RR42_RS00005	SM00382	ATPases associated with a variety of cellular activities
RR42_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
RR42_RS00010	SM00480	DNA polymerase III beta subunit
RR42_RS00015	SM00387	Histidine kinase-like ATPases
RR42_RS00015	SM00433	TopoisomeraseII
RR42_RS00025	SM00382	ATPases associated with a variety of cellular activities
RR42_RS00040	SM00857	Resolvase, N terminal domain
RR42_RS00055	SM00974	RR42_RS00055
RR42_RS00130	SM00052	Putative diguanylate phosphodiesterase
RR42_RS00130	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RR42_RS00130	SM00091	PAS domain
RR42_RS00130	SM00267	diguanylate cyclase
RR42_RS00135	SM00912	haemagglutination activity domain
RR42_RS00150	SM00912	haemagglutination activity domain
RR42_RS00205	SM00382	ATPases associated with a variety of cellular activities
RR42_RS00210	SM00382	ATPases associated with a variety of cellular activities
RR42_RS00225	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS00250	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS00250	SM00895	RR42_RS00250
RR42_RS00265	SM00382	ATPases associated with a variety of cellular activities
RR42_RS00270	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS00275	SM00858	RR42_RS00275
RR42_RS00295	SM00487	DEAD-like helicases superfamily
RR42_RS00295	SM00490	helicase superfamily c-terminal domain
RR42_RS00300	SM00090	RIO-like kinase
RR42_RS00315	SM00704	CDGSH-type zinc finger. Function unknown.
RR42_RS00320	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS00335	SM00849	Metallo-beta-lactamase superfamily
RR42_RS00380	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS00380	SM00895	RR42_RS00380
RR42_RS00395	SM00342	helix_turn_helix, arabinose operon control protein
RR42_RS00410	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS00430	SM00448	cheY-homologous receiver domain
RR42_RS00430	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS00435	SM00448	cheY-homologous receiver domain
RR42_RS00435	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS00495	SM00387	Histidine kinase-like ATPases
RR42_RS00495	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS00500	SM00448	cheY-homologous receiver domain
RR42_RS00500	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS00505	SM00387	Histidine kinase-like ATPases
RR42_RS00505	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS00510	SM00448	cheY-homologous receiver domain
RR42_RS00510	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS00525	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS00530	SM00671	Sel1-like repeats.
RR42_RS00535	SM00460	Transglutaminase/protease-like homologues
RR42_RS00545	SM00460	Transglutaminase/protease-like homologues
RR42_RS00605	SM00845	GatB domain
RR42_RS00635	SM00729	Elongator protein 3, MiaB family, Radical SAM
RR42_RS00640	SM00796	Allophanate hydrolase subunit 1
RR42_RS00645	SM00797	Allophanate hydrolase subunit 2
RR42_RS00685	SM00382	ATPases associated with a variety of cellular activities
RR42_RS00745	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS00765	SM00450	Rhodanese Homology Domain
RR42_RS00775	SM01018	B12 binding domain
RR42_RS00785	SM00421	helix_turn_helix, Lux Regulon
RR42_RS00785	SM00448	cheY-homologous receiver domain
RR42_RS00790	SM00448	cheY-homologous receiver domain
RR42_RS00800	SM00387	Histidine kinase-like ATPases
RR42_RS00825	SM00836	DALR anticodon binding domain
RR42_RS00825	SM01016	Arginyl tRNA synthetase N terminal dom
RR42_RS00855	SM00849	Metallo-beta-lactamase superfamily
RR42_RS00860	SM00422	helix_turn_helix, mercury resistance
RR42_RS00880	SM00947	Carbonic anhydrase
RR42_RS00940	SM00729	Elongator protein 3, MiaB family, Radical SAM
RR42_RS00940	SM00876	Biotin and Thiamin Synthesis associated domain
RR42_RS00975	SM00849	Metallo-beta-lactamase superfamily
RR42_RS00990	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS00990	SM00866	RR42_RS00990
RR42_RS01025	SM00833	Cobalamin synthesis protein cobW C-terminal domain
RR42_RS01040	SM00833	Cobalamin synthesis protein cobW C-terminal domain
RR42_RS01065	SM00382	ATPases associated with a variety of cellular activities
RR42_RS01065	SM01086	C-terminal, D2-small domain, of ClpB protein
RR42_RS01085	SM00448	cheY-homologous receiver domain
RR42_RS01090	SM00387	Histidine kinase-like ATPases
RR42_RS01150	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS01150	SM00387	Histidine kinase-like ATPases
RR42_RS01150	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS01155	SM00448	cheY-homologous receiver domain
RR42_RS01155	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS01210	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RR42_RS01320	SM00382	ATPases associated with a variety of cellular activities
RR42_RS01330	SM00382	ATPases associated with a variety of cellular activities
RR42_RS01345	SM00881	CoA binding domain
RR42_RS01350	SM00878	Biotin carboxylase C-terminal domain
RR42_RS01375	SM00996	S-adenosyl-L-homocysteine hydrolase
RR42_RS01375	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
RR42_RS01440	SM00905	Dihydroneopterin aldolase
RR42_RS01465	SM00387	Histidine kinase-like ATPases
RR42_RS01470	SM00448	cheY-homologous receiver domain
RR42_RS01470	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS01480	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RR42_RS01480	SM00091	PAS domain
RR42_RS01480	SM00267	diguanylate cyclase
RR42_RS01495	SM00052	Putative diguanylate phosphodiesterase
RR42_RS01495	SM00091	PAS domain
RR42_RS01495	SM00267	diguanylate cyclase
RR42_RS01560	SM00052	Putative diguanylate phosphodiesterase
RR42_RS01560	SM00091	PAS domain
RR42_RS01560	SM00267	diguanylate cyclase
RR42_RS01570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS01590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS01615	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RR42_RS01615	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RR42_RS01620	SM00100	Cyclic nucleotide-monophosphate binding domain
RR42_RS01620	SM00419	helix_turn_helix, cAMP Regulatory protein
RR42_RS01630	SM00382	ATPases associated with a variety of cellular activities
RR42_RS01650	SM00382	ATPases associated with a variety of cellular activities
RR42_RS01670	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
RR42_RS01680	SM00936	Penicillin-binding protein 5, C-terminal domain 
RR42_RS01700	SM00387	Histidine kinase-like ATPases
RR42_RS01700	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS01705	SM00382	ATPases associated with a variety of cellular activities
RR42_RS01705	SM00448	cheY-homologous receiver domain
RR42_RS01740	SM00382	ATPases associated with a variety of cellular activities
RR42_RS01755	SM00938	Nitrogen regulatory protein P-II
RR42_RS01810	SM00450	Rhodanese Homology Domain
RR42_RS01820	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RR42_RS01820	SM00245	tail specific protease
RR42_RS01825	SM00855	Phosphoglycerate mutase family
RR42_RS01830	SM00450	Rhodanese Homology Domain
RR42_RS01945	SM00382	ATPases associated with a variety of cellular activities
RR42_RS01960	SM01012	RR42_RS01960
RR42_RS01975	SM00382	ATPases associated with a variety of cellular activities
RR42_RS01975	SM00962	SRP54-type protein, GTPase domain
RR42_RS01975	SM00963	SRP54-type protein, helical bundle domain
RR42_RS02015	SM01400	RR42_RS02015
RR42_RS02035	SM00028	Tetratricopeptide repeats
RR42_RS02040	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
RR42_RS02040	SM01232	RR42_RS02040
RR42_RS02050	SM00478	endonuclease III
RR42_RS02055	SM00464	Found in ATP-dependent protease La (LON)
RR42_RS02090	SM00382	ATPases associated with a variety of cellular activities
RR42_RS02105	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS02245	SM00858	RR42_RS02245
RR42_RS02250	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS02250	SM00866	RR42_RS02250
RR42_RS02290	SM00382	ATPases associated with a variety of cellular activities
RR42_RS02350	SM00327	von Willebrand factor (vWF) type A domain
RR42_RS02355	SM00382	ATPases associated with a variety of cellular activities
RR42_RS02360	SM01092	CO dehydrogenase flavoprotein C-terminal domain
RR42_RS02365	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RR42_RS02390	SM00382	ATPases associated with a variety of cellular activities
RR42_RS02405	SM00978	RR42_RS02405
RR42_RS02435	SM00834	Putative regulatory protein
RR42_RS02495	SM00155	Phospholipase D. Active site motifs.
RR42_RS02535	SM00382	ATPases associated with a variety of cellular activities
RR42_RS02545	SM00382	ATPases associated with a variety of cellular activities
RR42_RS02555	SM00344	helix_turn_helix ASNC type
RR42_RS02570	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
RR42_RS02575	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS02590	SM00382	ATPases associated with a variety of cellular activities
RR42_RS02600	SM01329	RR42_RS02600
RR42_RS02670	SM00363	S4 RNA-binding domain
RR42_RS02685	SM00855	Phosphoglycerate mutase family
RR42_RS02700	SM00382	ATPases associated with a variety of cellular activities
RR42_RS02705	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RR42_RS02720	SM00798	AICARFT/IMPCHase bienzyme
RR42_RS02720	SM00851	MGS-like domain
RR42_RS02745	SM01011	Aminopeptidase P, N-terminal domain
RR42_RS02785	SM00650	Ribosomal RNA adenine dimethylases
RR42_RS02810	SM00563	Phosphate acyltransferases
RR42_RS02820	SM00836	DALR anticodon binding domain
RR42_RS02840	SM01091	Transporter associated domain
RR42_RS02855	SM00729	Elongator protein 3, MiaB family, Radical SAM
RR42_RS02865	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS02870	SM00487	DEAD-like helicases superfamily
RR42_RS02870	SM00490	helicase superfamily c-terminal domain
RR42_RS02930	SM00344	helix_turn_helix ASNC type
RR42_RS02935	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
RR42_RS03005	SM00822	RR42_RS03005
RR42_RS03020	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS03070	SM00387	Histidine kinase-like ATPases
RR42_RS03070	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS03075	SM00448	cheY-homologous receiver domain
RR42_RS03075	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS03080	SM00382	ATPases associated with a variety of cellular activities
RR42_RS03100	SM00881	CoA binding domain
RR42_RS03135	SM01351	RR42_RS03135
RR42_RS03175	SM00487	DEAD-like helicases superfamily
RR42_RS03175	SM00490	helicase superfamily c-terminal domain
RR42_RS03195	SM00421	helix_turn_helix, Lux Regulon
RR42_RS03225	SM01001	AIR carboxylase
RR42_RS03250	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS03290	SM00448	cheY-homologous receiver domain
RR42_RS03290	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS03295	SM00387	Histidine kinase-like ATPases
RR42_RS03295	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS03320	SM00448	cheY-homologous receiver domain
RR42_RS03320	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS03325	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS03325	SM00387	Histidine kinase-like ATPases
RR42_RS03325	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS03335	SM01207	RR42_RS03335
RR42_RS03360	SM00382	ATPases associated with a variety of cellular activities
RR42_RS03415	SM00646	RR42_RS03415
RR42_RS03435	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS03510	SM00382	ATPases associated with a variety of cellular activities
RR42_RS03510	SM01086	C-terminal, D2-small domain, of ClpB protein
RR42_RS03630	SM00357	Cold shock protein domain
RR42_RS03755	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
RR42_RS03760	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RR42_RS03760	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
RR42_RS03830	SM00382	ATPases associated with a variety of cellular activities
RR42_RS03850	SM00671	Sel1-like repeats.
RR42_RS03860	SM00354	helix_turn _helix lactose operon repressor
RR42_RS03915	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RR42_RS03940	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS03945	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS03950	SM00344	helix_turn_helix ASNC type
RR42_RS03980	SM00382	ATPases associated with a variety of cellular activities
RR42_RS03980	SM00448	cheY-homologous receiver domain
RR42_RS03985	SM00387	Histidine kinase-like ATPases
RR42_RS03985	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS03995	SM00052	Putative diguanylate phosphodiesterase
RR42_RS03995	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RR42_RS03995	SM00091	PAS domain
RR42_RS03995	SM00267	diguanylate cyclase
RR42_RS04005	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RR42_RS04045	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
RR42_RS04050	SM00100	Cyclic nucleotide-monophosphate binding domain
RR42_RS04050	SM00419	helix_turn_helix, cAMP Regulatory protein
RR42_RS04070	SM00829	Enoylreductase
RR42_RS04075	SM00883	Chaperonin 10 Kd subunit
RR42_RS04135	SM00858	RR42_RS04135
RR42_RS04140	SM00382	ATPases associated with a variety of cellular activities
RR42_RS04185	SM00382	ATPases associated with a variety of cellular activities
RR42_RS04230	SM01130	RR42_RS04230
RR42_RS04245	SM00448	cheY-homologous receiver domain
RR42_RS04250	SM00448	cheY-homologous receiver domain
RR42_RS04255	SM00260	Two component signalling adaptor domain
RR42_RS04260	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RR42_RS04265	SM00073	Histidine Phosphotransfer domain
RR42_RS04265	SM00260	Two component signalling adaptor domain
RR42_RS04265	SM00387	Histidine kinase-like ATPases
RR42_RS04265	SM00448	cheY-homologous receiver domain
RR42_RS04265	SM01231	RR42_RS04265
RR42_RS04300	SM00938	Nitrogen regulatory protein P-II
RR42_RS04310	SM00463	Small MutS-related domain
RR42_RS04320	SM00843	RR42_RS04320
RR42_RS04350	SM00382	ATPases associated with a variety of cellular activities
RR42_RS04355	SM00382	ATPases associated with a variety of cellular activities
RR42_RS04375	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS04375	SM01091	Transporter associated domain
RR42_RS04390	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS04395	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS04395	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
RR42_RS04405	SM01209	RR42_RS04405
RR42_RS04415	SM00382	ATPases associated with a variety of cellular activities
RR42_RS04445	SM00434	DNA Topoisomerase IV
RR42_RS04460	SM00830	Chorismate mutase type II
RR42_RS04490	SM00316	Ribosomal protein S1-like RNA-binding domain
RR42_RS04495	SM00411	bacterial (prokaryotic) histone like domain
RR42_RS04505	SM00028	Tetratricopeptide repeats
RR42_RS04510	SM00984	UDP binding domain
RR42_RS04555	SM00382	ATPases associated with a variety of cellular activities
RR42_RS04555	SM00930	RR42_RS04555
RR42_RS04570	SM00893	Electron transfer flavoprotein domain
RR42_RS04575	SM00893	Electron transfer flavoprotein domain
RR42_RS04590	SM00344	helix_turn_helix ASNC type
RR42_RS04595	SM00729	Elongator protein 3, MiaB family, Radical SAM
RR42_RS04645	SM00450	Rhodanese Homology Domain
RR42_RS04650	SM00481	DNA polymerase alpha chain like domain
RR42_RS04670	SM00382	ATPases associated with a variety of cellular activities
RR42_RS04700	SM00316	Ribosomal protein S1-like RNA-binding domain
RR42_RS04730	SM01209	RR42_RS04730
RR42_RS04730	SM01210	RR42_RS04730
RR42_RS04770	SM00851	MGS-like domain
RR42_RS04775	SM00829	Enoylreductase
RR42_RS04800	SM00382	ATPases associated with a variety of cellular activities
RR42_RS04825	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS04825	SM00382	ATPases associated with a variety of cellular activities
RR42_RS04835	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS04835	SM00895	RR42_RS04835
RR42_RS04840	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
RR42_RS04880	SM00729	Elongator protein 3, MiaB family, Radical SAM
RR42_RS04895	SM00331	Sigma factor PP2C-like phosphatases
RR42_RS04895	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
RR42_RS04900	SM00220	Serine/Threonine protein kinases, catalytic domain
RR42_RS04910	SM00072	Guanylate kinase homologues.
RR42_RS04915	SM01409	RR42_RS04915
RR42_RS04920	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RR42_RS04920	SM00954	Region found in RelA / SpoT proteins
RR42_RS04960	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
RR42_RS04975	SM00267	diguanylate cyclase
RR42_RS04985	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS05055	SM00382	ATPases associated with a variety of cellular activities
RR42_RS05100	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RR42_RS05135	SM01130	RR42_RS05135
RR42_RS05165	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS05165	SM00895	RR42_RS05165
RR42_RS05210	SM00919	Malic enzyme, NAD binding domain
RR42_RS05210	SM01274	RR42_RS05210
RR42_RS05265	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS05265	SM00895	RR42_RS05265
RR42_RS05285	SM00564	beta-propeller repeat
RR42_RS05290	SM00248	ankyrin repeats
RR42_RS05335	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RR42_RS05340	SM01092	CO dehydrogenase flavoprotein C-terminal domain
RR42_RS05460	SM00257	Lysin motif
RR42_RS05465	SM00917	LeuA allosteric (dimerisation) domain
RR42_RS05480	SM01387	RR42_RS05480
RR42_RS05485	SM00316	Ribosomal protein S1-like RNA-binding domain
RR42_RS05485	SM00322	K homology RNA-binding domain
RR42_RS05490	SM00829	Enoylreductase
RR42_RS05535	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
RR42_RS05540	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
RR42_RS05650	SM00382	ATPases associated with a variety of cellular activities
RR42_RS05680	SM00988	UreE urease accessory protein, N-terminal domain
RR42_RS05700	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS05735	SM00327	von Willebrand factor (vWF) type A domain
RR42_RS05750	SM00855	Phosphoglycerate mutase family
RR42_RS05785	SM00631	RR42_RS05785
RR42_RS05845	SM00382	ATPases associated with a variety of cellular activities
RR42_RS05930	SM00363	S4 RNA-binding domain
RR42_RS05970	SM00478	endonuclease III
RR42_RS05995	SM00487	DEAD-like helicases superfamily
RR42_RS05995	SM00490	helicase superfamily c-terminal domain
RR42_RS06010	SM00226	Low molecular weight phosphatase family
RR42_RS06045	SM00271	DnaJ molecular chaperone homology domain
RR42_RS06075	SM00822	RR42_RS06075
RR42_RS06080	SM00937	RR42_RS06080
RR42_RS06085	SM00257	Lysin motif
RR42_RS06105	SM00382	ATPases associated with a variety of cellular activities
RR42_RS06115	SM00849	Metallo-beta-lactamase superfamily
RR42_RS06145	SM00460	Transglutaminase/protease-like homologues
RR42_RS06175	SM01192	RR42_RS06175
RR42_RS06175	SM01193	RR42_RS06175
RR42_RS06225	SM00481	DNA polymerase alpha chain like domain
RR42_RS06250	SM01130	RR42_RS06250
RR42_RS06260	SM00849	Metallo-beta-lactamase superfamily
RR42_RS06270	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
RR42_RS06285	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
RR42_RS06285	SM00534	ATPase domain of DNA mismatch repair MUTS family
RR42_RS06300	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS06345	SM00028	Tetratricopeptide repeats
RR42_RS06350	SM00840	RR42_RS06350
RR42_RS06355	SM00478	endonuclease III
RR42_RS06365	SM00977	TilS substrate C-terminal domain
RR42_RS06470	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS06475	SM00563	Phosphate acyltransferases
RR42_RS06500	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS06500	SM00895	RR42_RS06500
RR42_RS06520	SM00822	RR42_RS06520
RR42_RS06550	SM00421	helix_turn_helix, Lux Regulon
RR42_RS06555	SM00882	Coenzyme A transferase
RR42_RS06560	SM00882	Coenzyme A transferase
RR42_RS06585	SM00954	Region found in RelA / SpoT proteins
RR42_RS06600	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RR42_RS06625	SM00873	B3/4 domain
RR42_RS06625	SM00874	tRNA synthetase B5 domain
RR42_RS06625	SM00896	Ferredoxin-fold anticodon binding domain
RR42_RS06630	SM00411	bacterial (prokaryotic) histone like domain
RR42_RS06635	SM00422	helix_turn_helix, mercury resistance
RR42_RS06775	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RR42_RS06790	SM00487	DEAD-like helicases superfamily
RR42_RS06900	SM00506	Appr-1"-p processing enzyme
RR42_RS06930	SM00843	RR42_RS06930
RR42_RS07320	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS07330	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS07330	SM00866	RR42_RS07330
RR42_RS07355	SM00421	helix_turn_helix, Lux Regulon
RR42_RS07355	SM00448	cheY-homologous receiver domain
RR42_RS07360	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RR42_RS07360	SM00091	PAS domain
RR42_RS07360	SM00387	Histidine kinase-like ATPases
RR42_RS07360	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS07420	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS07420	SM00895	RR42_RS07420
RR42_RS07425	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS07445	SM00382	ATPases associated with a variety of cellular activities
RR42_RS07490	SM00953	RR42_RS07490
RR42_RS07515	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS07545	SM00382	ATPases associated with a variety of cellular activities
RR42_RS07550	SM00382	ATPases associated with a variety of cellular activities
RR42_RS07565	SM00316	Ribosomal protein S1-like RNA-binding domain
RR42_RS07565	SM00732	Likely ribonuclease with RNase H fold.
RR42_RS07580	SM00491	RR42_RS07580
RR42_RS07590	SM00363	S4 RNA-binding domain
RR42_RS07615	SM00822	RR42_RS07615
RR42_RS07640	SM00729	Elongator protein 3, MiaB family, Radical SAM
RR42_RS07705	SM00829	Enoylreductase
RR42_RS07735	SM00387	Histidine kinase-like ATPases
RR42_RS07735	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS07740	SM00448	cheY-homologous receiver domain
RR42_RS07740	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS07770	SM00880	RR42_RS07770
RR42_RS07775	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS07795	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RR42_RS07795	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS07800	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS07805	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS07815	SM00382	ATPases associated with a variety of cellular activities
RR42_RS07845	SM00487	DEAD-like helicases superfamily
RR42_RS07845	SM00490	helicase superfamily c-terminal domain
RR42_RS07845	SM00982	RR42_RS07845
RR42_RS07845	SM01058	CarD-like/TRCF domain
RR42_RS07880	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS07880	SM00387	Histidine kinase-like ATPases
RR42_RS07880	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS07885	SM00448	cheY-homologous receiver domain
RR42_RS07885	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS07930	SM00382	ATPases associated with a variety of cellular activities
RR42_RS07935	SM00382	ATPases associated with a variety of cellular activities
RR42_RS07960	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS07965	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS07965	SM00895	RR42_RS07965
RR42_RS08055	SM00479	RR42_RS08055
RR42_RS08080	SM00843	RR42_RS08080
RR42_RS08210	SM00380	DNA-binding domain in plant proteins such as APETALA2 and EREBPs
RR42_RS08490	SM01040	BRO family, N-terminal domain
RR42_RS08510	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS08710	SM00822	RR42_RS08710
RR42_RS08740	SM00487	DEAD-like helicases superfamily
RR42_RS08740	SM00490	helicase superfamily c-terminal domain
RR42_RS08755	SM00729	Elongator protein 3, MiaB family, Radical SAM
RR42_RS08760	SM00421	helix_turn_helix, Lux Regulon
RR42_RS08760	SM00448	cheY-homologous receiver domain
RR42_RS08765	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RR42_RS08765	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS08765	SM00387	Histidine kinase-like ATPases
RR42_RS08820	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RR42_RS08835	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
RR42_RS08835	SM00382	ATPases associated with a variety of cellular activities
RR42_RS08885	SM00100	Cyclic nucleotide-monophosphate binding domain
RR42_RS08885	SM00419	helix_turn_helix, cAMP Regulatory protein
RR42_RS08900	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS08900	SM00387	Histidine kinase-like ATPases
RR42_RS08905	SM00421	helix_turn_helix, Lux Regulon
RR42_RS08905	SM00448	cheY-homologous receiver domain
RR42_RS08915	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RR42_RS08950	SM00947	Carbonic anhydrase
RR42_RS08970	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS08985	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RR42_RS08985	SM00091	PAS domain
RR42_RS08985	SM00267	diguanylate cyclase
RR42_RS09025	SM00382	ATPases associated with a variety of cellular activities
RR42_RS09025	SM00994	ClpX C4-type zinc finger
RR42_RS09025	SM01086	C-terminal, D2-small domain, of ClpB protein
RR42_RS09030	SM00382	ATPases associated with a variety of cellular activities
RR42_RS09030	SM00464	Found in ATP-dependent protease La (LON)
RR42_RS09055	SM00382	ATPases associated with a variety of cellular activities
RR42_RS09125	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RR42_RS09135	SM00849	Metallo-beta-lactamase superfamily
RR42_RS09140	SM01211	RR42_RS09140
RR42_RS09165	SM00448	cheY-homologous receiver domain
RR42_RS09165	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS09170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS09170	SM00387	Histidine kinase-like ATPases
RR42_RS09170	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS09190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS09240	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS09265	SM00849	Metallo-beta-lactamase superfamily
RR42_RS09280	SM01351	RR42_RS09280
RR42_RS09310	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS09335	SM00486	DNA polymerase type-B family
RR42_RS09380	SM00829	Enoylreductase
RR42_RS09390	SM00382	ATPases associated with a variety of cellular activities
RR42_RS09390	SM00421	helix_turn_helix, Lux Regulon
RR42_RS09405	SM00829	Enoylreductase
RR42_RS09410	SM00382	ATPases associated with a variety of cellular activities
RR42_RS09435	SM00986	Uracil DNA glycosylase superfamily
RR42_RS09435	SM00987	UreE urease accessory protein, C-terminal domain 
RR42_RS09480	SM00382	ATPases associated with a variety of cellular activities
RR42_RS09495	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS09500	SM00354	helix_turn _helix lactose operon repressor
RR42_RS09520	SM00448	cheY-homologous receiver domain
RR42_RS09520	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS09525	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS09525	SM00387	Histidine kinase-like ATPases
RR42_RS09535	SM00342	helix_turn_helix, arabinose operon control protein
RR42_RS09585	SM00100	Cyclic nucleotide-monophosphate binding domain
RR42_RS09585	SM00419	helix_turn_helix, cAMP Regulatory protein
RR42_RS09595	SM00091	PAS domain
RR42_RS09595	SM00387	Histidine kinase-like ATPases
RR42_RS09600	SM00421	helix_turn_helix, Lux Regulon
RR42_RS09600	SM00448	cheY-homologous receiver domain
RR42_RS09610	SM00849	Metallo-beta-lactamase superfamily
RR42_RS09610	SM01027	Beta-Casp domain
RR42_RS09650	SM00869	Autotransporter beta-domain
RR42_RS09710	SM00052	Putative diguanylate phosphodiesterase
RR42_RS09715	SM00421	helix_turn_helix, Lux Regulon
RR42_RS09715	SM00448	cheY-homologous receiver domain
RR42_RS09720	SM00387	Histidine kinase-like ATPases
RR42_RS09720	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS09720	SM00448	cheY-homologous receiver domain
RR42_RS09735	SM00382	ATPases associated with a variety of cellular activities
RR42_RS09745	SM00829	Enoylreductase
RR42_RS09770	SM00881	CoA binding domain
RR42_RS09790	SM00382	ATPases associated with a variety of cellular activities
RR42_RS09815	SM00052	Putative diguanylate phosphodiesterase
RR42_RS09815	SM00091	PAS domain
RR42_RS09815	SM00267	diguanylate cyclase
RR42_RS09895	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
RR42_RS09965	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS09980	SM00052	Putative diguanylate phosphodiesterase
RR42_RS09980	SM00267	diguanylate cyclase
RR42_RS09980	SM01079	RR42_RS09980
RR42_RS09990	SM00267	diguanylate cyclase
RR42_RS09995	SM00849	Metallo-beta-lactamase superfamily
RR42_RS10005	SM00882	Coenzyme A transferase
RR42_RS10010	SM00882	Coenzyme A transferase
RR42_RS10085	SM00824	Thioesterase
RR42_RS10105	SM00382	ATPases associated with a variety of cellular activities
RR42_RS10110	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS10125	SM00052	Putative diguanylate phosphodiesterase
RR42_RS10125	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RR42_RS10125	SM00091	PAS domain
RR42_RS10125	SM00267	diguanylate cyclase
RR42_RS10125	SM01079	RR42_RS10125
RR42_RS10190	SM00421	helix_turn_helix, Lux Regulon
RR42_RS10190	SM00448	cheY-homologous receiver domain
RR42_RS10195	SM00387	Histidine kinase-like ATPases
RR42_RS10200	SM00421	helix_turn_helix, Lux Regulon
RR42_RS10210	SM00829	Enoylreductase
RR42_RS10275	SM00421	helix_turn_helix, Lux Regulon
RR42_RS10275	SM00448	cheY-homologous receiver domain
RR42_RS10280	SM00091	PAS domain
RR42_RS10280	SM00387	Histidine kinase-like ATPases
RR42_RS10320	SM00822	RR42_RS10320
RR42_RS10340	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS10340	SM00895	RR42_RS10340
RR42_RS10345	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
RR42_RS10355	SM00344	helix_turn_helix ASNC type
RR42_RS10365	SM00382	ATPases associated with a variety of cellular activities
RR42_RS10370	SM00382	ATPases associated with a variety of cellular activities
RR42_RS10465	SM00945	ProQ/FINO family
RR42_RS10485	SM00091	PAS domain
RR42_RS10485	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS10490	SM00528	Domain in histone-like proteins of HNS family
RR42_RS10520	SM00822	RR42_RS10520
RR42_RS10545	SM00829	Enoylreductase
RR42_RS10580	SM00829	Enoylreductase
RR42_RS10610	SM00354	helix_turn _helix lactose operon repressor
RR42_RS10625	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
RR42_RS10640	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
RR42_RS10640	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
RR42_RS10660	SM00861	Transketolase, pyrimidine binding domain
RR42_RS10720	SM00882	Coenzyme A transferase
RR42_RS10735	SM00382	ATPases associated with a variety of cellular activities
RR42_RS10785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS10815	SM00382	ATPases associated with a variety of cellular activities
RR42_RS10820	SM00382	ATPases associated with a variety of cellular activities
RR42_RS10850	SM00382	ATPases associated with a variety of cellular activities
RR42_RS10850	SM00843	RR42_RS10850
RR42_RS10855	SM00052	Putative diguanylate phosphodiesterase
RR42_RS10855	SM00448	cheY-homologous receiver domain
RR42_RS10880	SM00248	ankyrin repeats
RR42_RS10955	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS10955	SM00895	RR42_RS10955
RR42_RS10970	SM01007	Class II Aldolase and Adducin N-terminal domain
RR42_RS11010	SM00506	Appr-1"-p processing enzyme
RR42_RS11015	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS11045	SM00822	RR42_RS11045
RR42_RS11050	SM01007	Class II Aldolase and Adducin N-terminal domain
RR42_RS11055	SM00829	Enoylreductase
RR42_RS11070	SM00822	RR42_RS11070
RR42_RS11130	SM00382	ATPases associated with a variety of cellular activities
RR42_RS11135	SM00382	ATPases associated with a variety of cellular activities
RR42_RS11195	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RR42_RS11200	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS11230	SM00382	ATPases associated with a variety of cellular activities
RR42_RS11235	SM00382	ATPases associated with a variety of cellular activities
RR42_RS11255	SM00091	PAS domain
RR42_RS11255	SM00382	ATPases associated with a variety of cellular activities
RR42_RS11295	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS11295	SM00895	RR42_RS11295
RR42_RS11370	SM00382	ATPases associated with a variety of cellular activities
RR42_RS11435	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS11445	SM00382	ATPases associated with a variety of cellular activities
RR42_RS11450	SM00849	Metallo-beta-lactamase superfamily
RR42_RS11485	SM00564	beta-propeller repeat
RR42_RS11490	SM00849	Metallo-beta-lactamase superfamily
RR42_RS11520	SM00382	ATPases associated with a variety of cellular activities
RR42_RS11530	SM00421	helix_turn_helix, Lux Regulon
RR42_RS11530	SM00448	cheY-homologous receiver domain
RR42_RS11535	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS11565	SM00052	Putative diguanylate phosphodiesterase
RR42_RS11565	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RR42_RS11565	SM00091	PAS domain
RR42_RS11565	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS11565	SM00267	diguanylate cyclase
RR42_RS11600	SM00903	Flavin reductase like domain
RR42_RS11605	SM00749	bacterial OsmY and nodulation domain
RR42_RS11630	SM00831	Cation transporter/ATPase, N-terminus
RR42_RS11635	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS11670	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
RR42_RS11675	SM01400	RR42_RS11675
RR42_RS11700	SM00749	bacterial OsmY and nodulation domain
RR42_RS11750	SM00116	Domain in cystathionine beta-synthase and other proteins.
RR42_RS11750	SM01240	RR42_RS11750
RR42_RS11780	SM00244	prohibitin homologues
RR42_RS11830	SM00935	Outer membrane protein (OmpH-like)
RR42_RS11840	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RR42_RS11885	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RR42_RS11890	SM00363	S4 RNA-binding domain
RR42_RS11905	SM00278	Helix-hairpin-helix DNA-binding motif class 1
RR42_RS11905	SM00292	breast cancer carboxy-terminal domain
RR42_RS11905	SM00532	Ligase N family
RR42_RS11910	SM00771	ZipA, C-terminal domain (FtsZ-binding)
RR42_RS11915	SM00968	SMC proteins Flexible Hinge Domain
RR42_RS11995	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12010	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12030	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12035	SM01005	Alanine racemase, C-terminal domain
RR42_RS12050	SM00986	Uracil DNA glycosylase superfamily
RR42_RS12050	SM00987	UreE urease accessory protein, C-terminal domain 
RR42_RS12120	SM00387	Histidine kinase-like ATPases
RR42_RS12120	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS12120	SM00448	cheY-homologous receiver domain
RR42_RS12125	SM00421	helix_turn_helix, Lux Regulon
RR42_RS12125	SM00448	cheY-homologous receiver domain
RR42_RS12130	SM00421	helix_turn_helix, Lux Regulon
RR42_RS12135	SM00387	Histidine kinase-like ATPases
RR42_RS12135	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS12145	SM00912	haemagglutination activity domain
RR42_RS12225	SM00448	cheY-homologous receiver domain
RR42_RS12225	SM00850	LytTr DNA-binding domain
RR42_RS12230	SM00387	Histidine kinase-like ATPases
RR42_RS12250	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12280	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12345	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS12380	SM00834	Putative regulatory protein
RR42_RS12395	SM00091	PAS domain
RR42_RS12395	SM00421	helix_turn_helix, Lux Regulon
RR42_RS12400	SM00387	Histidine kinase-like ATPases
RR42_RS12405	SM00052	Putative diguanylate phosphodiesterase
RR42_RS12405	SM00448	cheY-homologous receiver domain
RR42_RS12455	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12455	SM01086	C-terminal, D2-small domain, of ClpB protein
RR42_RS12485	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12490	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12530	SM00852	Probable molybdopterin binding domain
RR42_RS12560	SM00670	Large family of predicted nucleotide-binding domains
RR42_RS12585	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12610	SM00870	RR42_RS12610
RR42_RS12675	SM00387	Histidine kinase-like ATPases
RR42_RS12700	SM00331	Sigma factor PP2C-like phosphatases
RR42_RS12700	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
RR42_RS12705	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12710	SM00100	Cyclic nucleotide-monophosphate binding domain
RR42_RS12710	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12725	SM00240	Forkhead associated domain
RR42_RS12760	SM00115	Caspase, interleukin-1 beta converting enzyme (ICE) homologues
RR42_RS12800	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RR42_RS12800	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS12815	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS12850	SM00316	Ribosomal protein S1-like RNA-binding domain
RR42_RS12850	SM00322	K homology RNA-binding domain
RR42_RS12860	SM00363	S4 RNA-binding domain
RR42_RS12875	SM00100	Cyclic nucleotide-monophosphate binding domain
RR42_RS12875	SM00419	helix_turn_helix, cAMP Regulatory protein
RR42_RS12940	SM00861	Transketolase, pyrimidine binding domain
RR42_RS12955	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12980	SM00382	ATPases associated with a variety of cellular activities
RR42_RS12980	SM00448	cheY-homologous receiver domain
RR42_RS12985	SM00387	Histidine kinase-like ATPases
RR42_RS12985	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS12995	SM01230	RR42_RS12995
RR42_RS13005	SM00852	Probable molybdopterin binding domain
RR42_RS13030	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13030	SM00487	DEAD-like helicases superfamily
RR42_RS13030	SM00490	helicase superfamily c-terminal domain
RR42_RS13030	SM00847	Helicase associated domain (HA2)  Add an annotation
RR42_RS13060	SM00967	RNA 2'-O ribose methyltransferase substrate binding
RR42_RS13065	SM00316	Ribosomal protein S1-like RNA-binding domain
RR42_RS13065	SM00357	Cold shock protein domain
RR42_RS13065	SM00955	RR42_RS13065
RR42_RS13090	SM00788	Adenylosuccinate synthetase
RR42_RS13100	SM00244	prohibitin homologues
RR42_RS13105	SM00244	prohibitin homologues
RR42_RS13120	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13125	SM00564	beta-propeller repeat
RR42_RS13150	SM00028	Tetratricopeptide repeats
RR42_RS13160	SM00562	RR42_RS13160
RR42_RS13190	SM00257	Lysin motif
RR42_RS13205	SM00829	Enoylreductase
RR42_RS13215	SM00448	cheY-homologous receiver domain
RR42_RS13215	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS13220	SM00387	Histidine kinase-like ATPases
RR42_RS13220	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS13240	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13245	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS13270	SM00493	RR42_RS13270
RR42_RS13285	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13315	SM00357	Cold shock protein domain
RR42_RS13315	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13315	SM00959	Rho termination factor, N-terminal domain
RR42_RS13370	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13405	SM00267	diguanylate cyclase
RR42_RS13420	SM00855	Phosphoglycerate mutase family
RR42_RS13440	SM00387	Histidine kinase-like ATPases
RR42_RS13440	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS13445	SM00448	cheY-homologous receiver domain
RR42_RS13445	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS13455	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13485	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13495	SM01103	RR42_RS13495
RR42_RS13510	SM00851	MGS-like domain
RR42_RS13510	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
RR42_RS13520	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
RR42_RS13550	SM00822	RR42_RS13550
RR42_RS13565	SM00257	Lysin motif
RR42_RS13570	SM00849	Metallo-beta-lactamase superfamily
RR42_RS13585	SM00479	RR42_RS13585
RR42_RS13610	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS13625	SM01092	CO dehydrogenase flavoprotein C-terminal domain
RR42_RS13630	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
RR42_RS13640	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS13680	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS13785	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13790	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13795	SM00420	helix_turn_helix, Deoxyribose operon repressor
RR42_RS13795	SM01134	RR42_RS13795
RR42_RS13890	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS13890	SM00387	Histidine kinase-like ATPases
RR42_RS13890	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS13895	SM00448	cheY-homologous receiver domain
RR42_RS13895	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS13915	SM00382	ATPases associated with a variety of cellular activities
RR42_RS13975	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
RR42_RS13975	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS14000	SM00465	GIY-YIG type nucleases (URI domain)
RR42_RS14010	SM00841	Elongation factor P, C-terminal
RR42_RS14010	SM01185	RR42_RS14010
RR42_RS14040	SM00358	Double-stranded RNA binding motif
RR42_RS14040	SM00535	Ribonuclease III family
RR42_RS14055	SM00838	Elongation factor G C-terminus
RR42_RS14065	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RR42_RS14090	SM00825	Beta-ketoacyl synthase
RR42_RS14095	SM00823	Phosphopantetheine attachment site
RR42_RS14100	SM00822	RR42_RS14100
RR42_RS14105	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
RR42_RS14155	SM00363	S4 RNA-binding domain
RR42_RS14160	SM00316	Ribosomal protein S1-like RNA-binding domain
RR42_RS14165	SM00729	Elongator protein 3, MiaB family, Radical SAM
RR42_RS14175	SM00852	Probable molybdopterin binding domain
RR42_RS14240	SM00838	Elongation factor G C-terminus
RR42_RS14240	SM00889	Elongation factor G, domain IV
RR42_RS14260	SM00448	cheY-homologous receiver domain
RR42_RS14260	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS14265	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS14265	SM00387	Histidine kinase-like ATPases
RR42_RS14265	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS14275	SM00357	Cold shock protein domain
RR42_RS14295	SM00382	ATPases associated with a variety of cellular activities
RR42_RS14310	SM00382	ATPases associated with a variety of cellular activities
RR42_RS14380	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RR42_RS14385	SM01329	RR42_RS14385
RR42_RS14405	SM00382	ATPases associated with a variety of cellular activities
RR42_RS14410	SM00382	ATPases associated with a variety of cellular activities
RR42_RS14460	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS14460	SM00866	RR42_RS14460
RR42_RS14550	SM00986	Uracil DNA glycosylase superfamily
RR42_RS14550	SM00987	UreE urease accessory protein, C-terminal domain 
RR42_RS14555	SM00387	Histidine kinase-like ATPases
RR42_RS14560	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS14570	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RR42_RS14650	SM00382	ATPases associated with a variety of cellular activities
RR42_RS14665	SM00434	DNA Topoisomerase IV
RR42_RS14675	SM00387	Histidine kinase-like ATPases
RR42_RS14675	SM00433	TopoisomeraseII
RR42_RS14685	SM00382	ATPases associated with a variety of cellular activities
RR42_RS14690	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS14690	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
RR42_RS14720	SM00487	DEAD-like helicases superfamily
RR42_RS14720	SM00490	helicase superfamily c-terminal domain
RR42_RS14760	SM00852	Probable molybdopterin binding domain
RR42_RS14770	SM00479	RR42_RS14770
RR42_RS14810	SM00487	DEAD-like helicases superfamily
RR42_RS14810	SM00490	helicase superfamily c-terminal domain
RR42_RS14825	SM00244	prohibitin homologues
RR42_RS14835	SM00882	Coenzyme A transferase
RR42_RS14840	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS14845	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS14875	SM00912	haemagglutination activity domain
RR42_RS14890	SM00965	Secretin and TonB N terminus short domain
RR42_RS14895	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RR42_RS14935	SM00560	LamG-like jellyroll fold domain
RR42_RS14975	SM00400	zinc finger
RR42_RS14975	SM00493	RR42_RS14975
RR42_RS14975	SM00766	DNA primase DnaG DnaB-binding
RR42_RS15005	SM00861	Transketolase, pyrimidine binding domain
RR42_RS15030	SM00450	Rhodanese Homology Domain
RR42_RS15050	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
RR42_RS15050	SM00474	3'-5' exonuclease
RR42_RS15050	SM00475	5'-3' exonuclease
RR42_RS15050	SM00482	DNA polymerase A domain
RR42_RS15080	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS15080	SM00866	RR42_RS15080
RR42_RS15125	SM01007	Class II Aldolase and Adducin N-terminal domain
RR42_RS15145	SM00244	prohibitin homologues
RR42_RS15150	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
RR42_RS15170	SM01091	Transporter associated domain
RR42_RS15235	SM00867	YceI-like domain 
RR42_RS15250	SM01322	RR42_RS15250
RR42_RS15275	SM00248	ankyrin repeats
RR42_RS15365	SM00903	Flavin reductase like domain
RR42_RS15370	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS15375	SM00344	helix_turn_helix ASNC type
RR42_RS15395	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS15665	SM00450	Rhodanese Homology Domain
RR42_RS15775	SM00858	RR42_RS15775
RR42_RS15820	SM00984	UDP binding domain
RR42_RS15850	SM00563	Phosphate acyltransferases
RR42_RS15870	SM00732	Likely ribonuclease with RNase H fold.
RR42_RS15980	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RR42_RS16110	SM00855	Phosphoglycerate mutase family
RR42_RS16130	SM00382	ATPases associated with a variety of cellular activities
RR42_RS16190	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS16190	SM00895	RR42_RS16190
RR42_RS16370	SM00382	ATPases associated with a variety of cellular activities
RR42_RS16380	SM00822	RR42_RS16380
RR42_RS16395	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS16445	SM00382	ATPases associated with a variety of cellular activities
RR42_RS16470	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS16475	SM00838	Elongation factor G C-terminus
RR42_RS16475	SM00889	Elongation factor G, domain IV
RR42_RS16480	SM00052	Putative diguanylate phosphodiesterase
RR42_RS16480	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
RR42_RS16480	SM00267	diguanylate cyclase
RR42_RS16505	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
RR42_RS16645	SM00859	Semialdehyde dehydrogenase, NAD binding domain
RR42_RS16735	SM00448	cheY-homologous receiver domain
RR42_RS16735	SM00850	LytTr DNA-binding domain
RR42_RS16775	SM00829	Enoylreductase
RR42_RS16800	SM00822	RR42_RS16800
RR42_RS16825	SM00342	helix_turn_helix, arabinose operon control protein
RR42_RS16850	SM00044	Adenylyl- / guanylyl cyclase, catalytic domain
RR42_RS16925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS16925	SM00866	RR42_RS16925
RR42_RS16930	SM00382	ATPases associated with a variety of cellular activities
RR42_RS16940	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS16960	SM00382	ATPases associated with a variety of cellular activities
RR42_RS16965	SM00382	ATPases associated with a variety of cellular activities
RR42_RS17055	SM00421	helix_turn_helix, Lux Regulon
RR42_RS17055	SM00448	cheY-homologous receiver domain
RR42_RS17060	SM00387	Histidine kinase-like ATPases
RR42_RS17060	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS17060	SM00448	cheY-homologous receiver domain
RR42_RS17065	SM00904	Riboflavin kinase
RR42_RS17105	SM00382	ATPases associated with a variety of cellular activities
RR42_RS17105	SM01086	C-terminal, D2-small domain, of ClpB protein
RR42_RS17115	SM00357	Cold shock protein domain
RR42_RS17135	SM01329	RR42_RS17135
RR42_RS17205	SM00853	MutL C terminal dimerisation domain
RR42_RS17205	SM01340	RR42_RS17205
RR42_RS17260	SM00382	ATPases associated with a variety of cellular activities
RR42_RS17270	SM00271	DnaJ molecular chaperone homology domain
RR42_RS17350	SM00382	ATPases associated with a variety of cellular activities
RR42_RS17380	SM01060	RR42_RS17380
RR42_RS17390	SM00487	DEAD-like helicases superfamily
RR42_RS17390	SM00490	helicase superfamily c-terminal domain
RR42_RS17405	SM01323	RR42_RS17405
RR42_RS17420	SM00448	cheY-homologous receiver domain
RR42_RS17425	SM00387	Histidine kinase-like ATPases
RR42_RS17425	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS17425	SM00448	cheY-homologous receiver domain
RR42_RS17430	SM00387	Histidine kinase-like ATPases
RR42_RS17430	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS17440	SM00867	YceI-like domain 
RR42_RS17445	SM00867	YceI-like domain 
RR42_RS17475	SM01130	RR42_RS17475
RR42_RS17490	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
RR42_RS17490	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
RR42_RS17515	SM00981	RR42_RS17515
RR42_RS17570	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
RR42_RS17575	SM00861	Transketolase, pyrimidine binding domain
RR42_RS17610	SM00919	Malic enzyme, NAD binding domain
RR42_RS17610	SM01274	RR42_RS17610
RR42_RS17630	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
RR42_RS17655	SM00955	RR42_RS17655
RR42_RS17660	SM00822	RR42_RS17660
RR42_RS17700	SM00878	Biotin carboxylase C-terminal domain
RR42_RS17775	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
RR42_RS17825	SM00346	helix_turn_helix isocitrate lyase regulation
RR42_RS17865	SM00644	RR42_RS17865
RR42_RS17870	SM00382	ATPases associated with a variety of cellular activities
RR42_RS17870	SM00448	cheY-homologous receiver domain
RR42_RS17875	SM00387	Histidine kinase-like ATPases
RR42_RS17875	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS17890	SM00382	ATPases associated with a variety of cellular activities
RR42_RS17890	SM00962	SRP54-type protein, GTPase domain
RR42_RS17890	SM00963	SRP54-type protein, helical bundle domain
RR42_RS17910	SM00342	helix_turn_helix, arabinose operon control protein
RR42_RS17915	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
RR42_RS17940	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
RR42_RS18015	SM00382	ATPases associated with a variety of cellular activities
RR42_RS18025	SM00957	SecA DEAD-like domain
RR42_RS18025	SM00958	SecA preprotein cross-linking domain
RR42_RS18050	SM00864	Tubulin/FtsZ family, GTPase domain
RR42_RS18050	SM00865	Tubulin/FtsZ family, C-terminal domain
RR42_RS18055	SM00842	Cell division protein FtsA
RR42_RS18140	SM00347	helix_turn_helix multiple antibiotic resistance protein
RR42_RS18165	SM00878	Biotin carboxylase C-terminal domain
RR42_RS18180	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
RR42_RS18190	SM00382	ATPases associated with a variety of cellular activities
RR42_RS18195	SM00382	ATPases associated with a variety of cellular activities
RR42_RS18270	SM00925	MltA specific insert domain
RR42_RS18315	SM01118	RR42_RS18315
RR42_RS18320	SM00986	Uracil DNA glycosylase superfamily
RR42_RS18320	SM00987	UreE urease accessory protein, C-terminal domain 
RR42_RS18335	SM00382	ATPases associated with a variety of cellular activities
RR42_RS18350	SM00829	Enoylreductase
RR42_RS18435	SM00670	Large family of predicted nucleotide-binding domains
RR42_RS18470	SM00937	RR42_RS18470
RR42_RS18510	SM00344	helix_turn_helix ASNC type
RR42_RS18575	SM00382	ATPases associated with a variety of cellular activities
RR42_RS18580	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS18580	SM00895	RR42_RS18580
RR42_RS18675	SM00487	DEAD-like helicases superfamily
RR42_RS18690	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS18735	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS18840	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RR42_RS18940	SM00382	ATPases associated with a variety of cellular activities
RR42_RS18970	SM00382	ATPases associated with a variety of cellular activities
RR42_RS18995	SM01321	RR42_RS18995
RR42_RS19000	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
RR42_RS19015	SM00965	Secretin and TonB N terminus short domain
RR42_RS19035	SM00842	Cell division protein FtsA
RR42_RS19045	SM01219	RR42_RS19045
RR42_RS19100	SM01004	Delta-aminolevulinic acid dehydratase
RR42_RS19125	SM00662	RNA polymerases D
RR42_RS19130	SM00363	S4 RNA-binding domain
RR42_RS19130	SM01390	RR42_RS19130
RR42_RS19150	SM00316	Ribosomal protein S1-like RNA-binding domain
RR42_RS19200	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
RR42_RS19205	SM01374	RR42_RS19205
RR42_RS19225	SM00322	K homology RNA-binding domain
RR42_RS19240	SM01382	RR42_RS19240
RR42_RS19240	SM01383	RR42_RS19240
RR42_RS19260	SM00903	Flavin reductase like domain
RR42_RS19280	SM00342	helix_turn_helix, arabinose operon control protein
RR42_RS19285	SM01403	RR42_RS19285
RR42_RS19295	SM00838	Elongation factor G C-terminus
RR42_RS19295	SM00889	Elongation factor G, domain IV
RR42_RS19310	SM00341	Helicase and RNase D C-terminal
RR42_RS19310	SM00487	DEAD-like helicases superfamily
RR42_RS19310	SM00490	helicase superfamily c-terminal domain
RR42_RS19310	SM00956	RR42_RS19310
RR42_RS19315	SM00663	RNA polymerase I subunit A N-terminus
RR42_RS19340	SM00649	Ribosomal protein L11/L12
RR42_RS19345	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
RR42_RS19345	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
RR42_RS19410	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS19410	SM00895	RR42_RS19410
RR42_RS19465	SM00344	helix_turn_helix ASNC type
RR42_RS19470	SM00054	EF-hand, calcium binding motif
RR42_RS19525	SM00382	ATPases associated with a variety of cellular activities
RR42_RS19710	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
RR42_RS19725	SM00749	bacterial OsmY and nodulation domain
RR42_RS19750	SM00849	Metallo-beta-lactamase superfamily
RR42_RS19795	SM00345	helix_turn_helix gluconate operon transcriptional repressor
RR42_RS19795	SM00895	RR42_RS19795
RR42_RS19900	SM00422	helix_turn_helix, mercury resistance
RR42_RS19945	SM00342	helix_turn_helix, arabinose operon control protein
RR42_RS19975	SM00382	ATPases associated with a variety of cellular activities
RR42_RS19985	SM00448	cheY-homologous receiver domain
RR42_RS19985	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS19990	SM00387	Histidine kinase-like ATPases
RR42_RS19990	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS20025	SM00729	Elongator protein 3, MiaB family, Radical SAM
RR42_RS20035	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS20035	SM00387	Histidine kinase-like ATPases
RR42_RS20035	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS20040	SM00448	cheY-homologous receiver domain
RR42_RS20040	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS20090	SM00849	Metallo-beta-lactamase superfamily
RR42_RS20130	SM00487	DEAD-like helicases superfamily
RR42_RS20130	SM00490	helicase superfamily c-terminal domain
RR42_RS20145	SM00881	CoA binding domain
RR42_RS20160	SM00382	ATPases associated with a variety of cellular activities
RR42_RS20200	SM00470	ParB-like nuclease domain
RR42_RS20215	SM01228	RR42_RS20215
RR42_RS20235	SM00382	ATPases associated with a variety of cellular activities
RR42_RS20240	SM00382	ATPases associated with a variety of cellular activities
RR42_RS20280	SM00382	ATPases associated with a variety of cellular activities
RR42_RS20285	SM00382	ATPases associated with a variety of cellular activities
RR42_RS20300	SM00422	helix_turn_helix, mercury resistance
RR42_RS20355	SM01359	RR42_RS20355
RR42_RS20355	SM01360	RR42_RS20355
RR42_RS20360	SM00344	helix_turn_helix ASNC type
RR42_RS20375	SM00448	cheY-homologous receiver domain
RR42_RS20375	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS20380	SM00387	Histidine kinase-like ATPases
RR42_RS20380	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS20385	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
RR42_RS20385	SM00508	Cysteine-rich motif following a subset of SET domains
RR42_RS20390	SM00411	bacterial (prokaryotic) histone like domain
RR42_RS20400	SM01007	Class II Aldolase and Adducin N-terminal domain
RR42_RS20435	SM00448	cheY-homologous receiver domain
RR42_RS20440	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS20440	SM00387	Histidine kinase-like ATPases
RR42_RS20440	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS20490	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
RR42_RS20490	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
RR42_RS20490	SM00493	RR42_RS20490
RR42_RS20520	SM00387	Histidine kinase-like ATPases
RR42_RS20520	SM01049	RR42_RS20520
RR42_RS20525	SM00421	helix_turn_helix, Lux Regulon
RR42_RS20525	SM00448	cheY-homologous receiver domain
RR42_RS20625	SM00387	Histidine kinase-like ATPases
RR42_RS20625	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS20630	SM00448	cheY-homologous receiver domain
RR42_RS20630	SM00862	Transcriptional regulatory protein, C terminal
RR42_RS20675	SM00344	helix_turn_helix ASNC type
RR42_RS20710	SM00342	helix_turn_helix, arabinose operon control protein
RR42_RS20720	SM00822	RR42_RS20720
RR42_RS20740	SM00422	helix_turn_helix, mercury resistance
RR42_RS20800	SM00342	helix_turn_helix, arabinose operon control protein
RR42_RS20800	SM00871	Bacterial transcription activator, effector binding domain
RR42_RS20810	SM00880	RR42_RS20810
RR42_RS21470	SM00460	Transglutaminase/protease-like homologues
RR42_RS21750	SM00422	helix_turn_helix, mercury resistance
RR42_RS23430	SM01329	RR42_RS23430
RR42_RS23560	SM01011	Aminopeptidase P, N-terminal domain
RR42_RS24135	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS24135	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS24995	SM00073	Histidine Phosphotransfer domain
RR42_RS25755	SM00382	ATPases associated with a variety of cellular activities
RR42_RS27165	SM00874	tRNA synthetase B5 domain
RR42_RS28680	SM01040	BRO family, N-terminal domain
RR42_RS32555	SM00670	Large family of predicted nucleotide-binding domains
RR42_RS33030	SM00357	Cold shock protein domain
RR42_RS33030	SM00955	RR42_RS33030
RR42_RS33415	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
RR42_RS33730	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
RR42_RS33730	SM00388	His Kinase A (phosphoacceptor) domain
RR42_RS33810	SM00465	GIY-YIG type nucleases (URI domain)
RR42_RS34450	SM00434	DNA Topoisomerase IV
RR42_RS34685	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
RR42_RS37420	SM00962	SRP54-type protein, GTPase domain
RR42_RS37540	SM01351	RR42_RS37540
RR42_RS37590	SM00421	helix_turn_helix, Lux Regulon
RR42_RS37615	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS37695	SM00448	cheY-homologous receiver domain
RR42_RS37705	SM00912	haemagglutination activity domain
RR42_RS37715	SM00421	helix_turn_helix, Lux Regulon
RR42_RS37725	SM00421	helix_turn_helix, Lux Regulon
RR42_RS37745	SM00530	Helix-turn-helix XRE-family like proteins 
RR42_RS37780	SM00062	Bacterial periplasmic substrate-binding proteins
RR42_RS37805	SM01351	RR42_RS37805
