locus-tag	class	description
DALK_RS00010	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DALK_RS00015	COG0277	FAD linked oxidase domain protein
DALK_RS00020	COG2957	Belongs to the agmatine deiminase family
DALK_RS00040	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DALK_RS00090	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DALK_RS00105	COG5012	cobalamin binding
DALK_RS00110	COG2188	Transcriptional regulator
DALK_RS00120	COG0776	regulation of translation
DALK_RS00125	COG0470	DNA polymerase III
DALK_RS00130	COG1774	PSP1 C-terminal conserved region
DALK_RS00135	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DALK_RS00135	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DALK_RS00155	COG0596	Alpha beta hydrolase
DALK_RS00200	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DALK_RS00215	COG0751	glycine-tRNA ligase activity
DALK_RS00220	COG0752	glycyl-tRNA synthetase alpha subunit
DALK_RS00230	COG1381	Involved in DNA repair and RecF pathway recombination
DALK_RS00235	COG2239	Acts as a magnesium transporter
DALK_RS00240	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DALK_RS00275	COG1250	3-hydroxyacyl-CoA dehydrogenase
DALK_RS00285	COG1960	acyl-CoA dehydrogenase activity
DALK_RS00290	COG0183	Belongs to the thiolase family
DALK_RS00295	COG0183	Belongs to the thiolase family
DALK_RS00305	COG1024	Enoyl-CoA hydratase
DALK_RS00315	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DALK_RS00330	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DALK_RS00345	COG1022	Amp-dependent synthetase and ligase
DALK_RS00395	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DALK_RS00480	COG2814	Major facilitator Superfamily
DALK_RS00485	COG2199	diguanylate cyclase activity
DALK_RS00515	COG2226	methyltransferase
DALK_RS00550	COG2070	2-Nitropropane dioxygenase
DALK_RS00555	COG1960	acyl-CoA dehydrogenase activity
DALK_RS00570	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DALK_RS00585	COG1691	(AIR) carboxylase
DALK_RS00605	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
DALK_RS00615	COG0519	Catalyzes the synthesis of GMP from XMP
DALK_RS00615	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DALK_RS00620	COG0135	phosphoribosylanthranilate isomerase activity
DALK_RS00635	COG0776	regulation of translation
DALK_RS00650	COG0589	response to stress
DALK_RS00655	COG1024	Enoyl-CoA hydratase
DALK_RS00680	COG0427	acetyl-CoA hydrolase
DALK_RS00685	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DALK_RS00695	COG0670	Belongs to the BI1 family
DALK_RS00725	COG4895	conserved protein (DUF2196)
DALK_RS00770	COG2267	carboxylic ester hydrolase activity
DALK_RS00785	COG1024	Enoyl-CoA hydratase
DALK_RS00810	COG3177	Filamentation induced by cAMP protein fic
DALK_RS00825	COG0243	molybdopterin cofactor binding
DALK_RS00830	COG1309	transcriptional regulator
DALK_RS00875	COG2169	Transcriptional regulator
DALK_RS00895	COG2721	sulfolactate sulfo-lyase activity
DALK_RS00900	COG2721	sulfolactate sulfo-lyase activity
DALK_RS00915	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
DALK_RS00920	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DALK_RS00935	COG0066	3-isopropylmalate dehydratase activity
DALK_RS00940	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DALK_RS00945	COG0481	GTPase activity
DALK_RS00985	COG3119	arylsulfatase activity
DALK_RS01025	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS01055	COG0563	adenylate kinase activity
DALK_RS01060	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DALK_RS01065	COG0285	dihydrofolate synthase activity
DALK_RS01085	COG1960	acyl-CoA dehydrogenase activity
DALK_RS01110	COG1254	Belongs to the acylphosphatase family
DALK_RS01120	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
DALK_RS01160	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS01160	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS01165	COG1703	isobutyryl-CoA mutase activity
DALK_RS01175	COG0243	molybdopterin cofactor binding
DALK_RS01195	COG3118	belongs to the thioredoxin family
DALK_RS01200	COG0668	transmembrane transport
DALK_RS01205	COG2885	chlorophyll binding
DALK_RS01205	COG3047	cAMP biosynthetic process
DALK_RS01225	COG3385	transposase activity
DALK_RS01285	COG0126	phosphoglycerate kinase activity
DALK_RS01335	COG4689	acetoacetate decarboxylase
DALK_RS01340	COG1250	3-hydroxyacyl-CoA dehydrogenase
DALK_RS01360	COG3246	L-lysine catabolic process to acetate
DALK_RS01365	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS01380	COG0601	transmembrane transport
DALK_RS01385	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DALK_RS01390	COG0444	Belongs to the ABC transporter superfamily
DALK_RS01395	COG4608	Belongs to the ABC transporter superfamily
DALK_RS01405	COG0358	DNA primase activity
DALK_RS01480	COG0582	viral genome integration into host DNA
DALK_RS01525	COG0232	Belongs to the dGTPase family. Type 2 subfamily
DALK_RS01530	COG2067	long-chain fatty acid transport protein
DALK_RS01565	COG0745	RESPONSE REGULATOR receiver
DALK_RS01580	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS01590	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DALK_RS01600	COG1100	Small GTP-binding protein
DALK_RS01610	COG2373	Large extracellular alpha-helical protein
DALK_RS01615	COG4953	penicillin-binding protein 1C
DALK_RS01620	COG0745	RESPONSE REGULATOR receiver
DALK_RS01640	COG2885	chlorophyll binding
DALK_RS01640	COG3047	cAMP biosynthetic process
DALK_RS01655	COG5002	protein histidine kinase activity
DALK_RS01665	COG2852	Protein conserved in bacteria
DALK_RS01670	COG3385	transposase activity
DALK_RS01675	COG0745	RESPONSE REGULATOR receiver
DALK_RS01680	COG2304	oxidoreductase activity
DALK_RS01705	COG0745	RESPONSE REGULATOR receiver
DALK_RS01725	COG0390	transport system, permease component
DALK_RS01735	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS01785	COG4191	Histidine kinase
DALK_RS01800	COG4771	TonB-dependent receptor
DALK_RS01840	COG1519	Transferase
DALK_RS01845	COG1663	tetraacyldisaccharide 4'-kinase activity
DALK_RS01850	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DALK_RS01910	COG2835	tetraacyldisaccharide 4'-kinase activity
DALK_RS01965	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DALK_RS01965	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DALK_RS01975	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
DALK_RS01975	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
DALK_RS01980	COG1268	BioY protein
DALK_RS01990	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
DALK_RS01995	COG0569	domain protein
DALK_RS02000	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DALK_RS02005	COG0300	oxidoreductase activity
DALK_RS02025	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
DALK_RS02030	COG0375	protein maturation
DALK_RS02035	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DALK_RS02040	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DALK_RS02045	COG0105	UTP biosynthetic process
DALK_RS02050	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
DALK_RS02060	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DALK_RS02065	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DALK_RS02070	COG0424	maF-like protein
DALK_RS02075	COG1966	Carbon starvation protein
DALK_RS02080	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
DALK_RS02110	COG4974	Belongs to the 'phage' integrase family
DALK_RS02115	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DALK_RS02120	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DALK_RS02125	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DALK_RS02130	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DALK_RS02135	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DALK_RS02140	COG0137	argininosuccinate synthase activity
DALK_RS02145	COG0165	Argininosuccinate lyase
DALK_RS02155	COG0019	diaminopimelate decarboxylase activity
DALK_RS02160	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DALK_RS02165	COG0436	Aminotransferase
DALK_RS02180	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DALK_RS02185	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DALK_RS02255	COG4464	protein tyrosine phosphatase activity
DALK_RS02280	COG4566	intracellular signal transduction
DALK_RS02310	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
DALK_RS02315	COG4822	anaerobic cobalamin biosynthetic process
DALK_RS02320	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DALK_RS02325	COG1120	ATPase activity
DALK_RS02335	COG1797	cobyrinic acid a,c-diamide synthase activity
DALK_RS02355	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
DALK_RS02380	COG1492	cobalamin metabolic process
DALK_RS02390	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
DALK_RS02395	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DALK_RS02475	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DALK_RS02480	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DALK_RS02485	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DALK_RS02490	COG0840	transmembrane signaling receptor activity
DALK_RS02550	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DALK_RS02585	COG0183	Belongs to the thiolase family
DALK_RS02610	COG0525	valine-tRNA ligase activity
DALK_RS02620	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DALK_RS02630	COG1278	Cold shock
DALK_RS02655	COG1192	Involved in chromosome partitioning
DALK_RS02660	COG0006	proline dipeptidase activity
DALK_RS02695	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
DALK_RS02705	COG3077	Addiction module antitoxin, RelB DinJ family
DALK_RS02710	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DALK_RS02710	COG0493	'glutamate synthase
DALK_RS02735	COG3707	response regulator
DALK_RS02745	COG0688	phosphatidylethanolamine metabolic process
DALK_RS02755	COG0488	(ABC) transporter
DALK_RS02765	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS02855	COG2203	Gaf domain
DALK_RS02855	COG3706	GGDEF domain
DALK_RS02855	COG4251	negative regulation of phosphorylation
DALK_RS02855	COG5001	Diguanylate cyclase
DALK_RS02890	COG0196	riboflavin kinase activity
DALK_RS02900	COG0242	peptide deformylase activity
DALK_RS02905	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DALK_RS02910	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DALK_RS02910	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DALK_RS02915	COG0515	serine threonine protein kinase
DALK_RS02920	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DALK_RS02925	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
DALK_RS02935	COG0129	dihydroxy-acid dehydratase activity
DALK_RS02940	COG0028	Belongs to the TPP enzyme family
DALK_RS02945	COG0440	acetolactate synthase activity
DALK_RS02955	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DALK_RS02960	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DALK_RS02965	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DALK_RS02975	COG0436	Aminotransferase
DALK_RS02980	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DALK_RS02985	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
DALK_RS02990	COG0343	queuine tRNA-ribosyltransferase activity
DALK_RS02995	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DALK_RS03010	COG0840	transmembrane signaling receptor activity
DALK_RS03025	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DALK_RS03035	COG0438	transferase activity, transferring glycosyl groups
DALK_RS03040	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS03055	COG1136	(ABC) transporter
DALK_RS03055	COG0577	efflux transmembrane transporter activity
DALK_RS03060	COG1136	(ABC) transporter
DALK_RS03080	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
DALK_RS03085	COG1032	radical SAM domain protein
DALK_RS03105	COG0577	efflux transmembrane transporter activity
DALK_RS03105	COG1136	(ABC) transporter
DALK_RS03140	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS03205	COG0281	malic enzyme
DALK_RS03220	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DALK_RS03240	COG0126	phosphoglycerate kinase activity
DALK_RS03255	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
DALK_RS03285	COG1086	Polysaccharide biosynthesis protein
DALK_RS03290	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DALK_RS03295	COG0673	inositol 2-dehydrogenase activity
DALK_RS03305	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DALK_RS03310	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DALK_RS03315	COG2089	acid synthase
DALK_RS03355	COG0457	Tetratricopeptide repeat
DALK_RS03355	COG0463	Glycosyl transferase, family 2
DALK_RS03365	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DALK_RS03380	COG1516	flagellar protein fliS
DALK_RS03395	COG2204	response regulator
DALK_RS03400	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
DALK_RS03415	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
DALK_RS03420	COG1639	'signal transduction protein
DALK_RS03425	COG0745	RESPONSE REGULATOR receiver
DALK_RS03430	COG2201	protein-glutamate methylesterase activity
DALK_RS03435	COG2198	Histidine kinase
DALK_RS03435	COG0643	Histidine kinase
DALK_RS03470	COG2204	response regulator
DALK_RS03475	COG1815	bacterial-type flagellum-dependent cell motility
DALK_RS03485	COG1677	Flagellar hook-basal body complex protein FliE
DALK_RS03495	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DALK_RS03535	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DALK_RS03555	COG1151	hydroxylamine reductase activity
DALK_RS03580	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
DALK_RS03585	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
DALK_RS03615	COG0154	amidase activity
DALK_RS03620	COG0243	molybdopterin cofactor binding
DALK_RS03625	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS03635	COG4581	dead DEAH box helicase
DALK_RS03640	COG2186	Transcriptional regulator
DALK_RS03660	COG4177	L-phenylalanine transmembrane transporter activity
DALK_RS03665	COG0683	leucine binding
DALK_RS03675	COG2414	aldehyde ferredoxin oxidoreductase
DALK_RS03680	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DALK_RS03690	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DALK_RS03695	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DALK_RS03700	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
DALK_RS03705	COG0436	Aminotransferase
DALK_RS03740	COG0589	response to stress
DALK_RS03760	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
DALK_RS03775	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
DALK_RS03780	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS03785	COG1309	transcriptional regulator
DALK_RS03800	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DALK_RS03850	COG1525	nuclease
DALK_RS03875	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DALK_RS03875	COG0116	Belongs to the methyltransferase superfamily
DALK_RS03885	COG1053	succinate dehydrogenase
DALK_RS03890	COG3976	FMN-binding domain protein
DALK_RS03890	COG1053	succinate dehydrogenase
DALK_RS03895	COG2226	methyltransferase
DALK_RS03910	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
DALK_RS03940	COG0784	Response regulator, receiver
DALK_RS03940	COG4191	Histidine kinase
DALK_RS03950	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DALK_RS03955	COG1120	ATPase activity
DALK_RS03960	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DALK_RS03970	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
DALK_RS03985	COG0443	Heat shock 70 kDa protein
DALK_RS03995	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DALK_RS04000	COG0215	cysteine-tRNA ligase activity
DALK_RS04005	COG0556	nucleotide-excision repair
DALK_RS04010	COG1024	Enoyl-CoA hydratase
DALK_RS04015	COG0419	ATPase involved in DNA repair
DALK_RS04020	COG0420	3'-5' exonuclease activity
DALK_RS04025	COG0322	excinuclease ABC activity
DALK_RS04030	COG0351	phosphomethylpyrimidine kinase
DALK_RS04045	COG1024	Enoyl-CoA hydratase
DALK_RS04050	COG0840	transmembrane signaling receptor activity
DALK_RS04080	COG1196	nuclear chromosome segregation
DALK_RS04115	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
DALK_RS04140	COG0500	methyltransferase
DALK_RS04145	COG3152	Membrane
DALK_RS04175	COG0504	CTP synthase activity
DALK_RS04180	COG2183	response to ionizing radiation
DALK_RS04185	COG1490	D-aminoacyl-tRNA deacylase activity
DALK_RS04195	COG1362	aminopeptidase activity
DALK_RS04200	COG1024	Enoyl-CoA hydratase
DALK_RS04220	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS04230	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DALK_RS04235	COG1960	acyl-CoA dehydrogenase activity
DALK_RS04240	COG1960	acyl-CoA dehydrogenase activity
DALK_RS04255	COG1960	acyl-CoA dehydrogenase activity
DALK_RS04295	COG4974	Belongs to the 'phage' integrase family
DALK_RS04300	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DALK_RS04305	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS04310	COG1882	Formate acetyltransferase
DALK_RS04335	COG0653	protein targeting
DALK_RS04340	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DALK_RS04350	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
DALK_RS04355	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DALK_RS04365	COG1722	exodeoxyribonuclease VII activity
DALK_RS04400	COG0463	Glycosyl transferase, family 2
DALK_RS04405	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DALK_RS04410	COG2249	NAD(P)H dehydrogenase (quinone) activity
DALK_RS04415	COG0114	fumarate hydratase activity
DALK_RS04420	COG0626	cystathionine gamma-synthase activity
DALK_RS04440	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS04465	COG0371	Dehydrogenase
DALK_RS04490	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DALK_RS04495	COG4771	TonB-dependent receptor
DALK_RS04500	COG4166	transmembrane transport
DALK_RS04520	COG1024	Enoyl-CoA hydratase
DALK_RS04530	COG2201	protein-glutamate methylesterase activity
DALK_RS04535	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
DALK_RS04550	COG2205	protein histidine kinase activity
DALK_RS04555	COG0745	RESPONSE REGULATOR receiver
DALK_RS04560	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DALK_RS04565	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DALK_RS04570	COG1454	alcohol dehydrogenase
DALK_RS04575	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DALK_RS04590	COG0667	Aldo Keto reductase
DALK_RS04595	COG0366	Alpha amylase catalytic
DALK_RS04600	COG0297	glycogen (starch) synthase activity
DALK_RS04615	COG0596	Alpha beta hydrolase
DALK_RS04620	COG3385	transposase activity
DALK_RS04640	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS04645	COG2208	phosphoserine phosphatase activity
DALK_RS04650	COG0745	RESPONSE REGULATOR receiver
DALK_RS04665	COG1238	metal cluster binding
DALK_RS04670	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DALK_RS04685	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
DALK_RS04695	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS04700	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DALK_RS04715	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DALK_RS04725	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DALK_RS04730	COG0305	Participates in initiation and elongation during chromosome replication
DALK_RS04735	COG0359	binds to the 23S rRNA
DALK_RS04745	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DALK_RS04750	COG0360	Binds together with S18 to 16S ribosomal RNA
DALK_RS04760	COG5000	phosphorelay sensor kinase activity
DALK_RS04765	COG2204	response regulator
DALK_RS04770	COG0742	ribosomal rna small subunit methyltransferase
DALK_RS04775	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DALK_RS04780	COG0583	DNA-binding transcription factor activity
DALK_RS04785	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DALK_RS04805	COG0516	GMP reductase activity
DALK_RS04805	COG0517	IMP dehydrogenase activity
DALK_RS04810	COG0009	L-threonylcarbamoyladenylate synthase
DALK_RS04815	COG0539	negative regulation of cytoplasmic translation
DALK_RS04820	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
DALK_RS04825	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DALK_RS04830	COG3876	Protein conserved in bacteria
DALK_RS04840	COG1022	Amp-dependent synthetase and ligase
DALK_RS04875	COG2379	hydroxypyruvate reductase
DALK_RS04880	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DALK_RS04890	COG2226	methyltransferase
DALK_RS04895	COG3360	Dodecin
DALK_RS04910	COG0739	heme binding
DALK_RS04915	COG0352	thiamine-phosphate diphosphorylase activity
DALK_RS04925	COG1024	Enoyl-CoA hydratase
DALK_RS04930	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DALK_RS04940	COG2937	Belongs to the GPAT DAPAT family
DALK_RS04945	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DALK_RS04950	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
DALK_RS04955	COG4166	transmembrane transport
DALK_RS04960	COG4174	ABC transporter (Permease)
DALK_RS04970	COG0444	Belongs to the ABC transporter superfamily
DALK_RS04975	COG4608	Belongs to the ABC transporter superfamily
DALK_RS05010	COG0714	Associated with various cellular activities
DALK_RS05035	COG1366	Belongs to the anti-sigma-factor antagonist family
DALK_RS05045	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS05045	COG1902	pentaerythritol trinitrate reductase activity
DALK_RS05050	COG1309	transcriptional regulator
DALK_RS05065	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
DALK_RS05070	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DALK_RS05080	COG1256	bacterial-type flagellum assembly
DALK_RS05090	COG3951	Flagellar rod assembly protein muramidase FlgJ
DALK_RS05090	COG1705	Flagellar rod assembly protein muramidase FlgJ
DALK_RS05095	COG1706	bacterial-type flagellum-dependent cell motility
DALK_RS05100	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
DALK_RS05115	COG4786	Flagellar basal body rod
DALK_RS05145	COG1191	sigma factor activity
DALK_RS05155	COG1419	protein localization to endoplasmic reticulum
DALK_RS05160	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DALK_RS05165	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DALK_RS05175	COG1987	bacterial-type flagellum assembly
DALK_RS05180	COG1338	Plays a role in the flagellum-specific transport system
DALK_RS05205	COG1360	Flagellar Motor Protein
DALK_RS05235	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DALK_RS05245	COG0730	response to heat
DALK_RS05270	COG0166	Belongs to the GPI family
DALK_RS05320	COG1024	Enoyl-CoA hydratase
DALK_RS05345	COG1960	acyl-CoA dehydrogenase activity
DALK_RS05355	COG0116	Belongs to the methyltransferase superfamily
DALK_RS05390	COG1132	(ABC) transporter
DALK_RS05405	COG1366	Belongs to the anti-sigma-factor antagonist family
DALK_RS05425	COG2091	lysine biosynthetic process via aminoadipic acid
DALK_RS05465	COG2267	carboxylic ester hydrolase activity
DALK_RS05475	COG3958	Transketolase
DALK_RS05480	COG3959	Transketolase, thiamine diphosphate binding domain
DALK_RS05495	COG0686	Belongs to the AlaDH PNT family
DALK_RS05550	COG2204	response regulator
DALK_RS05555	COG3118	belongs to the thioredoxin family
DALK_RS05570	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS05575	COG0437	4 iron, 4 sulfur cluster binding
DALK_RS05605	COG4566	intracellular signal transduction
DALK_RS05620	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DALK_RS05635	COG0784	Response regulator, receiver
DALK_RS05635	COG4191	Histidine kinase
DALK_RS05650	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DALK_RS05665	COG2264	protein methyltransferase activity
DALK_RS05675	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
DALK_RS05705	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DALK_RS05760	COG0826	peptidase U32
DALK_RS05765	COG3385	transposase activity
DALK_RS05775	COG2135	peptidase activity
DALK_RS05790	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DALK_RS05795	COG0243	molybdopterin cofactor binding
DALK_RS05815	COG2205	protein histidine kinase activity
DALK_RS05825	COG0012	GTP binding
DALK_RS05830	COG0730	response to heat
DALK_RS05855	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS05865	COG0443	Heat shock 70 kDa protein
DALK_RS05900	COG2433	Pfam Transposase IS66
DALK_RS05940	COG1309	transcriptional regulator
DALK_RS05955	COG1012	belongs to the aldehyde dehydrogenase family
DALK_RS05965	COG1309	transcriptional regulator
DALK_RS05970	COG1022	Amp-dependent synthetase and ligase
DALK_RS05980	COG2030	dehydratase
DALK_RS05985	COG1960	acyl-CoA dehydrogenase activity
DALK_RS06005	COG0840	transmembrane signaling receptor activity
DALK_RS06030	COG0527	aspartate kinase activity
DALK_RS06035	COG1917	Cupin 2, conserved barrel domain protein
DALK_RS06040	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DALK_RS06050	COG2200	EAL domain
DALK_RS06055	COG0438	transferase activity, transferring glycosyl groups
DALK_RS06075	COG0427	acetyl-CoA hydrolase
DALK_RS06080	COG1217	gtp-binding protein TYPA
DALK_RS06090	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DALK_RS06095	COG0758	DNA mediated transformation
DALK_RS06095	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DALK_RS06100	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DALK_RS06105	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DALK_RS06110	COG1862	Preprotein translocase
DALK_RS06115	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DALK_RS06130	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
DALK_RS06135	COG1530	ribonuclease E activity
DALK_RS06140	COG0495	leucyl-tRNA aminoacylation
DALK_RS06150	COG0268	Binds directly to 16S ribosomal RNA
DALK_RS06170	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DALK_RS06190	COG0733	neurotransmitter:sodium symporter activity
DALK_RS06200	COG0346	lactoylglutathione lyase activity
DALK_RS06250	COG2358	TRAP transporter, solute receptor (TAXI family
DALK_RS06260	COG0330	HflC and HflK could
DALK_RS06290	COG0427	acetyl-CoA hydrolase
DALK_RS06345	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DALK_RS06345	COG0512	Glutamine amidotransferase of anthranilate synthase
DALK_RS06350	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DALK_RS06355	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DALK_RS06365	COG0616	signal peptide processing
DALK_RS06370	COG0546	phosphoglycolate phosphatase activity
DALK_RS06380	COG0426	domain, Protein
DALK_RS06380	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DALK_RS06385	COG1469	GTP cyclohydrolase I activity
DALK_RS06390	COG0037	tRNA processing
DALK_RS06395	COG1758	RNA polymerase activity
DALK_RS06400	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DALK_RS06405	COG0473	3-isopropylmalate dehydrogenase activity
DALK_RS06410	COG1183	phosphatidylcholine synthase activity
DALK_RS06415	COG0688	phosphatidylethanolamine metabolic process
DALK_RS06420	COG1214	PFAM Peptidase M22, glycoprotease
DALK_RS06425	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DALK_RS06430	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
DALK_RS06435	COG0483	inositol monophosphate 1-phosphatase activity
DALK_RS06450	COG2204	response regulator
DALK_RS06470	COG5006	permease, DMT superfamily
DALK_RS06480	COG0765	amino acid transport
DALK_RS06495	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DALK_RS06520	COG1131	(ABC) transporter
DALK_RS06525	COG1333	cytochrome c biogenesis protein
DALK_RS06530	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DALK_RS06540	COG0243	molybdopterin cofactor binding
DALK_RS06545	COG0437	4 iron, 4 sulfur cluster binding
DALK_RS06550	COG5557	Pfam Polysulphide reductase, NrfD
DALK_RS06565	COG3273	potassium ion transport
DALK_RS06565	COG0471	metal ion transport
DALK_RS06575	COG2201	protein-glutamate methylesterase activity
DALK_RS06580	COG5002	protein histidine kinase activity
DALK_RS06625	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DALK_RS06625	COG2205	protein histidine kinase activity
DALK_RS06630	COG3240	lipase activity
DALK_RS06640	COG3290	protein histidine kinase activity
DALK_RS06640	COG3829	transcription factor binding
DALK_RS06680	COG3604	Transcriptional regulator
DALK_RS06685	COG1024	Enoyl-CoA hydratase
DALK_RS06690	COG3385	transposase activity
DALK_RS06695	COG1024	Enoyl-CoA hydratase
DALK_RS06700	COG1960	acyl-CoA dehydrogenase activity
DALK_RS06775	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DALK_RS06805	COG1454	alcohol dehydrogenase
DALK_RS06810	COG4032	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
DALK_RS06810	COG0028	Belongs to the TPP enzyme family
DALK_RS06870	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DALK_RS06885	COG5434	Belongs to the glycosyl hydrolase 28 family
DALK_RS06890	COG1063	alcohol dehydrogenase
DALK_RS06965	COG4974	Belongs to the 'phage' integrase family
DALK_RS06980	COG0149	triose-phosphate isomerase activity
DALK_RS07000	COG1660	Displays ATPase and GTPase activities
DALK_RS07005	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DALK_RS07020	COG1137	ATPase activity
DALK_RS07035	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
DALK_RS07040	COG2877	3-deoxy-8-phosphooctulonate synthase activity
DALK_RS07055	COG0681	Belongs to the peptidase S26 family
DALK_RS07060	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DALK_RS07065	COG2204	response regulator
DALK_RS07080	COG1396	sequence-specific DNA binding
DALK_RS07080	COG3800	Transcriptional regulator
DALK_RS07085	COG5012	cobalamin binding
DALK_RS07100	COG1116	anion transmembrane transporter activity
DALK_RS07105	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DALK_RS07115	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
DALK_RS07120	COG0204	Acyl-transferase
DALK_RS07190	COG1309	transcriptional regulator
DALK_RS07205	COG0385	Bile acid
DALK_RS07210	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS07225	COG2211	Major facilitator Superfamily
DALK_RS07240	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
DALK_RS07255	COG1441	menaquinone biosynthetic process
DALK_RS07310	COG2204	response regulator
DALK_RS07315	COG1187	pseudouridine synthase activity
DALK_RS07320	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
DALK_RS07325	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
DALK_RS07325	COG0546	phosphoglycolate phosphatase activity
DALK_RS07330	COG0277	FAD linked oxidase domain protein
DALK_RS07350	COG0745	RESPONSE REGULATOR receiver
DALK_RS07355	COG5002	protein histidine kinase activity
DALK_RS07360	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DALK_RS07365	COG0573	inorganic phosphate transmembrane transporter activity
DALK_RS07370	COG0581	inorganic phosphate transmembrane transporter activity
DALK_RS07375	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DALK_RS07385	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DALK_RS07390	COG0159	tryptophan synthase activity
DALK_RS07400	COG0135	phosphoribosylanthranilate isomerase activity
DALK_RS07405	COG0134	indole-3-glycerol-phosphate synthase activity
DALK_RS07410	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DALK_RS07415	COG0512	Glutamine amidotransferase of anthranilate synthase
DALK_RS07415	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DALK_RS07420	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DALK_RS07425	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
DALK_RS07445	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DALK_RS07520	COG0544	peptidyl-prolyl cis-trans isomerase activity
DALK_RS07525	COG0740	serine-type endopeptidase activity
DALK_RS07530	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DALK_RS07535	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DALK_RS07560	COG3335	DDE superfamily endonuclease
DALK_RS07570	COG3385	transposase activity
DALK_RS07585	COG1063	alcohol dehydrogenase
DALK_RS07595	COG1960	acyl-CoA dehydrogenase activity
DALK_RS07600	COG3153	acetyltransferase
DALK_RS07670	COG4191	Histidine kinase
DALK_RS07705	COG3209	COG3209 Rhs family protein
DALK_RS07750	COG2226	methyltransferase
DALK_RS07755	COG0629	single-stranded DNA binding
DALK_RS07825	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DALK_RS07845	COG0535	radical SAM domain protein
DALK_RS07845	COG1433	Dinitrogenase iron-molybdenum cofactor
DALK_RS07870	COG0347	Belongs to the P(II) protein family
DALK_RS07880	COG1348	The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex which has 2 components the iron protein and the molybdenum-iron protein
DALK_RS07885	COG1846	Transcriptional regulator
DALK_RS07900	COG2770	Histidine kinase
DALK_RS07900	COG2208	phosphoserine phosphatase activity
DALK_RS07905	COG1487	ribonuclease activity
DALK_RS07920	COG4608	Belongs to the ABC transporter superfamily
DALK_RS07925	COG0444	Belongs to the ABC transporter superfamily
DALK_RS07930	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DALK_RS07945	COG4221	oxidoreductase activity
DALK_RS07955	COG3385	transposase activity
DALK_RS07965	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DALK_RS07965	COG3153	acetyltransferase
DALK_RS07970	COG3246	L-lysine catabolic process to acetate
DALK_RS07975	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
DALK_RS08010	COG0714	Associated with various cellular activities
DALK_RS08030	COG0701	Predicted permease
DALK_RS08050	COG0521	Mo-molybdopterin cofactor biosynthetic process
DALK_RS08055	COG1309	transcriptional regulator
DALK_RS08065	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DALK_RS08105	COG1233	COG1233 Phytoene dehydrogenase and related
DALK_RS08110	COG1233	COG1233 Phytoene dehydrogenase and related
DALK_RS08135	COG0840	transmembrane signaling receptor activity
DALK_RS08150	COG0745	RESPONSE REGULATOR receiver
DALK_RS08155	COG4452	Inner membrane protein CreD
DALK_RS08180	COG0668	transmembrane transport
DALK_RS08185	COG2373	Large extracellular alpha-helical protein
DALK_RS08200	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS08230	COG2267	carboxylic ester hydrolase activity
DALK_RS08240	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
DALK_RS08300	COG2204	response regulator
DALK_RS08305	COG1639	'signal transduction protein
DALK_RS08310	COG2204	response regulator
DALK_RS08340	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DALK_RS08375	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DALK_RS08390	COG1846	Transcriptional regulator
DALK_RS08410	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DALK_RS08410	COG0493	'glutamate synthase
DALK_RS08420	COG1013	pyruvate-flavodoxin oxidoreductase activity
DALK_RS08425	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
DALK_RS08425	COG0674	pyruvate-flavodoxin oxidoreductase activity
DALK_RS08445	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DALK_RS08470	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DALK_RS08475	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
DALK_RS08495	COG1918	ferrous iron import across plasma membrane
DALK_RS08495	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
DALK_RS08540	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DALK_RS08540	COG0617	tRNA 3'-terminal CCA addition
DALK_RS08540	COG0517	IMP dehydrogenase activity
DALK_RS08545	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DALK_RS08545	COG0617	tRNA 3'-terminal CCA addition
DALK_RS08545	COG3620	sequence-specific DNA binding
DALK_RS08555	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DALK_RS08560	COG0776	regulation of translation
DALK_RS08565	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DALK_RS08570	COG1086	Polysaccharide biosynthesis protein
DALK_RS08585	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DALK_RS08590	COG2089	acid synthase
DALK_RS08600	COG1083	cytidylyl-transferase
DALK_RS08605	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DALK_RS08625	COG1442	glycosyl transferase family 8
DALK_RS08625	COG1216	Glycosyl transferase, family 2
DALK_RS08640	COG1083	cytidylyl-transferase
DALK_RS08645	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
DALK_RS08650	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DALK_RS08655	COG0673	inositol 2-dehydrogenase activity
DALK_RS08660	COG1132	(ABC) transporter
DALK_RS08675	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DALK_RS08675	COG0425	Belongs to the sulfur carrier protein TusA family
DALK_RS08680	COG0357	Ribosomal RNA small subunit methyltransferase G
DALK_RS08710	COG3012	SEC-C Motif Domain Protein
DALK_RS08750	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DALK_RS08760	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
DALK_RS08785	COG2046	Belongs to the sulfate adenylyltransferase family
DALK_RS08785	COG0529	Catalyzes the synthesis of activated sulfate
DALK_RS08790	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
DALK_RS08840	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
DALK_RS08865	COG1024	Enoyl-CoA hydratase
DALK_RS08875	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DALK_RS08875	COG2755	lipolytic protein G-D-S-L family
DALK_RS08880	COG4175	Glycine betaine
DALK_RS08885	COG4176	ABC-type proline glycine betaine transport system permease component
DALK_RS08890	COG2113	Glycine betaine
DALK_RS08895	COG1846	Transcriptional regulator
DALK_RS08915	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS08915	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS08920	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS08920	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS08925	COG1703	isobutyryl-CoA mutase activity
DALK_RS08935	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DALK_RS08970	COG1024	Enoyl-CoA hydratase
DALK_RS08970	COG1250	3-hydroxyacyl-CoA dehydrogenase
DALK_RS08985	COG1024	Enoyl-CoA hydratase
DALK_RS08990	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DALK_RS09015	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
DALK_RS09035	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DALK_RS09040	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DALK_RS09045	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DALK_RS09055	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS09060	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DALK_RS09080	COG1830	Aldolase
DALK_RS09085	COG1465	3-dehydroquinate synthase
DALK_RS09090	COG0077	Prephenate dehydratase
DALK_RS09090	COG1605	Chorismate mutase
DALK_RS09095	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DALK_RS09100	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DALK_RS09105	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DALK_RS09110	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DALK_RS09115	COG0287	Prephenate dehydrogenase
DALK_RS09115	COG1605	Chorismate mutase
DALK_RS09135	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DALK_RS09140	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DALK_RS09145	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DALK_RS09155	COG2161	toxin-antitoxin pair type II binding
DALK_RS09175	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
DALK_RS09185	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DALK_RS09195	COG0731	radical SAM domain protein
DALK_RS09195	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DALK_RS09200	COG1459	type II secretion system
DALK_RS09205	COG4191	Histidine kinase
DALK_RS09210	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
DALK_RS09220	COG1136	(ABC) transporter
DALK_RS09225	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DALK_RS09235	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DALK_RS09240	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DALK_RS09260	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DALK_RS09270	COG1132	(ABC) transporter
DALK_RS09275	COG0463	Glycosyl transferase, family 2
DALK_RS09280	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DALK_RS09285	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DALK_RS09290	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DALK_RS09295	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DALK_RS09300	COG0072	phenylalanine-tRNA ligase activity
DALK_RS09365	COG0204	Acyl-transferase
DALK_RS09400	COG3064	Membrane
DALK_RS09400	COG0437	4 iron, 4 sulfur cluster binding
DALK_RS09405	COG5557	Pfam Polysulphide reductase, NrfD
DALK_RS09410	COG0484	heat shock protein binding
DALK_RS09420	COG4968	Prepilin-type N-terminal cleavage methylation domain
DALK_RS09435	COG0129	dihydroxy-acid dehydratase activity
DALK_RS09475	COG0668	transmembrane transport
DALK_RS09480	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
DALK_RS09490	COG1253	flavin adenine dinucleotide binding
DALK_RS09530	COG0778	Nitroreductase
DALK_RS09535	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS09550	COG1309	transcriptional regulator
DALK_RS09590	COG3064	Membrane
DALK_RS09590	COG0437	4 iron, 4 sulfur cluster binding
DALK_RS09595	COG5557	Pfam Polysulphide reductase, NrfD
DALK_RS09630	COG1119	ATPase activity
DALK_RS09635	COG3385	transposase activity
DALK_RS09650	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
DALK_RS09660	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
DALK_RS09680	COG0714	Associated with various cellular activities
DALK_RS09685	COG2208	phosphoserine phosphatase activity
DALK_RS09695	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DALK_RS09710	COG4797	methyltransferase
DALK_RS09710	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DALK_RS09725	COG0432	Pfam Uncharacterised protein family UPF0047
DALK_RS09745	COG0482	sulfurtransferase activity
DALK_RS09750	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DALK_RS09755	COG0203	ribosomal protein L17
DALK_RS09760	COG0202	RNA polymerase activity
DALK_RS09765	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DALK_RS09770	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DALK_RS09775	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DALK_RS09780	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DALK_RS09790	COG0201	protein transport
DALK_RS09795	COG0200	Binds to the 23S rRNA
DALK_RS09800	COG1841	ribosomal large subunit assembly
DALK_RS09805	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DALK_RS09810	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DALK_RS09815	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DALK_RS09820	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DALK_RS09825	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DALK_RS09830	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DALK_RS09835	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DALK_RS09840	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DALK_RS09845	COG0255	Belongs to the universal ribosomal protein uL29 family
DALK_RS09850	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DALK_RS09855	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DALK_RS09860	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DALK_RS09865	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DALK_RS09870	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DALK_RS09875	COG0089	rRNA binding
DALK_RS09880	COG0088	Forms part of the polypeptide exit tunnel
DALK_RS09885	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DALK_RS09890	COG0051	transcription antitermination factor activity, RNA binding
DALK_RS09895	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DALK_RS09900	COG0049	tRNA binding
DALK_RS09905	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DALK_RS09910	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DALK_RS09915	COG0085	RNA polymerase activity
DALK_RS09920	COG0222	ribosome binding
DALK_RS09925	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DALK_RS09930	COG0081	regulation of translation
DALK_RS09935	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DALK_RS09955	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DALK_RS09960	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DALK_RS09985	COG1388	LysM domain
DALK_RS09985	COG3942	CHAP domain
DALK_RS09990	COG1561	YicC-like family, N-terminal region
DALK_RS09995	COG2052	Domain of unknown function (DUF370)
DALK_RS10005	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DALK_RS10010	COG0538	isocitrate dehydrogenase activity
DALK_RS10025	COG1040	competence protein
DALK_RS10030	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DALK_RS10035	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
DALK_RS10035	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
DALK_RS10040	COG1496	oxidoreductase activity
DALK_RS10045	COG0543	2 iron, 2 sulfur cluster binding
DALK_RS10060	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DALK_RS10065	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
DALK_RS10070	COG2890	protein-(glutamine-N5) methyltransferase activity
DALK_RS10075	COG1309	transcriptional regulator
DALK_RS10115	COG2270	Major facilitator Superfamily
DALK_RS10170	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DALK_RS10180	COG2204	response regulator
DALK_RS10185	COG5002	protein histidine kinase activity
DALK_RS10210	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DALK_RS10215	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DALK_RS10230	COG1215	transferase activity, transferring glycosyl groups
DALK_RS10265	COG0071	Belongs to the small heat shock protein (HSP20) family
DALK_RS10270	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS10275	COG0204	Acyl-transferase
DALK_RS10290	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS10300	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS10325	COG0683	leucine binding
DALK_RS10335	COG1032	radical SAM domain protein
DALK_RS10370	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DALK_RS10375	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DALK_RS10390	COG0310	cobalt ion transport
DALK_RS10405	COG1122	ATPase activity
DALK_RS10435	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
DALK_RS10440	COG0298	carbon dioxide binding
DALK_RS10465	COG1943	Transposase
DALK_RS10475	COG0598	Magnesium transport protein CorA
DALK_RS10495	COG1131	(ABC) transporter
DALK_RS10500	COG0842	Transport permease protein
DALK_RS10505	COG0842	Transport permease protein
DALK_RS10510	COG1047	Peptidyl-prolyl cis-trans
DALK_RS10525	COG1151	hydroxylamine reductase activity
DALK_RS10555	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS10560	COG1086	Polysaccharide biosynthesis protein
DALK_RS10570	COG0300	oxidoreductase activity
DALK_RS10585	COG1595	DNA-templated transcription, initiation
DALK_RS10605	COG1131	(ABC) transporter
DALK_RS10620	COG0501	Belongs to the peptidase M48B family
DALK_RS10655	COG0151	Belongs to the GarS family
DALK_RS10660	COG0009	L-threonylcarbamoyladenylate synthase
DALK_RS10690	COG1309	transcriptional regulator
DALK_RS10695	COG1024	Enoyl-CoA hydratase
DALK_RS10715	COG2233	PERMEase
DALK_RS10730	COG1960	acyl-CoA dehydrogenase activity
DALK_RS10735	COG1024	Enoyl-CoA hydratase
DALK_RS10745	COG2267	carboxylic ester hydrolase activity
DALK_RS10750	COG0563	adenylate kinase activity
DALK_RS10755	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DALK_RS10795	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DALK_RS10810	COG0537	adenosine 5'-monophosphoramidase activity
DALK_RS10815	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DALK_RS10825	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DALK_RS10870	COG0826	peptidase U32
DALK_RS10885	COG1960	acyl-CoA dehydrogenase activity
DALK_RS10895	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DALK_RS10900	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DALK_RS10905	COG1695	Transcriptional regulator
DALK_RS10935	COG0582	viral genome integration into host DNA
DALK_RS11050	COG1506	peptidase
DALK_RS11050	COG4946	Tricorn protease homolog
DALK_RS11050	COG0823	Involved in the tonB-independent uptake of proteins
DALK_RS11130	COG0583	DNA-binding transcription factor activity
DALK_RS11140	COG2205	protein histidine kinase activity
DALK_RS11150	COG0488	(ABC) transporter
DALK_RS11160	COG0023	Translation Initiation Factor
DALK_RS11175	COG2823	Periplasmic or secreted lipoprotein
DALK_RS11195	COG1024	Enoyl-CoA hydratase
DALK_RS11265	COG2204	response regulator
DALK_RS11270	COG2116	formate transmembrane transporter activity
DALK_RS11375	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DALK_RS11375	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
DALK_RS11385	COG2070	2-Nitropropane dioxygenase
DALK_RS11390	COG1024	Enoyl-CoA hydratase
DALK_RS11395	COG1047	Peptidyl-prolyl cis-trans
DALK_RS11435	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DALK_RS11440	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DALK_RS11450	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DALK_RS11455	COG1404	Belongs to the peptidase S8 family
DALK_RS11460	COG0464	growth
DALK_RS11475	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
DALK_RS11475	COG3264	Mechanosensitive ion channel
DALK_RS11480	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DALK_RS11485	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DALK_RS11530	COG0438	transferase activity, transferring glycosyl groups
DALK_RS11545	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DALK_RS11565	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
DALK_RS11580	COG0674	pyruvate-flavodoxin oxidoreductase activity
DALK_RS11625	COG2204	response regulator
DALK_RS11635	COG0471	metal ion transport
DALK_RS11640	COG2204	response regulator
DALK_RS11650	COG3852	Histidine kinase
DALK_RS11655	COG2204	response regulator
DALK_RS11670	COG2204	response regulator
DALK_RS11675	COG2204	response regulator
DALK_RS11685	COG5002	protein histidine kinase activity
DALK_RS11690	COG2204	response regulator
DALK_RS11705	COG2814	Major facilitator Superfamily
DALK_RS11730	COG0489	protein tyrosine kinase activity
DALK_RS11755	COG4191	Histidine kinase
DALK_RS11780	COG3604	Transcriptional regulator
DALK_RS11790	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
DALK_RS11795	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
DALK_RS11805	COG0298	carbon dioxide binding
DALK_RS11810	COG4191	Histidine kinase
DALK_RS11820	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
DALK_RS11865	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DALK_RS11870	COG2011	ABC-type metal ion transport system permease component
DALK_RS11880	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DALK_RS11950	COG0602	queuosine metabolic process
DALK_RS11970	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS11975	COG2814	Major facilitator Superfamily
DALK_RS11985	COG0513	Belongs to the DEAD box helicase family
DALK_RS11995	COG0745	RESPONSE REGULATOR receiver
DALK_RS12000	COG1418	mRNA catabolic process
DALK_RS12020	COG1960	acyl-CoA dehydrogenase activity
DALK_RS12025	COG1960	acyl-CoA dehydrogenase activity
DALK_RS12045	COG2204	response regulator
DALK_RS12055	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DALK_RS12060	COG0668	transmembrane transport
DALK_RS12090	COG0071	Belongs to the small heat shock protein (HSP20) family
DALK_RS12100	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DALK_RS12110	COG1151	hydroxylamine reductase activity
DALK_RS12135	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS12135	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DALK_RS12145	COG3272	Protein of unknown function (DUF1722)
DALK_RS12165	COG0835	chemotaxis
DALK_RS12170	COG0745	RESPONSE REGULATOR receiver
DALK_RS12175	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DALK_RS12190	COG1271	oxidase subunit
DALK_RS12195	COG1294	oxidase, subunit
DALK_RS12220	COG1192	Involved in chromosome partitioning
DALK_RS12230	COG0735	belongs to the Fur family
DALK_RS12235	COG1592	Rubrerythrin
DALK_RS12240	COG2033	superoxide reductase activity
DALK_RS12265	COG0426	domain, Protein
DALK_RS12285	COG1489	DNA binding
DALK_RS12320	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DALK_RS12345	COG1968	undecaprenyl-diphosphatase activity
DALK_RS12360	COG0352	thiamine-phosphate diphosphorylase activity
DALK_RS12365	COG1635	Involved in the biosynthesis of the thiazole moiety of thiamine. Catalyzes the conversion of NAD and glycine to adenosine diphosphate 5-(2-hydroxyethyl)-4-methylthiazole-2-carboxylate (ADT), an adenylated thiazole intermediate, using free sulfide as a source of sulfur
DALK_RS12385	COG2161	toxin-antitoxin pair type II binding
DALK_RS12410	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DALK_RS12415	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DALK_RS12425	COG3118	belongs to the thioredoxin family
DALK_RS12465	COG0540	Belongs to the ATCase OTCase family
DALK_RS12485	COG1408	metallophosphoesterase
DALK_RS12490	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
DALK_RS12495	COG5002	protein histidine kinase activity
DALK_RS12505	COG2878	Part of a membrane complex involved in electron transport
DALK_RS12570	COG3706	GGDEF domain
DALK_RS12590	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DALK_RS12600	COG0402	S-adenosylhomocysteine deaminase activity
DALK_RS12615	COG1111	helicase
DALK_RS12615	COG1205	dead DEAH box helicase
DALK_RS12630	COG2046	Belongs to the sulfate adenylyltransferase family
DALK_RS12645	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS12660	COG2226	methyltransferase
DALK_RS12675	COG2267	carboxylic ester hydrolase activity
DALK_RS12685	COG1278	Cold shock
DALK_RS12690	COG0513	Belongs to the DEAD box helicase family
DALK_RS12725	COG2062	phosphohistidine phosphatase, SixA
DALK_RS12735	COG1309	transcriptional regulator
DALK_RS12755	COG0730	response to heat
DALK_RS12760	COG1024	Enoyl-CoA hydratase
DALK_RS12765	COG1606	tRNA processing
DALK_RS12780	COG0515	serine threonine protein kinase
DALK_RS12780	COG2815	serine threonine protein kinase
DALK_RS12795	COG2815	serine threonine protein kinase
DALK_RS12795	COG0515	serine threonine protein kinase
DALK_RS12825	COG1100	Small GTP-binding protein
DALK_RS12845	COG2204	response regulator
DALK_RS12850	COG2885	chlorophyll binding
DALK_RS12870	COG0693	protein deglycase activity
DALK_RS12890	COG0028	Belongs to the TPP enzyme family
DALK_RS12920	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
DALK_RS12930	COG1091	dTDP-4-dehydrorhamnose reductase activity
DALK_RS12945	COG1134	teichoic acid transport
DALK_RS12945	COG1388	LysM domain
DALK_RS12955	COG0667	Aldo Keto reductase
DALK_RS12965	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DALK_RS12965	COG4651	solute:proton antiporter activity
DALK_RS12980	COG4977	sequence-specific DNA binding
DALK_RS13000	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS13000	COG1902	pentaerythritol trinitrate reductase activity
DALK_RS13020	COG0437	4 iron, 4 sulfur cluster binding
DALK_RS13025	COG0243	molybdopterin cofactor binding
DALK_RS13045	COG3852	Histidine kinase
DALK_RS13050	COG2204	response regulator
DALK_RS13055	COG4260	virion core protein, lumpy skin disease virus
DALK_RS13075	COG3604	Transcriptional regulator
DALK_RS13100	COG0183	Belongs to the thiolase family
DALK_RS13105	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
DALK_RS13125	COG1309	transcriptional regulator
DALK_RS13130	COG1960	acyl-CoA dehydrogenase activity
DALK_RS13140	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DALK_RS13150	COG0439	Biotin carboxylase
DALK_RS13165	COG0534	Mate efflux family protein
DALK_RS13170	COG3706	GGDEF domain
DALK_RS13175	COG0745	RESPONSE REGULATOR receiver
DALK_RS13185	COG3383	formate dehydrogenase (NAD+) activity
DALK_RS13190	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
DALK_RS13220	COG3005	denitrification pathway
DALK_RS13230	COG2197	response regulator
DALK_RS13245	COG2358	TRAP transporter, solute receptor (TAXI family
DALK_RS13250	COG0076	glutamate decarboxylase activity
DALK_RS13265	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DALK_RS13285	COG1063	alcohol dehydrogenase
DALK_RS13300	COG1882	Formate acetyltransferase
DALK_RS13305	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DALK_RS13310	COG0107	imidazoleglycerol-phosphate synthase activity
DALK_RS13325	COG0587	DNA-directed DNA polymerase activity
DALK_RS13335	COG1937	Protein conserved in bacteria
DALK_RS13340	COG1230	cation diffusion facilitator family transporter
DALK_RS13365	COG1042	CoA-binding domain protein
DALK_RS13365	COG0045	succinate-CoA ligase (ADP-forming) activity
DALK_RS13365	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DALK_RS13370	COG1090	epimerase
DALK_RS13415	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DALK_RS13420	COG4783	chaperone-mediated protein folding
DALK_RS13435	COG2195	Cleaves the N-terminal amino acid of tripeptides
DALK_RS13545	COG2433	Pfam Transposase IS66
DALK_RS13600	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DALK_RS13600	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DALK_RS13605	COG1242	4 iron, 4 sulfur cluster binding
DALK_RS13610	COG0445	tRNA wobble uridine modification
DALK_RS13625	COG0183	Belongs to the thiolase family
DALK_RS13630	COG1250	3-hydroxyacyl-CoA dehydrogenase
DALK_RS13635	COG1024	Enoyl-CoA hydratase
DALK_RS13640	COG1960	acyl-CoA dehydrogenase activity
DALK_RS13645	COG4667	esterase of the alpha-beta hydrolase superfamily
DALK_RS13685	COG1045	serine acetyltransferase
DALK_RS13700	COG1408	metallophosphoesterase
DALK_RS13715	COG1960	acyl-CoA dehydrogenase activity
DALK_RS13720	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS13725	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DALK_RS13730	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DALK_RS13750	COG3385	transposase activity
DALK_RS13755	COG1960	acyl-CoA dehydrogenase activity
DALK_RS13760	COG1960	acyl-CoA dehydrogenase activity
DALK_RS13765	COG1960	acyl-CoA dehydrogenase activity
DALK_RS13775	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DALK_RS13795	COG1309	transcriptional regulator
DALK_RS13810	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DALK_RS13815	COG0587	DNA-directed DNA polymerase activity
DALK_RS13825	COG0045	succinate-CoA ligase (ADP-forming) activity
DALK_RS13825	COG1042	CoA-binding domain protein
DALK_RS13825	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DALK_RS13850	COG2719	SpoVR family
DALK_RS13885	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DALK_RS13890	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DALK_RS13895	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DALK_RS13900	COG1611	Belongs to the LOG family
DALK_RS13960	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DALK_RS13995	COG1013	pyruvate-flavodoxin oxidoreductase activity
DALK_RS14000	COG0674	pyruvate-flavodoxin oxidoreductase activity
DALK_RS14000	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
DALK_RS14005	COG1144	Oxidoreductase
DALK_RS14035	COG1278	Cold shock
DALK_RS14040	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
DALK_RS14095	COG1321	iron dependent repressor
DALK_RS14100	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
DALK_RS14125	COG1918	ferrous iron import across plasma membrane
DALK_RS14125	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
DALK_RS14135	COG3706	GGDEF domain
DALK_RS14155	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DALK_RS14175	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DALK_RS14175	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DALK_RS14210	COG1309	transcriptional regulator
DALK_RS14215	COG1703	isobutyryl-CoA mutase activity
DALK_RS14215	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS14215	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS14220	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DALK_RS14225	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DALK_RS14230	COG0124	histidyl-tRNA synthetase
DALK_RS14260	COG0148	phosphopyruvate hydratase activity
DALK_RS14270	COG0154	amidase activity
DALK_RS14280	COG2414	aldehyde ferredoxin oxidoreductase
DALK_RS14335	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
DALK_RS14350	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DALK_RS14355	COG0658	competence protein
DALK_RS14355	COG2333	competence protein COMEC
DALK_RS14360	COG2814	Major facilitator Superfamily
DALK_RS14375	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DALK_RS14375	COG3008	intermembrane lipid transfer
DALK_RS14380	COG1127	ABC transporter
DALK_RS14385	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DALK_RS14390	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
DALK_RS14400	COG1943	Transposase
DALK_RS14490	COG0582	viral genome integration into host DNA
DALK_RS14505	COG1216	Glycosyl transferase, family 2
DALK_RS14505	COG0463	Glycosyl transferase, family 2
DALK_RS14525	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS14535	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DALK_RS14565	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
DALK_RS14565	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
DALK_RS14585	COG1331	Highly conserved protein containing a thioredoxin domain
DALK_RS14595	COG4191	Histidine kinase
DALK_RS14595	COG0784	Response regulator, receiver
DALK_RS14615	COG0247	lactate metabolic process
DALK_RS14615	COG2181	nitrate reductase activity
DALK_RS14620	COG3706	GGDEF domain
DALK_RS14625	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DALK_RS14650	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DALK_RS14665	COG0210	DNA helicase
DALK_RS14685	COG1074	ATP-dependent DNA helicase activity
DALK_RS14690	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DALK_RS14720	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
DALK_RS14735	COG0356	it plays a direct role in the translocation of protons across the membrane
DALK_RS14740	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DALK_RS14745	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
DALK_RS14755	COG0123	including yeast histone deacetylase and acetoin utilization protein
DALK_RS14785	COG0071	Belongs to the small heat shock protein (HSP20) family
DALK_RS14820	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DALK_RS14830	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DALK_RS14835	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DALK_RS14880	COG2814	Major facilitator Superfamily
DALK_RS14890	COG1131	(ABC) transporter
DALK_RS14930	COG1902	pentaerythritol trinitrate reductase activity
DALK_RS14930	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS14975	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DALK_RS14980	COG2264	protein methyltransferase activity
DALK_RS15015	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DALK_RS15020	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
DALK_RS15045	COG0411	ABC transporter
DALK_RS15100	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DALK_RS15105	COG0297	glycogen (starch) synthase activity
DALK_RS15110	COG0463	Glycosyl transferase, family 2
DALK_RS15115	COG3437	response regulator, receiver
DALK_RS15125	COG0745	RESPONSE REGULATOR receiver
DALK_RS15130	COG5002	protein histidine kinase activity
DALK_RS15145	COG2204	response regulator
DALK_RS15150	COG4206	TonB-dependent receptor
DALK_RS15165	COG0784	Response regulator, receiver
DALK_RS15165	COG4191	Histidine kinase
DALK_RS15170	COG3852	Histidine kinase
DALK_RS15185	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DALK_RS15190	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DALK_RS15195	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
DALK_RS15200	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DALK_RS15220	COG2204	response regulator
DALK_RS15225	COG0745	RESPONSE REGULATOR receiver
DALK_RS15245	COG2951	lytic endotransglycosylase activity
DALK_RS15255	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DALK_RS15260	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
DALK_RS15265	COG0217	transcriptional regulatory protein
DALK_RS15275	COG0438	transferase activity, transferring glycosyl groups
DALK_RS15295	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS15315	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DALK_RS15330	COG1733	regulation of RNA biosynthetic process
DALK_RS15340	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DALK_RS15355	COG0628	permease
DALK_RS15365	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
DALK_RS15370	COG0463	Glycosyl transferase, family 2
DALK_RS15400	COG0277	FAD linked oxidase domain protein
DALK_RS15405	COG1414	Transcriptional regulator
DALK_RS15410	COG0641	radical SAM
DALK_RS15415	COG3385	transposase activity
DALK_RS15425	COG3119	arylsulfatase activity
DALK_RS15440	COG2433	Pfam Transposase IS66
DALK_RS15450	COG2433	Pfam Transposase IS66
DALK_RS15475	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS15490	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DALK_RS15500	COG2217	Heavy metal translocating P-type atpase
DALK_RS15520	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DALK_RS15525	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
DALK_RS15530	COG0494	nUDIX hydrolase
DALK_RS15555	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DALK_RS15570	COG4822	anaerobic cobalamin biosynthetic process
DALK_RS15580	COG0428	transporter
DALK_RS15595	COG3034	peptidoglycan biosynthetic process
DALK_RS15610	COG0439	Biotin carboxylase
DALK_RS15630	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
DALK_RS15650	COG0004	ammonium transporteR
DALK_RS15670	COG1678	Uncharacterized ACR, COG1678
DALK_RS15710	COG1309	transcriptional regulator
DALK_RS15745	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DALK_RS15770	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DALK_RS15790	COG3635	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
DALK_RS15795	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DALK_RS15810	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
DALK_RS15820	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
DALK_RS15830	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
DALK_RS15835	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
DALK_RS15840	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
DALK_RS15855	COG0396	ATPase activity
DALK_RS15880	COG0358	DNA primase activity
DALK_RS15885	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
DALK_RS15895	COG0131	Imidazoleglycerol-phosphate dehydratase
DALK_RS15925	COG1309	transcriptional regulator
DALK_RS15975	COG0519	Catalyzes the synthesis of GMP from XMP
DALK_RS15980	COG0519	Catalyzes the synthesis of GMP from XMP
DALK_RS15990	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS16020	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS16055	COG1073	alpha beta
DALK_RS16060	COG3437	response regulator, receiver
DALK_RS16090	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS16110	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DALK_RS16130	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DALK_RS16140	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DALK_RS16145	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DALK_RS16150	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DALK_RS16155	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DALK_RS16160	COG0772	Belongs to the SEDS family
DALK_RS16165	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DALK_RS16170	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DALK_RS16175	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DALK_RS16180	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DALK_RS16185	COG0768	penicillin binding
DALK_RS16195	COG0275	rRNA processing
DALK_RS16200	COG2001	Belongs to the MraZ family
DALK_RS16235	COG0823	Involved in the tonB-independent uptake of proteins
DALK_RS16240	COG2885	chlorophyll binding
DALK_RS16250	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
DALK_RS16255	COG0632	four-way junction helicase activity
DALK_RS16260	COG2255	four-way junction helicase activity
DALK_RS16285	COG1053	succinate dehydrogenase
DALK_RS16295	COG0750	zinc metalloprotease
DALK_RS16300	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DALK_RS16310	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DALK_RS16315	COG0233	cytoplasmic translational termination
DALK_RS16320	COG0528	UMP kinase activity
DALK_RS16325	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DALK_RS16330	COG0052	Belongs to the universal ribosomal protein uS2 family
DALK_RS16335	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DALK_RS16345	COG1024	Enoyl-CoA hydratase
DALK_RS16350	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS16355	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS16390	COG1070	Carbohydrate kinase
DALK_RS16395	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DALK_RS16400	COG0277	FAD linked oxidase domain protein
DALK_RS16410	COG2204	response regulator
DALK_RS16415	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DALK_RS16425	COG0589	response to stress
DALK_RS16460	COG0183	Belongs to the thiolase family
DALK_RS16465	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS16470	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS16535	COG1674	ftsk spoiiie
DALK_RS16540	COG0720	synthase
DALK_RS16545	COG0484	heat shock protein binding
DALK_RS16560	COG0642	Histidine kinase
DALK_RS16575	COG1022	Amp-dependent synthetase and ligase
DALK_RS16595	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DALK_RS16605	COG0247	lactate metabolic process
DALK_RS16605	COG2181	nitrate reductase activity
DALK_RS16620	COG1024	Enoyl-CoA hydratase
DALK_RS16700	COG0142	geranyltranstransferase activity
DALK_RS16705	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DALK_RS16710	COG0484	heat shock protein binding
DALK_RS16740	COG1181	Belongs to the D-alanine--D-alanine ligase family
DALK_RS16785	COG1994	Peptidase M50
DALK_RS16790	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DALK_RS16795	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
DALK_RS16830	COG0681	Belongs to the peptidase S26 family
DALK_RS16835	COG0745	RESPONSE REGULATOR receiver
DALK_RS16875	COG0138	bifunctional purine biosynthesis protein purh
DALK_RS16890	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS16895	COG1960	acyl-CoA dehydrogenase activity
DALK_RS16900	COG1131	(ABC) transporter
DALK_RS16920	COG0683	leucine binding
DALK_RS16925	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS16950	COG0784	Response regulator, receiver
DALK_RS16950	COG2198	Histidine kinase
DALK_RS16950	COG2205	protein histidine kinase activity
DALK_RS16965	COG1063	alcohol dehydrogenase
DALK_RS16970	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DALK_RS16975	COG0047	phosphoribosylformylglycinamidine synthase activity
DALK_RS16995	COG0513	Belongs to the DEAD box helicase family
DALK_RS17010	COG2204	response regulator
DALK_RS17015	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS17040	COG0762	integral membrane protein
DALK_RS17060	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DALK_RS17065	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DALK_RS17070	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DALK_RS17075	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DALK_RS17080	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DALK_RS17080	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DALK_RS17090	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DALK_RS17090	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DALK_RS17095	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DALK_RS17100	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DALK_RS17110	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DALK_RS17120	COG2181	nitrate reductase activity
DALK_RS17120	COG0247	lactate metabolic process
DALK_RS17125	COG1960	acyl-CoA dehydrogenase activity
DALK_RS17130	COG0438	transferase activity, transferring glycosyl groups
DALK_RS17140	COG1702	phosphate starvation-inducible protein PhoH
DALK_RS17145	COG1480	7TM receptor with intracellular HD hydrolase
DALK_RS17150	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DALK_RS17155	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DALK_RS17160	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DALK_RS17160	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DALK_RS17165	COG0802	atpase or kinase
DALK_RS17175	COG0284	orotidine-5'-phosphate decarboxylase activity
DALK_RS17180	COG3012	SEC-C Motif Domain Protein
DALK_RS17205	COG1960	acyl-CoA dehydrogenase activity
DALK_RS17220	COG1012	belongs to the aldehyde dehydrogenase family
DALK_RS17220	COG2030	dehydratase
DALK_RS17250	COG0183	Belongs to the thiolase family
DALK_RS17255	COG1024	Enoyl-CoA hydratase
DALK_RS17260	COG1250	3-hydroxyacyl-CoA dehydrogenase
DALK_RS17270	COG1960	acyl-CoA dehydrogenase activity
DALK_RS17275	COG3246	L-lysine catabolic process to acetate
DALK_RS17290	COG1024	Enoyl-CoA hydratase
DALK_RS17300	COG3103	Sh3 type 3 domain protein
DALK_RS17300	COG0366	Alpha amylase catalytic
DALK_RS17335	COG0427	acetyl-CoA hydrolase
DALK_RS17345	COG1024	Enoyl-CoA hydratase
DALK_RS17360	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
DALK_RS17370	COG0436	Aminotransferase
DALK_RS17375	COG0564	pseudouridine synthase activity
DALK_RS17385	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
DALK_RS17390	COG0193	aminoacyl-tRNA hydrolase activity
DALK_RS17395	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DALK_RS17400	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DALK_RS17410	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DALK_RS17420	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DALK_RS17425	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
DALK_RS17435	COG1960	acyl-CoA dehydrogenase activity
DALK_RS17440	COG2070	2-Nitropropane dioxygenase
DALK_RS17445	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS17470	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS17475	COG1960	acyl-CoA dehydrogenase activity
DALK_RS17480	COG1960	acyl-CoA dehydrogenase activity
DALK_RS17520	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
DALK_RS17530	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DALK_RS17540	COG0784	Response regulator, receiver
DALK_RS17550	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DALK_RS17555	COG1088	dTDP-glucose 4,6-dehydratase activity
DALK_RS17560	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DALK_RS17565	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DALK_RS17570	COG0436	Aminotransferase
DALK_RS17575	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DALK_RS17580	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DALK_RS17590	COG3300	MHYT domain
DALK_RS17590	COG5001	Diguanylate cyclase
DALK_RS17595	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DALK_RS17615	COG1566	PFAM secretion protein HlyD family protein
DALK_RS17635	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DALK_RS17650	COG0247	lactate metabolic process
DALK_RS17655	COG1139	Iron-sulfur cluster binding protein
DALK_RS17700	COG1324	tolerance protein
DALK_RS17725	COG0542	response to heat
DALK_RS17730	COG1234	tRNA 3'-trailer cleavage
DALK_RS17735	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DALK_RS17735	COG1648	precorrin-2 dehydrogenase activity
DALK_RS17745	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DALK_RS17750	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
DALK_RS17755	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DALK_RS17770	COG0745	RESPONSE REGULATOR receiver
DALK_RS17780	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DALK_RS17785	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DALK_RS17790	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
DALK_RS17790	COG0517	IMP dehydrogenase activity
DALK_RS17810	COG0028	Belongs to the TPP enzyme family
DALK_RS17835	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DALK_RS17835	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DALK_RS17855	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
DALK_RS17860	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DALK_RS17885	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DALK_RS17925	COG0714	Associated with various cellular activities
DALK_RS17950	COG0505	Belongs to the CarA family
DALK_RS17955	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DALK_RS17960	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DALK_RS18000	COG1024	Enoyl-CoA hydratase
DALK_RS18005	COG1250	3-hydroxyacyl-CoA dehydrogenase
DALK_RS18025	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DALK_RS18105	COG1881	PFAM PEBP family protein
DALK_RS18125	COG1592	Rubrerythrin
DALK_RS18130	COG0028	Belongs to the TPP enzyme family
DALK_RS18135	COG4771	TonB-dependent receptor
DALK_RS18140	COG4771	TonB-dependent receptor
DALK_RS18160	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
DALK_RS18165	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DALK_RS18180	COG0811	peptide transport
DALK_RS18185	COG0811	peptide transport
DALK_RS18190	COG0848	biopolymer transport protein
DALK_RS18205	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DALK_RS18210	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
DALK_RS18220	COG1239	Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX
DALK_RS18230	COG0842	Transport permease protein
DALK_RS18340	COG4373	Mu-like prophage FluMu protein gp28
DALK_RS18360	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DALK_RS18370	COG3023	N-Acetylmuramoyl-L-alanine amidase
DALK_RS18400	COG1151	hydroxylamine reductase activity
DALK_RS18410	COG3005	denitrification pathway
DALK_RS18440	COG2842	Transposition protein
DALK_RS18445	COG2801	Transposase and inactivated derivatives
DALK_RS18465	COG2932	Transcriptional regulator
DALK_RS18485	COG1012	belongs to the aldehyde dehydrogenase family
DALK_RS18515	COG0666	response to abiotic stimulus
DALK_RS18535	COG2815	serine threonine protein kinase
DALK_RS18535	COG0515	serine threonine protein kinase
DALK_RS18550	COG0848	biopolymer transport protein
DALK_RS18595	COG5002	protein histidine kinase activity
DALK_RS18600	COG0745	RESPONSE REGULATOR receiver
DALK_RS18630	COG0443	Heat shock 70 kDa protein
DALK_RS18635	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DALK_RS18640	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DALK_RS18645	COG4536	flavin adenine dinucleotide binding
DALK_RS18650	COG0183	Belongs to the thiolase family
DALK_RS18655	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
DALK_RS18710	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DALK_RS18715	COG1418	mRNA catabolic process
DALK_RS18730	COG0355	proton-transporting ATP synthase activity, rotational mechanism
DALK_RS18735	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DALK_RS18740	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DALK_RS18745	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DALK_RS18750	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DALK_RS18755	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DALK_RS18760	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DALK_RS18770	COG0772	Belongs to the SEDS family
DALK_RS18775	COG0768	penicillin binding
DALK_RS18790	COG1077	Cell shape determining protein MreB Mrl
DALK_RS18795	COG0557	exoribonuclease II activity
DALK_RS18800	COG2759	Belongs to the formate--tetrahydrofolate ligase family
DALK_RS18810	COG1584	GPR1 FUN34 yaaH family protein
DALK_RS18830	COG4149	molybdate abc transporter
DALK_RS18835	COG0725	ABC transporter, periplasmic molybdate-binding protein
DALK_RS18855	COG3956	TIGRFAM MazG family protein
DALK_RS18860	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DALK_RS18900	COG1024	Enoyl-CoA hydratase
DALK_RS18900	COG1250	3-hydroxyacyl-CoA dehydrogenase
DALK_RS18905	COG0183	Belongs to the thiolase family
DALK_RS18915	COG2433	Pfam Transposase IS66
DALK_RS18935	COG1846	Transcriptional regulator
DALK_RS18970	COG0411	ABC transporter
DALK_RS19000	COG0701	Predicted permease
DALK_RS19005	COG0640	Transcriptional regulator
DALK_RS19015	COG0811	peptide transport
DALK_RS19020	COG0811	peptide transport
DALK_RS19025	COG0071	Belongs to the small heat shock protein (HSP20) family
DALK_RS19115	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DALK_RS19125	COG1519	Transferase
DALK_RS19140	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DALK_RS19145	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DALK_RS19155	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS19160	COG0702	epimerase
DALK_RS19200	COG1475	DNA binding
DALK_RS19205	COG1192	Involved in chromosome partitioning
DALK_RS19210	COG0497	DNA recombination
DALK_RS19240	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS19255	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DALK_RS19255	COG4106	trans-aconitate 2-methyltransferase activity
DALK_RS19260	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DALK_RS19275	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DALK_RS19295	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DALK_RS19335	COG2433	Pfam Transposase IS66
DALK_RS19350	COG1132	(ABC) transporter
DALK_RS19355	COG1132	(ABC) transporter
DALK_RS19365	COG0330	HflC and HflK could
DALK_RS19375	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS19385	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS19390	COG3706	GGDEF domain
DALK_RS19395	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
DALK_RS19400	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
DALK_RS19410	COG1309	transcriptional regulator
DALK_RS19435	COG2815	serine threonine protein kinase
DALK_RS19435	COG0515	serine threonine protein kinase
DALK_RS19445	COG0010	Belongs to the arginase family
DALK_RS19450	COG1945	arginine decarboxylase activity
DALK_RS19465	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DALK_RS19475	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DALK_RS19480	COG0778	Nitroreductase
DALK_RS19495	COG1960	acyl-CoA dehydrogenase activity
DALK_RS19510	COG0346	lactoylglutathione lyase activity
DALK_RS19515	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DALK_RS19525	COG0511	ligase activity, forming carbon-carbon bonds
DALK_RS19525	COG5016	pyruvate
DALK_RS19530	COG0045	succinate-CoA ligase (ADP-forming) activity
DALK_RS19535	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DALK_RS19560	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DALK_RS19575	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DALK_RS19585	COG1024	Enoyl-CoA hydratase
DALK_RS19590	COG1309	transcriptional regulator
DALK_RS19600	COG0516	GMP reductase activity
DALK_RS19600	COG0517	IMP dehydrogenase activity
DALK_RS19645	COG1619	proteins homologs of microcin C7 resistance protein MccF
DALK_RS19650	COG0708	Exodeoxyribonuclease III
DALK_RS19655	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DALK_RS19690	COG0419	ATPase involved in DNA repair
DALK_RS19695	COG0420	3'-5' exonuclease activity
DALK_RS19715	COG0215	cysteine-tRNA ligase activity
DALK_RS19720	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DALK_RS19730	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
DALK_RS19735	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
DALK_RS19750	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DALK_RS19765	COG0778	Nitroreductase
DALK_RS19780	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS19785	COG1960	acyl-CoA dehydrogenase activity
DALK_RS19815	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DALK_RS19825	COG1592	Rubrerythrin
DALK_RS19830	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS19885	COG1509	lysine 2,3-aminomutase activity
DALK_RS19895	COG0535	radical SAM domain protein
DALK_RS19900	COG0113	porphobilinogen synthase activity
DALK_RS19905	COG0535	radical SAM domain protein
DALK_RS19940	COG1846	Transcriptional regulator
DALK_RS19960	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DALK_RS19965	COG1250	3-hydroxyacyl-CoA dehydrogenase
DALK_RS19975	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DALK_RS19980	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
DALK_RS19990	COG0789	Transcriptional regulator
DALK_RS19995	COG4231	catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates
DALK_RS20000	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DALK_RS20055	COG1643	Atp-dependent helicase
DALK_RS20060	COG0741	lytic transglycosylase activity
DALK_RS20090	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
DALK_RS20100	COG0511	ligase activity, forming carbon-carbon bonds
DALK_RS20105	COG0583	DNA-binding transcription factor activity
DALK_RS20130	COG0058	SHG alpha-glucan phosphorylase activity
DALK_RS20150	COG0793	Belongs to the peptidase S41A family
DALK_RS20155	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DALK_RS20175	COG0183	Belongs to the thiolase family
DALK_RS20185	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS20190	COG1960	acyl-CoA dehydrogenase activity
DALK_RS20195	COG1960	acyl-CoA dehydrogenase activity
DALK_RS20215	COG0784	Response regulator, receiver
DALK_RS20215	COG5002	protein histidine kinase activity
DALK_RS20215	COG2205	protein histidine kinase activity
DALK_RS20225	COG0745	RESPONSE REGULATOR receiver
DALK_RS20240	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
DALK_RS20245	COG2201	protein-glutamate methylesterase activity
DALK_RS20260	COG0840	transmembrane signaling receptor activity
DALK_RS20265	COG0835	chemotaxis
DALK_RS20270	COG0643	Histidine kinase
DALK_RS20270	COG2198	Histidine kinase
DALK_RS20275	COG0612	Peptidase, M16
DALK_RS20310	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
DALK_RS20315	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DALK_RS20325	COG2848	UPF0210 protein
DALK_RS20340	COG1012	belongs to the aldehyde dehydrogenase family
DALK_RS20360	COG0559	Belongs to the binding-protein-dependent transport system permease family
DALK_RS20385	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DALK_RS20390	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DALK_RS20405	COG1355	regulation of microtubule-based process
DALK_RS20425	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS20435	COG1350	The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine
DALK_RS20540	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DALK_RS20550	COG1472	Belongs to the glycosyl hydrolase 3 family
DALK_RS20555	COG0778	Nitroreductase
DALK_RS20565	COG0003	Pfam Anion-transporting ATPase
DALK_RS20575	COG1639	'signal transduction protein
DALK_RS20600	COG1763	Mo-molybdopterin cofactor biosynthetic process
DALK_RS20605	COG1388	LysM domain
DALK_RS20605	COG0860	N-Acetylmuramoyl-L-alanine amidase
DALK_RS20610	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DALK_RS20630	COG0232	Belongs to the dGTPase family. Type 2 subfamily
DALK_RS20670	COG0181	hydroxymethylbilane synthase activity
DALK_RS20680	COG1058	Belongs to the CinA family
DALK_RS20680	COG1546	Belongs to the CinA family
DALK_RS20750	COG0745	RESPONSE REGULATOR receiver
DALK_RS20755	COG2204	response regulator
DALK_RS20775	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DALK_RS20780	COG1012	belongs to the aldehyde dehydrogenase family
DALK_RS20805	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DALK_RS20825	COG0247	lactate metabolic process
DALK_RS20825	COG2181	nitrate reductase activity
DALK_RS20850	COG0183	Belongs to the thiolase family
DALK_RS20885	COG1309	transcriptional regulator
DALK_RS20905	COG1333	cytochrome c biogenesis protein
DALK_RS20915	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DALK_RS20920	COG1120	ATPase activity
DALK_RS20925	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DALK_RS20935	COG4206	TonB-dependent receptor
DALK_RS20945	COG4206	TonB-dependent receptor
DALK_RS20955	COG1122	ATPase activity
DALK_RS21005	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS21010	COG1309	transcriptional regulator
DALK_RS21050	COG0725	ABC transporter, periplasmic molybdate-binding protein
DALK_RS21055	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
DALK_RS21060	COG3842	ATPase activity
DALK_RS21070	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS21105	COG1024	Enoyl-CoA hydratase
DALK_RS21110	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DALK_RS21115	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DALK_RS21120	COG1160	GTP binding
DALK_RS21125	COG1355	regulation of microtubule-based process
DALK_RS21145	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DALK_RS21155	COG2119	membrane
DALK_RS21160	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DALK_RS21165	COG3769	mannosylglycerate metabolic process
DALK_RS21170	COG1215	transferase activity, transferring glycosyl groups
DALK_RS21185	COG0187	DNA topoisomerase II activity
DALK_RS21195	COG1530	ribonuclease E activity
DALK_RS21200	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DALK_RS21205	COG0211	Belongs to the bacterial ribosomal protein bL27 family
DALK_RS21210	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DALK_RS21215	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DALK_RS21220	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
DALK_RS21245	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DALK_RS21250	COG1129	ABC transporter
DALK_RS21265	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DALK_RS21270	COG0799	negative regulation of ribosome biogenesis
DALK_RS21285	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DALK_RS21290	COG1847	R3H domain protein
DALK_RS21295	COG0706	membrane insertase activity
DALK_RS21300	COG0594	ribonuclease P activity
DALK_RS21305	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DALK_RS21315	COG0315	cyclic pyranopterin monophosphate synthase activity
DALK_RS21320	COG0746	molybdenum cofactor guanylyltransferase activity
DALK_RS21330	COG2920	part of a sulfur-relay system
DALK_RS21335	COG0432	Pfam Uncharacterised protein family UPF0047
DALK_RS21340	COG1522	sequence-specific DNA binding
DALK_RS21345	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DALK_RS21355	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DALK_RS21375	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS21385	COG0720	synthase
DALK_RS21390	COG0602	queuosine metabolic process
DALK_RS21395	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
DALK_RS21405	COG0604	alcohol dehydrogenase
DALK_RS21405	COG3321	synthase
DALK_RS21405	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS21440	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS21475	COG1703	isobutyryl-CoA mutase activity
DALK_RS21480	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS21480	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS21485	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DALK_RS21495	COG1960	acyl-CoA dehydrogenase activity
DALK_RS21505	COG3174	membrane
DALK_RS21520	COG3177	Filamentation induced by cAMP protein fic
DALK_RS21570	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DALK_RS21575	COG0805	protein transport
DALK_RS21655	COG0058	SHG alpha-glucan phosphorylase activity
DALK_RS21665	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS21670	COG2207	Transcriptional regulator
DALK_RS21680	COG0243	molybdopterin cofactor binding
DALK_RS21715	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DALK_RS21770	COG0488	(ABC) transporter
DALK_RS21855	COG0459	protein refolding
DALK_RS21860	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DALK_RS21870	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
DALK_RS21880	COG2315	Protein conserved in bacteria
DALK_RS21910	COG0243	molybdopterin cofactor binding
DALK_RS21990	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
DALK_RS21995	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
DALK_RS22005	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DALK_RS22010	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DALK_RS22040	COG1522	sequence-specific DNA binding
DALK_RS22070	COG0017	Asparaginyl-tRNA synthetase
DALK_RS22085	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DALK_RS22090	COG1993	acr, cog1993
DALK_RS22115	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DALK_RS22140	COG1797	cobyrinic acid a,c-diamide synthase activity
DALK_RS22150	COG2221	Nitrite and sulphite reductase 4Fe-4S
DALK_RS22155	COG2221	Nitrite and sulphite reductase 4Fe-4S
DALK_RS22200	COG0356	it plays a direct role in the translocation of protons across the membrane
DALK_RS22205	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DALK_RS22210	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DALK_RS22265	COG3852	Histidine kinase
DALK_RS22275	COG4771	TonB-dependent receptor
DALK_RS22330	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
DALK_RS22330	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
DALK_RS22345	COG0535	radical SAM domain protein
DALK_RS22350	COG0456	acetyltransferase
DALK_RS22355	COG0681	Belongs to the peptidase S26 family
DALK_RS22390	COG1960	acyl-CoA dehydrogenase activity
DALK_RS22395	COG1921	L-seryl-tRNASec selenium transferase activity
DALK_RS22405	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
DALK_RS22435	COG4658	electron transport chain
DALK_RS22445	COG4660	Part of a membrane complex involved in electron transport
DALK_RS22450	COG4657	Part of a membrane complex involved in electron transport
DALK_RS22455	COG0543	2 iron, 2 sulfur cluster binding
DALK_RS22460	COG0493	'glutamate synthase
DALK_RS22520	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DALK_RS22530	COG2204	response regulator
DALK_RS22535	COG0697	spore germination
DALK_RS22550	COG3695	enzyme binding
DALK_RS22570	COG0427	acetyl-CoA hydrolase
DALK_RS22585	COG0411	ABC transporter
DALK_RS22595	COG0559	Belongs to the binding-protein-dependent transport system permease family
DALK_RS22600	COG0683	leucine binding
DALK_RS22605	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DALK_RS22615	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DALK_RS22630	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DALK_RS22635	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DALK_RS22640	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DALK_RS22690	COG1573	uracil-dna glycosylase
DALK_RS22695	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DALK_RS22715	COG2226	methyltransferase
DALK_RS22735	COG2207	Transcriptional regulator
DALK_RS22780	COG1773	rubredoxin
DALK_RS22780	COG1592	Rubrerythrin
DALK_RS22825	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DALK_RS22830	COG1127	ABC transporter
DALK_RS22870	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DALK_RS22875	COG1943	Transposase
DALK_RS22895	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DALK_RS22905	COG3681	Belongs to the UPF0597 family
DALK_RS22940	COG2192	nodulation
DALK_RS22965	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS22990	COG1194	a g-specific adenine glycosylase
DALK_RS23005	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DALK_RS23040	COG1078	dGTPase activity
DALK_RS23055	COG1454	alcohol dehydrogenase
DALK_RS23060	COG0357	Ribosomal RNA small subunit methyltransferase G
DALK_RS23080	COG2198	Histidine kinase
DALK_RS23080	COG0643	Histidine kinase
DALK_RS23090	COG0840	transmembrane signaling receptor activity
DALK_RS23095	COG0835	chemotaxis
DALK_RS23100	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DALK_RS23105	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
DALK_RS23110	COG2201	protein-glutamate methylesterase activity
DALK_RS23120	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DALK_RS23130	COG0154	amidase activity
DALK_RS23135	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DALK_RS23145	COG0018	arginyl-trna synthetase
DALK_RS23160	COG2226	methyltransferase
DALK_RS23195	COG0519	Catalyzes the synthesis of GMP from XMP
DALK_RS23195	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DALK_RS23205	COG2086	electron transfer activity
DALK_RS23210	COG1295	ribonuclease BN
DALK_RS23245	COG2433	Pfam Transposase IS66
DALK_RS23260	COG2433	Pfam Transposase IS66
DALK_RS23270	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS23280	COG3604	Transcriptional regulator
DALK_RS23295	COG1070	Carbohydrate kinase
DALK_RS23590	COG0305	Participates in initiation and elongation during chromosome replication
DALK_RS23665	COG0629	single-stranded DNA binding
DALK_RS23765	COG1918	ferrous iron import across plasma membrane
DALK_RS23765	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
DALK_RS23780	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
DALK_RS23785	COG2006	4fe-4S ferredoxin, iron-sulfur binding domain protein
DALK_RS23820	COG0793	Belongs to the peptidase S41A family
DALK_RS23835	COG2884	Cell division ATP-binding protein ftsE
DALK_RS23840	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DALK_RS23845	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DALK_RS23850	COG1309	transcriptional regulator
DALK_RS23855	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS23860	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DALK_RS23865	COG0792	nuclease activity
DALK_RS23870	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DALK_RS23875	COG0335	large ribosomal subunit rRNA binding
DALK_RS23880	COG4752	Belongs to the RNA methyltransferase TrmD family
DALK_RS23885	COG0336	Belongs to the RNA methyltransferase TrmD family
DALK_RS23890	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DALK_RS23895	COG1837	Belongs to the UPF0109 family
DALK_RS23900	COG0228	four-way junction DNA binding
DALK_RS23905	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DALK_RS23910	COG0820	rRNA (adenine-C2-)-methyltransferase activity
DALK_RS23915	COG0482	sulfurtransferase activity
DALK_RS23920	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DALK_RS23955	COG0251	oxidation-reduction process
DALK_RS23980	COG2201	protein-glutamate methylesterase activity
DALK_RS23985	COG2198	Histidine kinase
DALK_RS23985	COG0784	Response regulator, receiver
DALK_RS23985	COG0643	Histidine kinase
DALK_RS23995	COG0835	chemotaxis
DALK_RS24005	COG0835	chemotaxis
DALK_RS24095	COG1943	Transposase
DALK_RS24115	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DALK_RS24120	COG1024	Enoyl-CoA hydratase
DALK_RS24130	COG1910	domain protein
DALK_RS24135	COG0303	'Molybdopterin
DALK_RS24145	COG1979	alcohol dehydrogenase
DALK_RS24170	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DALK_RS24170	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DALK_RS24175	COG0300	oxidoreductase activity
DALK_RS24185	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS24185	COG1902	pentaerythritol trinitrate reductase activity
DALK_RS24195	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS24205	COG0745	RESPONSE REGULATOR receiver
DALK_RS24235	COG0697	spore germination
DALK_RS24240	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DALK_RS24245	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS24245	COG1902	pentaerythritol trinitrate reductase activity
DALK_RS24275	COG2239	Acts as a magnesium transporter
DALK_RS24280	COG0346	lactoylglutathione lyase activity
DALK_RS24290	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DALK_RS24305	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DALK_RS24330	COG0701	Predicted permease
DALK_RS24335	COG0640	Transcriptional regulator
DALK_RS24345	COG0779	Required for maturation of 30S ribosomal subunits
DALK_RS24350	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DALK_RS24350	COG0195	Participates in both transcription termination and antitermination
DALK_RS24355	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DALK_RS24355	COG3064	Membrane
DALK_RS24365	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DALK_RS24370	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DALK_RS24375	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DALK_RS24380	COG1185	polyribonucleotide nucleotidyltransferase activity
DALK_RS24390	COG0756	dUTP diphosphatase activity
DALK_RS24395	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DALK_RS24405	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
DALK_RS24440	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DALK_RS24445	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DALK_RS24450	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DALK_RS24455	COG0076	glutamate decarboxylase activity
DALK_RS24460	COG1794	racemase activity, acting on amino acids and derivatives
DALK_RS24485	COG0411	ABC transporter
DALK_RS24495	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS24510	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DALK_RS24615	COG0419	ATPase involved in DNA repair
DALK_RS24650	COG3385	transposase activity
DALK_RS24665	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
DALK_RS24695	COG1872	DUF167
DALK_RS24705	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DALK_RS24740	COG1459	type II secretion system
DALK_RS24750	COG4969	Belongs to the N-Me-Phe pilin family
DALK_RS24800	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DALK_RS24820	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DALK_RS24830	COG1309	transcriptional regulator
DALK_RS24850	COG0247	lactate metabolic process
DALK_RS24880	COG1902	pentaerythritol trinitrate reductase activity
DALK_RS24880	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS24885	COG3385	transposase activity
DALK_RS24890	COG1960	acyl-CoA dehydrogenase activity
DALK_RS24915	COG0183	Belongs to the thiolase family
DALK_RS24920	COG1028	Short-chain dehydrogenase reductase Sdr
DALK_RS24930	COG3829	transcription factor binding
DALK_RS24930	COG3290	protein histidine kinase activity
DALK_RS24935	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS24940	COG0577	efflux transmembrane transporter activity
DALK_RS24940	COG1136	(ABC) transporter
DALK_RS24945	COG1136	(ABC) transporter
DALK_RS24945	COG0577	efflux transmembrane transporter activity
DALK_RS24950	COG1566	PFAM secretion protein HlyD family protein
DALK_RS24965	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DALK_RS24975	COG1882	Formate acetyltransferase
DALK_RS24995	COG1882	Formate acetyltransferase
DALK_RS25025	COG4221	oxidoreductase activity
DALK_RS25030	COG2226	methyltransferase
DALK_RS25035	COG1794	racemase activity, acting on amino acids and derivatives
DALK_RS25040	COG0237	dephospho-CoA kinase activity
DALK_RS25055	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS25060	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS25065	COG1309	transcriptional regulator
DALK_RS25075	COG1106	Psort location Cytoplasmic, score
DALK_RS25080	COG3655	Transcriptional regulator
DALK_RS25090	COG3437	response regulator, receiver
DALK_RS25185	COG0410	ABC transporter
DALK_RS25205	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
DALK_RS25210	COG5012	cobalamin binding
DALK_RS25225	COG5012	cobalamin binding
DALK_RS25230	COG2188	Transcriptional regulator
DALK_RS25275	COG1006	Multisubunit Na H antiporter MnhC subunit
DALK_RS25280	COG0651	ATP synthesis coupled electron transport
DALK_RS25285	COG0651	ATP synthesis coupled electron transport
DALK_RS25295	COG0651	ATP synthesis coupled electron transport
DALK_RS25320	COG0582	viral genome integration into host DNA
DALK_RS25365	COG1857	crispr-associated protein
DALK_RS25375	COG1518	maintenance of DNA repeat elements
DALK_RS25390	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DALK_RS25400	COG0183	Belongs to the thiolase family
DALK_RS25425	COG1056	cytidyltransferase-related domain
DALK_RS25425	COG1051	belongs to the nudix hydrolase family
DALK_RS25435	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DALK_RS25435	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DALK_RS25440	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DALK_RS25455	COG0247	lactate metabolic process
DALK_RS25465	COG0045	succinate-CoA ligase (ADP-forming) activity
DALK_RS25465	COG1042	CoA-binding domain protein
DALK_RS25465	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DALK_RS25480	COG1534	Rna-binding protein
DALK_RS25500	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DALK_RS25545	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
DALK_RS25580	COG1950	PFAM Membrane protein of
DALK_RS25590	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DALK_RS25600	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DALK_RS25615	COG4656	Part of a membrane complex involved in electron transport
DALK_RS25620	COG1012	belongs to the aldehyde dehydrogenase family
DALK_RS25635	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
DALK_RS25645	COG4820	ethanolamine utilization protein (EutJ)
DALK_RS25735	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DALK_RS25750	COG0427	acetyl-CoA hydrolase
DALK_RS25760	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
DALK_RS25765	COG0402	S-adenosylhomocysteine deaminase activity
DALK_RS25770	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
DALK_RS25825	COG1592	Rubrerythrin
DALK_RS25825	COG1773	rubredoxin
DALK_RS25830	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DALK_RS25835	COG2208	phosphoserine phosphatase activity
DALK_RS25855	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
DALK_RS25870	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DALK_RS25870	COG3153	acetyltransferase
DALK_RS25885	COG0084	hydrolase, TatD family'
DALK_RS25900	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DALK_RS25930	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DALK_RS25955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DALK_RS25960	COG0842	Transport permease protein
DALK_RS25960	COG1129	ABC transporter
DALK_RS25965	COG0842	Transport permease protein
DALK_RS25965	COG1129	ABC transporter
DALK_RS25970	COG0842	Transport permease protein
DALK_RS25985	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS26025	COG0446	pyridine nucleotide-disulphide oxidoreductase
DALK_RS26030	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
DALK_RS26040	COG2048	Heterodisulfide reductase, subunit B
DALK_RS26045	COG3349	Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'
DALK_RS26065	COG1403	HNH endonuclease
DALK_RS26085	COG2268	Band 7 protein
DALK_RS26095	COG0730	response to heat
DALK_RS26110	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DALK_RS26115	COG1120	ATPase activity
DALK_RS26140	COG3385	transposase activity
DALK_RS26160	COG1034	ATP synthesis coupled electron transport
DALK_RS26170	COG1773	rubredoxin
DALK_RS26190	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
DALK_RS26195	COG0004	ammonium transporteR
DALK_RS26200	COG0347	Belongs to the P(II) protein family
DALK_RS26230	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DALK_RS26235	COG0442	prolyl-tRNA aminoacylation
DALK_RS26290	COG0463	Glycosyl transferase, family 2
DALK_RS26305	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DALK_RS26310	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DALK_RS26335	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS26370	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DALK_RS26380	COG1192	Involved in chromosome partitioning
DALK_RS26405	COG1620	l-lactate permease
DALK_RS26415	COG1032	radical SAM domain protein
DALK_RS26425	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DALK_RS26430	COG1450	Type ii and iii secretion system protein
DALK_RS26440	COG3409	Peptidoglycan-binding domain 1 protein
DALK_RS26440	COG3267	Type II secretory pathway component ExeA
DALK_RS26465	COG3156	type II secretion system protein K
DALK_RS26490	COG1459	type II secretion system
DALK_RS26555	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DALK_RS26575	COG1234	tRNA 3'-trailer cleavage
DALK_RS26585	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DALK_RS26585	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
DALK_RS26600	COG1960	acyl-CoA dehydrogenase activity
DALK_RS26605	COG2086	electron transfer activity
DALK_RS26680	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DALK_RS26735	COG2814	Major facilitator Superfamily
DALK_RS26765	COG0205	6-phosphofructokinase activity
DALK_RS26770	COG2890	protein-(glutamine-N5) methyltransferase activity
DALK_RS26775	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DALK_RS26780	COG0254	rRNA binding
DALK_RS26790	COG2267	carboxylic ester hydrolase activity
DALK_RS26800	COG0574	Belongs to the PEP-utilizing enzyme family
DALK_RS26800	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DALK_RS26805	COG1104	cysteine desulfurase activity
DALK_RS26810	COG3620	sequence-specific DNA binding
DALK_RS26810	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
DALK_RS26810	COG0617	tRNA 3'-terminal CCA addition
DALK_RS26815	COG1994	Peptidase M50
DALK_RS26820	COG0180	Tryptophanyl-tRNA synthetase
DALK_RS26825	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
DALK_RS26840	COG0582	viral genome integration into host DNA
DALK_RS26925	COG2433	Pfam Transposase IS66
DALK_RS26955	COG1250	3-hydroxyacyl-CoA dehydrogenase
DALK_RS26955	COG1024	Enoyl-CoA hydratase
DALK_RS27020	COG1830	Aldolase
DALK_RS27040	COG3848	Pyruvate phosphate dikinase
DALK_RS27040	COG0574	Belongs to the PEP-utilizing enzyme family
DALK_RS27080	COG1960	acyl-CoA dehydrogenase activity
DALK_RS27085	COG0789	Transcriptional regulator
DALK_RS27095	COG3191	aminopeptidase activity
DALK_RS27105	COG0606	chelatase, subunit chli
DALK_RS27110	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
DALK_RS27135	COG0737	Belongs to the 5'-nucleotidase family
DALK_RS27165	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
DALK_RS27175	COG3228	Belongs to the MtfA family
DALK_RS27180	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DALK_RS27200	COG1216	Glycosyl transferase, family 2
DALK_RS27240	COG0589	response to stress
DALK_RS27265	COG3852	Histidine kinase
DALK_RS27275	COG2815	serine threonine protein kinase
DALK_RS27275	COG0515	serine threonine protein kinase
DALK_RS27290	COG1475	DNA binding
DALK_RS27300	COG0784	Response regulator, receiver
DALK_RS27300	COG4191	Histidine kinase
DALK_RS27320	COG4191	Histidine kinase
DALK_RS27330	COG5002	protein histidine kinase activity
DALK_RS27330	COG0784	Response regulator, receiver
DALK_RS27330	COG2205	protein histidine kinase activity
DALK_RS27345	COG2197	response regulator
DALK_RS27385	COG1309	transcriptional regulator
DALK_RS27415	COG1309	transcriptional regulator
DALK_RS27425	COG0444	Belongs to the ABC transporter superfamily
DALK_RS27445	COG0840	transmembrane signaling receptor activity
DALK_RS27450	COG0681	Belongs to the peptidase S26 family
DALK_RS27460	COG1714	RDD family
DALK_RS27470	COG1749	Flagellar hook protein flgE
DALK_RS27475	COG4191	Histidine kinase
DALK_RS27495	COG1215	transferase activity, transferring glycosyl groups
DALK_RS27510	COG3852	Histidine kinase
DALK_RS27515	COG0784	Response regulator, receiver
DALK_RS27515	COG4191	Histidine kinase
DALK_RS27535	COG0840	transmembrane signaling receptor activity
DALK_RS27545	COG0655	NAD(P)H dehydrogenase (quinone) activity
DALK_RS27550	COG0840	transmembrane signaling receptor activity
DALK_RS27560	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DALK_RS27570	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DALK_RS27660	COG1169	isochorismate synthase
DALK_RS27665	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS27670	COG0596	Alpha beta hydrolase
DALK_RS27700	COG2186	Transcriptional regulator
DALK_RS27720	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
DALK_RS27740	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
DALK_RS27750	COG0784	Response regulator, receiver
DALK_RS27750	COG2205	protein histidine kinase activity
DALK_RS27755	COG1846	Transcriptional regulator
DALK_RS27775	COG5002	protein histidine kinase activity
DALK_RS27800	COG2204	response regulator
DALK_RS27840	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DALK_RS27855	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DALK_RS27895	COG3706	GGDEF domain
DALK_RS27905	COG4191	Histidine kinase
DALK_RS27905	COG0784	Response regulator, receiver
DALK_RS27920	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
DALK_RS27960	COG0745	RESPONSE REGULATOR receiver
DALK_RS27975	COG3646	Phage regulatory protein
DALK_RS27990	COG0705	Rhomboid family
DALK_RS27995	COG1309	transcriptional regulator
DALK_RS28000	COG2770	Histidine kinase
DALK_RS28000	COG2208	phosphoserine phosphatase activity
DALK_RS28010	COG4191	Histidine kinase
DALK_RS28030	COG2770	Histidine kinase
DALK_RS28030	COG2208	phosphoserine phosphatase activity
DALK_RS28035	COG4585	Histidine kinase
DALK_RS28060	COG1396	sequence-specific DNA binding
DALK_RS28085	COG0515	serine threonine protein kinase
DALK_RS28085	COG2815	serine threonine protein kinase
DALK_RS28115	COG2208	phosphoserine phosphatase activity
DALK_RS28155	COG2205	protein histidine kinase activity
DALK_RS28155	COG2202	Pas domain
DALK_RS28160	COG5012	cobalamin binding
DALK_RS28165	COG0617	tRNA 3'-terminal CCA addition
DALK_RS28175	COG0515	serine threonine protein kinase
DALK_RS28175	COG2815	serine threonine protein kinase
DALK_RS28200	COG0363	glucosamine-6-phosphate deaminase activity
DALK_RS28210	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
DALK_RS28245	COG4589	Belongs to the CDS family
DALK_RS28285	COG0318	PFAM AMP-dependent synthetase and ligase
DALK_RS28295	COG3604	Transcriptional regulator
DALK_RS28300	COG4251	negative regulation of phosphorylation
DALK_RS28320	COG1943	Transposase
DALK_RS28340	COG2208	phosphoserine phosphatase activity
DALK_RS28370	COG4383	Mu-like prophage protein gp29
DALK_RS28380	COG0515	serine threonine protein kinase
DALK_RS28380	COG2815	serine threonine protein kinase
DALK_RS28385	COG2204	response regulator
DALK_RS28390	COG3852	Histidine kinase
DALK_RS28425	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DALK_RS28470	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
DALK_RS28475	COG2030	dehydratase
DALK_RS28485	COG2205	protein histidine kinase activity
DALK_RS28485	COG2198	Histidine kinase
DALK_RS28485	COG0784	Response regulator, receiver
DALK_RS28490	COG0840	transmembrane signaling receptor activity
DALK_RS28525	COG2205	protein histidine kinase activity
DALK_RS28545	COG2208	phosphoserine phosphatase activity
DALK_RS28545	COG2770	Histidine kinase
DALK_RS28560	COG1309	transcriptional regulator
DALK_RS28565	COG0646	methionine synthase
DALK_RS28565	COG1410	methionine synthase
DALK_RS28585	COG1442	glycosyl transferase family 8
DALK_RS28585	COG1216	Glycosyl transferase, family 2
DALK_RS28590	COG2264	protein methyltransferase activity
DALK_RS28625	COG1595	DNA-templated transcription, initiation
DALK_RS28630	COG1309	transcriptional regulator
DALK_RS28645	COG2205	protein histidine kinase activity
DALK_RS28645	COG0784	Response regulator, receiver
DALK_RS28645	COG5002	protein histidine kinase activity
DALK_RS28655	COG5002	protein histidine kinase activity
DALK_RS28655	COG2205	protein histidine kinase activity
DALK_RS28655	COG0784	Response regulator, receiver
DALK_RS28660	COG1309	transcriptional regulator
DALK_RS28675	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DALK_RS28710	COG2861	carbohydrate metabolic process
DALK_RS28725	COG0840	transmembrane signaling receptor activity
DALK_RS28775	COG1960	acyl-CoA dehydrogenase activity
DALK_RS28800	COG0840	transmembrane signaling receptor activity
DALK_RS28825	COG3852	Histidine kinase
DALK_RS28835	COG2204	response regulator
DALK_RS28845	COG2226	methyltransferase
DALK_RS28850	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
DALK_RS28860	COG1309	transcriptional regulator
DALK_RS28885	COG1882	Formate acetyltransferase
DALK_RS28905	COG1196	nuclear chromosome segregation
DALK_RS28935	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
DALK_RS28950	COG4239	(ABC) transporter, permease
DALK_RS28970	COG4968	Prepilin-type N-terminal cleavage methylation domain
DALK_RS29000	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DALK_RS29005	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DALK_RS29010	COG3264	Mechanosensitive ion channel
DALK_RS29010	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
DALK_RS29030	COG0863	Belongs to the N(4) N(6)-methyltransferase family
DALK_RS29040	COG0840	transmembrane signaling receptor activity
DALK_RS29085	COG2165	general secretion pathway protein
DALK_RS29100	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DALK_RS29125	COG0401	homolog of Blt101
DALK_RS29140	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DALK_RS29160	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
DALK_RS29250	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DALK_RS29265	COG0840	transmembrane signaling receptor activity
DALK_RS29290	COG0653	protein targeting
DALK_RS29305	COG0653	protein targeting