locus-tag class description DDI_RS00005 PF00005 ABC transporter DDI_RS00010 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS00015 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS00020 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS00025 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS00030 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS00045 PF00872 Transposase, Mutator family DDI_RS00070 PF02954 Bacterial regulatory protein, Fis family DDI_RS00075 PF01207 Dihydrouridine synthase (Dus) DDI_RS00085 PF00474 Sodium:solute symporter family DDI_RS00090 PF06196 Protein of unknown function (DUF997) DDI_RS00095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDI_RS00095 PF02785 Biotin carboxylase C-terminal domain DDI_RS00095 PF00289 Biotin carboxylase, N-terminal domain DDI_RS00100 PF00364 Biotin-requiring enzyme DDI_RS00105 PF01220 Dehydroquinase class II DDI_RS00110 PF01794 Ferric reductase like transmembrane component DDI_RS00115 PF00174 Oxidoreductase molybdopterin binding domain DDI_RS00120 PF08240 Alcohol dehydrogenase GroES-like domain DDI_RS00120 PF00107 Zinc-binding dehydrogenase DDI_RS00125 PF00563 EAL domain DDI_RS00125 PF17157 Gammaproteobacterial periplasmic sensor domain DDI_RS00125 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS00135 PF04085 rod shape-determining protein MreC DDI_RS00140 PF04093 rod shape-determining protein MreD DDI_RS00145 PF02545 Maf-like protein DDI_RS00150 PF00575 S1 RNA binding domain DDI_RS00150 PF10150 Ribonuclease E/G family DDI_RS00155 PF13502 AsmA-like C-terminal region DDI_RS00155 PF13116 Protein of unknown function DDI_RS00160 PF01523 Putative modulator of DNA gyrase DDI_RS00165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS00165 PF03466 LysR substrate binding domain DDI_RS00170 PF07869 Protein of unknown function (DUF1656) DDI_RS00175 PF13533 Biotin-lipoyl like DDI_RS00180 PF04632 Fusaric acid resistance protein family DDI_RS00190 PF01810 LysE type translocator DDI_RS00195 PF04751 Protein of unknown function (DUF615) DDI_RS00200 PF01523 Putative modulator of DNA gyrase DDI_RS00205 PF14760 Rnk N-terminus DDI_RS00205 PF01272 Transcription elongation factor, GreA/GreB, C-term DDI_RS00210 PF00381 PTS HPr component phosphorylation site DDI_RS00215 PF03668 P-loop ATPase protein family DDI_RS00220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDI_RS00225 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DDI_RS00230 PF04552 Sigma-54, DNA binding domain DDI_RS00230 PF00309 Sigma-54 factor, Activator interacting domain (AID) DDI_RS00230 PF04963 Sigma-54 factor, core binding domain DDI_RS00235 PF12399 Branched-chain amino acid ATP-binding cassette transporter DDI_RS00235 PF00005 ABC transporter DDI_RS00240 PF03968 OstA-like protein DDI_RS00245 PF06835 Lipopolysaccharide-assembly, LptC-related DDI_RS00255 PF00571 CBS domain DDI_RS00255 PF01380 SIS domain DDI_RS00260 PF01699 Sodium/calcium exchanger protein DDI_RS00265 PF00005 ABC transporter DDI_RS00270 PF02405 Permease MlaE DDI_RS00275 PF02470 MlaD protein DDI_RS00280 PF05494 MlaC protein DDI_RS00285 PF13466 STAS domain DDI_RS00290 PF01722 BolA-like protein DDI_RS00295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDI_RS00300 PF13180 PDZ domain DDI_RS00305 PF00595 PDZ domain DDI_RS00305 PF13180 PDZ domain DDI_RS00310 PF06295 Protein of unknown function (DUF1043) DDI_RS00315 PF03969 AFG1-like ATPase DDI_RS00325 PF00572 Ribosomal protein L13 DDI_RS00330 PF00380 Ribosomal protein S9/S16 DDI_RS00335 PF00043 Glutathione S-transferase, C-terminal domain DDI_RS00335 PF02798 Glutathione S-transferase, N-terminal domain DDI_RS00340 PF04386 Stringent starvation protein B DDI_RS00350 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS00350 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DDI_RS00355 PF04898 Glutamate synthase central domain DDI_RS00355 PF01493 GXGXG motif DDI_RS00355 PF01645 Conserved region in glutamate synthase DDI_RS00355 PF00310 Glutamine amidotransferases class-II DDI_RS00360 PF16199 Radical_SAM C-terminal domain DDI_RS00360 PF04055 Radical SAM superfamily DDI_RS00365 PF18415 Histidine kinase receptor ArcB trans-membrane domain DDI_RS00365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS00365 PF01627 Hpt domain DDI_RS00365 PF00072 Response regulator receiver domain DDI_RS00365 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS00365 PF00989 PAS fold DDI_RS00375 PF00912 Transglycosylase DDI_RS00385 PF04972 BON domain DDI_RS00390 PF13580 SIS domain DDI_RS00395 PF02021 Uncharacterised protein family UPF0102 DDI_RS00400 PF04348 LppC putative lipoprotein DDI_RS00405 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DDI_RS00415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DDI_RS00420 PF03738 Glutathionylspermidine synthase preATP-grasp DDI_RS00425 PF06693 Protein of unknown function (DUF1190) DDI_RS00430 PF02321 Outer membrane efflux protein DDI_RS00435 PF00293 NUDIX domain DDI_RS00440 PF06853 Protein of unknown function (DUF1249) DDI_RS00445 PF00149 Calcineurin-like phosphoesterase DDI_RS00450 PF05728 Uncharacterised protein family (UPF0227) DDI_RS00455 PF00204 DNA gyrase B DDI_RS00455 PF00986 DNA gyrase B subunit, carboxyl terminus DDI_RS00455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS00455 PF01751 Toprim domain DDI_RS00465 PF02525 Flavodoxin-like fold DDI_RS00470 PF00521 DNA gyrase/topoisomerase IV, subunit A DDI_RS00470 PF03989 DNA gyrase C-terminal domain, beta-propeller DDI_RS00475 PF01553 Acyltransferase DDI_RS00480 PF07732 Multicopper oxidase DDI_RS00480 PF07731 Multicopper oxidase DDI_RS00485 PF00248 Aldo/keto reductase family DDI_RS00490 PF00465 Iron-containing alcohol dehydrogenase DDI_RS00495 PF06719 AraC-type transcriptional regulator N-terminus DDI_RS00495 PF12833 Helix-turn-helix domain DDI_RS00500 PF09335 SNARE associated Golgi protein DDI_RS00505 PF01053 Cys/Met metabolism PLP-dependent enzyme DDI_RS00510 PF01618 MotA/TolQ/ExbB proton channel family DDI_RS00515 PF02472 Biopolymer transport protein ExbD/TolR DDI_RS00520 PF05336 L-rhamnose mutarotase DDI_RS00525 PF06379 L-rhamnose-proton symport protein (RhaT) DDI_RS00530 PF06134 L-rhamnose isomerase (RhaA) DDI_RS00535 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDI_RS00535 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDI_RS00540 PF02311 AraC-like ligand binding domain DDI_RS00540 PF12833 Helix-turn-helix domain DDI_RS00545 PF00465 Iron-containing alcohol dehydrogenase DDI_RS00550 PF00596 Class II Aldolase and Adducin N-terminal domain DDI_RS00555 PF13407 Periplasmic binding protein domain DDI_RS00555 PF00356 Bacterial regulatory proteins, lacI family DDI_RS00560 PF00251 Glycosyl hydrolases family 32 N-terminal domain DDI_RS00560 PF08244 Glycosyl hydrolases family 32 C terminal DDI_RS00565 PF00367 phosphotransferase system, EIIB DDI_RS00565 PF02378 Phosphotransferase system, EIIC DDI_RS00570 PF11471 Maltoporin periplasmic N-terminal extension DDI_RS00570 PF02264 LamB porin DDI_RS00575 PF00294 pfkB family carbohydrate kinase DDI_RS00585 PF02203 Tar ligand binding domain homologue DDI_RS00585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS00585 PF00672 HAMP domain DDI_RS00600 PF13597 Anaerobic ribonucleoside-triphosphate reductase DDI_RS00600 PF03477 ATP cone domain DDI_RS00605 PF02310 B12 binding domain DDI_RS00605 PF02574 Homocysteine S-methyltransferase DDI_RS00605 PF02607 B12 binding domain DDI_RS00605 PF02965 Vitamin B12 dependent methionine synthase, activation domain DDI_RS00605 PF00809 Pterin binding enzyme DDI_RS00610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS00615 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS00620 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS00620 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS00625 PF00005 ABC transporter DDI_RS00625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS00630 PF05638 Type VI secretion system effector, Hcp DDI_RS00660 PF14403 Circularly permuted ATP-grasp type 2 DDI_RS00665 PF01593 Flavin containing amine oxidoreductase DDI_RS00670 PF01425 Amidase DDI_RS00685 PF01042 Endoribonuclease L-PSP DDI_RS00690 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain DDI_RS00690 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain DDI_RS00695 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDI_RS00695 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDI_RS00700 PF04074 YhcH/YjgK/YiaL DDI_RS00705 PF00232 Glycosyl hydrolase family 1 DDI_RS00710 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDI_RS00710 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDI_RS00715 PF06877 Regulator of ribonuclease activity B DDI_RS00730 PF00583 Acetyltransferase (GNAT) family DDI_RS00735 PF00583 Acetyltransferase (GNAT) family DDI_RS00740 PF00561 alpha/beta hydrolase fold DDI_RS00750 PF02863 Arginine repressor, C-terminal domain DDI_RS00750 PF01316 Arginine repressor, DNA binding domain DDI_RS00755 PF03606 C4-dicarboxylate anaerobic carrier DDI_RS00760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDI_RS00760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDI_RS00765 PF00696 Amino acid kinase family DDI_RS00775 PF10458 Valyl tRNA synthetase tRNA binding arm DDI_RS00775 PF00133 tRNA synthetases class I (I, L, M and V) DDI_RS00775 PF08264 Anticodon-binding domain of tRNA DDI_RS00780 PF04364 DNA polymerase III chi subunit, HolC DDI_RS00785 PF00883 Cytosol aminopeptidase family, catalytic domain DDI_RS00785 PF02789 Cytosol aminopeptidase family, N-terminal domain DDI_RS00790 PF03739 Lipopolysaccharide export system permease LptF/LptG DDI_RS00795 PF03739 Lipopolysaccharide export system permease LptF/LptG DDI_RS00805 PF13356 Arm DNA-binding domain DDI_RS00805 PF00589 Phage integrase family DDI_RS00810 PF13286 Phosphohydrolase-associated domain DDI_RS00810 PF01966 HD domain DDI_RS00825 PF13693 Winged helix-turn-helix DNA-binding DDI_RS00945 PF01810 LysE type translocator DDI_RS00950 PF03852 DNA mismatch endonuclease Vsr DDI_RS00955 PF18284 DNA methylase N-terminal domain DDI_RS00955 PF00145 C-5 cytosine-specific DNA methylase DDI_RS00965 PF07690 Major Facilitator Superfamily DDI_RS00975 PF08220 DeoR-like helix-turn-helix domain DDI_RS00975 PF00455 DeoR C terminal sensor domain DDI_RS00980 PF00456 Transketolase, thiamine diphosphate binding domain DDI_RS00985 PF02779 Transketolase, pyrimidine binding domain DDI_RS00985 PF02780 Transketolase, C-terminal domain DDI_RS00995 PF13407 Periplasmic binding protein domain DDI_RS01005 PF00005 ABC transporter DDI_RS01010 PF02653 Branched-chain amino acid transport system / permease component DDI_RS01015 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDI_RS01015 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDI_RS01020 PF01338 Bacillus thuringiensis toxin DDI_RS01035 PF01338 Bacillus thuringiensis toxin DDI_RS01040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS01045 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS01050 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS01050 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS01055 PF00005 ABC transporter DDI_RS01055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS01060 PF00005 ABC transporter DDI_RS01060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS01075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS01075 PF03466 LysR substrate binding domain DDI_RS01080 PF00291 Pyridoxal-phosphate dependent enzyme DDI_RS01105 PF01037 Lrp/AsnC ligand binding domain DDI_RS01110 PF01817 Chorismate mutase type II DDI_RS01120 PF01966 HD domain DDI_RS01125 PF01614 Bacterial transcriptional regulator DDI_RS01125 PF09339 IclR helix-turn-helix domain DDI_RS01130 PF00672 HAMP domain DDI_RS01130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS01130 PF02203 Tar ligand binding domain homologue DDI_RS01135 PF02311 AraC-like ligand binding domain DDI_RS01135 PF12833 Helix-turn-helix domain DDI_RS01140 PF12833 Helix-turn-helix domain DDI_RS01140 PF02311 AraC-like ligand binding domain DDI_RS01155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS01155 PF00005 ABC transporter DDI_RS01160 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS01160 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS01165 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS01170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS01175 PF07274 Protein of unknown function (DUF1440) DDI_RS01185 PF01494 FAD binding domain DDI_RS01190 PF01494 FAD binding domain DDI_RS01195 PF05195 Aminopeptidase P, N-terminal domain DDI_RS01195 PF00557 Metallopeptidase family M24 DDI_RS01200 PF03695 Uncharacterised protein family (UPF0149) DDI_RS01205 PF05164 Cell division protein ZapA DDI_RS01215 PF01812 5-formyltetrahydrofolate cyclo-ligase family DDI_RS01220 PF01381 Helix-turn-helix DDI_RS01220 PF13521 AAA domain DDI_RS01225 PF18073 Rubredoxin metal binding domain DDI_RS01230 PF18429 Domain of unknown function (DUF5609) DDI_RS01235 PF10144 Bacterial virulence factor haemolysin DDI_RS01240 PF13847 Methyltransferase domain DDI_RS01245 PF03144 Elongation factor Tu domain 2 DDI_RS01245 PF00009 Elongation factor Tu GTP binding domain DDI_RS01245 PF16658 Class II release factor RF3, C-terminal domain DDI_RS01250 PF04972 BON domain DDI_RS01260 PF01026 TatD related DNase DDI_RS01270 PF00106 short chain dehydrogenase DDI_RS01275 PF02203 Tar ligand binding domain homologue DDI_RS01275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS01275 PF00672 HAMP domain DDI_RS01280 PF01546 Peptidase family M20/M25/M40 DDI_RS01280 PF07687 Peptidase dimerisation domain DDI_RS01290 PF00005 ABC transporter DDI_RS01300 PF01032 FecCD transport family DDI_RS01305 PF10417 C-terminal domain of 1-Cys peroxiredoxin DDI_RS01305 PF00578 AhpC/TSA family DDI_RS01310 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS01310 PF13192 Thioredoxin domain DDI_RS01325 PF00576 HIUase/Transthyretin family DDI_RS01335 PF03466 LysR substrate binding domain DDI_RS01335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS01340 PF00355 Rieske [2Fe-2S] domain DDI_RS01345 PF00111 2Fe-2S iron-sulfur cluster binding domain DDI_RS01350 PF01494 FAD binding domain DDI_RS01355 PF00392 Bacterial regulatory proteins, gntR family DDI_RS01355 PF07729 FCD domain DDI_RS01365 PF01425 Amidase DDI_RS01375 PF00083 Sugar (and other) transporter DDI_RS01380 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS01385 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS01390 PF01547 Bacterial extracellular solute-binding protein DDI_RS01395 PF00583 Acetyltransferase (GNAT) family DDI_RS01400 PF00005 ABC transporter DDI_RS01400 PF17912 MalK OB fold domain DDI_RS01405 PF00480 ROK family DDI_RS01405 PF01047 MarR family DDI_RS01410 PF01869 BadF/BadG/BcrA/BcrD ATPase family DDI_RS01420 PF00403 Heavy-metal-associated domain DDI_RS01425 PF13411 MerR HTH family regulatory protein DDI_RS01430 PF00356 Bacterial regulatory proteins, lacI family DDI_RS01440 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDI_RS01440 PF13378 Enolase C-terminal domain-like DDI_RS01445 PF02397 Bacterial sugar transferase DDI_RS01455 PF02563 Polysaccharide biosynthesis/export protein DDI_RS01460 PF02706 Chain length determinant protein DDI_RS01460 PF13807 G-rich domain on putative tyrosine kinase DDI_RS01460 PF13614 AAA domain DDI_RS01480 PF13439 Glycosyltransferase Family 4 DDI_RS01480 PF00534 Glycosyl transferases group 1 DDI_RS01485 PF00534 Glycosyl transferases group 1 DDI_RS01485 PF13439 Glycosyltransferase Family 4 DDI_RS01500 PF00132 Bacterial transferase hexapeptide (six repeats) DDI_RS01530 PF11412 Disulphide bond corrector protein DsbC DDI_RS01530 PF02683 Cytochrome C biogenesis protein transmembrane region DDI_RS01535 PF03091 CutA1 divalent ion tolerance protein DDI_RS01540 PF03605 Anaerobic c4-dicarboxylate membrane transporter DDI_RS01545 PF00206 Lyase DDI_RS01545 PF10415 Fumarase C C-terminus DDI_RS01550 PF04186 FxsA cytoplasmic membrane protein DDI_RS01555 PF00166 Chaperonin 10 Kd subunit DDI_RS01560 PF00118 TCP-1/cpn60 chaperonin family DDI_RS01565 PF04345 Chorismate lyase DDI_RS01570 PF01040 UbiA prenyltransferase family DDI_RS01575 PF01553 Acyltransferase DDI_RS01580 PF01219 Prokaryotic diacylglycerol kinase DDI_RS01585 PF01726 LexA DNA binding domain DDI_RS01585 PF00717 Peptidase S24-like DDI_RS01590 PF01475 Ferric uptake regulator family DDI_RS01595 PF02678 Pirin DDI_RS01595 PF17954 Quercetinase C-terminal cupin domain DDI_RS01600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS01600 PF03466 LysR substrate binding domain DDI_RS01605 PF13409 Glutathione S-transferase, N-terminal domain DDI_RS01610 PF07681 DoxX DDI_RS01620 PF07332 Putative Actinobacterial Holin-X, holin superfamily III DDI_RS01625 PF05957 Bacterial protein of unknown function (DUF883) DDI_RS01630 PF13721 SecD export protein N-terminal TM region DDI_RS01635 PF09335 SNARE associated Golgi protein DDI_RS01640 PF07729 FCD domain DDI_RS01640 PF00392 Bacterial regulatory proteins, gntR family DDI_RS01645 PF07690 Major Facilitator Superfamily DDI_RS01660 PF02614 Glucuronate isomerase DDI_RS01670 PF08125 Mannitol dehydrogenase C-terminal domain DDI_RS01670 PF01232 Mannitol dehydrogenase Rossmann domain DDI_RS01675 PF08666 SAF domain DDI_RS01675 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DDI_RS01680 PF10688 Bacterial inner membrane protein DDI_RS01685 PF03741 Integral membrane protein TerC family DDI_RS01690 PF05175 Methyltransferase small domain DDI_RS01700 PF00544 Pectate lyase DDI_RS01705 PF00196 Bacterial regulatory proteins, luxR family DDI_RS01705 PF00072 Response regulator receiver domain DDI_RS01710 PF07730 Histidine kinase DDI_RS01710 PF05231 MASE1 DDI_RS01710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS01715 PF07690 Major Facilitator Superfamily DDI_RS01720 PF07690 Major Facilitator Superfamily DDI_RS01725 PF07813 LTXXQ motif family protein DDI_RS01730 PF02424 ApbE family DDI_RS01735 PF00171 Aldehyde dehydrogenase family DDI_RS01740 PF14537 Cytochrome c3 DDI_RS01740 PF00890 FAD binding domain DDI_RS01745 PF02424 ApbE family DDI_RS01750 PF00440 Bacterial regulatory proteins, tetR family DDI_RS01750 PF08361 MAATS-type transcriptional repressor, C-terminal region DDI_RS01755 PF00106 short chain dehydrogenase DDI_RS01770 PF02661 Fic/DOC family DDI_RS01800 PF06892 Phage regulatory protein CII (CP76) DDI_RS01825 PF01258 Prokaryotic dksA/traR C4-type zinc finger DDI_RS01830 PF02086 D12 class N6 adenine-specific DNA methyltransferase DDI_RS01835 PF00145 C-5 cytosine-specific DNA methylase DDI_RS01845 PF05840 Bacteriophage replication gene A protein (GPA) DDI_RS01950 PF07484 Phage Tail Collar Domain DDI_RS01960 PF04984 Phage tail sheath protein subtilisin-like domain DDI_RS01960 PF17482 Phage tail sheath C-terminal domain DDI_RS01995 PF04606 Ogr/Delta-like zinc finger DDI_RS02015 PF00140 Sigma-70 factor, region 1.2 DDI_RS02015 PF03979 Sigma-70 factor, region 1.1 DDI_RS02015 PF04542 Sigma-70 region 2 DDI_RS02015 PF04545 Sigma-70, region 4 DDI_RS02015 PF04546 Sigma-70, non-essential region DDI_RS02015 PF04539 Sigma-70 region 3 DDI_RS02020 PF08278 DNA primase DnaG DnaB-binding DDI_RS02020 PF08275 DNA primase catalytic core, N-terminal domain DDI_RS02020 PF01807 CHC2 zinc finger DDI_RS02020 PF10410 DnaB-helicase binding domain of primase DDI_RS02025 PF01165 Ribosomal protein S21 DDI_RS02030 PF00814 Glycoprotease family DDI_RS02035 PF01316 Arginine repressor, DNA binding domain DDI_RS02035 PF02863 Arginine repressor, C-terminal domain DDI_RS02040 PF00056 lactate/malate dehydrogenase, NAD binding domain DDI_RS02040 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DDI_RS02045 PF13693 Winged helix-turn-helix DNA-binding DDI_RS02060 PF00348 Polyprenyl synthetase DDI_RS02065 PF00829 Ribosomal prokaryotic L21 protein DDI_RS02070 PF01016 Ribosomal L27 protein DDI_RS02075 PF00892 EamA-like transporter family DDI_RS02080 PF01018 GTP1/OBG DDI_RS02080 PF01926 50S ribosome-binding GTPase DDI_RS02085 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DDI_RS02090 PF03449 Transcription elongation factor, N-terminal DDI_RS02090 PF01272 Transcription elongation factor, GreA/GreB, C-term DDI_RS02095 PF01985 CRS1 / YhbY (CRM) domain DDI_RS02100 PF01728 FtsJ-like methyltransferase DDI_RS02105 PF17862 AAA+ lid domain DDI_RS02105 PF00004 ATPase family associated with various cellular activities (AAA) DDI_RS02105 PF01434 Peptidase family M41 DDI_RS02105 PF06480 FtsH Extracellular DDI_RS02110 PF00809 Pterin binding enzyme DDI_RS02115 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDI_RS02115 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDI_RS02115 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDI_RS02115 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDI_RS02120 PF03840 Preprotein translocase SecG subunit DDI_RS02135 PF02576 RimP N-terminal domain DDI_RS02135 PF17384 RimP C-terminal SH3 domain DDI_RS02140 PF13184 NusA-like KH domain DDI_RS02140 PF08529 NusA N-terminal domain DDI_RS02140 PF00575 S1 RNA binding domain DDI_RS02145 PF04760 Translation initiation factor IF-2, N-terminal region DDI_RS02145 PF03144 Elongation factor Tu domain 2 DDI_RS02145 PF11987 Translation-initiation factor 2 DDI_RS02145 PF08364 Bacterial translation initiation factor IF-2 associated region DDI_RS02145 PF00009 Elongation factor Tu GTP binding domain DDI_RS02150 PF02033 Ribosome-binding factor A DDI_RS02155 PF01509 TruB family pseudouridylate synthase (N terminal domain) DDI_RS02155 PF16198 tRNA pseudouridylate synthase B C-terminal domain DDI_RS02155 PF09157 Pseudouridine synthase II TruB, C-terminal DDI_RS02160 PF00312 Ribosomal protein S15 DDI_RS02165 PF00013 KH domain DDI_RS02165 PF00575 S1 RNA binding domain DDI_RS02165 PF01138 3' exoribonuclease family, domain 1 DDI_RS02165 PF03725 3' exoribonuclease family, domain 2 DDI_RS02165 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DDI_RS02170 PF07719 Tetratricopeptide repeat DDI_RS02170 PF13181 Tetratricopeptide repeat DDI_RS02175 PF00270 DEAD/DEAH box helicase DDI_RS02175 PF03880 DbpA RNA binding domain DDI_RS02175 PF12343 Cold shock protein DEAD box A DDI_RS02175 PF00271 Helicase conserved C-terminal domain DDI_RS02180 PF00296 Luciferase-like monooxygenase DDI_RS02185 PF01136 Peptidase family U32 DDI_RS02190 PF01136 Peptidase family U32 DDI_RS02195 PF02036 SCP-2 sterol transfer family DDI_RS02200 PF13508 Acetyltransferase (GNAT) domain DDI_RS02205 PF01541 GIY-YIG catalytic domain DDI_RS02210 PF01791 DeoC/LacD family aldolase DDI_RS02215 PF02885 Glycosyl transferase family, helical bundle domain DDI_RS02215 PF00591 Glycosyl transferase family, a/b domain DDI_RS02215 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DDI_RS02220 PF01676 Metalloenzyme superfamily DDI_RS02225 PF01048 Phosphorylase superfamily DDI_RS02240 PF01168 Alanine racemase, N-terminal domain DDI_RS02245 PF00156 Phosphoribosyl transferase domain DDI_RS02250 PF00291 Pyridoxal-phosphate dependent enzyme DDI_RS02265 PF02384 N-6 DNA Methylase DDI_RS02270 PF18766 SWI2/SNF2 ATPase DDI_RS02270 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DDI_RS02270 PF12008 Type I restriction and modification enzyme - subunit R C terminal DDI_RS02275 PF00583 Acetyltransferase (GNAT) family DDI_RS02280 PF03603 DNA polymerase III psi subunit DDI_RS02285 PF05175 Methyltransferase small domain DDI_RS02285 PF08468 Methyltransferase small domain N-terminal DDI_RS02290 PF00248 Aldo/keto reductase family DDI_RS02295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS02295 PF03466 LysR substrate binding domain DDI_RS02315 PF07256 Protein of unknown function (DUF1435) DDI_RS02320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS02320 PF03466 LysR substrate binding domain DDI_RS02325 PF03306 Alpha-acetolactate decarboxylase DDI_RS02330 PF00205 Thiamine pyrophosphate enzyme, central domain DDI_RS02330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDI_RS02330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDI_RS02335 PF01571 Aminomethyltransferase folate-binding domain DDI_RS02335 PF08669 Glycine cleavage T-protein C-terminal barrel domain DDI_RS02340 PF01597 Glycine cleavage H-protein DDI_RS02345 PF02347 Glycine cleavage system P-protein DDI_RS02355 PF03006 Haemolysin-III related DDI_RS02365 PF03937 Flavinator of succinate dehydrogenase DDI_RS02370 PF07254 Membrane-bound toxin component of toxin-antitoxin system DDI_RS02375 PF00258 Flavodoxin DDI_RS02380 PF07690 Major Facilitator Superfamily DDI_RS02380 PF00083 Sugar (and other) transporter DDI_RS02385 PF00589 Phage integrase family DDI_RS02385 PF02899 Phage integrase, N-terminal SAM-like domain DDI_RS02390 PF13098 Thioredoxin-like domain DDI_RS02390 PF10411 Disulfide bond isomerase protein N-terminus DDI_RS02395 PF01368 DHH family DDI_RS02395 PF02272 DHHA1 domain DDI_RS02395 PF17768 RecJ OB domain DDI_RS02405 PF01336 OB-fold nucleic acid binding domain DDI_RS02405 PF00152 tRNA synthetases class II (D, K and N) DDI_RS02425 PF00239 Resolvase, N terminal domain DDI_RS02425 PF02796 Helix-turn-helix domain of resolvase DDI_RS02470 PF13592 Winged helix-turn helix DDI_RS02470 PF13358 DDE superfamily endonuclease DDI_RS02490 PF01638 HxlR-like helix-turn-helix DDI_RS02495 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS02495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS02495 PF00672 HAMP domain DDI_RS02500 PF00486 Transcriptional regulatory protein, C terminal DDI_RS02500 PF00072 Response regulator receiver domain DDI_RS02505 PF02321 Outer membrane efflux protein DDI_RS02515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS02520 PF00873 AcrB/AcrD/AcrF family DDI_RS02530 PF02719 Polysaccharide biosynthesis protein DDI_RS02535 PF01370 NAD dependent epimerase/dehydratase family DDI_RS02540 PF02397 Bacterial sugar transferase DDI_RS02545 PF13416 Bacterial extracellular solute-binding protein DDI_RS02550 PF17912 MalK OB fold domain DDI_RS02550 PF00005 ABC transporter DDI_RS02555 PF00149 Calcineurin-like phosphoesterase DDI_RS02560 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS02565 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS02575 PF03279 Bacterial lipid A biosynthesis acyltransferase DDI_RS02580 PF00860 Permease family DDI_RS02585 PF00999 Sodium/hydrogen exchanger family DDI_RS02590 PF00474 Sodium:solute symporter family DDI_RS02595 PF04341 Protein of unknown function, DUF485 DDI_RS02600 PF16177 Acetyl-coenzyme A synthetase N-terminus DDI_RS02600 PF00501 AMP-binding enzyme DDI_RS02600 PF13193 AMP-binding enzyme C-terminal domain DDI_RS02620 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDI_RS02620 PF13378 Enolase C-terminal domain-like DDI_RS02625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS02630 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS02635 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS02635 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS02640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS02640 PF00005 ABC transporter DDI_RS02645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS02645 PF00005 ABC transporter DDI_RS02665 PF01232 Mannitol dehydrogenase Rossmann domain DDI_RS02665 PF08125 Mannitol dehydrogenase C-terminal domain DDI_RS02670 PF07690 Major Facilitator Superfamily DDI_RS02675 PF13533 Biotin-lipoyl like DDI_RS02680 PF01047 MarR family DDI_RS02685 PF00392 Bacterial regulatory proteins, gntR family DDI_RS02685 PF00155 Aminotransferase class I and II DDI_RS02695 PF03734 L,D-transpeptidase catalytic domain DDI_RS02695 PF17969 L,D-transpeptidase C-terminal domain DDI_RS02700 PF10371 Domain of unknown function DDI_RS02700 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DDI_RS02700 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DDI_RS02700 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DDI_RS02700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDI_RS02720 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DDI_RS02720 PF04616 Glycosyl hydrolases family 43 DDI_RS02730 PF06183 DinI-like family DDI_RS02750 PF01820 D-ala D-ala ligase N-terminus DDI_RS02750 PF07478 D-ala D-ala ligase C-terminus DDI_RS02760 PF00171 Aldehyde dehydrogenase family DDI_RS02765 PF00205 Thiamine pyrophosphate enzyme, central domain DDI_RS02765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDI_RS02765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDI_RS02770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDI_RS02770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDI_RS02775 PF13407 Periplasmic binding protein domain DDI_RS02780 PF00005 ABC transporter DDI_RS02785 PF02653 Branched-chain amino acid transport system / permease component DDI_RS02790 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDI_RS02790 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDI_RS02795 PF00294 pfkB family carbohydrate kinase DDI_RS02800 PF01261 Xylose isomerase-like TIM barrel DDI_RS02805 PF04962 KduI/IolB family DDI_RS02815 PF13406 Transglycosylase SLT domain DDI_RS02830 PF01554 MatE DDI_RS02860 PF13358 DDE superfamily endonuclease DDI_RS02860 PF13592 Winged helix-turn helix DDI_RS02895 PF13614 AAA domain DDI_RS02900 PF00589 Phage integrase family DDI_RS02900 PF13356 Arm DNA-binding domain DDI_RS02910 PF01668 SmpB protein DDI_RS02915 PF03364 Polyketide cyclase / dehydrase and lipid transport DDI_RS02920 PF03658 RnfH family Ubiquitin DDI_RS02925 PF04355 SmpA / OmlA family DDI_RS02930 PF02463 RecF/RecN/SMC N terminal domain DDI_RS02935 PF01513 ATP-NAD kinase DDI_RS02945 PF01025 GrpE DDI_RS02950 PF01566 Natural resistance-associated macrophage protein DDI_RS02955 PF00293 NUDIX domain DDI_RS02960 PF01515 Phosphate acetyl/butaryl transferase DDI_RS02960 PF03949 Malic enzyme, NAD binding domain DDI_RS02960 PF00390 Malic enzyme, N-terminal domain DDI_RS02965 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DDI_RS02970 PF01218 Coproporphyrinogen III oxidase DDI_RS02975 PF00583 Acetyltransferase (GNAT) family DDI_RS02980 PF06572 Protein of unknown function (DUF1131) DDI_RS02985 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase DDI_RS02990 PF13693 Winged helix-turn-helix DNA-binding DDI_RS03005 PF04261 Dyp-type peroxidase family DDI_RS03010 PF00291 Pyridoxal-phosphate dependent enzyme DDI_RS03015 PF00005 ABC transporter DDI_RS03015 PF02687 FtsX-like permease family DDI_RS03015 PF12704 MacB-like periplasmic core domain DDI_RS03020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS03025 PF00072 Response regulator receiver domain DDI_RS03025 PF00486 Transcriptional regulatory protein, C terminal DDI_RS03030 PF00672 HAMP domain DDI_RS03030 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS03030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS03030 PF16527 Two-component sensor protein CpxA, periplasmic domain DDI_RS03040 PF01638 HxlR-like helix-turn-helix DDI_RS03045 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDI_RS03050 PF00391 PEP-utilising enzyme, mobile domain DDI_RS03050 PF02896 PEP-utilising enzyme, TIM barrel domain DDI_RS03050 PF05524 PEP-utilising enzyme, N-terminal DDI_RS03055 PF00381 PTS HPr component phosphorylation site DDI_RS03065 PF00291 Pyridoxal-phosphate dependent enzyme DDI_RS03075 PF04354 ZipA, C-terminal FtsZ-binding domain DDI_RS03080 PF13520 Amino acid permease DDI_RS03085 PF04380 Membrane fusogenic activity DDI_RS03090 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DDI_RS03095 PF09313 Domain of unknown function (DUF1971) DDI_RS03095 PF03848 Tellurite resistance protein TehB DDI_RS03100 PF18113 Rubredoxin binding C-terminal domain DDI_RS03100 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS03105 PF00258 Flavodoxin DDI_RS03105 PF00753 Metallo-beta-lactamase superfamily DDI_RS03105 PF00301 Rubredoxin DDI_RS03110 PF01590 GAF domain DDI_RS03110 PF00158 Sigma-54 interaction domain DDI_RS03115 PF05681 Fumarate hydratase (Fumerase) DDI_RS03115 PF05683 Fumarase C-terminus DDI_RS03120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS03120 PF03466 LysR substrate binding domain DDI_RS03135 PF13532 2OG-Fe(II) oxygenase superfamily DDI_RS03140 PF14537 Cytochrome c3 DDI_RS03140 PF00890 FAD binding domain DDI_RS03145 PF04205 FMN-binding domain DDI_RS03145 PF00890 FAD binding domain DDI_RS03145 PF03358 NADPH-dependent FMN reductase DDI_RS03150 PF07690 Major Facilitator Superfamily DDI_RS03155 PF03916 Polysulphide reductase, NrfD DDI_RS03160 PF13247 4Fe-4S dicluster domain DDI_RS03175 PF03466 LysR substrate binding domain DDI_RS03175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS03180 PF00356 Bacterial regulatory proteins, lacI family DDI_RS03185 PF00753 Metallo-beta-lactamase superfamily DDI_RS03185 PF12706 Beta-lactamase superfamily domain DDI_RS03190 PF00005 ABC transporter DDI_RS03190 PF17912 MalK OB fold domain DDI_RS03195 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS03200 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS03205 PF01547 Bacterial extracellular solute-binding protein DDI_RS03210 PF07690 Major Facilitator Superfamily DDI_RS03215 PF00180 Isocitrate/isopropylmalate dehydrogenase DDI_RS03220 PF03466 LysR substrate binding domain DDI_RS03220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS03225 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term DDI_RS03225 PF14489 QueF-like protein DDI_RS03240 PF14686 Polysaccharide lyase family 4, domain II DDI_RS03240 PF14683 Polysaccharide lyase family 4, domain III DDI_RS03245 PF03350 Uncharacterized protein family, UPF0114 DDI_RS03250 PF00384 Molybdopterin oxidoreductase DDI_RS03250 PF01568 Molydopterin dinucleotide binding domain DDI_RS03270 PF00072 Response regulator receiver domain DDI_RS03270 PF00486 Transcriptional regulatory protein, C terminal DDI_RS03275 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS03275 PF00989 PAS fold DDI_RS03275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS03275 PF00672 HAMP domain DDI_RS03275 PF18698 Histidine kinase sensor domain DDI_RS03285 PF00873 AcrB/AcrD/AcrF family DDI_RS03295 PF01638 HxlR-like helix-turn-helix DDI_RS03305 PF12697 Alpha/beta hydrolase family DDI_RS03330 PF03330 Lytic transglycolase DDI_RS03335 PF00150 Cellulase (glycosyl hydrolase family 5) DDI_RS03335 PF14600 Cellulose-binding domain DDI_RS03360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDI_RS03370 PF00106 short chain dehydrogenase DDI_RS03380 PF08659 KR domain DDI_RS03380 PF00698 Acyl transferase domain DDI_RS03380 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS03380 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS03380 PF00550 Phosphopantetheine attachment site DDI_RS03380 PF14765 Polyketide synthase dehydratase DDI_RS03380 PF08240 Alcohol dehydrogenase GroES-like domain DDI_RS03380 PF16197 Ketoacyl-synthetase C-terminal extension DDI_RS03385 PF02371 Transposase IS116/IS110/IS902 family DDI_RS03385 PF01548 Transposase DDI_RS03400 PF01548 Transposase DDI_RS03400 PF02371 Transposase IS116/IS110/IS902 family DDI_RS03405 PF01845 CcdB protein DDI_RS03410 PF07362 Post-segregation antitoxin CcdA DDI_RS03430 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) DDI_RS03430 PF18766 SWI2/SNF2 ATPase DDI_RS03430 PF11867 Domain of unknown function (DUF3387) DDI_RS03455 PF01420 Type I restriction modification DNA specificity domain DDI_RS03460 PF12161 HsdM N-terminal domain DDI_RS03460 PF02384 N-6 DNA Methylase DDI_RS03475 PF13693 Winged helix-turn-helix DNA-binding DDI_RS03485 PF00589 Phage integrase family DDI_RS03485 PF13356 Arm DNA-binding domain DDI_RS03495 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain DDI_RS03495 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DDI_RS03495 PF01276 Orn/Lys/Arg decarboxylase, major domain DDI_RS03500 PF00324 Amino acid permease DDI_RS03505 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain DDI_RS03505 PF01464 Transglycosylase SLT domain DDI_RS03510 PF04362 Bacterial Fe(2+) trafficking DDI_RS03515 PF00730 HhH-GPD superfamily base excision DNA repair protein DDI_RS03515 PF00633 Helix-hairpin-helix motif DDI_RS03515 PF14815 NUDIX domain DDI_RS03520 PF02390 Putative methyltransferase DDI_RS03525 PF04320 Protein with unknown function (DUF469) DDI_RS03530 PF11101 Protein of unknown function (DUF2884) DDI_RS03535 PF03797 Autotransporter beta-domain DDI_RS03535 PF12951 Passenger-associated-transport-repeat DDI_RS03535 PF00082 Subtilase family DDI_RS03540 PF00248 Aldo/keto reductase family DDI_RS03545 PF06004 Bacterial protein of unknown function (DUF903) DDI_RS03550 PF03741 Integral membrane protein TerC family DDI_RS03555 PF02976 DNA mismatch repair enzyme MutH DDI_RS03565 PF00293 NUDIX domain DDI_RS03570 PF00391 PEP-utilising enzyme, mobile domain DDI_RS03570 PF02896 PEP-utilising enzyme, TIM barrel domain DDI_RS03570 PF05524 PEP-utilising enzyme, N-terminal DDI_RS03570 PF01590 GAF domain DDI_RS03575 PF01790 Prolipoprotein diacylglyceryl transferase DDI_RS03580 PF00303 Thymidylate synthase DDI_RS03585 PF07963 Prokaryotic N-terminal methylation motif DDI_RS03590 PF07963 Prokaryotic N-terminal methylation motif DDI_RS03605 PF05193 Peptidase M16 inactive domain DDI_RS03605 PF00675 Insulinase (Peptidase family M16) DDI_RS03605 PF16187 Middle or third domain of peptidase_M16 DDI_RS03610 PF00696 Amino acid kinase family DDI_RS03610 PF00583 Acetyltransferase (GNAT) family DDI_RS03615 PF11741 AMIN domain DDI_RS03615 PF01520 N-acetylmuramoyl-L-alanine amidase DDI_RS03630 PF06725 3D domain DDI_RS03630 PF03562 MltA specific insert domain DDI_RS03635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDI_RS03635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDI_RS03640 PF00583 Acetyltransferase (GNAT) family DDI_RS03645 PF00899 ThiF family DDI_RS03650 PF02657 Fe-S metabolism associated domain DDI_RS03655 PF00266 Aminotransferase class-V DDI_RS03660 PF03466 LysR substrate binding domain DDI_RS03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS03665 PF04241 Protein of unknown function (DUF423) DDI_RS03670 PF18125 RlmM ferredoxin-like domain DDI_RS03670 PF01728 FtsJ-like methyltransferase DDI_RS03675 PF01367 5'-3' exonuclease, C-terminal SAM fold DDI_RS03675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DDI_RS03680 PF11892 Domain of unknown function (DUF3412) DDI_RS03680 PF03641 Possible lysine decarboxylase DDI_RS03680 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases DDI_RS03685 PF07348 Syd protein (SUKH-2) DDI_RS03690 PF04287 tRNA pseudouridine synthase C DDI_RS03690 PF00849 RNA pseudouridylate synthase DDI_RS03695 PF00849 RNA pseudouridylate synthase DDI_RS03695 PF04287 tRNA pseudouridine synthase C DDI_RS03700 PF00258 Flavodoxin DDI_RS03705 PF11944 Protein of unknown function (DUF3461) DDI_RS03710 PF00132 Bacterial transferase hexapeptide (six repeats) DDI_RS03710 PF14602 Hexapeptide repeat of succinyl-transferase DDI_RS03710 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal DDI_RS03715 PF08335 GlnD PII-uridylyltransferase DDI_RS03715 PF01842 ACT domain DDI_RS03715 PF01909 Nucleotidyltransferase domain DDI_RS03715 PF01966 HD domain DDI_RS03720 PF00557 Metallopeptidase family M24 DDI_RS03725 PF00318 Ribosomal protein S2 DDI_RS03730 PF00889 Elongation factor TS DDI_RS03735 PF00696 Amino acid kinase family DDI_RS03740 PF01765 Ribosome recycling factor DDI_RS03745 PF13288 DXP reductoisomerase C-terminal domain DDI_RS03745 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DDI_RS03745 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DDI_RS03750 PF01255 Putative undecaprenyl diphosphate synthase DDI_RS03760 PF17820 PDZ domain DDI_RS03760 PF02163 Peptidase family M50 DDI_RS03765 PF07244 Surface antigen variable number repeat DDI_RS03765 PF01103 Surface antigen DDI_RS03770 PF03938 Outer membrane protein (OmpH-like) DDI_RS03775 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD DDI_RS03775 PF00132 Bacterial transferase hexapeptide (six repeats) DDI_RS03780 PF07977 FabA-like domain DDI_RS03785 PF00132 Bacterial transferase hexapeptide (six repeats) DDI_RS03785 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DDI_RS03790 PF02684 Lipid-A-disaccharide synthetase DDI_RS03795 PF01351 Ribonuclease HII DDI_RS03800 PF01336 OB-fold nucleic acid binding domain DDI_RS03800 PF02811 PHP domain DDI_RS03800 PF07733 Bacterial DNA polymerase III alpha NTPase domain DDI_RS03800 PF14579 Helix-hairpin-helix motif DDI_RS03800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DDI_RS03805 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DDI_RS03810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDI_RS03815 PF09179 TilS substrate binding domain DDI_RS03815 PF11734 TilS substrate C-terminal domain DDI_RS03815 PF01171 PP-loop family DDI_RS03820 PF07073 Modulator of Rho-dependent transcription termination (ROF) DDI_RS03825 PF06786 Uncharacterised protein family (UPF0253) DDI_RS03830 PF07152 YaeQ protein DDI_RS03835 PF04170 NlpE N-terminal domain DDI_RS03835 PF17185 NlpE C-terminal OB domain DDI_RS03840 PF01624 MutS domain I DDI_RS03840 PF05192 MutS domain III DDI_RS03840 PF05188 MutS domain II DDI_RS03840 PF05190 MutS family domain IV DDI_RS03840 PF00488 MutS domain V DDI_RS03860 PF01047 MarR family DDI_RS03880 PF01161 Phosphatidylethanolamine-binding protein DDI_RS03890 PF13302 Acetyltransferase (GNAT) domain DDI_RS03910 PF16861 Carbamoyltransferase C-terminus DDI_RS03910 PF02543 Carbamoyltransferase N-terminus DDI_RS03930 PF00899 ThiF family DDI_RS03930 PF00581 Rhodanese-like domain DDI_RS03945 PF13419 Haloacid dehalogenase-like hydrolase DDI_RS03960 PF03831 PhnA domain DDI_RS03960 PF08274 PhnA Zinc-Ribbon DDI_RS03965 PF17151 Periplasmic sensor domain DDI_RS03965 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS04030 PF01717 Cobalamin-independent synthase, Catalytic domain DDI_RS04035 PF17763 Glutaminase/Asparaginase C-terminal domain DDI_RS04035 PF00710 Asparaginase, N-terminal DDI_RS04040 PF01202 Shikimate kinase DDI_RS04045 PF06865 Pyrimidine/purine nucleoside phosphorylase DDI_RS04055 PF00672 HAMP domain DDI_RS04055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS04055 PF02743 Cache domain DDI_RS04060 PF04381 Putative exonuclease, RdgC DDI_RS04065 PF00480 ROK family DDI_RS04070 PF13476 AAA domain DDI_RS04075 PF12320 Type 5 capsule protein repressor C-terminal domain DDI_RS04075 PF00149 Calcineurin-like phosphoesterase DDI_RS04080 PF00486 Transcriptional regulatory protein, C terminal DDI_RS04080 PF00072 Response regulator receiver domain DDI_RS04085 PF00989 PAS fold DDI_RS04085 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS04085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS04085 PF11808 Phosphate regulon sensor protein PhoR DDI_RS04090 PF12849 PBP superfamily domain DDI_RS04095 PF01717 Cobalamin-independent synthase, Catalytic domain DDI_RS04100 PF05525 Branched-chain amino acid transport protein DDI_RS04105 PF00324 Amino acid permease DDI_RS04110 PF10417 C-terminal domain of 1-Cys peroxiredoxin DDI_RS04110 PF00578 AhpC/TSA family DDI_RS04115 PF04336 Acyl carrier protein phosphodiesterase DDI_RS04120 PF02547 Queuosine biosynthesis protein DDI_RS04125 PF01702 Queuine tRNA-ribosyltransferase DDI_RS04130 PF02699 Preprotein translocase subunit DDI_RS04135 PF13721 SecD export protein N-terminal TM region DDI_RS04135 PF02355 Protein export membrane protein DDI_RS04135 PF07549 SecD/SecF GG Motif DDI_RS04140 PF02355 Protein export membrane protein DDI_RS04140 PF07549 SecD/SecF GG Motif DDI_RS04145 PF11622 Protein of unknown function (DUF3251) DDI_RS04150 PF00690 Cation transporter/ATPase, N-terminus DDI_RS04150 PF00689 Cation transporting ATPase, C-terminus DDI_RS04155 PF03477 ATP cone domain DDI_RS04160 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDI_RS04160 PF01872 RibD C-terminal domain DDI_RS04165 PF00885 6,7-dimethyl-8-ribityllumazine synthase DDI_RS04170 PF01029 NusB family DDI_RS04175 PF00586 AIR synthase related protein, N-terminal domain DDI_RS04175 PF02769 AIR synthase related protein, C-terminal domain DDI_RS04180 PF04608 Phosphatidylglycerophosphatase A DDI_RS04185 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DDI_RS04185 PF02780 Transketolase, C-terminal domain DDI_RS04185 PF02779 Transketolase, pyrimidine binding domain DDI_RS04190 PF00348 Polyprenyl synthetase DDI_RS04195 PF02609 Exonuclease VII small subunit DDI_RS04200 PF02568 Thiamine biosynthesis protein (ThiI) DDI_RS04200 PF02926 THUMP domain DDI_RS04205 PF01965 DJ-1/PfpI family DDI_RS04210 PF08546 Ketopantoate reductase PanE/ApbA C terminal DDI_RS04210 PF02558 Ketopantoate reductase PanE/ApbA DDI_RS04215 PF04461 Protein of unknown function (DUF520) DDI_RS04220 PF00248 Aldo/keto reductase family DDI_RS04230 PF07690 Major Facilitator Superfamily DDI_RS04235 PF01040 UbiA prenyltransferase family DDI_RS04240 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DDI_RS04245 PF00510 Cytochrome c oxidase subunit III DDI_RS04250 PF00115 Cytochrome C and Quinol oxidase polypeptide I DDI_RS04255 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DDI_RS04255 PF06481 COX Aromatic Rich Motif DDI_RS04260 PF07690 Major Facilitator Superfamily DDI_RS04265 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DDI_RS04265 PF03923 Uncharacterized lipoprotein DDI_RS04270 PF01722 BolA-like protein DDI_RS04275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDI_RS04275 PF05697 Bacterial trigger factor protein (TF) DDI_RS04275 PF05698 Bacterial trigger factor protein (TF) C-terminus DDI_RS04280 PF00574 Clp protease DDI_RS04285 PF10431 C-terminal, D2-small domain, of ClpB protein DDI_RS04285 PF07724 AAA domain (Cdc48 subfamily) DDI_RS04285 PF06689 ClpX C4-type zinc finger DDI_RS04290 PF02190 ATP-dependent protease La (LON) substrate-binding domain DDI_RS04290 PF05362 Lon protease (S16) C-terminal proteolytic domain DDI_RS04290 PF00004 ATPase family associated with various cellular activities (AAA) DDI_RS04295 PF00216 Bacterial DNA-binding protein DDI_RS04300 PF13145 PPIC-type PPIASE domain DDI_RS04310 PF06508 Queuosine biosynthesis protein QueC DDI_RS04320 PF01037 Lrp/AsnC ligand binding domain DDI_RS04320 PF13404 AsnC-type helix-turn-helix domain DDI_RS04325 PF00664 ABC transporter transmembrane region DDI_RS04325 PF00005 ABC transporter DDI_RS04330 PF00664 ABC transporter transmembrane region DDI_RS04330 PF00005 ABC transporter DDI_RS04335 PF00543 Nitrogen regulatory protein P-II DDI_RS04340 PF00909 Ammonium Transporter Family DDI_RS04350 PF09619 Type III secretion system lipoprotein chaperone (YscW) DDI_RS04355 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DDI_RS04365 PF05321 Haemolysin expression modulating protein DDI_RS04370 PF10757 Biofilm formation regulator YbaJ DDI_RS04375 PF00444 Ribosomal protein L36 DDI_RS04380 PF01197 Ribosomal protein L31 DDI_RS04385 PF00873 AcrB/AcrD/AcrF family DDI_RS04390 PF00529 HlyD membrane-fusion protein of T1SS DDI_RS04390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS04395 PF00440 Bacterial regulatory proteins, tetR family DDI_RS04395 PF08361 MAATS-type transcriptional repressor, C-terminal region DDI_RS04400 PF12794 Mechanosensitive ion channel inner membrane domain 1 DDI_RS04400 PF12795 Mechanosensitive ion channel porin domain DDI_RS04400 PF00924 Mechanosensitive ion channel DDI_RS04405 PF10689 Protein of unknown function (DUF2496) DDI_RS04415 PF04304 Protein of unknown function (DUF454) DDI_RS04420 PF00156 Phosphoribosyl transferase domain DDI_RS04425 PF12169 DNA polymerase III subunits gamma and tau domain III DDI_RS04425 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding DDI_RS04425 PF12170 DNA polymerase III tau subunit V interacting with alpha DDI_RS04430 PF02575 YbaB/EbfC DNA-binding family DDI_RS04435 PF02132 RecR protein DDI_RS04435 PF13662 Toprim domain DDI_RS04440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS04440 PF00183 Hsp90 protein DDI_RS04445 PF05191 Adenylate kinase, active site lid DDI_RS04450 PF00762 Ferrochelatase DDI_RS04455 PF02254 TrkA-N domain DDI_RS04455 PF00999 Sodium/hydrogen exchanger family DDI_RS04460 PF02872 5'-nucleotidase, C-terminal domain DDI_RS04460 PF00149 Calcineurin-like phosphoesterase DDI_RS04475 PF02203 Tar ligand binding domain homologue DDI_RS04475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS04475 PF00672 HAMP domain DDI_RS04480 PF00295 Glycosyl hydrolases family 28 DDI_RS04485 PF04073 Aminoacyl-tRNA editing domain DDI_RS04490 PF01963 TraB family DDI_RS04495 PF00403 Heavy-metal-associated domain DDI_RS04500 PF13411 MerR HTH family regulatory protein DDI_RS04505 PF01957 NfeD-like C-terminal, partner-binding DDI_RS04510 PF16200 C-terminal region of band_7 DDI_RS04510 PF01145 SPFH domain / Band 7 family DDI_RS04515 PF00111 2Fe-2S iron-sulfur cluster binding domain DDI_RS04520 PF00268 Ribonucleotide reductase, small chain DDI_RS04525 PF00317 Ribonucleotide reductase, all-alpha domain DDI_RS04525 PF03477 ATP cone domain DDI_RS04525 PF02867 Ribonucleotide reductase, barrel domain DDI_RS04535 PF03989 DNA gyrase C-terminal domain, beta-propeller DDI_RS04535 PF00521 DNA gyrase/topoisomerase IV, subunit A DDI_RS04540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS04540 PF00072 Response regulator receiver domain DDI_RS04540 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS04540 PF09456 RcsC Alpha-Beta-Loop (ABL) DDI_RS04545 PF00196 Bacterial regulatory proteins, luxR family DDI_RS04545 PF00072 Response regulator receiver domain DDI_RS04550 PF16359 RcsD-ABL domain DDI_RS04550 PF01627 Hpt domain DDI_RS04550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS04555 PF07690 Major Facilitator Superfamily DDI_RS04560 PF00425 chorismate binding enzyme DDI_RS04565 PF16582 Middle domain of thiamine pyrophosphate DDI_RS04565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDI_RS04565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDI_RS04570 PF12697 Alpha/beta hydrolase family DDI_RS04575 PF00378 Enoyl-CoA hydratase/isomerase DDI_RS04580 PF13378 Enolase C-terminal domain-like DDI_RS04585 PF13193 AMP-binding enzyme C-terminal domain DDI_RS04585 PF00501 AMP-binding enzyme DDI_RS04590 PF07437 YfaZ precursor DDI_RS04595 PF00994 Probable molybdopterin binding domain DDI_RS04615 PF00085 Thioredoxin DDI_RS04620 PF00106 short chain dehydrogenase DDI_RS04625 PF13472 GDSL-like Lipase/Acylhydrolase family DDI_RS04630 PF00005 ABC transporter DDI_RS04640 PF00593 TonB dependent receptor DDI_RS04640 PF07715 TonB-dependent Receptor Plug Domain DDI_RS04645 PF01497 Periplasmic binding protein DDI_RS04650 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS04655 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS04660 PF02653 Branched-chain amino acid transport system / permease component DDI_RS04665 PF00005 ABC transporter DDI_RS04670 PF13407 Periplasmic binding protein domain DDI_RS04680 PF00356 Bacterial regulatory proteins, lacI family DDI_RS04685 PF00551 Formyl transferase DDI_RS04690 PF00586 AIR synthase related protein, N-terminal domain DDI_RS04690 PF02769 AIR synthase related protein, C-terminal domain DDI_RS04700 PF00860 Permease family DDI_RS04705 PF00308 Bacterial dnaA protein DDI_RS04710 PF03960 ArsC family DDI_RS04715 PF01435 Peptidase family M48 DDI_RS04715 PF07720 Tetratricopeptide repeat DDI_RS04720 PF00578 AhpC/TSA family DDI_RS04725 PF01842 ACT domain DDI_RS04730 PF00701 Dihydrodipicolinate synthetase family DDI_RS04735 PF06804 NlpB/DapX lipoprotein DDI_RS04740 PF01259 SAICAR synthetase DDI_RS04745 PF04284 Protein of unknown function (DUF441) DDI_RS04750 PF05127 Helicase DDI_RS04750 PF13718 GNAT acetyltransferase 2 DDI_RS04750 PF08351 Domain of unknown function (DUF1726) DDI_RS04750 PF17176 tRNA-binding domain DDI_RS04755 PF02230 Phospholipase/Carboxylesterase DDI_RS04760 PF13980 Uncharacterised protein family (UPF0370) DDI_RS04765 PF02557 D-alanyl-D-alanine carboxypeptidase DDI_RS04770 PF01546 Peptidase family M20/M25/M40 DDI_RS04770 PF07687 Peptidase dimerisation domain DDI_RS04775 PF03960 ArsC family DDI_RS04780 PF00313 'Cold-shock' DNA-binding domain DDI_RS04785 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DDI_RS04790 PF00795 Carbon-nitrogen hydrolase DDI_RS04795 PF02416 mttA/Hcf106 family DDI_RS04800 PF04055 Radical SAM superfamily DDI_RS04800 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DDI_RS04805 PF03099 Biotin/lipoate A/B protein ligase family DDI_RS04810 PF04359 Protein of unknown function (DUF493) DDI_RS04815 PF07943 Penicillin-binding protein 5, C-terminal domain DDI_RS04815 PF00768 D-alanyl-D-alanine carboxypeptidase DDI_RS04820 PF03330 Lytic transglycolase DDI_RS04820 PF05036 Sporulation related domain DDI_RS04825 PF01098 Cell cycle protein DDI_RS04830 PF03717 Penicillin-binding Protein dimerisation domain DDI_RS04830 PF00905 Penicillin binding protein transpeptidase domain DDI_RS04835 PF02590 Predicted SPOUT methyltransferase DDI_RS04845 PF01467 Cytidylyltransferase-like DDI_RS04850 PF14840 Processivity clamp loader gamma complex DNA pol III C-term DDI_RS04850 PF06144 DNA polymerase III, delta subunit DDI_RS04855 PF04390 Lipopolysaccharide-assembly DDI_RS04860 PF08264 Anticodon-binding domain of tRNA DDI_RS04860 PF13603 Leucyl-tRNA synthetase, Domain 2 DDI_RS04860 PF00133 tRNA synthetases class I (I, L, M and V) DDI_RS04865 PF07295 Zinc-ribbon containing domain DDI_RS04870 PF00005 ABC transporter DDI_RS04875 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS04880 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS04885 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS04890 PF00795 Carbon-nitrogen hydrolase DDI_RS04895 PF00571 CBS domain DDI_RS04895 PF03471 Transporter associated domain DDI_RS04900 PF02130 Uncharacterized protein family UPF0054 DDI_RS04905 PF02562 PhoH-like protein DDI_RS04910 PF04055 Radical SAM superfamily DDI_RS04910 PF01938 TRAM domain DDI_RS04910 PF00919 Uncharacterized protein family UPF0004 DDI_RS04915 PF01494 FAD binding domain DDI_RS04920 PF00893 Small Multidrug Resistance protein DDI_RS04955 PF13537 Glutamine amidotransferase domain DDI_RS04955 PF00733 Asparagine synthase DDI_RS04960 PF01047 MarR family DDI_RS04960 PF00480 ROK family DDI_RS04965 PF01979 Amidohydrolase family DDI_RS04970 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DDI_RS04975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDI_RS04975 PF00367 phosphotransferase system, EIIB DDI_RS04975 PF02378 Phosphotransferase system, EIIC DDI_RS04980 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DDI_RS04980 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDI_RS04985 PF01475 Ferric uptake regulator family DDI_RS04990 PF00258 Flavodoxin DDI_RS04995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS04995 PF00672 HAMP domain DDI_RS04995 PF02203 Tar ligand binding domain homologue DDI_RS05000 PF01402 Ribbon-helix-helix protein, copG family DDI_RS05005 PF12697 Alpha/beta hydrolase family DDI_RS05010 PF03925 SeqA protein C-terminal domain DDI_RS05010 PF17206 SeqA protein N-terminal domain DDI_RS05015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDI_RS05015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDI_RS05015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDI_RS05015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDI_RS05025 PF00486 Transcriptional regulatory protein, C terminal DDI_RS05025 PF00072 Response regulator receiver domain DDI_RS05030 PF13492 GAF domain DDI_RS05030 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS05030 PF02702 Osmosensitive K+ channel His kinase sensor domain DDI_RS05030 PF13493 Domain of unknown function (DUF4118) DDI_RS05030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS05035 PF02669 K+-transporting ATPase, c chain DDI_RS05045 PF03814 Potassium-transporting ATPase A subunit DDI_RS05055 PF10725 Protein of unknown function (DUF2517) DDI_RS05060 PF08349 Protein of unknown function (DUF1722) DDI_RS05065 PF00875 DNA photolyase DDI_RS05065 PF03441 FAD binding domain of DNA photolyase DDI_RS05070 PF01784 NIF3 (NGG1p interacting factor 3) DDI_RS05075 PF02682 Carboxyltransferase domain, subdomain C and D DDI_RS05080 PF02626 Carboxyltransferase domain, subdomain A and B DDI_RS05085 PF03746 LamB/YcsF family DDI_RS05090 PF00285 Citrate synthase, C-terminal domain DDI_RS05095 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DDI_RS05100 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DDI_RS05105 PF00890 FAD binding domain DDI_RS05105 PF02910 Fumarate reductase flavoprotein C-term DDI_RS05110 PF13085 2Fe-2S iron-sulfur cluster binding domain DDI_RS05115 PF00676 Dehydrogenase E1 component DDI_RS05115 PF02779 Transketolase, pyrimidine binding domain DDI_RS05115 PF16870 2-oxoglutarate dehydrogenase C-terminal DDI_RS05115 PF16078 2-oxoglutarate dehydrogenase N-terminus DDI_RS05120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDI_RS05120 PF02817 e3 binding domain DDI_RS05120 PF00364 Biotin-requiring enzyme DDI_RS05125 PF08442 ATP-grasp domain DDI_RS05125 PF00549 CoA-ligase DDI_RS05130 PF02629 CoA binding domain DDI_RS05130 PF00549 CoA-ligase DDI_RS05140 PF01654 Cytochrome bd terminal oxidase subunit I DDI_RS05145 PF02322 Cytochrome bd terminal oxidase subunit II DDI_RS05150 PF08173 Membrane bound YbgT-like protein DDI_RS05155 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) DDI_RS05160 PF03061 Thioesterase superfamily DDI_RS05165 PF01618 MotA/TolQ/ExbB proton channel family DDI_RS05170 PF02472 Biopolymer transport protein ExbD/TolR DDI_RS05175 PF06519 TolA C-terminal DDI_RS05180 PF07676 WD40-like Beta Propeller Repeat DDI_RS05180 PF04052 TolB amino-terminal domain DDI_RS05185 PF00691 OmpA family DDI_RS05190 PF13174 Tetratricopeptide repeat DDI_RS05190 PF16331 TolA binding protein trimerisation DDI_RS05205 PF04474 Protein of unknown function (DUF554) DDI_RS05210 PF02445 Quinolinate synthetase A protein DDI_RS05215 PF04973 Nicotinamide mononucleotide transporter DDI_RS05225 PF00793 DAHP synthetase I family DDI_RS05230 PF00300 Histidine phosphatase superfamily (branch 1) DDI_RS05240 PF01263 Aldose 1-epimerase DDI_RS05245 PF10509 Galactokinase galactose-binding signature DDI_RS05245 PF08544 GHMP kinases C terminal DDI_RS05245 PF00288 GHMP kinases N terminal domain DDI_RS05250 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DDI_RS05250 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DDI_RS05255 PF16363 GDP-mannose 4,6 dehydratase DDI_RS05260 PF00005 ABC transporter DDI_RS05265 PF03459 TOBE domain DDI_RS05265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS05270 PF10766 Multidrug efflux pump-associated protein AcrZ DDI_RS05280 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS05285 PF03459 TOBE domain DDI_RS05285 PF00005 ABC transporter DDI_RS05295 PF10282 Lactonase, 7-bladed beta-propeller DDI_RS05320 PF06903 VirK protein DDI_RS05325 PF01588 Putative tRNA binding domain DDI_RS05325 PF09334 tRNA synthetases class I (M) DDI_RS05330 PF10609 NUBPL iron-transfer P-loop NTPase DDI_RS05335 PF00485 Phosphoribulokinase / Uridine kinase family DDI_RS05340 PF00692 dUTPase DDI_RS05345 PF05170 AsmA family DDI_RS05350 PF03741 Integral membrane protein TerC family DDI_RS05350 PF00571 CBS domain DDI_RS05350 PF03471 Transporter associated domain DDI_RS05360 PF02563 Polysaccharide biosynthesis/export protein DDI_RS05360 PF18412 Outer-membrane lipoprotein Wza C-terminal domain DDI_RS05360 PF10531 SLBB domain DDI_RS05365 PF01451 Low molecular weight phosphotyrosine protein phosphatase DDI_RS05370 PF13614 AAA domain DDI_RS05370 PF13807 G-rich domain on putative tyrosine kinase DDI_RS05370 PF02706 Chain length determinant protein DDI_RS05375 PF02397 Bacterial sugar transferase DDI_RS05380 PF00535 Glycosyl transferase family 2 DDI_RS05385 PF16363 GDP-mannose 4,6 dehydratase DDI_RS05390 PF00483 Nucleotidyl transferase DDI_RS05395 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DDI_RS05400 PF04321 RmlD substrate binding domain DDI_RS05405 PF01943 Polysaccharide biosynthesis protein DDI_RS05415 PF00535 Glycosyl transferase family 2 DDI_RS05420 PF00535 Glycosyl transferase family 2 DDI_RS05435 PF01370 NAD dependent epimerase/dehydratase family DDI_RS05440 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DDI_RS05440 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DDI_RS05440 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DDI_RS05445 PF00483 Nucleotidyl transferase DDI_RS05455 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DDI_RS05455 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDI_RS05465 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF DDI_RS05475 PF06082 Exopolysaccharide biosynthesis protein YbjH DDI_RS05490 PF10282 Lactonase, 7-bladed beta-propeller DDI_RS05495 PF00210 Ferritin-like domain DDI_RS05500 PF00561 alpha/beta hydrolase fold DDI_RS05510 PF03472 Autoinducer binding domain DDI_RS05510 PF00196 Bacterial regulatory proteins, luxR family DDI_RS05515 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS05520 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS05520 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS05525 PF00005 ABC transporter DDI_RS05525 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS05530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS05530 PF00005 ABC transporter DDI_RS05535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS05540 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus DDI_RS05540 PF01048 Phosphorylase superfamily DDI_RS05545 PF07729 FCD domain DDI_RS05545 PF00392 Bacterial regulatory proteins, gntR family DDI_RS05550 PF05035 2-keto-3-deoxy-galactonokinase DDI_RS05555 PF01081 KDPG and KHG aldolase DDI_RS05560 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDI_RS05560 PF13378 Enolase C-terminal domain-like DDI_RS05565 PF07690 Major Facilitator Superfamily DDI_RS05570 PF08546 Ketopantoate reductase PanE/ApbA C terminal DDI_RS05570 PF02558 Ketopantoate reductase PanE/ApbA DDI_RS05575 PF03466 LysR substrate binding domain DDI_RS05575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS05580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDI_RS05605 PF13195 Protein of unknown function (DUF4011) DDI_RS05605 PF13087 AAA domain DDI_RS05605 PF13086 AAA domain DDI_RS05605 PF13086 AAA domain DDI_RS05605 PF13087 AAA domain DDI_RS05605 PF13195 Protein of unknown function (DUF4011) DDI_RS05620 PF02525 Flavodoxin-like fold DDI_RS05625 PF07519 Tannase and feruloyl esterase DDI_RS05635 PF00043 Glutathione S-transferase, C-terminal domain DDI_RS05635 PF13417 Glutathione S-transferase, N-terminal domain DDI_RS05645 PF12833 Helix-turn-helix domain DDI_RS05645 PF06719 AraC-type transcriptional regulator N-terminus DDI_RS05650 PF01810 LysE type translocator DDI_RS05665 PF07859 alpha/beta hydrolase fold DDI_RS05680 PF04237 YjbR DDI_RS05685 PF03960 ArsC family DDI_RS05690 PF02040 Arsenical pump membrane protein DDI_RS05695 PF02374 Anion-transporting ATPase DDI_RS05700 PF06953 Arsenical resistance operon trans-acting repressor ArsD DDI_RS05705 PF01022 Bacterial regulatory protein, arsR family DDI_RS05770 PF13693 Winged helix-turn-helix DNA-binding DDI_RS05785 PF13356 Arm DNA-binding domain DDI_RS05785 PF00589 Phage integrase family DDI_RS05795 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DDI_RS05795 PF00703 Glycosyl hydrolases family 2 DDI_RS05795 PF02837 Glycosyl hydrolases family 2, sugar binding domain DDI_RS05795 PF16353 Domain of unknown function(DUF4981) DDI_RS05795 PF02929 Beta galactosidase small chain DDI_RS05800 PF00356 Bacterial regulatory proteins, lacI family DDI_RS05805 PF01177 Asp/Glu/Hydantoin racemase DDI_RS05810 PF03466 LysR substrate binding domain DDI_RS05810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS05820 PF00440 Bacterial regulatory proteins, tetR family DDI_RS05825 PF00375 Sodium:dicarboxylate symporter family DDI_RS05830 PF02954 Bacterial regulatory protein, Fis family DDI_RS05830 PF01590 GAF domain DDI_RS05830 PF00158 Sigma-54 interaction domain DDI_RS05835 PF13614 AAA domain DDI_RS05845 PF00384 Molybdopterin oxidoreductase DDI_RS05845 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDI_RS05845 PF01568 Molydopterin dinucleotide binding domain DDI_RS05850 PF12800 4Fe-4S binding domain DDI_RS05850 PF13247 4Fe-4S dicluster domain DDI_RS05865 PF01750 Hydrogenase maturation protease DDI_RS05870 PF07450 Formate hydrogenlyase maturation protein HycH DDI_RS05875 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DDI_RS05880 PF12838 4Fe-4S dicluster domain DDI_RS05885 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DDI_RS05885 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DDI_RS05885 PF00374 Nickel-dependent hydrogenase DDI_RS05890 PF00361 Proton-conducting membrane transporter DDI_RS05890 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DDI_RS05895 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DDI_RS05900 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DDI_RS05900 PF00361 Proton-conducting membrane transporter DDI_RS05905 PF00146 NADH dehydrogenase DDI_RS05910 PF00361 Proton-conducting membrane transporter DDI_RS05915 PF00037 4Fe-4S binding domain DDI_RS05915 PF12798 4Fe-4S binding domain DDI_RS05920 PF01455 HupF/HypC family DDI_RS05925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS05925 PF03466 LysR substrate binding domain DDI_RS05930 PF00375 Sodium:dicarboxylate symporter family DDI_RS05935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDI_RS05940 PF02798 Glutathione S-transferase, N-terminal domain DDI_RS05945 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS05950 PF00005 ABC transporter DDI_RS05960 PF02615 Malate/L-lactate dehydrogenase DDI_RS05965 PF00291 Pyridoxal-phosphate dependent enzyme DDI_RS05970 PF01177 Asp/Glu/Hydantoin racemase DDI_RS05975 PF03605 Anaerobic c4-dicarboxylate membrane transporter DDI_RS05980 PF00171 Aldehyde dehydrogenase family DDI_RS05985 PF00202 Aminotransferase class-III DDI_RS05995 PF17841 BID domain of Bartonella effector protein (Bep) DDI_RS05995 PF02661 Fic/DOC family DDI_RS06000 PF00392 Bacterial regulatory proteins, gntR family DDI_RS06000 PF07702 UTRA domain DDI_RS06005 PF06754 Phosphonate metabolism protein PhnG DDI_RS06010 PF05845 Bacterial phosphonate metabolism protein (PhnH) DDI_RS06015 PF05861 Bacterial phosphonate metabolism protein (PhnI) DDI_RS06020 PF06007 Phosphonate metabolism protein PhnJ DDI_RS06025 PF00005 ABC transporter DDI_RS06030 PF00005 ABC transporter DDI_RS06035 PF07969 Amidohydrolase family DDI_RS06045 PF12706 Beta-lactamase superfamily domain DDI_RS06055 PF00005 ABC transporter DDI_RS06065 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS06070 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS06075 PF09827 CRISPR associated protein Cas2 DDI_RS06080 PF01867 CRISPR associated protein Cas1 DDI_RS06100 PF09704 CRISPR-associated protein (Cas_Cas5) DDI_RS06110 PF00202 Aminotransferase class-III DDI_RS06115 PF07715 TonB-dependent Receptor Plug Domain DDI_RS06115 PF00593 TonB dependent receptor DDI_RS06120 PF04183 IucA / IucC family DDI_RS06120 PF06276 Ferric iron reductase FhuF-like transporter DDI_RS06125 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DDI_RS06125 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DDI_RS06130 PF07690 Major Facilitator Superfamily DDI_RS06135 PF04183 IucA / IucC family DDI_RS06135 PF06276 Ferric iron reductase FhuF-like transporter DDI_RS06140 PF03328 HpcH/HpaI aldolase/citrate lyase family DDI_RS06145 PF06276 Ferric iron reductase FhuF-like transporter DDI_RS06145 PF04183 IucA / IucC family DDI_RS06155 PF01497 Periplasmic binding protein DDI_RS06160 PF01032 FecCD transport family DDI_RS06165 PF01032 FecCD transport family DDI_RS06170 PF00005 ABC transporter DDI_RS06175 PF03737 Aldolase/RraA DDI_RS06180 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system DDI_RS06210 PF12706 Beta-lactamase superfamily domain DDI_RS06215 PF01568 Molydopterin dinucleotide binding domain DDI_RS06215 PF00384 Molybdopterin oxidoreductase DDI_RS06215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDI_RS06220 PF13247 4Fe-4S dicluster domain DDI_RS06220 PF09163 Formate dehydrogenase N, transmembrane DDI_RS06220 PF12800 4Fe-4S binding domain DDI_RS06225 PF01292 Prokaryotic cytochrome b561 DDI_RS06235 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DDI_RS06235 PF00356 Bacterial regulatory proteins, lacI family DDI_RS06240 PF16874 Glycosyl hydrolase family 36 C-terminal domain DDI_RS06240 PF16875 Glycosyl hydrolase family 36 N-terminal domain DDI_RS06245 PF01306 LacY proton/sugar symporter DDI_RS06255 PF06165 Glycosyltransferase family 36 DDI_RS06255 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain DDI_RS06255 PF10091 Putative glucoamylase DDI_RS06275 PF00107 Zinc-binding dehydrogenase DDI_RS06275 PF08240 Alcohol dehydrogenase GroES-like domain DDI_RS06285 PF00529 HlyD membrane-fusion protein of T1SS DDI_RS06285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS06290 PF13533 Biotin-lipoyl like DDI_RS06295 PF00873 AcrB/AcrD/AcrF family DDI_RS06305 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS06310 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS06315 PF02472 Biopolymer transport protein ExbD/TolR DDI_RS06320 PF01618 MotA/TolQ/ExbB proton channel family DDI_RS06325 PF03544 Gram-negative bacterial TonB protein C-terminal DDI_RS06330 PF09084 NMT1/THI5 like DDI_RS06350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS06350 PF03466 LysR substrate binding domain DDI_RS06355 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) DDI_RS06365 PF03180 NLPA lipoprotein DDI_RS06370 PF00005 ABC transporter DDI_RS06370 PF09383 NIL domain DDI_RS06375 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS06385 PF00085 Thioredoxin DDI_RS06390 PF00005 ABC transporter DDI_RS06400 PF09084 NMT1/THI5 like DDI_RS06405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS06405 PF03466 LysR substrate binding domain DDI_RS06410 PF02611 CDP-diacylglycerol pyrophosphatase DDI_RS06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS06415 PF03466 LysR substrate binding domain DDI_RS06420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS06425 PF01156 Inosine-uridine preferring nucleoside hydrolase DDI_RS06430 PF01156 Inosine-uridine preferring nucleoside hydrolase DDI_RS06435 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS06440 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS06440 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS06445 PF00005 ABC transporter DDI_RS06445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS06455 PF01584 CheW-like domain DDI_RS06455 PF00072 Response regulator receiver domain DDI_RS06460 PF16957 Malonate decarboxylase, alpha subunit, transporter DDI_RS06465 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DDI_RS06470 PF06857 Malonate decarboxylase delta subunit (MdcD) DDI_RS06475 PF01039 Carboxyl transferase domain DDI_RS06485 PF03547 Membrane transport protein DDI_RS06490 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG DDI_RS06495 PF00698 Acyl transferase domain DDI_RS06500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS06500 PF03466 LysR substrate binding domain DDI_RS06505 PF00950 ABC 3 transport family DDI_RS06510 PF00950 ABC 3 transport family DDI_RS06515 PF00005 ABC transporter DDI_RS06520 PF01297 Zinc-uptake complex component A periplasmic DDI_RS06525 PF05368 NmrA-like family DDI_RS06545 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS06545 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS06550 PF00106 short chain dehydrogenase DDI_RS06555 PF00873 AcrB/AcrD/AcrF family DDI_RS06570 PF02321 Outer membrane efflux protein DDI_RS06575 PF01554 MatE DDI_RS06590 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath DDI_RS06600 PF05947 Type VI secretion system, TssF DDI_RS06620 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE DDI_RS06630 PF07724 AAA domain (Cdc48 subfamily) DDI_RS06630 PF00004 ATPase family associated with various cellular activities (AAA) DDI_RS06630 PF17871 AAA lid domain DDI_RS06630 PF10431 C-terminal, D2-small domain, of ClpB protein DDI_RS06635 PF00158 Sigma-54 interaction domain DDI_RS06635 PF02954 Bacterial regulatory protein, Fis family DDI_RS06650 PF14331 ImcF-related N-terminal domain DDI_RS06650 PF06761 Intracellular multiplication and human macrophage-killing DDI_RS06650 PF06744 Type VI secretion protein IcmF C-terminal DDI_RS06670 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS06670 PF01590 GAF domain DDI_RS06670 PF00563 EAL domain DDI_RS06670 PF00360 Phytochrome region DDI_RS06675 PF03239 Iron permease FTR1 family DDI_RS06680 PF13473 Cupredoxin-like domain DDI_RS06680 PF09375 Imelysin DDI_RS06685 PF04261 Dyp-type peroxidase family DDI_RS06690 PF06906 Protein of unknown function (DUF1272) DDI_RS06695 PF01925 Sulfite exporter TauE/SafE DDI_RS06700 PF02589 LUD domain DDI_RS06705 PF13183 4Fe-4S dicluster domain DDI_RS06705 PF11870 Domain of unknown function (DUF3390) DDI_RS06705 PF02589 LUD domain DDI_RS06710 PF02754 Cysteine-rich domain DDI_RS06720 PF04172 LrgB-like family DDI_RS06725 PF03788 LrgA family DDI_RS06735 PF00141 Peroxidase DDI_RS06740 PF01938 TRAM domain DDI_RS06740 PF05958 tRNA (Uracil-5-)-methyltransferase DDI_RS06745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS06750 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS06755 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS06755 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS06760 PF00005 ABC transporter DDI_RS06765 PF00005 ABC transporter DDI_RS06775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS06775 PF00529 HlyD membrane-fusion protein of T1SS DDI_RS06780 PF07690 Major Facilitator Superfamily DDI_RS06785 PF06445 GyrI-like small molecule binding domain DDI_RS06785 PF12833 Helix-turn-helix domain DDI_RS06790 PF10696 Protein of unknown function (DUF2501) DDI_RS06800 PF09313 Domain of unknown function (DUF1971) DDI_RS06805 PF08956 Domain of unknown function (DUF1869) DDI_RS06830 PF01348 Type II intron maturase DDI_RS06830 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) DDI_RS06900 PF00437 Type II/IV secretion system protein DDI_RS06905 PF03743 Bacterial conjugation TrbI-like protein DDI_RS06910 PF03524 Conjugal transfer protein DDI_RS06915 PF04335 VirB8 protein DDI_RS06935 PF03135 CagE, TrbE, VirB family, component of type IV transporter system DDI_RS06955 PF13166 AAA domain DDI_RS06965 PF01258 Prokaryotic dksA/traR C4-type zinc finger DDI_RS06990 PF13693 Winged helix-turn-helix DNA-binding DDI_RS06995 PF01381 Helix-turn-helix DDI_RS07000 PF05638 Type VI secretion system effector, Hcp DDI_RS07005 PF04717 Type VI secretion system, phage-baseplate injector DDI_RS07045 PF05284 Protein of unknown function (DUF736) DDI_RS07050 PF13356 Arm DNA-binding domain DDI_RS07050 PF00589 Phage integrase family DDI_RS07060 PF06167 Glucose-regulated metallo-peptidase M90 DDI_RS07080 PF01679 Proteolipid membrane potential modulator DDI_RS07085 PF03358 NADPH-dependent FMN reductase DDI_RS07090 PF00535 Glycosyl transferase family 2 DDI_RS07090 PF13181 Tetratricopeptide repeat DDI_RS07100 PF00899 ThiF family DDI_RS07105 PF03454 MoeA C-terminal region (domain IV) DDI_RS07105 PF03453 MoeA N-terminal region (domain I and II) DDI_RS07105 PF00994 Probable molybdopterin binding domain DDI_RS07110 PF03949 Malic enzyme, NAD binding domain DDI_RS07110 PF00390 Malic enzyme, N-terminal domain DDI_RS07115 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region DDI_RS07115 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDI_RS07120 PF04172 LrgB-like family DDI_RS07125 PF03788 LrgA family DDI_RS07135 PF00202 Aminotransferase class-III DDI_RS07140 PF06968 Biotin and Thiamin Synthesis associated domain DDI_RS07140 PF04055 Radical SAM superfamily DDI_RS07145 PF00155 Aminotransferase class I and II DDI_RS07150 PF08241 Methyltransferase domain DDI_RS07160 PF00271 Helicase conserved C-terminal domain DDI_RS07160 PF12344 Ultra-violet resistance protein B DDI_RS07160 PF17757 UvrB interaction domain DDI_RS07160 PF04851 Type III restriction enzyme, res subunit DDI_RS07160 PF02151 UvrB/uvrC motif DDI_RS07165 PF01933 Uncharacterised protein family UPF0052 DDI_RS07170 PF04055 Radical SAM superfamily DDI_RS07170 PF06463 Molybdenum Cofactor Synthesis C DDI_RS07175 PF00994 Probable molybdopterin binding domain DDI_RS07180 PF01967 MoaC family DDI_RS07185 PF02597 ThiS family DDI_RS07190 PF02391 MoaE protein DDI_RS07200 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS07205 PF00005 ABC transporter DDI_RS07210 PF01027 Inhibitor of apoptosis-promoting Bax1 DDI_RS07215 PF13091 PLD-like domain DDI_RS07220 PF03372 Endonuclease/Exonuclease/phosphatase family DDI_RS07235 PF00005 ABC transporter DDI_RS07240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS07245 PF00270 DEAD/DEAH box helicase DDI_RS07245 PF00271 Helicase conserved C-terminal domain DDI_RS07250 PF00892 EamA-like transporter family DDI_RS07270 PF01546 Peptidase family M20/M25/M40 DDI_RS07270 PF07687 Peptidase dimerisation domain DDI_RS07275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS07280 PF01207 Dihydrouridine synthase (Dus) DDI_RS07285 PF01928 CYTH domain DDI_RS07290 PF00768 D-alanyl-D-alanine carboxypeptidase DDI_RS07295 PF00043 Glutathione S-transferase, C-terminal domain DDI_RS07295 PF13417 Glutathione S-transferase, N-terminal domain DDI_RS07305 PF08220 DeoR-like helix-turn-helix domain DDI_RS07305 PF00455 DeoR C terminal sensor domain DDI_RS07310 PF00202 Aminotransferase class-III DDI_RS07315 PF01915 Glycosyl hydrolase family 3 C-terminal domain DDI_RS07315 PF14310 Fibronectin type III-like domain DDI_RS07315 PF00933 Glycosyl hydrolase family 3 N terminal domain DDI_RS07325 PF13307 Helicase C-terminal domain DDI_RS07325 PF06733 DEAD_2 DDI_RS07330 PF02885 Glycosyl transferase family, helical bundle domain DDI_RS07340 PF01569 PAP2 superfamily DDI_RS07360 PF00005 ABC transporter DDI_RS07365 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS07370 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS07375 PF00210 Ferritin-like domain DDI_RS07380 PF00892 EamA-like transporter family DDI_RS07385 PF13505 Outer membrane protein beta-barrel domain DDI_RS07390 PF01047 MarR family DDI_RS07395 PF07690 Major Facilitator Superfamily DDI_RS07400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS07400 PF03466 LysR substrate binding domain DDI_RS07405 PF03746 LamB/YcsF family DDI_RS07415 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDI_RS07415 PF02785 Biotin carboxylase C-terminal domain DDI_RS07415 PF00289 Biotin carboxylase, N-terminal domain DDI_RS07425 PF02626 Carboxyltransferase domain, subdomain A and B DDI_RS07445 PF00005 ABC transporter DDI_RS07450 PF12704 MacB-like periplasmic core domain DDI_RS07450 PF02687 FtsX-like permease family DDI_RS07450 PF00005 ABC transporter DDI_RS07460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS07465 PF01095 Pectinesterase DDI_RS07470 PF06942 GlpM protein DDI_RS07480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS07485 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS07490 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS07490 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS07495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS07495 PF00005 ABC transporter DDI_RS07500 PF00005 ABC transporter DDI_RS07500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS07525 PF00106 short chain dehydrogenase DDI_RS07555 PF00933 Glycosyl hydrolase family 3 N terminal domain DDI_RS07615 PF13132 Domain of unknown function (DUF3950) DDI_RS07630 PF00884 Sulfatase DDI_RS07630 PF11893 Domain of unknown function (DUF3413) DDI_RS07635 PF07208 Protein of unknown function (DUF1414) DDI_RS07640 PF04245 37-kD nucleoid-associated bacterial protein DDI_RS07645 PF06580 Histidine kinase DDI_RS07645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS07645 PF07694 5TMR of 5TMR-LYT DDI_RS07650 PF00072 Response regulator receiver domain DDI_RS07650 PF04397 LytTr DNA-binding domain DDI_RS07655 PF07690 Major Facilitator Superfamily DDI_RS07660 PF01386 Ribosomal L25p family DDI_RS07665 PF00271 Helicase conserved C-terminal domain DDI_RS07665 PF04851 Type III restriction enzyme, res subunit DDI_RS07670 PF10678 Protein of unknown function (DUF2492) DDI_RS07675 PF01479 S4 domain DDI_RS07675 PF00849 RNA pseudouridylate synthase DDI_RS07680 PF07690 Major Facilitator Superfamily DDI_RS07690 PF13989 YejG-like protein DDI_RS07695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS07695 PF00005 ABC transporter DDI_RS07700 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS07700 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS07705 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS07710 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS07715 PF00877 NlpC/P60 family DDI_RS07720 PF02492 CobW/HypB/UreG, nucleotide-binding domain DDI_RS07720 PF07683 Cobalamin synthesis protein cobW C-terminal domain DDI_RS07725 PF01132 Elongation factor P (EF-P) OB domain DDI_RS07725 PF08207 Elongation factor P (EF-P) KOW-like domain DDI_RS07725 PF09285 Elongation factor P, C-terminal DDI_RS07730 PF03692 Putative zinc- or iron-chelating domain DDI_RS07735 PF07690 Major Facilitator Superfamily DDI_RS07740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDI_RS07740 PF00381 PTS HPr component phosphorylation site DDI_RS07745 PF00294 pfkB family carbohydrate kinase DDI_RS07750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDI_RS07750 PF02378 Phosphotransferase system, EIIC DDI_RS07755 PF01261 Xylose isomerase-like TIM barrel DDI_RS07760 PF03601 Conserved hypothetical protein 698 DDI_RS07765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS07765 PF03466 LysR substrate binding domain DDI_RS07770 PF00324 Amino acid permease DDI_RS07775 PF07690 Major Facilitator Superfamily DDI_RS07780 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DDI_RS07780 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DDI_RS07795 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDI_RS07795 PF02817 e3 binding domain DDI_RS07795 PF00364 Biotin-requiring enzyme DDI_RS07805 PF02653 Branched-chain amino acid transport system / permease component DDI_RS07810 PF00005 ABC transporter DDI_RS07820 PF00465 Iron-containing alcohol dehydrogenase DDI_RS07830 PF00756 Putative esterase DDI_RS07835 PF00107 Zinc-binding dehydrogenase DDI_RS07835 PF08240 Alcohol dehydrogenase GroES-like domain DDI_RS07840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS07840 PF03466 LysR substrate binding domain DDI_RS07850 PF02203 Tar ligand binding domain homologue DDI_RS07850 PF00672 HAMP domain DDI_RS07850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS07855 PF00672 HAMP domain DDI_RS07855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS07855 PF02203 Tar ligand binding domain homologue DDI_RS07860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS07860 PF02203 Tar ligand binding domain homologue DDI_RS07860 PF00672 HAMP domain DDI_RS07865 PF00672 HAMP domain DDI_RS07865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS07865 PF02203 Tar ligand binding domain homologue DDI_RS07870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS07870 PF02203 Tar ligand binding domain homologue DDI_RS07870 PF00672 HAMP domain DDI_RS07875 PF01227 GTP cyclohydrolase I DDI_RS07880 PF04235 Protein of unknown function (DUF418) DDI_RS07885 PF02698 DUF218 domain DDI_RS07890 PF18693 TRAM domain DDI_RS07890 PF04055 Radical SAM superfamily DDI_RS07890 PF00919 Uncharacterized protein family UPF0004 DDI_RS07895 PF07995 Glucose / Sorbosone dehydrogenase DDI_RS07900 PF13417 Glutathione S-transferase, N-terminal domain DDI_RS07900 PF00043 Glutathione S-transferase, C-terminal domain DDI_RS07905 PF03180 NLPA lipoprotein DDI_RS07910 PF09383 NIL domain DDI_RS07910 PF00005 ABC transporter DDI_RS07915 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS07920 PF00561 alpha/beta hydrolase fold DDI_RS07925 PF00768 D-alanyl-D-alanine carboxypeptidase DDI_RS07925 PF07943 Penicillin-binding protein 5, C-terminal domain DDI_RS07930 PF08220 DeoR-like helix-turn-helix domain DDI_RS07930 PF00455 DeoR C terminal sensor domain DDI_RS07935 PF02080 TrkA-C domain DDI_RS07935 PF06826 Predicted Permease Membrane Region DDI_RS07945 PF11045 Putative inner membrane protein of Enterobacteriaceae DDI_RS07950 PF00462 Glutaredoxin DDI_RS07955 PF00881 Nitroreductase family DDI_RS07960 PF18030 RimK PreATP-grasp domain DDI_RS07960 PF08443 RimK-like ATP-grasp domain DDI_RS07965 PF10722 Putative bacterial sensory transduction regulator DDI_RS07970 PF13416 Bacterial extracellular solute-binding protein DDI_RS07975 PF08402 TOBE domain DDI_RS07975 PF00005 ABC transporter DDI_RS07980 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS07985 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS07990 PF10767 Protein of unknown function (DUF2593) DDI_RS07995 PF05958 tRNA (Uracil-5-)-methyltransferase DDI_RS08005 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS08010 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS08015 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS08020 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS08025 PF00005 ABC transporter DDI_RS08030 PF01510 N-acetylmuramoyl-L-alanine amidase DDI_RS08035 PF11066 Protein of unknown function (DUF2867) DDI_RS08035 PF13460 NAD(P)H-binding DDI_RS08040 PF00111 2Fe-2S iron-sulfur cluster binding domain DDI_RS08040 PF00970 Oxidoreductase FAD-binding domain DDI_RS08040 PF00175 Oxidoreductase NAD-binding domain DDI_RS08045 PF03063 Prismane/CO dehydrogenase family DDI_RS08050 PF11398 Protein of unknown function (DUF2813) DDI_RS08055 PF00313 'Cold-shock' DNA-binding domain DDI_RS08060 PF02617 ATP-dependent Clp protease adaptor protein ClpS DDI_RS08065 PF10431 C-terminal, D2-small domain, of ClpB protein DDI_RS08065 PF00004 ATPase family associated with various cellular activities (AAA) DDI_RS08065 PF02861 Clp amino terminal domain, pathogenicity island component DDI_RS08065 PF07724 AAA domain (Cdc48 subfamily) DDI_RS08065 PF17871 AAA lid domain DDI_RS08070 PF01176 Translation initiation factor 1A / IF-1 DDI_RS08080 PF03588 Leucyl/phenylalanyl-tRNA protein transferase DDI_RS08085 PF00005 ABC transporter DDI_RS08085 PF00664 ABC transporter transmembrane region DDI_RS08090 PF00005 ABC transporter DDI_RS08090 PF00664 ABC transporter transmembrane region DDI_RS08095 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS08100 PF01037 Lrp/AsnC ligand binding domain DDI_RS08105 PF17854 FtsK alpha domain DDI_RS08105 PF09397 Ftsk gamma domain DDI_RS08105 PF13491 4TM region of DNA translocase FtsK/SpoIIIE DDI_RS08105 PF01580 FtsK/SpoIIIE family DDI_RS08110 PF03548 Outer membrane lipoprotein carrier protein LolA DDI_RS08115 PF00004 ATPase family associated with various cellular activities (AAA) DDI_RS08115 PF16193 AAA C-terminal domain DDI_RS08115 PF12002 MgsA AAA+ ATPase C terminal DDI_RS08120 PF02403 Seryl-tRNA synthetase N-terminal domain DDI_RS08120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDI_RS08125 PF02613 Nitrate reductase delta subunit DDI_RS08140 PF03466 LysR substrate binding domain DDI_RS08140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS08145 PF07690 Major Facilitator Superfamily DDI_RS08155 PF04055 Radical SAM superfamily DDI_RS08160 PF01228 Glycine radical DDI_RS08160 PF02901 Pyruvate formate lyase-like DDI_RS08165 PF01226 Formate/nitrite transporter DDI_RS08170 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding DDI_RS08170 PF18381 YcaO cyclodehydratase C-terminal domain DDI_RS08175 PF00266 Aminotransferase class-V DDI_RS08180 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDI_RS08185 PF02224 Cytidylate kinase DDI_RS08190 PF00575 S1 RNA binding domain DDI_RS08195 PF00216 Bacterial DNA-binding protein DDI_RS08210 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DDI_RS08210 PF01502 Phosphoribosyl-AMP cyclohydrolase DDI_RS08215 PF00977 Histidine biosynthesis protein DDI_RS08220 PF00977 Histidine biosynthesis protein DDI_RS08225 PF00117 Glutamine amidotransferase class-I DDI_RS08230 PF00475 Imidazoleglycerol-phosphate dehydratase DDI_RS08235 PF00155 Aminotransferase class I and II DDI_RS08240 PF00815 Histidinol dehydrogenase DDI_RS08245 PF08029 HisG, C-terminal domain DDI_RS08245 PF01634 ATP phosphoribosyltransferase DDI_RS08250 PF01370 NAD dependent epimerase/dehydratase family DDI_RS08255 PF00672 HAMP domain DDI_RS08255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS08255 PF02203 Tar ligand binding domain homologue DDI_RS08260 PF12431 Transcriptional regulator DDI_RS08260 PF00072 Response regulator receiver domain DDI_RS08265 PF17203 Single cache domain 3 DDI_RS08265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS08270 PF03390 2-hydroxycarboxylate transporter family DDI_RS08275 PF01557 Fumarylacetoacetate (FAA) hydrolase family DDI_RS08280 PF08218 Citrate lyase ligase C-terminal domain DDI_RS08285 PF06857 Malonate decarboxylase delta subunit (MdcD) DDI_RS08290 PF03328 HpcH/HpaI aldolase/citrate lyase family DDI_RS08295 PF04223 Citrate lyase, alpha subunit (CitF) DDI_RS08300 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DDI_RS08305 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DDI_RS08310 PF07238 PilZ domain DDI_RS08310 PF07317 Flagellar regulator YcgR DDI_RS08320 PF13520 Amino acid permease DDI_RS08325 PF08411 Exonuclease C-terminal DDI_RS08325 PF00929 Exonuclease DDI_RS08330 PF04363 Protein of unknown function (DUF496) DDI_RS08340 PF00753 Metallo-beta-lactamase superfamily DDI_RS08340 PF03772 Competence protein DDI_RS08345 PF00664 ABC transporter transmembrane region DDI_RS08345 PF00005 ABC transporter DDI_RS08350 PF02606 Tetraacyldisaccharide-1-P 4'-kinase DDI_RS08355 PF03966 Trm112p-like protein DDI_RS08360 PF02348 Cytidylyltransferase DDI_RS08370 PF13229 Right handed beta helix region DDI_RS08375 PF01636 Phosphotransferase enzyme family DDI_RS08380 PF02698 DUF218 domain DDI_RS08385 PF13847 Methyltransferase domain DDI_RS08390 PF17192 MukF middle domain DDI_RS08390 PF03882 MukF winged-helix domain DDI_RS08390 PF17193 MukF C-terminal domain DDI_RS08395 PF04288 MukE-like family DDI_RS08400 PF04310 MukB N-terminal DDI_RS08400 PF16330 MukB hinge domain DDI_RS08415 PF07731 Multicopper oxidase DDI_RS08415 PF07732 Multicopper oxidase DDI_RS08415 PF10518 TAT (twin-arginine translocation) pathway signal sequence DDI_RS08415 PF00394 Multicopper oxidase DDI_RS08420 PF01638 HxlR-like helix-turn-helix DDI_RS08425 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDI_RS08430 PF00293 NUDIX domain DDI_RS08435 PF00445 Ribonuclease T2 family DDI_RS08440 PF00293 NUDIX domain DDI_RS08445 PF08220 DeoR-like helix-turn-helix domain DDI_RS08445 PF00455 DeoR C terminal sensor domain DDI_RS08450 PF03466 LysR substrate binding domain DDI_RS08450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS08455 PF00795 Carbon-nitrogen hydrolase DDI_RS08480 PF02811 PHP domain DDI_RS08485 PF02613 Nitrate reductase delta subunit DDI_RS08490 PF07273 Protein of unknown function (DUF1439) DDI_RS08495 PF04399 Glutaredoxin 2, C terminal domain DDI_RS08495 PF13417 Glutathione S-transferase, N-terminal domain DDI_RS08500 PF07690 Major Facilitator Superfamily DDI_RS08505 PF13302 Acetyltransferase (GNAT) domain DDI_RS08510 PF04337 Protein of unknown function, DUF480 DDI_RS08515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDI_RS08520 PF03023 Lipid II flippase MurJ DDI_RS08605 PF01434 Peptidase family M41 DDI_RS08605 PF00004 ATPase family associated with various cellular activities (AAA) DDI_RS08605 PF17862 AAA+ lid domain DDI_RS08620 PF05746 DALR anticodon binding domain DDI_RS08620 PF03485 Arginyl tRNA synthetase N terminal domain DDI_RS08620 PF00750 tRNA synthetases class I (R) DDI_RS08625 PF06185 YecM protein DDI_RS08630 PF03932 CutC family DDI_RS08640 PF08003 Protein of unknown function (DUF1698) DDI_RS08645 PF13649 Methyltransferase domain DDI_RS08650 PF01124 MAPEG family DDI_RS08655 PF01904 Protein of unknown function DUF72 DDI_RS08665 PF02938 GAD domain DDI_RS08665 PF01336 OB-fold nucleic acid binding domain DDI_RS08665 PF00152 tRNA synthetases class II (D, K and N) DDI_RS08670 PF00293 NUDIX domain DDI_RS08675 PF01709 Transcriptional regulator DDI_RS08680 PF02075 Crossover junction endodeoxyribonuclease RuvC DDI_RS08685 PF03824 High-affinity nickel-transport protein DDI_RS08690 PF01330 RuvA N terminal domain DDI_RS08690 PF07499 RuvA, C-terminal domain DDI_RS08695 PF05496 Holliday junction DNA helicase RuvB P-loop domain DDI_RS08695 PF05491 RuvB C-terminal winged helix domain DDI_RS08695 PF17864 RuvB AAA lid domain DDI_RS08700 PF00950 ABC 3 transport family DDI_RS08705 PF00005 ABC transporter DDI_RS08710 PF01297 Zinc-uptake complex component A periplasmic DDI_RS08715 PF01551 Peptidase family M23 DDI_RS08715 PF01476 LysM domain DDI_RS08715 PF08525 Opacity-associated protein A N-terminal motif DDI_RS08720 PF03279 Bacterial lipid A biosynthesis acyltransferase DDI_RS08735 PF02887 Pyruvate kinase, alpha/beta domain DDI_RS08735 PF00224 Pyruvate kinase, barrel domain DDI_RS08740 PF01418 Helix-turn-helix domain, rpiR family DDI_RS08740 PF01380 SIS domain DDI_RS08745 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DDI_RS08745 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DDI_RS08750 PF01081 KDPG and KHG aldolase DDI_RS08755 PF02222 ATP-grasp domain DDI_RS08760 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain DDI_RS08760 PF00326 Prolyl oligopeptidase family DDI_RS08765 PF06440 DNA polymerase III, theta subunit DDI_RS08775 PF05425 Copper resistance protein D DDI_RS08780 PF00210 Ferritin-like domain DDI_RS08795 PF00072 Response regulator receiver domain DDI_RS08795 PF02954 Bacterial regulatory protein, Fis family DDI_RS08795 PF00158 Sigma-54 interaction domain DDI_RS08800 PF00072 Response regulator receiver domain DDI_RS08800 PF00158 Sigma-54 interaction domain DDI_RS08800 PF02954 Bacterial regulatory protein, Fis family DDI_RS08805 PF00072 Response regulator receiver domain DDI_RS08805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS08805 PF13188 PAS domain DDI_RS08805 PF08448 PAS fold DDI_RS08805 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS08825 PF01548 Transposase DDI_RS08825 PF02371 Transposase IS116/IS110/IS902 family DDI_RS08875 PF10709 Protein of unknown function (DUF2511) DDI_RS08885 PF04226 Transglycosylase associated protein DDI_RS08890 PF04285 Protein of unknown function (DUF444) DDI_RS08895 PF06798 PrkA serine protein kinase C-terminal domain DDI_RS08895 PF08298 PrkA AAA domain DDI_RS08900 PF06629 MltA-interacting protein MipA DDI_RS08905 PF00248 Aldo/keto reductase family DDI_RS08910 PF01263 Aldose 1-epimerase DDI_RS08915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DDI_RS08915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DDI_RS08920 PF01641 SelR domain DDI_RS08925 PF07023 Protein of unknown function (DUF1315) DDI_RS08930 PF00857 Isochorismatase family DDI_RS08935 PF00710 Asparaginase, N-terminal DDI_RS08935 PF17763 Glutaminase/Asparaginase C-terminal domain DDI_RS08940 PF01343 Peptidase family S49 DDI_RS08945 PF00881 Nitroreductase family DDI_RS08950 PF01751 Toprim domain DDI_RS08950 PF01131 DNA topoisomerase DDI_RS08955 PF07383 Protein of unknown function (DUF1496) DDI_RS08960 PF03372 Endonuclease/Exonuclease/phosphatase family DDI_RS08965 PF03458 UPF0126 domain DDI_RS08975 PF01842 ACT domain DDI_RS08975 PF00551 Formyl transferase DDI_RS08980 PF02810 SEC-C motif DDI_RS08985 PF01734 Patatin-like phospholipase DDI_RS08990 PF00072 Response regulator receiver domain DDI_RS08995 PF00483 Nucleotidyl transferase DDI_RS09000 PF00816 H-NS histone family DDI_RS09005 PF00265 Thymidine kinase DDI_RS09010 PF00171 Aldehyde dehydrogenase family DDI_RS09010 PF00465 Iron-containing alcohol dehydrogenase DDI_RS09015 PF01914 MarC family integral membrane protein DDI_RS09025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS09030 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS09035 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS09035 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS09040 PF00005 ABC transporter DDI_RS09040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS09045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS09045 PF00005 ABC transporter DDI_RS09050 PF04269 Protein of unknown function, DUF440 DDI_RS09055 PF13396 Phospholipase_D-nuclease N-terminal DDI_RS09055 PF13091 PLD-like domain DDI_RS09065 PF00672 HAMP domain DDI_RS09065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS09065 PF02203 Tar ligand binding domain homologue DDI_RS09070 PF03795 YCII-related domain DDI_RS09075 PF03544 Gram-negative bacterial TonB protein C-terminal DDI_RS09080 PF03061 Thioesterase superfamily DDI_RS09085 PF04279 Intracellular septation protein A DDI_RS09100 PF03922 OmpW family DDI_RS09105 PF06178 Oligogalacturonate-specific porin protein (KdgM) DDI_RS09110 PF00290 Tryptophan synthase alpha chain DDI_RS09115 PF00291 Pyridoxal-phosphate dependent enzyme DDI_RS09120 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DDI_RS09120 PF00218 Indole-3-glycerol phosphate synthase DDI_RS09125 PF00591 Glycosyl transferase family, a/b domain DDI_RS09125 PF02885 Glycosyl transferase family, helical bundle domain DDI_RS09130 PF00117 Glutamine amidotransferase class-I DDI_RS09135 PF00425 chorismate binding enzyme DDI_RS09135 PF04715 Anthranilate synthase component I, N terminal region DDI_RS09140 PF02811 PHP domain DDI_RS09145 PF01300 Telomere recombination DDI_RS09150 PF00849 RNA pseudouridylate synthase DDI_RS09150 PF01479 S4 domain DDI_RS09155 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DDI_RS09155 PF12557 Cob(I)alamin adenosyltransferase N terminal DDI_RS09160 PF00106 short chain dehydrogenase DDI_RS09165 PF08496 Peptidase family S49 N-terminal DDI_RS09165 PF01343 Peptidase family S49 DDI_RS09180 PF10692 Protein of unknown function (DUF2498) DDI_RS09185 PF01396 Topoisomerase DNA binding C4 zinc finger DDI_RS09185 PF01751 Toprim domain DDI_RS09185 PF01131 DNA topoisomerase DDI_RS09185 PF08272 Topoisomerase I zinc-ribbon-like DDI_RS09190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS09190 PF03466 LysR substrate binding domain DDI_RS09195 PF00633 Helix-hairpin-helix motif DDI_RS09195 PF00730 HhH-GPD superfamily base excision DNA repair protein DDI_RS09195 PF10576 Iron-sulfur binding domain of endonuclease III DDI_RS09200 PF02508 Rnf-Nqr subunit, membrane protein DDI_RS09205 PF04205 FMN-binding domain DDI_RS09210 PF03116 NQR2, RnfD, RnfE family DDI_RS09215 PF10531 SLBB domain DDI_RS09215 PF13375 RnfC Barrel sandwich hybrid domain DDI_RS09215 PF13237 4Fe-4S dicluster domain DDI_RS09215 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DDI_RS09220 PF04060 Putative Fe-S cluster DDI_RS09225 PF02508 Rnf-Nqr subunit, membrane protein DDI_RS09230 PF14686 Polysaccharide lyase family 4, domain II DDI_RS09230 PF14683 Polysaccharide lyase family 4, domain III DDI_RS09235 PF02610 L-arabinose isomerase DDI_RS09235 PF11762 L-arabinose isomerase C-terminal domain DDI_RS09240 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDI_RS09245 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DDI_RS09250 PF00005 ABC transporter DDI_RS09255 PF02653 Branched-chain amino acid transport system / permease component DDI_RS09260 PF12833 Helix-turn-helix domain DDI_RS09260 PF02311 AraC-like ligand binding domain DDI_RS09265 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDI_RS09265 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDI_RS09270 PF13593 SBF-like CPA transporter family (DUF4137) DDI_RS09280 PF00962 Adenosine/AMP deaminase DDI_RS09285 PF06097 Bacterial protein of unknown function (DUF945) DDI_RS09290 PF01238 Phosphomannose isomerase type I DDI_RS09295 PF00206 Lyase DDI_RS09295 PF10415 Fumarase C C-terminus DDI_RS09300 PF05472 DNA replication terminus site-binding protein (Ter protein) DDI_RS09305 PF07690 Major Facilitator Superfamily DDI_RS09310 PF03466 LysR substrate binding domain DDI_RS09310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS09315 PF00480 ROK family DDI_RS09325 PF06932 Protein of unknown function (DUF1283) DDI_RS09330 PF00106 short chain dehydrogenase DDI_RS09345 PF09722 Protein of unknown function (DUF2384) DDI_RS09350 PF08808 RES domain DDI_RS09375 PF03330 Lytic transglycolase DDI_RS09390 PF02705 K+ potassium transporter DDI_RS09400 PF08548 Peptidase M10 serralysin C terminal DDI_RS09400 PF00413 Matrixin DDI_RS09400 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DDI_RS09405 PF08548 Peptidase M10 serralysin C terminal DDI_RS09405 PF00413 Matrixin DDI_RS09405 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) DDI_RS09410 PF02321 Outer membrane efflux protein DDI_RS09415 PF00529 HlyD membrane-fusion protein of T1SS DDI_RS09420 PF00664 ABC transporter transmembrane region DDI_RS09420 PF00005 ABC transporter DDI_RS09425 PF02974 Protease inhibitor Inh DDI_RS09430 PF05368 NmrA-like family DDI_RS09455 PF05199 GMC oxidoreductase DDI_RS09455 PF00732 GMC oxidoreductase DDI_RS09460 PF12902 Ferritin-like DDI_RS09465 PF00459 Inositol monophosphatase family DDI_RS09470 PF03009 Glycerophosphoryl diester phosphodiesterase family DDI_RS09480 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS09490 PF00005 ABC transporter DDI_RS09490 PF08402 TOBE domain DDI_RS09505 PF05870 Phenolic acid decarboxylase (PAD) DDI_RS09515 PF00391 PEP-utilising enzyme, mobile domain DDI_RS09515 PF00550 Phosphopantetheine attachment site DDI_RS09515 PF00501 AMP-binding enzyme DDI_RS09515 PF00668 Condensation domain DDI_RS09515 PF00975 Thioesterase domain DDI_RS09515 PF08241 Methyltransferase domain DDI_RS09515 PF13193 AMP-binding enzyme C-terminal domain DDI_RS09540 PF02203 Tar ligand binding domain homologue DDI_RS09540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS09540 PF00672 HAMP domain DDI_RS09555 PF00080 Copper/zinc superoxide dismutase (SODC) DDI_RS09560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS09560 PF00672 HAMP domain DDI_RS09560 PF02743 Cache domain DDI_RS09565 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DDI_RS09565 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DDI_RS09570 PF00027 Cyclic nucleotide-binding domain DDI_RS09570 PF00325 Bacterial regulatory proteins, crp family DDI_RS09575 PF00582 Universal stress protein family DDI_RS09580 PF02233 NAD(P) transhydrogenase beta subunit DDI_RS09585 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch DDI_RS09585 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DDI_RS09585 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DDI_RS09590 PF07338 Protein of unknown function (DUF1471) DDI_RS09595 PF00793 DAHP synthetase I family DDI_RS09600 PF13369 Transglutaminase-like superfamily DDI_RS09605 PF17827 PrmC N-terminal domain DDI_RS09605 PF13847 Methyltransferase domain DDI_RS09610 PF00472 RF-1 domain DDI_RS09610 PF03462 PCRF domain DDI_RS09615 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DDI_RS09615 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DDI_RS09615 PF01488 Shikimate / quinate 5-dehydrogenase DDI_RS09620 PF03550 Outer membrane lipoprotein LolB DDI_RS09625 PF00288 GHMP kinases N terminal domain DDI_RS09625 PF08544 GHMP kinases C terminal DDI_RS09630 PF14572 Phosphoribosyl synthetase-associated domain DDI_RS09630 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DDI_RS09635 PF10762 Protein of unknown function (DUF2583) DDI_RS09640 PF01195 Peptidyl-tRNA hydrolase DDI_RS09645 PF01926 50S ribosome-binding GTPase DDI_RS09645 PF06071 Protein of unknown function (DUF933) DDI_RS09655 PF18835 Beta helix repeat of Inulin fructotransferase DDI_RS09655 PF05048 Periplasmic copper-binding protein (NosD) DDI_RS09660 PF00294 pfkB family carbohydrate kinase DDI_RS09665 PF00251 Glycosyl hydrolases family 32 N-terminal domain DDI_RS09665 PF08244 Glycosyl hydrolases family 32 C terminal DDI_RS09675 PF00356 Bacterial regulatory proteins, lacI family DDI_RS09680 PF00270 DEAD/DEAH box helicase DDI_RS09680 PF03880 DbpA RNA binding domain DDI_RS09680 PF00271 Helicase conserved C-terminal domain DDI_RS09685 PF13538 UvrD-like helicase C-terminal domain DDI_RS09690 PF13361 UvrD-like helicase C-terminal domain DDI_RS09690 PF00580 UvrD/REP helicase N-terminal domain DDI_RS09690 PF12705 PD-(D/E)XK nuclease superfamily DDI_RS09695 PF17946 RecC C-terminal domain DDI_RS09715 PF03211 Pectate lyase DDI_RS09750 PF01266 FAD dependent oxidoreductase DDI_RS09755 PF04293 SpoVR like protein DDI_RS09760 PF07840 FadR C-terminal domain DDI_RS09760 PF00392 Bacterial regulatory proteins, gntR family DDI_RS09765 PF02600 Disulfide bond formation protein DsbB DDI_RS09770 PF03692 Putative zinc- or iron-chelating domain DDI_RS09775 PF01557 Fumarylacetoacetate (FAA) hydrolase family DDI_RS09780 PF05166 YcgL domain DDI_RS09785 PF03775 Septum formation inhibitor MinC, C-terminal domain DDI_RS09785 PF05209 Septum formation inhibitor MinC, N-terminal domain DDI_RS09790 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DDI_RS09795 PF03776 Septum formation topological specificity factor MinE DDI_RS09800 PF00570 HRDC domain DDI_RS09800 PF01612 3'-5' exonuclease DDI_RS09805 PF13193 AMP-binding enzyme C-terminal domain DDI_RS09805 PF00501 AMP-binding enzyme DDI_RS09810 PF03843 Outer membrane lipoprotein Slp family DDI_RS09815 PF00814 Glycoprotease family DDI_RS09820 PF13307 Helicase C-terminal domain DDI_RS09820 PF04851 Type III restriction enzyme, res subunit DDI_RS09825 PF01042 Endoribonuclease L-PSP DDI_RS09830 PF03701 Uncharacterised protein family (UPF0181) DDI_RS09835 PF00425 chorismate binding enzyme DDI_RS09835 PF04715 Anthranilate synthase component I, N terminal region DDI_RS09840 PF00293 NUDIX domain DDI_RS09845 PF03313 Serine dehydratase alpha chain DDI_RS09845 PF03315 Serine dehydratase beta chain DDI_RS09850 PF02203 Tar ligand binding domain homologue DDI_RS09850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS09850 PF00672 HAMP domain DDI_RS09855 PF03471 Transporter associated domain DDI_RS09855 PF03741 Integral membrane protein TerC family DDI_RS09860 PF03830 PTS system sorbose subfamily IIB component DDI_RS09860 PF03610 PTS system fructose IIA component DDI_RS09865 PF03609 PTS system sorbose-specific iic component DDI_RS09870 PF03613 PTS system mannose/fructose/sorbose family IID component DDI_RS09875 PF06173 Protein of unknown function (DUF986) DDI_RS09880 PF02659 Putative manganese efflux pump DDI_RS09885 PF13847 Methyltransferase domain DDI_RS09890 PF00313 'Cold-shock' DNA-binding domain DDI_RS09895 PF10736 Protein of unknown function (DUF2627) DDI_RS09900 PF03881 Fructosamine kinase DDI_RS09905 PF14002 YniB-like protein DDI_RS09910 PF07883 Cupin domain DDI_RS09915 PF04962 KduI/IolB family DDI_RS09925 PF06917 Periplasmic pectate lyase DDI_RS09930 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS09935 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS09940 PF00005 ABC transporter DDI_RS09940 PF17912 MalK OB fold domain DDI_RS09940 PF03459 TOBE domain DDI_RS09950 PF06178 Oligogalacturonate-specific porin protein (KdgM) DDI_RS09955 PF07859 alpha/beta hydrolase fold DDI_RS09955 PF13472 GDSL-like Lipase/Acylhydrolase family DDI_RS09960 PF04307 LexA-binding, inner membrane-associated putative hydrolase DDI_RS09965 PF00375 Sodium:dicarboxylate symporter family DDI_RS09970 PF04355 SmpA / OmlA family DDI_RS09975 PF02540 NAD synthase DDI_RS09980 PF00892 EamA-like transporter family DDI_RS09985 PF11756 Nitrous oxide-stimulated promoter DDI_RS09990 PF00216 Bacterial DNA-binding protein DDI_RS09995 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DDI_RS09995 PF01588 Putative tRNA binding domain DDI_RS09995 PF03484 tRNA synthetase B5 domain DDI_RS09995 PF03483 B3/4 domain DDI_RS09995 PF03147 Ferredoxin-fold anticodon binding domain DDI_RS10000 PF01409 tRNA synthetases class II core domain (F) DDI_RS10000 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DDI_RS10005 PF00453 Ribosomal protein L20 DDI_RS10010 PF01632 Ribosomal protein L35 DDI_RS10015 PF05198 Translation initiation factor IF-3, N-terminal domain DDI_RS10015 PF00707 Translation initiation factor IF-3, C-terminal domain DDI_RS10020 PF02824 TGS domain DDI_RS10020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDI_RS10020 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDI_RS10020 PF03129 Anticodon binding domain DDI_RS10025 PF13974 YebO-like protein DDI_RS10030 PF09339 IclR helix-turn-helix domain DDI_RS10030 PF01614 Bacterial transcriptional regulator DDI_RS10035 PF14583 Oligogalacturonate lyase DDI_RS10040 PF01435 Peptidase family M48 DDI_RS10045 PF03707 Bacterial signalling protein N terminal repeat DDI_RS10045 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS10045 PF00563 EAL domain DDI_RS10050 PF00180 Isocitrate/isopropylmalate dehydrogenase DDI_RS10060 PF00293 NUDIX domain DDI_RS10070 PF04356 Protein of unknown function (DUF489) DDI_RS10075 PF00206 Lyase DDI_RS10075 PF08328 Adenylosuccinate lyase C-terminal DDI_RS10080 PF00072 Response regulator receiver domain DDI_RS10080 PF00486 Transcriptional regulatory protein, C terminal DDI_RS10085 PF08918 PhoQ Sensor DDI_RS10085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS10090 PF08007 Cupin superfamily protein DDI_RS10095 PF01546 Peptidase family M20/M25/M40 DDI_RS10095 PF07687 Peptidase dimerisation domain DDI_RS10105 PF02421 Ferrous iron transport protein B DDI_RS10105 PF17910 FeoB cytosolic helical domain DDI_RS10105 PF07664 Ferrous iron transport protein B C terminus DDI_RS10105 PF07670 Nucleoside recognition DDI_RS10145 PF01381 Helix-turn-helix DDI_RS10165 PF13358 DDE superfamily endonuclease DDI_RS10165 PF13592 Winged helix-turn helix DDI_RS10185 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH DDI_RS10190 PF13495 Phage integrase, N-terminal SAM-like domain DDI_RS10190 PF00589 Phage integrase family DDI_RS10195 PF01381 Helix-turn-helix DDI_RS10205 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family DDI_RS10225 PF04829 Pre-toxin domain with VENN motif DDI_RS10225 PF13332 Hemagglutinin repeat DDI_RS10225 PF05594 Haemagluttinin repeat DDI_RS10230 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB DDI_RS10230 PF17287 POTRA domain DDI_RS10230 PF08479 POTRA domain, ShlB-type DDI_RS10240 PF04877 HrpZ DDI_RS10255 PF00263 Bacterial type II and III secretion system protein DDI_RS10255 PF03958 Bacterial type II/III secretion system short domain DDI_RS10285 PF13406 Transglycosylase SLT domain DDI_RS10300 PF01514 Secretory protein of YscJ/FliF family DDI_RS10315 PF02954 Bacterial regulatory protein, Fis family DDI_RS10315 PF00158 Sigma-54 interaction domain DDI_RS10320 PF00072 Response regulator receiver domain DDI_RS10320 PF00196 Bacterial regulatory proteins, luxR family DDI_RS10325 PF07730 Histidine kinase DDI_RS10325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS10330 PF08281 Sigma-70, region 4 DDI_RS10330 PF04542 Sigma-70 region 2 DDI_RS10340 PF00771 FHIPEP family DDI_RS10350 PF18269 T3SS EscN ATPase C-terminal domain DDI_RS10350 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDI_RS10350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDI_RS10365 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DDI_RS10370 PF00813 FliP family DDI_RS10375 PF01313 Bacterial export proteins, family 3 DDI_RS10385 PF01312 FlhB HrpN YscU SpaS Family DDI_RS10390 PF05992 SbmA/BacA-like family DDI_RS10395 PF00672 HAMP domain DDI_RS10395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS10395 PF02203 Tar ligand binding domain homologue DDI_RS10400 PF00701 Dihydrodipicolinate synthetase family DDI_RS10410 PF01266 FAD dependent oxidoreductase DDI_RS10415 PF01546 Peptidase family M20/M25/M40 DDI_RS10415 PF07687 Peptidase dimerisation domain DDI_RS10420 PF00106 short chain dehydrogenase DDI_RS10425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS10425 PF00005 ABC transporter DDI_RS10430 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS10430 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS10435 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS10440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS10445 PF07690 Major Facilitator Superfamily DDI_RS10450 PF00459 Inositol monophosphatase family DDI_RS10455 PF08220 DeoR-like helix-turn-helix domain DDI_RS10455 PF00455 DeoR C terminal sensor domain DDI_RS10460 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS10465 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS10475 PF00171 Aldehyde dehydrogenase family DDI_RS10480 PF00202 Aminotransferase class-III DDI_RS10485 PF00392 Bacterial regulatory proteins, gntR family DDI_RS10485 PF00155 Aminotransferase class I and II DDI_RS10490 PF08402 TOBE domain DDI_RS10490 PF00005 ABC transporter DDI_RS10495 PF01361 Tautomerase enzyme DDI_RS10505 PF01717 Cobalamin-independent synthase, Catalytic domain DDI_RS10505 PF08267 Cobalamin-independent synthase, N-terminal domain DDI_RS10510 PF13417 Glutathione S-transferase, N-terminal domain DDI_RS10520 PF01966 HD domain DDI_RS10540 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system DDI_RS10545 PF00465 Iron-containing alcohol dehydrogenase DDI_RS10550 PF00293 NUDIX domain DDI_RS10555 PF02665 Nitrate reductase gamma subunit DDI_RS10560 PF02613 Nitrate reductase delta subunit DDI_RS10565 PF13247 4Fe-4S dicluster domain DDI_RS10565 PF14711 Respiratory nitrate reductase beta C-terminal DDI_RS10570 PF14710 Respiratory nitrate reductase alpha N-terminal DDI_RS10570 PF00384 Molybdopterin oxidoreductase DDI_RS10570 PF01568 Molydopterin dinucleotide binding domain DDI_RS10575 PF03466 LysR substrate binding domain DDI_RS10575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS10580 PF00753 Metallo-beta-lactamase superfamily DDI_RS10585 PF07690 Major Facilitator Superfamily DDI_RS10590 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term DDI_RS10590 PF00672 HAMP domain DDI_RS10590 PF07730 Histidine kinase DDI_RS10590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS10595 PF00196 Bacterial regulatory proteins, luxR family DDI_RS10595 PF00072 Response regulator receiver domain DDI_RS10610 PF00595 PDZ domain DDI_RS10610 PF17804 Tail specific protease N-terminal domain DDI_RS10610 PF11818 C-terminal domain of tail specific protease (DUF3340) DDI_RS10610 PF03572 Peptidase family S41 DDI_RS10615 PF17516 ProQ C-terminal domain DDI_RS10615 PF04352 ProQ/FINO family DDI_RS10620 PF13185 GAF domain DDI_RS10625 PF04403 Paraquat-inducible protein A DDI_RS10630 PF02470 MlaD protein DDI_RS10635 PF01189 16S rRNA methyltransferase RsmB/F DDI_RS10635 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF DDI_RS10635 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF DDI_RS10640 PF07358 Protein of unknown function (DUF1482) DDI_RS10645 PF02203 Tar ligand binding domain homologue DDI_RS10645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS10645 PF00672 HAMP domain DDI_RS10670 PF01258 Prokaryotic dksA/traR C4-type zinc finger DDI_RS10675 PF05840 Bacteriophage replication gene A protein (GPA) DDI_RS10715 PF07484 Phage Tail Collar Domain DDI_RS10720 PF01713 Smr domain DDI_RS10725 PF07690 Major Facilitator Superfamily DDI_RS10735 PF07484 Phage Tail Collar Domain DDI_RS10740 PF02796 Helix-turn-helix domain of resolvase DDI_RS10740 PF00239 Resolvase, N terminal domain DDI_RS10745 PF07484 Phage Tail Collar Domain DDI_RS10750 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DDI_RS10790 PF04606 Ogr/Delta-like zinc finger DDI_RS10795 PF01979 Amidohydrolase family DDI_RS10800 PF13185 GAF domain DDI_RS10800 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS10800 PF00563 EAL domain DDI_RS10805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS10805 PF08447 PAS fold DDI_RS10815 PF00149 Calcineurin-like phosphoesterase DDI_RS10825 PF09383 NIL domain DDI_RS10825 PF00005 ABC transporter DDI_RS10830 PF00005 ABC transporter DDI_RS10830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS10835 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS10835 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS10840 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS10845 PF04752 ChaC-like protein DDI_RS10850 PF01699 Sodium/calcium exchanger protein DDI_RS10855 PF01740 STAS domain DDI_RS10855 PF00916 Sulfate permease family DDI_RS10865 PF00486 Transcriptional regulatory protein, C terminal DDI_RS10865 PF00072 Response regulator receiver domain DDI_RS10870 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS10870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS10870 PF00672 HAMP domain DDI_RS10880 PF00089 Trypsin DDI_RS10885 PF02652 L-lactate permease DDI_RS10890 PF02754 Cysteine-rich domain DDI_RS10895 PF13183 4Fe-4S dicluster domain DDI_RS10895 PF11870 Domain of unknown function (DUF3390) DDI_RS10895 PF02589 LUD domain DDI_RS10900 PF02589 LUD domain DDI_RS10905 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold DDI_RS10905 PF00271 Helicase conserved C-terminal domain DDI_RS10905 PF04408 Helicase associated domain (HA2) DDI_RS10905 PF11898 Domain of unknown function (DUF3418) DDI_RS10905 PF00270 DEAD/DEAH box helicase DDI_RS10910 PF02525 Flavodoxin-like fold DDI_RS10915 PF13617 YnbE-like lipoprotein DDI_RS10920 PF11739 Dicarboxylate transport DDI_RS10925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS10925 PF08447 PAS fold DDI_RS10955 PF01171 PP-loop family DDI_RS10965 PF01544 CorA-like Mg2+ transporter protein DDI_RS10970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS10975 PF00246 Zinc carboxypeptidase DDI_RS10980 PF08534 Redoxin DDI_RS10985 PF07690 Major Facilitator Superfamily DDI_RS10995 PF01804 Penicillin amidase DDI_RS11000 PF13302 Acetyltransferase (GNAT) domain DDI_RS11015 PF18024 Helix-turn-helix domain DDI_RS11015 PF00158 Sigma-54 interaction domain DDI_RS11025 PF00083 Sugar (and other) transporter DDI_RS11030 PF05128 Domain of unknown function (DUF697) DDI_RS11035 PF04317 YcjX-like family, DUF463 DDI_RS11040 PF04024 PspC domain DDI_RS11045 PF06667 Phage shock protein B DDI_RS11050 PF04012 PspA/IM30 family DDI_RS11055 PF02954 Bacterial regulatory protein, Fis family DDI_RS11055 PF00158 Sigma-54 interaction domain DDI_RS11060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS11065 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS11070 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS11070 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS11075 PF00005 ABC transporter DDI_RS11075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS11080 PF00005 ABC transporter DDI_RS11100 PF17876 Cold shock domain DDI_RS11100 PF00773 RNB domain DDI_RS11100 PF08206 Ribonuclease B OB domain DDI_RS11100 PF00575 S1 RNA binding domain DDI_RS11105 PF00248 Aldo/keto reductase family DDI_RS11110 PF02554 Carbon starvation protein CstA DDI_RS11110 PF13722 5TM C-terminal transporter carbon starvation CstA DDI_RS11115 PF03812 2-keto-3-deoxygluconate permease DDI_RS11120 PF00596 Class II Aldolase and Adducin N-terminal domain DDI_RS11125 PF05433 Glycine zipper 2TM domain DDI_RS11130 PF01253 Translation initiation factor SUI1 DDI_RS11135 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DDI_RS11140 PF18073 Rubredoxin metal binding domain DDI_RS11145 PF06305 Lipopolysaccharide assembly protein A domain DDI_RS11150 PF01569 PAP2 superfamily DDI_RS11155 PF00925 GTP cyclohydrolase II DDI_RS11160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS11165 PF00330 Aconitase family (aconitate hydratase) DDI_RS11165 PF00694 Aconitase C-terminal domain DDI_RS11170 PF00043 Glutathione S-transferase, C-terminal domain DDI_RS11170 PF02798 Glutathione S-transferase, N-terminal domain DDI_RS11175 PF08543 Phosphomethylpyrimidine kinase DDI_RS11180 PF00579 tRNA synthetases class I (W and Y) DDI_RS11185 PF01243 Pyridoxamine 5'-phosphate oxidase DDI_RS11185 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region DDI_RS11190 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme DDI_RS11195 PF03702 Anhydro-N-acetylmuramic acid kinase DDI_RS11200 PF05433 Glycine zipper 2TM domain DDI_RS11205 PF01047 MarR family DDI_RS11210 PF06945 Protein of unknown function (DUF1289) DDI_RS11215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDI_RS11220 PF00929 Exonuclease DDI_RS11225 PF00462 Glutaredoxin DDI_RS11230 PF00877 NlpC/P60 family DDI_RS11240 PF00356 Bacterial regulatory proteins, lacI family DDI_RS11250 PF00677 Lumazine binding domain DDI_RS11255 PF01554 MatE DDI_RS11270 PF00248 Aldo/keto reductase family DDI_RS11305 PF01844 HNH endonuclease DDI_RS11320 PF12706 Beta-lactamase superfamily domain DDI_RS11330 PF07338 Protein of unknown function (DUF1471) DDI_RS11335 PF06719 AraC-type transcriptional regulator N-terminus DDI_RS11335 PF12833 Helix-turn-helix domain DDI_RS11340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS11340 PF03466 LysR substrate binding domain DDI_RS11345 PF00756 Putative esterase DDI_RS11345 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DDI_RS11350 PF02264 LamB porin DDI_RS11350 PF11471 Maltoporin periplasmic N-terminal extension DDI_RS11355 PF00232 Glycosyl hydrolase family 1 DDI_RS11360 PF02378 Phosphotransferase system, EIIC DDI_RS11360 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDI_RS11360 PF00367 phosphotransferase system, EIIB DDI_RS11365 PF03123 CAT RNA binding domain DDI_RS11365 PF00874 PRD domain DDI_RS11370 PF02887 Pyruvate kinase, alpha/beta domain DDI_RS11370 PF00224 Pyruvate kinase, barrel domain DDI_RS11375 PF04728 Lipoprotein leucine-zipper DDI_RS11380 PF03734 L,D-transpeptidase catalytic domain DDI_RS11380 PF17969 L,D-transpeptidase C-terminal domain DDI_RS11380 PF01476 LysM domain DDI_RS11385 PF02657 Fe-S metabolism associated domain DDI_RS11390 PF00266 Aminotransferase class-V DDI_RS11395 PF01458 Uncharacterized protein family (UPF0051) DDI_RS11400 PF00005 ABC transporter DDI_RS11405 PF01458 Uncharacterized protein family (UPF0051) DDI_RS11410 PF01521 Iron-sulphur cluster biosynthesis DDI_RS11420 PF03061 Thioesterase superfamily DDI_RS11425 PF13183 4Fe-4S dicluster domain DDI_RS11425 PF01565 FAD binding domain DDI_RS11425 PF02913 FAD linked oxidases, C-terminal domain DDI_RS11430 PF01594 AI-2E family transporter DDI_RS11440 PF02896 PEP-utilising enzyme, TIM barrel domain DDI_RS11440 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DDI_RS11440 PF00391 PEP-utilising enzyme, mobile domain DDI_RS11445 PF03618 Kinase/pyrophosphorylase DDI_RS11450 PF04957 Ribosome modulation factor DDI_RS11455 PF03886 ABC-type transport auxiliary lipoprotein component DDI_RS11460 PF02470 MlaD protein DDI_RS11465 PF04403 Paraquat-inducible protein A DDI_RS11470 PF12848 ABC transporter DDI_RS11470 PF16326 ABC transporter C-terminal domain DDI_RS11470 PF00005 ABC transporter DDI_RS11475 PF02926 THUMP domain DDI_RS11475 PF10672 S-adenosylmethionine-dependent methyltransferase DDI_RS11475 PF01170 Putative RNA methylase family UPF0020 DDI_RS11480 PF03473 MOSC domain DDI_RS11480 PF00111 2Fe-2S iron-sulfur cluster binding domain DDI_RS11480 PF03476 MOSC N-terminal beta barrel domain DDI_RS11485 PF07126 Cell-division protein ZapC DDI_RS11490 PF01180 Dihydroorotate dehydrogenase DDI_RS11495 PF03358 NADPH-dependent FMN reductase DDI_RS11500 PF09084 NMT1/THI5 like DDI_RS11505 PF00296 Luciferase-like monooxygenase DDI_RS11510 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS11515 PF00005 ABC transporter DDI_RS11520 PF17432 Domain of unknown function (DUF3458_C) ARM repeats DDI_RS11520 PF01433 Peptidase family M1 domain DDI_RS11520 PF11940 Domain of unknown function (DUF3458) Ig-like fold DDI_RS11525 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DDI_RS11525 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DDI_RS11530 PF01336 OB-fold nucleic acid binding domain DDI_RS11530 PF00152 tRNA synthetases class II (D, K and N) DDI_RS11535 PF00267 Gram-negative porin DDI_RS11540 PF00267 Gram-negative porin DDI_RS11550 PF00155 Aminotransferase class I and II DDI_RS11555 PF00753 Metallo-beta-lactamase superfamily DDI_RS11560 PF05951 Bacterial protein of unknown function (DUF882) DDI_RS11565 PF01471 Putative peptidoglycan binding domain DDI_RS11565 PF03734 L,D-transpeptidase catalytic domain DDI_RS11570 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DDI_RS11585 PF00877 NlpC/P60 family DDI_RS11590 PF00005 ABC transporter DDI_RS11595 PF00255 Glutathione peroxidase DDI_RS11600 PF01032 FecCD transport family DDI_RS11610 PF02146 Sir2 family DDI_RS11615 PF02687 FtsX-like permease family DDI_RS11615 PF12704 MacB-like periplasmic core domain DDI_RS11620 PF00005 ABC transporter DDI_RS11625 PF02687 FtsX-like permease family DDI_RS11625 PF12704 MacB-like periplasmic core domain DDI_RS11630 PF02559 CarD-like/TRCF domain DDI_RS11630 PF00270 DEAD/DEAH box helicase DDI_RS11630 PF00271 Helicase conserved C-terminal domain DDI_RS11630 PF03461 TRCF domain DDI_RS11630 PF17757 UvrB interaction domain DDI_RS11635 PF12792 CSS motif domain associated with EAL DDI_RS11635 PF00563 EAL domain DDI_RS11640 PF00012 Hsp70 protein DDI_RS11645 PF00797 N-acetyltransferase DDI_RS11655 PF13802 Galactose mutarotase-like DDI_RS11655 PF17137 Domain of unknown function (DUF5110) DDI_RS11655 PF16338 Domain of unknown function (DUF4968) DDI_RS11655 PF01055 Glycosyl hydrolases family 31 DDI_RS11660 PF07690 Major Facilitator Superfamily DDI_RS11665 PF00356 Bacterial regulatory proteins, lacI family DDI_RS11670 PF05433 Glycine zipper 2TM domain DDI_RS11675 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS11680 PF05728 Uncharacterised protein family (UPF0227) DDI_RS11685 PF00933 Glycosyl hydrolase family 3 N terminal domain DDI_RS11690 PF01636 Phosphotransferase enzyme family DDI_RS11695 PF13036 Peptidoglycan-synthase activator LpoB DDI_RS11700 PF07233 Protein of unknown function (DUF1425) DDI_RS11705 PF01230 HIT domain DDI_RS11710 PF02615 Malate/L-lactate dehydrogenase DDI_RS11715 PF02378 Phosphotransferase system, EIIC DDI_RS11715 PF00367 phosphotransferase system, EIIB DDI_RS11720 PF01026 TatD related DNase DDI_RS11725 PF09115 DNA polymerase III, delta subunit, C terminal DDI_RS11730 PF02223 Thymidylate kinase DDI_RS11735 PF02618 YceG-like family DDI_RS11740 PF01063 Amino-transferase class IV DDI_RS11745 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS11745 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS11750 PF00550 Phosphopantetheine attachment site DDI_RS11760 PF00698 Acyl transferase domain DDI_RS11765 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DDI_RS11765 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DDI_RS11770 PF02504 Fatty acid synthesis protein DDI_RS11775 PF01783 Ribosomal L32p protein family DDI_RS11780 PF02620 Large ribosomal RNA subunit accumulation protein YceD DDI_RS11785 PF02545 Maf-like protein DDI_RS11790 PF00849 RNA pseudouridylate synthase DDI_RS11790 PF01479 S4 domain DDI_RS11795 PF10150 Ribonuclease E/G family DDI_RS11795 PF00575 S1 RNA binding domain DDI_RS11795 PF12111 Polyribonucleotide phosphorylase C terminal DDI_RS11805 PF01979 Amidohydrolase family DDI_RS11810 PF06183 DinI-like family DDI_RS11815 PF13991 BssS protein family DDI_RS11820 PF01292 Prokaryotic cytochrome b561 DDI_RS11825 PF04264 YceI-like domain DDI_RS11830 PF17773 UPF0176 acylphosphatase like domain DDI_RS11830 PF12368 Rhodanase C-terminal DDI_RS11830 PF00581 Rhodanese-like domain DDI_RS11835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDI_RS11840 PF03279 Bacterial lipid A biosynthesis acyltransferase DDI_RS11845 PF00535 Glycosyl transferase family 2 DDI_RS11850 PF04349 Periplasmic glucan biosynthesis protein, MdoG DDI_RS11865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS11865 PF02203 Tar ligand binding domain homologue DDI_RS11865 PF00672 HAMP domain DDI_RS11875 PF10753 Toxin GhoT_OrtT DDI_RS11880 PF06303 MatP N-terminal domain DDI_RS11880 PF17414 MatP C-terminal ribbon-helix-helix domain DDI_RS11885 PF13654 AAA domain DDI_RS11885 PF05362 Lon protease (S16) C-terminal proteolytic domain DDI_RS11890 PF07977 FabA-like domain DDI_RS11905 PF00672 HAMP domain DDI_RS11905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS11905 PF02203 Tar ligand binding domain homologue DDI_RS11915 PF02562 PhoH-like protein DDI_RS11925 PF02899 Phage integrase, N-terminal SAM-like domain DDI_RS11930 PF04539 Sigma-70 region 3 DDI_RS11930 PF04542 Sigma-70 region 2 DDI_RS11930 PF04545 Sigma-70, region 4 DDI_RS11945 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDI_RS11945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDI_RS11955 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DDI_RS11960 PF13847 Methyltransferase domain DDI_RS11965 PF00700 Bacterial flagellin C-terminal helical region DDI_RS11965 PF00669 Bacterial flagellin N-terminal helical region DDI_RS11970 PF07195 Flagellar hook-associated protein 2 C-terminus DDI_RS11970 PF02465 Flagellar hook-associated protein 2 N-terminus DDI_RS11975 PF02561 Flagellar protein FliS DDI_RS11980 PF05400 Flagellar protein FliT DDI_RS11985 PF02049 Flagellar hook-basal body complex protein FliE DDI_RS11990 PF01514 Secretory protein of YscJ/FliF family DDI_RS11990 PF08345 Flagellar M-ring protein C-terminal DDI_RS11995 PF14841 FliG middle domain DDI_RS11995 PF14842 FliG N-terminal domain DDI_RS11995 PF01706 FliG C-terminal domain DDI_RS12000 PF02108 Flagellar assembly protein FliH DDI_RS12005 PF18269 T3SS EscN ATPase C-terminal domain DDI_RS12005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDI_RS12010 PF02050 Flagellar FliJ protein DDI_RS12015 PF02120 Flagellar hook-length control protein FliK DDI_RS12020 PF03748 Flagellar basal body-associated protein FliL DDI_RS12025 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DDI_RS12025 PF02154 Flagellar motor switch protein FliM DDI_RS12030 PF16973 Flagellar motor switch protein FliN N-terminal DDI_RS12030 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DDI_RS12035 PF04347 Flagellar biosynthesis protein, FliO DDI_RS12040 PF00813 FliP family DDI_RS12045 PF01313 Bacterial export proteins, family 3 DDI_RS12050 PF01311 Bacterial export proteins, family 1 DDI_RS12055 PF00669 Bacterial flagellin N-terminal helical region DDI_RS12060 PF00460 Flagella basal body rod protein DDI_RS12060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DDI_RS12065 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DDI_RS12065 PF10135 Rod binding protein DDI_RS12070 PF02119 Flagellar P-ring protein DDI_RS12075 PF02107 Flagellar L-ring protein DDI_RS12080 PF00460 Flagella basal body rod protein DDI_RS12080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DDI_RS12085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DDI_RS12085 PF00460 Flagella basal body rod protein DDI_RS12090 PF07559 Flagellar basal body protein FlaE DDI_RS12090 PF00460 Flagella basal body rod protein DDI_RS12090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DDI_RS12095 PF13861 FlgD Tudor-like domain DDI_RS12095 PF13860 FlgD Ig-like domain DDI_RS12095 PF03963 Flagellar hook capping protein - N-terminal region DDI_RS12100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DDI_RS12100 PF00460 Flagella basal body rod protein DDI_RS12105 PF00460 Flagella basal body rod protein DDI_RS12110 PF17656 FlgA N-terminal domain DDI_RS12110 PF13144 Chaperone for flagella basal body P-ring formation DDI_RS12115 PF04316 Anti-sigma-28 factor, FlgM DDI_RS12130 PF00771 FHIPEP family DDI_RS12135 PF01312 FlhB HrpN YscU SpaS Family DDI_RS12140 PF04344 Chemotaxis phosphatase, CheZ DDI_RS12145 PF00072 Response regulator receiver domain DDI_RS12150 PF00072 Response regulator receiver domain DDI_RS12150 PF01339 CheB methylesterase DDI_RS12155 PF03705 CheR methyltransferase, all-alpha domain DDI_RS12155 PF01739 CheR methyltransferase, SAM binding domain DDI_RS12160 PF00672 HAMP domain DDI_RS12160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS12160 PF02203 Tar ligand binding domain homologue DDI_RS12165 PF01584 CheW-like domain DDI_RS12170 PF02895 Signal transducing histidine kinase, homodimeric domain DDI_RS12170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS12170 PF09078 CheY binding DDI_RS12170 PF01584 CheW-like domain DDI_RS12170 PF01627 Hpt domain DDI_RS12175 PF13677 Membrane MotB of proton-channel complex MotA/MotB DDI_RS12175 PF00691 OmpA family DDI_RS12180 PF01618 MotA/TolQ/ExbB proton channel family DDI_RS12185 PF05280 Flagellar transcriptional activator (FlhC) DDI_RS12190 PF05247 Flagellar transcriptional activator (FlhD) DDI_RS12200 PF00672 HAMP domain DDI_RS12200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS12200 PF02203 Tar ligand binding domain homologue DDI_RS12205 PF10781 Dextransucrase DSRB DDI_RS12210 PF01554 MatE DDI_RS12220 PF14600 Cellulose-binding domain DDI_RS12220 PF00150 Cellulase (glycosyl hydrolase family 5) DDI_RS12225 PF13229 Right handed beta helix region DDI_RS12265 PF01648 4'-phosphopantetheinyl transferase superfamily DDI_RS12265 PF17837 4'-phosphopantetheinyl transferase N-terminal domain DDI_RS12270 PF00698 Acyl transferase domain DDI_RS12275 PF00698 Acyl transferase domain DDI_RS12280 PF00698 Acyl transferase domain DDI_RS12280 PF03060 Nitronate monooxygenase DDI_RS12290 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS12290 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS12290 PF08659 KR domain DDI_RS12290 PF16197 Ketoacyl-synthetase C-terminal extension DDI_RS12290 PF00550 Phosphopantetheine attachment site DDI_RS12290 PF14765 Polyketide synthase dehydratase DDI_RS12290 PF00550 Phosphopantetheine attachment site DDI_RS12290 PF14765 Polyketide synthase dehydratase DDI_RS12290 PF08242 Methyltransferase domain DDI_RS12290 PF16197 Ketoacyl-synthetase C-terminal extension DDI_RS12290 PF08659 KR domain DDI_RS12290 PF08242 Methyltransferase domain DDI_RS12290 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS12290 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS12295 PF13193 AMP-binding enzyme C-terminal domain DDI_RS12295 PF00501 AMP-binding enzyme DDI_RS12295 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS12295 PF08659 KR domain DDI_RS12295 PF00550 Phosphopantetheine attachment site DDI_RS12295 PF14765 Polyketide synthase dehydratase DDI_RS12295 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS12295 PF00668 Condensation domain DDI_RS12295 PF16197 Ketoacyl-synthetase C-terminal extension DDI_RS12310 PF00501 AMP-binding enzyme DDI_RS12310 PF13193 AMP-binding enzyme C-terminal domain DDI_RS12310 PF00668 Condensation domain DDI_RS12310 PF16197 Ketoacyl-synthetase C-terminal extension DDI_RS12310 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS12310 PF14765 Polyketide synthase dehydratase DDI_RS12310 PF00550 Phosphopantetheine attachment site DDI_RS12310 PF08659 KR domain DDI_RS12310 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS12315 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS12315 PF14765 Polyketide synthase dehydratase DDI_RS12315 PF08659 KR domain DDI_RS12315 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS12315 PF16197 Ketoacyl-synthetase C-terminal extension DDI_RS12315 PF00550 Phosphopantetheine attachment site DDI_RS12315 PF00501 AMP-binding enzyme DDI_RS12315 PF13193 AMP-binding enzyme C-terminal domain DDI_RS12315 PF00668 Condensation domain DDI_RS12320 PF00296 Luciferase-like monooxygenase DDI_RS12325 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS12325 PF08659 KR domain DDI_RS12325 PF00550 Phosphopantetheine attachment site DDI_RS12325 PF14765 Polyketide synthase dehydratase DDI_RS12325 PF16197 Ketoacyl-synthetase C-terminal extension DDI_RS12325 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS12335 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS12335 PF00550 Phosphopantetheine attachment site DDI_RS12335 PF08659 KR domain DDI_RS12335 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS12335 PF14765 Polyketide synthase dehydratase DDI_RS12335 PF16197 Ketoacyl-synthetase C-terminal extension DDI_RS12340 PF00550 Phosphopantetheine attachment site DDI_RS12345 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS12345 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS12350 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal DDI_RS12350 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal DDI_RS12355 PF00378 Enoyl-CoA hydratase/isomerase DDI_RS12360 PF00378 Enoyl-CoA hydratase/isomerase DDI_RS12375 PF01066 CDP-alcohol phosphatidyltransferase DDI_RS12380 PF01541 GIY-YIG catalytic domain DDI_RS12380 PF02151 UvrB/uvrC motif DDI_RS12380 PF08459 UvrC Helix-hairpin-helix N-terminal DDI_RS12385 PF00196 Bacterial regulatory proteins, luxR family DDI_RS12385 PF00072 Response regulator receiver domain DDI_RS12390 PF10769 Protein of unknown function (DUF2594) DDI_RS12400 PF00324 Amino acid permease DDI_RS12405 PF03466 LysR substrate binding domain DDI_RS12405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS12425 PF00440 Bacterial regulatory proteins, tetR family DDI_RS12430 PF03033 Glycosyltransferase family 28 N-terminal domain DDI_RS12430 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase DDI_RS12440 PF00672 HAMP domain DDI_RS12440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS12440 PF02203 Tar ligand binding domain homologue DDI_RS12450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS12450 PF03466 LysR substrate binding domain DDI_RS12455 PF00155 Aminotransferase class I and II DDI_RS12460 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS12470 PF03358 NADPH-dependent FMN reductase DDI_RS12475 PF10414 Sirohaem synthase dimerisation region DDI_RS12475 PF14824 Sirohaem biosynthesis protein central DDI_RS12475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DDI_RS12480 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDI_RS12480 PF04324 BFD-like [2Fe-2S] binding domain DDI_RS12480 PF01568 Molydopterin dinucleotide binding domain DDI_RS12480 PF00384 Molybdopterin oxidoreductase DDI_RS12485 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DDI_RS12485 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS12485 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DDI_RS12485 PF04324 BFD-like [2Fe-2S] binding domain DDI_RS12485 PF13806 Rieske-like [2Fe-2S] domain DDI_RS12485 PF18267 Rubredoxin NAD+ reductase C-terminal domain DDI_RS12490 PF00005 ABC transporter DDI_RS12495 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS12505 PF08376 Nitrate and nitrite sensing DDI_RS12505 PF03861 ANTAR domain DDI_RS12515 PF00873 AcrB/AcrD/AcrF family DDI_RS12520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS12520 PF00529 HlyD membrane-fusion protein of T1SS DDI_RS12530 PF07690 Major Facilitator Superfamily DDI_RS12535 PF07859 alpha/beta hydrolase fold DDI_RS12540 PF04216 Protein involved in formate dehydrogenase formation DDI_RS12545 PF07690 Major Facilitator Superfamily DDI_RS12555 PF01292 Prokaryotic cytochrome b561 DDI_RS12560 PF13247 4Fe-4S dicluster domain DDI_RS12560 PF09163 Formate dehydrogenase N, transmembrane DDI_RS12565 PF01568 Molydopterin dinucleotide binding domain DDI_RS12565 PF00384 Molybdopterin oxidoreductase DDI_RS12565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDI_RS12575 PF00117 Glutamine amidotransferase class-I DDI_RS12575 PF00958 GMP synthase C terminal domain DDI_RS12575 PF02540 NAD synthase DDI_RS12580 PF10777 Inner membrane protein YlaC DDI_RS12585 PF07503 HypF finger DDI_RS12585 PF01300 Telomere recombination DDI_RS12585 PF17788 HypF Kae1-like domain DDI_RS12585 PF00708 Acylphosphatase DDI_RS12590 PF00586 AIR synthase related protein, N-terminal domain DDI_RS12590 PF02769 AIR synthase related protein, C-terminal domain DDI_RS12595 PF01924 Hydrogenase formation hypA family DDI_RS12600 PF01455 HupF/HypC family DDI_RS12605 PF02492 CobW/HypB/UreG, nucleotide-binding domain DDI_RS12610 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DDI_RS12615 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE DDI_RS12620 PF01750 Hydrogenase maturation protease DDI_RS12625 PF00374 Nickel-dependent hydrogenase DDI_RS12630 PF03916 Polysulphide reductase, NrfD DDI_RS12635 PF13247 4Fe-4S dicluster domain DDI_RS12640 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DDI_RS12640 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DDI_RS12645 PF00005 ABC transporter DDI_RS12645 PF12848 ABC transporter DDI_RS12650 PF02567 Phenazine biosynthesis-like protein DDI_RS12655 PF07731 Multicopper oxidase DDI_RS12655 PF07732 Multicopper oxidase DDI_RS12660 PF00361 Proton-conducting membrane transporter DDI_RS12665 PF00361 Proton-conducting membrane transporter DDI_RS12670 PF00361 Proton-conducting membrane transporter DDI_RS12670 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DDI_RS12675 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DDI_RS12680 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DDI_RS12685 PF12838 4Fe-4S dicluster domain DDI_RS12690 PF00146 NADH dehydrogenase DDI_RS12695 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DDI_RS12695 PF01568 Molydopterin dinucleotide binding domain DDI_RS12695 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DDI_RS12695 PF00384 Molybdopterin oxidoreductase DDI_RS12700 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DDI_RS12700 PF10531 SLBB domain DDI_RS12700 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DDI_RS12710 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit DDI_RS12710 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DDI_RS12715 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DDI_RS12720 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DDI_RS12725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS12725 PF03466 LysR substrate binding domain DDI_RS12730 PF00155 Aminotransferase class I and II DDI_RS12740 PF03600 Citrate transporter DDI_RS12740 PF02080 TrkA-C domain DDI_RS12745 PF13419 Haloacid dehalogenase-like hydrolase DDI_RS12750 PF03887 YfbU domain DDI_RS12755 PF04217 Protein of unknown function, DUF412 DDI_RS12765 PF00871 Acetokinase family DDI_RS12770 PF07085 DRTGG domain DDI_RS12770 PF01515 Phosphate acetyl/butaryl transferase DDI_RS12775 PF00293 NUDIX domain DDI_RS12780 PF12850 Calcineurin-like phosphoesterase superfamily domain DDI_RS12785 PF02798 Glutathione S-transferase, N-terminal domain DDI_RS12785 PF00043 Glutathione S-transferase, C-terminal domain DDI_RS12790 PF01370 NAD dependent epimerase/dehydratase family DDI_RS12790 PF08338 Domain of unknown function (DUF1731) DDI_RS12795 PF00005 ABC transporter DDI_RS12800 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS12805 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS12810 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS12815 PF02441 Flavoprotein DDI_RS12820 PF00156 Phosphoribosyl transferase domain DDI_RS12825 PF02674 Colicin V production protein DDI_RS12830 PF05036 Sporulation related domain DDI_RS12835 PF02875 Mur ligase family, glutamate ligase domain DDI_RS12835 PF08245 Mur ligase middle domain DDI_RS12840 PF17848 Acetyl-coA carboxylase zinc finger domain DDI_RS12840 PF01039 Carboxyl transferase domain DDI_RS12850 PF09335 SNARE associated Golgi protein DDI_RS12855 PF01416 tRNA pseudouridine synthase DDI_RS12860 PF02774 Semialdehyde dehydrogenase, dimerisation domain DDI_RS12860 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDI_RS12865 PF11890 Domain of unknown function (DUF3410) DDI_RS12865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDI_RS12865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDI_RS12870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS12870 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS12875 PF00486 Transcriptional regulatory protein, C terminal DDI_RS12875 PF00072 Response regulator receiver domain DDI_RS12890 PF01970 Tripartite tricarboxylate transporter TctA family DDI_RS12900 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS12900 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS12905 PF05430 S-adenosyl-L-methionine-dependent methyltransferase DDI_RS12905 PF01266 FAD dependent oxidoreductase DDI_RS12920 PF00171 Aldehyde dehydrogenase family DDI_RS12925 PF03466 LysR substrate binding domain DDI_RS12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS12930 PF08891 YfcL protein DDI_RS12935 PF04315 Elongation factor P hydroxylase DDI_RS12940 PF01925 Sulfite exporter TauE/SafE DDI_RS12945 PF03411 Penicillin-insensitive murein endopeptidase DDI_RS12950 PF01264 Chorismate synthase DDI_RS12955 PF05175 Methyltransferase small domain DDI_RS12960 PF01713 Smr domain DDI_RS12965 PF00300 Histidine phosphatase superfamily (branch 1) DDI_RS12970 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DDI_RS12970 PF00378 Enoyl-CoA hydratase/isomerase DDI_RS12970 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDI_RS12980 PF00108 Thiolase, N-terminal domain DDI_RS12980 PF02803 Thiolase, C-terminal domain DDI_RS12985 PF04175 Protein of unknown function (DUF406) DDI_RS12990 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) DDI_RS12995 PF06039 Malate:quinone oxidoreductase (Mqo) DDI_RS13000 PF04333 MlaA lipoprotein DDI_RS13015 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) DDI_RS13025 PF01497 Periplasmic binding protein DDI_RS13030 PF05977 Transmembrane secretion effector DDI_RS13035 PF01032 FecCD transport family DDI_RS13040 PF01032 FecCD transport family DDI_RS13045 PF00005 ABC transporter DDI_RS13055 PF00550 Phosphopantetheine attachment site DDI_RS13055 PF00668 Condensation domain DDI_RS13055 PF13193 AMP-binding enzyme C-terminal domain DDI_RS13055 PF00501 AMP-binding enzyme DDI_RS13060 PF03621 MbtH-like protein DDI_RS13065 PF00756 Putative esterase DDI_RS13065 PF11806 Domain of unknown function (DUF3327) DDI_RS13070 PF07715 TonB-dependent Receptor Plug Domain DDI_RS13070 PF00593 TonB dependent receptor DDI_RS13075 PF00425 chorismate binding enzyme DDI_RS13080 PF13193 AMP-binding enzyme C-terminal domain DDI_RS13080 PF00501 AMP-binding enzyme DDI_RS13085 PF00550 Phosphopantetheine attachment site DDI_RS13085 PF00857 Isochorismatase family DDI_RS13095 PF03061 Thioesterase superfamily DDI_RS13100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDI_RS13115 PF06750 Bacterial Peptidase A24 N-terminal domain DDI_RS13115 PF01478 Type IV leader peptidase family DDI_RS13120 PF04612 Type II secretion system (T2SS), protein M DDI_RS13125 PF12693 GspL periplasmic domain DDI_RS13125 PF05134 Type II secretion system (T2SS), protein L DDI_RS13130 PF03934 Type II secretion system (T2SS), protein K DDI_RS13135 PF07963 Prokaryotic N-terminal methylation motif DDI_RS13135 PF11612 Type II secretion system (T2SS), protein J DDI_RS13140 PF07963 Prokaryotic N-terminal methylation motif DDI_RS13140 PF02501 Type II secretion system (T2SS), protein I DDI_RS13145 PF07963 Prokaryotic N-terminal methylation motif DDI_RS13150 PF07963 Prokaryotic N-terminal methylation motif DDI_RS13150 PF08334 Type II secretion system (T2SS), protein G DDI_RS13155 PF00482 Type II secretion system (T2SS), protein F DDI_RS13160 PF00437 Type II/IV secretion system protein DDI_RS13165 PF00263 Bacterial type II and III secretion system protein DDI_RS13165 PF03958 Bacterial type II/III secretion system short domain DDI_RS13170 PF11356 Type II secretion system protein C DDI_RS13180 PF16537 Type II secretion system protein B DDI_RS13185 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) DDI_RS13190 PF00155 Aminotransferase class I and II DDI_RS13195 PF01063 Amino-transferase class IV DDI_RS13200 PF00924 Mechanosensitive ion channel DDI_RS13200 PF12794 Mechanosensitive ion channel inner membrane domain 1 DDI_RS13200 PF12795 Mechanosensitive ion channel porin domain DDI_RS13220 PF08007 Cupin superfamily protein DDI_RS13230 PF00356 Bacterial regulatory proteins, lacI family DDI_RS13235 PF02264 LamB porin DDI_RS13240 PF00367 phosphotransferase system, EIIB DDI_RS13240 PF02378 Phosphotransferase system, EIIC DDI_RS13245 PF08533 Beta-galactosidase C-terminal domain DDI_RS13245 PF02449 Beta-galactosidase DDI_RS13245 PF08532 Beta-galactosidase trimerisation domain DDI_RS13250 PF07745 Glycosyl hydrolase family 53 DDI_RS13255 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS13260 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS13265 PF13416 Bacterial extracellular solute-binding protein DDI_RS13270 PF00005 ABC transporter DDI_RS13270 PF17912 MalK OB fold domain DDI_RS13290 PF03211 Pectate lyase DDI_RS13295 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDI_RS13295 PF13378 Enolase C-terminal domain-like DDI_RS13300 PF08240 Alcohol dehydrogenase GroES-like domain DDI_RS13300 PF00107 Zinc-binding dehydrogenase DDI_RS13305 PF00083 Sugar (and other) transporter DDI_RS13305 PF07690 Major Facilitator Superfamily DDI_RS13310 PF00392 Bacterial regulatory proteins, gntR family DDI_RS13310 PF07729 FCD domain DDI_RS13315 PF01175 Urocanase Rossmann-like domain DDI_RS13315 PF17391 Urocanase N-terminal domain DDI_RS13315 PF17392 Urocanase C-terminal domain DDI_RS13320 PF00221 Aromatic amino acid lyase DDI_RS13335 PF07702 UTRA domain DDI_RS13335 PF00392 Bacterial regulatory proteins, gntR family DDI_RS13340 PF00221 Aromatic amino acid lyase DDI_RS13345 PF00005 ABC transporter DDI_RS13350 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS13355 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS13360 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS13365 PF05962 HutD DDI_RS13370 PF01979 Amidohydrolase family DDI_RS13385 PF01047 MarR family DDI_RS13390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS13390 PF03466 LysR substrate binding domain DDI_RS13395 PF13378 Enolase C-terminal domain-like DDI_RS13405 PF00106 short chain dehydrogenase DDI_RS13425 PF01979 Amidohydrolase family DDI_RS13445 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DDI_RS13445 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DDI_RS13455 PF01406 tRNA synthetases class I (C) catalytic domain DDI_RS13455 PF09190 DALR domain DDI_RS13465 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DDI_RS13470 PF00149 Calcineurin-like phosphoesterase DDI_RS13475 PF00731 AIR carboxylase DDI_RS13480 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DDI_RS13480 PF02222 ATP-grasp domain DDI_RS13490 PF03313 Serine dehydratase alpha chain DDI_RS13490 PF03315 Serine dehydratase beta chain DDI_RS13500 PF00005 ABC transporter DDI_RS13505 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS13510 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS13515 PF02503 Polyphosphate kinase middle domain DDI_RS13515 PF13089 Polyphosphate kinase N-terminal domain DDI_RS13515 PF13090 Polyphosphate kinase C-terminal domain 2 DDI_RS13515 PF17941 Polyphosphate kinase C-terminal domain 1 DDI_RS13520 PF02541 Ppx/GppA phosphatase family DDI_RS13525 PF11119 Protein of unknown function (DUF2633) DDI_RS13530 PF01258 Prokaryotic dksA/traR C4-type zinc finger DDI_RS13535 PF00582 Universal stress protein family DDI_RS13540 PF13811 Domain of unknown function (DUF4186) DDI_RS13555 PF01027 Inhibitor of apoptosis-promoting Bax1 DDI_RS13560 PF04358 DsrC like protein DDI_RS13565 PF00708 Acylphosphatase DDI_RS13570 PF08755 Hemimethylated DNA-binding protein YccV like DDI_RS13575 PF13380 CoA binding domain DDI_RS13580 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) DDI_RS13585 PF02142 MGS-like domain DDI_RS13590 PF13361 UvrD-like helicase C-terminal domain DDI_RS13590 PF00580 UvrD/REP helicase N-terminal domain DDI_RS13590 PF12462 DNA helicase IV / RNA helicase N terminal DDI_RS13595 PF03733 Inner membrane component domain DDI_RS13600 PF12805 FUSC-like inner membrane protein yccS DDI_RS13605 PF04994 TfoX C-terminal domain DDI_RS13605 PF04993 TfoX N-terminal domain DDI_RS13610 PF03846 Cell division inhibitor SulA DDI_RS13615 PF01389 OmpA-like transmembrane domain DDI_RS13615 PF00691 OmpA family DDI_RS13620 PF00248 Aldo/keto reductase family DDI_RS13625 PF01773 Na+ dependent nucleoside transporter N-terminus DDI_RS13625 PF07670 Nucleoside recognition DDI_RS13625 PF07662 Na+ dependent nucleoside transporter C-terminus DDI_RS13630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS13635 PF00873 AcrB/AcrD/AcrF family DDI_RS13640 PF00873 AcrB/AcrD/AcrF family DDI_RS13645 PF07690 Major Facilitator Superfamily DDI_RS13650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS13650 PF00672 HAMP domain DDI_RS13650 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS13655 PF00072 Response regulator receiver domain DDI_RS13655 PF00486 Transcriptional regulatory protein, C terminal DDI_RS13660 PF13409 Glutathione S-transferase, N-terminal domain DDI_RS13665 PF16325 Peptidase family U32 C-terminal domain DDI_RS13665 PF01136 Peptidase family U32 DDI_RS13670 PF06146 Phosphate-starvation-inducible E DDI_RS13680 PF03825 Nucleoside H+ symporter DDI_RS13690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDI_RS13690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDI_RS13695 PF00356 Bacterial regulatory proteins, lacI family DDI_RS13705 PF08543 Phosphomethylpyrimidine kinase DDI_RS13710 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS13715 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS13720 PF00005 ABC transporter DDI_RS13725 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS13740 PF00263 Bacterial type II and III secretion system protein DDI_RS13740 PF03958 Bacterial type II/III secretion system short domain DDI_RS13745 PF00437 Type II/IV secretion system protein DDI_RS13750 PF00482 Type II secretion system (T2SS), protein F DDI_RS13755 PF07963 Prokaryotic N-terminal methylation motif DDI_RS13755 PF08334 Type II secretion system (T2SS), protein G DDI_RS13765 PF11612 Type II secretion system (T2SS), protein J DDI_RS13765 PF07963 Prokaryotic N-terminal methylation motif DDI_RS13785 PF00544 Pectate lyase DDI_RS13815 PF00106 short chain dehydrogenase DDI_RS13840 PF03466 LysR substrate binding domain DDI_RS13840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS13880 PF01381 Helix-turn-helix DDI_RS13885 PF05284 Protein of unknown function (DUF736) DDI_RS13900 PF02195 ParB-like nuclease domain DDI_RS13905 PF06067 Domain of unknown function (DUF932) DDI_RS13920 PF04002 RadC-like JAB domain DDI_RS13970 PF00589 Phage integrase family DDI_RS13970 PF13356 Arm DNA-binding domain DDI_RS13975 PF00117 Glutamine amidotransferase class-I DDI_RS13975 PF00958 GMP synthase C terminal domain DDI_RS13975 PF02540 NAD synthase DDI_RS13980 PF00478 IMP dehydrogenase / GMP reductase domain DDI_RS13980 PF00571 CBS domain DDI_RS13985 PF13742 OB-fold nucleic acid binding domain DDI_RS13985 PF02601 Exonuclease VII, large subunit DDI_RS13990 PF01447 Thermolysin metallopeptidase, catalytic domain DDI_RS13990 PF02868 Thermolysin metallopeptidase, alpha-helical domain DDI_RS13990 PF16485 Protealysin propeptide DDI_RS14000 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DDI_RS14000 PF01926 50S ribosome-binding GTPase DDI_RS14005 PF13360 PQQ-like domain DDI_RS14010 PF09976 Tetratricopeptide repeat-like domain DDI_RS14015 PF13393 Histidyl-tRNA synthetase DDI_RS14015 PF03129 Anticodon binding domain DDI_RS14020 PF04551 GcpE protein DDI_RS14025 PF13464 Domain of unknown function (DUF4115) DDI_RS14035 PF04055 Radical SAM superfamily DDI_RS14040 PF00334 Nucleoside diphosphate kinase DDI_RS14045 PF00581 Rhodanese-like domain DDI_RS14050 PF14581 SseB protein C-terminal domain DDI_RS14050 PF07179 SseB protein N-terminal domain DDI_RS14055 PF12404 Peptidase DDI_RS14055 PF00883 Cytosol aminopeptidase family, catalytic domain DDI_RS14060 PF04384 Iron-sulphur cluster assembly DDI_RS14065 PF00111 2Fe-2S iron-sulfur cluster binding domain DDI_RS14070 PF00012 Hsp70 protein DDI_RS14075 PF07743 HSCB C-terminal oligomerisation domain DDI_RS14080 PF01521 Iron-sulphur cluster biosynthesis DDI_RS14085 PF01592 NifU-like N terminal domain DDI_RS14090 PF00266 Aminotransferase class-V DDI_RS14095 PF02082 Transcriptional regulator DDI_RS14100 PF00588 SpoU rRNA Methylase family DDI_RS14105 PF00459 Inositol monophosphatase family DDI_RS14115 PF01032 FecCD transport family DDI_RS14120 PF00005 ABC transporter DDI_RS14130 PF03824 High-affinity nickel-transport protein DDI_RS14135 PF06226 Protein of unknown function (DUF1007) DDI_RS14140 PF12832 MFS_1 like family DDI_RS14145 PF00464 Serine hydroxymethyltransferase DDI_RS14150 PF00970 Oxidoreductase FAD-binding domain DDI_RS14150 PF00175 Oxidoreductase NAD-binding domain DDI_RS14150 PF00042 Globin DDI_RS14160 PF00544 Pectate lyase DDI_RS14165 PF00544 Pectate lyase DDI_RS14175 PF01095 Pectinesterase DDI_RS14180 PF00543 Nitrogen regulatory protein P-II DDI_RS14185 PF00158 Sigma-54 interaction domain DDI_RS14185 PF00072 Response regulator receiver domain DDI_RS14190 PF13942 YfhG lipoprotein DDI_RS14195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS14195 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS14200 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal DDI_RS14200 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DDI_RS14200 PF02769 AIR synthase related protein, C-terminal domain DDI_RS14205 PF01464 Transglycosylase SLT domain DDI_RS14205 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS14210 PF14437 MafB19-like deaminase DDI_RS14215 PF13580 SIS domain DDI_RS14225 PF00664 ABC transporter transmembrane region DDI_RS14225 PF00005 ABC transporter DDI_RS14225 PF03412 Peptidase C39 family DDI_RS14230 PF00529 HlyD membrane-fusion protein of T1SS DDI_RS14235 PF03707 Bacterial signalling protein N terminal repeat DDI_RS14235 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS14235 PF00563 EAL domain DDI_RS14240 PF00563 EAL domain DDI_RS14245 PF12838 4Fe-4S dicluster domain DDI_RS14250 PF01648 4'-phosphopantetheinyl transferase superfamily DDI_RS14255 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ DDI_RS14260 PF11967 Recombination protein O N terminal DDI_RS14260 PF02565 Recombination protein O C terminal DDI_RS14265 PF07650 KH domain DDI_RS14265 PF01926 50S ribosome-binding GTPase DDI_RS14270 PF14622 Ribonuclease-III-like DDI_RS14270 PF00035 Double-stranded RNA binding motif DDI_RS14275 PF10502 Signal peptidase, peptidase S26 DDI_RS14280 PF00679 Elongation factor G C-terminus DDI_RS14280 PF00009 Elongation factor Tu GTP binding domain DDI_RS14280 PF03144 Elongation factor Tu domain 2 DDI_RS14280 PF06421 GTP-binding protein LepA C-terminus DDI_RS14290 PF17188 MucB/RseB C-terminal domain DDI_RS14290 PF03888 MucB/RseB N-terminal domain DDI_RS14295 PF03872 Anti sigma-E protein RseA, N-terminal domain DDI_RS14295 PF03873 Anti sigma-E protein RseA, C-terminal domain DDI_RS14300 PF04542 Sigma-70 region 2 DDI_RS14300 PF08281 Sigma-70, region 4 DDI_RS14305 PF00890 FAD binding domain DDI_RS14305 PF02910 Fumarate reductase flavoprotein C-term DDI_RS14310 PF05175 Methyltransferase small domain DDI_RS14315 PF00271 Helicase conserved C-terminal domain DDI_RS14315 PF00270 DEAD/DEAH box helicase DDI_RS14320 PF01228 Glycine radical DDI_RS14325 PF03167 Uracil DNA glycosylase superfamily DDI_RS14340 PF01053 Cys/Met metabolism PLP-dependent enzyme DDI_RS14345 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDI_RS14375 PF03547 Membrane transport protein DDI_RS14385 PF00224 Pyruvate kinase, barrel domain DDI_RS14385 PF00391 PEP-utilising enzyme, mobile domain DDI_RS14385 PF02887 Pyruvate kinase, alpha/beta domain DDI_RS14390 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DDI_RS14395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDI_RS14415 PF13358 DDE superfamily endonuclease DDI_RS14415 PF13592 Winged helix-turn helix DDI_RS14430 PF02378 Phosphotransferase system, EIIC DDI_RS14435 PF00005 ABC transporter DDI_RS14435 PF12857 TOBE-like domain DDI_RS14440 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS14445 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS14455 PF17853 GGDEF-like domain DDI_RS14455 PF05651 Putative sugar diacid recognition DDI_RS14455 PF13556 PucR C-terminal helix-turn-helix domain DDI_RS14460 PF00595 PDZ domain DDI_RS14465 PF13286 Phosphohydrolase-associated domain DDI_RS14465 PF01966 HD domain DDI_RS14470 PF01048 Phosphorylase superfamily DDI_RS14475 PF01497 Periplasmic binding protein DDI_RS14480 PF01521 Iron-sulphur cluster biosynthesis DDI_RS14485 PF00202 Aminotransferase class-III DDI_RS14490 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal DDI_RS14490 PF14814 Bifunctional transglycosylase second domain DDI_RS14490 PF00905 Penicillin binding protein transpeptidase domain DDI_RS14490 PF00912 Transglycosylase DDI_RS14495 PF00271 Helicase conserved C-terminal domain DDI_RS14495 PF00270 DEAD/DEAH box helicase DDI_RS14495 PF04408 Helicase associated domain (HA2) DDI_RS14495 PF08482 ATP-dependent helicase C-terminal DDI_RS14500 PF02834 LigT like Phosphoesterase DDI_RS14505 PF03749 Sugar fermentation stimulation protein RE domain DDI_RS14505 PF17746 SfsA N-terminal OB domain DDI_RS14510 PF01258 Prokaryotic dksA/traR C4-type zinc finger DDI_RS14515 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDI_RS14520 PF01743 Poly A polymerase head domain DDI_RS14520 PF12626 Polymerase A arginine-rich C-terminus DDI_RS14520 PF12627 Probable RNA and SrmB- binding site of polymerase A DDI_RS14525 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DDI_RS14530 PF02548 Ketopantoate hydroxymethyltransferase DDI_RS14535 PF02569 Pantoate-beta-alanine ligase DDI_RS14540 PF02261 Aspartate decarboxylase DDI_RS14545 PF01061 ABC-2 type transporter DDI_RS14550 PF00005 ABC transporter DDI_RS14555 PF00484 Carbonic anhydrase DDI_RS14560 PF00156 Phosphoribosyl transferase domain DDI_RS14575 PF12857 TOBE-like domain DDI_RS14575 PF00005 ABC transporter DDI_RS14580 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS14585 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) DDI_RS14590 PF17284 Spermidine synthase tetramerisation domain DDI_RS14595 PF02675 S-adenosylmethionine decarboxylase DDI_RS14605 PF07972 NrdI Flavodoxin like DDI_RS14610 PF02867 Ribonucleotide reductase, barrel domain DDI_RS14610 PF00317 Ribonucleotide reductase, all-alpha domain DDI_RS14610 PF08343 Ribonucleotide reductase N-terminal DDI_RS14615 PF00268 Ribonucleotide reductase, small chain DDI_RS14625 PF00929 Exonuclease DDI_RS14630 PF00075 RNase H DDI_RS14635 PF08241 Methyltransferase domain DDI_RS14640 PF00753 Metallo-beta-lactamase superfamily DDI_RS14640 PF16123 Hydroxyacylglutathione hydrolase C-terminus DDI_RS14645 PF01464 Transglycosylase SLT domain DDI_RS14645 PF01476 LysM domain DDI_RS14655 PF03372 Endonuclease/Exonuclease/phosphatase family DDI_RS14695 PF17871 AAA lid domain DDI_RS14695 PF02861 Clp amino terminal domain, pathogenicity island component DDI_RS14695 PF10431 C-terminal, D2-small domain, of ClpB protein DDI_RS14695 PF00004 ATPase family associated with various cellular activities (AAA) DDI_RS14695 PF07724 AAA domain (Cdc48 subfamily) DDI_RS14700 PF02578 Multi-copper polyphenol oxidoreductase laccase DDI_RS14705 PF01479 S4 domain DDI_RS14705 PF00849 RNA pseudouridylate synthase DDI_RS14710 PF13525 Outer membrane lipoprotein DDI_RS14715 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DDI_RS14720 PF00800 Prephenate dehydratase DDI_RS14720 PF01817 Chorismate mutase type II DDI_RS14725 PF01817 Chorismate mutase type II DDI_RS14725 PF02153 Prephenate dehydrogenase DDI_RS14730 PF00793 DAHP synthetase I family DDI_RS14740 PF01245 Ribosomal protein L19 DDI_RS14745 PF01746 tRNA (Guanine-1)-methyltransferase DDI_RS14750 PF01782 RimM N-terminal domain DDI_RS14750 PF05239 PRC-barrel domain DDI_RS14755 PF00886 Ribosomal protein S16 DDI_RS14760 PF02881 SRP54-type protein, helical bundle domain DDI_RS14760 PF02978 Signal peptide binding domain DDI_RS14760 PF00448 SRP54-type protein, GTPase domain DDI_RS14765 PF01578 Cytochrome C assembly protein DDI_RS14770 PF02664 S-Ribosylhomocysteinase (LuxS) DDI_RS14775 PF04262 Glutamate-cysteine ligase DDI_RS14780 PF09335 SNARE associated Golgi protein DDI_RS14785 PF13419 Haloacid dehalogenase-like hydrolase DDI_RS14810 PF02599 Global regulator protein family DDI_RS14815 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDI_RS14815 PF01411 tRNA synthetases class II (A) DDI_RS14815 PF02272 DHHA1 domain DDI_RS14820 PF02631 RecX family DDI_RS14825 PF00154 recA bacterial DNA recombination protein DDI_RS14830 PF02464 Competence-damaged protein DDI_RS14840 PF01292 Prokaryotic cytochrome b561 DDI_RS14850 PF00106 short chain dehydrogenase DDI_RS14855 PF00199 Catalase DDI_RS14855 PF06628 Catalase-related immune-responsive DDI_RS14865 PF13407 Periplasmic binding protein domain DDI_RS14870 PF00005 ABC transporter DDI_RS14875 PF02653 Branched-chain amino acid transport system / permease component DDI_RS14880 PF02653 Branched-chain amino acid transport system / permease component DDI_RS14885 PF02666 Phosphatidylserine decarboxylase DDI_RS14890 PF00171 Aldehyde dehydrogenase family DDI_RS14895 PF12833 Helix-turn-helix domain DDI_RS14900 PF07683 Cobalamin synthesis protein cobW C-terminal domain DDI_RS14900 PF02492 CobW/HypB/UreG, nucleotide-binding domain DDI_RS14905 PF04328 Selenoprotein, putative DDI_RS14910 PF13722 5TM C-terminal transporter carbon starvation CstA DDI_RS14910 PF02554 Carbon starvation protein CstA DDI_RS14915 PF04397 LytTr DNA-binding domain DDI_RS14915 PF00072 Response regulator receiver domain DDI_RS14920 PF07694 5TMR of 5TMR-LYT DDI_RS14920 PF06580 Histidine kinase DDI_RS14930 PF01546 Peptidase family M20/M25/M40 DDI_RS14930 PF07687 Peptidase dimerisation domain DDI_RS14935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS14940 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS14945 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS14945 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS14950 PF00005 ABC transporter DDI_RS14950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS14955 PF07687 Peptidase dimerisation domain DDI_RS14955 PF01546 Peptidase family M20/M25/M40 DDI_RS14965 PF02525 Flavodoxin-like fold DDI_RS14980 PF13193 AMP-binding enzyme C-terminal domain DDI_RS14980 PF00501 AMP-binding enzyme DDI_RS14985 PF03062 MBOAT, membrane-bound O-acyltransferase family DDI_RS15000 PF18395 Cas3 C-terminal domain DDI_RS15000 PF18019 HD domain DDI_RS15005 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) DDI_RS15020 PF09344 CT1975-like protein DDI_RS15030 PF01867 CRISPR associated protein Cas1 DDI_RS15035 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) DDI_RS15045 PF00665 Integrase core domain DDI_RS15045 PF02796 Helix-turn-helix domain of resolvase DDI_RS15060 PF00171 Aldehyde dehydrogenase family DDI_RS15065 PF00696 Amino acid kinase family DDI_RS15065 PF01472 PUA domain DDI_RS15070 PF07417 Sigma factor-binding transcriptional regulator Crl DDI_RS15075 PF17152 Periplasmic sensor domain DDI_RS15075 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS15080 PF13689 YfiR/HmsC-like DDI_RS15085 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) DDI_RS15090 PF00156 Phosphoribosyl transferase domain DDI_RS15100 PF01546 Peptidase family M20/M25/M40 DDI_RS15100 PF07687 Peptidase dimerisation domain DDI_RS15105 PF00817 impB/mucB/samB family DDI_RS15105 PF11798 IMS family HHH motif DDI_RS15105 PF11799 impB/mucB/samB family C-terminal domain DDI_RS15110 PF03734 L,D-transpeptidase catalytic domain DDI_RS15115 PF13230 Glutamine amidotransferases class-II DDI_RS15120 PF13580 SIS domain DDI_RS15125 PF09317 Domain of unknown function (DUF1974) DDI_RS15125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDI_RS15125 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDI_RS15130 PF01636 Phosphotransferase enzyme family DDI_RS15135 PF01008 Initiation factor 2 subunit family DDI_RS15140 PF03079 ARD/ARD' family DDI_RS15150 PF00596 Class II Aldolase and Adducin N-terminal domain DDI_RS15155 PF00155 Aminotransferase class I and II DDI_RS15160 PF00795 Carbon-nitrogen hydrolase DDI_RS15165 PF07687 Peptidase dimerisation domain DDI_RS15165 PF01546 Peptidase family M20/M25/M40 DDI_RS15170 PF00266 Aminotransferase class-V DDI_RS15175 PF00005 ABC transporter DDI_RS15180 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS15185 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS15210 PF01425 Amidase DDI_RS15225 PF01177 Asp/Glu/Hydantoin racemase DDI_RS15235 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DDI_RS15240 PF01425 Amidase DDI_RS15245 PF00005 ABC transporter DDI_RS15245 PF00571 CBS domain DDI_RS15250 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS15255 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DDI_RS15260 PF03591 AzlC protein DDI_RS15265 PF05437 Branched-chain amino acid transport protein (AzlD) DDI_RS15270 PF01047 MarR family DDI_RS15275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS15275 PF00529 HlyD membrane-fusion protein of T1SS DDI_RS15280 PF07690 Major Facilitator Superfamily DDI_RS15285 PF00588 SpoU rRNA Methylase family DDI_RS15285 PF08032 RNA 2'-O ribose methyltransferase substrate binding DDI_RS15290 PF00085 Thioredoxin DDI_RS15295 PF03942 DTW domain DDI_RS15300 PF13607 Succinyl-CoA ligase like flavodoxin domain DDI_RS15300 PF13380 CoA binding domain DDI_RS15300 PF00583 Acetyltransferase (GNAT) family DDI_RS15305 PF13091 PLD-like domain DDI_RS15310 PF10043 Predicted periplasmic lipoprotein (DUF2279) DDI_RS15315 PF00083 Sugar (and other) transporter DDI_RS15360 PF00005 ABC transporter DDI_RS15360 PF09383 NIL domain DDI_RS15365 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS15370 PF03180 NLPA lipoprotein DDI_RS15375 PF16358 RcsF lipoprotein DDI_RS15380 PF01980 tRNA-methyltransferase O DDI_RS15380 PF18389 TrmO C-terminal domain DDI_RS15385 PF04073 Aminoacyl-tRNA editing domain DDI_RS15385 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDI_RS15385 PF03129 Anticodon binding domain DDI_RS15390 PF00140 Sigma-70 factor, region 1.2 DDI_RS15390 PF04542 Sigma-70 region 2 DDI_RS15390 PF04539 Sigma-70 region 3 DDI_RS15390 PF04545 Sigma-70, region 4 DDI_RS15395 PF01551 Peptidase family M23 DDI_RS15395 PF01476 LysM domain DDI_RS15405 PF01142 tRNA pseudouridine synthase D (TruD) DDI_RS15410 PF02542 YgbB family DDI_RS15415 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DDI_RS15420 PF04977 Septum formation initiator DDI_RS15425 PF12084 Protein of unknown function (DUF3561) DDI_RS15435 PF00009 Elongation factor Tu GTP binding domain DDI_RS15440 PF01507 Phosphoadenosine phosphosulfate reductase family DDI_RS15445 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DDI_RS15445 PF14824 Sirohaem biosynthesis protein central DDI_RS15445 PF10414 Sirohaem synthase dimerisation region DDI_RS15450 PF01507 Phosphoadenosine phosphosulfate reductase family DDI_RS15455 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DDI_RS15455 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DDI_RS15460 PF00667 FAD binding domain DDI_RS15460 PF00175 Oxidoreductase NAD-binding domain DDI_RS15460 PF00258 Flavodoxin DDI_RS15475 PF01242 6-pyruvoyl tetrahydropterin synthase DDI_RS15480 PF04055 Radical SAM superfamily DDI_RS15490 PF07470 Glycosyl Hydrolase Family 88 DDI_RS15500 PF00113 Enolase, C-terminal TIM barrel domain DDI_RS15500 PF03952 Enolase, N-terminal domain DDI_RS15505 PF00117 Glutamine amidotransferase class-I DDI_RS15505 PF06418 CTP synthase N-terminus DDI_RS15510 PF03819 MazG nucleotide pyrophosphohydrolase domain DDI_RS15515 PF13291 ACT domain DDI_RS15515 PF04607 Region found in RelA / SpoT proteins DDI_RS15515 PF02824 TGS domain DDI_RS15520 PF01938 TRAM domain DDI_RS15520 PF05958 tRNA (Uracil-5-)-methyltransferase DDI_RS15525 PF01627 Hpt domain DDI_RS15525 PF00072 Response regulator receiver domain DDI_RS15525 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) DDI_RS15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS15525 PF00672 HAMP domain DDI_RS15525 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS15530 PF02595 Glycerate kinase family DDI_RS15535 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDI_RS15535 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DDI_RS15540 PF03328 HpcH/HpaI aldolase/citrate lyase family DDI_RS15545 PF13378 Enolase C-terminal domain-like DDI_RS15550 PF13378 Enolase C-terminal domain-like DDI_RS15550 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDI_RS15555 PF07690 Major Facilitator Superfamily DDI_RS15560 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DDI_RS15560 PF08666 SAF domain DDI_RS15565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS15565 PF08447 PAS fold DDI_RS15585 PF12843 Putative quorum-sensing-regulated virulence factor DDI_RS15590 PF12826 Helix-hairpin-helix motif DDI_RS15590 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DDI_RS15590 PF03120 NAD-dependent DNA ligase OB-fold domain DDI_RS15590 PF01653 NAD-dependent DNA ligase adenylation domain DDI_RS15590 PF00533 BRCA1 C Terminus (BRCT) domain DDI_RS15595 PF00294 pfkB family carbohydrate kinase DDI_RS15595 PF01467 Cytidylyltransferase-like DDI_RS15600 PF03710 Glutamate-ammonia ligase adenylyltransferase DDI_RS15600 PF08335 GlnD PII-uridylyltransferase DDI_RS15605 PF01928 CYTH domain DDI_RS15610 PF08239 Bacterial SH3 domain DDI_RS15615 PF12627 Probable RNA and SrmB- binding site of polymerase A DDI_RS15615 PF01966 HD domain DDI_RS15615 PF01743 Poly A polymerase head domain DDI_RS15620 PF02673 Bacitracin resistance protein BacA DDI_RS15625 PF02152 Dihydroneopterin aldolase DDI_RS15630 PF02660 Glycerol-3-phosphate acyltransferase DDI_RS15635 PF00672 HAMP domain DDI_RS15635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS15635 PF02203 Tar ligand binding domain homologue DDI_RS15640 PF00719 Inorganic pyrophosphatase DDI_RS15645 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like DDI_RS15650 PF04357 TamB, inner membrane protein subunit of TAM complex DDI_RS15655 PF07244 Surface antigen variable number repeat DDI_RS15655 PF17243 POTRA domain TamA domain 1 DDI_RS15655 PF01103 Surface antigen DDI_RS15660 PF01625 Peptide methionine sulfoxide reductase DDI_RS15670 PF01595 Cyclin M transmembrane N-terminal domain DDI_RS15670 PF03471 Transporter associated domain DDI_RS15670 PF00571 CBS domain DDI_RS15675 PF06526 Protein of unknown function (DUF1107) DDI_RS15680 PF00459 Inositol monophosphatase family DDI_RS15690 PF00149 Calcineurin-like phosphoesterase DDI_RS15690 PF02872 5'-nucleotidase, C-terminal domain DDI_RS15695 PF04405 Domain of Unknown function (DUF542) DDI_RS15695 PF01814 Hemerythrin HHE cation binding domain DDI_RS15700 PF10697 Protein of unknown function (DUF2502) DDI_RS15705 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DDI_RS15705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDI_RS15710 PF08525 Opacity-associated protein A N-terminal motif DDI_RS15710 PF04225 Opacity-associated protein A LysM-like domain DDI_RS15720 PF01281 Ribosomal protein L9, N-terminal domain DDI_RS15720 PF03948 Ribosomal protein L9, C-terminal domain DDI_RS15725 PF01084 Ribosomal protein S18 DDI_RS15730 PF00436 Single-strand binding protein family DDI_RS15735 PF01250 Ribosomal protein S6 DDI_RS15740 PF00326 Prolyl oligopeptidase family DDI_RS15745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS15745 PF00672 HAMP domain DDI_RS15745 PF02203 Tar ligand binding domain homologue DDI_RS15760 PF00588 SpoU rRNA Methylase family DDI_RS15760 PF08032 RNA 2'-O ribose methyltransferase substrate binding DDI_RS15765 PF08206 Ribonuclease B OB domain DDI_RS15765 PF00773 RNB domain DDI_RS15765 PF00575 S1 RNA binding domain DDI_RS15765 PF17876 Cold shock domain DDI_RS15765 PF08461 Ribonuclease R winged-helix domain DDI_RS15770 PF02082 Transcriptional regulator DDI_RS15775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS15775 PF02203 Tar ligand binding domain homologue DDI_RS15775 PF00672 HAMP domain DDI_RS15785 PF07969 Amidohydrolase family DDI_RS15790 PF00437 Type II/IV secretion system protein DDI_RS15795 PF01168 Alanine racemase, N-terminal domain DDI_RS15800 PF14748 Pyrroline-5-carboxylate reductase dimerisation DDI_RS15800 PF03807 NADP oxidoreductase coenzyme F420-dependent DDI_RS15805 PF02325 YGGT family DDI_RS15810 PF02594 Uncharacterised ACR, YggU family COG1872 DDI_RS15815 PF01725 Ham1 family DDI_RS15820 PF06969 HemN C-terminal domain DDI_RS15820 PF04055 Radical SAM superfamily DDI_RS15825 PF08085 Entericidin EcnA/B family DDI_RS15830 PF13673 Acetyltransferase (GNAT) domain DDI_RS15835 PF07690 Major Facilitator Superfamily DDI_RS15840 PF01553 Acyltransferase DDI_RS15840 PF13193 AMP-binding enzyme C-terminal domain DDI_RS15840 PF00501 AMP-binding enzyme DDI_RS15845 PF00232 Glycosyl hydrolase family 1 DDI_RS15850 PF00232 Glycosyl hydrolase family 1 DDI_RS15855 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDI_RS15855 PF00367 phosphotransferase system, EIIB DDI_RS15855 PF02378 Phosphotransferase system, EIIC DDI_RS15860 PF00874 PRD domain DDI_RS15860 PF03123 CAT RNA binding domain DDI_RS15870 PF00356 Bacterial regulatory proteins, lacI family DDI_RS15885 PF00392 Bacterial regulatory proteins, gntR family DDI_RS15885 PF07729 FCD domain DDI_RS15890 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDI_RS15895 PF00232 Glycosyl hydrolase family 1 DDI_RS15900 PF02378 Phosphotransferase system, EIIC DDI_RS15905 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DDI_RS15910 PF00356 Bacterial regulatory proteins, lacI family DDI_RS15915 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DDI_RS15915 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DDI_RS15920 PF03466 LysR substrate binding domain DDI_RS15920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS15930 PF00005 ABC transporter DDI_RS15930 PF08402 TOBE domain DDI_RS15940 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS15955 PF07702 UTRA domain DDI_RS15955 PF00392 Bacterial regulatory proteins, gntR family DDI_RS15970 PF03466 LysR substrate binding domain DDI_RS15970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS15975 PF02129 X-Pro dipeptidyl-peptidase (S15 family) DDI_RS15980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS15980 PF03466 LysR substrate binding domain DDI_RS15985 PF01207 Dihydrouridine synthase (Dus) DDI_RS15990 PF09583 Phage shock protein G (Phageshock_PspG) DDI_RS16000 PF00067 Cytochrome P450 DDI_RS16005 PF08240 Alcohol dehydrogenase GroES-like domain DDI_RS16005 PF00107 Zinc-binding dehydrogenase DDI_RS16010 PF00772 DnaB-like helicase N terminal domain DDI_RS16010 PF03796 DnaB-like helicase C terminal domain DDI_RS16015 PF01168 Alanine racemase, N-terminal domain DDI_RS16015 PF00842 Alanine racemase, C-terminal domain DDI_RS16025 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS16030 PF02413 Caudovirales tail fibre assembly protein, lambda gpK DDI_RS16035 PF07484 Phage Tail Collar Domain DDI_RS16150 PF04233 Phage Mu protein F like protein DDI_RS16185 PF01464 Transglycosylase SLT domain DDI_RS16185 PF14718 Soluble lytic murein transglycosylase L domain DDI_RS16235 PF13401 AAA domain DDI_RS16235 PF01471 Putative peptidoglycan binding domain DDI_RS16245 PF07352 Bacteriophage Mu Gam like protein DDI_RS16265 PF08765 Mor transcription activator family DDI_RS16270 PF00324 Amino acid permease DDI_RS16275 PF01037 Lrp/AsnC ligand binding domain DDI_RS16285 PF00155 Aminotransferase class I and II DDI_RS16295 PF09618 CRISPR-associated protein (Cas_Csy4) DDI_RS16300 PF09615 CRISPR-associated protein (Cas_Csy3) DDI_RS16305 PF09614 CRISPR-associated protein (Cas_Csy2) DDI_RS16310 PF09611 CRISPR-associated protein (Cas_Csy1) DDI_RS16320 PF01867 CRISPR associated protein Cas1 DDI_RS16330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS16330 PF02203 Tar ligand binding domain homologue DDI_RS16330 PF00672 HAMP domain DDI_RS16335 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS16335 PF00072 Response regulator receiver domain DDI_RS16340 PF17760 UvrA interaction domain DDI_RS16340 PF00005 ABC transporter DDI_RS16340 PF17755 UvrA DNA-binding domain DDI_RS16345 PF00436 Single-strand binding protein family DDI_RS16350 PF01613 Flavin reductase like domain DDI_RS16400 PF04717 Type VI secretion system, phage-baseplate injector DDI_RS16450 PF02463 RecF/RecN/SMC N terminal domain DDI_RS16455 PF00356 Bacterial regulatory proteins, lacI family DDI_RS16460 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS16465 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS16470 PF17912 MalK OB fold domain DDI_RS16470 PF00005 ABC transporter DDI_RS16475 PF07470 Glycosyl Hydrolase Family 88 DDI_RS16495 PF01869 BadF/BadG/BcrA/BcrD ATPase family DDI_RS16500 PF00005 ABC transporter DDI_RS16505 PF00950 ABC 3 transport family DDI_RS16510 PF01297 Zinc-uptake complex component A periplasmic DDI_RS16515 PF03641 Possible lysine decarboxylase DDI_RS16520 PF08220 DeoR-like helix-turn-helix domain DDI_RS16520 PF00455 DeoR C terminal sensor domain DDI_RS16525 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DDI_RS16530 PF17042 Nucleotide-binding C-terminal domain DDI_RS16530 PF07005 Sugar-binding N-terminal domain DDI_RS16535 PF00465 Iron-containing alcohol dehydrogenase DDI_RS16540 PF00701 Dihydrodipicolinate synthetase family DDI_RS16555 PF04074 YhcH/YjgK/YiaL DDI_RS16565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS16565 PF00672 HAMP domain DDI_RS16570 PF06062 Uncharacterised protein family (UPF0231) DDI_RS16575 PF06434 Aconitate hydratase 2 N-terminus DDI_RS16575 PF00330 Aconitase family (aconitate hydratase) DDI_RS16575 PF11791 Aconitate B N-terminal domain DDI_RS16585 PF03972 MmgE/PrpD family DDI_RS16595 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS16595 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDI_RS16600 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDI_RS16600 PF00364 Biotin-requiring enzyme DDI_RS16600 PF02817 e3 binding domain DDI_RS16605 PF00456 Transketolase, thiamine diphosphate binding domain DDI_RS16605 PF17831 Pyruvate dehydrogenase E1 component middle domain DDI_RS16610 PF00392 Bacterial regulatory proteins, gntR family DDI_RS16610 PF07729 FCD domain DDI_RS16615 PF00324 Amino acid permease DDI_RS16620 PF17113 Regulatory signalling modulator protein AmpE DDI_RS16625 PF01510 N-acetylmuramoyl-L-alanine amidase DDI_RS16635 PF03502 Nucleoside-specific channel-forming protein, Tsx DDI_RS16640 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DDI_RS16640 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DDI_RS16645 PF07963 Prokaryotic N-terminal methylation motif DDI_RS16650 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain DDI_RS16650 PF00437 Type II/IV secretion system protein DDI_RS16655 PF00482 Type II secretion system (T2SS), protein F DDI_RS16660 PF00478 IMP dehydrogenase / GMP reductase domain DDI_RS16665 PF01121 Dephospho-CoA kinase DDI_RS16670 PF07072 Cell division protein DDI_RS16675 PF03884 DNA gyrase inhibitor YacG DDI_RS16680 PF00293 NUDIX domain DDI_RS16685 PF07516 SecA Wing and Scaffold domain DDI_RS16685 PF02810 SEC-C motif DDI_RS16685 PF01043 SecA preprotein cross-linking domain DDI_RS16685 PF07517 SecA DEAD-like domain DDI_RS16690 PF06558 Secretion monitor precursor protein (SecM) DDI_RS16700 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase DDI_RS16705 PF12327 FtsZ family, C-terminal domain DDI_RS16705 PF00091 Tubulin/FtsZ family, GTPase domain DDI_RS16710 PF02491 SHS2 domain inserted in FTSA DDI_RS16715 PF03799 Cell division protein FtsQ DDI_RS16715 PF08478 POTRA domain, FtsQ-type DDI_RS16720 PF08245 Mur ligase middle domain DDI_RS16720 PF02875 Mur ligase family, glutamate ligase domain DDI_RS16720 PF01225 Mur ligase family, catalytic domain DDI_RS16725 PF03033 Glycosyltransferase family 28 N-terminal domain DDI_RS16725 PF04101 Glycosyltransferase family 28 C-terminal domain DDI_RS16730 PF01098 Cell cycle protein DDI_RS16735 PF08245 Mur ligase middle domain DDI_RS16735 PF02875 Mur ligase family, glutamate ligase domain DDI_RS16740 PF00953 Glycosyl transferase family 4 DDI_RS16740 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DDI_RS16745 PF01225 Mur ligase family, catalytic domain DDI_RS16745 PF02875 Mur ligase family, glutamate ligase domain DDI_RS16745 PF08245 Mur ligase middle domain DDI_RS16750 PF08245 Mur ligase middle domain DDI_RS16750 PF02875 Mur ligase family, glutamate ligase domain DDI_RS16750 PF01225 Mur ligase family, catalytic domain DDI_RS16755 PF00905 Penicillin binding protein transpeptidase domain DDI_RS16755 PF03717 Penicillin-binding Protein dimerisation domain DDI_RS16760 PF04999 Cell division protein FtsL DDI_RS16765 PF01795 MraW methylase family DDI_RS16770 PF02381 MraZ protein, putative antitoxin-like DDI_RS16775 PF06610 L-alanine exporter DDI_RS16780 PF00356 Bacterial regulatory proteins, lacI family DDI_RS16780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DDI_RS16785 PF10369 Small subunit of acetolactate synthase DDI_RS16790 PF00205 Thiamine pyrophosphate enzyme, central domain DDI_RS16790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDI_RS16790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDI_RS16795 PF00501 AMP-binding enzyme DDI_RS16800 PF08502 LeuA allosteric (dimerisation) domain DDI_RS16800 PF00682 HMGL-like DDI_RS16805 PF00180 Isocitrate/isopropylmalate dehydrogenase DDI_RS16810 PF00330 Aconitase family (aconitate hydratase) DDI_RS16815 PF00694 Aconitase C-terminal domain DDI_RS16835 PF01212 Beta-eliminating lyase DDI_RS16845 PF12793 Sugar transport-related sRNA regulator N-term DDI_RS16845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS16855 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS16860 PF00005 ABC transporter DDI_RS16870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDI_RS16870 PF00205 Thiamine pyrophosphate enzyme, central domain DDI_RS16870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDI_RS16875 PF01842 ACT domain DDI_RS16880 PF09335 SNARE associated Golgi protein DDI_RS16900 PF05638 Type VI secretion system effector, Hcp DDI_RS16905 PF00136 DNA polymerase family B DDI_RS16905 PF03104 DNA polymerase family B, exonuclease domain DDI_RS16910 PF00176 SNF2 family N-terminal domain DDI_RS16910 PF00271 Helicase conserved C-terminal domain DDI_RS16910 PF12137 RNA polymerase recycling family C-terminal DDI_RS16910 PF18339 RapA N-terminal Tudor like domain 1 DDI_RS16910 PF18337 RapA N-terminal Tudor like domain DDI_RS16915 PF00849 RNA pseudouridylate synthase DDI_RS16920 PF00226 DnaJ domain DDI_RS16920 PF05099 Tellurite resistance protein TerB DDI_RS16925 PF04453 LPS transport system D DDI_RS16925 PF03968 OstA-like protein DDI_RS16930 PF09312 SurA N-terminal domain DDI_RS16935 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DDI_RS16940 PF00398 Ribosomal RNA adenine dimethylase DDI_RS16945 PF04379 ApaG domain DDI_RS16950 PF00149 Calcineurin-like phosphoesterase DDI_RS16955 PF01757 Acyltransferase family DDI_RS16960 PF00186 Dihydrofolate reductase DDI_RS16965 PF12821 Threonine/Serine exporter, ThrE DDI_RS16970 PF06738 Putative threonine/serine exporter DDI_RS16975 PF01810 LysE type translocator DDI_RS16980 PF02142 MGS-like domain DDI_RS16980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDI_RS16980 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DDI_RS16985 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DDI_RS16985 PF00117 Glutamine amidotransferase class-I DDI_RS16990 PF05173 Dihydrodipicolinate reductase, C-terminus DDI_RS16990 PF01113 Dihydrodipicolinate reductase, N-terminus DDI_RS16995 PF01156 Inosine-uridine preferring nucleoside hydrolase DDI_RS17000 PF02401 LytB protein DDI_RS17005 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDI_RS17010 PF01252 Signal peptidase (SPase) II DDI_RS17015 PF06827 Zinc finger found in FPG and IleRS DDI_RS17015 PF00133 tRNA synthetases class I (I, L, M and V) DDI_RS17015 PF08264 Anticodon-binding domain of tRNA DDI_RS17020 PF06574 FAD synthetase DDI_RS17020 PF01687 Riboflavin kinase DDI_RS17030 PF01649 Ribosomal protein S20 DDI_RS17035 PF06965 Na+/H+ antiporter 1 DDI_RS17040 PF00226 DnaJ domain DDI_RS17040 PF00684 DnaJ central domain DDI_RS17040 PF01556 DnaJ C terminal domain DDI_RS17045 PF00012 Hsp70 protein DDI_RS17050 PF01184 GPR1/FUN34/yaaH family DDI_RS17055 PF07690 Major Facilitator Superfamily DDI_RS17060 PF00994 Probable molybdopterin binding domain DDI_RS17065 PF00923 Transaldolase/Fructose-6-phosphate aldolase DDI_RS17070 PF03883 Peroxide stress protein YaaA DDI_RS17075 PF00291 Pyridoxal-phosphate dependent enzyme DDI_RS17075 PF14821 Threonine synthase N terminus DDI_RS17080 PF08544 GHMP kinases C terminal DDI_RS17080 PF00288 GHMP kinases N terminal domain DDI_RS17085 PF13840 ACT domain DDI_RS17085 PF01842 ACT domain DDI_RS17085 PF03447 Homoserine dehydrogenase, NAD binding domain DDI_RS17085 PF00742 Homoserine dehydrogenase DDI_RS17085 PF00696 Amino acid kinase family DDI_RS17090 PF00588 SpoU rRNA Methylase family DDI_RS17095 PF00486 Transcriptional regulatory protein, C terminal DDI_RS17095 PF00072 Response regulator receiver domain DDI_RS17100 PF05981 CreA protein DDI_RS17105 PF12833 Helix-turn-helix domain DDI_RS17105 PF06445 GyrI-like small molecule binding domain DDI_RS17110 PF00300 Histidine phosphatase superfamily (branch 1) DDI_RS17115 PF01931 Protein of unknown function DUF84 DDI_RS17120 PF01371 Trp repressor protein DDI_RS17125 PF01464 Transglycosylase SLT domain DDI_RS17125 PF14718 Soluble lytic murein transglycosylase L domain DDI_RS17130 PF12848 ABC transporter DDI_RS17130 PF00005 ABC transporter DDI_RS17135 PF00672 HAMP domain DDI_RS17135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS17135 PF02203 Tar ligand binding domain homologue DDI_RS17140 PF01842 ACT domain DDI_RS17140 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDI_RS17140 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDI_RS17145 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DDI_RS17150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS17150 PF03466 LysR substrate binding domain DDI_RS17155 PF04402 Protein of unknown function (DUF541) DDI_RS17160 PF09339 IclR helix-turn-helix domain DDI_RS17160 PF01614 Bacterial transcriptional regulator DDI_RS17165 PF05552 Conserved TM helix DDI_RS17165 PF00924 Mechanosensitive ion channel DDI_RS17170 PF01116 Fructose-bisphosphate aldolase class-II DDI_RS17175 PF00162 Phosphoglycerate kinase DDI_RS17180 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DDI_RS17180 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DDI_RS17185 PF02780 Transketolase, C-terminal domain DDI_RS17185 PF02779 Transketolase, pyrimidine binding domain DDI_RS17185 PF00456 Transketolase, thiamine diphosphate binding domain DDI_RS17190 PF07690 Major Facilitator Superfamily DDI_RS17195 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DDI_RS17195 PF17944 Arginine decarboxylase C-terminal helical extension DDI_RS17195 PF17810 Arginine decarboxylase helical bundle domain DDI_RS17205 PF02772 S-adenosylmethionine synthetase, central domain DDI_RS17205 PF00438 S-adenosylmethionine synthetase, N-terminal domain DDI_RS17205 PF02773 S-adenosylmethionine synthetase, C-terminal domain DDI_RS17210 PF10263 SprT-like family DDI_RS17210 PF17283 SprT-like zinc ribbon domain DDI_RS17215 PF04231 Endonuclease I DDI_RS17220 PF04452 RNA methyltransferase DDI_RS17225 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain DDI_RS17225 PF02951 Prokaryotic glutathione synthetase, N-terminal domain DDI_RS17230 PF02622 Uncharacterized ACR, COG1678 DDI_RS17235 PF03652 Holliday junction resolvase DDI_RS17240 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain DDI_RS17245 PF01225 Mur ligase family, catalytic domain DDI_RS17245 PF02875 Mur ligase family, glutamate ligase domain DDI_RS17245 PF08245 Mur ligase middle domain DDI_RS17250 PF00709 Adenylosuccinate synthetase DDI_RS17255 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) DDI_RS17260 PF01145 SPFH domain / Band 7 family DDI_RS17265 PF12221 Bacterial membrane protein N terminal DDI_RS17265 PF01145 SPFH domain / Band 7 family DDI_RS17270 PF01926 50S ribosome-binding GTPase DDI_RS17270 PF13167 GTP-binding GTPase N-terminal DDI_RS17270 PF16360 GTP-binding GTPase Middle Region DDI_RS17275 PF17209 Hfq protein DDI_RS17285 PF08676 MutL C terminal dimerisation domain DDI_RS17285 PF01119 DNA mismatch repair protein, C-terminal domain DDI_RS17290 PF01520 N-acetylmuramoyl-L-alanine amidase DDI_RS17295 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DDI_RS17300 PF03853 YjeF-related protein N-terminus DDI_RS17300 PF01256 Carbohydrate kinase DDI_RS17305 PF08331 Domain of unknown function (DUF1730) DDI_RS17315 PF01050 Mannose-6-phosphate isomerase DDI_RS17315 PF00483 Nucleotidyl transferase DDI_RS17320 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDI_RS17320 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDI_RS17320 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDI_RS17320 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDI_RS17325 PF16363 GDP-mannose 4,6 dehydratase DDI_RS17330 PF01061 ABC-2 type transporter DDI_RS17335 PF00005 ABC transporter DDI_RS17340 PF01370 NAD dependent epimerase/dehydratase family DDI_RS17355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDI_RS17365 PF00005 ABC transporter DDI_RS17370 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS17375 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS17380 PF00106 short chain dehydrogenase DDI_RS17390 PF03466 LysR substrate binding domain DDI_RS17390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS17395 PF00155 Aminotransferase class I and II DDI_RS17400 PF03746 LamB/YcsF family DDI_RS17405 PF02626 Carboxyltransferase domain, subdomain A and B DDI_RS17420 PF00892 EamA-like transporter family DDI_RS17430 PF00296 Luciferase-like monooxygenase DDI_RS17435 PF00296 Luciferase-like monooxygenase DDI_RS17455 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS17460 PF00005 ABC transporter DDI_RS17465 PF02566 OsmC-like protein DDI_RS17470 PF01047 MarR family DDI_RS17475 PF03806 AbgT putative transporter family DDI_RS17480 PF01546 Peptidase family M20/M25/M40 DDI_RS17485 PF01546 Peptidase family M20/M25/M40 DDI_RS17485 PF07687 Peptidase dimerisation domain DDI_RS17490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS17490 PF03466 LysR substrate binding domain DDI_RS17495 PF02203 Tar ligand binding domain homologue DDI_RS17495 PF00672 HAMP domain DDI_RS17495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS17500 PF04891 NifQ DDI_RS17505 PF02579 Dinitrogenase iron-molybdenum cofactor DDI_RS17505 PF04055 Radical SAM superfamily DDI_RS17510 PF02954 Bacterial regulatory protein, Fis family DDI_RS17510 PF00158 Sigma-54 interaction domain DDI_RS17510 PF13185 GAF domain DDI_RS17515 PF00989 PAS fold DDI_RS17525 PF00258 Flavodoxin DDI_RS17535 PF00639 PPIC-type PPIASE domain DDI_RS17540 PF04319 NifZ domain DDI_RS17545 PF03206 Nitrogen fixation protein NifW DDI_RS17550 PF00682 HMGL-like DDI_RS17555 PF00266 Aminotransferase class-V DDI_RS17560 PF01592 NifU-like N terminal domain DDI_RS17560 PF01106 NifU-like domain DDI_RS17560 PF04324 BFD-like [2Fe-2S] binding domain DDI_RS17565 PF02579 Dinitrogenase iron-molybdenum cofactor DDI_RS17570 PF00148 Nitrogenase component 1 type Oxidoreductase DDI_RS17575 PF00148 Nitrogenase component 1 type Oxidoreductase DDI_RS17580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS17580 PF02203 Tar ligand binding domain homologue DDI_RS17580 PF00672 HAMP domain DDI_RS17590 PF07804 HipA-like C-terminal domain DDI_RS17590 PF13657 HipA N-terminal domain DDI_RS17600 PF02579 Dinitrogenase iron-molybdenum cofactor DDI_RS17605 PF06988 NifT/FixU protein DDI_RS17610 PF00148 Nitrogenase component 1 type Oxidoreductase DDI_RS17610 PF11844 Domain of unknown function (DUF3364) DDI_RS17615 PF00148 Nitrogenase component 1 type Oxidoreductase DDI_RS17620 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DDI_RS17630 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DDI_RS17630 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DDI_RS17630 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DDI_RS17630 PF10371 Domain of unknown function DDI_RS17630 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDI_RS17630 PF12838 4Fe-4S dicluster domain DDI_RS17695 PF00501 AMP-binding enzyme DDI_RS17695 PF13193 AMP-binding enzyme C-terminal domain DDI_RS17695 PF00668 Condensation domain DDI_RS17695 PF00550 Phosphopantetheine attachment site DDI_RS17695 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS17695 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS17695 PF14765 Polyketide synthase dehydratase DDI_RS17695 PF08659 KR domain DDI_RS17695 PF16197 Ketoacyl-synthetase C-terminal extension DDI_RS17700 PF00501 AMP-binding enzyme DDI_RS17700 PF00550 Phosphopantetheine attachment site DDI_RS17700 PF00668 Condensation domain DDI_RS17700 PF13193 AMP-binding enzyme C-terminal domain DDI_RS17705 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DDI_RS17710 PF00884 Sulfatase DDI_RS17710 PF12411 Choline sulfatase enzyme C terminal DDI_RS17715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS17715 PF03466 LysR substrate binding domain DDI_RS17720 PF00571 CBS domain DDI_RS17720 PF00005 ABC transporter DDI_RS17725 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS17740 PF00929 Exonuclease DDI_RS17745 PF03193 RsgA GTPase DDI_RS17750 PF02666 Phosphatidylserine decarboxylase DDI_RS17755 PF12794 Mechanosensitive ion channel inner membrane domain 1 DDI_RS17755 PF12795 Mechanosensitive ion channel porin domain DDI_RS17755 PF00924 Mechanosensitive ion channel DDI_RS17765 PF00152 tRNA synthetases class II (D, K and N) DDI_RS17770 PF00890 FAD binding domain DDI_RS17770 PF02910 Fumarate reductase flavoprotein C-term DDI_RS17775 PF13183 4Fe-4S dicluster domain DDI_RS17775 PF13085 2Fe-2S iron-sulfur cluster binding domain DDI_RS17780 PF02300 Fumarate reductase subunit C DDI_RS17785 PF02313 Fumarate reductase subunit D DDI_RS17795 PF09285 Elongation factor P, C-terminal DDI_RS17795 PF08207 Elongation factor P (EF-P) KOW-like domain DDI_RS17795 PF01132 Elongation factor P (EF-P) OB domain DDI_RS17800 PF04055 Radical SAM superfamily DDI_RS17805 PF13698 Domain of unknown function (DUF4156) DDI_RS17810 PF00342 Phosphoglucose isomerase DDI_RS17815 PF01842 ACT domain DDI_RS17815 PF00696 Amino acid kinase family DDI_RS17820 PF02690 Na+/Pi-cotransporter DDI_RS17825 PF00939 Sodium:sulfate symporter transmembrane region DDI_RS17840 PF02310 B12 binding domain DDI_RS17840 PF02574 Homocysteine S-methyltransferase DDI_RS17840 PF02607 B12 binding domain DDI_RS17840 PF00809 Pterin binding enzyme DDI_RS17840 PF02965 Vitamin B12 dependent methionine synthase, activation domain DDI_RS17845 PF09339 IclR helix-turn-helix domain DDI_RS17845 PF01614 Bacterial transcriptional regulator DDI_RS17850 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) DDI_RS17855 PF00463 Isocitrate lyase family DDI_RS17860 PF01274 Malate synthase DDI_RS17865 PF04204 Homoserine O-succinyltransferase DDI_RS17895 PF00132 Bacterial transferase hexapeptide (six repeats) DDI_RS17905 PF08501 Shikimate dehydrogenase substrate binding domain DDI_RS17905 PF01488 Shikimate / quinate 5-dehydrogenase DDI_RS17905 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DDI_RS17910 PF01300 Telomere recombination DDI_RS17915 PF01396 Topoisomerase DNA binding C4 zinc finger DDI_RS17920 PF04361 Protein of unknown function (DUF494) DDI_RS17925 PF02481 DNA recombination-mediator protein A DDI_RS17925 PF17782 DprA winged helix domain DDI_RS17930 PF01327 Polypeptide deformylase DDI_RS17935 PF00551 Formyl transferase DDI_RS17935 PF02911 Formyl transferase, C-terminal domain DDI_RS17940 PF01189 16S rRNA methyltransferase RsmB/F DDI_RS17940 PF01029 NusB family DDI_RS17945 PF02254 TrkA-N domain DDI_RS17945 PF02080 TrkA-C domain DDI_RS17950 PF01741 Large-conductance mechanosensitive channel, MscL DDI_RS17955 PF03889 Alternative ribosome-rescue factor A DDI_RS17960 PF09350 Domain of unknown function (DUF1992) DDI_RS17965 PF01196 Ribosomal protein L17 DDI_RS17970 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DDI_RS17970 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DDI_RS17970 PF01000 RNA polymerase Rpb3/RpoA insert domain DDI_RS17975 PF01479 S4 domain DDI_RS17975 PF00163 Ribosomal protein S4/S9 N-terminal domain DDI_RS17980 PF00411 Ribosomal protein S11 DDI_RS17985 PF00416 Ribosomal protein S13/S18 DDI_RS17990 PF00444 Ribosomal protein L36 DDI_RS17995 PF00344 SecY translocase DDI_RS18000 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DDI_RS18005 PF00327 Ribosomal protein L30p/L7e DDI_RS18010 PF03719 Ribosomal protein S5, C-terminal domain DDI_RS18010 PF00333 Ribosomal protein S5, N-terminal domain DDI_RS18015 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DDI_RS18020 PF00347 Ribosomal protein L6 DDI_RS18025 PF00410 Ribosomal protein S8 DDI_RS18030 PF00253 Ribosomal protein S14p/S29e DDI_RS18035 PF00673 ribosomal L5P family C-terminus DDI_RS18035 PF00281 Ribosomal protein L5 DDI_RS18040 PF00467 KOW motif DDI_RS18040 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DDI_RS18045 PF00238 Ribosomal protein L14p/L23e DDI_RS18050 PF00366 Ribosomal protein S17 DDI_RS18055 PF00831 Ribosomal L29 protein DDI_RS18060 PF00252 Ribosomal protein L16p/L10e DDI_RS18065 PF07650 KH domain DDI_RS18065 PF00189 Ribosomal protein S3, C-terminal domain DDI_RS18070 PF00237 Ribosomal protein L22p/L17e DDI_RS18075 PF00203 Ribosomal protein S19 DDI_RS18080 PF00181 Ribosomal Proteins L2, RNA binding domain DDI_RS18080 PF03947 Ribosomal Proteins L2, C-terminal domain DDI_RS18085 PF00276 Ribosomal protein L23 DDI_RS18090 PF00573 Ribosomal protein L4/L1 family DDI_RS18095 PF00297 Ribosomal protein L3 DDI_RS18100 PF00338 Ribosomal protein S10p/S20e DDI_RS18105 PF00210 Ferritin-like domain DDI_RS18110 PF04324 BFD-like [2Fe-2S] binding domain DDI_RS18115 PF03143 Elongation factor Tu C-terminal domain DDI_RS18115 PF00009 Elongation factor Tu GTP binding domain DDI_RS18115 PF03144 Elongation factor Tu domain 2 DDI_RS18120 PF03764 Elongation factor G, domain IV DDI_RS18120 PF00679 Elongation factor G C-terminus DDI_RS18120 PF03144 Elongation factor Tu domain 2 DDI_RS18120 PF00009 Elongation factor Tu GTP binding domain DDI_RS18120 PF14492 Elongation Factor G, domain II DDI_RS18125 PF00177 Ribosomal protein S7p/S5e DDI_RS18130 PF00164 Ribosomal protein S12/S23 DDI_RS18135 PF04077 DsrH like protein DDI_RS18140 PF02635 DsrE/DsrF-like family DDI_RS18145 PF02635 DsrE/DsrF-like family DDI_RS18150 PF13309 HTH domain DDI_RS18150 PF08348 YheO-like PAS domain DDI_RS18155 PF08019 Phosphoethanolamine transferase EptA/EptB DDI_RS18155 PF00884 Sulfatase DDI_RS18160 PF00072 Response regulator receiver domain DDI_RS18160 PF00486 Transcriptional regulatory protein, C terminal DDI_RS18165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS18165 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS18165 PF00672 HAMP domain DDI_RS18170 PF00005 ABC transporter DDI_RS18175 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS18185 PF00795 Carbon-nitrogen hydrolase DDI_RS18200 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase DDI_RS18200 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDI_RS18205 PF04102 SlyX DDI_RS18210 PF12833 Helix-turn-helix domain DDI_RS18210 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DDI_RS18215 PF01636 Phosphotransferase enzyme family DDI_RS18225 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDI_RS18230 PF09526 Probable metal-binding protein (DUF2387) DDI_RS18235 PF02254 TrkA-N domain DDI_RS18235 PF00999 Sodium/hydrogen exchanger family DDI_RS18240 PF02525 Flavodoxin-like fold DDI_RS18245 PF00005 ABC transporter DDI_RS18245 PF12848 ABC transporter DDI_RS18255 PF06794 Uncharacterised protein family (UPF0270) DDI_RS18260 PF00485 Phosphoribulokinase / Uridine kinase family DDI_RS18265 PF02566 OsmC-like protein DDI_RS18270 PF13545 Crp-like helix-turn-helix domain DDI_RS18270 PF00027 Cyclic nucleotide-binding domain DDI_RS18275 PF00202 Aminotransferase class-III DDI_RS18280 PF00117 Glutamine amidotransferase class-I DDI_RS18285 PF00072 Response regulator receiver domain DDI_RS18285 PF12833 Helix-turn-helix domain DDI_RS18295 PF00082 Subtilase family DDI_RS18300 PF00182 Chitinase class I DDI_RS18315 PF02931 Neurotransmitter-gated ion-channel ligand binding domain DDI_RS18325 PF00544 Pectate lyase DDI_RS18330 PF00544 Pectate lyase DDI_RS18340 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DDI_RS18345 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDI_RS18345 PF13378 Enolase C-terminal domain-like DDI_RS18350 PF00579 tRNA synthetases class I (W and Y) DDI_RS18355 PF13419 Haloacid dehalogenase-like hydrolase DDI_RS18360 PF00834 Ribulose-phosphate 3 epimerase family DDI_RS18365 PF02086 D12 class N6 adenine-specific DNA methyltransferase DDI_RS18370 PF05036 Sporulation related domain DDI_RS18375 PF01761 3-dehydroquinate synthase DDI_RS18380 PF01202 Shikimate kinase DDI_RS18385 PF03958 Bacterial type II/III secretion system short domain DDI_RS18385 PF00263 Bacterial type II and III secretion system protein DDI_RS18410 PF17092 Penicillin-binding protein OB-like domain DDI_RS18410 PF00912 Transglycosylase DDI_RS18410 PF00905 Penicillin binding protein transpeptidase domain DDI_RS18415 PF00293 NUDIX domain DDI_RS18420 PF07095 Intracellular growth attenuator protein IgaA DDI_RS18425 PF13419 Haloacid dehalogenase-like hydrolase DDI_RS18430 PF01479 S4 domain DDI_RS18440 PF01430 Hsp33 protein DDI_RS18445 PF01293 Phosphoenolpyruvate carboxykinase DDI_RS18450 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS18450 PF00672 HAMP domain DDI_RS18450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS18455 PF00072 Response regulator receiver domain DDI_RS18455 PF00486 Transcriptional regulatory protein, C terminal DDI_RS18460 PF01272 Transcription elongation factor, GreA/GreB, C-term DDI_RS18460 PF03449 Transcription elongation factor, N-terminal DDI_RS18475 PF17674 HHH domain DDI_RS18475 PF09371 Tex-like protein N-terminal domain DDI_RS18475 PF16921 Tex protein YqgF-like domain DDI_RS18475 PF00575 S1 RNA binding domain DDI_RS18480 PF00561 alpha/beta hydrolase fold DDI_RS18485 PF00156 Phosphoribosyl transferase domain DDI_RS18490 PF01521 Iron-sulphur cluster biosynthesis DDI_RS18490 PF01106 NifU-like domain DDI_RS18495 PF02446 4-alpha-glucanotransferase DDI_RS18500 PF00343 Carbohydrate phosphorylase DDI_RS18505 PF08220 DeoR-like helix-turn-helix domain DDI_RS18505 PF00455 DeoR C terminal sensor domain DDI_RS18510 PF01694 Rhomboid family DDI_RS18510 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease DDI_RS18515 PF00581 Rhodanese-like domain DDI_RS18520 PF01266 FAD dependent oxidoreductase DDI_RS18520 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DDI_RS18525 PF00343 Carbohydrate phosphorylase DDI_RS18530 PF00534 Glycosyl transferases group 1 DDI_RS18530 PF08323 Starch synthase catalytic domain DDI_RS18535 PF00483 Nucleotidyl transferase DDI_RS18540 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DDI_RS18540 PF18390 Glycogen debranching enzyme C-terminal domain DDI_RS18540 PF00128 Alpha amylase, catalytic domain DDI_RS18545 PF02806 Alpha amylase, C-terminal all-beta domain DDI_RS18545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DDI_RS18545 PF00128 Alpha amylase, catalytic domain DDI_RS18550 PF07694 5TMR of 5TMR-LYT DDI_RS18550 PF06580 Histidine kinase DDI_RS18555 PF00313 'Cold-shock' DNA-binding domain DDI_RS18560 PF01402 Ribbon-helix-helix protein, copG family DDI_RS18560 PF08753 NikR C terminal nickel binding domain DDI_RS18565 PF02774 Semialdehyde dehydrogenase, dimerisation domain DDI_RS18565 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDI_RS18570 PF01914 MarC family integral membrane protein DDI_RS18575 PF02447 GntP family permease DDI_RS18580 PF01202 Shikimate kinase DDI_RS18585 PF00356 Bacterial regulatory proteins, lacI family DDI_RS18585 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DDI_RS18595 PF02678 Pirin DDI_RS18595 PF17954 Quercetinase C-terminal cupin domain DDI_RS18605 PF02754 Cysteine-rich domain DDI_RS18605 PF13183 4Fe-4S dicluster domain DDI_RS18610 PF00890 FAD binding domain DDI_RS18615 PF01266 FAD dependent oxidoreductase DDI_RS18615 PF04324 BFD-like [2Fe-2S] binding domain DDI_RS18620 PF07690 Major Facilitator Superfamily DDI_RS18630 PF12146 Serine aminopeptidase, S33 DDI_RS18635 PF01810 LysE type translocator DDI_RS18640 PF01810 LysE type translocator DDI_RS18645 PF16124 RecQ zinc-binding DDI_RS18645 PF00271 Helicase conserved C-terminal domain DDI_RS18645 PF00270 DEAD/DEAH box helicase DDI_RS18645 PF09382 RQC domain DDI_RS18645 PF00570 HRDC domain DDI_RS18655 PF03061 Thioesterase superfamily DDI_RS18660 PF00892 EamA-like transporter family DDI_RS18665 PF05145 Transition state regulatory protein AbrB DDI_RS18670 PF01544 CorA-like Mg2+ transporter protein DDI_RS18675 PF00580 UvrD/REP helicase N-terminal domain DDI_RS18675 PF13361 UvrD-like helicase C-terminal domain DDI_RS18680 PF13419 Haloacid dehalogenase-like hydrolase DDI_RS18685 PF00589 Phage integrase family DDI_RS18685 PF02899 Phage integrase, N-terminal SAM-like domain DDI_RS18690 PF04340 Protein of unknown function, DUF484 DDI_RS18695 PF01678 Diaminopimelate epimerase DDI_RS18700 PF13627 Prokaryotic lipoprotein-attachment site DDI_RS18705 PF01491 Frataxin-like domain DDI_RS18710 PF12633 Adenylate cyclase NT domain DDI_RS18710 PF01295 Adenylate cyclase, class-I DDI_RS18715 PF03900 Porphobilinogen deaminase, C-terminal domain DDI_RS18715 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DDI_RS18720 PF02602 Uroporphyrinogen-III synthase HemD DDI_RS18725 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase DDI_RS18730 PF07219 HemY protein N-terminus DDI_RS18730 PF07719 Tetratricopeptide repeat DDI_RS18735 PF01546 Peptidase family M20/M25/M40 DDI_RS18735 PF07687 Peptidase dimerisation domain DDI_RS18740 PF00005 ABC transporter DDI_RS18745 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS18750 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS18755 PF00583 Acetyltransferase (GNAT) family DDI_RS18760 PF00206 Lyase DDI_RS18760 PF10397 Adenylosuccinate lyase C-terminus DDI_RS18770 PF00465 Iron-containing alcohol dehydrogenase DDI_RS18775 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS18800 PF00324 Amino acid permease DDI_RS18805 PF03808 Glycosyl transferase WecB/TagA/CpsF family DDI_RS18810 PF06899 WzyE protein, O-antigen assembly polymerase DDI_RS18815 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 DDI_RS18820 PF01943 Polysaccharide biosynthesis protein DDI_RS18825 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DDI_RS18835 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DDI_RS18835 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DDI_RS18835 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DDI_RS18840 PF02350 UDP-N-acetylglucosamine 2-epimerase DDI_RS18845 PF02706 Chain length determinant protein DDI_RS18850 PF00953 Glycosyl transferase family 4 DDI_RS18855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDI_RS18855 PF07498 Rho termination factor, N-terminal domain DDI_RS18855 PF07497 Rho termination factor, RNA-binding domain DDI_RS18860 PF00085 Thioredoxin DDI_RS18865 PF00270 DEAD/DEAH box helicase DDI_RS18865 PF00271 Helicase conserved C-terminal domain DDI_RS18870 PF02541 Ppx/GppA phosphatase family DDI_RS18875 PF00295 Glycosyl hydrolases family 28 DDI_RS18880 PF00295 Glycosyl hydrolases family 28 DDI_RS18885 PF00580 UvrD/REP helicase N-terminal domain DDI_RS18885 PF13361 UvrD-like helicase C-terminal domain DDI_RS18895 PF00171 Aldehyde dehydrogenase family DDI_RS18895 PF01619 Proline dehydrogenase DDI_RS18895 PF14850 DNA-binding domain of Proline dehydrogenase DDI_RS18895 PF18327 Proline utilization A proline dehydrogenase N-terminal domain DDI_RS18900 PF00474 Sodium:solute symporter family DDI_RS18905 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DDI_RS18905 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DDI_RS18910 PF03466 LysR substrate binding domain DDI_RS18910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS18925 PF00585 C-terminal regulatory domain of Threonine dehydratase DDI_RS18925 PF00291 Pyridoxal-phosphate dependent enzyme DDI_RS18930 PF00920 Dehydratase family DDI_RS18935 PF01063 Amino-transferase class IV DDI_RS18945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDI_RS18945 PF00205 Thiamine pyrophosphate enzyme, central domain DDI_RS18945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDI_RS18950 PF08046 IlvGEDA operon leader peptide DDI_RS18955 PF07690 Major Facilitator Superfamily DDI_RS18960 PF13335 Magnesium chelatase, subunit ChlI C-terminal DDI_RS18960 PF01078 Magnesium chelatase, subunit ChlI DDI_RS18965 PF04219 Protein of unknown function, DUF DDI_RS18970 PF03466 LysR substrate binding domain DDI_RS18970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS19015 PF01177 Asp/Glu/Hydantoin racemase DDI_RS19020 PF00593 TonB dependent receptor DDI_RS19020 PF07715 TonB-dependent Receptor Plug Domain DDI_RS19025 PF05958 tRNA (Uracil-5-)-methyltransferase DDI_RS19030 PF07226 Protein of unknown function (DUF1422) DDI_RS19035 PF00440 Bacterial regulatory proteins, tetR family DDI_RS19040 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS19040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDI_RS19045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS19045 PF03466 LysR substrate binding domain DDI_RS19050 PF00462 Glutaredoxin DDI_RS19050 PF08534 Redoxin DDI_RS19055 PF02219 Methylenetetrahydrofolate reductase DDI_RS19060 PF00742 Homoserine dehydrogenase DDI_RS19060 PF00696 Amino acid kinase family DDI_RS19060 PF03447 Homoserine dehydrogenase, NAD binding domain DDI_RS19065 PF01053 Cys/Met metabolism PLP-dependent enzyme DDI_RS19070 PF01340 Met Apo-repressor, MetJ DDI_RS19075 PF01197 Ribosomal protein L31 DDI_RS19080 PF18074 Primosomal protein N C-terminal domain DDI_RS19080 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DDI_RS19080 PF00271 Helicase conserved C-terminal domain DDI_RS19080 PF17764 3′ DNA-binding domain (3′BD) DDI_RS19080 PF00270 DEAD/DEAH box helicase DDI_RS19085 PF00356 Bacterial regulatory proteins, lacI family DDI_RS19090 PF05036 Sporulation related domain DDI_RS19095 PF00227 Proteasome subunit DDI_RS19100 PF00004 ATPase family associated with various cellular activities (AAA) DDI_RS19100 PF07724 AAA domain (Cdc48 subfamily) DDI_RS19100 PF10431 C-terminal, D2-small domain, of ClpB protein DDI_RS19105 PF01040 UbiA prenyltransferase family DDI_RS19110 PF03737 Aldolase/RraA DDI_RS19115 PF06005 Cell division protein ZapB DDI_RS19120 PF00230 Major intrinsic protein DDI_RS19125 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDI_RS19125 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDI_RS19130 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded DDI_RS19135 PF00175 Oxidoreductase NAD-binding domain DDI_RS19135 PF00970 Oxidoreductase FAD-binding domain DDI_RS19140 PF05656 Protein of unknown function (DUF805) DDI_RS19145 PF07305 Protein of unknown function (DUF1454) DDI_RS19150 PF00121 Triosephosphate isomerase DDI_RS19155 PF00245 Alkaline phosphatase DDI_RS19160 PF04371 Porphyromonas-type peptidyl-arginine deiminase DDI_RS19165 PF00795 Carbon-nitrogen hydrolase DDI_RS19170 PF00365 Phosphofructokinase DDI_RS19175 PF01545 Cation efflux family DDI_RS19175 PF16916 Dimerisation domain of Zinc Transporter DDI_RS19210 PF07813 LTXXQ motif family protein DDI_RS19215 PF00072 Response regulator receiver domain DDI_RS19215 PF00486 Transcriptional regulatory protein, C terminal DDI_RS19220 PF00672 HAMP domain DDI_RS19220 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS19220 PF16527 Two-component sensor protein CpxA, periplasmic domain DDI_RS19220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS19235 PF00588 SpoU rRNA Methylase family DDI_RS19245 PF03547 Membrane transport protein DDI_RS19250 PF03009 Glycerophosphoryl diester phosphodiesterase family DDI_RS19255 PF00005 ABC transporter DDI_RS19255 PF17912 MalK OB fold domain DDI_RS19260 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS19265 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS19270 PF13416 Bacterial extracellular solute-binding protein DDI_RS19275 PF00144 Beta-lactamase DDI_RS19280 PF02203 Tar ligand binding domain homologue DDI_RS19280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS19280 PF00672 HAMP domain DDI_RS19285 PF02203 Tar ligand binding domain homologue DDI_RS19285 PF00672 HAMP domain DDI_RS19285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS19290 PF00672 HAMP domain DDI_RS19290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS19290 PF02203 Tar ligand binding domain homologue DDI_RS19295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS19295 PF00672 HAMP domain DDI_RS19295 PF02203 Tar ligand binding domain homologue DDI_RS19325 PF00155 Aminotransferase class I and II DDI_RS19335 PF11862 Domain of unknown function (DUF3382) DDI_RS19335 PF02653 Branched-chain amino acid transport system / permease component DDI_RS19340 PF02653 Branched-chain amino acid transport system / permease component DDI_RS19345 PF13458 Periplasmic binding protein DDI_RS19350 PF12568 Acetyltransferase (GNAT) domain, PanZ DDI_RS19355 PF00140 Sigma-70 factor, region 1.2 DDI_RS19355 PF04542 Sigma-70 region 2 DDI_RS19355 PF04545 Sigma-70, region 4 DDI_RS19360 PF02687 FtsX-like permease family DDI_RS19360 PF18075 FtsX extracellular domain DDI_RS19365 PF00005 ABC transporter DDI_RS19370 PF02881 SRP54-type protein, helical bundle domain DDI_RS19370 PF02881 SRP54-type protein, helical bundle domain DDI_RS19370 PF00448 SRP54-type protein, GTPase domain DDI_RS19370 PF00448 SRP54-type protein, GTPase domain DDI_RS19380 PF06611 Protein of unknown function (DUF1145) DDI_RS19390 PF07947 YhhN family DDI_RS19395 PF01206 Sulfurtransferase TusA DDI_RS19400 PF02592 Putative vitamin uptake transporter DDI_RS19405 PF08786 DcrB DDI_RS19410 PF07690 Major Facilitator Superfamily DDI_RS19420 PF03631 Virulence factor BrkB DDI_RS19425 PF01361 Tautomerase enzyme DDI_RS19430 PF00294 pfkB family carbohydrate kinase DDI_RS19450 PF00675 Insulinase (Peptidase family M16) DDI_RS19450 PF05193 Peptidase M16 inactive domain DDI_RS19455 PF00375 Sodium:dicarboxylate symporter family DDI_RS19460 PF01270 Glycosyl hydrolases family 8 DDI_RS19470 PF13181 Tetratricopeptide repeat DDI_RS19470 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) DDI_RS19475 PF03170 Bacterial cellulose synthase subunit DDI_RS19480 PF07238 PilZ domain DDI_RS19480 PF00535 Glycosyl transferase family 2 DDI_RS19480 PF03552 Cellulose synthase DDI_RS19485 PF10609 NUBPL iron-transfer P-loop NTPase DDI_RS19505 PF00005 ABC transporter DDI_RS19505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS19510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS19510 PF00005 ABC transporter DDI_RS19515 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS19515 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS19520 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS19525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS19530 PF03390 2-hydroxycarboxylate transporter family DDI_RS19535 PF00072 Response regulator receiver domain DDI_RS19540 PF00989 PAS fold DDI_RS19540 PF17203 Single cache domain 3 DDI_RS19540 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DDI_RS19540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS19545 PF00939 Sodium:sulfate symporter transmembrane region DDI_RS19555 PF00011 Hsp20/alpha crystallin family DDI_RS19560 PF00011 Hsp20/alpha crystallin family DDI_RS19565 PF07119 Protein of unknown function (DUF1375) DDI_RS19570 PF07690 Major Facilitator Superfamily DDI_RS19570 PF00083 Sugar (and other) transporter DDI_RS19580 PF07338 Protein of unknown function (DUF1471) DDI_RS19585 PF07729 FCD domain DDI_RS19585 PF00392 Bacterial regulatory proteins, gntR family DDI_RS19590 PF03786 D-mannonate dehydratase (UxuA) DDI_RS19600 PF00582 Universal stress protein family DDI_RS19605 PF10625 Universal stress protein B (UspB) DDI_RS19610 PF01384 Phosphate transporter family DDI_RS19620 PF02463 RecF/RecN/SMC N terminal domain DDI_RS19640 PF08402 TOBE domain DDI_RS19640 PF00005 ABC transporter DDI_RS19645 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS19650 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS19660 PF00480 ROK family DDI_RS19685 PF13416 Bacterial extracellular solute-binding protein DDI_RS19690 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS19695 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS19705 PF07690 Major Facilitator Superfamily DDI_RS19710 PF03466 LysR substrate binding domain DDI_RS19710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS19720 PF00106 short chain dehydrogenase DDI_RS19735 PF00884 Sulfatase DDI_RS19735 PF08019 Phosphoethanolamine transferase EptA/EptB DDI_RS19740 PF03120 NAD-dependent DNA ligase OB-fold domain DDI_RS19740 PF01653 NAD-dependent DNA ligase adenylation domain DDI_RS19745 PF00625 Guanylate kinase DDI_RS19750 PF01192 RNA polymerase Rpb6 DDI_RS19755 PF13291 ACT domain DDI_RS19755 PF04607 Region found in RelA / SpoT proteins DDI_RS19755 PF02824 TGS domain DDI_RS19760 PF12105 SpoU, rRNA methylase, C-terminal DDI_RS19760 PF00588 SpoU rRNA Methylase family DDI_RS19765 PF17191 RecG wedge domain DDI_RS19765 PF00271 Helicase conserved C-terminal domain DDI_RS19765 PF00270 DEAD/DEAH box helicase DDI_RS19770 PF00860 Permease family DDI_RS19780 PF05170 AsmA family DDI_RS19785 PF00583 Acetyltransferase (GNAT) family DDI_RS19785 PF09500 Putative thioesterase (yiiD_Cterm) DDI_RS19790 PF02580 D-Tyr-tRNA(Tyr) deacylase DDI_RS19795 PF13419 Haloacid dehalogenase-like hydrolase DDI_RS19800 PF03144 Elongation factor Tu domain 2 DDI_RS19800 PF00009 Elongation factor Tu GTP binding domain DDI_RS19800 PF00679 Elongation factor G C-terminus DDI_RS19810 PF03951 Glutamine synthetase, beta-Grasp domain DDI_RS19810 PF00120 Glutamine synthetase, catalytic domain DDI_RS19815 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS19815 PF00989 PAS fold DDI_RS19815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS19820 PF02954 Bacterial regulatory protein, Fis family DDI_RS19820 PF00158 Sigma-54 interaction domain DDI_RS19820 PF00072 Response regulator receiver domain DDI_RS19830 PF06969 HemN C-terminal domain DDI_RS19830 PF04055 Radical SAM superfamily DDI_RS19835 PF04220 Der GTPase activator (YihI) DDI_RS19840 PF01926 50S ribosome-binding GTPase DDI_RS19845 PF01367 5'-3' exonuclease, C-terminal SAM fold DDI_RS19845 PF01612 3'-5' exonuclease DDI_RS19845 PF00476 DNA polymerase family A DDI_RS19845 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DDI_RS19850 PF01323 DSBA-like thioredoxin domain DDI_RS19855 PF01636 Phosphotransferase enzyme family DDI_RS19860 PF06288 Protein of unknown function (DUF1040) DDI_RS19865 PF12804 MobA-like NTP transferase domain DDI_RS19870 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DDI_RS19900 PF00356 Bacterial regulatory proteins, lacI family DDI_RS19905 PF00294 pfkB family carbohydrate kinase DDI_RS19910 PF13407 Periplasmic binding protein domain DDI_RS19915 PF02653 Branched-chain amino acid transport system / permease component DDI_RS19920 PF00005 ABC transporter DDI_RS19925 PF05025 RbsD / FucU transport protein family DDI_RS19930 PF04076 Bacterial OB fold (BOF) protein DDI_RS19935 PF00072 Response regulator receiver domain DDI_RS19935 PF00486 Transcriptional regulatory protein, C terminal DDI_RS19940 PF08521 Two-component sensor kinase N-terminal DDI_RS19940 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS19940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS19945 PF02705 K+ potassium transporter DDI_RS19950 PF07728 AAA domain (dynein-related subfamily) DDI_RS19950 PF12592 Protein of unknown function (DUF3763) DDI_RS19950 PF17868 AAA lid domain DDI_RS19955 PF05762 VWA domain containing CoxE-like protein DDI_RS19960 PF01037 Lrp/AsnC ligand binding domain DDI_RS19965 PF00258 Flavodoxin DDI_RS19970 PF01134 Glucose inhibited division protein A DDI_RS19970 PF13932 GidA associated domain DDI_RS19975 PF02527 rRNA small subunit methyltransferase G DDI_RS19980 PF03899 ATP synthase I chain DDI_RS19985 PF00119 ATP synthase A chain DDI_RS19990 PF00137 ATP synthase subunit C DDI_RS19995 PF00430 ATP synthase B/B' CF(0) DDI_RS20000 PF00213 ATP synthase delta (OSCP) subunit DDI_RS20005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDI_RS20005 PF00306 ATP synthase alpha/beta chain, C terminal domain DDI_RS20005 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDI_RS20010 PF00231 ATP synthase DDI_RS20015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDI_RS20015 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDI_RS20020 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DDI_RS20020 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DDI_RS20025 PF13229 Right handed beta helix region DDI_RS20030 PF12804 MobA-like NTP transferase domain DDI_RS20030 PF00132 Bacterial transferase hexapeptide (six repeats) DDI_RS20035 PF01380 SIS domain DDI_RS20060 PF00550 Phosphopantetheine attachment site DDI_RS20065 PF00550 Phosphopantetheine attachment site DDI_RS20075 PF00501 AMP-binding enzyme DDI_RS20075 PF13193 AMP-binding enzyme C-terminal domain DDI_RS20110 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS20110 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS20125 PF00109 Beta-ketoacyl synthase, N-terminal domain DDI_RS20125 PF02801 Beta-ketoacyl synthase, C-terminal domain DDI_RS20130 PF17158 Membrane-associated sensor, integral membrane domain DDI_RS20130 PF00990 Diguanylate cyclase, GGDEF domain DDI_RS20140 PF02374 Anion-transporting ATPase DDI_RS20140 PF17886 HSP20-like domain found in ArsA DDI_RS20150 PF12849 PBP superfamily domain DDI_RS20155 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS20160 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS20165 PF00005 ABC transporter DDI_RS20170 PF01895 PhoU domain DDI_RS20175 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDI_RS20185 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS20190 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS20195 PF13419 Haloacid dehalogenase-like hydrolase DDI_RS20200 PF00860 Permease family DDI_RS20205 PF01648 4'-phosphopantetheinyl transferase superfamily DDI_RS20210 PF13247 4Fe-4S dicluster domain DDI_RS20210 PF12800 4Fe-4S binding domain DDI_RS20215 PF13247 4Fe-4S dicluster domain DDI_RS20215 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DDI_RS20215 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS20220 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DDI_RS20225 PF00535 Glycosyl transferase family 2 DDI_RS20230 PF01370 NAD dependent epimerase/dehydratase family DDI_RS20230 PF02911 Formyl transferase, C-terminal domain DDI_RS20230 PF00551 Formyl transferase DDI_RS20235 PF01522 Polysaccharide deacetylase DDI_RS20240 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase DDI_RS20245 PF00892 EamA-like transporter family DDI_RS20250 PF00892 EamA-like transporter family DDI_RS20260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDI_RS20265 PF12706 Beta-lactamase superfamily domain DDI_RS20270 PF12833 Helix-turn-helix domain DDI_RS20270 PF12852 Cupin DDI_RS20275 PF01381 Helix-turn-helix DDI_RS20290 PF00440 Bacterial regulatory proteins, tetR family DDI_RS20295 PF00106 short chain dehydrogenase DDI_RS20305 PF12631 MnmE helical domain DDI_RS20305 PF10396 GTP-binding protein TrmE N-terminus DDI_RS20305 PF01926 50S ribosome-binding GTPase DDI_RS20310 PF02096 60Kd inner membrane protein DDI_RS20310 PF14849 YidC periplasmic domain DDI_RS20315 PF01809 Putative membrane protein insertion efficiency factor DDI_RS20320 PF00825 Ribonuclease P DDI_RS20325 PF00468 Ribosomal protein L34 DDI_RS20330 PF08299 Bacterial dnaA protein helix-turn-helix DDI_RS20330 PF11638 DnaA N-terminal domain DDI_RS20330 PF00308 Bacterial dnaA protein DDI_RS20335 PF02768 DNA polymerase III beta subunit, C-terminal domain DDI_RS20335 PF02767 DNA polymerase III beta subunit, central domain DDI_RS20335 PF00712 DNA polymerase III beta subunit, N-terminal domain DDI_RS20340 PF02463 RecF/RecN/SMC N terminal domain DDI_RS20345 PF00204 DNA gyrase B DDI_RS20345 PF00986 DNA gyrase B subunit, carboxyl terminus DDI_RS20345 PF18053 DNA gyrase B subunit insert domain DDI_RS20345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS20345 PF01751 Toprim domain DDI_RS20355 PF04445 Putative SAM-dependent methyltransferase DDI_RS20360 PF01432 Peptidase family M3 DDI_RS20370 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ DDI_RS20375 PF12706 Beta-lactamase superfamily domain DDI_RS20380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDI_RS20380 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDI_RS20390 PF00206 Lyase DDI_RS20390 PF10397 Adenylosuccinate lyase C-terminus DDI_RS20395 PF00392 Bacterial regulatory proteins, gntR family DDI_RS20395 PF07702 UTRA domain DDI_RS20405 PF03062 MBOAT, membrane-bound O-acyltransferase family DDI_RS20425 PF00266 Aminotransferase class-V DDI_RS20430 PF02515 CoA-transferase family III DDI_RS20435 PF00989 PAS fold DDI_RS20435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS20435 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS20440 PF02515 CoA-transferase family III DDI_RS20445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDI_RS20445 PF00205 Thiamine pyrophosphate enzyme, central domain DDI_RS20445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDI_RS20455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS20455 PF03466 LysR substrate binding domain DDI_RS20475 PF02685 Glucokinase DDI_RS20485 PF00296 Luciferase-like monooxygenase DDI_RS20490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS20490 PF00005 ABC transporter DDI_RS20495 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS20495 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS20500 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS20505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS20515 PF00155 Aminotransferase class I and II DDI_RS20525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDI_RS20525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDI_RS20530 PF00583 Acetyltransferase (GNAT) family DDI_RS20535 PF03352 Methyladenine glycosylase DDI_RS20540 PF01925 Sulfite exporter TauE/SafE DDI_RS20545 PF02091 Glycyl-tRNA synthetase alpha subunit DDI_RS20550 PF02092 Glycyl-tRNA synthetase beta subunit DDI_RS20550 PF05746 DALR anticodon binding domain DDI_RS20560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDI_RS20560 PF02785 Biotin carboxylase C-terminal domain DDI_RS20560 PF00364 Biotin-requiring enzyme DDI_RS20560 PF00364 Biotin-requiring enzyme DDI_RS20560 PF00289 Biotin carboxylase, N-terminal domain DDI_RS20560 PF02785 Biotin carboxylase C-terminal domain DDI_RS20560 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDI_RS20560 PF00289 Biotin carboxylase, N-terminal domain DDI_RS20575 PF08402 TOBE domain DDI_RS20575 PF00005 ABC transporter DDI_RS20590 PF11254 Protein of unknown function (DUF3053) DDI_RS20595 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDI_RS20595 PF02378 Phosphotransferase system, EIIC DDI_RS20595 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDI_RS20600 PF08125 Mannitol dehydrogenase C-terminal domain DDI_RS20600 PF01232 Mannitol dehydrogenase Rossmann domain DDI_RS20605 PF05068 Mannitol repressor DDI_RS20610 PF00672 HAMP domain DDI_RS20610 PF02203 Tar ligand binding domain homologue DDI_RS20610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DDI_RS20615 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DDI_RS20615 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DDI_RS20620 PF02634 FdhD/NarQ family DDI_RS20625 PF00171 Aldehyde dehydrogenase family DDI_RS20630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDI_RS20630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDI_RS20645 PF13407 Periplasmic binding protein domain DDI_RS20650 PF00005 ABC transporter DDI_RS20655 PF02653 Branched-chain amino acid transport system / permease component DDI_RS20660 PF12833 Helix-turn-helix domain DDI_RS20670 PF02583 Metal-sensitive transcriptional repressor DDI_RS20675 PF03824 High-affinity nickel-transport protein DDI_RS20685 PF00764 Arginosuccinate synthase DDI_RS20690 PF01047 MarR family DDI_RS20695 PF00892 EamA-like transporter family DDI_RS20700 PF04227 Indigoidine synthase A like protein DDI_RS20705 PF13419 Haloacid dehalogenase-like hydrolase DDI_RS20710 PF13193 AMP-binding enzyme C-terminal domain DDI_RS20710 PF00501 AMP-binding enzyme DDI_RS20710 PF00668 Condensation domain DDI_RS20710 PF00550 Phosphopantetheine attachment site DDI_RS20745 PF00005 ABC transporter DDI_RS20750 PF12704 MacB-like periplasmic core domain DDI_RS20750 PF00005 ABC transporter DDI_RS20750 PF02687 FtsX-like permease family DDI_RS20755 PF00072 Response regulator receiver domain DDI_RS20755 PF00158 Sigma-54 interaction domain DDI_RS20755 PF02954 Bacterial regulatory protein, Fis family DDI_RS20760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDI_RS20760 PF00512 His Kinase A (phospho-acceptor) domain DDI_RS20765 PF01648 4'-phosphopantetheinyl transferase superfamily DDI_RS20790 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DDI_RS20790 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DDI_RS20800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DDI_RS20800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DDI_RS20800 PF02770 Acyl-CoA dehydrogenase, middle domain DDI_RS20810 PF13193 AMP-binding enzyme C-terminal domain DDI_RS20810 PF00501 AMP-binding enzyme DDI_RS20815 PF00501 AMP-binding enzyme DDI_RS20815 PF13193 AMP-binding enzyme C-terminal domain DDI_RS20825 PF00501 AMP-binding enzyme DDI_RS20825 PF13193 AMP-binding enzyme C-terminal domain DDI_RS20835 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DDI_RS20835 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DDI_RS20845 PF03472 Autoinducer binding domain DDI_RS20845 PF00196 Bacterial regulatory proteins, luxR family DDI_RS20850 PF00765 Autoinducer synthase DDI_RS20870 PF13693 Winged helix-turn-helix DNA-binding DDI_RS20900 PF08340 Domain of unknown function (DUF1732) DDI_RS20900 PF03755 YicC-like family, N-terminal region DDI_RS20905 PF03466 LysR substrate binding domain DDI_RS20905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS20910 PF01244 Membrane dipeptidase (Peptidase family M19) DDI_RS20915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS20920 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS20925 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS20925 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS20930 PF00005 ABC transporter DDI_RS20930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS20935 PF00005 ABC transporter DDI_RS20935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS20950 PF01757 Acyltransferase family DDI_RS20980 PF00005 ABC transporter DDI_RS20980 PF12704 MacB-like periplasmic core domain DDI_RS20980 PF02687 FtsX-like permease family DDI_RS20985 PF12704 MacB-like periplasmic core domain DDI_RS20985 PF02687 FtsX-like permease family DDI_RS20985 PF00005 ABC transporter DDI_RS20995 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDI_RS21000 PF01112 Asparaginase DDI_RS21015 PF03576 Peptidase family S58 DDI_RS21020 PF12911 N-terminal TM domain of oligopeptide transport permease C DDI_RS21020 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS21025 PF00528 Binding-protein-dependent transport system inner membrane component DDI_RS21030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDI_RS21035 PF00005 ABC transporter DDI_RS21035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDI_RS21040 PF13378 Enolase C-terminal domain-like DDI_RS21040 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDI_RS21050 PF02656 Domain of unknown function (DUF202) DDI_RS21055 PF02656 Domain of unknown function (DUF202) DDI_RS21060 PF01138 3' exoribonuclease family, domain 1 DDI_RS21060 PF03725 3' exoribonuclease family, domain 2 DDI_RS21065 PF00156 Phosphoribosyl transferase domain DDI_RS21070 PF00440 Bacterial regulatory proteins, tetR family DDI_RS21075 PF00692 dUTPase DDI_RS21080 PF02441 Flavoprotein DDI_RS21080 PF04127 DNA / pantothenate metabolism flavoprotein DDI_RS21085 PF04002 RadC-like JAB domain DDI_RS21090 PF00830 Ribosomal L28 family DDI_RS21095 PF00471 Ribosomal protein L33 DDI_RS21100 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DDI_RS21100 PF06827 Zinc finger found in FPG and IleRS DDI_RS21100 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DDI_RS21105 PF01467 Cytidylyltransferase-like DDI_RS21110 PF00535 Glycosyl transferase family 2 DDI_RS21115 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) DDI_RS21120 PF00534 Glycosyl transferases group 1 DDI_RS21135 PF00534 Glycosyl transferases group 1 DDI_RS21135 PF13439 Glycosyltransferase Family 4 DDI_RS21140 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DDI_RS21145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DDI_RS21150 PF01075 Glycosyltransferase family 9 (heptosyltransferase) DDI_RS21155 PF01370 NAD dependent epimerase/dehydratase family DDI_RS21160 PF04748 Divergent polysaccharide deacetylase DDI_RS21165 PF01551 Peptidase family M23 DDI_RS21170 PF00581 Rhodanese-like domain DDI_RS21175 PF02556 Preprotein translocase subunit SecB DDI_RS21180 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DDI_RS21180 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DDI_RS21185 PF00132 Bacterial transferase hexapeptide (six repeats) DDI_RS21185 PF06426 Serine acetyltransferase, N-terminal DDI_RS21190 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP DDI_RS21195 PF00892 EamA-like transporter family DDI_RS21200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDI_RS21200 PF03466 LysR substrate binding domain DDI_RS21205 PF01717 Cobalamin-independent synthase, Catalytic domain DDI_RS21205 PF08267 Cobalamin-independent synthase, N-terminal domain DDI_RS21210 PF01738 Dienelactone hydrolase family DDI_RS21215 PF01048 Phosphorylase superfamily DDI_RS21220 PF13350 Tyrosine phosphatase family DDI_RS21225 PF00311 Phosphoenolpyruvate carboxylase DDI_RS21230 PF01546 Peptidase family M20/M25/M40 DDI_RS21230 PF07687 Peptidase dimerisation domain DDI_RS21235 PF02774 Semialdehyde dehydrogenase, dimerisation domain DDI_RS21235 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDI_RS21240 PF00696 Amino acid kinase family DDI_RS21245 PF00206 Lyase DDI_RS21245 PF14698 Argininosuccinate lyase C-terminal DDI_RS21250 PF02646 RmuC family DDI_RS21255 PF01209 ubiE/COQ5 methyltransferase family DDI_RS21260 PF02036 SCP-2 sterol transfer family DDI_RS21265 PF03109 ABC1 family DDI_RS21270 PF02416 mttA/Hcf106 family DDI_RS21280 PF00902 Sec-independent protein translocase protein (TatC) DDI_RS21285 PF01026 TatD related DNase DDI_RS21290 PF00490 Delta-aminolevulinic acid dehydratase DDI_RS21295 PF02357 Transcription termination factor nusG DDI_RS21300 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase DDI_RS21305 PF00970 Oxidoreductase FAD-binding domain DDI_RS21305 PF00175 Oxidoreductase NAD-binding domain DDI_RS21310 PF00581 Rhodanese-like domain DDI_RS21330 PF00108 Thiolase, N-terminal domain DDI_RS21330 PF02803 Thiolase, C-terminal domain DDI_RS21335 PF00378 Enoyl-CoA hydratase/isomerase DDI_RS21335 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DDI_RS21335 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DDI_RS21340 PF00557 Metallopeptidase family M24 DDI_RS21345 PF09186 Domain of unknown function (DUF1949) DDI_RS21345 PF01205 Uncharacterized protein family UPF0029 DDI_RS21350 PF02386 Cation transport protein DDI_RS21355 PF12724 Flavodoxin domain DDI_RS21385 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DDI_RS21385 PF01565 FAD binding domain DDI_RS21390 PF08279 HTH domain DDI_RS21390 PF02237 Biotin protein ligase C terminal domain DDI_RS21390 PF03099 Biotin/lipoate A/B protein ligase family DDI_RS21395 PF00485 Phosphoribulokinase / Uridine kinase family DDI_RS21420 PF03144 Elongation factor Tu domain 2 DDI_RS21420 PF00009 Elongation factor Tu GTP binding domain DDI_RS21420 PF03143 Elongation factor Tu C-terminal domain DDI_RS21425 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DDI_RS21430 PF00467 KOW motif DDI_RS21430 PF02357 Transcription termination factor nusG DDI_RS21435 PF00298 Ribosomal protein L11, RNA binding domain DDI_RS21435 PF03946 Ribosomal protein L11, N-terminal domain DDI_RS21440 PF00687 Ribosomal protein L1p/L10e family DDI_RS21445 PF00466 Ribosomal protein L10 DDI_RS21450 PF16320 Ribosomal protein L7/L12 dimerisation domain DDI_RS21450 PF00542 Ribosomal protein L7/L12 C-terminal domain DDI_RS21460 PF00562 RNA polymerase Rpb2, domain 6 DDI_RS21460 PF10385 RNA polymerase beta subunit external 1 domain DDI_RS21460 PF04560 RNA polymerase Rpb2, domain 7 DDI_RS21460 PF04565 RNA polymerase Rpb2, domain 3 DDI_RS21460 PF04563 RNA polymerase beta subunit DDI_RS21460 PF04561 RNA polymerase Rpb2, domain 2 DDI_RS21465 PF05000 RNA polymerase Rpb1, domain 4 DDI_RS21465 PF04983 RNA polymerase Rpb1, domain 3 DDI_RS21465 PF00623 RNA polymerase Rpb1, domain 2 DDI_RS21465 PF04998 RNA polymerase Rpb1, domain 5 DDI_RS21465 PF04997 RNA polymerase Rpb1, domain 1 DDI_RS21485 PF00392 Bacterial regulatory proteins, gntR family DDI_RS21485 PF00155 Aminotransferase class I and II DDI_RS21490 PF04055 Radical SAM superfamily DDI_RS21490 PF06968 Biotin and Thiamin Synthesis associated domain DDI_RS21495 PF05690 Thiazole biosynthesis protein ThiG DDI_RS21500 PF02597 ThiS family DDI_RS21505 PF00899 ThiF family DDI_RS21510 PF02581 Thiamine monophosphate synthase DDI_RS21515 PF01964 Radical SAM ThiC family DDI_RS21515 PF13667 ThiC-associated domain DDI_RS21520 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ DDI_RS21525 PF00293 NUDIX domain DDI_RS21525 PF09297 NADH pyrophosphatase zinc ribbon domain DDI_RS21530 PF01208 Uroporphyrinogen decarboxylase (URO-D) DDI_RS21535 PF04493 Endonuclease V DDI_RS21540 PF04222 Protein of unknown function (DUF416) DDI_RS21545 PF00216 Bacterial DNA-binding protein DDI_RS21550 PF07356 Protein of unknown function (DUF1481) DDI_RS21555 PF02844 Phosphoribosylglycinamide synthetase, N domain DDI_RS21555 PF02843 Phosphoribosylglycinamide synthetase, C domain DDI_RS21555 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DDI_RS21560 PF02142 MGS-like domain DDI_RS21560 PF01808 AICARFT/IMPCHase bienzyme