locus-tag class description RR42_RS00005 PF11638 DnaA N-terminal domain RR42_RS00005 PF00308 Bacterial dnaA protein RR42_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix RR42_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RR42_RS00010 PF02767 DNA polymerase III beta subunit, central domain RR42_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RR42_RS00015 PF00204 DNA gyrase B RR42_RS00015 PF18053 DNA gyrase B subunit insert domain RR42_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS00015 PF01751 Toprim domain RR42_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus RR42_RS00025 PF07728 AAA domain (dynein-related subfamily) RR42_RS00025 PF12102 Domain of unknown function (DUF3578) RR42_RS00035 PF18053 DNA gyrase B subunit insert domain RR42_RS00035 PF01751 Toprim domain RR42_RS00035 PF00986 DNA gyrase B subunit, carboxyl terminus RR42_RS00035 PF00204 DNA gyrase B RR42_RS00035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS00040 PF02796 Helix-turn-helix domain of resolvase RR42_RS00040 PF00239 Resolvase, N terminal domain RR42_RS00055 PF10544 T5orf172 domain RR42_RS00130 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS00130 PF03707 Bacterial signalling protein N terminal repeat RR42_RS00130 PF00563 EAL domain RR42_RS00135 PF05860 haemagglutination activity domain RR42_RS00135 PF13332 Hemagglutinin repeat RR42_RS00135 PF13018 Extended Signal Peptide of Type V secretion system RR42_RS00135 PF04829 Pre-toxin domain with VENN motif RR42_RS00140 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RR42_RS00140 PF17287 POTRA domain RR42_RS00140 PF08479 POTRA domain, ShlB-type RR42_RS00150 PF13332 Hemagglutinin repeat RR42_RS00150 PF13018 Extended Signal Peptide of Type V secretion system RR42_RS00150 PF04829 Pre-toxin domain with VENN motif RR42_RS00150 PF05860 haemagglutination activity domain RR42_RS00170 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RR42_RS00195 PF02653 Branched-chain amino acid transport system / permease component RR42_RS00200 PF02653 Branched-chain amino acid transport system / permease component RR42_RS00200 PF11862 Domain of unknown function (DUF3382) RR42_RS00205 PF00005 ABC transporter RR42_RS00205 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS00210 PF00005 ABC transporter RR42_RS00215 PF01425 Amidase RR42_RS00220 PF07687 Peptidase dimerisation domain RR42_RS00220 PF01546 Peptidase family M20/M25/M40 RR42_RS00225 PF01381 Helix-turn-helix RR42_RS00225 PF08671 Anti-repressor SinI RR42_RS00230 PF03747 ADP-ribosylglycohydrolase RR42_RS00235 PF04286 Protein of unknown function (DUF445) RR42_RS00245 PF07171 MlrC C-terminus RR42_RS00245 PF07364 Metallopeptidase family M81 RR42_RS00250 PF07729 FCD domain RR42_RS00250 PF00392 Bacterial regulatory proteins, gntR family RR42_RS00255 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS00260 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS00265 PF00005 ABC transporter RR42_RS00270 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS00275 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RR42_RS00275 PF08666 SAF domain RR42_RS00280 PF00255 Glutathione peroxidase RR42_RS00295 PF00271 Helicase conserved C-terminal domain RR42_RS00295 PF00270 DEAD/DEAH box helicase RR42_RS00295 PF03880 DbpA RNA binding domain RR42_RS00320 PF00571 CBS domain RR42_RS00325 PF07690 Major Facilitator Superfamily RR42_RS00330 PF00255 Glutathione peroxidase RR42_RS00335 PF01613 Flavin reductase like domain RR42_RS00335 PF00258 Flavodoxin RR42_RS00340 PF00043 Glutathione S-transferase, C-terminal domain RR42_RS00340 PF02798 Glutathione S-transferase, N-terminal domain RR42_RS00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS00350 PF03466 LysR substrate binding domain RR42_RS00360 PF01177 Asp/Glu/Hydantoin racemase RR42_RS00365 PF01979 Amidohydrolase family RR42_RS00365 PF00449 Urease alpha-subunit, N-terminal domain RR42_RS00375 PF07690 Major Facilitator Superfamily RR42_RS00380 PF07729 FCD domain RR42_RS00380 PF00392 Bacterial regulatory proteins, gntR family RR42_RS00385 PF01557 Fumarylacetoacetate (FAA) hydrolase family RR42_RS00390 PF01546 Peptidase family M20/M25/M40 RR42_RS00390 PF07687 Peptidase dimerisation domain RR42_RS00395 PF12833 Helix-turn-helix domain RR42_RS00395 PF02311 AraC-like ligand binding domain RR42_RS00400 PF07690 Major Facilitator Superfamily RR42_RS00405 PF01546 Peptidase family M20/M25/M40 RR42_RS00405 PF07687 Peptidase dimerisation domain RR42_RS00410 PF01047 MarR family RR42_RS00415 PF00892 EamA-like transporter family RR42_RS00425 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS00430 PF00072 Response regulator receiver domain RR42_RS00430 PF00486 Transcriptional regulatory protein, C terminal RR42_RS00435 PF00486 Transcriptional regulatory protein, C terminal RR42_RS00435 PF00072 Response regulator receiver domain RR42_RS00445 PF13609 Gram-negative porin RR42_RS00450 PF03776 Septum formation topological specificity factor MinE RR42_RS00455 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RR42_RS00460 PF03775 Septum formation inhibitor MinC, C-terminal domain RR42_RS00460 PF05209 Septum formation inhibitor MinC, N-terminal domain RR42_RS00465 PF01544 CorA-like Mg2+ transporter protein RR42_RS00480 PF03814 Potassium-transporting ATPase A subunit RR42_RS00490 PF02669 K+-transporting ATPase, c chain RR42_RS00495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS00495 PF13492 GAF domain RR42_RS00495 PF13493 Domain of unknown function (DUF4118) RR42_RS00495 PF02702 Osmosensitive K+ channel His kinase sensor domain RR42_RS00495 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS00500 PF00486 Transcriptional regulatory protein, C terminal RR42_RS00500 PF00072 Response regulator receiver domain RR42_RS00505 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS00505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS00510 PF00486 Transcriptional regulatory protein, C terminal RR42_RS00510 PF00072 Response regulator receiver domain RR42_RS00515 PF16347 Domain of unknown function (DUF4976) RR42_RS00515 PF00884 Sulfatase RR42_RS00520 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS00540 PF14403 Circularly permuted ATP-grasp type 2 RR42_RS00540 PF04168 A predicted alpha-helical domain with a conserved ER motif. RR42_RS00560 PF01098 Cell cycle protein RR42_RS00565 PF00905 Penicillin binding protein transpeptidase domain RR42_RS00565 PF03717 Penicillin-binding Protein dimerisation domain RR42_RS00575 PF04085 rod shape-determining protein MreC RR42_RS00585 PF02686 Glu-tRNAGln amidotransferase C subunit RR42_RS00590 PF01425 Amidase RR42_RS00605 PF02934 GatB/GatE catalytic domain RR42_RS00605 PF02637 GatB domain RR42_RS00615 PF00589 Phage integrase family RR42_RS00615 PF02899 Phage integrase, N-terminal SAM-like domain RR42_RS00620 PF03466 LysR substrate binding domain RR42_RS00620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS00630 PF03099 Biotin/lipoate A/B protein ligase family RR42_RS00635 PF04055 Radical SAM superfamily RR42_RS00635 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RR42_RS00640 PF02682 Carboxyltransferase domain, subdomain C and D RR42_RS00645 PF02626 Carboxyltransferase domain, subdomain A and B RR42_RS00650 PF03746 LamB/YcsF family RR42_RS00665 PF01470 Pyroglutamyl peptidase RR42_RS00685 PF09383 NIL domain RR42_RS00685 PF00005 ABC transporter RR42_RS00690 PF02405 Permease MlaE RR42_RS00695 PF03099 Biotin/lipoate A/B protein ligase family RR42_RS00695 PF08279 HTH domain RR42_RS00695 PF02237 Biotin protein ligase C terminal domain RR42_RS00700 PF03309 Type III pantothenate kinase RR42_RS00710 PF01467 Cytidylyltransferase-like RR42_RS00730 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS00755 PF00561 alpha/beta hydrolase fold RR42_RS00760 PF12091 Protein of unknown function (DUF3567) RR42_RS00770 PF02574 Homocysteine S-methyltransferase RR42_RS00770 PF00809 Pterin binding enzyme RR42_RS00770 PF02607 B12 binding domain RR42_RS00770 PF02310 B12 binding domain RR42_RS00770 PF02965 Vitamin B12 dependent methionine synthase, activation domain RR42_RS00775 PF02310 B12 binding domain RR42_RS00775 PF02965 Vitamin B12 dependent methionine synthase, activation domain RR42_RS00775 PF00809 Pterin binding enzyme RR42_RS00775 PF02574 Homocysteine S-methyltransferase RR42_RS00775 PF02607 B12 binding domain RR42_RS00785 PF00196 Bacterial regulatory proteins, luxR family RR42_RS00785 PF00072 Response regulator receiver domain RR42_RS00790 PF01339 CheB methylesterase RR42_RS00790 PF00072 Response regulator receiver domain RR42_RS00800 PF07730 Histidine kinase RR42_RS00800 PF17200 Single Cache domain 2 RR42_RS00825 PF03485 Arginyl tRNA synthetase N terminal domain RR42_RS00825 PF00750 tRNA synthetases class I (R) RR42_RS00825 PF05746 DALR anticodon binding domain RR42_RS00835 PF13462 Thioredoxin RR42_RS00840 PF00106 short chain dehydrogenase RR42_RS00845 PF01497 Periplasmic binding protein RR42_RS00860 PF13411 MerR HTH family regulatory protein RR42_RS00870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS00870 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS00870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS00875 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) RR42_RS00880 PF00484 Carbonic anhydrase RR42_RS00885 PF00108 Thiolase, N-terminal domain RR42_RS00885 PF02803 Thiolase, C-terminal domain RR42_RS00895 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS00895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS00895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS00910 PF02810 SEC-C motif RR42_RS00915 PF02798 Glutathione S-transferase, N-terminal domain RR42_RS00915 PF14497 Glutathione S-transferase, C-terminal domain RR42_RS00925 PF00202 Aminotransferase class-III RR42_RS00930 PF00155 Aminotransferase class I and II RR42_RS00940 PF04055 Radical SAM superfamily RR42_RS00940 PF06968 Biotin and Thiamin Synthesis associated domain RR42_RS00945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR42_RS00945 PF02785 Biotin carboxylase C-terminal domain RR42_RS00945 PF00289 Biotin carboxylase, N-terminal domain RR42_RS00945 PF00364 Biotin-requiring enzyme RR42_RS00945 PF18140 Propionyl-coenzyme A carboxylase BT domain RR42_RS00950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR42_RS00955 PF00682 HMGL-like RR42_RS00970 PF01323 DSBA-like thioredoxin domain RR42_RS00975 PF16123 Hydroxyacylglutathione hydrolase C-terminus RR42_RS00975 PF00753 Metallo-beta-lactamase superfamily RR42_RS00990 PF07702 UTRA domain RR42_RS00990 PF00392 Bacterial regulatory proteins, gntR family RR42_RS00995 PF00939 Sodium:sulfate symporter transmembrane region RR42_RS01005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR42_RS01015 PF00593 TonB dependent receptor RR42_RS01015 PF07715 TonB-dependent Receptor Plug Domain RR42_RS01025 PF02492 CobW/HypB/UreG, nucleotide-binding domain RR42_RS01025 PF07683 Cobalamin synthesis protein cobW C-terminal domain RR42_RS01030 PF01258 Prokaryotic dksA/traR C4-type zinc finger RR42_RS01040 PF02492 CobW/HypB/UreG, nucleotide-binding domain RR42_RS01040 PF07683 Cobalamin synthesis protein cobW C-terminal domain RR42_RS01050 PF00561 alpha/beta hydrolase fold RR42_RS01055 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS01060 PF00227 Proteasome subunit RR42_RS01065 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS01065 PF07724 AAA domain (Cdc48 subfamily) RR42_RS01085 PF00072 Response regulator receiver domain RR42_RS01095 PF04314 Copper chaperone PCu(A)C RR42_RS01100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS01100 PF03466 LysR substrate binding domain RR42_RS01120 PF08281 Sigma-70, region 4 RR42_RS01120 PF04542 Sigma-70 region 2 RR42_RS01125 PF00696 Amino acid kinase family RR42_RS01135 PF00440 Bacterial regulatory proteins, tetR family RR42_RS01145 PF06123 Inner membrane protein CreD RR42_RS01150 PF00672 HAMP domain RR42_RS01150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS01150 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS01155 PF00072 Response regulator receiver domain RR42_RS01155 PF00486 Transcriptional regulatory protein, C terminal RR42_RS01160 PF00561 alpha/beta hydrolase fold RR42_RS01170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS01170 PF03466 LysR substrate binding domain RR42_RS01185 PF07690 Major Facilitator Superfamily RR42_RS01190 PF01435 Peptidase family M48 RR42_RS01200 PF00665 Integrase core domain RR42_RS01200 PF13276 HTH-like domain RR42_RS01200 PF13333 Integrase core domain RR42_RS01210 PF01118 Semialdehyde dehydrogenase, NAD binding domain RR42_RS01215 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RR42_RS01220 PF03372 Endonuclease/Exonuclease/phosphatase family RR42_RS01225 PF00156 Phosphoribosyl transferase domain RR42_RS01230 PF06314 Acetoacetate decarboxylase (ADC) RR42_RS01245 PF03976 Polyphosphate kinase 2 (PPK2) RR42_RS01250 PF01678 Diaminopimelate epimerase RR42_RS01265 PF02772 S-adenosylmethionine synthetase, central domain RR42_RS01265 PF02773 S-adenosylmethionine synthetase, C-terminal domain RR42_RS01265 PF00438 S-adenosylmethionine synthetase, N-terminal domain RR42_RS01275 PF00171 Aldehyde dehydrogenase family RR42_RS01280 PF00732 GMC oxidoreductase RR42_RS01280 PF05199 GMC oxidoreductase RR42_RS01285 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS01285 PF18158 Adaptive response protein AidB N-terminal domain RR42_RS01285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS01290 PF13667 ThiC-associated domain RR42_RS01290 PF01964 Radical SAM ThiC family RR42_RS01295 PF01266 FAD dependent oxidoreductase RR42_RS01305 PF05690 Thiazole biosynthesis protein ThiG RR42_RS01310 PF02581 Thiamine monophosphate synthase RR42_RS01315 PF00583 Acetyltransferase (GNAT) family RR42_RS01320 PF02463 RecF/RecN/SMC N terminal domain RR42_RS01330 PF02954 Bacterial regulatory protein, Fis family RR42_RS01330 PF00072 Response regulator receiver domain RR42_RS01330 PF00158 Sigma-54 interaction domain RR42_RS01335 PF01039 Carboxyl transferase domain RR42_RS01340 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS01345 PF13607 Succinyl-CoA ligase like flavodoxin domain RR42_RS01345 PF13380 CoA binding domain RR42_RS01350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR42_RS01350 PF00289 Biotin carboxylase, N-terminal domain RR42_RS01350 PF02785 Biotin carboxylase C-terminal domain RR42_RS01355 PF00364 Biotin-requiring enzyme RR42_RS01370 PF08543 Phosphomethylpyrimidine kinase RR42_RS01375 PF05221 S-adenosyl-L-homocysteine hydrolase RR42_RS01375 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RR42_RS01380 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV RR42_RS01385 PF02219 Methylenetetrahydrofolate reductase RR42_RS01400 PF01812 5-formyltetrahydrofolate cyclo-ligase family RR42_RS01405 PF01464 Transglycosylase SLT domain RR42_RS01405 PF14718 Soluble lytic murein transglycosylase L domain RR42_RS01415 PF13417 Glutathione S-transferase, N-terminal domain RR42_RS01415 PF00043 Glutathione S-transferase, C-terminal domain RR42_RS01420 PF12627 Probable RNA and SrmB- binding site of polymerase A RR42_RS01420 PF01966 HD domain RR42_RS01420 PF01743 Poly A polymerase head domain RR42_RS01445 PF01171 PP-loop family RR42_RS01455 PF12804 MobA-like NTP transferase domain RR42_RS01455 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS01460 PF01380 SIS domain RR42_RS01465 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS01465 PF02702 Osmosensitive K+ channel His kinase sensor domain RR42_RS01465 PF13493 Domain of unknown function (DUF4118) RR42_RS01465 PF13492 GAF domain RR42_RS01470 PF00072 Response regulator receiver domain RR42_RS01470 PF00486 Transcriptional regulatory protein, C terminal RR42_RS01480 PF13426 PAS domain RR42_RS01480 PF00563 EAL domain RR42_RS01480 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS01480 PF08448 PAS fold RR42_RS01480 PF05231 MASE1 RR42_RS01480 PF08447 PAS fold RR42_RS01495 PF00563 EAL domain RR42_RS01495 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS01495 PF03707 Bacterial signalling protein N terminal repeat RR42_RS01500 PF03061 Thioesterase superfamily RR42_RS01515 PF01467 Cytidylyltransferase-like RR42_RS01515 PF00293 NUDIX domain RR42_RS01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS01520 PF03466 LysR substrate binding domain RR42_RS01525 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS01530 PF00330 Aconitase family (aconitate hydratase) RR42_RS01535 PF00694 Aconitase C-terminal domain RR42_RS01540 PF00561 alpha/beta hydrolase fold RR42_RS01550 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS01555 PF01321 Creatinase/Prolidase N-terminal domain RR42_RS01555 PF00557 Metallopeptidase family M24 RR42_RS01560 PF00563 EAL domain RR42_RS01560 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS01560 PF03707 Bacterial signalling protein N terminal repeat RR42_RS01570 PF00155 Aminotransferase class I and II RR42_RS01570 PF00392 Bacterial regulatory proteins, gntR family RR42_RS01575 PF00202 Aminotransferase class-III RR42_RS01580 PF00171 Aldehyde dehydrogenase family RR42_RS01585 PF13520 Amino acid permease RR42_RS01590 PF00392 Bacterial regulatory proteins, gntR family RR42_RS01590 PF00155 Aminotransferase class I and II RR42_RS01600 PF02310 B12 binding domain RR42_RS01600 PF01642 Methylmalonyl-CoA mutase RR42_RS01605 PF01230 HIT domain RR42_RS01610 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR42_RS01610 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR42_RS01615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RR42_RS01615 PF08447 PAS fold RR42_RS01625 PF00501 AMP-binding enzyme RR42_RS01630 PF00005 ABC transporter RR42_RS01630 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS01635 PF02653 Branched-chain amino acid transport system / permease component RR42_RS01650 PF00005 ABC transporter RR42_RS01660 PF04304 Protein of unknown function (DUF454) RR42_RS01670 PF10672 S-adenosylmethionine-dependent methyltransferase RR42_RS01670 PF17785 PUA-like domain RR42_RS01675 PF04359 Protein of unknown function (DUF493) RR42_RS01680 PF07943 Penicillin-binding protein 5, C-terminal domain RR42_RS01680 PF00768 D-alanyl-D-alanine carboxypeptidase RR42_RS01685 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RR42_RS01695 PF00375 Sodium:dicarboxylate symporter family RR42_RS01700 PF02743 Cache domain RR42_RS01700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS01700 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS01705 PF00158 Sigma-54 interaction domain RR42_RS01705 PF02954 Bacterial regulatory protein, Fis family RR42_RS01705 PF00072 Response regulator receiver domain RR42_RS01710 PF00221 Aromatic amino acid lyase RR42_RS01715 PF13361 UvrD-like helicase C-terminal domain RR42_RS01715 PF00580 UvrD/REP helicase N-terminal domain RR42_RS01720 PF00578 AhpC/TSA family RR42_RS01735 PF01810 LysE type translocator RR42_RS01740 PF13335 Magnesium chelatase, subunit ChlI C-terminal RR42_RS01740 PF01078 Magnesium chelatase, subunit ChlI RR42_RS01745 PF04380 Membrane fusogenic activity RR42_RS01755 PF00543 Nitrogen regulatory protein P-II RR42_RS01760 PF00909 Ammonium Transporter Family RR42_RS01770 PF13276 HTH-like domain RR42_RS01770 PF00665 Integrase core domain RR42_RS01770 PF13333 Integrase core domain RR42_RS01780 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RR42_RS01780 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RR42_RS01790 PF00381 PTS HPr component phosphorylation site RR42_RS01795 PF00391 PEP-utilising enzyme, mobile domain RR42_RS01795 PF02896 PEP-utilising enzyme, TIM barrel domain RR42_RS01795 PF05524 PEP-utilising enzyme, N-terminal RR42_RS01800 PF00210 Ferritin-like domain RR42_RS01805 PF00586 AIR synthase related protein, N-terminal domain RR42_RS01805 PF02769 AIR synthase related protein, C-terminal domain RR42_RS01815 PF00899 ThiF family RR42_RS01820 PF13180 PDZ domain RR42_RS01820 PF03572 Peptidase family S41 RR42_RS01825 PF00300 Histidine phosphatase superfamily (branch 1) RR42_RS01830 PF00581 Rhodanese-like domain RR42_RS01835 PF00462 Glutaredoxin RR42_RS01840 PF02556 Preprotein translocase subunit SecB RR42_RS01845 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RR42_RS01845 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RR42_RS01850 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS01855 PF00588 SpoU rRNA Methylase family RR42_RS01860 PF14572 Phosphoribosyl synthetase-associated domain RR42_RS01860 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RR42_RS01865 PF08241 Methyltransferase domain RR42_RS01875 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RR42_RS01875 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RR42_RS01880 PF00115 Cytochrome C and Quinol oxidase polypeptide I RR42_RS01885 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 RR42_RS01895 PF00510 Cytochrome c oxidase subunit III RR42_RS01915 PF02628 Cytochrome oxidase assembly protein RR42_RS01920 PF01040 UbiA prenyltransferase family RR42_RS01925 PF02630 SCO1/SenC RR42_RS01930 PF04545 Sigma-70, region 4 RR42_RS01930 PF04542 Sigma-70 region 2 RR42_RS01930 PF00140 Sigma-70 factor, region 1.2 RR42_RS01935 PF02678 Pirin RR42_RS01935 PF05726 Pirin C-terminal cupin domain RR42_RS01940 PF02885 Glycosyl transferase family, helical bundle domain RR42_RS01945 PF00005 ABC transporter RR42_RS01950 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS01965 PF01557 Fumarylacetoacetate (FAA) hydrolase family RR42_RS01970 PF02798 Glutathione S-transferase, N-terminal domain RR42_RS01970 PF14497 Glutathione S-transferase, C-terminal domain RR42_RS01975 PF00448 SRP54-type protein, GTPase domain RR42_RS01975 PF02881 SRP54-type protein, helical bundle domain RR42_RS01980 PF05193 Peptidase M16 inactive domain RR42_RS01980 PF00675 Insulinase (Peptidase family M16) RR42_RS01985 PF05193 Peptidase M16 inactive domain RR42_RS01995 PF01467 Cytidylyltransferase-like RR42_RS02000 PF12838 4Fe-4S dicluster domain RR42_RS02005 PF01195 Peptidyl-tRNA hydrolase RR42_RS02010 PF01386 Ribosomal L25p family RR42_RS02010 PF14693 Ribosomal protein TL5, C-terminal domain RR42_RS02015 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RR42_RS02015 PF14572 Phosphoribosyl synthetase-associated domain RR42_RS02025 PF08544 GHMP kinases C terminal RR42_RS02025 PF00288 GHMP kinases N terminal domain RR42_RS02030 PF03550 Outer membrane lipoprotein LolB RR42_RS02040 PF06827 Zinc finger found in FPG and IleRS RR42_RS02040 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RR42_RS02040 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RR42_RS02050 PF10576 Iron-sulfur binding domain of endonuclease III RR42_RS02050 PF00633 Helix-hairpin-helix motif RR42_RS02050 PF00730 HhH-GPD superfamily base excision DNA repair protein RR42_RS02050 PF14815 NUDIX domain RR42_RS02060 PF03668 P-loop ATPase protein family RR42_RS02070 PF07475 HPr Serine kinase C-terminal domain RR42_RS02070 PF02603 HPr Serine kinase N terminus RR42_RS02075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RR42_RS02080 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RR42_RS02085 PF04552 Sigma-54, DNA binding domain RR42_RS02085 PF00309 Sigma-54 factor, Activator interacting domain (AID) RR42_RS02085 PF04963 Sigma-54 factor, core binding domain RR42_RS02090 PF00005 ABC transporter RR42_RS02105 PF00571 CBS domain RR42_RS02105 PF01380 SIS domain RR42_RS02110 PF02254 TrkA-N domain RR42_RS02110 PF00999 Sodium/hydrogen exchanger family RR42_RS02110 PF02080 TrkA-C domain RR42_RS02120 PF00117 Glutamine amidotransferase class-I RR42_RS02125 PF00156 Phosphoribosyl transferase domain RR42_RS02130 PF02690 Na+/Pi-cotransporter RR42_RS02145 PF17755 UvrA DNA-binding domain RR42_RS02145 PF17760 UvrA interaction domain RR42_RS02150 PF07690 Major Facilitator Superfamily RR42_RS02155 PF00436 Single-strand binding protein family RR42_RS02160 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS02165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS02165 PF03466 LysR substrate binding domain RR42_RS02175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RR42_RS02175 PF00205 Thiamine pyrophosphate enzyme, central domain RR42_RS02175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RR42_RS02180 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS02185 PF02910 Fumarate reductase flavoprotein C-term RR42_RS02185 PF00890 FAD binding domain RR42_RS02190 PF05683 Fumarase C-terminus RR42_RS02195 PF05683 Fumarase C-terminus RR42_RS02195 PF05681 Fumarate hydratase (Fumerase) RR42_RS02200 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS02215 PF13183 4Fe-4S dicluster domain RR42_RS02215 PF13085 2Fe-2S iron-sulfur cluster binding domain RR42_RS02225 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS02230 PF02615 Malate/L-lactate dehydrogenase RR42_RS02235 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR42_RS02235 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR42_RS02240 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RR42_RS02245 PF08666 SAF domain RR42_RS02250 PF07702 UTRA domain RR42_RS02250 PF00392 Bacterial regulatory proteins, gntR family RR42_RS02255 PF04185 Phosphoesterase family RR42_RS02260 PF03150 Di-haem cytochrome c peroxidase RR42_RS02260 PF00034 Cytochrome c RR42_RS02265 PF17760 UvrA interaction domain RR42_RS02265 PF00005 ABC transporter RR42_RS02265 PF17755 UvrA DNA-binding domain RR42_RS02275 PF00155 Aminotransferase class I and II RR42_RS02280 PF02321 Outer membrane efflux protein RR42_RS02290 PF00005 ABC transporter RR42_RS02300 PF00440 Bacterial regulatory proteins, tetR family RR42_RS02310 PF14489 QueF-like protein RR42_RS02310 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RR42_RS02315 PF00291 Pyridoxal-phosphate dependent enzyme RR42_RS02315 PF00585 C-terminal regulatory domain of Threonine dehydratase RR42_RS02320 PF02358 Trehalose-phosphatase RR42_RS02330 PF00982 Glycosyltransferase family 20 RR42_RS02340 PF02625 XdhC and CoxI family RR42_RS02340 PF13478 XdhC Rossmann domain RR42_RS02355 PF02190 ATP-dependent protease La (LON) substrate-binding domain RR42_RS02355 PF05362 Lon protease (S16) C-terminal proteolytic domain RR42_RS02355 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS02360 PF03450 CO dehydrogenase flavoprotein C-terminal domain RR42_RS02360 PF00941 FAD binding domain in molybdopterin dehydrogenase RR42_RS02365 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS02365 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RR42_RS02370 PF01799 [2Fe-2S] binding domain RR42_RS02370 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS02375 PF09335 SNARE associated Golgi protein RR42_RS02390 PF06472 ABC transporter transmembrane region 2 RR42_RS02390 PF00005 ABC transporter RR42_RS02400 PF01209 ubiE/COQ5 methyltransferase family RR42_RS02415 PF03109 ABC1 family RR42_RS02420 PF05724 Thiopurine S-methyltransferase (TPMT) RR42_RS02430 PF00474 Sodium:solute symporter family RR42_RS02445 PF00152 tRNA synthetases class II (D, K and N) RR42_RS02445 PF01336 OB-fold nucleic acid binding domain RR42_RS02445 PF02938 GAD domain RR42_RS02450 PF07690 Major Facilitator Superfamily RR42_RS02450 PF00083 Sugar (and other) transporter RR42_RS02455 PF00491 Arginase family RR42_RS02460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS02460 PF03466 LysR substrate binding domain RR42_RS02470 PF00293 NUDIX domain RR42_RS02475 PF03372 Endonuclease/Exonuclease/phosphatase family RR42_RS02480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS02480 PF03466 LysR substrate binding domain RR42_RS02490 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RR42_RS02495 PF13091 PLD-like domain RR42_RS02505 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS02505 PF12806 Acetyl-CoA dehydrogenase C-terminal like RR42_RS02505 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS02505 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS02510 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR42_RS02510 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR42_RS02510 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS02515 PF00108 Thiolase, N-terminal domain RR42_RS02515 PF02803 Thiolase, C-terminal domain RR42_RS02525 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS02530 PF03061 Thioesterase superfamily RR42_RS02535 PF00664 ABC transporter transmembrane region RR42_RS02535 PF00005 ABC transporter RR42_RS02545 PF00005 ABC transporter RR42_RS02550 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS02555 PF01037 Lrp/AsnC ligand binding domain RR42_RS02565 PF03466 LysR substrate binding domain RR42_RS02565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS02570 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RR42_RS02570 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RR42_RS02575 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS02580 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS02585 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS02590 PF00005 ABC transporter RR42_RS02595 PF13230 Glutamine amidotransferases class-II RR42_RS02600 PF00180 Isocitrate/isopropylmalate dehydrogenase RR42_RS02605 PF05161 MOFRL family RR42_RS02605 PF13660 Domain of unknown function (DUF4147) RR42_RS02610 PF01979 Amidohydrolase family RR42_RS02620 PF02566 OsmC-like protein RR42_RS02625 PF00572 Ribosomal protein L13 RR42_RS02630 PF00380 Ribosomal protein S9/S16 RR42_RS02645 PF01521 Iron-sulphur cluster biosynthesis RR42_RS02655 PF03466 LysR substrate binding domain RR42_RS02655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS02660 PF03702 Anhydro-N-acetylmuramic acid kinase RR42_RS02665 PF01551 Peptidase family M23 RR42_RS02670 PF01479 S4 domain RR42_RS02670 PF00579 tRNA synthetases class I (W and Y) RR42_RS02675 PF02580 D-Tyr-tRNA(Tyr) deacylase RR42_RS02680 PF01161 Phosphatidylethanolamine-binding protein RR42_RS02685 PF00300 Histidine phosphatase superfamily (branch 1) RR42_RS02700 PF17864 RuvB AAA lid domain RR42_RS02700 PF05496 Holliday junction DNA helicase RuvB P-loop domain RR42_RS02700 PF05491 RuvB C-terminal winged helix domain RR42_RS02705 PF07499 RuvA, C-terminal domain RR42_RS02705 PF01330 RuvA N terminal domain RR42_RS02710 PF03009 Glycerophosphoryl diester phosphodiesterase family RR42_RS02715 PF02075 Crossover junction endodeoxyribonuclease RuvC RR42_RS02720 PF01808 AICARFT/IMPCHase bienzyme RR42_RS02720 PF02142 MGS-like domain RR42_RS02725 PF02954 Bacterial regulatory protein, Fis family RR42_RS02730 PF01207 Dihydrouridine synthase (Dus) RR42_RS02735 PF01494 FAD binding domain RR42_RS02745 PF05195 Aminopeptidase P, N-terminal domain RR42_RS02745 PF00557 Metallopeptidase family M24 RR42_RS02750 PF00483 Nucleotidyl transferase RR42_RS02765 PF01636 Phosphotransferase enzyme family RR42_RS02770 PF04453 LPS transport system D RR42_RS02770 PF03968 OstA-like protein RR42_RS02775 PF09312 SurA N-terminal domain RR42_RS02775 PF00639 PPIC-type PPIASE domain RR42_RS02780 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RR42_RS02785 PF00398 Ribosomal RNA adenine dimethylase RR42_RS02790 PF00579 tRNA synthetases class I (W and Y) RR42_RS02800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RR42_RS02810 PF01553 Acyltransferase RR42_RS02820 PF05746 DALR anticodon binding domain RR42_RS02820 PF02092 Glycyl-tRNA synthetase beta subunit RR42_RS02830 PF02091 Glycyl-tRNA synthetase alpha subunit RR42_RS02835 PF00795 Carbon-nitrogen hydrolase RR42_RS02840 PF03471 Transporter associated domain RR42_RS02840 PF00571 CBS domain RR42_RS02845 PF02130 Uncharacterized protein family UPF0054 RR42_RS02850 PF02562 PhoH-like protein RR42_RS02855 PF00919 Uncharacterized protein family UPF0004 RR42_RS02855 PF04055 Radical SAM superfamily RR42_RS02855 PF01938 TRAM domain RR42_RS02865 PF00654 Voltage gated chloride channel RR42_RS02870 PF00270 DEAD/DEAH box helicase RR42_RS02870 PF00271 Helicase conserved C-terminal domain RR42_RS02875 PF01636 Phosphotransferase enzyme family RR42_RS02880 PF00582 Universal stress protein family RR42_RS02890 PF02627 Carboxymuconolactone decarboxylase family RR42_RS02900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS02900 PF03466 LysR substrate binding domain RR42_RS02905 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS02910 PF00155 Aminotransferase class I and II RR42_RS02930 PF01037 Lrp/AsnC ligand binding domain RR42_RS02935 PF00698 Acyl transferase domain RR42_RS02940 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG RR42_RS02950 PF01039 Carboxyl transferase domain RR42_RS02955 PF06857 Malonate decarboxylase delta subunit (MdcD) RR42_RS02960 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RR42_RS02965 PF16957 Malonate decarboxylase, alpha subunit, transporter RR42_RS02995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS02995 PF03466 LysR substrate binding domain RR42_RS03000 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS03005 PF00106 short chain dehydrogenase RR42_RS03010 PF00108 Thiolase, N-terminal domain RR42_RS03010 PF02803 Thiolase, C-terminal domain RR42_RS03015 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS03035 PF13533 Biotin-lipoyl like RR42_RS03040 PF02321 Outer membrane efflux protein RR42_RS03045 PF03180 NLPA lipoprotein RR42_RS03060 PF00083 Sugar (and other) transporter RR42_RS03070 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS03070 PF08521 Two-component sensor kinase N-terminal RR42_RS03070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS03075 PF00072 Response regulator receiver domain RR42_RS03075 PF00486 Transcriptional regulatory protein, C terminal RR42_RS03080 PF00154 recA bacterial DNA recombination protein RR42_RS03085 PF02631 RecX family RR42_RS03095 PF00549 CoA-ligase RR42_RS03095 PF08442 ATP-grasp domain RR42_RS03100 PF02629 CoA binding domain RR42_RS03100 PF00549 CoA-ligase RR42_RS03105 PF03741 Integral membrane protein TerC family RR42_RS03110 PF07963 Prokaryotic N-terminal methylation motif RR42_RS03110 PF00114 Pilin (bacterial filament) RR42_RS03140 PF01967 MoaC family RR42_RS03145 PF01435 Peptidase family M48 RR42_RS03155 PF00561 alpha/beta hydrolase fold RR42_RS03165 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RR42_RS03175 PF00176 SNF2 family N-terminal domain RR42_RS03175 PF00271 Helicase conserved C-terminal domain RR42_RS03175 PF12419 SNF2 Helicase protein RR42_RS03180 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS03200 PF00162 Phosphoglycerate kinase RR42_RS03210 PF02887 Pyruvate kinase, alpha/beta domain RR42_RS03210 PF00224 Pyruvate kinase, barrel domain RR42_RS03215 PF01116 Fructose-bisphosphate aldolase class-II RR42_RS03220 PF01259 SAICAR synthetase RR42_RS03225 PF00731 AIR carboxylase RR42_RS03230 PF02222 ATP-grasp domain RR42_RS03230 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RR42_RS03235 PF03481 Putative GTP-binding controlling metal-binding RR42_RS03235 PF01300 Telomere recombination RR42_RS03245 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RR42_RS03265 PF01494 FAD binding domain RR42_RS03280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS03280 PF03466 LysR substrate binding domain RR42_RS03290 PF00072 Response regulator receiver domain RR42_RS03290 PF00486 Transcriptional regulatory protein, C terminal RR42_RS03295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS03295 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS03300 PF02321 Outer membrane efflux protein RR42_RS03305 PF00873 AcrB/AcrD/AcrF family RR42_RS03310 PF00873 AcrB/AcrD/AcrF family RR42_RS03315 PF13533 Biotin-lipoyl like RR42_RS03320 PF00072 Response regulator receiver domain RR42_RS03320 PF00486 Transcriptional regulatory protein, C terminal RR42_RS03325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS03325 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS03325 PF00672 HAMP domain RR42_RS03335 PF02660 Glycerol-3-phosphate acyltransferase RR42_RS03340 PF04073 Aminoacyl-tRNA editing domain RR42_RS03345 PF00589 Phage integrase family RR42_RS03345 PF02899 Phage integrase, N-terminal SAM-like domain RR42_RS03350 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RR42_RS03350 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RR42_RS03360 PF00005 ABC transporter RR42_RS03365 PF02653 Branched-chain amino acid transport system / permease component RR42_RS03370 PF13407 Periplasmic binding protein domain RR42_RS03375 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RR42_RS03375 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RR42_RS03380 PF00342 Phosphoglucose isomerase RR42_RS03390 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS03405 PF08331 Domain of unknown function (DUF1730) RR42_RS03410 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RR42_RS03415 PF11741 AMIN domain RR42_RS03415 PF01520 N-acetylmuramoyl-L-alanine amidase RR42_RS03420 PF13593 SBF-like CPA transporter family (DUF4137) RR42_RS03425 PF03466 LysR substrate binding domain RR42_RS03425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS03430 PF08241 Methyltransferase domain RR42_RS03440 PF00106 short chain dehydrogenase RR42_RS03445 PF05191 Adenylate kinase, active site lid RR42_RS03450 PF02348 Cytidylyltransferase RR42_RS03455 PF03966 Trm112p-like protein RR42_RS03460 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RR42_RS03470 PF01618 MotA/TolQ/ExbB proton channel family RR42_RS03475 PF13742 OB-fold nucleic acid binding domain RR42_RS03475 PF02601 Exonuclease VII, large subunit RR42_RS03480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RR42_RS03480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RR42_RS03485 PF06812 ImpA, N-terminal, type VI secretion system RR42_RS03495 PF05947 Type VI secretion system, TssF RR42_RS03510 PF17871 AAA lid domain RR42_RS03510 PF07724 AAA domain (Cdc48 subfamily) RR42_RS03510 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS03510 PF10431 C-terminal, D2-small domain, of ClpB protein RR42_RS03515 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 RR42_RS03520 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath RR42_RS03525 PF05638 Type VI secretion system effector, Hcp RR42_RS03540 PF06715 Gp5 C-terminal repeat (3 copies) RR42_RS03540 PF04717 Type VI secretion system, phage-baseplate injector RR42_RS03575 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE RR42_RS03580 PF00691 OmpA family RR42_RS03580 PF13677 Membrane MotB of proton-channel complex MotA/MotB RR42_RS03585 PF06761 Intracellular multiplication and human macrophage-killing RR42_RS03585 PF14331 ImcF-related N-terminal domain RR42_RS03585 PF06744 Type VI secretion protein IcmF C-terminal RR42_RS03595 PF03466 LysR substrate binding domain RR42_RS03595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS03600 PF00561 alpha/beta hydrolase fold RR42_RS03605 PF13409 Glutathione S-transferase, N-terminal domain RR42_RS03610 PF00561 alpha/beta hydrolase fold RR42_RS03620 PF03279 Bacterial lipid A biosynthesis acyltransferase RR42_RS03630 PF00313 'Cold-shock' DNA-binding domain RR42_RS03665 PF01176 Translation initiation factor 1A / IF-1 RR42_RS03695 PF01970 Tripartite tricarboxylate transporter TctA family RR42_RS03705 PF00174 Oxidoreductase molybdopterin binding domain RR42_RS03710 PF01292 Prokaryotic cytochrome b561 RR42_RS03715 PF00459 Inositol monophosphatase family RR42_RS03720 PF00012 Hsp70 protein RR42_RS03730 PF03976 Polyphosphate kinase 2 (PPK2) RR42_RS03745 PF12728 Helix-turn-helix domain RR42_RS03745 PF12727 PBP superfamily domain RR42_RS03755 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RR42_RS03755 PF10531 SLBB domain RR42_RS03755 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RR42_RS03760 PF01568 Molydopterin dinucleotide binding domain RR42_RS03760 PF00384 Molybdopterin oxidoreductase RR42_RS03760 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RR42_RS03760 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RR42_RS03760 PF00037 4Fe-4S binding domain RR42_RS03765 PF02634 FdhD/NarQ family RR42_RS03775 PF00912 Transglycosylase RR42_RS03780 PF02615 Malate/L-lactate dehydrogenase RR42_RS03785 PF00939 Sodium:sulfate symporter transmembrane region RR42_RS03795 PF13350 Tyrosine phosphatase family RR42_RS03800 PF00871 Acetokinase family RR42_RS03805 PF01515 Phosphate acetyl/butaryl transferase RR42_RS03810 PF11339 Protein of unknown function (DUF3141) RR42_RS03825 PF03459 TOBE domain RR42_RS03825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS03830 PF03459 TOBE domain RR42_RS03830 PF00005 ABC transporter RR42_RS03835 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS03845 PF02872 5'-nucleotidase, C-terminal domain RR42_RS03845 PF00149 Calcineurin-like phosphoesterase RR42_RS03855 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS03860 PF00356 Bacterial regulatory proteins, lacI family RR42_RS03865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR42_RS03865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR42_RS03885 PF02470 MlaD protein RR42_RS03890 PF04403 Paraquat-inducible protein A RR42_RS03900 PF01594 AI-2E family transporter RR42_RS03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS03905 PF03466 LysR substrate binding domain RR42_RS03910 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS03910 PF01799 [2Fe-2S] binding domain RR42_RS03915 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS03920 PF00301 Rubredoxin RR42_RS03925 PF18113 Rubredoxin binding C-terminal domain RR42_RS03925 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS03930 PF00355 Rieske [2Fe-2S] domain RR42_RS03935 PF00860 Permease family RR42_RS03940 PF00005 ABC transporter RR42_RS03940 PF00571 CBS domain RR42_RS03950 PF01037 Lrp/AsnC ligand binding domain RR42_RS03960 PF02423 Ornithine cyclodeaminase/mu-crystallin family RR42_RS03980 PF02954 Bacterial regulatory protein, Fis family RR42_RS03980 PF00072 Response regulator receiver domain RR42_RS03980 PF00158 Sigma-54 interaction domain RR42_RS03985 PF02743 Cache domain RR42_RS03985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS03985 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS03990 PF00375 Sodium:dicarboxylate symporter family RR42_RS03995 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS03995 PF05231 MASE1 RR42_RS03995 PF08447 PAS fold RR42_RS03995 PF08448 PAS fold RR42_RS03995 PF13426 PAS domain RR42_RS03995 PF00563 EAL domain RR42_RS04000 PF01799 [2Fe-2S] binding domain RR42_RS04000 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS04005 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS04015 PF04542 Sigma-70 region 2 RR42_RS04015 PF08281 Sigma-70, region 4 RR42_RS04025 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RR42_RS04025 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RR42_RS04025 PF00034 Cytochrome c RR42_RS04050 PF00027 Cyclic nucleotide-binding domain RR42_RS04050 PF13545 Crp-like helix-turn-helix domain RR42_RS04065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS04065 PF03466 LysR substrate binding domain RR42_RS04070 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS04070 PF08659 KR domain RR42_RS04070 PF00550 Phosphopantetheine attachment site RR42_RS04070 PF14765 Polyketide synthase dehydratase RR42_RS04070 PF00698 Acyl transferase domain RR42_RS04075 PF00166 Chaperonin 10 Kd subunit RR42_RS04080 PF00118 TCP-1/cpn60 chaperonin family RR42_RS04100 PF00437 Type II/IV secretion system protein RR42_RS04130 PF00263 Bacterial type II and III secretion system protein RR42_RS04130 PF13629 Pilus formation protein N terminal region RR42_RS04130 PF04972 BON domain RR42_RS04145 PF01478 Type IV leader peptidase family RR42_RS04145 PF06750 Bacterial Peptidase A24 N-terminal domain RR42_RS04170 PF00535 Glycosyl transferase family 2 RR42_RS04180 PF03551 Transcriptional regulator PadR-like family RR42_RS04180 PF13847 Methyltransferase domain RR42_RS04185 PF02954 Bacterial regulatory protein, Fis family RR42_RS04185 PF00072 Response regulator receiver domain RR42_RS04185 PF00158 Sigma-54 interaction domain RR42_RS04205 PF03466 LysR substrate binding domain RR42_RS04205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS04225 PF04011 LemA family RR42_RS04230 PF00701 Dihydrodipicolinate synthetase family RR42_RS04235 PF00202 Aminotransferase class-III RR42_RS04240 PF00301 Rubredoxin RR42_RS04245 PF00072 Response regulator receiver domain RR42_RS04250 PF00072 Response regulator receiver domain RR42_RS04260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RR42_RS04260 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RR42_RS04265 PF07194 P2 response regulator binding domain RR42_RS04265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS04265 PF01627 Hpt domain RR42_RS04265 PF01584 CheW-like domain RR42_RS04265 PF02895 Signal transducing histidine kinase, homodimeric domain RR42_RS04270 PF07690 Major Facilitator Superfamily RR42_RS04280 PF00171 Aldehyde dehydrogenase family RR42_RS04285 PF00719 Inorganic pyrophosphatase RR42_RS04290 PF01292 Prokaryotic cytochrome b561 RR42_RS04300 PF00543 Nitrogen regulatory protein P-II RR42_RS04305 PF03458 UPF0126 domain RR42_RS04310 PF01713 Smr domain RR42_RS04315 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS04320 PF01580 FtsK/SpoIIIE family RR42_RS04320 PF09397 Ftsk gamma domain RR42_RS04320 PF17854 FtsK alpha domain RR42_RS04320 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RR42_RS04325 PF03548 Outer membrane lipoprotein carrier protein LolA RR42_RS04345 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS04350 PF00005 ABC transporter RR42_RS04350 PF08402 TOBE domain RR42_RS04355 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS04355 PF12002 MgsA AAA+ ATPase C terminal RR42_RS04355 PF16193 AAA C-terminal domain RR42_RS04360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RR42_RS04360 PF02403 Seryl-tRNA synthetase N-terminal domain RR42_RS04375 PF03471 Transporter associated domain RR42_RS04375 PF01595 Cyclin M transmembrane N-terminal domain RR42_RS04375 PF00571 CBS domain RR42_RS04380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS04380 PF03466 LysR substrate binding domain RR42_RS04385 PF01266 FAD dependent oxidoreductase RR42_RS04390 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS04395 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS04400 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS04405 PF08443 RimK-like ATP-grasp domain RR42_RS04405 PF08245 Mur ligase middle domain RR42_RS04405 PF02875 Mur ligase family, glutamate ligase domain RR42_RS04410 PF02875 Mur ligase family, glutamate ligase domain RR42_RS04410 PF08245 Mur ligase middle domain RR42_RS04410 PF08443 RimK-like ATP-grasp domain RR42_RS04415 PF00664 ABC transporter transmembrane region RR42_RS04415 PF00005 ABC transporter RR42_RS04430 PF13419 Haloacid dehalogenase-like hydrolase RR42_RS04440 PF00691 OmpA family RR42_RS04445 PF03989 DNA gyrase C-terminal domain, beta-propeller RR42_RS04445 PF00521 DNA gyrase/topoisomerase IV, subunit A RR42_RS04455 PF00266 Aminotransferase class-V RR42_RS04460 PF00800 Prephenate dehydratase RR42_RS04460 PF01842 ACT domain RR42_RS04460 PF01817 Chorismate mutase type II RR42_RS04465 PF00155 Aminotransferase class I and II RR42_RS04470 PF01842 ACT domain RR42_RS04470 PF02153 Prephenate dehydrogenase RR42_RS04475 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RR42_RS04485 PF02224 Cytidylate kinase RR42_RS04490 PF00575 S1 RNA binding domain RR42_RS04495 PF00216 Bacterial DNA-binding protein RR42_RS04505 PF18073 Rubredoxin metal binding domain RR42_RS04510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RR42_RS04510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RR42_RS04510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RR42_RS04515 PF00294 pfkB family carbohydrate kinase RR42_RS04520 PF01370 NAD dependent epimerase/dehydratase family RR42_RS04530 PF00860 Permease family RR42_RS04535 PF00291 Pyridoxal-phosphate dependent enzyme RR42_RS04540 PF13406 Transglycosylase SLT domain RR42_RS04545 PF00850 Histone deacetylase domain RR42_RS04550 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS04555 PF09383 NIL domain RR42_RS04555 PF00005 ABC transporter RR42_RS04560 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS04565 PF03180 NLPA lipoprotein RR42_RS04570 PF01012 Electron transfer flavoprotein domain RR42_RS04575 PF00766 Electron transfer flavoprotein FAD-binding domain RR42_RS04575 PF01012 Electron transfer flavoprotein domain RR42_RS04580 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS04580 PF12806 Acetyl-CoA dehydrogenase C-terminal like RR42_RS04580 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS04580 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS04585 PF01266 FAD dependent oxidoreductase RR42_RS04590 PF01037 Lrp/AsnC ligand binding domain RR42_RS04595 PF04055 Radical SAM superfamily RR42_RS04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS04600 PF03466 LysR substrate binding domain RR42_RS04615 PF07995 Glucose / Sorbosone dehydrogenase RR42_RS04620 PF00886 Ribosomal protein S16 RR42_RS04625 PF05239 PRC-barrel domain RR42_RS04625 PF01782 RimM N-terminal domain RR42_RS04630 PF01746 tRNA (Guanine-1)-methyltransferase RR42_RS04635 PF01245 Ribosomal protein L19 RR42_RS04640 PF00293 NUDIX domain RR42_RS04645 PF17773 UPF0176 acylphosphatase like domain RR42_RS04645 PF00581 Rhodanese-like domain RR42_RS04650 PF01336 OB-fold nucleic acid binding domain RR42_RS04650 PF07733 Bacterial DNA polymerase III alpha NTPase domain RR42_RS04650 PF02811 PHP domain RR42_RS04650 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RR42_RS04650 PF14579 Helix-hairpin-helix motif RR42_RS04655 PF00534 Glycosyl transferases group 1 RR42_RS04660 PF00535 Glycosyl transferase family 2 RR42_RS04670 PF00005 ABC transporter RR42_RS04670 PF00664 ABC transporter transmembrane region RR42_RS04680 PF00999 Sodium/hydrogen exchanger family RR42_RS04680 PF02254 TrkA-N domain RR42_RS04690 PF04116 Fatty acid hydroxylase superfamily RR42_RS04695 PF00440 Bacterial regulatory proteins, tetR family RR42_RS04700 PF10150 Ribonuclease E/G family RR42_RS04700 PF00575 S1 RNA binding domain RR42_RS04705 PF02545 Maf-like protein RR42_RS04710 PF02590 Predicted SPOUT methyltransferase RR42_RS04720 PF01467 Cytidylyltransferase-like RR42_RS04725 PF01218 Coproporphyrinogen III oxidase RR42_RS04730 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RR42_RS04730 PF02844 Phosphoribosylglycinamide synthetase, N domain RR42_RS04730 PF02843 Phosphoribosylglycinamide synthetase, C domain RR42_RS04735 PF01709 Transcriptional regulator RR42_RS04740 PF05872 Bacterial protein of unknown function (DUF853) RR42_RS04750 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS04760 PF00892 EamA-like transporter family RR42_RS04770 PF02142 MGS-like domain RR42_RS04775 PF00107 Zinc-binding dehydrogenase RR42_RS04775 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS04785 PF02608 ABC transporter substrate-binding protein PnrA-like RR42_RS04795 PF02653 Branched-chain amino acid transport system / permease component RR42_RS04800 PF00005 ABC transporter RR42_RS04805 PF05726 Pirin C-terminal cupin domain RR42_RS04805 PF02678 Pirin RR42_RS04810 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS04815 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RR42_RS04820 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS04825 PF00571 CBS domain RR42_RS04825 PF00005 ABC transporter RR42_RS04830 PF00171 Aldehyde dehydrogenase family RR42_RS04835 PF07729 FCD domain RR42_RS04835 PF00392 Bacterial regulatory proteins, gntR family RR42_RS04840 PF13378 Enolase C-terminal domain-like RR42_RS04840 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RR42_RS04845 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS04880 PF04055 Radical SAM superfamily RR42_RS04880 PF06969 HemN C-terminal domain RR42_RS04885 PF01725 Ham1 family RR42_RS04890 PF03725 3' exoribonuclease family, domain 2 RR42_RS04890 PF01138 3' exoribonuclease family, domain 1 RR42_RS04900 PF00069 Protein kinase domain RR42_RS04900 PF08239 Bacterial SH3 domain RR42_RS04905 PF03755 YicC-like family, N-terminal region RR42_RS04905 PF08340 Domain of unknown function (DUF1732) RR42_RS04910 PF00625 Guanylate kinase RR42_RS04915 PF01192 RNA polymerase Rpb6 RR42_RS04920 PF04607 Region found in RelA / SpoT proteins RR42_RS04920 PF13291 ACT domain RR42_RS04920 PF02824 TGS domain RR42_RS04925 PF01272 Transcription elongation factor, GreA/GreB, C-term RR42_RS04925 PF03449 Transcription elongation factor, N-terminal RR42_RS04960 PF13640 2OG-Fe(II) oxygenase superfamily RR42_RS04960 PF18331 PKHD-type hydroxylase C-terminal domain RR42_RS04975 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS04985 PF00155 Aminotransferase class I and II RR42_RS04985 PF00392 Bacterial regulatory proteins, gntR family RR42_RS05025 PF01062 Bestrophin, RFP-TM, chloride channel RR42_RS05055 PF12848 ABC transporter RR42_RS05055 PF00005 ABC transporter RR42_RS05070 PF00324 Amino acid permease RR42_RS05080 PF06052 3-hydroxyanthranilic acid dioxygenase RR42_RS05085 PF01042 Endoribonuclease L-PSP RR42_RS05095 PF00682 HMGL-like RR42_RS05095 PF07836 DmpG-like communication domain RR42_RS05100 PF01118 Semialdehyde dehydrogenase, NAD binding domain RR42_RS05100 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation RR42_RS05105 PF01557 Fumarylacetoacetate (FAA) hydrolase family RR42_RS05110 PF00171 Aldehyde dehydrogenase family RR42_RS05115 PF03466 LysR substrate binding domain RR42_RS05115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS05120 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS05125 PF00881 Nitroreductase family RR42_RS05135 PF00701 Dihydrodipicolinate synthetase family RR42_RS05140 PF07859 alpha/beta hydrolase fold RR42_RS05150 PF01557 Fumarylacetoacetate (FAA) hydrolase family RR42_RS05155 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR42_RS05155 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR42_RS05165 PF00392 Bacterial regulatory proteins, gntR family RR42_RS05165 PF07729 FCD domain RR42_RS05190 PF13333 Integrase core domain RR42_RS05190 PF00665 Integrase core domain RR42_RS05190 PF13276 HTH-like domain RR42_RS05195 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RR42_RS05200 PF11940 Domain of unknown function (DUF3458) Ig-like fold RR42_RS05200 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RR42_RS05200 PF01433 Peptidase family M1 domain RR42_RS05210 PF01515 Phosphate acetyl/butaryl transferase RR42_RS05210 PF03949 Malic enzyme, NAD binding domain RR42_RS05210 PF00390 Malic enzyme, N-terminal domain RR42_RS05220 PF00355 Rieske [2Fe-2S] domain RR42_RS05225 PF07690 Major Facilitator Superfamily RR42_RS05230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS05230 PF03466 LysR substrate binding domain RR42_RS05245 PF13609 Gram-negative porin RR42_RS05250 PF01014 Uricase RR42_RS05250 PF09349 OHCU decarboxylase RR42_RS05260 PF00860 Permease family RR42_RS05270 PF00576 HIUase/Transthyretin family RR42_RS05280 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RR42_RS05285 PF13360 PQQ-like domain RR42_RS05285 PF01011 PQQ enzyme repeat RR42_RS05300 PF00593 TonB dependent receptor RR42_RS05300 PF07715 TonB-dependent Receptor Plug Domain RR42_RS05320 PF01979 Amidohydrolase family RR42_RS05325 PF00962 Adenosine/AMP deaminase RR42_RS05335 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS05335 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RR42_RS05340 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS05340 PF01799 [2Fe-2S] binding domain RR42_RS05345 PF03466 LysR substrate binding domain RR42_RS05345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS05350 PF12849 PBP superfamily domain RR42_RS05355 PF03466 LysR substrate binding domain RR42_RS05355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS05385 PF03641 Possible lysine decarboxylase RR42_RS05390 PF08360 QacR-like protein, C-terminal region RR42_RS05390 PF00440 Bacterial regulatory proteins, tetR family RR42_RS05395 PF01219 Prokaryotic diacylglycerol kinase RR42_RS05400 PF13439 Glycosyltransferase Family 4 RR42_RS05400 PF00534 Glycosyl transferases group 1 RR42_RS05435 PF00205 Thiamine pyrophosphate enzyme, central domain RR42_RS05435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RR42_RS05435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RR42_RS05440 PF10369 Small subunit of acetolactate synthase RR42_RS05445 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RR42_RS05445 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RR42_RS05450 PF02666 Phosphatidylserine decarboxylase RR42_RS05455 PF01066 CDP-alcohol phosphatidyltransferase RR42_RS05460 PF04972 BON domain RR42_RS05460 PF01476 LysM domain RR42_RS05465 PF08502 LeuA allosteric (dimerisation) domain RR42_RS05465 PF00682 HMGL-like RR42_RS05475 PF13458 Periplasmic binding protein RR42_RS05480 PF00312 Ribosomal protein S15 RR42_RS05485 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RR42_RS05485 PF00013 KH domain RR42_RS05485 PF00575 S1 RNA binding domain RR42_RS05485 PF01138 3' exoribonuclease family, domain 1 RR42_RS05485 PF03725 3' exoribonuclease family, domain 2 RR42_RS05495 PF00121 Triosephosphate isomerase RR42_RS05500 PF03840 Preprotein translocase SecG subunit RR42_RS05510 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RR42_RS05515 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RR42_RS05520 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RR42_RS05525 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RR42_RS05535 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RR42_RS05535 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RR42_RS05535 PF10531 SLBB domain RR42_RS05540 PF00384 Molybdopterin oxidoreductase RR42_RS05540 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RR42_RS05540 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal RR42_RS05545 PF00146 NADH dehydrogenase RR42_RS05550 PF12838 4Fe-4S dicluster domain RR42_RS05555 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RR42_RS05560 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RR42_RS05565 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RR42_RS05565 PF00361 Proton-conducting membrane transporter RR42_RS05570 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus RR42_RS05570 PF00361 Proton-conducting membrane transporter RR42_RS05575 PF00361 Proton-conducting membrane transporter RR42_RS05595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS05595 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS05595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS05600 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS05600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS05600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS05610 PF01575 MaoC like domain RR42_RS05620 PF00561 alpha/beta hydrolase fold RR42_RS05625 PF00743 Flavin-binding monooxygenase-like RR42_RS05635 PF02653 Branched-chain amino acid transport system / permease component RR42_RS05645 PF00005 ABC transporter RR42_RS05645 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS05650 PF00005 ABC transporter RR42_RS05655 PF01774 UreD urease accessory protein RR42_RS05660 PF00547 Urease, gamma subunit RR42_RS05665 PF04955 HupE / UreJ protein RR42_RS05670 PF00699 Urease beta subunit RR42_RS05675 PF01979 Amidohydrolase family RR42_RS05675 PF00449 Urease alpha-subunit, N-terminal domain RR42_RS05680 PF02814 UreE urease accessory protein, N-terminal domain RR42_RS05680 PF05194 UreE urease accessory protein, C-terminal domain RR42_RS05685 PF01730 UreF RR42_RS05690 PF02492 CobW/HypB/UreG, nucleotide-binding domain RR42_RS05695 PF00291 Pyridoxal-phosphate dependent enzyme RR42_RS05700 PF01381 Helix-turn-helix RR42_RS05710 PF00043 Glutathione S-transferase, C-terminal domain RR42_RS05710 PF02798 Glutathione S-transferase, N-terminal domain RR42_RS05715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS05715 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS05715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS05720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS05720 PF03466 LysR substrate binding domain RR42_RS05730 PF08281 Sigma-70, region 4 RR42_RS05730 PF04542 Sigma-70 region 2 RR42_RS05735 PF12450 von Willebrand factor RR42_RS05735 PF00092 von Willebrand factor type A domain RR42_RS05735 PF12034 Domain of unknown function (DUF3520) RR42_RS05740 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS05755 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS05760 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR42_RS05760 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR42_RS05760 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RR42_RS05765 PF13417 Glutathione S-transferase, N-terminal domain RR42_RS05765 PF14497 Glutathione S-transferase, C-terminal domain RR42_RS05770 PF00155 Aminotransferase class I and II RR42_RS05780 PF03883 Peroxide stress protein YaaA RR42_RS05785 PF00246 Zinc carboxypeptidase RR42_RS05785 PF18027 Cytosolic carboxypeptidase N-terminal domain RR42_RS05800 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS05805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS05805 PF03466 LysR substrate binding domain RR42_RS05810 PF04542 Sigma-70 region 2 RR42_RS05810 PF08281 Sigma-70, region 4 RR42_RS05845 PF10431 C-terminal, D2-small domain, of ClpB protein RR42_RS05845 PF17871 AAA lid domain RR42_RS05845 PF07724 AAA domain (Cdc48 subfamily) RR42_RS05845 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS05845 PF02861 Clp amino terminal domain, pathogenicity island component RR42_RS05850 PF00034 Cytochrome c RR42_RS05855 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RR42_RS05860 PF00793 DAHP synthetase I family RR42_RS05870 PF13847 Methyltransferase domain RR42_RS05875 PF01523 Putative modulator of DNA gyrase RR42_RS05880 PF00795 Carbon-nitrogen hydrolase RR42_RS05890 PF03710 Glutamate-ammonia ligase adenylyltransferase RR42_RS05890 PF08335 GlnD PII-uridylyltransferase RR42_RS05900 PF00082 Subtilase family RR42_RS05900 PF04151 Bacterial pre-peptidase C-terminal domain RR42_RS05910 PF02463 RecF/RecN/SMC N terminal domain RR42_RS05915 PF01513 ATP-NAD kinase RR42_RS05920 PF01628 HrcA protein C terminal domain RR42_RS05925 PF00762 Ferrochelatase RR42_RS05930 PF01479 S4 domain RR42_RS05940 PF01025 GrpE RR42_RS05965 PF00881 Nitroreductase family RR42_RS05970 PF10576 Iron-sulfur binding domain of endonuclease III RR42_RS05970 PF00633 Helix-hairpin-helix motif RR42_RS05970 PF00730 HhH-GPD superfamily base excision DNA repair protein RR42_RS05975 PF04060 Putative Fe-S cluster RR42_RS05980 PF00440 Bacterial regulatory proteins, tetR family RR42_RS05980 PF17938 Tetracyclin repressor-like, C-terminal domain RR42_RS05990 PF00155 Aminotransferase class I and II RR42_RS05995 PF04851 Type III restriction enzyme, res subunit RR42_RS05995 PF12344 Ultra-violet resistance protein B RR42_RS05995 PF17757 UvrB interaction domain RR42_RS05995 PF02151 UvrB/uvrC motif RR42_RS05995 PF00271 Helicase conserved C-terminal domain RR42_RS06010 PF01451 Low molecular weight phosphotyrosine protein phosphatase RR42_RS06020 PF02082 Transcriptional regulator RR42_RS06025 PF00266 Aminotransferase class-V RR42_RS06030 PF01592 NifU-like N terminal domain RR42_RS06035 PF01521 Iron-sulphur cluster biosynthesis RR42_RS06045 PF07743 HSCB C-terminal oligomerisation domain RR42_RS06050 PF00012 Hsp70 protein RR42_RS06055 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS06060 PF04384 Iron-sulphur cluster assembly RR42_RS06070 PF01336 OB-fold nucleic acid binding domain RR42_RS06070 PF00152 tRNA synthetases class II (D, K and N) RR42_RS06075 PF00106 short chain dehydrogenase RR42_RS06080 PF00472 RF-1 domain RR42_RS06080 PF03462 PCRF domain RR42_RS06085 PF01476 LysM domain RR42_RS06085 PF01551 Peptidase family M23 RR42_RS06090 PF02272 DHHA1 domain RR42_RS06090 PF17768 RecJ OB domain RR42_RS06090 PF01368 DHH family RR42_RS06100 PF12704 MacB-like periplasmic core domain RR42_RS06100 PF02687 FtsX-like permease family RR42_RS06105 PF00005 ABC transporter RR42_RS06110 PF01026 TatD related DNase RR42_RS06115 PF00753 Metallo-beta-lactamase superfamily RR42_RS06115 PF03772 Competence protein RR42_RS06120 PF01418 Helix-turn-helix domain, rpiR family RR42_RS06120 PF01380 SIS domain RR42_RS06120 PF02685 Glucokinase RR42_RS06125 PF00920 Dehydratase family RR42_RS06130 PF01202 Shikimate kinase RR42_RS06135 PF14403 Circularly permuted ATP-grasp type 2 RR42_RS06145 PF01841 Transglutaminase-like superfamily RR42_RS06145 PF08379 Bacterial transglutaminase-like N-terminal region RR42_RS06160 PF06418 CTP synthase N-terminus RR42_RS06160 PF00117 Glutamine amidotransferase class-I RR42_RS06165 PF00793 DAHP synthetase I family RR42_RS06175 PF03952 Enolase, N-terminal domain RR42_RS06175 PF00113 Enolase, C-terminal TIM barrel domain RR42_RS06180 PF04977 Septum formation initiator RR42_RS06190 PF01430 Hsp33 protein RR42_RS06195 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS06200 PF04305 Protein of unknown function (DUF455) RR42_RS06210 PF00501 AMP-binding enzyme RR42_RS06210 PF13193 AMP-binding enzyme C-terminal domain RR42_RS06215 PF00561 alpha/beta hydrolase fold RR42_RS06220 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS06225 PF02811 PHP domain RR42_RS06230 PF01300 Telomere recombination RR42_RS06235 PF02163 Peptidase family M50 RR42_RS06240 PF00579 tRNA synthetases class I (W and Y) RR42_RS06250 PF00701 Dihydrodipicolinate synthetase family RR42_RS06255 PF06804 NlpB/DapX lipoprotein RR42_RS06260 PF00753 Metallo-beta-lactamase superfamily RR42_RS06270 PF08007 Cupin superfamily protein RR42_RS06275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RR42_RS06285 PF05190 MutS family domain IV RR42_RS06285 PF05192 MutS domain III RR42_RS06285 PF05188 MutS domain II RR42_RS06285 PF01624 MutS domain I RR42_RS06285 PF00488 MutS domain V RR42_RS06300 PF00392 Bacterial regulatory proteins, gntR family RR42_RS06300 PF00155 Aminotransferase class I and II RR42_RS06310 PF00459 Inositol monophosphatase family RR42_RS06315 PF00588 SpoU rRNA Methylase family RR42_RS06320 PF04303 PrpF protein RR42_RS06325 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS06330 PF00149 Calcineurin-like phosphoesterase RR42_RS06335 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RR42_RS06340 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RR42_RS06350 PF01406 tRNA synthetases class I (C) catalytic domain RR42_RS06350 PF09190 DALR domain RR42_RS06355 PF00730 HhH-GPD superfamily base excision DNA repair protein RR42_RS06360 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RR42_RS06365 PF09179 TilS substrate binding domain RR42_RS06365 PF01171 PP-loop family RR42_RS06365 PF11734 TilS substrate C-terminal domain RR42_RS06370 PF00696 Amino acid kinase family RR42_RS06370 PF13840 ACT domain RR42_RS06370 PF01842 ACT domain RR42_RS06385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR42_RS06390 PF03466 LysR substrate binding domain RR42_RS06390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS06395 PF00440 Bacterial regulatory proteins, tetR family RR42_RS06400 PF00474 Sodium:solute symporter family RR42_RS06405 PF04341 Protein of unknown function, DUF485 RR42_RS06410 PF01494 FAD binding domain RR42_RS06425 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS06435 PF01565 FAD binding domain RR42_RS06435 PF02913 FAD linked oxidases, C-terminal domain RR42_RS06445 PF03358 NADPH-dependent FMN reductase RR42_RS06450 PF03631 Virulence factor BrkB RR42_RS06460 PF00561 alpha/beta hydrolase fold RR42_RS06465 PF01053 Cys/Met metabolism PLP-dependent enzyme RR42_RS06475 PF07690 Major Facilitator Superfamily RR42_RS06485 PF01264 Chorismate synthase RR42_RS06490 PF12832 MFS_1 like family RR42_RS06495 PF01266 FAD dependent oxidoreductase RR42_RS06500 PF00392 Bacterial regulatory proteins, gntR family RR42_RS06500 PF07729 FCD domain RR42_RS06530 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RR42_RS06530 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RR42_RS06535 PF03480 Bacterial extracellular solute-binding protein, family 7 RR42_RS06555 PF01144 Coenzyme A transferase RR42_RS06560 PF01144 Coenzyme A transferase RR42_RS06570 PF00106 short chain dehydrogenase RR42_RS06580 PF01042 Endoribonuclease L-PSP RR42_RS06585 PF02824 TGS domain RR42_RS06585 PF13291 ACT domain RR42_RS06585 PF04607 Region found in RelA / SpoT proteins RR42_RS06600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RR42_RS06600 PF03129 Anticodon binding domain RR42_RS06600 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RR42_RS06600 PF02824 TGS domain RR42_RS06605 PF05198 Translation initiation factor IF-3, N-terminal domain RR42_RS06605 PF00707 Translation initiation factor IF-3, C-terminal domain RR42_RS06610 PF01632 Ribosomal protein L35 RR42_RS06615 PF00453 Ribosomal protein L20 RR42_RS06620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RR42_RS06620 PF01409 tRNA synthetases class II core domain (F) RR42_RS06625 PF03147 Ferredoxin-fold anticodon binding domain RR42_RS06625 PF03484 tRNA synthetase B5 domain RR42_RS06625 PF01588 Putative tRNA binding domain RR42_RS06625 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RR42_RS06625 PF03483 B3/4 domain RR42_RS06630 PF00216 Bacterial DNA-binding protein RR42_RS06780 PF01555 DNA methylase RR42_RS06835 PF04381 Putative exonuclease, RdgC RR42_RS06930 PF17854 FtsK alpha domain RR42_RS06930 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RR42_RS06930 PF09397 Ftsk gamma domain RR42_RS06930 PF01580 FtsK/SpoIIIE family RR42_RS06960 PF00149 Calcineurin-like phosphoesterase RR42_RS06995 PF01757 Acyltransferase family RR42_RS07270 PF05088 Bacterial NAD-glutamate dehydrogenase RR42_RS07275 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RR42_RS07275 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RR42_RS07285 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS07295 PF03466 LysR substrate binding domain RR42_RS07295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS07300 PF01979 Amidohydrolase family RR42_RS07315 PF00916 Sulfate permease family RR42_RS07315 PF01740 STAS domain RR42_RS07320 PF01047 MarR family RR42_RS07330 PF00392 Bacterial regulatory proteins, gntR family RR42_RS07330 PF07702 UTRA domain RR42_RS07335 PF07690 Major Facilitator Superfamily RR42_RS07340 PF01432 Peptidase family M3 RR42_RS07345 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RR42_RS07345 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RR42_RS07355 PF00196 Bacterial regulatory proteins, luxR family RR42_RS07355 PF00072 Response regulator receiver domain RR42_RS07360 PF00989 PAS fold RR42_RS07360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS07360 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS07365 PF17831 Pyruvate dehydrogenase E1 component middle domain RR42_RS07365 PF00456 Transketolase, thiamine diphosphate binding domain RR42_RS07370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RR42_RS07370 PF02817 e3 binding domain RR42_RS07370 PF00364 Biotin-requiring enzyme RR42_RS07380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RR42_RS07380 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS07385 PF09361 Phasin protein RR42_RS07390 PF00850 Histone deacetylase domain RR42_RS07400 PF03061 Thioesterase superfamily RR42_RS07405 PF00881 Nitroreductase family RR42_RS07410 PF00768 D-alanyl-D-alanine carboxypeptidase RR42_RS07415 PF01565 FAD binding domain RR42_RS07415 PF02913 FAD linked oxidases, C-terminal domain RR42_RS07425 PF01614 Bacterial transcriptional regulator RR42_RS07425 PF09339 IclR helix-turn-helix domain RR42_RS07430 PF02754 Cysteine-rich domain RR42_RS07435 PF13183 4Fe-4S dicluster domain RR42_RS07435 PF11870 Domain of unknown function (DUF3390) RR42_RS07435 PF02589 LUD domain RR42_RS07445 PF00005 ABC transporter RR42_RS07460 PF00248 Aldo/keto reductase family RR42_RS07465 PF01180 Dihydroorotate dehydrogenase RR42_RS07470 PF04377 Arginine-tRNA-protein transferase, C terminus RR42_RS07470 PF04376 Arginine-tRNA-protein transferase, N terminus RR42_RS07475 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RR42_RS07480 PF00293 NUDIX domain RR42_RS07480 PF09297 NADH pyrophosphatase zinc ribbon domain RR42_RS07500 PF00175 Oxidoreductase NAD-binding domain RR42_RS07500 PF00037 4Fe-4S binding domain RR42_RS07500 PF00970 Oxidoreductase FAD-binding domain RR42_RS07510 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS07515 PF01202 Shikimate kinase RR42_RS07520 PF00501 AMP-binding enzyme RR42_RS07520 PF13193 AMP-binding enzyme C-terminal domain RR42_RS07535 PF02653 Branched-chain amino acid transport system / permease component RR42_RS07540 PF02653 Branched-chain amino acid transport system / permease component RR42_RS07545 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS07545 PF00005 ABC transporter RR42_RS07550 PF00005 ABC transporter RR42_RS07555 PF02705 K+ potassium transporter RR42_RS07565 PF09371 Tex-like protein N-terminal domain RR42_RS07565 PF17674 HHH domain RR42_RS07565 PF16921 Tex protein YqgF-like domain RR42_RS07565 PF00575 S1 RNA binding domain RR42_RS07580 PF13307 Helicase C-terminal domain RR42_RS07580 PF04851 Type III restriction enzyme, res subunit RR42_RS07585 PF13525 Outer membrane lipoprotein RR42_RS07590 PF00849 RNA pseudouridylate synthase RR42_RS07590 PF01479 S4 domain RR42_RS07595 PF02578 Multi-copper polyphenol oxidoreductase laccase RR42_RS07605 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RR42_RS07610 PF02803 Thiolase, C-terminal domain RR42_RS07610 PF00108 Thiolase, N-terminal domain RR42_RS07615 PF00106 short chain dehydrogenase RR42_RS07620 PF05233 PHB accumulation regulatory domain RR42_RS07620 PF07879 PHB/PHA accumulation regulator DNA-binding domain RR42_RS07625 PF01207 Dihydrouridine synthase (Dus) RR42_RS07640 PF04055 Radical SAM superfamily RR42_RS07640 PF18693 TRAM domain RR42_RS07640 PF00919 Uncharacterized protein family UPF0004 RR42_RS07645 PF00108 Thiolase, N-terminal domain RR42_RS07645 PF02803 Thiolase, C-terminal domain RR42_RS07655 PF01053 Cys/Met metabolism PLP-dependent enzyme RR42_RS07675 PF16347 Domain of unknown function (DUF4976) RR42_RS07675 PF00884 Sulfatase RR42_RS07680 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS07685 PF07687 Peptidase dimerisation domain RR42_RS07685 PF01546 Peptidase family M20/M25/M40 RR42_RS07690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS07690 PF03466 LysR substrate binding domain RR42_RS07695 PF03466 LysR substrate binding domain RR42_RS07695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS07705 PF00107 Zinc-binding dehydrogenase RR42_RS07705 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS07715 PF00857 Isochorismatase family RR42_RS07725 PF00005 ABC transporter RR42_RS07735 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS07735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS07740 PF00072 Response regulator receiver domain RR42_RS07740 PF00486 Transcriptional regulatory protein, C terminal RR42_RS07760 PF02424 ApbE family RR42_RS07775 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS07795 PF00672 HAMP domain RR42_RS07795 PF02203 Tar ligand binding domain homologue RR42_RS07795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RR42_RS07800 PF09339 IclR helix-turn-helix domain RR42_RS07800 PF01614 Bacterial transcriptional regulator RR42_RS07805 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS07810 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS07815 PF00005 ABC transporter RR42_RS07820 PF01266 FAD dependent oxidoreductase RR42_RS07825 PF01266 FAD dependent oxidoreductase RR42_RS07830 PF01546 Peptidase family M20/M25/M40 RR42_RS07830 PF07687 Peptidase dimerisation domain RR42_RS07835 PF07690 Major Facilitator Superfamily RR42_RS07840 PF07687 Peptidase dimerisation domain RR42_RS07840 PF01546 Peptidase family M20/M25/M40 RR42_RS07845 PF03461 TRCF domain RR42_RS07845 PF00271 Helicase conserved C-terminal domain RR42_RS07845 PF00270 DEAD/DEAH box helicase RR42_RS07845 PF17757 UvrB interaction domain RR42_RS07845 PF02559 CarD-like/TRCF domain RR42_RS07850 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RR42_RS07855 PF02542 YgbB family RR42_RS07865 PF02627 Carboxymuconolactone decarboxylase family RR42_RS07870 PF00578 AhpC/TSA family RR42_RS07875 PF07690 Major Facilitator Superfamily RR42_RS07880 PF00672 HAMP domain RR42_RS07880 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS07880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS07885 PF00072 Response regulator receiver domain RR42_RS07885 PF00486 Transcriptional regulatory protein, C terminal RR42_RS07900 PF07687 Peptidase dimerisation domain RR42_RS07900 PF01546 Peptidase family M20/M25/M40 RR42_RS07915 PF00873 AcrB/AcrD/AcrF family RR42_RS07925 PF01425 Amidase RR42_RS07930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS07930 PF00005 ABC transporter RR42_RS07935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS07935 PF00005 ABC transporter RR42_RS07940 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS07940 PF12911 N-terminal TM domain of oligopeptide transport permease C RR42_RS07945 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS07950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR42_RS07955 PF01546 Peptidase family M20/M25/M40 RR42_RS07955 PF07687 Peptidase dimerisation domain RR42_RS07960 PF09339 IclR helix-turn-helix domain RR42_RS07960 PF01614 Bacterial transcriptional regulator RR42_RS07965 PF00392 Bacterial regulatory proteins, gntR family RR42_RS07965 PF07729 FCD domain RR42_RS07975 PF01425 Amidase RR42_RS07980 PF07690 Major Facilitator Superfamily RR42_RS07990 PF00589 Phage integrase family RR42_RS08075 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system RR42_RS08080 PF17854 FtsK alpha domain RR42_RS08080 PF09397 Ftsk gamma domain RR42_RS08080 PF01580 FtsK/SpoIIIE family RR42_RS08080 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RR42_RS08380 PF13276 HTH-like domain RR42_RS08380 PF13333 Integrase core domain RR42_RS08380 PF00665 Integrase core domain RR42_RS08405 PF00182 Chitinase class I RR42_RS08460 PF00589 Phage integrase family RR42_RS08705 PF17954 Quercetinase C-terminal cupin domain RR42_RS08705 PF02678 Pirin RR42_RS08715 PF03466 LysR substrate binding domain RR42_RS08715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS08720 PF07859 alpha/beta hydrolase fold RR42_RS08735 PF04434 SWIM zinc finger RR42_RS08740 PF00271 Helicase conserved C-terminal domain RR42_RS08740 PF00176 SNF2 family N-terminal domain RR42_RS08740 PF12419 SNF2 Helicase protein RR42_RS08755 PF04055 Radical SAM superfamily RR42_RS08755 PF06463 Molybdenum Cofactor Synthesis C RR42_RS08760 PF00196 Bacterial regulatory proteins, luxR family RR42_RS08760 PF00072 Response regulator receiver domain RR42_RS08765 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RR42_RS08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS08765 PF00672 HAMP domain RR42_RS08765 PF07730 Histidine kinase RR42_RS08770 PF03060 Nitronate monooxygenase RR42_RS08775 PF01136 Peptidase family U32 RR42_RS08780 PF01136 Peptidase family U32 RR42_RS08785 PF02036 SCP-2 sterol transfer family RR42_RS08790 PF08859 DGC domain RR42_RS08795 PF03205 Molybdopterin guanine dinucleotide synthesis protein B RR42_RS08805 PF02665 Nitrate reductase gamma subunit RR42_RS08810 PF02613 Nitrate reductase delta subunit RR42_RS08815 PF14711 Respiratory nitrate reductase beta C-terminal RR42_RS08815 PF13247 4Fe-4S dicluster domain RR42_RS08820 PF00384 Molybdopterin oxidoreductase RR42_RS08820 PF01568 Molydopterin dinucleotide binding domain RR42_RS08820 PF14710 Respiratory nitrate reductase alpha N-terminal RR42_RS08825 PF07690 Major Facilitator Superfamily RR42_RS08830 PF07690 Major Facilitator Superfamily RR42_RS08835 PF00158 Sigma-54 interaction domain RR42_RS08835 PF02954 Bacterial regulatory protein, Fis family RR42_RS08840 PF01814 Hemerythrin HHE cation binding domain RR42_RS08840 PF04405 Domain of Unknown function (DUF542) RR42_RS08845 PF00115 Cytochrome C and Quinol oxidase polypeptide I RR42_RS08865 PF01883 Iron-sulfur cluster assembly protein RR42_RS08875 PF02082 Transcriptional regulator RR42_RS08890 PF01814 Hemerythrin HHE cation binding domain RR42_RS08900 PF00672 HAMP domain RR42_RS08900 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RR42_RS08900 PF07730 Histidine kinase RR42_RS08900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS08905 PF00072 Response regulator receiver domain RR42_RS08905 PF00196 Bacterial regulatory proteins, luxR family RR42_RS08910 PF07690 Major Facilitator Superfamily RR42_RS08915 PF00384 Molybdopterin oxidoreductase RR42_RS08915 PF01568 Molydopterin dinucleotide binding domain RR42_RS08915 PF14710 Respiratory nitrate reductase alpha N-terminal RR42_RS08920 PF13247 4Fe-4S dicluster domain RR42_RS08920 PF14711 Respiratory nitrate reductase beta C-terminal RR42_RS08925 PF02613 Nitrate reductase delta subunit RR42_RS08930 PF02665 Nitrate reductase gamma subunit RR42_RS08935 PF00639 PPIC-type PPIASE domain RR42_RS08935 PF09312 SurA N-terminal domain RR42_RS08950 PF00484 Carbonic anhydrase RR42_RS08985 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS08990 PF00817 impB/mucB/samB family RR42_RS08990 PF11799 impB/mucB/samB family C-terminal domain RR42_RS09005 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RR42_RS09010 PF01266 FAD dependent oxidoreductase RR42_RS09010 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RR42_RS09015 PF05697 Bacterial trigger factor protein (TF) RR42_RS09015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RR42_RS09015 PF05698 Bacterial trigger factor protein (TF) C-terminus RR42_RS09020 PF00574 Clp protease RR42_RS09025 PF06689 ClpX C4-type zinc finger RR42_RS09025 PF10431 C-terminal, D2-small domain, of ClpB protein RR42_RS09025 PF07724 AAA domain (Cdc48 subfamily) RR42_RS09030 PF02190 ATP-dependent protease La (LON) substrate-binding domain RR42_RS09030 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS09030 PF05362 Lon protease (S16) C-terminal proteolytic domain RR42_RS09050 PF13472 GDSL-like Lipase/Acylhydrolase family RR42_RS09055 PF00005 ABC transporter RR42_RS09060 PF00342 Phosphoglucose isomerase RR42_RS09065 PF00892 EamA-like transporter family RR42_RS09070 PF01256 Carbohydrate kinase RR42_RS09075 PF01266 FAD dependent oxidoreductase RR42_RS09080 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RR42_RS09095 PF01425 Amidase RR42_RS09105 PF01968 Hydantoinase/oxoprolinase RR42_RS09105 PF05378 Hydantoinase/oxoprolinase N-terminal region RR42_RS09115 PF00732 GMC oxidoreductase RR42_RS09115 PF05199 GMC oxidoreductase RR42_RS09125 PF00034 Cytochrome c RR42_RS09125 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS09125 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RR42_RS09130 PF01799 [2Fe-2S] binding domain RR42_RS09130 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS09135 PF14863 Alkyl sulfatase dimerisation RR42_RS09135 PF14864 Alkyl sulfatase C-terminal RR42_RS09135 PF00753 Metallo-beta-lactamase superfamily RR42_RS09140 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RR42_RS09140 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RR42_RS09140 PF02769 AIR synthase related protein, C-terminal domain RR42_RS09150 PF00174 Oxidoreductase molybdopterin binding domain RR42_RS09155 PF01292 Prokaryotic cytochrome b561 RR42_RS09165 PF00486 Transcriptional regulatory protein, C terminal RR42_RS09165 PF00072 Response regulator receiver domain RR42_RS09170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS09170 PF00672 HAMP domain RR42_RS09170 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS09175 PF00970 Oxidoreductase FAD-binding domain RR42_RS09175 PF00042 Globin RR42_RS09175 PF00175 Oxidoreductase NAD-binding domain RR42_RS09180 PF02082 Transcriptional regulator RR42_RS09185 PF02627 Carboxymuconolactone decarboxylase family RR42_RS09190 PF00392 Bacterial regulatory proteins, gntR family RR42_RS09190 PF00155 Aminotransferase class I and II RR42_RS09200 PF00115 Cytochrome C and Quinol oxidase polypeptide I RR42_RS09210 PF00034 Cytochrome c RR42_RS09225 PF07690 Major Facilitator Superfamily RR42_RS09230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR42_RS09230 PF00529 HlyD membrane-fusion protein of T1SS RR42_RS09235 PF02321 Outer membrane efflux protein RR42_RS09240 PF01047 MarR family RR42_RS09265 PF00753 Metallo-beta-lactamase superfamily RR42_RS09265 PF16123 Hydroxyacylglutathione hydrolase C-terminus RR42_RS09270 PF02465 Flagellar hook-associated protein 2 N-terminus RR42_RS09270 PF07195 Flagellar hook-associated protein 2 C-terminus RR42_RS09290 PF00301 Rubredoxin RR42_RS09300 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RR42_RS09305 PF03466 LysR substrate binding domain RR42_RS09305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS09315 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS09320 PF00501 AMP-binding enzyme RR42_RS09320 PF13193 AMP-binding enzyme C-terminal domain RR42_RS09335 PF03104 DNA polymerase family B, exonuclease domain RR42_RS09335 PF00136 DNA polymerase family B RR42_RS09340 PF01810 LysE type translocator RR42_RS09355 PF13609 Gram-negative porin RR42_RS09365 PF07690 Major Facilitator Superfamily RR42_RS09370 PF05853 beta-keto acid cleavage enzyme RR42_RS09375 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RR42_RS09380 PF00107 Zinc-binding dehydrogenase RR42_RS09380 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS09390 PF00196 Bacterial regulatory proteins, luxR family RR42_RS09390 PF17874 MalT-like TPR region RR42_RS09395 PF01554 MatE RR42_RS09405 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS09405 PF00107 Zinc-binding dehydrogenase RR42_RS09410 PF01590 GAF domain RR42_RS09410 PF02954 Bacterial regulatory protein, Fis family RR42_RS09410 PF00158 Sigma-54 interaction domain RR42_RS09415 PF01546 Peptidase family M20/M25/M40 RR42_RS09415 PF07687 Peptidase dimerisation domain RR42_RS09425 PF03055 Retinal pigment epithelial membrane protein RR42_RS09430 PF13193 AMP-binding enzyme C-terminal domain RR42_RS09430 PF00501 AMP-binding enzyme RR42_RS09435 PF03167 Uracil DNA glycosylase superfamily RR42_RS09445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS09445 PF03466 LysR substrate binding domain RR42_RS09460 PF01488 Shikimate / quinate 5-dehydrogenase RR42_RS09460 PF08501 Shikimate dehydrogenase substrate binding domain RR42_RS09460 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RR42_RS09465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR42_RS09465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR42_RS09470 PF00294 pfkB family carbohydrate kinase RR42_RS09480 PF00005 ABC transporter RR42_RS09485 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS09490 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS09495 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS09500 PF00356 Bacterial regulatory proteins, lacI family RR42_RS09505 PF04116 Fatty acid hydroxylase superfamily RR42_RS09520 PF00486 Transcriptional regulatory protein, C terminal RR42_RS09520 PF00072 Response regulator receiver domain RR42_RS09525 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS09525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS09525 PF00672 HAMP domain RR42_RS09540 PF05951 Bacterial protein of unknown function (DUF882) RR42_RS09545 PF03734 L,D-transpeptidase catalytic domain RR42_RS09545 PF01471 Putative peptidoglycan binding domain RR42_RS09550 PF00582 Universal stress protein family RR42_RS09555 PF00582 Universal stress protein family RR42_RS09585 PF13545 Crp-like helix-turn-helix domain RR42_RS09585 PF00027 Cyclic nucleotide-binding domain RR42_RS09595 PF17200 Single Cache domain 2 RR42_RS09595 PF07730 Histidine kinase RR42_RS09600 PF00196 Bacterial regulatory proteins, luxR family RR42_RS09600 PF00072 Response regulator receiver domain RR42_RS09610 PF00753 Metallo-beta-lactamase superfamily RR42_RS09610 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RR42_RS09610 PF10996 Beta-Casp domain RR42_RS09625 PF00403 Heavy-metal-associated domain RR42_RS09640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS09640 PF03466 LysR substrate binding domain RR42_RS09650 PF03797 Autotransporter beta-domain RR42_RS09650 PF03212 Pertactin RR42_RS09665 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RR42_RS09665 PF17287 POTRA domain RR42_RS09665 PF08479 POTRA domain, ShlB-type RR42_RS09670 PF09222 Fimbrial adhesin F17-AG, lectin domain RR42_RS09670 PF00419 Fimbrial protein RR42_RS09690 PF00577 Outer membrane usher protein RR42_RS09690 PF13954 PapC N-terminal domain RR42_RS09690 PF13953 PapC C-terminal domain RR42_RS09695 PF02753 Pili assembly chaperone PapD, C-terminal domain RR42_RS09695 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RR42_RS09700 PF16970 Type-1 fimbrial protein, A RR42_RS09710 PF00563 EAL domain RR42_RS09710 PF00989 PAS fold RR42_RS09710 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS09710 PF01590 GAF domain RR42_RS09715 PF00196 Bacterial regulatory proteins, luxR family RR42_RS09715 PF00072 Response regulator receiver domain RR42_RS09720 PF09456 RcsC Alpha-Beta-Loop (ABL) RR42_RS09720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS09720 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS09720 PF00072 Response regulator receiver domain RR42_RS09725 PF02321 Outer membrane efflux protein RR42_RS09735 PF00005 ABC transporter RR42_RS09740 PF13533 Biotin-lipoyl like RR42_RS09745 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS09765 PF00156 Phosphoribosyl transferase domain RR42_RS09765 PF01738 Dienelactone hydrolase family RR42_RS09770 PF00583 Acetyltransferase (GNAT) family RR42_RS09770 PF13380 CoA binding domain RR42_RS09770 PF13607 Succinyl-CoA ligase like flavodoxin domain RR42_RS09775 PF00011 Hsp20/alpha crystallin family RR42_RS09790 PF00005 ABC transporter RR42_RS09800 PF02321 Outer membrane efflux protein RR42_RS09815 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS09815 PF03707 Bacterial signalling protein N terminal repeat RR42_RS09815 PF00563 EAL domain RR42_RS09835 PF02743 Cache domain RR42_RS09835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RR42_RS09835 PF00672 HAMP domain RR42_RS09865 PF14883 Hypothetical glycosyl hydrolase family 13 RR42_RS09865 PF01522 Polysaccharide deacetylase RR42_RS09870 PF00535 Glycosyl transferase family 2 RR42_RS09880 PF01380 SIS domain RR42_RS09890 PF00501 AMP-binding enzyme RR42_RS09890 PF13193 AMP-binding enzyme C-terminal domain RR42_RS09915 PF07690 Major Facilitator Superfamily RR42_RS09930 PF01850 PIN domain RR42_RS09940 PF08450 SMP-30/Gluconolactonase/LRE-like region RR42_RS09955 PF02627 Carboxymuconolactone decarboxylase family RR42_RS09960 PF05368 NmrA-like family RR42_RS09965 PF00392 Bacterial regulatory proteins, gntR family RR42_RS09965 PF00155 Aminotransferase class I and II RR42_RS09980 PF03707 Bacterial signalling protein N terminal repeat RR42_RS09980 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS09980 PF00563 EAL domain RR42_RS09990 PF01590 GAF domain RR42_RS09990 PF00563 EAL domain RR42_RS09990 PF00360 Phytochrome region RR42_RS09990 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS10000 PF03466 LysR substrate binding domain RR42_RS10000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS10005 PF01144 Coenzyme A transferase RR42_RS10010 PF01144 Coenzyme A transferase RR42_RS10015 PF07690 Major Facilitator Superfamily RR42_RS10025 PF02426 Muconolactone delta-isomerase RR42_RS10060 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS10060 PF00175 Oxidoreductase NAD-binding domain RR42_RS10060 PF00970 Oxidoreductase FAD-binding domain RR42_RS10070 PF03060 Nitronate monooxygenase RR42_RS10085 PF13193 AMP-binding enzyme C-terminal domain RR42_RS10085 PF00501 AMP-binding enzyme RR42_RS10095 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS10100 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS10105 PF00005 ABC transporter RR42_RS10120 PF03781 Sulfatase-modifying factor enzyme 1 RR42_RS10125 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS10125 PF03707 Bacterial signalling protein N terminal repeat RR42_RS10125 PF00563 EAL domain RR42_RS10135 PF00067 Cytochrome P450 RR42_RS10140 PF00155 Aminotransferase class I and II RR42_RS10190 PF00196 Bacterial regulatory proteins, luxR family RR42_RS10190 PF00072 Response regulator receiver domain RR42_RS10210 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS10210 PF00107 Zinc-binding dehydrogenase RR42_RS10215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR42_RS10225 PF03060 Nitronate monooxygenase RR42_RS10230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS10230 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS10230 PF12806 Acetyl-CoA dehydrogenase C-terminal like RR42_RS10230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS10235 PF13193 AMP-binding enzyme C-terminal domain RR42_RS10235 PF00501 AMP-binding enzyme RR42_RS10240 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS10245 PF01575 MaoC like domain RR42_RS10250 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS10260 PF00108 Thiolase, N-terminal domain RR42_RS10260 PF02803 Thiolase, C-terminal domain RR42_RS10265 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS10265 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR42_RS10265 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR42_RS10270 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS10275 PF00196 Bacterial regulatory proteins, luxR family RR42_RS10275 PF00072 Response regulator receiver domain RR42_RS10280 PF07730 Histidine kinase RR42_RS10280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS10280 PF00672 HAMP domain RR42_RS10310 PF05853 beta-keto acid cleavage enzyme RR42_RS10325 PF05378 Hydantoinase/oxoprolinase N-terminal region RR42_RS10325 PF01968 Hydantoinase/oxoprolinase RR42_RS10335 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS10340 PF00392 Bacterial regulatory proteins, gntR family RR42_RS10340 PF07729 FCD domain RR42_RS10345 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RR42_RS10345 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RR42_RS10355 PF01037 Lrp/AsnC ligand binding domain RR42_RS10360 PF13609 Gram-negative porin RR42_RS10365 PF00005 ABC transporter RR42_RS10370 PF00005 ABC transporter RR42_RS10370 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS10375 PF02653 Branched-chain amino acid transport system / permease component RR42_RS10375 PF11862 Domain of unknown function (DUF3382) RR42_RS10385 PF13458 Periplasmic binding protein RR42_RS10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS10405 PF03466 LysR substrate binding domain RR42_RS10425 PF07690 Major Facilitator Superfamily RR42_RS10440 PF00011 Hsp20/alpha crystallin family RR42_RS10445 PF00011 Hsp20/alpha crystallin family RR42_RS10455 PF02899 Phage integrase, N-terminal SAM-like domain RR42_RS10455 PF00589 Phage integrase family RR42_RS10490 PF00816 H-NS histone family RR42_RS10510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR42_RS10510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR42_RS10515 PF01557 Fumarylacetoacetate (FAA) hydrolase family RR42_RS10525 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS10540 PF00108 Thiolase, N-terminal domain RR42_RS10540 PF02803 Thiolase, C-terminal domain RR42_RS10545 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS10545 PF00107 Zinc-binding dehydrogenase RR42_RS10550 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS10550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR42_RS10560 PF00561 alpha/beta hydrolase fold RR42_RS10565 PF00561 alpha/beta hydrolase fold RR42_RS10570 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR42_RS10580 PF00107 Zinc-binding dehydrogenase RR42_RS10580 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS10585 PF00440 Bacterial regulatory proteins, tetR family RR42_RS10600 PF03480 Bacterial extracellular solute-binding protein, family 7 RR42_RS10605 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RR42_RS10605 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RR42_RS10610 PF00356 Bacterial regulatory proteins, lacI family RR42_RS10615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR42_RS10615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR42_RS10615 PF01842 ACT domain RR42_RS10620 PF04909 Amidohydrolase RR42_RS10625 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RR42_RS10625 PF13378 Enolase C-terminal domain-like RR42_RS10630 PF17941 Polyphosphate kinase C-terminal domain 1 RR42_RS10630 PF02503 Polyphosphate kinase middle domain RR42_RS10630 PF13090 Polyphosphate kinase C-terminal domain 2 RR42_RS10630 PF13089 Polyphosphate kinase N-terminal domain RR42_RS10640 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RR42_RS10640 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RR42_RS10650 PF00501 AMP-binding enzyme RR42_RS10650 PF13193 AMP-binding enzyme C-terminal domain RR42_RS10655 PF00676 Dehydrogenase E1 component RR42_RS10660 PF00364 Biotin-requiring enzyme RR42_RS10660 PF02780 Transketolase, C-terminal domain RR42_RS10660 PF02779 Transketolase, pyrimidine binding domain RR42_RS10665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RR42_RS10665 PF00364 Biotin-requiring enzyme RR42_RS10665 PF02817 e3 binding domain RR42_RS10670 PF00550 Phosphopantetheine attachment site RR42_RS10690 PF12146 Serine aminopeptidase, S33 RR42_RS10695 PF02426 Muconolactone delta-isomerase RR42_RS10710 PF02667 Short chain fatty acid transporter RR42_RS10720 PF01144 Coenzyme A transferase RR42_RS10725 PF00106 short chain dehydrogenase RR42_RS10735 PF13185 GAF domain RR42_RS10735 PF00158 Sigma-54 interaction domain RR42_RS10735 PF02954 Bacterial regulatory protein, Fis family RR42_RS10740 PF10503 Esterase PHB depolymerase RR42_RS10745 PF00282 Pyridoxal-dependent decarboxylase conserved domain RR42_RS10750 PF03979 Sigma-70 factor, region 1.1 RR42_RS10750 PF04546 Sigma-70, non-essential region RR42_RS10750 PF00140 Sigma-70 factor, region 1.2 RR42_RS10750 PF04542 Sigma-70 region 2 RR42_RS10750 PF04545 Sigma-70, region 4 RR42_RS10750 PF04539 Sigma-70 region 3 RR42_RS10755 PF07804 HipA-like C-terminal domain RR42_RS10765 PF01026 TatD related DNase RR42_RS10775 PF00034 Cytochrome c RR42_RS10775 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RR42_RS10785 PF00392 Bacterial regulatory proteins, gntR family RR42_RS10785 PF00155 Aminotransferase class I and II RR42_RS10790 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS10795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS10795 PF03466 LysR substrate binding domain RR42_RS10800 PF13454 FAD-NAD(P)-binding RR42_RS10805 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS10810 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS10810 PF12911 N-terminal TM domain of oligopeptide transport permease C RR42_RS10815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS10815 PF00005 ABC transporter RR42_RS10820 PF00005 ABC transporter RR42_RS10820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS10825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR42_RS10850 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RR42_RS10850 PF17854 FtsK alpha domain RR42_RS10850 PF01580 FtsK/SpoIIIE family RR42_RS10850 PF09397 Ftsk gamma domain RR42_RS10855 PF01590 GAF domain RR42_RS10855 PF00360 Phytochrome region RR42_RS10855 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS10855 PF00563 EAL domain RR42_RS10865 PF03466 LysR substrate binding domain RR42_RS10865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS10870 PF02525 Flavodoxin-like fold RR42_RS10875 PF03781 Sulfatase-modifying factor enzyme 1 RR42_RS10885 PF01026 TatD related DNase RR42_RS10890 PF00583 Acetyltransferase (GNAT) family RR42_RS10900 PF09115 DNA polymerase III, delta subunit, C terminal RR42_RS10905 PF02223 Thymidylate kinase RR42_RS10910 PF02618 YceG-like family RR42_RS10915 PF01571 Aminomethyltransferase folate-binding domain RR42_RS10935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS10935 PF03466 LysR substrate binding domain RR42_RS10955 PF00392 Bacterial regulatory proteins, gntR family RR42_RS10955 PF07729 FCD domain RR42_RS10960 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RR42_RS10960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RR42_RS10965 PF17042 Nucleotide-binding C-terminal domain RR42_RS10965 PF07005 Sugar-binding N-terminal domain RR42_RS10970 PF00596 Class II Aldolase and Adducin N-terminal domain RR42_RS10975 PF07690 Major Facilitator Superfamily RR42_RS10980 PF01261 Xylose isomerase-like TIM barrel RR42_RS10985 PF01370 NAD dependent epimerase/dehydratase family RR42_RS10995 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS11000 PF07859 alpha/beta hydrolase fold RR42_RS11005 PF00465 Iron-containing alcohol dehydrogenase RR42_RS11010 PF01661 Macro domain RR42_RS11025 PF01177 Asp/Glu/Hydantoin racemase RR42_RS11030 PF00561 alpha/beta hydrolase fold RR42_RS11035 PF00106 short chain dehydrogenase RR42_RS11045 PF00106 short chain dehydrogenase RR42_RS11050 PF00596 Class II Aldolase and Adducin N-terminal domain RR42_RS11055 PF00107 Zinc-binding dehydrogenase RR42_RS11055 PF16884 N-terminal domain of oxidoreductase RR42_RS11060 PF00144 Beta-lactamase RR42_RS11075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS11075 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS11075 PF12806 Acetyl-CoA dehydrogenase C-terminal like RR42_RS11075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS11085 PF00108 Thiolase, N-terminal domain RR42_RS11085 PF02803 Thiolase, C-terminal domain RR42_RS11090 PF00857 Isochorismatase family RR42_RS11095 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR42_RS11095 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR42_RS11095 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS11100 PF00324 Amino acid permease RR42_RS11105 PF00375 Sodium:dicarboxylate symporter family RR42_RS11110 PF00291 Pyridoxal-phosphate dependent enzyme RR42_RS11115 PF02423 Ornithine cyclodeaminase/mu-crystallin family RR42_RS11130 PF00005 ABC transporter RR42_RS11135 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS11135 PF00005 ABC transporter RR42_RS11145 PF02653 Branched-chain amino acid transport system / permease component RR42_RS11155 PF00501 AMP-binding enzyme RR42_RS11155 PF13193 AMP-binding enzyme C-terminal domain RR42_RS11160 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RR42_RS11165 PF01641 SelR domain RR42_RS11170 PF04279 Intracellular septation protein A RR42_RS11190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS11190 PF18158 Adaptive response protein AidB N-terminal domain RR42_RS11190 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS11195 PF11871 Domain of unknown function (DUF3391) RR42_RS11195 PF01966 HD domain RR42_RS11205 PF01266 FAD dependent oxidoreductase RR42_RS11210 PF07364 Metallopeptidase family M81 RR42_RS11210 PF07171 MlrC C-terminus RR42_RS11215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR42_RS11220 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS11225 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS11230 PF00005 ABC transporter RR42_RS11230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS11235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS11235 PF00005 ABC transporter RR42_RS11240 PF07969 Amidohydrolase family RR42_RS11250 PF00571 CBS domain RR42_RS11250 PF00291 Pyridoxal-phosphate dependent enzyme RR42_RS11255 PF02954 Bacterial regulatory protein, Fis family RR42_RS11255 PF06506 Propionate catabolism activator RR42_RS11255 PF00158 Sigma-54 interaction domain RR42_RS11265 PF00285 Citrate synthase, C-terminal domain RR42_RS11270 PF00330 Aconitase family (aconitate hydratase) RR42_RS11270 PF00694 Aconitase C-terminal domain RR42_RS11275 PF04303 PrpF protein RR42_RS11285 PF03061 Thioesterase superfamily RR42_RS11290 PF00440 Bacterial regulatory proteins, tetR family RR42_RS11295 PF00392 Bacterial regulatory proteins, gntR family RR42_RS11295 PF07729 FCD domain RR42_RS11300 PF01370 NAD dependent epimerase/dehydratase family RR42_RS11305 PF07690 Major Facilitator Superfamily RR42_RS11310 PF13609 Gram-negative porin RR42_RS11320 PF03473 MOSC domain RR42_RS11320 PF03475 3-alpha domain RR42_RS11325 PF01804 Penicillin amidase RR42_RS11330 PF00171 Aldehyde dehydrogenase family RR42_RS11340 PF00501 AMP-binding enzyme RR42_RS11340 PF13193 AMP-binding enzyme C-terminal domain RR42_RS11345 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS11345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS11345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS11350 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RR42_RS11360 PF00171 Aldehyde dehydrogenase family RR42_RS11365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS11365 PF03466 LysR substrate binding domain RR42_RS11370 PF12848 ABC transporter RR42_RS11370 PF00005 ABC transporter RR42_RS11375 PF17676 LD-carboxypeptidase C-terminal domain RR42_RS11375 PF02016 LD-carboxypeptidase N-terminal domain RR42_RS11380 PF14437 MafB19-like deaminase RR42_RS11385 PF01242 6-pyruvoyl tetrahydropterin synthase RR42_RS11395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS11395 PF03466 LysR substrate binding domain RR42_RS11400 PF07690 Major Facilitator Superfamily RR42_RS11420 PF01734 Patatin-like phospholipase RR42_RS11425 PF07690 Major Facilitator Superfamily RR42_RS11440 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RR42_RS11445 PF01590 GAF domain RR42_RS11445 PF02954 Bacterial regulatory protein, Fis family RR42_RS11445 PF00158 Sigma-54 interaction domain RR42_RS11455 PF00561 alpha/beta hydrolase fold RR42_RS11460 PF12706 Beta-lactamase superfamily domain RR42_RS11465 PF03070 TENA/THI-4/PQQC family RR42_RS11470 PF05402 Coenzyme PQQ synthesis protein D (PqqD) RR42_RS11475 PF04055 Radical SAM superfamily RR42_RS11475 PF13186 Iron-sulfur cluster-binding domain RR42_RS11480 PF00034 Cytochrome c RR42_RS11485 PF13360 PQQ-like domain RR42_RS11485 PF01011 PQQ enzyme repeat RR42_RS11490 PF02569 Pantoate-beta-alanine ligase RR42_RS11520 PF00005 ABC transporter RR42_RS11525 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS11530 PF00196 Bacterial regulatory proteins, luxR family RR42_RS11530 PF00072 Response regulator receiver domain RR42_RS11535 PF07730 Histidine kinase RR42_RS11535 PF05231 MASE1 RR42_RS11535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS11540 PF00593 TonB dependent receptor RR42_RS11540 PF07715 TonB-dependent Receptor Plug Domain RR42_RS11545 PF01361 Tautomerase enzyme RR42_RS11555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS11555 PF03466 LysR substrate binding domain RR42_RS11560 PF18381 YcaO cyclodehydratase C-terminal domain RR42_RS11560 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding RR42_RS11565 PF00563 EAL domain RR42_RS11565 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS11565 PF03707 Bacterial signalling protein N terminal repeat RR42_RS11585 PF00156 Phosphoribosyl transferase domain RR42_RS11585 PF01738 Dienelactone hydrolase family RR42_RS11610 PF07075 Protein of unknown function (DUF1343) RR42_RS11625 PF00156 Phosphoribosyl transferase domain RR42_RS11625 PF01738 Dienelactone hydrolase family RR42_RS11630 PF00689 Cation transporting ATPase, C-terminus RR42_RS11630 PF00690 Cation transporter/ATPase, N-terminus RR42_RS11635 PF00571 CBS domain RR42_RS11650 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RR42_RS11650 PF00561 alpha/beta hydrolase fold RR42_RS11655 PF00011 Hsp20/alpha crystallin family RR42_RS11665 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) RR42_RS11670 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RR42_RS11670 PF00591 Glycosyl transferase family, a/b domain RR42_RS11670 PF02885 Glycosyl transferase family, helical bundle domain RR42_RS11675 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RR42_RS11675 PF14572 Phosphoribosyl synthetase-associated domain RR42_RS11690 PF00156 Phosphoribosyl transferase domain RR42_RS11690 PF05139 Erythromycin esterase RR42_RS11730 PF12728 Helix-turn-helix domain RR42_RS11740 PF02540 NAD synthase RR42_RS11740 PF00958 GMP synthase C terminal domain RR42_RS11740 PF00117 Glutamine amidotransferase class-I RR42_RS11750 PF00571 CBS domain RR42_RS11750 PF00478 IMP dehydrogenase / GMP reductase domain RR42_RS11765 PF03658 RnfH family Ubiquitin RR42_RS11770 PF03364 Polyketide cyclase / dehydrase and lipid transport RR42_RS11775 PF01668 SmpB protein RR42_RS11780 PF16200 C-terminal region of band_7 RR42_RS11780 PF01145 SPFH domain / Band 7 family RR42_RS11790 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RR42_RS11790 PF02896 PEP-utilising enzyme, TIM barrel domain RR42_RS11790 PF00391 PEP-utilising enzyme, mobile domain RR42_RS11795 PF03618 Kinase/pyrophosphorylase RR42_RS11800 PF00588 SpoU rRNA Methylase family RR42_RS11800 PF08032 RNA 2'-O ribose methyltransferase substrate binding RR42_RS11805 PF01351 Ribonuclease HII RR42_RS11810 PF02684 Lipid-A-disaccharide synthetase RR42_RS11815 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RR42_RS11815 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS11820 PF07977 FabA-like domain RR42_RS11825 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RR42_RS11825 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS11835 PF07244 Surface antigen variable number repeat RR42_RS11835 PF01103 Surface antigen RR42_RS11840 PF17820 PDZ domain RR42_RS11840 PF02163 Peptidase family M50 RR42_RS11845 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RR42_RS11845 PF13288 DXP reductoisomerase C-terminal domain RR42_RS11845 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RR42_RS11855 PF01255 Putative undecaprenyl diphosphate synthase RR42_RS11860 PF01765 Ribosome recycling factor RR42_RS11865 PF00696 Amino acid kinase family RR42_RS11870 PF00889 Elongation factor TS RR42_RS11875 PF00318 Ribosomal protein S2 RR42_RS11880 PF00557 Metallopeptidase family M24 RR42_RS11885 PF01909 Nucleotidyltransferase domain RR42_RS11885 PF01966 HD domain RR42_RS11885 PF08335 GlnD PII-uridylyltransferase RR42_RS11890 PF00849 RNA pseudouridylate synthase RR42_RS11890 PF01479 S4 domain RR42_RS11900 PF01327 Polypeptide deformylase RR42_RS11905 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RR42_RS11905 PF00533 BRCA1 C Terminus (BRCT) domain RR42_RS11905 PF01653 NAD-dependent DNA ligase adenylation domain RR42_RS11905 PF03120 NAD-dependent DNA ligase OB-fold domain RR42_RS11905 PF12826 Helix-hairpin-helix motif RR42_RS11915 PF02463 RecF/RecN/SMC N terminal domain RR42_RS11915 PF06470 SMC proteins Flexible Hinge Domain RR42_RS11930 PF00155 Aminotransferase class I and II RR42_RS11935 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RR42_RS11935 PF14602 Hexapeptide repeat of succinyl-transferase RR42_RS11935 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS11945 PF03960 ArsC family RR42_RS11950 PF07687 Peptidase dimerisation domain RR42_RS11950 PF01546 Peptidase family M20/M25/M40 RR42_RS11955 PF05175 Methyltransferase small domain RR42_RS11975 PF03576 Peptidase family S58 RR42_RS11980 PF12911 N-terminal TM domain of oligopeptide transport permease C RR42_RS11980 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS11985 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS11990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR42_RS11995 PF00005 ABC transporter RR42_RS11995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS12000 PF01112 Asparaginase RR42_RS12010 PF00005 ABC transporter RR42_RS12010 PF12848 ABC transporter RR42_RS12015 PF02600 Disulfide bond formation protein DsbB RR42_RS12020 PF13302 Acetyltransferase (GNAT) domain RR42_RS12030 PF18073 Rubredoxin metal binding domain RR42_RS12035 PF01168 Alanine racemase, N-terminal domain RR42_RS12035 PF00842 Alanine racemase, C-terminal domain RR42_RS12040 PF07690 Major Facilitator Superfamily RR42_RS12050 PF03167 Uracil DNA glycosylase superfamily RR42_RS12060 PF00814 Glycoprotease family RR42_RS12070 PF07690 Major Facilitator Superfamily RR42_RS12090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS12090 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS12095 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS12095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS12100 PF00296 Luciferase-like monooxygenase RR42_RS12105 PF00296 Luciferase-like monooxygenase RR42_RS12120 PF00072 Response regulator receiver domain RR42_RS12120 PF09456 RcsC Alpha-Beta-Loop (ABL) RR42_RS12120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS12120 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS12125 PF00196 Bacterial regulatory proteins, luxR family RR42_RS12125 PF00072 Response regulator receiver domain RR42_RS12135 PF09456 RcsC Alpha-Beta-Loop (ABL) RR42_RS12135 PF00072 Response regulator receiver domain RR42_RS12135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS12135 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS12145 PF05860 haemagglutination activity domain RR42_RS12150 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB RR42_RS12150 PF08479 POTRA domain, ShlB-type RR42_RS12155 PF02753 Pili assembly chaperone PapD, C-terminal domain RR42_RS12155 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RR42_RS12160 PF00577 Outer membrane usher protein RR42_RS12160 PF13954 PapC N-terminal domain RR42_RS12160 PF13953 PapC C-terminal domain RR42_RS12165 PF02753 Pili assembly chaperone PapD, C-terminal domain RR42_RS12165 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RR42_RS12175 PF01274 Malate synthase RR42_RS12185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS12185 PF03466 LysR substrate binding domain RR42_RS12190 PF00582 Universal stress protein family RR42_RS12195 PF01435 Peptidase family M48 RR42_RS12200 PF00463 Isocitrate lyase family RR42_RS12205 PF00561 alpha/beta hydrolase fold RR42_RS12215 PF03737 Aldolase/RraA RR42_RS12225 PF00072 Response regulator receiver domain RR42_RS12225 PF04397 LytTr DNA-binding domain RR42_RS12230 PF06580 Histidine kinase RR42_RS12230 PF02743 Cache domain RR42_RS12230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS12230 PF00672 HAMP domain RR42_RS12245 PF03466 LysR substrate binding domain RR42_RS12245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS12250 PF12857 TOBE-like domain RR42_RS12250 PF17850 CysA C-terminal regulatory domain RR42_RS12250 PF00005 ABC transporter RR42_RS12255 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS12260 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS12280 PF00005 ABC transporter RR42_RS12285 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS12290 PF00296 Luciferase-like monooxygenase RR42_RS12315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS12315 PF03466 LysR substrate binding domain RR42_RS12325 PF02798 Glutathione S-transferase, N-terminal domain RR42_RS12325 PF00043 Glutathione S-transferase, C-terminal domain RR42_RS12330 PF13417 Glutathione S-transferase, N-terminal domain RR42_RS12330 PF00043 Glutathione S-transferase, C-terminal domain RR42_RS12335 PF00884 Sulfatase RR42_RS12340 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS12350 PF08274 PhnA Zinc-Ribbon RR42_RS12350 PF03831 PhnA domain RR42_RS12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS12355 PF03466 LysR substrate binding domain RR42_RS12360 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS12370 PF13649 Methyltransferase domain RR42_RS12375 PF03466 LysR substrate binding domain RR42_RS12375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS12380 PF09723 Zinc ribbon domain RR42_RS12385 PF03069 Acetamidase/Formamidase family RR42_RS12390 PF02293 AmiS/UreI family transporter RR42_RS12400 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS12400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS12400 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS12405 PF11849 Domain of unknown function (DUF3369) RR42_RS12410 PF00144 Beta-lactamase RR42_RS12415 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS12420 PF02515 CoA-transferase family III RR42_RS12425 PF00682 HMGL-like RR42_RS12430 PF03466 LysR substrate binding domain RR42_RS12430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS12435 PF03699 Uncharacterised protein family (UPF0182) RR42_RS12455 PF10431 C-terminal, D2-small domain, of ClpB protein RR42_RS12455 PF02861 Clp amino terminal domain, pathogenicity island component RR42_RS12455 PF07724 AAA domain (Cdc48 subfamily) RR42_RS12455 PF17871 AAA lid domain RR42_RS12455 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS12465 PF10605 3HB-oligomer hydrolase (3HBOH) RR42_RS12470 PF00501 AMP-binding enzyme RR42_RS12470 PF13193 AMP-binding enzyme C-terminal domain RR42_RS12475 PF11862 Domain of unknown function (DUF3382) RR42_RS12475 PF02653 Branched-chain amino acid transport system / permease component RR42_RS12480 PF11862 Domain of unknown function (DUF3382) RR42_RS12480 PF02653 Branched-chain amino acid transport system / permease component RR42_RS12485 PF00005 ABC transporter RR42_RS12490 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS12490 PF00005 ABC transporter RR42_RS12500 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS12505 PF00440 Bacterial regulatory proteins, tetR family RR42_RS12510 PF08241 Methyltransferase domain RR42_RS12510 PF12697 Alpha/beta hydrolase family RR42_RS12515 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RR42_RS12520 PF02391 MoaE protein RR42_RS12530 PF00994 Probable molybdopterin binding domain RR42_RS12530 PF03453 MoeA N-terminal region (domain I and II) RR42_RS12530 PF03454 MoeA C-terminal region (domain IV) RR42_RS12535 PF00291 Pyridoxal-phosphate dependent enzyme RR42_RS12535 PF14821 Threonine synthase N terminus RR42_RS12540 PF00742 Homoserine dehydrogenase RR42_RS12540 PF01842 ACT domain RR42_RS12540 PF03447 Homoserine dehydrogenase, NAD binding domain RR42_RS12545 PF00155 Aminotransferase class I and II RR42_RS12555 PF00578 AhpC/TSA family RR42_RS12560 PF02562 PhoH-like protein RR42_RS12560 PF13638 PIN domain RR42_RS12570 PF00877 NlpC/P60 family RR42_RS12575 PF01384 Phosphate transporter family RR42_RS12585 PF00772 DnaB-like helicase N terminal domain RR42_RS12585 PF03796 DnaB-like helicase C terminal domain RR42_RS12590 PF03948 Ribosomal protein L9, C-terminal domain RR42_RS12590 PF01281 Ribosomal protein L9, N-terminal domain RR42_RS12595 PF01084 Ribosomal protein S18 RR42_RS12605 PF01250 Ribosomal protein S6 RR42_RS12610 PF17763 Glutaminase/Asparaginase C-terminal domain RR42_RS12610 PF00710 Asparaginase, N-terminal RR42_RS12615 PF00717 Peptidase S24-like RR42_RS12615 PF01726 LexA DNA binding domain RR42_RS12665 PF01207 Dihydrouridine synthase (Dus) RR42_RS12675 PF00072 Response regulator receiver domain RR42_RS12675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS12705 PF02954 Bacterial regulatory protein, Fis family RR42_RS12705 PF00158 Sigma-54 interaction domain RR42_RS12705 PF00072 Response regulator receiver domain RR42_RS12710 PF00005 ABC transporter RR42_RS12710 PF03412 Peptidase C39 family RR42_RS12710 PF00664 ABC transporter transmembrane region RR42_RS12725 PF16697 Inner membrane component of T3SS, cytoplasmic domain RR42_RS12730 PF02321 Outer membrane efflux protein RR42_RS12760 PF03781 Sulfatase-modifying factor enzyme 1 RR42_RS12765 PF03793 PASTA domain RR42_RS12765 PF00069 Protein kinase domain RR42_RS12790 PF03358 NADPH-dependent FMN reductase RR42_RS12795 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS12800 PF00672 HAMP domain RR42_RS12800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RR42_RS12800 PF02203 Tar ligand binding domain homologue RR42_RS12805 PF04116 Fatty acid hydroxylase superfamily RR42_RS12810 PF00679 Elongation factor G C-terminus RR42_RS12810 PF00009 Elongation factor Tu GTP binding domain RR42_RS12810 PF03144 Elongation factor Tu domain 2 RR42_RS12820 PF02321 Outer membrane efflux protein RR42_RS12825 PF00529 HlyD membrane-fusion protein of T1SS RR42_RS12825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR42_RS12830 PF07690 Major Facilitator Superfamily RR42_RS12835 PF01509 TruB family pseudouridylate synthase (N terminal domain) RR42_RS12835 PF16198 tRNA pseudouridylate synthase B C-terminal domain RR42_RS12835 PF09157 Pseudouridine synthase II TruB, C-terminal RR42_RS12840 PF02033 Ribosome-binding factor A RR42_RS12845 PF08364 Bacterial translation initiation factor IF-2 associated region RR42_RS12845 PF00009 Elongation factor Tu GTP binding domain RR42_RS12845 PF04760 Translation initiation factor IF-2, N-terminal region RR42_RS12845 PF11987 Translation-initiation factor 2 RR42_RS12850 PF08529 NusA N-terminal domain RR42_RS12850 PF13184 NusA-like KH domain RR42_RS12855 PF17384 RimP C-terminal SH3 domain RR42_RS12855 PF02576 RimP N-terminal domain RR42_RS12860 PF00849 RNA pseudouridylate synthase RR42_RS12860 PF01479 S4 domain RR42_RS12865 PF04079 Segregation and condensation complex subunit ScpB RR42_RS12875 PF13545 Crp-like helix-turn-helix domain RR42_RS12875 PF00027 Cyclic nucleotide-binding domain RR42_RS12890 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RR42_RS12890 PF12801 4Fe-4S binding domain RR42_RS12890 PF13746 4Fe-4S dicluster domain RR42_RS12895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RR42_RS12895 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RR42_RS12910 PF00115 Cytochrome C and Quinol oxidase polypeptide I RR42_RS12920 PF00403 Heavy-metal-associated domain RR42_RS12925 PF03969 AFG1-like ATPase RR42_RS12930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RR42_RS12930 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS12935 PF00364 Biotin-requiring enzyme RR42_RS12935 PF02817 e3 binding domain RR42_RS12935 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RR42_RS12940 PF00676 Dehydrogenase E1 component RR42_RS12940 PF16870 2-oxoglutarate dehydrogenase C-terminal RR42_RS12940 PF02779 Transketolase, pyrimidine binding domain RR42_RS12940 PF16078 2-oxoglutarate dehydrogenase N-terminus RR42_RS12945 PF00916 Sulfate permease family RR42_RS12945 PF01740 STAS domain RR42_RS12950 PF03009 Glycerophosphoryl diester phosphodiesterase family RR42_RS12955 PF00005 ABC transporter RR42_RS12955 PF17912 MalK OB fold domain RR42_RS12960 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS12965 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS12970 PF13416 Bacterial extracellular solute-binding protein RR42_RS12980 PF02954 Bacterial regulatory protein, Fis family RR42_RS12980 PF00158 Sigma-54 interaction domain RR42_RS12980 PF00072 Response regulator receiver domain RR42_RS12985 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS12985 PF00989 PAS fold RR42_RS12985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS12995 PF00120 Glutamine synthetase, catalytic domain RR42_RS12995 PF03951 Glutamine synthetase, beta-Grasp domain RR42_RS13030 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RR42_RS13030 PF00270 DEAD/DEAH box helicase RR42_RS13030 PF00271 Helicase conserved C-terminal domain RR42_RS13030 PF04408 Helicase associated domain (HA2) RR42_RS13030 PF11898 Domain of unknown function (DUF3418) RR42_RS13035 PF00696 Amino acid kinase family RR42_RS13035 PF00583 Acetyltransferase (GNAT) family RR42_RS13040 PF04362 Bacterial Fe(2+) trafficking RR42_RS13045 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RR42_RS13050 PF00923 Transaldolase/Fructose-6-phosphate aldolase RR42_RS13055 PF02146 Sir2 family RR42_RS13060 PF00588 SpoU rRNA Methylase family RR42_RS13060 PF08032 RNA 2'-O ribose methyltransferase substrate binding RR42_RS13065 PF08206 Ribonuclease B OB domain RR42_RS13065 PF08461 Ribonuclease R winged-helix domain RR42_RS13065 PF00575 S1 RNA binding domain RR42_RS13065 PF17876 Cold shock domain RR42_RS13065 PF00773 RNB domain RR42_RS13075 PF02082 Transcriptional regulator RR42_RS13080 PF13460 NAD(P)H-binding RR42_RS13085 PF00156 Phosphoribosyl transferase domain RR42_RS13090 PF00709 Adenylosuccinate synthetase RR42_RS13095 PF13393 Histidyl-tRNA synthetase RR42_RS13100 PF01145 SPFH domain / Band 7 family RR42_RS13105 PF12221 Bacterial membrane protein N terminal RR42_RS13105 PF01145 SPFH domain / Band 7 family RR42_RS13110 PF16360 GTP-binding GTPase Middle Region RR42_RS13110 PF13167 GTP-binding GTPase N-terminal RR42_RS13110 PF01926 50S ribosome-binding GTPase RR42_RS13115 PF17209 Hfq protein RR42_RS13120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RR42_RS13120 PF01926 50S ribosome-binding GTPase RR42_RS13125 PF13360 PQQ-like domain RR42_RS13130 PF09976 Tetratricopeptide repeat-like domain RR42_RS13135 PF03129 Anticodon binding domain RR42_RS13135 PF13393 Histidyl-tRNA synthetase RR42_RS13140 PF04551 GcpE protein RR42_RS13155 PF04055 Radical SAM superfamily RR42_RS13160 PF00334 Nucleoside diphosphate kinase RR42_RS13165 PF01027 Inhibitor of apoptosis-promoting Bax1 RR42_RS13170 PF05958 tRNA (Uracil-5-)-methyltransferase RR42_RS13185 PF00140 Sigma-70 factor, region 1.2 RR42_RS13185 PF04545 Sigma-70, region 4 RR42_RS13185 PF04542 Sigma-70 region 2 RR42_RS13185 PF04539 Sigma-70 region 3 RR42_RS13190 PF01476 LysM domain RR42_RS13190 PF01551 Peptidase family M23 RR42_RS13200 PF01975 Survival protein SurE RR42_RS13205 PF14765 Polyketide synthase dehydratase RR42_RS13205 PF00109 Beta-ketoacyl synthase, N-terminal domain RR42_RS13205 PF02801 Beta-ketoacyl synthase, C-terminal domain RR42_RS13205 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS13205 PF00107 Zinc-binding dehydrogenase RR42_RS13205 PF16197 Ketoacyl-synthetase C-terminal extension RR42_RS13205 PF00698 Acyl transferase domain RR42_RS13205 PF00550 Phosphopantetheine attachment site RR42_RS13205 PF08659 KR domain RR42_RS13210 PF13609 Gram-negative porin RR42_RS13215 PF00486 Transcriptional regulatory protein, C terminal RR42_RS13215 PF00072 Response regulator receiver domain RR42_RS13220 PF08521 Two-component sensor kinase N-terminal RR42_RS13220 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS13220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS13235 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS13240 PF00005 ABC transporter RR42_RS13250 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS13255 PF00682 HMGL-like RR42_RS13260 PF02515 CoA-transferase family III RR42_RS13270 PF13662 Toprim domain RR42_RS13270 PF02132 RecR protein RR42_RS13275 PF03992 Antibiotic biosynthesis monooxygenase RR42_RS13280 PF02575 YbaB/EbfC DNA-binding family RR42_RS13285 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RR42_RS13285 PF12170 DNA polymerase III tau subunit V interacting with alpha RR42_RS13285 PF12169 DNA polymerase III subunits gamma and tau domain III RR42_RS13290 PF00317 Ribonucleotide reductase, all-alpha domain RR42_RS13290 PF02867 Ribonucleotide reductase, barrel domain RR42_RS13290 PF03477 ATP cone domain RR42_RS13295 PF13361 UvrD-like helicase C-terminal domain RR42_RS13295 PF12705 PD-(D/E)XK nuclease superfamily RR42_RS13295 PF00580 UvrD/REP helicase N-terminal domain RR42_RS13310 PF00085 Thioredoxin RR42_RS13315 PF07497 Rho termination factor, RNA-binding domain RR42_RS13315 PF07498 Rho termination factor, N-terminal domain RR42_RS13315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RR42_RS13325 PF01197 Ribosomal protein L31 RR42_RS13335 PF01554 MatE RR42_RS13355 PF00749 tRNA synthetases class I (E and Q), catalytic domain RR42_RS13360 PF01734 Patatin-like phospholipase RR42_RS13365 PF00877 NlpC/P60 family RR42_RS13370 PF00005 ABC transporter RR42_RS13370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS13375 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS13375 PF12911 N-terminal TM domain of oligopeptide transport permease C RR42_RS13380 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS13385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR42_RS13395 PF12146 Serine aminopeptidase, S33 RR42_RS13405 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS13415 PF01176 Translation initiation factor 1A / IF-1 RR42_RS13430 PF02541 Ppx/GppA phosphatase family RR42_RS13435 PF02503 Polyphosphate kinase middle domain RR42_RS13435 PF13090 Polyphosphate kinase C-terminal domain 2 RR42_RS13435 PF17941 Polyphosphate kinase C-terminal domain 1 RR42_RS13435 PF13089 Polyphosphate kinase N-terminal domain RR42_RS13440 PF11808 Phosphate regulon sensor protein PhoR RR42_RS13440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS13440 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS13440 PF00989 PAS fold RR42_RS13445 PF00072 Response regulator receiver domain RR42_RS13445 PF00486 Transcriptional regulatory protein, C terminal RR42_RS13450 PF01895 PhoU domain RR42_RS13455 PF00005 ABC transporter RR42_RS13460 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS13465 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS13470 PF12849 PBP superfamily domain RR42_RS13475 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RR42_RS13475 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RR42_RS13475 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RR42_RS13475 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RR42_RS13480 PF00809 Pterin binding enzyme RR42_RS13485 PF01434 Peptidase family M41 RR42_RS13485 PF06480 FtsH Extracellular RR42_RS13485 PF17862 AAA+ lid domain RR42_RS13485 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS13490 PF01728 FtsJ-like methyltransferase RR42_RS13495 PF01985 CRS1 / YhbY (CRM) domain RR42_RS13505 PF01272 Transcription elongation factor, GreA/GreB, C-term RR42_RS13505 PF03449 Transcription elongation factor, N-terminal RR42_RS13510 PF02142 MGS-like domain RR42_RS13510 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RR42_RS13510 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR42_RS13515 PF01810 LysE type translocator RR42_RS13520 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RR42_RS13520 PF00117 Glutamine amidotransferase class-I RR42_RS13535 PF00501 AMP-binding enzyme RR42_RS13535 PF13193 AMP-binding enzyme C-terminal domain RR42_RS13540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS13540 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS13540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS13545 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS13550 PF00106 short chain dehydrogenase RR42_RS13555 PF01494 FAD binding domain RR42_RS13560 PF13193 AMP-binding enzyme C-terminal domain RR42_RS13560 PF16177 Acetyl-coenzyme A synthetase N-terminus RR42_RS13560 PF00501 AMP-binding enzyme RR42_RS13565 PF01476 LysM domain RR42_RS13565 PF01464 Transglycosylase SLT domain RR42_RS13570 PF00753 Metallo-beta-lactamase superfamily RR42_RS13570 PF16123 Hydroxyacylglutathione hydrolase C-terminus RR42_RS13575 PF08241 Methyltransferase domain RR42_RS13580 PF00075 RNase H RR42_RS13585 PF00929 Exonuclease RR42_RS13610 PF01614 Bacterial transcriptional regulator RR42_RS13610 PF09339 IclR helix-turn-helix domain RR42_RS13620 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS13620 PF01799 [2Fe-2S] binding domain RR42_RS13625 PF00941 FAD binding domain in molybdopterin dehydrogenase RR42_RS13625 PF03450 CO dehydrogenase flavoprotein C-terminal domain RR42_RS13630 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS13630 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RR42_RS13635 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS13640 PF01047 MarR family RR42_RS13645 PF00083 Sugar (and other) transporter RR42_RS13650 PF00970 Oxidoreductase FAD-binding domain RR42_RS13650 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS13660 PF00171 Aldehyde dehydrogenase family RR42_RS13665 PF01958 Domain of unknown function DUF108 RR42_RS13665 PF03447 Homoserine dehydrogenase, NAD binding domain RR42_RS13670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RR42_RS13670 PF00205 Thiamine pyrophosphate enzyme, central domain RR42_RS13670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RR42_RS13680 PF09339 IclR helix-turn-helix domain RR42_RS13680 PF01614 Bacterial transcriptional regulator RR42_RS13695 PF00355 Rieske [2Fe-2S] domain RR42_RS13710 PF13609 Gram-negative porin RR42_RS13715 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS13720 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RR42_RS13735 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RR42_RS13740 PF00857 Isochorismatase family RR42_RS13745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS13745 PF03466 LysR substrate binding domain RR42_RS13775 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS13780 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS13785 PF08402 TOBE domain RR42_RS13785 PF00005 ABC transporter RR42_RS13790 PF00005 ABC transporter RR42_RS13790 PF08402 TOBE domain RR42_RS13795 PF00455 DeoR C terminal sensor domain RR42_RS13795 PF08220 DeoR-like helix-turn-helix domain RR42_RS13800 PF00551 Formyl transferase RR42_RS13810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RR42_RS13810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RR42_RS13815 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RR42_RS13815 PF01266 FAD dependent oxidoreductase RR42_RS13840 PF00144 Beta-lactamase RR42_RS13875 PF00474 Sodium:solute symporter family RR42_RS13880 PF13193 AMP-binding enzyme C-terminal domain RR42_RS13880 PF00501 AMP-binding enzyme RR42_RS13880 PF16177 Acetyl-coenzyme A synthetase N-terminus RR42_RS13885 PF00892 EamA-like transporter family RR42_RS13890 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS13890 PF00672 HAMP domain RR42_RS13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS13895 PF00486 Transcriptional regulatory protein, C terminal RR42_RS13895 PF00072 Response regulator receiver domain RR42_RS13910 PF01177 Asp/Glu/Hydantoin racemase RR42_RS13915 PF05362 Lon protease (S16) C-terminal proteolytic domain RR42_RS13915 PF02190 ATP-dependent protease La (LON) substrate-binding domain RR42_RS13915 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS13925 PF01618 MotA/TolQ/ExbB proton channel family RR42_RS13930 PF02472 Biopolymer transport protein ExbD/TolR RR42_RS13940 PF03928 Haem-degrading RR42_RS13960 PF03601 Conserved hypothetical protein 698 RR42_RS13965 PF03466 LysR substrate binding domain RR42_RS13965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS13970 PF00999 Sodium/hydrogen exchanger family RR42_RS13970 PF02254 TrkA-N domain RR42_RS13975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RR42_RS13975 PF00672 HAMP domain RR42_RS13975 PF02203 Tar ligand binding domain homologue RR42_RS13995 PF01066 CDP-alcohol phosphatidyltransferase RR42_RS14000 PF01541 GIY-YIG catalytic domain RR42_RS14000 PF02151 UvrB/uvrC motif RR42_RS14000 PF08459 UvrC Helix-hairpin-helix N-terminal RR42_RS14010 PF08207 Elongation factor P (EF-P) KOW-like domain RR42_RS14010 PF01132 Elongation factor P (EF-P) OB domain RR42_RS14010 PF09285 Elongation factor P, C-terminal RR42_RS14015 PF00933 Glycosyl hydrolase family 3 N terminal domain RR42_RS14020 PF01648 4'-phosphopantetheinyl transferase superfamily RR42_RS14025 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RR42_RS14030 PF02565 Recombination protein O C terminal RR42_RS14030 PF11967 Recombination protein O N terminal RR42_RS14035 PF01926 50S ribosome-binding GTPase RR42_RS14035 PF07650 KH domain RR42_RS14040 PF14622 Ribonuclease-III-like RR42_RS14040 PF00035 Double-stranded RNA binding motif RR42_RS14050 PF10502 Signal peptidase, peptidase S26 RR42_RS14055 PF03144 Elongation factor Tu domain 2 RR42_RS14055 PF00679 Elongation factor G C-terminus RR42_RS14055 PF00009 Elongation factor Tu GTP binding domain RR42_RS14055 PF06421 GTP-binding protein LepA C-terminus RR42_RS14065 PF13180 PDZ domain RR42_RS14080 PF08281 Sigma-70, region 4 RR42_RS14080 PF04542 Sigma-70 region 2 RR42_RS14090 PF00109 Beta-ketoacyl synthase, N-terminal domain RR42_RS14090 PF02801 Beta-ketoacyl synthase, C-terminal domain RR42_RS14095 PF00550 Phosphopantetheine attachment site RR42_RS14105 PF00698 Acyl transferase domain RR42_RS14110 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RR42_RS14110 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RR42_RS14115 PF02504 Fatty acid synthesis protein RR42_RS14120 PF01783 Ribosomal L32p protein family RR42_RS14125 PF02620 Large ribosomal RNA subunit accumulation protein YceD RR42_RS14130 PF02545 Maf-like protein RR42_RS14135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RR42_RS14140 PF06965 Na+/H+ antiporter 1 RR42_RS14140 PF01343 Peptidase family S49 RR42_RS14150 PF13419 Haloacid dehalogenase-like hydrolase RR42_RS14155 PF00849 RNA pseudouridylate synthase RR42_RS14155 PF01479 S4 domain RR42_RS14160 PF12111 Polyribonucleotide phosphorylase C terminal RR42_RS14160 PF10150 Ribonuclease E/G family RR42_RS14160 PF00575 S1 RNA binding domain RR42_RS14165 PF06463 Molybdenum Cofactor Synthesis C RR42_RS14165 PF04055 Radical SAM superfamily RR42_RS14170 PF12804 MobA-like NTP transferase domain RR42_RS14175 PF03454 MoeA C-terminal region (domain IV) RR42_RS14175 PF00994 Probable molybdopterin binding domain RR42_RS14175 PF03453 MoeA N-terminal region (domain I and II) RR42_RS14185 PF02646 RmuC family RR42_RS14190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR42_RS14190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR42_RS14200 PF02589 LUD domain RR42_RS14205 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RR42_RS14205 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RR42_RS14215 PF00037 4Fe-4S binding domain RR42_RS14215 PF11953 Domain of unknown function (DUF3470) RR42_RS14220 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS14240 PF14492 Elongation Factor G, domain II RR42_RS14240 PF03144 Elongation factor Tu domain 2 RR42_RS14240 PF00009 Elongation factor Tu GTP binding domain RR42_RS14240 PF00679 Elongation factor G C-terminus RR42_RS14240 PF03764 Elongation factor G, domain IV RR42_RS14245 PF01804 Penicillin amidase RR42_RS14260 PF00072 Response regulator receiver domain RR42_RS14260 PF00486 Transcriptional regulatory protein, C terminal RR42_RS14265 PF00672 HAMP domain RR42_RS14265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS14265 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS14275 PF00313 'Cold-shock' DNA-binding domain RR42_RS14280 PF01165 Ribosomal protein S21 RR42_RS14285 PF01810 LysE type translocator RR42_RS14295 PF00005 ABC transporter RR42_RS14300 PF01061 ABC-2 type transporter RR42_RS14310 PF00005 ABC transporter RR42_RS14310 PF02687 FtsX-like permease family RR42_RS14310 PF12704 MacB-like periplasmic core domain RR42_RS14320 PF01053 Cys/Met metabolism PLP-dependent enzyme RR42_RS14325 PF00156 Phosphoribosyl transferase domain RR42_RS14330 PF02674 Colicin V production protein RR42_RS14340 PF08245 Mur ligase middle domain RR42_RS14340 PF02875 Mur ligase family, glutamate ligase domain RR42_RS14345 PF01039 Carboxyl transferase domain RR42_RS14345 PF17848 Acetyl-coA carboxylase zinc finger domain RR42_RS14350 PF00290 Tryptophan synthase alpha chain RR42_RS14355 PF01555 DNA methylase RR42_RS14360 PF00291 Pyridoxal-phosphate dependent enzyme RR42_RS14365 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RR42_RS14370 PF01416 tRNA pseudouridine synthase RR42_RS14380 PF01118 Semialdehyde dehydrogenase, NAD binding domain RR42_RS14380 PF02774 Semialdehyde dehydrogenase, dimerisation domain RR42_RS14385 PF00180 Isocitrate/isopropylmalate dehydrogenase RR42_RS14390 PF00694 Aconitase C-terminal domain RR42_RS14400 PF00330 Aconitase family (aconitate hydratase) RR42_RS14405 PF00005 ABC transporter RR42_RS14410 PF00005 ABC transporter RR42_RS14410 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS14415 PF02653 Branched-chain amino acid transport system / permease component RR42_RS14415 PF11862 Domain of unknown function (DUF3382) RR42_RS14420 PF02653 Branched-chain amino acid transport system / permease component RR42_RS14425 PF13458 Periplasmic binding protein RR42_RS14430 PF00285 Citrate synthase, C-terminal domain RR42_RS14435 PF03937 Flavinator of succinate dehydrogenase RR42_RS14440 PF13085 2Fe-2S iron-sulfur cluster binding domain RR42_RS14445 PF00890 FAD binding domain RR42_RS14445 PF02910 Fumarate reductase flavoprotein C-term RR42_RS14450 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RR42_RS14460 PF07702 UTRA domain RR42_RS14460 PF00392 Bacterial regulatory proteins, gntR family RR42_RS14465 PF00056 lactate/malate dehydrogenase, NAD binding domain RR42_RS14465 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RR42_RS14475 PF00285 Citrate synthase, C-terminal domain RR42_RS14485 PF03972 MmgE/PrpD family RR42_RS14490 PF00330 Aconitase family (aconitate hydratase) RR42_RS14490 PF00694 Aconitase C-terminal domain RR42_RS14500 PF02390 Putative methyltransferase RR42_RS14505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR42_RS14555 PF00183 Hsp90 protein RR42_RS14555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS14560 PF00155 Aminotransferase class I and II RR42_RS14560 PF00392 Bacterial regulatory proteins, gntR family RR42_RS14570 PF02272 DHHA1 domain RR42_RS14570 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RR42_RS14570 PF01411 tRNA synthetases class II (A) RR42_RS14580 PF00892 EamA-like transporter family RR42_RS14595 PF00155 Aminotransferase class I and II RR42_RS14600 PF00043 Glutathione S-transferase, C-terminal domain RR42_RS14600 PF13417 Glutathione S-transferase, N-terminal domain RR42_RS14605 PF01810 LysE type translocator RR42_RS14610 PF02652 L-lactate permease RR42_RS14615 PF01850 PIN domain RR42_RS14620 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system RR42_RS14625 PF00491 Arginase family RR42_RS14630 PF07690 Major Facilitator Superfamily RR42_RS14635 PF00324 Amino acid permease RR42_RS14640 PF00221 Aromatic amino acid lyase RR42_RS14645 PF17392 Urocanase C-terminal domain RR42_RS14645 PF17391 Urocanase N-terminal domain RR42_RS14645 PF01175 Urocanase Rossmann-like domain RR42_RS14650 PF00664 ABC transporter transmembrane region RR42_RS14650 PF00005 ABC transporter RR42_RS14665 PF00521 DNA gyrase/topoisomerase IV, subunit A RR42_RS14670 PF01464 Transglycosylase SLT domain RR42_RS14675 PF01751 Toprim domain RR42_RS14675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS14675 PF00986 DNA gyrase B subunit, carboxyl terminus RR42_RS14675 PF00204 DNA gyrase B RR42_RS14685 PF00005 ABC transporter RR42_RS14685 PF16326 ABC transporter C-terminal domain RR42_RS14685 PF12848 ABC transporter RR42_RS14690 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS14695 PF03594 Benzoate membrane transport protein RR42_RS14705 PF00893 Small Multidrug Resistance protein RR42_RS14720 PF00270 DEAD/DEAH box helicase RR42_RS14720 PF00271 Helicase conserved C-terminal domain RR42_RS14725 PF03781 Sulfatase-modifying factor enzyme 1 RR42_RS14725 PF12867 DinB superfamily RR42_RS14730 PF10017 Histidine-specific methyltransferase, SAM-dependent RR42_RS14735 PF03741 Integral membrane protein TerC family RR42_RS14740 PF00303 Thymidylate synthase RR42_RS14745 PF00186 Dihydrofolate reductase RR42_RS14750 PF01523 Putative modulator of DNA gyrase RR42_RS14755 PF04751 Protein of unknown function (DUF615) RR42_RS14760 PF00994 Probable molybdopterin binding domain RR42_RS14770 PF00929 Exonuclease RR42_RS14775 PF01435 Peptidase family M48 RR42_RS14775 PF16491 CAAX prenyl protease N-terminal, five membrane helices RR42_RS14780 PF03193 RsgA GTPase RR42_RS14795 PF17954 Quercetinase C-terminal cupin domain RR42_RS14795 PF02678 Pirin RR42_RS14800 PF03466 LysR substrate binding domain RR42_RS14800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS14805 PF00749 tRNA synthetases class I (E and Q), catalytic domain RR42_RS14810 PF00271 Helicase conserved C-terminal domain RR42_RS14810 PF00270 DEAD/DEAH box helicase RR42_RS14825 PF15975 Flotillin RR42_RS14825 PF01145 SPFH domain / Band 7 family RR42_RS14830 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS14835 PF01144 Coenzyme A transferase RR42_RS14840 PF09339 IclR helix-turn-helix domain RR42_RS14840 PF01614 Bacterial transcriptional regulator RR42_RS14850 PF07690 Major Facilitator Superfamily RR42_RS14895 PF13180 PDZ domain RR42_RS14910 PF05698 Bacterial trigger factor protein (TF) C-terminus RR42_RS14930 PF02472 Biopolymer transport protein ExbD/TolR RR42_RS14935 PF01618 MotA/TolQ/ExbB proton channel family RR42_RS14965 PF04545 Sigma-70, region 4 RR42_RS14965 PF00140 Sigma-70 factor, region 1.2 RR42_RS14965 PF04539 Sigma-70 region 3 RR42_RS14965 PF03979 Sigma-70 factor, region 1.1 RR42_RS14965 PF04542 Sigma-70 region 2 RR42_RS14965 PF04546 Sigma-70, non-essential region RR42_RS14975 PF01807 CHC2 zinc finger RR42_RS14975 PF08278 DNA primase DnaG DnaB-binding RR42_RS14975 PF08275 DNA primase catalytic core, N-terminal domain RR42_RS14975 PF10410 DnaB-helicase binding domain of primase RR42_RS14980 PF09424 Yqey-like protein RR42_RS14985 PF01165 Ribosomal protein S21 RR42_RS14995 PF00814 Glycoprotease family RR42_RS15000 PF02649 Type I GTP cyclohydrolase folE2 RR42_RS15005 PF02780 Transketolase, C-terminal domain RR42_RS15005 PF02779 Transketolase, pyrimidine binding domain RR42_RS15005 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RR42_RS15010 PF00348 Polyprenyl synthetase RR42_RS15015 PF02609 Exonuclease VII small subunit RR42_RS15030 PF00581 Rhodanese-like domain RR42_RS15040 PF01738 Dienelactone hydrolase family RR42_RS15045 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS15050 PF01367 5'-3' exonuclease, C-terminal SAM fold RR42_RS15050 PF01612 3'-5' exonuclease RR42_RS15050 PF00476 DNA polymerase family A RR42_RS15050 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RR42_RS15055 PF03641 Possible lysine decarboxylase RR42_RS15065 PF01636 Phosphotransferase enzyme family RR42_RS15075 PF04909 Amidohydrolase RR42_RS15080 PF00392 Bacterial regulatory proteins, gntR family RR42_RS15080 PF07702 UTRA domain RR42_RS15085 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS15090 PF00580 UvrD/REP helicase N-terminal domain RR42_RS15090 PF13361 UvrD-like helicase C-terminal domain RR42_RS15095 PF08264 Anticodon-binding domain of tRNA RR42_RS15095 PF00133 tRNA synthetases class I (I, L, M and V) RR42_RS15095 PF10458 Valyl tRNA synthetase tRNA binding arm RR42_RS15100 PF00483 Nucleotidyl transferase RR42_RS15105 PF01206 Sulfurtransferase TusA RR42_RS15110 PF09297 NADH pyrophosphatase zinc ribbon domain RR42_RS15110 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RR42_RS15110 PF00293 NUDIX domain RR42_RS15115 PF01212 Beta-eliminating lyase RR42_RS15120 PF01361 Tautomerase enzyme RR42_RS15125 PF00596 Class II Aldolase and Adducin N-terminal domain RR42_RS15130 PF06779 Uncharacterised MFS-type transporter YbfB RR42_RS15135 PF03466 LysR substrate binding domain RR42_RS15135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS15140 PF01957 NfeD-like C-terminal, partner-binding RR42_RS15140 PF01972 Serine dehydrogenase proteinase RR42_RS15145 PF16200 C-terminal region of band_7 RR42_RS15145 PF01145 SPFH domain / Band 7 family RR42_RS15150 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RR42_RS15150 PF01411 tRNA synthetases class II (A) RR42_RS15150 PF02272 DHHA1 domain RR42_RS15155 PF02515 CoA-transferase family III RR42_RS15165 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS15170 PF02080 TrkA-C domain RR42_RS15170 PF03471 Transporter associated domain RR42_RS15170 PF00999 Sodium/hydrogen exchanger family RR42_RS15180 PF01970 Tripartite tricarboxylate transporter TctA family RR42_RS15185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS15185 PF03466 LysR substrate binding domain RR42_RS15190 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS15200 PF02567 Phenazine biosynthesis-like protein RR42_RS15210 PF04299 Putative FMN-binding domain RR42_RS15220 PF00749 tRNA synthetases class I (E and Q), catalytic domain RR42_RS15220 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RR42_RS15235 PF04264 YceI-like domain RR42_RS15250 PF07152 YaeQ protein RR42_RS15255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RR42_RS15280 PF13193 AMP-binding enzyme C-terminal domain RR42_RS15280 PF00501 AMP-binding enzyme RR42_RS15285 PF00085 Thioredoxin RR42_RS15295 PF01814 Hemerythrin HHE cation binding domain RR42_RS15305 PF00899 ThiF family RR42_RS15310 PF05170 AsmA family RR42_RS15320 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RR42_RS15320 PF01243 Pyridoxamine 5'-phosphate oxidase RR42_RS15335 PF01625 Peptide methionine sulfoxide reductase RR42_RS15345 PF13193 AMP-binding enzyme C-terminal domain RR42_RS15345 PF00501 AMP-binding enzyme RR42_RS15350 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS15350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS15350 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS15355 PF12697 Alpha/beta hydrolase family RR42_RS15365 PF01613 Flavin reductase like domain RR42_RS15375 PF01037 Lrp/AsnC ligand binding domain RR42_RS15380 PF04199 Putative cyclase RR42_RS15385 PF00266 Aminotransferase class-V RR42_RS15390 PF03301 Tryptophan 2,3-dioxygenase RR42_RS15395 PF09339 IclR helix-turn-helix domain RR42_RS15400 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS15400 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS15400 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS15405 PF00578 AhpC/TSA family RR42_RS15405 PF10417 C-terminal domain of 1-Cys peroxiredoxin RR42_RS15425 PF01594 AI-2E family transporter RR42_RS15430 PF00326 Prolyl oligopeptidase family RR42_RS15440 PF04143 Sulphur transport RR42_RS15445 PF06508 Queuosine biosynthesis protein QueC RR42_RS15455 PF00691 OmpA family RR42_RS15460 PF04052 TolB amino-terminal domain RR42_RS15460 PF07676 WD40-like Beta Propeller Repeat RR42_RS15470 PF02472 Biopolymer transport protein ExbD/TolR RR42_RS15475 PF01618 MotA/TolQ/ExbB proton channel family RR42_RS15480 PF03061 Thioesterase superfamily RR42_RS15485 PF00464 Serine hydroxymethyltransferase RR42_RS15490 PF03477 ATP cone domain RR42_RS15515 PF05567 Neisseria PilC beta-propeller domain RR42_RS15520 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor RR42_RS15520 PF07963 Prokaryotic N-terminal methylation motif RR42_RS15555 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RR42_RS15555 PF01872 RibD C-terminal domain RR42_RS15560 PF00677 Lumazine binding domain RR42_RS15565 PF00925 GTP cyclohydrolase II RR42_RS15565 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RR42_RS15570 PF00885 6,7-dimethyl-8-ribityllumazine synthase RR42_RS15575 PF01029 NusB family RR42_RS15580 PF00155 Aminotransferase class I and II RR42_RS15585 PF01464 Transglycosylase SLT domain RR42_RS15585 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RR42_RS15590 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RR42_RS15595 PF13193 AMP-binding enzyme C-terminal domain RR42_RS15595 PF00501 AMP-binding enzyme RR42_RS15625 PF02390 Putative methyltransferase RR42_RS15630 PF02673 Bacitracin resistance protein BacA RR42_RS15640 PF03692 Putative zinc- or iron-chelating domain RR42_RS15645 PF00440 Bacterial regulatory proteins, tetR family RR42_RS15645 PF08361 MAATS-type transcriptional repressor, C-terminal region RR42_RS15655 PF00873 AcrB/AcrD/AcrF family RR42_RS15665 PF01206 Sulfurtransferase TusA RR42_RS15665 PF00581 Rhodanese-like domain RR42_RS15670 PF02321 Outer membrane efflux protein RR42_RS15680 PF00534 Glycosyl transferases group 1 RR42_RS15680 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RR42_RS15685 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RR42_RS15690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RR42_RS15690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RR42_RS15690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RR42_RS15690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RR42_RS15695 PF13439 Glycosyltransferase Family 4 RR42_RS15695 PF00534 Glycosyl transferases group 1 RR42_RS15700 PF02397 Bacterial sugar transferase RR42_RS15705 PF13439 Glycosyltransferase Family 4 RR42_RS15705 PF00534 Glycosyl transferases group 1 RR42_RS15715 PF13439 Glycosyltransferase Family 4 RR42_RS15715 PF00534 Glycosyl transferases group 1 RR42_RS15735 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RR42_RS15740 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS15755 PF00132 Bacterial transferase hexapeptide (six repeats) RR42_RS15775 PF03102 NeuB family RR42_RS15775 PF08666 SAF domain RR42_RS15790 PF00202 Aminotransferase class-III RR42_RS15795 PF02348 Cytidylyltransferase RR42_RS15805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RR42_RS15810 PF02719 Polysaccharide biosynthesis protein RR42_RS15815 PF01370 NAD dependent epimerase/dehydratase family RR42_RS15820 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RR42_RS15820 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RR42_RS15820 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RR42_RS15825 PF02719 Polysaccharide biosynthesis protein RR42_RS15830 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RR42_RS15835 PF04321 RmlD substrate binding domain RR42_RS15840 PF16363 GDP-mannose 4,6 dehydratase RR42_RS15845 PF00149 Calcineurin-like phosphoesterase RR42_RS15850 PF01553 Acyltransferase RR42_RS15855 PF01979 Amidohydrolase family RR42_RS15860 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RR42_RS15860 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RR42_RS15865 PF00156 Phosphoribosyl transferase domain RR42_RS15870 PF03652 Holliday junction resolvase RR42_RS15875 PF02622 Uncharacterized ACR, COG1678 RR42_RS15880 PF01479 S4 domain RR42_RS15880 PF00849 RNA pseudouridylate synthase RR42_RS15885 PF03441 FAD binding domain of DNA photolyase RR42_RS15885 PF00875 DNA photolyase RR42_RS15895 PF02602 Uroporphyrinogen-III synthase HemD RR42_RS15900 PF03900 Porphobilinogen deaminase, C-terminal domain RR42_RS15900 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RR42_RS15905 PF00311 Phosphoenolpyruvate carboxylase RR42_RS15925 PF00206 Lyase RR42_RS15925 PF14698 Argininosuccinate lyase C-terminal RR42_RS15940 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RR42_RS15940 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RR42_RS15940 PF01276 Orn/Lys/Arg decarboxylase, major domain RR42_RS15945 PF00692 dUTPase RR42_RS15950 PF02634 FdhD/NarQ family RR42_RS15955 PF00080 Copper/zinc superoxide dismutase (SODC) RR42_RS15975 PF13247 4Fe-4S dicluster domain RR42_RS15980 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RR42_RS15980 PF00384 Molybdopterin oxidoreductase RR42_RS15980 PF01568 Molydopterin dinucleotide binding domain RR42_RS16010 PF10609 NUBPL iron-transfer P-loop NTPase RR42_RS16015 PF00691 OmpA family RR42_RS16015 PF05736 OprF membrane domain RR42_RS16020 PF09334 tRNA synthetases class I (M) RR42_RS16020 PF01588 Putative tRNA binding domain RR42_RS16025 PF00916 Sulfate permease family RR42_RS16025 PF01740 STAS domain RR42_RS16035 PF04357 TamB, inner membrane protein subunit of TAM complex RR42_RS16040 PF01103 Surface antigen RR42_RS16040 PF17243 POTRA domain TamA domain 1 RR42_RS16040 PF07244 Surface antigen variable number repeat RR42_RS16050 PF02616 Segregation and condensation protein ScpA RR42_RS16055 PF02569 Pantoate-beta-alanine ligase RR42_RS16075 PF07685 CobB/CobQ-like glutamine amidotransferase domain RR42_RS16075 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RR42_RS16080 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RR42_RS16085 PF03186 CobD/Cbib protein RR42_RS16085 PF17113 Regulatory signalling modulator protein AmpE RR42_RS16090 PF00155 Aminotransferase class I and II RR42_RS16095 PF01497 Periplasmic binding protein RR42_RS16105 PF13276 HTH-like domain RR42_RS16105 PF00665 Integrase core domain RR42_RS16105 PF13333 Integrase core domain RR42_RS16115 PF02654 Cobalamin-5-phosphate synthase RR42_RS16120 PF02277 Phosphoribosyltransferase RR42_RS16125 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RR42_RS16125 PF12557 Cob(I)alamin adenosyltransferase N terminal RR42_RS16130 PF00005 ABC transporter RR42_RS16135 PF01032 FecCD transport family RR42_RS16140 PF00593 TonB dependent receptor RR42_RS16140 PF07715 TonB-dependent Receptor Plug Domain RR42_RS16160 PF01925 Sulfite exporter TauE/SafE RR42_RS16170 PF00501 AMP-binding enzyme RR42_RS16170 PF13193 AMP-binding enzyme C-terminal domain RR42_RS16175 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS16180 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS16190 PF00392 Bacterial regulatory proteins, gntR family RR42_RS16190 PF07729 FCD domain RR42_RS16195 PF13419 Haloacid dehalogenase-like hydrolase RR42_RS16200 PF01790 Prolipoprotein diacylglyceryl transferase RR42_RS16205 PF03466 LysR substrate binding domain RR42_RS16205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS16210 PF00920 Dehydratase family RR42_RS16220 PF04364 DNA polymerase III chi subunit, HolC RR42_RS16225 PF00883 Cytosol aminopeptidase family, catalytic domain RR42_RS16225 PF02789 Cytosol aminopeptidase family, N-terminal domain RR42_RS16235 PF03739 Lipopolysaccharide export system permease LptF/LptG RR42_RS16245 PF10414 Sirohaem synthase dimerisation region RR42_RS16245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RR42_RS16245 PF14824 Sirohaem biosynthesis protein central RR42_RS16250 PF00009 Elongation factor Tu GTP binding domain RR42_RS16255 PF01507 Phosphoadenosine phosphosulfate reductase family RR42_RS16260 PF01507 Phosphoadenosine phosphosulfate reductase family RR42_RS16270 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RR42_RS16270 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RR42_RS16275 PF01925 Sulfite exporter TauE/SafE RR42_RS16280 PF03466 LysR substrate binding domain RR42_RS16280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS16285 PF05175 Methyltransferase small domain RR42_RS16300 PF05736 OprF membrane domain RR42_RS16300 PF00691 OmpA family RR42_RS16320 PF06715 Gp5 C-terminal repeat (3 copies) RR42_RS16320 PF04717 Type VI secretion system, phage-baseplate injector RR42_RS16350 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ RR42_RS16355 PF13609 Gram-negative porin RR42_RS16360 PF05598 Transposase domain (DUF772) RR42_RS16360 PF01609 Transposase DDE domain RR42_RS16365 PF00106 short chain dehydrogenase RR42_RS16370 PF00005 ABC transporter RR42_RS16385 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS16390 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS16395 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS16405 PF04115 Ureidoglycolate lyase RR42_RS16410 PF03466 LysR substrate binding domain RR42_RS16410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS16415 PF00440 Bacterial regulatory proteins, tetR family RR42_RS16415 PF16859 Tetracyclin repressor-like, C-terminal domain RR42_RS16420 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS16425 PF01209 ubiE/COQ5 methyltransferase family RR42_RS16430 PF05598 Transposase domain (DUF772) RR42_RS16430 PF01609 Transposase DDE domain RR42_RS16435 PF16363 GDP-mannose 4,6 dehydratase RR42_RS16440 PF00449 Urease alpha-subunit, N-terminal domain RR42_RS16440 PF01979 Amidohydrolase family RR42_RS16445 PF00005 ABC transporter RR42_RS16450 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS16470 PF00155 Aminotransferase class I and II RR42_RS16470 PF00392 Bacterial regulatory proteins, gntR family RR42_RS16475 PF00679 Elongation factor G C-terminus RR42_RS16475 PF03764 Elongation factor G, domain IV RR42_RS16475 PF00009 Elongation factor Tu GTP binding domain RR42_RS16475 PF03144 Elongation factor Tu domain 2 RR42_RS16475 PF14492 Elongation Factor G, domain II RR42_RS16480 PF00563 EAL domain RR42_RS16480 PF00990 Diguanylate cyclase, GGDEF domain RR42_RS16480 PF03707 Bacterial signalling protein N terminal repeat RR42_RS16490 PF03466 LysR substrate binding domain RR42_RS16490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS16500 PF00274 Fructose-bisphosphate aldolase class-I RR42_RS16505 PF00211 Adenylate and Guanylate cyclase catalytic domain RR42_RS16505 PF00672 HAMP domain RR42_RS16520 PF08281 Sigma-70, region 4 RR42_RS16520 PF04542 Sigma-70 region 2 RR42_RS16540 PF00905 Penicillin binding protein transpeptidase domain RR42_RS16540 PF00912 Transglycosylase RR42_RS16540 PF17092 Penicillin-binding protein OB-like domain RR42_RS16550 PF00141 Peroxidase RR42_RS16555 PF00857 Isochorismatase family RR42_RS16560 PF02515 CoA-transferase family III RR42_RS16565 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS16570 PF03060 Nitronate monooxygenase RR42_RS16575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS16575 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS16575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS16585 PF04199 Putative cyclase RR42_RS16595 PF00108 Thiolase, N-terminal domain RR42_RS16595 PF02803 Thiolase, C-terminal domain RR42_RS16600 PF13193 AMP-binding enzyme C-terminal domain RR42_RS16600 PF00501 AMP-binding enzyme RR42_RS16640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS16640 PF03466 LysR substrate binding domain RR42_RS16645 PF01118 Semialdehyde dehydrogenase, NAD binding domain RR42_RS16670 PF00034 Cytochrome c RR42_RS16690 PF07237 Protein of unknown function (DUF1428) RR42_RS16695 PF03795 YCII-related domain RR42_RS16705 PF00561 alpha/beta hydrolase fold RR42_RS16710 PF01042 Endoribonuclease L-PSP RR42_RS16725 PF04116 Fatty acid hydroxylase superfamily RR42_RS16730 PF07694 5TMR of 5TMR-LYT RR42_RS16730 PF06580 Histidine kinase RR42_RS16735 PF04397 LytTr DNA-binding domain RR42_RS16735 PF00072 Response regulator receiver domain RR42_RS16750 PF04309 Glycerol-3-phosphate responsive antiterminator RR42_RS16755 PF01565 FAD binding domain RR42_RS16755 PF02913 FAD linked oxidases, C-terminal domain RR42_RS16760 PF01266 FAD dependent oxidoreductase RR42_RS16760 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RR42_RS16765 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RR42_RS16765 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RR42_RS16770 PF07690 Major Facilitator Superfamily RR42_RS16780 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RR42_RS16780 PF03625 Domain of unknown function DUF302 RR42_RS16785 PF01566 Natural resistance-associated macrophage protein RR42_RS16790 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS16795 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RR42_RS16795 PF02770 Acyl-CoA dehydrogenase, middle domain RR42_RS16795 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RR42_RS16810 PF13452 N-terminal half of MaoC dehydratase RR42_RS16820 PF00501 AMP-binding enzyme RR42_RS16820 PF13193 AMP-binding enzyme C-terminal domain RR42_RS16825 PF12833 Helix-turn-helix domain RR42_RS16835 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RR42_RS16835 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RR42_RS16850 PF16701 Adenylate cyclase regulatory domain RR42_RS16850 PF00211 Adenylate and Guanylate cyclase catalytic domain RR42_RS16885 PF05567 Neisseria PilC beta-propeller domain RR42_RS16900 PF01979 Amidohydrolase family RR42_RS16905 PF01979 Amidohydrolase family RR42_RS16910 PF05962 HutD RR42_RS16915 PF17391 Urocanase N-terminal domain RR42_RS16915 PF01175 Urocanase Rossmann-like domain RR42_RS16915 PF17392 Urocanase C-terminal domain RR42_RS16920 PF00221 Aromatic amino acid lyase RR42_RS16925 PF00392 Bacterial regulatory proteins, gntR family RR42_RS16925 PF07702 UTRA domain RR42_RS16930 PF00005 ABC transporter RR42_RS16935 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS16940 PF16868 NMT1-like family RR42_RS16950 PF00111 2Fe-2S iron-sulfur cluster binding domain RR42_RS16950 PF00970 Oxidoreductase FAD-binding domain RR42_RS16950 PF00175 Oxidoreductase NAD-binding domain RR42_RS16955 PF00202 Aminotransferase class-III RR42_RS16960 PF00005 ABC transporter RR42_RS16965 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS16965 PF00005 ABC transporter RR42_RS16970 PF02653 Branched-chain amino acid transport system / permease component RR42_RS16970 PF11862 Domain of unknown function (DUF3382) RR42_RS16975 PF02653 Branched-chain amino acid transport system / permease component RR42_RS16980 PF13458 Periplasmic binding protein RR42_RS16985 PF02401 LytB protein RR42_RS16990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RR42_RS16995 PF04002 RadC-like JAB domain RR42_RS17000 PF00830 Ribosomal L28 family RR42_RS17005 PF00471 Ribosomal protein L33 RR42_RS17010 PF02910 Fumarate reductase flavoprotein C-term RR42_RS17010 PF00890 FAD binding domain RR42_RS17015 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RR42_RS17015 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RR42_RS17020 PF02445 Quinolinate synthetase A protein RR42_RS17030 PF00924 Mechanosensitive ion channel RR42_RS17040 PF00550 Phosphopantetheine attachment site RR42_RS17040 PF00501 AMP-binding enzyme RR42_RS17040 PF13193 AMP-binding enzyme C-terminal domain RR42_RS17040 PF00668 Condensation domain RR42_RS17040 PF00975 Thioesterase domain RR42_RS17045 PF01029 NusB family RR42_RS17045 PF01189 16S rRNA methyltransferase RsmB/F RR42_RS17050 PF00551 Formyl transferase RR42_RS17055 PF00072 Response regulator receiver domain RR42_RS17055 PF00196 Bacterial regulatory proteins, luxR family RR42_RS17060 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS17060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS17060 PF00072 Response regulator receiver domain RR42_RS17060 PF00672 HAMP domain RR42_RS17060 PF01627 Hpt domain RR42_RS17065 PF06574 FAD synthetase RR42_RS17065 PF01687 Riboflavin kinase RR42_RS17070 PF08264 Anticodon-binding domain of tRNA RR42_RS17070 PF00133 tRNA synthetases class I (I, L, M and V) RR42_RS17070 PF06827 Zinc finger found in FPG and IleRS RR42_RS17075 PF01252 Signal peptidase (SPase) II RR42_RS17080 PF04127 DNA / pantothenate metabolism flavoprotein RR42_RS17080 PF02441 Flavoprotein RR42_RS17085 PF00296 Luciferase-like monooxygenase RR42_RS17090 PF00692 dUTPase RR42_RS17100 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS17105 PF10431 C-terminal, D2-small domain, of ClpB protein RR42_RS17105 PF02861 Clp amino terminal domain, pathogenicity island component RR42_RS17105 PF17871 AAA lid domain RR42_RS17105 PF07724 AAA domain (Cdc48 subfamily) RR42_RS17105 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS17110 PF02617 ATP-dependent Clp protease adaptor protein ClpS RR42_RS17115 PF00313 'Cold-shock' DNA-binding domain RR42_RS17135 PF00180 Isocitrate/isopropylmalate dehydrogenase RR42_RS17140 PF00849 RNA pseudouridylate synthase RR42_RS17155 PF04461 Protein of unknown function (DUF520) RR42_RS17160 PF01565 FAD binding domain RR42_RS17160 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RR42_RS17165 PF06865 Pyrimidine/purine nucleoside phosphorylase RR42_RS17170 PF00764 Arginosuccinate synthase RR42_RS17175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RR42_RS17175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RR42_RS17185 PF01649 Ribosomal protein S20 RR42_RS17190 PF03023 Lipid II flippase MurJ RR42_RS17195 PF13369 Transglutaminase-like superfamily RR42_RS17200 PF09335 SNARE associated Golgi protein RR42_RS17205 PF08676 MutL C terminal dimerisation domain RR42_RS17205 PF01119 DNA mismatch repair protein, C-terminal domain RR42_RS17215 PF00583 Acetyltransferase (GNAT) family RR42_RS17220 PF02769 AIR synthase related protein, C-terminal domain RR42_RS17220 PF00586 AIR synthase related protein, N-terminal domain RR42_RS17225 PF00308 Bacterial dnaA protein RR42_RS17235 PF12626 Polymerase A arginine-rich C-terminus RR42_RS17235 PF12627 Probable RNA and SrmB- binding site of polymerase A RR42_RS17235 PF01743 Poly A polymerase head domain RR42_RS17240 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RR42_RS17250 PF02548 Ketopantoate hydroxymethyltransferase RR42_RS17255 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS17260 PF00005 ABC transporter RR42_RS17260 PF02361 Cobalt transport protein RR42_RS17265 PF04715 Anthranilate synthase component I, N terminal region RR42_RS17265 PF00117 Glutamine amidotransferase class-I RR42_RS17265 PF00425 chorismate binding enzyme RR42_RS17270 PF00226 DnaJ domain RR42_RS17270 PF00684 DnaJ central domain RR42_RS17270 PF01556 DnaJ C terminal domain RR42_RS17275 PF00012 Hsp70 protein RR42_RS17280 PF01923 Cobalamin adenosyltransferase RR42_RS17285 PF02913 FAD linked oxidases, C-terminal domain RR42_RS17285 PF01565 FAD binding domain RR42_RS17290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS17290 PF03466 LysR substrate binding domain RR42_RS17295 PF00583 Acetyltransferase (GNAT) family RR42_RS17300 PF02913 FAD linked oxidases, C-terminal domain RR42_RS17300 PF01565 FAD binding domain RR42_RS17305 PF00027 Cyclic nucleotide-binding domain RR42_RS17305 PF00520 Ion transport protein RR42_RS17310 PF01565 FAD binding domain RR42_RS17315 PF02754 Cysteine-rich domain RR42_RS17315 PF13183 4Fe-4S dicluster domain RR42_RS17320 PF03788 LrgA family RR42_RS17325 PF04172 LrgB-like family RR42_RS17340 PF00255 Glutathione peroxidase RR42_RS17345 PF00437 Type II/IV secretion system protein RR42_RS17350 PF00437 Type II/IV secretion system protein RR42_RS17355 PF01168 Alanine racemase, N-terminal domain RR42_RS17360 PF14748 Pyrroline-5-carboxylate reductase dimerisation RR42_RS17360 PF03807 NADP oxidoreductase coenzyme F420-dependent RR42_RS17365 PF01040 UbiA prenyltransferase family RR42_RS17370 PF00210 Ferritin-like domain RR42_RS17380 PF06628 Catalase-related immune-responsive RR42_RS17380 PF00199 Catalase RR42_RS17385 PF03466 LysR substrate binding domain RR42_RS17385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS17390 PF00270 DEAD/DEAH box helicase RR42_RS17390 PF00271 Helicase conserved C-terminal domain RR42_RS17390 PF17191 RecG wedge domain RR42_RS17395 PF02547 Queuosine biosynthesis protein RR42_RS17400 PF01702 Queuine tRNA-ribosyltransferase RR42_RS17405 PF02699 Preprotein translocase subunit RR42_RS17410 PF13721 SecD export protein N-terminal TM region RR42_RS17410 PF02355 Protein export membrane protein RR42_RS17410 PF07549 SecD/SecF GG Motif RR42_RS17415 PF02355 Protein export membrane protein RR42_RS17415 PF07549 SecD/SecF GG Motif RR42_RS17420 PF02954 Bacterial regulatory protein, Fis family RR42_RS17420 PF00072 Response regulator receiver domain RR42_RS17420 PF00158 Sigma-54 interaction domain RR42_RS17425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS17425 PF00072 Response regulator receiver domain RR42_RS17430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS17430 PF00989 PAS fold RR42_RS17430 PF08447 PAS fold RR42_RS17430 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS17455 PF00206 Lyase RR42_RS17455 PF08328 Adenylosuccinate lyase C-terminal RR42_RS17460 PF13417 Glutathione S-transferase, N-terminal domain RR42_RS17460 PF00043 Glutathione S-transferase, C-terminal domain RR42_RS17470 PF00293 NUDIX domain RR42_RS17470 PF13344 Haloacid dehalogenase-like hydrolase RR42_RS17475 PF00701 Dihydrodipicolinate synthetase family RR42_RS17490 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RR42_RS17490 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RR42_RS17495 PF02261 Aspartate decarboxylase RR42_RS17500 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RR42_RS17505 PF02233 NAD(P) transhydrogenase beta subunit RR42_RS17510 PF00072 Response regulator receiver domain RR42_RS17515 PF02926 THUMP domain RR42_RS17515 PF01170 Putative RNA methylase family UPF0020 RR42_RS17525 PF03653 Uncharacterised protein family (UPF0093) RR42_RS17530 PF00171 Aldehyde dehydrogenase family RR42_RS17535 PF06144 DNA polymerase III, delta subunit RR42_RS17535 PF14840 Processivity clamp loader gamma complex DNA pol III C-term RR42_RS17540 PF04390 Lipopolysaccharide-assembly RR42_RS17545 PF00133 tRNA synthetases class I (I, L, M and V) RR42_RS17545 PF13603 Leucyl-tRNA synthetase, Domain 2 RR42_RS17545 PF08264 Anticodon-binding domain of tRNA RR42_RS17545 PF09334 tRNA synthetases class I (M) RR42_RS17550 PF05173 Dihydrodipicolinate reductase, C-terminus RR42_RS17550 PF01113 Dihydrodipicolinate reductase, N-terminus RR42_RS17555 PF04355 SmpA / OmlA family RR42_RS17560 PF01475 Ferric uptake regulator family RR42_RS17565 PF03466 LysR substrate binding domain RR42_RS17565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS17570 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RR42_RS17570 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RR42_RS17575 PF00456 Transketolase, thiamine diphosphate binding domain RR42_RS17575 PF02780 Transketolase, C-terminal domain RR42_RS17575 PF02779 Transketolase, pyrimidine binding domain RR42_RS17580 PF17284 Spermidine synthase tetramerisation domain RR42_RS17590 PF04452 RNA methyltransferase RR42_RS17605 PF00545 ribonuclease RR42_RS17610 PF03949 Malic enzyme, NAD binding domain RR42_RS17610 PF00390 Malic enzyme, N-terminal domain RR42_RS17610 PF01515 Phosphate acetyl/butaryl transferase RR42_RS17615 PF00586 AIR synthase related protein, N-terminal domain RR42_RS17615 PF02769 AIR synthase related protein, C-terminal domain RR42_RS17620 PF04608 Phosphatidylglycerophosphatase A RR42_RS17625 PF02464 Competence-damaged protein RR42_RS17625 PF18146 Damage-inducible protein CinA KH domain RR42_RS17625 PF00994 Probable molybdopterin binding domain RR42_RS17630 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RR42_RS17635 PF01544 CorA-like Mg2+ transporter protein RR42_RS17640 PF00912 Transglycosylase RR42_RS17645 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RR42_RS17645 PF01488 Shikimate / quinate 5-dehydrogenase RR42_RS17645 PF08501 Shikimate dehydrogenase substrate binding domain RR42_RS17655 PF00773 RNB domain RR42_RS17665 PF04345 Chorismate lyase RR42_RS17675 PF02875 Mur ligase family, glutamate ligase domain RR42_RS17675 PF01225 Mur ligase family, catalytic domain RR42_RS17675 PF08245 Mur ligase middle domain RR42_RS17685 PF08534 Redoxin RR42_RS17690 PF01220 Dehydroquinase class II RR42_RS17695 PF00364 Biotin-requiring enzyme RR42_RS17700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR42_RS17700 PF02785 Biotin carboxylase C-terminal domain RR42_RS17700 PF00289 Biotin carboxylase, N-terminal domain RR42_RS17715 PF08534 Redoxin RR42_RS17720 PF00294 pfkB family carbohydrate kinase RR42_RS17750 PF07690 Major Facilitator Superfamily RR42_RS17755 PF01979 Amidohydrolase family RR42_RS17760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS17760 PF03466 LysR substrate binding domain RR42_RS17765 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS17770 PF07715 TonB-dependent Receptor Plug Domain RR42_RS17770 PF00593 TonB dependent receptor RR42_RS17775 PF13640 2OG-Fe(II) oxygenase superfamily RR42_RS17775 PF18331 PKHD-type hydroxylase C-terminal domain RR42_RS17780 PF03466 LysR substrate binding domain RR42_RS17780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS17795 PF00248 Aldo/keto reductase family RR42_RS17800 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS17800 PF00403 Heavy-metal-associated domain RR42_RS17800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RR42_RS17820 PF04381 Putative exonuclease, RdgC RR42_RS17830 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS17835 PF00067 Cytochrome P450 RR42_RS17840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS17840 PF03466 LysR substrate binding domain RR42_RS17855 PF00268 Ribonucleotide reductase, small chain RR42_RS17860 PF00317 Ribonucleotide reductase, all-alpha domain RR42_RS17860 PF02867 Ribonucleotide reductase, barrel domain RR42_RS17860 PF03477 ATP cone domain RR42_RS17865 PF01510 N-acetylmuramoyl-L-alanine amidase RR42_RS17870 PF00158 Sigma-54 interaction domain RR42_RS17870 PF02954 Bacterial regulatory protein, Fis family RR42_RS17870 PF00072 Response regulator receiver domain RR42_RS17875 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS17875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS17885 PF01578 Cytochrome C assembly protein RR42_RS17890 PF00448 SRP54-type protein, GTPase domain RR42_RS17890 PF02881 SRP54-type protein, helical bundle domain RR42_RS17890 PF02978 Signal peptide binding domain RR42_RS17895 PF00156 Phosphoribosyl transferase domain RR42_RS17910 PF12852 Cupin RR42_RS17910 PF12833 Helix-turn-helix domain RR42_RS17920 PF01464 Transglycosylase SLT domain RR42_RS17920 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RR42_RS17925 PF04073 Aminoacyl-tRNA editing domain RR42_RS17925 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RR42_RS17925 PF03129 Anticodon binding domain RR42_RS17930 PF00293 NUDIX domain RR42_RS17940 PF00696 Amino acid kinase family RR42_RS17940 PF01472 PUA domain RR42_RS17945 PF01018 GTP1/OBG RR42_RS17945 PF01926 50S ribosome-binding GTPase RR42_RS17950 PF01016 Ribosomal L27 protein RR42_RS17955 PF00829 Ribosomal prokaryotic L21 protein RR42_RS17960 PF00348 Polyprenyl synthetase RR42_RS17980 PF00437 Type II/IV secretion system protein RR42_RS17980 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RR42_RS17985 PF00482 Type II secretion system (T2SS), protein F RR42_RS17990 PF01478 Type IV leader peptidase family RR42_RS17990 PF06750 Bacterial Peptidase A24 N-terminal domain RR42_RS17995 PF01121 Dephospho-CoA kinase RR42_RS18000 PF07072 Cell division protein RR42_RS18005 PF03884 DNA gyrase inhibitor YacG RR42_RS18010 PF00293 NUDIX domain RR42_RS18020 PF01960 ArgJ family RR42_RS18025 PF07516 SecA Wing and Scaffold domain RR42_RS18025 PF01043 SecA preprotein cross-linking domain RR42_RS18025 PF07517 SecA DEAD-like domain RR42_RS18025 PF02810 SEC-C motif RR42_RS18030 PF01551 Peptidase family M23 RR42_RS18040 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RR42_RS18045 PF08534 Redoxin RR42_RS18050 PF12327 FtsZ family, C-terminal domain RR42_RS18050 PF00091 Tubulin/FtsZ family, GTPase domain RR42_RS18055 PF02491 SHS2 domain inserted in FTSA RR42_RS18060 PF08478 POTRA domain, FtsQ-type RR42_RS18060 PF03799 Cell division protein FtsQ RR42_RS18065 PF07478 D-ala D-ala ligase C-terminus RR42_RS18065 PF01820 D-ala D-ala ligase N-terminus RR42_RS18070 PF01225 Mur ligase family, catalytic domain RR42_RS18070 PF02875 Mur ligase family, glutamate ligase domain RR42_RS18070 PF08245 Mur ligase middle domain RR42_RS18075 PF04101 Glycosyltransferase family 28 C-terminal domain RR42_RS18075 PF03033 Glycosyltransferase family 28 N-terminal domain RR42_RS18080 PF01098 Cell cycle protein RR42_RS18085 PF08245 Mur ligase middle domain RR42_RS18085 PF02875 Mur ligase family, glutamate ligase domain RR42_RS18090 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RR42_RS18090 PF00953 Glycosyl transferase family 4 RR42_RS18095 PF01225 Mur ligase family, catalytic domain RR42_RS18095 PF02875 Mur ligase family, glutamate ligase domain RR42_RS18095 PF08245 Mur ligase middle domain RR42_RS18100 PF08245 Mur ligase middle domain RR42_RS18100 PF02875 Mur ligase family, glutamate ligase domain RR42_RS18105 PF00905 Penicillin binding protein transpeptidase domain RR42_RS18105 PF03717 Penicillin-binding Protein dimerisation domain RR42_RS18110 PF04999 Cell division protein FtsL RR42_RS18115 PF01795 MraW methylase family RR42_RS18120 PF02381 MraZ protein, putative antitoxin-like RR42_RS18125 PF03232 Ubiquinone biosynthesis protein COQ7 RR42_RS18130 PF13609 Gram-negative porin RR42_RS18135 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS18150 PF13193 AMP-binding enzyme C-terminal domain RR42_RS18150 PF00501 AMP-binding enzyme RR42_RS18160 PF13193 AMP-binding enzyme C-terminal domain RR42_RS18160 PF00501 AMP-binding enzyme RR42_RS18165 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR42_RS18165 PF02785 Biotin carboxylase C-terminal domain RR42_RS18165 PF00289 Biotin carboxylase, N-terminal domain RR42_RS18165 PF00364 Biotin-requiring enzyme RR42_RS18170 PF13458 Periplasmic binding protein RR42_RS18180 PF00384 Molybdopterin oxidoreductase RR42_RS18180 PF01568 Molydopterin dinucleotide binding domain RR42_RS18180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RR42_RS18190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS18190 PF00005 ABC transporter RR42_RS18195 PF00005 ABC transporter RR42_RS18195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RR42_RS18200 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS18200 PF12911 N-terminal TM domain of oligopeptide transport permease C RR42_RS18205 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS18210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR42_RS18215 PF01546 Peptidase family M20/M25/M40 RR42_RS18215 PF07687 Peptidase dimerisation domain RR42_RS18250 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS18255 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS18260 PF03061 Thioesterase superfamily RR42_RS18265 PF00501 AMP-binding enzyme RR42_RS18265 PF14535 AMP-binding enzyme C-terminal domain RR42_RS18280 PF04379 ApaG domain RR42_RS18285 PF00834 Ribulose-phosphate 3 epimerase family RR42_RS18290 PF13419 Haloacid dehalogenase-like hydrolase RR42_RS18295 PF00425 chorismate binding enzyme RR42_RS18295 PF04715 Anthranilate synthase component I, N terminal region RR42_RS18300 PF00117 Glutamine amidotransferase class-I RR42_RS18305 PF02885 Glycosyl transferase family, helical bundle domain RR42_RS18305 PF00591 Glycosyl transferase family, a/b domain RR42_RS18310 PF00218 Indole-3-glycerol phosphate synthase RR42_RS18320 PF03167 Uracil DNA glycosylase superfamily RR42_RS18325 PF00708 Acylphosphatase RR42_RS18335 PF00005 ABC transporter RR42_RS18340 PF12805 FUSC-like inner membrane protein yccS RR42_RS18350 PF08240 Alcohol dehydrogenase GroES-like domain RR42_RS18350 PF00107 Zinc-binding dehydrogenase RR42_RS18355 PF13098 Thioredoxin-like domain RR42_RS18355 PF10411 Disulfide bond isomerase protein N-terminus RR42_RS18360 PF01494 FAD binding domain RR42_RS18365 PF06071 Protein of unknown function (DUF933) RR42_RS18365 PF01926 50S ribosome-binding GTPase RR42_RS18370 PF13356 Arm DNA-binding domain RR42_RS18370 PF00589 Phage integrase family RR42_RS18370 PF14659 Phage integrase, N-terminal SAM-like domain RR42_RS18455 PF01048 Phosphorylase superfamily RR42_RS18465 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RR42_RS18465 PF01488 Shikimate / quinate 5-dehydrogenase RR42_RS18465 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RR42_RS18470 PF03462 PCRF domain RR42_RS18470 PF00472 RF-1 domain RR42_RS18480 PF17827 PrmC N-terminal domain RR42_RS18480 PF05175 Methyltransferase small domain RR42_RS18485 PF00462 Glutaredoxin RR42_RS18490 PF02441 Flavoprotein RR42_RS18500 PF00171 Aldehyde dehydrogenase family RR42_RS18510 PF13404 AsnC-type helix-turn-helix domain RR42_RS18510 PF01037 Lrp/AsnC ligand binding domain RR42_RS18515 PF01113 Dihydrodipicolinate reductase, N-terminus RR42_RS18515 PF05173 Dihydrodipicolinate reductase, C-terminus RR42_RS18530 PF00654 Voltage gated chloride channel RR42_RS18535 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS18540 PF13193 AMP-binding enzyme C-terminal domain RR42_RS18540 PF00501 AMP-binding enzyme RR42_RS18555 PF01638 HxlR-like helix-turn-helix RR42_RS18565 PF00149 Calcineurin-like phosphoesterase RR42_RS18575 PF00005 ABC transporter RR42_RS18575 PF12848 ABC transporter RR42_RS18580 PF07729 FCD domain RR42_RS18580 PF00392 Bacterial regulatory proteins, gntR family RR42_RS18585 PF00920 Dehydratase family RR42_RS18590 PF00005 ABC transporter RR42_RS18590 PF17912 MalK OB fold domain RR42_RS18590 PF03459 TOBE domain RR42_RS18600 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS18605 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS18615 PF01863 Protein of unknown function DUF45 RR42_RS18625 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS18630 PF03466 LysR substrate binding domain RR42_RS18630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS18650 PF13356 Arm DNA-binding domain RR42_RS18650 PF00589 Phage integrase family RR42_RS18665 PF07728 AAA domain (dynein-related subfamily) RR42_RS18665 PF12102 Domain of unknown function (DUF3578) RR42_RS18675 PF18766 SWI2/SNF2 ATPase RR42_RS18675 PF11867 Domain of unknown function (DUF3387) RR42_RS18675 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RR42_RS18685 PF12161 HsdM N-terminal domain RR42_RS18685 PF02384 N-6 DNA Methylase RR42_RS18710 PF09588 YqaJ-like viral recombinase domain RR42_RS18760 PF13361 UvrD-like helicase C-terminal domain RR42_RS18760 PF00580 UvrD/REP helicase N-terminal domain RR42_RS18805 PF04386 Stringent starvation protein B RR42_RS18810 PF02798 Glutathione S-transferase, N-terminal domain RR42_RS18810 PF00043 Glutathione S-transferase, C-terminal domain RR42_RS18815 PF02167 Cytochrome C1 family RR42_RS18820 PF00032 Cytochrome b(C-terminal)/b6/petD RR42_RS18820 PF00033 Cytochrome b/b6/petB RR42_RS18825 PF00355 Rieske [2Fe-2S] domain RR42_RS18825 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RR42_RS18830 PF01741 Large-conductance mechanosensitive channel, MscL RR42_RS18835 PF01784 NIF3 (NGG1p interacting factor 3) RR42_RS18840 PF13180 PDZ domain RR42_RS18840 PF17820 PDZ domain RR42_RS18845 PF13609 Gram-negative porin RR42_RS18850 PF00902 Sec-independent protein translocase protein (TatC) RR42_RS18855 PF02416 mttA/Hcf106 family RR42_RS18860 PF02416 mttA/Hcf106 family RR42_RS18875 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RR42_RS18880 PF01502 Phosphoribosyl-AMP cyclohydrolase RR42_RS18885 PF00977 Histidine biosynthesis protein RR42_RS18890 PF00977 Histidine biosynthesis protein RR42_RS18895 PF00117 Glutamine amidotransferase class-I RR42_RS18900 PF01914 MarC family integral membrane protein RR42_RS18905 PF00475 Imidazoleglycerol-phosphate dehydratase RR42_RS18910 PF00155 Aminotransferase class I and II RR42_RS18915 PF00815 Histidinol dehydrogenase RR42_RS18920 PF01634 ATP phosphoribosyltransferase RR42_RS18925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RR42_RS18935 PF01061 ABC-2 type transporter RR42_RS18940 PF00005 ABC transporter RR42_RS18955 PF04333 MlaA lipoprotein RR42_RS18960 PF02470 MlaD protein RR42_RS18965 PF02405 Permease MlaE RR42_RS18970 PF00005 ABC transporter RR42_RS18975 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS18985 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS18985 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RR42_RS18990 PF00310 Glutamine amidotransferases class-II RR42_RS18990 PF01493 GXGXG motif RR42_RS18990 PF01645 Conserved region in glutamate synthase RR42_RS18990 PF04898 Glutamate synthase central domain RR42_RS19000 PF13286 Phosphohydrolase-associated domain RR42_RS19000 PF01966 HD domain RR42_RS19005 PF01761 3-dehydroquinate synthase RR42_RS19010 PF01202 Shikimate kinase RR42_RS19015 PF03958 Bacterial type II/III secretion system short domain RR42_RS19015 PF00263 Bacterial type II and III secretion system protein RR42_RS19015 PF07660 Secretin and TonB N terminus short domain RR42_RS19015 PF11741 AMIN domain RR42_RS19030 PF05137 Fimbrial assembly protein (PilN) RR42_RS19035 PF11104 Type IV pilus assembly protein PilM; RR42_RS19040 PF00912 Transglycosylase RR42_RS19040 PF17092 Penicillin-binding protein OB-like domain RR42_RS19040 PF00905 Penicillin binding protein transpeptidase domain RR42_RS19045 PF01491 Frataxin-like domain RR42_RS19050 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RR42_RS19050 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RR42_RS19055 PF01794 Ferric reductase like transmembrane component RR42_RS19060 PF00174 Oxidoreductase molybdopterin binding domain RR42_RS19070 PF04542 Sigma-70 region 2 RR42_RS19070 PF08281 Sigma-70, region 4 RR42_RS19080 PF01578 Cytochrome C assembly protein RR42_RS19085 PF05140 ResB-like family RR42_RS19090 PF00034 Cytochrome c RR42_RS19095 PF01926 50S ribosome-binding GTPase RR42_RS19100 PF00490 Delta-aminolevulinic acid dehydratase RR42_RS19105 PF01544 CorA-like Mg2+ transporter protein RR42_RS19110 PF11412 Disulphide bond corrector protein DsbC RR42_RS19110 PF02683 Cytochrome C biogenesis protein transmembrane region RR42_RS19115 PF03091 CutA1 divalent ion tolerance protein RR42_RS19120 PF01196 Ribosomal protein L17 RR42_RS19125 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RR42_RS19125 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RR42_RS19125 PF01000 RNA polymerase Rpb3/RpoA insert domain RR42_RS19130 PF01479 S4 domain RR42_RS19130 PF00163 Ribosomal protein S4/S9 N-terminal domain RR42_RS19135 PF00411 Ribosomal protein S11 RR42_RS19140 PF00416 Ribosomal protein S13/S18 RR42_RS19145 PF00444 Ribosomal protein L36 RR42_RS19150 PF01176 Translation initiation factor 1A / IF-1 RR42_RS19155 PF00344 SecY translocase RR42_RS19160 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RR42_RS19165 PF00327 Ribosomal protein L30p/L7e RR42_RS19170 PF00333 Ribosomal protein S5, N-terminal domain RR42_RS19170 PF03719 Ribosomal protein S5, C-terminal domain RR42_RS19175 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RR42_RS19180 PF00347 Ribosomal protein L6 RR42_RS19185 PF00410 Ribosomal protein S8 RR42_RS19190 PF00253 Ribosomal protein S14p/S29e RR42_RS19195 PF00281 Ribosomal protein L5 RR42_RS19195 PF00673 ribosomal L5P family C-terminus RR42_RS19200 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RR42_RS19200 PF00467 KOW motif RR42_RS19205 PF00238 Ribosomal protein L14p/L23e RR42_RS19210 PF00366 Ribosomal protein S17 RR42_RS19215 PF00831 Ribosomal L29 protein RR42_RS19220 PF00252 Ribosomal protein L16p/L10e RR42_RS19225 PF07650 KH domain RR42_RS19225 PF00189 Ribosomal protein S3, C-terminal domain RR42_RS19230 PF00237 Ribosomal protein L22p/L17e RR42_RS19235 PF00203 Ribosomal protein S19 RR42_RS19240 PF00181 Ribosomal Proteins L2, RNA binding domain RR42_RS19240 PF03947 Ribosomal Proteins L2, C-terminal domain RR42_RS19245 PF00276 Ribosomal protein L23 RR42_RS19250 PF00573 Ribosomal protein L4/L1 family RR42_RS19255 PF00297 Ribosomal protein L3 RR42_RS19260 PF01613 Flavin reductase like domain RR42_RS19265 PF17885 Styrene monooxygenase A putative substrate binding domain RR42_RS19275 PF01738 Dienelactone hydrolase family RR42_RS19280 PF14525 AraC-binding-like domain RR42_RS19280 PF12833 Helix-turn-helix domain RR42_RS19285 PF00338 Ribosomal protein S10p/S20e RR42_RS19290 PF03143 Elongation factor Tu C-terminal domain RR42_RS19290 PF00009 Elongation factor Tu GTP binding domain RR42_RS19290 PF03144 Elongation factor Tu domain 2 RR42_RS19295 PF00009 Elongation factor Tu GTP binding domain RR42_RS19295 PF03144 Elongation factor Tu domain 2 RR42_RS19295 PF14492 Elongation Factor G, domain II RR42_RS19295 PF00679 Elongation factor G C-terminus RR42_RS19295 PF03764 Elongation factor G, domain IV RR42_RS19300 PF00177 Ribosomal protein S7p/S5e RR42_RS19305 PF00164 Ribosomal protein S12/S23 RR42_RS19310 PF00570 HRDC domain RR42_RS19310 PF00270 DEAD/DEAH box helicase RR42_RS19310 PF16124 RecQ zinc-binding RR42_RS19310 PF09382 RQC domain RR42_RS19310 PF00271 Helicase conserved C-terminal domain RR42_RS19315 PF04998 RNA polymerase Rpb1, domain 5 RR42_RS19315 PF05000 RNA polymerase Rpb1, domain 4 RR42_RS19315 PF04983 RNA polymerase Rpb1, domain 3 RR42_RS19315 PF00623 RNA polymerase Rpb1, domain 2 RR42_RS19315 PF04997 RNA polymerase Rpb1, domain 1 RR42_RS19320 PF04563 RNA polymerase beta subunit RR42_RS19320 PF04561 RNA polymerase Rpb2, domain 2 RR42_RS19320 PF04565 RNA polymerase Rpb2, domain 3 RR42_RS19320 PF10385 RNA polymerase beta subunit external 1 domain RR42_RS19320 PF00562 RNA polymerase Rpb2, domain 6 RR42_RS19320 PF04560 RNA polymerase Rpb2, domain 7 RR42_RS19325 PF16320 Ribosomal protein L7/L12 dimerisation domain RR42_RS19325 PF00542 Ribosomal protein L7/L12 C-terminal domain RR42_RS19330 PF00466 Ribosomal protein L10 RR42_RS19335 PF00687 Ribosomal protein L1p/L10e family RR42_RS19340 PF03946 Ribosomal protein L11, N-terminal domain RR42_RS19340 PF00298 Ribosomal protein L11, RNA binding domain RR42_RS19345 PF02357 Transcription termination factor nusG RR42_RS19345 PF00467 KOW motif RR42_RS19360 PF03143 Elongation factor Tu C-terminal domain RR42_RS19360 PF03144 Elongation factor Tu domain 2 RR42_RS19360 PF00009 Elongation factor Tu GTP binding domain RR42_RS19410 PF00392 Bacterial regulatory proteins, gntR family RR42_RS19410 PF07729 FCD domain RR42_RS19415 PF07670 Nucleoside recognition RR42_RS19430 PF00582 Universal stress protein family RR42_RS19445 PF00440 Bacterial regulatory proteins, tetR family RR42_RS19450 PF00999 Sodium/hydrogen exchanger family RR42_RS19450 PF02254 TrkA-N domain RR42_RS19455 PF02525 Flavodoxin-like fold RR42_RS19465 PF01037 Lrp/AsnC ligand binding domain RR42_RS19480 PF07963 Prokaryotic N-terminal methylation motif RR42_RS19480 PF08334 Type II secretion system (T2SS), protein G RR42_RS19485 PF12019 Type II transport protein GspH RR42_RS19485 PF07963 Prokaryotic N-terminal methylation motif RR42_RS19490 PF07963 Prokaryotic N-terminal methylation motif RR42_RS19490 PF02501 Type II secretion system (T2SS), protein I RR42_RS19495 PF11612 Type II secretion system (T2SS), protein J RR42_RS19495 PF07963 Prokaryotic N-terminal methylation motif RR42_RS19505 PF12693 GspL periplasmic domain RR42_RS19505 PF05134 Type II secretion system (T2SS), protein L RR42_RS19520 PF00263 Bacterial type II and III secretion system protein RR42_RS19520 PF03958 Bacterial type II/III secretion system short domain RR42_RS19525 PF00437 Type II/IV secretion system protein RR42_RS19530 PF00482 Type II secretion system (T2SS), protein F RR42_RS19565 PF01370 NAD dependent epimerase/dehydratase family RR42_RS19565 PF08338 Domain of unknown function (DUF1731) RR42_RS19580 PF00583 Acetyltransferase (GNAT) family RR42_RS19585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RR42_RS19595 PF07690 Major Facilitator Superfamily RR42_RS19600 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RR42_RS19610 PF07690 Major Facilitator Superfamily RR42_RS19630 PF03352 Methyladenine glycosylase RR42_RS19640 PF00589 Phage integrase family RR42_RS19660 PF02872 5'-nucleotidase, C-terminal domain RR42_RS19660 PF00149 Calcineurin-like phosphoesterase RR42_RS19665 PF08534 Redoxin RR42_RS19695 PF00034 Cytochrome c RR42_RS19700 PF00034 Cytochrome c RR42_RS19705 PF00174 Oxidoreductase molybdopterin binding domain RR42_RS19710 PF01022 Bacterial regulatory protein, arsR family RR42_RS19715 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS19715 PF10518 TAT (twin-arginine translocation) pathway signal sequence RR42_RS19715 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding RR42_RS19725 PF04972 BON domain RR42_RS19730 PF13580 SIS domain RR42_RS19735 PF02021 Uncharacterised protein family UPF0102 RR42_RS19740 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RR42_RS19745 PF03330 Lytic transglycolase RR42_RS19745 PF05036 Sporulation related domain RR42_RS19750 PF00753 Metallo-beta-lactamase superfamily RR42_RS19765 PF03960 ArsC family RR42_RS19770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS19770 PF03466 LysR substrate binding domain RR42_RS19780 PF01546 Peptidase family M20/M25/M40 RR42_RS19780 PF07687 Peptidase dimerisation domain RR42_RS19785 PF07687 Peptidase dimerisation domain RR42_RS19785 PF01546 Peptidase family M20/M25/M40 RR42_RS19790 PF00375 Sodium:dicarboxylate symporter family RR42_RS19805 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS19810 PF13193 AMP-binding enzyme C-terminal domain RR42_RS19810 PF00501 AMP-binding enzyme RR42_RS19815 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS19825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS19825 PF03466 LysR substrate binding domain RR42_RS19830 PF03466 LysR substrate binding domain RR42_RS19830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS19835 PF07690 Major Facilitator Superfamily RR42_RS19840 PF07687 Peptidase dimerisation domain RR42_RS19840 PF01546 Peptidase family M20/M25/M40 RR42_RS19850 PF00205 Thiamine pyrophosphate enzyme, central domain RR42_RS19850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RR42_RS19850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RR42_RS19855 PF01261 Xylose isomerase-like TIM barrel RR42_RS19860 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RR42_RS19860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RR42_RS19865 PF05161 MOFRL family RR42_RS19865 PF13660 Domain of unknown function (DUF4147) RR42_RS19870 PF00224 Pyruvate kinase, barrel domain RR42_RS19870 PF02887 Pyruvate kinase, alpha/beta domain RR42_RS19875 PF04228 Putative neutral zinc metallopeptidase RR42_RS19885 PF00873 AcrB/AcrD/AcrF family RR42_RS19895 PF03449 Transcription elongation factor, N-terminal RR42_RS19895 PF01272 Transcription elongation factor, GreA/GreB, C-term RR42_RS19900 PF13411 MerR HTH family regulatory protein RR42_RS19905 PF02675 S-adenosylmethionine decarboxylase RR42_RS19920 PF03994 Domain of Unknown Function (DUF350) RR42_RS19940 PF01435 Peptidase family M48 RR42_RS19945 PF12833 Helix-turn-helix domain RR42_RS19945 PF01965 DJ-1/PfpI family RR42_RS19950 PF07690 Major Facilitator Superfamily RR42_RS19955 PF00175 Oxidoreductase NAD-binding domain RR42_RS19955 PF00258 Flavodoxin RR42_RS19955 PF00667 FAD binding domain RR42_RS19955 PF00067 Cytochrome P450 RR42_RS19960 PF00440 Bacterial regulatory proteins, tetR family RR42_RS19965 PF13609 Gram-negative porin RR42_RS19970 PF00528 Binding-protein-dependent transport system inner membrane component RR42_RS19975 PF00005 ABC transporter RR42_RS19985 PF00486 Transcriptional regulatory protein, C terminal RR42_RS19985 PF00072 Response regulator receiver domain RR42_RS19990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS19990 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS19995 PF00472 RF-1 domain RR42_RS20000 PF01464 Transglycosylase SLT domain RR42_RS20020 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RR42_RS20025 PF04055 Radical SAM superfamily RR42_RS20025 PF06969 HemN C-terminal domain RR42_RS20035 PF00672 HAMP domain RR42_RS20035 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS20035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS20040 PF00072 Response regulator receiver domain RR42_RS20040 PF00486 Transcriptional regulatory protein, C terminal RR42_RS20055 PF13361 UvrD-like helicase C-terminal domain RR42_RS20055 PF00580 UvrD/REP helicase N-terminal domain RR42_RS20060 PF08669 Glycine cleavage T-protein C-terminal barrel domain RR42_RS20060 PF01571 Aminomethyltransferase folate-binding domain RR42_RS20065 PF01597 Glycine cleavage H-protein RR42_RS20070 PF02347 Glycine cleavage system P-protein RR42_RS20075 PF04239 Protein of unknown function (DUF421) RR42_RS20080 PF03313 Serine dehydratase alpha chain RR42_RS20080 PF03315 Serine dehydratase beta chain RR42_RS20090 PF16123 Hydroxyacylglutathione hydrolase C-terminus RR42_RS20090 PF00753 Metallo-beta-lactamase superfamily RR42_RS20100 PF04107 Glutamate-cysteine ligase family 2(GCS2) RR42_RS20120 PF13458 Periplasmic binding protein RR42_RS20125 PF00171 Aldehyde dehydrogenase family RR42_RS20125 PF01619 Proline dehydrogenase RR42_RS20125 PF14850 DNA-binding domain of Proline dehydrogenase RR42_RS20125 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RR42_RS20130 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RR42_RS20130 PF18074 Primosomal protein N C-terminal domain RR42_RS20130 PF17764 3′ DNA-binding domain (3′BD) RR42_RS20130 PF00271 Helicase conserved C-terminal domain RR42_RS20130 PF00270 DEAD/DEAH box helicase RR42_RS20135 PF01208 Uroporphyrinogen decarboxylase (URO-D) RR42_RS20140 PF07859 alpha/beta hydrolase fold RR42_RS20145 PF13380 CoA binding domain RR42_RS20155 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RR42_RS20155 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RR42_RS20160 PF02874 ATP synthase alpha/beta family, beta-barrel domain RR42_RS20160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RR42_RS20165 PF00231 ATP synthase RR42_RS20170 PF00306 ATP synthase alpha/beta chain, C terminal domain RR42_RS20170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RR42_RS20170 PF02874 ATP synthase alpha/beta family, beta-barrel domain RR42_RS20175 PF00213 ATP synthase delta (OSCP) subunit RR42_RS20180 PF00430 ATP synthase B/B' CF(0) RR42_RS20185 PF00137 ATP synthase subunit C RR42_RS20190 PF00119 ATP synthase A chain RR42_RS20200 PF02195 ParB-like nuclease domain RR42_RS20200 PF17762 HTH domain found in ParB protein RR42_RS20205 PF13614 AAA domain RR42_RS20210 PF02527 rRNA small subunit methyltransferase G RR42_RS20215 PF01134 Glucose inhibited division protein A RR42_RS20215 PF13932 GidA associated domain RR42_RS20225 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS20230 PF03466 LysR substrate binding domain RR42_RS20230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS20235 PF00005 ABC transporter RR42_RS20240 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS20240 PF00005 ABC transporter RR42_RS20255 PF01925 Sulfite exporter TauE/SafE RR42_RS20270 PF02653 Branched-chain amino acid transport system / permease component RR42_RS20280 PF00005 ABC transporter RR42_RS20285 PF00005 ABC transporter RR42_RS20285 PF12399 Branched-chain amino acid ATP-binding cassette transporter RR42_RS20290 PF05199 GMC oxidoreductase RR42_RS20290 PF00732 GMC oxidoreductase RR42_RS20295 PF12146 Serine aminopeptidase, S33 RR42_RS20300 PF09278 MerR, DNA binding RR42_RS20300 PF00376 MerR family regulatory protein RR42_RS20305 PF00403 Heavy-metal-associated domain RR42_RS20315 PF03922 OmpW family RR42_RS20320 PF02423 Ornithine cyclodeaminase/mu-crystallin family RR42_RS20325 PF00248 Aldo/keto reductase family RR42_RS20330 PF03466 LysR substrate binding domain RR42_RS20330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS20340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS20340 PF03466 LysR substrate binding domain RR42_RS20345 PF00905 Penicillin binding protein transpeptidase domain RR42_RS20345 PF00912 Transglycosylase RR42_RS20350 PF07947 YhhN family RR42_RS20360 PF01037 Lrp/AsnC ligand binding domain RR42_RS20365 PF00351 Biopterin-dependent aromatic amino acid hydroxylase RR42_RS20370 PF01329 Pterin 4 alpha carbinolamine dehydratase RR42_RS20375 PF00486 Transcriptional regulatory protein, C terminal RR42_RS20375 PF00072 Response regulator receiver domain RR42_RS20380 PF08521 Two-component sensor kinase N-terminal RR42_RS20380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS20380 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS20390 PF00216 Bacterial DNA-binding protein RR42_RS20400 PF00596 Class II Aldolase and Adducin N-terminal domain RR42_RS20405 PF02558 Ketopantoate reductase PanE/ApbA RR42_RS20405 PF08546 Ketopantoate reductase PanE/ApbA C terminal RR42_RS20410 PF00892 EamA-like transporter family RR42_RS20415 PF03480 Bacterial extracellular solute-binding protein, family 7 RR42_RS20425 PF00230 Major intrinsic protein RR42_RS20435 PF02954 Bacterial regulatory protein, Fis family RR42_RS20435 PF00072 Response regulator receiver domain RR42_RS20435 PF00072 Response regulator receiver domain RR42_RS20435 PF02954 Bacterial regulatory protein, Fis family RR42_RS20435 PF00158 Sigma-54 interaction domain RR42_RS20435 PF00158 Sigma-54 interaction domain RR42_RS20440 PF00672 HAMP domain RR42_RS20440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS20440 PF00989 PAS fold RR42_RS20440 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS20450 PF01029 NusB family RR42_RS20450 PF01189 16S rRNA methyltransferase RsmB/F RR42_RS20455 PF01435 Peptidase family M48 RR42_RS20460 PF01810 LysE type translocator RR42_RS20465 PF00551 Formyl transferase RR42_RS20465 PF02911 Formyl transferase, C-terminal domain RR42_RS20470 PF01327 Polypeptide deformylase RR42_RS20480 PF02481 DNA recombination-mediator protein A RR42_RS20480 PF17782 DprA winged helix domain RR42_RS20490 PF01751 Toprim domain RR42_RS20490 PF01131 DNA topoisomerase RR42_RS20495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS20495 PF03466 LysR substrate binding domain RR42_RS20510 PF04328 Selenoprotein, putative RR42_RS20515 PF13722 5TM C-terminal transporter carbon starvation CstA RR42_RS20515 PF02554 Carbon starvation protein CstA RR42_RS20520 PF07730 Histidine kinase RR42_RS20520 PF17200 Single Cache domain 2 RR42_RS20525 PF00196 Bacterial regulatory proteins, luxR family RR42_RS20525 PF00072 Response regulator receiver domain RR42_RS20530 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain RR42_RS20530 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain RR42_RS20535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RR42_RS20535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RR42_RS20540 PF07690 Major Facilitator Superfamily RR42_RS20545 PF03473 MOSC domain RR42_RS20545 PF03475 3-alpha domain RR42_RS20550 PF13533 Biotin-lipoyl like RR42_RS20555 PF00873 AcrB/AcrD/AcrF family RR42_RS20560 PF07715 TonB-dependent Receptor Plug Domain RR42_RS20560 PF00593 TonB dependent receptor RR42_RS20565 PF02514 CobN/Magnesium Chelatase RR42_RS20585 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RR42_RS20585 PF07992 Pyridine nucleotide-disulphide oxidoreductase RR42_RS20610 PF01970 Tripartite tricarboxylate transporter TctA family RR42_RS20620 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS20625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS20625 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS20630 PF00072 Response regulator receiver domain RR42_RS20630 PF00486 Transcriptional regulatory protein, C terminal RR42_RS20640 PF00440 Bacterial regulatory proteins, tetR family RR42_RS20640 PF08361 MAATS-type transcriptional repressor, C-terminal region RR42_RS20645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR42_RS20645 PF00529 HlyD membrane-fusion protein of T1SS RR42_RS20650 PF00873 AcrB/AcrD/AcrF family RR42_RS20655 PF02321 Outer membrane efflux protein RR42_RS20675 PF01037 Lrp/AsnC ligand binding domain RR42_RS20700 PF00732 GMC oxidoreductase RR42_RS20700 PF05199 GMC oxidoreductase RR42_RS20710 PF12833 Helix-turn-helix domain RR42_RS20710 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RR42_RS20715 PF00743 Flavin-binding monooxygenase-like RR42_RS20720 PF00106 short chain dehydrogenase RR42_RS20725 PF00364 Biotin-requiring enzyme RR42_RS20725 PF00561 alpha/beta hydrolase fold RR42_RS20735 PF00301 Rubredoxin RR42_RS20745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RR42_RS20745 PF03466 LysR substrate binding domain RR42_RS20750 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS20780 PF01757 Acyltransferase family RR42_RS20785 PF01757 Acyltransferase family RR42_RS20805 PF10396 GTP-binding protein TrmE N-terminus RR42_RS20805 PF01926 50S ribosome-binding GTPase RR42_RS20805 PF12631 MnmE helical domain RR42_RS20825 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH RR42_RS20830 PF14849 YidC periplasmic domain RR42_RS20830 PF02096 60Kd inner membrane protein RR42_RS20835 PF00825 Ribonuclease P RR42_RS20840 PF00468 Ribosomal protein L34 RR42_RS20885 PF07728 AAA domain (dynein-related subfamily) RR42_RS20885 PF12102 Domain of unknown function (DUF3578) RR42_RS21165 PF07364 Metallopeptidase family M81 RR42_RS21165 PF07171 MlrC C-terminus RR42_RS21605 PF09383 NIL domain RR42_RS21605 PF00005 ABC transporter RR42_RS21750 PF13411 MerR HTH family regulatory protein RR42_RS22300 PF00330 Aconitase family (aconitate hydratase) RR42_RS22370 PF00171 Aldehyde dehydrogenase family RR42_RS22425 PF08447 PAS fold RR42_RS22425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RR42_RS22440 PF00501 AMP-binding enzyme RR42_RS22620 PF02896 PEP-utilising enzyme, TIM barrel domain RR42_RS22620 PF00391 PEP-utilising enzyme, mobile domain RR42_RS22620 PF05524 PEP-utilising enzyme, N-terminal RR42_RS22970 PF00890 FAD binding domain RR42_RS22970 PF02910 Fumarate reductase flavoprotein C-term RR42_RS23110 PF00585 C-terminal regulatory domain of Threonine dehydratase RR42_RS23110 PF00291 Pyridoxal-phosphate dependent enzyme RR42_RS23170 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS23170 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RR42_RS23330 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RR42_RS23330 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RR42_RS23330 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS23430 PF00180 Isocitrate/isopropylmalate dehydrogenase RR42_RS23560 PF05195 Aminopeptidase P, N-terminal domain RR42_RS23560 PF00557 Metallopeptidase family M24 RR42_RS23575 PF04453 LPS transport system D RR42_RS23575 PF03968 OstA-like protein RR42_RS23820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RR42_RS23865 PF00549 CoA-ligase RR42_RS23865 PF08442 ATP-grasp domain RR42_RS24010 PF02887 Pyruvate kinase, alpha/beta domain RR42_RS24010 PF00224 Pyruvate kinase, barrel domain RR42_RS24095 PF02321 Outer membrane efflux protein RR42_RS24115 PF00873 AcrB/AcrD/AcrF family RR42_RS24135 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS24135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS24135 PF00672 HAMP domain RR42_RS24180 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RR42_RS24180 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RR42_RS24300 PF17871 AAA lid domain RR42_RS24300 PF07724 AAA domain (Cdc48 subfamily) RR42_RS24300 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS24300 PF10431 C-terminal, D2-small domain, of ClpB protein RR42_RS24330 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) RR42_RS24330 PF04717 Type VI secretion system, phage-baseplate injector RR42_RS24330 PF13296 Putative type VI secretion system Rhs element Vgr RR42_RS24400 PF13409 Glutathione S-transferase, N-terminal domain RR42_RS24555 PF11339 Protein of unknown function (DUF3141) RR42_RS24635 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS24645 PF00355 Rieske [2Fe-2S] domain RR42_RS24655 PF00860 Permease family RR42_RS24745 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS25015 PF07690 Major Facilitator Superfamily RR42_RS25095 PF00004 ATPase family associated with various cellular activities (AAA) RR42_RS25095 PF16193 AAA C-terminal domain RR42_RS25095 PF12002 MgsA AAA+ ATPase C terminal RR42_RS25225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RR42_RS25755 PF12848 ABC transporter RR42_RS25755 PF00005 ABC transporter RR42_RS25770 PF00324 Amino acid permease RR42_RS25810 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS25830 PF07859 alpha/beta hydrolase fold RR42_RS25880 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RR42_RS25880 PF01433 Peptidase family M1 domain RR42_RS25880 PF11940 Domain of unknown function (DUF3458) Ig-like fold RR42_RS25955 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RR42_RS26000 PF00962 Adenosine/AMP deaminase RR42_RS26480 PF03710 Glutamate-ammonia ligase adenylyltransferase RR42_RS26480 PF08335 GlnD PII-uridylyltransferase RR42_RS26485 PF08335 GlnD PII-uridylyltransferase RR42_RS26485 PF03710 Glutamate-ammonia ligase adenylyltransferase RR42_RS26580 PF00155 Aminotransferase class I and II RR42_RS26790 PF00550 Phosphopantetheine attachment site RR42_RS26790 PF00668 Condensation domain RR42_RS26790 PF13193 AMP-binding enzyme C-terminal domain RR42_RS26790 PF00501 AMP-binding enzyme RR42_RS26920 PF01171 PP-loop family RR42_RS26920 PF09179 TilS substrate binding domain RR42_RS26920 PF11734 TilS substrate C-terminal domain RR42_RS26995 PF03358 NADPH-dependent FMN reductase RR42_RS27115 PF00106 short chain dehydrogenase RR42_RS27165 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RR42_RS27165 PF01588 Putative tRNA binding domain RR42_RS27165 PF03147 Ferredoxin-fold anticodon binding domain RR42_RS27165 PF03484 tRNA synthetase B5 domain RR42_RS27165 PF03483 B3/4 domain RR42_RS27600 PF01979 Amidohydrolase family RR42_RS27815 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS27995 PF16347 Domain of unknown function (DUF4976) RR42_RS27995 PF00884 Sulfatase RR42_RS28250 PF01546 Peptidase family M20/M25/M40 RR42_RS29185 PF00342 Phosphoglucose isomerase RR42_RS29200 PF01256 Carbohydrate kinase RR42_RS29255 PF01968 Hydantoinase/oxoprolinase RR42_RS29255 PF05378 Hydantoinase/oxoprolinase N-terminal region RR42_RS29360 PF00970 Oxidoreductase FAD-binding domain RR42_RS29360 PF00042 Globin RR42_RS29360 PF00175 Oxidoreductase NAD-binding domain RR42_RS29365 PF00175 Oxidoreductase NAD-binding domain RR42_RS29365 PF00042 Globin RR42_RS29365 PF00970 Oxidoreductase FAD-binding domain RR42_RS29835 PF13954 PapC N-terminal domain RR42_RS29835 PF00577 Outer membrane usher protein RR42_RS29835 PF13953 PapC C-terminal domain RR42_RS29890 PF00005 ABC transporter RR42_RS29920 PF00156 Phosphoribosyl transferase domain RR42_RS29920 PF01738 Dienelactone hydrolase family RR42_RS30060 PF07690 Major Facilitator Superfamily RR42_RS30415 PF00378 Enoyl-CoA hydratase/isomerase RR42_RS30460 PF00106 short chain dehydrogenase RR42_RS30905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RR42_RS31165 PF00375 Sodium:dicarboxylate symporter family RR42_RS31225 PF13193 AMP-binding enzyme C-terminal domain RR42_RS31225 PF00501 AMP-binding enzyme RR42_RS31345 PF00285 Citrate synthase, C-terminal domain RR42_RS31350 PF00285 Citrate synthase, C-terminal domain RR42_RS31625 PF18381 YcaO cyclodehydratase C-terminal domain RR42_RS31625 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding RR42_RS32255 PF00463 Isocitrate lyase family RR42_RS32555 PF13638 PIN domain RR42_RS32555 PF02562 PhoH-like protein RR42_RS32685 PF03412 Peptidase C39 family RR42_RS32685 PF00005 ABC transporter RR42_RS32685 PF00664 ABC transporter transmembrane region RR42_RS32870 PF00403 Heavy-metal-associated domain RR42_RS33030 PF17876 Cold shock domain RR42_RS33030 PF08461 Ribonuclease R winged-helix domain RR42_RS33030 PF08206 Ribonuclease B OB domain RR42_RS33030 PF00773 RNB domain RR42_RS33030 PF00575 S1 RNA binding domain RR42_RS33120 PF05958 tRNA (Uracil-5-)-methyltransferase RR42_RS33275 PF00749 tRNA synthetases class I (E and Q), catalytic domain RR42_RS33285 PF00877 NlpC/P60 family RR42_RS33360 PF17941 Polyphosphate kinase C-terminal domain 1 RR42_RS33360 PF02503 Polyphosphate kinase middle domain RR42_RS33360 PF13089 Polyphosphate kinase N-terminal domain RR42_RS33360 PF13090 Polyphosphate kinase C-terminal domain 2 RR42_RS33415 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RR42_RS33415 PF02142 MGS-like domain RR42_RS33415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RR42_RS33540 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RR42_RS33540 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RR42_RS33730 PF00672 HAMP domain RR42_RS33730 PF00512 His Kinase A (phospho-acceptor) domain RR42_RS33730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RR42_RS33810 PF08459 UvrC Helix-hairpin-helix N-terminal RR42_RS33810 PF02151 UvrB/uvrC motif RR42_RS33810 PF01541 GIY-YIG catalytic domain RR42_RS33855 PF06421 GTP-binding protein LepA C-terminus RR42_RS33855 PF00009 Elongation factor Tu GTP binding domain RR42_RS33855 PF00679 Elongation factor G C-terminus RR42_RS33855 PF03144 Elongation factor Tu domain 2 RR42_RS34060 PF00005 ABC transporter RR42_RS34275 PF00694 Aconitase C-terminal domain RR42_RS34275 PF00330 Aconitase family (aconitate hydratase) RR42_RS34450 PF00521 DNA gyrase/topoisomerase IV, subunit A RR42_RS34685 PF13180 PDZ domain RR42_RS34725 PF00140 Sigma-70 factor, region 1.2 RR42_RS34725 PF04542 Sigma-70 region 2 RR42_RS34725 PF04539 Sigma-70 region 3 RR42_RS34725 PF04546 Sigma-70, non-essential region RR42_RS34725 PF04545 Sigma-70, region 4 RR42_RS34725 PF03979 Sigma-70 factor, region 1.1 RR42_RS34845 PF08264 Anticodon-binding domain of tRNA RR42_RS34845 PF00133 tRNA synthetases class I (I, L, M and V) RR42_RS34845 PF10458 Valyl tRNA synthetase tRNA binding arm RR42_RS35330 PF00873 AcrB/AcrD/AcrF family RR42_RS35385 PF02397 Bacterial sugar transferase RR42_RS35490 PF00202 Aminotransferase class-III RR42_RS35530 PF16363 GDP-mannose 4,6 dehydratase RR42_RS35610 PF00206 Lyase RR42_RS35610 PF14698 Argininosuccinate lyase C-terminal RR42_RS35680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RR42_RS35680 PF00384 Molybdopterin oxidoreductase RR42_RS35680 PF01568 Molydopterin dinucleotide binding domain RR42_RS35735 PF01588 Putative tRNA binding domain RR42_RS35735 PF09334 tRNA synthetases class I (M) RR42_RS35740 PF01588 Putative tRNA binding domain RR42_RS35740 PF09334 tRNA synthetases class I (M) RR42_RS35815 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RR42_RS35815 PF07685 CobB/CobQ-like glutamine amidotransferase domain RR42_RS35925 PF13419 Haloacid dehalogenase-like hydrolase RR42_RS36275 PF03401 Tripartite tricarboxylate transporter family receptor RR42_RS36355 PF01118 Semialdehyde dehydrogenase, NAD binding domain RR42_RS36535 PF05567 Neisseria PilC beta-propeller domain RR42_RS36840 PF00764 Arginosuccinate synthase RR42_RS37100 PF02233 NAD(P) transhydrogenase beta subunit RR42_RS37375 PF02867 Ribonucleotide reductase, barrel domain RR42_RS37375 PF03477 ATP cone domain RR42_RS37375 PF00317 Ribonucleotide reductase, all-alpha domain RR42_RS37420 PF02978 Signal peptide binding domain RR42_RS37420 PF00448 SRP54-type protein, GTPase domain RR42_RS37420 PF02881 SRP54-type protein, helical bundle domain RR42_RS37470 PF00348 Polyprenyl synthetase RR42_RS37505 PF06750 Bacterial Peptidase A24 N-terminal domain RR42_RS37505 PF01478 Type IV leader peptidase family RR42_RS37525 PF01960 ArgJ family RR42_RS37555 PF01967 MoaC family RR42_RS37570 PF00873 AcrB/AcrD/AcrF family RR42_RS37575 PF13533 Biotin-lipoyl like RR42_RS37590 PF00196 Bacterial regulatory proteins, luxR family RR42_RS37595 PF02463 RecF/RecN/SMC N terminal domain RR42_RS37705 PF13332 Hemagglutinin repeat RR42_RS37705 PF04829 Pre-toxin domain with VENN motif RR42_RS37705 PF05594 Haemagluttinin repeat RR42_RS37705 PF14436 Bacterial EndoU nuclease RR42_RS37705 PF05860 haemagglutination activity domain RR42_RS37725 PF00072 Response regulator receiver domain RR42_RS37725 PF00196 Bacterial regulatory proteins, luxR family RR42_RS37750 PF01979 Amidohydrolase family RR42_RS37765 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme RR42_RS37780 PF00497 Bacterial extracellular solute-binding proteins, family 3 RR42_RS37810 PF00440 Bacterial regulatory proteins, tetR family RR42_RS37965 PF00403 Heavy-metal-associated domain