2016 IPR029060 PIN domain-like ccrud_RS13455 5d1518e9746328702eab10b61597345a 494 Pfam PF01936 NYN domain 4 166 2.0E-17 T 14-09-2016 IPR021139 NYN domain, limkain-b1-type ccrud_RS01850 a0bd5dbf114c2121947f70ba9f6ba048 326 SUPERFAMILY SSF56059 108 295 1.57E-24 T 14-09-2016 ccrud_RS01850 a0bd5dbf114c2121947f70ba9f6ba048 326 Gene3D G3DSA:3.30.1490.20 116 186 1.2E-14 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS01850 a0bd5dbf114c2121947f70ba9f6ba048 326 Pfam PF02655 ATP-grasp domain 114 269 3.3E-17 T 14-09-2016 IPR003806 ATP-grasp fold, DUF201-type GO:0005524|GO:0046872 ccrud_RS01850 a0bd5dbf114c2121947f70ba9f6ba048 326 PANTHER PTHR23132 41 289 7.2E-14 T 14-09-2016 ccrud_RS01850 a0bd5dbf114c2121947f70ba9f6ba048 326 Gene3D G3DSA:3.40.50.20 1 115 2.1E-35 T 14-09-2016 IPR016185 Pre-ATP-grasp domain ccrud_RS01850 a0bd5dbf114c2121947f70ba9f6ba048 326 Gene3D G3DSA:3.30.470.20 188 300 4.9E-26 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS05095 f5cd0cc986caa6e07b6525fe764e5c94 457 PANTHER PTHR30267:SF3 5 456 4.2E-162 T 14-09-2016 ccrud_RS05095 f5cd0cc986caa6e07b6525fe764e5c94 457 Gene3D G3DSA:3.40.50.300 50 240 5.4E-24 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05095 f5cd0cc986caa6e07b6525fe764e5c94 457 SUPERFAMILY SSF52540 42 321 7.08E-26 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05095 f5cd0cc986caa6e07b6525fe764e5c94 457 PANTHER PTHR30267 5 456 4.2E-162 T 14-09-2016 ccrud_RS03785 58333441882a71b41294eb9256906290 353 PANTHER PTHR16254 18 302 2.7E-64 T 14-09-2016 ccrud_RS03785 58333441882a71b41294eb9256906290 353 Pfam PF07885 Ion channel 45 121 3.1E-15 T 14-09-2016 IPR013099 Potassium channel domain ccrud_RS03785 58333441882a71b41294eb9256906290 353 SUPERFAMILY SSF81324 30 161 3.01E-24 T 14-09-2016 ccrud_RS03785 58333441882a71b41294eb9256906290 353 Gene3D G3DSA:1.10.287.70 35 126 1.6E-16 T 14-09-2016 ccrud_RS03785 58333441882a71b41294eb9256906290 353 Gene3D G3DSA:3.40.50.720 133 271 9.2E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03785 58333441882a71b41294eb9256906290 353 SUPERFAMILY SSF51735 137 281 1.57E-25 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03785 58333441882a71b41294eb9256906290 353 Pfam PF02254 TrkA-N domain 142 258 3.4E-24 T 14-09-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 ccrud_RS03785 58333441882a71b41294eb9256906290 353 PANTHER PTHR16254:SF21 18 302 2.7E-64 T 14-09-2016 ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 Pfam PF01926 50S ribosome-binding GTPase 283 406 4.8E-20 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 SUPERFAMILY SSF54980 453 501 3.84E-5 T 14-09-2016 IPR009022 Elongation factor G, III-V domain ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 Hamap MF_00900 GTPase HflX [hflX]. 104 476 46.343 T 14-09-2016 IPR016496 GTPase HflX GO:0005525 ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 Pfam PF13167 GTP-binding GTPase N-terminal 102 189 1.9E-34 T 14-09-2016 IPR025121 GTPase HflX, N-terminal ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 PANTHER PTHR10229 55 491 2.8E-161 T 14-09-2016 IPR016496 GTPase HflX GO:0005525 ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 SUPERFAMILY SSF52540 276 450 9.88E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 Gene3D G3DSA:3.40.50.300 282 444 1.4E-35 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 284 304 1.7E-6 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 351 369 1.7E-6 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 85 444 4.5E-126 T 14-09-2016 IPR016496 GTPase HflX GO:0005525 ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 PIRSF PIRSF006809 77 507 4.5E-153 T 14-09-2016 IPR016496 GTPase HflX GO:0005525 ccrud_RS08380 a166f5e2b3ed23a0a028a02434873714 509 Pfam PF16360 GTP-binding GTPase Middle Region 191 276 2.6E-24 T 14-09-2016 IPR032305 GTP-binding protein, middle domain ccrud_RS05130 54bc95dafa96ecdc0b7254f6cc65d4e5 158 SMART SM00347 34 133 0.0044 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS05130 54bc95dafa96ecdc0b7254f6cc65d4e5 158 SUPERFAMILY SSF46785 15 148 3.5E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05130 54bc95dafa96ecdc0b7254f6cc65d4e5 158 Pfam PF12802 MarR family 44 94 2.9E-7 T 14-09-2016 ccrud_RS05130 54bc95dafa96ecdc0b7254f6cc65d4e5 158 Gene3D G3DSA:1.10.10.10 38 149 3.3E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11580 d37c5da286010c6e16470eb115d19d16 502 PANTHER PTHR21432 1 501 2.3E-230 T 14-09-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 ccrud_RS11580 d37c5da286010c6e16470eb115d19d16 502 Gene3D G3DSA:3.40.810.20 228 496 6.4E-71 T 14-09-2016 ccrud_RS11580 d37c5da286010c6e16470eb115d19d16 502 PANTHER PTHR21432:SF10 1 501 2.3E-230 T 14-09-2016 ccrud_RS11580 d37c5da286010c6e16470eb115d19d16 502 Gene3D G3DSA:3.40.1080.10 10 225 1.8E-48 T 14-09-2016 ccrud_RS11580 d37c5da286010c6e16470eb115d19d16 502 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 11 500 8.0E-227 T 14-09-2016 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 ccrud_RS11580 d37c5da286010c6e16470eb115d19d16 502 SUPERFAMILY SSF100950 3 226 1.22E-72 T 14-09-2016 ccrud_RS11580 d37c5da286010c6e16470eb115d19d16 502 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 333 466 3.5E-37 T 14-09-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain ccrud_RS11580 d37c5da286010c6e16470eb115d19d16 502 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 9 220 9.1E-38 T 14-09-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 ccrud_RS11580 d37c5da286010c6e16470eb115d19d16 502 SUPERFAMILY SSF100950 229 501 1.59E-74 T 14-09-2016 ccrud_RS08445 b45a357fbf017126f05318600198aa95 315 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 68 165 2.4E-16 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 ccrud_RS08445 b45a357fbf017126f05318600198aa95 315 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 88 271 2.3E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08445 b45a357fbf017126f05318600198aa95 315 Gene3D G3DSA:1.10.3720.10 65 271 7.4E-43 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08445 b45a357fbf017126f05318600198aa95 315 SUPERFAMILY SSF161098 67 256 9.42E-39 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08445 b45a357fbf017126f05318600198aa95 315 PANTHER PTHR30614 16 276 5.4E-52 T 14-09-2016 ccrud_RS02110 724224832ab34d57765a741f4fcf9702 426 Hamap MF_01695 D-inositol-3-phosphate glycosyltransferase [mshA]. 1 410 47.811 T 14-09-2016 IPR017814 Mycothiol biosynthesis protein, MshA GO:0008375|GO:0010125 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 ccrud_RS02110 724224832ab34d57765a741f4fcf9702 426 Pfam PF00534 Glycosyl transferases group 1 211 383 1.3E-37 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 ccrud_RS02110 724224832ab34d57765a741f4fcf9702 426 Pfam PF13439 Glycosyltransferase Family 4 22 200 1.7E-30 T 14-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain ccrud_RS02110 724224832ab34d57765a741f4fcf9702 426 SUPERFAMILY SSF53756 1 406 7.33E-89 T 14-09-2016 ccrud_RS02110 724224832ab34d57765a741f4fcf9702 426 PANTHER PTHR12526:SF185 2 406 3.0E-138 T 14-09-2016 ccrud_RS02110 724224832ab34d57765a741f4fcf9702 426 Gene3D G3DSA:3.40.50.2000 181 384 1.3E-44 T 14-09-2016 ccrud_RS02110 724224832ab34d57765a741f4fcf9702 426 TIGRFAM TIGR03449 mycothiol_MshA: D-inositol-3-phosphate glycosyltransferase 2 407 5.1E-215 T 14-09-2016 IPR017814 Mycothiol biosynthesis protein, MshA GO:0008375|GO:0010125 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 ccrud_RS02110 724224832ab34d57765a741f4fcf9702 426 PANTHER PTHR12526 2 406 3.0E-138 T 14-09-2016 ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 SUPERFAMILY SSF103473 247 497 4.58E-11 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 SUPERFAMILY SSF103473 25 226 2.75E-24 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 PANTHER PTHR11654:SF119 287 508 1.9E-97 T 14-09-2016 ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 Pfam PF00854 POT family 110 463 5.1E-46 T 14-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 TIGRFAM TIGR00924 yjdL_sub1_fam: amino acid/peptide transporter (Peptide:H+ symporter) 29 500 2.4E-113 T 14-09-2016 IPR005279 Dipeptide/tripeptide permease GO:0015197|GO:0015833|GO:0016020 ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 PANTHER PTHR11654:SF119 22 243 1.9E-97 T 14-09-2016 ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 PANTHER PTHR11654 22 243 1.9E-97 T 14-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 ProSitePatterns PS01023 PTR2 family proton/oligopeptide symporters signature 2. 172 184 - T 14-09-2016 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site GO:0005215|GO:0006857|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 PANTHER PTHR11654 287 508 1.9E-97 T 14-09-2016 IPR000109 Proton-dependent oligopeptide transporter family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 Gene3D G3DSA:1.20.1250.20 305 494 1.3E-7 T 14-09-2016 ccrud_RS13770 2a66a0b7392fea6c1f26bee3b26ff2ce 508 Gene3D G3DSA:1.20.1250.20 49 225 6.8E-17 T 14-09-2016 ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 SUPERFAMILY SSF52540 1 179 4.65E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 Pfam PF00406 Adenylate kinase 5 158 1.6E-51 T 14-09-2016 ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 PRINTS PR00094 Adenylate kinase signature 129 144 2.7E-31 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 PRINTS PR00094 Adenylate kinase signature 4 17 2.7E-31 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 PRINTS PR00094 Adenylate kinase signature 32 46 2.7E-31 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 PRINTS PR00094 Adenylate kinase signature 146 160 2.7E-31 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 PRINTS PR00094 Adenylate kinase signature 81 97 2.7E-31 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 Hamap MF_00235 Adenylate kinase [adk]. 1 180 42.628 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 Gene3D G3DSA:3.40.50.300 1 177 1.5E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02835 daab1f7a8b0465ca06fc2dc65e64ff53 181 PANTHER PTHR23359 1 179 2.6E-73 T 14-09-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 Gene3D G3DSA:3.40.50.880 174 387 1.3E-63 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 21 386 1.4E-142 T 14-09-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 SUPERFAMILY SSF52021 20 159 1.83E-52 T 14-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 239 253 1.8E-31 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 312 323 1.8E-31 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 270 286 1.8E-31 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 287 304 1.8E-31 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 200 214 1.8E-31 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 SMART SM01097 19 151 1.8E-79 T 14-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 Gene3D G3DSA:3.50.30.20 20 162 2.9E-55 T 14-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00097 Anthranilate synthase component II signature 270 281 1.9E-5 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00097 Anthranilate synthase component II signature 242 251 1.9E-5 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00097 Anthranilate synthase component II signature 361 374 1.9E-5 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 SUPERFAMILY SSF52317 195 387 3.52E-51 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 21 150 5.1E-49 T 14-09-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 19 390 43.32 T 14-09-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00096 Glutamine amidotransferase superfamily signature 242 251 9.9E-11 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00096 Glutamine amidotransferase superfamily signature 361 374 9.9E-11 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PRINTS PR00096 Glutamine amidotransferase superfamily signature 270 281 9.9E-11 T 14-09-2016 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 Pfam PF00117 Glutamine amidotransferase class-I 204 384 4.1E-41 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 ccrud_RS07785 995f2a832b7ca36f538a3d1f21fda1ce 395 PANTHER PTHR11405 20 386 4.2E-175 T 14-09-2016 ccrud_RS05745 34f2606afd57f825a5c62ad4bdf0c3cb 445 Gene3D G3DSA:1.20.1250.20 245 437 6.7E-15 T 14-09-2016 ccrud_RS05745 34f2606afd57f825a5c62ad4bdf0c3cb 445 SUPERFAMILY SSF103473 14 438 3.92E-42 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS05745 34f2606afd57f825a5c62ad4bdf0c3cb 445 PANTHER PTHR23515 11 438 2.3E-81 T 14-09-2016 ccrud_RS05745 34f2606afd57f825a5c62ad4bdf0c3cb 445 PANTHER PTHR23515:SF6 11 438 2.3E-81 T 14-09-2016 ccrud_RS05745 34f2606afd57f825a5c62ad4bdf0c3cb 445 Pfam PF07690 Major Facilitator Superfamily 37 404 2.7E-13 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS05745 34f2606afd57f825a5c62ad4bdf0c3cb 445 Gene3D G3DSA:1.20.1250.20 24 234 1.8E-13 T 14-09-2016 ccrud_RS11385 1075ceb56ed905ba61d256a796032a4e 249 SUPERFAMILY SSF56112 10 240 7.87E-33 T 14-09-2016 IPR011009 Protein kinase-like domain ccrud_RS11385 1075ceb56ed905ba61d256a796032a4e 249 PIRSF PIRSF006221 2 249 4.7E-65 T 14-09-2016 IPR016477 Fructosamine/Ketosamine-3-kinase ccrud_RS11385 1075ceb56ed905ba61d256a796032a4e 249 Pfam PF03881 Fructosamine kinase 46 239 7.6E-34 T 14-09-2016 IPR016477 Fructosamine/Ketosamine-3-kinase ccrud_RS11385 1075ceb56ed905ba61d256a796032a4e 249 PANTHER PTHR12149:SF8 81 249 4.0E-24 T 14-09-2016 ccrud_RS11385 1075ceb56ed905ba61d256a796032a4e 249 PANTHER PTHR12149 81 249 4.0E-24 T 14-09-2016 ccrud_RS11385 1075ceb56ed905ba61d256a796032a4e 249 Gene3D G3DSA:3.90.1200.10 47 216 4.4E-14 T 14-09-2016 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 37 62 2.1E-42 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 109 129 2.1E-42 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 88 108 2.1E-42 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 155 181 2.1E-42 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 67 82 2.1E-42 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 196 218 2.1E-42 T 14-09-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 SUPERFAMILY SSF50022 15 171 6.81E-46 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 PANTHER PTHR21266:SF30 1 384 2.6E-125 T 14-09-2016 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 202 392 1.8E-15 T 14-09-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 PANTHER PTHR21266 1 384 2.6E-125 T 14-09-2016 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 TIGRFAM TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit 15 448 1.7E-259 T 14-09-2016 IPR017639 Benzoate 1,2-dioxygenase, large subunit ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 Pfam PF00355 Rieske [2Fe-2S] domain 52 136 9.5E-22 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 Gene3D G3DSA:3.90.380.10 153 455 4.5E-88 T 14-09-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 Gene3D G3DSA:2.102.10.10 52 152 1.2E-21 T 14-09-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 ccrud_RS10705 bbcaae66f0e6900f22b49a9240e80bad 498 SUPERFAMILY SSF55961 171 450 2.9E-68 T 14-09-2016 ccrud_RS07450 1a05dcc1c85340003dd960ceb7f7426f 618 PANTHER PTHR23408 215 487 3.0E-68 T 14-09-2016 ccrud_RS07450 1a05dcc1c85340003dd960ceb7f7426f 618 Gene3D G3DSA:3.40.50.280 486 617 9.1E-33 T 14-09-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 ccrud_RS07450 1a05dcc1c85340003dd960ceb7f7426f 618 SUPERFAMILY SSF51703 31 522 3.18E-129 T 14-09-2016 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0008152|GO:0031419 ccrud_RS07450 1a05dcc1c85340003dd960ceb7f7426f 618 PANTHER PTHR23408:SF13 215 487 3.0E-68 T 14-09-2016 ccrud_RS07450 1a05dcc1c85340003dd960ceb7f7426f 618 Pfam PF01642 Methylmalonyl-CoA mutase 50 527 3.5E-113 T 14-09-2016 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0008152|GO:0016866|GO:0031419 ccrud_RS07450 1a05dcc1c85340003dd960ceb7f7426f 618 Gene3D G3DSA:3.20.20.240 50 480 6.6E-116 T 14-09-2016 IPR014348 Cobalamin (vitamin B12)-dependent enzyme, catalytic subdomain GO:0008152|GO:0016866|GO:0031419 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 Gene3D G3DSA:3.40.50.2300 181 337 5.4E-33 T 14-09-2016 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 PANTHER PTHR30146:SF3 7 198 9.0E-91 T 14-09-2016 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 PANTHER PTHR30146:SF3 216 343 9.0E-91 T 14-09-2016 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 Pfam PF00356 Bacterial regulatory proteins, lacI family 9 51 7.4E-7 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 SUPERFAMILY SSF47413 8 65 1.69E-10 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 Gene3D G3DSA:1.10.260.40 9 59 4.9E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 SUPERFAMILY SSF53822 82 345 6.67E-39 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 Pfam PF13377 Periplasmic binding protein-like domain 179 354 1.7E-22 T 14-09-2016 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 PANTHER PTHR30146 7 198 9.0E-91 T 14-09-2016 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 PANTHER PTHR30146 216 343 9.0E-91 T 14-09-2016 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 Gene3D G3DSA:3.40.50.2300 60 180 3.7E-21 T 14-09-2016 ccrud_RS11865 963cccb00d8d4253a676b452b34b6dcf 358 SMART SM00354 9 78 4.2E-9 T 14-09-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 22 75 8.4E-11 T 14-09-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 113 259 3.3E-50 T 14-09-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 PANTHER PTHR32125 1 86 9.9E-85 T 14-09-2016 ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 PANTHER PTHR32125:SF1 146 266 9.9E-85 T 14-09-2016 ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 Gene3D G3DSA:1.10.1270.20 199 275 8.8E-30 T 14-09-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 PANTHER PTHR32125 146 266 9.9E-85 T 14-09-2016 ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 PANTHER PTHR32125:SF1 1 86 9.9E-85 T 14-09-2016 ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 SUPERFAMILY SSF75217 2 79 4.58E-84 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 SUPERFAMILY SSF75217 115 274 4.58E-84 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 Gene3D G3DSA:3.40.1280.10 115 198 5.6E-63 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 Gene3D G3DSA:3.40.1280.10 2 79 5.6E-63 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ccrud_RS08930 5a4485cc9ae260515a0c19c230b8dae4 279 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 279 91.776 T 14-09-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 ccrud_RS04080 c3426e2077d70c54bda2cda7af0cbfda 376 PIRSF PIRSF000525 5 370 5.7E-72 T 14-09-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 ccrud_RS04080 c3426e2077d70c54bda2cda7af0cbfda 376 SUPERFAMILY SSF53383 15 369 3.05E-72 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS04080 c3426e2077d70c54bda2cda7af0cbfda 376 TIGRFAM TIGR01366 serC_3: putative phosphoserine aminotransferase 13 371 2.8E-219 T 14-09-2016 IPR006272 Phosphoserine aminotransferase, Mycobacterial-type GO:0004648|GO:0006564|GO:0009058 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 ccrud_RS04080 c3426e2077d70c54bda2cda7af0cbfda 376 PANTHER PTHR21152 13 370 2.7E-137 T 14-09-2016 ccrud_RS04080 c3426e2077d70c54bda2cda7af0cbfda 376 Gene3D G3DSA:3.90.1150.10 267 369 5.5E-6 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS04080 c3426e2077d70c54bda2cda7af0cbfda 376 PANTHER PTHR21152:SF20 13 370 2.7E-137 T 14-09-2016 ccrud_RS04080 c3426e2077d70c54bda2cda7af0cbfda 376 Gene3D G3DSA:3.40.640.10 21 266 5.9E-49 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS04080 c3426e2077d70c54bda2cda7af0cbfda 376 Pfam PF00266 Aminotransferase class-V 140 331 6.1E-13 T 14-09-2016 IPR000192 Aminotransferase class V domain ccrud_RS02280 11ea5e2bb222505781eaf4729028cb7c 202 Gene3D G3DSA:3.40.50.1240 5 198 1.8E-32 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS02280 11ea5e2bb222505781eaf4729028cb7c 202 SUPERFAMILY SSF53254 4 198 1.1E-36 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS02280 11ea5e2bb222505781eaf4729028cb7c 202 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 6 196 1.0E-35 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS02280 11ea5e2bb222505781eaf4729028cb7c 202 PANTHER PTHR23029 4 202 2.7E-48 T 14-09-2016 ccrud_RS02280 11ea5e2bb222505781eaf4729028cb7c 202 PANTHER PTHR23029:SF35 4 202 2.7E-48 T 14-09-2016 ccrud_RS02280 11ea5e2bb222505781eaf4729028cb7c 202 SMART SM00855 5 157 1.4E-15 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS09035 bbd3f22a9ba7bceeadf49cab332932ae 231 Gene3D G3DSA:3.40.50.150 95 183 6.0E-11 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS09035 bbd3f22a9ba7bceeadf49cab332932ae 231 Pfam PF01555 DNA methylase 39 88 1.5E-10 T 14-09-2016 IPR002941 DNA methylase N-4/N-6 GO:0003677|GO:0006306|GO:0008170 ccrud_RS09035 bbd3f22a9ba7bceeadf49cab332932ae 231 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 49 67 8.9E-9 T 14-09-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 ccrud_RS09035 bbd3f22a9ba7bceeadf49cab332932ae 231 PRINTS PR00508 S21 class N4 adenine-specific DNA methyltransferase signature 72 92 8.9E-9 T 14-09-2016 IPR001091 Restriction/modification DNA-methylase GO:0003677|GO:0006306|GO:0008170 ccrud_RS09035 bbd3f22a9ba7bceeadf49cab332932ae 231 SUPERFAMILY SSF53335 32 189 1.33E-16 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS09035 bbd3f22a9ba7bceeadf49cab332932ae 231 Gene3D G3DSA:3.40.50.150 39 92 3.9E-15 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS09035 bbd3f22a9ba7bceeadf49cab332932ae 231 ProSitePatterns PS00093 N-4 cytosine-specific DNA methylases signature. 124 129 - T 14-09-2016 IPR017985 DNA methylase, N-4 cytosine-specific, conserved site GO:0003677|GO:0015667|GO:0090124 KEGG: 00860+2.1.1.11|MetaCyc: PWY-5531|MetaCyc: PWY-7159 ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 Pfam PF00005 ABC transporter 24 197 3.1E-20 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 Pfam PF00005 ABC transporter 353 482 4.8E-22 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 SUPERFAMILY SSF52540 340 527 7.91E-45 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 Pfam PF12848 ABC transporter 242 313 3.8E-9 T 14-09-2016 IPR032781 ABC-transporter extension domain ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 SUPERFAMILY SSF52540 24 238 1.28E-37 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 SMART SM00382 28 241 5.8E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 SMART SM00382 360 528 1.9E-9 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 Gene3D G3DSA:3.40.50.300 336 528 1.3E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 Gene3D G3DSA:3.40.50.300 24 101 2.7E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 Gene3D G3DSA:3.40.50.300 138 288 2.7E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 ProSitePatterns PS00211 ABC transporters family signature. 454 468 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 PANTHER PTHR19211 1 541 1.4E-285 T 14-09-2016 ccrud_RS07545 64498242b345f961ad28657fa73d166d 543 PANTHER PTHR19211:SF53 1 541 1.4E-285 T 14-09-2016 ccrud_RS10630 61957aea5318ae2330418f2ddac69a92 362 Gene3D G3DSA:3.40.50.1110 149 362 6.7E-12 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain ccrud_RS10630 61957aea5318ae2330418f2ddac69a92 362 SUPERFAMILY SSF52266 159 362 1.53E-22 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain ccrud_RS10630 61957aea5318ae2330418f2ddac69a92 362 Pfam PF14606 GDSL-like Lipase/Acylhydrolase family 162 262 4.2E-17 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain ccrud_RS01720 7f783e287b2094555f92d28f2e59d88d 450 SUPERFAMILY SSF51182 3 175 1.86E-49 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS01720 7f783e287b2094555f92d28f2e59d88d 450 PANTHER PTHR10491 173 450 3.9E-62 T 14-09-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family ccrud_RS01720 7f783e287b2094555f92d28f2e59d88d 450 Pfam PF04321 RmlD substrate binding domain 181 449 7.4E-69 T 14-09-2016 IPR029903 RmlD-like substrate binding domain ccrud_RS01720 7f783e287b2094555f92d28f2e59d88d 450 SUPERFAMILY SSF51735 181 449 1.41E-66 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01720 7f783e287b2094555f92d28f2e59d88d 450 Gene3D G3DSA:2.60.120.10 6 174 2.8E-48 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS01720 7f783e287b2094555f92d28f2e59d88d 450 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 11 171 9.8E-38 T 14-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 ccrud_RS01720 7f783e287b2094555f92d28f2e59d88d 450 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 11 180 2.0E-94 T 14-09-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 ccrud_RS01720 7f783e287b2094555f92d28f2e59d88d 450 Gene3D G3DSA:3.40.50.720 181 395 5.2E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS01720 7f783e287b2094555f92d28f2e59d88d 450 PANTHER PTHR10491:SF4 173 450 3.9E-62 T 14-09-2016 ccrud_RS04455 cd638cd113ebb7e001224cd04cc28faf 433 PANTHER PTHR33362 4 433 3.6E-132 T 14-09-2016 ccrud_RS04455 cd638cd113ebb7e001224cd04cc28faf 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 429 2.8E-122 T 14-09-2016 IPR004681 TRAP transporter permease protein GO:0016021 ccrud_RS04455 cd638cd113ebb7e001224cd04cc28faf 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 424 1.4E-110 T 14-09-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ccrud_RS04455 cd638cd113ebb7e001224cd04cc28faf 433 PIRSF PIRSF006066 1 433 5.2E-136 T 14-09-2016 IPR004681 TRAP transporter permease protein GO:0016021 ccrud_RS04455 cd638cd113ebb7e001224cd04cc28faf 433 PANTHER PTHR33362:SF2 4 433 3.6E-132 T 14-09-2016 ccrud_RS11745 634bc833778ff6ed439972346c99cc35 235 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 230 7.7E-25 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS11745 634bc833778ff6ed439972346c99cc35 235 Gene3D G3DSA:1.10.10.10 133 233 3.1E-34 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11745 634bc833778ff6ed439972346c99cc35 235 Gene3D G3DSA:3.40.50.2300 4 132 5.2E-39 T 14-09-2016 ccrud_RS11745 634bc833778ff6ed439972346c99cc35 235 SMART SM00448 9 120 5.9E-44 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS11745 634bc833778ff6ed439972346c99cc35 235 SMART SM00862 156 230 2.0E-25 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS11745 634bc833778ff6ed439972346c99cc35 235 Pfam PF00072 Response regulator receiver domain 11 120 4.0E-30 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS11745 634bc833778ff6ed439972346c99cc35 235 PANTHER PTHR26402:SF602 9 235 1.3E-117 T 14-09-2016 ccrud_RS11745 634bc833778ff6ed439972346c99cc35 235 SUPERFAMILY SSF52172 8 182 1.12E-40 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS11745 634bc833778ff6ed439972346c99cc35 235 PANTHER PTHR26402 9 235 1.3E-117 T 14-09-2016 ccrud_RS09660 c94fd2729c0ff6f4665f775c0260824d 355 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 12 344 33.926 T 14-09-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 ccrud_RS09660 c94fd2729c0ff6f4665f775c0260824d 355 PANTHER PTHR21712 10 342 1.5E-122 T 14-09-2016 ccrud_RS09660 c94fd2729c0ff6f4665f775c0260824d 355 Gene3D G3DSA:1.10.1610.10 5 72 3.2E-26 T 14-09-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 ccrud_RS09660 c94fd2729c0ff6f4665f775c0260824d 355 PANTHER PTHR21712:SF33 10 342 1.5E-122 T 14-09-2016 ccrud_RS09660 c94fd2729c0ff6f4665f775c0260824d 355 Pfam PF02277 Phosphoribosyltransferase 11 342 1.4E-122 T 14-09-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 ccrud_RS09660 c94fd2729c0ff6f4665f775c0260824d 355 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 14 342 3.8E-114 T 14-09-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 ccrud_RS09660 c94fd2729c0ff6f4665f775c0260824d 355 SUPERFAMILY SSF52733 5 343 6.8E-106 T 14-09-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 ccrud_RS09660 c94fd2729c0ff6f4665f775c0260824d 355 Gene3D G3DSA:3.40.50.10210 73 325 3.0E-98 T 14-09-2016 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 Pfam PF02803 Thiolase, C-terminal domain 283 406 6.6E-44 T 14-09-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 SUPERFAMILY SSF53901 5 282 2.25E-70 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 ProSitePatterns PS00099 Thiolases active site. 388 401 - T 14-09-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 405 1.7E-127 T 14-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 Gene3D G3DSA:3.40.47.10 289 406 9.7E-55 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 Gene3D G3DSA:3.40.47.10 163 200 9.7E-55 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 PANTHER PTHR18919:SF91 1 408 2.5E-151 T 14-09-2016 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 Gene3D G3DSA:3.40.47.10 5 125 3.5E-58 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 Gene3D G3DSA:3.40.47.10 201 287 3.5E-58 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 Pfam PF00108 Thiolase, N-terminal domain 6 274 5.9E-65 T 14-09-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 SUPERFAMILY SSF53901 284 405 3.79E-42 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 PANTHER PTHR18919 1 408 2.5E-151 T 14-09-2016 ccrud_RS10650 342fe53232d89bcdc09f2c8cde4f66d9 408 PIRSF PIRSF000429 1 408 8.7E-125 T 14-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 ccrud_RS00255 0d46d77efd38653229384abafd9db557 490 Gene3D G3DSA:3.40.605.10 13 271 4.0E-94 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS00255 0d46d77efd38653229384abafd9db557 490 Gene3D G3DSA:3.40.309.10 272 457 7.6E-68 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS00255 0d46d77efd38653229384abafd9db557 490 SUPERFAMILY SSF53720 11 485 5.11E-166 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS00255 0d46d77efd38653229384abafd9db557 490 Pfam PF00171 Aldehyde dehydrogenase family 22 481 8.2E-167 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS00255 0d46d77efd38653229384abafd9db557 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 258 265 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS00255 0d46d77efd38653229384abafd9db557 490 PANTHER PTHR11699 14 482 3.4E-235 T 14-09-2016 ccrud_RS00255 0d46d77efd38653229384abafd9db557 490 PANTHER PTHR11699:SF49 14 482 3.4E-235 T 14-09-2016 ccrud_RS12775 fd1c0fae66f0d21371488af854fddf5e 272 Pfam PF00881 Nitroreductase family 30 187 3.4E-19 T 14-09-2016 IPR029479 Nitroreductase ccrud_RS12775 fd1c0fae66f0d21371488af854fddf5e 272 PANTHER PTHR23026 3 215 5.6E-57 T 14-09-2016 ccrud_RS12775 fd1c0fae66f0d21371488af854fddf5e 272 Gene3D G3DSA:3.40.109.10 24 270 7.9E-63 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 ccrud_RS12775 fd1c0fae66f0d21371488af854fddf5e 272 PIRSF PIRSF005426 22 272 2.3E-78 T 14-09-2016 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 ccrud_RS12775 fd1c0fae66f0d21371488af854fddf5e 272 PANTHER PTHR23026:SF98 3 215 5.6E-57 T 14-09-2016 ccrud_RS12775 fd1c0fae66f0d21371488af854fddf5e 272 SUPERFAMILY SSF55469 23 271 8.11E-60 T 14-09-2016 IPR000415 Nitroreductase-like GO:0016491 ccrud_RS07325 626354fadba1b5eceab28eeddb2a4c98 190 Gene3D G3DSA:3.30.530.20 74 116 4.7E-4 T 14-09-2016 IPR023393 START-like domain ccrud_RS07325 626354fadba1b5eceab28eeddb2a4c98 190 SUPERFAMILY SSF55961 89 178 6.87E-10 T 14-09-2016 ccrud_RS06120 4c2b60a53c480d36860cd94e3b51ac2a 338 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 3 330 44.367 T 14-09-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06120 4c2b60a53c480d36860cd94e3b51ac2a 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 185 328 1.1E-58 T 14-09-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06120 4c2b60a53c480d36860cd94e3b51ac2a 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 16 330 3.0E-121 T 14-09-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06120 4c2b60a53c480d36860cd94e3b51ac2a 338 PANTHER PTHR21371 7 338 5.6E-169 T 14-09-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06120 4c2b60a53c480d36860cd94e3b51ac2a 338 SUPERFAMILY SSF48179 185 330 1.33E-64 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS06120 4c2b60a53c480d36860cd94e3b51ac2a 338 SUPERFAMILY SSF51735 4 184 1.34E-70 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06120 4c2b60a53c480d36860cd94e3b51ac2a 338 Gene3D G3DSA:1.10.1040.10 31 327 5.9E-108 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS06120 4c2b60a53c480d36860cd94e3b51ac2a 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 16 179 9.2E-74 T 14-09-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS12440 712274246575bb2b0f4e6589b2ca7d55 461 PANTHER PTHR23406:SF3 364 457 3.3E-53 T 14-09-2016 ccrud_RS12440 712274246575bb2b0f4e6589b2ca7d55 461 SUPERFAMILY SSF53659 138 457 4.11E-96 T 14-09-2016 ccrud_RS12440 712274246575bb2b0f4e6589b2ca7d55 461 Pfam PF01515 Phosphate acetyl/butaryl transferase 138 454 1.8E-134 T 14-09-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 ccrud_RS12440 712274246575bb2b0f4e6589b2ca7d55 461 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 153 454 2.5E-114 T 14-09-2016 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 ccrud_RS12440 712274246575bb2b0f4e6589b2ca7d55 461 Gene3D G3DSA:3.40.50.10750 272 430 1.8E-64 T 14-09-2016 ccrud_RS12440 712274246575bb2b0f4e6589b2ca7d55 461 PANTHER PTHR23406 364 457 3.3E-53 T 14-09-2016 ccrud_RS10680 90167cd99ed9e8e134644e54144d625b 230 PANTHER PTHR33711 19 230 1.4E-85 T 14-09-2016 ccrud_RS10680 90167cd99ed9e8e134644e54144d625b 230 Gene3D G3DSA:2.60.130.10 19 230 4.3E-68 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS10680 90167cd99ed9e8e134644e54144d625b 230 PANTHER PTHR33711:SF1 19 230 1.4E-85 T 14-09-2016 ccrud_RS10680 90167cd99ed9e8e134644e54144d625b 230 Pfam PF00775 Dioxygenase 44 223 2.7E-50 T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 ccrud_RS10680 90167cd99ed9e8e134644e54144d625b 230 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 9 39 6.0E-10 T 14-09-2016 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 ccrud_RS10680 90167cd99ed9e8e134644e54144d625b 230 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 14 230 4.5E-112 T 14-09-2016 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 ccrud_RS10680 90167cd99ed9e8e134644e54144d625b 230 SUPERFAMILY SSF49482 15 230 8.9E-66 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS04165 627195be5faae83a332b8a7d631c83a3 252 PANTHER PTHR20854 39 248 7.9E-36 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS04165 627195be5faae83a332b8a7d631c83a3 252 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 79 92 - T 14-09-2016 IPR020583 Inositol monophosphatase, metal-binding site ccrud_RS04165 627195be5faae83a332b8a7d631c83a3 252 SUPERFAMILY SSF56655 6 243 3.14E-52 T 14-09-2016 ccrud_RS04165 627195be5faae83a332b8a7d631c83a3 252 PRINTS PR00377 Inositol monophosphatase superfamily signature 188 212 6.6E-6 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS04165 627195be5faae83a332b8a7d631c83a3 252 PRINTS PR00377 Inositol monophosphatase superfamily signature 57 73 6.6E-6 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS04165 627195be5faae83a332b8a7d631c83a3 252 PRINTS PR00377 Inositol monophosphatase superfamily signature 79 95 6.6E-6 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS04165 627195be5faae83a332b8a7d631c83a3 252 Gene3D G3DSA:3.40.190.80 143 244 2.7E-23 T 14-09-2016 ccrud_RS04165 627195be5faae83a332b8a7d631c83a3 252 Gene3D G3DSA:3.30.540.10 35 142 1.0E-26 T 14-09-2016 ccrud_RS04165 627195be5faae83a332b8a7d631c83a3 252 Pfam PF00459 Inositol monophosphatase family 39 239 5.7E-33 T 14-09-2016 IPR000760 Inositol monophosphatase GO:0046854 ccrud_RS06770 ebfd5cff965838e0af10d7a543abd226 328 Gene3D G3DSA:3.40.50.1000 184 258 1.3E-30 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS06770 ebfd5cff965838e0af10d7a543abd226 328 Gene3D G3DSA:3.40.50.1000 4 81 1.3E-30 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS06770 ebfd5cff965838e0af10d7a543abd226 328 SUPERFAMILY SSF56784 7 257 1.0E-49 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS06770 ebfd5cff965838e0af10d7a543abd226 328 PANTHER PTHR19288 1 268 1.5E-60 T 14-09-2016 ccrud_RS06770 ebfd5cff965838e0af10d7a543abd226 328 Pfam PF13344 Haloacid dehalogenase-like hydrolase 10 109 1.1E-18 T 14-09-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA ccrud_RS06770 ebfd5cff965838e0af10d7a543abd226 328 PANTHER PTHR19288:SF3 1 268 1.5E-60 T 14-09-2016 ccrud_RS06770 ebfd5cff965838e0af10d7a543abd226 328 Gene3D G3DSA:3.40.50.10410 88 183 1.2E-24 T 14-09-2016 IPR023215 Nitrophenylphosphatase-like domain ccrud_RS06770 ebfd5cff965838e0af10d7a543abd226 328 Pfam PF13242 HAD-hyrolase-like 184 256 2.0E-16 T 14-09-2016 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 SUPERFAMILY SSF54292 661 763 1.84E-23 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 SUPERFAMILY SSF48264 24 437 1.03E-73 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 PRINTS PR00359 B-class P450 signature 327 354 8.2E-31 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 PRINTS PR00359 B-class P450 signature 184 199 8.2E-31 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 PRINTS PR00359 B-class P450 signature 121 132 8.2E-31 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 PRINTS PR00359 B-class P450 signature 377 386 8.2E-31 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 PRINTS PR00359 B-class P450 signature 310 321 8.2E-31 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 PRINTS PR00359 B-class P450 signature 167 183 8.2E-31 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 PRINTS PR00359 B-class P450 signature 386 397 8.2E-31 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 PRINTS PR00359 B-class P450 signature 355 370 8.2E-31 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 SUPERFAMILY SSF52343 554 669 8.77E-22 T 14-09-2016 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 Pfam PF00067 Cytochrome P450 307 407 1.0E-18 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 Gene3D G3DSA:1.10.630.10 25 437 8.7E-94 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 Gene3D G3DSA:2.40.30.10 460 554 3.8E-26 T 14-09-2016 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 Gene3D G3DSA:3.10.20.30 667 763 1.3E-24 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 379 388 - T 14-09-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 SUPERFAMILY SSF63380 460 553 3.83E-20 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 719 727 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 PANTHER PTHR11712 1 413 5.8E-64 T 14-09-2016 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 688 759 2.3E-12 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS00530 a10aa1080d4c143fabf1a86590cfd966 771 Gene3D G3DSA:3.40.50.80 556 666 4.8E-21 T 14-09-2016 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 PANTHER PTHR11533:SF163 24 448 1.1E-61 T 14-09-2016 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 SUPERFAMILY SSF55486 225 452 9.82E-52 T 14-09-2016 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 SUPERFAMILY SSF63737 15 214 1.96E-36 T 14-09-2016 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 Gene3D G3DSA:1.10.390.10 321 452 1.3E-20 T 14-09-2016 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 PANTHER PTHR11533 24 448 1.1E-61 T 14-09-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 Pfam PF01433 Peptidase family M1 27 347 1.7E-43 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 324 336 3.6E-15 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 150 165 3.6E-15 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 197 212 3.6E-15 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS01750 789b1477615a828572db413fdb32a13e 454 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 305 320 3.6E-15 T 14-09-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 ccrud_RS04975 f72158267525a9b34227d8b461e526a8 212 PANTHER PTHR35011 3 194 5.7E-14 T 14-09-2016 ccrud_RS04975 f72158267525a9b34227d8b461e526a8 212 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 41 172 1.1E-19 T 14-09-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component ccrud_RS01490 5f1585ce2eaa1724e10ea533c3666637 157 PANTHER PTHR13078 7 153 3.3E-35 T 14-09-2016 ccrud_RS01490 5f1585ce2eaa1724e10ea533c3666637 157 Gene3D G3DSA:3.10.129.10 12 154 2.8E-34 T 14-09-2016 IPR029069 HotDog domain ccrud_RS01490 5f1585ce2eaa1724e10ea533c3666637 157 SUPERFAMILY SSF54637 12 154 6.03E-38 T 14-09-2016 IPR029069 HotDog domain ccrud_RS01490 5f1585ce2eaa1724e10ea533c3666637 157 Pfam PF01575 MaoC like domain 18 126 1.5E-25 T 14-09-2016 IPR002539 MaoC-like domain ccrud_RS05015 97c52755bb7f52c4563d27f646a00184 325 PANTHER PTHR30426 14 322 5.1E-138 T 14-09-2016 ccrud_RS05015 97c52755bb7f52c4563d27f646a00184 325 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 14 299 36.201 T 14-09-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 ccrud_RS05015 97c52755bb7f52c4563d27f646a00184 325 Pfam PF02401 LytB protein 16 295 1.4E-89 T 14-09-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 ccrud_RS05015 97c52755bb7f52c4563d27f646a00184 325 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 15 297 4.7E-95 T 14-09-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 ccrud_RS05475 b2746d19ad14779d0d7f069ac28c8fbf 546 Gene3D G3DSA:3.40.50.1820 12 504 9.8E-122 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05475 b2746d19ad14779d0d7f069ac28c8fbf 546 PANTHER PTHR11559 11 530 5.1E-121 T 14-09-2016 ccrud_RS05475 b2746d19ad14779d0d7f069ac28c8fbf 546 Pfam PF00135 Carboxylesterase family 13 472 1.2E-95 T 14-09-2016 IPR002018 Carboxylesterase, type B ccrud_RS05475 b2746d19ad14779d0d7f069ac28c8fbf 546 SUPERFAMILY SSF53474 13 504 3.55E-109 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05475 b2746d19ad14779d0d7f069ac28c8fbf 546 ProSitePatterns PS00122 Carboxylesterases type-B serine active site. 181 196 - T 14-09-2016 IPR019826 Carboxylesterase type B, active site ccrud_RS00870 ecf4e339e926fb3f5c087272c47fe7a7 341 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 162 221 4.4E-4 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 ccrud_RS00870 ecf4e339e926fb3f5c087272c47fe7a7 341 PANTHER PTHR22604 2 340 4.2E-63 T 14-09-2016 ccrud_RS00870 ecf4e339e926fb3f5c087272c47fe7a7 341 PANTHER PTHR22604:SF53 2 340 4.2E-63 T 14-09-2016 ccrud_RS00870 ecf4e339e926fb3f5c087272c47fe7a7 341 Gene3D G3DSA:3.40.50.720 2 133 4.1E-33 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00870 ecf4e339e926fb3f5c087272c47fe7a7 341 SUPERFAMILY SSF55347 163 316 1.21E-12 T 14-09-2016 ccrud_RS00870 ecf4e339e926fb3f5c087272c47fe7a7 341 SUPERFAMILY SSF51735 3 135 8.8E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00870 ecf4e339e926fb3f5c087272c47fe7a7 341 Gene3D G3DSA:3.30.360.10 138 340 2.5E-23 T 14-09-2016 ccrud_RS00870 ecf4e339e926fb3f5c087272c47fe7a7 341 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 120 4.2E-19 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 ccrud_RS11130 70492ec9296d5fceeea845d8ba5aa4b0 765 PANTHER PTHR30047 37 731 3.1E-224 T 14-09-2016 ccrud_RS11130 70492ec9296d5fceeea845d8ba5aa4b0 765 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 73 559 7.5E-150 T 14-09-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 ccrud_RS11130 70492ec9296d5fceeea845d8ba5aa4b0 765 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 111 559 1.1E-136 T 14-09-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 ccrud_RS11130 70492ec9296d5fceeea845d8ba5aa4b0 765 PANTHER PTHR30047:SF6 37 731 3.1E-224 T 14-09-2016 ccrud_RS12850 254e56a41c896db9a5562b3038d93d1a 189 PANTHER PTHR11241 2 184 1.1E-62 T 14-09-2016 ccrud_RS12850 254e56a41c896db9a5562b3038d93d1a 189 PANTHER PTHR11241:SF7 2 184 1.1E-62 T 14-09-2016 ccrud_RS12850 254e56a41c896db9a5562b3038d93d1a 189 SUPERFAMILY SSF51283 2 183 3.53E-57 T 14-09-2016 IPR029054 dUTPase-like ccrud_RS12850 254e56a41c896db9a5562b3038d93d1a 189 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 182 35.137 T 14-09-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 ccrud_RS12850 254e56a41c896db9a5562b3038d93d1a 189 Pfam PF00692 dUTPase 65 178 8.3E-10 T 14-09-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 ccrud_RS12850 254e56a41c896db9a5562b3038d93d1a 189 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 3 181 1.3E-66 T 14-09-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 ccrud_RS12850 254e56a41c896db9a5562b3038d93d1a 189 Gene3D G3DSA:2.70.40.10 2 183 2.0E-68 T 14-09-2016 IPR029054 dUTPase-like ccrud_RS11005 c3a64701401ac136579b887c89d84dea 304 PANTHER PTHR30193:SF20 4 301 6.5E-37 T 14-09-2016 ccrud_RS11005 c3a64701401ac136579b887c89d84dea 304 SUPERFAMILY SSF161098 30 299 3.49E-31 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11005 c3a64701401ac136579b887c89d84dea 304 Gene3D G3DSA:1.10.3720.10 34 300 1.2E-29 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11005 c3a64701401ac136579b887c89d84dea 304 PANTHER PTHR30193 4 301 6.5E-37 T 14-09-2016 ccrud_RS13575 65b7ef40db8e251aa8493adac9bb17cb 158 SUPERFAMILY SSF46767 78 157 2.09E-27 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 ccrud_RS13575 65b7ef40db8e251aa8493adac9bb17cb 158 PANTHER PTHR10815 1 157 4.8E-48 T 14-09-2016 ccrud_RS13575 65b7ef40db8e251aa8493adac9bb17cb 158 SUPERFAMILY SSF53155 2 71 6.28E-16 T 14-09-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 ccrud_RS13575 65b7ef40db8e251aa8493adac9bb17cb 158 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 79 157 6.4E-29 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 ccrud_RS13575 65b7ef40db8e251aa8493adac9bb17cb 158 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 79 156 1.0E-30 T 14-09-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 ccrud_RS13575 65b7ef40db8e251aa8493adac9bb17cb 158 Gene3D G3DSA:1.10.10.10 78 157 1.9E-30 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13575 65b7ef40db8e251aa8493adac9bb17cb 158 PANTHER PTHR10815:SF5 1 157 4.8E-48 T 14-09-2016 ccrud_RS13575 65b7ef40db8e251aa8493adac9bb17cb 158 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 6 70 7.5E-9 T 14-09-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 ccrud_RS00795 3b51af5aaef272e8828b91d452c0edeb 102 SUPERFAMILY SSF55298 2 97 6.91E-29 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS00795 3b51af5aaef272e8828b91d452c0edeb 102 PANTHER PTHR11803 1 99 5.5E-29 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family ccrud_RS00795 3b51af5aaef272e8828b91d452c0edeb 102 Gene3D G3DSA:3.30.1330.40 2 98 4.0E-35 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS00795 3b51af5aaef272e8828b91d452c0edeb 102 Pfam PF01042 Endoribonuclease L-PSP 3 95 2.1E-21 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family ccrud_RS01855 e0bae12e95b31ca34a534c7cbcaa44f5 229 PANTHER PTHR12725:SF69 2 194 2.4E-26 T 14-09-2016 ccrud_RS01855 e0bae12e95b31ca34a534c7cbcaa44f5 229 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 190 3.1E-29 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS01855 e0bae12e95b31ca34a534c7cbcaa44f5 229 PANTHER PTHR12725 2 194 2.4E-26 T 14-09-2016 ccrud_RS01855 e0bae12e95b31ca34a534c7cbcaa44f5 229 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 90 184 3.4E-10 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS01855 e0bae12e95b31ca34a534c7cbcaa44f5 229 Gene3D G3DSA:3.40.50.1000 2 202 6.0E-29 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS01855 e0bae12e95b31ca34a534c7cbcaa44f5 229 SUPERFAMILY SSF56784 2 220 1.84E-32 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS01070 1ec2da3435a3f883be39479d0a4f0e56 298 PANTHER PTHR30413:SF9 39 271 9.1E-40 T 14-09-2016 ccrud_RS01070 1ec2da3435a3f883be39479d0a4f0e56 298 PANTHER PTHR30413 39 271 9.1E-40 T 14-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 ccrud_RS01070 1ec2da3435a3f883be39479d0a4f0e56 298 Pfam PF01061 ABC-2 type transporter 49 259 4.7E-30 T 14-09-2016 IPR013525 ABC-2 type transporter GO:0016020 ccrud_RS01355 ff15ec24141e83121f27e1414c29eea4 193 Pfam PF08281 Sigma-70, region 4 124 174 3.1E-14 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS01355 ff15ec24141e83121f27e1414c29eea4 193 Gene3D G3DSA:1.10.1740.10 11 111 1.1E-20 T 14-09-2016 ccrud_RS01355 ff15ec24141e83121f27e1414c29eea4 193 Pfam PF04542 Sigma-70 region 2 29 92 9.7E-12 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS01355 ff15ec24141e83121f27e1414c29eea4 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 25 174 4.1E-21 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS01355 ff15ec24141e83121f27e1414c29eea4 193 SUPERFAMILY SSF88659 120 175 5.42E-13 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS01355 ff15ec24141e83121f27e1414c29eea4 193 PANTHER PTHR30173 1 181 3.6E-54 T 14-09-2016 ccrud_RS01355 ff15ec24141e83121f27e1414c29eea4 193 SUPERFAMILY SSF88946 7 106 2.28E-21 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS01355 ff15ec24141e83121f27e1414c29eea4 193 PANTHER PTHR30173:SF2 1 181 3.6E-54 T 14-09-2016 ccrud_RS01355 ff15ec24141e83121f27e1414c29eea4 193 Gene3D G3DSA:1.10.10.10 123 174 6.3E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 Hamap MF_01576 Bifunctional protein FolD [folD]. 6 285 36.141 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 9 123 7.3E-37 T 14-09-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 Gene3D G3DSA:3.40.192.10 11 141 3.2E-45 T 14-09-2016 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 258 276 2.7E-66 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 77 104 2.7E-66 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 112 133 2.7E-66 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 36 58 2.7E-66 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 157 177 2.7E-66 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 208 237 2.7E-66 T 14-09-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 Gene3D G3DSA:3.40.50.720 142 266 3.7E-42 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 PANTHER PTHR10025 5 287 1.7E-124 T 14-09-2016 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 126 283 2.6E-58 T 14-09-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 SUPERFAMILY SSF51735 125 281 4.24E-38 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03260 06c0d0c5abc95270207e413211f27a5e 287 SUPERFAMILY SSF53223 5 124 5.47E-38 T 14-09-2016 ccrud_RS08480 a14f97f90dd6d2efd39093535e367521 276 Pfam PF04012 PspA/IM30 family 3 238 3.4E-51 T 14-09-2016 IPR007157 PspA/IM30 ccrud_RS06790 2807a237584660d22022316cec29d233 397 Pfam PF12555 Thiamine pyrophosphokinase C terminal 337 389 1.6E-11 T 14-09-2016 IPR022215 Thiamine pyrophosphokinase C-terminal ccrud_RS06790 2807a237584660d22022316cec29d233 397 SUPERFAMILY SSF63999 176 276 1.44E-12 T 14-09-2016 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356 ccrud_RS08065 daad5ccc29a97de4404feec3093d85aa 361 PANTHER PTHR12526 1 354 5.9E-106 T 14-09-2016 ccrud_RS08065 daad5ccc29a97de4404feec3093d85aa 361 Pfam PF13692 Glycosyl transferases group 1 188 319 4.5E-25 T 14-09-2016 ccrud_RS08065 daad5ccc29a97de4404feec3093d85aa 361 PANTHER PTHR12526:SF368 1 354 5.9E-106 T 14-09-2016 ccrud_RS08065 daad5ccc29a97de4404feec3093d85aa 361 SUPERFAMILY SSF53756 3 354 1.51E-65 T 14-09-2016 ccrud_RS08065 daad5ccc29a97de4404feec3093d85aa 361 Gene3D G3DSA:3.40.50.2000 176 332 6.5E-18 T 14-09-2016 ccrud_RS08065 daad5ccc29a97de4404feec3093d85aa 361 Pfam PF13439 Glycosyltransferase Family 4 14 173 7.7E-26 T 14-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain ccrud_RS04050 461bf23f22d6f8f12154e1326583a471 258 PANTHER PTHR31270 35 258 2.0E-60 T 14-09-2016 ccrud_RS04050 461bf23f22d6f8f12154e1326583a471 258 SUPERFAMILY SSF50969 54 248 1.57E-8 T 14-09-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like ccrud_RS04050 461bf23f22d6f8f12154e1326583a471 258 PANTHER PTHR31270:SF0 35 258 2.0E-60 T 14-09-2016 ccrud_RS04050 461bf23f22d6f8f12154e1326583a471 258 Pfam PF05096 Glutamine cyclotransferase 13 254 4.9E-91 T 14-09-2016 IPR007788 Glutamine cyclotransferase ccrud_RS09405 ab82b74ae5bce1391331c6e7277aabfe 208 SUPERFAMILY SSF48371 5 87 9.02E-8 T 14-09-2016 IPR016024 Armadillo-type fold GO:0005488 ccrud_RS09405 ab82b74ae5bce1391331c6e7277aabfe 208 Gene3D G3DSA:1.25.10.10 4 90 3.9E-8 T 14-09-2016 IPR011989 Armadillo-like helical ccrud_RS09405 ab82b74ae5bce1391331c6e7277aabfe 208 Gene3D G3DSA:1.25.10.10 128 155 3.9E-8 T 14-09-2016 IPR011989 Armadillo-like helical ccrud_RS09405 ab82b74ae5bce1391331c6e7277aabfe 208 Pfam PF13646 HEAT repeats 5 82 5.7E-7 T 14-09-2016 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 ProSitePatterns PS00622 LuxR-type HTH domain signature. 644 671 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 SUPERFAMILY SSF46894 624 681 3.4E-17 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 Gene3D G3DSA:1.10.10.10 628 681 2.9E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 Pfam PF00196 Bacterial regulatory proteins, luxR family 629 680 1.4E-16 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 SMART SM00421 627 684 2.8E-20 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 644 660 9.3E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 630 644 9.3E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 660 672 9.3E-11 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 SUPERFAMILY SSF48452 494 598 1.09E-5 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 Gene3D G3DSA:1.25.40.10 379 446 9.9E-7 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS10660 4d5ab690aaa5dd2fb25c9729a33c4a51 686 Gene3D G3DSA:1.25.40.10 524 601 9.9E-7 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS02785 10f59acde5c3f72b4761685eebab425f 497 Pfam PF00171 Aldehyde dehydrogenase family 26 493 4.9E-153 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS02785 10f59acde5c3f72b4761685eebab425f 497 Gene3D G3DSA:3.40.309.10 275 468 3.7E-61 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS02785 10f59acde5c3f72b4761685eebab425f 497 PANTHER PTHR11699 21 493 7.8E-179 T 14-09-2016 ccrud_RS02785 10f59acde5c3f72b4761685eebab425f 497 Gene3D G3DSA:3.40.605.10 20 274 4.4E-84 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS02785 10f59acde5c3f72b4761685eebab425f 497 SUPERFAMILY SSF53720 12 495 6.41E-149 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 Pfam PF03466 LysR substrate binding domain 91 216 2.9E-7 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 Gene3D G3DSA:1.10.10.10 1 84 6.9E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 Gene3D G3DSA:3.40.190.10 115 195 1.2E-7 T 14-09-2016 ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 PANTHER PTHR30346 1 288 1.7E-45 T 14-09-2016 ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.9E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.9E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.9E-9 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.5E-23 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 SUPERFAMILY SSF53850 91 216 1.07E-7 T 14-09-2016 ccrud_RS02190 460d7baef0c5486b005ad436fe226ef5 294 SUPERFAMILY SSF46785 1 84 1.42E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 SUPERFAMILY SSF48557 11 439 1.37E-88 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PANTHER PTHR11444:SF21 1 451 3.0E-111 T 14-09-2016 ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 Gene3D G3DSA:1.10.275.10 5 100 1.5E-19 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 SMART SM00998 361 439 5.6E-5 T 14-09-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 Pfam PF00206 Lyase 57 294 5.6E-37 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 Gene3D G3DSA:1.10.40.30 369 438 1.1E-13 T 14-09-2016 ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PRINTS PR00149 Fumarate lyase superfamily signature 273 289 3.4E-18 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PRINTS PR00149 Fumarate lyase superfamily signature 143 161 3.4E-18 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PRINTS PR00149 Fumarate lyase superfamily signature 228 255 3.4E-18 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PRINTS PR00149 Fumarate lyase superfamily signature 98 116 3.4E-18 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PRINTS PR00145 Argininosuccinate lyase family signature 138 158 2.5E-7 T 14-09-2016 ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PRINTS PR00145 Argininosuccinate lyase family signature 228 252 2.5E-7 T 14-09-2016 ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PRINTS PR00145 Argininosuccinate lyase family signature 273 289 2.5E-7 T 14-09-2016 ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PRINTS PR00145 Argininosuccinate lyase family signature 97 119 2.5E-7 T 14-09-2016 ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 PANTHER PTHR11444 1 451 3.0E-111 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 Pfam PF10397 Adenylosuccinate lyase C-terminus 362 435 5.9E-8 T 14-09-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 ccrud_RS00965 88d248eebdf7a78ccee8872294d2bf30 470 Gene3D G3DSA:1.20.200.10 101 368 7.8E-72 T 14-09-2016 ccrud_RS12345 d870ea1fadfe45ee47c7664325d8ef0f 129 Pfam PF03334 Na+/H+ antiporter subunit 14 99 1.2E-21 T 14-09-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 ccrud_RS12345 d870ea1fadfe45ee47c7664325d8ef0f 129 PANTHER PTHR34703:SF1 4 129 1.1E-21 T 14-09-2016 ccrud_RS12345 d870ea1fadfe45ee47c7664325d8ef0f 129 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 13 108 3.4E-18 T 14-09-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 ccrud_RS12345 d870ea1fadfe45ee47c7664325d8ef0f 129 PANTHER PTHR34703 4 129 1.1E-21 T 14-09-2016 ccrud_RS09905 56cf382418d749a0556c84c465c3ecca 263 PANTHER PTHR24220:SF534 3 232 4.2E-106 T 14-09-2016 ccrud_RS09905 56cf382418d749a0556c84c465c3ecca 263 Pfam PF00005 ABC transporter 22 177 5.9E-27 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS09905 56cf382418d749a0556c84c465c3ecca 263 PANTHER PTHR24220 3 232 4.2E-106 T 14-09-2016 ccrud_RS09905 56cf382418d749a0556c84c465c3ecca 263 Gene3D G3DSA:3.40.50.300 1 234 7.8E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09905 56cf382418d749a0556c84c465c3ecca 263 SMART SM00382 31 226 2.9E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS09905 56cf382418d749a0556c84c465c3ecca 263 SUPERFAMILY SSF52540 1 231 8.12E-51 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09160 67f056a1d0bda88ad971b47432f8e62c 257 Pfam PF00977 Histidine biosynthesis protein 6 241 6.7E-89 T 14-09-2016 IPR006062 Histidine biosynthesis GO:0000105 ccrud_RS09160 67f056a1d0bda88ad971b47432f8e62c 257 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 3 257 8.8E-113 T 14-09-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 ccrud_RS09160 67f056a1d0bda88ad971b47432f8e62c 257 Gene3D G3DSA:3.20.20.70 6 257 6.0E-108 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS09160 67f056a1d0bda88ad971b47432f8e62c 257 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 2 257 47.923 T 14-09-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 ccrud_RS09160 67f056a1d0bda88ad971b47432f8e62c 257 PANTHER PTHR21235 4 257 7.0E-125 T 14-09-2016 ccrud_RS09160 67f056a1d0bda88ad971b47432f8e62c 257 PANTHER PTHR21235:SF2 4 257 7.0E-125 T 14-09-2016 ccrud_RS09160 67f056a1d0bda88ad971b47432f8e62c 257 SUPERFAMILY SSF51366 4 257 1.81E-81 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS03565 0b7c7e04de02c1e3e327e7e6c7518977 278 PANTHER PTHR32243:SF18 1 278 1.1E-89 T 14-09-2016 ccrud_RS03565 0b7c7e04de02c1e3e327e7e6c7518977 278 PANTHER PTHR32243 1 278 1.1E-89 T 14-09-2016 ccrud_RS03565 0b7c7e04de02c1e3e327e7e6c7518977 278 SUPERFAMILY SSF161098 3 277 2.35E-71 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS03565 0b7c7e04de02c1e3e327e7e6c7518977 278 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 271 5.3E-21 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS03565 0b7c7e04de02c1e3e327e7e6c7518977 278 Gene3D G3DSA:1.10.3720.10 3 265 3.4E-64 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS00730 41b74746e4350d194c1e8d291dbd20c5 260 Pfam PF01925 Sulfite exporter TauE/SafE 14 252 3.5E-35 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 ccrud_RS00730 41b74746e4350d194c1e8d291dbd20c5 260 PANTHER PTHR30269 5 258 8.7E-61 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 ccrud_RS00730 41b74746e4350d194c1e8d291dbd20c5 260 PANTHER PTHR30269:SF0 5 258 8.7E-61 T 14-09-2016 ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 PANTHER PTHR11364 7 281 1.1E-74 T 14-09-2016 ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 SMART SM00450 165 285 4.7E-13 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 SMART SM00450 26 142 1.8E-11 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 ProSitePatterns PS00683 Rhodanese C-terminal signature. 269 279 - T 14-09-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 Pfam PF00581 Rhodanese-like domain 28 138 2.1E-8 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 Pfam PF00581 Rhodanese-like domain 171 280 2.1E-11 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 SUPERFAMILY SSF52821 19 144 3.14E-27 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 Gene3D G3DSA:3.40.250.10 18 144 5.4E-30 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 Gene3D G3DSA:3.40.250.10 161 281 7.8E-33 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS06830 d6eda2a1cea1123d61eea9ce438a6987 289 SUPERFAMILY SSF52821 171 282 4.32E-28 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS02170 4ce24a006764b1ef22df1386a10649ea 78 SUPERFAMILY SSF52833 4 77 1.83E-11 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS02170 4ce24a006764b1ef22df1386a10649ea 78 Pfam PF05768 Glutaredoxin-like domain (DUF836) 5 77 1.4E-13 T 14-09-2016 IPR008554 Glutaredoxin-like ccrud_RS02170 4ce24a006764b1ef22df1386a10649ea 78 Gene3D G3DSA:3.40.30.10 5 77 6.9E-15 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS06980 bd5159a728a7aac021eeb26fea2a42af 204 Pfam PF02577 Bifunctional nuclease 9 130 6.3E-27 T 14-09-2016 IPR003729 Bifunctional nuclease domain GO:0004518 ccrud_RS06980 bd5159a728a7aac021eeb26fea2a42af 204 SUPERFAMILY SSF103256 3 138 1.44E-37 T 14-09-2016 IPR003729 Bifunctional nuclease domain GO:0004518 ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 SUPERFAMILY SSF52540 4 244 1.58E-83 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 SUPERFAMILY SSF50331 238 331 2.43E-19 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 PANTHER PTHR24220 5 279 4.0E-156 T 14-09-2016 ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 Gene3D G3DSA:2.40.50.140 254 313 1.1E-10 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 Pfam PF00005 ABC transporter 22 163 2.1E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 PANTHER PTHR24220:SF151 5 279 4.0E-156 T 14-09-2016 ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 SMART SM00382 30 213 1.0E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 Gene3D G3DSA:3.40.50.300 3 236 8.8E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS03585 51c26130ea596d7ccdf7241887b54596 332 Pfam PF08402 TOBE domain 251 323 2.3E-7 T 14-09-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 ccrud_RS09730 d86ad6e83b7c12a1cc572fe41380bd62 348 SMART SM00729 71 277 1.3E-14 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 ccrud_RS09730 d86ad6e83b7c12a1cc572fe41380bd62 348 PIRSF PIRSF005963 4 314 2.1E-118 T 14-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 ccrud_RS09730 d86ad6e83b7c12a1cc572fe41380bd62 348 Gene3D G3DSA:3.20.20.70 38 301 2.1E-62 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS09730 d86ad6e83b7c12a1cc572fe41380bd62 348 SUPERFAMILY SSF102114 36 301 3.01E-59 T 14-09-2016 ccrud_RS09730 d86ad6e83b7c12a1cc572fe41380bd62 348 Pfam PF04055 Radical SAM superfamily 80 235 1.8E-11 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 ccrud_RS09730 d86ad6e83b7c12a1cc572fe41380bd62 348 Hamap MF_00206 Lipoyl synthase [lipA]. 1 307 127.961 T 14-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 ccrud_RS09730 d86ad6e83b7c12a1cc572fe41380bd62 348 TIGRFAM TIGR00510 lipA: lipoyl synthase 18 304 1.7E-95 T 14-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 ccrud_RS09730 d86ad6e83b7c12a1cc572fe41380bd62 348 PANTHER PTHR10949 9 337 2.5E-123 T 14-09-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 ccrud_RS07330 39e1ca6d7a74188dce253eb876fca806 114 PANTHER PTHR33154 21 107 1.8E-23 T 14-09-2016 ccrud_RS07330 39e1ca6d7a74188dce253eb876fca806 114 Gene3D G3DSA:1.10.10.10 13 108 1.6E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07330 39e1ca6d7a74188dce253eb876fca806 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 84 99 9.8E-12 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS07330 39e1ca6d7a74188dce253eb876fca806 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 34 49 9.8E-12 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS07330 39e1ca6d7a74188dce253eb876fca806 114 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 69 84 9.8E-12 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS07330 39e1ca6d7a74188dce253eb876fca806 114 Pfam PF12840 Helix-turn-helix domain 31 93 1.1E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07330 39e1ca6d7a74188dce253eb876fca806 114 SUPERFAMILY SSF46785 17 108 1.85E-24 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07330 39e1ca6d7a74188dce253eb876fca806 114 SMART SM00418 32 112 3.1E-23 T 14-09-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 Pfam PF00005 ABC transporter 1017 1166 9.8E-33 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 Pfam PF00005 ABC transporter 368 520 5.1E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 ProSitePatterns PS00211 ABC transporters family signature. 492 506 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 SMART SM00382 377 566 9.2E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 SMART SM00382 1026 1212 1.0E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 SUPERFAMILY SSF52540 998 1235 2.61E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 Pfam PF00664 ABC transporter transmembrane region 687 954 1.8E-42 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 Pfam PF00664 ABC transporter transmembrane region 29 308 5.3E-34 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 PANTHER PTHR24221 486 1235 4.2E-214 T 14-09-2016 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 SUPERFAMILY SSF52540 349 579 3.95E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 SUPERFAMILY SSF90123 672 983 9.03E-73 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 SUPERFAMILY SSF90123 9 344 1.44E-66 T 14-09-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 Gene3D G3DSA:1.20.1560.10 672 987 3.8E-79 T 14-09-2016 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 Gene3D G3DSA:1.20.1560.10 14 344 4.8E-64 T 14-09-2016 ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 Gene3D G3DSA:3.40.50.300 365 579 2.7E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05460 b1b2d39b1990c09e9c3d001c6c3b3e14 1237 Gene3D G3DSA:3.40.50.300 1003 1230 4.8E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03860 0ebeb66ac8c87e85e59abc7b55726725 121 Pfam PF13630 SdpI/YhfL protein family 33 105 2.5E-9 T 14-09-2016 IPR025962 SdpI/YhfL protein family ccrud_RS11890 aed135e3aea5327123c6c181cb529930 272 PANTHER PTHR12110 1 263 3.2E-37 T 14-09-2016 ccrud_RS11890 aed135e3aea5327123c6c181cb529930 272 PANTHER PTHR12110:SF26 1 263 3.2E-37 T 14-09-2016 ccrud_RS11890 aed135e3aea5327123c6c181cb529930 272 Pfam PF01261 Xylose isomerase-like TIM barrel 24 192 9.7E-8 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11890 aed135e3aea5327123c6c181cb529930 272 Gene3D G3DSA:3.20.20.150 4 253 2.2E-22 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11890 aed135e3aea5327123c6c181cb529930 272 SUPERFAMILY SSF51658 1 264 9.4E-46 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS02325 68c365abd837d6b6d0757160ce0e9acc 152 PANTHER PTHR11803:SF2 1 152 9.4E-35 T 14-09-2016 ccrud_RS02325 68c365abd837d6b6d0757160ce0e9acc 152 SUPERFAMILY SSF55298 1 151 4.24E-45 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS02325 68c365abd837d6b6d0757160ce0e9acc 152 Gene3D G3DSA:3.30.1330.40 1 151 2.2E-51 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS02325 68c365abd837d6b6d0757160ce0e9acc 152 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 7 145 6.3E-31 T 14-09-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like ccrud_RS02325 68c365abd837d6b6d0757160ce0e9acc 152 PANTHER PTHR11803 1 152 9.4E-35 T 14-09-2016 IPR006175 YjgF/YER057c/UK114 family ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 PANTHER PTHR11014 14 404 5.2E-100 T 14-09-2016 ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 Pfam PF01546 Peptidase family M20/M25/M40 79 360 1.4E-15 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 SUPERFAMILY SSF53187 15 213 2.97E-56 T 14-09-2016 ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 SUPERFAMILY SSF53187 316 413 2.97E-56 T 14-09-2016 ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 Pfam PF07687 Peptidase dimerisation domain 202 294 1.9E-10 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 SUPERFAMILY SSF55031 199 304 3.66E-26 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 Gene3D G3DSA:3.40.630.10 313 418 1.5E-63 T 14-09-2016 ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 Gene3D G3DSA:3.40.630.10 16 194 1.5E-63 T 14-09-2016 ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 23 354 2.5E-65 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 Gene3D G3DSA:3.30.70.360 197 304 1.1E-29 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 PIRSF PIRSF005962 4 382 2.4E-83 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 ccrud_RS09120 4bcf6b236783708097a2320eefc1db16 421 PANTHER PTHR11014:SF89 14 404 5.2E-100 T 14-09-2016 ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 SUPERFAMILY SSF51735 9 244 5.11E-83 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 2.7E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.7E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 2.7E-13 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PANTHER PTHR24321:SF6 6 244 3.8E-58 T 14-09-2016 ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 241 4.9E-67 T 14-09-2016 ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 3.3E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 3.3E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 3.3E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 3.3E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 3.3E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 3.3E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 PANTHER PTHR24321 6 244 3.8E-58 T 14-09-2016 ccrud_RS00215 88883658a4e18e81cd3b88fe55bb5f67 252 Gene3D G3DSA:3.40.50.720 6 245 1.4E-85 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 PANTHER PTHR11632 210 569 1.5E-141 T 14-09-2016 ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 PANTHER PTHR11632 5 140 1.5E-141 T 14-09-2016 ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 18 40 1.2E-6 T 14-09-2016 ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 530 545 1.2E-6 T 14-09-2016 ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 SUPERFAMILY SSF56425 349 514 2.48E-32 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 PANTHER PTHR11632:SF59 210 569 1.5E-141 T 14-09-2016 ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 PANTHER PTHR11632:SF59 5 140 1.5E-141 T 14-09-2016 ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 Pfam PF00890 FAD binding domain 18 553 3.2E-83 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 SUPERFAMILY SSF51905 14 336 1.99E-35 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 Gene3D G3DSA:3.90.700.10 349 504 3.6E-33 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 Gene3D G3DSA:3.50.50.60 217 325 4.2E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 Gene3D G3DSA:3.50.50.60 510 571 4.2E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00195 8cbd0e52f97e5e68510471ff2bed921d 584 Gene3D G3DSA:3.50.50.60 5 149 4.2E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 SMART SM00490 424 504 1.7E-12 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 SUPERFAMILY SSF52540 139 349 2.26E-31 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 PANTHER PTHR11274 7 558 4.2E-191 T 14-09-2016 ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 Pfam PF16203 ERCC3/RAD25/XPB C-terminal helicase 356 544 1.6E-45 T 14-09-2016 IPR032438 ERCC3/RAD25/XPB helicase, C-terminal domain ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 Gene3D G3DSA:3.40.50.300 183 348 1.2E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 SMART SM00487 182 357 2.1E-21 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 Pfam PF13625 Helicase conserved C-terminal domain 8 135 1.3E-46 T 14-09-2016 IPR032830 Helicase XPB/Ssl2, N-terminal domain ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 SUPERFAMILY SSF52540 391 540 9.73E-28 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 SUPERFAMILY SSF52540 288 358 9.73E-28 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 Gene3D G3DSA:3.40.50.300 386 538 8.8E-14 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04020 65193b88bf09ad10752a1ca58f73c49d 558 Pfam PF04851 Type III restriction enzyme, res subunit 185 330 8.8E-14 T 14-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 ccrud_RS08860 a057403d5f4b6f45cfc3c5dd619123cf 222 Gene3D G3DSA:3.30.420.10 22 162 5.5E-38 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS08860 a057403d5f4b6f45cfc3c5dd619123cf 222 Pfam PF01351 Ribonuclease HII 23 202 2.7E-34 T 14-09-2016 IPR024567 Ribonuclease HII/HIII domain ccrud_RS08860 a057403d5f4b6f45cfc3c5dd619123cf 222 PANTHER PTHR10954 22 214 7.9E-57 T 14-09-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 ccrud_RS08860 a057403d5f4b6f45cfc3c5dd619123cf 222 Hamap MF_00052_B Ribonuclease HII [rnhB]. 21 202 33.675 T 14-09-2016 IPR022898 Ribonuclease HII GO:0004523 ccrud_RS08860 a057403d5f4b6f45cfc3c5dd619123cf 222 SUPERFAMILY SSF53098 11 209 1.18E-59 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS13645 6df9b96075a3c472a298b705bf2aad4e 279 SUPERFAMILY SSF56529 59 276 1.28E-68 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 ccrud_RS13645 6df9b96075a3c472a298b705bf2aad4e 279 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 69 275 4.5E-62 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 ccrud_RS13645 6df9b96075a3c472a298b705bf2aad4e 279 PANTHER PTHR11820 26 279 4.4E-79 T 14-09-2016 ccrud_RS13645 6df9b96075a3c472a298b705bf2aad4e 279 PANTHER PTHR11820:SF6 26 279 4.4E-79 T 14-09-2016 ccrud_RS13645 6df9b96075a3c472a298b705bf2aad4e 279 Gene3D G3DSA:3.90.850.10 63 277 3.4E-71 T 14-09-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 SUPERFAMILY SSF158472 246 294 1.05E-7 T 14-09-2016 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 Gene3D G3DSA:3.30.70.1230 325 497 4.0E-34 T 14-09-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 PANTHER PTHR11920:SF257 249 493 5.6E-68 T 14-09-2016 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 PANTHER PTHR11920:SF257 17 57 5.6E-68 T 14-09-2016 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 Pfam PF00672 HAMP domain 226 294 3.7E-11 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 SUPERFAMILY SSF55073 320 500 3.61E-44 T 14-09-2016 IPR029787 Nucleotide cyclase ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 SMART SM00044 293 481 5.3E-10 T 14-09-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 PANTHER PTHR11920 249 493 5.6E-68 T 14-09-2016 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 PANTHER PTHR11920 17 57 5.6E-68 T 14-09-2016 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 SMART SM00304 245 297 2.4E-10 T 14-09-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 ccrud_RS01605 6b3aa65face200e6778b1d711ddd8c3f 508 Pfam PF00211 Adenylate and Guanylate cyclase catalytic domain 326 496 1.1E-26 T 14-09-2016 IPR001054 Adenylyl cyclase class-3/4/guanylyl cyclase GO:0009190|GO:0016849|GO:0035556 ccrud_RS01265 12830a3efb6d26574ed8a41ac3eeda17 426 Pfam PF12897 Alanine-glyoxylate amino-transferase 18 425 3.7E-172 T 14-09-2016 IPR024551 Aminotransferase, putative ccrud_RS01265 12830a3efb6d26574ed8a41ac3eeda17 426 Gene3D G3DSA:3.90.1150.10 254 423 2.8E-56 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS01265 12830a3efb6d26574ed8a41ac3eeda17 426 Gene3D G3DSA:3.90.1150.10 2 155 6.6E-46 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS01265 12830a3efb6d26574ed8a41ac3eeda17 426 PANTHER PTHR11751:SF110 12 417 6.4E-63 T 14-09-2016 ccrud_RS01265 12830a3efb6d26574ed8a41ac3eeda17 426 SUPERFAMILY SSF53383 9 415 1.01E-43 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS01265 12830a3efb6d26574ed8a41ac3eeda17 426 PANTHER PTHR11751 12 417 6.4E-63 T 14-09-2016 ccrud_RS01265 12830a3efb6d26574ed8a41ac3eeda17 426 Gene3D G3DSA:3.40.640.10 156 239 1.0E-4 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS06525 8409eee5fd59cb0ad76058fa26ab72a1 326 Pfam PF04018 Domain of unknown function (DUF368) 36 279 4.9E-67 T 14-09-2016 IPR007163 Protein of unknown function DUF368 ccrud_RS06525 8409eee5fd59cb0ad76058fa26ab72a1 326 PANTHER PTHR37308 20 307 1.4E-44 T 14-09-2016 ccrud_RS12325 da2af3ac9d064b52cdd07234d42ed2d7 163 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 6 109 1.6E-27 T 14-09-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 ccrud_RS12325 da2af3ac9d064b52cdd07234d42ed2d7 163 PANTHER PTHR34583 2 154 4.8E-31 T 14-09-2016 ccrud_RS12325 da2af3ac9d064b52cdd07234d42ed2d7 163 PANTHER PTHR34583:SF2 2 154 4.8E-31 T 14-09-2016 ccrud_RS01885 db299db5698faab3fdc4c52db1ff71fa 180 Gene3D G3DSA:3.30.420.10 124 178 5.7E-7 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS01885 db299db5698faab3fdc4c52db1ff71fa 180 PANTHER PTHR32552 4 176 5.1E-19 T 14-09-2016 ccrud_RS01885 db299db5698faab3fdc4c52db1ff71fa 180 Pfam PF00665 Integrase core domain 131 179 2.9E-8 T 14-09-2016 IPR001584 Integrase, catalytic core GO:0015074 ccrud_RS01885 db299db5698faab3fdc4c52db1ff71fa 180 SUPERFAMILY SSF53098 124 179 6.26E-8 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS01885 db299db5698faab3fdc4c52db1ff71fa 180 Pfam PF13276 HTH-like domain 47 106 6.1E-15 T 14-09-2016 IPR025948 HTH-like domain ccrud_RS00280 215b210049dcb690134cec59ab2d6dbd 197 Pfam PF11127 Protein of unknown function (DUF2892) 117 177 1.9E-9 T 14-09-2016 IPR021309 Protein of unknown function DUF2892 ccrud_RS00280 215b210049dcb690134cec59ab2d6dbd 197 Gene3D G3DSA:3.40.250.10 3 114 5.2E-24 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00280 215b210049dcb690134cec59ab2d6dbd 197 Pfam PF00581 Rhodanese-like domain 12 104 8.0E-14 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00280 215b210049dcb690134cec59ab2d6dbd 197 SUPERFAMILY SSF52821 3 116 1.31E-26 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00280 215b210049dcb690134cec59ab2d6dbd 197 SMART SM00450 11 108 9.7E-16 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS01385 eeecba8720f2d4f68ba6dd334e16ee5a 151 PANTHER PTHR34584 1 105 9.1E-12 T 14-09-2016 ccrud_RS01385 eeecba8720f2d4f68ba6dd334e16ee5a 151 Pfam PF01899 Na+/H+ ion antiporter subunit 2 104 8.5E-14 T 14-09-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 ccrud_RS01385 eeecba8720f2d4f68ba6dd334e16ee5a 151 PANTHER PTHR34584:SF1 1 105 9.1E-12 T 14-09-2016 ccrud_RS07085 19c4cfa01572d2b46889921ef1d395c9 342 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 49 323 1.5E-43 T 14-09-2016 ccrud_RS07085 19c4cfa01572d2b46889921ef1d395c9 342 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 11 300 1.4E-33 T 14-09-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 ccrud_RS07085 19c4cfa01572d2b46889921ef1d395c9 342 SUPERFAMILY SSF53850 46 141 7.35E-24 T 14-09-2016 ccrud_RS07085 19c4cfa01572d2b46889921ef1d395c9 342 SUPERFAMILY SSF53850 186 318 7.35E-24 T 14-09-2016 ccrud_RS10810 ea78715a95937806ffdcf773efd8b075 506 Pfam PF01593 Flavin containing amine oxidoreductase 11 490 5.8E-28 T 14-09-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 ccrud_RS10810 ea78715a95937806ffdcf773efd8b075 506 SUPERFAMILY SSF51905 1 317 4.66E-59 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10810 ea78715a95937806ffdcf773efd8b075 506 SUPERFAMILY SSF51905 461 495 4.66E-59 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10810 ea78715a95937806ffdcf773efd8b075 506 Gene3D G3DSA:3.50.50.60 2 94 1.8E-31 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10810 ea78715a95937806ffdcf773efd8b075 506 Gene3D G3DSA:3.50.50.60 203 340 1.8E-31 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10810 ea78715a95937806ffdcf773efd8b075 506 PANTHER PTHR10668 4 495 8.7E-80 T 14-09-2016 ccrud_RS10810 ea78715a95937806ffdcf773efd8b075 506 PANTHER PTHR10668:SF4 4 495 8.7E-80 T 14-09-2016 ccrud_RS10810 ea78715a95937806ffdcf773efd8b075 506 TIGRFAM TIGR02734 crtI_fam: phytoene desaturase 4 503 1.3E-169 T 14-09-2016 IPR014105 Carotenoid/retinoid oxidoreductase GO:0016117|GO:0055114 ccrud_RS12490 5593faa8bfc25b454e6dc079143d5ac1 391 Pfam PF13515 Fusaric acid resistance protein-like 45 165 1.2E-13 T 14-09-2016 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 Pfam PF00561 alpha/beta hydrolase fold 72 174 7.1E-19 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 SUPERFAMILY SSF53474 46 332 2.12E-52 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PRINTS PR00412 Epoxide hydrolase signature 98 113 3.1E-13 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PRINTS PR00412 Epoxide hydrolase signature 156 169 3.1E-13 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PRINTS PR00412 Epoxide hydrolase signature 308 330 3.1E-13 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PRINTS PR00412 Epoxide hydrolase signature 78 96 3.1E-13 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PRINTS PR00412 Epoxide hydrolase signature 142 155 3.1E-13 T 14-09-2016 IPR000639 Epoxide hydrolase-like GO:0003824 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PANTHER PTHR10992 275 333 1.1E-40 T 14-09-2016 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PANTHER PTHR10992 1 254 1.1E-40 T 14-09-2016 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 Gene3D G3DSA:3.40.50.1820 35 332 6.6E-54 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 113 4.3E-6 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PRINTS PR00111 Alpha/beta hydrolase fold signature 156 169 4.3E-6 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS01530 f123205a21990153416bb39eefc64e99 335 PRINTS PR00111 Alpha/beta hydrolase fold signature 142 155 4.3E-6 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS05125 113cee8a8e2d25c6942f363dfb1a3669 115 SUPERFAMILY SSF57783 5 38 1.04E-11 T 14-09-2016 ccrud_RS05125 113cee8a8e2d25c6942f363dfb1a3669 115 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 5 115 1.7E-30 T 14-09-2016 IPR004624 PhnA protein ccrud_RS05125 113cee8a8e2d25c6942f363dfb1a3669 115 SUPERFAMILY SSF82057 41 115 5.04E-19 T 14-09-2016 ccrud_RS05125 113cee8a8e2d25c6942f363dfb1a3669 115 Pfam PF08274 PhnA Zinc-Ribbon 5 33 2.6E-14 T 14-09-2016 IPR013987 PhnA protein, N-terminal ccrud_RS05125 113cee8a8e2d25c6942f363dfb1a3669 115 Gene3D G3DSA:2.20.25.10 4 41 4.1E-18 T 14-09-2016 ccrud_RS05125 113cee8a8e2d25c6942f363dfb1a3669 115 Pfam PF03831 PhnA domain 46 115 4.0E-25 T 14-09-2016 IPR013988 PhnA protein, C-terminal ccrud_RS05125 113cee8a8e2d25c6942f363dfb1a3669 115 Gene3D G3DSA:2.30.30.40 44 115 1.3E-25 T 14-09-2016 ccrud_RS05125 113cee8a8e2d25c6942f363dfb1a3669 115 PANTHER PTHR30305 4 115 2.5E-47 T 14-09-2016 ccrud_RS10555 b3c07c4ea70c1c20bb16e47bf666facd 157 SUPERFAMILY SSF55961 6 135 1.27E-21 T 14-09-2016 ccrud_RS10555 b3c07c4ea70c1c20bb16e47bf666facd 157 Gene3D G3DSA:3.30.530.20 10 155 2.6E-13 T 14-09-2016 IPR023393 START-like domain ccrud_RS10555 b3c07c4ea70c1c20bb16e47bf666facd 157 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 6 123 1.5E-13 T 14-09-2016 IPR019587 Polyketide cyclase/dehydrase ccrud_RS00660 030c8f8e7f2391c14dd3f37e358a91a1 219 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 10 63 0.01 T 14-09-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 ccrud_RS00660 030c8f8e7f2391c14dd3f37e358a91a1 219 SUPERFAMILY SSF47794 5 57 2.04E-6 T 14-09-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 ccrud_RS00660 030c8f8e7f2391c14dd3f37e358a91a1 219 Pfam PF14520 Helix-hairpin-helix domain 6 56 2.2E-8 T 14-09-2016 ccrud_RS00660 030c8f8e7f2391c14dd3f37e358a91a1 219 Pfam PF08818 Domain of unknown function (DU1801) 115 209 4.6E-9 T 14-09-2016 IPR014922 Domain of unknown function DUF1801 ccrud_RS00660 030c8f8e7f2391c14dd3f37e358a91a1 219 SUPERFAMILY SSF159888 151 213 3.79E-5 T 14-09-2016 ccrud_RS00660 030c8f8e7f2391c14dd3f37e358a91a1 219 Gene3D G3DSA:1.10.150.20 3 55 6.7E-8 T 14-09-2016 ccrud_RS04075 44f862c5d3cb51bd94ff990146300dd0 315 Pfam PF11268 Protein of unknown function (DUF3071) 1 200 1.6E-58 T 14-09-2016 IPR021421 Protein of unknown function DUF3071 ccrud_RS12135 d60a50487f341ef181ed79e7faa2fe64 127 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 3 117 1.6E-37 T 14-09-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 ccrud_RS12135 d60a50487f341ef181ed79e7faa2fe64 127 PANTHER PTHR20941 1 124 2.4E-33 T 14-09-2016 ccrud_RS12135 d60a50487f341ef181ed79e7faa2fe64 127 Pfam PF02152 Dihydroneopterin aldolase 5 115 1.3E-33 T 14-09-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 ccrud_RS12135 d60a50487f341ef181ed79e7faa2fe64 127 SUPERFAMILY SSF55620 1 121 1.33E-38 T 14-09-2016 ccrud_RS12135 d60a50487f341ef181ed79e7faa2fe64 127 Gene3D G3DSA:3.30.1130.10 1 121 7.8E-44 T 14-09-2016 ccrud_RS12135 d60a50487f341ef181ed79e7faa2fe64 127 TIGRFAM TIGR00526 folB_dom: FolB domain 2 121 3.2E-33 T 14-09-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 ccrud_RS12135 d60a50487f341ef181ed79e7faa2fe64 127 SMART SM00905 5 118 7.5E-48 T 14-09-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 ccrud_RS06825 4071df3b3ee6f26e4caf566ba01e4d6d 187 Gene3D G3DSA:3.40.630.30 2 159 1.6E-25 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS06825 4071df3b3ee6f26e4caf566ba01e4d6d 187 SUPERFAMILY SSF55729 2 151 1.41E-21 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS06825 4071df3b3ee6f26e4caf566ba01e4d6d 187 PANTHER PTHR13256 1 150 8.6E-21 T 14-09-2016 ccrud_RS06825 4071df3b3ee6f26e4caf566ba01e4d6d 187 Pfam PF13302 Acetyltransferase (GNAT) domain 9 148 8.2E-20 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS06825 4071df3b3ee6f26e4caf566ba01e4d6d 187 PANTHER PTHR13256:SF10 1 150 8.6E-21 T 14-09-2016 ccrud_RS06585 87aa5bbab32899b9cab1c88927b01754 281 PANTHER PTHR14194:SF73 1 280 3.6E-91 T 14-09-2016 ccrud_RS06585 87aa5bbab32899b9cab1c88927b01754 281 PANTHER PTHR14194 1 280 3.6E-91 T 14-09-2016 ccrud_RS06585 87aa5bbab32899b9cab1c88927b01754 281 Pfam PF05368 NmrA-like family 3 222 7.0E-22 T 14-09-2016 IPR008030 NmrA-like domain ccrud_RS06585 87aa5bbab32899b9cab1c88927b01754 281 SUPERFAMILY SSF51735 2 276 2.19E-57 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06585 87aa5bbab32899b9cab1c88927b01754 281 Gene3D G3DSA:3.40.50.720 1 220 4.0E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07890 84c85b623a92b347cb9b76ca384df7a8 274 PANTHER PTHR21089:SF1 6 271 2.9E-66 T 14-09-2016 ccrud_RS07890 84c85b623a92b347cb9b76ca384df7a8 274 SUPERFAMILY SSF53223 4 105 1.32E-26 T 14-09-2016 ccrud_RS07890 84c85b623a92b347cb9b76ca384df7a8 274 TIGRFAM TIGR01809 Shik-DH-AROM: shikimate-5-dehydrogenase 7 266 1.7E-68 T 14-09-2016 IPR010110 Shikimate dehydrogenase, AroM-type GO:0004764|GO:0005737|GO:0055114 KEGG: 00400+1.1.1.25+4.2.1.10+2.7.1.71+2.5.1.19+4.2.3.4|MetaCyc: PWY-6163|MetaCyc: PWY-6164|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053|UniPathway: UPA00053|UniPathway: UPA00053|UniPathway: UPA00053|UniPathway: UPA00053 ccrud_RS07890 84c85b623a92b347cb9b76ca384df7a8 274 SUPERFAMILY SSF51735 106 269 3.95E-29 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07890 84c85b623a92b347cb9b76ca384df7a8 274 Gene3D G3DSA:3.40.50.720 111 270 3.1E-35 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07890 84c85b623a92b347cb9b76ca384df7a8 274 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 11 93 1.7E-21 T 14-09-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07890 84c85b623a92b347cb9b76ca384df7a8 274 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 122 200 3.0E-7 T 14-09-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase ccrud_RS07890 84c85b623a92b347cb9b76ca384df7a8 274 PANTHER PTHR21089 6 271 2.9E-66 T 14-09-2016 ccrud_RS07890 84c85b623a92b347cb9b76ca384df7a8 274 Gene3D G3DSA:3.40.192.10 7 110 6.5E-35 T 14-09-2016 ccrud_RS08830 9bce2e06ecbb2c94ea776939bb5e1a1c 160 Gene3D G3DSA:2.70.70.10 27 150 4.1E-20 T 14-09-2016 ccrud_RS08830 9bce2e06ecbb2c94ea776939bb5e1a1c 160 PANTHER PTHR21666:SF190 38 150 1.4E-13 T 14-09-2016 ccrud_RS08830 9bce2e06ecbb2c94ea776939bb5e1a1c 160 PANTHER PTHR21666 38 150 1.4E-13 T 14-09-2016 ccrud_RS08830 9bce2e06ecbb2c94ea776939bb5e1a1c 160 Pfam PF01551 Peptidase family M23 54 145 3.1E-14 T 14-09-2016 IPR016047 Peptidase M23 ccrud_RS08830 9bce2e06ecbb2c94ea776939bb5e1a1c 160 SUPERFAMILY SSF51261 38 149 4.92E-14 T 14-09-2016 IPR011055 Duplicated hybrid motif ccrud_RS04205 8fcf76e2d8c15a9b7216623b632edcb2 483 Gene3D G3DSA:3.40.309.10 269 454 1.0E-60 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS04205 8fcf76e2d8c15a9b7216623b632edcb2 483 PANTHER PTHR11699 16 479 2.8E-200 T 14-09-2016 ccrud_RS04205 8fcf76e2d8c15a9b7216623b632edcb2 483 PANTHER PTHR11699:SF49 16 479 2.8E-200 T 14-09-2016 ccrud_RS04205 8fcf76e2d8c15a9b7216623b632edcb2 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS04205 8fcf76e2d8c15a9b7216623b632edcb2 483 SUPERFAMILY SSF53720 12 481 5.24E-151 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS04205 8fcf76e2d8c15a9b7216623b632edcb2 483 Gene3D G3DSA:3.40.605.10 14 268 4.6E-85 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS04205 8fcf76e2d8c15a9b7216623b632edcb2 483 Pfam PF00171 Aldehyde dehydrogenase family 24 478 8.8E-153 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS01320 f5fa7f7edae1954868dee49de290b264 2041 Gene3D G3DSA:2.60.40.1280 255 409 1.3E-10 T 14-09-2016 IPR011252 Fibrogen-binding domain 1 GO:0005618|GO:0007155 ccrud_RS01320 f5fa7f7edae1954868dee49de290b264 2041 SUPERFAMILY SSF49401 255 371 2.73E-9 T 14-09-2016 IPR008966 Adhesion domain ccrud_RS01320 f5fa7f7edae1954868dee49de290b264 2041 SUPERFAMILY SSF49401 551 683 6.38E-5 T 14-09-2016 IPR008966 Adhesion domain ccrud_RS01320 f5fa7f7edae1954868dee49de290b264 2041 Gene3D G3DSA:2.60.40.740 551 685 2.5E-7 T 14-09-2016 IPR008456 Collagen binding domain GO:0005518 ccrud_RS09150 c3ac3a7e5b4a5ec106994351757146b4 219 Pfam PF09534 Tryptophan-associated transmembrane protein (Trp_oprn_chp) 9 206 3.1E-50 T 14-09-2016 IPR019051 Trp biosynthesis associated, transmembrane protein, Oprn/Chp ccrud_RS09150 c3ac3a7e5b4a5ec106994351757146b4 219 TIGRFAM TIGR02234 trp_oprn_chp: membrane protein, TIGR02234 family 1 207 3.9E-68 T 14-09-2016 IPR011746 Trp biosynthesis associated, conserved hypothetical membrane protein ccrud_RS07060 8fb0f0798d3d69d7461bef5190e4fa83 247 Pfam PF01061 ABC-2 type transporter 8 210 3.5E-30 T 14-09-2016 IPR013525 ABC-2 type transporter GO:0016020 ccrud_RS07060 8fb0f0798d3d69d7461bef5190e4fa83 247 PIRSF PIRSF006648 3 247 1.4E-20 T 14-09-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 ccrud_RS07060 8fb0f0798d3d69d7461bef5190e4fa83 247 PANTHER PTHR30294 6 244 1.0E-31 T 14-09-2016 ccrud_RS02395 ebf75b1ca4274dbade9cc4c2604fa9c7 138 Gene3D G3DSA:3.10.129.10 35 133 9.3E-28 T 14-09-2016 IPR029069 HotDog domain ccrud_RS02395 ebf75b1ca4274dbade9cc4c2604fa9c7 138 PIRSF PIRSF014972 2 138 2.8E-49 T 14-09-2016 IPR025540 Fluoroacetyl-CoA thioesterase ccrud_RS02395 ebf75b1ca4274dbade9cc4c2604fa9c7 138 SUPERFAMILY SSF54637 1 132 6.8E-39 T 14-09-2016 IPR029069 HotDog domain ccrud_RS02395 ebf75b1ca4274dbade9cc4c2604fa9c7 138 PANTHER PTHR36934 1 134 1.6E-25 T 14-09-2016 ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 PANTHER PTHR10000:SF27 1 264 3.7E-64 T 14-09-2016 ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 Gene3D G3DSA:3.30.1240.10 83 177 8.9E-22 T 14-09-2016 ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 Gene3D G3DSA:3.40.50.1000 1 73 6.9E-47 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 Gene3D G3DSA:3.40.50.1000 178 262 6.9E-47 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 TIGRFAM TIGR00099 Cof-subfamily: Cof-like hydrolase 5 258 5.7E-52 T 14-09-2016 IPR000150 Cof protein GO:0016787 ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 258 2.1E-52 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 231 2.6E-25 T 14-09-2016 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: REACT_17015 ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 SUPERFAMILY SSF56784 1 262 8.67E-64 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 PANTHER PTHR10000 1 264 3.7E-64 T 14-09-2016 ccrud_RS04540 4f6dc4eaad8a12514b01cff4e0eade3a 265 ProSitePatterns PS01228 Hypothetical cof family signature 1. 5 16 - T 14-09-2016 IPR000150 Cof protein GO:0016787 ccrud_RS09505 284d016c6d60d3b05e9d16597ec3b60e 130 Pfam PF11239 Protein of unknown function (DUF3040) 2 85 3.2E-23 T 14-09-2016 IPR021401 Protein of unknown function DUF3040 ccrud_RS04655 8be4135dd38c9a85de7d7b8e0bdace2b 142 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 128 2.7E-6 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ccrud_RS04655 8be4135dd38c9a85de7d7b8e0bdace2b 142 Gene3D G3DSA:3.10.180.10 7 134 1.8E-25 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS04655 8be4135dd38c9a85de7d7b8e0bdace2b 142 PANTHER PTHR36503 5 137 6.2E-40 T 14-09-2016 ccrud_RS04655 8be4135dd38c9a85de7d7b8e0bdace2b 142 SUPERFAMILY SSF54593 9 134 5.77E-22 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS04655 8be4135dd38c9a85de7d7b8e0bdace2b 142 PANTHER PTHR36503:SF2 5 137 6.2E-40 T 14-09-2016 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 ProSitePatterns PS00450 Aconitase family signature 1. 471 487 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PANTHER PTHR11670 460 695 0.0 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PANTHER PTHR11670 2 391 0.0 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PANTHER PTHR11670 711 756 0.0 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 ProSitePatterns PS01244 Aconitase family signature 2. 537 550 - T 14-09-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 Gene3D G3DSA:3.30.499.10 366 391 9.3E-62 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 Gene3D G3DSA:3.30.499.10 463 619 9.3E-62 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PANTHER PTHR11670 796 942 0.0 T 14-09-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PANTHER PTHR11670:SF1 796 942 0.0 T 14-09-2016 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 Gene3D G3DSA:3.20.19.10 681 938 1.8E-76 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PANTHER PTHR11670:SF1 460 695 0.0 T 14-09-2016 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 SUPERFAMILY SSF52016 675 938 8.04E-79 T 14-09-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PRINTS PR00415 Aconitase family signature 276 289 1.5E-38 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PRINTS PR00415 Aconitase family signature 370 384 1.5E-38 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PRINTS PR00415 Aconitase family signature 171 179 1.5E-38 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PRINTS PR00415 Aconitase family signature 147 160 1.5E-38 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PRINTS PR00415 Aconitase family signature 214 229 1.5E-38 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PRINTS PR00415 Aconitase family signature 200 213 1.5E-38 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PRINTS PR00415 Aconitase family signature 475 486 1.5E-38 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PRINTS PR00415 Aconitase family signature 537 550 1.5E-38 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PRINTS PR00415 Aconitase family signature 290 303 1.5E-38 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 Gene3D G3DSA:3.40.1060.10 247 365 4.0E-35 T 14-09-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 Gene3D G3DSA:3.30.499.10 33 246 2.3E-78 T 14-09-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 SUPERFAMILY SSF53732 10 404 3.66E-217 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 SUPERFAMILY SSF53732 445 671 3.66E-217 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 Pfam PF00694 Aconitase C-terminal domain 735 864 2.4E-41 T 14-09-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PANTHER PTHR11670:SF1 711 756 0.0 T 14-09-2016 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 PANTHER PTHR11670:SF1 2 391 0.0 T 14-09-2016 ccrud_RS07500 0fdd00935b45c3bc9f3d9dd81044328f 943 Pfam PF00330 Aconitase family (aconitate hydratase) 67 606 6.0E-175 T 14-09-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 ccrud_RS10300 0f111ccaa9216cb22a05297fc4023563 322 Gene3D G3DSA:1.10.10.10 6 80 9.9E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10300 0f111ccaa9216cb22a05297fc4023563 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 1.5E-17 T 14-09-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 ccrud_RS10300 0f111ccaa9216cb22a05297fc4023563 322 PANTHER PTHR30419 1 298 1.6E-61 T 14-09-2016 ccrud_RS10300 0f111ccaa9216cb22a05297fc4023563 322 SUPERFAMILY SSF46785 6 115 1.28E-20 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS10300 0f111ccaa9216cb22a05297fc4023563 322 PANTHER PTHR30419:SF3 1 298 1.6E-61 T 14-09-2016 ccrud_RS10300 0f111ccaa9216cb22a05297fc4023563 322 Gene3D G3DSA:3.40.190.10 182 273 2.2E-18 T 14-09-2016 ccrud_RS10300 0f111ccaa9216cb22a05297fc4023563 322 Pfam PF03466 LysR substrate binding domain 93 298 5.2E-42 T 14-09-2016 IPR005119 LysR, substrate-binding ccrud_RS10300 0f111ccaa9216cb22a05297fc4023563 322 SUPERFAMILY SSF53850 93 298 6.24E-41 T 14-09-2016 ccrud_RS10300 0f111ccaa9216cb22a05297fc4023563 322 Gene3D G3DSA:3.40.190.10 95 181 1.1E-18 T 14-09-2016 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 TIGRFAM TIGR00498 lexA: repressor LexA 31 252 4.8E-71 T 14-09-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 Hamap MF_00015 LexA repressor [lexA]. 31 252 33.015 T 14-09-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 PANTHER PTHR33516:SF2 125 252 4.0E-79 T 14-09-2016 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 PANTHER PTHR33516:SF2 30 104 4.0E-79 T 14-09-2016 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 SUPERFAMILY SSF46785 31 98 2.16E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 SUPERFAMILY SSF51306 132 250 2.09E-33 T 14-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 Gene3D G3DSA:2.10.109.10 133 252 2.2E-41 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 PANTHER PTHR33516 125 252 4.0E-79 T 14-09-2016 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 PANTHER PTHR33516 30 104 4.0E-79 T 14-09-2016 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 Gene3D G3DSA:1.10.10.10 31 97 2.4E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 Pfam PF00717 Peptidase S24-like 171 234 1.9E-11 T 14-09-2016 IPR019759 Peptidase S24/S26A/S26B ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 179 190 2.0E-9 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 168 178 2.0E-9 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 207 219 2.0E-9 T 14-09-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 ccrud_RS08330 047b8b34c030fc58a9b9a5c701213289 252 Pfam PF01726 LexA DNA binding domain 31 93 1.9E-24 T 14-09-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 Pfam PF07687 Peptidase dimerisation domain 228 320 4.9E-8 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 SUPERFAMILY SSF53187 54 242 1.13E-53 T 14-09-2016 ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 SUPERFAMILY SSF53187 343 439 1.13E-53 T 14-09-2016 ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 PANTHER PTHR30575:SF0 42 462 1.3E-131 T 14-09-2016 ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 66 420 1.4E-91 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 SUPERFAMILY SSF55031 227 335 1.06E-21 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 Pfam PF01546 Peptidase family M20/M25/M40 141 412 4.7E-6 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 PANTHER PTHR30575 42 462 1.3E-131 T 14-09-2016 ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 Gene3D G3DSA:3.40.630.10 52 228 2.9E-60 T 14-09-2016 ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 Gene3D G3DSA:3.40.630.10 340 450 2.9E-60 T 14-09-2016 ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 Gene3D G3DSA:3.30.70.360 229 334 2.6E-24 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS00575 ce6b9da29991202b9201b874e0bffced 463 PIRSF PIRSF037226 45 458 9.0E-110 T 14-09-2016 IPR017144 Peptidase M20A, amidohydrolase, predicted ccrud_RS09595 c1e6a73573da9b4be30ce2e2a6bedf3c 339 PANTHER PTHR21666 225 339 4.3E-31 T 14-09-2016 ccrud_RS09595 c1e6a73573da9b4be30ce2e2a6bedf3c 339 SUPERFAMILY SSF54001 224 339 7.19E-37 T 14-09-2016 ccrud_RS09595 c1e6a73573da9b4be30ce2e2a6bedf3c 339 Gene3D G3DSA:3.90.1720.10 225 339 5.4E-39 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS09595 c1e6a73573da9b4be30ce2e2a6bedf3c 339 Pfam PF00877 NlpC/P60 family 240 326 2.6E-21 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS01515 f297b0df6b24186d06928550b0c4e2a3 183 ProSitePatterns PS00194 Thioredoxin family active site. 76 94 - T 14-09-2016 IPR017937 Thioredoxin, conserved site GO:0045454 ccrud_RS01515 f297b0df6b24186d06928550b0c4e2a3 183 Gene3D G3DSA:3.40.30.10 74 180 2.2E-18 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS01515 f297b0df6b24186d06928550b0c4e2a3 183 Pfam PF00578 AhpC/TSA family 75 162 1.2E-5 T 14-09-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 ccrud_RS01515 f297b0df6b24186d06928550b0c4e2a3 183 PANTHER PTHR10438:SF244 134 183 1.0E-12 T 14-09-2016 ccrud_RS01515 f297b0df6b24186d06928550b0c4e2a3 183 PANTHER PTHR10438:SF244 75 111 1.0E-12 T 14-09-2016 ccrud_RS01515 f297b0df6b24186d06928550b0c4e2a3 183 PANTHER PTHR10438 75 111 1.0E-12 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ccrud_RS01515 f297b0df6b24186d06928550b0c4e2a3 183 PANTHER PTHR10438 134 183 1.0E-12 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ccrud_RS01515 f297b0df6b24186d06928550b0c4e2a3 183 SUPERFAMILY SSF52833 75 175 5.51E-18 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS01250 757922a4f1fdc4937fceb2405606434a 310 PANTHER PTHR34315 81 282 2.2E-31 T 14-09-2016 ccrud_RS01250 757922a4f1fdc4937fceb2405606434a 310 Gene3D G3DSA:2.60.130.10 65 232 1.5E-37 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS01250 757922a4f1fdc4937fceb2405606434a 310 Pfam PF00775 Dioxygenase 96 190 4.4E-12 T 14-09-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 ccrud_RS01250 757922a4f1fdc4937fceb2405606434a 310 SUPERFAMILY SSF49482 63 282 2.09E-45 T 14-09-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 ccrud_RS10335 d11eb97d579b1d6acb9178633cdac7fd 254 Gene3D G3DSA:2.70.98.10 11 249 8.3E-58 T 14-09-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 ccrud_RS10335 d11eb97d579b1d6acb9178633cdac7fd 254 PANTHER PTHR11122:SF14 11 254 1.8E-46 T 14-09-2016 ccrud_RS10335 d11eb97d579b1d6acb9178633cdac7fd 254 PIRSF PIRSF016020 6 253 9.0E-36 T 14-09-2016 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 ccrud_RS10335 d11eb97d579b1d6acb9178633cdac7fd 254 SUPERFAMILY SSF74650 10 248 1.13E-51 T 14-09-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 ccrud_RS10335 d11eb97d579b1d6acb9178633cdac7fd 254 Pfam PF01263 Aldose 1-epimerase 10 248 5.1E-24 T 14-09-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 ccrud_RS10335 d11eb97d579b1d6acb9178633cdac7fd 254 PANTHER PTHR11122 11 254 1.8E-46 T 14-09-2016 ccrud_RS04405 9fc56caa9be5a6f8663d7c54775fea0a 595 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 100 547 2.8E-174 T 14-09-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 ccrud_RS04405 9fc56caa9be5a6f8663d7c54775fea0a 595 PANTHER PTHR30047:SF2 31 577 2.8E-201 T 14-09-2016 ccrud_RS04405 9fc56caa9be5a6f8663d7c54775fea0a 595 ProSitePatterns PS01303 BCCT family of transporters signature. 365 374 - T 14-09-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 ccrud_RS04405 9fc56caa9be5a6f8663d7c54775fea0a 595 PANTHER PTHR30047 31 577 2.8E-201 T 14-09-2016 ccrud_RS04405 9fc56caa9be5a6f8663d7c54775fea0a 595 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 62 546 1.2E-168 T 14-09-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 ccrud_RS10445 9e5b69a3717f33047c6e3f17934f34bc 274 Gene3D G3DSA:3.30.1180.10 134 256 1.7E-35 T 14-09-2016 ccrud_RS10445 9e5b69a3717f33047c6e3f17934f34bc 274 PANTHER PTHR33434 22 258 1.5E-32 T 14-09-2016 ccrud_RS10445 9e5b69a3717f33047c6e3f17934f34bc 274 TIGRFAM TIGR00762 DegV: EDD domain protein, DegV family 38 256 4.9E-47 T 14-09-2016 IPR003797 DegV ccrud_RS10445 9e5b69a3717f33047c6e3f17934f34bc 274 Pfam PF02645 Uncharacterised protein, DegV family COG1307 3 35 7.8E-5 T 14-09-2016 IPR003797 DegV ccrud_RS10445 9e5b69a3717f33047c6e3f17934f34bc 274 Pfam PF02645 Uncharacterised protein, DegV family COG1307 37 258 2.9E-56 T 14-09-2016 IPR003797 DegV ccrud_RS10445 9e5b69a3717f33047c6e3f17934f34bc 274 Gene3D G3DSA:3.40.50.10170 35 127 1.5E-24 T 14-09-2016 ccrud_RS10445 9e5b69a3717f33047c6e3f17934f34bc 274 Gene3D G3DSA:3.40.50.10170 1 34 1.1E-6 T 14-09-2016 ccrud_RS10445 9e5b69a3717f33047c6e3f17934f34bc 274 PANTHER PTHR33434:SF2 22 258 1.5E-32 T 14-09-2016 ccrud_RS10445 9e5b69a3717f33047c6e3f17934f34bc 274 SUPERFAMILY SSF82549 1 258 4.71E-59 T 14-09-2016 ccrud_RS12125 0651cd9c721bd433773b0ef876e2fd0e 155 Pfam PF11377 Protein of unknown function (DUF3180) 9 147 8.4E-36 T 14-09-2016 IPR021517 Protein of unknown function DUF3180 ccrud_RS08890 f661fc3321e016a33593a60f7620b38e 260 Pfam PF05690 Thiazole biosynthesis protein ThiG 4 248 3.2E-107 T 14-09-2016 ccrud_RS08890 f661fc3321e016a33593a60f7620b38e 260 Hamap MF_00443 Thiazole synthase [thiG]. 1 254 40.389 T 14-09-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 ccrud_RS08890 f661fc3321e016a33593a60f7620b38e 260 PANTHER PTHR34266 1 259 3.3E-141 T 14-09-2016 ccrud_RS08890 f661fc3321e016a33593a60f7620b38e 260 Gene3D G3DSA:3.20.20.70 1 253 3.1E-56 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS08890 f661fc3321e016a33593a60f7620b38e 260 SUPERFAMILY SSF110399 1 240 6.93E-79 T 14-09-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 ccrud_RS03005 f49e25f079749364c606600f96e4b4e4 165 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 15 144 7.2E-30 T 14-09-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 ccrud_RS03005 f49e25f079749364c606600f96e4b4e4 165 PANTHER PTHR33540:SF2 16 163 1.3E-32 T 14-09-2016 ccrud_RS03005 f49e25f079749364c606600f96e4b4e4 165 SUPERFAMILY SSF52540 24 94 3.54E-13 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03005 f49e25f079749364c606600f96e4b4e4 165 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 17 144 1.3E-21 T 14-09-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 ccrud_RS03005 f49e25f079749364c606600f96e4b4e4 165 PANTHER PTHR33540 16 163 1.3E-32 T 14-09-2016 ccrud_RS03005 f49e25f079749364c606600f96e4b4e4 165 Gene3D G3DSA:3.40.50.300 12 163 3.3E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07950 6d0a521ab6062e68c1e673a6663f9201 238 SUPERFAMILY SSF54631 103 214 7.56E-8 T 14-09-2016 ccrud_RS07950 6d0a521ab6062e68c1e673a6663f9201 238 Gene3D G3DSA:3.10.580.10 104 214 2.9E-6 T 14-09-2016 ccrud_RS04805 494379b379c21ee91fb91c18c285ba3d 262 Pfam PF13406 Transglycosylase SLT domain 178 235 1.6E-7 T 14-09-2016 IPR031304 Transglycosylase SLT domain 2 ccrud_RS04805 494379b379c21ee91fb91c18c285ba3d 262 Gene3D G3DSA:1.10.530.10 175 251 1.2E-9 T 14-09-2016 ccrud_RS04805 494379b379c21ee91fb91c18c285ba3d 262 SUPERFAMILY SSF53955 13 259 2.25E-38 T 14-09-2016 IPR023346 Lysozyme-like domain ccrud_RS02290 30d24cf270aac209ed8ea4c283e0f104 268 PANTHER PTHR31272 27 262 6.3E-60 T 14-09-2016 ccrud_RS02290 30d24cf270aac209ed8ea4c283e0f104 268 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 32 245 5.1E-45 T 14-09-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 ccrud_RS02290 30d24cf270aac209ed8ea4c283e0f104 268 PANTHER PTHR31272:SF4 27 262 6.3E-60 T 14-09-2016 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 95 110 - T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 PANTHER PTHR30330 1 481 1.8E-211 T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 Pfam PF01235 Sodium:alanine symporter family 61 461 1.2E-138 T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 PRINTS PR00175 Sodium/alanine symporter signature 358 380 5.1E-50 T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 PRINTS PR00175 Sodium/alanine symporter signature 312 330 5.1E-50 T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 PRINTS PR00175 Sodium/alanine symporter signature 189 207 5.1E-50 T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 PRINTS PR00175 Sodium/alanine symporter signature 217 236 5.1E-50 T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 PRINTS PR00175 Sodium/alanine symporter signature 95 117 5.1E-50 T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 PRINTS PR00175 Sodium/alanine symporter signature 418 438 5.1E-50 T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 PANTHER PTHR30330:SF1 1 481 1.8E-211 T 14-09-2016 ccrud_RS01100 fdbf215c5609f6f4b5df32672aa307ab 495 TIGRFAM TIGR00835 agcS: amino acid carrier protein 17 449 3.0E-132 T 14-09-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 ccrud_RS14320 ec6284309ed398bcd8e7328c2d099f0d 87 PANTHER PTHR38146 20 86 1.3E-16 T 14-09-2016 ccrud_RS14320 ec6284309ed398bcd8e7328c2d099f0d 87 PANTHER PTHR38146:SF2 20 86 1.3E-16 T 14-09-2016 ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SUPERFAMILY SSF51126 28 205 8.99E-26 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SUPERFAMILY SSF51126 235 438 8.99E-26 T 14-09-2016 IPR011050 Pectin lyase fold/virulence factor ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 Gene3D G3DSA:2.160.20.10 33 248 8.2E-15 T 14-09-2016 IPR012334 Pectin lyase fold ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 Gene3D G3DSA:2.160.20.10 249 442 3.2E-13 T 14-09-2016 IPR012334 Pectin lyase fold ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 Pfam PF13229 Right handed beta helix region 231 410 1.2E-8 T 14-09-2016 ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SMART SM00710 277 305 4600.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SMART SM00710 246 276 540.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SMART SM00710 214 245 850.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SMART SM00710 306 328 940.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SMART SM00710 368 407 1200.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SMART SM00710 335 362 5300.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SMART SM00710 184 206 7600.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SMART SM00710 156 177 140.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS02860 fcd75084865cf6cd03d577280393c9fb 548 SMART SM00710 121 149 2100.0 T 14-09-2016 IPR006626 Parallel beta-helix repeat ccrud_RS04240 0127115bd15313905249d0e5a74e3938 237 PANTHER PTHR21666 90 236 5.0E-46 T 14-09-2016 ccrud_RS04240 0127115bd15313905249d0e5a74e3938 237 Gene3D G3DSA:2.70.70.10 96 231 8.0E-45 T 14-09-2016 ccrud_RS04240 0127115bd15313905249d0e5a74e3938 237 Pfam PF01551 Peptidase family M23 131 226 4.3E-32 T 14-09-2016 IPR016047 Peptidase M23 ccrud_RS04240 0127115bd15313905249d0e5a74e3938 237 SUPERFAMILY SSF51261 60 230 9.94E-48 T 14-09-2016 IPR011055 Duplicated hybrid motif ccrud_RS09245 41c98e7c5d0ad446b904bdfee159e159 153 SUPERFAMILY SSF46785 46 150 8.62E-30 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS09245 41c98e7c5d0ad446b904bdfee159e159 153 PANTHER PTHR33204:SF7 37 153 1.6E-38 T 14-09-2016 ccrud_RS09245 41c98e7c5d0ad446b904bdfee159e159 153 PANTHER PTHR33204 37 153 1.6E-38 T 14-09-2016 ccrud_RS09245 41c98e7c5d0ad446b904bdfee159e159 153 Pfam PF01638 HxlR-like helix-turn-helix 59 146 1.6E-23 T 14-09-2016 IPR002577 Helix-turn-helix, HxlR type ccrud_RS09245 41c98e7c5d0ad446b904bdfee159e159 153 Gene3D G3DSA:1.10.10.10 38 151 4.7E-39 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.1E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.1E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.1E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.1E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.1E-20 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 193 2.1E-5 T 14-09-2016 ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 5.9E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 5.9E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 5.9E-8 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PANTHER PTHR24322:SF57 14 141 2.8E-41 T 14-09-2016 ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 Pfam PF00106 short chain dehydrogenase 12 191 5.0E-42 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PIRSF PIRSF000126 1 266 5.6E-72 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PANTHER PTHR24322:SF57 157 189 2.8E-41 T 14-09-2016 ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PANTHER PTHR24322 157 189 2.8E-41 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 PANTHER PTHR24322 14 141 2.8E-41 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 SUPERFAMILY SSF51735 8 260 1.75E-56 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11100 32bb1acca2cac4305da04c4dfd567492 266 Gene3D G3DSA:3.40.50.720 11 235 1.7E-55 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03195 192003ce33c85215b38d8f462abb8e0c 251 SUPERFAMILY SSF53448 7 231 2.53E-35 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS03195 192003ce33c85215b38d8f462abb8e0c 251 PANTHER PTHR22916 9 191 1.8E-24 T 14-09-2016 ccrud_RS03195 192003ce33c85215b38d8f462abb8e0c 251 Gene3D G3DSA:3.90.550.10 9 238 5.8E-31 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS03195 192003ce33c85215b38d8f462abb8e0c 251 Pfam PF00535 Glycosyl transferase family 2 10 110 8.2E-23 T 14-09-2016 IPR001173 Glycosyltransferase 2-like ccrud_RS11530 aab0541636879bf662c14e58e10154c0 96 PANTHER PTHR31435 1 94 4.1E-18 T 14-09-2016 ccrud_RS11530 aab0541636879bf662c14e58e10154c0 96 Gene3D G3DSA:3.40.630.30 6 94 1.7E-23 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS11530 aab0541636879bf662c14e58e10154c0 96 Pfam PF14542 GCN5-related N-acetyl-transferase 17 94 3.2E-23 T 14-09-2016 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase ccrud_RS11530 aab0541636879bf662c14e58e10154c0 96 SUPERFAMILY SSF55729 7 94 5.66E-25 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS06280 a03536290e864a2ed63384c2bcda683e 190 Pfam PF05063 MT-A70 1 161 1.3E-23 T 14-09-2016 IPR007757 MT-A70-like GO:0006139|GO:0008168 ccrud_RS06280 a03536290e864a2ed63384c2bcda683e 190 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 1 7 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ccrud_RS06280 a03536290e864a2ed63384c2bcda683e 190 SUPERFAMILY SSF53335 1 133 8.31E-9 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06280 a03536290e864a2ed63384c2bcda683e 190 PANTHER PTHR12829 1 163 1.0E-14 T 14-09-2016 ccrud_RS13790 f43d738455a99acdb381183640a74dea 1467 Pfam PF00932 Lamin Tail Domain 254 345 2.5E-10 T 14-09-2016 IPR001322 Lamin Tail Domain ccrud_RS13790 f43d738455a99acdb381183640a74dea 1467 Pfam PF00932 Lamin Tail Domain 48 134 3.8E-7 T 14-09-2016 IPR001322 Lamin Tail Domain ccrud_RS13790 f43d738455a99acdb381183640a74dea 1467 PIRSF PIRSF036444 108 1467 0.0 T 14-09-2016 IPR011401 Phosphoesterase, YvnB ccrud_RS13790 f43d738455a99acdb381183640a74dea 1467 Pfam PF00149 Calcineurin-like phosphoesterase 1058 1249 3.3E-9 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 ccrud_RS13790 f43d738455a99acdb381183640a74dea 1467 SUPERFAMILY SSF56300 1052 1304 8.73E-24 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS13790 f43d738455a99acdb381183640a74dea 1467 Gene3D G3DSA:3.60.21.10 1047 1258 4.8E-21 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS12635 b2c06ae2fb30e0018c55bcaa0815de68 944 SUPERFAMILY SSF49313 558 637 2.51E-6 T 14-09-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 ccrud_RS12635 b2c06ae2fb30e0018c55bcaa0815de68 944 SUPERFAMILY SSF49313 643 725 3.92E-7 T 14-09-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 ccrud_RS12635 b2c06ae2fb30e0018c55bcaa0815de68 944 SUPERFAMILY SSF49313 759 814 8.95E-10 T 14-09-2016 IPR015919 Cadherin-like GO:0005509|GO:0016020 ccrud_RS12635 b2c06ae2fb30e0018c55bcaa0815de68 944 Pfam PF05345 Putative Ig domain 764 802 2.8E-8 T 14-09-2016 IPR008009 Putative Ig ccrud_RS12635 b2c06ae2fb30e0018c55bcaa0815de68 944 Gene3D G3DSA:2.60.40.10 764 814 1.3E-8 T 14-09-2016 IPR013783 Immunoglobulin-like fold ccrud_RS12635 b2c06ae2fb30e0018c55bcaa0815de68 944 Gene3D G3DSA:2.60.40.10 685 725 4.2E-5 T 14-09-2016 IPR013783 Immunoglobulin-like fold ccrud_RS08070 20408fb60104ccdaa07aaeb3a84a87e9 315 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 15 290 1.9E-56 T 14-09-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 ccrud_RS08070 20408fb60104ccdaa07aaeb3a84a87e9 315 PANTHER PTHR30606 10 313 1.1E-60 T 14-09-2016 ccrud_RS08070 20408fb60104ccdaa07aaeb3a84a87e9 315 PANTHER PTHR30606:SF2 10 313 1.1E-60 T 14-09-2016 ccrud_RS13385 5dde3478c2b1295cf2fa1c08de4b7766 277 SUPERFAMILY SSF63817 42 261 1.44E-46 T 14-09-2016 IPR023365 Sortase domain ccrud_RS13385 5dde3478c2b1295cf2fa1c08de4b7766 277 Gene3D G3DSA:2.40.260.10 81 180 2.2E-20 T 14-09-2016 IPR023365 Sortase domain ccrud_RS13385 5dde3478c2b1295cf2fa1c08de4b7766 277 Gene3D G3DSA:2.40.260.10 227 261 2.2E-20 T 14-09-2016 IPR023365 Sortase domain ccrud_RS13385 5dde3478c2b1295cf2fa1c08de4b7766 277 Pfam PF04203 Sortase family 92 260 1.1E-37 T 14-09-2016 IPR005754 Sortase family ccrud_RS13385 5dde3478c2b1295cf2fa1c08de4b7766 277 PANTHER PTHR33393:SF3 8 274 3.7E-21 T 14-09-2016 ccrud_RS13385 5dde3478c2b1295cf2fa1c08de4b7766 277 PANTHER PTHR33393 8 274 3.7E-21 T 14-09-2016 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 7.5E-25 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 194 212 7.5E-25 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 225 246 7.5E-25 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 7.5E-25 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 Pfam PF09190 DALR domain 339 392 4.4E-9 T 14-09-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 16 314 5.9E-119 T 14-09-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 Gene3D G3DSA:3.40.50.620 20 307 2.6E-96 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 SUPERFAMILY SSF47323 320 459 1.31E-30 T 14-09-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 PANTHER PTHR10890 3 459 3.5E-197 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 458 2.1E-131 T 14-09-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 SMART SM00840 339 398 4.5E-14 T 14-09-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 Gene3D G3DSA:1.20.120.640 309 391 2.9E-15 T 14-09-2016 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 SUPERFAMILY SSF52374 4 314 1.53E-86 T 14-09-2016 ccrud_RS11915 f9ea7559dabe82de60651e3e8e7e14b0 460 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 460 35.023 T 14-09-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 ccrud_RS12110 1b4edfc99d324f3f26995fcc5d2b6c28 266 PANTHER PTHR21299 9 253 3.6E-25 T 14-09-2016 ccrud_RS12110 1b4edfc99d324f3f26995fcc5d2b6c28 266 SUPERFAMILY SSF52374 6 256 5.28E-45 T 14-09-2016 ccrud_RS12110 1b4edfc99d324f3f26995fcc5d2b6c28 266 Gene3D G3DSA:3.40.50.620 5 156 3.7E-17 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS12110 1b4edfc99d324f3f26995fcc5d2b6c28 266 PANTHER PTHR21299:SF1 9 253 3.6E-25 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 ccrud_RS12110 1b4edfc99d324f3f26995fcc5d2b6c28 266 Gene3D G3DSA:3.30.1300.10 157 260 8.6E-19 T 14-09-2016 ccrud_RS12110 1b4edfc99d324f3f26995fcc5d2b6c28 266 Pfam PF02569 Pantoate-beta-alanine ligase 112 253 4.5E-21 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 ccrud_RS12110 1b4edfc99d324f3f26995fcc5d2b6c28 266 Pfam PF02569 Pantoate-beta-alanine ligase 9 60 9.1E-6 T 14-09-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 ccrud_RS12780 dc1a47a40a5e9c5e16382fc8c7d53eee 304 Gene3D G3DSA:3.90.245.10 2 301 3.5E-70 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain ccrud_RS12780 dc1a47a40a5e9c5e16382fc8c7d53eee 304 PANTHER PTHR12304 2 300 2.7E-48 T 14-09-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase ccrud_RS12780 dc1a47a40a5e9c5e16382fc8c7d53eee 304 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 281 5.7E-52 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain ccrud_RS12780 dc1a47a40a5e9c5e16382fc8c7d53eee 304 SUPERFAMILY SSF53590 1 300 7.46E-71 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain ccrud_RS12250 dd54e5038cac5402544bc139fdf78491 299 PANTHER PTHR34383 48 297 6.5E-134 T 14-09-2016 ccrud_RS12250 dd54e5038cac5402544bc139fdf78491 299 SUPERFAMILY SSF52540 84 266 4.55E-25 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12250 dd54e5038cac5402544bc139fdf78491 299 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 54 278 2.9E-96 T 14-09-2016 IPR022488 Polyphosphate kinase-2-related ccrud_RS12250 dd54e5038cac5402544bc139fdf78491 299 PANTHER PTHR34383:SF2 48 297 6.5E-134 T 14-09-2016 ccrud_RS12250 dd54e5038cac5402544bc139fdf78491 299 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 53 279 2.1E-109 T 14-09-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 ccrud_RS12250 dd54e5038cac5402544bc139fdf78491 299 Gene3D G3DSA:3.40.50.300 45 297 2.4E-99 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12970 cae39eee51b5a751610747465d74bc33 563 Pfam PF04294 VanW like protein 364 490 3.1E-44 T 14-09-2016 IPR007391 Vancomycin resistance VanW ccrud_RS12970 cae39eee51b5a751610747465d74bc33 563 PANTHER PTHR35788:SF1 16 560 2.5E-54 T 14-09-2016 ccrud_RS12970 cae39eee51b5a751610747465d74bc33 563 PANTHER PTHR35788 16 560 2.5E-54 T 14-09-2016 ccrud_RS12970 cae39eee51b5a751610747465d74bc33 563 Pfam PF12229 Putative peptidoglycan binding domain 254 326 1.3E-15 T 14-09-2016 IPR022029 Putative peptidoglycan binding domain ccrud_RS05330 f646021ac166d182d446ba84f3a69da1 188 Pfam PF04138 GtrA-like protein 21 139 2.8E-9 T 14-09-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 ccrud_RS05330 f646021ac166d182d446ba84f3a69da1 188 Pfam PF04138 GtrA-like protein 146 180 1.6E-6 T 14-09-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 ccrud_RS08985 3e24df10cf590fabfa68d6dc056fd446 692 Gene3D G3DSA:1.10.3210.10 358 529 8.4E-14 T 14-09-2016 IPR006674 HD domain ccrud_RS08985 3e24df10cf590fabfa68d6dc056fd446 692 Pfam PF01909 Nucleotidyltransferase domain 27 86 5.1E-5 T 14-09-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 ccrud_RS08985 3e24df10cf590fabfa68d6dc056fd446 692 Pfam PF01966 HD domain 384 475 7.8E-10 T 14-09-2016 IPR006674 HD domain ccrud_RS08985 3e24df10cf590fabfa68d6dc056fd446 692 SMART SM00471 379 512 9.3E-6 T 14-09-2016 IPR003607 HD/PDEase domain ccrud_RS08985 3e24df10cf590fabfa68d6dc056fd446 692 PANTHER PTHR13734 291 508 2.8E-47 T 14-09-2016 ccrud_RS08985 3e24df10cf590fabfa68d6dc056fd446 692 PANTHER PTHR13734:SF45 291 508 2.8E-47 T 14-09-2016 ccrud_RS08985 3e24df10cf590fabfa68d6dc056fd446 692 SUPERFAMILY SSF81301 26 123 1.13E-11 T 14-09-2016 ccrud_RS08985 3e24df10cf590fabfa68d6dc056fd446 692 Gene3D G3DSA:3.30.460.10 29 112 2.2E-5 T 14-09-2016 ccrud_RS08985 3e24df10cf590fabfa68d6dc056fd446 692 SUPERFAMILY SSF109604 348 467 1.88E-12 T 14-09-2016 ccrud_RS13100 5e586701f0fa81f5484b75b2d71155f1 454 Pfam PF02720 Domain of unknown function (DUF222) 134 355 2.0E-14 T 14-09-2016 IPR003870 Domain of unknown function DUF222 ccrud_RS13100 5e586701f0fa81f5484b75b2d71155f1 454 Pfam PF01844 HNH endonuclease 365 406 2.6E-9 T 14-09-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 ccrud_RS13100 5e586701f0fa81f5484b75b2d71155f1 454 SMART SM00507 349 401 2.5E-4 T 14-09-2016 IPR003615 HNH nuclease ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 Pfam PF07690 Major Facilitator Superfamily 6 394 1.7E-38 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 PANTHER PTHR23501 1 442 5.4E-73 T 14-09-2016 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 Pfam PF00571 CBS domain 458 512 7.0E-9 T 14-09-2016 IPR000644 CBS domain ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 Pfam PF00571 CBS domain 547 595 4.5E-5 T 14-09-2016 IPR000644 CBS domain ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 Gene3D G3DSA:3.10.580.10 458 597 1.4E-21 T 14-09-2016 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 SMART SM00116 551 600 0.27 T 14-09-2016 IPR000644 CBS domain ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 SMART SM00116 464 512 4.7E-5 T 14-09-2016 IPR000644 CBS domain ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 SUPERFAMILY SSF103473 233 445 2.75E-47 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 SUPERFAMILY SSF103473 2 184 2.75E-47 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 PRINTS PR01036 Tetracycline resistance protein TetB signature 4 28 2.1E-6 T 14-09-2016 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 PRINTS PR01036 Tetracycline resistance protein TetB signature 64 86 2.1E-6 T 14-09-2016 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 PRINTS PR01036 Tetracycline resistance protein TetB signature 287 311 2.1E-6 T 14-09-2016 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 PRINTS PR01036 Tetracycline resistance protein TetB signature 125 149 2.1E-6 T 14-09-2016 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 PRINTS PR01036 Tetracycline resistance protein TetB signature 252 277 2.1E-6 T 14-09-2016 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 SUPERFAMILY SSF54631 455 601 1.64E-22 T 14-09-2016 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 Gene3D G3DSA:1.20.1250.20 249 445 1.5E-16 T 14-09-2016 ccrud_RS12080 fbb14e8639efec5d31406611271c9e4b 608 Gene3D G3DSA:1.20.1250.20 4 177 8.2E-22 T 14-09-2016 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 SUPERFAMILY SSF46934 5 55 6.8E-15 T 14-09-2016 IPR009060 UBA-like GO:0005515 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 PANTHER PTHR11741 1 273 5.2E-95 T 14-09-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 Pfam PF00889 Elongation factor TS 68 274 1.2E-64 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 14-09-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 ProSitePatterns PS01127 Elongation factor Ts signature 2. 71 81 - T 14-09-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 Gene3D G3DSA:1.10.286.20 194 237 2.8E-20 T 14-09-2016 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 Gene3D G3DSA:3.30.479.20 146 189 9.3E-21 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 Gene3D G3DSA:3.30.479.20 238 273 9.3E-21 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 Gene3D G3DSA:3.30.479.20 58 141 3.3E-13 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 SUPERFAMILY SSF54713 57 88 1.31E-39 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 SUPERFAMILY SSF54713 177 273 1.31E-39 T 14-09-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 Hamap MF_00050 Elongation factor Ts [tsf]. 1 275 65.028 T 14-09-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 Gene3D G3DSA:1.10.8.10 3 55 3.9E-23 T 14-09-2016 ccrud_RS08820 0ecd0cc4ce26f5ea925cb81c091dfd61 275 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 274 1.9E-72 T 14-09-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 ccrud_RS01895 f836f4f69a1eb29c2491bf5a261cb721 88 Gene3D G3DSA:1.10.10.60 3 84 1.4E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS01895 f836f4f69a1eb29c2491bf5a261cb721 88 Pfam PF01527 Transposase 2 76 1.8E-11 T 14-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 ccrud_RS01895 f836f4f69a1eb29c2491bf5a261cb721 88 SUPERFAMILY SSF46689 2 87 5.73E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS01875 f836f4f69a1eb29c2491bf5a261cb721 88 Gene3D G3DSA:1.10.10.60 3 84 1.4E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS01875 f836f4f69a1eb29c2491bf5a261cb721 88 Pfam PF01527 Transposase 2 76 1.8E-11 T 14-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 ccrud_RS01875 f836f4f69a1eb29c2491bf5a261cb721 88 SUPERFAMILY SSF46689 2 87 5.73E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS02875 c4a5e3a459ad5c6da39fc8cbcc02172b 317 PANTHER PTHR10366 2 298 1.4E-109 T 14-09-2016 ccrud_RS02875 c4a5e3a459ad5c6da39fc8cbcc02172b 317 Gene3D G3DSA:3.40.50.720 1 171 1.3E-43 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02875 c4a5e3a459ad5c6da39fc8cbcc02172b 317 SUPERFAMILY SSF51735 1 311 2.48E-81 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS02875 c4a5e3a459ad5c6da39fc8cbcc02172b 317 PANTHER PTHR10366:SF323 2 298 1.4E-109 T 14-09-2016 ccrud_RS02875 c4a5e3a459ad5c6da39fc8cbcc02172b 317 Gene3D G3DSA:3.90.25.10 172 309 1.4E-49 T 14-09-2016 ccrud_RS02875 c4a5e3a459ad5c6da39fc8cbcc02172b 317 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 238 1.4E-47 T 14-09-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 ccrud_RS01410 ef165d8ebc9baba4fd1811d1b91feb68 222 SUPERFAMILY SSF52172 2 180 9.21E-37 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS01410 ef165d8ebc9baba4fd1811d1b91feb68 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 154 221 3.6E-23 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS01410 ef165d8ebc9baba4fd1811d1b91feb68 222 Gene3D G3DSA:3.40.50.2300 2 122 2.0E-34 T 14-09-2016 ccrud_RS01410 ef165d8ebc9baba4fd1811d1b91feb68 222 Pfam PF00072 Response regulator receiver domain 4 114 2.5E-25 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS01410 ef165d8ebc9baba4fd1811d1b91feb68 222 PANTHER PTHR26402 2 222 3.3E-78 T 14-09-2016 ccrud_RS01410 ef165d8ebc9baba4fd1811d1b91feb68 222 Gene3D G3DSA:1.10.10.10 126 222 1.2E-30 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS01410 ef165d8ebc9baba4fd1811d1b91feb68 222 SMART SM00448 2 113 1.4E-36 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS01410 ef165d8ebc9baba4fd1811d1b91feb68 222 SMART SM00862 150 221 2.0E-23 T 14-09-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 ccrud_RS01410 ef165d8ebc9baba4fd1811d1b91feb68 222 PANTHER PTHR26402:SF578 2 222 3.3E-78 T 14-09-2016 ccrud_RS03845 8762cb81e6e58a92b2dd538b6f12f1b4 299 SUPERFAMILY SSF51366 23 272 1.69E-59 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS03845 8762cb81e6e58a92b2dd538b6f12f1b4 299 TIGRFAM TIGR00343 TIGR00343: pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 14 299 3.0E-144 T 14-09-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 ccrud_RS03845 8762cb81e6e58a92b2dd538b6f12f1b4 299 PIRSF PIRSF029271 1 299 2.5E-151 T 14-09-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 ccrud_RS03845 8762cb81e6e58a92b2dd538b6f12f1b4 299 ProSitePatterns PS01235 PdxS/SNZ family signature. 210 228 - T 14-09-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 ccrud_RS03845 8762cb81e6e58a92b2dd538b6f12f1b4 299 Hamap MF_01824 Pyridoxal 5'-phosphate synthase subunit PdxS [pdxS]. 9 299 51.642 T 14-09-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 ccrud_RS03845 8762cb81e6e58a92b2dd538b6f12f1b4 299 Pfam PF01680 SOR/SNZ family 12 217 1.5E-108 T 14-09-2016 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ GO:0042819|GO:0042823 KEGG: 00750+4.3.3.6|MetaCyc: PWY-6466|UniPathway: UPA00245 ccrud_RS03845 8762cb81e6e58a92b2dd538b6f12f1b4 299 PANTHER PTHR31829 11 299 3.0E-209 T 14-09-2016 ccrud_RS03845 8762cb81e6e58a92b2dd538b6f12f1b4 299 Gene3D G3DSA:3.20.20.70 197 283 7.0E-47 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS03845 8762cb81e6e58a92b2dd538b6f12f1b4 299 Gene3D G3DSA:3.20.20.70 29 165 7.0E-47 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS11820 972ee4622141cacc82af3c70977bde17 320 Pfam PF16654 Diaminopimelic acid dehydrogenase C-terminal domain 118 268 2.1E-66 T 14-09-2016 IPR032094 Meso-diaminopimelate D-dehydrogenase, C-terminal KEGG: 00300+1.4.1.16|MetaCyc: PWY-2942|UniPathway: UPA00034 ccrud_RS11820 972ee4622141cacc82af3c70977bde17 320 TIGRFAM TIGR01921 DAP-DH: diaminopimelate dehydrogenase 1 320 3.1E-161 T 14-09-2016 IPR010190 Diaminopimelate dehydrogenase, Ddh GO:0009089|GO:0047850 KEGG: 00300+1.4.1.16|MetaCyc: PWY-2942|UniPathway: UPA00034 ccrud_RS11820 972ee4622141cacc82af3c70977bde17 320 Gene3D G3DSA:3.40.50.720 1 151 1.2E-30 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11820 972ee4622141cacc82af3c70977bde17 320 SUPERFAMILY SSF51735 4 144 2.65E-22 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11820 972ee4622141cacc82af3c70977bde17 320 SUPERFAMILY SSF55347 119 268 9.81E-62 T 14-09-2016 ccrud_RS11820 972ee4622141cacc82af3c70977bde17 320 PIRSF PIRSF025648 1 320 8.7E-157 T 14-09-2016 IPR010190 Diaminopimelate dehydrogenase, Ddh GO:0009089|GO:0047850 KEGG: 00300+1.4.1.16|MetaCyc: PWY-2942|UniPathway: UPA00034 ccrud_RS11820 972ee4622141cacc82af3c70977bde17 320 Gene3D G3DSA:3.30.360.10 152 268 6.7E-40 T 14-09-2016 ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 Pfam PF01966 HD domain 67 214 2.1E-15 T 14-09-2016 IPR006674 HD domain ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 30 406 1.9E-75 T 14-09-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 SMART SM00471 63 226 2.1E-13 T 14-09-2016 IPR003607 HD/PDEase domain ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 Gene3D G3DSA:1.10.3210.10 19 212 8.5E-63 T 14-09-2016 IPR006674 HD domain ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 Gene3D G3DSA:1.10.3410.10 213 344 4.8E-18 T 14-09-2016 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 PANTHER PTHR11373 28 165 1.0E-40 T 14-09-2016 ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 Hamap MF_01212 Deoxyguanosinetriphosphate triphosphohydrolase-like protein. 1 417 31.046 T 14-09-2016 IPR023023 Deoxyguanosinetriphosphate triphosphohydrolase, type 2 ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 Pfam PF13286 Phosphohydrolase-associated domain 325 413 5.4E-16 T 14-09-2016 IPR026875 Phosphohydrolase-associated domain ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 SUPERFAMILY SSF109604 27 167 8.96E-58 T 14-09-2016 ccrud_RS10025 4e32908aebfcf31ac2a8d81ff56feb51 424 SUPERFAMILY SSF109604 197 242 8.96E-58 T 14-09-2016 ccrud_RS06815 d48cdc12d3b3aa55ca7d6975f26a0196 290 Pfam PF13614 AAA domain 37 213 5.5E-62 T 14-09-2016 IPR025669 AAA domain ccrud_RS06815 d48cdc12d3b3aa55ca7d6975f26a0196 290 Gene3D G3DSA:3.40.50.300 37 289 2.8E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06815 d48cdc12d3b3aa55ca7d6975f26a0196 290 PANTHER PTHR13696 19 287 7.4E-97 T 14-09-2016 ccrud_RS06815 d48cdc12d3b3aa55ca7d6975f26a0196 290 PANTHER PTHR13696:SF78 19 287 7.4E-97 T 14-09-2016 ccrud_RS06815 d48cdc12d3b3aa55ca7d6975f26a0196 290 SUPERFAMILY SSF52540 36 287 2.66E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00450 ee241bf5573d31d91258f40028a76448 300 Gene3D G3DSA:3.40.50.1820 60 295 1.3E-48 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00450 ee241bf5573d31d91258f40028a76448 300 SUPERFAMILY SSF53474 64 290 7.97E-31 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00450 ee241bf5573d31d91258f40028a76448 300 Pfam PF00561 alpha/beta hydrolase fold 72 172 1.1E-11 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 Pfam PF13288 DXP reductoisomerase C-terminal domain 259 376 4.5E-34 T 14-09-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 SUPERFAMILY SSF51735 3 147 4.96E-31 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 5 381 42.816 T 14-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 PANTHER PTHR30525 3 389 1.2E-172 T 14-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 PIRSF PIRSF006205 2 388 7.2E-140 T 14-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 SUPERFAMILY SSF55347 125 261 1.93E-51 T 14-09-2016 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3 380 2.0E-106 T 14-09-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 Gene3D G3DSA:1.10.1740.10 301 383 2.1E-27 T 14-09-2016 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 5 131 1.4E-36 T 14-09-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 SUPERFAMILY SSF69055 290 384 1.44E-24 T 14-09-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 Gene3D G3DSA:3.40.50.720 2 147 7.5E-45 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS08775 1df030d0c7e20b19e7d27eb13201b0c1 389 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 143 226 7.7E-35 T 14-09-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS02655 380251c1a26dc0af2b73691f9c0cb1f7 228 Pfam PF14041 LppP/LprE lipoprotein 115 205 4.6E-12 T 14-09-2016 IPR025971 LppP/LprE lipoprotein ccrud_RS00535 2b173d1d43470c1daf09e5ce102488f7 388 SUPERFAMILY SSF103473 7 377 3.92E-29 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS00535 2b173d1d43470c1daf09e5ce102488f7 388 Pfam PF07690 Major Facilitator Superfamily 14 312 9.8E-17 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS00535 2b173d1d43470c1daf09e5ce102488f7 388 Gene3D G3DSA:1.20.1250.20 247 377 1.2E-4 T 14-09-2016 ccrud_RS00535 2b173d1d43470c1daf09e5ce102488f7 388 Gene3D G3DSA:1.20.1250.20 8 181 1.3E-14 T 14-09-2016 ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 SUPERFAMILY SSF54211 91 187 2.4E-27 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 65 78 - T 14-09-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 164 176 - T 14-09-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 PANTHER PTHR23133:SF2 2 202 6.2E-87 T 14-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 Gene3D G3DSA:3.30.230.40 6 93 2.1E-35 T 14-09-2016 ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 6 202 41.387 T 14-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 PANTHER PTHR23133 2 202 6.2E-87 T 14-09-2016 ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 35 182 3.3E-57 T 14-09-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 SUPERFAMILY SSF54211 6 90 6.45E-32 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS09190 5d5cf4dabbb807dd53c85bc37d9df196 202 Gene3D G3DSA:3.30.230.40 94 202 1.2E-28 T 14-09-2016 ccrud_RS05810 cfbfc21dd0bf2e7f93d261eba697622c 382 PANTHER PTHR22926:SF3 11 378 1.5E-77 T 14-09-2016 ccrud_RS05810 cfbfc21dd0bf2e7f93d261eba697622c 382 Pfam PF00953 Glycosyl transferase family 4 93 254 1.8E-30 T 14-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS05810 cfbfc21dd0bf2e7f93d261eba697622c 382 PANTHER PTHR22926 11 378 1.5E-77 T 14-09-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 ccrud_RS08465 ccde3989da7e015cad1fbf697bbaf02c 201 PIRSF PIRSF016661 9 201 2.2E-47 T 14-09-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 ccrud_RS08465 ccde3989da7e015cad1fbf697bbaf02c 201 Pfam PF02632 BioY family 49 192 8.7E-27 T 14-09-2016 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 ccrud_RS08465 ccde3989da7e015cad1fbf697bbaf02c 201 PANTHER PTHR34295 4 191 1.5E-28 T 14-09-2016 ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 SUPERFAMILY SSF46785 14 73 1.01E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 PANTHER PTHR30154 6 154 4.6E-43 T 14-09-2016 ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 SUPERFAMILY SSF54909 77 155 4.56E-14 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 Gene3D G3DSA:1.10.10.10 12 63 5.7E-19 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 PANTHER PTHR30154:SF28 6 154 4.6E-43 T 14-09-2016 ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 41 60 2.9E-11 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 14 30 2.9E-11 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 30 41 2.9E-11 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 SMART SM00344 14 123 2.5E-27 T 14-09-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 Pfam PF01037 Lrp/AsnC ligand binding domain 81 152 6.5E-14 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 Pfam PF13404 AsnC-type helix-turn-helix domain 14 55 1.5E-15 T 14-09-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 ccrud_RS06990 55741291f16750179477c1572b7f3d81 164 Gene3D G3DSA:3.30.70.920 67 153 6.0E-19 T 14-09-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain ccrud_RS09750 01785bc5aa28598d6586542ccbbc81f0 111 Gene3D G3DSA:3.40.50.620 1 73 2.0E-11 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS09750 01785bc5aa28598d6586542ccbbc81f0 111 Pfam PF02698 DUF218 domain 1 71 3.6E-14 T 14-09-2016 IPR003848 Domain of unknown function DUF218 ccrud_RS09750 01785bc5aa28598d6586542ccbbc81f0 111 PANTHER PTHR30336:SF2 1 77 5.1E-13 T 14-09-2016 ccrud_RS09750 01785bc5aa28598d6586542ccbbc81f0 111 PANTHER PTHR30336 1 77 5.1E-13 T 14-09-2016 ccrud_RS10710 1ac1f34ef5f7606538f42c767c4582ba 164 PANTHER PTHR41534 1 164 3.0E-66 T 14-09-2016 ccrud_RS10710 1ac1f34ef5f7606538f42c767c4582ba 164 Gene3D G3DSA:3.10.450.50 2 157 5.3E-53 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS10710 1ac1f34ef5f7606538f42c767c4582ba 164 SUPERFAMILY SSF54427 1 163 1.63E-51 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS10710 1ac1f34ef5f7606538f42c767c4582ba 164 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 9 164 2.2E-83 T 14-09-2016 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0016708|GO:0055114 ccrud_RS10710 1ac1f34ef5f7606538f42c767c4582ba 164 Pfam PF00866 Ring hydroxylating beta subunit 16 156 3.2E-44 T 14-09-2016 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0003824|GO:0006725|GO:0055114 ccrud_RS10710 1ac1f34ef5f7606538f42c767c4582ba 164 PANTHER PTHR41534:SF1 1 164 3.0E-66 T 14-09-2016 ccrud_RS02645 067cee474bfd95f84b0da9929e3fdcb7 76 Gene3D G3DSA:1.10.287.310 7 68 1.1E-29 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02645 067cee474bfd95f84b0da9929e3fdcb7 76 ProSitePatterns PS00579 Ribosomal protein L29 signature. 43 57 - T 14-09-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02645 067cee474bfd95f84b0da9929e3fdcb7 76 Pfam PF00831 Ribosomal L29 protein 9 64 1.1E-24 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02645 067cee474bfd95f84b0da9929e3fdcb7 76 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 5 64 17.451 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02645 067cee474bfd95f84b0da9929e3fdcb7 76 PANTHER PTHR10916 7 66 5.3E-22 T 14-09-2016 ccrud_RS02645 067cee474bfd95f84b0da9929e3fdcb7 76 TIGRFAM TIGR00012 L29: ribosomal protein uL29 9 64 8.8E-22 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02645 067cee474bfd95f84b0da9929e3fdcb7 76 SUPERFAMILY SSF46561 7 67 1.83E-22 T 14-09-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02300 824d0a152f75b19bd06a96876e40bf73 332 PANTHER PTHR30071 76 332 2.5E-60 T 14-09-2016 ccrud_RS02300 824d0a152f75b19bd06a96876e40bf73 332 PANTHER PTHR30071:SF5 76 332 2.5E-60 T 14-09-2016 ccrud_RS02300 824d0a152f75b19bd06a96876e40bf73 332 TIGRFAM TIGR03144 cytochr_II_ccsB: cytochrome c-type biogenesis protein CcsB 93 329 1.2E-70 T 14-09-2016 IPR017562 Cytochrome c-type biogenesis protein CcsA GO:0017004 ccrud_RS02300 824d0a152f75b19bd06a96876e40bf73 332 Pfam PF01578 Cytochrome C assembly protein 117 326 6.9E-39 T 14-09-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 ccrud_RS08600 049fc52d1ccd215afe262ef72f0de0d5 217 PANTHER PTHR38096 25 216 3.4E-42 T 14-09-2016 ccrud_RS08600 049fc52d1ccd215afe262ef72f0de0d5 217 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 109 213 8.5E-11 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 ccrud_RS08600 049fc52d1ccd215afe262ef72f0de0d5 217 Gene3D G3DSA:3.90.470.20 131 190 2.0E-5 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 ccrud_RS08600 049fc52d1ccd215afe262ef72f0de0d5 217 PRINTS PR01399 Enterobactin synthetase component D signature 150 166 1.6E-10 T 14-09-2016 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 UniPathway: UPA00017 ccrud_RS08600 049fc52d1ccd215afe262ef72f0de0d5 217 PRINTS PR01399 Enterobactin synthetase component D signature 43 63 1.6E-10 T 14-09-2016 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 UniPathway: UPA00017 ccrud_RS08600 049fc52d1ccd215afe262ef72f0de0d5 217 SUPERFAMILY SSF56214 106 214 2.62E-15 T 14-09-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 SUPERFAMILY SSF88946 1 68 1.18E-8 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 SUPERFAMILY SSF54427 159 273 1.6E-8 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 SUPERFAMILY SSF88659 88 148 5.98E-10 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 Gene3D G3DSA:3.10.450.50 157 270 1.7E-5 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 Pfam PF08281 Sigma-70, region 4 95 146 2.5E-10 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 Gene3D G3DSA:1.10.10.10 89 149 6.4E-11 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 Pfam PF04542 Sigma-70 region 2 1 54 1.0E-5 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 PANTHER PTHR30173:SF11 1 276 1.3E-81 T 14-09-2016 ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 PANTHER PTHR30173 1 276 1.3E-81 T 14-09-2016 ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 6 149 7.2E-14 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS00225 7a467dc242bcb50405ffb94241e8712e 276 Gene3D G3DSA:1.10.1740.10 1 62 9.3E-8 T 14-09-2016 ccrud_RS05370 ba4d1fe8ddd05aa6035b08e47391c4cd 243 SUPERFAMILY SSF53448 4 227 1.4E-52 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS05370 ba4d1fe8ddd05aa6035b08e47391c4cd 243 Gene3D G3DSA:3.90.550.10 3 128 1.1E-15 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS05370 ba4d1fe8ddd05aa6035b08e47391c4cd 243 PANTHER PTHR10859 3 164 4.5E-22 T 14-09-2016 ccrud_RS05370 ba4d1fe8ddd05aa6035b08e47391c4cd 243 PANTHER PTHR10859:SF99 3 164 4.5E-22 T 14-09-2016 ccrud_RS05370 ba4d1fe8ddd05aa6035b08e47391c4cd 243 Pfam PF00535 Glycosyl transferase family 2 5 129 1.2E-16 T 14-09-2016 IPR001173 Glycosyltransferase 2-like ccrud_RS05870 403eea4b7aed46beb65c9d3b6fbcd4e8 151 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 16 148 3.1E-44 T 14-09-2016 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384 ccrud_RS05870 403eea4b7aed46beb65c9d3b6fbcd4e8 151 Gene3D G3DSA:3.10.180.10 17 148 4.2E-36 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS05870 403eea4b7aed46beb65c9d3b6fbcd4e8 151 PANTHER PTHR21366:SF0 17 148 7.8E-30 T 14-09-2016 ccrud_RS05870 403eea4b7aed46beb65c9d3b6fbcd4e8 151 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 18 133 8.5E-19 T 14-09-2016 ccrud_RS05870 403eea4b7aed46beb65c9d3b6fbcd4e8 151 SUPERFAMILY SSF54593 14 149 1.24E-31 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS05870 403eea4b7aed46beb65c9d3b6fbcd4e8 151 PANTHER PTHR21366 17 148 7.8E-30 T 14-09-2016 ccrud_RS04715 6fb40e830f630fa25f7fd12351374892 249 SUPERFAMILY SSF46785 9 76 5.88E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04715 6fb40e830f630fa25f7fd12351374892 249 Pfam PF09339 IclR helix-turn-helix domain 9 58 2.2E-12 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS04715 6fb40e830f630fa25f7fd12351374892 249 PANTHER PTHR30136 8 248 1.1E-34 T 14-09-2016 ccrud_RS04715 6fb40e830f630fa25f7fd12351374892 249 PANTHER PTHR30136:SF3 8 248 1.1E-34 T 14-09-2016 ccrud_RS04715 6fb40e830f630fa25f7fd12351374892 249 Pfam PF01614 Bacterial transcriptional regulator 139 246 3.1E-17 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal ccrud_RS04715 6fb40e830f630fa25f7fd12351374892 249 Gene3D G3DSA:1.10.10.10 7 74 3.7E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04715 6fb40e830f630fa25f7fd12351374892 249 SUPERFAMILY SSF55781 63 248 1.63E-28 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS04715 6fb40e830f630fa25f7fd12351374892 249 SMART SM00346 7 95 9.8E-7 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS04715 6fb40e830f630fa25f7fd12351374892 249 Gene3D G3DSA:3.30.450.40 75 248 7.5E-30 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS07645 c6520c538c02d6ea66bb7d41e799fb62 382 PIRSF PIRSF001439 7 376 1.1E-81 T 14-09-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin ccrud_RS07645 c6520c538c02d6ea66bb7d41e799fb62 382 Gene3D G3DSA:3.40.50.720 171 348 6.0E-32 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07645 c6520c538c02d6ea66bb7d41e799fb62 382 PANTHER PTHR13812:SF19 1 378 1.3E-47 T 14-09-2016 ccrud_RS07645 c6520c538c02d6ea66bb7d41e799fb62 382 SUPERFAMILY SSF51735 9 379 9.05E-69 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07645 c6520c538c02d6ea66bb7d41e799fb62 382 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 26 367 5.2E-123 T 14-09-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin ccrud_RS07645 c6520c538c02d6ea66bb7d41e799fb62 382 Gene3D G3DSA:3.30.1780.10 12 170 2.1E-38 T 14-09-2016 IPR023401 Ornithine cyclodeaminase, N-terminal ccrud_RS07645 c6520c538c02d6ea66bb7d41e799fb62 382 PANTHER PTHR13812 1 378 1.3E-47 T 14-09-2016 ccrud_RS01825 86a0e84498c4544256ae78f0e7e676a3 466 PANTHER PTHR32309 67 456 1.9E-72 T 14-09-2016 ccrud_RS01825 86a0e84498c4544256ae78f0e7e676a3 466 Gene3D G3DSA:3.40.50.300 265 436 3.3E-35 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01825 86a0e84498c4544256ae78f0e7e676a3 466 TIGRFAM TIGR01007 eps_fam: capsular exopolysaccharide family 245 449 5.9E-48 T 14-09-2016 IPR005702 Exopolysaccharide synthesis protein GO:0045226 ccrud_RS01825 86a0e84498c4544256ae78f0e7e676a3 466 PANTHER PTHR32309:SF13 67 456 1.9E-72 T 14-09-2016 ccrud_RS01825 86a0e84498c4544256ae78f0e7e676a3 466 SUPERFAMILY SSF52540 265 436 1.58E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01825 86a0e84498c4544256ae78f0e7e676a3 466 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 267 435 1.4E-12 T 14-09-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain ccrud_RS01825 86a0e84498c4544256ae78f0e7e676a3 466 Pfam PF02706 Chain length determinant protein 2 133 2.6E-21 T 14-09-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 182 194 8.2E-6 T 14-09-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 60 75 8.2E-6 T 14-09-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 PRINTS PR00722 Chymotrypsin serine protease family (S1) signature 103 117 8.2E-6 T 14-09-2016 IPR001314 Peptidase S1A, chymotrypsin family GO:0004252|GO:0006508 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 SUPERFAMILY SSF50494 44 236 3.14E-29 T 14-09-2016 IPR009003 Peptidase S1, PA clan ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 Gene3D G3DSA:2.40.10.10 127 195 8.4E-7 T 14-09-2016 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 PANTHER PTHR24256 49 240 4.4E-14 T 14-09-2016 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 Gene3D G3DSA:2.40.10.10 49 126 1.4E-9 T 14-09-2016 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 Gene3D G3DSA:2.40.10.10 196 237 1.4E-7 T 14-09-2016 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 Pfam PF00089 Trypsin 46 232 1.9E-20 T 14-09-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 SMART SM00020 37 232 2.1E-6 T 14-09-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 ccrud_RS05275 20cf18c87dc13a43ca8a5a280ed07540 280 PANTHER PTHR24256:SF125 49 240 4.4E-14 T 14-09-2016 ccrud_RS06975 72ad8417bc8fa8646114abcec0743a5f 255 PANTHER PTHR30204:SF9 30 107 9.9E-33 T 14-09-2016 ccrud_RS06975 72ad8417bc8fa8646114abcec0743a5f 255 SUPERFAMILY SSF46955 41 110 6.23E-15 T 14-09-2016 IPR009061 Putative DNA-binding domain ccrud_RS06975 72ad8417bc8fa8646114abcec0743a5f 255 SMART SM00422 30 104 3.8E-21 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS06975 72ad8417bc8fa8646114abcec0743a5f 255 PANTHER PTHR30204 30 107 9.9E-33 T 14-09-2016 ccrud_RS06975 72ad8417bc8fa8646114abcec0743a5f 255 Gene3D G3DSA:1.10.1660.10 30 108 3.0E-19 T 14-09-2016 ccrud_RS06975 72ad8417bc8fa8646114abcec0743a5f 255 Pfam PF00376 MerR family regulatory protein 31 72 1.8E-14 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS12975 e43074f96b72f19b93be6163dddacf62 382 Gene3D G3DSA:3.20.20.300 78 374 1.7E-64 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ccrud_RS12975 e43074f96b72f19b93be6163dddacf62 382 SUPERFAMILY SSF51445 100 375 3.16E-56 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS12975 e43074f96b72f19b93be6163dddacf62 382 PANTHER PTHR30480 41 372 4.1E-62 T 14-09-2016 ccrud_RS12975 e43074f96b72f19b93be6163dddacf62 382 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 60 372 9.7E-59 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ccrud_RS12975 e43074f96b72f19b93be6163dddacf62 382 PANTHER PTHR30480:SF7 41 372 4.1E-62 T 14-09-2016 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 Pfam PF00580 UvrD/REP helicase N-terminal domain 125 270 1.2E-24 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 Pfam PF00580 UvrD/REP helicase N-terminal domain 8 72 4.3E-21 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 Pfam PF13361 UvrD-like helicase C-terminal domain 431 543 2.7E-22 T 14-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 Pfam PF13361 UvrD-like helicase C-terminal domain 277 417 4.2E-14 T 14-09-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 Pfam PF00570 HRDC domain 609 675 1.4E-22 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 SMART SM00341 605 678 1.2E-12 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 Gene3D G3DSA:3.40.50.300 479 563 3.0E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 Gene3D G3DSA:3.40.50.300 281 394 3.0E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 SUPERFAMILY SSF52540 5 563 4.49E-121 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 PANTHER PTHR11070:SF21 4 566 9.2E-262 T 14-09-2016 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 PANTHER PTHR11070 4 566 9.2E-262 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 Gene3D G3DSA:1.10.150.80 608 675 2.5E-14 T 14-09-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 Gene3D G3DSA:3.40.50.300 6 273 4.0E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03795 ced937c149ea9e752c23c376573db0b6 678 SUPERFAMILY SSF47819 606 676 6.76E-20 T 14-09-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 ccrud_RS13470 b004a354ac4f38ba8cfbdfbce34182f1 68 Pfam PF00403 Heavy-metal-associated domain 7 64 1.5E-9 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ccrud_RS13470 b004a354ac4f38ba8cfbdfbce34182f1 68 Gene3D G3DSA:3.30.70.100 3 66 1.8E-16 T 14-09-2016 ccrud_RS13470 b004a354ac4f38ba8cfbdfbce34182f1 68 SUPERFAMILY SSF55008 3 66 1.15E-13 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 PANTHER PTHR22993:SF18 5 268 1.1E-45 T 14-09-2016 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 SUPERFAMILY SSF57716 221 268 2.55E-12 T 14-09-2016 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 SMART SM01232 123 215 1.5E-25 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 SMART SM00898 2 109 2.0E-18 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 Pfam PF06827 Zinc finger found in FPG and IleRS 244 268 1.0E-4 T 14-09-2016 IPR010663 Zinc finger, FPG/IleRS-type ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 Gene3D G3DSA:1.10.8.50 124 269 5.8E-40 T 14-09-2016 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 SUPERFAMILY SSF46946 122 205 2.06E-21 T 14-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 SUPERFAMILY SSF81624 2 124 4.58E-19 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 Gene3D G3DSA:3.20.190.10 2 123 4.7E-15 T 14-09-2016 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 123 207 1.0E-18 T 14-09-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 PANTHER PTHR22993 5 268 1.1E-45 T 14-09-2016 ccrud_RS13560 10aeefa442ca88f75f2732c48fd90460 269 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 95 5.2E-8 T 14-09-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 ccrud_RS00520 f2da549868ed1f73ba9c053946426e7b 283 Hamap MF_01384 Urease accessory protein UreD [ureD]. 6 269 23.99 T 14-09-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 ccrud_RS00520 f2da549868ed1f73ba9c053946426e7b 283 PANTHER PTHR33643:SF1 4 229 7.7E-34 T 14-09-2016 ccrud_RS00520 f2da549868ed1f73ba9c053946426e7b 283 PANTHER PTHR33643 4 229 7.7E-34 T 14-09-2016 ccrud_RS00520 f2da549868ed1f73ba9c053946426e7b 283 Pfam PF01774 UreD urease accessory protein 52 257 5.1E-40 T 14-09-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 ccrud_RS00285 36d6efbbbc9c6a8c93531393863d0a67 85 Pfam PF02583 Metal-sensitive transcriptional repressor 11 79 2.6E-23 T 14-09-2016 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 ccrud_RS00285 36d6efbbbc9c6a8c93531393863d0a67 85 PANTHER PTHR33677 1 84 2.9E-33 T 14-09-2016 ccrud_RS00285 36d6efbbbc9c6a8c93531393863d0a67 85 PANTHER PTHR33677:SF2 1 84 2.9E-33 T 14-09-2016 ccrud_RS11105 549e7974a50915238a22d99039b7a147 218 SMART SM00479 17 192 5.6E-27 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III ccrud_RS11105 549e7974a50915238a22d99039b7a147 218 PANTHER PTHR11046 15 200 6.5E-87 T 14-09-2016 ccrud_RS11105 549e7974a50915238a22d99039b7a147 218 Gene3D G3DSA:3.30.420.10 15 191 1.4E-67 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS11105 549e7974a50915238a22d99039b7a147 218 Hamap MF_00045 Oligoribonuclease [orn]. 13 193 37.694 T 14-09-2016 IPR022894 Oligoribonuclease GO:0016788 ccrud_RS11105 549e7974a50915238a22d99039b7a147 218 PANTHER PTHR11046:SF5 15 200 6.5E-87 T 14-09-2016 ccrud_RS11105 549e7974a50915238a22d99039b7a147 218 SUPERFAMILY SSF53098 12 191 1.97E-44 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS11105 549e7974a50915238a22d99039b7a147 218 Pfam PF00929 Exonuclease 19 182 2.8E-27 T 14-09-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III ccrud_RS07145 3bec54e6cd0378429313bb6acce6fb20 222 SUPERFAMILY SSF48371 2 221 2.22E-64 T 14-09-2016 IPR016024 Armadillo-type fold GO:0005488 ccrud_RS07145 3bec54e6cd0378429313bb6acce6fb20 222 Pfam PF08713 DNA alkylation repair enzyme 11 188 9.3E-21 T 14-09-2016 IPR014825 DNA alkylation repair enzyme ccrud_RS07145 3bec54e6cd0378429313bb6acce6fb20 222 PANTHER PTHR41291 4 220 3.6E-56 T 14-09-2016 ccrud_RS11370 f0619d375572f0d90c6ef4e893d60459 77 PANTHER PTHR34386 1 76 4.3E-32 T 14-09-2016 ccrud_RS11370 f0619d375572f0d90c6ef4e893d60459 77 Pfam PF00462 Glutaredoxin 3 61 5.2E-16 T 14-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 ccrud_RS11370 f0619d375572f0d90c6ef4e893d60459 77 PANTHER PTHR34386:SF3 1 76 4.3E-32 T 14-09-2016 ccrud_RS11370 f0619d375572f0d90c6ef4e893d60459 77 SUPERFAMILY SSF52833 1 72 1.22E-19 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11370 f0619d375572f0d90c6ef4e893d60459 77 Gene3D G3DSA:3.40.30.10 1 74 1.1E-27 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11370 f0619d375572f0d90c6ef4e893d60459 77 TIGRFAM TIGR02194 GlrX_NrdH: glutaredoxin-like protein NrdH 3 72 1.0E-30 T 14-09-2016 IPR011909 Glutaredoxin-like protein NrdH GO:0045454 ccrud_RS07875 a243d51eb5826931ee80a7821b08694f 364 PANTHER PTHR30472 24 360 2.3E-103 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS07875 a243d51eb5826931ee80a7821b08694f 364 SUPERFAMILY SSF81345 22 360 2.22E-77 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS07875 a243d51eb5826931ee80a7821b08694f 364 Pfam PF01032 FecCD transport family 38 360 2.8E-89 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS07875 a243d51eb5826931ee80a7821b08694f 364 PANTHER PTHR30472:SF32 24 360 2.3E-103 T 14-09-2016 ccrud_RS07875 a243d51eb5826931ee80a7821b08694f 364 Gene3D G3DSA:1.10.3470.10 24 362 9.2E-102 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS04185 cfbfd2ce431d08bfda43402a076b68ee 200 PANTHER PTHR30353 1 200 2.5E-66 T 14-09-2016 IPR032818 DedA family ccrud_RS04185 cfbfd2ce431d08bfda43402a076b68ee 200 Pfam PF09335 SNARE associated Golgi protein 31 157 7.1E-19 T 14-09-2016 IPR032816 SNARE associated Golgi protein ccrud_RS04185 cfbfd2ce431d08bfda43402a076b68ee 200 PANTHER PTHR30353:SF13 1 200 2.5E-66 T 14-09-2016 ccrud_RS12950 e0f1159237af02327d2c9f22bd96dbcf 319 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 314 2.0E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS12950 e0f1159237af02327d2c9f22bd96dbcf 319 Gene3D G3DSA:1.10.3720.10 91 312 2.5E-23 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS12950 e0f1159237af02327d2c9f22bd96dbcf 319 PANTHER PTHR30465 1 315 1.2E-84 T 14-09-2016 ccrud_RS12950 e0f1159237af02327d2c9f22bd96dbcf 319 PANTHER PTHR30465:SF24 1 315 1.2E-84 T 14-09-2016 ccrud_RS12950 e0f1159237af02327d2c9f22bd96dbcf 319 SUPERFAMILY SSF161098 90 297 8.24E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 PANTHER PTHR33406 324 783 9.5E-159 T 14-09-2016 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 SUPERFAMILY SSF82866 162 391 1.02E-22 T 14-09-2016 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 PANTHER PTHR33406 1 303 9.5E-159 T 14-09-2016 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 Gene3D G3DSA:1.20.1640.10 171 395 1.2E-25 T 14-09-2016 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 Gene3D G3DSA:1.20.1640.10 537 759 1.3E-32 T 14-09-2016 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 SUPERFAMILY SSF82866 512 753 2.09E-28 T 14-09-2016 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 PANTHER PTHR33406:SF5 324 783 9.5E-159 T 14-09-2016 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 Pfam PF03176 MMPL family 45 424 4.9E-43 T 14-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 Pfam PF03176 MMPL family 518 753 5.9E-33 T 14-09-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 ccrud_RS04570 885d956379e2d31e5ca91b87d36e87a4 794 PANTHER PTHR33406:SF5 1 303 9.5E-159 T 14-09-2016 ccrud_RS13905 9b3caf819b2751d6f7c221d9463dc81d 194 SUPERFAMILY SSF88659 124 184 2.62E-14 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS13905 9b3caf819b2751d6f7c221d9463dc81d 194 Pfam PF04542 Sigma-70 region 2 31 87 3.7E-10 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS13905 9b3caf819b2751d6f7c221d9463dc81d 194 Gene3D G3DSA:1.10.1740.10 6 114 7.1E-24 T 14-09-2016 ccrud_RS13905 9b3caf819b2751d6f7c221d9463dc81d 194 PANTHER PTHR30173 1 184 4.8E-36 T 14-09-2016 ccrud_RS13905 9b3caf819b2751d6f7c221d9463dc81d 194 PANTHER PTHR30173:SF24 1 184 4.8E-36 T 14-09-2016 ccrud_RS13905 9b3caf819b2751d6f7c221d9463dc81d 194 SUPERFAMILY SSF88946 5 110 2.2E-21 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS13905 9b3caf819b2751d6f7c221d9463dc81d 194 Pfam PF08281 Sigma-70, region 4 129 180 1.1E-13 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS13905 9b3caf819b2751d6f7c221d9463dc81d 194 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 26 182 3.2E-22 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS13905 9b3caf819b2751d6f7c221d9463dc81d 194 Gene3D G3DSA:1.10.10.10 128 184 1.7E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 Gene3D G3DSA:3.40.47.10 248 379 8.6E-23 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 Gene3D G3DSA:3.40.47.10 143 182 8.6E-23 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 Pfam PF02803 Thiolase, C-terminal domain 265 356 2.7E-10 T 14-09-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 SUPERFAMILY SSF53901 180 360 2.13E-41 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 SUPERFAMILY SSF53901 12 119 2.13E-41 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 Pfam PF00108 Thiolase, N-terminal domain 9 223 3.6E-24 T 14-09-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 Gene3D G3DSA:3.40.47.10 194 223 5.9E-23 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 Gene3D G3DSA:3.40.47.10 17 112 5.9E-23 T 14-09-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 PIRSF PIRSF000429 1 386 4.7E-56 T 14-09-2016 IPR002155 Thiolase GO:0008152|GO:0016747 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 PANTHER PTHR18919:SF8 1 388 3.8E-117 T 14-09-2016 ccrud_RS05635 eed6e096b360157d0834722b26b01901 390 PANTHER PTHR18919 1 388 3.8E-117 T 14-09-2016 ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Hamap MF_00204 UvrABC system protein B [uvrB]. 26 690 42.58 T 14-09-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 SMART SM00487 32 448 5.0E-28 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Pfam PF04851 Type III restriction enzyme, res subunit 35 161 4.6E-9 T 14-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Pfam PF12344 Ultra-violet resistance protein B 574 615 6.6E-23 T 14-09-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 SUPERFAMILY SSF46600 645 692 1.14E-10 T 14-09-2016 IPR001943 UVR domain GO:0005515 ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 27 688 0.0 T 14-09-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 SUPERFAMILY SSF52540 27 437 1.61E-128 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Gene3D G3DSA:3.40.50.300 31 112 3.1E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Gene3D G3DSA:3.40.50.300 410 431 3.1E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Gene3D G3DSA:3.40.50.300 300 360 3.1E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Pfam PF02151 UvrB/uvrC motif 656 690 1.1E-6 T 14-09-2016 IPR001943 UVR domain GO:0005515 ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Pfam PF00271 Helicase conserved C-terminal domain 457 567 1.6E-20 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 SMART SM00490 482 568 1.4E-18 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Gene3D G3DSA:3.40.50.300 441 604 6.5E-42 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Gene3D G3DSA:4.10.860.10 644 693 3.7E-15 T 14-09-2016 IPR001943 UVR domain GO:0005515 ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 PANTHER PTHR24029 22 699 0.0 T 14-09-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 SUPERFAMILY SSF52540 56 105 2.01E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 SUPERFAMILY SSF52540 481 603 2.01E-36 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06570 b63761f7aa578baddf1f8caaa4e7fef3 699 Gene3D G3DSA:3.30.2060.10 184 249 1.2E-10 T 14-09-2016 ccrud_RS09525 e64d4645cec56349dce1936cb46d3d5a 366 SUPERFAMILY SSF48576 17 365 1.12E-75 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS09525 e64d4645cec56349dce1936cb46d3d5a 366 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 98 112 - T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 ccrud_RS09525 e64d4645cec56349dce1936cb46d3d5a 366 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 242 254 - T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 ccrud_RS09525 e64d4645cec56349dce1936cb46d3d5a 366 PANTHER PTHR12001:SF45 134 366 4.4E-91 T 14-09-2016 ccrud_RS09525 e64d4645cec56349dce1936cb46d3d5a 366 PANTHER PTHR12001:SF45 20 117 4.4E-91 T 14-09-2016 ccrud_RS09525 e64d4645cec56349dce1936cb46d3d5a 366 Pfam PF00348 Polyprenyl synthetase 48 310 6.5E-53 T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 ccrud_RS09525 e64d4645cec56349dce1936cb46d3d5a 366 Gene3D G3DSA:1.10.600.10 13 365 4.1E-86 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS09525 e64d4645cec56349dce1936cb46d3d5a 366 PANTHER PTHR12001 20 117 4.4E-91 T 14-09-2016 IPR017446 Polyprenyl synthetase-related ccrud_RS09525 e64d4645cec56349dce1936cb46d3d5a 366 PANTHER PTHR12001 134 366 4.4E-91 T 14-09-2016 IPR017446 Polyprenyl synthetase-related ccrud_RS04775 239b92c0d808263b832d5f4199e952ea 426 SUPERFAMILY SSF53474 176 420 1.71E-26 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS04775 239b92c0d808263b832d5f4199e952ea 426 Pfam PF00756 Putative esterase 181 414 2.7E-17 T 14-09-2016 IPR000801 Putative esterase ccrud_RS04775 239b92c0d808263b832d5f4199e952ea 426 Gene3D G3DSA:3.40.50.1820 176 421 3.4E-42 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS02215 1b932564c90d87154f9f1f36e959600b 88 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 61 87 5.7E-7 T 14-09-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 ccrud_RS02215 1b932564c90d87154f9f1f36e959600b 88 SUPERFAMILY SSF54736 60 87 4.36E-5 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ccrud_RS02215 1b932564c90d87154f9f1f36e959600b 88 Gene3D G3DSA:3.30.1390.10 59 87 4.5E-7 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ccrud_RS00770 e849021d9c60f95e498b48081c0a38c6 97 Gene3D G3DSA:3.10.290.10 1 66 1.3E-26 T 14-09-2016 IPR002942 RNA-binding S4 domain GO:0003723 ccrud_RS00770 e849021d9c60f95e498b48081c0a38c6 97 PANTHER PTHR32319:SF3 7 64 7.2E-18 T 14-09-2016 ccrud_RS00770 e849021d9c60f95e498b48081c0a38c6 97 PANTHER PTHR32319 7 64 7.2E-18 T 14-09-2016 ccrud_RS00770 e849021d9c60f95e498b48081c0a38c6 97 SUPERFAMILY SSF55174 4 65 7.46E-19 T 14-09-2016 ccrud_RS00770 e849021d9c60f95e498b48081c0a38c6 97 Pfam PF13275 S4 domain 6 65 4.4E-25 T 14-09-2016 ccrud_RS05250 877f9f81ab3e080e00f94a0ea594725d 313 Pfam PF05661 Protein of unknown function (DUF808) 4 300 1.5E-125 T 14-09-2016 IPR008526 Inner membrane protein YedI ccrud_RS05250 877f9f81ab3e080e00f94a0ea594725d 313 PANTHER PTHR30503 8 308 5.7E-69 T 14-09-2016 ccrud_RS05250 877f9f81ab3e080e00f94a0ea594725d 313 PIRSF PIRSF016660 1 313 3.0E-113 T 14-09-2016 IPR008526 Inner membrane protein YedI ccrud_RS03390 6f5e5ecbf8b33789f5eb5a07718051f5 289 PANTHER PTHR21666 160 286 2.9E-23 T 14-09-2016 ccrud_RS03390 6f5e5ecbf8b33789f5eb5a07718051f5 289 Gene3D G3DSA:3.90.1720.10 172 287 7.0E-35 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS03390 6f5e5ecbf8b33789f5eb5a07718051f5 289 SUPERFAMILY SSF54001 172 287 7.85E-33 T 14-09-2016 ccrud_RS03390 6f5e5ecbf8b33789f5eb5a07718051f5 289 Pfam PF00877 NlpC/P60 family 191 282 1.3E-22 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 SUPERFAMILY SSF55486 2 642 1.26E-173 T 14-09-2016 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 423 435 2.1E-20 T 14-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 522 533 2.1E-20 T 14-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 444 460 2.1E-20 T 14-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 PRINTS PR00786 Neprilysin metalloprotease (M13) family signature 405 417 2.1E-20 T 14-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 Gene3D G3DSA:3.40.390.10 245 365 1.4E-98 T 14-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 Gene3D G3DSA:3.40.390.10 404 642 1.4E-98 T 14-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 Pfam PF01431 Peptidase family M13 413 638 2.1E-62 T 14-09-2016 IPR018497 Peptidase M13, C-terminal domain GO:0004222|GO:0006508 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 PANTHER PTHR11733 3 642 1.4E-150 T 14-09-2016 IPR000718 Peptidase M13 GO:0004222|GO:0006508 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 Pfam PF05649 Peptidase family M13 2 362 6.0E-85 T 14-09-2016 IPR008753 Peptidase M13, N-terminal domain GO:0006508 ccrud_RS00805 b0a531fd1d9a845afe4c47a8931ecd25 642 PANTHER PTHR11733:SF65 3 642 1.4E-150 T 14-09-2016 ccrud_RS06030 4dbd4e71b13bb07fc854ccb1269e706c 324 Pfam PF02653 Branched-chain amino acid transport system / permease component 49 312 2.7E-47 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 ccrud_RS06030 4dbd4e71b13bb07fc854ccb1269e706c 324 PANTHER PTHR32196:SF21 19 321 5.0E-110 T 14-09-2016 ccrud_RS06030 4dbd4e71b13bb07fc854ccb1269e706c 324 PANTHER PTHR32196 19 321 5.0E-110 T 14-09-2016 ccrud_RS03580 2c5dcd1ade82765a3e7e9331690824a7 424 SUPERFAMILY SSF53850 52 420 1.65E-71 T 14-09-2016 ccrud_RS03580 2c5dcd1ade82765a3e7e9331690824a7 424 PANTHER PTHR30061 12 422 2.3E-49 T 14-09-2016 ccrud_RS03580 2c5dcd1ade82765a3e7e9331690824a7 424 Pfam PF13416 Bacterial extracellular solute-binding protein 64 361 3.7E-26 T 14-09-2016 ccrud_RS03580 2c5dcd1ade82765a3e7e9331690824a7 424 Gene3D G3DSA:3.40.190.10 63 176 3.7E-20 T 14-09-2016 ccrud_RS03580 2c5dcd1ade82765a3e7e9331690824a7 424 Gene3D G3DSA:3.40.190.10 177 358 2.8E-36 T 14-09-2016 ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 Gene3D G3DSA:2.40.50.140 1 65 2.4E-30 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 PANTHER PTHR11544 1 67 1.3E-33 T 14-09-2016 ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 14-09-2016 IPR019844 Cold-shock conserved site ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 PRINTS PR00050 Cold shock protein signature 25 34 1.5E-16 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 PRINTS PR00050 Cold shock protein signature 40 58 1.5E-16 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 PRINTS PR00050 Cold shock protein signature 4 19 1.5E-16 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 SMART SM00357 3 67 5.6E-29 T 14-09-2016 IPR011129 Cold shock protein GO:0003676 ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 PIRSF PIRSF002599 1 67 5.9E-24 T 14-09-2016 IPR012156 Cold shock, CspA GO:0003676 ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 SUPERFAMILY SSF50249 1 66 3.43E-24 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS05045 5766c42639b0d6a988299e8ba0a2cc88 67 Pfam PF00313 'Cold-shock' DNA-binding domain 3 66 1.2E-30 T 14-09-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 ccrud_RS07620 8f918959cfac47a3ff04094ca4f905c1 360 PANTHER PTHR10683 1 359 1.2E-168 T 14-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 ccrud_RS07620 8f918959cfac47a3ff04094ca4f905c1 360 Pfam PF00923 Transaldolase 15 354 8.6E-81 T 14-09-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 ccrud_RS07620 8f918959cfac47a3ff04094ca4f905c1 360 ProSitePatterns PS01054 Transaldolase signature 1. 40 48 - T 14-09-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 ccrud_RS07620 8f918959cfac47a3ff04094ca4f905c1 360 TIGRFAM TIGR00876 tal_mycobact: transaldolase 11 354 1.5E-132 T 14-09-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 ccrud_RS07620 8f918959cfac47a3ff04094ca4f905c1 360 PIRSF PIRSF036915 1 360 9.3E-167 T 14-09-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 ccrud_RS07620 8f918959cfac47a3ff04094ca4f905c1 360 Gene3D G3DSA:3.20.20.70 1 355 4.1E-117 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS07620 8f918959cfac47a3ff04094ca4f905c1 360 Hamap MF_00493 Transaldolase [tal]. 1 360 149.727 T 14-09-2016 IPR004732 Transaldolase type 2 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 ccrud_RS07620 8f918959cfac47a3ff04094ca4f905c1 360 SUPERFAMILY SSF51569 2 358 2.81E-75 T 14-09-2016 ccrud_RS07620 8f918959cfac47a3ff04094ca4f905c1 360 PANTHER PTHR10683:SF12 1 359 1.2E-168 T 14-09-2016 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 277 290 - T 14-09-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 37 603 4.7E-261 T 14-09-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 PANTHER PTHR10277 408 612 1.1E-256 T 14-09-2016 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 PANTHER PTHR10277 26 380 1.1E-256 T 14-09-2016 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 Pfam PF08502 LeuA allosteric (dimerisation) domain 473 604 8.0E-32 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 SUPERFAMILY SSF89000 439 489 2.79E-15 T 14-09-2016 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 Gene3D G3DSA:3.20.20.70 48 445 3.3E-147 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 SMART SM00917 473 604 4.3E-30 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 74 90 - T 14-09-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 PANTHER PTHR10277:SF28 408 612 1.1E-256 T 14-09-2016 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 PANTHER PTHR10277:SF28 26 380 1.1E-256 T 14-09-2016 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 SUPERFAMILY SSF110921 497 603 1.44E-33 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 Pfam PF00682 HMGL-like 67 347 1.4E-89 T 14-09-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 38 605 54.524 T 14-09-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 ccrud_RS01325 2a2828294b7de34a4adfdfe94f471233 616 SUPERFAMILY SSF51569 56 364 5.13E-96 T 14-09-2016 ccrud_RS01835 b8625865d296ae00f42841f24a098e64 304 Pfam PF02012 BNR/Asp-box repeat 294 304 0.043 T 14-09-2016 IPR002860 BNR repeat ccrud_RS01835 b8625865d296ae00f42841f24a098e64 304 Gene3D G3DSA:2.130.10.10 91 230 4.5E-15 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 ccrud_RS01835 b8625865d296ae00f42841f24a098e64 304 Gene3D G3DSA:2.130.10.10 264 304 4.5E-15 T 14-09-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 ccrud_RS01835 b8625865d296ae00f42841f24a098e64 304 SUPERFAMILY SSF110296 90 304 9.55E-22 T 14-09-2016 ccrud_RS06115 c62988a3b5cac5f8a9606028b9cddc84 172 Gene3D G3DSA:3.30.70.1150 90 167 5.7E-29 T 14-09-2016 ccrud_RS06115 c62988a3b5cac5f8a9606028b9cddc84 172 SUPERFAMILY SSF55021 85 167 2.18E-25 T 14-09-2016 ccrud_RS06115 c62988a3b5cac5f8a9606028b9cddc84 172 Pfam PF10369 Small subunit of acetolactate synthase 90 163 1.4E-26 T 14-09-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06115 c62988a3b5cac5f8a9606028b9cddc84 172 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 8 164 1.4E-55 T 14-09-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 ccrud_RS06115 c62988a3b5cac5f8a9606028b9cddc84 172 PANTHER PTHR30239 1 167 8.1E-67 T 14-09-2016 ccrud_RS06115 c62988a3b5cac5f8a9606028b9cddc84 172 Gene3D G3DSA:3.30.70.260 7 84 2.8E-25 T 14-09-2016 ccrud_RS06115 c62988a3b5cac5f8a9606028b9cddc84 172 Pfam PF13710 ACT domain 19 79 1.5E-12 T 14-09-2016 ccrud_RS06115 c62988a3b5cac5f8a9606028b9cddc84 172 SUPERFAMILY SSF55021 7 82 2.06E-17 T 14-09-2016 ccrud_RS06115 c62988a3b5cac5f8a9606028b9cddc84 172 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 8 82 9.0E-36 T 14-09-2016 ccrud_RS05960 213eb64affa9a02e8e1ac48d1ed0d213 365 Gene3D G3DSA:2.30.30.280 214 276 3.4E-15 T 14-09-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 ccrud_RS05960 213eb64affa9a02e8e1ac48d1ed0d213 365 Gene3D G3DSA:2.40.30.10 281 364 4.1E-16 T 14-09-2016 ccrud_RS05960 213eb64affa9a02e8e1ac48d1ed0d213 365 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 360 4.7E-93 T 14-09-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 ccrud_RS05960 213eb64affa9a02e8e1ac48d1ed0d213 365 SUPERFAMILY SSF52402 1 244 1.01E-45 T 14-09-2016 ccrud_RS05960 213eb64affa9a02e8e1ac48d1ed0d213 365 Pfam PF03054 tRNA methyl transferase 1 360 1.8E-114 T 14-09-2016 ccrud_RS05960 213eb64affa9a02e8e1ac48d1ed0d213 365 PANTHER PTHR11933 1 360 1.2E-141 T 14-09-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 ccrud_RS05960 213eb64affa9a02e8e1ac48d1ed0d213 365 Gene3D G3DSA:3.40.50.620 1 211 2.2E-73 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS05960 213eb64affa9a02e8e1ac48d1ed0d213 365 PANTHER PTHR11933:SF10 1 360 1.2E-141 T 14-09-2016 ccrud_RS05960 213eb64affa9a02e8e1ac48d1ed0d213 365 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 1 361 35.763 T 14-09-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 ccrud_RS04960 891f9550e750b624a5e00bdf3f81856d 256 Pfam PF00392 Bacterial regulatory proteins, gntR family 46 102 3.2E-11 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04960 891f9550e750b624a5e00bdf3f81856d 256 SMART SM00345 48 106 5.4E-5 T 14-09-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 ccrud_RS04960 891f9550e750b624a5e00bdf3f81856d 256 SMART SM00895 116 240 8.7E-5 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS04960 891f9550e750b624a5e00bdf3f81856d 256 Pfam PF07729 FCD domain 116 234 3.2E-16 T 14-09-2016 IPR011711 GntR, C-terminal ccrud_RS04960 891f9550e750b624a5e00bdf3f81856d 256 SUPERFAMILY SSF46785 41 124 4.25E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04960 891f9550e750b624a5e00bdf3f81856d 256 Gene3D G3DSA:1.10.10.10 39 107 1.6E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04960 891f9550e750b624a5e00bdf3f81856d 256 SUPERFAMILY SSF48008 114 242 2.3E-14 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS04960 891f9550e750b624a5e00bdf3f81856d 256 Gene3D G3DSA:1.20.120.530 114 246 4.4E-14 T 14-09-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal ccrud_RS13460 e50379fcd2d8e86e09fbab8052a870f4 289 Pfam PF04012 PspA/IM30 family 4 239 3.3E-30 T 14-09-2016 IPR007157 PspA/IM30 ccrud_RS09560 5f9baaf5a35f95751ad736deeda7a93a 168 Hamap MF_00977 3'-5' exoribonuclease. 1 159 43.587 T 14-09-2016 IPR030853 3-5 exoribonuclease, actinobacteria GO:0000287|GO:0008408 ccrud_RS09560 5f9baaf5a35f95751ad736deeda7a93a 168 Pfam PF16473 3' exoribonuclease, RNase T-like 2 156 2.5E-19 T 14-09-2016 IPR033390 3'-5' exoribonuclease Rv2179c-like domain ccrud_RS11840 615e48c8968649dffaeeaf91b022b2cd 484 PANTHER PTHR31082:SF6 40 445 9.4E-48 T 14-09-2016 ccrud_RS11840 615e48c8968649dffaeeaf91b022b2cd 484 Pfam PF06738 Putative threonine/serine exporter 43 288 1.8E-60 T 14-09-2016 IPR010619 Putative threonine/serine exporter ccrud_RS11840 615e48c8968649dffaeeaf91b022b2cd 484 Pfam PF12821 Threonine/Serine exporter, ThrE 316 438 5.7E-16 T 14-09-2016 IPR024528 Threonine/Serine exporter, ThrE ccrud_RS11840 615e48c8968649dffaeeaf91b022b2cd 484 PANTHER PTHR31082 40 445 9.4E-48 T 14-09-2016 ccrud_RS12570 cb470c8b8073ec076f1887ec21be6205 385 SUPERFAMILY SSF52343 243 380 7.86E-19 T 14-09-2016 ccrud_RS12570 cb470c8b8073ec076f1887ec21be6205 385 Gene3D G3DSA:2.40.30.10 145 237 1.3E-8 T 14-09-2016 ccrud_RS12570 cb470c8b8073ec076f1887ec21be6205 385 PANTHER PTHR19370:SF118 141 383 2.7E-37 T 14-09-2016 ccrud_RS12570 cb470c8b8073ec076f1887ec21be6205 385 SUPERFAMILY SSF63380 145 237 3.4E-9 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS12570 cb470c8b8073ec076f1887ec21be6205 385 PANTHER PTHR19370:SF118 6 26 2.7E-37 T 14-09-2016 ccrud_RS12570 cb470c8b8073ec076f1887ec21be6205 385 PANTHER PTHR19370 141 383 2.7E-37 T 14-09-2016 ccrud_RS12570 cb470c8b8073ec076f1887ec21be6205 385 PANTHER PTHR19370 6 26 2.7E-37 T 14-09-2016 ccrud_RS12570 cb470c8b8073ec076f1887ec21be6205 385 Gene3D G3DSA:3.40.50.80 243 382 5.2E-19 T 14-09-2016 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PANTHER PTHR30620 351 503 4.0E-75 T 14-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 138 443 7.0E-40 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PANTHER PTHR30620 128 330 4.0E-75 T 14-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PANTHER PTHR30620 6 69 4.0E-75 T 14-09-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 SUPERFAMILY SSF52279 482 678 6.02E-12 T 14-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 Gene3D G3DSA:3.20.20.300 33 67 5.1E-96 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 Gene3D G3DSA:3.20.20.300 114 463 5.1E-96 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PANTHER PTHR30620:SF5 6 69 4.0E-75 T 14-09-2016 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PRINTS PR00133 Glycosyl hydrolase family 3 signature 234 250 1.9E-7 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PRINTS PR00133 Glycosyl hydrolase family 3 signature 188 207 1.9E-7 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PRINTS PR00133 Glycosyl hydrolase family 3 signature 366 384 1.9E-7 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PRINTS PR00133 Glycosyl hydrolase family 3 signature 155 171 1.9E-7 T 14-09-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 482 677 1.8E-6 T 14-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PANTHER PTHR30620:SF5 128 330 4.0E-75 T 14-09-2016 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 Gene3D G3DSA:3.40.50.1700 531 677 1.8E-7 T 14-09-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 PANTHER PTHR30620:SF5 351 503 4.0E-75 T 14-09-2016 ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 SUPERFAMILY SSF51445 32 69 1.26E-76 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS01650 7385078b80a0a7689b7a83890fd0113d 678 SUPERFAMILY SSF51445 111 480 1.26E-76 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS04965 fd34f1f9df1d3e60f4437df8108e2216 213 SUPERFAMILY SSF89796 2 203 7.85E-49 T 14-09-2016 IPR023606 CoA-transferase family III domain ccrud_RS04965 fd34f1f9df1d3e60f4437df8108e2216 213 Gene3D G3DSA:3.30.1540.10 28 111 1.0E-25 T 14-09-2016 ccrud_RS04965 fd34f1f9df1d3e60f4437df8108e2216 213 Pfam PF02515 CoA-transferase family III 2 179 7.6E-39 T 14-09-2016 IPR003673 CoA-transferase family III GO:0003824 ccrud_RS04965 fd34f1f9df1d3e60f4437df8108e2216 213 Gene3D G3DSA:3.40.50.10540 2 22 1.4E-28 T 14-09-2016 IPR023606 CoA-transferase family III domain ccrud_RS04965 fd34f1f9df1d3e60f4437df8108e2216 213 Gene3D G3DSA:3.40.50.10540 112 204 1.4E-28 T 14-09-2016 IPR023606 CoA-transferase family III domain ccrud_RS08525 a9514b532d29cf3ce0f034c79d9eb2fc 515 PANTHER PTHR35342:SF3 2 508 4.7E-218 T 14-09-2016 ccrud_RS08525 a9514b532d29cf3ce0f034c79d9eb2fc 515 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 442 5.5E-131 T 14-09-2016 IPR002823 Protein of unknown function DUF112, transmembrane ccrud_RS08525 a9514b532d29cf3ce0f034c79d9eb2fc 515 PANTHER PTHR35342 2 508 4.7E-218 T 14-09-2016 ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 Gene3D G3DSA:1.20.1640.10 156 331 2.9E-13 T 14-09-2016 ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 Pfam PF07549 SecD/SecF GG Motif 52 72 5.2E-5 T 14-09-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 Pfam PF02355 Protein export membrane protein 141 325 2.9E-52 T 14-09-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 PRINTS PR01755 Bacterial translocase SecF protein signature 259 274 5.1E-20 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 PRINTS PR01755 Bacterial translocase SecF protein signature 176 190 5.1E-20 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 PRINTS PR01755 Bacterial translocase SecF protein signature 224 242 5.1E-20 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 PRINTS PR01755 Bacterial translocase SecF protein signature 56 71 5.1E-20 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 PANTHER PTHR30081 21 356 8.9E-50 T 14-09-2016 ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 57 316 1.5E-59 T 14-09-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 SUPERFAMILY SSF82866 148 327 8.89E-25 T 14-09-2016 ccrud_RS08010 86d33b77ff2dd4dc4c5032dadef3fe2e 398 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 29 327 21.794 T 14-09-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 ccrud_RS13950 eb902d9a9a553004ce3749af9d42fe66 133 Gene3D G3DSA:3.30.230.10 2 130 6.0E-26 T 14-09-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup ccrud_RS13950 eb902d9a9a553004ce3749af9d42fe66 133 PANTHER PTHR33992 1 130 1.1E-15 T 14-09-2016 ccrud_RS13950 eb902d9a9a553004ce3749af9d42fe66 133 TIGRFAM TIGR00188 rnpA: ribonuclease P protein component 5 118 1.8E-13 T 14-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 ccrud_RS13950 eb902d9a9a553004ce3749af9d42fe66 133 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 13 119 4.0E-5 T 14-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 ccrud_RS13950 eb902d9a9a553004ce3749af9d42fe66 133 SUPERFAMILY SSF54211 2 128 2.3E-19 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS13950 eb902d9a9a553004ce3749af9d42fe66 133 Hamap MF_00227 Ribonuclease P protein component [rnpA]. 2 129 14.344 T 14-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 ccrud_RS13950 eb902d9a9a553004ce3749af9d42fe66 133 Pfam PF00825 Ribonuclease P 2 126 2.3E-24 T 14-09-2016 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 ccrud_RS11800 ffe425288c9855093205ed94c4fab965 437 PANTHER PTHR23508 18 429 2.6E-152 T 14-09-2016 ccrud_RS11800 ffe425288c9855093205ed94c4fab965 437 Gene3D G3DSA:1.20.1250.20 21 224 3.3E-22 T 14-09-2016 ccrud_RS11800 ffe425288c9855093205ed94c4fab965 437 Gene3D G3DSA:1.20.1250.20 254 429 9.9E-20 T 14-09-2016 ccrud_RS11800 ffe425288c9855093205ed94c4fab965 437 ProSitePatterns PS00217 Sugar transport proteins signature 2. 132 157 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS11800 ffe425288c9855093205ed94c4fab965 437 PANTHER PTHR23508:SF19 18 429 2.6E-152 T 14-09-2016 ccrud_RS11800 ffe425288c9855093205ed94c4fab965 437 SUPERFAMILY SSF103473 10 425 1.18E-63 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS11800 ffe425288c9855093205ed94c4fab965 437 Pfam PF00083 Sugar (and other) transporter 23 417 4.6E-28 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 PANTHER PTHR33254 254 446 5.9E-50 T 14-09-2016 ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 Gene3D G3DSA:1.10.1040.10 160 256 1.1E-15 T 14-09-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 SUPERFAMILY SSF48179 153 254 7.82E-11 T 14-09-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 PANTHER PTHR33254:SF5 254 446 5.9E-50 T 14-09-2016 ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 SUPERFAMILY SSF89562 266 427 8.63E-44 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 129 3.0E-8 T 14-09-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 Gene3D G3DSA:3.40.50.720 1 157 1.1E-21 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 SUPERFAMILY SSF51735 1 151 1.87E-21 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 Gene3D G3DSA:3.50.30.40 266 425 6.0E-52 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein ccrud_RS04720 98ee88ea163208148858573ab92c0a52 451 Pfam PF03737 Demethylmenaquinone methyltransferase 270 417 7.6E-45 T 14-09-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 PANTHER PTHR22976 11 328 1.5E-118 T 14-09-2016 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 TIGRFAM TIGR00433 bioB: biotin synthase 33 325 1.7E-105 T 14-09-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 Pfam PF04055 Radical SAM superfamily 67 222 1.1E-15 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 PANTHER PTHR22976:SF1 11 328 1.5E-118 T 14-09-2016 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 SUPERFAMILY SSF102114 22 317 7.06E-64 T 14-09-2016 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 Gene3D G3DSA:3.20.20.70 22 326 4.7E-76 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 SMART SM00729 60 264 2.0E-37 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 SMART SM00876 235 327 1.2E-26 T 14-09-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 PIRSF PIRSF001619 3 334 5.0E-110 T 14-09-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 235 324 8.3E-13 T 14-09-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 ccrud_RS00365 3f920b1128c2a560848130df70a5487d 334 Hamap MF_01694 Biotin synthase [bioB]. 20 328 37.778 T 14-09-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 ccrud_RS10415 c7ca00d0633d363c0ede82997ebb666e 87 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 4.6E-24 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10415 c7ca00d0633d363c0ede82997ebb666e 87 Pfam PF01649 Ribosomal protein S20 2 83 6.0E-28 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10415 c7ca00d0633d363c0ede82997ebb666e 87 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 14 86 3.0E-32 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10415 c7ca00d0633d363c0ede82997ebb666e 87 PANTHER PTHR33398 1 86 4.2E-31 T 14-09-2016 ccrud_RS10415 c7ca00d0633d363c0ede82997ebb666e 87 SUPERFAMILY SSF46992 3 86 1.22E-27 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10415 c7ca00d0633d363c0ede82997ebb666e 87 Gene3D G3DSA:1.20.58.110 1 86 6.4E-30 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS10415 c7ca00d0633d363c0ede82997ebb666e 87 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 16.755 T 14-09-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS01680 74efcf547fade89ece3dec5e6bc990ae 121 Pfam PF10066 Uncharacterized conserved protein (DUF2304) 9 113 5.1E-29 T 14-09-2016 IPR019277 Protein of unknown function DUF2304 ccrud_RS00320 b6fbc6fa59e44ccf5a073b686a015a8d 432 SUPERFAMILY SSF81340 9 409 2.49E-63 T 14-09-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 ccrud_RS00320 b6fbc6fa59e44ccf5a073b686a015a8d 432 Pfam PF00654 Voltage gated chloride channel 75 405 7.1E-53 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 ccrud_RS00320 b6fbc6fa59e44ccf5a073b686a015a8d 432 PANTHER PTHR11689 134 368 2.7E-12 T 14-09-2016 ccrud_RS00320 b6fbc6fa59e44ccf5a073b686a015a8d 432 PRINTS PR00762 Chloride channel signature 163 182 6.3E-10 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 ccrud_RS00320 b6fbc6fa59e44ccf5a073b686a015a8d 432 PRINTS PR00762 Chloride channel signature 112 131 6.3E-10 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 ccrud_RS00320 b6fbc6fa59e44ccf5a073b686a015a8d 432 PRINTS PR00762 Chloride channel signature 356 372 6.3E-10 T 14-09-2016 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 ccrud_RS00320 b6fbc6fa59e44ccf5a073b686a015a8d 432 Gene3D G3DSA:1.10.3080.10 17 407 1.3E-44 T 14-09-2016 IPR014743 Chloride channel, core GO:0005216|GO:0055085 ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 Gene3D G3DSA:3.10.450.50 14 115 7.5E-4 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 SUPERFAMILY SSF54427 27 116 4.65E-6 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 PANTHER PTHR23023 166 510 2.8E-115 T 14-09-2016 ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 PANTHER PTHR23023 530 588 2.8E-115 T 14-09-2016 ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 PANTHER PTHR23023:SF100 166 510 2.8E-115 T 14-09-2016 ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 PANTHER PTHR23023:SF100 530 588 2.8E-115 T 14-09-2016 ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 SUPERFAMILY SSF51905 447 586 2.59E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 SUPERFAMILY SSF51905 171 366 2.59E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 Pfam PF00743 Flavin-binding monooxygenase-like 228 367 9.9E-14 T 14-09-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 ccrud_RS13145 eda730fd861a0bd59faccb1a49f5c59c 596 Gene3D G3DSA:3.50.50.60 166 378 1.5E-44 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS06820 e7aaf9b57932247d2f06694676c8f890 269 PANTHER PTHR33969 2 261 2.4E-67 T 14-09-2016 ccrud_RS06820 e7aaf9b57932247d2f06694676c8f890 269 PANTHER PTHR33969:SF2 2 261 2.4E-67 T 14-09-2016 ccrud_RS06820 e7aaf9b57932247d2f06694676c8f890 269 Pfam PF02616 Segregation and condensation protein ScpA 30 253 4.4E-58 T 14-09-2016 IPR003768 Segregation and condensation protein A ccrud_RS00140 6d4ce1f7a0d55b088ec43cd9a09ca249 218 Gene3D G3DSA:1.20.1540.10 11 186 3.1E-31 T 14-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 ccrud_RS00140 6d4ce1f7a0d55b088ec43cd9a09ca249 218 PANTHER PTHR22936 2 215 1.6E-21 T 14-09-2016 IPR002610 Peptidase S54, rhomboid GO:0004252|GO:0006508|GO:0016021 ccrud_RS00140 6d4ce1f7a0d55b088ec43cd9a09ca249 218 Pfam PF01694 Rhomboid family 62 190 6.2E-29 T 14-09-2016 IPR022764 Peptidase S54, rhomboid domain GO:0004252|GO:0016021 ccrud_RS00140 6d4ce1f7a0d55b088ec43cd9a09ca249 218 SUPERFAMILY SSF144091 6 190 1.16E-33 T 14-09-2016 ccrud_RS03990 175748ed271ca22fdf545975aad2b208 251 PANTHER PTHR24220:SF471 3 247 6.1E-133 T 14-09-2016 ccrud_RS03990 175748ed271ca22fdf545975aad2b208 251 SMART SM00382 26 213 6.2E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS03990 175748ed271ca22fdf545975aad2b208 251 PANTHER PTHR24220 3 247 6.1E-133 T 14-09-2016 ccrud_RS03990 175748ed271ca22fdf545975aad2b208 251 Pfam PF00005 ABC transporter 19 164 2.4E-27 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS03990 175748ed271ca22fdf545975aad2b208 251 Gene3D G3DSA:3.40.50.300 2 228 6.6E-60 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03990 175748ed271ca22fdf545975aad2b208 251 SUPERFAMILY SSF52540 2 226 3.3E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02570 375165d8c94f30f0110724ee96a54c65 229 PANTHER PTHR40763 14 228 1.7E-33 T 14-09-2016 ccrud_RS02570 375165d8c94f30f0110724ee96a54c65 229 PANTHER PTHR40763:SF1 14 228 1.7E-33 T 14-09-2016 ccrud_RS02570 375165d8c94f30f0110724ee96a54c65 229 Pfam PF08044 Domain of unknown function (DUF1707) 14 62 1.3E-13 T 14-09-2016 IPR012551 Protein of unknown function DUF1707 ccrud_RS02570 375165d8c94f30f0110724ee96a54c65 229 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 136 223 2.6E-7 T 14-09-2016 IPR024425 Cell wall-active antibiotics response 4TMS YvqF ccrud_RS06060 9b41e77d12d540d125d7e9a85db29b9e 192 SUPERFAMILY SSF51735 5 189 4.55E-27 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06060 9b41e77d12d540d125d7e9a85db29b9e 192 PANTHER PTHR14239 33 170 4.3E-23 T 14-09-2016 ccrud_RS06060 9b41e77d12d540d125d7e9a85db29b9e 192 Gene3D G3DSA:3.40.50.720 1 170 1.7E-47 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06060 9b41e77d12d540d125d7e9a85db29b9e 192 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 34 76 3.6E-6 T 14-09-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal ccrud_RS01620 fcb4512e55c30d727c7771411a4d4d46 197 Gene3D G3DSA:1.10.357.10 3 185 5.6E-23 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS01620 fcb4512e55c30d727c7771411a4d4d46 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.2E-9 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS01620 fcb4512e55c30d727c7771411a4d4d46 197 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.2E-9 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS01620 fcb4512e55c30d727c7771411a4d4d46 197 SUPERFAMILY SSF46689 3 74 4.94E-17 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS01620 fcb4512e55c30d727c7771411a4d4d46 197 PANTHER PTHR30055 1 184 4.0E-15 T 14-09-2016 ccrud_RS01620 fcb4512e55c30d727c7771411a4d4d46 197 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 58 8.8E-15 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS11910 5a9142ca78ea7b33949e465b276d5585 313 SMART SM00967 70 146 2.1E-16 T 14-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 ccrud_RS11910 5a9142ca78ea7b33949e465b276d5585 313 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 69 309 1.7E-59 T 14-09-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 ccrud_RS11910 5a9142ca78ea7b33949e465b276d5585 313 SUPERFAMILY SSF75217 134 312 2.68E-43 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases ccrud_RS11910 5a9142ca78ea7b33949e465b276d5585 313 Gene3D G3DSA:3.40.1280.10 158 311 2.6E-48 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ccrud_RS11910 5a9142ca78ea7b33949e465b276d5585 313 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 70 146 4.5E-17 T 14-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 ccrud_RS11910 5a9142ca78ea7b33949e465b276d5585 313 SUPERFAMILY SSF55315 65 143 5.18E-15 T 14-09-2016 IPR029064 50S ribosomal protein L30e-like ccrud_RS11910 5a9142ca78ea7b33949e465b276d5585 313 Gene3D G3DSA:3.30.1330.30 63 141 5.4E-18 T 14-09-2016 IPR029064 50S ribosomal protein L30e-like ccrud_RS11910 5a9142ca78ea7b33949e465b276d5585 313 PANTHER PTHR12029 50 313 6.6E-67 T 14-09-2016 ccrud_RS11910 5a9142ca78ea7b33949e465b276d5585 313 Pfam PF00588 SpoU rRNA Methylase family 163 302 2.6E-34 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 233 8.9E-7 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 117 1.3E-18 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 Gene3D G3DSA:3.30.360.10 308 361 2.0E-39 T 14-09-2016 ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 Gene3D G3DSA:3.30.360.10 138 261 2.0E-39 T 14-09-2016 ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 PANTHER PTHR22604:SF53 300 371 3.0E-78 T 14-09-2016 ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 PANTHER PTHR22604 300 371 3.0E-78 T 14-09-2016 ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 SUPERFAMILY SSF55347 132 268 2.62E-28 T 14-09-2016 ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 SUPERFAMILY SSF51735 2 175 2.04E-37 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 Gene3D G3DSA:3.40.50.720 1 137 1.7E-34 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 PANTHER PTHR22604 1 283 3.0E-78 T 14-09-2016 ccrud_RS11475 8d9ceef3217e79ad2acb121e45831279 387 PANTHER PTHR22604:SF53 1 283 3.0E-78 T 14-09-2016 ccrud_RS00315 4db72b1cdd5e08087e37ab34348a5e1d 147 Gene3D G3DSA:3.30.429.20 64 122 3.0E-13 T 14-09-2016 ccrud_RS00315 4db72b1cdd5e08087e37ab34348a5e1d 147 Gene3D G3DSA:3.30.429.20 13 61 6.9E-10 T 14-09-2016 ccrud_RS00315 4db72b1cdd5e08087e37ab34348a5e1d 147 SUPERFAMILY SSF55331 1 119 1.76E-23 T 14-09-2016 IPR014347 Tautomerase/MIF superfamily ccrud_RS00315 4db72b1cdd5e08087e37ab34348a5e1d 147 Pfam PF14832 Putative oxalocrotonate tautomerase enzyme 1 86 1.7E-11 T 14-09-2016 IPR028116 Putative oxalocrotonate tautomerase ccrud_RS10970 9e60781a417e6354aa3cc9e80d7acf2c 133 PANTHER PTHR10681 7 126 1.5E-22 T 14-09-2016 ccrud_RS10970 9e60781a417e6354aa3cc9e80d7acf2c 133 Pfam PF01152 Bacterial-like globin 6 119 3.6E-34 T 14-09-2016 IPR001486 Truncated hemoglobin GO:0019825 ccrud_RS10970 9e60781a417e6354aa3cc9e80d7acf2c 133 ProSitePatterns PS01213 Protozoan/cyanobacterial globins signature. 53 77 - T 14-09-2016 IPR019795 Globin, bacterial-like, conserved site GO:0015671|GO:0019825 ccrud_RS10970 9e60781a417e6354aa3cc9e80d7acf2c 133 Gene3D G3DSA:1.10.490.10 4 125 1.6E-41 T 14-09-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 ccrud_RS10970 9e60781a417e6354aa3cc9e80d7acf2c 133 SUPERFAMILY SSF46458 7 124 1.81E-35 T 14-09-2016 IPR009050 Globin-like ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 281 301 1.4E-7 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 303 321 1.4E-7 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 330 345 1.4E-7 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 Pfam PF01926 50S ribosome-binding GTPase 280 398 2.7E-21 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 Pfam PF01926 50S ribosome-binding GTPase 108 222 6.3E-23 T 14-09-2016 IPR006073 GTP binding domain GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 278 436 1.1E-19 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 107 231 1.6E-19 T 14-09-2016 IPR005225 Small GTP-binding protein domain GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 SUPERFAMILY SSF52540 107 270 2.86E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 Gene3D G3DSA:3.30.300.20 460 534 2.2E-27 T 14-09-2016 IPR015946 K homology domain-like, alpha/beta ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 SUPERFAMILY SSF52540 240 535 1.27E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 Hamap MF_00195 GTPase Der [der]. 105 535 34.571 T 14-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 454 532 7.9E-26 T 14-09-2016 IPR032859 GTPase Der, C-terminal KH-domain-like ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 PANTHER PTHR11649 65 539 4.4E-128 T 14-09-2016 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 PANTHER PTHR11649:SF5 65 539 4.4E-128 T 14-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 PIRSF PIRSF006485 104 540 1.5E-181 T 14-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 107 532 1.9E-152 T 14-09-2016 IPR016484 GTP-binding protein EngA GO:0005525 ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 Gene3D G3DSA:3.40.50.300 105 270 3.9E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06850 9319aad2fb5dba359e0ce85e771890b1 543 Gene3D G3DSA:3.40.50.300 278 459 4.7E-47 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05875 5d4b881e6858b8b620e68b017482202e 101 Pfam PF01910 Thiamine-binding protein 3 95 5.0E-28 T 14-09-2016 IPR002767 Thiamine-binding protein ccrud_RS05875 5d4b881e6858b8b620e68b017482202e 101 SUPERFAMILY SSF89957 2 101 2.88E-29 T 14-09-2016 IPR029756 MTH1187/YkoF-like ccrud_RS05875 5d4b881e6858b8b620e68b017482202e 101 Gene3D G3DSA:3.30.70.930 1 99 9.5E-34 T 14-09-2016 IPR029756 MTH1187/YkoF-like ccrud_RS05875 5d4b881e6858b8b620e68b017482202e 101 PANTHER PTHR33777 1 101 6.0E-24 T 14-09-2016 ccrud_RS05875 5d4b881e6858b8b620e68b017482202e 101 PANTHER PTHR33777:SF1 1 101 6.0E-24 T 14-09-2016 ccrud_RS10065 627867b1f5190b296a5bd0593bc3d4e8 531 Pfam PF02720 Domain of unknown function (DUF222) 174 400 9.3E-12 T 14-09-2016 IPR003870 Domain of unknown function DUF222 ccrud_RS01280 8499592a4263f4eb467047797ae300f7 103 PANTHER PTHR33449:SF1 3 100 2.4E-32 T 14-09-2016 ccrud_RS01280 8499592a4263f4eb467047797ae300f7 103 Gene3D G3DSA:3.30.1310.10 2 101 1.0E-35 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family ccrud_RS01280 8499592a4263f4eb467047797ae300f7 103 PANTHER PTHR33449 3 100 2.4E-32 T 14-09-2016 ccrud_RS01280 8499592a4263f4eb467047797ae300f7 103 Pfam PF02575 YbaB/EbfC DNA-binding family 11 99 1.8E-30 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family ccrud_RS01280 8499592a4263f4eb467047797ae300f7 103 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 5 92 1.8E-23 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family ccrud_RS01280 8499592a4263f4eb467047797ae300f7 103 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 4 98 20.877 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family ccrud_RS01280 8499592a4263f4eb467047797ae300f7 103 PIRSF PIRSF004555 2 103 4.6E-35 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family ccrud_RS01280 8499592a4263f4eb467047797ae300f7 103 SUPERFAMILY SSF82607 11 100 3.92E-28 T 14-09-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 Pfam PF00709 Adenylosuccinate synthetase 4 421 2.0E-168 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 429 194.474 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 SUPERFAMILY SSF52540 1 427 7.97E-167 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 SMART SM00788 3 422 1.9E-271 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 5 427 3.1E-157 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 Gene3D G3DSA:3.40.440.10 1 93 8.4E-66 T 14-09-2016 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 Gene3D G3DSA:3.40.440.10 195 263 8.4E-66 T 14-09-2016 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 131 142 - T 14-09-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 10 17 - T 14-09-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 Gene3D G3DSA:1.10.300.10 101 194 8.0E-35 T 14-09-2016 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 Gene3D G3DSA:3.90.170.10 265 423 4.7E-65 T 14-09-2016 ccrud_RS12475 8fe831664be1b48f229dfeaaed4331b9 429 PANTHER PTHR11846 4 426 3.9E-226 T 14-09-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 PRINTS PR00149 Fumarate lyase superfamily signature 256 272 4.8E-14 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 PRINTS PR00149 Fumarate lyase superfamily signature 214 241 4.8E-14 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 PRINTS PR00149 Fumarate lyase superfamily signature 87 105 4.8E-14 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 PRINTS PR00149 Fumarate lyase superfamily signature 132 150 4.8E-14 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 Gene3D G3DSA:1.10.275.10 13 82 4.3E-9 T 14-09-2016 IPR024083 Fumarase/histidase, N-terminal ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 PANTHER PTHR11444:SF21 20 336 2.3E-70 T 14-09-2016 ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 Pfam PF00206 Lyase 85 281 3.0E-28 T 14-09-2016 IPR022761 Fumarate lyase, N-terminal ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 Gene3D G3DSA:1.20.200.10 88 341 3.0E-68 T 14-09-2016 ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 SUPERFAMILY SSF48557 5 351 5.03E-65 T 14-09-2016 IPR008948 L-Aspartase-like GO:0003824 ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 ProSitePatterns PS00163 Fumarate lyases signature. 256 265 - T 14-09-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase 5 329 8.0E-110 T 14-09-2016 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase GO:0019619|GO:0047472 KEGG: 00362+5.5.1.2 ccrud_RS10670 50159b953b27f9af085a6d26588c2f80 363 PANTHER PTHR11444 20 336 2.3E-70 T 14-09-2016 IPR000362 Fumarate lyase family ccrud_RS04770 299383862494304cfcd39978efadf3b7 836 Pfam PF16995 Transmembrane region of lysyl-tRNA synthetase 308 420 1.1E-7 T 14-09-2016 IPR031553 Lysyl-tRNA synthetase, N-terminal transmembrane region KEGG: 00970+6.1.1.6 ccrud_RS04770 299383862494304cfcd39978efadf3b7 836 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 495 798 1.1E-83 T 14-09-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal ccrud_RS04770 299383862494304cfcd39978efadf3b7 836 PANTHER PTHR34697 301 813 3.1E-31 T 14-09-2016 ccrud_RS12595 fc03fa491e64de7dbf8f6be8c1a9a360 146 PANTHER PTHR30204:SF8 16 126 5.8E-32 T 14-09-2016 ccrud_RS12595 fc03fa491e64de7dbf8f6be8c1a9a360 146 Gene3D G3DSA:1.10.1660.10 26 117 6.0E-22 T 14-09-2016 ccrud_RS12595 fc03fa491e64de7dbf8f6be8c1a9a360 146 SMART SM00422 24 93 6.7E-25 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS12595 fc03fa491e64de7dbf8f6be8c1a9a360 146 PANTHER PTHR30204 16 126 5.8E-32 T 14-09-2016 ccrud_RS12595 fc03fa491e64de7dbf8f6be8c1a9a360 146 SUPERFAMILY SSF46955 25 116 4.21E-19 T 14-09-2016 IPR009061 Putative DNA-binding domain ccrud_RS12595 fc03fa491e64de7dbf8f6be8c1a9a360 146 Pfam PF13411 MerR HTH family regulatory protein 26 91 2.1E-17 T 14-09-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 ccrud_RS01785 3a824c4620f5ed47c621b8dde1796148 510 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 438 2.8E-140 T 14-09-2016 IPR002823 Protein of unknown function DUF112, transmembrane ccrud_RS01785 3a824c4620f5ed47c621b8dde1796148 510 PANTHER PTHR35342 2 505 1.5E-195 T 14-09-2016 ccrud_RS01785 3a824c4620f5ed47c621b8dde1796148 510 PANTHER PTHR35342:SF2 2 505 1.5E-195 T 14-09-2016 ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 SUPERFAMILY SSF51430 38 296 2.62E-84 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 PIRSF PIRSF000097 35 302 8.2E-80 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 74 91 - T 14-09-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 Pfam PF00248 Aldo/keto reductase family 57 291 2.6E-44 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 Gene3D G3DSA:3.20.20.100 38 301 1.6E-97 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 PANTHER PTHR11732 37 296 7.2E-127 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 PRINTS PR00069 Aldo-keto reductase signature 124 142 3.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 PRINTS PR00069 Aldo-keto reductase signature 154 171 3.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 PRINTS PR00069 Aldo-keto reductase signature 188 217 3.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 PRINTS PR00069 Aldo-keto reductase signature 227 251 3.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS10495 e9466bfd1b904c2a4e04c014edcf94cb 305 PRINTS PR00069 Aldo-keto reductase signature 70 94 3.0E-40 T 14-09-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 ccrud_RS09910 1bd9deae8b0bec0f2934b0a2a6a824ac 297 Pfam PF02653 Branched-chain amino acid transport system / permease component 7 273 4.1E-29 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 ccrud_RS09910 1bd9deae8b0bec0f2934b0a2a6a824ac 297 PANTHER PTHR32196 1 297 2.1E-104 T 14-09-2016 ccrud_RS09910 1bd9deae8b0bec0f2934b0a2a6a824ac 297 PANTHER PTHR32196:SF27 1 297 2.1E-104 T 14-09-2016 ccrud_RS10955 68431804ecea1358f5867555735f1677 247 PANTHER PTHR30055 18 142 1.7E-15 T 14-09-2016 ccrud_RS10955 68431804ecea1358f5867555735f1677 247 Pfam PF00440 Bacterial regulatory proteins, tetR family 37 80 4.0E-6 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS10955 68431804ecea1358f5867555735f1677 247 SUPERFAMILY SSF46689 27 90 4.31E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS10955 68431804ecea1358f5867555735f1677 247 Gene3D G3DSA:1.10.357.10 22 246 4.7E-33 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS10955 68431804ecea1358f5867555735f1677 247 SUPERFAMILY SSF48498 99 244 1.89E-5 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS10955 68431804ecea1358f5867555735f1677 247 PANTHER PTHR30055:SF36 18 142 1.7E-15 T 14-09-2016 ccrud_RS00850 b38c2a35b353eba1f68277731c6d2183 318 PANTHER PTHR12110 23 308 4.6E-53 T 14-09-2016 ccrud_RS00850 b38c2a35b353eba1f68277731c6d2183 318 Gene3D G3DSA:3.20.20.150 19 306 4.7E-59 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS00850 b38c2a35b353eba1f68277731c6d2183 318 Pfam PF01261 Xylose isomerase-like TIM barrel 47 235 4.2E-24 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS00850 b38c2a35b353eba1f68277731c6d2183 318 SUPERFAMILY SSF51658 20 293 1.03E-46 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS00850 b38c2a35b353eba1f68277731c6d2183 318 PANTHER PTHR12110:SF3 23 308 4.6E-53 T 14-09-2016 ccrud_RS08850 a99692d80d5160507d38f5b83dc19552 122 SUPERFAMILY SSF52980 8 103 4.16E-15 T 14-09-2016 IPR011335 Restriction endonuclease type II-like ccrud_RS08850 a99692d80d5160507d38f5b83dc19552 122 Pfam PF02021 Uncharacterised protein family UPF0102 12 100 3.2E-22 T 14-09-2016 IPR003509 Uncharacterised protein family UPF0102 ccrud_RS08850 a99692d80d5160507d38f5b83dc19552 122 PANTHER PTHR34039 1 122 1.3E-29 T 14-09-2016 ccrud_RS08850 a99692d80d5160507d38f5b83dc19552 122 Hamap MF_00048 UPF0102 protein YraN [yraN]. 5 113 20.938 T 14-09-2016 IPR003509 Uncharacterised protein family UPF0102 ccrud_RS08850 a99692d80d5160507d38f5b83dc19552 122 PANTHER PTHR34039:SF1 1 122 1.3E-29 T 14-09-2016 ccrud_RS08850 a99692d80d5160507d38f5b83dc19552 122 Gene3D G3DSA:3.40.1350.10 11 117 7.6E-26 T 14-09-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 ccrud_RS03025 2d9dd699eb344b6344ae5d15b6f3d548 170 PANTHER PTHR23091 1 152 1.0E-25 T 14-09-2016 ccrud_RS03025 2d9dd699eb344b6344ae5d15b6f3d548 170 Gene3D G3DSA:3.40.630.30 3 151 3.9E-32 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS03025 2d9dd699eb344b6344ae5d15b6f3d548 170 PANTHER PTHR23091:SF247 1 152 1.0E-25 T 14-09-2016 ccrud_RS03025 2d9dd699eb344b6344ae5d15b6f3d548 170 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 14 149 7.2E-32 T 14-09-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 ccrud_RS03025 2d9dd699eb344b6344ae5d15b6f3d548 170 SUPERFAMILY SSF55729 1 151 7.93E-30 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS03025 2d9dd699eb344b6344ae5d15b6f3d548 170 Pfam PF00583 Acetyltransferase (GNAT) family 57 130 1.4E-16 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS13805 c4cc54c752ab53238c5838979c16d6d6 453 PANTHER PTHR23511 13 452 8.2E-61 T 14-09-2016 ccrud_RS13805 c4cc54c752ab53238c5838979c16d6d6 453 PANTHER PTHR23511:SF8 13 452 8.2E-61 T 14-09-2016 ccrud_RS13805 c4cc54c752ab53238c5838979c16d6d6 453 SUPERFAMILY SSF103473 18 443 5.49E-69 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13805 c4cc54c752ab53238c5838979c16d6d6 453 ProSitePatterns PS00217 Sugar transport proteins signature 2. 127 152 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS13805 c4cc54c752ab53238c5838979c16d6d6 453 Gene3D G3DSA:1.20.1250.20 27 208 1.2E-32 T 14-09-2016 ccrud_RS13805 c4cc54c752ab53238c5838979c16d6d6 453 Pfam PF07690 Major Facilitator Superfamily 36 364 7.9E-39 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS13805 c4cc54c752ab53238c5838979c16d6d6 453 Gene3D G3DSA:1.20.1250.20 266 443 2.6E-14 T 14-09-2016 ccrud_RS05420 21b536d41a2d69c2d5ff2c613e0de3f8 148 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 22 41 1.3E-8 T 14-09-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 ccrud_RS05420 21b536d41a2d69c2d5ff2c613e0de3f8 148 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 2 22 1.3E-8 T 14-09-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 ccrud_RS05420 21b536d41a2d69c2d5ff2c613e0de3f8 148 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 2 144 15.222 T 14-09-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 ccrud_RS05420 21b536d41a2d69c2d5ff2c613e0de3f8 148 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 5 83 1.8E-17 T 14-09-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 ccrud_RS01860 2730d79ecdc2342a80a3d05eb728f65b 201 Pfam PF02397 Bacterial sugar transferase 12 183 3.5E-56 T 14-09-2016 IPR003362 Bacterial sugar transferase ccrud_RS01860 2730d79ecdc2342a80a3d05eb728f65b 201 PANTHER PTHR30576 10 191 9.0E-84 T 14-09-2016 ccrud_RS01860 2730d79ecdc2342a80a3d05eb728f65b 201 PANTHER PTHR30576:SF8 10 191 9.0E-84 T 14-09-2016 ccrud_RS13240 aada9a01f573882450cc98029fcf5bff 288 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 68 209 1.4E-42 T 14-09-2016 IPR004474 Cell envelope-related transcriptional attenuator domain ccrud_RS13240 aada9a01f573882450cc98029fcf5bff 288 PANTHER PTHR33392 1 288 3.3E-65 T 14-09-2016 ccrud_RS13240 aada9a01f573882450cc98029fcf5bff 288 PANTHER PTHR33392:SF6 1 288 3.3E-65 T 14-09-2016 ccrud_RS13240 aada9a01f573882450cc98029fcf5bff 288 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 67 209 7.9E-38 T 14-09-2016 IPR004474 Cell envelope-related transcriptional attenuator domain ccrud_RS08450 ad6e9aa0570c384db7ed1feb4bf04ed0 199 Gene3D G3DSA:1.10.10.10 87 132 3.1E-6 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08450 ad6e9aa0570c384db7ed1feb4bf04ed0 199 Gene3D G3DSA:1.10.10.10 41 86 8.1E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS08450 ad6e9aa0570c384db7ed1feb4bf04ed0 199 PANTHER PTHR33602 14 195 8.7E-18 T 14-09-2016 ccrud_RS08450 ad6e9aa0570c384db7ed1feb4bf04ed0 199 Pfam PF02631 RecX family 63 187 2.9E-24 T 14-09-2016 IPR003783 Regulatory protein RecX GO:0006282 ccrud_RS08450 ad6e9aa0570c384db7ed1feb4bf04ed0 199 Hamap MF_01114 Regulatory protein RecX [recX]. 25 193 14.528 T 14-09-2016 IPR003783 Regulatory protein RecX GO:0006282 ccrud_RS11765 a167fb7d0769ed7f7bf43d7cfd1a4318 177 Gene3D G3DSA:1.10.357.10 2 173 3.0E-32 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS11765 a167fb7d0769ed7f7bf43d7cfd1a4318 177 Pfam PF00440 Bacterial regulatory proteins, tetR family 9 53 2.0E-7 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS11765 a167fb7d0769ed7f7bf43d7cfd1a4318 177 PANTHER PTHR30055 6 173 9.7E-14 T 14-09-2016 ccrud_RS11765 a167fb7d0769ed7f7bf43d7cfd1a4318 177 SUPERFAMILY SSF46689 2 71 7.77E-15 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS11765 a167fb7d0769ed7f7bf43d7cfd1a4318 177 SUPERFAMILY SSF48498 76 174 1.11E-23 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS03185 4bd43974985188e0a2633fe1b0702f3f 507 PANTHER PTHR10366 19 327 6.3E-61 T 14-09-2016 ccrud_RS03185 4bd43974985188e0a2633fe1b0702f3f 507 Pfam PF13460 NAD(P)H-binding 24 135 1.0E-20 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03185 4bd43974985188e0a2633fe1b0702f3f 507 Pfam PF11066 Protein of unknown function (DUF2867) 351 495 4.5E-34 T 14-09-2016 IPR021295 Protein of unknown function DUF2867 ccrud_RS03185 4bd43974985188e0a2633fe1b0702f3f 507 Gene3D G3DSA:3.40.50.720 17 250 5.0E-37 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03185 4bd43974985188e0a2633fe1b0702f3f 507 SUPERFAMILY SSF51735 18 268 8.24E-40 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS03185 4bd43974985188e0a2633fe1b0702f3f 507 PANTHER PTHR10366:SF401 19 327 6.3E-61 T 14-09-2016 ccrud_RS03185 4bd43974985188e0a2633fe1b0702f3f 507 SUPERFAMILY SSF55961 362 485 1.17E-8 T 14-09-2016 ccrud_RS05930 20cb87ebe4db49ceeda4fba08dfc1268 382 Pfam PF07805 HipA-like N-terminal domain 137 211 8.6E-10 T 14-09-2016 IPR012894 HipA, N-terminal subdomain 2 ccrud_RS05930 20cb87ebe4db49ceeda4fba08dfc1268 382 PANTHER PTHR37419 1 312 6.2E-13 T 14-09-2016 ccrud_RS05930 20cb87ebe4db49ceeda4fba08dfc1268 382 Pfam PF07804 HipA-like C-terminal domain 217 352 1.1E-27 T 14-09-2016 IPR012893 HipA-like, C-terminal ccrud_RS05930 20cb87ebe4db49ceeda4fba08dfc1268 382 TIGRFAM TIGR03071 couple_hipA: HipA N-terminal domain 5 101 8.4E-26 T 14-09-2016 IPR017508 HipA, N-terminal subdomain 1 ccrud_RS05930 20cb87ebe4db49ceeda4fba08dfc1268 382 Pfam PF13657 HipA N-terminal domain 5 100 2.9E-18 T 14-09-2016 IPR017508 HipA, N-terminal subdomain 1 ccrud_RS04820 7d60e630d282734c874ee51fe6a0c357 184 PANTHER PTHR37163:SF1 1 177 8.2E-36 T 14-09-2016 ccrud_RS04820 7d60e630d282734c874ee51fe6a0c357 184 PANTHER PTHR37163 1 177 8.2E-36 T 14-09-2016 ccrud_RS04820 7d60e630d282734c874ee51fe6a0c357 184 Pfam PF04417 Protein of unknown function (DUF501) 28 136 1.4E-23 T 14-09-2016 IPR007511 Protein of unknown function DUF501 ccrud_RS12145 ae1a28210e26d4aaa4891bce90e5bcff 201 PANTHER PTHR11109 13 201 1.3E-103 T 14-09-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 ccrud_RS12145 ae1a28210e26d4aaa4891bce90e5bcff 201 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 76 92 - T 14-09-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 ccrud_RS12145 ae1a28210e26d4aaa4891bce90e5bcff 201 SUPERFAMILY SSF55620 12 199 1.56E-75 T 14-09-2016 ccrud_RS12145 ae1a28210e26d4aaa4891bce90e5bcff 201 Pfam PF01227 GTP cyclohydrolase I 21 198 9.0E-77 T 14-09-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 ccrud_RS12145 ae1a28210e26d4aaa4891bce90e5bcff 201 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 126 136 - T 14-09-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 ccrud_RS12145 ae1a28210e26d4aaa4891bce90e5bcff 201 Gene3D G3DSA:1.10.286.10 15 67 9.4E-24 T 14-09-2016 ccrud_RS12145 ae1a28210e26d4aaa4891bce90e5bcff 201 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 22 199 6.7E-72 T 14-09-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 ccrud_RS12145 ae1a28210e26d4aaa4891bce90e5bcff 201 Gene3D G3DSA:3.30.1130.10 69 199 2.0E-58 T 14-09-2016 ccrud_RS12145 ae1a28210e26d4aaa4891bce90e5bcff 201 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 16 199 41.32 T 14-09-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 ccrud_RS03205 89741d8ec8c743690b871037df8b8100 241 SMART SM00382 42 230 1.2E-12 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS03205 89741d8ec8c743690b871037df8b8100 241 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS03205 89741d8ec8c743690b871037df8b8100 241 Gene3D G3DSA:3.40.50.300 12 234 9.2E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03205 89741d8ec8c743690b871037df8b8100 241 PANTHER PTHR24220 15 232 4.8E-79 T 14-09-2016 ccrud_RS03205 89741d8ec8c743690b871037df8b8100 241 Pfam PF00005 ABC transporter 33 181 3.5E-35 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS03205 89741d8ec8c743690b871037df8b8100 241 SUPERFAMILY SSF52540 14 235 2.79E-63 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07290 222e77a8ab98648fa567fe6ca2c296df 86 SUPERFAMILY SSF47413 11 82 2.06E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS07290 222e77a8ab98648fa567fe6ca2c296df 86 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 7 80 5.6E-21 T 14-09-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 ccrud_RS07290 222e77a8ab98648fa567fe6ca2c296df 86 PANTHER PTHR36924 5 79 1.6E-19 T 14-09-2016 ccrud_RS07290 222e77a8ab98648fa567fe6ca2c296df 86 Gene3D G3DSA:1.10.260.40 7 82 6.3E-22 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS07290 222e77a8ab98648fa567fe6ca2c296df 86 PANTHER PTHR36924:SF2 5 79 1.6E-19 T 14-09-2016 ccrud_RS07290 222e77a8ab98648fa567fe6ca2c296df 86 SMART SM00530 15 71 9.8E-4 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS07290 222e77a8ab98648fa567fe6ca2c296df 86 Pfam PF01381 Helix-turn-helix 23 71 5.3E-6 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 SUPERFAMILY SSF52540 540 769 2.66E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 Pfam PF12419 SNF2 Helicase protein 331 449 4.5E-32 T 14-09-2016 IPR022138 Helicase SWF/SNF-related ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 SUPERFAMILY SSF52540 773 1028 9.46E-57 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 Pfam PF00176 SNF2 family N-terminal domain 568 838 2.0E-58 T 14-09-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 Gene3D G3DSA:3.40.50.300 854 1000 3.7E-15 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 Gene3D G3DSA:3.40.50.300 544 725 4.5E-26 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 Pfam PF00271 Helicase conserved C-terminal domain 857 970 8.4E-13 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 SMART SM00490 886 970 1.3E-16 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 PANTHER PTHR10799 527 1010 4.3E-158 T 14-09-2016 ccrud_RS05600 d6ab15ce45d656827d2f784c690da525 1034 SMART SM00487 549 742 7.2E-31 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS05650 164176e9b1b86a980088c57fba5b8ffb 179 PANTHER PTHR34406 4 178 5.7E-57 T 14-09-2016 ccrud_RS05650 164176e9b1b86a980088c57fba5b8ffb 179 SMART SM00867 7 176 1.1E-68 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ccrud_RS05650 164176e9b1b86a980088c57fba5b8ffb 179 Pfam PF04264 YceI-like domain 8 173 3.4E-44 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ccrud_RS05650 164176e9b1b86a980088c57fba5b8ffb 179 SUPERFAMILY SSF101874 6 178 3.14E-54 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ccrud_RS05650 164176e9b1b86a980088c57fba5b8ffb 179 PANTHER PTHR34406:SF1 4 178 5.7E-57 T 14-09-2016 ccrud_RS05650 164176e9b1b86a980088c57fba5b8ffb 179 Gene3D G3DSA:2.40.128.110 6 178 4.3E-59 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 4 406 43.767 T 14-09-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 Pfam PF01702 Queuine tRNA-ribosyltransferase 161 408 1.6E-72 T 14-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 Gene3D G3DSA:3.20.20.105 4 414 9.0E-135 T 14-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 PANTHER PTHR21148 132 414 4.0E-115 T 14-09-2016 ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 PANTHER PTHR21148 21 106 4.0E-115 T 14-09-2016 ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 PANTHER PTHR21148:SF26 132 414 4.0E-115 T 14-09-2016 ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 PANTHER PTHR21148:SF26 21 106 4.0E-115 T 14-09-2016 ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 19 412 4.2E-121 T 14-09-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 19 412 4.9E-116 T 14-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 ccrud_RS01225 5d526c09c2d026c4369fbee7aa42c0a1 417 SUPERFAMILY SSF51713 19 412 5.49E-120 T 14-09-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 ccrud_RS10960 94364f722bb03e56811cf8acc0b798ca 386 PANTHER PTHR11808:SF57 8 386 1.7E-209 T 14-09-2016 ccrud_RS10960 94364f722bb03e56811cf8acc0b798ca 386 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 383 2.0E-143 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 ccrud_RS10960 94364f722bb03e56811cf8acc0b798ca 386 Gene3D G3DSA:3.90.1150.10 253 385 1.6E-51 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS10960 94364f722bb03e56811cf8acc0b798ca 386 PIRSF PIRSF001434 2 386 6.9E-142 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 ccrud_RS10960 94364f722bb03e56811cf8acc0b798ca 386 SUPERFAMILY SSF53383 14 385 8.07E-117 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS10960 94364f722bb03e56811cf8acc0b798ca 386 Gene3D G3DSA:3.40.640.10 9 252 7.1E-92 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS10960 94364f722bb03e56811cf8acc0b798ca 386 PANTHER PTHR11808 8 386 1.7E-209 T 14-09-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 ccrud_RS10290 ec0b1827cb0b5a3997b199f5896c93db 276 PANTHER PTHR30465:SF10 11 273 3.4E-88 T 14-09-2016 ccrud_RS10290 ec0b1827cb0b5a3997b199f5896c93db 276 Gene3D G3DSA:1.10.3720.10 62 269 7.8E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10290 ec0b1827cb0b5a3997b199f5896c93db 276 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 89 271 9.7E-29 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10290 ec0b1827cb0b5a3997b199f5896c93db 276 PANTHER PTHR30465 11 273 3.4E-88 T 14-09-2016 ccrud_RS10290 ec0b1827cb0b5a3997b199f5896c93db 276 SUPERFAMILY SSF161098 66 254 5.23E-24 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 Pfam PF01264 Chorismate synthase 5 375 2.8E-117 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 PIRSF PIRSF001456 1 394 1.7E-133 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 Gene3D G3DSA:3.60.150.10 4 407 3.4E-152 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 SUPERFAMILY SSF103263 4 398 5.76E-135 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 ProSitePatterns PS00789 Chorismate synthase signature 3. 349 365 - T 14-09-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 Hamap MF_00300 Chorismate synthase [aroC]. 5 382 35.033 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 ProSitePatterns PS00788 Chorismate synthase signature 2. 142 158 - T 14-09-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 PANTHER PTHR21085 4 92 5.2E-168 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 PANTHER PTHR21085 115 406 5.2E-168 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 ProSitePatterns PS00787 Chorismate synthase signature 1. 11 26 - T 14-09-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS07855 31c5bb76eab369a492c467d4928bb982 410 TIGRFAM TIGR00033 aroC: chorismate synthase 5 380 1.8E-123 T 14-09-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 ccrud_RS06100 a6967e990ff61eaf30d3f0314722f1c4 213 ProDom PD072817 ANTIGEN WEIGHT MOLECULAR LOW CFP-6 CGL1269 SEQUENCING DIRECT 41 130 1.0E-39 T 14-09-2016 IPR020535 Low molecular weight antigen Cfp6 ccrud_RS06100 a6967e990ff61eaf30d3f0314722f1c4 213 Pfam PF10756 Bacterial PH domain 62 131 8.7E-14 T 14-09-2016 IPR019692 Protein of unknown function DUF2581 ccrud_RS11620 ed5443883b6ca2cc9f48c526a23a6938 261 Pfam PF11209 Protein of unknown function (DUF2993) 30 235 5.3E-10 T 14-09-2016 IPR021373 Protein of unknown function DUF2993 ccrud_RS00180 8f53cd3c5154cdd8ab92e4cfcce69286 288 Gene3D G3DSA:2.60.200.20 171 285 2.6E-27 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ccrud_RS00180 8f53cd3c5154cdd8ab92e4cfcce69286 288 Pfam PF00498 FHA domain 215 277 5.4E-17 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ccrud_RS00180 8f53cd3c5154cdd8ab92e4cfcce69286 288 SMART SM00240 213 263 5.2E-11 T 14-09-2016 IPR000253 Forkhead-associated (FHA) domain GO:0005515 ccrud_RS00180 8f53cd3c5154cdd8ab92e4cfcce69286 288 SUPERFAMILY SSF49879 156 286 5.74E-31 T 14-09-2016 IPR008984 SMAD/FHA domain GO:0005515 ccrud_RS00180 8f53cd3c5154cdd8ab92e4cfcce69286 288 Pfam PF12401 Protein of unknown function (DUF2662) 4 116 1.1E-31 T 14-09-2016 IPR022128 Protein of unknown function DUF3662 ccrud_RS10530 b84fbada7601963bbe22115fb0097176 347 PANTHER PTHR13903 33 325 2.7E-113 T 14-09-2016 IPR012093 Pirin ccrud_RS10530 b84fbada7601963bbe22115fb0097176 347 SUPERFAMILY SSF51182 47 308 3.23E-68 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS10530 b84fbada7601963bbe22115fb0097176 347 Pfam PF02678 Pirin 49 148 3.8E-30 T 14-09-2016 IPR003829 Pirin, N-terminal domain ccrud_RS10530 b84fbada7601963bbe22115fb0097176 347 Gene3D G3DSA:2.60.120.10 39 275 1.4E-61 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS10530 b84fbada7601963bbe22115fb0097176 347 Pfam PF05726 Pirin C-terminal cupin domain 200 299 2.7E-18 T 14-09-2016 IPR008778 Pirin, C-terminal domain ccrud_RS10530 b84fbada7601963bbe22115fb0097176 347 PANTHER PTHR13903:SF4 33 325 2.7E-113 T 14-09-2016 ccrud_RS00070 5e0dc6ba735bd88c95749d1fff9e8177 114 Pfam PF12089 Transmembrane domain of unknown function (DUF3566) 5 111 6.4E-29 T 14-09-2016 IPR021949 Domain of unknown function DUF3566. transmembrane ccrud_RS09130 1825c03c9e438cdcdc85f4c05665bd30 300 SUPERFAMILY SSF54593 178 288 1.02E-24 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS09130 1825c03c9e438cdcdc85f4c05665bd30 300 PANTHER PTHR10374:SF14 1 184 8.2E-36 T 14-09-2016 ccrud_RS09130 1825c03c9e438cdcdc85f4c05665bd30 300 Gene3D G3DSA:3.10.180.10 178 286 2.5E-18 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS09130 1825c03c9e438cdcdc85f4c05665bd30 300 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 180 271 4.3E-8 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ccrud_RS09130 1825c03c9e438cdcdc85f4c05665bd30 300 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 131 1.1E-5 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ccrud_RS09130 1825c03c9e438cdcdc85f4c05665bd30 300 SUPERFAMILY SSF54593 12 164 1.29E-28 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS09130 1825c03c9e438cdcdc85f4c05665bd30 300 Gene3D G3DSA:3.10.180.10 14 151 5.6E-18 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS09130 1825c03c9e438cdcdc85f4c05665bd30 300 PANTHER PTHR10374 1 184 8.2E-36 T 14-09-2016 ccrud_RS04515 e172ef8a2977ad7e80f326ca7eb1a69c 262 SUPERFAMILY SSF53613 21 259 1.03E-45 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS04515 e172ef8a2977ad7e80f326ca7eb1a69c 262 PANTHER PTHR10534 9 258 5.4E-57 T 14-09-2016 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 ccrud_RS04515 e172ef8a2977ad7e80f326ca7eb1a69c 262 PANTHER PTHR10534:SF6 9 258 5.4E-57 T 14-09-2016 ccrud_RS04515 e172ef8a2977ad7e80f326ca7eb1a69c 262 Pfam PF08543 Phosphomethylpyrimidine kinase 67 258 9.1E-18 T 14-09-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 ccrud_RS04515 e172ef8a2977ad7e80f326ca7eb1a69c 262 Gene3D G3DSA:3.40.1190.20 21 259 4.0E-49 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS10880 ab5d94c5572448ede17d0b0e76d1407a 435 Gene3D G3DSA:3.40.190.10 73 179 6.5E-11 T 14-09-2016 ccrud_RS10880 ab5d94c5572448ede17d0b0e76d1407a 435 PANTHER PTHR30061 1 435 1.6E-44 T 14-09-2016 ccrud_RS10880 ab5d94c5572448ede17d0b0e76d1407a 435 Pfam PF01547 Bacterial extracellular solute-binding protein 76 336 4.4E-25 T 14-09-2016 IPR006059 Solute-binding family 1 GO:0005215|GO:0006810 ccrud_RS10880 ab5d94c5572448ede17d0b0e76d1407a 435 SUPERFAMILY SSF53850 21 432 1.21E-62 T 14-09-2016 ccrud_RS10880 ab5d94c5572448ede17d0b0e76d1407a 435 Gene3D G3DSA:3.40.190.10 180 371 3.2E-33 T 14-09-2016 ccrud_RS09230 d22bfd4f396dcca41c0f55feb702ac01 271 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS09230 d22bfd4f396dcca41c0f55feb702ac01 271 Pfam PF00005 ABC transporter 22 179 1.3E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS09230 d22bfd4f396dcca41c0f55feb702ac01 271 SUPERFAMILY SSF52540 3 245 1.04E-55 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09230 d22bfd4f396dcca41c0f55feb702ac01 271 Gene3D G3DSA:3.40.50.300 3 246 2.4E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09230 d22bfd4f396dcca41c0f55feb702ac01 271 PANTHER PTHR24220 5 248 3.9E-71 T 14-09-2016 ccrud_RS09230 d22bfd4f396dcca41c0f55feb702ac01 271 SMART SM00382 30 228 1.3E-15 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS01460 d35906430148ca622d51db1ee37af996 451 PANTHER PTHR23508:SF1 17 450 7.0E-132 T 14-09-2016 ccrud_RS01460 d35906430148ca622d51db1ee37af996 451 PANTHER PTHR23508 17 450 7.0E-132 T 14-09-2016 ccrud_RS01460 d35906430148ca622d51db1ee37af996 451 Pfam PF00083 Sugar (and other) transporter 33 240 2.6E-17 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS01460 d35906430148ca622d51db1ee37af996 451 SUPERFAMILY SSF103473 19 446 9.42E-61 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS01460 d35906430148ca622d51db1ee37af996 451 Gene3D G3DSA:1.20.1250.20 73 229 7.5E-20 T 14-09-2016 ccrud_RS01460 d35906430148ca622d51db1ee37af996 451 Gene3D G3DSA:1.20.1250.20 245 445 2.1E-19 T 14-09-2016 ccrud_RS01460 d35906430148ca622d51db1ee37af996 451 Pfam PF07690 Major Facilitator Superfamily 264 438 7.3E-10 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS13310 49914d4e8654e29bafa6dc67c54e99b7 127 Pfam PF08000 Bacterial PH domain 14 120 9.3E-31 T 14-09-2016 IPR012544 Bacterial Pleckstrin homology domain ccrud_RS13310 49914d4e8654e29bafa6dc67c54e99b7 127 Gene3D G3DSA:2.30.29.50 16 103 1.9E-31 T 14-09-2016 IPR012544 Bacterial Pleckstrin homology domain ccrud_RS13310 49914d4e8654e29bafa6dc67c54e99b7 127 SUPERFAMILY SSF50729 11 121 1.41E-34 T 14-09-2016 IPR011993 PH domain-like ccrud_RS13310 49914d4e8654e29bafa6dc67c54e99b7 127 PANTHER PTHR35796 1 115 3.1E-19 T 14-09-2016 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 Gene3D G3DSA:1.10.357.20 263 435 2.1E-53 T 14-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 Gene3D G3DSA:3.10.580.10 116 246 1.2E-20 T 14-09-2016 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 Pfam PF01769 Divalent cation transporter 307 428 1.2E-28 T 14-09-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 TIGRFAM TIGR00400 mgtE: magnesium transporter 9 436 2.9E-108 T 14-09-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 SUPERFAMILY SSF158791 6 117 5.36E-19 T 14-09-2016 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 PANTHER PTHR41394 29 436 1.0E-38 T 14-09-2016 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 SMART SM00924 19 122 1.9E-21 T 14-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 Pfam PF00571 CBS domain 122 178 1.9E-6 T 14-09-2016 IPR000644 CBS domain ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 Pfam PF00571 CBS domain 186 234 5.5E-4 T 14-09-2016 IPR000644 CBS domain ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 Pfam PF03448 MgtE intracellular N domain 20 118 1.4E-18 T 14-09-2016 IPR006668 Magnesium transporter, MgtE intracellular domain ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 Gene3D G3DSA:1.25.60.10 6 115 1.3E-15 T 14-09-2016 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 SUPERFAMILY SSF161093 264 434 2.48E-47 T 14-09-2016 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 SUPERFAMILY SSF54631 121 253 8.46E-27 T 14-09-2016 ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 SMART SM00116 129 182 1.9 T 14-09-2016 IPR000644 CBS domain ccrud_RS01175 05caccc169db51d7626808cc5f1f91ef 436 SMART SM00116 192 240 0.98 T 14-09-2016 IPR000644 CBS domain ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 SUPERFAMILY SSF51306 63 115 2.14E-44 T 14-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 SUPERFAMILY SSF51306 146 263 2.14E-44 T 14-09-2016 IPR015927 Peptidase S24/S26A/S26B/S26C ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 ProSitePatterns PS00501 Signal peptidases I serine active site. 73 80 - T 14-09-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: REACT_15380 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 Pfam PF00717 Peptidase S24-like 71 117 4.7E-8 T 14-09-2016 IPR019759 Peptidase S24/S26A/S26B ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 151 163 1.1E-20 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 64 80 1.1E-20 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 211 230 1.1E-20 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 Gene3D G3DSA:2.10.109.10 61 161 1.9E-37 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 Gene3D G3DSA:2.10.109.10 211 265 1.9E-37 T 14-09-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 PANTHER PTHR12383:SF14 148 265 1.8E-49 T 14-09-2016 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 PANTHER PTHR12383:SF14 43 114 1.8E-49 T 14-09-2016 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 ProSitePatterns PS00761 Signal peptidases I signature 3. 216 229 - T 14-09-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 PANTHER PTHR12383 43 114 1.8E-49 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 PANTHER PTHR12383 148 265 1.8E-49 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 50 257 3.3E-38 T 14-09-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 ccrud_RS08865 5b7f3d9ce7eb5946060cb481e0687c72 270 Pfam PF10502 Signal peptidase, peptidase S26 150 254 2.8E-6 T 14-09-2016 IPR019533 Peptidase S26 ccrud_RS13810 9ee7c077100abe924721ec6499189198 255 PANTHER PTHR30136 8 252 2.9E-45 T 14-09-2016 ccrud_RS13810 9ee7c077100abe924721ec6499189198 255 Pfam PF01614 Bacterial transcriptional regulator 127 249 2.4E-21 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal ccrud_RS13810 9ee7c077100abe924721ec6499189198 255 Gene3D G3DSA:3.30.450.40 79 252 1.6E-43 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS13810 9ee7c077100abe924721ec6499189198 255 SMART SM00346 11 99 1.6E-11 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS13810 9ee7c077100abe924721ec6499189198 255 SUPERFAMILY SSF55781 67 252 2.42E-38 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS13810 9ee7c077100abe924721ec6499189198 255 Gene3D G3DSA:1.10.10.10 10 76 1.8E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13810 9ee7c077100abe924721ec6499189198 255 Pfam PF09339 IclR helix-turn-helix domain 13 62 1.4E-12 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS13810 9ee7c077100abe924721ec6499189198 255 SUPERFAMILY SSF46785 11 75 4.32E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 SUPERFAMILY SSF56024 78 321 6.91E-43 T 14-09-2016 ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 Gene3D G3DSA:3.30.870.10 318 498 2.6E-30 T 14-09-2016 ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 Gene3D G3DSA:3.30.870.10 110 317 2.9E-39 T 14-09-2016 ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 SMART SM00155 219 246 1.8 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 SMART SM00155 406 440 25.0 T 14-09-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 PANTHER PTHR21248 21 499 9.0E-75 T 14-09-2016 ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 Pfam PF13396 Phospholipase_D-nuclease N-terminal 31 60 6.2E-6 T 14-09-2016 IPR027379 Cardiolipin synthase N-terminal ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 Pfam PF13091 PLD-like domain 337 464 5.2E-24 T 14-09-2016 IPR025202 Phospholipase D-like domain ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 Pfam PF13091 PLD-like domain 135 279 1.3E-14 T 14-09-2016 IPR025202 Phospholipase D-like domain ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 PANTHER PTHR21248:SF9 21 499 9.0E-75 T 14-09-2016 ccrud_RS12385 29eb2a0f2df83e1432346978e5964af7 500 SUPERFAMILY SSF56024 274 487 7.63E-38 T 14-09-2016 ccrud_RS01545 2e25d3b8c5e3a9e51cc8d5c68edd5bc6 353 TIGRFAM TIGR03815 CpaE_hom_Actino: helicase/secretion neighborhood CpaE-like protein 13 351 5.6E-86 T 14-09-2016 IPR022521 Conserved hypothetical protein CHP03815, CpaE-like ccrud_RS01545 2e25d3b8c5e3a9e51cc8d5c68edd5bc6 353 PANTHER PTHR13696:SF64 63 328 1.8E-14 T 14-09-2016 ccrud_RS01545 2e25d3b8c5e3a9e51cc8d5c68edd5bc6 353 PANTHER PTHR13696 63 328 1.8E-14 T 14-09-2016 ccrud_RS01545 2e25d3b8c5e3a9e51cc8d5c68edd5bc6 353 SUPERFAMILY SSF52540 121 328 4.07E-12 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01545 2e25d3b8c5e3a9e51cc8d5c68edd5bc6 353 Gene3D G3DSA:3.40.50.300 120 325 1.5E-10 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 SUPERFAMILY SSF103473 476 510 2.62E-36 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 SUPERFAMILY SSF103473 188 419 2.62E-36 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 12 500 2.3E-74 T 14-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 PANTHER PTHR23501:SF73 2 511 1.4E-177 T 14-09-2016 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 Pfam PF07690 Major Facilitator Superfamily 16 409 9.8E-58 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 PANTHER PTHR23501 2 511 1.4E-177 T 14-09-2016 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 SUPERFAMILY SSF103473 7 188 5.89E-42 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 Gene3D G3DSA:1.20.1250.20 479 510 1.1E-24 T 14-09-2016 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 Gene3D G3DSA:1.20.1250.20 263 425 1.1E-24 T 14-09-2016 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 Gene3D G3DSA:1.20.1250.20 13 192 9.6E-33 T 14-09-2016 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 74 96 4.1E-9 T 14-09-2016 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 15 39 4.1E-9 T 14-09-2016 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 400 419 4.1E-9 T 14-09-2016 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 201 219 4.1E-9 T 14-09-2016 ccrud_RS02045 e6a2f9399d71b5353660ff02c87b0c7b 511 PRINTS PR01036 Tetracycline resistance protein TetB signature 135 159 4.1E-9 T 14-09-2016 ccrud_RS02920 e2970b22ffde1da62bb227318458449d 418 PANTHER PTHR40765 5 246 1.4E-29 T 14-09-2016 ccrud_RS02920 e2970b22ffde1da62bb227318458449d 418 TIGRFAM TIGR03919 T7SS_EccB: type VII secretion protein EccB 9 409 1.1E-87 T 14-09-2016 IPR007795 Type VII secretion system EccB ccrud_RS02920 e2970b22ffde1da62bb227318458449d 418 PANTHER PTHR40765:SF1 5 246 1.4E-29 T 14-09-2016 ccrud_RS02920 e2970b22ffde1da62bb227318458449d 418 Pfam PF05108 Type VII secretion system ESX-1, transport TM domain B 8 247 8.2E-51 T 14-09-2016 IPR007795 Type VII secretion system EccB ccrud_RS02920 e2970b22ffde1da62bb227318458449d 418 Pfam PF05108 Type VII secretion system ESX-1, transport TM domain B 341 415 4.4E-8 T 14-09-2016 IPR007795 Type VII secretion system EccB ccrud_RS05210 de098508c6cb43f7511e8fcce31a8062 252 Pfam PF02361 Cobalt transport protein 2 206 8.8E-15 T 14-09-2016 IPR003339 ABC/ECF transporter, transmembrane component ccrud_RS05210 de098508c6cb43f7511e8fcce31a8062 252 PANTHER PTHR33514 7 246 4.0E-18 T 14-09-2016 ccrud_RS13585 c35a4f56dc36a733339f5629f5678655 392 PANTHER PTHR23501 14 388 8.9E-45 T 14-09-2016 ccrud_RS13585 c35a4f56dc36a733339f5629f5678655 392 PANTHER PTHR23501:SF4 14 388 8.9E-45 T 14-09-2016 ccrud_RS13585 c35a4f56dc36a733339f5629f5678655 392 SUPERFAMILY SSF103473 11 389 4.97E-43 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13585 c35a4f56dc36a733339f5629f5678655 392 Gene3D G3DSA:1.20.1250.20 17 198 7.4E-23 T 14-09-2016 ccrud_RS13585 c35a4f56dc36a733339f5629f5678655 392 Gene3D G3DSA:1.20.1250.20 210 388 1.4E-5 T 14-09-2016 ccrud_RS13585 c35a4f56dc36a733339f5629f5678655 392 Pfam PF07690 Major Facilitator Superfamily 21 341 5.7E-32 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS10870 65b4dbb5c963f5e6997ff564b820e582 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 118 301 2.3E-19 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10870 65b4dbb5c963f5e6997ff564b820e582 308 PANTHER PTHR32243 32 308 8.0E-76 T 14-09-2016 ccrud_RS10870 65b4dbb5c963f5e6997ff564b820e582 308 PANTHER PTHR32243:SF18 32 308 8.0E-76 T 14-09-2016 ccrud_RS10870 65b4dbb5c963f5e6997ff564b820e582 308 Gene3D G3DSA:1.10.3720.10 36 295 1.8E-53 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10870 65b4dbb5c963f5e6997ff564b820e582 308 SUPERFAMILY SSF161098 40 308 5.23E-63 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS03535 ea01301690ffbf4a2b566e4b199fc75e 428 SUPERFAMILY SSF51679 3 427 9.29E-118 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS03535 ea01301690ffbf4a2b566e4b199fc75e 428 Pfam PF00296 Luciferase-like monooxygenase 39 381 2.6E-60 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS03535 ea01301690ffbf4a2b566e4b199fc75e 428 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 8 425 9.5E-152 T 14-09-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 ccrud_RS03535 ea01301690ffbf4a2b566e4b199fc75e 428 Gene3D G3DSA:3.20.20.30 343 427 2.8E-124 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS03535 ea01301690ffbf4a2b566e4b199fc75e 428 Gene3D G3DSA:3.20.20.30 2 302 2.8E-124 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS03535 ea01301690ffbf4a2b566e4b199fc75e 428 PIRSF PIRSF000337 1 428 3.4E-140 T 14-09-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 ccrud_RS03535 ea01301690ffbf4a2b566e4b199fc75e 428 PANTHER PTHR30011 1 426 1.0E-133 T 14-09-2016 ccrud_RS03535 ea01301690ffbf4a2b566e4b199fc75e 428 PANTHER PTHR30011:SF18 1 426 1.0E-133 T 14-09-2016 ccrud_RS02815 3b6a017f8a4c0d974ecd5d80c1b3ef19 364 Gene3D G3DSA:3.30.1490.20 21 193 1.2E-56 T 14-09-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 ccrud_RS02815 3b6a017f8a4c0d974ecd5d80c1b3ef19 364 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 23 342 7.1E-102 T 14-09-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 ccrud_RS02815 3b6a017f8a4c0d974ecd5d80c1b3ef19 364 SUPERFAMILY SSF56059 7 334 1.01E-90 T 14-09-2016 ccrud_RS02815 3b6a017f8a4c0d974ecd5d80c1b3ef19 364 Gene3D G3DSA:3.30.470.20 194 342 3.0E-45 T 14-09-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 ccrud_RS02815 3b6a017f8a4c0d974ecd5d80c1b3ef19 364 PANTHER PTHR22931 9 333 3.7E-96 T 14-09-2016 ccrud_RS02815 3b6a017f8a4c0d974ecd5d80c1b3ef19 364 PANTHER PTHR22931:SF7 9 333 3.7E-96 T 14-09-2016 ccrud_RS00915 d6f77973a7edde475a6b78d46045f168 265 PANTHER PTHR18901 122 218 8.8E-15 T 14-09-2016 ccrud_RS00915 d6f77973a7edde475a6b78d46045f168 265 Gene3D G3DSA:3.40.50.1000 116 256 2.5E-26 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS00915 d6f77973a7edde475a6b78d46045f168 265 Gene3D G3DSA:3.40.50.1000 7 26 2.5E-26 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS00915 d6f77973a7edde475a6b78d46045f168 265 Pfam PF13419 Haloacid dehalogenase-like hydrolase 119 219 3.8E-15 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS00915 d6f77973a7edde475a6b78d46045f168 265 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 115 217 3.8E-8 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS00915 d6f77973a7edde475a6b78d46045f168 265 SUPERFAMILY SSF56784 116 257 1.65E-29 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS00915 d6f77973a7edde475a6b78d46045f168 265 SUPERFAMILY SSF56784 7 26 1.65E-29 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 Gene3D G3DSA:2.40.10.10 191 268 6.2E-14 T 14-09-2016 ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 PRINTS PR00839 V8 serine protease family signature 220 237 6.8E-6 T 14-09-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 PRINTS PR00839 V8 serine protease family signature 331 347 6.8E-6 T 14-09-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 PRINTS PR00839 V8 serine protease family signature 348 360 6.8E-6 T 14-09-2016 IPR008256 Peptidase S1B GO:0006508|GO:0008236 ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 SUPERFAMILY SSF50494 194 382 4.19E-32 T 14-09-2016 IPR009003 Peptidase S1, PA clan ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 Pfam PF02674 Colicin V production protein 8 150 4.2E-17 T 14-09-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 Gene3D G3DSA:2.40.10.10 272 383 3.1E-14 T 14-09-2016 ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 Pfam PF13365 Trypsin-like peptidase domain 220 356 1.0E-17 T 14-09-2016 ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 PANTHER PTHR22939 54 383 5.5E-50 T 14-09-2016 ccrud_RS01525 f94ad40db6020be9a6f62d59151d44b5 398 PANTHER PTHR22939:SF106 54 383 5.5E-50 T 14-09-2016 ccrud_RS00665 11e2f07ee76f7fc20c143595c25573b7 303 Pfam PF07859 alpha/beta hydrolase fold 67 278 2.1E-65 T 14-09-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 ccrud_RS00665 11e2f07ee76f7fc20c143595c25573b7 303 PANTHER PTHR23024 42 296 3.3E-74 T 14-09-2016 ccrud_RS00665 11e2f07ee76f7fc20c143595c25573b7 303 PANTHER PTHR23024:SF24 42 296 3.3E-74 T 14-09-2016 ccrud_RS00665 11e2f07ee76f7fc20c143595c25573b7 303 Gene3D G3DSA:3.40.50.1820 29 301 3.9E-78 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00665 11e2f07ee76f7fc20c143595c25573b7 303 SUPERFAMILY SSF53474 46 299 2.01E-62 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 PANTHER PTHR10584:SF166 1 296 6.7E-74 T 14-09-2016 ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 Gene3D G3DSA:3.40.1190.20 2 297 6.4E-79 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 PANTHER PTHR10584 1 296 6.7E-74 T 14-09-2016 ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 SUPERFAMILY SSF53613 4 296 7.48E-68 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 PRINTS PR00990 Ribokinase signature 34 53 2.5E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 PRINTS PR00990 Ribokinase signature 170 185 2.5E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 PRINTS PR00990 Ribokinase signature 7 28 2.5E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 PRINTS PR00990 Ribokinase signature 105 118 2.5E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 PRINTS PR00990 Ribokinase signature 216 227 2.5E-28 T 14-09-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 ccrud_RS10325 6f2cf5a7063049b49cad757d6763f9ca 301 Pfam PF00294 pfkB family carbohydrate kinase 3 293 1.6E-58 T 14-09-2016 IPR011611 Carbohydrate kinase PfkB ccrud_RS03905 84e345e835dbc1976997df1352fdc57c 117 PANTHER PTHR36849:SF1 1 116 6.9E-38 T 14-09-2016 ccrud_RS03905 84e345e835dbc1976997df1352fdc57c 117 Pfam PF04343 Protein of unknown function, DUF488 8 115 8.8E-31 T 14-09-2016 IPR007438 Protein of unknown function DUF488 ccrud_RS03905 84e345e835dbc1976997df1352fdc57c 117 PANTHER PTHR36849 1 116 6.9E-38 T 14-09-2016 ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 PANTHER PTHR11918:SF43 21 518 1.3E-167 T 14-09-2016 ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 SUPERFAMILY SSF102114 158 399 2.22E-56 T 14-09-2016 ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 PANTHER PTHR11918 21 518 1.3E-167 T 14-09-2016 IPR023970 Methylthiotransferase/radical SAM-type protein ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 175 195 - T 14-09-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 Gene3D G3DSA:3.80.30.20 173 407 2.2E-80 T 14-09-2016 IPR023404 Radical SAM, alpha/beta horseshoe ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 SMART SM00729 171 392 1.2E-57 T 14-09-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 29 472 2.6E-147 T 14-09-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 Hamap MF_01864 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]. 28 477 65.638 T 14-09-2016 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB GO:0005737|GO:0006400|GO:0016740|GO:0051539 ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 30 472 1.1E-136 T 14-09-2016 ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 Pfam PF00919 Uncharacterized protein family UPF0004 30 128 2.0E-26 T 14-09-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 ccrud_RS08425 ae7ff505f05de91e7d0d3af1645a6b73 526 Pfam PF04055 Radical SAM superfamily 175 352 1.1E-29 T 14-09-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 ccrud_RS03170 a591d4a4e8a1054cba33d5c70dc8e7ae 372 SUPERFAMILY SSF48576 15 371 4.17E-62 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS03170 a591d4a4e8a1054cba33d5c70dc8e7ae 372 Pfam PF00348 Polyprenyl synthetase 47 314 1.7E-47 T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 ccrud_RS03170 a591d4a4e8a1054cba33d5c70dc8e7ae 372 PANTHER PTHR12001 142 372 1.1E-35 T 14-09-2016 IPR017446 Polyprenyl synthetase-related ccrud_RS03170 a591d4a4e8a1054cba33d5c70dc8e7ae 372 PANTHER PTHR12001 15 119 1.1E-35 T 14-09-2016 IPR017446 Polyprenyl synthetase-related ccrud_RS03170 a591d4a4e8a1054cba33d5c70dc8e7ae 372 Gene3D G3DSA:1.10.600.10 22 371 2.5E-67 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS03170 a591d4a4e8a1054cba33d5c70dc8e7ae 372 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 101 115 - T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 ccrud_RS02765 38a67656e0000e7888909fdfe4fa629b 134 SUPERFAMILY SSF53137 21 132 6.32E-49 T 14-09-2016 ccrud_RS02765 38a67656e0000e7888909fdfe4fa629b 134 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 23 134 6.0E-41 T 14-09-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02765 38a67656e0000e7888909fdfe4fa629b 134 PANTHER PTHR12899 20 134 3.0E-36 T 14-09-2016 ccrud_RS02765 38a67656e0000e7888909fdfe4fa629b 134 Gene3D G3DSA:3.30.420.100 38 134 1.8E-37 T 14-09-2016 ccrud_RS02765 38a67656e0000e7888909fdfe4fa629b 134 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 20 134 1.1E-48 T 14-09-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02765 38a67656e0000e7888909fdfe4fa629b 134 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 20 134 27.876 T 14-09-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS03965 1b0dcba2520eaa645d9f7e30ce5a6177 87 SUPERFAMILY SSF140931 32 87 6.28E-5 T 14-09-2016 IPR003812 Fido domain ccrud_RS03965 1b0dcba2520eaa645d9f7e30ce5a6177 87 Pfam PF02661 Fic/DOC family 25 83 6.2E-6 T 14-09-2016 IPR003812 Fido domain ccrud_RS01335 2ce4844ee2f723ffcf0fa2fc46810570 200 Pfam PF00440 Bacterial regulatory proteins, tetR family 23 64 3.7E-7 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS01335 2ce4844ee2f723ffcf0fa2fc46810570 200 SUPERFAMILY SSF48498 116 182 2.06E-9 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS01335 2ce4844ee2f723ffcf0fa2fc46810570 200 Gene3D G3DSA:1.10.10.60 14 59 5.5E-10 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS01335 2ce4844ee2f723ffcf0fa2fc46810570 200 Gene3D G3DSA:1.10.357.10 63 177 9.3E-12 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS01335 2ce4844ee2f723ffcf0fa2fc46810570 200 SUPERFAMILY SSF46689 15 73 1.4E-8 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS05055 369ac349dfffa02279db97b078131206 107 Gene3D G3DSA:3.40.50.720 2 106 3.2E-13 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05055 369ac349dfffa02279db97b078131206 107 Pfam PF13460 NAD(P)H-binding 2 95 2.6E-15 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS05055 369ac349dfffa02279db97b078131206 107 SUPERFAMILY SSF51735 25 106 5.91E-7 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06335 476a269e1cca9b8dd86741b987f874f8 386 Pfam PF07724 AAA domain (Cdc48 subfamily) 171 290 8.9E-10 T 14-09-2016 IPR003959 ATPase, AAA-type, core GO:0005524 ccrud_RS06335 476a269e1cca9b8dd86741b987f874f8 386 Gene3D G3DSA:3.40.50.300 128 326 2.2E-23 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06335 476a269e1cca9b8dd86741b987f874f8 386 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 172 190 7.4E-7 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS06335 476a269e1cca9b8dd86741b987f874f8 386 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 269 283 7.4E-7 T 14-09-2016 IPR001270 ClpA/B family GO:0005524 ccrud_RS06335 476a269e1cca9b8dd86741b987f874f8 386 SMART SM00382 168 309 1.1E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06335 476a269e1cca9b8dd86741b987f874f8 386 SUPERFAMILY SSF52540 127 368 2.45E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03315 b92711cfc83008cf35f66acb945053d8 342 SUPERFAMILY SSF81345 14 333 7.85E-66 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS03315 b92711cfc83008cf35f66acb945053d8 342 Pfam PF01032 FecCD transport family 30 333 2.3E-76 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03315 b92711cfc83008cf35f66acb945053d8 342 PANTHER PTHR30472 17 340 3.0E-85 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03315 b92711cfc83008cf35f66acb945053d8 342 PANTHER PTHR30472:SF24 17 340 3.0E-85 T 14-09-2016 ccrud_RS03315 b92711cfc83008cf35f66acb945053d8 342 Gene3D G3DSA:1.10.3470.10 14 337 4.0E-84 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS07255 3f465f7501b51d13599189359e0f66b7 482 Pfam PF03136 Pup-ligase protein 11 442 1.5E-149 T 14-09-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 ccrud_RS07255 3f465f7501b51d13599189359e0f66b7 482 Hamap MF_02111 Pup--protein ligase [pafA]. 8 473 49.741 T 14-09-2016 IPR022279 Pup--protein ligase GO:0010498|GO:0016879|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 ccrud_RS07255 3f465f7501b51d13599189359e0f66b7 482 PANTHER PTHR42307 4 473 1.7E-175 T 14-09-2016 ccrud_RS07255 3f465f7501b51d13599189359e0f66b7 482 PANTHER PTHR42307:SF1 4 473 1.7E-175 T 14-09-2016 ccrud_RS07255 3f465f7501b51d13599189359e0f66b7 482 PIRSF PIRSF018077 1 482 3.6E-181 T 14-09-2016 IPR004347 Pup ligase/deamidase GO:0010498|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 ccrud_RS07255 3f465f7501b51d13599189359e0f66b7 482 TIGRFAM TIGR03686 pupylate_PafA: Pup--protein ligase 10 473 1.8E-222 T 14-09-2016 IPR022279 Pup--protein ligase GO:0010498|GO:0016879|GO:0019941 UniPathway: UPA00997|UniPathway: UPA00998 ccrud_RS13195 d01ea0251430a04d22005fb7788fdcb0 223 SUPERFAMILY SSF53254 2 217 2.09E-45 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS13195 d01ea0251430a04d22005fb7788fdcb0 223 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 216 2.1E-41 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS13195 d01ea0251430a04d22005fb7788fdcb0 223 PANTHER PTHR23029 4 216 2.4E-39 T 14-09-2016 ccrud_RS13195 d01ea0251430a04d22005fb7788fdcb0 223 SMART SM00855 4 174 7.0E-21 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS13195 d01ea0251430a04d22005fb7788fdcb0 223 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 14-09-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 ccrud_RS13195 d01ea0251430a04d22005fb7788fdcb0 223 Gene3D G3DSA:3.40.50.1240 1 206 5.0E-46 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS03570 83d000464caec5717b799128e612b2e5 344 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 108 305 1.9E-20 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS03570 83d000464caec5717b799128e612b2e5 344 PANTHER PTHR30406:SF2 6 67 1.4E-77 T 14-09-2016 ccrud_RS03570 83d000464caec5717b799128e612b2e5 344 SUPERFAMILY SSF161098 7 305 1.83E-57 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS03570 83d000464caec5717b799128e612b2e5 344 PANTHER PTHR30406 86 312 1.4E-77 T 14-09-2016 ccrud_RS03570 83d000464caec5717b799128e612b2e5 344 Gene3D G3DSA:1.10.3720.10 5 299 2.2E-64 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS03570 83d000464caec5717b799128e612b2e5 344 PANTHER PTHR30406:SF2 86 312 1.4E-77 T 14-09-2016 ccrud_RS03570 83d000464caec5717b799128e612b2e5 344 PANTHER PTHR30406 6 67 1.4E-77 T 14-09-2016 ccrud_RS11350 91207b52ef27f21e4660a6a1e44196ca 162 Gene3D G3DSA:1.20.1260.10 2 161 3.4E-48 T 14-09-2016 IPR012347 Ferritin-related ccrud_RS11350 91207b52ef27f21e4660a6a1e44196ca 162 SUPERFAMILY SSF47240 3 161 4.16E-48 T 14-09-2016 IPR009078 Ferritin-like superfamily ccrud_RS11350 91207b52ef27f21e4660a6a1e44196ca 162 PANTHER PTHR11431:SF4 5 159 2.6E-33 T 14-09-2016 ccrud_RS11350 91207b52ef27f21e4660a6a1e44196ca 162 Pfam PF00210 Ferritin-like domain 10 143 3.5E-33 T 14-09-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 ccrud_RS11350 91207b52ef27f21e4660a6a1e44196ca 162 PANTHER PTHR11431 5 159 2.6E-33 T 14-09-2016 IPR001519 Ferritin GO:0006826|GO:0006879|GO:0008199 ccrud_RS08855 2be3fac7a4c8629a01a3d2d921985d1f 101 Pfam PF10611 Protein of unknown function (DUF2469) 1 100 3.3E-49 T 14-09-2016 IPR019592 Protein of unknown function DUF2469 ccrud_RS05190 27335fb246134b1bd757efed16dfddda 137 Gene3D G3DSA:3.10.180.10 10 136 1.3E-25 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS05190 27335fb246134b1bd757efed16dfddda 137 SUPERFAMILY SSF54593 4 135 4.77E-20 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS05190 27335fb246134b1bd757efed16dfddda 137 PANTHER PTHR33990 2 134 1.3E-18 T 14-09-2016 ccrud_RS07275 3a82d9fb42e0eba29ea9aa101589daa8 278 Pfam PF08704 tRNA methyltransferase complex GCD14 subunit 75 240 5.8E-17 T 14-09-2016 IPR014816 tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 GO:0016429|GO:0030488|GO:0031515 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829 ccrud_RS07275 3a82d9fb42e0eba29ea9aa101589daa8 278 PIRSF PIRSF017269 1 274 2.8E-79 T 14-09-2016 IPR014816 tRNA (1-methyladenosine) methyltransferase catalytic subunit Gcd14 GO:0016429|GO:0030488|GO:0031515 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829 ccrud_RS07275 3a82d9fb42e0eba29ea9aa101589daa8 278 PANTHER PTHR12133 5 274 3.1E-84 T 14-09-2016 ccrud_RS07275 3a82d9fb42e0eba29ea9aa101589daa8 278 SUPERFAMILY SSF53335 6 262 6.93E-68 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07275 3a82d9fb42e0eba29ea9aa101589daa8 278 Pfam PF14801 tRNA methyltransferase complex GCD14 subunit N-term 4 54 1.1E-27 T 14-09-2016 ccrud_RS07275 3a82d9fb42e0eba29ea9aa101589daa8 278 Gene3D G3DSA:3.10.330.20 2 67 1.0E-29 T 14-09-2016 ccrud_RS07275 3a82d9fb42e0eba29ea9aa101589daa8 278 Gene3D G3DSA:3.40.50.150 71 276 1.9E-57 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07275 3a82d9fb42e0eba29ea9aa101589daa8 278 PANTHER PTHR12133:SF1 5 274 3.1E-84 T 14-09-2016 ccrud_RS01795 30b646f54f621b945c196bc2419c672c 110 ProDom PD277113 MEMBRANE INNER YIDG TRANSMEMBRANE STY3975 RV2273/MT2334 MB2296 8 87 5.0E-28 T 14-09-2016 IPR020264 Uncharacterised protein family YidG ccrud_RS01795 30b646f54f621b945c196bc2419c672c 110 Pfam PF02656 Domain of unknown function (DUF202) 11 73 1.5E-10 T 14-09-2016 IPR003807 Domain of unknown function DUF202 ccrud_RS11795 8e741e28cd83e022531065370556da2d 97 Gene3D G3DSA:3.30.70.1060 2 90 8.6E-15 T 14-09-2016 ccrud_RS11795 8e741e28cd83e022531065370556da2d 97 Pfam PF03795 YCII-related domain 4 87 1.1E-11 T 14-09-2016 IPR005545 YCII-related ccrud_RS11795 8e741e28cd83e022531065370556da2d 97 SUPERFAMILY SSF54909 1 89 7.78E-17 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 145 2.5E-30 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 SUPERFAMILY SSF55804 4 144 1.7E-29 T 14-09-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 380 661 3.1E-90 T 14-09-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 180 270 5.4E-15 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 PANTHER PTHR30505 378 635 8.0E-209 T 14-09-2016 ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 PANTHER PTHR30505 42 348 8.0E-209 T 14-09-2016 ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 SUPERFAMILY SSF52794 177 274 8.02E-27 T 14-09-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 179 263 6.0E-23 T 14-09-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 Gene3D G3DSA:3.40.50.2300 175 276 2.8E-34 T 14-09-2016 ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 TIGRFAM TIGR00848 fruA: PTS system, fructose subfamily, IIA component 5 131 3.8E-36 T 14-09-2016 IPR004715 Phosphotransferase system, IIA component fructose subfamily GO:0008982|GO:0009401|GO:0016021 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 Gene3D G3DSA:3.40.930.10 2 145 3.3E-36 T 14-09-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 PANTHER PTHR30505:SF0 378 635 8.0E-209 T 14-09-2016 ccrud_RS08360 c7b1b868afe0cdf7275de4389c9d0c3d 683 PANTHER PTHR30505:SF0 42 348 8.0E-209 T 14-09-2016 ccrud_RS10535 c57b1f4bfc14acbcbde03960a8136a55 150 SUPERFAMILY SSF69118 12 148 3.4E-30 T 14-09-2016 IPR029032 AhpD-like ccrud_RS10535 c57b1f4bfc14acbcbde03960a8136a55 150 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 36 82 3.2E-15 T 14-09-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ccrud_RS10535 c57b1f4bfc14acbcbde03960a8136a55 150 Gene3D G3DSA:1.20.1290.10 14 148 8.9E-35 T 14-09-2016 IPR029032 AhpD-like ccrud_RS10535 c57b1f4bfc14acbcbde03960a8136a55 150 Pfam PF02627 Carboxymuconolactone decarboxylase family 28 99 2.4E-17 T 14-09-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ccrud_RS05645 b3c6f34613ef06d66968e839e6566c1f 463 PANTHER PTHR41983 1 459 9.3E-77 T 14-09-2016 ccrud_RS05645 b3c6f34613ef06d66968e839e6566c1f 463 Pfam PF02667 Short chain fatty acid transporter 8 456 5.2E-86 T 14-09-2016 IPR006160 Short chain fatty acid transporter AtoE ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 9.6E-36 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 9.6E-36 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 263 279 9.6E-36 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 9.6E-36 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 9.6E-36 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 SUPERFAMILY SSF55424 345 467 3.95E-37 T 14-09-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 Gene3D G3DSA:3.50.50.60 3 139 2.5E-38 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 327 6.5E-68 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 348 459 6.6E-35 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PIRSF PIRSF000350 1 466 2.4E-85 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 SUPERFAMILY SSF51905 2 336 7.0E-63 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 468 1.2E-177 T 14-09-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 Gene3D G3DSA:3.50.50.60 140 333 4.3E-52 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 14-09-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 Gene3D G3DSA:3.30.390.30 334 467 2.1E-43 T 14-09-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PANTHER PTHR22912:SF125 3 462 2.7E-185 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PANTHER PTHR22912 3 462 2.7E-185 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 411 426 2.0E-66 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 2.0E-66 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 344 365 2.0E-66 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 2.0E-66 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 2.0E-66 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 453 2.0E-66 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 2.0E-66 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 2.0E-66 T 14-09-2016 ccrud_RS01945 ba390240a2138eacae924504ccaaef56 469 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 2.0E-66 T 14-09-2016 ccrud_RS07610 9c16bd92b987652dcbd5613d763b8988 323 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 16 306 18.138 T 14-09-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 ccrud_RS07610 9c16bd92b987652dcbd5613d763b8988 323 Pfam PF01040 UbiA prenyltransferase family 33 273 7.0E-56 T 14-09-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 ccrud_RS07610 9c16bd92b987652dcbd5613d763b8988 323 PANTHER PTHR11048 12 307 4.1E-57 T 14-09-2016 ccrud_RS07610 9c16bd92b987652dcbd5613d763b8988 323 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 18 304 7.8E-86 T 14-09-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 ccrud_RS13545 9a46fbc8969b67774be57809e69e70f9 312 SMART SM00450 118 222 2.2E-11 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS13545 9a46fbc8969b67774be57809e69e70f9 312 PANTHER PTHR22778:SF21 5 309 6.1E-71 T 14-09-2016 ccrud_RS13545 9a46fbc8969b67774be57809e69e70f9 312 SUPERFAMILY SSF52821 116 219 3.4E-20 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS13545 9a46fbc8969b67774be57809e69e70f9 312 Hamap MF_00469 UPF0176 protein YceA [yceA]. 2 261 36.8 T 14-09-2016 IPR020936 Uncharacterised protein family UPF0176 ccrud_RS13545 9a46fbc8969b67774be57809e69e70f9 312 PANTHER PTHR22778 5 309 6.1E-71 T 14-09-2016 ccrud_RS13545 9a46fbc8969b67774be57809e69e70f9 312 Gene3D G3DSA:3.40.250.10 114 233 2.0E-26 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS13545 9a46fbc8969b67774be57809e69e70f9 312 Pfam PF12368 Rhodanase C-terminal 227 294 3.7E-14 T 14-09-2016 IPR022111 Rhodanase, C-terminal ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 PANTHER PTHR11070 9 251 1.5E-18 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 Pfam PF00580 UvrD/REP helicase N-terminal domain 131 215 3.5E-10 T 14-09-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 SUPERFAMILY SSF52540 590 619 4.16E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 SUPERFAMILY SSF52540 6 493 4.16E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 Gene3D G3DSA:3.40.50.300 8 82 9.0E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 Gene3D G3DSA:3.40.50.300 147 241 9.0E-27 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 Pfam PF13245 Part of AAA domain 8 66 1.0E-6 T 14-09-2016 ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 PANTHER PTHR11070:SF7 9 251 1.5E-18 T 14-09-2016 ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 Gene3D G3DSA:3.40.50.300 242 369 8.5E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 Gene3D G3DSA:3.40.50.300 454 489 8.5E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06325 68ee1131e9fce2ac11a939bc4a81fd80 640 Gene3D G3DSA:3.40.50.300 586 622 8.5E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05280 cebd4fffb087c9a3ce950c8bffc97604 115 Pfam PF00462 Glutaredoxin 3 47 8.2E-5 T 14-09-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 ccrud_RS05280 cebd4fffb087c9a3ce950c8bffc97604 115 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 3 113 3.8E-45 T 14-09-2016 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 ccrud_RS05280 cebd4fffb087c9a3ce950c8bffc97604 115 PANTHER PTHR30041 1 112 1.5E-31 T 14-09-2016 ccrud_RS05280 cebd4fffb087c9a3ce950c8bffc97604 115 SUPERFAMILY SSF52833 2 107 5.72E-31 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS05280 cebd4fffb087c9a3ce950c8bffc97604 115 Gene3D G3DSA:3.40.30.10 1 112 1.6E-42 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS05280 cebd4fffb087c9a3ce950c8bffc97604 115 PANTHER PTHR30041:SF4 1 112 1.5E-31 T 14-09-2016 ccrud_RS05280 cebd4fffb087c9a3ce950c8bffc97604 115 Pfam PF03960 ArsC family 57 106 1.1E-12 T 14-09-2016 IPR006660 Arsenate reductase-like ccrud_RS13815 6a1bdafa066d0df6240fa2b894bcbeae 293 Gene3D G3DSA:3.20.20.140 14 293 9.0E-62 T 14-09-2016 ccrud_RS13815 6a1bdafa066d0df6240fa2b894bcbeae 293 PANTHER PTHR20852:SF60 177 288 1.1E-35 T 14-09-2016 ccrud_RS13815 6a1bdafa066d0df6240fa2b894bcbeae 293 SUPERFAMILY SSF51556 15 292 1.74E-61 T 14-09-2016 IPR032466 Metal-dependent hydrolase ccrud_RS13815 6a1bdafa066d0df6240fa2b894bcbeae 293 Pfam PF04909 Amidohydrolase 15 292 3.1E-54 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 ccrud_RS13815 6a1bdafa066d0df6240fa2b894bcbeae 293 PANTHER PTHR20852 177 288 1.1E-35 T 14-09-2016 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 Pfam PF07517 SecA DEAD-like domain 9 379 8.1E-78 T 14-09-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 SMART SM00958 223 336 7.7E-31 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 SMART SM00957 7 380 5.4E-138 T 14-09-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 Pfam PF07516 SecA Wing and Scaffold domain 634 714 1.8E-13 T 14-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 Gene3D G3DSA:3.40.50.300 395 565 1.3E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 SUPERFAMILY SSF52540 346 391 1.63E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 SUPERFAMILY SSF52540 5 224 1.63E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 SUPERFAMILY SSF81886 572 722 1.44E-28 T 14-09-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 SUPERFAMILY SSF81767 233 344 7.72E-31 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 TIGRFAM TIGR04221 SecA2_Mycobac: accessory Sec system translocase SecA2 4 763 0.0 T 14-09-2016 IPR026389 Protein translocase subunit SecA, Actinobacteria-type ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 ProSitePatterns PS01312 SecA family signature. 478 493 - T 14-09-2016 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 Gene3D G3DSA:3.40.50.300 347 393 4.2E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 Gene3D G3DSA:3.40.50.300 5 224 4.2E-73 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 PRINTS PR00906 SecA protein signature 317 339 3.4E-28 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 PRINTS PR00906 SecA protein signature 354 371 3.4E-28 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 PRINTS PR00906 SecA protein signature 166 186 3.4E-28 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 PRINTS PR00906 SecA protein signature 59 83 3.4E-28 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 PRINTS PR00906 SecA protein signature 97 111 3.4E-28 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 PRINTS PR00906 SecA protein signature 391 404 3.4E-28 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 Pfam PF01043 SecA preprotein cross-linking domain 234 336 2.9E-23 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 SUPERFAMILY SSF52540 395 551 7.36E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 PANTHER PTHR30612 6 620 4.1E-183 T 14-09-2016 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 Gene3D G3DSA:3.90.1440.10 233 344 5.4E-33 T 14-09-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 ccrud_RS06965 1f205c4973037ee8ece56c7a6dc7acbb 763 Hamap MF_01382 Protein translocase subunit SecA [secA]. 6 720 15.662 T 14-09-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 ccrud_RS13760 b4638e8c9b692d383b2ec5927be26580 90 Gene3D G3DSA:3.40.50.720 3 80 7.6E-14 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13760 b4638e8c9b692d383b2ec5927be26580 90 SUPERFAMILY SSF51735 6 81 2.64E-14 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS13760 b4638e8c9b692d383b2ec5927be26580 90 Pfam PF00106 short chain dehydrogenase 4 80 1.4E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09265 ff8f5ea27e36196391f4517cdc0deb00 341 Gene3D G3DSA:1.10.287.860 158 206 4.4E-10 T 14-09-2016 ccrud_RS09265 ff8f5ea27e36196391f4517cdc0deb00 341 SUPERFAMILY SSF81301 12 206 1.32E-32 T 14-09-2016 ccrud_RS09265 ff8f5ea27e36196391f4517cdc0deb00 341 SMART SM00954 47 175 4.1E-21 T 14-09-2016 IPR007685 RelA/SpoT GO:0015969 ccrud_RS09265 ff8f5ea27e36196391f4517cdc0deb00 341 Gene3D G3DSA:3.30.460.10 44 155 3.6E-17 T 14-09-2016 ccrud_RS09265 ff8f5ea27e36196391f4517cdc0deb00 341 Pfam PF04607 Region found in RelA / SpoT proteins 47 172 7.7E-23 T 14-09-2016 IPR007685 RelA/SpoT GO:0015969 ccrud_RS04215 c89605f30c55c3777cbe64b11420e218 101 Pfam PF01817 Chorismate mutase type II 29 79 1.3E-8 T 14-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 ccrud_RS04215 c89605f30c55c3777cbe64b11420e218 101 SMART SM00830 29 97 6.0E-5 T 14-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 ccrud_RS04215 c89605f30c55c3777cbe64b11420e218 101 SUPERFAMILY SSF48600 24 84 7.48E-12 T 14-09-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 ccrud_RS04215 c89605f30c55c3777cbe64b11420e218 101 TIGRFAM TIGR01808 CM_M_hiGC-arch: chorismate mutase 24 98 1.4E-38 T 14-09-2016 IPR010958 Chorismate mutase, high GC Gram-positive bacteria/archaeal ccrud_RS04215 c89605f30c55c3777cbe64b11420e218 101 Gene3D G3DSA:1.20.59.10 14 77 2.1E-13 T 14-09-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 PANTHER PTHR23501:SF48 31 482 1.7E-124 T 14-09-2016 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 PANTHER PTHR23501 31 482 1.7E-124 T 14-09-2016 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 SUPERFAMILY SSF103473 233 483 1.96E-29 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 Gene3D G3DSA:1.20.1250.20 292 481 3.4E-19 T 14-09-2016 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 Gene3D G3DSA:1.20.1250.20 39 226 1.6E-38 T 14-09-2016 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 SUPERFAMILY SSF103473 30 223 1.57E-51 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 230 248 1.4E-13 T 14-09-2016 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 137 157 1.4E-13 T 14-09-2016 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 167 191 1.4E-13 T 14-09-2016 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 46 70 1.4E-13 T 14-09-2016 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 PRINTS PR01036 Tetracycline resistance protein TetB signature 432 451 1.4E-13 T 14-09-2016 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 44 450 1.1E-88 T 14-09-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 Pfam PF07690 Major Facilitator Superfamily 233 442 7.1E-22 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS05970 2d6ec5bee73af55a5ba233479724089e 496 Pfam PF07690 Major Facilitator Superfamily 47 224 9.5E-39 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 PANTHER PTHR11922:SF5 21 34 2.1E-87 T 14-09-2016 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 Pfam PF02885 Glycosyl transferase family, helical bundle domain 10 69 4.9E-9 T 14-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 SUPERFAMILY SSF47648 7 72 2.88E-11 T 14-09-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 PANTHER PTHR11922 67 349 2.1E-87 T 14-09-2016 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 PANTHER PTHR11922 21 34 2.1E-87 T 14-09-2016 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 14 334 1.2E-98 T 14-09-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 Gene3D G3DSA:1.20.970.10 11 73 7.2E-11 T 14-09-2016 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 SUPERFAMILY SSF52418 78 334 3.4E-75 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 Gene3D G3DSA:3.40.1030.10 77 334 4.0E-87 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 Pfam PF00591 Glycosyl transferase family, a/b domain 79 328 1.2E-90 T 14-09-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 PANTHER PTHR11922:SF5 67 349 2.1E-87 T 14-09-2016 ccrud_RS13700 d230eb14d4a1a731ab8691718321bf42 349 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 8 338 34.696 T 14-09-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 PANTHER PTHR30081 16 122 1.9E-124 T 14-09-2016 ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 46 562 6.9E-100 T 14-09-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 SUPERFAMILY SSF82866 362 568 1.22E-31 T 14-09-2016 ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 PANTHER PTHR30081 274 572 1.9E-124 T 14-09-2016 ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 Gene3D G3DSA:1.20.1640.10 403 568 1.7E-18 T 14-09-2016 ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 8 577 34.834 T 14-09-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 316 554 4.8E-59 T 14-09-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 PANTHER PTHR30081:SF4 16 122 1.9E-124 T 14-09-2016 ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 PANTHER PTHR30081:SF4 274 572 1.9E-124 T 14-09-2016 ccrud_RS08015 01ac993fd56a83ef357d82f3ff17309f 641 Pfam PF02355 Protein export membrane protein 396 565 3.3E-11 T 14-09-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 18 752 26.663 T 14-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Pfam PF00575 S1 RNA binding domain 677 746 2.1E-14 T 14-09-2016 IPR003029 S1 domain GO:0003676 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 SUPERFAMILY SSF50249 678 746 6.12E-15 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 26 747 6.4E-258 T 14-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Pfam PF00013 KH domain 612 669 2.1E-11 T 14-09-2016 IPR004088 K Homology domain, type 1 GO:0003723 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Gene3D G3DSA:2.40.50.140 681 746 1.6E-18 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Gene3D G3DSA:3.30.1370.10 607 680 1.2E-22 T 14-09-2016 IPR004088 K Homology domain, type 1 GO:0003723 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 SUPERFAMILY SSF46915 286 373 1.02E-14 T 14-09-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 SUPERFAMILY SSF54211 20 160 2.02E-46 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 PANTHER PTHR11252:SF0 25 746 0.0 T 14-09-2016 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Pfam PF01138 3' exoribonuclease family, domain 1 29 160 1.3E-17 T 14-09-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Pfam PF01138 3' exoribonuclease family, domain 1 377 509 6.5E-18 T 14-09-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 SUPERFAMILY SSF55666 162 282 3.34E-20 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 SUPERFAMILY SSF54211 352 521 6.58E-43 T 14-09-2016 IPR020568 Ribosomal protein S5 domain 2-type fold ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Gene3D G3DSA:1.10.10.400 272 367 3.9E-22 T 14-09-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 SMART SM00322 608 673 2.2E-14 T 14-09-2016 IPR004087 K Homology domain GO:0003676 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 TIGRFAM TIGR02696 pppGpp_PNP: guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase 15 748 0.0 T 14-09-2016 IPR014069 Guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase GO:0004654|GO:0005737|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 PANTHER PTHR11252 25 746 0.0 T 14-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 PIRSF PIRSF005499 16 752 5.2E-278 T 14-09-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 289 372 1.7E-13 T 14-09-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 SMART SM00316 678 749 1.8E-15 T 14-09-2016 IPR022967 RNA-binding domain, S1 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 SUPERFAMILY SSF55666 503 602 1.14E-23 T 14-09-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 SUPERFAMILY SSF54791 610 697 5.06E-18 T 14-09-2016 IPR004088 K Homology domain, type 1 GO:0003723 ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Gene3D G3DSA:3.30.230.70 368 599 6.1E-82 T 14-09-2016 IPR027408 PNPase/RNase PH domain ccrud_RS08575 a21a5ab2e7ea0749b16316c4f50d9e49 753 Gene3D G3DSA:3.30.230.70 19 270 6.0E-80 T 14-09-2016 IPR027408 PNPase/RNase PH domain ccrud_RS04660 6aa55392aa48233e2a4ca408f604b1f1 210 PANTHER PTHR34070:SF1 2 209 5.8E-45 T 14-09-2016 ccrud_RS04660 6aa55392aa48233e2a4ca408f604b1f1 210 SUPERFAMILY SSF48371 14 208 3.45E-46 T 14-09-2016 IPR016024 Armadillo-type fold GO:0005488 ccrud_RS04660 6aa55392aa48233e2a4ca408f604b1f1 210 PANTHER PTHR34070 2 209 5.8E-45 T 14-09-2016 ccrud_RS04660 6aa55392aa48233e2a4ca408f604b1f1 210 Gene3D G3DSA:1.25.40.290 118 208 1.9E-37 T 14-09-2016 ccrud_RS04660 6aa55392aa48233e2a4ca408f604b1f1 210 Pfam PF08713 DNA alkylation repair enzyme 11 208 4.3E-58 T 14-09-2016 IPR014825 DNA alkylation repair enzyme ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 Hamap MF_00822 Urease accessory protein UreE [ureE]. 1 157 19.223 T 14-09-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 PIRSF PIRSF036402 1 157 5.6E-43 T 14-09-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 SMART SM00988 6 73 1.1E-9 T 14-09-2016 IPR004029 UreE urease accessory, N-terminal ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 SUPERFAMILY SSF69737 78 150 2.62E-15 T 14-09-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 PANTHER PTHR33620:SF2 65 157 2.9E-12 T 14-09-2016 ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 Pfam PF05194 UreE urease accessory protein, C-terminal domain 80 137 6.5E-5 T 14-09-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 PANTHER PTHR33620 65 157 2.9E-12 T 14-09-2016 ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 SUPERFAMILY SSF69287 1 76 1.26E-12 T 14-09-2016 IPR004029 UreE urease accessory, N-terminal ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 Gene3D G3DSA:3.30.70.790 78 157 1.2E-20 T 14-09-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 Pfam PF02814 UreE urease accessory protein, N-terminal domain 32 71 3.9E-10 T 14-09-2016 IPR004029 UreE urease accessory, N-terminal ccrud_RS00505 c413bbd3df0fdee20fb159d9df18d1a6 157 Gene3D G3DSA:2.60.260.20 1 76 2.9E-16 T 14-09-2016 ccrud_RS13235 9f800f6c776d363b8d3bb42c90b07551 313 TIGRFAM TIGR01076 sortase_fam: sortase 120 247 4.1E-41 T 14-09-2016 IPR005754 Sortase family ccrud_RS13235 9f800f6c776d363b8d3bb42c90b07551 313 Pfam PF04203 Sortase family 121 245 2.1E-23 T 14-09-2016 IPR005754 Sortase family ccrud_RS13235 9f800f6c776d363b8d3bb42c90b07551 313 Gene3D G3DSA:2.40.260.10 111 247 3.1E-40 T 14-09-2016 IPR023365 Sortase domain ccrud_RS13235 9f800f6c776d363b8d3bb42c90b07551 313 SUPERFAMILY SSF63817 109 246 6.28E-39 T 14-09-2016 IPR023365 Sortase domain ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 SMART SM00487 27 232 5.2E-52 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 PANTHER PTHR24031:SF261 9 375 7.3E-154 T 14-09-2016 ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 Pfam PF00271 Helicase conserved C-terminal domain 243 349 7.7E-31 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 Pfam PF00270 DEAD/DEAH box helicase 33 198 4.6E-45 T 14-09-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 Gene3D G3DSA:3.40.50.300 5 227 2.5E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 PANTHER PTHR24031 9 375 7.3E-154 T 14-09-2016 ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 161 169 - T 14-09-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 SMART SM00490 268 349 4.7E-34 T 14-09-2016 IPR001650 Helicase, C-terminal ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 SUPERFAMILY SSF52540 83 363 4.53E-75 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03755 fcd57def77eba9060210f019bf3099f3 424 Gene3D G3DSA:3.40.50.300 228 373 3.3E-49 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08705 eda462ffb477d96757ea70d9b40fd007 500 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 15 495 3.3E-260 T 14-09-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 ccrud_RS08705 eda462ffb477d96757ea70d9b40fd007 500 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 11 497 52.094 T 14-09-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 ccrud_RS08705 eda462ffb477d96757ea70d9b40fd007 500 Gene3D G3DSA:3.50.50.60 13 105 1.2E-21 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08705 eda462ffb477d96757ea70d9b40fd007 500 Gene3D G3DSA:3.50.50.60 155 334 1.2E-21 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08705 eda462ffb477d96757ea70d9b40fd007 500 SUPERFAMILY SSF51905 12 74 2.91E-24 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08705 eda462ffb477d96757ea70d9b40fd007 500 SUPERFAMILY SSF51905 143 337 2.91E-24 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS08705 eda462ffb477d96757ea70d9b40fd007 500 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 14 497 1.3E-219 T 14-09-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 ccrud_RS08705 eda462ffb477d96757ea70d9b40fd007 500 PANTHER PTHR13847 13 406 1.2E-173 T 14-09-2016 ccrud_RS08705 eda462ffb477d96757ea70d9b40fd007 500 PANTHER PTHR13847:SF214 13 406 1.2E-173 T 14-09-2016 ccrud_RS11150 9a978e31686ad8106f1f66f9db8fc1bc 318 Gene3D G3DSA:3.40.50.2300 123 285 3.2E-51 T 14-09-2016 ccrud_RS11150 9a978e31686ad8106f1f66f9db8fc1bc 318 PANTHER PTHR30146 166 314 1.0E-55 T 14-09-2016 ccrud_RS11150 9a978e31686ad8106f1f66f9db8fc1bc 318 PANTHER PTHR30146 8 135 1.0E-55 T 14-09-2016 ccrud_RS11150 9a978e31686ad8106f1f66f9db8fc1bc 318 PANTHER PTHR30146:SF4 8 135 1.0E-55 T 14-09-2016 ccrud_RS11150 9a978e31686ad8106f1f66f9db8fc1bc 318 PANTHER PTHR30146:SF4 166 314 1.0E-55 T 14-09-2016 ccrud_RS11150 9a978e31686ad8106f1f66f9db8fc1bc 318 SUPERFAMILY SSF53822 191 307 3.37E-50 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS11150 9a978e31686ad8106f1f66f9db8fc1bc 318 SUPERFAMILY SSF53822 14 160 3.37E-50 T 14-09-2016 IPR028082 Periplasmic binding protein-like I ccrud_RS11150 9a978e31686ad8106f1f66f9db8fc1bc 318 Pfam PF13377 Periplasmic binding protein-like domain 117 307 1.5E-28 T 14-09-2016 ccrud_RS11150 9a978e31686ad8106f1f66f9db8fc1bc 318 Gene3D G3DSA:3.40.50.2300 7 122 2.1E-33 T 14-09-2016 ccrud_RS09775 15a7a2f9c78f40cdfc03f8f0985b9fd7 306 Gene3D G3DSA:3.20.20.30 18 306 2.0E-59 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS09775 15a7a2f9c78f40cdfc03f8f0985b9fd7 306 PANTHER PTHR30011 1 303 4.9E-47 T 14-09-2016 ccrud_RS09775 15a7a2f9c78f40cdfc03f8f0985b9fd7 306 Pfam PF00296 Luciferase-like monooxygenase 21 230 2.7E-39 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS09775 15a7a2f9c78f40cdfc03f8f0985b9fd7 306 PANTHER PTHR30011:SF14 1 303 4.9E-47 T 14-09-2016 ccrud_RS09775 15a7a2f9c78f40cdfc03f8f0985b9fd7 306 TIGRFAM TIGR03571 lucif_BA3436: luciferase-type oxidoreductase, BA3436 family 16 306 5.6E-100 T 14-09-2016 IPR020020 Luciferase-type oxidoreductase ccrud_RS09775 15a7a2f9c78f40cdfc03f8f0985b9fd7 306 SUPERFAMILY SSF51679 21 304 1.16E-53 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS09940 2c4338ca723e7c2ecbbd5d62b12b36cf 276 PANTHER PTHR19288:SF40 6 263 1.1E-124 T 14-09-2016 ccrud_RS09940 2c4338ca723e7c2ecbbd5d62b12b36cf 276 Pfam PF13344 Haloacid dehalogenase-like hydrolase 8 106 3.7E-25 T 14-09-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA ccrud_RS09940 2c4338ca723e7c2ecbbd5d62b12b36cf 276 Gene3D G3DSA:3.40.50.1000 7 80 1.3E-39 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS09940 2c4338ca723e7c2ecbbd5d62b12b36cf 276 Gene3D G3DSA:3.40.50.1000 178 255 1.3E-39 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS09940 2c4338ca723e7c2ecbbd5d62b12b36cf 276 SUPERFAMILY SSF56784 7 253 1.87E-66 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS09940 2c4338ca723e7c2ecbbd5d62b12b36cf 276 TIGRFAM TIGR01460 HAD-SF-IIA: HAD hydrolase, family IIA 8 228 1.5E-44 T 14-09-2016 IPR006357 HAD-superfamily hydrolase, subfamily IIA ccrud_RS09940 2c4338ca723e7c2ecbbd5d62b12b36cf 276 Pfam PF13242 HAD-hyrolase-like 179 252 1.9E-23 T 14-09-2016 ccrud_RS09940 2c4338ca723e7c2ecbbd5d62b12b36cf 276 PANTHER PTHR19288 6 263 1.1E-124 T 14-09-2016 ccrud_RS09940 2c4338ca723e7c2ecbbd5d62b12b36cf 276 Gene3D G3DSA:3.40.50.10410 86 177 2.0E-31 T 14-09-2016 IPR023215 Nitrophenylphosphatase-like domain ccrud_RS02825 d64456e1abb5fffdc6706352bd78a636 272 Pfam PF01614 Bacterial transcriptional regulator 129 245 2.8E-24 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal ccrud_RS02825 d64456e1abb5fffdc6706352bd78a636 272 SMART SM00346 12 97 8.6E-18 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS02825 d64456e1abb5fffdc6706352bd78a636 272 Pfam PF09339 IclR helix-turn-helix domain 14 61 8.2E-13 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS02825 d64456e1abb5fffdc6706352bd78a636 272 SUPERFAMILY SSF46785 14 80 1.14E-14 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS02825 d64456e1abb5fffdc6706352bd78a636 272 Gene3D G3DSA:1.10.10.10 11 72 3.2E-18 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS02825 d64456e1abb5fffdc6706352bd78a636 272 Gene3D G3DSA:3.30.450.40 82 247 1.3E-42 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS02825 d64456e1abb5fffdc6706352bd78a636 272 SUPERFAMILY SSF55781 67 245 2.88E-40 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS02825 d64456e1abb5fffdc6706352bd78a636 272 PANTHER PTHR30136 12 259 1.0E-51 T 14-09-2016 ccrud_RS11095 06ffc090f64cffa47bea8b74360acd02 250 PANTHER PTHR12110:SF22 3 249 7.4E-82 T 14-09-2016 ccrud_RS11095 06ffc090f64cffa47bea8b74360acd02 250 SUPERFAMILY SSF51658 1 248 8.38E-65 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11095 06ffc090f64cffa47bea8b74360acd02 250 Pfam PF01261 Xylose isomerase-like TIM barrel 21 213 4.2E-22 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11095 06ffc090f64cffa47bea8b74360acd02 250 PIRSF PIRSF006241 1 250 2.0E-82 T 14-09-2016 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 ccrud_RS11095 06ffc090f64cffa47bea8b74360acd02 250 PANTHER PTHR12110 3 249 7.4E-82 T 14-09-2016 ccrud_RS11095 06ffc090f64cffa47bea8b74360acd02 250 Gene3D G3DSA:3.20.20.150 2 248 2.0E-67 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS07455 b8db064f06a59164c9a2380090efcf3c 258 Pfam PF09335 SNARE associated Golgi protein 104 221 6.0E-23 T 14-09-2016 IPR032816 SNARE associated Golgi protein ccrud_RS07455 b8db064f06a59164c9a2380090efcf3c 258 PANTHER PTHR12677 46 221 1.9E-25 T 14-09-2016 IPR015414 Transmembrane protein TMEM64/TMEM41 GO:0016021 ccrud_RS07455 b8db064f06a59164c9a2380090efcf3c 258 PANTHER PTHR12677:SF5 46 221 1.9E-25 T 14-09-2016 ccrud_RS13785 89201ee535983a8bb54922254f73913c 187 Gene3D G3DSA:1.10.357.10 3 129 6.4E-25 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS13785 89201ee535983a8bb54922254f73913c 187 SUPERFAMILY SSF46689 4 78 2.14E-18 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS13785 89201ee535983a8bb54922254f73913c 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 15 28 1.2E-9 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS13785 89201ee535983a8bb54922254f73913c 187 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 36 59 1.2E-9 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS13785 89201ee535983a8bb54922254f73913c 187 PANTHER PTHR30055 1 129 2.1E-18 T 14-09-2016 ccrud_RS13785 89201ee535983a8bb54922254f73913c 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 58 8.0E-15 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 Gene3D G3DSA:3.30.70.1450 289 351 2.9E-4 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 SUPERFAMILY SSF116726 272 351 9.81E-8 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 16 165 1.1E-38 T 14-09-2016 IPR006512 YidE/YbjL duplication ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 369 522 4.6E-52 T 14-09-2016 IPR006512 YidE/YbjL duplication ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 PANTHER PTHR30445 1 539 2.3E-153 T 14-09-2016 ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 PANTHER PTHR30445:SF1 1 539 2.3E-153 T 14-09-2016 ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 Pfam PF02080 TrkA-C domain 287 351 5.2E-8 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 Gene3D G3DSA:3.30.70.1450 224 269 3.8E-4 T 14-09-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 Pfam PF06826 Predicted Permease Membrane Region 11 177 1.4E-41 T 14-09-2016 IPR006512 YidE/YbjL duplication ccrud_RS09740 07185f3f446fcd0136ea2c819f6ba17b 539 Pfam PF06826 Predicted Permease Membrane Region 365 534 8.0E-41 T 14-09-2016 IPR006512 YidE/YbjL duplication ccrud_RS12740 51d1145feb132d4b062060d8b7c2fec2 531 Gene3D G3DSA:1.20.950.20 296 490 2.8E-14 T 14-09-2016 ccrud_RS12740 51d1145feb132d4b062060d8b7c2fec2 531 SUPERFAMILY SSF81342 294 496 1.1E-19 T 14-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 ccrud_RS12740 51d1145feb132d4b062060d8b7c2fec2 531 Pfam PF01292 Prokaryotic cytochrome b561 296 481 1.8E-9 T 14-09-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 Gene3D G3DSA:3.40.50.300 756 904 9.2E-8 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 Gene3D G3DSA:3.40.50.300 388 622 2.4E-23 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 Gene3D G3DSA:3.40.50.300 982 1049 4.1E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 SMART SM00382 757 906 3.3E-5 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 SMART SM00382 1001 1167 4.0 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 SMART SM00382 433 608 0.64 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 PANTHER PTHR22683:SF1 1110 1200 1.0E-144 T 14-09-2016 ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 TIGRFAM TIGR03925 T7SS_EccC_b: type VII secretion protein EccCb 691 1200 6.7E-180 T 14-09-2016 IPR023837 EccCb-like, Actinobacteria ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 PANTHER PTHR22683:SF1 821 1063 1.0E-144 T 14-09-2016 ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 PANTHER PTHR22683:SF1 30 654 1.0E-144 T 14-09-2016 ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 TIGRFAM TIGR03924 T7SS_EccC_a: type VII secretion protein EccCa 275 652 2.4E-165 T 14-09-2016 IPR023836 EccCa-like, Actinobacteria ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 SUPERFAMILY SSF52540 961 1135 4.48E-9 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 SUPERFAMILY SSF52540 398 618 1.09E-21 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 PANTHER PTHR22683 30 654 1.0E-144 T 14-09-2016 ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 Pfam PF01580 FtsK/SpoIIIE family 399 533 1.4E-26 T 14-09-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 Pfam PF01580 FtsK/SpoIIIE family 737 939 4.8E-28 T 14-09-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 SUPERFAMILY SSF52540 709 905 3.52E-18 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 PANTHER PTHR22683 821 1063 1.0E-144 T 14-09-2016 ccrud_RS02940 2f9b9bdb3c39d571fa78dc49c5ac88d7 1206 PANTHER PTHR22683 1110 1200 1.0E-144 T 14-09-2016 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00385 P450 superfamily signature 268 285 2.6E-5 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00385 P450 superfamily signature 370 379 2.6E-5 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00385 P450 superfamily signature 303 314 2.6E-5 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00385 P450 superfamily signature 379 390 2.6E-5 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 Pfam PF00067 Cytochrome P450 219 395 7.0E-25 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 Gene3D G3DSA:1.10.630.10 25 430 1.7E-101 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PANTHER PTHR11712 34 431 3.7E-78 T 14-09-2016 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 SUPERFAMILY SSF48264 17 429 1.11E-83 T 14-09-2016 IPR001128 Cytochrome P450 GO:0005506|GO:0016705|GO:0020037|GO:0055114 Reactome: REACT_13433 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00359 B-class P450 signature 379 390 7.1E-35 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00359 B-class P450 signature 114 125 7.1E-35 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00359 B-class P450 signature 162 178 7.1E-35 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00359 B-class P450 signature 348 363 7.1E-35 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00359 B-class P450 signature 320 347 7.1E-35 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00359 B-class P450 signature 222 244 7.1E-35 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00359 B-class P450 signature 303 314 7.1E-35 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 PRINTS PR00359 B-class P450 signature 370 379 7.1E-35 T 14-09-2016 IPR002397 Cytochrome P450, B-class GO:0005506|GO:0020037|GO:0055114 ccrud_RS02820 dbbafd9ab5be32a7d256ab9c62d61e14 431 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 372 381 - T 14-09-2016 IPR017972 Cytochrome P450, conserved site GO:0016705|GO:0055114 Reactome: REACT_13433 ccrud_RS03740 1f3f7d10f78b6fd132af632703b00826 86 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 1 80 14.183 T 14-09-2016 IPR003482 Transcription factor WhiB ccrud_RS03740 1f3f7d10f78b6fd132af632703b00826 86 PANTHER PTHR38839 1 84 9.9E-43 T 14-09-2016 ccrud_RS03740 1f3f7d10f78b6fd132af632703b00826 86 Pfam PF02467 Transcription factor WhiB 3 71 5.0E-27 T 14-09-2016 IPR003482 Transcription factor WhiB ccrud_RS03740 1f3f7d10f78b6fd132af632703b00826 86 PANTHER PTHR38839:SF3 1 84 9.9E-43 T 14-09-2016 ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 Pfam PF01145 SPFH domain / Band 7 family 25 194 3.0E-31 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 ProSitePatterns PS01270 Band 7 protein family signature. 134 162 - T 14-09-2016 IPR018080 Band 7/stomatin-like, conserved site ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 SMART SM00244 20 178 2.2E-47 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 SUPERFAMILY SSF117892 51 185 9.15E-38 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 PANTHER PTHR10264:SF27 1 343 5.2E-106 T 14-09-2016 ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 PANTHER PTHR10264 1 343 5.2E-106 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 PRINTS PR00721 Stomatin signature 154 172 4.4E-28 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 PRINTS PR00721 Stomatin signature 110 127 4.4E-28 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 PRINTS PR00721 Stomatin signature 27 49 4.4E-28 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 PRINTS PR00721 Stomatin signature 130 153 4.4E-28 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 PRINTS PR00721 Stomatin signature 173 194 4.4E-28 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS07465 a57a9a24cfde0387eeee65e2df6429c2 424 PRINTS PR00721 Stomatin signature 75 96 4.4E-28 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS03630 55d0286266bba5b4e3c2069895ed834c 132 Pfam PF12005 Protein of unknown function (DUF3499) 5 126 1.4E-45 T 14-09-2016 IPR021888 Protein of unknown function DUF3499 ccrud_RS00490 2905b69fc864906825d05b5fc793e864 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 33.755 T 14-09-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00490 2905b69fc864906825d05b5fc793e864 100 Gene3D G3DSA:3.30.280.10 2 100 4.6E-47 T 14-09-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00490 2905b69fc864906825d05b5fc793e864 100 Pfam PF00547 Urease, gamma subunit 2 99 7.3E-45 T 14-09-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00490 2905b69fc864906825d05b5fc793e864 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 2 100 2.2E-45 T 14-09-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00490 2905b69fc864906825d05b5fc793e864 100 PIRSF PIRSF001223 1 100 2.5E-49 T 14-09-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00490 2905b69fc864906825d05b5fc793e864 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 9 99 6.0E-45 T 14-09-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS00490 2905b69fc864906825d05b5fc793e864 100 PANTHER PTHR33569 2 100 4.5E-46 T 14-09-2016 ccrud_RS00490 2905b69fc864906825d05b5fc793e864 100 PANTHER PTHR33569:SF1 2 100 4.5E-46 T 14-09-2016 ccrud_RS00490 2905b69fc864906825d05b5fc793e864 100 SUPERFAMILY SSF54111 2 100 6.8E-45 T 14-09-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 ccrud_RS05225 bd14eba5da2c5bc921a543bc9b2040ab 234 Gene3D G3DSA:3.40.50.10320 12 215 8.6E-40 T 14-09-2016 IPR024078 Putative deacetylase LmbE-like domain ccrud_RS05225 bd14eba5da2c5bc921a543bc9b2040ab 234 PANTHER PTHR12993:SF11 8 162 2.0E-25 T 14-09-2016 ccrud_RS05225 bd14eba5da2c5bc921a543bc9b2040ab 234 SUPERFAMILY SSF102588 12 202 3.14E-39 T 14-09-2016 IPR024078 Putative deacetylase LmbE-like domain ccrud_RS05225 bd14eba5da2c5bc921a543bc9b2040ab 234 Pfam PF02585 GlcNAc-PI de-N-acetylase 16 143 9.1E-23 T 14-09-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related ccrud_RS05225 bd14eba5da2c5bc921a543bc9b2040ab 234 PANTHER PTHR12993 8 162 2.0E-25 T 14-09-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related ccrud_RS05265 a96579c52a671cdbda7e64207cc1b416 138 ProSitePatterns PS00893 Nudix box signature. 44 65 - T 14-09-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 ccrud_RS05265 a96579c52a671cdbda7e64207cc1b416 138 PANTHER PTHR22769 14 135 1.1E-21 T 14-09-2016 ccrud_RS05265 a96579c52a671cdbda7e64207cc1b416 138 Pfam PF00293 NUDIX domain 16 136 9.7E-14 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS05265 a96579c52a671cdbda7e64207cc1b416 138 Gene3D G3DSA:3.90.79.10 10 124 2.1E-17 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS05265 a96579c52a671cdbda7e64207cc1b416 138 PANTHER PTHR22769:SF5 14 135 1.1E-21 T 14-09-2016 ccrud_RS05265 a96579c52a671cdbda7e64207cc1b416 138 SUPERFAMILY SSF55811 14 130 9.48E-19 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS10560 50e309d138df979b6bfe4d477d462860 141 Pfam PF14017 Protein of unknown function (DUF4233) 28 133 4.2E-25 T 14-09-2016 IPR025327 Protein of unknown function DUF4233 ccrud_RS08400 ac067c4ee5893c8ac5335b05192ed5de 302 Gene3D G3DSA:3.40.50.300 5 169 1.5E-50 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08400 ac067c4ee5893c8ac5335b05192ed5de 302 Pfam PF01715 IPP transferase 37 281 5.7E-70 T 14-09-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 ccrud_RS08400 ac067c4ee5893c8ac5335b05192ed5de 302 Gene3D G3DSA:1.10.287.890 198 279 1.8E-23 T 14-09-2016 ccrud_RS08400 ac067c4ee5893c8ac5335b05192ed5de 302 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 4 297 25.602 T 14-09-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 ccrud_RS08400 ac067c4ee5893c8ac5335b05192ed5de 302 SUPERFAMILY SSF52540 5 151 1.65E-17 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08400 ac067c4ee5893c8ac5335b05192ed5de 302 PANTHER PTHR11088 5 288 1.4E-88 T 14-09-2016 ccrud_RS08400 ac067c4ee5893c8ac5335b05192ed5de 302 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 5 288 8.0E-78 T 14-09-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 ccrud_RS12805 c49be13f0a501e39b3bfd73cf2078629 386 Gene3D G3DSA:2.40.30.10 168 261 2.3E-13 T 14-09-2016 ccrud_RS12805 c49be13f0a501e39b3bfd73cf2078629 386 PANTHER PTHR22924 14 381 1.8E-58 T 14-09-2016 ccrud_RS12805 c49be13f0a501e39b3bfd73cf2078629 386 PANTHER PTHR22924:SF49 14 381 1.8E-58 T 14-09-2016 ccrud_RS12805 c49be13f0a501e39b3bfd73cf2078629 386 Gene3D G3DSA:1.10.490.10 14 158 5.0E-43 T 14-09-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 ccrud_RS12805 c49be13f0a501e39b3bfd73cf2078629 386 SUPERFAMILY SSF52343 264 382 6.81E-18 T 14-09-2016 ccrud_RS12805 c49be13f0a501e39b3bfd73cf2078629 386 SUPERFAMILY SSF46458 10 150 9.98E-32 T 14-09-2016 IPR009050 Globin-like ccrud_RS12805 c49be13f0a501e39b3bfd73cf2078629 386 Gene3D G3DSA:3.40.50.80 265 382 2.0E-13 T 14-09-2016 ccrud_RS12805 c49be13f0a501e39b3bfd73cf2078629 386 SUPERFAMILY SSF63380 168 261 2.43E-11 T 14-09-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 ccrud_RS12805 c49be13f0a501e39b3bfd73cf2078629 386 Pfam PF00042 Globin 20 117 9.5E-7 T 14-09-2016 IPR000971 Globin GO:0019825|GO:0020037 ccrud_RS03760 e3e16b4196afe40f5e7fd4a56a0be4dc 75 Pfam PF11305 Protein of unknown function (DUF3107) 1 73 7.8E-31 T 14-09-2016 IPR021456 Protein of unknown function DUF3107 ccrud_RS04115 7159ceedad35a20f3130b6fceb31a935 280 Gene3D G3DSA:3.20.20.80 48 236 1.5E-14 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS04115 7159ceedad35a20f3130b6fceb31a935 280 SUPERFAMILY SSF51445 32 233 2.53E-14 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS04115 7159ceedad35a20f3130b6fceb31a935 280 Pfam PF08924 Domain of unknown function (DUF1906) 47 176 2.0E-32 T 14-09-2016 IPR015020 Protein of unknown function DUF1906 ccrud_RS04115 7159ceedad35a20f3130b6fceb31a935 280 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 30 0.0014 T 14-09-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal ccrud_RS13670 118707eec5b057ed7962b44431a6bce7 711 Gene3D G3DSA:3.60.21.10 61 267 3.8E-13 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS13670 118707eec5b057ed7962b44431a6bce7 711 Pfam PF13385 Concanavalin A-like lectin/glucanases superfamily 487 644 2.0E-10 T 14-09-2016 ccrud_RS13670 118707eec5b057ed7962b44431a6bce7 711 SUPERFAMILY SSF56300 35 260 1.48E-21 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS13670 118707eec5b057ed7962b44431a6bce7 711 Gene3D G3DSA:2.60.120.200 484 648 7.8E-16 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain ccrud_RS13670 118707eec5b057ed7962b44431a6bce7 711 Pfam PF00149 Calcineurin-like phosphoesterase 37 250 1.7E-5 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 ccrud_RS13670 118707eec5b057ed7962b44431a6bce7 711 SUPERFAMILY SSF49899 490 645 9.85E-12 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain ccrud_RS05900 e605c4a63dbd7b5ad19a705352fff485 266 PANTHER PTHR12318 10 249 6.4E-28 T 14-09-2016 ccrud_RS05900 e605c4a63dbd7b5ad19a705352fff485 266 PANTHER PTHR12318:SF0 10 249 6.4E-28 T 14-09-2016 ccrud_RS05900 e605c4a63dbd7b5ad19a705352fff485 266 Gene3D G3DSA:3.90.79.10 148 201 1.2E-9 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS05900 e605c4a63dbd7b5ad19a705352fff485 266 Gene3D G3DSA:3.90.79.10 9 104 1.2E-9 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS05900 e605c4a63dbd7b5ad19a705352fff485 266 SUPERFAMILY SSF55811 93 104 5.38E-9 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS05900 e605c4a63dbd7b5ad19a705352fff485 266 SUPERFAMILY SSF55811 6 62 5.38E-9 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS05900 e605c4a63dbd7b5ad19a705352fff485 266 SUPERFAMILY SSF55811 148 220 5.38E-9 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 Gene3D G3DSA:3.40.1390.30 243 329 2.1E-33 T 14-09-2016 ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 Gene3D G3DSA:3.40.1390.30 117 132 2.1E-33 T 14-09-2016 ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 Gene3D G3DSA:3.40.1390.30 4 116 9.3E-44 T 14-09-2016 ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 PANTHER PTHR13799 8 136 3.6E-98 T 14-09-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 PANTHER PTHR13799 159 375 3.6E-98 T 14-09-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 Gene3D G3DSA:3.30.70.830 136 237 1.8E-34 T 14-09-2016 ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 6 370 6.0E-51 T 14-09-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 SUPERFAMILY SSF102705 5 373 1.7E-110 T 14-09-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 PIRSF PIRSF037489 2 375 3.6E-147 T 14-09-2016 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria ccrud_RS09870 9c06857ae5e6a8fdceee80502b629c7b 386 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 8 358 5.2E-74 T 14-09-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 Gene3D G3DSA:2.30.30.30 245 306 8.5E-25 T 14-09-2016 IPR014722 Ribosomal protein L2 domain 2 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 ProSitePatterns PS01014 Transcription termination factor nusG signature. 289 298 - T 14-09-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 110 306 22.096 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 SUPERFAMILY SSF50104 251 306 6.42E-14 T 14-09-2016 IPR008991 Translation protein SH3-like domain ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 PANTHER PTHR30265 20 306 2.5E-62 T 14-09-2016 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 Pfam PF02357 Transcription termination factor nusG 112 215 1.2E-27 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 SUPERFAMILY SSF82679 112 217 3.4E-35 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 SMART SM00739 252 279 0.0057 T 14-09-2016 IPR005824 KOW ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 PRINTS PR00338 Transcription termination factor NUSG signature 165 177 6.6E-16 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 PRINTS PR00338 Transcription termination factor NUSG signature 264 279 6.6E-16 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 PRINTS PR00338 Transcription termination factor NUSG signature 282 298 6.6E-16 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 Gene3D G3DSA:3.30.70.940 112 219 2.7E-41 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 113 306 6.0E-57 T 14-09-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 ccrud_RS02495 843fd9704550a3dc3b233a41fcabee39 307 SMART SM00738 110 218 9.6E-48 T 14-09-2016 IPR006645 NusG, N-terminal GO:0006355 ccrud_RS03140 91779ef7df12b8f2f1693e2e28c31e73 287 Pfam PF01040 UbiA prenyltransferase family 23 269 1.1E-35 T 14-09-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 ccrud_RS01035 b395c03863653f48302c337839df7cae 296 SUPERFAMILY SSF159941 30 135 1.83E-8 T 14-09-2016 IPR024047 Protein MM3350-like domain ccrud_RS10995 be4c05423eaa4d33efc6a5f2aaf8aab7 367 Pfam PF00005 ABC transporter 21 163 8.1E-35 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS10995 be4c05423eaa4d33efc6a5f2aaf8aab7 367 PANTHER PTHR24220 7 302 5.4E-114 T 14-09-2016 ccrud_RS10995 be4c05423eaa4d33efc6a5f2aaf8aab7 367 SMART SM00382 30 213 8.2E-16 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS10995 be4c05423eaa4d33efc6a5f2aaf8aab7 367 SUPERFAMILY SSF52540 6 246 7.78E-84 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10995 be4c05423eaa4d33efc6a5f2aaf8aab7 367 PANTHER PTHR24220:SF123 7 302 5.4E-114 T 14-09-2016 ccrud_RS10995 be4c05423eaa4d33efc6a5f2aaf8aab7 367 Gene3D G3DSA:3.40.50.300 2 235 2.5E-81 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10995 be4c05423eaa4d33efc6a5f2aaf8aab7 367 SUPERFAMILY SSF50331 240 343 4.25E-5 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal ccrud_RS10995 be4c05423eaa4d33efc6a5f2aaf8aab7 367 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS04280 5b97da3b68147a212742f8118a76aaae 101 SUPERFAMILY SSF57716 2 101 1.14E-34 T 14-09-2016 ccrud_RS04280 5b97da3b68147a212742f8118a76aaae 101 PANTHER PTHR19836:SF21 1 101 9.4E-58 T 14-09-2016 ccrud_RS04280 5b97da3b68147a212742f8118a76aaae 101 PANTHER PTHR19836 1 101 9.4E-58 T 14-09-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04280 5b97da3b68147a212742f8118a76aaae 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 4.6E-23 T 14-09-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04280 5b97da3b68147a212742f8118a76aaae 101 Gene3D G3DSA:4.10.830.10 41 101 1.2E-27 T 14-09-2016 ccrud_RS04280 5b97da3b68147a212742f8118a76aaae 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 26.55 T 14-09-2016 IPR023036 Ribosomal protein S14, bacterial/plastid ccrud_RS03575 17e72fec657433c02739605b680ff5c7 151 SUPERFAMILY SSF55961 21 139 1.86E-17 T 14-09-2016 ccrud_RS03575 17e72fec657433c02739605b680ff5c7 151 Gene3D G3DSA:3.30.530.20 19 140 9.3E-18 T 14-09-2016 IPR023393 START-like domain ccrud_RS03575 17e72fec657433c02739605b680ff5c7 151 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 20 139 3.5E-9 T 14-09-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 ccrud_RS09020 80ad399d37bf259659b98a7b22fec734 592 SUPERFAMILY SSF53474 110 180 7.87E-10 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS09020 80ad399d37bf259659b98a7b22fec734 592 Gene3D G3DSA:3.40.50.1820 117 197 9.1E-9 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS09020 80ad399d37bf259659b98a7b22fec734 592 Gene3D G3DSA:3.40.50.1820 4 50 9.1E-9 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS04920 4ad415725fdcf8bc36f969bafc80fece 176 PANTHER PTHR23091 5 145 3.8E-16 T 14-09-2016 ccrud_RS04920 4ad415725fdcf8bc36f969bafc80fece 176 Gene3D G3DSA:3.40.630.30 5 170 6.7E-30 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS04920 4ad415725fdcf8bc36f969bafc80fece 176 Pfam PF00583 Acetyltransferase (GNAT) family 65 139 1.6E-9 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS04920 4ad415725fdcf8bc36f969bafc80fece 176 SUPERFAMILY SSF55729 4 170 1.92E-26 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS04645 fe3c9cd9689cca9fac7f861064da2fd6 176 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 5 176 29.862 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04645 fe3c9cd9689cca9fac7f861064da2fd6 176 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 18 31 - T 14-09-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 ccrud_RS04645 fe3c9cd9689cca9fac7f861064da2fd6 176 Pfam PF01195 Peptidyl-tRNA hydrolase 7 174 9.9E-52 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04645 fe3c9cd9689cca9fac7f861064da2fd6 176 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 108 118 - T 14-09-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 ccrud_RS04645 fe3c9cd9689cca9fac7f861064da2fd6 176 Gene3D G3DSA:3.40.50.1470 3 175 2.1E-62 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04645 fe3c9cd9689cca9fac7f861064da2fd6 176 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 6 171 6.6E-51 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04645 fe3c9cd9689cca9fac7f861064da2fd6 176 SUPERFAMILY SSF53178 6 174 1.09E-57 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS04645 fe3c9cd9689cca9fac7f861064da2fd6 176 PANTHER PTHR17224 5 175 1.2E-67 T 14-09-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 ccrud_RS13190 ccaca01b2dedaaaba69e6d469bed3420 114 SUPERFAMILY SSF55486 5 108 4.26E-37 T 14-09-2016 ccrud_RS13190 ccaca01b2dedaaaba69e6d469bed3420 114 PANTHER PTHR41522 1 113 4.3E-28 T 14-09-2016 ccrud_RS13190 ccaca01b2dedaaaba69e6d469bed3420 114 Pfam PF06262 Zinicin-like metallopeptidase 28 112 3.4E-27 T 14-09-2016 IPR010428 Zinicin-like metallopeptidase ccrud_RS13190 ccaca01b2dedaaaba69e6d469bed3420 114 Gene3D G3DSA:3.40.390.10 76 106 6.7E-4 T 14-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 ccrud_RS08760 cee28de73e473128db210fd6eb7b844d 237 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS08760 cee28de73e473128db210fd6eb7b844d 237 SMART SM00382 31 226 1.7E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS08760 cee28de73e473128db210fd6eb7b844d 237 Pfam PF00005 ABC transporter 22 178 4.9E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS08760 cee28de73e473128db210fd6eb7b844d 237 Gene3D G3DSA:3.40.50.300 3 230 1.0E-58 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08760 cee28de73e473128db210fd6eb7b844d 237 SUPERFAMILY SSF52540 3 230 9.08E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08760 cee28de73e473128db210fd6eb7b844d 237 PANTHER PTHR24220 4 230 1.4E-68 T 14-09-2016 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 211 230 6.7E-7 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 278 293 6.7E-7 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 125 139 6.7E-7 T 14-09-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 187 293 8.9E-24 T 14-09-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 Gene3D G3DSA:3.40.120.10 5 191 1.0E-45 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 PANTHER PTHR22573 4 43 3.8E-131 T 14-09-2016 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 PANTHER PTHR22573 68 524 3.8E-131 T 14-09-2016 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 SUPERFAMILY SSF53738 185 294 4.32E-22 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 Gene3D G3DSA:3.30.310.50 438 525 9.4E-9 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 60 166 2.3E-27 T 14-09-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 SUPERFAMILY SSF53738 286 430 6.67E-27 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 SUPERFAMILY SSF55957 419 528 4.84E-7 T 14-09-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 307 427 3.6E-16 T 14-09-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 PANTHER PTHR22573:SF54 4 43 3.8E-131 T 14-09-2016 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 PANTHER PTHR22573:SF54 68 524 3.8E-131 T 14-09-2016 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 SUPERFAMILY SSF53738 6 195 2.28E-33 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 Gene3D G3DSA:3.40.120.10 290 430 4.5E-32 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS03410 3ce929252d312023876bfa962984a587 530 Gene3D G3DSA:3.40.120.10 212 289 3.1E-20 T 14-09-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 Pfam PF00326 Prolyl oligopeptidase family 458 664 1.4E-47 T 14-09-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 3 216 2.2E-16 T 14-09-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 PANTHER PTHR11757:SF13 3 670 1.4E-217 T 14-09-2016 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 490 509 3.9E-33 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 575 590 3.9E-33 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 462 486 3.9E-33 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 520 540 3.9E-33 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 596 618 3.9E-33 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 435 453 3.9E-33 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 SUPERFAMILY SSF50993 3 383 5.23E-37 T 14-09-2016 ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 Gene3D G3DSA:3.40.50.1820 346 663 1.5E-80 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 SUPERFAMILY SSF53474 406 663 1.53E-47 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS01755 2f77db6bb047e11c41409c2c80de8151 672 PANTHER PTHR11757 3 670 1.4E-217 T 14-09-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 ccrud_RS09765 dffb4095bca06179bfb9fe69cbcf3b23 133 Gene3D G3DSA:2.60.120.10 8 121 1.1E-26 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS09765 dffb4095bca06179bfb9fe69cbcf3b23 133 Pfam PF07883 Cupin domain 36 103 6.1E-11 T 14-09-2016 IPR013096 Cupin 2, conserved barrel ccrud_RS09765 dffb4095bca06179bfb9fe69cbcf3b23 133 SUPERFAMILY SSF51182 8 123 5.63E-24 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS09765 dffb4095bca06179bfb9fe69cbcf3b23 133 PANTHER PTHR33570:SF5 9 133 4.6E-26 T 14-09-2016 ccrud_RS09765 dffb4095bca06179bfb9fe69cbcf3b23 133 PANTHER PTHR33570 9 133 4.6E-26 T 14-09-2016 ccrud_RS07550 5002e649293c5e1163d30e25db14fcf9 137 Pfam PF01883 Domain of unknown function DUF59 39 99 5.5E-18 T 14-09-2016 IPR002744 Domain of unknown function DUF59 ccrud_RS07550 5002e649293c5e1163d30e25db14fcf9 137 SUPERFAMILY SSF117916 38 130 1.08E-26 T 14-09-2016 ccrud_RS07550 5002e649293c5e1163d30e25db14fcf9 137 PANTHER PTHR13696 15 137 9.1E-17 T 14-09-2016 ccrud_RS07550 5002e649293c5e1163d30e25db14fcf9 137 PANTHER PTHR13696:SF62 15 137 9.1E-17 T 14-09-2016 ccrud_RS03465 1051df68e5c9989429a567562cfee2e5 138 PIRSF PIRSF017349 1 137 5.6E-68 T 14-09-2016 IPR014487 Protein of unknown function DUF3151 ccrud_RS03465 1051df68e5c9989429a567562cfee2e5 138 Pfam PF11349 Protein of unknown function (DUF3151) 9 132 6.8E-50 T 14-09-2016 IPR014487 Protein of unknown function DUF3151 ccrud_RS07345 fcbc4c2b16019011d0712beadb023afb 203 SUPERFAMILY SSF53335 9 190 8.03E-24 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07345 fcbc4c2b16019011d0712beadb023afb 203 Gene3D G3DSA:3.40.50.150 10 189 1.1E-24 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07345 fcbc4c2b16019011d0712beadb023afb 203 Pfam PF13649 Methyltransferase domain 49 139 2.1E-12 T 14-09-2016 ccrud_RS10425 db2eebe6446fb5df4df80b342ecc4aa8 133 Gene3D G3DSA:1.25.40.20 31 110 4.5E-22 T 14-09-2016 IPR020683 Ankyrin repeat-containing domain ccrud_RS10425 db2eebe6446fb5df4df80b342ecc4aa8 133 SUPERFAMILY SSF48403 34 110 2.49E-21 T 14-09-2016 IPR020683 Ankyrin repeat-containing domain ccrud_RS10425 db2eebe6446fb5df4df80b342ecc4aa8 133 Pfam PF13857 Ankyrin repeats (many copies) 36 88 8.9E-14 T 14-09-2016 ccrud_RS10425 db2eebe6446fb5df4df80b342ecc4aa8 133 SMART SM00248 48 77 2.1E-6 T 14-09-2016 IPR002110 Ankyrin repeat GO:0005515 ccrud_RS10425 db2eebe6446fb5df4df80b342ecc4aa8 133 SMART SM00248 81 110 2.9 T 14-09-2016 IPR002110 Ankyrin repeat GO:0005515 ccrud_RS10425 db2eebe6446fb5df4df80b342ecc4aa8 133 PANTHER PTHR24124:SF9 3 132 1.0E-38 T 14-09-2016 ccrud_RS10425 db2eebe6446fb5df4df80b342ecc4aa8 133 PANTHER PTHR24124 3 132 1.0E-38 T 14-09-2016 ccrud_RS10425 db2eebe6446fb5df4df80b342ecc4aa8 133 PRINTS PR01415 Ankyrin repeat signature 97 111 2.1E-5 T 14-09-2016 IPR002110 Ankyrin repeat GO:0005515 ccrud_RS10425 db2eebe6446fb5df4df80b342ecc4aa8 133 PRINTS PR01415 Ankyrin repeat signature 49 64 2.1E-5 T 14-09-2016 IPR002110 Ankyrin repeat GO:0005515 ccrud_RS12530 0b173a39e1d6a244aa225cfa83fafd90 466 Gene3D G3DSA:1.20.1250.20 244 441 1.0E-6 T 14-09-2016 ccrud_RS12530 0b173a39e1d6a244aa225cfa83fafd90 466 Gene3D G3DSA:1.20.1250.20 9 195 2.6E-18 T 14-09-2016 ccrud_RS12530 0b173a39e1d6a244aa225cfa83fafd90 466 SUPERFAMILY SSF103473 8 443 1.31E-32 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS12530 0b173a39e1d6a244aa225cfa83fafd90 466 PANTHER PTHR23513 4 444 7.5E-29 T 14-09-2016 ccrud_RS12530 0b173a39e1d6a244aa225cfa83fafd90 466 Pfam PF07690 Major Facilitator Superfamily 11 378 8.2E-24 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS00855 fd91b62ee238747243efe698d3532b8d 337 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 125 9.9E-25 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 ccrud_RS00855 fd91b62ee238747243efe698d3532b8d 337 Gene3D G3DSA:3.40.50.720 1 147 6.8E-40 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00855 fd91b62ee238747243efe698d3532b8d 337 Hamap MF_01671 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase [iolG]. 3 337 45.763 T 14-09-2016 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase GO:0019310|GO:0050112|GO:0055114 KEGG: 00521+1.1.1.18|KEGG: 00562+1.1.1.18|MetaCyc: PWY-5940|MetaCyc: PWY-7237|MetaCyc: PWY-7241 ccrud_RS00855 fd91b62ee238747243efe698d3532b8d 337 SUPERFAMILY SSF55347 131 286 3.05E-11 T 14-09-2016 ccrud_RS00855 fd91b62ee238747243efe698d3532b8d 337 Gene3D G3DSA:3.30.360.10 148 260 6.3E-32 T 14-09-2016 ccrud_RS00855 fd91b62ee238747243efe698d3532b8d 337 PANTHER PTHR22604:SF103 1 337 2.7E-113 T 14-09-2016 ccrud_RS00855 fd91b62ee238747243efe698d3532b8d 337 PANTHER PTHR22604 1 337 2.7E-113 T 14-09-2016 ccrud_RS00855 fd91b62ee238747243efe698d3532b8d 337 SUPERFAMILY SSF51735 2 154 5.12E-39 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS04285 9d326400adeb438742eb8bf68f3aabe5 54 PANTHER PTHR15238 1 53 3.4E-22 T 14-09-2016 ccrud_RS04285 9d326400adeb438742eb8bf68f3aabe5 54 ProSitePatterns PS00582 Ribosomal protein L33 signature. 22 41 - T 14-09-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04285 9d326400adeb438742eb8bf68f3aabe5 54 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 1 54 2.1E-23 T 14-09-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04285 9d326400adeb438742eb8bf68f3aabe5 54 SUPERFAMILY SSF57829 4 54 7.32E-18 T 14-09-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 ccrud_RS04285 9d326400adeb438742eb8bf68f3aabe5 54 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 2 54 14.237 T 14-09-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS04285 9d326400adeb438742eb8bf68f3aabe5 54 Pfam PF00471 Ribosomal protein L33 9 54 5.5E-17 T 14-09-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS03340 2bd89e6b4a4e08acad38ce402a457823 219 PANTHER PTHR30506 1 209 9.0E-106 T 14-09-2016 ccrud_RS03340 2bd89e6b4a4e08acad38ce402a457823 219 PANTHER PTHR30506:SF2 1 209 9.0E-106 T 14-09-2016 ccrud_RS03340 2bd89e6b4a4e08acad38ce402a457823 219 Pfam PF03458 UPF0126 domain 5 77 3.4E-18 T 14-09-2016 IPR005115 Uncharacterised domain UPF0126 ccrud_RS03340 2bd89e6b4a4e08acad38ce402a457823 219 Pfam PF03458 UPF0126 domain 91 163 1.4E-21 T 14-09-2016 IPR005115 Uncharacterised domain UPF0126 ccrud_RS01235 f32ec4eb3a8c5a35843ecaada76e2401 364 Gene3D G3DSA:3.40.50.300 166 265 2.2E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01235 f32ec4eb3a8c5a35843ecaada76e2401 364 SUPERFAMILY SSF52540 159 286 5.69E-7 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03300 28bc9593ca0e36e106b0ee677e018eae 738 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 1 738 0.0 T 14-09-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 ccrud_RS03300 28bc9593ca0e36e106b0ee677e018eae 738 Pfam PF03971 Monomeric isocitrate dehydrogenase 3 734 0.0 T 14-09-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 ccrud_RS03300 28bc9593ca0e36e106b0ee677e018eae 738 PANTHER PTHR36999 1 738 0.0 T 14-09-2016 ccrud_RS03300 28bc9593ca0e36e106b0ee677e018eae 738 Gene3D G3DSA:3.40.718.10 335 358 5.5E-32 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 ccrud_RS03300 28bc9593ca0e36e106b0ee677e018eae 738 Gene3D G3DSA:3.40.718.10 534 642 5.5E-32 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 ccrud_RS03300 28bc9593ca0e36e106b0ee677e018eae 738 Gene3D G3DSA:3.40.718.10 169 285 5.5E-32 T 14-09-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 ccrud_RS03300 28bc9593ca0e36e106b0ee677e018eae 738 SUPERFAMILY SSF53659 2 736 0.0 T 14-09-2016 ccrud_RS03300 28bc9593ca0e36e106b0ee677e018eae 738 PIRSF PIRSF009407 1 737 0.0 T 14-09-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 ccrud_RS02490 2ab94e42c38f638baff7cef133dc17ea 112 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 57 108 1.3E-14 T 14-09-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 ccrud_RS02490 2ab94e42c38f638baff7cef133dc17ea 112 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 56 109 2.1E-15 T 14-09-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 ccrud_RS02490 2ab94e42c38f638baff7cef133dc17ea 112 Hamap MF_00422 Protein translocase subunit SecE [secE]. 53 110 9.989 T 14-09-2016 IPR022943 Preprotein translocase subunit SecE ccrud_RS02490 2ab94e42c38f638baff7cef133dc17ea 112 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 58 86 - T 14-09-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 ccrud_RS02490 2ab94e42c38f638baff7cef133dc17ea 112 Gene3D G3DSA:1.20.5.1030 52 110 1.1E-17 T 14-09-2016 ccrud_RS06800 0c752c24cfb233b4e53384219ef84199 554 Gene3D G3DSA:3.40.50.880 301 549 2.4E-82 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS06800 0c752c24cfb233b4e53384219ef84199 554 Pfam PF06418 CTP synthase N-terminus 11 279 3.1E-121 T 14-09-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 ccrud_RS06800 0c752c24cfb233b4e53384219ef84199 554 Gene3D G3DSA:3.40.50.300 5 297 1.2E-129 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06800 0c752c24cfb233b4e53384219ef84199 554 SUPERFAMILY SSF52317 301 549 2.06E-65 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS06800 0c752c24cfb233b4e53384219ef84199 554 SUPERFAMILY SSF52540 10 279 2.5E-117 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06800 0c752c24cfb233b4e53384219ef84199 554 Hamap MF_01227 CTP synthase [pyrG]. 10 551 48.726 T 14-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 ccrud_RS06800 0c752c24cfb233b4e53384219ef84199 554 PANTHER PTHR11550 3 550 1.7E-304 T 14-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 ccrud_RS06800 0c752c24cfb233b4e53384219ef84199 554 TIGRFAM TIGR00337 PyrG: CTP synthase 9 545 8.7E-225 T 14-09-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 ccrud_RS06800 0c752c24cfb233b4e53384219ef84199 554 Pfam PF00117 Glutamine amidotransferase class-I 314 545 4.6E-44 T 14-09-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 ccrud_RS05005 8c00fc436536511b50b48c4dfe9ff43c 81 SUPERFAMILY SSF116842 17 78 4.71E-16 T 14-09-2016 ccrud_RS05005 8c00fc436536511b50b48c4dfe9ff43c 81 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 23 64 3.0E-17 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ccrud_RS05005 8c00fc436536511b50b48c4dfe9ff43c 81 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 23 81 11.4 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ccrud_RS05005 8c00fc436536511b50b48c4dfe9ff43c 81 Pfam PF02609 Exonuclease VII small subunit 24 75 1.5E-15 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ccrud_RS05005 8c00fc436536511b50b48c4dfe9ff43c 81 PANTHER PTHR34137 11 78 3.9E-16 T 14-09-2016 ccrud_RS05005 8c00fc436536511b50b48c4dfe9ff43c 81 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 23 78 4.7E-20 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ccrud_RS05005 8c00fc436536511b50b48c4dfe9ff43c 81 Gene3D G3DSA:1.10.287.1040 19 79 6.1E-21 T 14-09-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 623 39.638 T 14-09-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 Pfam PF13522 Glutamine amidotransferase domain 71 192 4.2E-20 T 14-09-2016 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 PANTHER PTHR10937 1 623 3.7E-303 T 14-09-2016 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 PANTHER PTHR10937:SF0 1 623 3.7E-303 T 14-09-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 SUPERFAMILY SSF56235 2 238 7.63E-63 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 623 8.3E-238 T 14-09-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 Gene3D G3DSA:3.40.50.10490 254 452 6.1E-73 T 14-09-2016 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 Pfam PF01380 SIS domain 300 425 1.9E-30 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 Pfam PF01380 SIS domain 472 604 5.2E-22 T 14-09-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 Gene3D G3DSA:3.60.20.10 2 250 3.5E-73 T 14-09-2016 IPR029055 Nucleophile aminohydrolases, N-terminal ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 SUPERFAMILY SSF53697 255 623 2.78E-110 T 14-09-2016 ccrud_RS10010 dc770f75e3ee2369d0d62471b688783b 623 Gene3D G3DSA:3.40.50.10490 453 623 1.4E-62 T 14-09-2016 ccrud_RS01970 45432420f0599e817999b11af9d318e8 474 Pfam PF09856 Predicted transcriptional regulator (DUF2083) 318 474 1.6E-67 T 14-09-2016 IPR018653 Domain of unknown function DUF2083,transcriptional regulator ccrud_RS01970 45432420f0599e817999b11af9d318e8 474 Gene3D G3DSA:1.10.260.40 4 72 2.9E-19 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS01970 45432420f0599e817999b11af9d318e8 474 PIRSF PIRSF019251 1 474 7.5E-180 T 14-09-2016 IPR026281 HTH-type transcriptional regulator RamB GO:0006355 ccrud_RS01970 45432420f0599e817999b11af9d318e8 474 Pfam PF01381 Helix-turn-helix 10 63 1.4E-11 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS01970 45432420f0599e817999b11af9d318e8 474 SMART SM00530 9 64 4.1E-14 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS01970 45432420f0599e817999b11af9d318e8 474 Pfam PF06114 Domain of unknown function (DUF955) 197 317 4.3E-20 T 14-09-2016 IPR010359 HTH domain, IrrE-type ccrud_RS01970 45432420f0599e817999b11af9d318e8 474 SUPERFAMILY SSF47413 4 69 9.92E-15 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS01970 45432420f0599e817999b11af9d318e8 474 PANTHER PTHR10245 5 100 1.2E-13 T 14-09-2016 ccrud_RS00035 15d266460f454d9577860e943430e9b7 291 Pfam PF00561 alpha/beta hydrolase fold 34 135 6.7E-11 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS00035 15d266460f454d9577860e943430e9b7 291 Gene3D G3DSA:3.40.50.1820 11 285 2.6E-21 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00035 15d266460f454d9577860e943430e9b7 291 PIRSF PIRSF037442 3 291 3.7E-81 T 14-09-2016 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 ccrud_RS00035 15d266460f454d9577860e943430e9b7 291 SUPERFAMILY SSF53474 6 275 3.79E-28 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS03890 c34c1e9c20980996899b61069e40f095 229 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS03890 c34c1e9c20980996899b61069e40f095 229 SUPERFAMILY SSF52540 1 220 2.94E-68 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03890 c34c1e9c20980996899b61069e40f095 229 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 3.9E-83 T 14-09-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 ccrud_RS03890 c34c1e9c20980996899b61069e40f095 229 PANTHER PTHR24220 3 220 4.1E-110 T 14-09-2016 ccrud_RS03890 c34c1e9c20980996899b61069e40f095 229 PANTHER PTHR24220:SF470 3 220 4.1E-110 T 14-09-2016 ccrud_RS03890 c34c1e9c20980996899b61069e40f095 229 Gene3D G3DSA:3.40.50.300 1 222 1.8E-70 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03890 c34c1e9c20980996899b61069e40f095 229 Pfam PF00005 ABC transporter 19 166 1.3E-32 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS03890 c34c1e9c20980996899b61069e40f095 229 SMART SM00382 28 215 1.3E-13 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 Gene3D G3DSA:3.40.630.40 188 371 3.7E-35 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 PANTHER PTHR30032 130 371 1.1E-32 T 14-09-2016 ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 191 368 7.3E-31 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 SUPERFAMILY SSF53187 188 371 1.19E-35 T 14-09-2016 ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 SMART SM00646 253 368 3.3E-17 T 14-09-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 SUPERFAMILY SSF47090 100 158 1.52E-16 T 14-09-2016 IPR002477 Peptidoglycan binding-like ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 Pfam PF01471 Putative peptidoglycan binding domain 103 158 5.7E-15 T 14-09-2016 IPR002477 Peptidoglycan binding-like ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 PANTHER PTHR30032:SF1 130 371 1.1E-32 T 14-09-2016 ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 Gene3D G3DSA:1.10.101.10 101 159 3.7E-18 T 14-09-2016 IPR002477 Peptidoglycan binding-like ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 Gene3D G3DSA:1.10.101.10 3 89 6.9E-9 T 14-09-2016 IPR002477 Peptidoglycan binding-like ccrud_RS13920 477fe8ff4b5cadb49b75dc9341ded43c 396 SUPERFAMILY SSF47090 3 82 1.19E-6 T 14-09-2016 IPR002477 Peptidoglycan binding-like ccrud_RS05725 584e4c121748b14c332c1fc72c87f6f0 259 Pfam PF02665 Nitrate reductase gamma subunit 6 227 1.7E-86 T 14-09-2016 IPR023234 NarG-like domain ccrud_RS05725 584e4c121748b14c332c1fc72c87f6f0 259 PANTHER PTHR30598:SF3 1 245 5.5E-103 T 14-09-2016 ccrud_RS05725 584e4c121748b14c332c1fc72c87f6f0 259 Gene3D G3DSA:1.20.950.20 2 219 7.0E-73 T 14-09-2016 ccrud_RS05725 584e4c121748b14c332c1fc72c87f6f0 259 PANTHER PTHR30598 1 245 5.5E-103 T 14-09-2016 ccrud_RS05725 584e4c121748b14c332c1fc72c87f6f0 259 SUPERFAMILY SSF103501 1 227 8.37E-70 T 14-09-2016 IPR023234 NarG-like domain ccrud_RS05725 584e4c121748b14c332c1fc72c87f6f0 259 TIGRFAM TIGR00351 narI: respiratory nitrate reductase, gamma subunit 5 227 7.5E-57 T 14-09-2016 IPR003816 Nitrate reductase, gamma subunit GO:0008940|GO:0009325|GO:0055114 KEGG: 00910+1.7.99.4 ccrud_RS10030 49c14a819759799e5fd3ba482b7b8629 215 Pfam PF02698 DUF218 domain 27 151 7.5E-19 T 14-09-2016 IPR003848 Domain of unknown function DUF218 ccrud_RS10030 49c14a819759799e5fd3ba482b7b8629 215 Gene3D G3DSA:3.40.50.620 20 151 1.1E-11 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS10030 49c14a819759799e5fd3ba482b7b8629 215 PANTHER PTHR30336 1 148 8.4E-18 T 14-09-2016 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 PIRSF PIRSF005962 1 409 9.5E-100 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 Gene3D G3DSA:3.30.70.360 198 314 3.3E-35 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 PANTHER PTHR11014 18 405 3.8E-104 T 14-09-2016 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 21 385 5.9E-77 T 14-09-2016 IPR017439 Amidohydrolase GO:0016787 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 Pfam PF07687 Peptidase dimerisation domain 198 296 1.6E-13 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 Pfam PF01546 Peptidase family M20/M25/M40 76 383 7.1E-20 T 14-09-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 PANTHER PTHR11014:SF89 18 405 3.8E-104 T 14-09-2016 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 Gene3D G3DSA:3.40.630.10 315 409 9.5E-77 T 14-09-2016 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 Gene3D G3DSA:3.40.630.10 3 193 9.5E-77 T 14-09-2016 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 SUPERFAMILY SSF53187 315 408 2.36E-66 T 14-09-2016 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 SUPERFAMILY SSF53187 5 212 2.36E-66 T 14-09-2016 ccrud_RS13325 0ce5b3565849d7877ca3cda3ef80981f 415 SUPERFAMILY SSF55031 200 297 8.24E-27 T 14-09-2016 IPR011650 Peptidase M20, dimerisation domain ccrud_RS05085 968e6dc3bc34f70c7f2af8fb0ea82f7f 131 PANTHER PTHR33993 1 131 2.0E-19 T 14-09-2016 ccrud_RS05085 968e6dc3bc34f70c7f2af8fb0ea82f7f 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 6 121 1.8E-4 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ccrud_RS05085 968e6dc3bc34f70c7f2af8fb0ea82f7f 131 Gene3D G3DSA:3.10.180.10 3 128 1.5E-28 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS05085 968e6dc3bc34f70c7f2af8fb0ea82f7f 131 SUPERFAMILY SSF54593 3 127 3.03E-20 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 SUPERFAMILY SSF52540 542 755 8.25E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 SUPERFAMILY SSF52540 205 284 8.25E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 SUPERFAMILY SSF52540 398 439 8.25E-48 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 PANTHER PTHR11070:SF25 485 702 4.7E-119 T 14-09-2016 ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 PANTHER PTHR11070:SF25 107 376 4.7E-119 T 14-09-2016 ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 Gene3D G3DSA:3.40.50.300 538 635 3.0E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 Gene3D G3DSA:3.40.50.300 206 314 3.0E-30 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 PANTHER PTHR11070 485 702 4.7E-119 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 PANTHER PTHR11070 107 376 4.7E-119 T 14-09-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 Gene3D G3DSA:3.40.50.300 636 753 1.4E-13 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 Pfam PF01443 Viral (Superfamily 1) RNA helicase 546 753 7.0E-10 T 14-09-2016 IPR027351 (+) RNA virus helicase core domain GO:0005524 ccrud_RS06590 b37157dfc78b3a4222d7fda6c931046d 756 Pfam PF13245 Part of AAA domain 222 287 2.6E-15 T 14-09-2016 ccrud_RS13835 55adf438c9bf643b3db3ac24416f66a3 106 Gene3D G3DSA:1.10.287.1080 1 85 1.3E-21 T 14-09-2016 ccrud_RS13835 55adf438c9bf643b3db3ac24416f66a3 106 Pfam PF12643 MazG-like family 31 106 2.4E-19 T 14-09-2016 IPR025984 MazG-like domain KEGG: 00240+3.6.1.12 ccrud_RS13835 55adf438c9bf643b3db3ac24416f66a3 106 PIRSF PIRSF029826 1 106 3.8E-34 T 14-09-2016 IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 ccrud_RS13835 55adf438c9bf643b3db3ac24416f66a3 106 SUPERFAMILY SSF101386 6 105 2.18E-29 T 14-09-2016 ccrud_RS13835 55adf438c9bf643b3db3ac24416f66a3 106 PANTHER PTHR14552:SF12 1 106 1.1E-20 T 14-09-2016 ccrud_RS13835 55adf438c9bf643b3db3ac24416f66a3 106 PANTHER PTHR14552 1 106 1.1E-20 T 14-09-2016 ccrud_RS00120 4c63d622fc41d7e027870c494950bf17 347 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 333 3.8E-51 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 ccrud_RS00120 4c63d622fc41d7e027870c494950bf17 347 PANTHER PTHR32196 17 346 5.8E-80 T 14-09-2016 ccrud_RS00120 4c63d622fc41d7e027870c494950bf17 347 PANTHER PTHR32196:SF22 17 346 5.8E-80 T 14-09-2016 ccrud_RS13425 a1483e3325e7c421a8aa3e68380b3d8a 64 PANTHER PTHR30547 1 64 8.7E-12 T 14-09-2016 ccrud_RS13425 a1483e3325e7c421a8aa3e68380b3d8a 64 PANTHER PTHR30547:SF0 1 64 8.7E-12 T 14-09-2016 ccrud_RS13425 a1483e3325e7c421a8aa3e68380b3d8a 64 Pfam PF06250 Protein of unknown function (DUF1016) 17 63 1.7E-11 T 14-09-2016 IPR009362 Protein of unknown function DUF1016 ccrud_RS10210 a870650c6566e604e3a49aba1b12bfa2 326 PANTHER PTHR30137 1 322 7.4E-106 T 14-09-2016 ccrud_RS10210 a870650c6566e604e3a49aba1b12bfa2 326 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 5 322 5.4E-118 T 14-09-2016 IPR019949 Luciferase family oxidoreductase, group 1 ccrud_RS10210 a870650c6566e604e3a49aba1b12bfa2 326 Pfam PF00296 Luciferase-like monooxygenase 18 294 9.1E-37 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS10210 a870650c6566e604e3a49aba1b12bfa2 326 Gene3D G3DSA:3.20.20.30 4 322 1.5E-78 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS10210 a870650c6566e604e3a49aba1b12bfa2 326 SUPERFAMILY SSF51679 4 322 4.24E-72 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS10210 a870650c6566e604e3a49aba1b12bfa2 326 PANTHER PTHR30137:SF2 1 322 7.4E-106 T 14-09-2016 ccrud_RS10180 a95c9565081629a741b74d57ce84b4dc 189 Pfam PF00293 NUDIX domain 33 160 9.6E-15 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS10180 a95c9565081629a741b74d57ce84b4dc 189 TIGRFAM TIGR02150 IPP_isom_1: isopentenyl-diphosphate delta-isomerase 8 172 6.7E-46 T 14-09-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 ccrud_RS10180 a95c9565081629a741b74d57ce84b4dc 189 PANTHER PTHR10885 6 169 6.7E-37 T 14-09-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 ccrud_RS10180 a95c9565081629a741b74d57ce84b4dc 189 Gene3D G3DSA:3.90.79.10 6 170 2.5E-36 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS10180 a95c9565081629a741b74d57ce84b4dc 189 Hamap MF_00202 Isopentenyl-diphosphate Delta-isomerase [idi]. 6 184 34.253 T 14-09-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 ccrud_RS10180 a95c9565081629a741b74d57ce84b4dc 189 SUPERFAMILY SSF55811 6 173 4.47E-39 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS10180 a95c9565081629a741b74d57ce84b4dc 189 PIRSF PIRSF018427 1 187 6.3E-54 T 14-09-2016 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 GO:0004452|GO:0008299 KEGG: 00900+5.3.3.2|MetaCyc: PWY-5123|MetaCyc: PWY-6174|MetaCyc: PWY-6383|MetaCyc: PWY-6859|MetaCyc: PWY-7102|MetaCyc: PWY-7391|MetaCyc: PWY-7524|MetaCyc: PWY-7560|MetaCyc: PWY-922|Reactome: REACT_22258|UniPathway: UPA00059 ccrud_RS11440 af5978f376acb0af1ea59c549281e3c7 849 PANTHER PTHR30489 241 849 1.1E-132 T 14-09-2016 ccrud_RS11440 af5978f376acb0af1ea59c549281e3c7 849 Pfam PF02687 FtsX-like permease family 726 843 1.1E-21 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS11440 af5978f376acb0af1ea59c549281e3c7 849 Pfam PF02687 FtsX-like permease family 269 383 8.1E-20 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS11440 af5978f376acb0af1ea59c549281e3c7 849 Pfam PF12704 MacB-like periplasmic core domain 23 231 5.8E-10 T 14-09-2016 IPR025857 MacB-like periplasmic core domain ccrud_RS11440 af5978f376acb0af1ea59c549281e3c7 849 Pfam PF12704 MacB-like periplasmic core domain 491 692 1.4E-9 T 14-09-2016 IPR025857 MacB-like periplasmic core domain ccrud_RS11440 af5978f376acb0af1ea59c549281e3c7 849 PANTHER PTHR30489 1 194 1.1E-132 T 14-09-2016 ccrud_RS11440 af5978f376acb0af1ea59c549281e3c7 849 PANTHER PTHR30489:SF9 241 849 1.1E-132 T 14-09-2016 ccrud_RS11440 af5978f376acb0af1ea59c549281e3c7 849 PANTHER PTHR30489:SF9 1 194 1.1E-132 T 14-09-2016 ccrud_RS12335 5e8c4bf8f31fb129beb7cd1d48acbf98 169 PANTHER PTHR34584:SF1 7 157 4.2E-19 T 14-09-2016 ccrud_RS12335 5e8c4bf8f31fb129beb7cd1d48acbf98 169 Pfam PF01899 Na+/H+ ion antiporter subunit 15 154 5.1E-30 T 14-09-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 ccrud_RS12335 5e8c4bf8f31fb129beb7cd1d48acbf98 169 PANTHER PTHR34584 7 157 4.2E-19 T 14-09-2016 ccrud_RS12640 228e64231b954d3a8c4b4f8e4d1e08d2 309 Pfam PF01925 Sulfite exporter TauE/SafE 7 246 1.2E-37 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 ccrud_RS12640 228e64231b954d3a8c4b4f8e4d1e08d2 309 PANTHER PTHR30269 1 259 1.3E-73 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 ccrud_RS12640 228e64231b954d3a8c4b4f8e4d1e08d2 309 PANTHER PTHR30269:SF5 1 259 1.3E-73 T 14-09-2016 ccrud_RS11930 b5be4c8e86cc4050bb8b69327398e5ea 253 Gene3D G3DSA:3.40.50.1360 1 250 1.6E-82 T 14-09-2016 ccrud_RS11930 b5be4c8e86cc4050bb8b69327398e5ea 253 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 25 225 1.5E-19 T 14-09-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 ccrud_RS11930 b5be4c8e86cc4050bb8b69327398e5ea 253 TIGRFAM TIGR00502 nagB: glucosamine-6-phosphate deaminase 1 242 1.1E-72 T 14-09-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|UniPathway: UPA00629 ccrud_RS11930 b5be4c8e86cc4050bb8b69327398e5ea 253 PANTHER PTHR11280 1 239 2.9E-88 T 14-09-2016 IPR004547 Glucosamine-6-phosphate isomerase GO:0004342|GO:0006044 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906|UniPathway: UPA00629 ccrud_RS11930 b5be4c8e86cc4050bb8b69327398e5ea 253 SUPERFAMILY SSF100950 1 247 7.12E-81 T 14-09-2016 ccrud_RS13275 16c60e1fbafb8d44375250a5f82f01a4 587 SUPERFAMILY SSF53474 328 442 1.28E-6 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13275 16c60e1fbafb8d44375250a5f82f01a4 587 SUPERFAMILY SSF53474 497 529 1.28E-6 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13275 16c60e1fbafb8d44375250a5f82f01a4 587 Pfam PF15420 Alpha/beta-hydrolase family N-terminus 70 269 2.0E-47 T 14-09-2016 IPR027788 Alpha/beta-hydrolase, N-terminal domain ccrud_RS13275 16c60e1fbafb8d44375250a5f82f01a4 587 Pfam PF10081 Alpha/beta-hydrolase family 289 570 1.6E-103 T 14-09-2016 IPR027787 Alpha/beta-hydrolase, catalytic domain ccrud_RS13275 16c60e1fbafb8d44375250a5f82f01a4 587 PIRSF PIRSF007542 11 587 1.8E-215 T 14-09-2016 IPR012037 Alpha/beta-hydrolase family ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 SUPERFAMILY SSF53671 1 306 5.37E-96 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PANTHER PTHR11405 1 304 3.9E-126 T 14-09-2016 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 1 307 41.238 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 Gene3D G3DSA:3.40.50.1370 1 145 7.4E-51 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 Gene3D G3DSA:3.40.50.1370 146 292 1.1E-49 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PANTHER PTHR11405:SF16 1 304 3.9E-126 T 14-09-2016 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 157 303 9.4E-24 T 14-09-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 138 149 8.1E-19 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 258 267 8.1E-19 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 8.1E-19 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 270 293 8.1E-19 T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 14-09-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 2 150 4.0E-40 T 14-09-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 2 304 6.7E-95 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 137 154 1.3E-32 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 39 61 1.3E-32 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 286 300 1.3E-32 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 221 230 1.3E-32 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 262 267 1.3E-32 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS07795 e270a8ca53f9c918f52bd08fe176d2cb 312 PRINTS PR00101 Aspartate carbamoyltransferase signature 77 86 1.3E-32 T 14-09-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS11985 5b823bb04ce32ac16674d717ab9df4ec 160 PANTHER PTHR32125 5 160 1.2E-21 T 14-09-2016 ccrud_RS11985 5b823bb04ce32ac16674d717ab9df4ec 160 SUPERFAMILY SSF69765 7 158 4.71E-47 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS11985 5b823bb04ce32ac16674d717ab9df4ec 160 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 41 56 - T 14-09-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS11985 5b823bb04ce32ac16674d717ab9df4ec 160 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 7 159 28.806 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS11985 5b823bb04ce32ac16674d717ab9df4ec 160 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 8 158 1.3E-42 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS11985 5b823bb04ce32ac16674d717ab9df4ec 160 Pfam PF02542 YgbB family 8 157 4.6E-41 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS11985 5b823bb04ce32ac16674d717ab9df4ec 160 Gene3D G3DSA:3.30.1330.50 5 159 1.5E-49 T 14-09-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 ccrud_RS13720 65583b147065ec33faecd7942e895142 513 PANTHER PTHR33843 2 475 4.9E-213 T 14-09-2016 ccrud_RS13720 65583b147065ec33faecd7942e895142 513 PANTHER PTHR33843:SF4 2 475 4.9E-213 T 14-09-2016 ccrud_RS13720 65583b147065ec33faecd7942e895142 513 Pfam PF03611 PTS system sugar-specific permease component 14 426 2.6E-128 T 14-09-2016 IPR004703 Phosphotransferase system, sugar-specific permease component GO:0009401|GO:0016021 ccrud_RS11695 cf32ce0d4774930b975382116c412f35 876 Gene3D G3DSA:3.60.10.10 534 817 4.2E-25 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS11695 cf32ce0d4774930b975382116c412f35 876 Gene3D G3DSA:3.60.10.10 492 501 4.2E-25 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS11695 cf32ce0d4774930b975382116c412f35 876 PANTHER PTHR11371 1 822 2.3E-86 T 14-09-2016 IPR016202 Deoxyribonuclease I GO:0004536|GO:0006308 ccrud_RS11695 cf32ce0d4774930b975382116c412f35 876 SUPERFAMILY SSF74853 52 142 4.32E-6 T 14-09-2016 IPR001322 Lamin Tail Domain ccrud_RS11695 cf32ce0d4774930b975382116c412f35 876 Pfam PF00932 Lamin Tail Domain 33 147 8.1E-18 T 14-09-2016 IPR001322 Lamin Tail Domain ccrud_RS11695 cf32ce0d4774930b975382116c412f35 876 PANTHER PTHR11371:SF31 1 822 2.3E-86 T 14-09-2016 ccrud_RS11695 cf32ce0d4774930b975382116c412f35 876 SUPERFAMILY SSF56219 490 505 5.33E-28 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS11695 cf32ce0d4774930b975382116c412f35 876 SUPERFAMILY SSF56219 536 819 5.33E-28 T 14-09-2016 IPR005135 Endonuclease/exonuclease/phosphatase ccrud_RS11240 ed68357c309893955716facbb556a15a 181 Pfam PF07853 Protein of unknown function (DUF1648) 26 66 2.9E-12 T 14-09-2016 IPR012867 Domain of unknown function DUF1648 ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 Gene3D G3DSA:3.40.50.980 193 224 3.0E-38 T 14-09-2016 ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 Gene3D G3DSA:3.40.50.980 26 154 3.0E-38 T 14-09-2016 ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 PANTHER PTHR24096 186 561 3.3E-145 T 14-09-2016 ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 PANTHER PTHR24096 18 155 3.3E-145 T 14-09-2016 ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 Gene3D G3DSA:3.30.300.30 463 561 2.8E-30 T 14-09-2016 ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 ProSitePatterns PS00455 Putative AMP-binding domain signature. 219 230 - T 14-09-2016 IPR020845 AMP-binding, conserved site ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 Gene3D G3DSA:2.30.38.10 386 462 3.1E-25 T 14-09-2016 ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 Pfam PF13193 AMP-binding enzyme C-terminal domain 477 552 7.1E-14 T 14-09-2016 IPR025110 AMP-binding enzyme C-terminal domain ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 SUPERFAMILY SSF56801 15 564 1.44E-146 T 14-09-2016 ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 Gene3D G3DSA:3.40.50.980 225 384 9.6E-42 T 14-09-2016 ccrud_RS02105 ebb82fce74f41dedfa4604c9687cbe47 568 Pfam PF00501 AMP-binding enzyme 39 468 9.3E-104 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 ccrud_RS13095 55ebf31dec672508c3bc747b17666cd4 447 Pfam PF02447 GntP family permease 5 444 1.2E-149 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 ccrud_RS13095 55ebf31dec672508c3bc747b17666cd4 447 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 5 446 4.5E-158 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 ccrud_RS13095 55ebf31dec672508c3bc747b17666cd4 447 PANTHER PTHR30354 1 447 9.6E-250 T 14-09-2016 ccrud_RS13095 55ebf31dec672508c3bc747b17666cd4 447 PANTHER PTHR30354:SF5 1 447 9.6E-250 T 14-09-2016 ccrud_RS13095 55ebf31dec672508c3bc747b17666cd4 447 PIRSF PIRSF002746 1 447 4.6E-136 T 14-09-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 ccrud_RS02200 b7a78b2936e16d936d6d5492666de158 622 Pfam PF01261 Xylose isomerase-like TIM barrel 18 217 1.7E-40 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS02200 b7a78b2936e16d936d6d5492666de158 622 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 434 570 2.4E-6 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ccrud_RS02200 b7a78b2936e16d936d6d5492666de158 622 PANTHER PTHR12110 1 285 3.2E-75 T 14-09-2016 ccrud_RS02200 b7a78b2936e16d936d6d5492666de158 622 Gene3D G3DSA:3.10.180.10 431 612 1.0E-35 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS02200 b7a78b2936e16d936d6d5492666de158 622 Gene3D G3DSA:3.20.20.150 1 264 5.5E-75 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS02200 b7a78b2936e16d936d6d5492666de158 622 SUPERFAMILY SSF51658 1 268 5.67E-71 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS02200 b7a78b2936e16d936d6d5492666de158 622 Gene3D G3DSA:3.10.180.10 285 402 3.4E-9 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS02200 b7a78b2936e16d936d6d5492666de158 622 SUPERFAMILY SSF54593 287 609 1.29E-45 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS02200 b7a78b2936e16d936d6d5492666de158 622 PANTHER PTHR12110:SF14 1 285 3.2E-75 T 14-09-2016 ccrud_RS11305 9ef54b63aa765cd741dfc36e8ea14bab 100 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 26 94 1.1E-19 T 14-09-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 ccrud_RS11305 9ef54b63aa765cd741dfc36e8ea14bab 100 Gene3D G3DSA:3.30.1390.10 10 99 3.9E-27 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ccrud_RS11305 9ef54b63aa765cd741dfc36e8ea14bab 100 SUPERFAMILY SSF54736 24 97 2.2E-22 T 14-09-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like ccrud_RS11305 9ef54b63aa765cd741dfc36e8ea14bab 100 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 9 100 16.102 T 14-09-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS ccrud_RS11305 9ef54b63aa765cd741dfc36e8ea14bab 100 PANTHER PTHR33473 26 100 1.9E-19 T 14-09-2016 ccrud_RS10730 6fc00fc5250464e3c2c5c8a1be88a323 446 Gene3D G3DSA:1.20.1250.20 19 208 7.7E-30 T 14-09-2016 ccrud_RS10730 6fc00fc5250464e3c2c5c8a1be88a323 446 Gene3D G3DSA:1.20.1250.20 255 435 3.7E-24 T 14-09-2016 ccrud_RS10730 6fc00fc5250464e3c2c5c8a1be88a323 446 SUPERFAMILY SSF103473 13 432 1.29E-79 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS10730 6fc00fc5250464e3c2c5c8a1be88a323 446 PANTHER PTHR24064 26 428 7.2E-66 T 14-09-2016 ccrud_RS10730 6fc00fc5250464e3c2c5c8a1be88a323 446 ProSitePatterns PS00217 Sugar transport proteins signature 2. 121 146 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS10730 6fc00fc5250464e3c2c5c8a1be88a323 446 Pfam PF00083 Sugar (and other) transporter 30 334 1.1E-36 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 SUPERFAMILY SSF52540 4 244 4.11E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 Pfam PF00005 ABC transporter 22 163 1.0E-29 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 SMART SM00382 30 213 2.8E-11 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 Gene3D G3DSA:3.40.50.300 3 236 6.0E-72 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 Gene3D G3DSA:2.40.50.140 290 376 6.6E-7 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 PANTHER PTHR24220:SF151 5 299 3.3E-158 T 14-09-2016 ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 SUPERFAMILY SSF50331 353 393 1.32E-20 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 SUPERFAMILY SSF50331 238 325 1.32E-20 T 14-09-2016 IPR008995 Molybdate/tungstate binding, C-terminal ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 Gene3D G3DSA:2.40.50.100 241 289 1.9E-10 T 14-09-2016 ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 Gene3D G3DSA:2.40.50.100 379 393 1.9E-10 T 14-09-2016 ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 PANTHER PTHR24220 5 299 3.3E-158 T 14-09-2016 ccrud_RS06645 008f4dcd3ffc808b67b7319a5b1684c8 406 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS01930 3b9952a4a028c44347edb777b7f46e29 116 Pfam PF01757 Acyltransferase family 30 101 1.3E-15 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 ccrud_RS12995 a936543604902072c2946256bf331917 352 PANTHER PTHR23028 9 352 1.3E-55 T 14-09-2016 ccrud_RS12995 a936543604902072c2946256bf331917 352 PANTHER PTHR23028:SF75 9 352 1.3E-55 T 14-09-2016 ccrud_RS12995 a936543604902072c2946256bf331917 352 Pfam PF01757 Acyltransferase family 17 329 4.3E-28 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 ccrud_RS09170 d9176f9ade7d5ee99e5de9d9dcfab175 246 Pfam PF00977 Histidine biosynthesis protein 5 234 6.2E-65 T 14-09-2016 IPR006062 Histidine biosynthesis GO:0000105 ccrud_RS09170 d9176f9ade7d5ee99e5de9d9dcfab175 246 PANTHER PTHR21235:SF15 1 246 2.2E-77 T 14-09-2016 ccrud_RS09170 d9176f9ade7d5ee99e5de9d9dcfab175 246 SUPERFAMILY SSF51366 2 240 5.53E-62 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS09170 d9176f9ade7d5ee99e5de9d9dcfab175 246 Gene3D G3DSA:3.20.20.70 4 241 7.1E-73 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS09170 d9176f9ade7d5ee99e5de9d9dcfab175 246 PANTHER PTHR21235 1 246 2.2E-77 T 14-09-2016 ccrud_RS09170 d9176f9ade7d5ee99e5de9d9dcfab175 246 TIGRFAM TIGR01919 hisA-trpF: bifunctional HisA/TrpF protein 1 243 2.2E-140 T 14-09-2016 IPR010188 Bifunctional HisA/TrpF GO:0000105|GO:0000162|GO:0003949|GO:0004640|GO:0005737 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 ccrud_RS09170 d9176f9ade7d5ee99e5de9d9dcfab175 246 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 4 241 31.103 T 14-09-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 ccrud_RS06370 296cd58a64f7e9ef7c2f18043a71b8ae 123 PANTHER PTHR33570:SF4 36 123 3.3E-22 T 14-09-2016 ccrud_RS06370 296cd58a64f7e9ef7c2f18043a71b8ae 123 PANTHER PTHR33570 36 123 3.3E-22 T 14-09-2016 ccrud_RS06370 296cd58a64f7e9ef7c2f18043a71b8ae 123 SUPERFAMILY SSF69118 7 123 9.5E-23 T 14-09-2016 IPR029032 AhpD-like ccrud_RS06370 296cd58a64f7e9ef7c2f18043a71b8ae 123 Gene3D G3DSA:1.20.1290.10 8 122 2.4E-19 T 14-09-2016 IPR029032 AhpD-like ccrud_RS06370 296cd58a64f7e9ef7c2f18043a71b8ae 123 Pfam PF02627 Carboxymuconolactone decarboxylase family 44 118 1.7E-13 T 14-09-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 SUPERFAMILY SSF54373 269 356 8.11E-13 T 14-09-2016 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 SUPERFAMILY SSF51905 6 101 9.71E-45 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 SUPERFAMILY SSF51905 154 269 9.71E-45 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 SUPERFAMILY SSF51905 356 411 9.71E-45 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 Gene3D G3DSA:3.50.50.60 356 411 1.5E-52 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 Gene3D G3DSA:3.50.50.60 5 116 1.5E-52 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 Gene3D G3DSA:3.50.50.60 187 268 1.5E-52 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 PANTHER PTHR13847 7 61 1.9E-43 T 14-09-2016 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 PANTHER PTHR13847 124 411 1.9E-43 T 14-09-2016 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 PANTHER PTHR13847 84 101 1.9E-43 T 14-09-2016 ccrud_RS13615 9aa7fc3ff99eb6ad0584d998596f697b 411 Pfam PF01266 FAD dependent oxidoreductase 6 394 2.2E-54 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ccrud_RS04490 a46c5bd3b74eccd16c66e3d9bc9e9650 276 PANTHER PTHR10060:SF20 19 276 9.0E-96 T 14-09-2016 ccrud_RS04490 a46c5bd3b74eccd16c66e3d9bc9e9650 276 SUPERFAMILY SSF51556 17 274 2.05E-75 T 14-09-2016 IPR032466 Metal-dependent hydrolase ccrud_RS04490 a46c5bd3b74eccd16c66e3d9bc9e9650 276 Gene3D G3DSA:3.20.20.140 16 274 1.6E-81 T 14-09-2016 ccrud_RS04490 a46c5bd3b74eccd16c66e3d9bc9e9650 276 PIRSF PIRSF005902 11 276 4.8E-70 T 14-09-2016 IPR001130 TatD family GO:0016788 ccrud_RS04490 a46c5bd3b74eccd16c66e3d9bc9e9650 276 PANTHER PTHR10060 19 276 9.0E-96 T 14-09-2016 IPR001130 TatD family GO:0016788 ccrud_RS04490 a46c5bd3b74eccd16c66e3d9bc9e9650 276 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 19 273 1.8E-73 T 14-09-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 ccrud_RS04490 a46c5bd3b74eccd16c66e3d9bc9e9650 276 Pfam PF01026 TatD related DNase 20 272 1.1E-67 T 14-09-2016 IPR001130 TatD family GO:0016788 ccrud_RS07210 b0b880c3bab3b85b8919649f5add1402 108 Gene3D G3DSA:1.10.1220.10 73 106 1.8E-4 T 14-09-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 ccrud_RS07210 b0b880c3bab3b85b8919649f5add1402 108 Pfam PF05534 HicB family 57 105 2.1E-18 T 14-09-2016 IPR008651 Uncharacterised protein family HicB ccrud_RS07210 b0b880c3bab3b85b8919649f5add1402 108 SUPERFAMILY SSF143100 4 68 9.42E-12 T 14-09-2016 ccrud_RS07210 b0b880c3bab3b85b8919649f5add1402 108 SUPERFAMILY SSF47598 69 107 2.28E-7 T 14-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 ccrud_RS11180 a04c454ec6f4de4e4a1a391f1b669426 186 PANTHER PTHR11080:SF2 1 186 2.2E-41 T 14-09-2016 ccrud_RS11180 a04c454ec6f4de4e4a1a391f1b669426 186 PANTHER PTHR11080 1 186 2.2E-41 T 14-09-2016 ccrud_RS11180 a04c454ec6f4de4e4a1a391f1b669426 186 Pfam PF00857 Isochorismatase family 4 186 2.7E-24 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 ccrud_RS11180 a04c454ec6f4de4e4a1a391f1b669426 186 SUPERFAMILY SSF52499 2 186 3.01E-43 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 ccrud_RS11180 a04c454ec6f4de4e4a1a391f1b669426 186 Gene3D G3DSA:3.40.50.850 1 186 5.1E-52 T 14-09-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 ccrud_RS04590 7be76860c0fdbc452b8426aafd5a81c6 543 Pfam PF02720 Domain of unknown function (DUF222) 174 406 4.0E-11 T 14-09-2016 IPR003870 Domain of unknown function DUF222 ccrud_RS00760 1eb2183dc9a337ce873965d8799f2e01 142 Gene3D G3DSA:1.10.340.30 3 105 5.1E-36 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 ccrud_RS00760 1eb2183dc9a337ce873965d8799f2e01 142 SUPERFAMILY SSF48150 2 137 8.75E-40 T 14-09-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 ccrud_RS00760 1eb2183dc9a337ce873965d8799f2e01 142 PANTHER PTHR30037:SF4 1 136 1.1E-39 T 14-09-2016 ccrud_RS00760 1eb2183dc9a337ce873965d8799f2e01 142 PANTHER PTHR30037 1 136 1.1E-39 T 14-09-2016 ccrud_RS00760 1eb2183dc9a337ce873965d8799f2e01 142 Pfam PF03352 Methyladenine glycosylase 3 105 2.1E-34 T 14-09-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 SUPERFAMILY SSF56634 20 511 1.3E-188 T 14-09-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 Pfam PF00199 Catalase 24 404 2.2E-174 T 14-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 PIRSF PIRSF038928 13 516 6.4E-217 T 14-09-2016 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 Pfam PF06628 Catalase-related immune-responsive 450 509 3.0E-16 T 14-09-2016 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 Gene3D G3DSA:2.40.180.10 12 373 1.3E-164 T 14-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 SMART SM01060 24 407 2.4E-252 T 14-09-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 PANTHER PTHR11465 2 510 1.4E-248 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 PRINTS PR00067 Catalase signature 120 137 1.8E-68 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 PRINTS PR00067 Catalase signature 139 157 1.8E-68 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 PRINTS PR00067 Catalase signature 37 60 1.8E-68 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 PRINTS PR00067 Catalase signature 99 117 1.8E-68 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 PRINTS PR00067 Catalase signature 336 362 1.8E-68 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS01360 0bf65e724c94055031f5b49cee62a0b4 517 PRINTS PR00067 Catalase signature 304 331 1.8E-68 T 14-09-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 ccrud_RS06200 1166c20f8db6fdb3cd97980112e53973 174 SUPERFAMILY SSF55961 34 172 7.57E-23 T 14-09-2016 ccrud_RS06200 1166c20f8db6fdb3cd97980112e53973 174 Pfam PF10604 Polyketide cyclase / dehydrase and lipid transport 32 168 6.9E-10 T 14-09-2016 IPR019587 Polyketide cyclase/dehydrase ccrud_RS06200 1166c20f8db6fdb3cd97980112e53973 174 Gene3D G3DSA:3.30.530.20 33 155 3.3E-13 T 14-09-2016 IPR023393 START-like domain ccrud_RS09015 8053ce2ae0380642b612bcf5596bb7bd 94 Gene3D G3DSA:3.30.70.100 5 91 1.2E-24 T 14-09-2016 ccrud_RS09015 8053ce2ae0380642b612bcf5596bb7bd 94 SUPERFAMILY SSF54975 3 92 2.83E-22 T 14-09-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 ccrud_RS09015 8053ce2ae0380642b612bcf5596bb7bd 94 Pfam PF00708 Acylphosphatase 4 68 3.1E-20 T 14-09-2016 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 ccrud_RS09015 8053ce2ae0380642b612bcf5596bb7bd 94 ProSitePatterns PS00150 Acylphosphatase signature 1. 10 20 - T 14-09-2016 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 ccrud_RS09015 8053ce2ae0380642b612bcf5596bb7bd 94 PANTHER PTHR10029 5 67 1.2E-13 T 14-09-2016 ccrud_RS03145 277eab5754523d81370992dff0f03953 129 TIGRFAM TIGR03462 CarR_dom_SF: lycopene cyclase domain 3 92 4.0E-14 T 14-09-2016 IPR017825 Lycopene cyclase domain GO:0016872 KEGG: 00906+2.5.1.32+5.5.1.19|MetaCyc: PWY-5943|MetaCyc: PWY-5947|MetaCyc: PWY-7591|UniPathway: UPA00799|UniPathway: UPA00802 ccrud_RS01300 2a97ab89daa35c3a618844861a5f8156 483 PANTHER PTHR30590 59 459 2.1E-13 T 14-09-2016 ccrud_RS01300 2a97ab89daa35c3a618844861a5f8156 483 Pfam PF07786 Protein of unknown function (DUF1624) 70 268 8.0E-12 T 14-09-2016 IPR012429 Protein of unknown function DUF1624 KEGG: 00531+2.3.1.78 ccrud_RS01300 2a97ab89daa35c3a618844861a5f8156 483 Pfam PF04235 Protein of unknown function (DUF418) 332 439 2.8E-8 T 14-09-2016 IPR007349 Domain of unknown function DUF418 ccrud_RS11480 554b21ff2af42a0fc0948033a0d6a135 282 Gene3D G3DSA:3.20.20.150 3 280 4.2E-42 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11480 554b21ff2af42a0fc0948033a0d6a135 282 SUPERFAMILY SSF51658 20 279 3.16E-31 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11480 554b21ff2af42a0fc0948033a0d6a135 282 Pfam PF01261 Xylose isomerase-like TIM barrel 34 200 2.7E-13 T 14-09-2016 IPR013022 Xylose isomerase-like, TIM barrel domain ccrud_RS11480 554b21ff2af42a0fc0948033a0d6a135 282 PANTHER PTHR40117 1 282 1.1E-45 T 14-09-2016 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PANTHER PTHR22912:SF48 1 315 1.4E-150 T 14-09-2016 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 Gene3D G3DSA:3.50.50.60 120 307 6.9E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PANTHER PTHR22912 1 315 1.4E-150 T 14-09-2016 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 13 313 4.4E-120 T 14-09-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 15 34 4.3E-36 T 14-09-2016 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 4.3E-36 T 14-09-2016 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 4.3E-36 T 14-09-2016 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 4.3E-36 T 14-09-2016 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 112 130 4.3E-36 T 14-09-2016 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 302 3.3E-45 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 Gene3D G3DSA:3.50.50.60 11 119 3.0E-33 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 241 262 7.6E-75 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 150 174 7.6E-75 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 202 218 7.6E-75 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 14 36 7.6E-75 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 135 147 7.6E-75 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 276 294 7.6E-75 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 68 78 7.6E-75 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 47 62 7.6E-75 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 113 121 7.6E-75 T 14-09-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 SUPERFAMILY SSF51905 10 312 4.68E-57 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS13910 d18641f4eeaf51771a6beced185d5f5f 317 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 142 162 - T 14-09-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 ccrud_RS12450 a7d4b36be4286a65004a992bdeb726b7 182 Pfam PF13673 Acetyltransferase (GNAT) domain 97 170 2.9E-12 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS12450 a7d4b36be4286a65004a992bdeb726b7 182 SUPERFAMILY SSF55729 15 170 7.39E-27 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS12450 a7d4b36be4286a65004a992bdeb726b7 182 PANTHER PTHR23091 9 168 1.2E-20 T 14-09-2016 ccrud_RS12450 a7d4b36be4286a65004a992bdeb726b7 182 PANTHER PTHR23091:SF275 9 168 1.2E-20 T 14-09-2016 ccrud_RS12450 a7d4b36be4286a65004a992bdeb726b7 182 Gene3D G3DSA:3.40.630.30 10 169 9.1E-33 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS03230 9d3a62405cbe95e3658e63149cebde59 464 Pfam PF03703 Bacterial PH domain 377 444 3.9E-7 T 14-09-2016 IPR005182 Domain of unknown function DUF304 ccrud_RS03230 9d3a62405cbe95e3658e63149cebde59 464 Pfam PF03703 Bacterial PH domain 78 156 1.1E-17 T 14-09-2016 IPR005182 Domain of unknown function DUF304 ccrud_RS03230 9d3a62405cbe95e3658e63149cebde59 464 Pfam PF03703 Bacterial PH domain 249 304 2.2E-9 T 14-09-2016 IPR005182 Domain of unknown function DUF304 ccrud_RS03230 9d3a62405cbe95e3658e63149cebde59 464 PANTHER PTHR34473:SF1 9 330 1.0E-25 T 14-09-2016 ccrud_RS03230 9d3a62405cbe95e3658e63149cebde59 464 PANTHER PTHR34473 9 330 1.0E-25 T 14-09-2016 ccrud_RS03230 9d3a62405cbe95e3658e63149cebde59 464 PIRSF PIRSF026631 2 457 2.6E-113 T 14-09-2016 IPR014529 Uncharacterised conserved protein UCP026631 ccrud_RS03770 0717b727d3cd6176442e196f1e81f78c 253 TIGRFAM TIGR02569 TIGR02569_actnb: TIGR02569 family protein 3 133 1.1E-66 T 14-09-2016 IPR013402 Conserved hypothetical protein CHP02569 ccrud_RS03770 0717b727d3cd6176442e196f1e81f78c 253 TIGRFAM TIGR02569 TIGR02569_actnb: TIGR02569 family protein 135 243 2.7E-52 T 14-09-2016 IPR013402 Conserved hypothetical protein CHP02569 ccrud_RS04815 066efac76aa6bec06f3ec60d26e3bc6a 180 Pfam PF04977 Septum formation initiator 41 119 1.8E-18 T 14-09-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 ccrud_RS07260 26608d9c5d3a5dde054ff0522924cc38 64 Hamap MF_02106 Prokaryotic ubiquitin-like protein Pup [pup]. 1 64 16.444 T 14-09-2016 IPR008515 Ubiquitin-like, Pup UniPathway: UPA00997 ccrud_RS07260 26608d9c5d3a5dde054ff0522924cc38 64 Pfam PF05639 Pup-like protein 16 64 3.5E-20 T 14-09-2016 IPR008515 Ubiquitin-like, Pup UniPathway: UPA00997 ccrud_RS07260 26608d9c5d3a5dde054ff0522924cc38 64 TIGRFAM TIGR03687 pupylate_cterm: ubiquitin-like protein Pup 32 64 5.3E-22 T 14-09-2016 IPR008515 Ubiquitin-like, Pup UniPathway: UPA00997 ccrud_RS04990 782f67a5e5d838e8d6f588609fe26c23 177 Pfam PF14030 Protein of unknown function (DUF4245) 1 168 1.7E-38 T 14-09-2016 IPR025339 Protein of unknown function DUF4245 ccrud_RS05390 d94c4a6bc7b19bcb22011db898b37781 495 SMART SM00640 13 432 4.3E-35 T 14-09-2016 IPR001362 Glycoside hydrolase, family 32 GO:0004553|GO:0005975 ccrud_RS05390 d94c4a6bc7b19bcb22011db898b37781 495 SUPERFAMILY SSF49899 323 467 5.7E-21 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain ccrud_RS05390 d94c4a6bc7b19bcb22011db898b37781 495 Gene3D G3DSA:2.60.120.560 313 460 1.0E-12 T 14-09-2016 IPR013189 Glycosyl hydrolase family 32, C-terminal ccrud_RS05390 d94c4a6bc7b19bcb22011db898b37781 495 Pfam PF00251 Glycosyl hydrolases family 32 N-terminal domain 13 337 6.4E-19 T 14-09-2016 IPR013148 Glycosyl hydrolase family 32, N-terminal ccrud_RS05390 d94c4a6bc7b19bcb22011db898b37781 495 SUPERFAMILY SSF75005 8 337 1.47E-35 T 14-09-2016 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain ccrud_RS11660 dfd90e1609cfdd30a66584963f7fa47d 125 SUPERFAMILY SSF55718 47 112 5.65E-5 T 14-09-2016 IPR003033 SCP2 sterol-binding domain ccrud_RS10850 06cb6e014fc650113dbb7bd46cbc7302 274 Gene3D G3DSA:3.60.110.10 3 271 1.0E-66 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 ccrud_RS10850 06cb6e014fc650113dbb7bd46cbc7302 274 PANTHER PTHR23088 2 271 2.1E-62 T 14-09-2016 ccrud_RS10850 06cb6e014fc650113dbb7bd46cbc7302 274 Pfam PF00795 Carbon-nitrogen hydrolase 5 237 2.1E-41 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 ccrud_RS10850 06cb6e014fc650113dbb7bd46cbc7302 274 SUPERFAMILY SSF56317 2 271 4.97E-61 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 ccrud_RS01630 a361868ee2598348c328903824361996 384 PANTHER PTHR22935 1 384 5.4E-42 T 14-09-2016 ccrud_RS01630 a361868ee2598348c328903824361996 384 Pfam PF00144 Beta-lactamase 23 372 1.8E-41 T 14-09-2016 IPR001466 Beta-lactamase-related ccrud_RS01630 a361868ee2598348c328903824361996 384 Gene3D G3DSA:3.40.710.10 3 377 1.7E-54 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS01630 a361868ee2598348c328903824361996 384 SUPERFAMILY SSF56601 7 375 1.71E-59 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS08520 82ca87c4f9122fce2f938d30ff6b1d8a 211 SUPERFAMILY SSF109854 20 111 1.65E-6 T 14-09-2016 ccrud_RS08520 82ca87c4f9122fce2f938d30ff6b1d8a 211 TIGRFAM TIGR03085 TIGR03085: TIGR03085 family protein 5 207 1.3E-56 T 14-09-2016 IPR017519 Conserved hypothetical protein CHP03085 ccrud_RS08520 82ca87c4f9122fce2f938d30ff6b1d8a 211 TIGRFAM TIGR03083 TIGR03083: uncharacterized Actinobacterial protein TIGR03083 7 192 1.3E-22 T 14-09-2016 IPR017517 Conserved hypothetical protein CHP03083, actinobacterial-type ccrud_RS04630 ef9ee3b9bd0cc0975eb1aa43a631f575 341 Gene3D G3DSA:3.20.20.70 6 307 1.0E-48 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS04630 ef9ee3b9bd0cc0975eb1aa43a631f575 341 Pfam PF03060 Nitronate monooxygenase 9 337 1.8E-56 T 14-09-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 ccrud_RS04630 ef9ee3b9bd0cc0975eb1aa43a631f575 341 PANTHER PTHR32332 101 339 2.5E-67 T 14-09-2016 ccrud_RS04630 ef9ee3b9bd0cc0975eb1aa43a631f575 341 PANTHER PTHR32332 7 73 2.5E-67 T 14-09-2016 ccrud_RS04630 ef9ee3b9bd0cc0975eb1aa43a631f575 341 SUPERFAMILY SSF51412 6 335 1.39E-43 T 14-09-2016 ccrud_RS04630 ef9ee3b9bd0cc0975eb1aa43a631f575 341 PANTHER PTHR32332:SF12 101 339 2.5E-67 T 14-09-2016 ccrud_RS04630 ef9ee3b9bd0cc0975eb1aa43a631f575 341 PANTHER PTHR32332:SF12 7 73 2.5E-67 T 14-09-2016 ccrud_RS13250 c44834110784b1ac88aafdff41107137 253 PANTHER PTHR23344:SF28 1 237 6.8E-40 T 14-09-2016 ccrud_RS13250 c44834110784b1ac88aafdff41107137 253 Gene3D G3DSA:3.20.20.190 1 239 7.6E-52 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 ccrud_RS13250 c44834110784b1ac88aafdff41107137 253 SUPERFAMILY SSF51695 1 236 4.71E-47 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 ccrud_RS13250 c44834110784b1ac88aafdff41107137 253 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 230 1.9E-24 T 14-09-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 ccrud_RS13250 c44834110784b1ac88aafdff41107137 253 PANTHER PTHR23344 1 237 6.8E-40 T 14-09-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 ccrud_RS13105 abf6e196dbd8ba48059376c90463ccb0 341 PANTHER PTHR10907:SF56 65 327 9.6E-38 T 14-09-2016 ccrud_RS13105 abf6e196dbd8ba48059376c90463ccb0 341 PANTHER PTHR10907 65 327 9.6E-38 T 14-09-2016 ccrud_RS13105 abf6e196dbd8ba48059376c90463ccb0 341 Pfam PF00756 Putative esterase 67 330 3.3E-37 T 14-09-2016 IPR000801 Putative esterase ccrud_RS13105 abf6e196dbd8ba48059376c90463ccb0 341 Gene3D G3DSA:3.40.50.1820 57 339 1.7E-82 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13105 abf6e196dbd8ba48059376c90463ccb0 341 SUPERFAMILY SSF53474 57 336 1.18E-25 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS03360 10ac58f95d1e4c4f7e96ce8cbf3158e1 339 PANTHER PTHR30472 16 336 3.2E-108 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS03360 10ac58f95d1e4c4f7e96ce8cbf3158e1 339 SUPERFAMILY SSF81345 13 329 1.27E-80 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS03360 10ac58f95d1e4c4f7e96ce8cbf3158e1 339 Gene3D G3DSA:1.10.3470.10 9 332 2.3E-103 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS03360 10ac58f95d1e4c4f7e96ce8cbf3158e1 339 PANTHER PTHR30472:SF3 16 336 3.2E-108 T 14-09-2016 ccrud_RS03360 10ac58f95d1e4c4f7e96ce8cbf3158e1 339 Pfam PF01032 FecCD transport family 25 329 8.6E-93 T 14-09-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 ccrud_RS10505 cc55a5dd62333f153564f91aeecfd63b 90 Gene3D G3DSA:1.10.1220.10 37 82 1.6E-5 T 14-09-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 ccrud_RS10505 cc55a5dd62333f153564f91aeecfd63b 90 SUPERFAMILY SSF47598 38 82 1.0E-5 T 14-09-2016 IPR010985 Ribbon-helix-helix GO:0006355 ccrud_RS11230 29efe858cd6e1183804c9abbf8d785e2 394 PANTHER PTHR33744 248 383 3.3E-13 T 14-09-2016 ccrud_RS11230 29efe858cd6e1183804c9abbf8d785e2 394 Pfam PF13556 PucR C-terminal helix-turn-helix domain 332 387 1.1E-15 T 14-09-2016 IPR025736 PucR C-terminal helix-turn-helix domain ccrud_RS07485 9780955a9cc1a543d26e0de18b8d6949 355 TIGRFAM TIGR00109 hemH: ferrochelatase 11 318 2.2E-40 T 14-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 ccrud_RS07485 9780955a9cc1a543d26e0de18b8d6949 355 Gene3D G3DSA:3.40.50.1400 9 163 9.7E-38 T 14-09-2016 ccrud_RS07485 9780955a9cc1a543d26e0de18b8d6949 355 PANTHER PTHR11108 11 319 1.7E-71 T 14-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 ccrud_RS07485 9780955a9cc1a543d26e0de18b8d6949 355 Gene3D G3DSA:3.40.50.1400 164 300 6.0E-44 T 14-09-2016 ccrud_RS07485 9780955a9cc1a543d26e0de18b8d6949 355 Hamap MF_00323 Ferrochelatase [hemH]. 8 320 28.953 T 14-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 ccrud_RS07485 9780955a9cc1a543d26e0de18b8d6949 355 Pfam PF00762 Ferrochelatase 10 319 5.7E-92 T 14-09-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 ccrud_RS07485 9780955a9cc1a543d26e0de18b8d6949 355 SUPERFAMILY SSF53800 10 322 2.94E-75 T 14-09-2016 ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PANTHER PTHR24319 1 232 4.9E-73 T 14-09-2016 ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PANTHER PTHR24319:SF32 1 232 4.9E-73 T 14-09-2016 ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 SUPERFAMILY SSF51735 2 228 6.35E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 Pfam PF00106 short chain dehydrogenase 7 182 3.6E-45 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 Gene3D G3DSA:3.40.50.720 5 230 8.8E-58 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 146 165 3.9E-24 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 3.9E-24 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 167 184 3.9E-24 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 120 136 3.9E-24 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.9E-24 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 133 161 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 134 1.2E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 73 84 1.2E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09700 3b43175e76802a618678067241d0cf73 238 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 146 165 1.2E-9 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS02955 44e4200d0d0a9530d046058ed886ccdd 96 Pfam PF06013 Proteins of 100 residues with WXG 4 86 1.1E-18 T 14-09-2016 IPR010310 Type VII secretion system ESAT-6-like ccrud_RS02955 44e4200d0d0a9530d046058ed886ccdd 96 Gene3D G3DSA:1.10.287.1060 3 95 4.7E-28 T 14-09-2016 ccrud_RS02955 44e4200d0d0a9530d046058ed886ccdd 96 SUPERFAMILY SSF140453 2 95 9.55E-25 T 14-09-2016 IPR010310 Type VII secretion system ESAT-6-like ccrud_RS02955 44e4200d0d0a9530d046058ed886ccdd 96 TIGRFAM TIGR03930 WXG100_ESAT6: WXG100 family type VII secretion target 3 92 8.3E-24 T 14-09-2016 IPR010310 Type VII secretion system ESAT-6-like ccrud_RS13745 ec584472e03a6428b2cbc5edde70d58a 361 PANTHER PTHR22893 1 344 2.0E-154 T 14-09-2016 ccrud_RS13745 ec584472e03a6428b2cbc5edde70d58a 361 PANTHER PTHR22893:SF7 1 344 2.0E-154 T 14-09-2016 ccrud_RS13745 ec584472e03a6428b2cbc5edde70d58a 361 SUPERFAMILY SSF51395 1 348 1.1E-114 T 14-09-2016 ccrud_RS13745 ec584472e03a6428b2cbc5edde70d58a 361 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 343 9.8E-78 T 14-09-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 ccrud_RS13745 ec584472e03a6428b2cbc5edde70d58a 361 Gene3D G3DSA:3.20.20.70 1 347 6.9E-127 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS10275 942537ff18387e9cf107bdf3b66fe8ad 449 PANTHER PTHR33362 1 446 9.1E-17 T 14-09-2016 ccrud_RS10275 942537ff18387e9cf107bdf3b66fe8ad 449 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 4 439 4.9E-88 T 14-09-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 PANTHER PTHR11748 212 554 1.1E-103 T 14-09-2016 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 PANTHER PTHR11748 22 187 1.1E-103 T 14-09-2016 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 Gene3D G3DSA:1.10.45.10 467 506 2.0E-4 T 14-09-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 PANTHER PTHR11748:SF35 212 554 1.1E-103 T 14-09-2016 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 SUPERFAMILY SSF46548 529 621 1.31E-10 T 14-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 Pfam PF02754 Cysteine-rich domain 723 794 0.019 T 14-09-2016 IPR004017 Cysteine-rich domain ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 604 615 - T 14-09-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 SUPERFAMILY SSF56176 22 181 6.54E-48 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 SUPERFAMILY SSF56176 218 254 6.54E-48 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 Pfam PF02913 FAD linked oxidases, C-terminal domain 253 502 1.2E-49 T 14-09-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 Gene3D G3DSA:1.10.1060.10 532 627 1.4E-13 T 14-09-2016 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 Gene3D G3DSA:3.30.43.10 22 98 2.1E-11 T 14-09-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 Pfam PF01565 FAD binding domain 44 181 3.5E-34 T 14-09-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 Pfam PF13183 4Fe-4S dicluster domain 542 618 5.6E-10 T 14-09-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 SUPERFAMILY SSF55103 231 507 5.4E-54 T 14-09-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 Gene3D G3DSA:3.30.465.10 99 254 4.6E-31 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 ccrud_RS10260 66ddcc13c3274493e9ebdaf8d6ffe702 948 PANTHER PTHR11748:SF35 22 187 1.1E-103 T 14-09-2016 ccrud_RS13830 5c8d780aa676c35d5949f8aa77986bfb 245 PANTHER PTHR10264 59 230 9.7E-12 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS13830 5c8d780aa676c35d5949f8aa77986bfb 245 PANTHER PTHR10264:SF83 59 230 9.7E-12 T 14-09-2016 ccrud_RS13830 5c8d780aa676c35d5949f8aa77986bfb 245 Pfam PF01145 SPFH domain / Band 7 family 44 201 1.2E-16 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS13830 5c8d780aa676c35d5949f8aa77986bfb 245 SUPERFAMILY SSF117892 64 191 7.19E-17 T 14-09-2016 IPR001107 Band 7 domain ccrud_RS13830 5c8d780aa676c35d5949f8aa77986bfb 245 PRINTS PR00721 Stomatin signature 161 179 2.7E-7 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS13830 5c8d780aa676c35d5949f8aa77986bfb 245 PRINTS PR00721 Stomatin signature 83 104 2.7E-7 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS13830 5c8d780aa676c35d5949f8aa77986bfb 245 PRINTS PR00721 Stomatin signature 205 228 2.7E-7 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS13830 5c8d780aa676c35d5949f8aa77986bfb 245 PRINTS PR00721 Stomatin signature 118 135 2.7E-7 T 14-09-2016 IPR001972 Stomatin family GO:0016020 ccrud_RS09690 8db26fda61771faf4f968ecb08bbc3fe 482 SUPERFAMILY SSF53720 3 476 1.18E-138 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS09690 8db26fda61771faf4f968ecb08bbc3fe 482 Pfam PF00171 Aldehyde dehydrogenase family 18 471 4.5E-140 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS09690 8db26fda61771faf4f968ecb08bbc3fe 482 Gene3D G3DSA:3.40.605.10 2 263 1.5E-76 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS09690 8db26fda61771faf4f968ecb08bbc3fe 482 Gene3D G3DSA:3.40.309.10 264 447 1.7E-58 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS09690 8db26fda61771faf4f968ecb08bbc3fe 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 248 255 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS09690 8db26fda61771faf4f968ecb08bbc3fe 482 PANTHER PTHR11699 5 481 4.9E-200 T 14-09-2016 ccrud_RS09690 8db26fda61771faf4f968ecb08bbc3fe 482 PANTHER PTHR11699:SF155 5 481 4.9E-200 T 14-09-2016 ccrud_RS13465 ac974f05c8f8f909520d96d3befb6b2f 126 PANTHER PTHR10438 4 120 7.4E-33 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ccrud_RS13465 ac974f05c8f8f909520d96d3befb6b2f 126 PANTHER PTHR10438:SF266 4 120 7.4E-33 T 14-09-2016 ccrud_RS13465 ac974f05c8f8f909520d96d3befb6b2f 126 TIGRFAM TIGR01068 thioredoxin: thioredoxin 7 102 9.4E-29 T 14-09-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 ccrud_RS13465 ac974f05c8f8f909520d96d3befb6b2f 126 PRINTS PR00421 Thioredoxin family signature 68 79 1.4E-7 T 14-09-2016 ccrud_RS13465 ac974f05c8f8f909520d96d3befb6b2f 126 PRINTS PR00421 Thioredoxin family signature 29 38 1.4E-7 T 14-09-2016 ccrud_RS13465 ac974f05c8f8f909520d96d3befb6b2f 126 PRINTS PR00421 Thioredoxin family signature 21 29 1.4E-7 T 14-09-2016 ccrud_RS13465 ac974f05c8f8f909520d96d3befb6b2f 126 Pfam PF00085 Thioredoxin 4 99 2.5E-23 T 14-09-2016 IPR013766 Thioredoxin domain GO:0045454 ccrud_RS13465 ac974f05c8f8f909520d96d3befb6b2f 126 SUPERFAMILY SSF52833 4 103 7.35E-31 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS13465 ac974f05c8f8f909520d96d3befb6b2f 126 Gene3D G3DSA:3.40.30.10 4 102 2.3E-30 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS05410 45cac8310a5639383cdc4382f290a585 213 SUPERFAMILY SSF88659 139 196 2.4E-16 T 14-09-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS05410 45cac8310a5639383cdc4382f290a585 213 PANTHER PTHR30173 13 204 2.1E-58 T 14-09-2016 ccrud_RS05410 45cac8310a5639383cdc4382f290a585 213 SUPERFAMILY SSF88946 40 120 1.02E-22 T 14-09-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS05410 45cac8310a5639383cdc4382f290a585 213 Pfam PF08281 Sigma-70, region 4 141 192 1.4E-16 T 14-09-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS05410 45cac8310a5639383cdc4382f290a585 213 Pfam PF04542 Sigma-70 region 2 43 109 6.4E-20 T 14-09-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS05410 45cac8310a5639383cdc4382f290a585 213 PANTHER PTHR30173:SF18 13 204 2.1E-58 T 14-09-2016 ccrud_RS05410 45cac8310a5639383cdc4382f290a585 213 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 41 194 2.0E-30 T 14-09-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 ccrud_RS05410 45cac8310a5639383cdc4382f290a585 213 Gene3D G3DSA:1.10.1740.10 37 109 4.7E-25 T 14-09-2016 ccrud_RS05410 45cac8310a5639383cdc4382f290a585 213 Gene3D G3DSA:1.10.10.10 139 197 1.0E-22 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 SMART SM01091 357 451 3.0E-12 T 14-09-2016 IPR005170 Transporter-associated domain ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 Pfam PF00571 CBS domain 223 278 8.2E-5 T 14-09-2016 IPR000644 CBS domain ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 Pfam PF01595 Domain of unknown function DUF21 12 204 1.7E-37 T 14-09-2016 IPR002550 Domain of unknown function DUF21 ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 Pfam PF03471 Transporter associated domain 359 449 2.8E-13 T 14-09-2016 IPR005170 Transporter-associated domain ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 PANTHER PTHR22777:SF5 426 460 1.9E-171 T 14-09-2016 ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 PANTHER PTHR22777 1 409 1.9E-171 T 14-09-2016 ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 PANTHER PTHR22777 426 460 1.9E-171 T 14-09-2016 ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 Gene3D G3DSA:3.30.465.10 337 449 1.3E-17 T 14-09-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 PANTHER PTHR22777:SF5 1 409 1.9E-171 T 14-09-2016 ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 Gene3D G3DSA:3.10.580.10 208 336 2.6E-18 T 14-09-2016 ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 SUPERFAMILY SSF54631 210 350 7.58E-27 T 14-09-2016 ccrud_RS07015 a3f458b2ddd9c83e0a3b217ad0f822b8 460 SUPERFAMILY SSF56176 361 458 2.37E-14 T 14-09-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 ccrud_RS13400 db35e8f2d6b342d04e393aedc1012206 87 PANTHER PTHR33884 1 85 7.0E-20 T 14-09-2016 ccrud_RS13400 db35e8f2d6b342d04e393aedc1012206 87 Pfam PF04226 Transglycosylase associated protein 36 85 4.8E-13 T 14-09-2016 IPR007341 Transglycosylase-associated protein GO:0016021 ccrud_RS04790 65e0334bc78d6d71a81d32a181ca9ae5 191 Gene3D G3DSA:1.10.287.1080 84 136 7.7E-9 T 14-09-2016 ccrud_RS04790 65e0334bc78d6d71a81d32a181ca9ae5 191 SUPERFAMILY SSF101386 72 164 2.43E-16 T 14-09-2016 ccrud_RS04790 65e0334bc78d6d71a81d32a181ca9ae5 191 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 91 164 2.2E-25 T 14-09-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core ccrud_RS04790 65e0334bc78d6d71a81d32a181ca9ae5 191 PANTHER PTHR30522 53 188 5.4E-33 T 14-09-2016 ccrud_RS04790 65e0334bc78d6d71a81d32a181ca9ae5 191 PANTHER PTHR30522:SF0 53 188 5.4E-33 T 14-09-2016 IPR011551 NTP pyrophosphohydrolase MazG ccrud_RS04610 5a3139a368059c4841bfccc4db79705a 362 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 45 344 2.6E-102 T 14-09-2016 IPR017778 ABC transporter, urea, permease protein, UrtC ccrud_RS04610 5a3139a368059c4841bfccc4db79705a 362 PANTHER PTHR30482:SF4 45 342 2.7E-78 T 14-09-2016 IPR017778 ABC transporter, urea, permease protein, UrtC ccrud_RS04610 5a3139a368059c4841bfccc4db79705a 362 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 334 1.4E-35 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 ccrud_RS04610 5a3139a368059c4841bfccc4db79705a 362 PANTHER PTHR30482 45 342 2.7E-78 T 14-09-2016 ccrud_RS00840 c4bce9608c2b1e99d5f8c14a045b7f43 296 PANTHER PTHR39193 1 288 1.9E-75 T 14-09-2016 ccrud_RS00840 c4bce9608c2b1e99d5f8c14a045b7f43 296 PANTHER PTHR39193:SF1 1 288 1.9E-75 T 14-09-2016 ccrud_RS00840 c4bce9608c2b1e99d5f8c14a045b7f43 296 Gene3D G3DSA:2.60.120.10 17 117 1.8E-23 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS00840 c4bce9608c2b1e99d5f8c14a045b7f43 296 PIRSF PIRSF036628 1 280 1.9E-99 T 14-09-2016 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30|UniPathway: UPA00076 ccrud_RS00840 c4bce9608c2b1e99d5f8c14a045b7f43 296 Gene3D G3DSA:2.60.120.10 118 280 4.3E-61 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS00840 c4bce9608c2b1e99d5f8c14a045b7f43 296 SUPERFAMILY SSF51182 2 263 1.42E-54 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS00840 c4bce9608c2b1e99d5f8c14a045b7f43 296 TIGRFAM TIGR04378 myo_inos_iolB: 5-deoxy-glucuronate isomerase 19 275 4.2E-75 T 14-09-2016 IPR024203 5-deoxy-glucuronate isomerase, IolB GO:0008880|GO:0019310 KEGG: 00562+5.3.1.30|UniPathway: UPA00076 ccrud_RS00840 c4bce9608c2b1e99d5f8c14a045b7f43 296 Pfam PF04962 KduI/IolB family 5 274 8.8E-87 T 14-09-2016 IPR021120 KduI/IolB isomerase GO:0016861 KEGG: 00040+5.3.1.17|MetaCyc: PWY-6507|UniPathway: UPA00545 ccrud_RS09875 5a182f96ff47539d7adc3e166c3797c7 218 Gene3D G3DSA:1.10.150.240 20 76 5.5E-15 T 14-09-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 ccrud_RS09875 5a182f96ff47539d7adc3e166c3797c7 218 SUPERFAMILY SSF56784 5 216 3.28E-44 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS09875 5a182f96ff47539d7adc3e166c3797c7 218 PANTHER PTHR18901:SF23 5 214 2.2E-51 T 14-09-2016 ccrud_RS09875 5a182f96ff47539d7adc3e166c3797c7 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 9 187 3.1E-27 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS09875 5a182f96ff47539d7adc3e166c3797c7 218 PANTHER PTHR18901 5 214 2.2E-51 T 14-09-2016 ccrud_RS09875 5a182f96ff47539d7adc3e166c3797c7 218 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 87 181 8.4E-10 T 14-09-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 ccrud_RS09875 5a182f96ff47539d7adc3e166c3797c7 218 Gene3D G3DSA:3.40.50.1000 77 214 5.3E-35 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS07475 d733f74570e3a34b2782b2c5fd1d6315 281 Pfam PF11296 Protein of unknown function (DUF3097) 7 270 1.9E-117 T 14-09-2016 IPR021447 Protein of unknown function DUF3097 ccrud_RS13875 a9b921cd94cbbf3298e8757afa2f6b0b 237 PANTHER PTHR34979 1 233 2.0E-40 T 14-09-2016 ccrud_RS13875 a9b921cd94cbbf3298e8757afa2f6b0b 237 Pfam PF03591 AzlC protein 19 155 4.5E-39 T 14-09-2016 IPR011606 Branched-chain amino acid transport, permease ccrud_RS02845 b2c9a054854a91ee749fc90767491bb4 249 Pfam PF03734 L,D-transpeptidase catalytic domain 143 248 9.6E-14 T 14-09-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 ccrud_RS02845 b2c9a054854a91ee749fc90767491bb4 249 SUPERFAMILY SSF141523 143 249 2.22E-24 T 14-09-2016 ccrud_RS02845 b2c9a054854a91ee749fc90767491bb4 249 Gene3D G3DSA:2.40.440.10 142 249 1.2E-17 T 14-09-2016 ccrud_RS02845 b2c9a054854a91ee749fc90767491bb4 249 PANTHER PTHR30582 143 249 1.3E-18 T 14-09-2016 ccrud_RS11665 8bc56b0e25060a3f9c7f95c38c746f87 335 Pfam PF03061 Thioesterase superfamily 191 264 7.3E-16 T 14-09-2016 IPR006683 Thioesterase domain ccrud_RS11665 8bc56b0e25060a3f9c7f95c38c746f87 335 Pfam PF03061 Thioesterase superfamily 36 105 4.5E-12 T 14-09-2016 IPR006683 Thioesterase domain ccrud_RS11665 8bc56b0e25060a3f9c7f95c38c746f87 335 PANTHER PTHR11049 36 319 6.2E-36 T 14-09-2016 ccrud_RS11665 8bc56b0e25060a3f9c7f95c38c746f87 335 SUPERFAMILY SSF54637 13 160 1.22E-30 T 14-09-2016 IPR029069 HotDog domain ccrud_RS11665 8bc56b0e25060a3f9c7f95c38c746f87 335 SUPERFAMILY SSF54637 175 319 2.73E-30 T 14-09-2016 IPR029069 HotDog domain ccrud_RS11665 8bc56b0e25060a3f9c7f95c38c746f87 335 Gene3D G3DSA:3.10.129.10 11 151 1.5E-35 T 14-09-2016 IPR029069 HotDog domain ccrud_RS11665 8bc56b0e25060a3f9c7f95c38c746f87 335 Gene3D G3DSA:3.10.129.10 176 310 1.0E-32 T 14-09-2016 IPR029069 HotDog domain ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 SMART SM00849 174 368 1.7E-20 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 Hamap MF_01491 Ribonuclease J [rnj]. 157 706 40.676 T 14-09-2016 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 515 557 6.3E-9 T 14-09-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 PANTHER PTHR11203:SF22 153 725 8.6E-199 T 14-09-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 PANTHER PTHR11203 153 725 8.6E-199 T 14-09-2016 ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 SUPERFAMILY SSF56281 162 577 3.28E-85 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 Gene3D G3DSA:3.60.15.10 161 407 1.4E-71 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 163 703 3.3E-145 T 14-09-2016 IPR004613 Ribonuclease J GO:0003723|GO:0046872 ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 517 545 - T 14-09-2016 IPR001587 Ribonuclease J, conserved site ccrud_RS08550 a16513cc235297bb651714c370cb38aa 725 Pfam PF12706 Beta-lactamase superfamily domain 213 320 2.3E-10 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS12355 6ffc15f9f873e52d7bcac8a6ca7e360d 376 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 13 293 1.3E-65 T 14-09-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 ccrud_RS12355 6ffc15f9f873e52d7bcac8a6ca7e360d 376 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 376 96.912 T 14-09-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 ccrud_RS12355 6ffc15f9f873e52d7bcac8a6ca7e360d 376 PANTHER PTHR36510:SF1 1 371 8.1E-132 T 14-09-2016 ccrud_RS12355 6ffc15f9f873e52d7bcac8a6ca7e360d 376 PANTHER PTHR36510 1 371 8.1E-132 T 14-09-2016 ccrud_RS12355 6ffc15f9f873e52d7bcac8a6ca7e360d 376 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 12 298 8.5E-119 T 14-09-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 ccrud_RS12355 6ffc15f9f873e52d7bcac8a6ca7e360d 376 SUPERFAMILY SSF55931 3 368 1.96E-115 T 14-09-2016 ccrud_RS05750 490ed7b9e95c75860e9b25c69468c665 162 Pfam PF00994 Probable molybdopterin binding domain 12 155 2.3E-25 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS05750 490ed7b9e95c75860e9b25c69468c665 162 PANTHER PTHR10192 1 162 7.2E-23 T 14-09-2016 ccrud_RS05750 490ed7b9e95c75860e9b25c69468c665 162 Gene3D G3DSA:3.40.980.10 6 160 2.5E-33 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS05750 490ed7b9e95c75860e9b25c69468c665 162 SMART SM00852 11 158 7.7E-12 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS05750 490ed7b9e95c75860e9b25c69468c665 162 SUPERFAMILY SSF53218 9 160 5.37E-29 T 14-09-2016 IPR001453 MoaB/Mog domain ccrud_RS05750 490ed7b9e95c75860e9b25c69468c665 162 PANTHER PTHR10192:SF5 1 162 7.2E-23 T 14-09-2016 ccrud_RS12620 5b90ad05c7429f018a8c48675a646216 185 SUPERFAMILY SSF53167 19 179 1.31E-23 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 ccrud_RS12620 5b90ad05c7429f018a8c48675a646216 185 Gene3D G3DSA:3.40.50.1580 18 183 1.7E-25 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 ccrud_RS12620 5b90ad05c7429f018a8c48675a646216 185 Pfam PF01048 Phosphorylase superfamily 23 172 7.5E-12 T 14-09-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 ccrud_RS03930 96f30c3171722bee5ad62fecf1c5a7cd 70 Pfam PF12728 Helix-turn-helix domain 14 58 1.6E-8 T 14-09-2016 ccrud_RS03930 96f30c3171722bee5ad62fecf1c5a7cd 70 SUPERFAMILY SSF46955 12 59 6.41E-7 T 14-09-2016 IPR009061 Putative DNA-binding domain ccrud_RS03930 96f30c3171722bee5ad62fecf1c5a7cd 70 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 14 58 3.8E-10 T 14-09-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 ccrud_RS00325 c02685a257c3c37ea6a0af69da0cd454 231 PANTHER PTHR36122:SF1 19 227 8.7E-37 T 14-09-2016 ccrud_RS00325 c02685a257c3c37ea6a0af69da0cd454 231 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 21 216 1.8E-14 T 14-09-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 ccrud_RS00325 c02685a257c3c37ea6a0af69da0cd454 231 PANTHER PTHR36122 19 227 8.7E-37 T 14-09-2016 ccrud_RS00325 c02685a257c3c37ea6a0af69da0cd454 231 Pfam PF04973 Nicotinamide mononucleotide transporter 21 212 1.6E-50 T 14-09-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 ccrud_RS05865 83ca2e325750b82083443ff167cea749 230 SUPERFAMILY SSF52980 112 217 3.49E-5 T 14-09-2016 IPR011335 Restriction endonuclease type II-like ccrud_RS05865 83ca2e325750b82083443ff167cea749 230 Hamap MF_00722 Endonuclease NucS [nucS]. 1 222 32.547 T 14-09-2016 IPR002793 Endonuclease NucS ccrud_RS05865 83ca2e325750b82083443ff167cea749 230 PANTHER PTHR38814 1 230 4.1E-142 T 14-09-2016 ccrud_RS05865 83ca2e325750b82083443ff167cea749 230 Gene3D G3DSA:3.40.1350.10 143 216 5.5E-5 T 14-09-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 ccrud_RS05865 83ca2e325750b82083443ff167cea749 230 PANTHER PTHR38814:SF2 1 230 4.1E-142 T 14-09-2016 ccrud_RS05865 83ca2e325750b82083443ff167cea749 230 Pfam PF01939 Protein of unknown function DUF91 2 230 1.3E-82 T 14-09-2016 IPR002793 Endonuclease NucS ccrud_RS11735 c373b955902e395300f5eab050202ddf 136 SUPERFAMILY SSF54197 4 134 2.63E-31 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 ccrud_RS11735 c373b955902e395300f5eab050202ddf 136 Pfam PF01230 HIT domain 11 101 2.0E-15 T 14-09-2016 IPR001310 Histidine triad (HIT) protein ccrud_RS11735 c373b955902e395300f5eab050202ddf 136 Gene3D G3DSA:3.30.428.10 3 132 6.2E-27 T 14-09-2016 IPR011146 HIT-like domain GO:0003824 ccrud_RS11735 c373b955902e395300f5eab050202ddf 136 PANTHER PTHR23089 4 132 1.1E-21 T 14-09-2016 IPR001310 Histidine triad (HIT) protein ccrud_RS11735 c373b955902e395300f5eab050202ddf 136 PRINTS PR00332 Histidine triad family signature 25 43 4.0E-11 T 14-09-2016 IPR001310 Histidine triad (HIT) protein ccrud_RS11735 c373b955902e395300f5eab050202ddf 136 PRINTS PR00332 Histidine triad family signature 87 97 4.0E-11 T 14-09-2016 IPR001310 Histidine triad (HIT) protein ccrud_RS11735 c373b955902e395300f5eab050202ddf 136 PRINTS PR00332 Histidine triad family signature 4 20 4.0E-11 T 14-09-2016 IPR001310 Histidine triad (HIT) protein ccrud_RS12235 d149b7690172b3672d3472a786a4385f 526 PANTHER PTHR11699 1 525 1.1E-198 T 14-09-2016 ccrud_RS12235 d149b7690172b3672d3472a786a4385f 526 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 262 269 - T 14-09-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 ccrud_RS12235 d149b7690172b3672d3472a786a4385f 526 Gene3D G3DSA:3.40.605.10 34 274 2.2E-68 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS12235 d149b7690172b3672d3472a786a4385f 526 PANTHER PTHR11699:SF202 1 525 1.1E-198 T 14-09-2016 ccrud_RS12235 d149b7690172b3672d3472a786a4385f 526 SUPERFAMILY SSF53720 34 492 2.23E-132 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS12235 d149b7690172b3672d3472a786a4385f 526 Pfam PF00171 Aldehyde dehydrogenase family 34 489 2.0E-139 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS12235 d149b7690172b3672d3472a786a4385f 526 Gene3D G3DSA:3.40.309.10 275 453 9.7E-60 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 SUPERFAMILY SSF52788 9 158 4.45E-38 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 12 29 3.6E-18 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 88 103 3.6E-18 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 55 71 3.6E-18 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 129 144 3.6E-18 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 PANTHER PTHR11717 1 156 5.3E-31 T 14-09-2016 ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 12 155 1.7E-35 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 Gene3D G3DSA:3.40.50.270 10 161 3.0E-42 T 14-09-2016 ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 PANTHER PTHR11717:SF7 1 156 5.3E-31 T 14-09-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 ccrud_RS09880 0d5a6ee5dd9b1249ce645a5bfa5938ec 166 SMART SM00226 10 157 5.5E-37 T 14-09-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 PRINTS PR00146 Dihydrodipicolinate synthase signature 107 123 9.8E-13 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 PRINTS PR00146 Dihydrodipicolinate synthase signature 75 93 9.8E-13 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 PRINTS PR00146 Dihydrodipicolinate synthase signature 133 150 9.8E-13 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 9.8E-13 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 Gene3D G3DSA:3.20.20.70 2 307 1.9E-82 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 Pfam PF00701 Dihydrodipicolinate synthetase family 6 306 3.7E-50 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 PIRSF PIRSF001365 1 311 5.9E-74 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 SMART SM01130 5 309 7.3E-84 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 SUPERFAMILY SSF51569 6 307 2.83E-74 T 14-09-2016 ccrud_RS11940 22d982b320b68b29acdf0158d5388d54 312 PANTHER PTHR12128 1 310 2.4E-65 T 14-09-2016 IPR002220 DapA-like GO:0008152|GO:0016829 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 SUPERFAMILY SSF54913 209 279 1.56E-20 T 14-09-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 Gene3D G3DSA:3.40.190.10 1 106 7.8E-35 T 14-09-2016 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 Pfam PF08029 HisG, C-terminal domain 206 277 1.4E-25 T 14-09-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 TIGRFAM TIGR03455 HisG_C-term: ATP phosphoribosyltransferase, C-terminal domain 190 277 6.2E-30 T 14-09-2016 IPR013115 Histidine biosynthesis HisG, C-terminal GO:0000105|GO:0000287|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 Gene3D G3DSA:3.40.190.10 107 174 2.1E-27 T 14-09-2016 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 Gene3D G3DSA:3.30.70.120 210 274 7.1E-26 T 14-09-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 PANTHER PTHR21403 1 280 9.2E-94 T 14-09-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 Hamap MF_00079 ATP phosphoribosyltransferase [hisG]. 1 281 32.445 T 14-09-2016 IPR020621 ATP phosphoribosyltransferase HisG, long form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 SUPERFAMILY SSF53850 1 206 6.45E-65 T 14-09-2016 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 182 7.2E-53 T 14-09-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 Pfam PF01634 ATP phosphoribosyltransferase 49 201 1.4E-41 T 14-09-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 141 162 - T 14-09-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 ccrud_RS07305 072c149720084fed43e7b02d4122d547 281 PANTHER PTHR21403:SF0 1 280 9.2E-94 T 14-09-2016 ccrud_RS13345 319da54d23acce9669ce14dd9842c85f 401 SUPERFAMILY SSF103473 13 396 8.89E-57 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13345 319da54d23acce9669ce14dd9842c85f 401 PANTHER PTHR23501:SF11 2 399 1.5E-102 T 14-09-2016 ccrud_RS13345 319da54d23acce9669ce14dd9842c85f 401 Gene3D G3DSA:1.20.1250.20 19 201 7.6E-28 T 14-09-2016 ccrud_RS13345 319da54d23acce9669ce14dd9842c85f 401 Gene3D G3DSA:1.20.1250.20 219 394 6.2E-13 T 14-09-2016 ccrud_RS13345 319da54d23acce9669ce14dd9842c85f 401 PANTHER PTHR23501 2 399 1.5E-102 T 14-09-2016 ccrud_RS13345 319da54d23acce9669ce14dd9842c85f 401 Pfam PF07690 Major Facilitator Superfamily 27 327 4.9E-33 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS01115 1b8a60144800b6c0c701aae7415c5151 152 Gene3D G3DSA:3.90.1170.40 20 150 1.6E-37 T 14-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS01115 1b8a60144800b6c0c701aae7415c5151 152 PANTHER PTHR23404:SF2 20 150 1.8E-25 T 14-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS01115 1b8a60144800b6c0c701aae7415c5151 152 SUPERFAMILY SSF54690 37 150 5.75E-36 T 14-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS01115 1b8a60144800b6c0c701aae7415c5151 152 PANTHER PTHR23404 20 150 1.8E-25 T 14-09-2016 ccrud_RS01115 1b8a60144800b6c0c701aae7415c5151 152 Pfam PF02391 MoaE protein 31 132 3.3E-27 T 14-09-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 ccrud_RS11270 f2106d1331da8696a504379db3750bd2 255 Pfam PF12706 Beta-lactamase superfamily domain 36 223 3.9E-14 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS11270 f2106d1331da8696a504379db3750bd2 255 Gene3D G3DSA:3.60.15.10 1 253 4.0E-46 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS11270 f2106d1331da8696a504379db3750bd2 255 SUPERFAMILY SSF56281 1 254 4.48E-45 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS11270 f2106d1331da8696a504379db3750bd2 255 PANTHER PTHR12553 1 255 3.1E-39 T 14-09-2016 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 PANTHER PTHR11655 1 178 6.3E-82 T 14-09-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 SUPERFAMILY SSF56053 1 82 2.49E-26 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 Pfam PF00347 Ribosomal protein L6 90 164 1.1E-15 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 Pfam PF00347 Ribosomal protein L6 11 82 2.7E-18 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 PIRSF PIRSF002162 1 177 1.1E-45 T 14-09-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 36.027 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 Gene3D G3DSA:3.90.930.12 83 177 4.9E-36 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 Gene3D G3DSA:3.90.930.12 2 82 3.1E-30 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 PRINTS PR00059 Ribosomal protein L6 signature 99 115 7.2E-30 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 PRINTS PR00059 Ribosomal protein L6 signature 141 162 7.2E-30 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 PRINTS PR00059 Ribosomal protein L6 signature 71 96 7.2E-30 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 PANTHER PTHR11655:SF14 1 178 6.3E-82 T 14-09-2016 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 SUPERFAMILY SSF56053 83 177 7.46E-34 T 14-09-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS02760 9e3919e0528a7acd11196e94106aab22 178 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 1.8E-71 T 14-09-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 PANTHER PTHR30477:SF1 17 286 1.7E-20 T 14-09-2016 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 PRINTS PR00691 Adhesin B signature 149 168 3.7E-6 T 14-09-2016 IPR006129 Adhesin B GO:0007155 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 PRINTS PR00691 Adhesin B signature 67 85 3.7E-6 T 14-09-2016 IPR006129 Adhesin B GO:0007155 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 PRINTS PR00691 Adhesin B signature 42 63 3.7E-6 T 14-09-2016 IPR006129 Adhesin B GO:0007155 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 PRINTS PR00691 Adhesin B signature 86 105 3.7E-6 T 14-09-2016 IPR006129 Adhesin B GO:0007155 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 PANTHER PTHR30477 17 286 1.7E-20 T 14-09-2016 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 Gene3D G3DSA:3.40.50.1980 234 310 4.8E-6 T 14-09-2016 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 PRINTS PR00690 Adhesin family signature 86 103 2.9E-6 T 14-09-2016 IPR006128 Adhesion lipoprotein GO:0007155 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 PRINTS PR00690 Adhesin family signature 73 86 2.9E-6 T 14-09-2016 IPR006128 Adhesion lipoprotein GO:0007155 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 PRINTS PR00690 Adhesin family signature 42 60 2.9E-6 T 14-09-2016 IPR006128 Adhesion lipoprotein GO:0007155 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 Pfam PF01297 Zinc-uptake complex component A periplasmic 45 309 4.3E-33 T 14-09-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 Gene3D G3DSA:3.40.50.1980 31 179 1.2E-30 T 14-09-2016 ccrud_RS11870 38495b752fe699fed48f1321c83c5cdc 314 SUPERFAMILY SSF53807 26 310 4.61E-40 T 14-09-2016 ccrud_RS07295 b4746fc0eeaa500edaebca2919d2d55b 403 Pfam PF07690 Major Facilitator Superfamily 28 250 2.4E-27 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS07295 b4746fc0eeaa500edaebca2919d2d55b 403 PANTHER PTHR23531 9 400 8.9E-67 T 14-09-2016 ccrud_RS07295 b4746fc0eeaa500edaebca2919d2d55b 403 Gene3D G3DSA:1.20.1250.20 22 201 1.9E-31 T 14-09-2016 ccrud_RS07295 b4746fc0eeaa500edaebca2919d2d55b 403 Gene3D G3DSA:1.20.1250.20 222 398 1.2E-24 T 14-09-2016 ccrud_RS07295 b4746fc0eeaa500edaebca2919d2d55b 403 SUPERFAMILY SSF103473 23 401 9.68E-61 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS07295 b4746fc0eeaa500edaebca2919d2d55b 403 PANTHER PTHR23531:SF1 9 400 8.9E-67 T 14-09-2016 ccrud_RS12510 6901f365a14060b2e40483d30b01d33d 184 Gene3D G3DSA:3.40.50.2020 10 181 4.5E-57 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS12510 6901f365a14060b2e40483d30b01d33d 184 Pfam PF00156 Phosphoribosyl transferase domain 49 164 5.4E-13 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 ccrud_RS12510 6901f365a14060b2e40483d30b01d33d 184 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 21 181 4.0E-38 T 14-09-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS12510 6901f365a14060b2e40483d30b01d33d 184 PANTHER PTHR19278 6 181 5.4E-60 T 14-09-2016 ccrud_RS12510 6901f365a14060b2e40483d30b01d33d 184 SUPERFAMILY SSF53271 12 181 5.24E-38 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS12510 6901f365a14060b2e40483d30b01d33d 184 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 184 26.881 T 14-09-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 ccrud_RS01180 d2116a83fc270aa1a086afbf8cb98ceb 527 Pfam PF00939 Sodium:sulfate symporter transmembrane region 68 523 8.3E-85 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS01180 d2116a83fc270aa1a086afbf8cb98ceb 527 TIGRFAM TIGR00785 dass: transporter, divalent anion:Na+ symporter (DASS) family 72 516 6.0E-94 T 14-09-2016 IPR001898 Sodium/sulphate symporter GO:0005215|GO:0006814|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS01180 d2116a83fc270aa1a086afbf8cb98ceb 527 PANTHER PTHR10283 24 53 1.8E-150 T 14-09-2016 ccrud_RS01180 d2116a83fc270aa1a086afbf8cb98ceb 527 PANTHER PTHR10283 69 526 1.8E-150 T 14-09-2016 ccrud_RS01180 d2116a83fc270aa1a086afbf8cb98ceb 527 PANTHER PTHR10283:SF82 24 53 1.8E-150 T 14-09-2016 ccrud_RS01180 d2116a83fc270aa1a086afbf8cb98ceb 527 PANTHER PTHR10283:SF82 69 526 1.8E-150 T 14-09-2016 ccrud_RS01195 129e0758ab32e3eb8601a9539ad26226 164 TIGRFAM TIGR03941 tRNA_deam_assoc: putative tRNA adenosine deaminase-associated protein 9 160 5.1E-54 T 14-09-2016 IPR023869 tRNA adenosine deaminase-associated protein, putative ccrud_RS03975 cbdcaaabe1018783fb0a99930a08e1c5 337 Gene3D G3DSA:3.40.50.1980 174 332 6.9E-23 T 14-09-2016 ccrud_RS03975 cbdcaaabe1018783fb0a99930a08e1c5 337 Gene3D G3DSA:3.40.50.1980 44 172 5.7E-15 T 14-09-2016 ccrud_RS03975 cbdcaaabe1018783fb0a99930a08e1c5 337 PANTHER PTHR30532 1 334 2.1E-60 T 14-09-2016 ccrud_RS03975 cbdcaaabe1018783fb0a99930a08e1c5 337 PANTHER PTHR30532:SF4 1 334 2.1E-60 T 14-09-2016 ccrud_RS03975 cbdcaaabe1018783fb0a99930a08e1c5 337 Pfam PF01497 Periplasmic binding protein 62 311 4.1E-37 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 ccrud_RS03975 cbdcaaabe1018783fb0a99930a08e1c5 337 SUPERFAMILY SSF53807 54 332 1.92E-40 T 14-09-2016 ccrud_RS03250 ee91fd3ff342f83cbc7a182d23572272 162 SUPERFAMILY SSF53927 2 111 1.1E-23 T 14-09-2016 IPR016193 Cytidine deaminase-like GO:0003824 ccrud_RS03250 ee91fd3ff342f83cbc7a182d23572272 162 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 5 102 5.8E-8 T 14-09-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 ccrud_RS03250 ee91fd3ff342f83cbc7a182d23572272 162 Gene3D G3DSA:3.40.140.10 2 116 1.8E-24 T 14-09-2016 ccrud_RS02460 e9bf16c8cc38b9c74157ad71ec80a8cc 350 PANTHER PTHR12001:SF47 38 350 1.1E-88 T 14-09-2016 ccrud_RS02460 e9bf16c8cc38b9c74157ad71ec80a8cc 350 PANTHER PTHR12001 38 350 1.1E-88 T 14-09-2016 IPR017446 Polyprenyl synthetase-related ccrud_RS02460 e9bf16c8cc38b9c74157ad71ec80a8cc 350 Pfam PF00348 Polyprenyl synthetase 63 301 5.0E-59 T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 ccrud_RS02460 e9bf16c8cc38b9c74157ad71ec80a8cc 350 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 230 242 - T 14-09-2016 IPR000092 Polyprenyl synthetase GO:0008299 ccrud_RS02460 e9bf16c8cc38b9c74157ad71ec80a8cc 350 SUPERFAMILY SSF48576 34 348 7.34E-83 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS02460 e9bf16c8cc38b9c74157ad71ec80a8cc 350 Gene3D G3DSA:1.10.600.10 34 348 6.6E-88 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS03325 cac760939b238701df5a48490f0d9eee 355 PANTHER PTHR30532:SF7 1 352 2.1E-58 T 14-09-2016 ccrud_RS03325 cac760939b238701df5a48490f0d9eee 355 Gene3D G3DSA:3.40.50.1980 69 197 2.2E-21 T 14-09-2016 ccrud_RS03325 cac760939b238701df5a48490f0d9eee 355 Pfam PF01497 Periplasmic binding protein 73 326 3.2E-41 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 ccrud_RS03325 cac760939b238701df5a48490f0d9eee 355 PANTHER PTHR30532 1 352 2.1E-58 T 14-09-2016 ccrud_RS03325 cac760939b238701df5a48490f0d9eee 355 Gene3D G3DSA:3.40.50.1980 198 350 2.4E-14 T 14-09-2016 ccrud_RS03325 cac760939b238701df5a48490f0d9eee 355 SUPERFAMILY SSF53807 55 345 8.63E-44 T 14-09-2016 ccrud_RS07510 1d362d2ed64d99b7c0520d1f365556af 253 Pfam PF04204 Homoserine O-succinyltransferase 50 192 9.9E-5 T 14-09-2016 IPR005697 Homoserine O-succinyltransferase GO:0005737|GO:0008899|GO:0019281 KEGG: 00270+2.3.1.46|KEGG: 00920+2.3.1.46|UniPathway: UPA00051 ccrud_RS07510 1d362d2ed64d99b7c0520d1f365556af 253 SUPERFAMILY SSF52317 43 238 1.01E-38 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS07510 1d362d2ed64d99b7c0520d1f365556af 253 Gene3D G3DSA:3.40.50.880 49 235 1.3E-20 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS07165 1e9267bf468f8f04355d8fbf5650203f 251 SMART SM00867 79 250 2.2E-16 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ccrud_RS07165 1e9267bf468f8f04355d8fbf5650203f 251 Pfam PF04264 YceI-like domain 107 248 2.9E-20 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ccrud_RS07165 1e9267bf468f8f04355d8fbf5650203f 251 Gene3D G3DSA:2.40.128.110 89 251 3.8E-25 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ccrud_RS07165 1e9267bf468f8f04355d8fbf5650203f 251 SUPERFAMILY SSF101874 110 250 4.84E-23 T 14-09-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like ccrud_RS05065 100a53ff7f3b0fbf785b81bb81f2d91f 143 Pfam PF08877 MepB protein 22 141 1.3E-39 T 14-09-2016 IPR011235 MepB-like ccrud_RS05065 100a53ff7f3b0fbf785b81bb81f2d91f 143 PANTHER PTHR41289 9 143 3.8E-16 T 14-09-2016 ccrud_RS05065 100a53ff7f3b0fbf785b81bb81f2d91f 143 PIRSF PIRSF032285 3 143 1.2E-43 T 14-09-2016 IPR011235 MepB-like ccrud_RS12030 a346c90a277a9eceaa983c77d733fc1b 206 SUPERFAMILY SSF53056 7 199 6.28E-50 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ccrud_RS12030 a346c90a277a9eceaa983c77d733fc1b 206 PANTHER PTHR11002:SF17 9 199 7.4E-63 T 14-09-2016 ccrud_RS12030 a346c90a277a9eceaa983c77d733fc1b 206 Pfam PF00484 Carbonic anhydrase 50 197 9.2E-37 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ccrud_RS12030 a346c90a277a9eceaa983c77d733fc1b 206 SMART SM00947 43 202 1.2E-48 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ccrud_RS12030 a346c90a277a9eceaa983c77d733fc1b 206 PANTHER PTHR11002 9 199 7.4E-63 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ccrud_RS12030 a346c90a277a9eceaa983c77d733fc1b 206 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 92 112 - T 14-09-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ccrud_RS12030 a346c90a277a9eceaa983c77d733fc1b 206 Gene3D G3DSA:3.40.1050.10 8 199 4.7E-48 T 14-09-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 ccrud_RS05905 85017eee9e3228022c08dc42e823b49c 387 Gene3D G3DSA:3.40.50.150 76 166 4.9E-6 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS05905 85017eee9e3228022c08dc42e823b49c 387 SUPERFAMILY SSF53335 88 190 2.0E-7 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS10160 3e48e3a40b978cdb155e5e7a69383374 678 Gene3D G3DSA:1.20.1050.40 15 139 1.5E-15 T 14-09-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal ccrud_RS10160 3e48e3a40b978cdb155e5e7a69383374 678 Pfam PF01432 Peptidase family M3 229 673 1.0E-103 T 14-09-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 ccrud_RS10160 3e48e3a40b978cdb155e5e7a69383374 678 PANTHER PTHR11804 1 675 9.7E-252 T 14-09-2016 ccrud_RS10160 3e48e3a40b978cdb155e5e7a69383374 678 Gene3D G3DSA:1.10.1370.10 141 338 1.5E-95 T 14-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 ccrud_RS10160 3e48e3a40b978cdb155e5e7a69383374 678 Gene3D G3DSA:1.10.1370.10 490 674 1.5E-95 T 14-09-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 ccrud_RS10160 3e48e3a40b978cdb155e5e7a69383374 678 Gene3D G3DSA:3.40.390.10 347 489 6.2E-43 T 14-09-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 ccrud_RS10160 3e48e3a40b978cdb155e5e7a69383374 678 SUPERFAMILY SSF55486 11 673 6.11E-143 T 14-09-2016 ccrud_RS10160 3e48e3a40b978cdb155e5e7a69383374 678 PANTHER PTHR11804:SF47 1 675 9.7E-252 T 14-09-2016 ccrud_RS08680 c7f8f5de0aa7fc10de523994ab2e3be6 248 SMART SM00327 68 246 9.3E-18 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS08680 c7f8f5de0aa7fc10de523994ab2e3be6 248 PANTHER PTHR35023:SF1 53 230 4.6E-14 T 14-09-2016 ccrud_RS08680 c7f8f5de0aa7fc10de523994ab2e3be6 248 Pfam PF13519 von Willebrand factor type A domain 72 179 1.0E-16 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS08680 c7f8f5de0aa7fc10de523994ab2e3be6 248 SUPERFAMILY SSF53300 72 237 1.15E-22 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS08680 c7f8f5de0aa7fc10de523994ab2e3be6 248 Gene3D G3DSA:3.40.50.410 72 183 7.0E-16 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS08680 c7f8f5de0aa7fc10de523994ab2e3be6 248 PANTHER PTHR35023 53 230 4.6E-14 T 14-09-2016 ccrud_RS13525 b76d476272c667384eb3c05635afdadf 157 Pfam PF01047 MarR family 37 95 1.7E-12 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS13525 b76d476272c667384eb3c05635afdadf 157 PANTHER PTHR33164 11 154 5.3E-18 T 14-09-2016 ccrud_RS13525 b76d476272c667384eb3c05635afdadf 157 Gene3D G3DSA:1.10.10.10 6 141 8.1E-28 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13525 b76d476272c667384eb3c05635afdadf 157 SUPERFAMILY SSF46785 8 142 3.43E-26 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS13525 b76d476272c667384eb3c05635afdadf 157 SMART SM00347 30 130 8.6E-17 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS03680 96cc71c39f47f46827932b61fd809b7e 569 Pfam PF10646 Sporulation and spore germination 179 283 2.1E-5 T 14-09-2016 IPR019606 GerMN domain ccrud_RS03680 96cc71c39f47f46827932b61fd809b7e 569 Pfam PF10647 Lipoprotein LpqB beta-propeller domain 316 567 3.5E-58 T 14-09-2016 IPR018910 Lipoprotein LpqB, beta-propeller domain, C-terminal ccrud_RS03680 96cc71c39f47f46827932b61fd809b7e 569 SMART SM00909 204 287 4.3E-7 T 14-09-2016 IPR019606 GerMN domain ccrud_RS03680 96cc71c39f47f46827932b61fd809b7e 569 Hamap MF_01373 Lipoprotein LpqB [lpqB]. 6 569 24.411 T 14-09-2016 IPR023959 Lipoprotein LpqB ccrud_RS07960 e2b19b9842d9c736f215c0ad57c7e584 226 TIGRFAM TIGR04037 LLM_duo_CE1759: LLM-partnered FMN reductase, CE1759 family 4 219 7.1E-84 T 14-09-2016 IPR023932 Uncharacterised protein family, CE1759 ccrud_RS07960 e2b19b9842d9c736f215c0ad57c7e584 226 SUPERFAMILY SSF52218 3 177 3.43E-26 T 14-09-2016 IPR029039 Flavoprotein-like domain ccrud_RS07960 e2b19b9842d9c736f215c0ad57c7e584 226 Pfam PF03358 NADPH-dependent FMN reductase 3 153 9.5E-30 T 14-09-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 ccrud_RS07960 e2b19b9842d9c736f215c0ad57c7e584 226 PANTHER PTHR30543:SF8 1 195 8.0E-46 T 14-09-2016 ccrud_RS07960 e2b19b9842d9c736f215c0ad57c7e584 226 PANTHER PTHR30543 1 195 8.0E-46 T 14-09-2016 ccrud_RS07960 e2b19b9842d9c736f215c0ad57c7e584 226 Gene3D G3DSA:3.40.50.360 1 177 8.2E-30 T 14-09-2016 IPR029039 Flavoprotein-like domain ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 Pfam PF00072 Response regulator receiver domain 12 122 4.6E-27 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 Gene3D G3DSA:3.40.50.2300 9 146 3.3E-35 T 14-09-2016 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 SUPERFAMILY SSF52172 10 142 7.54E-33 T 14-09-2016 IPR011006 CheY-like superfamily ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 PANTHER PTHR26402 10 200 1.4E-51 T 14-09-2016 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 189 5.1E-13 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 SMART SM00421 145 202 3.4E-14 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 PANTHER PTHR26402:SF546 10 200 1.4E-51 T 14-09-2016 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 4.4E-10 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 4.4E-10 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 4.4E-10 T 14-09-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 SUPERFAMILY SSF46894 138 205 1.19E-15 T 14-09-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 Gene3D G3DSA:1.10.10.10 147 200 6.4E-17 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12885 375ae436474295154bd43b9aa7ef4388 210 SMART SM00448 10 121 1.6E-28 T 14-09-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 ccrud_RS08050 7b8370697b9ac73aff3fb7c4050f93c2 161 Pfam PF12823 Domain of unknown function (DUF3817) 5 90 6.3E-17 T 14-09-2016 IPR023845 Domain of unknown function DUF3817, transmembrane ccrud_RS08050 7b8370697b9ac73aff3fb7c4050f93c2 161 TIGRFAM TIGR03954 integ_memb_HG: integral membrane protein 8 88 1.2E-17 T 14-09-2016 IPR023845 Domain of unknown function DUF3817, transmembrane ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 Gene3D G3DSA:3.40.50.620 42 334 1.1E-73 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 TIGRFAM TIGR03447 mycothiol_MshC: cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase 2 420 2.7E-220 T 14-09-2016 IPR017812 Mycothiol ligase MshC GO:0010125|GO:0035446 ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 249 270 1.2E-25 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 45 56 1.2E-25 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 81 90 1.2E-25 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 218 236 1.2E-25 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 SUPERFAMILY SSF52374 40 343 1.88E-69 T 14-09-2016 ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 PANTHER PTHR10890:SF5 1 390 2.9E-185 T 14-09-2016 ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 Hamap MF_01697 L-cysteine:1D-myo-inositol 2-amino-2-deoxy-alpha-D-glucopyranoside ligase [mshC]. 9 420 50.838 T 14-09-2016 IPR017812 Mycothiol ligase MshC GO:0010125|GO:0035446 ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 PANTHER PTHR10890 1 390 2.9E-185 T 14-09-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 ccrud_RS07375 57800ed3314671db1d58ac939a722df2 420 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 41 342 3.8E-86 T 14-09-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 ccrud_RS13865 82795610684ec5afd8d7594f2e347e7a 67 Pfam PF00403 Heavy-metal-associated domain 7 64 1.1E-14 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ccrud_RS13865 82795610684ec5afd8d7594f2e347e7a 67 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 37 - T 14-09-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 ccrud_RS13865 82795610684ec5afd8d7594f2e347e7a 67 SUPERFAMILY SSF55008 5 66 4.32E-16 T 14-09-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 ccrud_RS13865 82795610684ec5afd8d7594f2e347e7a 67 Gene3D G3DSA:3.30.70.100 5 65 6.8E-20 T 14-09-2016 ccrud_RS13865 82795610684ec5afd8d7594f2e347e7a 67 PRINTS PR00944 Copper ion binding protein signature 3 15 1.2E-8 T 14-09-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 ccrud_RS13865 82795610684ec5afd8d7594f2e347e7a 67 PRINTS PR00944 Copper ion binding protein signature 15 28 1.2E-8 T 14-09-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 ccrud_RS13865 82795610684ec5afd8d7594f2e347e7a 67 PRINTS PR00944 Copper ion binding protein signature 28 41 1.2E-8 T 14-09-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 ccrud_RS13865 82795610684ec5afd8d7594f2e347e7a 67 PRINTS PR00944 Copper ion binding protein signature 52 65 1.2E-8 T 14-09-2016 IPR000428 Copper ion binding protein GO:0005507|GO:0006825 ccrud_RS04060 0e3ef541b06458b33c5b0810c6dbc997 486 Pfam PF00860 Permease family 29 440 3.5E-28 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS04060 0e3ef541b06458b33c5b0810c6dbc997 486 PANTHER PTHR11119 1 468 2.3E-100 T 14-09-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS04060 0e3ef541b06458b33c5b0810c6dbc997 486 PANTHER PTHR11119:SF9 1 468 2.3E-100 T 14-09-2016 IPR029940 AzgA purine transporter GO:0005345|GO:0006863 ccrud_RS08440 2e1049aa356eb338c480f68e268ee525 228 PANTHER PTHR30614:SF7 15 225 1.2E-76 T 14-09-2016 ccrud_RS08440 2e1049aa356eb338c480f68e268ee525 228 SUPERFAMILY SSF161098 10 210 5.23E-34 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08440 2e1049aa356eb338c480f68e268ee525 228 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 211 2.5E-12 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS08440 2e1049aa356eb338c480f68e268ee525 228 PANTHER PTHR30614 15 225 1.2E-76 T 14-09-2016 ccrud_RS08440 2e1049aa356eb338c480f68e268ee525 228 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 118 1.5E-15 T 14-09-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 ccrud_RS08440 2e1049aa356eb338c480f68e268ee525 228 Gene3D G3DSA:1.10.3720.10 10 224 2.4E-35 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 SUPERFAMILY SSF51735 3 173 5.09E-44 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 4 138 1.2E-22 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 Gene3D G3DSA:3.30.360.10 160 315 8.8E-58 T 14-09-2016 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 SMART SM00859 4 143 4.6E-42 T 14-09-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 Gene3D G3DSA:3.40.50.720 1 159 4.8E-50 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 PANTHER PTHR32338 2 347 3.5E-143 T 14-09-2016 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 146 162 - T 14-09-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 160 318 5.4E-29 T 14-09-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 PANTHER PTHR32338:SF8 2 347 3.5E-143 T 14-09-2016 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 3 341 38.641 T 14-09-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 3 347 1.3E-117 T 14-09-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06685 d1eaa6e94eb09bd94233d3a5315fdeb6 347 SUPERFAMILY SSF55347 151 315 2.36E-50 T 14-09-2016 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 56 74 - T 14-09-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 Gene3D G3DSA:3.20.20.70 8 260 3.4E-81 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 Pfam PF00218 Indole-3-glycerol phosphate synthase 10 258 2.7E-87 T 14-09-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 SUPERFAMILY SSF51366 263 466 5.18E-34 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 SUPERFAMILY SSF51366 37 260 3.77E-70 T 14-09-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 PANTHER PTHR22854:SF2 3 288 4.0E-99 T 14-09-2016 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 264 472 24.608 T 14-09-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 Gene3D G3DSA:3.20.20.70 263 449 2.7E-42 T 14-09-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 263 449 7.9E-30 T 14-09-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 ccrud_RS13705 5ef1bce29ce9fc29bedace3e6093c890 474 PANTHER PTHR22854 3 288 4.0E-99 T 14-09-2016 ccrud_RS05640 e690999a747b35066eab93910f21bb8e 71 SUPERFAMILY SSF50249 2 60 2.23E-6 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS05640 e690999a747b35066eab93910f21bb8e 71 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 2 56 6.0E-8 T 14-09-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal ccrud_RS06390 bd6ccb4c4d766aea52b7bee96a5b4302 350 Pfam PF05901 Excalibur calcium-binding domain 314 350 1.2E-6 T 14-09-2016 IPR008613 Excalibur calcium-binding domain ccrud_RS06390 bd6ccb4c4d766aea52b7bee96a5b4302 350 SMART SM00894 313 350 8.5E-7 T 14-09-2016 IPR008613 Excalibur calcium-binding domain ccrud_RS06390 bd6ccb4c4d766aea52b7bee96a5b4302 350 PANTHER PTHR24094 72 262 6.1E-50 T 14-09-2016 ccrud_RS06390 bd6ccb4c4d766aea52b7bee96a5b4302 350 Pfam PF07510 Protein of unknown function (DUF1524) 114 252 1.4E-17 T 14-09-2016 IPR011089 Domain of unknown function DUF1524 ccrud_RS06390 bd6ccb4c4d766aea52b7bee96a5b4302 350 PANTHER PTHR24094:SF10 72 262 6.1E-50 T 14-09-2016 ccrud_RS05395 320022cd8ec1957db677d35a44736d6a 390 PANTHER PTHR12526:SF355 1 390 2.1E-160 T 14-09-2016 ccrud_RS05395 320022cd8ec1957db677d35a44736d6a 390 PANTHER PTHR12526 1 390 2.1E-160 T 14-09-2016 ccrud_RS05395 320022cd8ec1957db677d35a44736d6a 390 SUPERFAMILY SSF53756 1 389 2.94E-84 T 14-09-2016 ccrud_RS05395 320022cd8ec1957db677d35a44736d6a 390 Pfam PF00534 Glycosyl transferases group 1 195 367 7.4E-33 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 ccrud_RS05395 320022cd8ec1957db677d35a44736d6a 390 TIGRFAM TIGR02149 glgA_Coryne: glycogen synthase, Corynebacterium family 1 389 1.3E-172 T 14-09-2016 IPR011875 Glycogen synthase, corynebacterial KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00934 ccrud_RS05395 320022cd8ec1957db677d35a44736d6a 390 Pfam PF13439 Glycosyltransferase Family 4 15 178 2.6E-29 T 14-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain ccrud_RS05395 320022cd8ec1957db677d35a44736d6a 390 Gene3D G3DSA:3.40.50.2000 163 367 4.8E-46 T 14-09-2016 ccrud_RS10100 cea026353906128609e6023ae5188802 335 PANTHER PTHR30473 1 334 3.6E-157 T 14-09-2016 ccrud_RS10100 cea026353906128609e6023ae5188802 335 Pfam PF02562 PhoH-like protein 117 320 3.8E-93 T 14-09-2016 IPR003714 PhoH-like protein GO:0005524 ccrud_RS10100 cea026353906128609e6023ae5188802 335 PANTHER PTHR30473:SF1 1 334 3.6E-157 T 14-09-2016 ccrud_RS10100 cea026353906128609e6023ae5188802 335 SUPERFAMILY SSF52540 116 281 8.38E-38 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS10100 cea026353906128609e6023ae5188802 335 Gene3D G3DSA:3.40.50.300 116 320 6.2E-98 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03685 44bd4218212c14c71e4bbd816497b226 196 SUPERFAMILY SSF53271 86 194 5.68E-14 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS03685 44bd4218212c14c71e4bbd816497b226 196 Gene3D G3DSA:3.40.50.2020 75 193 3.3E-13 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS00510 02427d511c4ddb3f2573a5b40d312e03 226 PIRSF PIRSF009467 2 226 1.1E-69 T 14-09-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 ccrud_RS00510 02427d511c4ddb3f2573a5b40d312e03 226 PANTHER PTHR33620:SF1 2 226 2.4E-46 T 14-09-2016 ccrud_RS00510 02427d511c4ddb3f2573a5b40d312e03 226 Hamap MF_01385 Urease accessory protein UreF [ureF]. 5 226 26.198 T 14-09-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 ccrud_RS00510 02427d511c4ddb3f2573a5b40d312e03 226 PANTHER PTHR33620 2 226 2.4E-46 T 14-09-2016 ccrud_RS00510 02427d511c4ddb3f2573a5b40d312e03 226 Pfam PF01730 UreF 37 183 3.4E-29 T 14-09-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 ccrud_RS11405 5399ea5ac408ace3097935f96da777c4 242 SUPERFAMILY SSF52833 76 191 3.46E-15 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11405 5399ea5ac408ace3097935f96da777c4 242 Pfam PF13462 Thioredoxin 76 197 2.7E-9 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS11405 5399ea5ac408ace3097935f96da777c4 242 Gene3D G3DSA:3.40.30.10 71 166 4.0E-13 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS00220 8a2de13700216e8e06f3ff765785f086 268 SUPERFAMILY SSF46785 11 76 3.11E-13 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00220 8a2de13700216e8e06f3ff765785f086 268 SUPERFAMILY SSF55781 81 248 5.43E-32 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS00220 8a2de13700216e8e06f3ff765785f086 268 Gene3D G3DSA:3.30.450.40 83 251 8.1E-34 T 14-09-2016 IPR029016 GAF domain-like ccrud_RS00220 8a2de13700216e8e06f3ff765785f086 268 Pfam PF01614 Bacterial transcriptional regulator 130 245 1.1E-14 T 14-09-2016 IPR014757 Transcription regulator IclR, C-terminal ccrud_RS00220 8a2de13700216e8e06f3ff765785f086 268 PANTHER PTHR30136 1 259 2.1E-38 T 14-09-2016 ccrud_RS00220 8a2de13700216e8e06f3ff765785f086 268 SMART SM00346 11 97 3.7E-12 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS00220 8a2de13700216e8e06f3ff765785f086 268 Gene3D G3DSA:1.10.10.10 2 68 6.3E-15 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS00220 8a2de13700216e8e06f3ff765785f086 268 Pfam PF09339 IclR helix-turn-helix domain 11 59 4.7E-10 T 14-09-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 ccrud_RS13530 eb72cb9ad4cd2fb1375110d4c5151c41 313 SUPERFAMILY SSF52402 176 311 4.4E-15 T 14-09-2016 ccrud_RS13530 eb72cb9ad4cd2fb1375110d4c5151c41 313 SUPERFAMILY SSF52402 22 160 6.98E-11 T 14-09-2016 ccrud_RS13530 eb72cb9ad4cd2fb1375110d4c5151c41 313 Gene3D G3DSA:3.40.50.620 22 157 2.6E-16 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS13530 eb72cb9ad4cd2fb1375110d4c5151c41 313 Gene3D G3DSA:3.40.50.620 176 310 1.0E-19 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS13530 eb72cb9ad4cd2fb1375110d4c5151c41 313 Pfam PF00582 Universal stress protein family 177 311 1.1E-12 T 14-09-2016 IPR006016 UspA GO:0006950 ccrud_RS13530 eb72cb9ad4cd2fb1375110d4c5151c41 313 Pfam PF00582 Universal stress protein family 22 156 4.5E-7 T 14-09-2016 IPR006016 UspA GO:0006950 ccrud_RS08165 19b0a41512b39ac44a14f94e9b544bad 232 Gene3D G3DSA:3.40.430.10 15 230 4.4E-47 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS08165 19b0a41512b39ac44a14f94e9b544bad 232 Pfam PF01872 RibD C-terminal domain 31 219 3.3E-19 T 14-09-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 ccrud_RS08165 19b0a41512b39ac44a14f94e9b544bad 232 SUPERFAMILY SSF53597 22 230 8.64E-29 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS09620 ffc1e12538424bcec1c772a3e09601ce 295 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 176 250 4.8E-12 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 ccrud_RS09620 ffc1e12538424bcec1c772a3e09601ce 295 Gene3D G3DSA:1.10.760.10 175 258 9.4E-20 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 ccrud_RS09620 ffc1e12538424bcec1c772a3e09601ce 295 Gene3D G3DSA:1.10.760.10 66 150 2.3E-17 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 ccrud_RS09620 ffc1e12538424bcec1c772a3e09601ce 295 PANTHER PTHR33751 35 260 5.0E-46 T 14-09-2016 ccrud_RS09620 ffc1e12538424bcec1c772a3e09601ce 295 PANTHER PTHR33751:SF1 35 260 5.0E-46 T 14-09-2016 ccrud_RS09620 ffc1e12538424bcec1c772a3e09601ce 295 Pfam PF00034 Cytochrome c 69 142 2.7E-5 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 ccrud_RS09620 ffc1e12538424bcec1c772a3e09601ce 295 SUPERFAMILY SSF46626 169 252 6.63E-26 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 ccrud_RS09620 ffc1e12538424bcec1c772a3e09601ce 295 PIRSF PIRSF000007 8 295 2.3E-149 T 14-09-2016 IPR009152 Ubiquinol-cytochrome-c reductase, cytochrome c subunit GO:0005506|GO:0009055|GO:0016021|GO:0020037 ccrud_RS09620 ffc1e12538424bcec1c772a3e09601ce 295 SUPERFAMILY SSF46626 29 147 6.77E-16 T 14-09-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 PIRSF PIRSF001529 1 419 1.2E-135 T 14-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 PANTHER PTHR11778:SF8 1 418 5.0E-244 T 14-09-2016 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 410 6.2E-130 T 14-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 PRINTS PR00981 Seryl-tRNA synthetase signature 271 284 4.4E-30 T 14-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 PRINTS PR00981 Seryl-tRNA synthetase signature 328 344 4.4E-30 T 14-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 PRINTS PR00981 Seryl-tRNA synthetase signature 346 362 4.4E-30 T 14-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 PRINTS PR00981 Seryl-tRNA synthetase signature 259 271 4.4E-30 T 14-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 PRINTS PR00981 Seryl-tRNA synthetase signature 311 324 4.4E-30 T 14-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 Gene3D G3DSA:3.30.930.10 108 413 1.7E-119 T 14-09-2016 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 SUPERFAMILY SSF46589 1 106 1.62E-23 T 14-09-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 218 393 7.5E-27 T 14-09-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 106 1.0E-25 T 14-09-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 SUPERFAMILY SSF55681 114 418 1.08E-87 T 14-09-2016 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 PANTHER PTHR11778 1 418 5.0E-244 T 14-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 415 37.703 T 14-09-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 ccrud_RS13175 34b721733334398178d0f2b61c7c282d 419 Gene3D G3DSA:1.10.287.40 1 102 2.7E-30 T 14-09-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 ccrud_RS11975 2a47e46bdc330d8ef2b53d7199aa0c49 272 Pfam PF00005 ABC transporter 38 188 2.5E-35 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS11975 2a47e46bdc330d8ef2b53d7199aa0c49 272 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS11975 2a47e46bdc330d8ef2b53d7199aa0c49 272 SUPERFAMILY SSF52540 30 259 3.77E-66 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11975 2a47e46bdc330d8ef2b53d7199aa0c49 272 Gene3D G3DSA:3.40.50.300 12 261 1.2E-74 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11975 2a47e46bdc330d8ef2b53d7199aa0c49 272 PANTHER PTHR24220 13 264 1.3E-103 T 14-09-2016 ccrud_RS11975 2a47e46bdc330d8ef2b53d7199aa0c49 272 PANTHER PTHR24220:SF336 13 264 1.3E-103 T 14-09-2016 ccrud_RS11975 2a47e46bdc330d8ef2b53d7199aa0c49 272 SMART SM00382 46 237 8.9E-17 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS13295 02f9737461fa51cbdd78c46c5e7dbae6 262 PANTHER PTHR36492:SF1 4 244 1.0E-74 T 14-09-2016 ccrud_RS13295 02f9737461fa51cbdd78c46c5e7dbae6 262 Gene3D G3DSA:3.65.10.10 56 98 8.0E-4 T 14-09-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 ccrud_RS13295 02f9737461fa51cbdd78c46c5e7dbae6 262 SUPERFAMILY SSF56300 4 124 3.32E-25 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS13295 02f9737461fa51cbdd78c46c5e7dbae6 262 SUPERFAMILY SSF56300 158 247 3.32E-25 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS13295 02f9737461fa51cbdd78c46c5e7dbae6 262 PANTHER PTHR36492 4 244 1.0E-74 T 14-09-2016 ccrud_RS13295 02f9737461fa51cbdd78c46c5e7dbae6 262 Gene3D G3DSA:3.60.21.10 4 55 2.7E-19 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS13295 02f9737461fa51cbdd78c46c5e7dbae6 262 Gene3D G3DSA:3.60.21.10 158 247 2.7E-19 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS13295 02f9737461fa51cbdd78c46c5e7dbae6 262 Pfam PF00149 Calcineurin-like phosphoesterase 4 224 2.9E-15 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 ccrud_RS13210 39b9f50a033154fba1b346a81056d44e 238 Pfam PF02517 CAAX protease self-immunity 132 220 1.0E-14 T 14-09-2016 IPR003675 CAAX amino terminal protease GO:0016020 ccrud_RS08585 21b9cdda85bd6c59c071ae342ddde9e0 315 SUPERFAMILY SSF53590 3 311 9.94E-86 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain ccrud_RS08585 21b9cdda85bd6c59c071ae342ddde9e0 315 PANTHER PTHR12304 1 314 6.1E-78 T 14-09-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase ccrud_RS08585 21b9cdda85bd6c59c071ae342ddde9e0 315 PANTHER PTHR12304:SF4 1 314 6.1E-78 T 14-09-2016 ccrud_RS08585 21b9cdda85bd6c59c071ae342ddde9e0 315 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 3 303 5.9E-67 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain ccrud_RS08585 21b9cdda85bd6c59c071ae342ddde9e0 315 Gene3D G3DSA:3.90.245.10 1 312 1.3E-101 T 14-09-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain ccrud_RS02780 ecdfc37fdef3223bada36f01a539c3f7 148 SUPERFAMILY SSF52080 8 147 2.75E-40 T 14-09-2016 IPR021131 Ribosomal protein L18e/L15P ccrud_RS02780 ecdfc37fdef3223bada36f01a539c3f7 148 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 6 145 2.9E-44 T 14-09-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 ccrud_RS02780 ecdfc37fdef3223bada36f01a539c3f7 148 ProSitePatterns PS00475 Ribosomal protein L15 signature. 112 142 - T 14-09-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS02780 ecdfc37fdef3223bada36f01a539c3f7 148 PANTHER PTHR12934 5 148 2.8E-60 T 14-09-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 ccrud_RS02780 ecdfc37fdef3223bada36f01a539c3f7 148 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 30 146 3.3E-33 T 14-09-2016 IPR021131 Ribosomal protein L18e/L15P ccrud_RS02780 ecdfc37fdef3223bada36f01a539c3f7 148 Gene3D G3DSA:3.100.10.10 35 147 1.5E-33 T 14-09-2016 ccrud_RS02780 ecdfc37fdef3223bada36f01a539c3f7 148 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 7 148 19.706 T 14-09-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 ccrud_RS00025 dd034a0e08c72b7e8a045a6159065872 178 Hamap MF_00630 UPF0232 protein . 7 165 27.85 T 14-09-2016 IPR023007 Uncharacterised protein family UPF0232, actinobacteria ccrud_RS00025 dd034a0e08c72b7e8a045a6159065872 178 Pfam PF05258 Protein of unknown function (DUF721) 66 153 7.8E-23 T 14-09-2016 IPR007922 Protein of unknown function DUF721/UPF0232 ccrud_RS00025 dd034a0e08c72b7e8a045a6159065872 178 PANTHER PTHR36456 51 178 4.5E-24 T 14-09-2016 ccrud_RS05770 b6aec884a1b09730f9c657b2edcd0b3e 186 Gene3D G3DSA:3.90.550.10 1 178 3.8E-30 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS05770 b6aec884a1b09730f9c657b2edcd0b3e 186 PANTHER PTHR19136:SF81 1 181 8.5E-16 T 14-09-2016 ccrud_RS05770 b6aec884a1b09730f9c657b2edcd0b3e 186 Pfam PF12804 MobA-like NTP transferase domain 4 152 1.2E-23 T 14-09-2016 IPR025877 MobA-like NTP transferase ccrud_RS05770 b6aec884a1b09730f9c657b2edcd0b3e 186 PANTHER PTHR19136 1 181 8.5E-16 T 14-09-2016 ccrud_RS05770 b6aec884a1b09730f9c657b2edcd0b3e 186 SUPERFAMILY SSF53448 1 175 3.55E-21 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS10460 6609e41485206bfaa0a8561749c9426d 220 PANTHER PTHR12039 7 206 1.3E-52 T 14-09-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 ccrud_RS10460 6609e41485206bfaa0a8561749c9426d 220 Pfam PF01467 Cytidylyltransferase-like 13 176 6.4E-31 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ccrud_RS10460 6609e41485206bfaa0a8561749c9426d 220 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 13 201 1.9E-57 T 14-09-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 ccrud_RS10460 6609e41485206bfaa0a8561749c9426d 220 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 9 202 30.183 T 14-09-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 ccrud_RS10460 6609e41485206bfaa0a8561749c9426d 220 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 11 75 5.1E-11 T 14-09-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 ccrud_RS10460 6609e41485206bfaa0a8561749c9426d 220 SUPERFAMILY SSF52374 9 205 1.16E-54 T 14-09-2016 ccrud_RS10460 6609e41485206bfaa0a8561749c9426d 220 Gene3D G3DSA:3.40.50.620 10 206 1.7E-69 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS01095 f2a9fa82bf5d31664405a049ed18528f 93 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 14-09-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 ccrud_RS01095 f2a9fa82bf5d31664405a049ed18528f 93 Gene3D G3DSA:3.10.20.30 3 79 6.5E-20 T 14-09-2016 IPR012675 Beta-grasp domain ccrud_RS01095 f2a9fa82bf5d31664405a049ed18528f 93 SUPERFAMILY SSF54292 3 80 1.01E-20 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS01095 f2a9fa82bf5d31664405a049ed18528f 93 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 7 80 2.6E-12 T 14-09-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 ccrud_RS00775 947d26c14f935b04d6a2cde80ab27e13 284 SUPERFAMILY SSF54593 12 119 1.75E-19 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS00775 947d26c14f935b04d6a2cde80ab27e13 284 PANTHER PTHR33993 5 257 3.5E-61 T 14-09-2016 ccrud_RS00775 947d26c14f935b04d6a2cde80ab27e13 284 SUPERFAMILY SSF54593 138 252 4.3E-17 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS00775 947d26c14f935b04d6a2cde80ab27e13 284 PANTHER PTHR33993:SF3 5 257 3.5E-61 T 14-09-2016 ccrud_RS00775 947d26c14f935b04d6a2cde80ab27e13 284 Gene3D G3DSA:3.10.180.10 136 253 3.3E-23 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS00775 947d26c14f935b04d6a2cde80ab27e13 284 Gene3D G3DSA:3.10.180.10 11 121 7.7E-28 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS10420 ae355f074ba09806ce21261e9fd79dc0 223 PANTHER PTHR30086 1 222 1.0E-36 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 ccrud_RS10420 ae355f074ba09806ce21261e9fd79dc0 223 PANTHER PTHR30086:SF1 1 222 1.0E-36 T 14-09-2016 ccrud_RS10420 ae355f074ba09806ce21261e9fd79dc0 223 Pfam PF01810 LysE type translocator 15 217 2.3E-31 T 14-09-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 ccrud_RS11330 3d5bebe87bc7156888f41f54dda281ac 241 Pfam PF01981 Peptidyl-tRNA hydrolase PTH2 158 240 2.8E-7 T 14-09-2016 IPR002833 Peptidyl-tRNA hydrolase, PTH2 GO:0004045 MetaCyc: PWY-6308 ccrud_RS11330 3d5bebe87bc7156888f41f54dda281ac 241 Gene3D G3DSA:3.40.1490.10 156 240 3.2E-13 T 14-09-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 ccrud_RS11330 3d5bebe87bc7156888f41f54dda281ac 241 SUPERFAMILY SSF102462 155 240 1.31E-18 T 14-09-2016 IPR023476 Peptidyl-tRNA hydrolase II domain MetaCyc: PWY-6308 ccrud_RS02415 090226500fb8aee92d17ad7fa06de696 93 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 8 82 1.4E-22 T 14-09-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 ccrud_RS02415 090226500fb8aee92d17ad7fa06de696 93 PANTHER PTHR12599 4 84 3.8E-22 T 14-09-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 ccrud_RS02415 090226500fb8aee92d17ad7fa06de696 93 Gene3D G3DSA:3.30.1360.20 9 84 2.3E-24 T 14-09-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 ccrud_RS02415 090226500fb8aee92d17ad7fa06de696 93 SUPERFAMILY SSF55248 7 85 3.01E-24 T 14-09-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 ccrud_RS10615 d8d3f264f46b68bd63456dc20f04f96e 449 Pfam PF07690 Major Facilitator Superfamily 21 304 2.1E-36 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS10615 d8d3f264f46b68bd63456dc20f04f96e 449 PANTHER PTHR23508:SF15 12 226 2.3E-99 T 14-09-2016 ccrud_RS10615 d8d3f264f46b68bd63456dc20f04f96e 449 PANTHER PTHR23508 246 426 2.3E-99 T 14-09-2016 ccrud_RS10615 d8d3f264f46b68bd63456dc20f04f96e 449 Gene3D G3DSA:1.20.1250.20 258 424 1.0E-20 T 14-09-2016 ccrud_RS10615 d8d3f264f46b68bd63456dc20f04f96e 449 SUPERFAMILY SSF103473 7 432 1.18E-73 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS10615 d8d3f264f46b68bd63456dc20f04f96e 449 PANTHER PTHR23508:SF15 246 426 2.3E-99 T 14-09-2016 ccrud_RS10615 d8d3f264f46b68bd63456dc20f04f96e 449 PANTHER PTHR23508 12 226 2.3E-99 T 14-09-2016 ccrud_RS10615 d8d3f264f46b68bd63456dc20f04f96e 449 Gene3D G3DSA:1.20.1250.20 20 196 1.2E-34 T 14-09-2016 ccrud_RS00250 154ad4ffc640f7dbc22bb5a447c1d116 142 Pfam PF12728 Helix-turn-helix domain 73 119 4.0E-8 T 14-09-2016 ccrud_RS00250 154ad4ffc640f7dbc22bb5a447c1d116 142 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 73 117 5.9E-11 T 14-09-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 ccrud_RS10035 db3475e73f4132d2da4e168e6eef6bbc 694 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 57 169 8.3E-9 T 14-09-2016 IPR007621 TPM domain ccrud_RS03460 fafeb188daa3c6b0dab35074dd4c955a 349 SUPERFAMILY SSF56059 204 345 2.58E-21 T 14-09-2016 ccrud_RS03460 fafeb188daa3c6b0dab35074dd4c955a 349 SUPERFAMILY SSF56059 111 169 2.58E-21 T 14-09-2016 ccrud_RS01640 dd4ec637f8c8370a6e9d038e04560604 187 PANTHER PTHR37816:SF1 13 185 2.0E-21 T 14-09-2016 ccrud_RS01640 dd4ec637f8c8370a6e9d038e04560604 187 PANTHER PTHR37816 13 185 2.0E-21 T 14-09-2016 ccrud_RS01640 dd4ec637f8c8370a6e9d038e04560604 187 SUPERFAMILY SSF52540 12 108 9.72E-13 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01640 dd4ec637f8c8370a6e9d038e04560604 187 Gene3D G3DSA:3.40.50.300 12 120 5.5E-10 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08765 f40ad6607b02b657663955ad12be2e44 393 SUPERFAMILY SSF56014 279 363 1.7E-12 T 14-09-2016 ccrud_RS08765 f40ad6607b02b657663955ad12be2e44 393 SUPERFAMILY SSF51717 47 221 1.96E-10 T 14-09-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 ccrud_RS08765 f40ad6607b02b657663955ad12be2e44 393 Pfam PF04551 GcpE protein 23 364 1.8E-133 T 14-09-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 ccrud_RS08765 f40ad6607b02b657663955ad12be2e44 393 PIRSF PIRSF004640 14 375 5.1E-143 T 14-09-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 ccrud_RS08765 f40ad6607b02b657663955ad12be2e44 393 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 18 370 33.531 T 14-09-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 ccrud_RS08765 f40ad6607b02b657663955ad12be2e44 393 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 20 363 1.6E-127 T 14-09-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 ccrud_RS08765 f40ad6607b02b657663955ad12be2e44 393 PANTHER PTHR30454 20 378 1.6E-195 T 14-09-2016 ccrud_RS05185 d64aae1bc897fcb69ea9b89c2d40a01c 352 Gene3D G3DSA:3.90.1550.10 100 348 2.5E-66 T 14-09-2016 ccrud_RS05185 d64aae1bc897fcb69ea9b89c2d40a01c 352 PANTHER PTHR12561 70 348 1.8E-80 T 14-09-2016 ccrud_RS05185 d64aae1bc897fcb69ea9b89c2d40a01c 352 Pfam PF03099 Biotin/lipoate A/B protein ligase family 156 266 2.9E-10 T 14-09-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 ccrud_RS05185 d64aae1bc897fcb69ea9b89c2d40a01c 352 SUPERFAMILY SSF55681 102 348 7.1E-68 T 14-09-2016 ccrud_RS05185 d64aae1bc897fcb69ea9b89c2d40a01c 352 PANTHER PTHR12561:SF7 70 348 1.8E-80 T 14-09-2016 ccrud_RS00445 8d6ff8846637e949ce35787e5cb1c3eb 319 Gene3D G3DSA:3.40.50.1820 80 313 1.0E-51 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00445 8d6ff8846637e949ce35787e5cb1c3eb 319 Pfam PF00561 alpha/beta hydrolase fold 91 191 3.0E-10 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS00445 8d6ff8846637e949ce35787e5cb1c3eb 319 SUPERFAMILY SSF53474 88 285 2.32E-26 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00275 74e1f9d417ad47b242ae77c086099acb 97 SMART SM00450 5 95 4.5E-20 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00275 74e1f9d417ad47b242ae77c086099acb 97 PANTHER PTHR12231 16 96 6.4E-16 T 14-09-2016 ccrud_RS00275 74e1f9d417ad47b242ae77c086099acb 97 Gene3D G3DSA:3.40.250.10 3 96 2.7E-27 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00275 74e1f9d417ad47b242ae77c086099acb 97 SUPERFAMILY SSF52821 16 96 4.32E-29 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS00275 74e1f9d417ad47b242ae77c086099acb 97 Pfam PF00581 Rhodanese-like domain 12 91 1.9E-16 T 14-09-2016 IPR001763 Rhodanese-like domain ccrud_RS06580 649778024e4cd5901c21ea248e487e40 129 Gene3D G3DSA:1.10.10.10 8 126 3.4E-34 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06580 649778024e4cd5901c21ea248e487e40 129 PANTHER PTHR33204:SF7 4 126 5.3E-49 T 14-09-2016 ccrud_RS06580 649778024e4cd5901c21ea248e487e40 129 PANTHER PTHR33204 4 126 5.3E-49 T 14-09-2016 ccrud_RS06580 649778024e4cd5901c21ea248e487e40 129 SUPERFAMILY SSF46785 10 120 7.39E-25 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06580 649778024e4cd5901c21ea248e487e40 129 Pfam PF01638 HxlR-like helix-turn-helix 26 115 1.7E-19 T 14-09-2016 IPR002577 Helix-turn-helix, HxlR type ccrud_RS09840 f66601e8c727cbfc7e41c03cb7e846b0 469 SUPERFAMILY SSF50249 9 404 2.06E-83 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS09840 f66601e8c727cbfc7e41c03cb7e846b0 469 PANTHER PTHR23355 36 349 4.3E-41 T 14-09-2016 ccrud_RS09840 f66601e8c727cbfc7e41c03cb7e846b0 469 Pfam PF00773 RNB domain 42 349 2.4E-43 T 14-09-2016 ccrud_RS09840 f66601e8c727cbfc7e41c03cb7e846b0 469 SMART SM00955 42 362 2.5E-60 T 14-09-2016 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 PRINTS PR00474 Glutamate 5-kinase family signature 61 75 6.1E-7 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 PRINTS PR00474 Glutamate 5-kinase family signature 193 220 6.1E-7 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 PRINTS PR00474 Glutamate 5-kinase family signature 244 264 6.1E-7 T 14-09-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 Hamap MF_00082_B Acetylglutamate kinase [argB]. 28 294 33.702 T 14-09-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 PANTHER PTHR23342 13 294 6.2E-106 T 14-09-2016 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 SUPERFAMILY SSF53633 13 295 9.56E-81 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 Gene3D G3DSA:3.40.1160.10 28 293 4.2E-96 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 Pfam PF00696 Amino acid kinase family 30 270 1.3E-42 T 14-09-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 PIRSF PIRSF000728 15 293 1.3E-100 T 14-09-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS06695 577641f021d26aec1d779c259124b588 317 TIGRFAM TIGR00761 argB: acetylglutamate kinase 32 269 2.4E-73 T 14-09-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 ccrud_RS11420 6bbe02c8cefa797889a96469a0abbfaa 108 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 5 105 1.9E-21 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 ccrud_RS11420 6bbe02c8cefa797889a96469a0abbfaa 108 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 3 107 15.061 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 ccrud_RS11420 6bbe02c8cefa797889a96469a0abbfaa 108 PANTHER PTHR28259 1 108 2.1E-19 T 14-09-2016 ccrud_RS00470 d8c4a247ee8daee9a242ccc3cff63ed9 401 SUPERFAMILY SSF51182 7 395 1.02E-89 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS00470 d8c4a247ee8daee9a242ccc3cff63ed9 401 PANTHER PTHR11056 80 395 7.5E-67 T 14-09-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 ccrud_RS00470 d8c4a247ee8daee9a242ccc3cff63ed9 401 Gene3D G3DSA:2.60.120.10 97 177 1.1E-12 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS00470 d8c4a247ee8daee9a242ccc3cff63ed9 401 Pfam PF04209 homogentisate 1,2-dioxygenase 84 394 1.9E-19 T 14-09-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 ccrud_RS00470 d8c4a247ee8daee9a242ccc3cff63ed9 401 Gene3D G3DSA:2.60.120.10 239 372 3.2E-37 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS04605 223b38dcb693175dd531067138a6148c 294 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 6 291 2.7E-119 T 14-09-2016 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type ccrud_RS04605 223b38dcb693175dd531067138a6148c 294 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 275 8.0E-44 T 14-09-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 ccrud_RS04605 223b38dcb693175dd531067138a6148c 294 PANTHER PTHR11795:SF349 1 294 3.8E-101 T 14-09-2016 ccrud_RS04605 223b38dcb693175dd531067138a6148c 294 PANTHER PTHR11795 1 294 3.8E-101 T 14-09-2016 ccrud_RS11775 80fd06d668e39a4903de7aef63f15295 714 SUPERFAMILY SSF49899 42 323 1.12E-18 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain ccrud_RS11775 80fd06d668e39a4903de7aef63f15295 714 Gene3D G3DSA:2.60.120.200 45 323 9.8E-18 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain ccrud_RS11775 80fd06d668e39a4903de7aef63f15295 714 SUPERFAMILY SSF49899 373 560 3.17E-27 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain ccrud_RS11775 80fd06d668e39a4903de7aef63f15295 714 SUPERFAMILY SSF49899 589 634 3.17E-27 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain ccrud_RS11775 80fd06d668e39a4903de7aef63f15295 714 Pfam PF00722 Glycosyl hydrolases family 16 457 562 2.1E-8 T 14-09-2016 IPR000757 Glycoside hydrolase family 16 GO:0004553|GO:0005975 ccrud_RS11775 80fd06d668e39a4903de7aef63f15295 714 Gene3D G3DSA:2.60.120.200 365 633 1.0E-25 T 14-09-2016 IPR013320 Concanavalin A-like lectin/glucanase domain ccrud_RS07745 ead81b1cb94ee08b40c9b317e1ccd249 679 Hamap MF_00983 Probable primosomal protein N' [priA]. 19 678 20.47 T 14-09-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 ccrud_RS07745 ead81b1cb94ee08b40c9b317e1ccd249 679 PANTHER PTHR30580 4 679 5.8E-116 T 14-09-2016 ccrud_RS07745 ead81b1cb94ee08b40c9b317e1ccd249 679 Gene3D G3DSA:3.40.50.300 179 265 7.0E-4 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07745 ead81b1cb94ee08b40c9b317e1ccd249 679 SUPERFAMILY SSF52540 177 264 1.82E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS03530 8116e7e1ec011fb12a98d23d405a0749 264 Pfam PF13622 Thioesterase-like superfamily 32 256 4.0E-20 T 14-09-2016 ccrud_RS07170 d693a8faf65d8ff8e1914f50571deec0 130 Pfam PF13397 RNA polymerase-binding protein 4 106 3.6E-36 T 14-09-2016 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 ccrud_RS07170 d693a8faf65d8ff8e1914f50571deec0 130 Hamap MF_01483 RNA polymerase-binding protein RbpA [rbpA]. 1 109 23.763 T 14-09-2016 IPR025182 RNA polymerase-binding protein RbpA GO:0001000|GO:0045893 ccrud_RS12735 5959f485be8fd7f74a19538a312292ec 275 PANTHER PTHR30429 6 270 3.5E-69 T 14-09-2016 IPR004872 Lipoprotein NlpA family ccrud_RS12735 5959f485be8fd7f74a19538a312292ec 275 SUPERFAMILY SSF53850 36 271 1.32E-55 T 14-09-2016 ccrud_RS12735 5959f485be8fd7f74a19538a312292ec 275 Gene3D G3DSA:3.40.190.10 33 163 5.8E-39 T 14-09-2016 ccrud_RS12735 5959f485be8fd7f74a19538a312292ec 275 Pfam PF03180 NLPA lipoprotein 36 265 1.5E-59 T 14-09-2016 IPR004872 Lipoprotein NlpA family ccrud_RS06955 21b4e92460fa0a45318e6773c36ccc04 134 Gene3D G3DSA:3.10.450.50 13 133 3.4E-33 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS06955 21b4e92460fa0a45318e6773c36ccc04 134 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 10 132 25.464 T 14-09-2016 IPR023006 Uncharacterised protein family UPF0225 ccrud_RS06955 21b4e92460fa0a45318e6773c36ccc04 134 SUPERFAMILY SSF54427 35 132 5.78E-23 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS04930 d2ff31afadfa55466b550f654184f0a2 216 Pfam PF02682 Allophanate hydrolase subunit 1 1 203 6.8E-67 T 14-09-2016 IPR003833 Carboxyltransferase domain, subdomain C and D ccrud_RS04930 d2ff31afadfa55466b550f654184f0a2 216 PANTHER PTHR34698:SF2 1 212 7.8E-70 T 14-09-2016 ccrud_RS04930 d2ff31afadfa55466b550f654184f0a2 216 SUPERFAMILY SSF160467 3 97 2.22E-12 T 14-09-2016 ccrud_RS04930 d2ff31afadfa55466b550f654184f0a2 216 PANTHER PTHR34698 1 212 7.8E-70 T 14-09-2016 ccrud_RS04930 d2ff31afadfa55466b550f654184f0a2 216 Gene3D G3DSA:2.40.100.10 92 215 8.6E-49 T 14-09-2016 IPR029000 Cyclophilin-like domain ccrud_RS04930 d2ff31afadfa55466b550f654184f0a2 216 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 7 212 3.6E-44 T 14-09-2016 IPR010016 KipI family ccrud_RS04930 d2ff31afadfa55466b550f654184f0a2 216 SUPERFAMILY SSF50891 92 215 2.31E-40 T 14-09-2016 IPR029000 Cyclophilin-like domain ccrud_RS04930 d2ff31afadfa55466b550f654184f0a2 216 Gene3D G3DSA:3.30.1360.40 2 80 7.7E-15 T 14-09-2016 IPR024946 Arginine repressor C-terminal-like domain ccrud_RS04930 d2ff31afadfa55466b550f654184f0a2 216 SMART SM00796 1 203 1.7E-89 T 14-09-2016 IPR003833 Carboxyltransferase domain, subdomain C and D ccrud_RS04100 4620d2b5c6e77f97be8d36b86a43476d 93 Pfam PF04341 Protein of unknown function, DUF485 2 89 7.2E-32 T 14-09-2016 IPR007436 Protein of unknown function DUF485 ccrud_RS04100 4620d2b5c6e77f97be8d36b86a43476d 93 PANTHER PTHR38441 1 93 1.5E-21 T 14-09-2016 ccrud_RS04100 4620d2b5c6e77f97be8d36b86a43476d 93 PANTHER PTHR38441:SF1 1 93 1.5E-21 T 14-09-2016 ccrud_RS13730 3553482038218df45d1fadef884e7c56 297 SMART SM00382 30 222 2.1E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS13730 3553482038218df45d1fadef884e7c56 297 PANTHER PTHR24220 7 220 1.6E-82 T 14-09-2016 ccrud_RS13730 3553482038218df45d1fadef884e7c56 297 PANTHER PTHR24220:SF160 7 220 1.6E-82 T 14-09-2016 ccrud_RS13730 3553482038218df45d1fadef884e7c56 297 SUPERFAMILY SSF52540 4 219 1.43E-52 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13730 3553482038218df45d1fadef884e7c56 297 Gene3D G3DSA:3.40.50.300 2 231 4.2E-56 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13730 3553482038218df45d1fadef884e7c56 297 Pfam PF00005 ABC transporter 22 160 7.2E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS04940 5534146311c83a5bff0a0f1e9c8bd616 437 Pfam PF01566 Natural resistance-associated macrophage protein 75 392 1.4E-24 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 ccrud_RS04940 5534146311c83a5bff0a0f1e9c8bd616 437 PANTHER PTHR11706:SF2 24 247 9.1E-80 T 14-09-2016 ccrud_RS04940 5534146311c83a5bff0a0f1e9c8bd616 437 PANTHER PTHR11706 24 247 9.1E-80 T 14-09-2016 IPR001046 NRAMP family GO:0005215|GO:0006810|GO:0016020 Reactome: REACT_15518 ccrud_RS00600 5cbe476ac8d49472276d110c41f6f7a2 131 PANTHER PTHR36437:SF1 1 129 5.0E-51 T 14-09-2016 ccrud_RS00600 5cbe476ac8d49472276d110c41f6f7a2 131 SUPERFAMILY SSF54593 1 127 8.99E-25 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS00600 5cbe476ac8d49472276d110c41f6f7a2 131 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 5 124 2.5E-15 T 14-09-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain ccrud_RS00600 5cbe476ac8d49472276d110c41f6f7a2 131 Gene3D G3DSA:3.10.180.10 1 126 4.9E-24 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS00600 5cbe476ac8d49472276d110c41f6f7a2 131 PANTHER PTHR36437 1 129 5.0E-51 T 14-09-2016 ccrud_RS08005 8953c87b359480d01853f96f5f210db4 533 Gene3D G3DSA:3.40.190.10 227 342 4.7E-7 T 14-09-2016 ccrud_RS08005 8953c87b359480d01853f96f5f210db4 533 SUPERFAMILY SSF53850 39 189 3.62E-28 T 14-09-2016 ccrud_RS08005 8953c87b359480d01853f96f5f210db4 533 SUPERFAMILY SSF53850 221 528 3.62E-28 T 14-09-2016 ccrud_RS08005 8953c87b359480d01853f96f5f210db4 533 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 96 344 4.3E-9 T 14-09-2016 IPR000914 Solute-binding protein family 5 domain ccrud_RS08005 8953c87b359480d01853f96f5f210db4 533 Gene3D G3DSA:3.90.76.10 60 187 1.0E-10 T 14-09-2016 ccrud_RS13300 a392be324608ef87eca0ababc1551a66 459 PANTHER PTHR23508:SF1 24 458 5.2E-146 T 14-09-2016 ccrud_RS13300 a392be324608ef87eca0ababc1551a66 459 SUPERFAMILY SSF103473 39 455 3.66E-66 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13300 a392be324608ef87eca0ababc1551a66 459 ProSitePatterns PS00217 Sugar transport proteins signature 2. 156 181 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS13300 a392be324608ef87eca0ababc1551a66 459 Pfam PF07690 Major Facilitator Superfamily 92 394 6.9E-25 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS13300 a392be324608ef87eca0ababc1551a66 459 Gene3D G3DSA:1.20.1250.20 269 457 2.1E-21 T 14-09-2016 ccrud_RS13300 a392be324608ef87eca0ababc1551a66 459 Gene3D G3DSA:1.20.1250.20 43 250 4.0E-25 T 14-09-2016 ccrud_RS13300 a392be324608ef87eca0ababc1551a66 459 PANTHER PTHR23508 24 458 5.2E-146 T 14-09-2016 ccrud_RS00235 a3302180675c42286ce87c574d9ae231 109 Pfam PF01527 Transposase 4 80 6.2E-11 T 14-09-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 ccrud_RS00235 a3302180675c42286ce87c574d9ae231 109 PANTHER PTHR33215:SF1 1 105 4.2E-18 T 14-09-2016 ccrud_RS00235 a3302180675c42286ce87c574d9ae231 109 PANTHER PTHR33215 1 105 4.2E-18 T 14-09-2016 ccrud_RS00235 a3302180675c42286ce87c574d9ae231 109 Gene3D G3DSA:1.10.10.60 7 95 2.7E-27 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS00235 a3302180675c42286ce87c574d9ae231 109 SUPERFAMILY SSF46689 1 96 2.03E-22 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS03210 b901de616ab46817cba70efd11a77c35 225 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 54 222 1.1E-12 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS03210 b901de616ab46817cba70efd11a77c35 225 PANTHER PTHR30450 1 225 1.0E-73 T 14-09-2016 ccrud_RS03210 b901de616ab46817cba70efd11a77c35 225 SUPERFAMILY SSF161098 15 209 2.75E-38 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS03210 b901de616ab46817cba70efd11a77c35 225 Gene3D G3DSA:1.10.3720.10 15 224 6.6E-33 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS03210 b901de616ab46817cba70efd11a77c35 225 PANTHER PTHR30450:SF3 1 225 1.0E-73 T 14-09-2016 ccrud_RS10465 a093cf0b3bed138c30c4564c23f035ca 347 Pfam PF08237 PE-PPE domain 165 239 8.7E-6 T 14-09-2016 IPR013228 PE-PPE, C-terminal ccrud_RS10465 a093cf0b3bed138c30c4564c23f035ca 347 SMART SM01110 95 313 9.5E-17 T 14-09-2016 IPR000675 Cutinase/acetylxylan esterase GO:0008152|GO:0016787 ccrud_RS10465 a093cf0b3bed138c30c4564c23f035ca 347 Gene3D G3DSA:3.40.50.1820 96 325 1.2E-15 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS10465 a093cf0b3bed138c30c4564c23f035ca 347 SUPERFAMILY SSF53474 95 142 2.13E-7 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS10465 a093cf0b3bed138c30c4564c23f035ca 347 SUPERFAMILY SSF53474 183 298 2.13E-7 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS04180 26c76bd4a3733d32e7e84d1a80f4727c 136 PANTHER PTHR31503 1 126 3.1E-32 T 14-09-2016 ccrud_RS04180 26c76bd4a3733d32e7e84d1a80f4727c 136 Pfam PF03733 Inner membrane component domain 70 118 4.6E-13 T 14-09-2016 IPR005185 Inner membrane component domain ccrud_RS04180 26c76bd4a3733d32e7e84d1a80f4727c 136 Pfam PF03733 Inner membrane component domain 4 54 1.8E-17 T 14-09-2016 IPR005185 Inner membrane component domain ccrud_RS04180 26c76bd4a3733d32e7e84d1a80f4727c 136 PIRSF PIRSF028777 1 128 1.9E-49 T 14-09-2016 IPR031308 Uncharacterised conserved protein UCP028777 ccrud_RS06085 a0134546a1d99c89ba05d3be5f7465a1 245 PANTHER PTHR24094 50 244 2.8E-51 T 14-09-2016 ccrud_RS06085 a0134546a1d99c89ba05d3be5f7465a1 245 PANTHER PTHR24094:SF10 50 244 2.8E-51 T 14-09-2016 ccrud_RS06085 a0134546a1d99c89ba05d3be5f7465a1 245 Pfam PF07510 Protein of unknown function (DUF1524) 101 238 1.5E-16 T 14-09-2016 IPR011089 Domain of unknown function DUF1524 ccrud_RS10285 73974a4bca6421d0bd8f48d512e7f3d1 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 306 9.2E-32 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10285 73974a4bca6421d0bd8f48d512e7f3d1 306 Gene3D G3DSA:1.10.3720.10 88 305 1.2E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10285 73974a4bca6421d0bd8f48d512e7f3d1 306 PANTHER PTHR30465:SF0 9 306 3.0E-89 T 14-09-2016 ccrud_RS10285 73974a4bca6421d0bd8f48d512e7f3d1 306 PANTHER PTHR30465 9 306 3.0E-89 T 14-09-2016 ccrud_RS10285 73974a4bca6421d0bd8f48d512e7f3d1 306 SUPERFAMILY SSF161098 89 293 1.28E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS04045 d2ebf94df5b99cf6183d3ea365bbdf28 178 ProDom PD034580 PRECURSOR SIGNAL EXPORTED MB0899C RV0875C/MT0898 MLCB57.27C POSSIBLE 31 165 4.0E-4 T 14-09-2016 IPR024495 Protein of unknown function DUF2771 ccrud_RS04045 d2ebf94df5b99cf6183d3ea365bbdf28 178 Pfam PF10969 Protein of unknown function (DUF2771) 14 172 1.5E-51 T 14-09-2016 IPR024495 Protein of unknown function DUF2771 ccrud_RS04390 729328d0b565e6140e844081b7bab4c0 387 PANTHER PTHR10357 41 351 2.2E-61 T 14-09-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 ccrud_RS04390 729328d0b565e6140e844081b7bab4c0 387 SMART SM00642 11 328 1.1E-44 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS04390 729328d0b565e6140e844081b7bab4c0 387 SUPERFAMILY SSF51445 5 335 7.93E-80 T 14-09-2016 IPR017853 Glycoside hydrolase superfamily ccrud_RS04390 729328d0b565e6140e844081b7bab4c0 387 Gene3D G3DSA:3.20.20.80 5 329 6.9E-74 T 14-09-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 ccrud_RS04390 729328d0b565e6140e844081b7bab4c0 387 Pfam PF00128 Alpha amylase, catalytic domain 124 292 1.3E-26 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS04390 729328d0b565e6140e844081b7bab4c0 387 Pfam PF00128 Alpha amylase, catalytic domain 39 113 3.2E-23 T 14-09-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 ccrud_RS04390 729328d0b565e6140e844081b7bab4c0 387 PANTHER PTHR10357:SF10 41 351 2.2E-61 T 14-09-2016 ccrud_RS08935 db42f460b565afe3f08cff2ccbf1cd86 216 Pfam PF14016 Protein of unknown function (DUF4232) 81 214 3.4E-31 T 14-09-2016 IPR025326 Protein of unknown function DUF4232 ccrud_RS10985 625e42153ee159196c72399655fe09da 154 Gene3D G3DSA:3.10.129.10 7 140 5.7E-30 T 14-09-2016 IPR029069 HotDog domain ccrud_RS10985 625e42153ee159196c72399655fe09da 154 PANTHER PTHR31793 11 154 2.9E-22 T 14-09-2016 ccrud_RS10985 625e42153ee159196c72399655fe09da 154 SUPERFAMILY SSF54637 10 140 8.81E-25 T 14-09-2016 IPR029069 HotDog domain ccrud_RS10985 625e42153ee159196c72399655fe09da 154 Pfam PF13279 Thioesterase-like superfamily 21 130 5.0E-14 T 14-09-2016 ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 PANTHER PTHR33164:SF1 11 165 3.3E-28 T 14-09-2016 ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 116 1.7E-9 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 80 1.7E-9 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 81 96 1.7E-9 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 PRINTS PR00598 Bacterial regulatory protein MarR family signature 131 151 1.7E-9 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 Pfam PF01047 MarR family 46 104 2.2E-12 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 SUPERFAMILY SSF46785 6 156 6.84E-29 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 SMART SM00347 38 141 4.9E-18 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 PANTHER PTHR33164 11 165 3.3E-28 T 14-09-2016 ccrud_RS11285 2f63c3679183a70e517a7e6841a0822c 165 Gene3D G3DSA:1.10.10.10 5 156 1.7E-33 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS03590 712cbfd0dbb4a2f02631d455fc4a196f 157 PIRSF PIRSF034455 3 157 3.3E-45 T 14-09-2016 IPR014591 Uncharacterised conserved protein UCP034455 ccrud_RS03590 712cbfd0dbb4a2f02631d455fc4a196f 157 Pfam PF09900 Predicted membrane protein (DUF2127) 16 152 8.9E-29 T 14-09-2016 IPR021125 Protein of unknown function DUF2127 ccrud_RS07600 df7837802a05fd1c1a24d6f43f0c61c8 342 Pfam PF02628 Cytochrome oxidase assembly protein 30 302 1.3E-14 T 14-09-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 ccrud_RS07600 df7837802a05fd1c1a24d6f43f0c61c8 342 PANTHER PTHR35457:SF1 1 328 9.5E-27 T 14-09-2016 ccrud_RS07600 df7837802a05fd1c1a24d6f43f0c61c8 342 PANTHER PTHR35457 1 328 9.5E-27 T 14-09-2016 ccrud_RS01910 49b21d8eeb187151b0b931917c82dc9f 347 PANTHER PTHR12526 75 277 8.2E-17 T 14-09-2016 ccrud_RS01910 49b21d8eeb187151b0b931917c82dc9f 347 PANTHER PTHR12526:SF141 75 277 8.2E-17 T 14-09-2016 ccrud_RS01910 49b21d8eeb187151b0b931917c82dc9f 347 SUPERFAMILY SSF53756 20 308 4.4E-37 T 14-09-2016 ccrud_RS01910 49b21d8eeb187151b0b931917c82dc9f 347 Pfam PF00534 Glycosyl transferases group 1 176 287 3.0E-15 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 ccrud_RS01910 49b21d8eeb187151b0b931917c82dc9f 347 Gene3D G3DSA:3.40.50.2000 170 340 1.9E-12 T 14-09-2016 ccrud_RS01910 49b21d8eeb187151b0b931917c82dc9f 347 Pfam PF13439 Glycosyltransferase Family 4 22 147 1.5E-9 T 14-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain ccrud_RS13375 6dd9c6f985a12d310c77e6f31d161d24 187 SUPERFAMILY SSF55724 42 187 2.3E-61 T 14-09-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich ccrud_RS13375 6dd9c6f985a12d310c77e6f31d161d24 187 Pfam PF09449 Domain of unknown function (DUF2020) 46 187 1.4E-71 T 14-09-2016 IPR018567 Domain of unknown function DUF2020 ccrud_RS13375 6dd9c6f985a12d310c77e6f31d161d24 187 Gene3D G3DSA:3.40.1000.10 40 187 2.1E-67 T 14-09-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich ccrud_RS00565 9028997539366d99341a1534971daaf3 315 Gene3D G3DSA:3.20.20.100 15 313 1.6E-73 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS00565 9028997539366d99341a1534971daaf3 315 SUPERFAMILY SSF51430 9 313 1.96E-73 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS00565 9028997539366d99341a1534971daaf3 315 PANTHER PTHR11732:SF132 5 308 2.1E-89 T 14-09-2016 ccrud_RS00565 9028997539366d99341a1534971daaf3 315 Pfam PF00248 Aldo/keto reductase family 18 311 1.0E-59 T 14-09-2016 IPR023210 NADP-dependent oxidoreductase domain ccrud_RS00565 9028997539366d99341a1534971daaf3 315 PANTHER PTHR11732 5 308 2.1E-89 T 14-09-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 Pfam PF00815 Histidinol dehydrogenase 23 433 1.4E-151 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 Gene3D G3DSA:3.40.50.1980 30 244 2.4E-74 T 14-09-2016 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 35 432 7.7E-138 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PRINTS PR00083 Histidinol dehydrogenase signature 173 199 1.5E-80 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PRINTS PR00083 Histidinol dehydrogenase signature 136 162 1.5E-80 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PRINTS PR00083 Histidinol dehydrogenase signature 326 351 1.5E-80 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PRINTS PR00083 Histidinol dehydrogenase signature 35 59 1.5E-80 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PRINTS PR00083 Histidinol dehydrogenase signature 256 275 1.5E-80 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PRINTS PR00083 Histidinol dehydrogenase signature 234 255 1.5E-80 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PRINTS PR00083 Histidinol dehydrogenase signature 367 385 1.5E-80 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PRINTS PR00083 Histidinol dehydrogenase signature 205 230 1.5E-80 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PANTHER PTHR21256 13 439 1.3E-170 T 14-09-2016 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 234 266 - T 14-09-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 7 433 38.75 T 14-09-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 SUPERFAMILY SSF53720 31 436 1.29E-66 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS09200 1a249c938aa530308b9e721ea5f4f2c9 442 PIRSF PIRSF000099 1 436 7.5E-149 T 14-09-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 ccrud_RS05105 28a818902d2e472eb9e3384b2aa5df9b 235 TIGRFAM TIGR03843 TIGR03843: conserved hypothetical protein 13 235 6.4E-74 T 14-09-2016 IPR022292 Conserved hypothetical protein CHP03843 ccrud_RS05105 28a818902d2e472eb9e3384b2aa5df9b 235 Pfam PF00454 Phosphatidylinositol 3- and 4-kinase 81 164 3.2E-7 T 14-09-2016 IPR000403 Phosphatidylinositol 3-/4-kinase, catalytic domain GO:0016301 ccrud_RS07110 f3cb63db17135d0884a7bdad3dd3da43 438 PANTHER PTHR10108 188 345 1.0E-14 T 14-09-2016 ccrud_RS07110 f3cb63db17135d0884a7bdad3dd3da43 438 PANTHER PTHR10108:SF795 363 430 1.0E-14 T 14-09-2016 ccrud_RS07110 f3cb63db17135d0884a7bdad3dd3da43 438 PANTHER PTHR10108:SF795 188 345 1.0E-14 T 14-09-2016 ccrud_RS07110 f3cb63db17135d0884a7bdad3dd3da43 438 Gene3D G3DSA:3.40.50.150 188 430 5.6E-32 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07110 f3cb63db17135d0884a7bdad3dd3da43 438 SUPERFAMILY SSF53335 189 429 1.13E-25 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07110 f3cb63db17135d0884a7bdad3dd3da43 438 Pfam PF02353 Mycolic acid cyclopropane synthetase 190 427 2.8E-19 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS07110 f3cb63db17135d0884a7bdad3dd3da43 438 PANTHER PTHR10108 363 430 1.0E-14 T 14-09-2016 ccrud_RS01560 2fb13143fee81c28375eb80b23a6d58f 189 Pfam PF00482 Type II secretion system (T2SS), protein F 54 175 3.7E-12 T 14-09-2016 IPR018076 Type II secretion system F domain ccrud_RS00950 5fbba4d54591b4b3e5cae43234639293 140 Gene3D G3DSA:3.40.630.30 20 124 1.9E-17 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS00950 5fbba4d54591b4b3e5cae43234639293 140 SUPERFAMILY SSF55729 14 127 3.71E-18 T 14-09-2016 IPR016181 Acyl-CoA N-acyltransferase ccrud_RS00950 5fbba4d54591b4b3e5cae43234639293 140 Pfam PF13508 Acetyltransferase (GNAT) domain 55 115 9.9E-11 T 14-09-2016 IPR000182 GNAT domain GO:0008080 ccrud_RS13870 3f4c36df6ec1aae73119d86ef9e2962d 116 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 18 110 3.9E-19 T 14-09-2016 IPR008407 Branched-chain amino acid transport, AzlD ccrud_RS13870 3f4c36df6ec1aae73119d86ef9e2962d 116 PIRSF PIRSF003203 8 115 3.0E-37 T 14-09-2016 IPR008407 Branched-chain amino acid transport, AzlD ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 TIGRFAM TIGR00744 ROK_glcA_fam: ROK family protein (putative glucokinase) 10 321 3.2E-78 T 14-09-2016 IPR004654 Glucokinase ROK GO:0004340|GO:0005737|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 Gene3D G3DSA:3.30.420.40 140 288 8.9E-44 T 14-09-2016 ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 Gene3D G3DSA:3.30.420.40 6 139 1.1E-40 T 14-09-2016 ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 SUPERFAMILY SSF53067 9 319 1.34E-60 T 14-09-2016 ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 PANTHER PTHR18964:SF123 8 197 4.0E-70 T 14-09-2016 ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 Pfam PF00480 ROK family 10 317 3.6E-69 T 14-09-2016 IPR000600 ROK family ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 PANTHER PTHR18964:SF123 220 323 4.0E-70 T 14-09-2016 ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 ProSitePatterns PS01125 ROK family signature. 135 162 - T 14-09-2016 IPR000600 ROK family ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 PANTHER PTHR18964 220 323 4.0E-70 T 14-09-2016 ccrud_RS09585 e178951bebdd6328b996d33ae940a264 323 PANTHER PTHR18964 8 197 4.0E-70 T 14-09-2016 ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PRINTS PR01806 Virulence factor MviN signature 102 121 1.5E-8 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PRINTS PR01806 Virulence factor MviN signature 434 453 1.5E-8 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PRINTS PR01806 Virulence factor MviN signature 336 362 1.5E-8 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PRINTS PR01806 Virulence factor MviN signature 199 223 1.5E-8 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PRINTS PR01806 Virulence factor MviN signature 223 244 1.5E-8 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PANTHER PTHR11206:SF90 62 72 2.7E-14 T 14-09-2016 ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PANTHER PTHR11206 141 146 2.7E-14 T 14-09-2016 ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PANTHER PTHR11206 293 521 2.7E-14 T 14-09-2016 ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PANTHER PTHR11206 589 599 2.7E-14 T 14-09-2016 ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 Pfam PF03023 MviN-like protein 105 544 1.2E-89 T 14-09-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PANTHER PTHR11206:SF90 141 146 2.7E-14 T 14-09-2016 ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PANTHER PTHR11206:SF90 293 521 2.7E-14 T 14-09-2016 ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PANTHER PTHR11206:SF90 589 599 2.7E-14 T 14-09-2016 ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 Gene3D G3DSA:2.60.120.260 977 1047 1.4E-6 T 14-09-2016 IPR008979 Galactose-binding domain-like ccrud_RS13900 ca473c2de610bde453e56868c4ec082e 1106 PANTHER PTHR11206 62 72 2.7E-14 T 14-09-2016 ccrud_RS01305 4ec282bb5e641422366a4ba17f5ff706 250 SUPERFAMILY SSF52317 17 225 7.18E-22 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS01305 4ec282bb5e641422366a4ba17f5ff706 250 PANTHER PTHR21343 4 248 4.4E-62 T 14-09-2016 ccrud_RS01305 4ec282bb5e641422366a4ba17f5ff706 250 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 5 214 4.0E-38 T 14-09-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 ccrud_RS01305 4ec282bb5e641422366a4ba17f5ff706 250 PANTHER PTHR21343:SF9 4 248 4.4E-62 T 14-09-2016 ccrud_RS01305 4ec282bb5e641422366a4ba17f5ff706 250 Gene3D G3DSA:3.40.50.880 21 225 8.6E-22 T 14-09-2016 IPR029062 Class I glutamine amidotransferase-like ccrud_RS11600 494d0eda15a6a647afd05c4abf46a44e 307 PANTHER PTHR30425 23 303 1.8E-89 T 14-09-2016 ccrud_RS11600 494d0eda15a6a647afd05c4abf46a44e 307 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 33 304 4.8E-80 T 14-09-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 ccrud_RS11600 494d0eda15a6a647afd05c4abf46a44e 307 SUPERFAMILY SSF161098 42 294 1.18E-35 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11600 494d0eda15a6a647afd05c4abf46a44e 307 Gene3D G3DSA:1.10.3720.10 34 304 2.2E-39 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11600 494d0eda15a6a647afd05c4abf46a44e 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 300 3.6E-25 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11600 494d0eda15a6a647afd05c4abf46a44e 307 PANTHER PTHR30425:SF0 23 303 1.8E-89 T 14-09-2016 ccrud_RS02925 9db211f2a84b8ced39dbb1367eb69baf 142 Pfam PF09656 Putative transmembrane protein (PGPGW) 32 84 9.9E-20 T 14-09-2016 IPR019099 Uncharacterised protein family PGPGW, transmembrane ccrud_RS02925 9db211f2a84b8ced39dbb1367eb69baf 142 TIGRFAM TIGR02611 TIGR02611: TIGR02611 family protein 8 127 9.4E-47 T 14-09-2016 IPR013434 Conserved hypothetical protein CHP02611 ccrud_RS02995 bef4746be91c2eccf33fa0a78f506ed8 285 Gene3D G3DSA:3.40.50.1820 29 253 5.4E-23 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS02995 bef4746be91c2eccf33fa0a78f506ed8 285 SUPERFAMILY SSF53474 8 266 2.85E-22 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS02995 bef4746be91c2eccf33fa0a78f506ed8 285 Pfam PF07224 Chlorophyllase 33 132 4.5E-5 T 14-09-2016 IPR017395 Chlorophyllase GO:0015996|GO:0047746 KEGG: 00860+3.1.1.14|MetaCyc: PWY-5098|MetaCyc: PWY-6927|MetaCyc: PWY-7164|UniPathway: UPA00674 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 Gene3D G3DSA:1.10.287.610 100 152 6.1E-21 T 14-09-2016 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 227 1.7E-103 T 14-09-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 226 41.301 T 14-09-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 Gene3D G3DSA:3.40.50.10490 159 247 4.2E-68 T 14-09-2016 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 Gene3D G3DSA:3.40.50.10490 23 99 4.2E-68 T 14-09-2016 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 PANTHER PTHR12534 1 268 6.9E-115 T 14-09-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 14-09-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 Pfam PF00318 Ribosomal protein S2 9 225 1.8E-93 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 PRINTS PR00395 Ribosomal protein S2 signature 37 46 4.4E-39 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 PRINTS PR00395 Ribosomal protein S2 signature 87 104 4.4E-39 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 PRINTS PR00395 Ribosomal protein S2 signature 6 24 4.4E-39 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 PRINTS PR00395 Ribosomal protein S2 signature 159 176 4.4E-39 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 PRINTS PR00395 Ribosomal protein S2 signature 176 187 4.4E-39 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 PRINTS PR00395 Ribosomal protein S2 signature 197 211 4.4E-39 T 14-09-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 ccrud_RS08825 be11677ea8203cc729423b042ad6d5ba 268 SUPERFAMILY SSF52313 6 231 1.07E-89 T 14-09-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain ccrud_RS10450 80d83fe19511dbb9ef5577d9890bd59a 236 PANTHER PTHR23029:SF1 2 187 1.4E-48 T 14-09-2016 ccrud_RS10450 80d83fe19511dbb9ef5577d9890bd59a 236 PANTHER PTHR23029 2 187 1.4E-48 T 14-09-2016 ccrud_RS10450 80d83fe19511dbb9ef5577d9890bd59a 236 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 189 5.2E-53 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS10450 80d83fe19511dbb9ef5577d9890bd59a 236 SMART SM00855 4 160 6.8E-24 T 14-09-2016 IPR013078 Histidine phosphatase superfamily, clade-1 ccrud_RS10450 80d83fe19511dbb9ef5577d9890bd59a 236 Gene3D G3DSA:3.40.50.1240 2 188 1.7E-58 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS10450 80d83fe19511dbb9ef5577d9890bd59a 236 SUPERFAMILY SSF53254 2 189 1.2E-53 T 14-09-2016 IPR029033 Histidine phosphatase superfamily ccrud_RS10450 80d83fe19511dbb9ef5577d9890bd59a 236 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 7 16 - T 14-09-2016 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824|GO:0008152 UniPathway: UPA00109 ccrud_RS13660 efa980765861e8bf8b9d6b716aa758f2 443 ProSitePatterns PS00216 Sugar transport proteins signature 1. 96 112 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS13660 efa980765861e8bf8b9d6b716aa758f2 443 Pfam PF07690 Major Facilitator Superfamily 56 392 2.8E-42 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS13660 efa980765861e8bf8b9d6b716aa758f2 443 SUPERFAMILY SSF103473 36 430 2.75E-72 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS13660 efa980765861e8bf8b9d6b716aa758f2 443 PANTHER PTHR24064 55 422 1.3E-52 T 14-09-2016 ccrud_RS13660 efa980765861e8bf8b9d6b716aa758f2 443 Gene3D G3DSA:1.20.1250.20 42 223 1.5E-31 T 14-09-2016 ccrud_RS13660 efa980765861e8bf8b9d6b716aa758f2 443 Gene3D G3DSA:1.20.1250.20 251 428 3.1E-22 T 14-09-2016 ccrud_RS00145 8238fe62947d15b0cebe0582b426ecb2 90 Pfam PF06781 Uncharacterised protein family (UPF0233) 1 90 2.9E-32 T 14-09-2016 IPR009619 Cell division protein CrgA ccrud_RS00145 8238fe62947d15b0cebe0582b426ecb2 90 Hamap MF_00631 Cell division protein CrgA [crgA]. 1 90 22.82 T 14-09-2016 IPR009619 Cell division protein CrgA ccrud_RS13565 f3d8298ea79a279d78b421dc6efdaa33 383 SUPERFAMILY SSF103365 4 382 1.57E-121 T 14-09-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 ccrud_RS13565 f3d8298ea79a279d78b421dc6efdaa33 383 PANTHER PTHR11118 2 382 4.9E-137 T 14-09-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 ccrud_RS13565 f3d8298ea79a279d78b421dc6efdaa33 383 Pfam PF01139 tRNA-splicing ligase RtcB 18 382 4.9E-113 T 14-09-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 ccrud_RS13565 f3d8298ea79a279d78b421dc6efdaa33 383 PANTHER PTHR11118:SF3 2 382 4.9E-137 T 14-09-2016 ccrud_RS05945 6179e5502793f00eb04a13edc98e39e7 313 Gene3D G3DSA:3.40.50.150 26 293 3.8E-73 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS05945 6179e5502793f00eb04a13edc98e39e7 313 SUPERFAMILY SSF53335 39 276 8.12E-34 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS05945 6179e5502793f00eb04a13edc98e39e7 313 PANTHER PTHR12176:SF22 32 244 3.2E-34 T 14-09-2016 ccrud_RS05945 6179e5502793f00eb04a13edc98e39e7 313 PANTHER PTHR12176 32 244 3.2E-34 T 14-09-2016 ccrud_RS03350 8f62d739c7b17e7d68e27cd8110ad689 318 Gene3D G3DSA:3.40.50.1980 181 317 9.5E-19 T 14-09-2016 ccrud_RS03350 8f62d739c7b17e7d68e27cd8110ad689 318 PANTHER PTHR30535 39 317 4.3E-24 T 14-09-2016 ccrud_RS03350 8f62d739c7b17e7d68e27cd8110ad689 318 Pfam PF01497 Periplasmic binding protein 61 294 1.3E-27 T 14-09-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 ccrud_RS03350 8f62d739c7b17e7d68e27cd8110ad689 318 SUPERFAMILY SSF53807 50 317 1.06E-40 T 14-09-2016 ccrud_RS03350 8f62d739c7b17e7d68e27cd8110ad689 318 Gene3D G3DSA:3.40.50.1980 57 180 3.1E-16 T 14-09-2016 ccrud_RS11470 e74ed3838c38fd7743fa47f9da8996af 342 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 138 222 8.6E-9 T 14-09-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 ccrud_RS11470 e74ed3838c38fd7743fa47f9da8996af 342 SUPERFAMILY SSF55347 134 301 8.01E-26 T 14-09-2016 ccrud_RS11470 e74ed3838c38fd7743fa47f9da8996af 342 Gene3D G3DSA:3.40.50.720 1 141 3.6E-36 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11470 e74ed3838c38fd7743fa47f9da8996af 342 SUPERFAMILY SSF51735 2 157 2.54E-37 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS11470 e74ed3838c38fd7743fa47f9da8996af 342 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 2 115 1.7E-23 T 14-09-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 ccrud_RS11470 e74ed3838c38fd7743fa47f9da8996af 342 PANTHER PTHR22604:SF120 2 331 5.7E-64 T 14-09-2016 ccrud_RS11470 e74ed3838c38fd7743fa47f9da8996af 342 PANTHER PTHR22604 2 331 5.7E-64 T 14-09-2016 ccrud_RS11470 e74ed3838c38fd7743fa47f9da8996af 342 Gene3D G3DSA:3.30.360.10 142 333 1.8E-34 T 14-09-2016 ccrud_RS02195 52ab87d01a1f197212c85767306f692b 461 ProSitePatterns PS00216 Sugar transport proteins signature 1. 301 318 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS02195 52ab87d01a1f197212c85767306f692b 461 Pfam PF00083 Sugar (and other) transporter 27 225 9.2E-20 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS02195 52ab87d01a1f197212c85767306f692b 461 Pfam PF00083 Sugar (and other) transporter 271 440 1.8E-14 T 14-09-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 ccrud_RS02195 52ab87d01a1f197212c85767306f692b 461 SUPERFAMILY SSF103473 9 439 1.7E-60 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS02195 52ab87d01a1f197212c85767306f692b 461 Gene3D G3DSA:1.20.1250.20 21 227 2.5E-23 T 14-09-2016 ccrud_RS02195 52ab87d01a1f197212c85767306f692b 461 Gene3D G3DSA:1.20.1250.20 254 431 2.3E-19 T 14-09-2016 ccrud_RS02195 52ab87d01a1f197212c85767306f692b 461 PANTHER PTHR23508:SF19 12 449 2.1E-154 T 14-09-2016 ccrud_RS02195 52ab87d01a1f197212c85767306f692b 461 PANTHER PTHR23508 12 449 2.1E-154 T 14-09-2016 ccrud_RS12365 94e69bd139b0359d840beb58b20b07c6 70 Pfam PF11662 Protein of unknown function (DUF3263) 2 64 4.2E-26 T 14-09-2016 IPR021678 Protein of unknown function DUF3263 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 PANTHER PTHR11938 42 323 2.8E-119 T 14-09-2016 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 SUPERFAMILY SSF51971 142 333 1.41E-54 T 14-09-2016 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 SUPERFAMILY SSF51971 363 420 1.41E-54 T 14-09-2016 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 TIGRFAM TIGR01317 GOGAT_sm_gam: glutamate synthase, NADH/NADPH, small subunit 3 343 5.0E-154 T 14-09-2016 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 GO:0006537|GO:0016639|GO:0055114 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 Gene3D G3DSA:1.10.1060.10 2 146 2.1E-40 T 14-09-2016 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 SUPERFAMILY SSF46548 5 154 4.71E-38 T 14-09-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 PANTHER PTHR11938:SF75 42 323 2.8E-119 T 14-09-2016 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 PANTHER PTHR11938:SF75 348 488 2.8E-119 T 14-09-2016 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 Gene3D G3DSA:3.40.50.720 147 228 1.3E-37 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 Gene3D G3DSA:3.40.50.720 420 494 1.3E-37 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 PANTHER PTHR11938 348 488 2.8E-119 T 14-09-2016 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 26 130 3.3E-23 T 14-09-2016 IPR028261 Dihydroprymidine dehydrogenase domain II ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 145 312 4.5E-16 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 Gene3D G3DSA:3.50.50.60 229 419 1.9E-37 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 PRINTS PR00419 Adrenodoxin reductase family signature 145 167 2.6E-20 T 14-09-2016 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 PRINTS PR00419 Adrenodoxin reductase family signature 279 293 2.6E-20 T 14-09-2016 ccrud_RS00980 984f4078d881ce7a235b0d255b6a130b 506 PRINTS PR00419 Adrenodoxin reductase family signature 168 181 2.6E-20 T 14-09-2016 ccrud_RS08000 7b583c4e1e270d1a5db88ac9884f7c05 184 SUPERFAMILY SSF53271 16 176 2.1E-39 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS08000 7b583c4e1e270d1a5db88ac9884f7c05 184 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 16 184 33.757 T 14-09-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 ccrud_RS08000 7b583c4e1e270d1a5db88ac9884f7c05 184 Pfam PF00156 Phosphoribosyl transferase domain 48 154 4.2E-12 T 14-09-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 ccrud_RS08000 7b583c4e1e270d1a5db88ac9884f7c05 184 PANTHER PTHR32315 1 179 1.2E-59 T 14-09-2016 ccrud_RS08000 7b583c4e1e270d1a5db88ac9884f7c05 184 Gene3D G3DSA:3.40.50.2020 14 179 4.8E-50 T 14-09-2016 IPR029057 Phosphoribosyltransferase-like ccrud_RS06650 18477da113660d4cb19679d0f162a54f 235 Gene3D G3DSA:3.20.20.190 2 224 1.8E-39 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 ccrud_RS06650 18477da113660d4cb19679d0f162a54f 235 PANTHER PTHR23344 3 226 8.3E-30 T 14-09-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 ccrud_RS06650 18477da113660d4cb19679d0f162a54f 235 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 6 215 4.1E-18 T 14-09-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 ccrud_RS06650 18477da113660d4cb19679d0f162a54f 235 SUPERFAMILY SSF51695 3 225 1.88E-39 T 14-09-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 ccrud_RS10980 41915a3a54acbe737f3a9ef56db37f3d 209 PIRSF PIRSF012637 1 209 2.1E-86 T 14-09-2016 IPR016601 Uncharacterised conserved protein UCP012637 ccrud_RS05070 73d8eae7b252c820ec7474bd63fb4f5e 170 Pfam PF13563 2'-5' RNA ligase superfamily 19 136 3.7E-7 T 14-09-2016 ccrud_RS05070 73d8eae7b252c820ec7474bd63fb4f5e 170 SUPERFAMILY SSF55144 7 161 5.75E-23 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase ccrud_RS05070 73d8eae7b252c820ec7474bd63fb4f5e 170 Gene3D G3DSA:3.90.1140.10 6 158 6.5E-18 T 14-09-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase ccrud_RS11010 4c9d4b37d60d035d71d70915d24cae45 357 SUPERFAMILY SSF53850 32 333 6.92E-54 T 14-09-2016 ccrud_RS11010 4c9d4b37d60d035d71d70915d24cae45 357 Gene3D G3DSA:3.40.190.10 279 315 6.6E-26 T 14-09-2016 ccrud_RS11010 4c9d4b37d60d035d71d70915d24cae45 357 Gene3D G3DSA:3.40.190.10 2 134 6.6E-26 T 14-09-2016 ccrud_RS11010 4c9d4b37d60d035d71d70915d24cae45 357 PANTHER PTHR30006 24 297 9.1E-35 T 14-09-2016 ccrud_RS11010 4c9d4b37d60d035d71d70915d24cae45 357 Gene3D G3DSA:3.40.190.10 136 278 1.0E-23 T 14-09-2016 ccrud_RS11010 4c9d4b37d60d035d71d70915d24cae45 357 Pfam PF13343 Bacterial extracellular solute-binding protein 89 331 5.4E-39 T 14-09-2016 ccrud_RS07700 f584a0de66ac9ac1531b7f5017e25514 193 Pfam PF10756 Bacterial PH domain 114 183 3.6E-23 T 14-09-2016 IPR019692 Protein of unknown function DUF2581 ccrud_RS13065 6c3e32e0a8d029df78c17a5e6653833a 516 SUPERFAMILY SSF52096 268 516 7.46E-74 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS13065 6c3e32e0a8d029df78c17a5e6653833a 516 SUPERFAMILY SSF52096 7 249 2.81E-60 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS13065 6c3e32e0a8d029df78c17a5e6653833a 516 PANTHER PTHR22855 8 516 1.5E-233 T 14-09-2016 ccrud_RS13065 6c3e32e0a8d029df78c17a5e6653833a 516 Pfam PF01039 Carboxyl transferase domain 34 512 1.5E-142 T 14-09-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 ccrud_RS13065 6c3e32e0a8d029df78c17a5e6653833a 516 Gene3D G3DSA:3.90.226.10 12 242 2.1E-56 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS13065 6c3e32e0a8d029df78c17a5e6653833a 516 Gene3D G3DSA:3.90.226.10 243 515 2.0E-76 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS13065 6c3e32e0a8d029df78c17a5e6653833a 516 PANTHER PTHR22855:SF14 8 516 1.5E-233 T 14-09-2016 ccrud_RS12685 f05ab5a8c9491b0660d49fc5a0025fac 122 Gene3D G3DSA:3.30.530.20 3 121 1.0E-36 T 14-09-2016 IPR023393 START-like domain ccrud_RS12685 f05ab5a8c9491b0660d49fc5a0025fac 122 SUPERFAMILY SSF55961 2 121 2.75E-16 T 14-09-2016 ccrud_RS04430 168f3896c880f7dd5d771069e006a2d9 182 Pfam PF09348 Domain of unknown function (DUF1990) 24 180 1.4E-48 T 14-09-2016 IPR018960 Domain of unknown function DUF1990 ccrud_RS04430 168f3896c880f7dd5d771069e006a2d9 182 PANTHER PTHR34202 16 182 4.6E-43 T 14-09-2016 ccrud_RS04430 168f3896c880f7dd5d771069e006a2d9 182 PANTHER PTHR34202:SF3 16 182 4.6E-43 T 14-09-2016 ccrud_RS04430 168f3896c880f7dd5d771069e006a2d9 182 PIRSF PIRSF010260 4 182 6.3E-51 T 14-09-2016 IPR014457 Uncharacterised conserved protein UCP010260 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 Gene3D G3DSA:3.50.50.60 4 146 1.7E-67 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 Gene3D G3DSA:3.50.50.60 221 327 1.7E-67 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 Gene3D G3DSA:3.50.50.60 514 576 1.7E-67 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 PANTHER PTHR11632:SF59 11 137 4.0E-154 T 14-09-2016 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 434 454 2.4E-6 T 14-09-2016 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 15 37 2.4E-6 T 14-09-2016 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 SUPERFAMILY SSF56425 350 510 3.14E-35 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 PANTHER PTHR11632 11 137 4.0E-154 T 14-09-2016 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 Gene3D G3DSA:3.90.700.10 355 509 4.6E-36 T 14-09-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 PANTHER PTHR11632 217 574 4.0E-154 T 14-09-2016 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 SUPERFAMILY SSF51905 7 126 1.6E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 SUPERFAMILY SSF51905 230 329 1.6E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 SUPERFAMILY SSF51905 517 582 1.6E-43 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 PANTHER PTHR11632:SF59 217 574 4.0E-154 T 14-09-2016 ccrud_RS11780 b2b5d2088cc0f32110bb64e37eea50fd 595 Pfam PF00890 FAD binding domain 15 558 2.9E-85 T 14-09-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain ccrud_RS00705 4d92218c37472b6dffc0842c3459a858 116 Pfam PF03724 META domain 34 85 1.5E-12 T 14-09-2016 IPR005184 Domain of unknown function DUF306, Meta/HslJ ccrud_RS01205 d206c24038d613238eedca5bb0ad1f49 67 Gene3D G3DSA:1.10.1470.10 4 64 3.9E-14 T 14-09-2016 IPR008462 CsbD-like ccrud_RS01205 d206c24038d613238eedca5bb0ad1f49 67 SUPERFAMILY SSF69047 5 63 3.53E-8 T 14-09-2016 IPR008462 CsbD-like ccrud_RS01205 d206c24038d613238eedca5bb0ad1f49 67 Pfam PF05532 CsbD-like 5 54 1.9E-14 T 14-09-2016 IPR008462 CsbD-like ccrud_RS11030 023ec76c616f91414c61715ef7ce4936 193 Gene3D G3DSA:2.40.50.140 5 114 1.9E-15 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS11030 023ec76c616f91414c61715ef7ce4936 193 SUPERFAMILY SSF50249 4 117 1.3E-11 T 14-09-2016 IPR012340 Nucleic acid-binding, OB-fold ccrud_RS11030 023ec76c616f91414c61715ef7ce4936 193 Pfam PF00436 Single-strand binding protein family 6 90 1.0E-9 T 14-09-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 ccrud_RS13255 7cf258442a3f3eb50e1f86a3f96b77ed 323 Pfam PF07859 alpha/beta hydrolase fold 88 297 1.2E-47 T 14-09-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 ccrud_RS13255 7cf258442a3f3eb50e1f86a3f96b77ed 323 SUPERFAMILY SSF53474 38 321 1.87E-54 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS13255 7cf258442a3f3eb50e1f86a3f96b77ed 323 PANTHER PTHR23024:SF144 63 322 5.8E-66 T 14-09-2016 ccrud_RS13255 7cf258442a3f3eb50e1f86a3f96b77ed 323 PANTHER PTHR23024 63 322 5.8E-66 T 14-09-2016 ccrud_RS13255 7cf258442a3f3eb50e1f86a3f96b77ed 323 Gene3D G3DSA:3.40.50.1820 9 322 1.6E-72 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS12410 6b2e682ac2f2f8315796ac7815aa59cc 308 SMART SM00382 26 204 1.1E-7 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12410 6b2e682ac2f2f8315796ac7815aa59cc 308 Pfam PF00005 ABC transporter 18 156 9.3E-25 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS12410 6b2e682ac2f2f8315796ac7815aa59cc 308 PANTHER PTHR24220:SF523 3 217 6.7E-113 T 14-09-2016 ccrud_RS12410 6b2e682ac2f2f8315796ac7815aa59cc 308 PANTHER PTHR24220 3 217 6.7E-113 T 14-09-2016 ccrud_RS12410 6b2e682ac2f2f8315796ac7815aa59cc 308 Gene3D G3DSA:3.40.50.300 1 224 1.4E-59 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12410 6b2e682ac2f2f8315796ac7815aa59cc 308 SUPERFAMILY SSF52540 2 221 1.52E-54 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09650 077648a2eb9b69470ef9f007ae331632 277 Pfam PF11241 Protein of unknown function (DUF3043) 82 274 5.0E-53 T 14-09-2016 IPR021403 Protein of unknown function DUF3043 ccrud_RS08740 485414397b1bb3a2fc09ce857abb60b7 621 PANTHER PTHR30627:SF4 48 620 3.0E-84 T 14-09-2016 ccrud_RS08740 485414397b1bb3a2fc09ce857abb60b7 621 Gene3D G3DSA:3.90.1310.10 268 313 9.5E-4 T 14-09-2016 ccrud_RS08740 485414397b1bb3a2fc09ce857abb60b7 621 SUPERFAMILY SSF54427 36 136 2.94E-5 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS08740 485414397b1bb3a2fc09ce857abb60b7 621 Pfam PF05223 NTF2-like N-terminal transpeptidase domain 33 140 3.9E-25 T 14-09-2016 IPR007887 NTF2-like N-terminal transpeptidase GO:0046677 ccrud_RS08740 485414397b1bb3a2fc09ce857abb60b7 621 SUPERFAMILY SSF56601 308 592 4.23E-60 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS08740 485414397b1bb3a2fc09ce857abb60b7 621 Gene3D G3DSA:3.40.710.10 314 600 4.7E-60 T 14-09-2016 IPR012338 Beta-lactamase/transpeptidase-like ccrud_RS08740 485414397b1bb3a2fc09ce857abb60b7 621 PANTHER PTHR30627 48 620 3.0E-84 T 14-09-2016 ccrud_RS08740 485414397b1bb3a2fc09ce857abb60b7 621 Pfam PF00905 Penicillin binding protein transpeptidase domain 329 590 5.6E-44 T 14-09-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 SUPERFAMILY SSF52540 20 321 4.38E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 TIGRFAM TIGR00554 panK_bact: pantothenate kinase 23 322 7.6E-125 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 PANTHER PTHR10285 284 323 6.3E-148 T 14-09-2016 ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 PIRSF PIRSF000545 13 323 6.2E-142 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 Gene3D G3DSA:3.40.50.300 22 322 3.4E-104 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 PANTHER PTHR10285:SF7 284 323 6.3E-148 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 PANTHER PTHR10285 13 268 6.3E-148 T 14-09-2016 ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 103 240 8.9E-13 T 14-09-2016 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0008152|GO:0016301 ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 PANTHER PTHR10285:SF7 13 268 6.3E-148 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 ccrud_RS04890 bfdd90a7a200f91961e1617359c7e666 323 Hamap MF_00215 Pantothenate kinase [coaA]. 1 323 173.391 T 14-09-2016 IPR004566 Bacterial pantothenate kinase GO:0004594|GO:0005524|GO:0005737|GO:0015937 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 ccrud_RS11390 f4d9686b28670f745726cdc85f2f8321 137 SUPERFAMILY SSF50475 5 128 3.85E-22 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 ccrud_RS11390 f4d9686b28670f745726cdc85f2f8321 137 Gene3D G3DSA:2.30.110.10 2 136 4.5E-45 T 14-09-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 ccrud_RS11390 f4d9686b28670f745726cdc85f2f8321 137 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 9 126 9.6E-23 T 14-09-2016 IPR024747 Pyridoxamine 5'-phosphate oxidase-related ccrud_RS02675 0a19fbca364475e6424352ce202f75a9 325 Gene3D G3DSA:3.40.50.1110 58 325 3.0E-44 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain ccrud_RS02675 0a19fbca364475e6424352ce202f75a9 325 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 66 315 1.1E-13 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain ccrud_RS02675 0a19fbca364475e6424352ce202f75a9 325 SUPERFAMILY SSF52266 63 324 2.0E-61 T 14-09-2016 IPR013830 SGNH hydrolase-type esterase domain ccrud_RS02165 7679e70850ec03a6e3082101131616e7 361 PANTHER PTHR10000:SF30 154 333 9.0E-77 T 14-09-2016 ccrud_RS02165 7679e70850ec03a6e3082101131616e7 361 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 105 307 4.0E-69 T 14-09-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial ccrud_RS02165 7679e70850ec03a6e3082101131616e7 361 PANTHER PTHR10000 154 333 9.0E-77 T 14-09-2016 ccrud_RS02165 7679e70850ec03a6e3082101131616e7 361 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 105 295 7.9E-18 T 14-09-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 ccrud_RS02165 7679e70850ec03a6e3082101131616e7 361 Gene3D G3DSA:3.40.50.1000 178 323 7.1E-45 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS02165 7679e70850ec03a6e3082101131616e7 361 Pfam PF12710 haloacid dehalogenase-like hydrolase 106 292 1.1E-29 T 14-09-2016 ccrud_RS02165 7679e70850ec03a6e3082101131616e7 361 SUPERFAMILY SSF56784 105 325 8.0E-30 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS07390 1c5b760eb09b3900fe5774e378e694d7 303 Gene3D G3DSA:2.120.10.30 107 298 5.1E-11 T 14-09-2016 IPR011042 Six-bladed beta-propeller, TolB-like ccrud_RS07390 1c5b760eb09b3900fe5774e378e694d7 303 SUPERFAMILY SSF63825 75 298 3.14E-14 T 14-09-2016 ccrud_RS11880 f234d1a03f8e25fa1d508de309959842 293 SUPERFAMILY SSF81345 2 264 5.1E-30 T 14-09-2016 IPR029022 ABC transporter, BtuC-like ccrud_RS11880 f234d1a03f8e25fa1d508de309959842 293 PANTHER PTHR30477:SF0 7 282 6.3E-42 T 14-09-2016 ccrud_RS11880 f234d1a03f8e25fa1d508de309959842 293 PANTHER PTHR30477 7 282 6.3E-42 T 14-09-2016 ccrud_RS11880 f234d1a03f8e25fa1d508de309959842 293 Pfam PF00950 ABC 3 transport family 16 265 5.4E-41 T 14-09-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 ccrud_RS05660 1f348af21359839fb3a46277892edaff 71 PANTHER PTHR33885 1 66 8.8E-12 T 14-09-2016 ccrud_RS05660 1f348af21359839fb3a46277892edaff 71 Pfam PF04024 PspC domain 8 66 3.7E-17 T 14-09-2016 IPR007168 Phage shock protein, PspC, N-terminal ccrud_RS04980 906292e0175d4793e92673df612dd92c 367 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 47 329 2.4E-23 T 14-09-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 ccrud_RS04980 906292e0175d4793e92673df612dd92c 367 PANTHER PTHR33376 1 358 4.4E-28 T 14-09-2016 ccrud_RS05145 a54d26a5af8b0cb258b8cdb3dcd45280 293 Pfam PF01551 Peptidase family M23 136 243 5.0E-14 T 14-09-2016 IPR016047 Peptidase M23 ccrud_RS05145 a54d26a5af8b0cb258b8cdb3dcd45280 293 SUPERFAMILY SSF51261 180 242 5.75E-18 T 14-09-2016 IPR011055 Duplicated hybrid motif ccrud_RS05145 a54d26a5af8b0cb258b8cdb3dcd45280 293 SUPERFAMILY SSF51261 135 150 5.75E-18 T 14-09-2016 IPR011055 Duplicated hybrid motif ccrud_RS05145 a54d26a5af8b0cb258b8cdb3dcd45280 293 PANTHER PTHR21666 184 244 7.1E-13 T 14-09-2016 ccrud_RS05145 a54d26a5af8b0cb258b8cdb3dcd45280 293 PANTHER PTHR21666 136 155 7.1E-13 T 14-09-2016 ccrud_RS05145 a54d26a5af8b0cb258b8cdb3dcd45280 293 Gene3D G3DSA:2.70.70.10 72 244 1.8E-23 T 14-09-2016 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 Pfam PF01266 FAD dependent oxidoreductase 2 353 7.5E-39 T 14-09-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 Gene3D G3DSA:3.30.9.10 59 145 5.0E-40 T 14-09-2016 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 Gene3D G3DSA:3.30.9.10 211 316 5.0E-40 T 14-09-2016 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 SUPERFAMILY SSF54373 213 308 3.92E-8 T 14-09-2016 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 SUPERFAMILY SSF51905 317 369 2.07E-31 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 SUPERFAMILY SSF51905 1 215 2.07E-31 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 PANTHER PTHR10961 3 368 3.5E-69 T 14-09-2016 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 Gene3D G3DSA:3.50.50.60 146 207 2.2E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 Gene3D G3DSA:3.50.50.60 320 371 2.2E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS07640 0ecb212af2d2c41602e6e637aeee1e51 380 Gene3D G3DSA:3.50.50.60 1 56 2.2E-36 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS12875 9086029367eb93aac9948ad25e75eff6 438 Gene3D G3DSA:3.90.1300.10 9 416 6.9E-92 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS12875 9086029367eb93aac9948ad25e75eff6 438 Pfam PF01425 Amidase 271 408 5.2E-5 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS12875 9086029367eb93aac9948ad25e75eff6 438 Pfam PF01425 Amidase 54 226 6.0E-47 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS12875 9086029367eb93aac9948ad25e75eff6 438 PANTHER PTHR11895 5 425 2.3E-76 T 14-09-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS12875 9086029367eb93aac9948ad25e75eff6 438 SUPERFAMILY SSF75304 7 419 3.4E-86 T 14-09-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 ccrud_RS12840 42cbd84b8a202ded7b017234addf0f78 419 PANTHER PTHR41771:SF1 97 414 1.1E-47 T 14-09-2016 ccrud_RS12840 42cbd84b8a202ded7b017234addf0f78 419 PANTHER PTHR41771 97 414 1.1E-47 T 14-09-2016 ccrud_RS12840 42cbd84b8a202ded7b017234addf0f78 419 Pfam PF07907 YibE/F-like protein 159 398 1.8E-64 T 14-09-2016 IPR012507 YibE/F-like ccrud_RS12715 5eda16d6910c3047ce4702296b9f5b79 394 PANTHER PTHR23534 1 385 2.0E-50 T 14-09-2016 ccrud_RS12715 5eda16d6910c3047ce4702296b9f5b79 394 SUPERFAMILY SSF103473 9 386 4.58E-38 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS12715 5eda16d6910c3047ce4702296b9f5b79 394 Gene3D G3DSA:1.20.1250.20 219 386 9.8E-16 T 14-09-2016 ccrud_RS12715 5eda16d6910c3047ce4702296b9f5b79 394 Gene3D G3DSA:1.20.1250.20 11 199 1.8E-9 T 14-09-2016 ccrud_RS12715 5eda16d6910c3047ce4702296b9f5b79 394 Pfam PF07690 Major Facilitator Superfamily 17 213 5.4E-10 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS12715 5eda16d6910c3047ce4702296b9f5b79 394 Pfam PF07690 Major Facilitator Superfamily 222 384 2.2E-13 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS03640 7d4bd7d30c6927527d6378106d89e620 335 SUPERFAMILY SSF53697 63 332 2.3E-43 T 14-09-2016 ccrud_RS09065 8b00e34e0848c6e6e057e3a05fa336e7 245 Gene3D G3DSA:3.40.430.10 2 236 3.6E-27 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS09065 8b00e34e0848c6e6e057e3a05fa336e7 245 Pfam PF01872 RibD C-terminal domain 4 230 8.2E-16 T 14-09-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 ccrud_RS09065 8b00e34e0848c6e6e057e3a05fa336e7 245 SUPERFAMILY SSF53597 1 236 1.08E-32 T 14-09-2016 IPR024072 Dihydrofolate reductase-like domain ccrud_RS13540 6cd523bc5b1c2b898323b7abc3d2a69c 104 SUPERFAMILY SSF54909 1 99 8.26E-24 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS13540 6cd523bc5b1c2b898323b7abc3d2a69c 104 PANTHER PTHR34474 1 100 3.0E-18 T 14-09-2016 ccrud_RS13540 6cd523bc5b1c2b898323b7abc3d2a69c 104 Gene3D G3DSA:3.30.70.900 1 99 1.1E-30 T 14-09-2016 ccrud_RS13540 6cd523bc5b1c2b898323b7abc3d2a69c 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 3 76 4.5E-16 T 14-09-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain ccrud_RS08370 d198006436059b937e56a94581b43b83 177 Gene3D G3DSA:3.20.80.10 5 168 3.6E-5 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain ccrud_RS08370 d198006436059b937e56a94581b43b83 177 SUPERFAMILY SSF55136 4 168 6.8E-12 T 14-09-2016 IPR011256 Regulatory factor, effector binding domain ccrud_RS00690 570d5867e263f0a1ee1b7a92a9f95250 355 Gene3D G3DSA:1.25.40.20 13 141 1.9E-17 T 14-09-2016 IPR020683 Ankyrin repeat-containing domain ccrud_RS00690 570d5867e263f0a1ee1b7a92a9f95250 355 PANTHER PTHR24198 7 145 3.3E-13 T 14-09-2016 ccrud_RS00690 570d5867e263f0a1ee1b7a92a9f95250 355 SUPERFAMILY SSF48403 13 141 2.07E-16 T 14-09-2016 IPR020683 Ankyrin repeat-containing domain ccrud_RS03610 ad6a1ac7dfb466acfee91758008d9c77 289 PANTHER PTHR22916:SF26 1 143 1.4E-40 T 14-09-2016 ccrud_RS03610 ad6a1ac7dfb466acfee91758008d9c77 289 PANTHER PTHR22916 167 287 1.4E-40 T 14-09-2016 ccrud_RS03610 ad6a1ac7dfb466acfee91758008d9c77 289 Pfam PF00535 Glycosyl transferase family 2 1 190 2.8E-13 T 14-09-2016 IPR001173 Glycosyltransferase 2-like ccrud_RS03610 ad6a1ac7dfb466acfee91758008d9c77 289 PANTHER PTHR22916 1 143 1.4E-40 T 14-09-2016 ccrud_RS03610 ad6a1ac7dfb466acfee91758008d9c77 289 SUPERFAMILY SSF53448 1 231 5.63E-39 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS03610 ad6a1ac7dfb466acfee91758008d9c77 289 PANTHER PTHR22916:SF26 167 287 1.4E-40 T 14-09-2016 ccrud_RS03610 ad6a1ac7dfb466acfee91758008d9c77 289 Gene3D G3DSA:3.90.550.10 1 255 7.2E-36 T 14-09-2016 IPR029044 Nucleotide-diphospho-sugar transferases ccrud_RS07090 a9cc5cad9cc85e217e337edfc1d9c937 234 SUPERFAMILY SSF56784 20 209 6.57E-16 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS07090 a9cc5cad9cc85e217e337edfc1d9c937 234 Gene3D G3DSA:3.40.50.1000 20 32 6.2E-11 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS07090 a9cc5cad9cc85e217e337edfc1d9c937 234 Gene3D G3DSA:3.40.50.1000 108 209 6.2E-11 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS06555 22a6dc64655200dc13076615e86a9930 200 SUPERFAMILY SSF52540 1 194 3.27E-40 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06555 22a6dc64655200dc13076615e86a9930 200 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 198 27.899 T 14-09-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 ccrud_RS06555 22a6dc64655200dc13076615e86a9930 200 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 4 187 3.4E-49 T 14-09-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 ccrud_RS06555 22a6dc64655200dc13076615e86a9930 200 Pfam PF01121 Dephospho-CoA kinase 4 182 7.9E-62 T 14-09-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 ccrud_RS06555 22a6dc64655200dc13076615e86a9930 200 PANTHER PTHR10695 1 199 1.1E-74 T 14-09-2016 ccrud_RS06555 22a6dc64655200dc13076615e86a9930 200 Gene3D G3DSA:3.40.50.300 1 197 1.2E-71 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08695 63451f2181b932d4a1a433d3bf5ba32c 482 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 12 467 40.805 T 14-09-2016 IPR003846 Uncharacterised protein family UPF0061 ccrud_RS08695 63451f2181b932d4a1a433d3bf5ba32c 482 PANTHER PTHR32057 36 481 6.8E-118 T 14-09-2016 ccrud_RS08695 63451f2181b932d4a1a433d3bf5ba32c 482 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 18 376 8.1E-93 T 14-09-2016 IPR003846 Uncharacterised protein family UPF0061 ccrud_RS07845 513a21289b64b8a5fd562972396a8ac9 365 Pfam PF01761 3-dehydroquinate synthase 71 330 1.7E-94 T 14-09-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS07845 513a21289b64b8a5fd562972396a8ac9 365 PIRSF PIRSF001455 11 364 4.6E-96 T 14-09-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS07845 513a21289b64b8a5fd562972396a8ac9 365 PANTHER PTHR21090 3 362 5.3E-128 T 14-09-2016 ccrud_RS07845 513a21289b64b8a5fd562972396a8ac9 365 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 18 357 1.1E-116 T 14-09-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS07845 513a21289b64b8a5fd562972396a8ac9 365 Gene3D G3DSA:3.40.50.1970 13 176 3.8E-54 T 14-09-2016 ccrud_RS07845 513a21289b64b8a5fd562972396a8ac9 365 Gene3D G3DSA:1.20.1090.10 177 361 1.5E-58 T 14-09-2016 ccrud_RS07845 513a21289b64b8a5fd562972396a8ac9 365 SUPERFAMILY SSF56796 12 361 8.5E-102 T 14-09-2016 ccrud_RS07845 513a21289b64b8a5fd562972396a8ac9 365 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 8 362 36.908 T 14-09-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 ccrud_RS02020 cced5b5288bdb71fa4b8865e16758a36 325 Pfam PF06224 Winged helix DNA-binding domain 38 301 2.5E-37 T 14-09-2016 IPR009351 Protein of unknown function DUF1006 ccrud_RS02020 cced5b5288bdb71fa4b8865e16758a36 325 PANTHER PTHR38479:SF1 39 321 2.5E-27 T 14-09-2016 ccrud_RS02020 cced5b5288bdb71fa4b8865e16758a36 325 PANTHER PTHR38479 39 321 2.5E-27 T 14-09-2016 ccrud_RS03600 f440fc994708bf368cd2c07789126923 220 SUPERFAMILY SSF56801 2 218 1.44E-6 T 14-09-2016 ccrud_RS03600 f440fc994708bf368cd2c07789126923 220 TIGRFAM TIGR03089 TIGR03089: TIGR03089 family protein 3 217 6.5E-69 T 14-09-2016 IPR017523 Conserved hypothetical protein CHP03089 ccrud_RS01575 cd5cace42de53d11063323170d1c169b 99 TIGRFAM TIGR03816 tadE_like_DECH: helicase/secretion neighborhood TadE-like protein 2 97 1.9E-20 T 14-09-2016 IPR021202 Helicase/secretion neighbourhood TadE-like protein ccrud_RS13355 7fff1d4545949d5fecfa90f19eb9836d 505 TIGRFAM TIGR03491 TIGR03491: putative RecB family nuclease, TM0106 family 78 491 6.1E-34 T 14-09-2016 IPR019993 RecB family nuclease, TM0106, putative ccrud_RS13355 7fff1d4545949d5fecfa90f19eb9836d 505 Pfam PF13482 RNase_H superfamily 410 491 1.9E-7 T 14-09-2016 IPR012337 Ribonuclease H-like domain GO:0003676 ccrud_RS10905 7d5122696ee370c4de6001899d9a9000 294 PANTHER PTHR30465:SF10 37 287 1.1E-74 T 14-09-2016 ccrud_RS10905 7d5122696ee370c4de6001899d9a9000 294 SUPERFAMILY SSF161098 93 288 8.5E-30 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10905 7d5122696ee370c4de6001899d9a9000 294 Gene3D G3DSA:1.10.3720.10 92 292 5.2E-28 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS10905 7d5122696ee370c4de6001899d9a9000 294 PANTHER PTHR30465 37 287 1.1E-74 T 14-09-2016 ccrud_RS10905 7d5122696ee370c4de6001899d9a9000 294 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 292 2.3E-26 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS06740 76e1c28b12030de8f7371326d6019a9d 59 Gene3D G3DSA:2.20.25.10 10 55 1.4E-19 T 14-09-2016 ccrud_RS06740 76e1c28b12030de8f7371326d6019a9d 59 SUPERFAMILY SSF158997 1 56 6.02E-19 T 14-09-2016 ccrud_RS06740 76e1c28b12030de8f7371326d6019a9d 59 Pfam PF03966 Trm112p-like protein 4 43 4.9E-8 T 14-09-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 ccrud_RS06740 76e1c28b12030de8f7371326d6019a9d 59 PANTHER PTHR33505 1 52 8.7E-20 T 14-09-2016 ccrud_RS05860 40a3073cb943cd39256d5f6a4fc17571 158 Pfam PF10739 Protein of unknown function (DUF2550) 9 133 1.9E-39 T 14-09-2016 IPR019675 Protein of unknown function DUF2550 ccrud_RS12240 0bc2704042470df84ee097b2733bcf41 194 Gene3D G3DSA:1.10.357.10 1 188 7.7E-24 T 14-09-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 ccrud_RS12240 0bc2704042470df84ee097b2733bcf41 194 PANTHER PTHR30055 1 150 4.3E-12 T 14-09-2016 ccrud_RS12240 0bc2704042470df84ee097b2733bcf41 194 SUPERFAMILY SSF48498 78 187 1.11E-12 T 14-09-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal ccrud_RS12240 0bc2704042470df84ee097b2733bcf41 194 Pfam PF00440 Bacterial regulatory proteins, tetR family 13 57 6.8E-10 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS12240 0bc2704042470df84ee097b2733bcf41 194 SUPERFAMILY SSF46689 1 66 4.89E-14 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS12240 0bc2704042470df84ee097b2733bcf41 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 7.2E-6 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS12240 0bc2704042470df84ee097b2733bcf41 194 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 7.2E-6 T 14-09-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 ccrud_RS05610 a520ad614c8aa8e4d83acb10836a3bd1 391 PANTHER PTHR30337 15 364 1.9E-35 T 14-09-2016 ccrud_RS05610 a520ad614c8aa8e4d83acb10836a3bd1 391 SUPERFAMILY SSF56300 16 317 9.99E-40 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS05610 a520ad614c8aa8e4d83acb10836a3bd1 391 PIRSF PIRSF033093 14 391 1.3E-158 T 14-09-2016 IPR014577 Uncharacterised conserved protein UCP033093, metallophosphoesterase-type ccrud_RS05610 a520ad614c8aa8e4d83acb10836a3bd1 391 Pfam PF00149 Calcineurin-like phosphoesterase 16 112 2.4E-10 T 14-09-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 ccrud_RS05610 a520ad614c8aa8e4d83acb10836a3bd1 391 Gene3D G3DSA:3.60.21.10 14 264 8.5E-39 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS05610 a520ad614c8aa8e4d83acb10836a3bd1 391 PANTHER PTHR30337:SF5 15 364 1.9E-35 T 14-09-2016 ccrud_RS03625 26b0ee08a5533d07dcb95c64ce9f17b5 152 Pfam PF06262 Zinicin-like metallopeptidase 52 146 2.7E-5 T 14-09-2016 IPR010428 Zinicin-like metallopeptidase ccrud_RS03625 26b0ee08a5533d07dcb95c64ce9f17b5 152 SUPERFAMILY SSF55486 26 147 4.76E-18 T 14-09-2016 ccrud_RS13060 02c7a2490a12415d4118a96900485d09 121 Pfam PF11255 Protein of unknown function (DUF3054) 8 115 5.7E-26 T 14-09-2016 IPR021414 Protein of unknown function DUF3054 ccrud_RS12100 1e127be812c495aea0c31c60038c5ad0 317 Pfam PF04480 Protein of unknown function (DUF559) 197 295 4.3E-5 T 14-09-2016 IPR007569 Domain of unknown function DUF559 ccrud_RS08945 33a3b0c2803e3c10b52139aba106cee9 111 SUPERFAMILY SSF51182 17 95 7.92E-15 T 14-09-2016 IPR011051 RmlC-like cupin domain ccrud_RS08945 33a3b0c2803e3c10b52139aba106cee9 111 Gene3D G3DSA:2.60.120.10 3 109 1.6E-22 T 14-09-2016 IPR014710 RmlC-like jelly roll fold ccrud_RS08945 33a3b0c2803e3c10b52139aba106cee9 111 Pfam PF07883 Cupin domain 36 95 5.9E-7 T 14-09-2016 IPR013096 Cupin 2, conserved barrel ccrud_RS04725 ba138cbd9a55b2f3331fdbde5af10ebc 449 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 5 434 1.0E-46 T 14-09-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit ccrud_RS04725 ba138cbd9a55b2f3331fdbde5af10ebc 449 PANTHER PTHR33362 6 446 2.8E-22 T 14-09-2016 ccrud_RS07680 c70beaf042374df684a32f6885581292 327 Pfam PF02650 WhiA C-terminal HTH domain 221 303 2.3E-20 T 14-09-2016 IPR023054 Sporulation regulator WhiA, C-terminal ccrud_RS07680 c70beaf042374df684a32f6885581292 327 Pfam PF10298 WhiA N-terminal LAGLIDADG-like domain 21 104 3.1E-20 T 14-09-2016 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain ccrud_RS07680 c70beaf042374df684a32f6885581292 327 Pfam PF14527 WhiA LAGLIDADG-like domain 127 218 1.0E-21 T 14-09-2016 ccrud_RS07680 c70beaf042374df684a32f6885581292 327 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 4 304 3.2E-109 T 14-09-2016 ccrud_RS07680 c70beaf042374df684a32f6885581292 327 Hamap MF_01420 Putative sporulation transcription regulator WhiA [whiA]. 3 306 28.287 T 14-09-2016 IPR003802 Sporulation regulator WhiA GO:0043937 ccrud_RS07680 c70beaf042374df684a32f6885581292 327 PANTHER PTHR37307 2 322 2.0E-99 T 14-09-2016 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 Pfam PF13244 Domain of unknown function (DUF4040) 610 673 3.8E-17 T 14-09-2016 IPR025383 Domain of unknown function DUF4040 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 789 904 2.6E-27 T 14-09-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 Pfam PF00361 Proton-conducting membrane transporter 131 408 8.3E-63 T 14-09-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 70 118 7.5E-8 T 14-09-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 PANTHER PTHR22773:SF46 1 575 7.4E-131 T 14-09-2016 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 PANTHER PTHR22773 1 575 7.4E-131 T 14-09-2016 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 108 128 9.2E-32 T 14-09-2016 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 241 267 9.2E-32 T 14-09-2016 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 418 437 9.2E-32 T 14-09-2016 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 219 240 9.2E-32 T 14-09-2016 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 80 105 9.2E-32 T 14-09-2016 ccrud_RS01400 1f8d558a9ed822fb506698710db143b0 964 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 309 321 9.2E-32 T 14-09-2016 ccrud_RS11635 5dc8d221b5594b3710a732450bc73be2 314 PANTHER PTHR11825 29 293 1.1E-53 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS11635 5dc8d221b5594b3710a732450bc73be2 314 SUPERFAMILY SSF56752 29 149 2.88E-54 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS11635 5dc8d221b5594b3710a732450bc73be2 314 SUPERFAMILY SSF56752 176 308 2.88E-54 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS11635 5dc8d221b5594b3710a732450bc73be2 314 Gene3D G3DSA:3.30.470.10 30 122 2.2E-16 T 14-09-2016 ccrud_RS11635 5dc8d221b5594b3710a732450bc73be2 314 Pfam PF01063 Amino-transferase class IV 47 290 4.0E-44 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS11635 5dc8d221b5594b3710a732450bc73be2 314 PANTHER PTHR11825:SF32 29 293 1.1E-53 T 14-09-2016 ccrud_RS11635 5dc8d221b5594b3710a732450bc73be2 314 Gene3D G3DSA:3.20.10.10 176 305 2.4E-34 T 14-09-2016 ccrud_RS08205 e044a33f209f889159908d06c8b57151 274 Pfam PF12502 Protein of unknown function (DUF3710) 66 239 1.6E-49 T 14-09-2016 IPR022183 Protein of unknown function DUF3710 ccrud_RS10355 cddba79640a9586b67989bd902e36220 196 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 8 158 1.9E-7 T 14-09-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type ccrud_RS10355 cddba79640a9586b67989bd902e36220 196 Gene3D G3DSA:3.60.21.10 3 182 6.3E-37 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS10355 cddba79640a9586b67989bd902e36220 196 SUPERFAMILY SSF56300 5 166 5.45E-18 T 14-09-2016 IPR029052 Metallo-dependent phosphatase-like ccrud_RS02340 5d53b92dc2384dd68b4766c8484939b8 93 Pfam PF14012 Protein of unknown function (DUF4229) 12 79 1.1E-26 T 14-09-2016 IPR025323 Protein of unknown function DUF4229 ccrud_RS00880 c43d73b36ce9cb56e9cb57b5af6c519f 149 Pfam PF13610 DDE domain 17 135 2.2E-31 T 14-09-2016 IPR032874 DDE domain ccrud_RS10435 49a0a240e428af6e661429d6e53d4194 554 Pfam PF03772 Competence protein 186 454 1.6E-41 T 14-09-2016 IPR004477 ComEC/Rec2-related protein ccrud_RS10435 49a0a240e428af6e661429d6e53d4194 554 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 208 385 8.2E-21 T 14-09-2016 IPR004477 ComEC/Rec2-related protein ccrud_RS10435 49a0a240e428af6e661429d6e53d4194 554 PANTHER PTHR30619 159 475 5.8E-41 T 14-09-2016 ccrud_RS06430 8364a6a2e715b9daed23bc5f16021876 149 Pfam PF12728 Helix-turn-helix domain 79 126 3.3E-11 T 14-09-2016 ccrud_RS06430 8364a6a2e715b9daed23bc5f16021876 149 Gene3D G3DSA:1.10.10.10 79 132 9.9E-4 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS06430 8364a6a2e715b9daed23bc5f16021876 149 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 79 126 9.1E-17 T 14-09-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 ccrud_RS04840 6fe29b521e67f7b0269e28260d972d2d 273 PIRSF PIRSF009160 1 273 1.6E-96 T 14-09-2016 IPR010539 Protein of unknown function UCP009160 ccrud_RS04840 6fe29b521e67f7b0269e28260d972d2d 273 PANTHER PTHR41282 1 273 8.2E-61 T 14-09-2016 ccrud_RS04840 6fe29b521e67f7b0269e28260d972d2d 273 Pfam PF12811 Bax inhibitor 1 like 5 272 8.3E-84 T 14-09-2016 IPR010539 Protein of unknown function UCP009160 ccrud_RS04840 6fe29b521e67f7b0269e28260d972d2d 273 PANTHER PTHR41282:SF1 1 273 8.2E-61 T 14-09-2016 ccrud_RS00945 c782e00bbe1827cf1a196c9334da1c66 98 Pfam PF08448 PAS fold 1 76 2.5E-6 T 14-09-2016 IPR013656 PAS fold-4 ccrud_RS00945 c782e00bbe1827cf1a196c9334da1c66 98 SUPERFAMILY SSF55785 1 77 1.1E-10 T 14-09-2016 IPR000014 PAS domain ccrud_RS00945 c782e00bbe1827cf1a196c9334da1c66 98 Gene3D G3DSA:3.30.450.20 1 75 1.4E-8 T 14-09-2016 ccrud_RS06495 a9e9eb2266b16bf117685f7bb73e3c5d 248 Pfam PF01925 Sulfite exporter TauE/SafE 9 236 8.9E-19 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 ccrud_RS13570 c327f9e930cb53b4f7aba5819cb521ac 184 Pfam PF02698 DUF218 domain 41 171 8.8E-9 T 14-09-2016 IPR003848 Domain of unknown function DUF218 ccrud_RS13570 c327f9e930cb53b4f7aba5819cb521ac 184 Gene3D G3DSA:3.40.50.620 33 76 0.001 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS07225 fa3810207a42ac0b5eb5b1fac96d4771 213 Pfam PF00089 Trypsin 38 194 1.2E-7 T 14-09-2016 IPR001254 Serine proteases, trypsin domain GO:0004252|GO:0006508 ccrud_RS07225 fa3810207a42ac0b5eb5b1fac96d4771 213 SUPERFAMILY SSF50494 37 206 4.71E-18 T 14-09-2016 IPR009003 Peptidase S1, PA clan ccrud_RS07225 fa3810207a42ac0b5eb5b1fac96d4771 213 Gene3D G3DSA:2.40.10.10 156 195 7.7E-6 T 14-09-2016 ccrud_RS00170 a1ba8064433362801d616bfbd8c9f80d 451 SMART SM00332 1 232 8.2E-22 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 ccrud_RS00170 a1ba8064433362801d616bfbd8c9f80d 451 SUPERFAMILY SSF81606 3 233 3.66E-60 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 ccrud_RS00170 a1ba8064433362801d616bfbd8c9f80d 451 Pfam PF13672 Protein phosphatase 2C 25 215 7.6E-10 T 14-09-2016 ccrud_RS00170 a1ba8064433362801d616bfbd8c9f80d 451 Gene3D G3DSA:3.60.40.10 2 234 2.0E-62 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 ccrud_RS00170 a1ba8064433362801d616bfbd8c9f80d 451 PANTHER PTHR13832 1 254 6.4E-54 T 14-09-2016 IPR015655 Protein phosphatase 2C family GO:0004722|GO:0006470 KEGG: 04660+3.1.3.16 ccrud_RS00170 a1ba8064433362801d616bfbd8c9f80d 451 PANTHER PTHR13832:SF226 1 254 6.4E-54 T 14-09-2016 ccrud_RS00170 a1ba8064433362801d616bfbd8c9f80d 451 SMART SM00331 10 234 5.2E-35 T 14-09-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 ccrud_RS08610 4b61db015d169e4f31b66ee4299a44f8 435 PANTHER PTHR11206:SF94 16 433 6.2E-101 T 14-09-2016 ccrud_RS08610 4b61db015d169e4f31b66ee4299a44f8 435 PANTHER PTHR11206 16 433 6.2E-101 T 14-09-2016 ccrud_RS08610 4b61db015d169e4f31b66ee4299a44f8 435 PIRSF PIRSF006603 9 435 6.3E-50 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS08610 4b61db015d169e4f31b66ee4299a44f8 435 TIGRFAM TIGR00797 matE: MATE efflux family protein 24 410 7.8E-81 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS08610 4b61db015d169e4f31b66ee4299a44f8 435 Pfam PF01554 MatE 239 395 7.8E-16 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS08610 4b61db015d169e4f31b66ee4299a44f8 435 Pfam PF01554 MatE 24 180 4.9E-24 T 14-09-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 ccrud_RS13010 8409f9956025504cd4579d35152db693 369 Pfam PF00534 Glycosyl transferases group 1 187 345 1.4E-27 T 14-09-2016 IPR001296 Glycosyl transferase, family 1 ccrud_RS13010 8409f9956025504cd4579d35152db693 369 SUPERFAMILY SSF53756 1 362 3.93E-65 T 14-09-2016 ccrud_RS13010 8409f9956025504cd4579d35152db693 369 Pfam PF13439 Glycosyltransferase Family 4 17 180 2.9E-15 T 14-09-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain ccrud_RS13010 8409f9956025504cd4579d35152db693 369 PANTHER PTHR12526 1 368 7.9E-58 T 14-09-2016 ccrud_RS13010 8409f9956025504cd4579d35152db693 369 Gene3D G3DSA:3.40.50.2000 192 345 1.3E-26 T 14-09-2016 ccrud_RS01340 9ab66a2b7f7459e19e3cf381b5c298fa 231 PANTHER PTHR40761 1 220 4.3E-33 T 14-09-2016 ccrud_RS01340 9ab66a2b7f7459e19e3cf381b5c298fa 231 PANTHER PTHR40761:SF1 1 220 4.3E-33 T 14-09-2016 ccrud_RS08265 8302c266432aec60cc8a34c3d2a4cc9f 511 Gene3D G3DSA:3.40.50.150 148 303 1.4E-23 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS08265 8302c266432aec60cc8a34c3d2a4cc9f 511 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 225 231 - T 14-09-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 ccrud_RS08265 8302c266432aec60cc8a34c3d2a4cc9f 511 SUPERFAMILY SSF53335 126 307 1.52E-25 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS08265 8302c266432aec60cc8a34c3d2a4cc9f 511 Pfam PF05175 Methyltransferase small domain 144 236 1.3E-11 T 14-09-2016 IPR007848 Methyltransferase small domain GO:0008168 ccrud_RS08265 8302c266432aec60cc8a34c3d2a4cc9f 511 PANTHER PTHR18895:SF64 160 343 1.5E-18 T 14-09-2016 ccrud_RS08265 8302c266432aec60cc8a34c3d2a4cc9f 511 PANTHER PTHR18895 160 343 1.5E-18 T 14-09-2016 ccrud_RS04785 07c520a85ffe4be8983c654798b0bb82 64 Pfam PF14013 MT0933-like antitoxin protein 9 58 4.4E-11 T 14-09-2016 IPR028037 Antitoxin Rv0909/MT0933 ccrud_RS07515 889ce09370e5f4e784bdc22a45f52dc5 221 Pfam PF13460 NAD(P)H-binding 11 198 1.3E-29 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07515 889ce09370e5f4e784bdc22a45f52dc5 221 Gene3D G3DSA:3.40.50.720 4 212 1.9E-26 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07515 889ce09370e5f4e784bdc22a45f52dc5 221 SUPERFAMILY SSF51735 3 214 4.87E-22 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS08075 cb1735c494d7cac605ee38793ff86b0a 219 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 69 91 - T 14-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 ccrud_RS08075 cb1735c494d7cac605ee38793ff86b0a 219 Pfam PF01066 CDP-alcohol phosphatidyltransferase 26 91 1.3E-10 T 14-09-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 ccrud_RS05375 a1ee03a54016bda4ee449a2644c8a344 102 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 54 74 7.0E-6 T 14-09-2016 IPR019933 DivIVA domain ccrud_RS06485 ba1d6e9c86d616d5f52ea9cf4a10700d 194 PANTHER PTHR18895 3 189 5.2E-28 T 14-09-2016 ccrud_RS06485 ba1d6e9c86d616d5f52ea9cf4a10700d 194 PIRSF PIRSF004553 3 189 2.8E-46 T 14-09-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 ccrud_RS06485 ba1d6e9c86d616d5f52ea9cf4a10700d 194 PANTHER PTHR18895:SF60 3 189 5.2E-28 T 14-09-2016 ccrud_RS06485 ba1d6e9c86d616d5f52ea9cf4a10700d 194 Gene3D G3DSA:3.40.50.150 2 185 2.4E-46 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS06485 ba1d6e9c86d616d5f52ea9cf4a10700d 194 Pfam PF03602 Conserved hypothetical protein 95 4 178 9.6E-41 T 14-09-2016 ccrud_RS06485 ba1d6e9c86d616d5f52ea9cf4a10700d 194 SUPERFAMILY SSF53335 4 178 1.47E-38 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS03480 e363caf5c8834bc8901667042e657a50 81 Pfam PF13822 Acyl-CoA carboxylase epsilon subunit 15 75 9.8E-19 T 14-09-2016 IPR032716 Acyl-CoA carboxylase epsilon subunit ccrud_RS00790 a77ef9e8868551186d769e78737ee0b9 302 Pfam PF07859 alpha/beta hydrolase fold 127 212 2.4E-6 T 14-09-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 ccrud_RS00790 a77ef9e8868551186d769e78737ee0b9 302 SUPERFAMILY SSF53474 71 254 7.94E-16 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00790 a77ef9e8868551186d769e78737ee0b9 302 Gene3D G3DSA:3.40.50.1820 114 210 8.9E-12 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS05215 46f9c2c4df2661a1877b1bc2c3c12ea7 177 SUPERFAMILY SSF52540 1 149 3.69E-15 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05215 46f9c2c4df2661a1877b1bc2c3c12ea7 177 Pfam PF13238 AAA domain 4 125 4.5E-7 T 14-09-2016 ccrud_RS05215 46f9c2c4df2661a1877b1bc2c3c12ea7 177 Gene3D G3DSA:3.40.50.300 2 127 1.2E-12 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05215 46f9c2c4df2661a1877b1bc2c3c12ea7 177 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 4 17 - T 14-09-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 ccrud_RS03765 a7772d9053b34c7e073ba049bec0a9bf 289 Pfam PF11350 Protein of unknown function (DUF3152) 80 286 6.0E-102 T 14-09-2016 IPR022603 Domain of unknown function DUF3152 ccrud_RS03765 a7772d9053b34c7e073ba049bec0a9bf 289 SUPERFAMILY SSF55486 79 255 1.03E-17 T 14-09-2016 ccrud_RS03835 9ace9e75b4c4ec7cd95758523b021b76 981 PANTHER PTHR39344 1 975 5.2E-291 T 14-09-2016 ccrud_RS03835 9ace9e75b4c4ec7cd95758523b021b76 981 Hamap MF_01600 UPF0182 protein . 14 911 17.441 T 14-09-2016 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 ccrud_RS03835 9ace9e75b4c4ec7cd95758523b021b76 981 Pfam PF03699 Uncharacterised protein family (UPF0182) 21 834 4.1E-277 T 14-09-2016 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 ccrud_RS11570 75ac8217a4c50661b5274bcb038edf94 274 Gene3D G3DSA:3.40.50.1820 27 151 1.8E-19 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11570 75ac8217a4c50661b5274bcb038edf94 274 Gene3D G3DSA:3.40.50.1820 211 271 1.8E-19 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11570 75ac8217a4c50661b5274bcb038edf94 274 Pfam PF12697 Alpha/beta hydrolase family 44 257 1.9E-10 T 14-09-2016 IPR000073 Alpha/beta hydrolase fold-1 ccrud_RS11570 75ac8217a4c50661b5274bcb038edf94 274 SUPERFAMILY SSF53474 17 265 6.69E-22 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 Pfam PF00005 ABC transporter 19 167 1.6E-36 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 SMART SM00382 28 216 1.3E-14 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 SUPERFAMILY SSF55021 243 332 1.72E-5 T 14-09-2016 ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 PANTHER PTHR24220:SF455 5 239 1.3E-121 T 14-09-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 Gene3D G3DSA:3.40.50.300 2 235 2.3E-85 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 Gene3D G3DSA:3.30.70.260 236 332 8.4E-11 T 14-09-2016 ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 SMART SM00930 259 332 2.5E-6 T 14-09-2016 IPR018449 NIL domain ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 Pfam PF09383 NIL domain 262 331 4.0E-5 T 14-09-2016 IPR018449 NIL domain ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 PANTHER PTHR24220 5 239 1.3E-121 T 14-09-2016 ccrud_RS12730 f73f691fc0d2a4f8dfbeabfab58d6cb3 333 SUPERFAMILY SSF52540 4 238 8.22E-80 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02945 42f019c12eba4968ae2c6ee3bf8a4d52 303 TIGRFAM TIGR03931 T7SS_Rv3446c: type VII secretion-associated protein, Rv3446c family 119 302 2.6E-44 T 14-09-2016 IPR023840 Type VII secretion system Rv3446c ccrud_RS01610 df54a7668371883077e19b08b010a135 419 SMART SM00382 56 200 2.7E-4 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS01610 df54a7668371883077e19b08b010a135 419 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 51 233 8.0E-57 T 14-09-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 ccrud_RS01610 df54a7668371883077e19b08b010a135 419 Pfam PF13177 DNA polymerase III, delta subunit 50 197 1.1E-36 T 14-09-2016 ccrud_RS01610 df54a7668371883077e19b08b010a135 419 PANTHER PTHR11669 7 28 1.4E-48 T 14-09-2016 ccrud_RS01610 df54a7668371883077e19b08b010a135 419 PANTHER PTHR11669 56 249 1.4E-48 T 14-09-2016 ccrud_RS01610 df54a7668371883077e19b08b010a135 419 SUPERFAMILY SSF52540 50 237 3.92E-41 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01610 df54a7668371883077e19b08b010a135 419 Gene3D G3DSA:3.40.50.300 49 197 7.0E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS01610 df54a7668371883077e19b08b010a135 419 PANTHER PTHR11669:SF8 7 28 1.4E-48 T 14-09-2016 ccrud_RS01610 df54a7668371883077e19b08b010a135 419 PANTHER PTHR11669:SF8 56 249 1.4E-48 T 14-09-2016 ccrud_RS11875 8548b089c2708b08772637d5e8094dc1 230 Pfam PF00005 ABC transporter 15 146 1.5E-22 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS11875 8548b089c2708b08772637d5e8094dc1 230 SMART SM00382 23 196 7.6E-10 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS11875 8548b089c2708b08772637d5e8094dc1 230 SUPERFAMILY SSF52540 12 209 7.56E-44 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS11875 8548b089c2708b08772637d5e8094dc1 230 PANTHER PTHR24220 15 214 3.3E-48 T 14-09-2016 ccrud_RS11875 8548b089c2708b08772637d5e8094dc1 230 Gene3D G3DSA:3.40.50.300 12 210 1.6E-46 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05230 3abc18911fdefbc137efcb617b897ac7 237 Pfam PF09529 Integral membrane protein (intg_mem_TP0381) 13 220 2.4E-41 T 14-09-2016 IPR011737 Conserved hypothetical protein CHP02206, TP0381 ccrud_RS05230 3abc18911fdefbc137efcb617b897ac7 237 TIGRFAM TIGR02206 intg_mem_TP0381: conserved hypothetical integral membrane protein TIGR02206 9 223 1.2E-64 T 14-09-2016 IPR011737 Conserved hypothetical protein CHP02206, TP0381 ccrud_RS04800 e548e0146755058f39f0605d59f7980c 126 Pfam PF11565 Alpha helical Porin B 28 126 1.6E-36 T 14-09-2016 IPR021114 Porin PorB/PorC ccrud_RS05995 00acaa1f3471885fa7475f0ec0bd9c7b 99 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 20 91 2.1E-20 T 14-09-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 ccrud_RS05995 00acaa1f3471885fa7475f0ec0bd9c7b 99 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 1.3E-29 T 14-09-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 ccrud_RS05995 00acaa1f3471885fa7475f0ec0bd9c7b 99 PANTHER PTHR15004 2 96 2.6E-28 T 14-09-2016 ccrud_RS05995 00acaa1f3471885fa7475f0ec0bd9c7b 99 SUPERFAMILY SSF141000 4 94 5.36E-29 T 14-09-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 ccrud_RS05995 00acaa1f3471885fa7475f0ec0bd9c7b 99 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 3 96 24.785 T 14-09-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 ccrud_RS05995 00acaa1f3471885fa7475f0ec0bd9c7b 99 PANTHER PTHR15004:SF0 2 96 2.6E-28 T 14-09-2016 ccrud_RS03525 678c9b71db702841d75beec9203f5ba2 151 Gene3D G3DSA:3.40.50.620 4 109 1.4E-8 T 14-09-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold ccrud_RS03525 678c9b71db702841d75beec9203f5ba2 151 Pfam PF02698 DUF218 domain 4 132 7.2E-21 T 14-09-2016 IPR003848 Domain of unknown function DUF218 ccrud_RS03525 678c9b71db702841d75beec9203f5ba2 151 PANTHER PTHR30336 4 119 1.1E-14 T 14-09-2016 ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 SUPERFAMILY SSF52096 5 221 2.13E-52 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 SUPERFAMILY SSF52096 242 476 5.41E-48 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 71 85 1.4E-18 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 193 202 1.4E-18 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 171 182 1.4E-18 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 142 159 1.4E-18 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 105 123 1.4E-18 T 14-09-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 PANTHER PTHR22855 10 223 3.4E-53 T 14-09-2016 ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 PANTHER PTHR22855:SF17 10 223 3.4E-53 T 14-09-2016 ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 Gene3D G3DSA:3.90.226.10 242 463 7.8E-35 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 Pfam PF01039 Carboxyl transferase domain 37 426 7.8E-45 T 14-09-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 ccrud_RS04095 640f18f9365883ed6694931c762a083e 480 Gene3D G3DSA:3.90.226.10 6 222 5.4E-45 T 14-09-2016 IPR029045 ClpP/crotonase-like domain ccrud_RS01480 e5c8f84b0cc8ca75468571ed54c28db2 312 PANTHER PTHR20852 182 295 2.3E-41 T 14-09-2016 ccrud_RS01480 e5c8f84b0cc8ca75468571ed54c28db2 312 SUPERFAMILY SSF51556 20 297 8.02E-62 T 14-09-2016 IPR032466 Metal-dependent hydrolase ccrud_RS01480 e5c8f84b0cc8ca75468571ed54c28db2 312 Pfam PF04909 Amidohydrolase 20 297 1.2E-68 T 14-09-2016 IPR006680 Amidohydrolase-related GO:0016787 ccrud_RS01480 e5c8f84b0cc8ca75468571ed54c28db2 312 Gene3D G3DSA:3.20.20.140 20 299 1.6E-61 T 14-09-2016 ccrud_RS01480 e5c8f84b0cc8ca75468571ed54c28db2 312 PANTHER PTHR20852:SF60 182 295 2.3E-41 T 14-09-2016 ccrud_RS06655 23edcb4f4778bc25767e0b1a68326a92 271 Gene3D G3DSA:3.30.1330.30 12 103 1.3E-21 T 14-09-2016 IPR029064 50S ribosomal protein L30e-like ccrud_RS06655 23edcb4f4778bc25767e0b1a68326a92 271 PANTHER PTHR12029 19 262 1.3E-49 T 14-09-2016 ccrud_RS06655 23edcb4f4778bc25767e0b1a68326a92 271 SUPERFAMILY SSF75217 115 267 5.17E-38 T 14-09-2016 IPR029028 Alpha/beta knot methyltransferases ccrud_RS06655 23edcb4f4778bc25767e0b1a68326a92 271 SMART SM00967 35 108 4.5E-9 T 14-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 ccrud_RS06655 23edcb4f4778bc25767e0b1a68326a92 271 Gene3D G3DSA:3.40.1280.10 115 265 5.2E-47 T 14-09-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal ccrud_RS06655 23edcb4f4778bc25767e0b1a68326a92 271 SUPERFAMILY SSF55315 13 103 1.77E-17 T 14-09-2016 IPR029064 50S ribosomal protein L30e-like ccrud_RS06655 23edcb4f4778bc25767e0b1a68326a92 271 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 35 103 7.1E-6 T 14-09-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 ccrud_RS06655 23edcb4f4778bc25767e0b1a68326a92 271 Pfam PF00588 SpoU rRNA Methylase family 122 261 9.5E-35 T 14-09-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 ccrud_RS06145 9c24755032c1a98d3c9ddcaf81b9700b 289 Pfam PF10722 Putative bacterial sensory transduction regulator 164 273 4.1E-6 T 14-09-2016 IPR019660 Putative sensory transduction regulator YbjN ccrud_RS10175 9b75c2bda3296948a188806149478410 363 Pfam PF01636 Phosphotransferase enzyme family 84 267 1.7E-9 T 14-09-2016 IPR002575 Aminoglycoside phosphotransferase ccrud_RS10175 9b75c2bda3296948a188806149478410 363 SUPERFAMILY SSF56112 91 332 1.68E-16 T 14-09-2016 IPR011009 Protein kinase-like domain ccrud_RS10220 f03a4f19d772809be8b5202bfd20b3e5 222 PANTHER PTHR18901 3 214 3.2E-35 T 14-09-2016 ccrud_RS10220 f03a4f19d772809be8b5202bfd20b3e5 222 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 191 1.9E-23 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS10220 f03a4f19d772809be8b5202bfd20b3e5 222 Gene3D G3DSA:3.40.50.1000 90 220 1.9E-35 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS10220 f03a4f19d772809be8b5202bfd20b3e5 222 Gene3D G3DSA:3.40.50.1000 2 21 1.9E-35 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS10220 f03a4f19d772809be8b5202bfd20b3e5 222 SUPERFAMILY SSF56784 1 220 2.76E-41 T 14-09-2016 IPR023214 HAD-like domain ccrud_RS04745 181bb8b79504dcdeb8273ce524fc8c63 145 SMART SM00894 109 145 1.1E-20 T 14-09-2016 IPR008613 Excalibur calcium-binding domain ccrud_RS04745 181bb8b79504dcdeb8273ce524fc8c63 145 Pfam PF05901 Excalibur calcium-binding domain 110 145 2.1E-14 T 14-09-2016 IPR008613 Excalibur calcium-binding domain ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 57 288 1.7E-59 T 14-09-2016 ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PANTHER PTHR24322 197 229 3.5E-57 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PANTHER PTHR24322 52 181 3.5E-57 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 253 273 4.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 197 216 4.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 49 66 4.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 218 235 4.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 187 4.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 125 136 4.4E-35 T 14-09-2016 IPR002347 Short-chain dehydrogenase/reductase SDR ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 184 212 - T 14-09-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PANTHER PTHR24322:SF564 197 229 3.5E-57 T 14-09-2016 ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 PANTHER PTHR24322:SF564 52 181 3.5E-57 T 14-09-2016 ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 Gene3D G3DSA:3.40.50.720 43 288 3.8E-81 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS09340 fe66f7de60e9081aa9ab5a6da92acc11 292 SUPERFAMILY SSF51735 46 289 8.0E-79 T 14-09-2016 IPR016040 NAD(P)-binding domain ccrud_RS07595 93bf7d9c90d8ce7c6a36cf542255e792 265 Pfam PF12698 ABC-2 family transporter protein 74 254 1.1E-14 T 14-09-2016 ccrud_RS11035 bd38c040cc6cf88dd55363c6323d93d0 713 Pfam PF05425 Copper resistance protein D 269 364 1.4E-19 T 14-09-2016 IPR008457 Copper resistance protein D GO:0016021 ccrud_RS11035 bd38c040cc6cf88dd55363c6323d93d0 713 Pfam PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) 418 661 7.7E-70 T 14-09-2016 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related ccrud_RS11035 bd38c040cc6cf88dd55363c6323d93d0 713 PANTHER PTHR34820 128 414 2.6E-13 T 14-09-2016 ccrud_RS03725 82e3928d8a274a5fe4d87eed0b7ac070 213 Gene3D G3DSA:3.90.1680.10 1 211 5.4E-58 T 14-09-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS03725 82e3928d8a274a5fe4d87eed0b7ac070 213 PANTHER PTHR13604 2 207 1.2E-54 T 14-09-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS03725 82e3928d8a274a5fe4d87eed0b7ac070 213 Pfam PF02586 SOS response associated peptidase (SRAP) 1 204 4.5E-51 T 14-09-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS03725 82e3928d8a274a5fe4d87eed0b7ac070 213 SUPERFAMILY SSF143081 2 208 8.76E-57 T 14-09-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS12575 a7a70517b318432b7a11f842ef5f2b75 264 PANTHER PTHR23088 1 264 6.4E-72 T 14-09-2016 ccrud_RS12575 a7a70517b318432b7a11f842ef5f2b75 264 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 147 167 - T 14-09-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site ccrud_RS12575 a7a70517b318432b7a11f842ef5f2b75 264 Gene3D G3DSA:3.60.110.10 1 264 1.5E-68 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 ccrud_RS12575 a7a70517b318432b7a11f842ef5f2b75 264 Pfam PF00795 Carbon-nitrogen hydrolase 2 258 1.6E-43 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 ccrud_RS12575 a7a70517b318432b7a11f842ef5f2b75 264 SUPERFAMILY SSF56317 1 264 7.06E-61 T 14-09-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 ccrud_RS12575 a7a70517b318432b7a11f842ef5f2b75 264 PANTHER PTHR23088:SF27 1 264 6.4E-72 T 14-09-2016 ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 99 339 3.1E-10 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 PANTHER PTHR10314 58 340 5.6E-118 T 14-09-2016 ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 PANTHER PTHR10314 26 37 5.6E-118 T 14-09-2016 ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 PANTHER PTHR10314 374 480 5.6E-118 T 14-09-2016 ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 PANTHER PTHR10314:SF1 58 340 5.6E-118 T 14-09-2016 ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 PANTHER PTHR10314:SF1 374 480 5.6E-118 T 14-09-2016 ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 PANTHER PTHR10314:SF1 26 37 5.6E-118 T 14-09-2016 ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 108 122 - T 14-09-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 TIGRFAM TIGR00260 thrC: threonine synthase 72 440 1.6E-67 T 14-09-2016 IPR004450 Threonine synthase-like ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 SUPERFAMILY SSF53686 2 473 9.6E-144 T 14-09-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 Gene3D G3DSA:3.90.1380.10 2 88 1.4E-27 T 14-09-2016 IPR029144 Threonine synthase, N-terminal ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 Pfam PF14821 Threonine synthase N terminus 3 84 6.3E-25 T 14-09-2016 IPR029144 Threonine synthase, N-terminal ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 Gene3D G3DSA:3.40.50.1100 210 448 3.7E-87 T 14-09-2016 ccrud_RS09785 9b01ad9b5e8f296730dea0b5570da208 481 Gene3D G3DSA:3.40.50.1100 117 209 1.2E-6 T 14-09-2016 ccrud_RS03020 3517d8a1c140d064f5ef6782a1884310 225 Pfam PF00814 Glycoprotease family 34 147 2.3E-27 T 14-09-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 ccrud_RS03020 3517d8a1c140d064f5ef6782a1884310 225 SUPERFAMILY SSF53067 2 103 1.55E-23 T 14-09-2016 ccrud_RS03020 3517d8a1c140d064f5ef6782a1884310 225 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 3 203 2.3E-49 T 14-09-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 ccrud_RS03020 3517d8a1c140d064f5ef6782a1884310 225 PANTHER PTHR11735:SF11 1 137 1.6E-31 T 14-09-2016 ccrud_RS03020 3517d8a1c140d064f5ef6782a1884310 225 Gene3D G3DSA:3.30.420.40 2 132 1.5E-37 T 14-09-2016 ccrud_RS03020 3517d8a1c140d064f5ef6782a1884310 225 PANTHER PTHR11735 1 137 1.6E-31 T 14-09-2016 ccrud_RS03020 3517d8a1c140d064f5ef6782a1884310 225 SUPERFAMILY SSF53067 112 201 3.63E-8 T 14-09-2016 ccrud_RS05325 026638b8639b74e3b9eb3c26e25a94d8 368 Gene3D G3DSA:3.90.1150.10 247 367 3.9E-18 T 14-09-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 ccrud_RS05325 026638b8639b74e3b9eb3c26e25a94d8 368 PANTHER PTHR11751 16 368 2.7E-114 T 14-09-2016 ccrud_RS05325 026638b8639b74e3b9eb3c26e25a94d8 368 SUPERFAMILY SSF53383 9 367 7.69E-67 T 14-09-2016 IPR015424 Pyridoxal phosphate-dependent transferase ccrud_RS05325 026638b8639b74e3b9eb3c26e25a94d8 368 TIGRFAM TIGR03539 DapC_actino: succinyldiaminopimelate transaminase 12 367 1.2E-165 T 14-09-2016 IPR019880 Succinyldiaminopimelate transaminase, DapC, actinobacteria ccrud_RS05325 026638b8639b74e3b9eb3c26e25a94d8 368 Pfam PF00155 Aminotransferase class I and II 35 367 1.0E-33 T 14-09-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 ccrud_RS05325 026638b8639b74e3b9eb3c26e25a94d8 368 Gene3D G3DSA:3.40.640.10 55 246 2.3E-37 T 14-09-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 ccrud_RS05325 026638b8639b74e3b9eb3c26e25a94d8 368 PANTHER PTHR11751:SF354 16 368 2.7E-114 T 14-09-2016 ccrud_RS10640 7dfab67311937c609bea49d41ed26e22 247 Gene3D G3DSA:3.40.1080.10 4 232 2.8E-97 T 14-09-2016 ccrud_RS10640 7dfab67311937c609bea49d41ed26e22 247 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 14-09-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 ccrud_RS10640 7dfab67311937c609bea49d41ed26e22 247 SUPERFAMILY SSF100950 2 241 2.02E-83 T 14-09-2016 ccrud_RS10640 7dfab67311937c609bea49d41ed26e22 247 SMART SM00882 6 233 9.0E-81 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS10640 7dfab67311937c609bea49d41ed26e22 247 Pfam PF01144 Coenzyme A transferase 8 232 3.0E-68 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS10640 7dfab67311937c609bea49d41ed26e22 247 PANTHER PTHR13707 1 247 4.7E-129 T 14-09-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 ccrud_RS04055 477cf15b2c4289339610289624c776cd 233 Gene3D G3DSA:3.20.10.10 83 198 3.3E-9 T 14-09-2016 ccrud_RS04055 477cf15b2c4289339610289624c776cd 233 SUPERFAMILY SSF56752 5 211 7.15E-21 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS04055 477cf15b2c4289339610289624c776cd 233 Pfam PF01063 Amino-transferase class IV 4 196 1.3E-11 T 14-09-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 ccrud_RS03375 9103499b15e042e172083ee89a4e9eb6 300 Pfam PF06271 RDD family 166 292 8.3E-16 T 14-09-2016 IPR010432 RDD ccrud_RS03290 51028e13b3c2171c8d73580a3e2b0458 758 Pfam PF02554 Carbon starvation protein CstA 61 438 1.1E-164 T 14-09-2016 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 ccrud_RS03290 51028e13b3c2171c8d73580a3e2b0458 758 PANTHER PTHR30252:SF3 34 729 0.0 T 14-09-2016 ccrud_RS03290 51028e13b3c2171c8d73580a3e2b0458 758 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 497 626 4.0E-31 T 14-09-2016 IPR025299 CstA, C-terminal domain ccrud_RS03290 51028e13b3c2171c8d73580a3e2b0458 758 PANTHER PTHR30252 34 729 0.0 T 14-09-2016 ccrud_RS03970 81f169da14d6223156b30b2d22193d61 196 SMART SM00756 13 154 1.4E-52 T 14-09-2016 IPR012932 Vitamin K epoxide reductase ccrud_RS03970 81f169da14d6223156b30b2d22193d61 196 PANTHER PTHR34573 6 155 1.4E-20 T 14-09-2016 ccrud_RS03970 81f169da14d6223156b30b2d22193d61 196 Pfam PF07884 Vitamin K epoxide reductase family 18 150 2.0E-28 T 14-09-2016 IPR012932 Vitamin K epoxide reductase ccrud_RS00425 63dfc687b609e54622b120be43b5d027 131 Gene3D G3DSA:3.10.450.50 12 130 1.7E-14 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS00425 63dfc687b609e54622b120be43b5d027 131 Pfam PF13577 SnoaL-like domain 12 128 7.1E-9 T 14-09-2016 IPR009959 Polyketide cyclase SnoaL-like domain ccrud_RS00425 63dfc687b609e54622b120be43b5d027 131 SUPERFAMILY SSF54427 10 129 1.15E-18 T 14-09-2016 IPR032710 NTF2-like domain ccrud_RS01520 2228d791ca7996a041ee55ba73c4fe4a 247 Pfam PF00293 NUDIX domain 75 171 9.0E-11 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS01520 2228d791ca7996a041ee55ba73c4fe4a 247 PANTHER PTHR12992 3 247 7.6E-33 T 14-09-2016 ccrud_RS01520 2228d791ca7996a041ee55ba73c4fe4a 247 SUPERFAMILY SSF55811 75 215 1.27E-25 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS01520 2228d791ca7996a041ee55ba73c4fe4a 247 Gene3D G3DSA:3.90.79.10 53 219 4.0E-33 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS09610 f664701d99a47625a0631eb19cab6694 539 Gene3D G3DSA:1.20.810.10 10 428 7.0E-88 T 14-09-2016 IPR027387 Cytochrome b/b6-like domain ccrud_RS09610 f664701d99a47625a0631eb19cab6694 539 SUPERFAMILY SSF81342 9 288 1.19E-63 T 14-09-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 ccrud_RS09610 f664701d99a47625a0631eb19cab6694 539 PANTHER PTHR19271 3 63 7.3E-184 T 14-09-2016 ccrud_RS09610 f664701d99a47625a0631eb19cab6694 539 PANTHER PTHR19271 81 457 7.3E-184 T 14-09-2016 ccrud_RS09610 f664701d99a47625a0631eb19cab6694 539 PANTHER PTHR19271:SF7 3 63 7.3E-184 T 14-09-2016 ccrud_RS09610 f664701d99a47625a0631eb19cab6694 539 Pfam PF13631 Cytochrome b(N-terminal)/b6/petB 109 282 1.5E-60 T 14-09-2016 IPR005797 Cytochrome b/b6, N-terminal GO:0009055|GO:0016020|GO:0016491 ccrud_RS09610 f664701d99a47625a0631eb19cab6694 539 PANTHER PTHR19271:SF7 81 457 7.3E-184 T 14-09-2016 ccrud_RS02370 fd16f2e3a9648607e2ab7eea1e1bee58 521 PANTHER PTHR11699 32 520 5.4E-123 T 14-09-2016 ccrud_RS02370 fd16f2e3a9648607e2ab7eea1e1bee58 521 Pfam PF00171 Aldehyde dehydrogenase family 17 428 9.4E-54 T 14-09-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS02370 fd16f2e3a9648607e2ab7eea1e1bee58 521 SUPERFAMILY SSF53720 23 511 3.27E-101 T 14-09-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 ccrud_RS02370 fd16f2e3a9648607e2ab7eea1e1bee58 521 Gene3D G3DSA:3.40.605.10 9 263 2.1E-50 T 14-09-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 ccrud_RS02370 fd16f2e3a9648607e2ab7eea1e1bee58 521 PANTHER PTHR11699:SF10 32 520 5.4E-123 T 14-09-2016 ccrud_RS02370 fd16f2e3a9648607e2ab7eea1e1bee58 521 Gene3D G3DSA:3.40.309.10 266 455 1.5E-49 T 14-09-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 ccrud_RS12680 ccd929db1c7336965da6824e44258f4d 138 Gene3D G3DSA:3.10.180.10 11 136 2.4E-34 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS12680 ccd929db1c7336965da6824e44258f4d 138 SUPERFAMILY SSF54593 3 135 1.55E-27 T 14-09-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase ccrud_RS12680 ccd929db1c7336965da6824e44258f4d 138 PANTHER PTHR33990 3 137 3.1E-32 T 14-09-2016 ccrud_RS12680 ccd929db1c7336965da6824e44258f4d 138 PANTHER PTHR33990:SF1 3 137 3.1E-32 T 14-09-2016 ccrud_RS12680 ccd929db1c7336965da6824e44258f4d 138 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 5 132 1.4E-9 T 14-09-2016 IPR028973 3-demethylubiquinone-9 3-methyltransferase ccrud_RS03790 7b762a14a1c2c6b566f2766dae79ac7c 238 PANTHER PTHR22769:SF7 102 238 4.7E-22 T 14-09-2016 ccrud_RS03790 7b762a14a1c2c6b566f2766dae79ac7c 238 Gene3D G3DSA:3.90.79.10 99 236 1.2E-21 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS03790 7b762a14a1c2c6b566f2766dae79ac7c 238 SUPERFAMILY SSF55811 67 226 9.88E-21 T 14-09-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 ccrud_RS03790 7b762a14a1c2c6b566f2766dae79ac7c 238 PANTHER PTHR22769 102 238 4.7E-22 T 14-09-2016 ccrud_RS03790 7b762a14a1c2c6b566f2766dae79ac7c 238 Pfam PF00293 NUDIX domain 109 214 2.3E-7 T 14-09-2016 IPR000086 NUDIX hydrolase domain GO:0016787 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 PANTHER PTHR30371 1 44 2.1E-73 T 14-09-2016 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 3 235 3.7E-62 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 95 113 1.3E-35 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 163 191 1.3E-35 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 113 139 1.3E-35 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 2 29 1.3E-35 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 Pfam PF00902 Sec-independent protein translocase protein (TatC) 5 230 1.6E-59 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 ProSitePatterns PS01218 TatC family signature. 163 182 - T 14-09-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 1 250 16.963 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 PANTHER PTHR30371 61 269 2.1E-73 T 14-09-2016 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 PANTHER PTHR30371:SF0 61 269 2.1E-73 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ccrud_RS07235 1b70b6da7a03d318a0eb4e4d58e4d397 314 PANTHER PTHR30371:SF0 1 44 2.1E-73 T 14-09-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 ccrud_RS05605 11398f2a087f212c2dd579bcb55252ae 284 PANTHER PTHR38133:SF1 50 186 8.6E-15 T 14-09-2016 ccrud_RS05605 11398f2a087f212c2dd579bcb55252ae 284 PANTHER PTHR38133 50 186 8.6E-15 T 14-09-2016 ccrud_RS12585 8112e746fd9ae2441ffbc86610850e38 377 Gene3D G3DSA:3.40.50.1820 196 326 4.5E-7 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS12585 8112e746fd9ae2441ffbc86610850e38 377 SUPERFAMILY SSF53474 237 327 8.7E-9 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS12585 8112e746fd9ae2441ffbc86610850e38 377 Pfam PF06259 Alpha/beta hydrolase 179 327 6.0E-21 T 14-09-2016 IPR010427 Protein of unknown function DUF1023 ccrud_RS05540 a74e0d7a243ebd5a514a75d79e4d3ca0 341 PANTHER PTHR30365 1 329 4.2E-102 T 14-09-2016 ccrud_RS05540 a74e0d7a243ebd5a514a75d79e4d3ca0 341 PIRSF PIRSF000267 1 337 3.6E-105 T 14-09-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 ccrud_RS05540 a74e0d7a243ebd5a514a75d79e4d3ca0 341 PANTHER PTHR30365:SF6 1 329 4.2E-102 T 14-09-2016 ccrud_RS05540 a74e0d7a243ebd5a514a75d79e4d3ca0 341 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 3 322 1.3E-97 T 14-09-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 ccrud_RS05540 a74e0d7a243ebd5a514a75d79e4d3ca0 341 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 3 216 1.2E-61 T 14-09-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 ccrud_RS03225 b4d44803ca4bab5bec2f8740b1ae94f1 149 Pfam PF03703 Bacterial PH domain 62 137 1.5E-11 T 14-09-2016 IPR005182 Domain of unknown function DUF304 ccrud_RS03225 b4d44803ca4bab5bec2f8740b1ae94f1 149 PANTHER PTHR34473:SF2 1 145 3.9E-21 T 14-09-2016 ccrud_RS03225 b4d44803ca4bab5bec2f8740b1ae94f1 149 PANTHER PTHR34473 1 145 3.9E-21 T 14-09-2016 ccrud_RS07490 00593edcbefc8ec084e503754a9cf959 587 Gene3D G3DSA:3.90.1720.10 447 586 5.8E-42 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS07490 00593edcbefc8ec084e503754a9cf959 587 SUPERFAMILY SSF54001 450 586 6.38E-35 T 14-09-2016 ccrud_RS07490 00593edcbefc8ec084e503754a9cf959 587 PANTHER PTHR21666 455 473 3.6E-22 T 14-09-2016 ccrud_RS07490 00593edcbefc8ec084e503754a9cf959 587 PANTHER PTHR21666 495 579 3.6E-22 T 14-09-2016 ccrud_RS07490 00593edcbefc8ec084e503754a9cf959 587 PANTHER PTHR21666 42 56 3.6E-22 T 14-09-2016 ccrud_RS07490 00593edcbefc8ec084e503754a9cf959 587 Pfam PF00877 NlpC/P60 family 464 584 1.5E-27 T 14-09-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS02100 c4910e19bed78b443ff98db91f432ba2 65 Gene3D G3DSA:1.10.150.20 16 62 7.2E-5 T 14-09-2016 ccrud_RS02100 c4910e19bed78b443ff98db91f432ba2 65 SUPERFAMILY SSF47789 14 62 1.83E-6 T 14-09-2016 ccrud_RS04685 8f9789c4a0ea43e3c38fc5374bc8f1f1 303 Gene3D G3DSA:3.40.50.300 2 231 5.0E-67 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04685 8f9789c4a0ea43e3c38fc5374bc8f1f1 303 Pfam PF00005 ABC transporter 23 160 1.0E-27 T 14-09-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 ccrud_RS04685 8f9789c4a0ea43e3c38fc5374bc8f1f1 303 SMART SM00382 31 217 1.0E-8 T 14-09-2016 IPR003593 AAA+ ATPase domain ccrud_RS04685 8f9789c4a0ea43e3c38fc5374bc8f1f1 303 SUPERFAMILY SSF52540 4 232 7.35E-62 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS04685 8f9789c4a0ea43e3c38fc5374bc8f1f1 303 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 14-09-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 ccrud_RS04685 8f9789c4a0ea43e3c38fc5374bc8f1f1 303 PANTHER PTHR24220:SF414 8 275 7.7E-94 T 14-09-2016 ccrud_RS04685 8f9789c4a0ea43e3c38fc5374bc8f1f1 303 PANTHER PTHR24220 8 275 7.7E-94 T 14-09-2016 ccrud_RS08640 a240229bc182a7fd2aa0110b4230a8b1 178 Gene3D G3DSA:3.30.300.70 6 86 2.8E-12 T 14-09-2016 IPR028989 Ribosome maturation factor RimP, N-terminal ccrud_RS08640 a240229bc182a7fd2aa0110b4230a8b1 178 PANTHER PTHR33867 1 171 1.6E-17 T 14-09-2016 ccrud_RS08640 a240229bc182a7fd2aa0110b4230a8b1 178 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 7 158 17.303 T 14-09-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 ccrud_RS08640 a240229bc182a7fd2aa0110b4230a8b1 178 SUPERFAMILY SSF75420 2 89 3.14E-15 T 14-09-2016 IPR028989 Ribosome maturation factor RimP, N-terminal ccrud_RS08640 a240229bc182a7fd2aa0110b4230a8b1 178 Pfam PF02576 Putative ribosome maturation factor RimP 12 153 5.6E-27 T 14-09-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 ccrud_RS08640 a240229bc182a7fd2aa0110b4230a8b1 178 PANTHER PTHR33867:SF1 1 171 1.6E-17 T 14-09-2016 ccrud_RS11645 5050a119424453fece306a83a7c0622f 71 Pfam PF11273 Protein of unknown function (DUF3073) 2 58 1.4E-23 T 14-09-2016 IPR021426 Protein of unknown function DUF3073 ccrud_RS06765 d2b2cdc9042fa71cd4f5f5dfaa435ece 418 Gene3D G3DSA:1.25.40.10 241 399 7.0E-8 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS06765 d2b2cdc9042fa71cd4f5f5dfaa435ece 418 SUPERFAMILY SSF48452 268 401 1.46E-6 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS13350 917cd3433639c2f0ac3a4f0350382791 537 Pfam PF13473 Cupredoxin-like domain 445 510 1.4E-6 T 14-09-2016 IPR028096 EfeO-type cupredoxin-like domain ccrud_RS13350 917cd3433639c2f0ac3a4f0350382791 537 SUPERFAMILY SSF49503 451 536 2.16E-12 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS13350 917cd3433639c2f0ac3a4f0350382791 537 Gene3D G3DSA:2.60.40.420 447 535 6.1E-9 T 14-09-2016 IPR008972 Cupredoxin ccrud_RS11430 3a0823e80a070c789471b7f1a3c3b923 229 Pfam PF07853 Protein of unknown function (DUF1648) 16 59 1.4E-14 T 14-09-2016 IPR012867 Domain of unknown function DUF1648 ccrud_RS05090 51cfb9a7deae8e459e4667ee404eebb2 651 SMART SM00327 465 647 7.3E-9 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS05090 51cfb9a7deae8e459e4667ee404eebb2 651 SUPERFAMILY SSF53300 468 640 4.11E-14 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS03240 71e811c9aeca751ea3d2e35cc2a4323a 266 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 3 244 3.6E-29 T 14-09-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase ccrud_RS03620 6bdcc283680e133478de407ac4004a5a 104 Hamap MF_01479 Transcriptional regulator WhiB [whiB]. 23 103 16.708 T 14-09-2016 IPR003482 Transcription factor WhiB ccrud_RS03620 6bdcc283680e133478de407ac4004a5a 104 Pfam PF02467 Transcription factor WhiB 36 99 3.2E-28 T 14-09-2016 IPR003482 Transcription factor WhiB ccrud_RS03620 6bdcc283680e133478de407ac4004a5a 104 PANTHER PTHR38839:SF4 7 103 2.3E-45 T 14-09-2016 ccrud_RS03620 6bdcc283680e133478de407ac4004a5a 104 PANTHER PTHR38839 7 103 2.3E-45 T 14-09-2016 ccrud_RS12350 abe014cf8c5848b6848f728e90633cf1 199 Pfam PF12146 Serine aminopeptidase, S33 35 111 2.9E-7 T 14-09-2016 IPR022742 Serine aminopeptidase, S33 ccrud_RS12350 abe014cf8c5848b6848f728e90633cf1 199 PANTHER PTHR10992 41 199 9.2E-13 T 14-09-2016 ccrud_RS12350 abe014cf8c5848b6848f728e90633cf1 199 Gene3D G3DSA:3.40.50.1820 37 198 4.4E-17 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS12350 abe014cf8c5848b6848f728e90633cf1 199 SUPERFAMILY SSF53474 34 198 4.13E-18 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS00300 8a106d2b7d1650b49b44b52c42870ecf 237 Pfam PF16316 Domain of unknown function (DUF4956) 35 197 1.3E-21 T 14-09-2016 IPR032531 Protein of unknown function DUF4956 ccrud_RS07380 033c15276658b444b61a1c61cca26f94 293 PANTHER PTHR30622 18 293 5.1E-119 T 14-09-2016 ccrud_RS07380 033c15276658b444b61a1c61cca26f94 293 Pfam PF02673 Bacitracin resistance protein BacA 26 281 9.1E-77 T 14-09-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 ccrud_RS07380 033c15276658b444b61a1c61cca26f94 293 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 26 276 3.7E-87 T 14-09-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 ccrud_RS07380 033c15276658b444b61a1c61cca26f94 293 PANTHER PTHR30622:SF4 18 293 5.1E-119 T 14-09-2016 ccrud_RS07380 033c15276658b444b61a1c61cca26f94 293 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 20 286 18.339 T 14-09-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 ccrud_RS02140 4d7866efb650315488492baae9e55600 301 ProDom PD040376 SCO3349 RV0495C/MT0515 ML2435 MB0506C CGL0407 28 290 7.0E-145 T 14-09-2016 ccrud_RS04915 5336b9093041756bb2ecb0497940d1fb 224 SUPERFAMILY SSF53850 15 181 1.1E-9 T 14-09-2016 ccrud_RS04915 5336b9093041756bb2ecb0497940d1fb 224 Gene3D G3DSA:3.40.190.10 27 116 8.1E-4 T 14-09-2016 ccrud_RS03135 ef697d99f873d658d942448421631401 287 PANTHER PTHR31902 6 259 8.3E-18 T 14-09-2016 ccrud_RS03135 ef697d99f873d658d942448421631401 287 PANTHER PTHR31902:SF6 6 259 8.3E-18 T 14-09-2016 ccrud_RS03135 ef697d99f873d658d942448421631401 287 Pfam PF06999 Sucrase/ferredoxin-like 13 192 4.5E-19 T 14-09-2016 IPR009737 Thioredoxin-like ferredoxin ccrud_RS03135 ef697d99f873d658d942448421631401 287 SUPERFAMILY SSF52833 119 197 3.58E-6 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS03135 ef697d99f873d658d942448421631401 287 PIRSF PIRSF035042 1 287 5.9E-84 T 14-09-2016 IPR010350 Thioredoxin-like ferredoxin, bacteria ccrud_RS03135 ef697d99f873d658d942448421631401 287 Gene3D G3DSA:3.40.30.10 120 192 2.6E-5 T 14-09-2016 IPR012336 Thioredoxin-like fold ccrud_RS01790 16bbae1ee81902988f314acddc9dfed1 128 PANTHER PTHR34187 10 127 2.3E-14 T 14-09-2016 ccrud_RS01790 16bbae1ee81902988f314acddc9dfed1 128 Pfam PF02656 Domain of unknown function (DUF202) 27 93 2.4E-15 T 14-09-2016 IPR003807 Domain of unknown function DUF202 ccrud_RS10920 4a2501a72add375958f6456bf25e1ae1 647 Pfam PF13454 FAD-NAD(P)-binding 9 204 5.2E-30 T 14-09-2016 ccrud_RS10920 4a2501a72add375958f6456bf25e1ae1 647 Gene3D G3DSA:3.50.50.60 138 213 1.6E-5 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS10920 4a2501a72add375958f6456bf25e1ae1 647 Gene3D G3DSA:3.50.50.60 4 63 1.6E-5 T 14-09-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 ccrud_RS03945 c25cab3c61240d75e5840434f7c89d3d 463 Pfam PF05272 Virulence-associated protein E 138 335 8.1E-62 T 14-09-2016 IPR007936 Virulence-associated E ccrud_RS03945 c25cab3c61240d75e5840434f7c89d3d 463 PANTHER PTHR34985 38 387 3.9E-28 T 14-09-2016 ccrud_RS13935 d784341040768286b033195b24eea8bd 309 PANTHER PTHR13696 4 298 8.1E-94 T 14-09-2016 ccrud_RS13935 d784341040768286b033195b24eea8bd 309 SUPERFAMILY SSF52540 35 287 4.77E-64 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13935 d784341040768286b033195b24eea8bd 309 Gene3D G3DSA:3.40.50.300 38 287 3.4E-69 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13935 d784341040768286b033195b24eea8bd 309 PANTHER PTHR13696:SF52 4 298 8.1E-94 T 14-09-2016 ccrud_RS13935 d784341040768286b033195b24eea8bd 309 Pfam PF13614 AAA domain 36 215 1.2E-57 T 14-09-2016 IPR025669 AAA domain ccrud_RS05655 5fe66b03c3757aa877383fdc4c7e0419 162 PANTHER PTHR33164:SF1 4 126 2.3E-27 T 14-09-2016 ccrud_RS05655 5fe66b03c3757aa877383fdc4c7e0419 162 Gene3D G3DSA:1.10.10.10 2 147 5.9E-33 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05655 5fe66b03c3757aa877383fdc4c7e0419 162 SMART SM00347 32 135 4.6E-12 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS05655 5fe66b03c3757aa877383fdc4c7e0419 162 PANTHER PTHR33164 4 126 2.3E-27 T 14-09-2016 ccrud_RS05655 5fe66b03c3757aa877383fdc4c7e0419 162 SUPERFAMILY SSF46785 3 147 2.51E-27 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05655 5fe66b03c3757aa877383fdc4c7e0419 162 Pfam PF13463 Winged helix DNA-binding domain 39 107 6.4E-9 T 14-09-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 ccrud_RS05720 616769609b5c4486505a735a46161fb8 234 SUPERFAMILY SSF46785 12 110 4.77E-8 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05720 616769609b5c4486505a735a46161fb8 234 Gene3D G3DSA:1.10.10.10 15 95 4.5E-10 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS12810 ba9cc2172379062cf828c94c36bbd0a0 201 Pfam PF08044 Domain of unknown function (DUF1707) 11 63 4.9E-20 T 14-09-2016 IPR012551 Protein of unknown function DUF1707 ccrud_RS08645 92b98ca8c199e1ddee74f1e9f111be43 276 Pfam PF14530 Domain of unknown function (DUF4439) 160 268 3.1E-8 T 14-09-2016 IPR029447 Domain of unknown function DUF4439 ccrud_RS08645 92b98ca8c199e1ddee74f1e9f111be43 276 Gene3D G3DSA:1.20.1260.10 149 271 2.4E-24 T 14-09-2016 IPR012347 Ferritin-related ccrud_RS08645 92b98ca8c199e1ddee74f1e9f111be43 276 SUPERFAMILY SSF47240 149 274 1.14E-18 T 14-09-2016 IPR009078 Ferritin-like superfamily ccrud_RS02135 068bb9c3190c14b7406084bb24e0bfdd 856 Pfam PF02687 FtsX-like permease family 260 378 9.7E-18 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS02135 068bb9c3190c14b7406084bb24e0bfdd 856 Pfam PF02687 FtsX-like permease family 735 851 3.2E-20 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS02135 068bb9c3190c14b7406084bb24e0bfdd 856 PANTHER PTHR30489:SF9 231 856 1.7E-99 T 14-09-2016 ccrud_RS02135 068bb9c3190c14b7406084bb24e0bfdd 856 PANTHER PTHR30489:SF9 1 186 1.7E-99 T 14-09-2016 ccrud_RS02135 068bb9c3190c14b7406084bb24e0bfdd 856 PANTHER PTHR30489 231 856 1.7E-99 T 14-09-2016 ccrud_RS02135 068bb9c3190c14b7406084bb24e0bfdd 856 PANTHER PTHR30489 1 186 1.7E-99 T 14-09-2016 ccrud_RS02135 068bb9c3190c14b7406084bb24e0bfdd 856 Pfam PF12704 MacB-like periplasmic core domain 2 225 1.6E-11 T 14-09-2016 IPR025857 MacB-like periplasmic core domain ccrud_RS02135 068bb9c3190c14b7406084bb24e0bfdd 856 Pfam PF12704 MacB-like periplasmic core domain 488 695 1.8E-9 T 14-09-2016 IPR025857 MacB-like periplasmic core domain ccrud_RS09565 4054439cd1d4aa9810be7dede2e49d46 810 Pfam PF09594 Protein of unknown function (DUF2029) 95 331 1.7E-59 T 14-09-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 ccrud_RS09565 4054439cd1d4aa9810be7dede2e49d46 810 Pfam PF09594 Protein of unknown function (DUF2029) 493 709 1.8E-14 T 14-09-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 ccrud_RS05615 624bb942dcebc5e39c909022350f35a5 876 SUPERFAMILY SSF52540 230 266 2.43E-18 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05615 624bb942dcebc5e39c909022350f35a5 876 SUPERFAMILY SSF52540 669 857 2.43E-18 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05615 624bb942dcebc5e39c909022350f35a5 876 SUPERFAMILY SSF52540 1 94 2.43E-18 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05615 624bb942dcebc5e39c909022350f35a5 876 Pfam PF13175 AAA ATPase domain 1 408 4.0E-13 T 14-09-2016 ccrud_RS05615 624bb942dcebc5e39c909022350f35a5 876 Gene3D G3DSA:3.40.50.300 495 496 3.7E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05615 624bb942dcebc5e39c909022350f35a5 876 Gene3D G3DSA:3.40.50.300 1 172 3.7E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS05615 624bb942dcebc5e39c909022350f35a5 876 Gene3D G3DSA:3.40.50.300 743 858 3.7E-20 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS09425 91bb41dc3b91099b76523543dd5bb55a 150 Hamap MF_01197 Cell division protein SepF [sepF]. 1 146 15.342 T 14-09-2016 IPR023052 Cell division protein SepF GO:0090529 ccrud_RS09425 91bb41dc3b91099b76523543dd5bb55a 150 Pfam PF04472 Protein of unknown function (DUF552) 67 134 4.6E-23 T 14-09-2016 IPR007561 Cell division protein SepF/SepF-related GO:0000917 ccrud_RS09425 91bb41dc3b91099b76523543dd5bb55a 150 PANTHER PTHR35798 6 148 3.1E-14 T 14-09-2016 ccrud_RS09425 91bb41dc3b91099b76523543dd5bb55a 150 PANTHER PTHR35798:SF1 6 148 3.1E-14 T 14-09-2016 ccrud_RS07460 96c68d2dc21990bd907de21de2d170f2 199 Gene3D G3DSA:1.10.10.60 149 175 8.8E-4 T 14-09-2016 IPR009057 Homeodomain-like GO:0003677 ccrud_RS09945 44aa6037a45b852d14d245e11dac2903 346 Pfam PF09949 Uncharacterized conserved protein (DUF2183) 200 296 2.6E-30 T 14-09-2016 IPR019236 Domain of unknown function DUF2183 ccrud_RS09945 44aa6037a45b852d14d245e11dac2903 346 PANTHER PTHR28208 131 302 1.3E-39 T 14-09-2016 ccrud_RS12985 2dcee7770291a1988902f78c2a1f252e 67 Pfam PF11021 Protein of unknown function (DUF2613) 11 64 8.1E-22 T 14-09-2016 IPR022566 Protein of unknown function DUF2613 ccrud_RS02745 73558400e119c2604f6dbb42fadb0b0e 388 Gene3D G3DSA:1.50.10.20 154 286 3.6E-10 T 14-09-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid ccrud_RS02745 73558400e119c2604f6dbb42fadb0b0e 388 SUPERFAMILY SSF48239 154 291 2.88E-11 T 14-09-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid ccrud_RS13510 60ed5da561a1516a37973201644e8942 485 PIRSF PIRSF010361 13 476 8.6E-183 T 14-09-2016 IPR016570 Uncharacterised conserved protein UCP010361, membrane ccrud_RS13510 60ed5da561a1516a37973201644e8942 485 Pfam PF09594 Protein of unknown function (DUF2029) 154 377 4.2E-16 T 14-09-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 ccrud_RS00305 63435b009c1f4fa4556a06adde2b81c7 547 PANTHER PTHR40050 195 387 1.3E-20 T 14-09-2016 ccrud_RS00305 63435b009c1f4fa4556a06adde2b81c7 547 PANTHER PTHR40050:SF2 195 387 1.3E-20 T 14-09-2016 ccrud_RS00305 63435b009c1f4fa4556a06adde2b81c7 547 Pfam PF08757 CotH protein 198 540 3.4E-31 T 14-09-2016 IPR014867 Spore coat protein CotH ccrud_RS01800 f16d6d3a2b831ffe6a81e86f63359574 173 Pfam PF05901 Excalibur calcium-binding domain 134 169 3.8E-11 T 14-09-2016 IPR008613 Excalibur calcium-binding domain ccrud_RS01800 f16d6d3a2b831ffe6a81e86f63359574 173 SMART SM00894 133 169 1.6E-17 T 14-09-2016 IPR008613 Excalibur calcium-binding domain ccrud_RS07770 048cd05c1aa54fc184736064ff60a376 106 Gene3D G3DSA:1.10.8.50 50 99 4.5E-7 T 14-09-2016 ccrud_RS07770 048cd05c1aa54fc184736064ff60a376 106 SUPERFAMILY SSF46946 58 101 9.42E-5 T 14-09-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 ccrud_RS06265 87ff0d666020e40c9ac82194123f9601 774 SUPERFAMILY SSF52540 266 650 7.91E-39 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06265 87ff0d666020e40c9ac82194123f9601 774 Pfam PF10412 Type IV secretion-system coupling protein DNA-binding domain 300 622 3.6E-10 T 14-09-2016 IPR019476 Type IV secretion system coupling protein TraD, DNA-binding domain ccrud_RS06265 87ff0d666020e40c9ac82194123f9601 774 Gene3D G3DSA:3.40.50.300 501 652 2.3E-31 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS06265 87ff0d666020e40c9ac82194123f9601 774 Gene3D G3DSA:3.40.50.300 299 377 2.3E-31 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07810 4fccfd4cde13c59c842f3b1acf308c41 159 Pfam PF10722 Putative bacterial sensory transduction regulator 18 143 1.1E-11 T 14-09-2016 IPR019660 Putative sensory transduction regulator YbjN ccrud_RS03090 0ad92bcdbd688171d576450ef1a5bcd4 147 Pfam PF15583 Immunity protein 68 4 146 3.8E-42 T 14-09-2016 IPR028276 Immunity protein 68 ccrud_RS00695 f08476750c776c509e417842f7f173cf 252 Pfam PF01925 Sulfite exporter TauE/SafE 10 239 5.0E-23 T 14-09-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 ccrud_RS09545 184718b0e73389941741d1095e531ac5 414 Pfam PF09594 Protein of unknown function (DUF2029) 75 325 5.7E-48 T 14-09-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 ccrud_RS14600 3cde3004422d55b0b1a6673517851ee9 171 Gene3D G3DSA:1.20.1250.20 71 158 5.1E-9 T 14-09-2016 ccrud_RS14600 3cde3004422d55b0b1a6673517851ee9 171 SUPERFAMILY SSF103473 2 159 2.09E-15 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS14600 3cde3004422d55b0b1a6673517851ee9 171 Pfam PF07690 Major Facilitator Superfamily 9 160 8.1E-10 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS08090 16fe9b21adb406da7d2e21502f14e09d 407 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 49 385 3.2E-71 T 14-09-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- ccrud_RS08090 16fe9b21adb406da7d2e21502f14e09d 407 SUPERFAMILY SSF54909 44 388 3.75E-84 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS08090 16fe9b21adb406da7d2e21502f14e09d 407 PANTHER PTHR30521 32 404 2.9E-89 T 14-09-2016 ccrud_RS08090 16fe9b21adb406da7d2e21502f14e09d 407 Pfam PF04261 Dyp-type peroxidase family 49 385 4.3E-79 T 14-09-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- ccrud_RS08090 16fe9b21adb406da7d2e21502f14e09d 407 PANTHER PTHR30521:SF4 32 404 2.9E-89 T 14-09-2016 ccrud_RS07285 62efb8b43b4d440481c8f26b81031b84 278 Pfam PF12705 PD-(D/E)XK nuclease superfamily 17 260 2.9E-36 T 14-09-2016 ccrud_RS07285 62efb8b43b4d440481c8f26b81031b84 278 SUPERFAMILY SSF52980 41 194 2.36E-8 T 14-09-2016 IPR011335 Restriction endonuclease type II-like ccrud_RS07135 6699b9f523608477d7022ce121c5f003 328 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 19 296 6.5E-11 T 14-09-2016 IPR016833 Putative sodium bile acid cotransporter ccrud_RS13410 b829130bc5c9b62fe7e7ee68b8469b04 332 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 13 326 3.0E-112 T 14-09-2016 IPR019949 Luciferase family oxidoreductase, group 1 ccrud_RS13410 b829130bc5c9b62fe7e7ee68b8469b04 332 SUPERFAMILY SSF51679 12 326 1.31E-65 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS13410 b829130bc5c9b62fe7e7ee68b8469b04 332 Pfam PF00296 Luciferase-like monooxygenase 22 297 4.9E-31 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS13410 b829130bc5c9b62fe7e7ee68b8469b04 332 Gene3D G3DSA:3.20.20.30 12 326 3.8E-74 T 14-09-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 ccrud_RS13410 b829130bc5c9b62fe7e7ee68b8469b04 332 PANTHER PTHR30137:SF2 5 321 6.0E-91 T 14-09-2016 ccrud_RS13410 b829130bc5c9b62fe7e7ee68b8469b04 332 PANTHER PTHR30137 5 321 6.0E-91 T 14-09-2016 ccrud_RS06040 332c20f6c9a3b85b0daf2c30e2015dd8 123 SUPERFAMILY SSF102546 1 123 1.31E-35 T 14-09-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 ccrud_RS06040 332c20f6c9a3b85b0daf2c30e2015dd8 123 PANTHER PTHR37831 2 123 8.5E-34 T 14-09-2016 ccrud_RS06040 332c20f6c9a3b85b0daf2c30e2015dd8 123 Gene3D G3DSA:3.40.1650.10 1 123 5.9E-22 T 14-09-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 ccrud_RS06040 332c20f6c9a3b85b0daf2c30e2015dd8 123 Pfam PF05025 RbsD / FucU transport protein family 1 121 1.7E-34 T 14-09-2016 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 ccrud_RS06040 332c20f6c9a3b85b0daf2c30e2015dd8 123 PANTHER PTHR37831:SF1 2 123 8.5E-34 T 14-09-2016 ccrud_RS08180 dedf050de9108f93ef032befbbcc2e7e 232 SUPERFAMILY SSF54909 5 231 1.45E-70 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS08180 dedf050de9108f93ef032befbbcc2e7e 232 Gene3D G3DSA:3.30.70.1030 18 133 2.1E-13 T 14-09-2016 ccrud_RS08180 dedf050de9108f93ef032befbbcc2e7e 232 PANTHER PTHR36843:SF1 14 232 3.4E-29 T 14-09-2016 ccrud_RS08180 dedf050de9108f93ef032befbbcc2e7e 232 Pfam PF06778 Chlorite dismutase 32 222 4.1E-64 T 14-09-2016 IPR010644 Putative heme-dependent peroxidase/Chlorite dismutase ccrud_RS08180 dedf050de9108f93ef032befbbcc2e7e 232 PANTHER PTHR36843 14 232 3.4E-29 T 14-09-2016 ccrud_RS08180 dedf050de9108f93ef032befbbcc2e7e 232 Gene3D G3DSA:3.30.70.1100 134 231 6.8E-38 T 14-09-2016 ccrud_RS13075 0f4316b48a49195592c61a8dcca41c21 618 PANTHER PTHR22754 67 179 1.2E-134 T 14-09-2016 ccrud_RS13075 0f4316b48a49195592c61a8dcca41c21 618 PANTHER PTHR22754 195 606 1.2E-134 T 14-09-2016 ccrud_RS13075 0f4316b48a49195592c61a8dcca41c21 618 Pfam PF00501 AMP-binding enzyme 60 511 2.1E-66 T 14-09-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 ccrud_RS13075 0f4316b48a49195592c61a8dcca41c21 618 Gene3D G3DSA:2.30.38.10 411 501 3.3E-16 T 14-09-2016 ccrud_RS13075 0f4316b48a49195592c61a8dcca41c21 618 Gene3D G3DSA:3.40.50.980 213 378 1.4E-23 T 14-09-2016 ccrud_RS13075 0f4316b48a49195592c61a8dcca41c21 618 SUPERFAMILY SSF56801 42 614 8.77E-83 T 14-09-2016 ccrud_RS13075 0f4316b48a49195592c61a8dcca41c21 618 Gene3D G3DSA:3.40.50.980 61 212 7.1E-20 T 14-09-2016 ccrud_RS13075 0f4316b48a49195592c61a8dcca41c21 618 Gene3D G3DSA:3.30.300.30 503 611 1.0E-12 T 14-09-2016 ccrud_RS04425 1418506f4b45178630ab73c3e3305bc0 148 Pfam PF13610 DDE domain 17 135 1.5E-29 T 14-09-2016 IPR032874 DDE domain ccrud_RS03095 5f6f937cb024d33fc9124fa56dc0f01a 394 Pfam PF04024 PspC domain 51 98 6.3E-12 T 14-09-2016 IPR007168 Phage shock protein, PspC, N-terminal ccrud_RS03095 5f6f937cb024d33fc9124fa56dc0f01a 394 Pfam PF09922 Cell wall-active antibiotics response 4TMS YvqF 300 387 5.7E-8 T 14-09-2016 IPR024425 Cell wall-active antibiotics response 4TMS YvqF ccrud_RS07115 23a56b8de7fccdee9c739d142825079c 462 Pfam PF07690 Major Facilitator Superfamily 76 409 7.4E-28 T 14-09-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 ccrud_RS07115 23a56b8de7fccdee9c739d142825079c 462 PANTHER PTHR23508:SF16 29 461 1.4E-173 T 14-09-2016 ccrud_RS07115 23a56b8de7fccdee9c739d142825079c 462 Gene3D G3DSA:1.20.1250.20 271 459 3.6E-21 T 14-09-2016 ccrud_RS07115 23a56b8de7fccdee9c739d142825079c 462 Gene3D G3DSA:1.20.1250.20 29 244 2.5E-23 T 14-09-2016 ccrud_RS07115 23a56b8de7fccdee9c739d142825079c 462 PANTHER PTHR23508 29 461 1.4E-173 T 14-09-2016 ccrud_RS07115 23a56b8de7fccdee9c739d142825079c 462 ProSitePatterns PS00216 Sugar transport proteins signature 1. 326 343 - T 14-09-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 ccrud_RS07115 23a56b8de7fccdee9c739d142825079c 462 SUPERFAMILY SSF103473 23 461 1.31E-66 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS06455 c8748023415e00d1072186bce1c92439 328 Pfam PF12028 Protein of unknown function (DUF3515) 25 181 5.2E-45 T 14-09-2016 IPR021903 Protein of unknown function DUF3515 ccrud_RS06455 c8748023415e00d1072186bce1c92439 328 Pfam PF12028 Protein of unknown function (DUF3515) 182 327 1.5E-19 T 14-09-2016 IPR021903 Protein of unknown function DUF3515 ccrud_RS03160 5823fc494dbabfa03dbcd6c24d6bf67e 305 ProSitePatterns PS01045 Squalene and phytoene synthases signature 2. 182 208 - T 14-09-2016 IPR019845 Squalene/phytoene synthase, conserved site GO:0016765 ccrud_RS03160 5823fc494dbabfa03dbcd6c24d6bf67e 305 Gene3D G3DSA:1.10.600.10 19 302 3.2E-44 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS03160 5823fc494dbabfa03dbcd6c24d6bf67e 305 SUPERFAMILY SSF48576 22 301 2.88E-50 T 14-09-2016 IPR008949 Isoprenoid synthase domain ccrud_RS03160 5823fc494dbabfa03dbcd6c24d6bf67e 305 PANTHER PTHR31480 21 290 7.7E-33 T 14-09-2016 ccrud_RS03160 5823fc494dbabfa03dbcd6c24d6bf67e 305 Pfam PF00494 Squalene/phytoene synthase 30 210 7.1E-27 T 14-09-2016 IPR002060 Squalene/phytoene synthase GO:0009058|GO:0016740 ccrud_RS11185 18999d4fdb390bc4250c0c8abea3e543 91 Pfam PF12277 Protein of unknown function (DUF3618) 2 47 5.6E-17 T 14-09-2016 IPR022062 Protein of unknown function DUF3618 ccrud_RS06260 e93d05d6666ff8ef1d6cc3ed90d2972b 267 Pfam PF13814 Replication-relaxation 18 212 3.8E-35 T 14-09-2016 IPR025855 Plasmid replication-relaxation ccrud_RS11965 c898a089e7bc47b157932884492d8296 321 PANTHER PTHR30465:SF0 3 320 1.6E-85 T 14-09-2016 ccrud_RS11965 c898a089e7bc47b157932884492d8296 321 PANTHER PTHR30465 3 320 1.6E-85 T 14-09-2016 ccrud_RS11965 c898a089e7bc47b157932884492d8296 321 SUPERFAMILY SSF161098 93 304 2.35E-17 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11965 c898a089e7bc47b157932884492d8296 321 Gene3D G3DSA:1.10.3720.10 93 314 5.7E-14 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS11965 c898a089e7bc47b157932884492d8296 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 319 6.5E-35 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS12480 1d34d5e10a2677c6dc49a50ad725aaa0 283 SUPERFAMILY SSF111331 83 151 7.63E-5 T 14-09-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain ccrud_RS01770 9764f99875412b080e95f19d270d55d5 347 Gene3D G3DSA:3.60.15.10 12 147 1.0E-42 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01770 9764f99875412b080e95f19d270d55d5 347 Gene3D G3DSA:3.60.15.10 184 336 1.0E-42 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01770 9764f99875412b080e95f19d270d55d5 347 SUPERFAMILY SSF56281 135 155 1.97E-40 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01770 9764f99875412b080e95f19d270d55d5 347 SUPERFAMILY SSF56281 13 108 1.97E-40 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01770 9764f99875412b080e95f19d270d55d5 347 SUPERFAMILY SSF56281 186 338 1.97E-40 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01770 9764f99875412b080e95f19d270d55d5 347 Pfam PF00753 Metallo-beta-lactamase superfamily 37 296 3.0E-7 T 14-09-2016 IPR001279 Metallo-beta-lactamase ccrud_RS01770 9764f99875412b080e95f19d270d55d5 347 PANTHER PTHR12553 12 341 3.9E-30 T 14-09-2016 ccrud_RS09205 2f63224891f4e662b84778e084c32ac9 397 Pfam PF10722 Putative bacterial sensory transduction regulator 245 381 4.5E-30 T 14-09-2016 IPR019660 Putative sensory transduction regulator YbjN ccrud_RS09205 2f63224891f4e662b84778e084c32ac9 397 Pfam PF10722 Putative bacterial sensory transduction regulator 24 145 4.2E-9 T 14-09-2016 IPR019660 Putative sensory transduction regulator YbjN ccrud_RS02080 4c3d2028702a16044ca8b5671f496976 268 Pfam PF11209 Protein of unknown function (DUF2993) 26 255 5.2E-15 T 14-09-2016 IPR021373 Protein of unknown function DUF2993 ccrud_RS12270 98e49d046c6c63e08165629fcf66f309 366 SUPERFAMILY SSF52540 53 76 2.21E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS12270 98e49d046c6c63e08165629fcf66f309 366 SUPERFAMILY SSF52540 147 241 2.21E-5 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS00700 dc315b4d55fe421e092b84f7173836ff 245 PANTHER PTHR30506 10 178 3.0E-33 T 14-09-2016 ccrud_RS00700 dc315b4d55fe421e092b84f7173836ff 245 PANTHER PTHR30506:SF3 10 178 3.0E-33 T 14-09-2016 ccrud_RS00700 dc315b4d55fe421e092b84f7173836ff 245 Pfam PF03458 UPF0126 domain 19 91 3.3E-15 T 14-09-2016 IPR005115 Uncharacterised domain UPF0126 ccrud_RS00700 dc315b4d55fe421e092b84f7173836ff 245 Pfam PF03458 UPF0126 domain 106 178 1.6E-16 T 14-09-2016 IPR005115 Uncharacterised domain UPF0126 ccrud_RS11110 399b75891769abfb8f670ad60f29f171 414 SUPERFAMILY SSF81296 70 191 3.22E-22 T 14-09-2016 IPR014756 Immunoglobulin E-set ccrud_RS11110 399b75891769abfb8f670ad60f29f171 414 Pfam PF11806 Domain of unknown function (DUF3327) 95 161 3.7E-13 T 14-09-2016 IPR021764 Enterochelin esterase, N-terminal GO:0005506|GO:0005737|GO:0006826|GO:0008849 ccrud_RS11110 399b75891769abfb8f670ad60f29f171 414 Pfam PF00756 Putative esterase 219 409 9.2E-15 T 14-09-2016 IPR000801 Putative esterase ccrud_RS11110 399b75891769abfb8f670ad60f29f171 414 Gene3D G3DSA:3.40.50.1820 218 413 1.8E-36 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11110 399b75891769abfb8f670ad60f29f171 414 SUPERFAMILY SSF53474 220 410 1.68E-24 T 14-09-2016 IPR029058 Alpha/Beta hydrolase fold ccrud_RS11110 399b75891769abfb8f670ad60f29f171 414 Gene3D G3DSA:2.60.40.10 70 177 1.3E-21 T 14-09-2016 IPR013783 Immunoglobulin-like fold ccrud_RS09080 d315c0f9d4f8689cf36a957cdac93587 178 Pfam PF02620 Uncharacterized ACR, COG1399 60 177 1.4E-20 T 14-09-2016 IPR003772 Protein of unknown function DUF177 ccrud_RS06345 18fdec4f096d056162aa7ea6eb6728c8 128 Gene3D G3DSA:3.30.700.10 26 96 1.3E-10 T 14-09-2016 ccrud_RS06345 18fdec4f096d056162aa7ea6eb6728c8 128 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 25 44 3.4E-6 T 14-09-2016 IPR012902 Prokaryotic N-terminal methylation site ccrud_RS06345 18fdec4f096d056162aa7ea6eb6728c8 128 SUPERFAMILY SSF54523 26 114 2.75E-13 T 14-09-2016 ccrud_RS09520 046e011a0c432c7ea7bef998a9941d65 326 SUPERFAMILY SSF51730 19 313 1.86E-78 T 14-09-2016 IPR029041 FAD-linked oxidoreductase-like ccrud_RS09520 046e011a0c432c7ea7bef998a9941d65 326 PANTHER PTHR21091 161 312 3.3E-26 T 14-09-2016 ccrud_RS09520 046e011a0c432c7ea7bef998a9941d65 326 Pfam PF02219 Methylenetetrahydrofolate reductase 23 311 3.0E-78 T 14-09-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 ccrud_RS09520 046e011a0c432c7ea7bef998a9941d65 326 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 28 310 5.5E-93 T 14-09-2016 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 ccrud_RS09520 046e011a0c432c7ea7bef998a9941d65 326 Gene3D G3DSA:3.20.20.220 17 315 8.8E-90 T 14-09-2016 IPR029041 FAD-linked oxidoreductase-like ccrud_RS09520 046e011a0c432c7ea7bef998a9941d65 326 PANTHER PTHR21091:SF31 161 312 3.3E-26 T 14-09-2016 ccrud_RS01000 208a246314c7f45304bc80c28e5a3823 1146 Pfam PF04602 Mycobacterial cell wall arabinan synthesis protein 42 700 2.2E-264 T 14-09-2016 IPR007680 Arabinofuranosyltransferase, N-terminal GO:0052636|GO:0071766 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- ccrud_RS01000 208a246314c7f45304bc80c28e5a3823 1146 Gene3D G3DSA:2.60.120.610 60 237 3.7E-60 T 14-09-2016 IPR027451 Arabinofuranosyltransferase, domain 1 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- ccrud_RS01000 208a246314c7f45304bc80c28e5a3823 1146 Pfam PF14896 EmbC C-terminal domain 753 1143 5.8E-154 T 14-09-2016 IPR032731 Arabinosyltransferase, C-terminal KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.- ccrud_RS07000 d26d93c8c7bb95331d5d6714015fed89 462 SUPERFAMILY SSF53300 272 457 7.31E-9 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS07000 d26d93c8c7bb95331d5d6714015fed89 462 Gene3D G3DSA:3.40.50.410 271 457 8.4E-7 T 14-09-2016 IPR002035 von Willebrand factor, type A ccrud_RS09050 e36cbab0ec757d33c1aa92ad6535f193 115 SUPERFAMILY SSF50891 1 114 1.14E-21 T 14-09-2016 IPR029000 Cyclophilin-like domain ccrud_RS04675 994621c921b93416941dad28fadc4a36 409 SUPERFAMILY SSF103473 1 400 5.23E-19 T 14-09-2016 IPR020846 Major facilitator superfamily domain ccrud_RS04675 994621c921b93416941dad28fadc4a36 409 PANTHER PTHR23526 7 401 1.1E-15 T 14-09-2016 ccrud_RS04675 994621c921b93416941dad28fadc4a36 409 Gene3D G3DSA:1.20.1250.20 236 401 7.2E-6 T 14-09-2016 ccrud_RS04345 44e8dd51f219ad7d74ce2f1cb19cf544 217 SMART SM00858 43 105 5.5E-8 T 14-09-2016 IPR013974 SAF domain ccrud_RS04345 44e8dd51f219ad7d74ce2f1cb19cf544 217 Pfam PF08666 SAF domain 44 99 7.5E-9 T 14-09-2016 IPR013974 SAF domain ccrud_RS04235 8aad9e8a3833a90c769a2d70ace0c080 169 SUPERFAMILY SSF46785 3 164 4.44E-23 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS04235 8aad9e8a3833a90c769a2d70ace0c080 169 Pfam PF03551 Transcriptional regulator PadR-like family 8 80 4.3E-8 T 14-09-2016 IPR005149 Transcription regulator PadR, N-terminal ccrud_RS04235 8aad9e8a3833a90c769a2d70ace0c080 169 Gene3D G3DSA:1.10.10.10 1 87 1.4E-16 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain ccrud_RS05075 88f471413e73ded8d15c6fc2d8f8b734 579 Pfam PF01740 STAS domain 450 553 6.4E-15 T 14-09-2016 IPR002645 STAS domain ccrud_RS05075 88f471413e73ded8d15c6fc2d8f8b734 579 TIGRFAM TIGR00815 sulP: sulfate permease 10 553 1.6E-124 T 14-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 ccrud_RS05075 88f471413e73ded8d15c6fc2d8f8b734 579 SUPERFAMILY SSF52091 449 557 2.16E-12 T 14-09-2016 IPR002645 STAS domain ccrud_RS05075 88f471413e73ded8d15c6fc2d8f8b734 579 Gene3D G3DSA:3.30.750.24 450 556 2.6E-13 T 14-09-2016 IPR002645 STAS domain ccrud_RS05075 88f471413e73ded8d15c6fc2d8f8b734 579 PANTHER PTHR11814 1 565 2.6E-159 T 14-09-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 ccrud_RS05075 88f471413e73ded8d15c6fc2d8f8b734 579 Pfam PF00916 Sulfate permease family 23 390 3.1E-91 T 14-09-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 ccrud_RS09820 2823d88887fdf6bfe88038bc7f3a8ec6 368 Pfam PF10979 Protein of unknown function (DUF2786) 129 167 1.5E-10 T 14-09-2016 IPR024498 Domain of unknown function DUF2786 ccrud_RS09820 2823d88887fdf6bfe88038bc7f3a8ec6 368 ProDom PD120223 SCO3432 GENE ML2604 GP79 GP77 CGL2230 MB0190 130 356 1.0E-87 T 14-09-2016 ccrud_RS08290 76ae5c5b35832941e223d7372851d2ea 378 Pfam PF13830 Domain of unknown function (DUF4192) 17 352 1.6E-56 T 14-09-2016 IPR025447 Protein of unknown function DUF4192 ccrud_RS05025 5bc432bab5129291c46c5085d4428bde 466 Pfam PF01594 Domain of unknown function DUF20 47 369 2.1E-56 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like ccrud_RS05025 5bc432bab5129291c46c5085d4428bde 466 PANTHER PTHR21716 41 371 4.7E-68 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like ccrud_RS13055 347bb0f38b82ad56e9aff6f8bc611529 352 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 13 320 1.4E-21 T 14-09-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD ccrud_RS09895 ba4c622b19db6b8dc44088f392055007 143 Pfam PF11253 Protein of unknown function (DUF3052) 16 138 5.3E-49 T 14-09-2016 IPR021412 Protein of unknown function DUF3052 ccrud_RS08500 df793b02b89b4dd72ae26fa539ba4e33 95 Pfam PF03795 YCII-related domain 3 89 7.3E-8 T 14-09-2016 IPR005545 YCII-related ccrud_RS08500 df793b02b89b4dd72ae26fa539ba4e33 95 Gene3D G3DSA:3.30.70.1060 1 91 1.6E-15 T 14-09-2016 ccrud_RS08500 df793b02b89b4dd72ae26fa539ba4e33 95 SUPERFAMILY SSF54909 1 91 1.45E-17 T 14-09-2016 IPR011008 Dimeric alpha-beta barrel ccrud_RS10620 85091013823e1224c364592933b5bd0a 310 PANTHER PTHR36838 1 310 6.7E-25 T 14-09-2016 ccrud_RS10620 85091013823e1224c364592933b5bd0a 310 Pfam PF03547 Membrane transport protein 162 302 1.6E-14 T 14-09-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 ccrud_RS10620 85091013823e1224c364592933b5bd0a 310 Pfam PF03547 Membrane transport protein 4 135 1.1E-11 T 14-09-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 ccrud_RS00165 514d77796a8fee0459f5ecd0efe9c071 441 PANTHER PTHR30474 42 441 2.3E-137 T 14-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 ccrud_RS00165 514d77796a8fee0459f5ecd0efe9c071 441 Pfam PF01098 Cell cycle protein 72 427 6.1E-79 T 14-09-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 ccrud_RS00165 514d77796a8fee0459f5ecd0efe9c071 441 PANTHER PTHR30474:SF3 42 441 2.3E-137 T 14-09-2016 ccrud_RS06195 e13ae890b272f42aafe49ad32f9f5cb2 157 Pfam PF11188 Protein of unknown function (DUF2975) 49 157 3.3E-16 T 14-09-2016 IPR021354 Protein of unknown function DUF2975 ccrud_RS13130 8108cd7c1f38cbdcf4a2fef5ba680af2 466 Pfam PF17173 Domain of unknown function (DUF5129) 58 349 7.9E-15 T 14-09-2016 IPR033435 Domain of unknown function DUF5129 ccrud_RS13390 157ca52d1a3ce36d7390ae0ee8a8238f 401 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 32 270 2.6E-39 T 14-09-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal ccrud_RS13390 157ca52d1a3ce36d7390ae0ee8a8238f 401 Pfam PF02096 60Kd inner membrane protein 32 270 2.3E-30 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 ccrud_RS13390 157ca52d1a3ce36d7390ae0ee8a8238f 401 PANTHER PTHR12428 3 146 4.8E-30 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 ccrud_RS13390 157ca52d1a3ce36d7390ae0ee8a8238f 401 PANTHER PTHR12428 333 382 4.8E-30 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 ccrud_RS13390 157ca52d1a3ce36d7390ae0ee8a8238f 401 PANTHER PTHR12428 185 315 4.8E-30 T 14-09-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 ccrud_RS01815 70e696ba6a62f2e801cb52fdc361bb64 364 Pfam PF06081 Aromatic acid exporter family member 1 23 159 1.1E-10 T 14-09-2016 IPR010343 Aromatic acid exporter family member 1 ccrud_RS01780 4269b97d3714ed180368a17090cf0cf4 188 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 56 181 3.7E-8 T 14-09-2016 IPR009936 Protein of unknown function DUF1468 ccrud_RS07520 faf57f06df2d54cb3ebaf5bb72b0af05 74 Pfam PF13396 Phospholipase_D-nuclease N-terminal 37 72 7.8E-6 T 14-09-2016 IPR027379 Cardiolipin synthase N-terminal ccrud_RS10330 a03795eeb4477d0237bdbd3174bd15ed 325 Pfam PF01758 Sodium Bile acid symporter family 45 222 1.4E-37 T 14-09-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 ccrud_RS10330 a03795eeb4477d0237bdbd3174bd15ed 325 PANTHER PTHR10361 1 309 2.5E-82 T 14-09-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 ccrud_RS05200 0d8b3bbb971c0b1273e1d171d5f8335e 201 PIRSF PIRSF037394 8 201 1.1E-72 T 14-09-2016 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted ccrud_RS05200 0d8b3bbb971c0b1273e1d171d5f8335e 201 Pfam PF09819 ABC-type cobalt transport system, permease component 19 139 1.1E-37 T 14-09-2016 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted ccrud_RS00715 a6444f8cd339bc02b4d822cd4e589b7c 553 PANTHER PTHR33361 27 551 5.4E-57 T 14-09-2016 ccrud_RS00715 a6444f8cd339bc02b4d822cd4e589b7c 553 Pfam PF05960 Bacterial protein of unknown function (DUF885) 30 551 2.3E-143 T 14-09-2016 IPR010281 Protein of unknown function DUF885 ccrud_RS00715 a6444f8cd339bc02b4d822cd4e589b7c 553 PANTHER PTHR33361:SF6 27 551 5.4E-57 T 14-09-2016 ccrud_RS04385 688340d4bdac7e00623c2cd4a344e393 223 Pfam PF13490 Putative zinc-finger 4 38 1.1E-10 T 14-09-2016 IPR027383 Putative zinc-finger ccrud_RS05480 8e40ffa0e70f1fac72b34dc71d036986 220 Pfam PF11575 FhuF 2Fe-2S C-terminal domain 198 217 2.4E-6 T 14-09-2016 IPR024726 Ferric iron reductase, C-terminal GO:0051537 ccrud_RS11115 acf13a421d17438d277bfc7021f99fbc 403 Pfam PF03734 L,D-transpeptidase catalytic domain 245 368 9.0E-19 T 14-09-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 ccrud_RS11115 acf13a421d17438d277bfc7021f99fbc 403 PANTHER PTHR30582:SF2 60 403 1.0E-80 T 14-09-2016 ccrud_RS11115 acf13a421d17438d277bfc7021f99fbc 403 Gene3D G3DSA:2.40.440.10 242 369 2.2E-20 T 14-09-2016 ccrud_RS11115 acf13a421d17438d277bfc7021f99fbc 403 PANTHER PTHR30582 60 403 1.0E-80 T 14-09-2016 ccrud_RS11115 acf13a421d17438d277bfc7021f99fbc 403 SUPERFAMILY SSF141523 241 368 1.07E-29 T 14-09-2016 ccrud_RS01555 a6f973c15ed6cb3e2913649f49f05be2 260 Pfam PF00482 Type II secretion system (T2SS), protein F 92 215 2.0E-12 T 14-09-2016 IPR018076 Type II secretion system F domain ccrud_RS08220 2d5e57e9fd39d1be1d37b3d2a52f7f28 97 Pfam PF13834 Domain of unknown function (DUF4193) 1 97 3.7E-34 T 14-09-2016 IPR025242 Protein of unknown function DUF4193 ccrud_RS00650 3afc17867a08d2ef4a46a8e1327da222 113 Gene3D G3DSA:1.10.260.40 32 92 4.8E-16 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS00650 3afc17867a08d2ef4a46a8e1327da222 113 Pfam PF01381 Helix-turn-helix 34 87 7.5E-13 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS00650 3afc17867a08d2ef4a46a8e1327da222 113 SUPERFAMILY SSF47413 31 95 7.24E-17 T 14-09-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 ccrud_RS00650 3afc17867a08d2ef4a46a8e1327da222 113 SMART SM00530 33 89 3.1E-13 T 14-09-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 ccrud_RS08250 bf16b338a697e5071bb0a2319ee08e0d 570 SMART SM00487 1 183 1.2E-9 T 14-09-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain ccrud_RS08250 bf16b338a697e5071bb0a2319ee08e0d 570 SUPERFAMILY SSF52540 4 162 2.54E-24 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08250 bf16b338a697e5071bb0a2319ee08e0d 570 Gene3D G3DSA:3.40.50.300 264 370 7.2E-6 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08250 bf16b338a697e5071bb0a2319ee08e0d 570 Gene3D G3DSA:3.40.50.300 3 161 3.5E-18 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08250 bf16b338a697e5071bb0a2319ee08e0d 570 Pfam PF04851 Type III restriction enzyme, res subunit 4 156 8.4E-15 T 14-09-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 ccrud_RS08250 bf16b338a697e5071bb0a2319ee08e0d 570 SUPERFAMILY SSF52540 249 368 2.13E-16 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS08250 bf16b338a697e5071bb0a2319ee08e0d 570 SUPERFAMILY SSF52540 117 190 2.13E-16 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS13600 e9e2134d8bf73fe4367a9e601392be03 194 Pfam PF04892 VanZ like family 14 146 2.7E-21 T 14-09-2016 IPR006976 VanZ-like ccrud_RS02935 e4b05450b86deb628130bdb1cea4b822 457 TIGRFAM TIGR03920 T7SS_EccD: type VII secretion integral membrane protein EccD 15 449 1.1E-93 T 14-09-2016 IPR006707 Type VII secretion system membrane protein EccD ccrud_RS04105 43f0b613a78990cd3dd60a83a9e42c7d 551 PANTHER PTHR11819:SF13 19 540 5.1E-216 T 14-09-2016 ccrud_RS04105 43f0b613a78990cd3dd60a83a9e42c7d 551 Pfam PF00474 Sodium:solute symporter family 50 469 2.1E-88 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS04105 43f0b613a78990cd3dd60a83a9e42c7d 551 PANTHER PTHR11819 19 540 5.1E-216 T 14-09-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 ccrud_RS02365 250b55af348d6de972acb728de2b4d18 137 Pfam PF07681 DoxX 9 91 1.2E-20 T 14-09-2016 IPR032808 DoxX family ccrud_RS02365 250b55af348d6de972acb728de2b4d18 137 PANTHER PTHR33452 1 137 3.0E-29 T 14-09-2016 ccrud_RS02735 a1971368f34fe695d0338bf4ef93f913 370 Pfam PF02361 Cobalt transport protein 10 214 1.7E-6 T 14-09-2016 IPR003339 ABC/ECF transporter, transmembrane component ccrud_RS12500 d81f56ee45bc3127b2e90eff2acd3b5f 405 Pfam PF03663 Glycosyl hydrolase family 76 49 326 1.6E-12 T 14-09-2016 IPR005198 Glycoside hydrolase, family 76 KEGG: 00052+3.2.1.10|KEGG: 00500+3.2.1.10 ccrud_RS12500 d81f56ee45bc3127b2e90eff2acd3b5f 405 Gene3D G3DSA:1.50.10.10 38 295 8.5E-8 T 14-09-2016 IPR012341 Six-hairpin glycosidase GO:0003824 ccrud_RS12500 d81f56ee45bc3127b2e90eff2acd3b5f 405 PIRSF PIRSF021505 1 397 1.1E-94 T 14-09-2016 IPR014512 Predicted O-glycosyl hydrolase ccrud_RS12500 d81f56ee45bc3127b2e90eff2acd3b5f 405 SUPERFAMILY SSF48208 27 228 1.56E-12 T 14-09-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 ccrud_RS03730 903562ad6fb1dece99faf75d49432248 370 SMART SM00507 262 315 5.9E-4 T 14-09-2016 IPR003615 HNH nuclease ccrud_RS11705 2702d060bb8883e4a104fd303a93077f 82 PANTHER PTHR11958 22 82 2.2E-19 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11705 2702d060bb8883e4a104fd303a93077f 82 Gene3D G3DSA:1.10.3860.10 19 81 3.6E-13 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11705 2702d060bb8883e4a104fd303a93077f 82 PANTHER PTHR11958:SF49 22 82 2.2E-19 T 14-09-2016 ccrud_RS11705 2702d060bb8883e4a104fd303a93077f 82 Pfam PF00375 Sodium:dicarboxylate symporter family 19 80 4.9E-15 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS11705 2702d060bb8883e4a104fd303a93077f 82 SUPERFAMILY SSF118215 12 81 5.62E-15 T 14-09-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 ccrud_RS01805 0cda3a581298c83a0fcb845bb7f0cb91 162 PANTHER PTHR31157 45 157 6.5E-13 T 14-09-2016 ccrud_RS01805 0cda3a581298c83a0fcb845bb7f0cb91 162 SUPERFAMILY SSF55797 52 158 3.27E-22 T 14-09-2016 IPR014044 CAP domain ccrud_RS01805 0cda3a581298c83a0fcb845bb7f0cb91 162 Gene3D G3DSA:3.40.33.10 52 155 5.8E-15 T 14-09-2016 IPR014044 CAP domain ccrud_RS01805 0cda3a581298c83a0fcb845bb7f0cb91 162 Pfam PF00188 Cysteine-rich secretory protein family 59 154 1.5E-14 T 14-09-2016 IPR014044 CAP domain ccrud_RS01375 fe978d0165119d79cb38bd5c248fb27e 106 Pfam PF03334 Na+/H+ antiporter subunit 11 95 7.6E-11 T 14-09-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 ccrud_RS04880 4918f34d958dc2c53ab716df7ed80a6c 172 SUPERFAMILY SSF52218 5 133 1.79E-8 T 14-09-2016 IPR029039 Flavoprotein-like domain ccrud_RS04880 4918f34d958dc2c53ab716df7ed80a6c 172 Pfam PF12724 Flavodoxin domain 5 137 4.5E-20 T 14-09-2016 IPR026816 Flavodoxin domain ccrud_RS04880 4918f34d958dc2c53ab716df7ed80a6c 172 Gene3D G3DSA:3.40.50.360 3 85 3.8E-5 T 14-09-2016 IPR029039 Flavoprotein-like domain ccrud_RS04795 8c558283ac284f777e939ba25b710b6d 118 Pfam PF11565 Alpha helical Porin B 17 118 4.8E-29 T 14-09-2016 IPR021114 Porin PorB/PorC ccrud_RS07940 ac0f5651fefce33e947d81e2b6ba0bf4 216 Gene3D G3DSA:3.40.50.300 41 200 6.8E-11 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS07940 ac0f5651fefce33e947d81e2b6ba0bf4 216 SUPERFAMILY SSF52540 41 200 4.87E-12 T 14-09-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase ccrud_RS02035 0c3681a49c4ec689edf2e565e1b439fd 101 Pfam PF10724 Protein of unknown function (DUF2516) 10 97 1.7E-21 T 14-09-2016 IPR019662 Protein of unknown function DUF2516 ccrud_RS06675 8cf6203ff206232d482c7f42b5624113 470 Pfam PF01757 Acyltransferase family 14 394 2.4E-51 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 ccrud_RS12565 536a1447005dba11481f79be6616baa5 148 Pfam PF12120 Rifampin ADP-ribosyl transferase 10 120 4.6E-41 T 14-09-2016 IPR021975 DNA/RNA tunnel of bacterial DNA dependent RNA polymerase ccrud_RS12180 340a2866c56818cd7c05585fd5939228 141 Pfam PF03994 Domain of Unknown Function (DUF350) 86 140 1.6E-9 T 14-09-2016 IPR007140 Protein of unknown function DUF350 ccrud_RS12180 340a2866c56818cd7c05585fd5939228 141 Pfam PF03994 Domain of Unknown Function (DUF350) 15 69 5.5E-12 T 14-09-2016 IPR007140 Protein of unknown function DUF350 ccrud_RS13215 f001575cbc7b0f036f17a7ded9ff9b48 510 TIGRFAM TIGR01167 LPXTG_anchor: LPXTG cell wall anchor domain 475 505 0.0015 T 14-09-2016 IPR019931 LPXTG cell wall anchor domain ccrud_RS13215 f001575cbc7b0f036f17a7ded9ff9b48 510 TIGRFAM TIGR04226 RrgB_K2N_iso_D2: fimbrial isopeptide formation D2 domain 198 324 1.8E-10 T 14-09-2016 IPR026466 Fimbrial isopeptide formation D2 domain ccrud_RS11075 bde69f35652522d87b404b435922a606 442 Pfam PF09861 Domain of unknown function (DUF2088) 46 205 5.1E-23 T 14-09-2016 IPR018657 Domain of unknown function DUF2088 ccrud_RS07865 c75d147eb316be26164a16f691fd115a 138 Pfam PF01478 Type IV leader peptidase family 6 104 2.9E-13 T 14-09-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 ccrud_RS05285 a45144d664f02b0234af6d02e4515fad 401 PANTHER PTHR37814 1 368 9.4E-77 T 14-09-2016 ccrud_RS05285 a45144d664f02b0234af6d02e4515fad 401 PANTHER PTHR37814:SF1 1 368 9.4E-77 T 14-09-2016 ccrud_RS10190 8001f3826b47aba940a227070ecf16ee 189 Pfam PF12079 Protein of unknown function (DUF3558) 14 183 2.3E-19 T 14-09-2016 IPR024520 Protein of unknown function DUF3558 ccrud_RS13035 da4e859ed38aaea8957aafd3a541520a 336 Pfam PF03595 Voltage-dependent anion channel 21 320 1.4E-32 T 14-09-2016 IPR004695 Voltage-dependent anion channel GO:0016021|GO:0055085 ccrud_RS08340 1818eac9c540869e61d19d48b7bdfc6b 321 Gene3D G3DSA:3.40.1190.20 31 312 8.2E-25 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS08340 1818eac9c540869e61d19d48b7bdfc6b 321 SUPERFAMILY SSF53613 1 312 2.07E-18 T 14-09-2016 IPR029056 Ribokinase-like ccrud_RS13380 9563756511fcbbadca377e4bd783866e 268 Pfam PF07751 Abi-like protein 1 180 3.0E-39 T 14-09-2016 IPR011664 Abortive infection system protein AbiD/AbiF-like ccrud_RS09755 3c964686f511f641fd6f4be20c990e50 157 PIRSF PIRSF021697 1 157 2.0E-63 T 14-09-2016 IPR016795 Uncharacterised conserved protein UCP021697, membrane ccrud_RS09755 3c964686f511f641fd6f4be20c990e50 157 Pfam PF06271 RDD family 44 150 2.9E-7 T 14-09-2016 IPR010432 RDD ccrud_RS13850 f271445e0434bb9c60c21e57817a8dc6 128 Pfam PF06993 Protein of unknown function (DUF1304) 10 122 3.8E-30 T 14-09-2016 IPR009732 Protein of unknown function DUF1304 ccrud_RS07530 61a3e7961f4feaa93ed01a3a30b4c543 158 PIRSF PIRSF010260 1 158 1.3E-38 T 14-09-2016 IPR014457 Uncharacterised conserved protein UCP010260 ccrud_RS07530 61a3e7961f4feaa93ed01a3a30b4c543 158 Pfam PF09348 Domain of unknown function (DUF1990) 23 154 2.0E-31 T 14-09-2016 IPR018960 Domain of unknown function DUF1990 ccrud_RS08185 2f71f6c96c95624c738e524502390fad 205 Pfam PF11452 Protein of unknown function (DUF3000) 20 201 6.4E-75 T 14-09-2016 IPR021555 Protein of unknown function DUF3000 ccrud_RS11670 99a68815c865ad46fb62e23b8f78bec2 254 PANTHER PTHR20855 52 250 2.3E-26 T 14-09-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 ccrud_RS11670 99a68815c865ad46fb62e23b8f78bec2 254 Pfam PF03006 Haemolysin-III related 45 245 1.4E-35 T 14-09-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 ccrud_RS11670 99a68815c865ad46fb62e23b8f78bec2 254 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 45 252 1.1E-54 T 14-09-2016 IPR005744 Hly-III GO:0016021|GO:0019835 ccrud_RS11670 99a68815c865ad46fb62e23b8f78bec2 254 PANTHER PTHR20855:SF3 52 250 2.3E-26 T 14-09-2016 IPR005744 Hly-III GO:0016021|GO:0019835 ccrud_RS07185 0fc460b3e9cd6ea31dd1a4e136deeada 195 Pfam PF04186 FxsA cytoplasmic membrane protein 5 113 8.7E-20 T 14-09-2016 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 ccrud_RS03925 52d6a8fc72c70d665768c56a4e385093 458 Pfam PF13701 Transposase DDE domain group 1 2 450 1.4E-25 T 14-09-2016 IPR025668 Transposase DDE domain ccrud_RS05380 8da5828e4367c51a7f109f734f75795b 55 Pfam PF11314 Protein of unknown function (DUF3117) 4 52 2.6E-28 T 14-09-2016 IPR021465 Protein of unknown function DUF3117 ccrud_RS09420 508a4c1fe5542d812504ea187b6a5348 95 Pfam PF02325 YGGT family 10 91 5.9E-15 T 14-09-2016 IPR003425 CCB3/YggT GO:0016020 ccrud_RS09530 e2bd87d43c104031dbf413d802c33b23 501 TIGRFAM TIGR03459 crt_membr: carotene biosynthesis associated membrane protein 10 484 2.4E-216 T 14-09-2016 IPR017822 Carotene biosynthesis-associated membrane protein, type-1 KEGG: 00051+2.4.1.-|KEGG: 00512+2.4.1.-|KEGG: 00513+2.4.1.-|KEGG: 00514+2.4.1.-|KEGG: 00522+2.4.1.-|KEGG: 00533+2.4.1.-|KEGG: 00540+2.4.1.-|KEGG: 00550+2.4.1.-|KEGG: 00561+2.4.1.-|KEGG: 00563+2.4.1.-|KEGG: 00600+2.4.1.-|KEGG: 00601+2.4.1.-|KEGG: 00603+2.4.1.-|KEGG: 00604+2.4.1.-|KEGG: 00906+2.4.1.-|KEGG: 00908+2.4.1.-|KEGG: 00941+2.4.1.-|KEGG: 00942+2.4.1.-|KEGG: 00944+2.4.1.-|KEGG: 00945+2.4.1.-|KEGG: 00965+2.4.1.- ccrud_RS02065 fe5fd402894bc234fbef2455b0fbcc1c 279 PANTHER PTHR37044 149 272 2.7E-13 T 14-09-2016 ccrud_RS02065 fe5fd402894bc234fbef2455b0fbcc1c 279 SUPERFAMILY SSF52980 164 253 2.63E-8 T 14-09-2016 IPR011335 Restriction endonuclease type II-like ccrud_RS01005 edff50defdf73b3d1b2221eb9845ae54 677 Pfam PF12249 Arabinofuranosyltransferase A C terminal 497 674 3.1E-72 T 14-09-2016 IPR020959 Arabinofuranosyltransferase AftA, C-terminal GO:0005886|GO:0016021|GO:0016757|GO:0044038 ccrud_RS01005 edff50defdf73b3d1b2221eb9845ae54 677 Pfam PF12250 Arabinofuranosyltransferase N terminal 45 489 2.0E-167 T 14-09-2016 IPR020963 Arabinofuranosyltransferase AftA, N-terminal GO:0005886|GO:0016021|GO:0016757|GO:0044038 ccrud_RS10255 0d3eece1c4bbd804950e5c972acef546 311 Pfam PF03547 Membrane transport protein 10 150 1.5E-13 T 14-09-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 ccrud_RS10255 0d3eece1c4bbd804950e5c972acef546 311 PANTHER PTHR36838 1 310 1.2E-28 T 14-09-2016 ccrud_RS02085 6017ef41f8b3bc8ff7b8e76f2a0590fc 271 SUPERFAMILY SSF53335 53 181 6.97E-8 T 14-09-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase ccrud_RS09865 e5345d77df3c1b0c771dbf73b3215f4f 239 Pfam PF02591 C4-type zinc ribbon domain 201 234 2.0E-9 T 14-09-2016 IPR003743 C4-type zinc ribbon domain ccrud_RS12695 a657f910b14abc07a1ee899fc2ef77e7 188 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 40 180 3.0E-20 T 14-09-2016 IPR009936 Protein of unknown function DUF1468 ccrud_RS07860 4fc8b7473a401adcae5f4e5b78b4eef6 332 Pfam PF07751 Abi-like protein 8 96 1.8E-22 T 14-09-2016 IPR011664 Abortive infection system protein AbiD/AbiF-like ccrud_RS11415 0bf6b2c5db550f6ed131d1016f7eaf49 96 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 7 96 13.735 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 ccrud_RS11415 0bf6b2c5db550f6ed131d1016f7eaf49 96 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 9 73 7.2E-12 T 14-09-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 ccrud_RS02305 f3406e505796518818c585348328de6d 281 PANTHER PTHR30151 37 281 4.6E-64 T 14-09-2016 ccrud_RS02305 f3406e505796518818c585348328de6d 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 100 277 2.4E-27 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS02305 f3406e505796518818c585348328de6d 281 Gene3D G3DSA:1.10.3720.10 81 275 9.8E-22 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS02305 f3406e505796518818c585348328de6d 281 SUPERFAMILY SSF161098 80 262 1.3E-30 T 14-09-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 ccrud_RS01405 d65f702cb27e662c7c473c4a36e58868 488 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 82 108 8.6E-6 T 14-09-2016 IPR023908 xxxLxxG heptad repeat ccrud_RS01405 d65f702cb27e662c7c473c4a36e58868 488 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 75 101 5.4E-6 T 14-09-2016 IPR023908 xxxLxxG heptad repeat ccrud_RS01405 d65f702cb27e662c7c473c4a36e58868 488 TIGRFAM TIGR03057 xxxLxxG_by_4: X-X-X-Leu-X-X-Gly heptad repeats 109 136 1.2E-6 T 14-09-2016 IPR023908 xxxLxxG heptad repeat ccrud_RS04690 2ca2ee9da620e0cc10b9383247a89476 278 Pfam PF12698 ABC-2 family transporter protein 66 268 2.5E-13 T 14-09-2016 ccrud_RS13605 06fe08df6bd28483e37551c0583b5aee 198 Pfam PF04892 VanZ like family 40 166 2.1E-22 T 14-09-2016 IPR006976 VanZ-like ccrud_RS12615 501ea249151129c9fb2dc278e235e90b 481 Pfam PF01594 Domain of unknown function DUF20 97 420 2.4E-65 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like ccrud_RS12615 501ea249151129c9fb2dc278e235e90b 481 PANTHER PTHR21716 91 419 5.3E-74 T 14-09-2016 IPR002549 Transmembrane protein TqsA-like ccrud_RS06915 a9044516b33a1d9cc2d8d981495ca771 222 Pfam PF13599 Pentapeptide repeats (9 copies) 94 179 4.0E-7 T 14-09-2016 IPR001646 Pentapeptide repeat ccrud_RS06915 a9044516b33a1d9cc2d8d981495ca771 222 SUPERFAMILY SSF141571 33 190 1.57E-26 T 14-09-2016 ccrud_RS04585 40f0c30f6b7c8572568969a5a319f9fa 171 Pfam PF09965 Uncharacterized protein conserved in bacteria (DUF2199) 7 150 3.7E-17 T 14-09-2016 IPR018697 Protein of unknown function DUF2199 ccrud_RS12195 119941d39be9175e43fc00d01c93e49a 202 Pfam PF13785 Domain of unknown function (DUF4178) 57 191 2.1E-31 T 14-09-2016 IPR025235 Domain of unknown function DUF4178 ccrud_RS09630 77a12cc7eb9b0d94b2f71007c6320cab 143 PIRSF PIRSF017385 1 143 4.0E-45 T 14-09-2016 IPR021050 Cytochrome c oxidase subunit IV, actinobacteria GO:0004129|GO:0016021|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 ccrud_RS09630 77a12cc7eb9b0d94b2f71007c6320cab 143 Pfam PF12270 Cytochrome c oxidase subunit IV 1 136 1.3E-34 T 14-09-2016 IPR021050 Cytochrome c oxidase subunit IV, actinobacteria GO:0004129|GO:0016021|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279 ccrud_RS04475 f750aeef33e6f2ac5929e48f48d535dc 140 Pfam PF01610 Transposase 1 125 4.2E-26 T 14-09-2016 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain ccrud_RS04210 e02d7485526b4174a1e98b59a2b43f96 391 SMART SM00507 275 327 7.3E-5 T 14-09-2016 IPR003615 HNH nuclease ccrud_RS06595 c04a9336ae070fb18a3b20aa8d7174a1 304 Pfam PF07681 DoxX 5 96 3.7E-9 T 14-09-2016 IPR032808 DoxX family ccrud_RS01920 e5a40dbf3eb32523d7df801d444bbd9e 408 Pfam PF04230 Polysaccharide pyruvyl transferase 36 340 1.7E-30 T 14-09-2016 IPR007345 Polysaccharide pyruvyl transferase ccrud_RS12295 fedcd9af13a1b1233ef7bc7321974998 1197 Pfam PF13809 Tubulin like 5 386 8.7E-61 T 14-09-2016 IPR025904 Tubulin-like ccrud_RS08530 c223f79257a8e420cc9cc706f0453435 204 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 27 196 5.5E-21 T 14-09-2016 IPR009936 Protein of unknown function DUF1468 ccrud_RS03865 82ece820affca3df88b96fdb4e2c6582 134 Pfam PF05154 TM2 domain 50 99 3.2E-13 T 14-09-2016 IPR007829 TM2 domain ccrud_RS07815 544aae1f98cf5c6632e3f93b1761c983 152 Pfam PF10722 Putative bacterial sensory transduction regulator 18 144 1.2E-9 T 14-09-2016 IPR019660 Putative sensory transduction regulator YbjN ccrud_RS02385 025a52a0e8b0bde5097edbe40840bebd 105 Pfam PF11829 Protein of unknown function (DUF3349) 9 103 1.5E-29 T 14-09-2016 IPR021784 Protein of unknown function DUF3349 ccrud_RS04855 7c2d0da1390eb575eba2eea04d6b79d8 147 Pfam PF14155 Domain of unknown function (DUF4307) 26 135 2.9E-34 T 14-09-2016 IPR025443 Protein of unknown function DUF4307 ccrud_RS12360 9fe25325ec9d96090e0f5f38e17925e8 215 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 124 212 4.1E-8 T 14-09-2016 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain ccrud_RS00585 e8bc99d07f233bd830d230fb768e52e5 105 Pfam PF02656 Domain of unknown function (DUF202) 6 69 7.9E-13 T 14-09-2016 IPR003807 Domain of unknown function DUF202 ccrud_RS00585 e8bc99d07f233bd830d230fb768e52e5 105 ProDom PD277113 MEMBRANE INNER YIDG TRANSMEMBRANE STY3975 RV2273/MT2334 MB2296 2 105 2.0E-44 T 14-09-2016 IPR020264 Uncharacterised protein family YidG ccrud_RS08215 d1d61bc0db396de8dcd9d8c8fc1c50c8 183 Pfam PF11292 Protein of unknown function (DUF3093) 26 169 6.2E-48 T 14-09-2016 IPR021443 Protein of unknown function DUF3093 ccrud_RS12340 0a92edd1b8a38ca36d85da8c80fcbb20 91 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 36 85 2.9E-12 T 14-09-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 ccrud_RS05030 3661419c56a42a432d945fb0945beb09 60 Pfam PF16951 Putative methionine and alanine importer, small subunit 1 58 1.3E-36 T 14-09-2016 IPR031596 Putative methionine and alanine importer, small subunit ccrud_RS07480 f7e574834a26b2354c33d5f580167d71 261 ProDom PD040491 SCO1799 RV1486C/MT1533 MB1522C CGL1536 ML1804 MAV321 5 257 6.0E-122 T 14-09-2016 ccrud_RS13225 206528710f377a52b82bb9e50d16ab7d 381 TIGRFAM TIGR04226 RrgB_K2N_iso_D2: fimbrial isopeptide formation D2 domain 133 239 6.6E-10 T 14-09-2016 IPR026466 Fimbrial isopeptide formation D2 domain ccrud_RS02130 21e951807cd4ebb32130ab0a822c6cc2 292 SUPERFAMILY SSF52980 173 260 1.45E-9 T 14-09-2016 IPR011335 Restriction endonuclease type II-like ccrud_RS04025 b93bbf9e56e37ab9849ab22dfb696e85 733 Pfam PF13625 Helicase conserved C-terminal domain 465 575 1.3E-32 T 14-09-2016 IPR032830 Helicase XPB/Ssl2, N-terminal domain ccrud_RS01040 3d893e5c17c2e6923ebb38f178702439 132 Pfam PF04138 GtrA-like protein 9 129 7.5E-20 T 14-09-2016 IPR007267 GtrA-like protein GO:0000271|GO:0006810|GO:0016021 ccrud_RS00540 691c671975155b10d351da00942b4f94 925 Gene3D G3DSA:1.25.40.10 727 920 2.4E-7 T 14-09-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 ccrud_RS08255 2f4942ad160343f142e21c37ff80123b 79 Pfam PF11238 Protein of unknown function (DUF3039) 21 76 1.5E-26 T 14-09-2016 IPR021400 Protein of unknown function DUF3039 ccrud_RS13000 feb6446d3771242d33c2e5644bed7ddc 273 Pfam PF11271 Protein of unknown function (DUF3068) 5 253 1.0E-27 T 14-09-2016 IPR021424 Protein of unknown function DUF3068 ccrud_RS08800 e2c2b744760aa3ab93f8ba047d12c9bf 87 Pfam PF06305 Protein of unknown function (DUF1049) 32 87 4.3E-11 T 14-09-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 ccrud_RS12690 0a75d6a35cc04aa51fd4a6f92e178b22 510 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 443 1.1E-131 T 14-09-2016 IPR002823 Protein of unknown function DUF112, transmembrane ccrud_RS12690 0a75d6a35cc04aa51fd4a6f92e178b22 510 PANTHER PTHR35342:SF3 2 508 2.5E-207 T 14-09-2016 ccrud_RS12690 0a75d6a35cc04aa51fd4a6f92e178b22 510 PANTHER PTHR35342 2 508 2.5E-207 T 14-09-2016 ccrud_RS14220 389e0a916d0fb759d86ef5dd3d83f8af 121 Pfam PF09359 VTC domain 10 121 3.4E-19 T 14-09-2016 IPR018966 VTC domain ccrud_RS11300 f0252fcde84bbf0615d568d4801e0c8c 179 Pfam PF09438 Domain of unknown function (DUF2017) 11 177 7.7E-49 T 14-09-2016 IPR018561 Domain of unknown function DUF2017 ccrud_RS09550 daa14bf1bb3b7f07047429f2abdcb28b 440 Pfam PF09594 Protein of unknown function (DUF2029) 97 345 1.7E-49 T 14-09-2016 IPR018584 Glycosyltransferase family 87 GO:0016758 ccrud_RS02545 2952c79e72f7eab6ffc8fb19483b0145 324 Pfam PF11271 Protein of unknown function (DUF3068) 8 310 2.5E-70 T 14-09-2016 IPR021424 Protein of unknown function DUF3068 ccrud_RS02520 9d38eb4ad73bc9684c99f73c27703ae1 203 Pfam PF04402 Protein of unknown function (DUF541) 8 198 3.4E-14 T 14-09-2016 IPR007497 Protein of unknown function DUF541 ccrud_RS00555 3332153e4ff5009fac4a280f7418fda8 181 Pfam PF03413 Peptidase propeptide and YPEB domain 129 167 0.0053 T 14-09-2016 IPR025711 PepSY domain ccrud_RS06795 7f42adb2bd63397732bbfcc7e2140c75 321 Pfam PF11382 Copper transport outer membrane protein, MctB 9 310 5.1E-77 T 14-09-2016 IPR021522 Copper transporter MctB GO:0006810 ccrud_RS12315 bb44b680a309ffaddbbbe8286befbaa1 186 SUPERFAMILY SSF110921 110 183 5.49E-6 T 14-09-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 ccrud_RS00815 93d720d223158c41bc58d2c6c44ef628 329 Pfam PF13367 Protease prsW family 75 264 1.1E-43 T 14-09-2016 IPR026898 Protease PrsW GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- ccrud_RS08410 c5ade20a60fa0bcb1f6806acecc9bd14 455 Pfam PF03993 Domain of Unknown Function (DUF349) 143 215 2.9E-12 T 14-09-2016 IPR007139 Protein of unknown function DUF349 ccrud_RS08410 c5ade20a60fa0bcb1f6806acecc9bd14 455 Pfam PF03993 Domain of Unknown Function (DUF349) 219 292 1.8E-20 T 14-09-2016 IPR007139 Protein of unknown function DUF349 ccrud_RS08410 c5ade20a60fa0bcb1f6806acecc9bd14 455 Pfam PF03993 Domain of Unknown Function (DUF349) 296 369 5.3E-18 T 14-09-2016 IPR007139 Protein of unknown function DUF349 ccrud_RS04225 1245d78cdb1f6993ca82bcbbd91d0f17 743 Pfam PF02687 FtsX-like permease family 215 328 6.5E-9 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS04225 1245d78cdb1f6993ca82bcbbd91d0f17 743 Pfam PF02687 FtsX-like permease family 620 735 5.1E-15 T 14-09-2016 IPR003838 ABC transporter permease protein domain GO:0016020 ccrud_RS04225 1245d78cdb1f6993ca82bcbbd91d0f17 743 PANTHER PTHR30489 109 336 8.4E-15 T 14-09-2016 ccrud_RS01940 9788e46b2531a88e0629855b75e10f10 201 Pfam PF01757 Acyltransferase family 16 173 2.1E-8 T 14-09-2016 IPR002656 Acyltransferase 3 GO:0016747 ccrud_RS11310 580994adbc110f8b44812afb0f5f78ec 181 SUPERFAMILY SSF55797 60 171 3.14E-9 T 14-09-2016 IPR014044 CAP domain ccrud_RS06520 8be3f4dbc3475a52294baa3be69c3983 269 Pfam PF06889 Protein of unknown function (DUF1266) 101 266 9.6E-35 T 14-09-2016 IPR009677 Protein of unknown function DUF1266 ccrud_RS12930 f14157a1cbe70b0a4daac85712d976d7 451 Pfam PF04434 SWIM zinc finger 411 439 6.8E-4 T 14-09-2016 IPR007527 Zinc finger, SWIM-type GO:0008270 ccrud_RS10525 7bf200b456f04249d24f73b1b139b2f5 245 Gene3D G3DSA:1.10.10.10 173 242 7.4E-5 T 14-09-2016 IPR011991 Winged helix-turn-helix DNA-binding domain