locus-tag	class	description
DEIMA_RS00010	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DEIMA_RS00015	COG0592	DNA-directed DNA polymerase activity
DEIMA_RS00020	COG0148	phosphopyruvate hydratase activity
DEIMA_RS00025	COG0469	pyruvate kinase activity
DEIMA_RS00030	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DEIMA_RS00055	COG0252	asparaginase activity
DEIMA_RS00070	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
DEIMA_RS00070	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
DEIMA_RS00075	COG1268	BioY protein
DEIMA_RS00080	COG0135	phosphoribosylanthranilate isomerase activity
DEIMA_RS00095	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DEIMA_RS00105	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DEIMA_RS00115	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DEIMA_RS00120	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
DEIMA_RS00125	COG1496	oxidoreductase activity
DEIMA_RS00130	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DEIMA_RS00135	COG1363	Peptidase, m42
DEIMA_RS00145	COG3483	tryptophan 2,3-dioxygenase activity
DEIMA_RS00160	COG0556	nucleotide-excision repair
DEIMA_RS00165	COG0534	Mate efflux family protein
DEIMA_RS00200	COG0740	serine-type endopeptidase activity
DEIMA_RS00205	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DEIMA_RS00210	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DEIMA_RS00220	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DEIMA_RS00230	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DEIMA_RS00270	COG0667	Aldo Keto reductase
DEIMA_RS00285	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DEIMA_RS00290	COG3635	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
DEIMA_RS00295	COG1228	amidohydrolase
DEIMA_RS00310	COG0006	proline dipeptidase activity
DEIMA_RS00325	COG0601	transmembrane transport
DEIMA_RS00330	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEIMA_RS00335	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
DEIMA_RS00340	COG2339	peptidase activity
DEIMA_RS00345	COG0314	molybdopterin synthase activity
DEIMA_RS00365	COG3706	GGDEF domain
DEIMA_RS00380	COG0395	ABC-type sugar transport system, permease component
DEIMA_RS00385	COG1175	transmembrane transport
DEIMA_RS00400	COG2188	Transcriptional regulator
DEIMA_RS00405	COG2222	sugar isomerase
DEIMA_RS00410	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEIMA_RS00415	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEIMA_RS00420	COG1309	transcriptional regulator
DEIMA_RS00425	COG0667	Aldo Keto reductase
DEIMA_RS00430	COG0702	epimerase
DEIMA_RS00435	COG4251	negative regulation of phosphorylation
DEIMA_RS00440	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DEIMA_RS00445	COG0640	Transcriptional regulator
DEIMA_RS00455	COG0583	DNA-binding transcription factor activity
DEIMA_RS00460	COG3250	beta-galactosidase activity
DEIMA_RS00475	COG4628	conserved protein (DUF2132)
DEIMA_RS00480	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DEIMA_RS00490	COG0561	phosphatase activity
DEIMA_RS00510	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DEIMA_RS00550	COG3634	alkyl hydroperoxide reductase activity
DEIMA_RS00555	COG0596	Alpha beta hydrolase
DEIMA_RS00575	COG0564	pseudouridine synthase activity
DEIMA_RS00580	COG0523	cobalamin synthesis protein
DEIMA_RS00595	COG0028	Belongs to the TPP enzyme family
DEIMA_RS00610	COG2897	thiosulfate sulfurtransferase activity
DEIMA_RS00645	COG0318	PFAM AMP-dependent synthetase and ligase
DEIMA_RS00675	COG0784	Response regulator, receiver
DEIMA_RS00690	COG4251	negative regulation of phosphorylation
DEIMA_RS00700	COG1764	response to oxidative stress
DEIMA_RS00705	COG0583	DNA-binding transcription factor activity
DEIMA_RS00730	COG1388	LysM domain
DEIMA_RS00730	COG3942	CHAP domain
DEIMA_RS00735	COG3300	MHYT domain
DEIMA_RS00735	COG5001	Diguanylate cyclase
DEIMA_RS00745	COG3206	protein involved in exopolysaccharide biosynthesis
DEIMA_RS00745	COG0489	protein tyrosine kinase activity
DEIMA_RS00750	COG2244	polysaccharide biosynthetic process
DEIMA_RS00760	COG1215	transferase activity, transferring glycosyl groups
DEIMA_RS00770	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DEIMA_RS00775	COG5434	Belongs to the glycosyl hydrolase 28 family
DEIMA_RS00785	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DEIMA_RS00790	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
DEIMA_RS00800	COG0367	asparagine synthase
DEIMA_RS00835	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
DEIMA_RS00840	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DEIMA_RS00845	COG0579	oxidoreductase
DEIMA_RS00850	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DEIMA_RS00855	COG5001	Diguanylate cyclase
DEIMA_RS00855	COG1716	ATPase activity
DEIMA_RS00860	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DEIMA_RS00885	COG0673	inositol 2-dehydrogenase activity
DEIMA_RS00900	COG1940	carbohydrate kinase activity
DEIMA_RS00900	COG1846	Transcriptional regulator
DEIMA_RS00920	COG1169	isochorismate synthase
DEIMA_RS00925	COG1021	2,3-dihydroxybenzoate-AMP ligase
DEIMA_RS00930	COG3433	isochorismatase activity
DEIMA_RS00930	COG1535	isochorismatase
DEIMA_RS00935	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DEIMA_RS00940	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS00945	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DEIMA_RS00950	COG1937	Protein conserved in bacteria
DEIMA_RS00955	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEIMA_RS00955	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DEIMA_RS00960	COG0730	response to heat
DEIMA_RS00970	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DEIMA_RS00985	COG1116	anion transmembrane transporter activity
DEIMA_RS00990	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DEIMA_RS00995	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DEIMA_RS01015	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
DEIMA_RS01030	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
DEIMA_RS01040	COG2875	Belongs to the precorrin methyltransferase family
DEIMA_RS01080	COG0477	Major facilitator Superfamily
DEIMA_RS01085	COG2207	Transcriptional regulator
DEIMA_RS01085	COG1609	Transcriptional regulator
DEIMA_RS01110	COG2368	4-hydroxyphenylacetate
DEIMA_RS01115	COG0702	epimerase
DEIMA_RS01135	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DEIMA_RS01140	COG1132	(ABC) transporter
DEIMA_RS01160	COG5001	Diguanylate cyclase
DEIMA_RS01160	COG3300	MHYT domain
DEIMA_RS01165	COG0745	RESPONSE REGULATOR receiver
DEIMA_RS01170	COG2202	Pas domain
DEIMA_RS01170	COG2205	protein histidine kinase activity
DEIMA_RS01175	COG1609	Transcriptional regulator
DEIMA_RS01190	COG0601	transmembrane transport
DEIMA_RS01195	COG0444	Belongs to the ABC transporter superfamily
DEIMA_RS01200	COG4608	Belongs to the ABC transporter superfamily
DEIMA_RS01205	COG1472	Belongs to the glycosyl hydrolase 3 family
DEIMA_RS01215	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
DEIMA_RS01220	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEIMA_RS01245	COG1063	alcohol dehydrogenase
DEIMA_RS01255	COG2160	L-arabinose isomerase activity
DEIMA_RS01270	COG1879	ABC-type sugar transport system periplasmic component
DEIMA_RS01275	COG1129	ABC transporter
DEIMA_RS01280	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEIMA_RS01285	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEIMA_RS01295	COG1653	transport
DEIMA_RS01300	COG1175	transmembrane transport
DEIMA_RS01305	COG0395	ABC-type sugar transport system, permease component
DEIMA_RS01310	COG1609	Transcriptional regulator
DEIMA_RS01320	COG2217	Heavy metal translocating P-type atpase
DEIMA_RS01345	COG2814	Major facilitator Superfamily
DEIMA_RS01415	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DEIMA_RS01425	COG4251	negative regulation of phosphorylation
DEIMA_RS01445	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEIMA_RS01450	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
DEIMA_RS01455	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DEIMA_RS01460	COG1120	ATPase activity
DEIMA_RS01470	COG4251	negative regulation of phosphorylation
DEIMA_RS01490	COG1959	2 iron, 2 sulfur cluster binding
DEIMA_RS01495	COG0702	epimerase
DEIMA_RS01500	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DEIMA_RS01525	COG4558	Periplasmic binding protein
DEIMA_RS01530	COG2375	cellular response to nickel ion
DEIMA_RS01550	COG0784	Response regulator, receiver
DEIMA_RS01555	COG4251	negative regulation of phosphorylation
DEIMA_RS01560	COG0154	amidase activity
DEIMA_RS01580	COG2205	protein histidine kinase activity
DEIMA_RS01620	COG1846	Transcriptional regulator
DEIMA_RS01625	COG2259	Doxx family
DEIMA_RS01630	COG2514	catechol 2,3-dioxygenase activity
DEIMA_RS01645	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DEIMA_RS01670	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DEIMA_RS01690	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
DEIMA_RS01695	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DEIMA_RS01695	COG0574	Belongs to the PEP-utilizing enzyme family
DEIMA_RS01700	COG0673	inositol 2-dehydrogenase activity
DEIMA_RS01715	COG2814	Major facilitator Superfamily
DEIMA_RS01755	COG1511	domain protein
DEIMA_RS01755	COG1511	domain protein
DEIMA_RS01790	COG1215	transferase activity, transferring glycosyl groups
DEIMA_RS01850	COG2205	protein histidine kinase activity
DEIMA_RS01855	COG0745	RESPONSE REGULATOR receiver
DEIMA_RS01860	COG2353	YceI-like domain
DEIMA_RS01880	COG1794	racemase activity, acting on amino acids and derivatives
DEIMA_RS01885	COG2515	1-aminocyclopropane-1-carboxylate deaminase
DEIMA_RS01890	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DEIMA_RS01905	COG1250	3-hydroxyacyl-CoA dehydrogenase
DEIMA_RS01905	COG1024	Enoyl-CoA hydratase
DEIMA_RS01975	COG1192	Involved in chromosome partitioning
DEIMA_RS01980	COG3973	AAA domain
DEIMA_RS02015	COG0789	Transcriptional regulator
DEIMA_RS02025	COG0596	Alpha beta hydrolase
DEIMA_RS02040	COG1754	DNA topoisomerase type I activity
DEIMA_RS02040	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DEIMA_RS02045	COG0513	Belongs to the DEAD box helicase family
DEIMA_RS02055	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DEIMA_RS02115	COG1879	ABC-type sugar transport system periplasmic component
DEIMA_RS02120	COG1129	ABC transporter
DEIMA_RS02125	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEIMA_RS02130	COG1172	Belongs to the binding-protein-dependent transport system permease family
DEIMA_RS02150	COG2197	response regulator
DEIMA_RS02155	COG4585	Histidine kinase
DEIMA_RS02175	COG2814	Major facilitator Superfamily
DEIMA_RS02180	COG0318	PFAM AMP-dependent synthetase and ligase
DEIMA_RS02185	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS02210	COG2132	Multicopper oxidase
DEIMA_RS02215	COG2197	response regulator
DEIMA_RS02220	COG4585	Histidine kinase
DEIMA_RS02255	COG1234	tRNA 3'-trailer cleavage
DEIMA_RS02260	COG2873	o-acetylhomoserine
DEIMA_RS02265	COG0586	Pfam SNARE associated Golgi protein
DEIMA_RS02285	COG0395	ABC-type sugar transport system, permease component
DEIMA_RS02290	COG1175	transmembrane transport
DEIMA_RS02295	COG1653	transport
DEIMA_RS02300	COG3507	Belongs to the glycosyl hydrolase 43 family
DEIMA_RS02305	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
DEIMA_RS02315	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DEIMA_RS02320	COG1469	GTP cyclohydrolase I activity
DEIMA_RS02325	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DEIMA_RS02340	COG0572	uridine kinase
DEIMA_RS02360	COG2050	protein possibly involved in aromatic compounds catabolism
DEIMA_RS02400	COG0587	DNA-directed DNA polymerase activity
DEIMA_RS02415	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DEIMA_RS02420	COG2094	Belongs to the DNA glycosylase MPG family
DEIMA_RS02450	COG0205	6-phosphofructokinase activity
DEIMA_RS02455	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DEIMA_RS02520	COG0101	tRNA pseudouridine synthase activity
DEIMA_RS02525	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DEIMA_RS02530	COG0022	dehydrogenase e1 component
DEIMA_RS02550	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DEIMA_RS02555	COG1324	tolerance protein
DEIMA_RS02560	COG0531	amino acid
DEIMA_RS02580	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
DEIMA_RS02595	COG2986	histidine ammonia-lyase
DEIMA_RS02600	COG1228	amidohydrolase
DEIMA_RS02610	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
DEIMA_RS02625	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DEIMA_RS02630	COG3263	regulation of cellular component size
DEIMA_RS02640	COG0745	RESPONSE REGULATOR receiver
DEIMA_RS02650	COG0360	Binds together with S18 to 16S ribosomal RNA
DEIMA_RS02655	COG0629	single-stranded DNA binding
DEIMA_RS02660	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DEIMA_RS02665	COG0359	binds to the 23S rRNA
DEIMA_RS02690	COG0194	GDP metabolic process
DEIMA_RS02695	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
DEIMA_RS02700	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DEIMA_RS02710	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DEIMA_RS02720	COG0243	molybdopterin cofactor binding
DEIMA_RS02730	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DEIMA_RS02745	COG1263	PTS System
DEIMA_RS02745	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DEIMA_RS02745	COG2190	(PTS) system
DEIMA_RS02750	COG1737	Transcriptional regulator
DEIMA_RS02760	COG0642	Histidine kinase
DEIMA_RS02765	COG0083	homoserine kinase activity
DEIMA_RS02770	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DEIMA_RS02785	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DEIMA_RS02790	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DEIMA_RS02795	COG1854	S-ribosylhomocysteine lyase activity
DEIMA_RS02815	COG0343	queuine tRNA-ribosyltransferase activity
DEIMA_RS02820	COG3206	protein involved in exopolysaccharide biosynthesis
DEIMA_RS02825	COG1227	inorganic diphosphatase activity
DEIMA_RS02845	COG1396	sequence-specific DNA binding
DEIMA_RS02860	COG0315	cyclic pyranopterin monophosphate synthase activity
DEIMA_RS02875	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DEIMA_RS02890	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
DEIMA_RS02895	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DEIMA_RS02915	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DEIMA_RS02920	COG2304	oxidoreductase activity
DEIMA_RS02925	COG0557	exoribonuclease II activity
DEIMA_RS02950	COG4762	Protein conserved in bacteria
DEIMA_RS02955	COG1404	Belongs to the peptidase S8 family
DEIMA_RS02965	COG5002	protein histidine kinase activity
DEIMA_RS02990	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
DEIMA_RS03000	COG2814	Major facilitator Superfamily
DEIMA_RS03010	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DEIMA_RS03010	COG0438	transferase activity, transferring glycosyl groups
DEIMA_RS03020	COG0481	GTPase activity
DEIMA_RS03025	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEIMA_RS03035	COG3292	Two component regulator propeller
DEIMA_RS03035	COG2205	protein histidine kinase activity
DEIMA_RS03035	COG0745	RESPONSE REGULATOR receiver
DEIMA_RS03065	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DEIMA_RS03080	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
DEIMA_RS03100	COG3191	aminopeptidase activity
DEIMA_RS03105	COG1874	Beta-galactosidase
DEIMA_RS03105	COG0366	Alpha amylase catalytic
DEIMA_RS03110	COG2321	neutral zinc metallopeptidase
DEIMA_RS03145	COG0354	folic acid binding
DEIMA_RS03160	COG2860	membrane
DEIMA_RS03185	COG1803	Methylglyoxal synthase
DEIMA_RS03195	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
DEIMA_RS03205	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEIMA_RS03210	COG0477	Major facilitator Superfamily
DEIMA_RS03225	COG2897	thiosulfate sulfurtransferase activity
DEIMA_RS03300	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DEIMA_RS03305	COG0242	peptide deformylase activity
DEIMA_RS03315	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
DEIMA_RS03325	COG0802	atpase or kinase
DEIMA_RS03345	COG0156	8-amino-7-oxononanoate synthase activity
DEIMA_RS03390	COG0753	catalase activity
DEIMA_RS03395	COG1764	response to oxidative stress
DEIMA_RS03400	COG1846	Transcriptional regulator
DEIMA_RS03405	COG0658	competence protein
DEIMA_RS03405	COG2333	competence protein COMEC
DEIMA_RS03410	COG0492	ferredoxin-NADP+ reductase activity
DEIMA_RS03415	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
DEIMA_RS03420	COG0114	fumarate hydratase activity
DEIMA_RS03425	COG0726	polysaccharide deacetylase
DEIMA_RS03430	COG2390	Transcriptional regulator
DEIMA_RS03435	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DEIMA_RS03440	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DEIMA_RS03445	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DEIMA_RS03450	COG2309	aminopeptidase activity
DEIMA_RS03465	COG0714	Associated with various cellular activities
DEIMA_RS03480	COG2169	Transcriptional regulator
DEIMA_RS03480	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DEIMA_RS03500	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
DEIMA_RS03515	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DEIMA_RS03525	COG1643	Atp-dependent helicase
DEIMA_RS03535	COG1984	allophanate hydrolase subunit 2
DEIMA_RS03540	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
DEIMA_RS03560	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DEIMA_RS03560	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DEIMA_RS03580	COG1979	alcohol dehydrogenase
DEIMA_RS03645	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEIMA_RS03655	COG0725	ABC transporter, periplasmic molybdate-binding protein
DEIMA_RS03675	COG2720	vancomycin resistance protein
DEIMA_RS03690	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DEIMA_RS03700	COG3116	cell division
DEIMA_RS03700	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DEIMA_RS03750	COG0454	-acetyltransferase
DEIMA_RS03750	COG0456	acetyltransferase
DEIMA_RS03755	COG0456	acetyltransferase
DEIMA_RS03765	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
DEIMA_RS03790	COG0571	ribonuclease III activity
DEIMA_RS03795	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DEIMA_RS03800	COG0792	nuclease activity
DEIMA_RS03805	COG2847	Copper chaperone PCu(A)C
DEIMA_RS03820	COG0717	Belongs to the dCTP deaminase family
DEIMA_RS03830	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DEIMA_RS03835	COG2814	Major facilitator Superfamily
DEIMA_RS03850	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
DEIMA_RS03855	COG0825	malonyl-CoA metabolic process
DEIMA_RS03865	COG0778	Nitroreductase
DEIMA_RS03870	COG0667	Aldo Keto reductase
DEIMA_RS03885	COG4974	Belongs to the 'phage' integrase family
DEIMA_RS03930	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DEIMA_RS03960	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEIMA_RS03965	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DEIMA_RS03970	COG0321	lipoyl(octanoyl) transferase activity
DEIMA_RS03975	COG0335	large ribosomal subunit rRNA binding
DEIMA_RS03980	COG0584	glycerophosphoryl diester phosphodiesterase
DEIMA_RS03990	COG0039	L-malate dehydrogenase activity
DEIMA_RS04005	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
DEIMA_RS04010	COG1418	mRNA catabolic process
DEIMA_RS04015	COG0697	spore germination
DEIMA_RS04020	COG1116	anion transmembrane transporter activity
DEIMA_RS04030	COG1832	CoA-binding protein
DEIMA_RS04035	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
DEIMA_RS04060	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
DEIMA_RS04065	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
DEIMA_RS04090	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DEIMA_RS04110	COG0456	acetyltransferase
DEIMA_RS04120	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DEIMA_RS04130	COG0284	orotidine-5'-phosphate decarboxylase activity
DEIMA_RS04135	COG0534	Mate efflux family protein
DEIMA_RS04140	COG1307	EDD domain protein, DegV family
DEIMA_RS04155	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DEIMA_RS04160	COG0085	RNA polymerase activity
DEIMA_RS04165	COG0222	ribosome binding
DEIMA_RS04170	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DEIMA_RS04175	COG0081	regulation of translation
DEIMA_RS04180	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DEIMA_RS04185	COG0250	Participates in transcription elongation, termination and antitermination
DEIMA_RS04190	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DEIMA_RS04195	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DEIMA_RS04225	COG1132	(ABC) transporter
DEIMA_RS04230	COG1132	(ABC) transporter
DEIMA_RS04250	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DEIMA_RS04255	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DEIMA_RS04300	COG0305	Participates in initiation and elongation during chromosome replication
DEIMA_RS04360	COG0582	viral genome integration into host DNA
DEIMA_RS04375	COG0584	glycerophosphoryl diester phosphodiesterase
DEIMA_RS04385	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DEIMA_RS04395	COG1408	metallophosphoesterase
DEIMA_RS04410	COG0395	ABC-type sugar transport system, permease component
DEIMA_RS04415	COG1175	transmembrane transport
DEIMA_RS04425	COG1737	Transcriptional regulator
DEIMA_RS04440	COG1408	metallophosphoesterase
DEIMA_RS04445	COG1228	amidohydrolase
DEIMA_RS04450	COG2095	MarC family integral membrane protein
DEIMA_RS04460	COG1051	belongs to the nudix hydrolase family
DEIMA_RS04460	COG1056	cytidyltransferase-related domain
DEIMA_RS04500	COG3842	ATPase activity
DEIMA_RS04550	COG2205	protein histidine kinase activity
DEIMA_RS04555	COG0745	RESPONSE REGULATOR receiver
DEIMA_RS04575	COG1136	(ABC) transporter
DEIMA_RS04580	COG0577	efflux transmembrane transporter activity
DEIMA_RS04580	COG1136	(ABC) transporter
DEIMA_RS04595	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DEIMA_RS04620	COG2814	Major facilitator Superfamily
DEIMA_RS04635	COG3265	gluconokinase activity
DEIMA_RS04655	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS04665	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DEIMA_RS04675	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DEIMA_RS04690	COG1304	FMN binding
DEIMA_RS04710	COG2832	Protein of unknown function (DUF454)
DEIMA_RS04715	COG2315	Protein conserved in bacteria
DEIMA_RS04725	COG1185	polyribonucleotide nucleotidyltransferase activity
DEIMA_RS04735	COG3104	oligopeptide transport
DEIMA_RS04745	COG2856	Zn peptidase
DEIMA_RS04750	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DEIMA_RS04760	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DEIMA_RS04765	COG2815	serine threonine protein kinase
DEIMA_RS04765	COG0515	serine threonine protein kinase
DEIMA_RS04770	COG1104	cysteine desulfurase activity
DEIMA_RS04780	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DEIMA_RS04785	COG0137	argininosuccinate synthase activity
DEIMA_RS04800	COG0165	Argininosuccinate lyase
DEIMA_RS04815	COG0505	Belongs to the CarA family
DEIMA_RS04850	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DEIMA_RS04855	COG1678	Uncharacterized ACR, COG1678
DEIMA_RS04870	COG0358	DNA primase activity
DEIMA_RS04875	COG2255	four-way junction helicase activity
DEIMA_RS04880	COG1999	signal sequence binding
DEIMA_RS04885	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DEIMA_RS04885	COG1845	cytochrome c oxidase, subunit III
DEIMA_RS04895	COG0109	protoheme IX farnesyltransferase activity
DEIMA_RS04900	COG0109	protoheme IX farnesyltransferase activity
DEIMA_RS04900	COG1612	heme a metabolic process
DEIMA_RS04910	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
DEIMA_RS04930	COG2894	cell division
DEIMA_RS04935	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
DEIMA_RS04940	COG0772	Belongs to the SEDS family
DEIMA_RS04955	COG0714	Associated with various cellular activities
DEIMA_RS04960	COG0739	heme binding
DEIMA_RS04970	COG2197	response regulator
DEIMA_RS05015	COG0037	tRNA processing
DEIMA_RS05030	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEIMA_RS05040	COG0583	DNA-binding transcription factor activity
DEIMA_RS05045	COG0693	protein deglycase activity
DEIMA_RS05060	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DEIMA_RS05060	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DEIMA_RS05065	COG0509	glycine decarboxylation via glycine cleavage system
DEIMA_RS05070	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DEIMA_RS05085	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DEIMA_RS05090	COG0564	pseudouridine synthase activity
DEIMA_RS05095	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DEIMA_RS05100	COG0746	molybdenum cofactor guanylyltransferase activity
DEIMA_RS05105	COG1012	belongs to the aldehyde dehydrogenase family
DEIMA_RS05115	COG0742	ribosomal rna small subunit methyltransferase
DEIMA_RS05120	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DEIMA_RS05235	COG0501	Belongs to the peptidase M48B family
DEIMA_RS05240	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DEIMA_RS05245	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DEIMA_RS05250	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DEIMA_RS05275	COG1174	glycine betaine transport
DEIMA_RS05280	COG1125	glycine betaine transport
DEIMA_RS05280	COG0517	IMP dehydrogenase activity
DEIMA_RS05285	COG1174	glycine betaine transport
DEIMA_RS05290	COG1732	Glycine betaine
DEIMA_RS05295	COG0776	regulation of translation
DEIMA_RS05300	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
DEIMA_RS05310	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DEIMA_RS05325	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DEIMA_RS05330	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DEIMA_RS05335	COG0163	prenyltransferase activity
DEIMA_RS05340	COG2197	response regulator
DEIMA_RS05345	COG4585	Histidine kinase
DEIMA_RS05350	COG0842	Transport permease protein
DEIMA_RS05355	COG1131	(ABC) transporter
DEIMA_RS05370	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DEIMA_RS05380	COG0706	membrane insertase activity
DEIMA_RS05390	COG2890	protein-(glutamine-N5) methyltransferase activity
DEIMA_RS05400	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DEIMA_RS05405	COG0745	RESPONSE REGULATOR receiver
DEIMA_RS05410	COG0318	PFAM AMP-dependent synthetase and ligase
DEIMA_RS05415	COG0604	alcohol dehydrogenase
DEIMA_RS05415	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS05415	COG3321	synthase
DEIMA_RS05420	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
DEIMA_RS05430	COG0726	polysaccharide deacetylase
DEIMA_RS05450	COG0704	Plays a role in the regulation of phosphate uptake
DEIMA_RS05455	COG2205	protein histidine kinase activity
DEIMA_RS05465	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEIMA_RS05480	COG1774	PSP1 C-terminal conserved region
DEIMA_RS05485	COG0217	transcriptional regulatory protein
DEIMA_RS05505	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
DEIMA_RS05530	COG2197	response regulator
DEIMA_RS05540	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DEIMA_RS05565	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEIMA_RS05575	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DEIMA_RS05580	COG1012	belongs to the aldehyde dehydrogenase family
DEIMA_RS05615	COG1464	Belongs to the NlpA lipoprotein family
DEIMA_RS05625	COG2011	ABC-type metal ion transport system permease component
DEIMA_RS05630	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DEIMA_RS05645	COG1250	3-hydroxyacyl-CoA dehydrogenase
DEIMA_RS05650	COG0183	Belongs to the thiolase family
DEIMA_RS05665	COG4499	WXG100 protein secretion system (Wss), protein YukC
DEIMA_RS05665	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DEIMA_RS05675	COG0123	including yeast histone deacetylase and acetoin utilization protein
DEIMA_RS05680	COG2267	carboxylic ester hydrolase activity
DEIMA_RS05685	COG4585	Histidine kinase
DEIMA_RS05685	COG2203	Gaf domain
DEIMA_RS05695	COG2197	response regulator
DEIMA_RS05730	COG0667	Aldo Keto reductase
DEIMA_RS05740	COG0494	nUDIX hydrolase
DEIMA_RS05755	COG2094	Belongs to the DNA glycosylase MPG family
DEIMA_RS05765	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DEIMA_RS05775	COG1522	sequence-specific DNA binding
DEIMA_RS05780	COG0697	spore germination
DEIMA_RS05800	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
DEIMA_RS05830	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
DEIMA_RS05835	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DEIMA_RS05850	COG0785	Cytochrome C biogenesis protein
DEIMA_RS05875	COG0737	Belongs to the 5'-nucleotidase family
DEIMA_RS05885	COG0318	PFAM AMP-dependent synthetase and ligase
DEIMA_RS05915	COG2217	Heavy metal translocating P-type atpase
DEIMA_RS05920	COG0640	Transcriptional regulator
DEIMA_RS05930	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS05935	COG4221	oxidoreductase activity
DEIMA_RS05940	COG1459	type II secretion system
DEIMA_RS05950	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DEIMA_RS05960	COG0154	amidase activity
DEIMA_RS06000	COG1250	3-hydroxyacyl-CoA dehydrogenase
DEIMA_RS06015	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
DEIMA_RS06030	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DEIMA_RS06035	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DEIMA_RS06045	COG0805	protein transport
DEIMA_RS06050	COG1605	Chorismate mutase
DEIMA_RS06050	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
DEIMA_RS06060	COG1796	DNA polymerase
DEIMA_RS06060	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
DEIMA_RS06065	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
DEIMA_RS06075	COG0406	alpha-ribazole phosphatase activity
DEIMA_RS06080	COG1607	acyl-coa hydrolase
DEIMA_RS06100	COG1309	transcriptional regulator
DEIMA_RS06155	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DEIMA_RS06160	COG2107	Catalyzes the conversion of cyclic dehypoxanthine futalosine (cyclic DHFL) into 1,4-dihydroxy-6-naphthoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
DEIMA_RS06175	COG1960	acyl-CoA dehydrogenase activity
DEIMA_RS06180	COG2267	carboxylic ester hydrolase activity
DEIMA_RS06215	COG0657	acetylesterase activity
DEIMA_RS06220	COG0243	molybdopterin cofactor binding
DEIMA_RS06240	COG1960	acyl-CoA dehydrogenase activity
DEIMA_RS06250	COG0667	Aldo Keto reductase
DEIMA_RS06280	COG1166	arginine decarboxylase activity
DEIMA_RS06290	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DEIMA_RS06300	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEIMA_RS06305	COG0765	amino acid transport
DEIMA_RS06310	COG4585	Histidine kinase
DEIMA_RS06315	COG2197	response regulator
DEIMA_RS06320	COG0561	phosphatase activity
DEIMA_RS06325	COG0736	holo-[acyl-carrier-protein] synthase activity
DEIMA_RS06335	COG0655	NAD(P)H dehydrogenase (quinone) activity
DEIMA_RS06375	COG3437	response regulator, receiver
DEIMA_RS06385	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
DEIMA_RS06415	COG2224	Isocitrate lyase
DEIMA_RS06420	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DEIMA_RS06450	COG1597	lipid kinase activity
DEIMA_RS06460	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DEIMA_RS06475	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS06495	COG0517	IMP dehydrogenase activity
DEIMA_RS06495	COG0516	GMP reductase activity
DEIMA_RS06500	COG1272	protein, Hemolysin III
DEIMA_RS06505	COG1994	Peptidase M50
DEIMA_RS06510	COG1994	Peptidase M50
DEIMA_RS06515	COG0617	tRNA 3'-terminal CCA addition
DEIMA_RS06520	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DEIMA_RS06525	COG3426	butyrate kinase activity
DEIMA_RS06535	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DEIMA_RS06540	COG2197	response regulator
DEIMA_RS06575	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
DEIMA_RS06585	COG2815	serine threonine protein kinase
DEIMA_RS06585	COG0515	serine threonine protein kinase
DEIMA_RS06590	COG0113	porphobilinogen synthase activity
DEIMA_RS06600	COG2124	cytochrome p450
DEIMA_RS06605	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DEIMA_RS06610	COG1053	succinate dehydrogenase
DEIMA_RS06620	COG2009	succinate dehydrogenase
DEIMA_RS06630	COG0515	serine threonine protein kinase
DEIMA_RS06630	COG2815	serine threonine protein kinase
DEIMA_RS06645	COG0606	chelatase, subunit chli
DEIMA_RS06655	COG0586	Pfam SNARE associated Golgi protein
DEIMA_RS06660	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DEIMA_RS06665	COG0515	serine threonine protein kinase
DEIMA_RS06665	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DEIMA_RS06675	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DEIMA_RS06685	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DEIMA_RS06700	COG0564	pseudouridine synthase activity
DEIMA_RS06705	COG2201	protein-glutamate methylesterase activity
DEIMA_RS06715	COG1801	Protein of unknown function DUF72
DEIMA_RS06730	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
DEIMA_RS06740	COG3383	formate dehydrogenase (NAD+) activity
DEIMA_RS06745	COG4988	ABC transporter
DEIMA_RS06750	COG1132	(ABC) transporter
DEIMA_RS06755	COG1271	oxidase subunit
DEIMA_RS06760	COG1294	oxidase, subunit
DEIMA_RS06765	COG0517	IMP dehydrogenase activity
DEIMA_RS06770	COG0142	geranyltranstransferase activity
DEIMA_RS06785	COG0406	alpha-ribazole phosphatase activity
DEIMA_RS06790	COG1703	isobutyryl-CoA mutase activity
DEIMA_RS06805	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DEIMA_RS06805	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DEIMA_RS06815	COG0180	Tryptophanyl-tRNA synthetase
DEIMA_RS06825	COG0517	IMP dehydrogenase activity
DEIMA_RS06825	COG0516	GMP reductase activity
DEIMA_RS06840	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DEIMA_RS06850	COG0784	Response regulator, receiver
DEIMA_RS06855	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DEIMA_RS06860	COG0189	ligase activity
DEIMA_RS06875	COG0066	3-isopropylmalate dehydratase activity
DEIMA_RS06885	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DEIMA_RS06890	COG3135	benzoate transporter
DEIMA_RS06900	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DEIMA_RS06935	COG0506	proline dehydrogenase activity
DEIMA_RS06940	COG1012	belongs to the aldehyde dehydrogenase family
DEIMA_RS06950	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DEIMA_RS06950	COG0140	phosphoribosyl-ATP diphosphatase activity
DEIMA_RS06955	COG0107	imidazoleglycerol-phosphate synthase activity
DEIMA_RS06965	COG1346	cytolysis
DEIMA_RS06970	COG1380	Effector of murein hydrolase LrgA
DEIMA_RS06980	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DEIMA_RS06990	COG0671	phosphoesterase, PA-phosphatase related
DEIMA_RS07000	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DEIMA_RS07005	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DEIMA_RS07015	COG1085	galactose-1-phosphate uridylyltransferase
DEIMA_RS07020	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
DEIMA_RS07025	COG1674	ftsk spoiiie
DEIMA_RS07030	COG1310	metal-dependent protease of the Pad1 Jab1 superfamily
DEIMA_RS07035	COG0791	NLP P60 protein
DEIMA_RS07040	COG1404	Belongs to the peptidase S8 family
DEIMA_RS07050	COG0542	response to heat
DEIMA_RS07055	COG1285	pathogenesis
DEIMA_RS07065	COG1494	fructose-1,6-bisphosphatase
DEIMA_RS07070	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
DEIMA_RS07075	COG0033	Phosphoglucomutase
DEIMA_RS07105	COG0366	Alpha amylase catalytic
DEIMA_RS07125	COG3833	ABC-type maltose transport systems, permease component
DEIMA_RS07130	COG1175	transmembrane transport
DEIMA_RS07140	COG2814	Major facilitator Superfamily
DEIMA_RS07145	COG0667	Aldo Keto reductase
DEIMA_RS07150	COG2151	metal-sulfur cluster biosynthetic enzyme
DEIMA_RS07170	COG0596	Alpha beta hydrolase
DEIMA_RS07175	COG0826	peptidase U32
DEIMA_RS07195	COG4565	transcriptional regulatory protein
DEIMA_RS07200	COG3290	protein histidine kinase activity
DEIMA_RS07205	COG1301	dicarboxylic acid transport
DEIMA_RS07215	COG1131	(ABC) transporter
DEIMA_RS07225	COG2814	Major facilitator Superfamily
DEIMA_RS07270	COG0632	four-way junction helicase activity
DEIMA_RS07295	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DEIMA_RS07295	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DEIMA_RS07300	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DEIMA_RS07330	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DEIMA_RS07345	COG2197	response regulator
DEIMA_RS07360	COG0539	negative regulation of cytoplasmic translation
DEIMA_RS07390	COG4294	response to UV
DEIMA_RS07395	COG2816	NAD+ diphosphatase activity
DEIMA_RS07400	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DEIMA_RS07405	COG0460	homoserine dehydrogenase
DEIMA_RS07410	COG0142	geranyltranstransferase activity
DEIMA_RS07415	COG0215	cysteine-tRNA ligase activity
DEIMA_RS07430	COG0187	DNA topoisomerase II activity
DEIMA_RS07460	COG4326	sporulation control protein
DEIMA_RS07465	COG0402	S-adenosylhomocysteine deaminase activity
DEIMA_RS07475	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DEIMA_RS07485	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
DEIMA_RS07535	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DEIMA_RS07540	COG1331	Highly conserved protein containing a thioredoxin domain
DEIMA_RS07550	COG3188	usher protein
DEIMA_RS07565	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DEIMA_RS07575	COG0745	RESPONSE REGULATOR receiver
DEIMA_RS07580	COG0642	Histidine kinase
DEIMA_RS07605	COG0538	isocitrate dehydrogenase activity
DEIMA_RS07615	COG0477	Major facilitator Superfamily
DEIMA_RS07660	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DEIMA_RS07670	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DEIMA_RS07675	COG0440	acetolactate synthase activity
DEIMA_RS07680	COG0028	Belongs to the TPP enzyme family
DEIMA_RS07685	COG0473	3-isopropylmalate dehydrogenase activity
DEIMA_RS07690	COG0066	3-isopropylmalate dehydratase activity
DEIMA_RS07695	COG1280	lysine exporter protein (LysE YggA)
DEIMA_RS07700	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DEIMA_RS07710	COG4956	integral membrane protein (PIN domain superfamily)
DEIMA_RS07715	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DEIMA_RS07725	COG0542	response to heat
DEIMA_RS07740	COG3956	TIGRFAM MazG family protein
DEIMA_RS07750	COG0300	oxidoreductase activity
DEIMA_RS07760	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DEIMA_RS07775	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DEIMA_RS07780	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DEIMA_RS07785	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
DEIMA_RS07790	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DEIMA_RS07795	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DEIMA_RS07800	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DEIMA_RS07805	COG1450	Type ii and iii secretion system protein
DEIMA_RS07835	COG0473	3-isopropylmalate dehydrogenase activity
DEIMA_RS07840	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEIMA_RS07840	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
DEIMA_RS07845	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
DEIMA_RS07845	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEIMA_RS07850	COG0688	phosphatidylethanolamine metabolic process
DEIMA_RS07870	COG1846	Transcriptional regulator
DEIMA_RS07875	COG0616	signal peptide processing
DEIMA_RS07890	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DEIMA_RS07905	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DEIMA_RS07920	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
DEIMA_RS07925	COG3844	kynureninase activity
DEIMA_RS07970	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DEIMA_RS07980	COG0552	protein localization to endoplasmic reticulum
DEIMA_RS07990	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DEIMA_RS07995	COG1760	l-serine dehydratase
DEIMA_RS08000	COG1760	l-serine dehydratase
DEIMA_RS08005	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DEIMA_RS08020	COG1388	LysM domain
DEIMA_RS08020	COG0791	NLP P60 protein
DEIMA_RS08055	COG2197	response regulator
DEIMA_RS08065	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
DEIMA_RS08075	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
DEIMA_RS08090	COG0640	Transcriptional regulator
DEIMA_RS08100	COG2205	protein histidine kinase activity
DEIMA_RS08105	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DEIMA_RS08130	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DEIMA_RS08135	COG1609	Transcriptional regulator
DEIMA_RS08165	COG0420	3'-5' exonuclease activity
DEIMA_RS08170	COG0419	ATPase involved in DNA repair
DEIMA_RS08180	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DEIMA_RS08190	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DEIMA_RS08210	COG4555	ABC transporter
DEIMA_RS08215	COG1668	transmembrane transport
DEIMA_RS08235	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DEIMA_RS08245	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DEIMA_RS08260	COG1136	(ABC) transporter
DEIMA_RS08270	COG2364	Membrane
DEIMA_RS08275	COG2346	COG2346, Truncated hemoglobins
DEIMA_RS08295	COG0489	protein tyrosine kinase activity
DEIMA_RS08305	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DEIMA_RS08305	COG0519	Catalyzes the synthesis of GMP from XMP
DEIMA_RS08310	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
DEIMA_RS08315	COG0196	riboflavin kinase activity
DEIMA_RS08320	COG0494	nUDIX hydrolase
DEIMA_RS08325	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DEIMA_RS08335	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DEIMA_RS08340	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DEIMA_RS08345	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DEIMA_RS08350	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DEIMA_RS08355	COG0772	Belongs to the SEDS family
DEIMA_RS08360	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DEIMA_RS08365	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DEIMA_RS08385	COG2304	oxidoreductase activity
DEIMA_RS08425	COG1316	TRANSCRIPTIONal
DEIMA_RS08430	COG1193	negative regulation of DNA recombination
DEIMA_RS08450	COG0820	rRNA (adenine-C2-)-methyltransferase activity
DEIMA_RS08465	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
DEIMA_RS08470	COG3870	Protein conserved in bacteria
DEIMA_RS08475	COG1293	RNA-binding protein homologous to eukaryotic snRNP
DEIMA_RS08480	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
DEIMA_RS08490	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DEIMA_RS08500	COG2096	Adenosyltransferase
DEIMA_RS08525	COG1307	EDD domain protein, DegV family
DEIMA_RS08530	COG0483	inositol monophosphate 1-phosphatase activity
DEIMA_RS08535	COG0017	Asparaginyl-tRNA synthetase
DEIMA_RS08555	COG1131	(ABC) transporter
DEIMA_RS08615	COG1040	competence protein
DEIMA_RS08630	COG4221	oxidoreductase activity
DEIMA_RS08650	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DEIMA_RS08680	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DEIMA_RS08680	COG0189	ligase activity
DEIMA_RS08690	COG0590	tRNA wobble adenosine to inosine editing
DEIMA_RS08690	COG0037	tRNA processing
DEIMA_RS08695	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS08700	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DEIMA_RS08730	COG1653	transport
DEIMA_RS08750	COG0585	pseudouridine synthase activity
DEIMA_RS08770	COG3706	GGDEF domain
DEIMA_RS08775	COG1321	iron dependent repressor
DEIMA_RS08805	COG0477	Major facilitator Superfamily
DEIMA_RS08815	COG0346	lactoylglutathione lyase activity
DEIMA_RS08825	COG1098	S1 RNA binding domain
DEIMA_RS08830	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
DEIMA_RS08835	COG0134	indole-3-glycerol-phosphate synthase activity
DEIMA_RS08840	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DEIMA_RS08845	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
DEIMA_RS08850	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DEIMA_RS08860	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DEIMA_RS08870	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DEIMA_RS08880	COG0024	Methionine aminopeptidase
DEIMA_RS08890	COG0497	DNA recombination
DEIMA_RS08905	COG4948	Mandelate Racemase Muconate Lactonizing
DEIMA_RS08920	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DEIMA_RS08930	COG2720	vancomycin resistance protein
DEIMA_RS08935	COG1960	acyl-CoA dehydrogenase activity
DEIMA_RS08945	COG1136	(ABC) transporter
DEIMA_RS08950	COG3206	protein involved in exopolysaccharide biosynthesis
DEIMA_RS08955	COG0813	purine-nucleoside phosphorylase activity
DEIMA_RS08960	COG1024	Enoyl-CoA hydratase
DEIMA_RS08975	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DEIMA_RS08975	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DEIMA_RS08985	COG1217	gtp-binding protein TYPA
DEIMA_RS08995	COG3012	SEC-C Motif Domain Protein
DEIMA_RS09000	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DEIMA_RS09010	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
DEIMA_RS09025	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DEIMA_RS09040	COG2258	MOSC domain
DEIMA_RS09065	COG0495	leucyl-tRNA aminoacylation
DEIMA_RS09075	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
DEIMA_RS09090	COG2267	carboxylic ester hydrolase activity
DEIMA_RS09100	COG0670	Belongs to the BI1 family
DEIMA_RS09110	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DEIMA_RS09130	COG4106	trans-aconitate 2-methyltransferase activity
DEIMA_RS09135	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DEIMA_RS09140	COG0024	Methionine aminopeptidase
DEIMA_RS09145	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DEIMA_RS09150	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DEIMA_RS09155	COG0739	heme binding
DEIMA_RS09165	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DEIMA_RS09170	COG0006	proline dipeptidase activity
DEIMA_RS09175	COG0149	triose-phosphate isomerase activity
DEIMA_RS09180	COG0126	phosphoglycerate kinase activity
DEIMA_RS09205	COG1611	Belongs to the LOG family
DEIMA_RS09210	COG0384	phenazine biosynthesis protein PhzF
DEIMA_RS09215	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DEIMA_RS09220	COG0124	histidyl-tRNA synthetase
DEIMA_RS09230	COG1597	lipid kinase activity
DEIMA_RS09240	COG0776	regulation of translation
DEIMA_RS09245	COG4712	double-strand break repair protein
DEIMA_RS09250	COG1196	nuclear chromosome segregation
DEIMA_RS09265	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
DEIMA_RS09270	COG0017	Asparaginyl-tRNA synthetase
DEIMA_RS09280	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DEIMA_RS09290	COG0586	Pfam SNARE associated Golgi protein
DEIMA_RS09295	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DEIMA_RS09305	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DEIMA_RS09310	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEIMA_RS09315	COG3685	Protein conserved in bacteria
DEIMA_RS09320	COG0159	tryptophan synthase activity
DEIMA_RS09325	COG0133	tryptophan synthase activity
DEIMA_RS09330	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DEIMA_RS09335	COG4251	negative regulation of phosphorylation
DEIMA_RS09360	COG0791	NLP P60 protein
DEIMA_RS09380	COG0406	alpha-ribazole phosphatase activity
DEIMA_RS09410	COG0322	excinuclease ABC activity
DEIMA_RS09430	COG1164	Oligoendopeptidase f
DEIMA_RS09435	COG2267	carboxylic ester hydrolase activity
DEIMA_RS09445	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
DEIMA_RS09450	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
DEIMA_RS09475	COG1012	belongs to the aldehyde dehydrogenase family
DEIMA_RS09480	COG2368	4-hydroxyphenylacetate
DEIMA_RS09490	COG1012	belongs to the aldehyde dehydrogenase family
DEIMA_RS09495	COG3971	2-oxopent-4-enoate hydratase activity
DEIMA_RS09510	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DEIMA_RS09525	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DEIMA_RS09540	COG1609	Transcriptional regulator
DEIMA_RS09555	COG0395	ABC-type sugar transport system, permease component
DEIMA_RS09560	COG2723	6-phospho-beta-galactosidase activity
DEIMA_RS09585	COG0138	bifunctional purine biosynthesis protein purh
DEIMA_RS09590	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DEIMA_RS09595	COG1126	abc transporter atp-binding protein
DEIMA_RS09600	COG0765	amino acid transport
DEIMA_RS09605	COG0765	amino acid transport
DEIMA_RS09610	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEIMA_RS09615	COG0765	amino acid transport
DEIMA_RS09620	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DEIMA_RS09625	COG3842	ATPase activity
DEIMA_RS09630	COG0653	protein targeting
DEIMA_RS09635	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DEIMA_RS09655	COG1968	undecaprenyl-diphosphatase activity
DEIMA_RS09675	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DEIMA_RS09675	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DEIMA_RS09680	COG1349	DNA-binding transcription factor activity
DEIMA_RS09705	COG1959	2 iron, 2 sulfur cluster binding
DEIMA_RS09710	COG2124	cytochrome p450
DEIMA_RS09720	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DEIMA_RS09725	COG0529	Catalyzes the synthesis of activated sulfate
DEIMA_RS09730	COG0175	sulfate reduction
DEIMA_RS09735	COG2046	Belongs to the sulfate adenylyltransferase family
DEIMA_RS09750	COG3842	ATPase activity
DEIMA_RS09770	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
DEIMA_RS09775	COG0018	arginyl-trna synthetase
DEIMA_RS09785	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
DEIMA_RS09790	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DEIMA_RS09795	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DEIMA_RS09815	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DEIMA_RS09820	COG1744	ABC transporter substrate-binding protein PnrA-like
DEIMA_RS09840	COG3845	ABC transporter
DEIMA_RS09850	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DEIMA_RS09855	COG2359	stage V sporulation protein S
DEIMA_RS09860	COG0067	glutamate synthase
DEIMA_RS09860	COG0069	glutamate synthase activity
DEIMA_RS09860	COG0070	glutamate synthase
DEIMA_RS09880	COG0287	Prephenate dehydrogenase
DEIMA_RS09885	COG2267	carboxylic ester hydrolase activity
DEIMA_RS09890	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DEIMA_RS09910	COG4221	oxidoreductase activity
DEIMA_RS09925	COG2252	PERMEase
DEIMA_RS09950	COG1819	glycosyl
DEIMA_RS09970	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DEIMA_RS09980	COG1522	sequence-specific DNA binding
DEIMA_RS09990	COG1012	belongs to the aldehyde dehydrogenase family
DEIMA_RS10000	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DEIMA_RS10010	COG2045	Belongs to the ComB family
DEIMA_RS10015	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DEIMA_RS10020	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
DEIMA_RS10030	COG0247	lactate metabolic process
DEIMA_RS10030	COG2181	nitrate reductase activity
DEIMA_RS10035	COG1254	Belongs to the acylphosphatase family
DEIMA_RS10050	COG0488	(ABC) transporter
DEIMA_RS10055	COG0045	succinate-CoA ligase (ADP-forming) activity
DEIMA_RS10070	COG0438	transferase activity, transferring glycosyl groups
DEIMA_RS10085	COG1307	EDD domain protein, DegV family
DEIMA_RS10095	COG0268	Binds directly to 16S ribosomal RNA
DEIMA_RS10100	COG2137	regulation of response to DNA damage stimulus
DEIMA_RS10115	COG0077	Prephenate dehydratase
DEIMA_RS10115	COG1605	Chorismate mutase
DEIMA_RS10120	COG0154	amidase activity
DEIMA_RS10150	COG1959	2 iron, 2 sulfur cluster binding
DEIMA_RS10155	COG0167	dihydroorotate dehydrogenase activity
DEIMA_RS10165	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DEIMA_RS10170	COG0540	Belongs to the ATCase OTCase family
DEIMA_RS10175	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
DEIMA_RS10190	COG1192	Involved in chromosome partitioning
DEIMA_RS10210	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DEIMA_RS10215	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DEIMA_RS10220	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DEIMA_RS10225	COG0537	adenosine 5'-monophosphoramidase activity
DEIMA_RS10250	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DEIMA_RS10250	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DEIMA_RS10255	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DEIMA_RS10275	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEIMA_RS10280	COG0601	transmembrane transport
DEIMA_RS10285	COG0747	negative chemotaxis
DEIMA_RS10300	COG0151	Belongs to the GarS family
DEIMA_RS10305	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DEIMA_RS10325	COG0850	regulation of cytokinetic process
DEIMA_RS10330	COG0779	Required for maturation of 30S ribosomal subunits
DEIMA_RS10335	COG0195	Participates in both transcription termination and antitermination
DEIMA_RS10345	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DEIMA_RS10360	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DEIMA_RS10360	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DEIMA_RS10370	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DEIMA_RS10375	COG2124	cytochrome p450
DEIMA_RS10380	COG3250	beta-galactosidase activity
DEIMA_RS10390	COG0488	(ABC) transporter
DEIMA_RS10410	COG0339	signal peptide processing
DEIMA_RS10415	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DEIMA_RS10425	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
DEIMA_RS10430	COG1692	metallophosphoesterase
DEIMA_RS10435	COG0577	efflux transmembrane transporter activity
DEIMA_RS10435	COG1136	(ABC) transporter
DEIMA_RS10450	COG0768	penicillin binding
DEIMA_RS10460	COG0275	rRNA processing
DEIMA_RS10465	COG2001	Belongs to the MraZ family
DEIMA_RS10470	COG2363	Small membrane protein
DEIMA_RS10475	COG1187	pseudouridine synthase activity
DEIMA_RS10485	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DEIMA_RS10495	COG0686	Belongs to the AlaDH PNT family
DEIMA_RS10500	COG3226	Transcriptional regulator
DEIMA_RS10510	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
DEIMA_RS10520	COG1797	cobyrinic acid a,c-diamide synthase activity
DEIMA_RS10535	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
DEIMA_RS10545	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DEIMA_RS10555	COG0588	phosphoglycerate mutase activity
DEIMA_RS10560	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
DEIMA_RS10570	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DEIMA_RS10570	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DEIMA_RS10580	COG0617	tRNA 3'-terminal CCA addition
DEIMA_RS10620	COG0708	Exodeoxyribonuclease III
DEIMA_RS10625	COG0557	exoribonuclease II activity
DEIMA_RS10645	COG0439	Biotin carboxylase
DEIMA_RS10655	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DEIMA_RS10660	COG0280	phosphate acetyltransferase
DEIMA_RS10660	COG0857	belongs to the CobB CobQ family
DEIMA_RS10675	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
DEIMA_RS10680	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
DEIMA_RS10705	COG0423	glycine-tRNA ligase activity
DEIMA_RS10760	COG0789	Transcriptional regulator
DEIMA_RS10775	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DEIMA_RS10800	COG1309	transcriptional regulator
DEIMA_RS10810	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DEIMA_RS10825	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
DEIMA_RS10830	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DEIMA_RS10850	COG1252	NADH dehydrogenase
DEIMA_RS10860	COG0514	ATP-dependent DNA helicase (RecQ)
DEIMA_RS10865	COG1999	signal sequence binding
DEIMA_RS10905	COG2304	oxidoreductase activity
DEIMA_RS10920	COG1309	transcriptional regulator
DEIMA_RS10925	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DEIMA_RS10940	COG0521	Mo-molybdopterin cofactor biosynthetic process
DEIMA_RS10960	COG0525	valine-tRNA ligase activity
DEIMA_RS10980	COG1660	Displays ATPase and GTPase activities
DEIMA_RS10985	COG0391	Required for morphogenesis under gluconeogenic growth conditions
DEIMA_RS10995	COG1733	regulation of RNA biosynthetic process
DEIMA_RS11000	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
DEIMA_RS11020	COG1136	(ABC) transporter
DEIMA_RS11020	COG0577	efflux transmembrane transporter activity
DEIMA_RS11030	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DEIMA_RS11050	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DEIMA_RS11055	COG0512	Glutamine amidotransferase of anthranilate synthase
DEIMA_RS11060	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DEIMA_RS11075	COG1902	pentaerythritol trinitrate reductase activity
DEIMA_RS11085	COG1842	Phage shock protein A
DEIMA_RS11095	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DEIMA_RS11110	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DEIMA_RS11115	COG2022	thiamine diphosphate biosynthetic process
DEIMA_RS11125	COG0352	thiamine-phosphate diphosphorylase activity
DEIMA_RS11130	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
DEIMA_RS11135	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS11140	COG0351	phosphomethylpyrimidine kinase
DEIMA_RS11150	COG5006	permease, DMT superfamily
DEIMA_RS11165	COG0514	ATP-dependent DNA helicase (RecQ)
DEIMA_RS11180	COG0446	pyridine nucleotide-disulphide oxidoreductase
DEIMA_RS11185	COG4999	Histidine kinase
DEIMA_RS11185	COG3850	Histidine kinase
DEIMA_RS11185	COG2205	protein histidine kinase activity
DEIMA_RS11185	COG3437	response regulator, receiver
DEIMA_RS11185	COG3437	response regulator, receiver
DEIMA_RS11185	COG3850	Histidine kinase
DEIMA_RS11185	COG4999	Histidine kinase
DEIMA_RS11185	COG2205	protein histidine kinase activity
DEIMA_RS11190	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DEIMA_RS11195	COG4251	negative regulation of phosphorylation
DEIMA_RS11200	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DEIMA_RS11215	COG4251	negative regulation of phosphorylation
DEIMA_RS11220	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DEIMA_RS11225	COG0739	heme binding
DEIMA_RS11230	COG1490	D-aminoacyl-tRNA deacylase activity
DEIMA_RS11240	COG1573	uracil-dna glycosylase
DEIMA_RS11250	COG0791	NLP P60 protein
DEIMA_RS11250	COG1388	LysM domain
DEIMA_RS11285	COG0860	N-Acetylmuramoyl-L-alanine amidase
DEIMA_RS11295	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DEIMA_RS11310	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
DEIMA_RS11320	COG1733	regulation of RNA biosynthetic process
DEIMA_RS11365	COG0719	Fe-S assembly protein
DEIMA_RS11370	COG0719	Fe-S assembly protein
DEIMA_RS11380	COG0396	ATPase activity
DEIMA_RS11385	COG0811	peptide transport
DEIMA_RS11390	COG0848	biopolymer transport protein
DEIMA_RS11405	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
DEIMA_RS11410	COG0484	heat shock protein binding
DEIMA_RS11425	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DEIMA_RS11440	COG1874	Beta-galactosidase
DEIMA_RS11440	COG0366	Alpha amylase catalytic
DEIMA_RS11445	COG1392	Phosphate transport regulator
DEIMA_RS11450	COG0306	phosphate transporter
DEIMA_RS11460	COG1063	alcohol dehydrogenase
DEIMA_RS11470	COG0672	)-iron permease
DEIMA_RS11485	COG0737	Belongs to the 5'-nucleotidase family
DEIMA_RS11505	COG2318	DinB family
DEIMA_RS11520	COG3706	GGDEF domain
DEIMA_RS11525	COG0183	Belongs to the thiolase family
DEIMA_RS11530	COG1024	Enoyl-CoA hydratase
DEIMA_RS11530	COG1250	3-hydroxyacyl-CoA dehydrogenase
DEIMA_RS11545	COG0730	response to heat
DEIMA_RS11555	COG0179	Fumarylacetoacetate (FAA) hydrolase
DEIMA_RS11590	COG0372	Belongs to the citrate synthase family
DEIMA_RS11600	COG0556	nucleotide-excision repair
DEIMA_RS11605	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEIMA_RS11610	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DEIMA_RS11615	COG0573	inorganic phosphate transmembrane transporter activity
DEIMA_RS11620	COG0581	inorganic phosphate transmembrane transporter activity
DEIMA_RS11625	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DEIMA_RS11630	COG0704	Plays a role in the regulation of phosphate uptake
DEIMA_RS11645	COG0131	Imidazoleglycerol-phosphate dehydratase
DEIMA_RS11650	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DEIMA_RS11655	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DEIMA_RS11675	COG2813	Specifically methylates the guanine in position
DEIMA_RS11690	COG0714	Associated with various cellular activities
DEIMA_RS11705	COG1764	response to oxidative stress
DEIMA_RS11720	COG0259	pyridoxamine-phosphate oxidase activity
DEIMA_RS11725	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
DEIMA_RS11735	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
DEIMA_RS11740	COG0232	Belongs to the dGTPase family. Type 2 subfamily
DEIMA_RS11755	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS11775	COG2205	protein histidine kinase activity
DEIMA_RS11785	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DEIMA_RS11790	COG1702	phosphate starvation-inducible protein PhoH
DEIMA_RS11800	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DEIMA_RS11805	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
DEIMA_RS11810	COG1253	flavin adenine dinucleotide binding
DEIMA_RS11815	COG0295	cytidine deaminase activity
DEIMA_RS11840	COG2354	Protein conserved in bacteria
DEIMA_RS11845	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DEIMA_RS11860	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DEIMA_RS11865	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DEIMA_RS11870	COG2045	Belongs to the ComB family
DEIMA_RS11880	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
DEIMA_RS11885	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DEIMA_RS11890	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DEIMA_RS11905	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DEIMA_RS11910	COG0424	maF-like protein
DEIMA_RS11915	COG1792	Involved in formation and maintenance of cell shape
DEIMA_RS11925	COG0768	penicillin binding
DEIMA_RS11935	COG0328	RNA-DNA hybrid ribonuclease activity
DEIMA_RS11945	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
DEIMA_RS11950	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DEIMA_RS11960	COG0363	glucosamine-6-phosphate deaminase activity
DEIMA_RS11965	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DEIMA_RS11980	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DEIMA_RS11985	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DEIMA_RS11995	COG1378	Sugar-specific transcriptional regulator TrmB
DEIMA_RS12000	COG0793	Belongs to the peptidase S41A family
DEIMA_RS12005	COG2884	Cell division ATP-binding protein ftsE
DEIMA_RS12010	COG2177	Part of the ABC transporter FtsEX involved in
DEIMA_RS12020	COG0228	four-way junction DNA binding
DEIMA_RS12025	COG1837	Belongs to the UPF0109 family
DEIMA_RS12030	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DEIMA_RS12035	COG0336	Belongs to the RNA methyltransferase TrmD family
DEIMA_RS12040	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DEIMA_RS12045	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DEIMA_RS12050	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DEIMA_RS12065	COG0492	ferredoxin-NADP+ reductase activity
DEIMA_RS12080	COG0174	glutamine synthetase
DEIMA_RS12110	COG0747	negative chemotaxis
DEIMA_RS12115	COG0601	transmembrane transport
DEIMA_RS12120	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DEIMA_RS12125	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DEIMA_RS12130	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
DEIMA_RS12135	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DEIMA_RS12170	COG0454	-acetyltransferase
DEIMA_RS12175	COG0604	alcohol dehydrogenase
DEIMA_RS12180	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DEIMA_RS12195	COG3706	GGDEF domain
DEIMA_RS12200	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
DEIMA_RS12210	COG0754	glutathionylspermidine amidase activity
DEIMA_RS12230	COG2165	general secretion pathway protein
DEIMA_RS12235	COG2165	general secretion pathway protein
DEIMA_RS12275	COG0166	Belongs to the GPI family
DEIMA_RS12315	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DEIMA_RS12325	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DEIMA_RS12335	COG1393	Belongs to the ArsC family
DEIMA_RS12345	COG0395	ABC-type sugar transport system, permease component
DEIMA_RS12350	COG1175	transmembrane transport
DEIMA_RS12365	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DEIMA_RS12375	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
DEIMA_RS12390	COG1381	Involved in DNA repair and RecF pathway recombination
DEIMA_RS12400	COG2032	superoxide dismutase activity
DEIMA_RS12430	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DEIMA_RS12445	COG0702	epimerase
DEIMA_RS12460	COG1562	ergosterol biosynthetic process
DEIMA_RS12490	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DEIMA_RS12500	COG1121	(ABC) transporter
DEIMA_RS12505	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DEIMA_RS12515	COG0778	Nitroreductase
DEIMA_RS12520	COG1733	regulation of RNA biosynthetic process
DEIMA_RS12525	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DEIMA_RS12540	COG1435	thymidine kinase activity
DEIMA_RS12545	COG0254	rRNA binding
DEIMA_RS12565	COG0784	Response regulator, receiver
DEIMA_RS12570	COG4251	negative regulation of phosphorylation
DEIMA_RS12580	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DEIMA_RS12585	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DEIMA_RS12605	COG2124	cytochrome p450
DEIMA_RS12615	COG2211	Major facilitator Superfamily
DEIMA_RS12640	COG3263	regulation of cellular component size
DEIMA_RS12650	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DEIMA_RS12660	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DEIMA_RS12665	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DEIMA_RS12680	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEIMA_RS12710	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DEIMA_RS12715	COG0443	Heat shock 70 kDa protein
DEIMA_RS12720	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DEIMA_RS12725	COG0484	heat shock protein binding
DEIMA_RS12755	COG0596	Alpha beta hydrolase
DEIMA_RS12765	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DEIMA_RS12780	COG2909	trisaccharide binding
DEIMA_RS12785	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS12795	COG1960	acyl-CoA dehydrogenase activity
DEIMA_RS12805	COG0737	Belongs to the 5'-nucleotidase family
DEIMA_RS12805	COG1525	nuclease
DEIMA_RS12805	COG4085	toxin activity
DEIMA_RS12810	COG1960	acyl-CoA dehydrogenase activity
DEIMA_RS12815	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DEIMA_RS12840	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS12850	COG0667	Aldo Keto reductase
DEIMA_RS12855	COG0789	Transcriptional regulator
DEIMA_RS12860	COG1914	H( )-stimulated, divalent metal cation uptake system
DEIMA_RS12875	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DEIMA_RS12905	COG0297	glycogen (starch) synthase activity
DEIMA_RS12925	COG4585	Histidine kinase
DEIMA_RS12935	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DEIMA_RS12945	COG1363	Peptidase, m42
DEIMA_RS12950	COG2967	ApaG domain
DEIMA_RS12955	COG1427	Catalyzes the dehydration of chorismate into 3- (1- carboxyvinyl)oxy benzoate, a step in the biosynthesis of menaquinone (MK, vitamin K2)
DEIMA_RS12960	COG1060	Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3- (1- carboxyvinyl)oxy benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate
DEIMA_RS12980	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DEIMA_RS12995	COG1131	(ABC) transporter
DEIMA_RS13000	COG0667	Aldo Keto reductase
DEIMA_RS13015	COG3273	potassium ion transport
DEIMA_RS13015	COG0471	metal ion transport
DEIMA_RS13020	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DEIMA_RS13065	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DEIMA_RS13075	COG0123	including yeast histone deacetylase and acetoin utilization protein
DEIMA_RS13085	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DEIMA_RS13095	COG1950	PFAM Membrane protein of
DEIMA_RS13100	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
DEIMA_RS13110	COG2326	polyphosphate kinase activity
DEIMA_RS13115	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DEIMA_RS13150	COG1132	(ABC) transporter
DEIMA_RS13160	COG0277	FAD linked oxidase domain protein
DEIMA_RS13180	COG2823	Periplasmic or secreted lipoprotein
DEIMA_RS13180	COG1652	LysM domain
DEIMA_RS13190	COG1506	peptidase
DEIMA_RS13190	COG0823	Involved in the tonB-independent uptake of proteins
DEIMA_RS13190	COG4946	Tricorn protease homolog
DEIMA_RS13200	COG0784	Response regulator, receiver
DEIMA_RS13205	COG2205	protein histidine kinase activity
DEIMA_RS13210	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DEIMA_RS13220	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DEIMA_RS13235	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DEIMA_RS13240	COG2264	protein methyltransferase activity
DEIMA_RS13255	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DEIMA_RS13275	COG0750	zinc metalloprotease
DEIMA_RS13280	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DEIMA_RS13285	COG0575	Belongs to the CDS family
DEIMA_RS13290	COG0233	cytoplasmic translational termination
DEIMA_RS13295	COG0528	UMP kinase activity
DEIMA_RS13300	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DEIMA_RS13305	COG0052	Belongs to the universal ribosomal protein uS2 family
DEIMA_RS13315	COG0237	dephospho-CoA kinase activity
DEIMA_RS13320	COG0180	Tryptophanyl-tRNA synthetase
DEIMA_RS13325	COG0504	CTP synthase activity
DEIMA_RS13340	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DEIMA_RS13345	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DEIMA_RS13350	COG0482	sulfurtransferase activity
DEIMA_RS13355	COG0019	diaminopimelate decarboxylase activity
DEIMA_RS13360	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DEIMA_RS13365	COG0590	tRNA wobble adenosine to inosine editing
DEIMA_RS13380	COG0488	(ABC) transporter
DEIMA_RS13415	COG1505	serine-type exopeptidase activity
DEIMA_RS13430	COG3663	DNA glycosylase
DEIMA_RS13445	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DEIMA_RS13450	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DEIMA_RS13455	COG0442	prolyl-tRNA aminoacylation
DEIMA_RS13460	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DEIMA_RS13470	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DEIMA_RS13480	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DEIMA_RS13485	COG2267	carboxylic ester hydrolase activity
DEIMA_RS13500	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
DEIMA_RS13535	COG0459	protein refolding
DEIMA_RS13540	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DEIMA_RS13545	COG3706	GGDEF domain
DEIMA_RS13575	COG0728	peptidoglycan biosynthetic process
DEIMA_RS13600	COG0326	Molecular chaperone. Has ATPase activity
DEIMA_RS13625	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DEIMA_RS13625	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DEIMA_RS13640	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DEIMA_RS13645	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEIMA_RS13650	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DEIMA_RS13660	COG0442	prolyl-tRNA aminoacylation
DEIMA_RS13690	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
DEIMA_RS13690	COG1672	PFAM Archaeal ATPase
DEIMA_RS13725	COG3695	enzyme binding
DEIMA_RS13730	COG0747	negative chemotaxis
DEIMA_RS13735	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DEIMA_RS13740	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DEIMA_RS13740	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DEIMA_RS13745	COG0307	riboflavin synthase, alpha
DEIMA_RS13750	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DEIMA_RS13750	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DEIMA_RS13790	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DEIMA_RS13795	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DEIMA_RS13800	COG1609	Transcriptional regulator
DEIMA_RS13820	COG2409	Drug exporters of the RND superfamily
DEIMA_RS13830	COG1394	ATPase activity, coupled to movement of substances
DEIMA_RS13835	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
DEIMA_RS13840	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
DEIMA_RS13845	COG1436	Produces ATP from ADP in the presence of a proton gradient across the membrane
DEIMA_RS13850	COG1527	subunit (C
DEIMA_RS13855	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
DEIMA_RS13865	COG1269	ATP hydrolysis coupled proton transport
DEIMA_RS13875	COG0004	ammonium transporteR
DEIMA_RS13890	COG0193	aminoacyl-tRNA hydrolase activity
DEIMA_RS13915	COG0681	Belongs to the peptidase S26 family
DEIMA_RS13930	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DEIMA_RS13935	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DEIMA_RS13940	COG0047	phosphoribosylformylglycinamidine synthase activity
DEIMA_RS13950	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DEIMA_RS13955	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DEIMA_RS13970	COG4895	conserved protein (DUF2196)
DEIMA_RS13985	COG1482	cell wall glycoprotein biosynthetic process
DEIMA_RS13990	COG1628	Protein of unknown function DUF99
DEIMA_RS13995	COG0567	Dehydrogenase, E1 component
DEIMA_RS14005	COG5504	Zn-dependent protease
DEIMA_RS14010	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DEIMA_RS14015	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DEIMA_RS14035	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DEIMA_RS14040	COG2188	Transcriptional regulator
DEIMA_RS14060	COG0569	domain protein
DEIMA_RS14065	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DEIMA_RS14070	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DEIMA_RS14070	COG0116	Belongs to the methyltransferase superfamily
DEIMA_RS14075	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DEIMA_RS14080	COG1595	DNA-templated transcription, initiation
DEIMA_RS14095	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DEIMA_RS14100	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DEIMA_RS14105	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DEIMA_RS14125	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DEIMA_RS14135	COG1024	Enoyl-CoA hydratase
DEIMA_RS14155	COG1428	Deoxynucleoside kinase
DEIMA_RS14160	COG1428	Deoxynucleoside kinase
DEIMA_RS14175	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DEIMA_RS14190	COG0366	Alpha amylase catalytic
DEIMA_RS14195	COG2197	response regulator
DEIMA_RS14215	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
DEIMA_RS14225	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
DEIMA_RS14270	COG1546	Belongs to the CinA family
DEIMA_RS14270	COG1058	Belongs to the CinA family
DEIMA_RS14275	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
DEIMA_RS14280	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DEIMA_RS14285	COG1418	mRNA catabolic process
DEIMA_RS14295	COG0793	Belongs to the peptidase S41A family
DEIMA_RS14305	COG0601	transmembrane transport
DEIMA_RS14315	COG1181	Belongs to the D-alanine--D-alanine ligase family
DEIMA_RS14325	COG2226	methyltransferase
DEIMA_RS14335	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
DEIMA_RS14340	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DEIMA_RS14355	COG2313	pseudouridylate synthase activity
DEIMA_RS14360	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEIMA_RS14375	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DEIMA_RS14380	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DEIMA_RS14385	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DEIMA_RS14425	COG0745	RESPONSE REGULATOR receiver
DEIMA_RS14430	COG2205	protein histidine kinase activity
DEIMA_RS14435	COG2226	methyltransferase
DEIMA_RS14445	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DEIMA_RS14455	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DEIMA_RS14460	COG1077	Cell shape determining protein MreB Mrl
DEIMA_RS14480	COG2814	Major facilitator Superfamily
DEIMA_RS14500	COG1755	Isoprenylcysteine carboxyl methyltransferase
DEIMA_RS14505	COG3424	synthase
DEIMA_RS14515	COG0012	GTP binding
DEIMA_RS14555	COG2318	DinB family
DEIMA_RS14560	COG1694	Mazg nucleotide pyrophosphohydrolase
DEIMA_RS14570	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DEIMA_RS14575	COG0668	transmembrane transport
DEIMA_RS14580	COG0416	fatty acid biosynthetic process
DEIMA_RS14595	COG3118	belongs to the thioredoxin family
DEIMA_RS14605	COG0203	ribosomal protein L17
DEIMA_RS14610	COG0202	RNA polymerase activity
DEIMA_RS14615	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DEIMA_RS14620	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DEIMA_RS14625	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DEIMA_RS14630	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DEIMA_RS14635	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DEIMA_RS14640	COG0563	adenylate kinase activity
DEIMA_RS14645	COG0201	protein transport
DEIMA_RS14650	COG0200	Binds to the 23S rRNA
DEIMA_RS14655	COG1841	ribosomal large subunit assembly
DEIMA_RS14660	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DEIMA_RS14665	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DEIMA_RS14670	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DEIMA_RS14675	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DEIMA_RS14680	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DEIMA_RS14685	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DEIMA_RS14690	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DEIMA_RS14695	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DEIMA_RS14700	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DEIMA_RS14705	COG0255	Belongs to the universal ribosomal protein uL29 family
DEIMA_RS14710	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DEIMA_RS14715	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DEIMA_RS14720	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DEIMA_RS14725	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DEIMA_RS14730	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DEIMA_RS14735	COG0089	rRNA binding
DEIMA_RS14740	COG0088	Forms part of the polypeptide exit tunnel
DEIMA_RS14745	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DEIMA_RS14750	COG0051	transcription antitermination factor activity, RNA binding
DEIMA_RS14765	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DEIMA_RS14770	COG0049	tRNA binding
DEIMA_RS14775	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DEIMA_RS14795	COG0438	transferase activity, transferring glycosyl groups
DEIMA_RS14800	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
DEIMA_RS14805	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DEIMA_RS14850	COG1695	Transcriptional regulator
DEIMA_RS14860	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
DEIMA_RS14880	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DEIMA_RS14890	COG1086	Polysaccharide biosynthesis protein
DEIMA_RS14905	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DEIMA_RS14945	COG1940	carbohydrate kinase activity
DEIMA_RS14980	COG1100	Small GTP-binding protein
DEIMA_RS14985	COG0612	Peptidase, M16
DEIMA_RS14990	COG0612	Peptidase, M16
DEIMA_RS15010	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
DEIMA_RS15020	COG2318	DinB family
DEIMA_RS15025	COG3568	Endonuclease Exonuclease Phosphatase
DEIMA_RS15030	COG1970	mechanosensitive ion channel activity
DEIMA_RS15035	COG0750	zinc metalloprotease
DEIMA_RS15040	COG1213	nucleotidyl transferase
DEIMA_RS15040	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DEIMA_RS15050	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS15070	COG1205	dead DEAH box helicase
DEIMA_RS15070	COG1111	helicase
DEIMA_RS15075	COG0305	Participates in initiation and elongation during chromosome replication
DEIMA_RS15100	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DEIMA_RS15135	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DEIMA_RS15150	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
DEIMA_RS15160	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DEIMA_RS15165	COG1222	aaa ATPase
DEIMA_RS15235	COG2815	serine threonine protein kinase
DEIMA_RS15235	COG0515	serine threonine protein kinase
DEIMA_RS15250	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DEIMA_RS15255	COG0477	Major facilitator Superfamily
DEIMA_RS15260	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DEIMA_RS15265	COG0783	Belongs to the Dps family
DEIMA_RS15295	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DEIMA_RS15315	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
DEIMA_RS15325	COG2311	Membrane
DEIMA_RS15340	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DEIMA_RS15350	COG3253	May function as heme-dependent peroxidase
DEIMA_RS15355	COG0667	Aldo Keto reductase
DEIMA_RS15380	COG0628	permease
DEIMA_RS15390	COG1079	Belongs to the binding-protein-dependent transport system permease family
DEIMA_RS15395	COG4603	Belongs to the binding-protein-dependent transport system permease family
DEIMA_RS15400	COG0105	UTP biosynthetic process
DEIMA_RS15405	COG1960	acyl-CoA dehydrogenase activity
DEIMA_RS15420	COG0436	Aminotransferase
DEIMA_RS15430	COG0039	L-malate dehydrogenase activity
DEIMA_RS15450	COG0084	hydrolase, TatD family'
DEIMA_RS15465	COG0494	nUDIX hydrolase
DEIMA_RS15470	COG0860	N-Acetylmuramoyl-L-alanine amidase
DEIMA_RS15485	COG0758	DNA mediated transformation
DEIMA_RS15485	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DEIMA_RS15505	COG1028	Short-chain dehydrogenase reductase Sdr
DEIMA_RS15525	COG2385	sporulation resulting in formation of a cellular spore
DEIMA_RS15535	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DEIMA_RS15545	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
DEIMA_RS15555	COG1438	arginine binding
DEIMA_RS15565	COG1758	RNA polymerase activity
DEIMA_RS15585	COG0598	Magnesium transport protein CorA
DEIMA_RS15590	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DEIMA_RS15595	COG1570	exodeoxyribonuclease VII activity
DEIMA_RS15600	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DEIMA_RS15605	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
DEIMA_RS15620	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DEIMA_RS15625	COG0211	Belongs to the bacterial ribosomal protein bL27 family
DEIMA_RS15630	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DEIMA_RS15635	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DEIMA_RS15635	COG1713	HD superfamily hydrolase involved in NAD metabolism
DEIMA_RS15645	COG0799	negative regulation of ribosome biogenesis
DEIMA_RS15665	COG1070	Carbohydrate kinase
DEIMA_RS15670	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DEIMA_RS15675	COG0277	FAD linked oxidase domain protein
DEIMA_RS15710	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
DEIMA_RS15715	COG0720	synthase
DEIMA_RS15720	COG0602	queuosine metabolic process
DEIMA_RS15725	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
DEIMA_RS15770	COG4251	negative regulation of phosphorylation
DEIMA_RS15775	COG0784	Response regulator, receiver
DEIMA_RS15780	COG1358	cellular component organization or biogenesis
DEIMA_RS15835	COG1061	Type III restriction enzyme res subunit
DEIMA_RS15840	COG3546	catalase activity
DEIMA_RS15845	COG3447	MASE1 domain protein
DEIMA_RS15845	COG5001	Diguanylate cyclase
DEIMA_RS15845	COG5002	protein histidine kinase activity
DEIMA_RS15880	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DEIMA_RS15890	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DEIMA_RS15895	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DEIMA_RS15900	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
DEIMA_RS15910	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DEIMA_RS15925	COG3153	acetyltransferase
DEIMA_RS15925	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DEIMA_RS15960	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
DEIMA_RS15970	COG1404	Belongs to the peptidase S8 family
DEIMA_RS15975	COG1404	Belongs to the peptidase S8 family
DEIMA_RS15990	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
DEIMA_RS15995	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DEIMA_RS16000	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DEIMA_RS16005	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DEIMA_RS16010	COG1024	Enoyl-CoA hydratase
DEIMA_RS16015	COG3300	MHYT domain
DEIMA_RS16015	COG5001	Diguanylate cyclase
DEIMA_RS16020	COG0248	Ppx GppA phosphatase
DEIMA_RS16030	COG4948	Mandelate Racemase Muconate Lactonizing
DEIMA_RS16070	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DEIMA_RS16075	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DEIMA_RS16090	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DEIMA_RS16095	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DEIMA_RS16115	COG0544	peptidyl-prolyl cis-trans isomerase activity
DEIMA_RS16140	COG1160	GTP binding
DEIMA_RS16155	COG1047	Peptidyl-prolyl cis-trans
DEIMA_RS16185	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
DEIMA_RS16215	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
DEIMA_RS16235	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DEIMA_RS16235	COG1648	precorrin-2 dehydrogenase activity
DEIMA_RS16240	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
DEIMA_RS16250	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DEIMA_RS16265	COG0318	PFAM AMP-dependent synthetase and ligase
DEIMA_RS16270	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DEIMA_RS16285	COG0642	Histidine kinase
DEIMA_RS16290	COG0745	RESPONSE REGULATOR receiver
DEIMA_RS16340	COG0318	PFAM AMP-dependent synthetase and ligase
DEIMA_RS16340	COG0204	Acyl-transferase
DEIMA_RS16370	COG1233	COG1233 Phytoene dehydrogenase and related
DEIMA_RS16380	COG0303	'Molybdopterin
DEIMA_RS16385	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DEIMA_RS16400	COG3541	Predicted nucleotidyltransferase
DEIMA_RS16420	COG0181	hydroxymethylbilane synthase activity
DEIMA_RS16450	COG1522	sequence-specific DNA binding
DEIMA_RS16455	COG0251	oxidation-reduction process
DEIMA_RS16460	COG0631	protein serine/threonine phosphatase activity
DEIMA_RS16475	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DEIMA_RS16480	COG0072	phenylalanine-tRNA ligase activity
DEIMA_RS16480	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DEIMA_RS16510	COG0784	Response regulator, receiver
DEIMA_RS16520	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
DEIMA_RS16525	COG2720	vancomycin resistance protein
DEIMA_RS16530	COG1475	DNA binding
DEIMA_RS16535	COG1192	Involved in chromosome partitioning
DEIMA_RS16540	COG0357	Ribosomal RNA small subunit methyltransferase G
DEIMA_RS16545	COG0445	tRNA wobble uridine modification
DEIMA_RS16570	COG3706	GGDEF domain
DEIMA_RS16580	COG4251	negative regulation of phosphorylation
DEIMA_RS16590	COG4251	negative regulation of phosphorylation
DEIMA_RS16595	COG1045	serine acetyltransferase
DEIMA_RS16635	COG0477	Major facilitator Superfamily
DEIMA_RS16655	COG1309	transcriptional regulator
DEIMA_RS16675	COG1404	Belongs to the peptidase S8 family
DEIMA_RS16680	COG4251	negative regulation of phosphorylation
DEIMA_RS16700	COG2010	Cytochrome c
DEIMA_RS16735	COG0508	dehydrogenase complex catalyzes the overall conversion of
DEIMA_RS16735	COG0596	Alpha beta hydrolase
DEIMA_RS16775	COG0232	Belongs to the dGTPase family. Type 2 subfamily
DEIMA_RS16795	COG1846	Transcriptional regulator
DEIMA_RS16805	COG4251	negative regulation of phosphorylation
DEIMA_RS16845	COG3706	GGDEF domain
DEIMA_RS16850	COG5412	phage tail tape measure protein
DEIMA_RS16865	COG4251	negative regulation of phosphorylation
DEIMA_RS16870	COG4585	Histidine kinase
DEIMA_RS16890	COG5001	Diguanylate cyclase
DEIMA_RS16915	COG3706	GGDEF domain
DEIMA_RS16920	COG0784	Response regulator, receiver
DEIMA_RS16920	COG3437	response regulator, receiver
DEIMA_RS16960	COG1051	belongs to the nudix hydrolase family
DEIMA_RS16960	COG1056	cytidyltransferase-related domain
DEIMA_RS16965	COG2226	methyltransferase
DEIMA_RS16995	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
DEIMA_RS16995	COG2199	diguanylate cyclase activity
DEIMA_RS17050	COG4585	Histidine kinase
DEIMA_RS17085	COG2203	Gaf domain
DEIMA_RS17085	COG3706	GGDEF domain
DEIMA_RS17085	COG4251	negative regulation of phosphorylation
DEIMA_RS17085	COG5001	Diguanylate cyclase
DEIMA_RS17125	COG2340	Cysteine-rich secretory protein family