        recF NONE
        gyrB    6039 ..    6057 +   -16  -5.24531   ACCGCACGATAACTG             GCCGCGCT TTT AGCGCGGC             TTTTTTATGGGCGCT 100 51
HRR29_RS00030    8204 ..    8217 +  -2.4  -4.15044   TTAATCGCGTTAGCA               TGAG GCAGCA CTCA                TTTATTCCGGGGAAC  55 110
        yidA    9064 ..    9090 + -13.8  -2.82516   AACCCGCTTGCGATA         CCCTGATGCG ATAACTG CGCATCAGGG         TATCCTCATGAAACA  84 42
HRR29_RS00040   10343 ..   10385 +    -7  -4.52589   CGTGGAGGCATTTCA GCGGGCGGGATGA-C-GGCG TTTGT CGCCAGATTTTCCTGCTCGC TTTTCTCTACACGCG  77 41
        ibpA   11498 ..   11510 +  -3.4  -3.84825   TGTGCCGAACTCGCT                TCTC AGAAG GAGA                TTTAGTATGCGTAAC  56 143
        ibpB   12008 ..   12025 + -12.7  -5.24531   GGGTGAAAAGATAAA             GCCCTGC CCCG GCAGGGC              TTTTTTGTGCGCCAT 100 88
HRR29_RS00060   14243 ..   14266 + -10.3  -3.78953   GCTGACGCAGCACCT          CCACCAGCC CGGTCA GGTTGGTGG           TTTCGTGGTGAACGT  75 496
HRR29_RS00070 NONE
HRR29_RS00075   17657 ..   17680 + -16.8  -2.90904   TGCACTAATCGTCCT          GACCGGCATC GCCC GATGCCGGTC           TCCTTGTCCTTGTCG 100 33
HRR29_RS00080 NONE
HRR29_RS00085   18634 ..   18648 +  -8.6  -2.78384   GAGCGAGCCAGCCGA               GCATGT CAT ACATGC               TCTGGTCGGAAAGGG  58 233
        dsdC   22298 ..   22318 +  -4.7  -3.06009   TACAGGTAATGCTTT            CGATTTATC CAG GGTAAACCG            TGTTAAAGCCTTTTA  50 90
HRR29_RS00105   23875 ..   23889 +  -3.5  -4.43844   AGCAGGTAAACGACC               CGTTG CCGAA CAGCG               TTTTATAGCTGGTGA  66 494
HRR29_RS00130   27614 ..   27625 +  -2.2  -3.93768   GAGTCTGCTATCAAT                TCTG TTTT CGGA                 TGTTTTATTCCCCGT  53 41
         hcp NONE
        ivbL   28508 ..   28532 + -10.7  -4.98531   CACACGAATCCAAAA         CCCCGC-CGG CGCAAA CCGGGCGGGG          TTTTTCGTTTAGGAC 100 53
        ilvB NONE
        ilvN   30631 ..   30642 +  -7.2  -4.07568   GCCGGATAAGCGCAG                CGCC ATCC GGCG                 TTTTCAGACCGCAGG  71 90
        uhpA NONE
        uhpB NONE
HRR29_RS00165   34074 ..   34090 +  -6.5  -4.18197   CCGAATGGCGCAAAA              CCAGGAA ATT TTCCCGG              TTTTACCTGGACGCT  69 60
        uhpT   35591 ..   35611 + -11.1  -5.29782   GCAGGTAACTTCTTT            GCCCGGTGT GTG ATGCCGGGC            TTTTTTATGGCTGTC 100 45
HRR29_RS00175   36197 ..   36213 +    -3  -2.78141   CTTTTGATGATAAAC             TGCGCGA CTTT TC-CGCA              CGTTTTTATCTTCAG  42 88
        nepI   37710 ..   37732 +  -3.3  -3.60098   AGAATGCTCGCCTTC           GGCCCGC CAATCATCT GCGCGCC           TTTCAGATACAGGCT  49 308
HRR29_RS00215   44908 ..   44922 +  -2.8  -4.77983   TATCGCTCTGCTTTT               TCTGTG GCG TACAGG               TTTTCTTAATATCTT  73 223
HRR29_RS00245 NONE
        nlpA NONE
HRR29_RS00255 NONE
HRR29_RS00260   55048 ..   55060 +  -6.3  -3.49232   AAATTAGATATACTC                GCATT AAG AATGC                TCTTATATTTCGAAA  61 150
HRR29_RS00265   56987 ..   57007 + -10.4  -2.75844   CCGGTCGTCAACATC           GCCACGCCC AACG GGGCG-GGC            ATTTCGCATAACCAG  71 208
HRR29_RS00275   69221 ..   69254 + -10.4  -3.05384   GTTGAATGGACATTT     GATATGCCTGGGAA ATATTC TTTCCAGGCATAAC      TTCGCTACAAACGAG  73 73
HRR29_RS00300   73866 ..   73878 +  -9.1  -4.72272   ATCAATGGTGCCCAG                CGCCA CGC TGGCG                TTTTTGCTGCCGACC  93 419
HRR29_RS00335 NONE
HRR29_RS00340   81497 ..   81509 +  -3.4  -3.51232   TTTAAGTTTTTGCGG                GCAT CATTT ATGC                TTGATTTAACAGCCA  51 58
HRR29_RS00345   82594 ..   82608 +  -2.8  -4.25056   CGTCGCAGAACTGAT               GCAC CTATTTC GTGC               TTTCTTCGTAGGGTA  60 27
HRR29_RS00350   83781 ..   83803 +   -15  -2.79133   ATTTACCGTTCCTCA           GTTGTTCGGT TAA ACCGAACAAC           TGTCATGAAGGATTG  93 130
HRR29_RS00355   84763 ..   84784 +  -2.4  -3.76815   TTGTTGGCTTTCCGG           TGAACGTGA CGCAA TCAC-TTCA           TTTAAGGTTTTCACT  51 318
HRR29_RS00375 NONE
        yicI   89705 ..   89737 +  -8.9  -3.78022   TTTGATTCCCCTCAC      CCTAACCCTCTCCCC AAA GGGGCGAGGGAATGG      TTTACTCCCTCTCCC  76 36
        gltS   94595 ..   94606 +  -2.2  -4.58395   TTCGCCCGGGCCGCG                GATC TCCA GGTC                 TTTTTGCGCAATCAC  66 223
        ligB  102480 ..  102501 +  -2.9  -3.28712   GGTCCTTCCCCCATA           TC-GAGCGCG ATT TGCGCACCGA           TTATCGAAAAGACGA  45 317
         rph  104727 ..  104744 +  -8.4  -5.83822   AAAATTGATTTTAAA             GGCGAC CAATGA GTCGCC              TTTTTTTTGCCTGTA 100 33
        pyrE  105804 ..  105819 +  -6.8  -4.93696   GCACAATCAGACGCA              GACGCG CGGT CGTGTC               TTTTTCGTCTTTCAG  87 401
        radC  108687 ..  108700 +  -6.7   -4.2074   TAGGCTATTTCTCGC               GATCC ATCG GGATC                TTTGTCTGTTCGGGA  72 38
        rpmB NONE
        rpmG  109344 ..  109359 + -11.8   -5.1925   CCTTGTATCGAAAAA              CCCCGC AACT GCGGGG               TTTTTTGCATTCTGC 100 50
        mutM  110203 ..  110213 +  -5.4  -4.19817   AGTGCCAGAAATAAG                 GCTA CTT TAGC                 TTTTCCATCAATGCC  69 27
HRR29_RS00520  118201 ..  118223 + -16.4   -2.7566   CAATACAAGAAAAAA           TAATGCCCGC CAG GCGGGCATTA           TCATTAGCGTTGCCT  95 23
         kbl NONE
         tdh  126865 ..  126908 +  -9.8   -5.1244   GATCCTGAGCTGGGA TAAGTAATCAAA-AAGGGGCC TCA GGCCCCTTATTTTATTGCTTC TTTTTCTCTTCATCC 100 19
HRR29_RS00595 NONE
        grxC NONE
        secB NONE
        gpsA  136303 ..  136325 + -10.6  -2.77658   TGTCACCTGAATGAC           CCAGCCAG CGCAGAA CTGGCTGG           TCATTAACTATCGTC  72 51
        cysE  137316 ..  137335 +  -9.2  -2.71712   GCAGGGCATCCAGGA            TCGTGGCC GGCA GGCCGCGG             GTTTCCGGGCCAAAC  61 168
HRR29_RS00665 NONE
HRR29_RS00670  149426 ..  149454 + -16.7  -5.18357   TCACTAATCCTTCCA        GGGCAGGAATGCG ACA CGCGTACCTGCCC        TTTTTTCATCGCTTG 100 34
HRR29_RS00675  150167 ..  150199 +  -4.2  -3.72576   AATCCCTCCACATGT     TAACT--CCCTCTCCC GTC GGGAGGGGGGAAGATA     TTTACTCGCCAGGCG  56 76
        selA NONE
        selB  153462 ..  153503 +  -5.8  -2.55351   TGACCCCCGTCGTAA AGCCGTTACCGGTTGGCGA GAAAA TCGCCAGCCGG-AACTACC CTTGATGTACACCAA  49 38
        aldB  155079 ..  155110 + -12.2  -3.72576   GCTATTCTAATCGCC      CAGCTCAGGCCGTC CATG GGCGGCCTGAGCAA       TTTGCTGGCGCAGGC  93 31
HRR29_RS00700  157122 ..  157137 +  -7.5  -3.34398   TAAAGAAAATCAAAC              CGGGC ACTCTC GCCCG               TATTTGGCGAAAGGC  64 254
HRR29_RS00715  159714 ..  159726 +  -6.2  -2.78384   CCGTGACGCTATAGT                GGCG CGTAT CGCC                TATCATCACCCCGGC  49 125
HRR29_RS00740  167540 ..  167568 + -14.7  -4.60797   CATATGTAATCTCGA        AAAAACGCCTTCC ACT GGAAGGCGTTTTC        TTTTCTATATCAACA 100 32
        xylA  174266 ..  174292 + -10.1  -3.11024   TGAAGATGCACGTAG        GCCCGGTAAGCG TTAG CGCC-ACCGGGC         ATTTCTGTTAAAGGA  70 47
        xylB  175825 ..  175872 +  -3.4  -2.62933   TGGTCTGTGCGTGCC TTCATTTCCTTGCCAGTATGGTG TTA CACCC-ACTGGCGAGGAGAACCA TCATGTCACGCATTG  43 79
HRR29_RS00775 NONE
HRR29_RS00780  177631 ..  177647 +  -2.2  -3.14931   CAGGTATCGGCAAAA              TTGCCG CGCCA CTGCAA              TTCGTGCAGCGTCCC  41 322
HRR29_RS00790 NONE
        glyQ NONE
        glyS  181990 ..  182003 +  -9.5  -5.65177   TACACATGCTAAAAA               CCCGC TTCG GCGGG                TTTTTTTATGGGTCT 100 52
HRR29_RS00810  184838 ..  184859 + -12.9  -3.19522   AGCCTTTAAAACACA           AGCCCCCGC AAAG GCGGGGGCA            TTCAATCTTCACTAC  83 32
HRR29_RS00820  186211 ..  186227 + -10.8  -6.02345   AATAAACCGAAAAAA              CCCCGC GCCTG GCGGGG              TTTTTTTTATGCTTA 100 36
        cspA  186693 ..  186708 + -11.8   -5.4387   CACAAAATTCAAAAA              CCCGCC TTCT GGCGGG               TTTTTTCATTTCTAT 100 57
HRR29_RS00860  195652 ..  195690 + -10.2  -3.30797   TAAACGGATGCGCTT   CCGTGGTGCTTTCAAGCC ACA GGCTCAAAAGCGGCGCGG   TATTCTCACTTTGCC  68 368
HRR29_RS00875  197191 ..  197218 +    -7  -3.85698   ACCACGGGCTTTACA        GCGATAGCG-GAT ACT AACACGCTGTCGC        TTTATGCCCGGGCCA  68 86
HRR29_RS00880  198583 ..  198599 +  -9.4  -5.72622   GTAAGCTGTATGAAA              GAGGCC TCTGT GGCCTC              TTTTTTCTTTATGCG 100 37
        eptB  200511 ..  200529 + -10.3  -3.14261   CGCGCAGTAGCTGCC             CTGGCGA GAATA TCGCCAG             TTGAATGGCTTTTTG  74 31
HRR29_RS00890  200685 ..  200706 + -14.5  -4.78752   ACCACATTCTGAAAA           GGGCTAACC GCAA GGTTAGCCC            TTTTTGCATTATGAT 100 37
HRR29_RS00895  202974 ..  202996 +  -9.1  -2.93047   ACGCCCTTCACCCTA           ACCCTCTCC CGCCA GGAGAGGGA           ATTTACATTTGTGAG  65 98
        dppB NONE
        dppC NONE
        dppD NONE
        dppF  207008 ..  207022 +  -8.5  -5.76633   GCATAACGAAAAAAA               CCGGC GCTAA GCCGG               TTTTTTTATGTCTGC 100 35
HRR29_RS00925 NONE
HRR29_RS00930  208542 ..  208553 +  -4.4   -5.7946   GCTCAAACTGAAAAA                GAGA GAAA TCTC                 TTTTTTTGTTACAGA  89 89
HRR29_RS00935 NONE
HRR29_RS00940  208806 ..  208822 +  -5.8   -3.3071   ACTGTATTCAACAAT              TCAGGC ATTTC GCCTGG              TTGATGTGGTGATAT  56 79
         tuf  210090 ..  210107 + -11.3  -4.60924   CAATGCGCATGAAAA             GGGCATC ATTT GATGCCC              TTTTTGCACGCTTTC  95 60
        secE NONE
        nusG  211253 ..  211281 + -15.4  -5.35224   TTAATCGTTGCACAG        GGCGCGAGATTG GAATA CAATTTCGCGCC        TTTTGTTTTTATGGG 100 64
        rplK NONE
        rplA  212515 ..  212551 +  -6.6  -3.72695   AAACTAATGCCTTTA   CGTGGGCGGTGATTTTG TCTA CAATCTTACC-CCCACG    TTTGCTAACGAAAGT  64 34
        rplJ  213288 ..  213301 +  -3.8  -3.89695   GCGATGCGAAAGAAG               CTGC TTAATC GCAG                TTATCTTTATAAAGC  56 18
        rplL  213767 ..  213792 + -17.7  -4.64766   AGTAATTAGGCTGAT         GGCTGGTGACT TTTT AGTCACCAGCC          TTTTTGCGCTGTAAG 100 65
        rpoB  218094 ..  218123 +   -15   -3.4252   TCGCTCAAACAGGTC       ACTGGTGCCGGG TTAACC CCCGGCACCAGA        TTGTGCTAACTCCGA 100 44
        rpoC  222456 ..  222469 +  -9.5  -5.51402   CCCGACAATAAAAAA               CCCGC CTCG GCGGG                TTTTTTTACATCTGT 100 106
        nudC NONE
        hemE NONE
         nfi NONE
HRR29_RS01055  234592 ..  234604 +  -4.8  -3.20349   GATAACGCCCGTTTT                GTCG CTCCT CGAC                TCTTCCCTTTCGCCC  52 56
        hupA NONE
HRR29_RS01065  236015 ..  236033 +  -8.8  -3.32946   TCTTCCAGCGGCAGG             CCGTGGAT TTC ATCCCCGG             TGTTGTAGTTGCCCG  64 316
HRR29_RS01080  240798 ..  240811 +  -2.3  -2.72471   AAGAACCTGCCTTTG               CAGTG CTCA CACAG                ATTGTCTGATGAAAA  39 36
HRR29_RS01085  240974 ..  241009 +    -7  -4.00532   AGTCACCTGCCGTCA    TATCTCAAAACTCATC TCCG GGTGACGTTTGAGATA     TTTGCTCTTTAAAAA  68 61
HRR29_RS01090 NONE
         rrf  244237 ..  244258 + -13.7  -5.52347   CATCAATTAAAAGAA           CCCCGTACC GAAA GGTGCGGGG            TTTTTTGCTTTTGTT 100 40
        metA  245377 ..  245392 + -10.4  -5.63517   CAGCTATTCAAATCA              GGCACC TTCG GGTGCC               TTTTTTATTTCCGAA 100 71
        aceB NONE
        aceA  248544 ..  248587 +   -11  -3.00022   CACAGTTCTAATCTT TTCCCCCTCTCCCC-TCTC GGGGAGA GGGCTGGGGTGAGGGGGAA TATATGTCGCGTGGC  75 30
        aceK  250829 ..  250860 +  -8.8  -3.63627   GGTCGATGATAATCG      CCTGGTGGTCGCT CTGGTCC AGC-ACCGCCAGG      TTTACGGTCTCGCCG  69 524
        metH  255126 ..  255152 + -14.4  -3.74101   CTTTTCCTTACAACA         AACAGGGCGCTC ATT GGGCGCCCTGTC         TCTTTCTTACGTTTA 100 46
HRR29_RS01130  256900 ..  256911 +  -3.6   -4.1466   CCAATGCTTTCATGA                CCGC CAGA GTGG                 TTTTAAGCGTTGGGT  62 72
        rluF  258793 ..  258810 +  -6.3  -3.12351   GTAGCCATTGCTGAA             GCCTC-CT GAT AGAGAGGC             TTCAGTGTAAAGCAA  57 306
         pgi  263267 ..  263285 + -11.7    -5.626   AACGTCATGAAAACG             TGCCGGC TTAAT GCCGGCA             TTTTTTTATCGGATA 100 45
HRR29_RS01170  263876 ..  263897 + -11.7  -3.57561   CGGGTGTTTTAATCA           TAACCACAC TTCG GTGTGGTTA            TTTCGCCCCTTCGGA  86 44
HRR29_RS01175 NONE
HRR29_RS01180 NONE
HRR29_RS01185  267396 ..  267424 + -13.1  -2.66912   TTCCGCTGATGCCCC        TCACCCTCTCCCC TAA GGGGAGAGGGGAA        TCCTCTCCATTGCGT  81 32
        psiE  268322 ..  268347 +    -6  -3.61398   CGGAACGCCTGCCAC         GGGGTTGCGC CATCCA GCGCGGCCGC          TTCTTCCAGCGAGCC  58 418
        malK NONE
HRR29_RS01215  274716 ..  274737 + -10.1  -2.70932   GACGTAATGACCAAA           CTGAGGGGC GCAA GCCCCTCAA            TCCTTGGGACGGCGC  68 55
        malM  275789 ..  275808 + -11.4  -5.52384   TTTGTTAGTAGTTTG            GTGCGCCT GAGT GGGCGCAC             TTTTTTTCGTAGCCG 100 61
        ubiC NONE
        ubiA  277369 ..  277395 + -10.1  -5.60993   TAGCAGGACATCTAG        GCCCGGTAAGCG TTAG CGCC-ACCGGGC         TTTTTTTATCGCCGA 100 81
HRR29_RS01245  280918 ..  280939 +  -3.5  -4.59773   CCAGCCCGTCATCTG           CGGGCCGTC TTTC GGCAGGCCG            TTTTTCAGCATCACC  69 182
        ftsY NONE
        ftsE NONE
        ftsX  285039 ..  285070 + -10.1  -3.53933   GAGATGCTCGCTCTG      CAGGGAAAGCGTC CCTGTT GTCGCTTCCCCTG       TTATCATCTTCATGT  75 71
        rpoH  286125 ..  286146 +  -6.5  -5.55855   GAAGTACACCGAGAA           CCCCTGGAT GAGA GTCTGGGGG            TTTTGTTTTTTTAGC  91 48
HRR29_RS01280  287513 ..  287536 +  -8.8  -3.52877   ACGTTAAAGCCACAT          GCCCGGCG AAAATCCC TGCCGGGC           TTATCATATATTCAT  72 34
        livJ  288946 ..  288973 +  -9.9  -4.66535   CAGTGGAGAATGTAG       GCCGGGTAAGGCG CAGC CGCC--ACCCGGC        TTTCTTTTAGCGCTT  93 169
        livK NONE
        livH NONE
HRR29_RS01305  293138 ..  293151 +  -3.1  -2.90403   AGCGAAAGGAGAGCA               GGCATG AGT CA-GCC               ATTATTATCCGTTAA  42 19
        livG NONE
        livF  294637 ..  294652 +    -9  -5.30189   AGGTAAAAGCAAAAA              GGCAAC GCAA GTTGCC               TTTTTTAATGTTATC 100 39
        ugpB  296337 ..  296353 +  -3.6  -4.42386   CCATAGGGGAGAGGG              GACTGC GCGGA GCCGTC              TTTTCTCCCTCGCCC  65 71
        ugpA NONE
        ugpE NONE
HRR29_RS01335 NONE
        ugpQ  300114 ..  300144 +  -2.4  -4.15833   GCGTTCATCTGATTT       TGCAGGCTTTGCTG CTG CATCTGGGTCTGCG       TTTTAAGCTGCTGAT  59 178
         ggt  302193 ..  302230 +  -4.7  -4.89009   CGGCGGGGTATTGAT   GGTTTGCCGGGTGGCGGC TTC GCC-TTACCCGGCCTACG   TTTTTCATTCCCTCT  76 27
HRR29_RS01360 NONE
HRR29_RS01365  304897 ..  304930 + -21.9  -3.93695   AAATCATAAATAAAT     GCCCATCCTTCCCTT TGAC AGGGGAAGGATGGGC      TTTGTCCGTGATAAA 100 42
        gntR  306059 ..  306070 +    -3  -3.04144   CCCCGGCAGGACAAT                GTTA CCGA TAAC                 TGTTACCCGTAACAA  43 107
        gntK NONE
        gntU  308006 ..  308034 + -13.2  -4.27117   AAGGCTCAAAAATAA       GGCCTGGT-AGCG TTAA CGCTTACCGGGCC        TTTATATTATGCAGA  95 56
HRR29_RS01390 NONE
        lexA  311767 ..  311791 + -12.9   -2.6675   GTAATCTCTTCCTGA          CAGGCTATGGC GCC GCTGTAGCCTG          CTTCATTCTCCACTC  81 37
        dinF NONE
HRR29_RS01405  313526 ..  313542 + -10.8  -4.24384   GAAGTACACCCTGAG              GGCGGC CATGA GCCGCC              TTTGCTTTTACTACT  90 65
HRR29_RS01415  314789 ..  314816 +    -2  -4.00042   CACAGCAATAGTTCG        TTCCTGTTTG GGTGATAA CAGACAGGGG         TTATTTCATAACAGA  53 139
HRR29_RS01420  316164 ..  316186 + -14.8  -5.03227   GACGTTCTAAAGTCC           ACCGGAGGCG CTG CGCCTCCGGC           TTTTCTTTGTGCTAT 100 31
        dusA  317266 ..  317289 +   -16  -4.58773   TCGTCAAATTCACCA          CGCCCTGCGA ACGT TCGCGGGGCG           TTTTGCTTTAATAAC 100 55
        pspG  317764 ..  317783 + -13.6  -2.69725   AACTAAAAAAAGAAA            GGGCTTCC CACG GGAAGCCC             AATTTCTTTTTGGGG  83 174
        dnaB NONE
         alr  321364 ..  321409 + -11.2  -3.91488   CATCGACTGAGACTC GCAGATAGTCGTCCAACGGCA TTAGC TGCCGTTGGACGCGTAAC-GC TTATTTCAACACGTT  87 31
HRR29_RS01455  323498 ..  323531 + -12.6  -5.42259   AAAATGCGTTAAAAG     AAAAGCGCAACAGA TGGACC TCTGTTGCGCTTTG      TTTTTTTAACGGTAC 100 72
        tyrB  328022 ..  328032 +  -4.6   -3.4178   CTCCTTCCCTTCACC                 TCCC GCT GGGG                 TTATGGTCGGATAGT  51 161
        aphA  328830 ..  328840 +  -3.2  -5.15634   TAAGTATCCGGCAGC                 GGGT TTG ACTC                 TTTTTTAATCAAATC  75 38
HRR29_RS01500 NONE
HRR29_RS01505  330202 ..  330214 +  -4.7  -3.39936   TTTGTACTTAATCTC                CAGCG TTT CGCGG                TTATAGCGTTTGCCT  51 524
        ssb1  333336 ..  333353 +    -7   -5.7946   GCTGAAAACAAAAAA             CCCAGA CTAGCA TCTGGG              TTTTTTTATTCCGGA  93 50
HRR29_RS01525  335844 ..  335856 +  -4.7  -3.60296   AGGAATTTATGACCT                GGCAG CAG CAGCC                TTTGCACTGAGGGTG  56 3
        soxR  336865 ..  336891 + -12.4  -4.62904   AAGCATTATAAAGAA         CTAAAGCGCC ACATAAG GGCGCTTTAG         TTTTTCCCGGTCTTT 100 134
HRR29_RS01540  337810 ..  337835 +  -3.4  -2.87313   GAAATGTAAACAAAT        TGCGCATAGACG ATAA CGT-T-TGCGCA         TCCTCTGTTTATTTC  44 39
        ghxP  339461 ..  339480 + -12.8  -5.45802   CCATTGATGCGAAAA            CGGGTGGC TCAG GCCGCCCG             TTTTTATTTTCAGGA 100 46
HRR29_RS01550  341214 ..  341240 +  -9.5  -3.90762   CTGGACCTGCTGGAA         GCGCTGTTGAT AGAGA ATCAGTAGCGC         TGTTTTTGCCCGGTG  80 2
HRR29_RS01560 NONE
HRR29_RS01565  344312 ..  344329 +    -4   -3.5764   CGAGACCTTCAGCTC             GTCGCG CTCGCT CGCGCC              TTTGCGGATAACGTT  51 508
        gltP  350055 ..  350068 +  -2.4  -4.19817   CAGCAGTTTGATGGC               CTGA GGATAG TCAG                TTTTACCTGCCTGAG  59 427
HRR29_RS01610  355973 ..  355986 +  -3.1  -3.14564   GTCCGCTAAACTCCC               CG-GCT TCC AGCTCG               TTAATCACCAGATAA  43 408
HRR29_RS01645  364290 ..  364302 +  -6.2  -3.47322   ATTCCTCCGCTACCC                CGGC TTCCC GCCG                TTCATTATCGTAAGG  59 42
HRR29_RS01650  364899 ..  364926 +  -8.4  -2.93073   CTCGCGCGGTTCATG        GCTGCAGTCGAT AATT ATTGCCTGCGGC         TGGTTGTTGAGCAGG  59 258
        crfC NONE
HRR29_RS01740  380508 ..  380518 +  -8.2  -3.79251   AAGAGGCGGCGACGC                 CGGC CGT GCCG                 TTTCCTCCTCCGATG  68 297
        proP  383433 ..  383447 + -12.8  -5.27476   TGAGTAATAAAGAAA               CCCGCC AAC GGCGGG               TTTTCTTTTATTAGC 100 34
HRR29_RS01760 NONE
HRR29_RS01765  386643 ..  386678 +    -7  -4.00532   AGTCACCTGCCTCAG    TATCTCAAAACTCATC TTCG GGTGACGTTTGAGATA     TTTGCTCTTTAAAAA  68 61
HRR29_RS01770 NONE
         rrf  389897 ..  389918 + -13.7  -5.42514   CATCAATTAGAAGAA           CCCCGTACC GTAA GGTGCGGGG            TTTTTTGCTTTGTGC 100 40
HRR29_RS01785 NONE
HRR29_RS01790  391794 ..  391830 +  -3.6  -3.41878   CTGCTCGTCTCCGCC   TGGGCGGGCATGCTGGC TTAG GTCAGCGC-TCCACCCA    TTCTGCATTGGGCAA  49 5
        fxsA NONE
HRR29_RS01830 NONE
        groL  401647 ..  401670 +   -16  -5.50723   GTAGAATGTGAAAAA          CCCCCGGGCA GAAA TGCTCGGGGG           TTTTTCTTTTGGTCA 100 57
HRR29_RS01840  402161 ..  402182 +  -7.2  -3.15078   GGAAACTAGCGCTGC           CGCAGCTG CAGATC CAGCGGCG            TCTTGCTCGGCTCTC  59 83
         efp  403804 ..  403823 +   -15  -3.23708   TACGTCATGATTGAA            GGCGCAGC GCCC GCTGCGCC             TGATTTTTGCAGGCA 100 43
HRR29_RS01855  404008 ..  404025 +  -5.5  -3.45756   TAAAAATGCTTCCTT             TTCCGTC AACC GGCGGGA              TCTTGTCTATTCTTA  56 57
        ecnB  404236 ..  404271 + -12.6  -3.04404   CTCAGCAGTAATTAA    CATACGGTACGAGACC AGCG GGTTTCGTACCGTCAG     CTTTCTGATTCCTGC  80 30
        sugE  405434 ..  405454 +  -7.6  -4.08767   CGTTGGGCTGAAGCT           CAGCACCCA TTAA TGGG-GCTG            TTTTACCCAGATGAG  73 13
HRR29_RS01885  408355 ..  408376 +  -2.9  -3.09018   CAGACCGTAGAACAC           CCATTTCCC GCTC GGTACATGG            ATTTTCAGATCATGC  43 118
        epmA  412876 ..  412912 + -11.6  -3.17571   AGATCGCGCCTGACG   GCAG-TCAACCCTCTCC CGCG GGAGAGGGTTGCCCCGC    TTACCTTACAAACTT  79 28
         orn  419041 ..  419062 +  -3.5  -4.98857   GCTGTGATTTTGCGA           TCCGGCGCC TTGC GTGGCCGGG            TTTTTGTCGTTAAAT  74 34
HRR29_RS01935 NONE
HRR29_RS01940 NONE
HRR29_RS01945  419570 ..  419580 +  -3.2  -4.77867   CACAGCGAAAAGAGT                 CGTT GGG GACG                 TTTTCTATTGTCTCT  69 66
         nnr NONE
        tsaE NONE
        amiB NONE
        mutL NONE
        miaA NONE
         hfq  427486 ..  427518 + -11.4  -2.93708   TCGCACTGTTATCCA     CA-CGGGGAGC-CAGG GAT CCTGCGTTCCCCGCTG     ATCTTTTTAGAGAGG  74 45
        hflX NONE
        hflK NONE
        hflC  431170 ..  431193 + -14.6  -5.18371   GTTTGAGTATTCAAA          CCACCGCTCT CAAC GGAGCGGTGG           TTTTCTTTTATAAGG 100 51
HRR29_RS02000  431432 ..  431459 +  -3.4  -2.98823   AAAAGTAGACGCAAT        CGGCGTATTTTG AGGT CAAAAAGTGCTG         TATATCTGAAAAAGC  45 44
HRR29_RS02005  432970 ..  432984 +  -7.8  -4.49644   ATTAATGAATATCTC               TGCGGT TTG ACCGCG               TTTTCCCTTTTTCCT  79 179
        nsrR  433470 ..  433485 +  -2.6  -2.71712   GACAACGGAGGAACC              GA-CATG TCA CATGATC              CTTTCCAGGAACGCG  41 61
         rnr  435932 ..  435962 +  -7.4  -2.93073   AATTCTCCCCTCAAC       CTGACCCTCTCCCC AGC GGGGGGAGGGGAAA       TACTTATTACGAGAA  59 40
        rlmB  436726 ..  436744 +   -16  -4.94487   GAGAATAAACAGCAA             GGCCGTCC ACA GGACGGCC             TTTTGTGTTTTCTCC 100 33
HRR29_RS02030  440353 ..  440364 +  -4.4  -3.11088   AAGCGATGGATTCGA                TCAC GCGC GTGA                 TGTCTTCGATGCGTT  47 480
        yjfP  443636 ..  443654 +   -11  -2.88427   ACTTTGACGCCCTTA             TCTTCCCG CTT CGGGAGGA             TCTCTGGGGGCTCTT  74 49
        rpsF NONE
        priB NONE
        rpsR  445348 ..  445358 +  -4.6  -2.50307   TCGTCATCAGTAATC                 GGGC ACG GTCC                 ATTAATACGACTTTA  44 28
        rplI  445861 ..  445879 + -13.1  -4.77757   CTGCTCACGTTGAAA             CGCCGGC CTTGT GCCGGCG             TTTTGCTTTTTACAG 100 50
HRR29_RS02085  447424 ..  447453 + -15.1  -2.62396   TAATCGAATTTTCTT       ATTTCCTCTCCCC GGTA GGGGAGAGGAAAA        TAGTGTAAAAACCTA  90 38
        cycA  449141 ..  449158 + -11.3   -5.2197   AAGGTAAAAGCAAAA             CGGCAAC TTCG GTTGCCG              TTTTTAGTTTTTCTA 100 34
HRR29_RS02100  451828 ..  451854 +   -13   -3.1855   AATCACACCTCCGAC         GCCGGAACGACC CTC GGTTTTTCCGGC         TTCGCTCTTACCGCC  83 126
HRR29_RS02120  456957 ..  456967 +  -8.2  -2.70932   GGCTTTAATACTCTG                 CGCC AGC GGCG                 TCGTTGCGCGCCCGA  61 135
HRR29_RS02130  458526 ..  458538 +  -4.1  -4.47328   AGGCGCTGTCCAAAA                TTGCT CCC GGCAA                TTTTGTCCTCAGCTT  67 299
        cysQ  461972 ..  462002 +  -2.4  -5.28983   GTCGTGAGGGAATTT       TGCGGCCTTGATCG CTT CCACCAGGGTAGCA       TTTTTCTCTTTTGCG  80 316
HRR29_RS02150  462792 ..  462810 +   -16  -3.50335   CAGTAGTTAAAAAAA             CGGCTCCC AAT GGGAGCCG             TTGATGTTTGTAGAG 100 54
HRR29_RS02160  465647 ..  465661 +  -2.8  -4.11805   TACTTTAAATCATTT               GTGAAA TTC TTTCCC               TTTATATCCTATACT  56 81
HRR29_RS02170  468149 ..  468161 +  -2.6  -2.58861   TACGCAACATATACA                GTGG TTTGT CCGC                ATTGTGGAAGTACTA  41 50
HRR29_RS02175 NONE
HRR29_RS02180  469612 ..  469627 +    -9  -5.46657   TGGCTGATGTTAAAA              GGTAGC GTAG GCTACC               TTTTTTATTGCCATC 100 34
        tamA  476842 ..  476852 +  -4.6  -2.62316   TTACAGTTTTACATC                 GGTC TGG GGCC                 TGAATTATGAGTTTA  45 5
        tamB NONE
HRR29_RS02215  480989 ..  481012 + -16.8  -6.15536   CAGTACTGAAAAAAA          CAACGCCACC GTGA GGTGGCGTTG           TTTTTTTTATTCCTT 100 32
        ytfQ NONE
HRR29_RS02240  485992 ..  486032 +  -2.4  -3.53224   CCGGCGATCATGAAT  GCCATCGCGGCATAAGGA GTAAA TCGTGATGCCCCGTTCGC  TTTCGCAAACCGGTG  47 11
HRR29_RS02245 NONE
        yjfF NONE
HRR29_RS02255  489706 ..  489728 + -13.4  -5.42198   CATAATATTACCCAG           CCCCGGTACG TTC TGTGCCGGGG           TTTTATTTTTTCCGG 100 36
         mpl  492789 ..  492826 + -15.7  -3.43218   TTACCGGGCCTACTT   TCTTTTCTCCCTCGCCCC TAC GGGGTGAGGG-GAACAGA   TTACTCTTCGTTCTC 100 65
        pmbA NONE
        cybC  495282 ..  495300 + -17.4  -5.75945   CTGACAAACAACCAG             CGGGGGCC AGC GGCCCCCG             TTTTTTTTACGCGGT 100 53
HRR29_RS02290 NONE
HRR29_RS02295 NONE
HRR29_RS02300 NONE
HRR29_RS02305 NONE
HRR29_RS02310  498043 ..  498062 + -16.4  -2.57564   CGCCCTTTAATACCC            GCGGGCGC TCAG GCGCCCGC             CTTATCAGGAGATCC  95 31
HRR29_RS02315 NONE
HRR29_RS02320 NONE
HRR29_RS02325  501083 ..  501110 +  -9.9  -3.53012   TAACCCTCTCCCAAA        GGGAGAGGG AACTTTTACC CCCTCTCCC         TTTGGGAGAGGGCCG  75 56
HRR29_RS02330 NONE
HRR29_RS02335 NONE
HRR29_RS02340 NONE
HRR29_RS02345  505176 ..  505186 +  -4.6  -4.77165   CATGCCGGAATTTAA                 GCGC CAG GTGC                 TTTTGTTATAGCAGC  76 374
        mgtA  515298 ..  515335 +  -8.3    -3.737   GGACCGCTCGGTGTC   GCCTTTCACCCTCGCTCC TTT GGGGTGAGGG-GGCTGGC   TTTCCTCCCAAATTC  72 82
HRR29_RS02380  517878 ..  517893 + -10.4  -5.60993   GCAAGCAACAAAAAA              GGCAGC CTGG GCTGCC               TTTTTTTATCGCCAA 100 40
HRR29_RS02435  526862 ..  526876 +  -4.2  -5.37865   GGCATAACGCGGATC               CTGCGT ATG ACGGAG               TTTTTTCATTGTTGA  87 461
        rraB  529292 ..  529311 +   -15  -4.56597   CACTAAGCGTTTCAG            GCGGTGGC GCGC GCCACCGC             TTTTTCAAGGCAGAA 100 35
        miaE NONE
HRR29_RS02465 NONE
HRR29_RS02470  531048 ..  531063 +  -4.6  -5.76633   AAGATGCAAATGAAA              GTCGCT TAAG GGCGGC               TTTTTTTGTGTCTGA  89 42
HRR29_RS02480  533490 ..  533518 +  -4.5  -2.79803   CTAATCGTGGGGGCA        GGTCAATCTGCTG GCT CATCTGATTGAAC        ATTTCAGTAAAATTC  46 50
HRR29_RS02495  538841 ..  538868 +   -10  -4.22414   AGATAAACCATGCAG        CCAGAGAGATCGT TAT ATG-TCTCTCTGG        TTTATCTGTTAAATT  87 54
HRR29_RS02500  540602 ..  540622 +  -2.6  -4.06993   CCTGTCCGATTCTGG           CCTGAATCA ATGC TG-TTCGGG            TTGTTTCGTCTATCG  56 420
HRR29_RS02510  541948 ..  541961 +  -3.8  -3.66178   AGTGATTAAGCGTGG               CAGC GGGCAG GCTG                TTTAAACTTCAAACC  54 7
        fosA  544805 ..  544835 +  -7.6  -3.53012   ACCAGCGTCGGCACG       TCGATTTTCGCC ATATCCG GGCGGAAGTCGG       TTTCGCCGAACGCGG  62 321
HRR29_RS02555  550272 ..  550310 +  -3.7  -2.76686   CCCGGCACGCTAAGT  TCCGCTGGCGGGCTGG TCCCTCAT CCGGCTCGCC-GCTGC   CTCTTTCTCTGGAGT  44 28
HRR29_RS02560 NONE
HRR29_RS02565 NONE
HRR29_RS02570 NONE
HRR29_RS02575  557027 ..  557039 +  -3.3  -4.15044   TGTGGCGCTGCTTCA                GGGCG TAG TGCTC                TTTATTGCGCACGGC  60 247
HRR29_RS02590  559147 ..  559181 +    -7  -3.48064   TGTGTCATGCAGAAG     TCTGAAAGGCACCCGT TGA GCGGGTGCCTGGAGGA     TTACTTAATTCTGGG  63 483
HRR29_RS02670  578955 ..  579002 +  -6.3  -4.45083   TACTTCGACGAGTAA CCTG-CCTGT-TGCCCGGTG-GCG CTG CGCTTACCGGGCCTACAGGATCGG TTTTCTCCCTCTCCC  75 26
HRR29_RS02680 NONE
HRR29_RS02695  583636 ..  583651 +    -4  -3.01924   CGGCACGGCGATCAT              GTCC-TG CGG CACGGAC              TCTTCAAGGCGGATC  45 453
HRR29_RS02705 NONE
HRR29_RS02710 NONE
HRR29_RS02715 NONE
HRR29_RS02720 NONE
HRR29_RS02725 NONE
HRR29_RS02730  590021 ..  590038 +  -6.9  -3.60431   GGTAGTGCTTGATGT             TGTCGGC TTTC GCCGCCA              TTTCCGGATCGTTTT  60 444
HRR29_RS02740 NONE
HRR29_RS02745  591935 ..  591945 +  -6.8  -4.13767   CCGAACCGAGCCCCA                 GCAG GAT CTGC                 TTTTGCCGTGAGGGA  71 343
HRR29_RS02760  594615 ..  594630 + -10.4  -5.75342   GAGGTCATAAAAAAA              CCTGCC AGCC GGCAGG               TTTTTTTTAAAGGGA 100 41
HRR29_RS02775  597642 ..  597683 + -10.4  -3.14132   CGTCGCTGTAAGTCA TTAATTAACCTGAAGCAA CGTTCA TCGCTTCAGGTTAATAAA  TTACTGGGCAGAGGG  74 386
        hpaR NONE
         tsr  615273 ..  615318 +    -9  -3.97741   GGCGATATCAAAGCG GCAGACGCATGGCACAGCG GGAGTTATA CGCTAAGCCGTGCG-CTGC TTCTTCTTCACGTTT  77 124
HRR29_RS02910  624430 ..  624442 +  -4.8  -3.05844   CCATCGTCGAAAATT                GCAC GATGA GTGC                TGTTGGGCTGCAGCA  50 17
        bglJ  625286 ..  625309 +  -8.1  -3.19463   GCACACGCCGCCAAC          GGGGTGACC TGTGAT GGTCACCAC           TTCATCACTGCTGAG  59 241
HRR29_RS02925  627255 ..  627272 + -11.3  -4.97461   TAGGTTAAAGCAAAA             CGGCAAC TCAG GTTGCCG              TTTTTAGTGTTTGTT 100 38
HRR29_RS02940  630248 ..  630281 + -11.7   -2.5805   TGCAAAAATGGCCGA     TGCAGGCGCTATGCG GAGC CGGATGGCGCTTGCG      CTTATCCGGCCTGCT  76 502
HRR29_RS02965 NONE
        rimI NONE
        yjjG  633013 ..  633031 + -10.2  -3.29043   TTTGTATTCCATGAT             GCGTGGCG TGC TGCCGCGC             TTATAAAAGAAGATT  74 78
        prfC  634651 ..  634672 + -15.9  -4.11039   CACTAATCCCTCTCA           GAGCACGGC TGCC GCCGTGCTC            TTCTTTAATTCCTGT 100 35
        osmY  635625 ..  635645 +  -4.7  -2.71712   TCTGGAAAAACGCCG            GTGAGTG ACCTGAG CGCTCAC            GTTTAGCGGCCGACA  47 93
HRR29_RS02990  635876 ..  635894 + -13.2  -5.38549   CTTCAACAAAAAAAA             GCCAGTCA CTG TGACTGGC             TTTTTCTTATTTGCG 100 55
HRR29_RS02995  637014 ..  637027 +  -3.1  -3.91897   GATAACGAGGATCTG               GC-GTG ACG CACCGC               TTTGTCGATACCCAC  54 20
HRR29_RS03000  638155 ..  638178 +  -5.2  -3.59979   TTGCGCCATCCAGTA          CCGGC-AGCAG CTT TTGCCAGCCGG          TTTCGCCTAACAGAC  56 382
        deoC  641314 ..  641329 +  -2.5  -3.85698   ACTCCCCCGATTCCG              CATGG AGGTTA CCGTG               TTTCTCGCACAAGAA  53 122
        deoA  642636 ..  642657 +  -3.8  -2.66964   CGACTGTCTATCGCC           GTATCACCG AATAG CGGT-ATAC           TGATCTGATCGATAA  43 12
        deoB  643906 ..  643920 +  -6.4  -3.30159   ACGTCTGACATGGAA               TATGGC AAG GCCATG               TTCTAAACGGATTGG  59 5
        deoD  645012 ..  645023 +  -3.6  -2.66034   GGCTATCGGTAAACA                CCTG CGTG CGGG                 TGATATGGCCTTTCT  42 263
        serB NONE
        radA NONE
        nadR  650371 ..  650395 +  -9.9  -2.76671   CTTACCCCTCACCCT          AACCCTCTCCC ACA GGGAGAGGGGA          CTTTAACCTCCCTCT  69 44
HRR29_RS03065  652524 ..  652541 + -11.3  -4.81644   TACAAACATAAAAAA             CGGCAAC CGAG GTTGCCG              TTTTGCTTTTATTTC 100 91
        sltY NONE
        trpR  656947 ..  656971 +  -4.1  -4.58663   ACTGCGATATCACCG          GCCCGAGCG CTTCACC CGCACGGAC          TTTTTCCAGAATGAT  70 205
        gpmB  658264 ..  658304 +  -5.4  -4.77157   CCATTGGCCATCTCT GGCGTC-AGCGCGGTGGTGT AGA ACACCTCC-TGCTCGTCGTC TTTTTCCTGGCTTGG  79 281
        creA NONE
        creB NONE
        creC NONE
        creD  663100 ..  663115 + -11.8  -5.18357   TGGAAATAAAAAAAA              CGGCGC AAAT GCGCCG               TTTTTTAATGCGTTA 100 32
HRR29_RS03125  664405 ..  664456 +  -2.4  -4.58395   GCTATTTCGGTGATT TGTGTTGCATTTTTGTAAATT-CGC GCC GCGTAATATGTTGAAGTGCATCACA TTTTTGCCCGCTAAC  63 338
HRR29_RS03130  665168 ..  665188 +  -2.5  -2.87672   ATATTGAAAAAAAAT            TGGCGGAAT AAA ATCCTGTCA            TAAGTTTTTACTATG  40 15
        thrL  665483 ..  665505 +   -12  -5.78622   GAAAAACAAAAAAAA           GCCCGCAC CTGAACA GTGCGGGC           TTTTTTTTCGGCTAA 100 44
        thrA NONE
        thrB NONE
        thrC  670287 ..  670314 +  -9.9  -5.24129   ACGACCTGATCGTAG       GCCGGGTAAGGCG AAGC CGCC--ACCCGGC        TTTTTTGTGGAGAAA 100 90
HRR29_RS03155  670785 ..  670810 + -13.3  -5.15167   AAACGCCATTAATGC         AAAACCCCGCC AGCT GGCGGGGTTTG          TTTTTATTGCTCGTG 100 29
         tal  674304 ..  674334 + -11.9  -4.00756   GACCTGCTGTAATCA      TTCTGCGTGACCGG GCTC CCGGTCACGC-GAC       TTCTTTCGTACCCTG  95 29
         mog NONE
HRR29_RS03180  676686 ..  676702 +  -9.4  -3.56643   ACAGGCCCAGGTAAA              CGCCCA GGAAG TGGGCG              TTTGCCGCGTCTGCC  69 268
        dnaK  679220 ..  679260 + -13.5  -3.03159   ATGCAGGGTAATTAA T-CG-GCACGGGCGTAGGAG AACT CTCC-ACGCCCGTGCTCGCA TGTTAAGGGGCTTAA  82 49
        dnaJ  680458 ..  680477 + -13.6  -5.63517   TTTCATCTTCTCAAA            GCCCGGAA GCGA TTCCGGGC             TTTTTTATTTGCGCG 100 54
        nhaA  681830 ..  681840 +  -3.2   -2.9732   CACTCAGGGAGAGAA                 GACG CGA TGTC                 TCATTTAAATTACAA  43 78
        nhaR  682749 ..  682763 +  -8.5  -3.90744   GAAGGCATAAAAAAA               CCCGC GTTAA GCGGG               TTCTTTAAACAAGCA  74 39
        ribF  684287 ..  684305 +    -3  -3.53761   CGAGATGAATTGACG             GCCCGCGA GTT TTTTGGGC             TTTGAACCCGGCTTA  49 2
        ileS NONE
        lspA NONE
        fkpB NONE
        ispH  689144 ..  689166 + -14.9  -5.77853   CTTTTTCTGATGAAA           GGCCAGCAC CTCCT GTGCTGGCC           TTTTTTTTACCCGTT 100 43
        dapB  690208 ..  690226 + -11.8  -5.24647   TTGTTTGATTGCATA             GGGCAATA TTT TATTGCCC             TTTTATTTTGTCTGT 100 80
        carA NONE
        carB  695044 ..  695057 +  -3.1  -4.75404   GGCATTCTCCCATCT               TCAGA ACCT TCTGG                TTTTTCATCCGCTTT  69 71
HRR29_RS03260 NONE
        kefF NONE
        kefC  697906 ..  697952 +    -3  -5.08824   TTCTTTATCTTTACC CTGCCGCCAGTCGAC-GAAAG ATTAAG CTTTCCGTATAGTGGCGGCAA TTTTTTGCATCCGGG  72 69
        folA  698463 ..  698488 + -17.7  -3.12351   CGTCGTTAAGTGATT         TTCCCTCTCCC GGCC GGGAGAGGGAA          TTACGTATCAGGAGG 100 32
        djlA  706287 ..  706303 + -13.7  -6.07627   TTCAAATAAGAAAAA              GCCCGAC GAT GTCGGGC              TTTTTTTTTAGAAGT 100 32
        araC  717693 ..  717707 +  -2.8  -4.37092   TGCGGGGCGCTAAGC               AGAATC GCT GATTCG               TTTTCTGACCGGAAT  60 120
HRR29_RS03350  718581 ..  718591 +  -2.4  -4.14576   GACGCCCCCGCCTTA                 CCGC TCA GCAG                 TTCTTCTGTTTTTCC  59 112
        sgrT  723901 ..  723923 +   -15  -5.40004   TGGTGCTTATCACCC           GCCAGCAAAA TGT TTTTGCTGGC           TTTTTTCGTTTACTA 100 69
HRR29_RS03380  725174 ..  725190 + -10.8  -2.89323   GATGAACGAAACGGA              GCCCGG GAACG CCGGGC              TCTGTGAACCGTTTT  72 44
        leuO  733358 ..  733397 + -11.7  -5.47821   GTCGCCGGTAAACGC  ATCAGGATAAATCGCAT CGGTTT ATGTGATTTATCCTGAG   TTTTTTTAGATAACT 100 30
        ilvI NONE
        ilvN  735976 ..  735996 +  -7.5  -5.82316   GGTTCGCCTCTTTCT            GCCCGGT CACCAAA GCCGGGC            TTTTTTTTGCGTAAT 100 51
         cra  737144 ..  737165 +  -7.9  -4.39889   CAAAAATGAAATGAC           CGGGGCGGA GAAA TCTGCCCCA            TTTTGCTGTGATTAT  79 32
        mraZ NONE
        rsmH NONE
        ftsL NONE
HRR29_RS03455 NONE
        murE NONE
        murF NONE
        mraY NONE
        murD NONE
        ftsW NONE
        murG  748814 ..  748840 +  -4.2  -3.12395   CAGCCCAGGCTTAAC         CCTCGCAGCGCG TGT TGCGCTGCACGA         ATTTTAAGTAGTCGA  49 27
        murC NONE
HRR29_RS03495 NONE
        ftsQ NONE
        ftsA NONE
        ftsZ  754611 ..  754649 +  -3.7  -3.51411   GCTCTTTGTGCTAAA   CTGGCCCACCGTTAGTG ATATA CACTCTCGGTTGGATAG   TTAATTTGGCGAGAT  51 67
        lpxC  755615 ..  755658 +  -8.9  -5.61881   GTTTCGTAAAAAAAT CGACTGGTTAACCTGGT ACTCTCTCCG ACCAGGAAGACCAGTCG TTTTTATTTTTACCC 100 52
        secM  756400 ..  756415 +  -3.9  -3.66497   ATACCTTAATTTATC              TGCCC ACAATG GGGCG               TTTGAGAATTTATTA  54 54
        secA  759155 ..  759172 + -12.7    -5.252   ATAAAAAAACAAAAA             GGCGCAG AAAT CTGCGCC              TTTTTTATGGAAGTG 100 45
        mutT  759586 ..  759611 + -15.5  -3.61764   GTCGCACAACCGTAG         GCCTGCTGAGCG AAG CGC-CAGCAGGC         TTTACAGATTACTGC 100 26
HRR29_RS03550  762467 ..  762492 + -15.5  -2.61695   GTCTGTAATGGCTTC         TGCTGGCGCAT GCCC GTGCGCCAGCA          CTGTTTAGCACTAAC  90 33
HRR29_RS03570  767150 ..  767181 +  -7.3  -2.56715   AATAACTAAAACGAC      GAAAGGCCAGACA CTGGAA TGGCTGACCTTTC       TAAATTAATCAACAT  55 106
HRR29_RS03575  768823 ..  768841 +  -9.6  -3.20382   GGGTAGTTAGTGAGA             GTGCTCAC GTA GTGAGTAC             TTGATAGCTATCACA  71 199
HRR29_RS03580  770669 ..  770679 +  -5.4  -3.94411   CATAACATGATGTTT                 TCTG TAT CAGA                 TTGTATTGTTATTTT  63 36
HRR29_RS03585  771062 ..  771089 +  -4.8  -4.08546   GCGAATAGCTCATAA        TAAGGGCAATGG TTAT TCATTGCCCGAA         TTTATAATTAATCAT  64 40
HRR29_RS03590  771959 ..  771972 +  -4.5  -5.26316   TCTCGACACAAAAAA               CCG-CC AAA GGACGG               TTTTTTGTGAACTAG  79 414
HRR29_RS03605  774748 ..  774763 +    -9  -6.28401   AAACAACATAATGAA              GAGGCT TGAG AGCCTC               TTTTTTTATTTTTTA 100 154
        ampD NONE
        ampE  777488 ..  777514 + -15.2  -3.90112   AAAGCGTATCCGCGG         GCGGGATGCC GAAATCA GGCATCCCGC         TTTCATTCCAGCGGA 100 61
        pdhR NONE
        aceE NONE
        aceF  787489 ..  787506 + -14.1  -5.32882   TGATGTAATCGAAAA             GCCGGCC AGTC GGCCGGC              TTTTTTCTGATAATC 100 33
        lpdA  789102 ..  789116 + -12.8    -5.626   TTCAGATGAAAAAAA               GCGGCC AAT GGCCGC               TTTTTTTATGCGCTG 100 46
        acnB  794500 ..  794516 + -12.3  -4.93696   GTATAAACAGCAAAA              CCGTCTC CAT GAGACGG              TTTTTAGTGTTTGCA 100 35
HRR29_RS03685  795047 ..  795066 + -13.6   -2.6155   AACAGAAATAACAGA            CCGGAGCA TCCC TGCTCCGG             CTTGCTCTTACACGG  83 30
        cueO  798997 ..  799014 + -11.3  -4.81644   GAACAAACACAAAAA             CGGCAAC CGAA GTTGCCG              TTTTGCTTTTATTTG 100 106
         hpt  802272 ..  802284 +  -9.1  -3.61764   ATCCCCGAACGGTAA                CGCTG CTC CAGCG                TTTCGCGGTTGGTGG  66 139
HRR29_RS03725 NONE
HRR29_RS03730  804688 ..  804717 +  -7.1  -4.43877   TGCGCAGCTAATCTT       TTGCCCGGC-GACG CTC TGTTTGCCGGGCAC       TTTCTTTGACAGTTA  77 30
HRR29_RS03735 NONE
HRR29_RS03740  806590 ..  806610 +  -5.3  -3.59979   ACGTTTCATGTCGTT            GTCGCCTTC AAA GTAGGCAAC            TTTCGGCTGCCAGCG  55 77
        hrpB  816060 ..  816080 + -12.7  -3.60072   GGAGAAAACACTAAA            GACTTTCCT GAC AGGAAAGTC            TTGCTGTTTATTTTG  88 102
        mrcB  818707 ..  818728 + -12.3  -5.40072   AACTAAGCTTTTAAA           GCCCTCTTC CCTG GAAGGGGGC            TTTTTTTACCCGCAA 100 35
        fhuA  821192 ..  821211 +   -15  -5.33026   TTCTAATCTCTCTTC            GGGCACGG TTCG CCGTGCCC             TTTTTATTTAAGTTG 100 35
        fhuC NONE
        fhuD NONE
        fhuB  825241 ..  825253 +  -6.2   -3.8062   CGTGGTTAACCACCA                GCGG AATAC CCGC                TTCTTCTGCCGCTTC  64 367
        clcA NONE
        erpA  828347 ..  828366 + -12.2  -4.68645   AGAAAAGACTAAAAA            CGGTAACC TTGC GGTTACCG             TTTTGCTTTTACCTG 100 91
         dgt NONE
        degP  833692 ..  833709 + -10.5  -4.19307   CAGTAATCCTCTGAA             GCCCCTG TTCG CGGGGGC              TTTCTCGTTTCTGTG  87 35
        cdaR  835046 ..  835076 +  -9.8  -4.88405   AGAGGGCGCAAACAC       TAAAAACGGCAATC AAA GATTGCCGTTTTGC       TTTTATTTCCGCGTT 100 85
        rpsB  841051 ..  841069 +  -8.8  -5.22039   TACCGTGTATGAATA             GGGGCC CATTACC GGCCCC             TTTTTTCAATTTACA 100 62
         tsf  841994 ..  842015 + -13.7  -4.83615   CTTAATGATTGAAAA           GGAGCCGCC TGAG GGCGGCTTC            TTTTTGTCACCCGTC 100 36
        pyrH  842924 ..  842934 +  -8.2  -3.44319   TATCTTACCCGGGCG                 CGCC TTT GGCG                 TTGTCATGAATTAAA  67 90
         frr  843606 ..  843641 +    -9  -4.75518   TCGTACACTGATAAA    CGCCGTTCAGAAGGACT TCG GGTCTTGCTGG-CGGCG    TTTTGCTTTTATCTG  93 47
        ispC  844981 ..  844998 +  -8.4   -5.4251   AATGTGGTCAGGTGA             GCCGTG GTTTGA CACGGC              TTTTTTATGTATAGG 100 127
        ispU NONE
        cdsA NONE
        rseP  848046 ..  848063 +  -2.7  -3.01712   ACTTTTCAATGATTT             CTCTC GGTTGTAA GAGAG              TGTTAGGAAGAACGC  43 13
        bamA NONE
         skp  851104 ..  851114 +  -3.2  -3.08464   CATCACTGCTGATGT                 TCTG AAA CAGG                 TTAAATAAGTAATGC  43 7
        lpxD  852177 ..  852214 + -13.4  -4.13244   TTGAACGCTATTTTT   CCCGGCCTGTCGGCTT TCTAAT AAACCGGCAGGCCGTG    TTATTATTGTTATCA  95 51
        fabZ  852692 ..  852713 +  -4.3  -2.79098   ACGATGATGTGTGCT           CGTAGCCGG GAGT CCTGATACG            TGATTGATAAATCCG  46 8
        lpxA NONE
        lpxB NONE
        rnhB NONE
        dnaE NONE
        accA  859756 ..  859773 +  -8.4  -5.64274   ACAATTATCTGAAAA             GCCGCA CAATGT TGCGGC              TTTTTTTATACCTGC 100 46
HRR29_RS03970  861982 ..  861992 +  -2.4   -4.3208   AAGGGTGACCGCTTG                 CCAG GCG CGGG                 TTTTCGGTTGTAACG  58 39
HRR29_RS03975  862443 ..  862461 +  -7.4  -5.43414   TGTCCTGTGTGATAA             TGCCCG CTCAGTT CGGGCA             TTTTTTATGTGTAAT  95 45
        tilS  863772 ..  863790 +   -16  -3.29471   TGGCAGAAAGCGTAA             CGGGCAGC CAG GCTGCCCG             TTAGTGTCATCAGGA 100 26
HRR29_RS03995 NONE
        arfB NONE
        nlpE  866158 ..  866187 + -15.9  -3.73107   CCGACGCTGAGCCAT       TAAAAAACCCCGC CTGA GCGGGGTTTTTTG        TTTAGCCTTTGATGG 100 42
        gmhB  872850 ..  872867 +  -2.7  -2.93853   GTCTCTGAGTGAACA             TACGTAA TTCA TTACGAA              GTTTAATTCACGAGC  42 352
HRR29_RS04045  874452 ..  874465 +  -2.3  -2.72471   AAGAACCTGCCTTTG               CAGTG CTCA CACAG                ATTGTCTGATGAAAA  39 36
HRR29_RS04050 NONE
HRR29_RS04055  874720 ..  874753 +  -6.7  -4.49756   GCGAACACAAGAAAA     CTTCAGAGTGAACCT GAAA AGGTGCACTGCGAAG      TTTTGCTCTTTAAAA  75 50
HRR29_RS04060 NONE
         rrf  877977 ..  877993 +  -2.2  -2.71483   AAATTAAGTAGTAAG              CCGG TGCATAAAT CCGG              TGGTTACAGCAGTCT  39 44
HRR29_RS04070  878101 ..  878122 + -15.9  -5.60689   CGCCACTTATTAAAA           GCCCTGAGC TCAC GCTCAGGGC            TTTTTTCTTATCTGA 100 36
        dkgB  879089 ..  879106 +  -9.1  -5.10064   ACCTGAACCCTCACA             CGGCTCC TCCG GGAGCTG              TTTTTATATGTTCAC 100 60
HRR29_RS04085  881358 ..  881378 + -10.4  -3.36273   CCTATAACATTAGAA            CCAGTCCG TTTTC CGGGCTGG            TTCATGTTACAGAGG  77 114
HRR29_RS04090  882228 ..  882252 +  -6.4  -4.89063   GTCAGGTCTGCCGTG         GGGCAG-GCCT GTGC GGGTGCTGCCC          TTTATTTTTCACTCA  80 47
HRR29_RS04095  883064 ..  883085 + -11.6  -5.20783   GGAATAAACAAAAAA           GGCACCGA GGGGAA TCGGTGCC            TTTTTATCTTTCGAT 100 34
HRR29_RS04110  886403 ..  886415 +  -3.4   -5.1861   GTGGTCAGAAAATAG                CCTT CGCTA AAGG                TTTTTTCGTGCTGGC  81 377
        dnaQ  887339 ..  887350 +  -2.2  -4.56597   ATGCCTGTAAAATCA                TCGT TTGG GCGA                 TTTTTGCAGCAAACG  63 53
HRR29_RS04125  887532 ..  887555 +   -14   -3.8901   GCCACTATTCAGAAA          GCCTGAATCA GAAA TGATTCAGGC           TTTCGTCGTTTCAGC 100 37
HRR29_RS04130 NONE
HRR29_RS04135 NONE
HRR29_RS04140 NONE
HRR29_RS04145 NONE
HRR29_RS04150 NONE
HRR29_RS04155 NONE
HRR29_RS04160  896155 ..  896175 +  -3.1  -3.96624   GTGATGATGCTCATC            CGCCATGCG GAA CAGGTGGCG            TTTATCGTAAAAATG  58 506
        lpcA  899874 ..  899896 + -11.3  -3.22475   GTTAAGTAAGACTTC          GCTGGGGGCA CTCT TGCCCCC-GC           TGTTGTGGAGGTGAC  77 32
HRR29_RS04180  900793 ..  900804 +  -3.6  -3.54424   AAAGTAGTCGTAACC                CGGC TTCA GCTG                 TTTCCAGAAATCCGC  51 137
HRR29_RS04190 NONE
HRR29_RS04195 NONE
HRR29_RS04200 NONE
HRR29_RS04205 NONE
        nqrE NONE
        nqrF NONE
        nqrM  907790 ..  907832 +  -6.5  -2.55351   ACACACACTTCTCAA CCCTCATTTATTTACTGTAT ACTT ATCCAGTGA-TGAGTGAGGG CTTACTATGCGCAAA  52 84
        dinB  908901 ..  908928 +  -9.8  -2.84171   CTGGGGTTGTAAAAA        AGCCCGGTG-GCG CTA CGCTTACCGGGCC        TACGTTTTTCACCCT  69 29
         gpt  911170 ..  911193 + -13.2  -4.42748   CAGTACGTAACTTTA          C-ACGCCCGAC TAT GTCGGGCGTTG          TTCTTTTTGGCCTGC 100 44
        frsA  912518 ..  912534 +  -3.7  -2.52464   GATTGCTAAATTTCG              CTGGTTT GGT AAAACAG              TGGCTTCACAAAAGG  42 43
         crl  913058 ..  913088 + -15.7  -3.62096   ATGAATCCCCGACAA       TAAAAAAACCGGC ATCAA GCCGGTTTTTTTA       TTTCACATCATCAGA 100 124
        proB NONE
        proA NONE
HRR29_RS04265  917131 ..  917150 +  -2.8  -3.16961   TACATGCTTCTGGGG            GTACATTC GGGG GTATGTGC             TGTTCGGTCTTGTGG  45 145
HRR29_RS04270 NONE
HRR29_RS04275  919448 ..  919464 +  -3.6  -2.61274   ACCCGTTGTCTATCA              GCGTCT AACAA GGGCGC              ATTAGTTAAACTGGG  43 107
HRR29_RS04280 NONE
HRR29_RS04285 NONE
HRR29_RS04290 NONE
HRR29_RS04295 NONE
HRR29_RS04300 NONE
HRR29_RS04305 NONE
HRR29_RS04310 NONE
HRR29_RS04315 NONE
HRR29_RS04320 NONE
HRR29_RS04325  927164 ..  927188 +  -4.3  -3.63045   AAATTACAAAAGTGG          TGCGCAATTTA CAG TAAAATACGCA          TATTATTTCGTATTC  53 512
HRR29_RS04330  927881 ..  927891 +    -4  -3.06796   AGCGATATTCTGGTT                 TTCT GAC AGAA                 TTAGCTAAAATCAGC  47 39
HRR29_RS04335  928137 ..  928153 +  -4.4  -3.03159   GATACGGGATTATTC              CGCATG TAACT TATGCG              TATTAAGCAAATTAC  47 40
HRR29_RS04340  928866 ..  928880 +  -2.8  -3.51232   CCGGGTAAACCATAG               CGCA CGACCGT TGCG               TTAGTTTCACCGCCA  49 106
HRR29_RS04375  935656 ..  935675 +  -9.3  -2.81702   TAATCACCTGATCGC            CCGCTTC ATGGCC GAAGCGG             TCATTGATGCTCTTG  61 366
HRR29_RS04390  939049 ..  939060 +  -2.2  -3.63768   CGTGCCCGTTTGCGT                CTGG TCAT CTAG                 CTTTTTATTAACAAT  47 196
        mmuP NONE
        mmuM NONE
        tauA NONE
        tauB NONE
        tauC NONE
        tauD  945517 ..  945529 +  -2.6  -4.13014   AAAGGGGCGAGGGGA                CTGC CCGGT GCGG                TTTTCACCCTCTCCC  56 65
HRR29_RS04435  951601 ..  951625 +  -8.5  -4.82901   CTGGTAATGAATAAA          ACGGGGGAG TGGTTAT CTCCCCCGC          TTTTTATAGAAGCAA  88 34
HRR29_RS04440  952475 ..  952490 +    -6  -4.43844   ATATAGGTGATGAAT              CCGCCG CCGC CGCCGG               TTTTCTGAATAATAC  74 191
HRR29_RS04450  954235 ..  954266 +  -9.4  -4.82667   CTCGGGTCTGACCTT      TTTGCCTGAGTCGG GAGG CTGGCTCGGGCAGG       TTTTTCGTGTGGTAA  93 50
        sbmA NONE
HRR29_RS04460  956787 ..  956801 +   -10  -3.14132   GCGTCCGTTATCCTG               CACCTG CAT CAGGTG               TTCATAAACGCCCGG  66 154
HRR29_RS04470  957576 ..  957598 +  -2.7  -3.67175   GTGAACCCCGGCAGC           GTGTTGATT TCATT GATCACCAC           TTCGTTTTCCGGCGT  51 170
HRR29_RS04480  959419 ..  959433 +  -2.1  -2.58272   GCCGCATCTCTGGTG              CGACGT CAAA ACG-CG               TAACTTGCTAATCTG  39 128
HRR29_RS04485  960731 ..  960763 +    -5  -4.06419   TTATATATTCTTATG     GTAGCCGCATTTT TATATAAC AAAATGCGGC-GC      TTCTTTATAGAAAAA  64 57
        iraP NONE
        phoA  962693 ..  962715 +  -4.8  -2.70863   TTAAATGATAAAATC           CCGGCGGA AATCACA TCTGTCGG           CTGGTTTTTTTCCTG  47 33
        psiF  963100 ..  963131 +   -10  -2.92924   AAAAAGTGTAGTTCA      AACGGGTGAGCGGC TTCG GCGGCTCACCCGAA       ATTTCATACTTTCCC  69 30
        adrA  964327 ..  964339 +  -3.4  -4.69027   GAAATCAGGATTTAC                TCAG CTTCT CTGA                TTTTTCCATGCATTT  67 51
HRR29_RS04515  965701 ..  965742 +  -3.5  -3.60627   AATTATTGTCAATTT GTGGTACAGTGTGGCCTCC ACAG GGTTGTCATCCCGTACCGC  TTTGCAGTAAAGTAA  51 45
        aroL  966340 ..  966355 +  -2.4  -3.03741   CCTGCGTTTGGCTTG              TGCCAG CTAA CCGGCG               TCTATACTTATAGCT  42 16
HRR29_RS04525  966689 ..  966732 +  -2.5  -2.58961   AAGTAACTCCGGTAT CG--GCAGGCGATCTTTACAT TTCG ATGTCGGGATCACCTGCTACG CTTGGTGCTGTTTTG  39 129
HRR29_RS04530  967496 ..  967506 +    -4   -4.7254   TGGCCTCGGAACTCC                 TCAT GTA ATGA                 TTTTTCGTGACAGGT  69 18
        ppnP  967869 ..  967897 +  -8.8  -2.77519   CTGAAATAAAAAATA       AGCCGGGT-GGCG CTAA CGCTTACCCGGCC        TGCGTTTTGCCTGTT  65 32
         mak  969921 ..  969938 +  -9.9  -5.02231   AAGGTAAAAGCAAAA             CAGCAAC GCAA GTTGCTG              TTTTTGGTGTTTTTA 100 92
        phoB NONE
        phoR  976566 ..  976587 + -13.7  -4.07246   CATTTTACCTTTCCA           CGGGTCAGC GTCT GCTGGCCCG            TTTGCTTTGCAGTCA 100 53
        brnQ  978290 ..  978312 +   -17  -6.12458   CAACAAACTGTTTAA           CCACGGGGCT TAA GGCCCCGTGG           TTTTTTGTTTTTTTC 100 48
        proY  979753 ..  979763 +  -5.4  -4.62069   TTCCGTGGAAGGGGA                 TTGC CAG GCAA                 TTTTTAACCTGAAGC  74 56
        malZ  982102 ..  982129 +    -2  -3.03619   TTTCCACCTTTTAAG        ATGGCGCAAATG CAAC TATTTGTGTCAA         TCTTAACGGATCGTT  42 53
HRR29_RS04585 NONE
HRR29_RS04590  986148 ..  986165 + -14.1   -4.7254   TAAGGCATAAAAAAA             GGCCCGC ATAA GCGGGCC              TTTTTCGTAAACCGT 100 31
        queA  988646 ..  988673 +  -4.1  -4.11484   CTGGCTTTGAATGAG        C-GTGTCGGGGA ATAAG TCCGCGGCACCG        TTTTACAACGTTGGA  61 11
         tgt NONE
        yajC NONE
        secD NONE
        secF  993079 ..  993098 + -13.6   -6.0427   AGCGCGTTATCGAAA            TCCCGGTC TGTT GACCGGGA             TTTTTTTTATCTGCT 100 51
HRR29_RS04630 NONE
HRR29_RS04635  994260 ..  994277 + -11.3  -5.40072   GTTAAGCAGTAAAAA             GCCAGCT CTTG AGCTGGC              TTTTTTTGCCCGGCG 100 29
        nrdR  996676 ..  996690 +  -4.3  -2.78679   GCTTACAGGATTAAG               CTCAT GCAGG ATGAG               ATTTACATGGCGCGA  46 27
        ribD NONE
        ribE NONE
        nusB  998790 ..  998828 + -14.7  -5.95449   AAAGTGATCCGCAAA  CCGGAGTCCTGCATTGCCT GAC GGGCAGTGC-GG-CTCCGG  TTTTTTCTTTTATTT 100 34
        thiL 1000119 .. 1000133 +  -7.8  -2.68942   CTAAACGTTCGGCAA               TCAGCG CAT CGCTGG               CTTCTGTACCACCAT  53 314
        thiI 1005606 .. 1005639 + -11.6  -2.89564   CGCCCGTAGTTTTTT     GCCGGGGAGTGCGGC CTGAA GCC-CTCACCCCGGC     TCTCTCCCATAGGGA  77 32
HRR29_RS04710 1007748 .. 1007764 + -13.7   -5.4477   GATTGATATAAAAAA              GCCCGGT TTA ACCGGGC              TTTTTTTCACGCTTT 100 35
        bolA 1017322 .. 1017345 + -15.4  -4.59984   GCTTACAGATTTCCT          CAAAACGGCC TCCG GGCCGTTTTG           TTTTGTCTGAGTTTT 100 81
         tig 1018930 .. 1018951 + -13.7  -5.93809   AGTTTGAACAGAAAA           CCCGTTGCC TTGC GGCAGCGGG            TTTTTTTTATCGCAG 100 60
        clpP 1019790 .. 1019828 + -12.5  -2.73542   ATTGATGCCCGCGAC  GCGAGTGTGCCGCTATAC TAAG GTAGGGCGGCACGCT-GC   TGATTGCAGCTTGCG  78 36
        clpX 1021213 .. 1021231 +   -11  -4.33653   GCAGTTAATCAAAAA             GGGGGGAT TTT ATCTCCCC             TTTACTTTTTCCGTA  91 58
         lon 1023750 .. 1023779 + -10.1  -5.72616   CGTCAATAAAAACAA       GGCTGGTAAGT CATTTCGC ACTTGCCAGCC        TTTTTTTGTATAGCT 100 58
        hupB 1024237 .. 1024256 +   -10  -5.72622   GCCGGAAAGTACAAG            GGCGCATC ATTT GATGTGCC             TTTTTTGTTTGTCCA 100 62
        ppiD 1026331 .. 1026346 + -11.8  -4.39571   TCTGCAAAAACTAAA              GGCCGC TTTC GCGGCC               TTTTCCATTTCTGCA 100 72
HRR29_RS04790 1026857 .. 1026879 + -10.7  -3.14602   TTTTGCCAGGATAAA           GAGGTCATA CCAGT TATGACCTC           TCTTCCTACAATAAC  74 69
HRR29_RS04795 1027329 .. 1027361 + -10.7  -3.06679   CATGTTAAGGCGTAC     TCGTGCTGTCGACA CCTGTT TG-CGACAGCACGG      TTAAGTAGCCCTATT  73 43
         cof 1030772 .. 1030789 + -11.3  -5.95539   AGACCCTTCCAGCAA             GCCAGAC TTCG GTCTGGC              TTTTTTTATTTCACC 100 43
HRR29_RS04820 NONE
HRR29_RS04825 NONE
HRR29_RS04830 1036048 .. 1036071 + -14.6  -5.79526   GGTGCAAAACTGAAA          CGCACCGTGC ACCG GCATGGTGCG           TTTTTTTTCGCCTGT 100 81
        glnK 1036533 .. 1036545 +  -3.3  -3.35798   CCGTACCGGCGAATC                TGACG AAG CGGCA                TTGTAAATAACGCCT  49 7
        amtB 1037889 .. 1037906 + -11.3  -5.28561   TGATAAACAGCAAAA             CGGCAAC CCAG GTTGCCG              TTTTTATTGTGTATT 100 38
HRR29_RS04850 1040079 .. 1040096 +    -7  -2.55074   TGTTTGCGCAAGAAA             CCAGCA TCCGGT TGCTGG              TCGCTTGCAATTGGG  55 450
         ffs 1040362 .. 1040381 +  -3.7  -3.84406   TTATCGTGTAATATA            TATTTCA TTGCAC TGAAATA             TTATTGTCATAAACC  56 121
HRR29_RS04865 NONE
HRR29_RS04870 1041002 .. 1041042 +   -15   -4.5265   TTAAACCCTGACCAG  TGAAAACTGCTGACTGCA TATGT TACAGTCAGCAGTTTTTA  TTTTATGATCTGCTT 100 37
HRR29_RS04880 1043170 .. 1043183 +  -3.7  -4.21465   CATTGCGGAAATACC               CCAGC CGGA GCGGG                TTGTTTAATTTTGCG  62 4
HRR29_RS04885 1044386 .. 1044402 +  -7.9  -3.02461   TGAACGCTTTACCGT              TGCCCGG TGC CAGGGCA              TGTTAACCAAAATTG  61 72
HRR29_RS04890 1047543 .. 1047567 + -11.4  -3.01924   TAGCTGACCATGAAG          ATGCGGCCAC AGAGC GTGGCCGCAG          TCTTACGCCAGAATG  75 34
HRR29_RS04900 1048825 .. 1048858 +  -2.5  -4.57341   CAAGTAGCGTGCGTG     CCGAGGTTATTTTCT GCCC AGAGAATAAATTCCG      TTTTTGGCAGCGCTT  63 34
HRR29_RS04910 NONE
        rpmJ 1051033 .. 1051072 + -11.6  -2.72461   TTCCAGGGATCTTTT  CT-GTTTGCCATCGGCAGT AAA ATTGTCGGTGGCAAGCCAG  CTTTCAAAGGAGTTA  66 61
HRR29_RS04925 1053294 .. 1053305 +  -4.4  -4.40572   ATGAGAGCTGACCTT                TGGT GGAG ACCA                 TTTTCTGCAGCTTCT  67 53
        acrR 1060903 .. 1060931 +  -2.4  -3.38812   CTCAGAGGATAACGT       TCGCGCTATTCTG CTTT CAGCG-AGCGTGA        TATTCTTCACGCCGG  45 59
        mscK 1064666 .. 1064678 +  -9.1  -3.61715   TAGCTGCTGCTCTTC                CAGCG TCT CGCTG                TTGTTCAGCCGCGTC  66 361
HRR29_RS04980 NONE
         apt 1066228 .. 1066246 +  -8.8  -3.42574   TCCCGGTTTTCACAA             CCTCGCTC AAT GGGTGAGG             TTGTGATAGCATTCC  70 41
        dnaX 1068230 .. 1068248 +    -6  -3.47227   ATTCGCCCCATTTGA             TCGTGAGT CTG ACTTACGG             TTGTAATCCTTAAAC  56 26
HRR29_RS04995 1068595 .. 1068610 +  -3.2  -3.40403   TATGCAGCTGCCGCC              TGGCTT CAAG ATGCCA               TTCTGATGCAAACCA  47 4
        recR 1069219 .. 1069258 +    -7  -3.58533   CATAAGATTATTTTC  TGACCAAACGGAGGCTGC GCGC GCGGCCTCCGCTTGAAAA   TTTCCCCCCTTATCC  63 23
        htpG 1071395 .. 1071407 +  -3.3   -3.8917   ACTTTTGAGGGGATT                TTCGC AAT GCGTA                TTATTCTGCTTGGCG  56 214
         adk 1072054 .. 1072079 + -13.3  -2.59527   CGGCTAATCGCGCGC         CTCTCACCCGG GCTC CCGGGTGAGAA          ATATTCTCATCTTAC  81 34
        hemH 1073142 .. 1073171 + -10.6  -2.66249   CGCTGATCGCACTCC       GGGCCGGGTTTG TGCTAC CATTCCCGGCCC        ATATTCTTCGTACAG  71 35
HRR29_RS05020 1074508 .. 1074526 + -14.6  -4.97461   CAGGTAAAAGTAAAA             CGGCAACC TGT GGTTGCCG             TTTTTAGTGTTTGTT 100 34
HRR29_RS05035 1079782 .. 1079799 +  -9.9  -4.68645   CGCGAACACAAAAAA             CGGTAAC GCCT GTTACCG              TTTTGCTTTTACCTC  93 91
        cueR 1084544 .. 1084579 +  -5.3  -4.81083   ACGCTTGCCGACAAT    CTGCTGTCCGCGC TGGTTGAGGT GCGCGTCCAGCGG     TTTTTGCTCGTTAAC  79 190
        fetA NONE
        fetB 1088238 .. 1088266 +  -6.6  -5.84381   TAAGCCTGTTTTGTA       GGCCCGGTAAGCG TTAG CGCC-ACCGGGCA        TTTTTTTGTTAGTAG 100 38
HRR29_RS05100 NONE
HRR29_RS05105 1093694 .. 1093726 + -14.2  -2.78679   TTTAGCACGGTGATA      GTTGCGCACCGG GTTTTAATG CCGGTGCGCAGC      GTTTAAATAGCACAA  84 41
HRR29_RS05115 NONE
HRR29_RS05120 1097777 .. 1097789 +  -4.8  -2.73875   ATCTTCATTACTATG                GGAC TGAGC GTCC                TGATATTGAACCCGA  47 353
HRR29_RS05145 1102774 .. 1102787 +  -2.3   -3.2218   GCAAGAGGCGTATTA               CAGCC TATA GTCTG                TTAATGAGTATTACA  43 299
HRR29_RS05150 1103215 .. 1103228 +  -6.7  -3.26319   TTAACCCCTTAGCGG               CCTGA AGTA TCAGG                TTGCTATGAAGCCTT  57 78
        ltrA 1106870 .. 1106903 +  -8.9  -3.29471   CCGGTTCGGGGAGGA     GAGGCAGGGAAATAGT CCG ACTACG-CCCTGCCTC     TTACTCTACTCAGGA  68 73
HRR29_RS05185 NONE
HRR29_RS05190 1110402 .. 1110413 +  -5.8  -4.99035   GGCCAATTTGCCAGA                CTGG TGTT CCAG                 TTTTTGTATGAATAC  83 342
        merT NONE
        merP NONE
        merC NONE
        merA NONE
        merD NONE
        merE NONE
HRR29_RS05235 1116359 .. 1116388 +  -2.3  -3.55548   ACACATTCAGCCAAG       GGTAATAGATTTCA TCC TGACATTT-TTACC       TTTGGAGGCATCTTG  47 113
HRR29_RS05240 1116986 .. 1117009 +    -6  -4.30576   CTGTTGCAAATAGTC          GGTGGTGATA AACT TATCATCCCC           TTTTGCTGATGGAGC  69 53
HRR29_RS05245 1117820 .. 1117831 +  -7.2   -2.8805   CGATATGCCCAGTTA                CGGC TATC GCCG                 TGTGTGGGGCATCCT  56 111
HRR29_RS05265 1120104 .. 1120136 +  -3.9  -3.66999   ACTTTCTCCTCCGCA      CGTAATGCGGCCTGC ACC GCGGGCCGGGCAATG      ATTTTTTCCCTGTAC  54 126
HRR29_RS05275 1121783 .. 1121807 +  -9.2  -2.57132   TTGTAGGCCGGGTAA          GGCGTAGCCG CCTCC CGGCAATGCC          CTTCTGGAAGCCGCC  64 124
HRR29_RS05280 1122454 .. 1122474 +  -6.9  -3.60971   GATAGGTGGCCGGAA            TCCTGCT GGTTAGA AGCAGGA            TTTCGACCTTACGCT  63 48
HRR29_RS05290 1124215 .. 1124240 +  -6.9  -5.42259   TAACATTCTCCTCCA         CGTCCGCTTCTG GCA CA-AAGCGGACA         TTTTTTTCACAGTCA  90 38
HRR29_RS05300 1125136 .. 1125147 +  -3.6  -2.94144   GCTTTGTACCCAATC                CGCG ATAA TGCG                 TCGTTTACATACAAG  45 53
HRR29_RS05305 NONE
HRR29_RS05310 NONE
HRR29_RS05315 1127194 .. 1127224 +  -3.1  -3.85092   AGCGCGCCGTGATAA      TTGGCCGCCGCGAC GTTC GCCGC-GCTGCCGG       TTTGCTGTAAATCCT  55 499
HRR29_RS05335 1130988 .. 1131000 +  -4.7  -4.08692   AGAAAGCACCATCAG                CCCGG CGA CCGCG                TTTTGCAGCAGCTTG  62 355
HRR29_RS05345 1133185 .. 1133204 +  -3.4  -2.82516   CACGGAAAGCATCAC            GCTCGCCG GGAG CGTCCAGC             TCTCGTACTGCGCGA  44 438
HRR29_RS05365 1140846 .. 1140871 +  -9.7  -3.52896   TGCAGGTGCCACTTC         GAG-TAGCCCGC GTG GCGGGCAATCTC         TTCTATACGTAATGG  69 346
HRR29_RS05380 NONE
HRR29_RS05385 1143306 .. 1143323 +  -8.3  -2.83403   ATCTGCTTTCCTTTC             GCGCCCG CGAG CGGGCGA              ATTTCATCACCAGGA  62 107
        nfsB 1144005 .. 1144031 + -13.6  -4.18197   GAGTGCTGATCTCCT         CTGGCGCGCTGG GAT CCGGCGTGCCTG         TTTTCAATACCGCAT 100 32
HRR29_RS05395 1147032 .. 1147052 + -15.5  -3.40898   TTGAAATAAACCAAA            GCCCCATTC CTG GAATGGGGC            TATCTATTTTTTCGT 100 45
HRR29_RS05400 1148805 .. 1148846 +  -6.8  -2.78463   GGAGCGTTAGCCCCT GTC-GGAGGGGGTAAATACA ATCA TG-ATTTACCCTCTTCAGGC TCTAATGAACACGCT  56 66
HRR29_RS05405 1150587 .. 1150604 + -11.3  -5.10064   CGAAATCTATTTCAA             CCGCGTT GATT AACGCGG              TTTTTATATATTCAG 100 49
HRR29_RS05410 1150892 .. 1150908 + -13.7  -4.06384   GGGTAAAACGTGAGG              CCGGGCA TCC TGCCCGG              TTTGTCATATTGAAG 100 35
HRR29_RS05450 NONE
HRR29_RS05455 1159187 .. 1159200 +  -2.3  -5.68023   ATGCGGCTCAAGGAT               GGTCG TTTT CGGTC                TTTTTTTCATTGTAG  83 61
HRR29_RS05460 1160060 .. 1160073 +  -3.7   -4.7458   CCGGATAACTACTGA               CCCGG TAAA CCAGG                TTTATTTGTTCTGCT  71 26
HRR29_RS05470 NONE
HRR29_RS05475 1164150 .. 1164160 +  -8.2  -3.34398   CCAGCGCCATCAGCA                 GGCC AAA GGCC                 TCTTTCGGCAGCAGA  61 380
HRR29_RS05520 NONE
HRR29_RS05525 1175314 .. 1175325 +  -4.4  -4.86954   CAATTAATCAACATA                CAGA GATA TCTG                 TTATTTTTTGTTATT  73 432
        fimZ 1176338 .. 1176394 + -14.6  -2.72364   GCCCACGAGCTGCTA TAAC-CTGAATTCACTCCCTGCAGCTT ATCT GAGCTGCAGGGAGTGCGGTCAGTGCTA ATTATAATTAATCAT  86 23
        folD NONE
        ybcJ 1183787 .. 1183798 +  -7.2   -4.4009   AGAGCGTAACCGTTA                CGGC CTGA GCCG                 TTTTATGCCCTCACC  77 18
HRR29_RS05570 1185546 .. 1185570 +   -10  -2.69545   AGATGCCTGAACGAC          GCGTCTCCTG TAGTC TGGGAGACGC          ATTGTCGTATCTGAC  68 43
        malI 1186654 .. 1186666 +  -3.3  -3.29074   AATTTGACGCGGGTC                TGCCG GCG CGGGA                TTGCTGCTATATTTC  47 48
HRR29_RS05580 1187260 .. 1187293 +  -7.5  -3.53761   CGGCCCTCTCCCACG     GGGAGAGGGAG AAAACCTAATAA TTCCCTCTCCC      TTTGGGAGAGGGTTA  66 52
        ppiB NONE
        lpxH 1190170 .. 1190180 +  -3.2  -4.07877   ATTTTAATCAGCCCG                 TGGG CGG CCTA                 TTATTTATCACATCA  56 92
HRR29_RS05600 NONE
HRR29_RS05605 1190717 .. 1190734 +  -8.4  -5.56673   TAACATCATATAAAA             GACCGC CATCGT GCGGTC              TTTTTTGTTATCGCT 100 38
        purE NONE
        purK NONE
        mnmH 1193628 .. 1193645 + -11.3  -4.97461   GAGGTAAAAGCAAAA             CGGCAAC CTGG GTTGCCG              TTTTTAATGTTTATT 100 59
HRR29_RS05635 1196363 .. 1196382 +  -4.2  -3.28712   ACTTACAAAGTACAT            CCTAAGCG CCAC CGTTGAGG             TTATGAGCAGAAAAA  49 70
HRR29_RS05650 1199656 .. 1199673 +  -2.1  -3.00525   TTAAGGTTAACCTAA             GATT-TCA GAA TGATAATC             TCTGCTTTGCAGCGA  42 100
HRR29_RS05655 NONE
HRR29_RS05660 1202247 .. 1202259 +  -5.5  -3.71873   CTTTCCCACCCAGCC                GCGTG ACG CATGC                TTTGACTATCGCTAA  58 330
HRR29_RS05690 NONE
HRR29_RS05695 NONE
HRR29_RS05700 1209780 .. 1209801 + -11.5  -5.30616   TGCCCTGTACTGAAT           AGCCAGCCC TCCG GGGCTGGCC            TTTTTGTTTCGGTCA 100 28
        silR NONE
        silS NONE
        silE 1223567 .. 1223582 + -11.8  -5.38047   TGTTGTGAGATTTTT              GCCCCC GTCA GGGGGC               TTTTTTATCTGACTC 100 101
HRR29_RS05760 1224069 .. 1224084 +  -6.1  -5.40625   GTTAAATAATTAAAA              CCCGA TTAATT TCGGG               TTTTTTATATACTAT  89 106
        budA NONE
        alsS NONE
HRR29_RS05785 1229759 .. 1229780 + -10.1   -6.0427   CTCTGACATGAGTTT           TCCCCTGCA CCCG TGCAGGGGC            TTTTTTTTGTCTCCT 100 177
HRR29_RS05790 1230381 .. 1230405 + -14.2   -3.5627   CCCGGCCTGGAAAAC          CCGCGCGGCG CTCGC CGCCACGCGG          TTTACCCCATCCTGT  93 69
HRR29_RS05820 1236442 .. 1236454 +  -2.7  -4.76041   GCGGAAATGGCAATT                TCAAT CAA ATTGG                TTTTTCCTGACTGTA  69 81
        betT 1247560 .. 1247582 +  -8.5   -4.2828   CATATTGCAGCAAAA          GCCTG-ATGC TGAA GCATTCAGGC           TTTTGCTGCATCAGG  79 112
HRR29_RS05870 NONE
HRR29_RS05875 1248359 .. 1248384 +  -8.3  -4.08767   ACCGCTTTACCATAG         GCCTGATAAGCG TAG CGCC-ATCAGGC         TTTTAGCAGCGTAAA  76 101
         fes NONE
HRR29_RS05895 NONE
        entF 1257073 .. 1257101 +  -5.1  -3.68351   CGTCGCGAAGCGCAA        TCAGATGCGTCGC ATA GCGGCACGCCTGG        TTTAAGTCGTGCAGC  56 292
        entS 1261361 .. 1261380 +  -3.4  -4.64766   GCCCAGCTGGATGAT            GTCGTGGC GTTT GCCCTGGC             TTTTTGAGGTGTGCA  69 337
        entC NONE
        entE NONE
HRR29_RS05940 NONE
        dhbA NONE
        entH 1267166 .. 1267177 +  -5.8  -3.64049   TCTCTGGTTTGACCA                CGCA TTAT TGCG                 TTTCAAAGTTGTTAA  58 83
        cstA 1269366 .. 1269403 +  -9.1  -4.30987   AGGGGCGCACTAACC   TGTTTGCCGGGTGGCGGC TTC GCC-TTACCCGGCCTACA   TTTCTTCTCCGCCCT  83 28
HRR29_RS05960 1269837 .. 1269855 +  -4.5  -3.57039   GCGCAGGATACGCCA            CG-CGGCC TGCA GGCTGACG             TTCTCGTTATGCATG  53 205
HRR29_RS05985 NONE
HRR29_RS05990 NONE
HRR29_RS05995 NONE
HRR29_RS06000 1277781 .. 1277806 +    -9  -4.61566   CGCGGAGGCATAGCC        CG-GCG-CGCCG AGCG CGGCGTCGCGCG         TTTTCTCGTTTGCCA  86 328
        mtnA 1279856 .. 1279868 +  -4.7  -3.00704   GCAAACGGGAAATTC                GCCTG AGT CCGGC                TATCCTTTAAGGGAT  50 20
HRR29_RS06015 1280441 .. 1280458 + -12.7  -4.68645   AGCAAACACTAAAAA             CGGCAGC TCTA GCTGCCG              TTTTGCTTTTACCTA 100 92
HRR29_RS06035 1283621 .. 1283655 +    -5  -3.90112   CCAGGCTTCTGAGTA     ACGACGGTCTGC AAACAGCTCCA GCAGACCGTTGA     TTTGCTTGAGGCGCA  59 53
        ahpC 1287709 .. 1287726 + -12.7  -3.90112   CCATTCGGTAATTAA             TGGGCGC ACCC GCGCCCA              TTTCATTCCAGCACC  95 48
        ahpF 1289413 .. 1289434 + -15.9  -5.80817   CACCTGCAATAGCGA           GAGGCCACC GAAA GGTGGCCTC            TTTTTTTATCTTACG 100 59
HRR29_RS06070 1291473 .. 1291488 +    -9  -2.87132   GAATTTACGGAAAGA              GGATGC GGCT GCATCC               TCTGTGCAAAGCGGG  65 211
HRR29_RS06080 1293016 .. 1293040 +  -4.4  -4.17425   CTTTTGGCAACGGCA         CCGTCAAAGTCG CTG CGA-TT-GACGG         TTTTCCCGTAATTAT  64 221
        pagP 1296243 .. 1296261 +  -9.6  -5.21709   TGATGTACTGATAAC             CGACACAG CAT TTGTGTCG             TTTTTTAATGTAAAG 100 173
        cspE 1296524 .. 1296540 + -13.7  -5.79588   GCAAGAATTTCAAAA              CCCGCTC ACT GAGCGGG              TTTTTTTCGTTTTGA 100 54
HRR29_RS06110 1297938 .. 1297956 +  -3.8  -5.41143   ATCGTCGGTTTGCGC             CACCGCAA TTA TTGTGATG             TTTTTTTCAACAATG  81 9
        tatE 1298314 .. 1298330 +  -7.2  -5.82172   GCTTGCGAAAAAAAA              CCGGCT CATGA GGCCGG              TTTTTTTGTATTACT 100 56
HRR29_RS06190 1314108 .. 1314124 + -12.3  -4.93696   ATGGTAAAAGCAAAA              CGGCAAC CAC GTTGCCG              TTTTTAGTGTTTGCC 100 108
        ubiF 1325784 .. 1325812 + -20.5   -3.3782   CCTGAACAACAAAAA        CAAAAAAGCCCGC AGA GCGGGCTTTTTTG        TTACTTAAGTGGCTG 100 98
HRR29_RS06310 1335067 .. 1335090 + -17.4  -5.75342   AGAGTCATGCCTTAA          GCGGCGGGGG ATAT CCTCCGCCGC           TTTTTTTTGCAGCAA 100 53
        glnS 1336906 .. 1336922 + -13.7  -5.95539   TCAATGAGAGACAAA              CGCCGCA CTA TGCGGCG              TTTTTTTATTTAACG 100 55
        chiP NONE
HRR29_RS06325 1339154 .. 1339179 + -11.1  -5.00616   TGTTATAGCCCGTAG         GCCCGGTAAGCG CAG CGCC-ACCGGGC         TTTTTTAGGCAAAAA 100 85
        seqA NONE
         pgm 1344315 .. 1344334 + -13.6  -4.68645   AGAAAACACTAAAAA            CGGCAACC CCTG GGTTGCCG             TTTTGCTTTTACCTA 100 98
HRR29_RS06410 1356825 .. 1356845 +  -7.6  -5.96219   TAGCAATAAAAAAAA           CCGCC-ACA TTAC TGTTGGCGG            TTTTTTTTGTCCCTC 100 56
        phrB NONE
HRR29_RS06420 NONE
        pxpB NONE
HRR29_RS06430 NONE
        pxpA NONE
         nei 1362758 .. 1362777 + -12.2   -4.7416   GCAATAAAAGTAAAA            CGGTAACC CATG GGTTACCG             TTTTTAAGGTTTTCA 100 87
        sdhC NONE
        sdhD NONE
        sdhA NONE
        sdhB 1368210 .. 1368238 +  -5.9  -3.85698   GCTCGCAGGTGAACC        CCGGCACGTACAC GTG GTGTGCGTGGTAG        TTTCTACGGCGAAAG  63 220
        sucA NONE
        odhB 1372313 .. 1372324 +  -2.2   -4.1964   CCAACCCGTCTGCTG                CTGG ACGT CTAG                 TTTTGCAGTCTTGCC  58 14
        sucC NONE
        sucD 1374505 .. 1374522 + -12.7   -5.4833   CGTTTCGACATGGTT             GGCCGCT GTAA AGCGGCC              TTTTTTATTGCCTGC 100 87
        cydA 1376753 .. 1376763 +    -4  -2.60257   ACGCTAAGACAGGAG                 TCAT CAA ATGA                 TCGATTATGAAGTAT  45 34
        cydB NONE
        cydX NONE
        ybgE 1378336 .. 1378363 +  -3.4  -2.91689   AGAAATGTCCGTTAA        CGTTATGGGCTT ACCC GAGCCCATAAAA         ATTTACTCTCCGTTT  44 44
        ybgC NONE
        tolQ NONE
        tolR 1380007 .. 1380017 +  -3.2  -2.62184   TCATCCGCGTAGTTT                 TTGG GAA CCGA                 TAGTGTCAAAGGCAA  41 41
        tolA NONE
        tolB NONE
         pal 1383296 .. 1383307 +  -2.2  -2.52896   GGTTTACTAAGAGAA                TTGC ATGA GCAG                 TAACTTCAGACATCA  39 31
        cpoB 1384096 .. 1384137 +  -7.4  -2.78018   ATTCGATGGGATGAT TATCGCATGACCAGAAAT CGCGTT ATTTCTGGTCGTGCAGCA  TGATTCGTAAGCAGT  59 27
HRR29_RS06545 NONE
HRR29_RS06550 NONE
HRR29_RS06555 1384645 .. 1384659 +  -2.1  -3.10409   TGATAATTCAGGCAA              C-ACCC AAAA GGGTCG               TTAGCTCAGTTGGTA  42 58
HRR29_RS06560 NONE
HRR29_RS06565 1384846 .. 1384862 + -10.8  -4.84527   CCACCAGTGTAGAAA              GGCGCC CTAAA GGCGCC              TTTTTGCTATCTGCC 100 35
        nadA NONE
HRR29_RS06575 1387314 .. 1387339 +  -7.5  -4.09685   CACCCAGAACATGCA         GAGCCGCAGCG CGCA CGTTGAGGTTC          TTTTCCCCGCTGCCG  68 495
        aroG 1389645 .. 1389662 + -12.7  -5.97575   GGCACAAATAAAAAA             GCGCGGA AGGC TCCGCGC              TTTTTTTTATGCCTT 100 48
HRR29_RS06630 1397724 .. 1397742 + -13.1   -4.3467   TGATTCCCCACAAAA             CGCCCGG CGAGT CCGGGCG             TTTTGCTCTCAAGAT  95 38
        modA NONE
        modB NONE
        modC 1400699 .. 1400713 +  -4.2  -4.09511   GCACTCCAGACCCAG               CGTGTG TTC CACGTG               TTTTGCGAAGGTATT  60 311
         pgl 1402387 .. 1402402 + -10.4  -5.60993   GCTAAAAACAAAAAA              CCTCGC GAAT GCGAGG               TTTTTTTATGCCCGG 100 44
HRR29_RS06665 NONE
HRR29_RS06670 NONE
HRR29_RS06675 1406941 .. 1406954 +  -5.3  -3.01119   CTTACCTTGTGTGTG               CTTGT CTAT ACAAG                TATATCTAAATGCAT  50 98
        hutU NONE
        hutH 1410213 .. 1410235 + -13.4  -2.65339   GTGATTTTTGCCCTA           ACCCTCTCCC ACA GGGAGAGGGA           ATTGTCCGGTTTTCT  81 37
        bioB NONE
        bioF NONE
        bioC NONE
        bioD 1415976 .. 1416003 + -10.6  -2.78816   GTTTAAGCGCGCCAG        CAGCTGC-CCCAG CTT CTGGGCGAAGCTG        TGTCCTGCGCCGTGC  63 174
        uvrB 1419624 .. 1419649 + -11.1  -4.07687   ACCATCGGGGCAGGG         GTGC-GGCGCAG CGC CTGCGCCAGCTC         TTTTACCAGCAGAAT  85 369
        moaA NONE
        moaB NONE
        moaC NONE
        moaD NONE
        moaE 1423299 .. 1423319 +  -4.5   -3.6806   ACAGCGATAAACAAG            CCGCCAGCC GTT GGTAGTCGG            TTTACGTGGATGTGT  56 9
HRR29_RS06760 1424163 .. 1424179 + -12.3  -4.81644   AACAAACACTAAAAA              CGGCAAC AAG GTTGCCG              TTTTGCTTTTATTTC 100 101
HRR29_RS06780 1427792 .. 1427802 +  -2.4  -3.54424   TGATGTCCGTAAAGT                 GCCG AAT CGGG                 TTTACCCACGTCAGA  47 127
        rhlE 1434893 .. 1434912 +  -8.5  -5.26119   CGCAGTAATCTGGAA            GCCCGGT CGTAAA GCCGGGC             TTTTCTTTTTGCGGC 100 33
        dinG 1437231 .. 1437247 +  -5.7   -2.9834   GTAATAGCGGGCGGC              CAGCGGG AAA TCCGCCG              TGTGATTGTCCTGGT  48 96
        ybiB 1443717 .. 1443731 +  -5.6  -4.07568   CAGGCCGGGCTTGAA               CGCGTG GCG CAGGCG               TTTTAGACAAAAAAA  66 5
        rlmF 1446530 .. 1446547 +  -6.9  -3.88291   TTCTTCTACCGCATC             GCGCAGC GCCT GCTTCGC              TTTGTCCGCATCCTC  66 345
        ompX 1453752 .. 1453769 +  -8.4  -6.07627   TGAGCTAATAAAAAA             TCCGCC CAATGT GGCGGA              TTTTTTTTTGAAGGT 100 50
        mntR NONE
HRR29_RS06920 NONE
HRR29_RS06925 NONE
HRR29_RS06930 1460391 .. 1460402 +  -5.8  -2.52516   TTAAGAGCGAGGGGA                GTGC AGGA GCAC                 ATTGATGATACACAG  49 9
HRR29_RS06935 NONE
HRR29_RS06940 1463082 .. 1463109 + -14.2  -5.41746   ACAATAACCTTCCTT        GCCCCGGT-AGTG CAT CGCTAACCGGGGC        TTTTTTTCCCGCATT 100 34
HRR29_RS06945 1464607 .. 1464617 +  -2.4  -4.89339   GATGTAAGCCGTACG                 CTGC CGG GCCG                 TTTTTGTGACTGATT  67 34
HRR29_RS06965 NONE
HRR29_RS06970 1466717 .. 1466735 + -11.7  -4.11216   AGTGACAGCCGTATT             GTGGCCC TCATC GGGCCAC             TTTTCGCCATCAGCC  95 40
HRR29_RS06985 1470027 .. 1470044 +  -9.8   -5.2189   AACGGATAAAAAAAA             GCGGGC AACGAG GCCCGC              TTTTTTAATGCTTCG 100 32
HRR29_RS06995 1472458 .. 1472468 +  -6.8  -4.10429   AAACGCTTACAGCTT                 CGCT CAG AGCG                 TTTTAAGGCATGATT  71 110
HRR29_RS07000 1474298 .. 1474318 +  -3.9  -2.81291   CACGACTGATATCAG            CAGCTTTCA TTA TGTGGGCTG            GTTTAACGTTCTGCG  43 277
HRR29_RS07010 NONE
HRR29_RS07015 1477176 .. 1477188 +  -6.3  -2.55213   CTACATATTTTAGTT                TGTTG CCT CAACA                TAAGTTAAGTACCTA  52 215
HRR29_RS07020 NONE
HRR29_RS07025 1479249 .. 1479266 +  -2.7  -3.49866   ACAGACTATAACCGC             GCATTTA TCCG TCAATGC              ATTTTCTATTTATCC  49 88
HRR29_RS07030 1480126 .. 1480147 + -11.6  -3.53012   CTGTTGAAGGGGTGA           TGGAGGGG ATTCTC CCCCTCCA            TTTCAAGGGCAAGGA  86 141
HRR29_RS07055 1485509 .. 1485538 +  -8.5  -2.66522   CGAGAACTAAAAAAA       AGCCGGGTGGCGGC TTC GCC-TTACCCGGCC       TACGTTCTGTTCCCT  61 31
HRR29_RS07070 1490734 .. 1490748 + -12.8  -3.55801   CGCGCGGGAAGTCTC               CCGGCG ACG CGCCGG               TTTCAAGCGCTTCCT  81 120
         fsa 1497215 .. 1497234 + -13.6  -4.07246   GAGCACACACTAAAA            CGGCAACC TGAA GGTTGCCG             TTTGCTTTAACCTCC 100 89
        iaaA NONE
        gsiA NONE
        gsiB NONE
        gsiC NONE
        gsiD 1506041 .. 1506052 +  -3.6   -3.9122   GAAGCAGCCTACGCG                GTCC AGAC GGGC                 TTCTTTCAGGAAGTC  57 428
HRR29_RS07140 NONE
HRR29_RS07145 1509331 .. 1509349 + -10.2  -5.44119   AATATTGATTCAAGC             GCCGGGTT TTT ATCCCGGC             TTTTTTTCGCCTAAG 100 310
        bssR 1510075 .. 1510092 + -12.7  -3.52941   AACAGCACTGACCCA             GGGGGAG GCAA CTCCCCC              TTCTGATTAAGCTTT  88 30
HRR29_RS07160 1511323 .. 1511342 +  -6.4  -3.28785   GATCATTACCACGTT            GCGGTACGC CGG GCG-ATCGC            TTAGCTGTTTTAGCC  54 53
        dacC 1513438 .. 1513463 + -10.3  -2.53112   CTGTGGGAGAGGGCC         GGGGTGAGGGC ATCA GACCGCACCCC          CTTAATACATTAACT  70 95
HRR29_RS07190 1517172 .. 1517193 + -11.5  -2.69871   CTTCATCGTTATTGT           GCGGCGCTT CAAA ACGCGCCGC            CTCTTTGATGTGCGG  66 161
HRR29_RS07205 1520236 .. 1520247 +  -7.2  -3.62572   CTCATCAAGCGTTAA                CGCC TCAA GGCG                 TTTGCCCTGATCGTG  60 508
HRR29_RS07235 1525325 .. 1525343 + -11.7  -3.10464   CACCACAAATAAAAA             CGCCCTC CGGGT GAGGGCG             TCTTCGCATTACTGG  78 29
        nfsA 1526547 .. 1526569 + -12.8  -4.74453   ATTCCGCCTGCGCCT           GCCTGCGTAT ATG ATATGCAGGC           TTTTTCCATGTCTTC 100 44
        rimK 1527479 .. 1527496 +  -3.3  -3.13432   TGCCACGCCAGGCTA             CTGTCTG AAAA CGGGCGG              TTAAATGGTATTGAA  47 4
HRR29_RS07255 1528173 .. 1528214 +  -3.7  -5.33785   TTCACTGAACCTGTC TGACTTTTGCGCAGTCGCTG CCG TAGCGGCTGCA-GAAGGCCA TTTTTTCTGCTGCTT  81 33
        potF 1529720 .. 1529736 +  -9.4  -3.54741   CGCCGCCCGGCGATG              CGCACC CTGAC GGTGCG              TTTGCACCAGTACTG  72 116
        potG NONE
        potH NONE
        potI 1532735 .. 1532755 +   -14  -3.90048   AAAATTTCCAGTGAA            GTGCCGCG CATGA CGCGGCAC            TGTTTTTCAGGGAAG 100 48
HRR29_RS07280 NONE
        rlmC NONE
HRR29_RS07290 NONE
HRR29_RS07295 1536936 .. 1536970 +  -5.6  -4.62783   GCCATTCGTTCACCA     CGGCGGTATCGCCG AACACGC CGTCGATACGGCCA     TTTTTCAGGTCGATA  75 309
HRR29_RS07330 NONE
HRR29_RS07335 1542584 .. 1542600 +  -3.7  -4.63172   CTGATTTTTAAATCA              CATTCAC GGC GTAAATG              TTTTATAGTTTCCTC  67 86
HRR29_RS07340 1543462 .. 1543505 +  -5.3  -4.27584   TTTCATTACATTATT TGCCTGCGT-TCCTGCCG-TG GATT CATCTACAGGAGGCGCGGGCA TTTTCCCTTGCGAAT  69 80
        gspC 1546631 .. 1546641 +    -4  -2.52015   AAATATTCGGGTCAA                 TGTT CTT AACA                 ATTAATAAGTGTACA  44 10
        gspD NONE
        gspE NONE
        gspF NONE
        gspG NONE
        gspH NONE
        gspI NONE
        gspJ NONE
        gspK NONE
HRR29_RS07400 NONE
HRR29_RS07405 NONE
HRR29_RS07410 1556910 .. 1556938 +  -2.5  -4.06055   TCAGTAAATAACGTT        TGTCCATGTTT AATGGAA AAGCATGGGTA        TTTAATTTCACAAAT  55 221
HRR29_RS07415 NONE
        iagB 1560347 .. 1560358 +  -2.2  -3.71848   TTGTTTTTTGAAGAG                TACC GACT GGTG                 TTCTTCATAAAACGA  50 44
HRR29_RS07425 1562331 .. 1562350 + -13.6  -5.67967   CAGCAAAATGACAAA            CGGCAACC TTCG GGTTGCCG             TTTTTTTCTCATCGT 100 50
HRR29_RS07450 1568536 .. 1568546 +  -4.6  -3.51232   GACAGGCAGCCACTA                 CCGG CAC CTGG                 TTGCTTTCCAGCGCC  53 280
HRR29_RS07475 1575435 .. 1575452 +  -6.3  -3.91897   ACTGTCACAGAAAAC             GAGGGTAG CTT CT-CCCTC             TTTATCCATAAACGC  64 508
        macA NONE
        macB 1579132 .. 1579152 + -12.6  -4.18197   ACCCGAAAATAAAAA            TGCCAGCC GATCG GGCTGGCA            TTTTGACTGCGGGAT  95 40
        clpS NONE
        clpA 1582326 .. 1582341 + -11.8  -5.64274   CGTTAATGTTAAAAA              CCGGGC ATTT GCCCGG               TTTTTTTATGCCTGC 100 47
HRR29_RS07525 NONE
HRR29_RS07535 1589217 .. 1589241 + -18.7  -2.64062   TGCAGCACAAAAAAG          TAAGGCCGGGA AAA TCCCGGCCTTA          ATTAATATTCATCTG 100 137
         lrp 1596192 .. 1596228 + -15.2  -4.07568   TCCTGTTAATCCATA   CAG-CAACAGTGCCGGG GAGT CCCGGCGCTGTTGTCCG    TTTTAGCAAAAAGGC 100 79
HRR29_RS07570 1599950 .. 1599966 +  -2.1  -3.93369   ACGGTAACCGCGAGG              TGCTGGC ACC GCCGCCG              TTTGATTAACCTTCA  53 0
        lolA NONE
        rarA 1602106 .. 1602128 + -10.6  -4.56729   TTGGCAATGTATCCT           TGTGGCCGCA GGC TGTGGTCACA           TTTTCCTATTTTAAT  93 60
        serS 1603479 .. 1603492 +  -9.5  -5.65177   CCTCACAACAAAAAA               GCGCC TTTG GGCGC                TTTTTTTATGCCTCT 100 48
        dmsA 1606276 .. 1606296 +    -4  -3.77087   TGGCAGGAAGATAAC           GGCG-TCTG GCAT CAGAACGTC            TTTGCGTATTACCTG  56 189
HRR29_RS07600 1607628 .. 1607647 + -12.1  -5.75538   ATTGAGTTATATCAA            GCCGGGC CTGAGT GCCCGGC             TTTTTCTTTTTTCGA 100 47
HRR29_RS07605 1609041 .. 1609057 + -12.3  -5.29782   CCTGATTAATTAAAA              GCCTGTC GAT GACAGGC              TTTTTTGTCCCTGTC 100 36
HRR29_RS07610 1609687 .. 1609704 + -12.7   -4.9448   ATAGAATATAAAAAA             GCCCGGT TTTC ACCGGGC              TTTTCTTTAATACAT 100 37
HRR29_RS07635 1616831 .. 1616849 +  -3.1  -4.46212   GGCCAAACGTATCAC             CTGACAG CCATT TTGTCGG             TTTTGTCCTGGCGAG  62 22
        serC 1618101 .. 1618121 +   -14  -5.29716   TTTGCTGTTTTTCAC            CCCCGCAG CGTCC CTGCGGGG            TTTTTATTATGTTGA 100 41
        aroA 1619447 .. 1619468 + -14.5  -3.93369   GGCCTGATAACGCCT           TGCCGCATC GCCC GATGCGGCA            TTTGCTTACGCTTCA 100 34
         cmk 1620330 .. 1620354 +  -8.6  -2.87132   CGATTTAGCAGTACC         CCCGCTG-CAA GGGA TTGACGGCGGG          TATGTGAAACAACCC  62 48
        rpsA 1622195 .. 1622212 + -14.1  -4.00756   GTAATCAATAACAAA             GGGCGGC TACG GCCGCCC              TTGTTTAATGAGCTG 100 128
        ihfB 1622586 .. 1622599 +  -8.1  -5.77988   TGGGTTCGAAAGAAA               GCACC TGCG GGTGC                TTTTTTTGTCTCTGT 100 61
HRR29_RS07665 NONE
        msbA NONE
        lpxK NONE
HRR29_RS07680 1629053 .. 1629072 +  -6.4  -3.12668   TGGCTGGGAAACAGG            CACTCCCT GAAA AGGGAATG             TGTTAAGCTTTAGCG  57 16
        ycaR NONE
        kdsB 1630043 .. 1630064 + -14.5    -3.524   CGCTAATCCCGCCTG           CATCCCTCC TGTC GGAGGGATG            TTCTCTCCCTCGCTA  95 35
HRR29_RS07695 1631412 .. 1631428 +  -4.3  -4.07568   GGCGCCCGCTTCAGC              CGTACTC ACC GGGTTCG              TTTTGGCCGCCGCGC  60 368
        cmoM NONE
        mukF NONE
        mukE NONE
        mukB 1639210 .. 1639227 + -14.1  -6.10489   GTCTTCTGACCCGAA             GCGGCGC ACTG GCGCCGC              TTTTTTTTTAAACTT 100 44
        ldtD 1641250 .. 1641263 +  -3.7  -3.09803   AATAGGGGGCAATAT               CGCTG TAAG CCGCG                TATTCACTGGGGTTG  45 82
HRR29_RS07730 NONE
HRR29_RS07735 1642602 .. 1642618 +  -9.4  -5.60993   ACCAGAATAAAAAAA              GCCTGC ATAAC GCAGGC              TTTTTTTATGGACGC 100 40
HRR29_RS07860 1659136 .. 1659160 +  -2.1  -5.59357   TTAAAGCCGTTGGCT          TTAAGATGATC TAT GAACGCCTTAA          TTTTTTTCCTGTCAT  85 448
HRR29_RS07880 NONE
HRR29_RS07885 1661613 .. 1661637 +  -3.5  -3.61103   GCAGAAAAGGCGAAA         GCCG-CGGTG CTGGAA CACCAACGGC          TTTCAGATGGAATTA  51 43
HRR29_RS07890 NONE
HRR29_RS07895 NONE
HRR29_RS07900 1663711 .. 1663722 +  -3.6  -3.51557   AGACAATGTTTTTTA                CTGC GACT GCGG                 ATTTTCTTTCCAGAG  51 51
HRR29_RS07905 NONE
HRR29_RS07910 NONE
HRR29_RS07915 1664961 .. 1664990 +  -4.9  -3.52539   TGCCATTCACCGATG       GCGTCGTGTGACT GTTG AGCCATACGGCCC        TTATCCTTGGCATTA  56 191
HRR29_RS07925 NONE
HRR29_RS07930 1666602 .. 1666617 + -10.4  -4.87786   CAGCAGTAACATCCA              GGCCTC TCCG GAGGCC               TTTTTCTCGCGTTGA 100 32
HRR29_RS07935 NONE
HRR29_RS07940 NONE
HRR29_RS07945 NONE
HRR29_RS07950 NONE
HRR29_RS07955 NONE
HRR29_RS07960 NONE
HRR29_RS07965 1669579 .. 1669598 +  -8.5  -5.64421   GACAAAAAATTAACA            GCCTCGC CATCGT GCGGGGC             TTTTTTATTTGCGGT 100 92
HRR29_RS07970 NONE
HRR29_RS07975 1670558 .. 1670571 +  -4.5  -3.31157   CCCGTCGGCGTGAGG               CGGAG CGTG CTCTG                TTCATGTCGTGATTA  51 0
HRR29_RS07980 1671120 .. 1671137 + -10.5  -5.24129   ATAGAGAAAACCAGA             GCCTCGC AATA GCGGGGC              TTTTTTATGCCCGAA 100 14
HRR29_RS07985 1671838 .. 1671854 + -10.1  -3.11634   CGCGGCATTACAGGA              GCCCTTC ACT GAGGGGC              TTCGATAATGTCAAC  70 42
HRR29_RS07990 NONE
HRR29_RS07995 NONE
HRR29_RS08000 NONE
HRR29_RS08005 NONE
HRR29_RS08010 1678086 .. 1678114 +  -2.3  -2.71979   CACCAGTTTTAACAA        CCAGGCTTAACGG GAG CTCTCAAGCATGG        CTTACTTATCTCTTA  39 16
HRR29_RS08015 1678947 .. 1678959 +  -4.8  -2.61027   CTGGAACAACACCGA                CAGC TGCGC GCTG                GTCTTACTTTAATCG  47 1
HRR29_RS08020 1680041 .. 1680068 + -11.2   -5.0133   CTTTGAAGTGGTTAA        GCCTCTGCCGGG GAAA CTCAGCAGGGGC         TTTTTTACGAGGGTA 100 47
HRR29_RS08025 NONE
HRR29_RS08030 1680976 .. 1680987 +  -3.6  -2.83012   CCCAGCAGTTCGGCA                GCCT GTGG GGGC                 TGTCATGATCACCTT  44 6
HRR29_RS08035 NONE
HRR29_RS08040 NONE
HRR29_RS08045 NONE
HRR29_RS08050 NONE
HRR29_RS08055 NONE
HRR29_RS08060 NONE
HRR29_RS08065 NONE
HRR29_RS08070 NONE
HRR29_RS08075 NONE
HRR29_RS08080 NONE
HRR29_RS08085 NONE
HRR29_RS08090 NONE
HRR29_RS08095 NONE
HRR29_RS08100 1692841 .. 1692856 + -10.4  -4.65895   AGGATTGAATTATTA              GCCCAC TTAG GTGGGC               TTTTTAAGTCCAGAA  93 33
HRR29_RS08110 NONE
HRR29_RS08115 1694493 .. 1694506 +  -9.5   -5.4505   AAATCGTTAACCAAA               CCCGC TTCG GCGGG                TTTTTTATTGCCCGA 100 41
HRR29_RS08125 1695950 .. 1695972 + -16.4  -3.62096   TGTTTTCGTAAATGT           TTAGCCCACC CTG GGTGGGCTAA           TTTAACCTACTGAAA 100 226
        pepN 1699533 .. 1699550 + -11.3  -5.65678   CAGGTAAAAGCAAAA             CGGCAAC CTCG GTTGCCG              TTTTTTGTGTTTTCT 100 60
        pyrD 1705113 .. 1705142 + -13.7  -4.68724   TTTCTCTTAATCAGA       CAACCAGGGCT TTATTTCC AGCCCTGGTTG        TTTTATATTCCGTCA 100 44
        zapC 1706239 .. 1706260 +  -6.5  -3.86897   GCGTCTTCAGCGGTT           CGCCGGAAG GGTG CTTCTGGCC            TTTCTCAGGGCTCAC  64 462
       rlmKL NONE
HRR29_RS08185 NONE
        pqiA NONE
        pqiB NONE
        pqiC 1714531 .. 1714557 +  -8.7  -6.07969   ATTCATCATCAAAAA         CCGCAGTTGGC CTGTT GCTGATTGCGG         TTTTTTTTCGTTTTC 100 46
         rmf 1714957 .. 1714973 + -13.7  -3.74347   CTTTCAAAAAAGAAA              CCTCCGC AAT GCGGAGG              TTTCGCCTTTCTGGG 100 49
        matP 1718021 .. 1718035 + -12.8  -5.60993   TCAGACAATAAAAAA               CCCCGC ATG GCGGGG               TTTTTTTATAAGACG 100 54
HRR29_RS08235 1720890 .. 1720905 +  -3.2  -3.76224   TTGCTGAAGAACCAG              CGGC-GC TTT GCTGTCG              TTTCCTGGGTCAAGA  52 96
        helD 1725778 .. 1725789 +  -7.2  -3.60296   CCACACCGTCGCCAG                GCGC AGCA GCGC                 TTTAACATCCGGATC  60 221
HRR29_RS08265 1727438 .. 1727451 +  -9.5  -5.41746   AAGTAATAAAAAAAA               GCCCG TTAT CGGGC                TTTTTTTACACGCTT 100 35
HRR29_RS08280 NONE
HRR29_RS08285 NONE
        yccX 1730877 .. 1730900 +  -8.8   -4.0896   CTTCACCGGCTTAGG          CAGGCCGGCA ATTT TGGTGGCCTG           TTTTGCCGGGCCTTT  79 46
HRR29_RS08325 NONE
HRR29_RS08330 1738639 .. 1738661 + -16.4  -4.82154   TAGGGCATAAAAAAA           GGAGAATGCC ACA GGCATTCTCC           TTTTTCGTATCCGTT 100 38
HRR29_RS08340 1741314 .. 1741327 +  -6.7  -3.53091   ATTTTTACAGCGAAC               GAGTG CAGC CACTC                TTTACAGCACGCGGT  61 101
HRR29_RS08345 1741465 .. 1741489 + -14.4  -5.49568   TCCGCCAGATATAAA          CCCCAGGTTA CTCGT TAACCTGGGG          TTTTTCTTTTGCCTT 100 34
HRR29_RS08355 1742510 .. 1742527 + -12.7  -3.21912   AAGCGGAATAAACAA             CGCCACC CGCG GGTGGCG              TTCATGCATTGAACG  81 39
HRR29_RS08385 1748133 .. 1748156 + -15.4  -5.46698   CCGCCAAATTCGAAA          CCCTGCGATA GCAA TATCGCAGGG           TTTTTTCGTTTTACA 100 35
        uraD NONE
        uraH 1752710 .. 1752733 +  -5.2  -2.78384   TGCCCGCGCCGACGT          CGGTGCCGAT GCCC ATCCGCACCC           TGTGCTGCCAGCAGG  47 355
HRR29_RS08425 NONE
        hpxA 1756857 .. 1756869 +  -6.3  -2.85176   CGTTAAGCGGACATT                TTCAG GCA CTGAA                TCCATTTTAATTTTT  54 3
        puuE 1758133 .. 1758151 +  -2.3  -3.76402   CCGGCGGACGGGCGC            GCCGC-CC GAAA GGCGCGGA             TTTCATCAATCCCGT  51 331
        hpxU 1762525 .. 1762564 +   -18   -2.5369   ATTGAAATGGTGCAT  CTGACGGGTCGGGAAAAC ATAC GTTTTTTCGACCCGTCCG   CGTTTTATCAGGCTT 100 65
HRR29_RS08465 NONE
HRR29_RS08470 NONE
HRR29_RS08475 NONE
HRR29_RS08480 NONE
HRR29_RS08485 NONE
        hpxK 1768337 .. 1768350 +  -3.1  -3.53012   GCGGCAATCATCAGC               GAGGT GGTC ATCTC                TTTACGCAGCACGCG  49 378
HRR29_RS08500 1770115 .. 1770143 +  -3.9  -4.25104   GATCTCCGCCATCAT       CGCG-TTAAGCG CCTCGT CGCTTAAGCCCG        TTTTGGTAAACGCCG  62 177
HRR29_RS08510 1771191 .. 1771219 + -12.4  -3.02511   CTACTGTTTTGCGTA       GCGCG-GTGCCGG AATG CCGGTGCGCGCGC        TGTTGAACAGCTCAA  80 42
         agp 1774159 .. 1774173 +  -5.6   -3.8579   TAAACTTGCCCATTC               GCCCAC GTG GTGAGC               TTTGGATTCTTGAGT  61 251
HRR29_RS08540 1775393 .. 1775412 + -16.4  -6.02919   CGGGTTGAACCCCTG            CCGCCGGG ATCT CCCGGCGG             TTTTTTTATTTCTGC 100 46
HRR29_RS08545 1776431 .. 1776457 +  -4.4  -2.62616   ACAGGCTTATTTACG         ATGTGTACGG ATAAATA CCGTACACGG         TGATGTAAACCATGC  45 49
HRR29_RS08550 NONE
HRR29_RS08555 1777299 .. 1777334 +  -9.7  -2.91144   GTTCTGAAGGAATGT    ACACGTCGGGTGATG CCTGGC CGTCACCCGACATGG     TGATTTCACGAATCC  69 58
        rutR 1784144 .. 1784161 + -12.7  -3.61517   TCCCCAAAAAAATAA             GGCTCCG TCTC CGGAGCC              TTATTAGCACAGCGT  88 511
        putP 1790092 .. 1790117 + -16.1   -5.4505   CGCAGCACAATGCAG         GCCGGGTGAGC GCAA GCGCACCCGGC          TTTTTTCTTGCCAAA 100 48
HRR29_RS08615 1790612 .. 1790629 + -14.1  -4.26938   CAGTTCTAATAAAAA             CGGCGGG AAAT CCCGCCG              TTGTTGTTTTGTAGG 100 32
HRR29_RS08625 1792924 .. 1792941 +  -4.1  -2.68404   GCGTACCGGCACGCA             GGCGT CGCGCGTT ACGCC              ATAATTTTTGTTTTA  45 4
HRR29_RS08630 NONE
        efeB 1795403 .. 1795435 +   -10  -5.22312   CTTATTGAAGCCTGA     TAATTGTCCCCGCAA CCGT TCGCGGGGAC-ATTA      TTTTTTCATATGACT 100 26
        phoH 1796707 .. 1796730 + -14.6  -5.47914   GTTTGCTGTTGTGTT          CAAGGCCCGG GAAA CCGGGCTTTG           TTTTTTGTGCTTTTT 100 41
HRR29_RS08665 1800230 .. 1800240 +  -3.2  -4.25873   CATGATTCTTAAATG                 TGCT GAA AGCG                 TCTTTTTTATCAGCA  60 384
        ghrA 1801284 .. 1801299 + -11.8   -4.8083   GGCTACTGAGAGAAA              CCCGGC GTTC GCCGGG               TTTTTGCTAATATTC 100 32
HRR29_RS08680 NONE
HRR29_RS08685 1802740 .. 1802776 + -15.4   -3.2592   TGCTTCTGATCTCAT   TTCTATGGTGCGCATCT GCTA AGATGCGCGCCAT-GAA    TATATTACTTTGTAT 100 90
HRR29_RS08690 1803247 .. 1803291 + -16.8  -3.26947   ACATCACTGCGGTGA GCGAATAAAAAAAGGCGAGAT AATC ATCTCGCC-TTTTTTATGCGC TTCCTGTCAGGATTC 100 18
        csgB NONE
        csgA 1807378 .. 1807393 + -10.4  -5.41746   TGTGCTACAAAAAAA              CAGGGC ATCA GCCCTG               TTTTTTTCGGGAGTT 100 51
        csgC NONE
HRR29_RS08730 NONE
        ymdB 1808886 .. 1808908 + -19.2   -3.0169   GAGAGCTGATGCAAA           CGCGGCGCAT CTG ATGCGCCGCG           TGATTTATGAGGCTT 100 32
        mdoG NONE
        mdoH 1814428 .. 1814447 +  -9.3  -5.43866   ACCCGCCATATAAAA            TACCGGC TTAATC GCCGGTA             TTTTTTTAGAGGTTA 100 72
HRR29_RS08755 1814974 .. 1814988 +  -2.1  -3.56318   TTTTGGATATTAAGC               TGTTG CACGT CAGCA               TCTTCTTCTTCAACG  47 306
HRR29_RS08775 1818733 .. 1818763 + -14.7  -2.54401   CCCGGAATGATAATA      ACGCCCGGCACGGC GAAA GCC-TGCCGGGCGA       ATCTATTATGATTTC  86 31
        rimJ NONE
HRR29_RS08830 NONE
HRR29_RS08835 1827905 .. 1827917 +  -4.1  -3.27704   GAAATCCGGTTAGAC                TAAGC GCC GCTTG                TTGGCTTTGCCGGGT  49 73
        murJ 1829742 .. 1829754 +  -3.3   -5.1101   TGCTGGTTAAGGTCG                CGCAG GTG CTGGG                TTTTTTCGGTAATGG  78 245
        flgB NONE
        flgC NONE
        flgD NONE
        flgE NONE
HRR29_RS08880 1834809 .. 1834823 +  -2.1  -2.66538   CCAACTTCTGGCTAT               GAGTT AACAG GACTC               CTTATGATCAGTTCT  39 19
        flgG 1835613 .. 1835645 +   -12  -2.78508   ACGCAACTCTAAGGT     GTAGCCCGGTGCGGT AAAC GCCGCACCG-GCTCC      CTGTTTTCGAAGATG  77 29
        flgH NONE
HRR29_RS08895 NONE
        flgJ 1838436 .. 1838477 + -10.9  -2.89191   TGTTCTGAAAGTTCT CAAGTCCCGGTGGAGGTTG CCGA TAACCTTCATCAGGACTCG  TGTCTGAACGTATAA  74 33
        flgK NONE
        flgL 1841158 .. 1841181 + -15.4  -5.93809   CTGGGCATGTTTTAC          TGCCCAATCC GTCT GGATTGGGCA           TTTTTTTTATGCAAC 100 71
HRR29_RS08920 1843456 .. 1843473 + -12.7  -4.98531   GCAGCCATAAAAAAA             GCCGACC ATAA GGTCGGC              TTTTTACTTTCAGCG 100 31
        rluC 1848160 .. 1848177 +  -7.7    -4.946   AAGGTAAACGTAAAA             CGGCAAC GAAT GTTGTCG              TTTTTAATGTTTGCT  88 39
        yceD NONE
        rpmF 1849749 .. 1849768 + -12.2  -3.53012   AGGCTTAGTGAGGAT            TTCCCCGT GCAA ACGGGGAA             TTTACCGAACCAGGC  88 59
        plsX NONE
HRR29_RS08955 NONE
        fabD NONE
        fabG 1853724 .. 1853737 +  -2.3  -4.25848   TACACTACGAAAACC               ATCGC GAAA GCGAG                TTTTGATAGGAAATT  58 267
        acpP 1854005 .. 1854031 + -13.1  -5.06052   GGCGTAAGTGAACAT        CTCCAGGCGGTC ATTC GACCGCCTG-AG         TTTTATCTTTTTTAG 100 34
        fabF 1855357 .. 1855373 +  -7.2  -5.45652   GATAGCTTTTAAAAA              GGTCCG CTTGC CGGGCC              TTTTTTATTAAGCCT  91 53
        pabC NONE
        yceG NONE
HRR29_RS08990 NONE
        holB 1858909 .. 1858923 +  -2.8  -3.05531   CACCGCCAGTTTCCC               ATCTCT GAG AGAGAC               ATTATGTTTTTAGTC  43 18
HRR29_RS09000 1859771 .. 1859794 + -14.6  -2.50821   TAAAGCGAGTAAAGT          TCACCGCCTC ATTT GGGGCGGTGA           GTGTGTATTTAGACA  86 75
        ptsG 1861474 .. 1861491 + -12.7  -5.76237   ACATGGGGAGACTAA             GGCAGCC GAAT GGCTGCC              TTTTTTATTTGTGTC 100 47
        hinT NONE
HRR29_RS09015 NONE
        lpoB NONE
        thiK NONE
        nagZ NONE
HRR29_RS09035 1865535 .. 1865559 +   -15  -4.85782   CCCGCATGCATCAAA         GCCCGGC-CGC GAAA GCGTGCCGGGC          TTTCTTTTTGACCAG 100 48
HRR29_RS09040 1867063 .. 1867087 + -17.9  -4.71482   TGCACTAATCTTTCA          CTCCCTCCGGG CCC TCCGGAGGGAG          TTTTTAGCATTTCAT 100 33
HRR29_RS09045 1867810 .. 1867836 +  -8.8  -6.23209   TGTTCTCTGAATTTA        GCTCCTCATGC GCTCAG GC-TGAGGAGC         TTTTTTTTTGCTTCA 100 47
HRR29_RS09055 1869013 .. 1869059 + -18.2  -3.65902   ACCCTCATTTATGCC GCTGCAATAAAAAACGCCCTGC TGA GCAGGGCGTTTTTTATTTCCGA TTTACATCGACTGCG 100 52
        lolC NONE
        lolD 1877426 .. 1877442 +    -3  -2.80195   CTGATGGGAGCAGAG              TAATGG CGTCA CCGTTA              TCGTTACTCATCGGT  42 23
        lolE NONE
        nagK NONE
        cobB 1880490 .. 1880510 + -14.7  -5.38958   GGCAATCGCCTAAAA            GGCACCCGT CCA GCGGGTGCC            TTTTTATTTATGAAT 100 42
HRR29_RS09105 1883905 .. 1883960 +  -2.3  -3.86194   GGGCTGGGGAGAACG CGGTCAGTTAATCCTCCTCACGCCG CACGTA CGGCGTGAGGAAGAACGCGATACCG TTTATCGGCCCGCTT  53 15
        pepT 1890790 .. 1890803 +  -3.1  -3.33261   CCAGCGCCGGACGGT               GC-GGA GAG TCCAGC               TTCTCGCCGTTAACG  47 257
         icd 1899854 .. 1899873 +  -9.2  -5.83822   TGGGTTAAACAAGAG            CGGGGGCC TGAG GGTTCCCG             TTTTTTTTGCCTCTG 100 50
HRR29_RS09185 NONE
HRR29_RS09190 1901069 .. 1901091 +  -7.7  -2.71188   TTTTGCTTATAATGC           TCGCTGATG CCGTC CACCAGCGA           CTTATCAATTTTGAT  54 520
HRR29_RS09200 NONE
HRR29_RS09205 1905781 .. 1905813 + -14.3  -3.02144   GTGAGCAATGTCGTA      CTGAATACCTGAGTG TTA CGCTCAGCTATTCAG      TGTTGAGAAAGATAA  88 89
HRR29_RS09210 1906271 .. 1906288 + -10.5  -4.68593   ACAAGCGTGAAAAAA             GGCTGCC AGAT GGCGGCC              TTTTTACGTAGTGGC  93 46
HRR29_RS09225 1908163 .. 1908179 + -10.9  -2.73364   CTTTAGGATTATTCT              TAGCCAG TCC CTGGCTA              TCGTTACCGTGAGAG  73 70
HRR29_RS09230 1908906 .. 1908946 +  -4.2  -3.72695   AGATCGGTAGTCTGA  GGTTCCTTATGTTA TCTGATAATACTC TGGCATAAGGAACC  TTTCATGGAACACCT  56 427
HRR29_RS09240 1909909 .. 1909935 +  -5.1  -3.14132   AGCTGGCGCGCAGAC         CGATGAACGTC AGGCC GAGGGTCATCG         TTGCTCCGGAGCCAA  47 276
HRR29_RS09250 1911935 .. 1911947 +  -4.8  -3.71649   AAATCCCCACCGCGA                TCGC CACCA GCGA                TTTCCAGTTTACAAA  56 191
HRR29_RS09260 1912455 .. 1912476 +    -3  -3.86897   AAAAGGCTGACAGGG           GCGTCAGCC ATCGC GGTT-ACGC           TTTGTGGAAGGTCAC  54 31
HRR29_RS09280 1917577 .. 1917594 + -14.1  -4.07246   ATCTATGCATCAAAA             CGGGGCG CTTG CGCCCCG              TTTGCTTTAGCGTGG 100 61
        msrB NONE
HRR29_RS09300 1920682 .. 1920699 +    -7  -2.64155   CTCCCACAGGGAGAG             GGCGTA AAAGAC TACGCC              TGCGTTTCCAGCCAG  55 60
HRR29_RS09320 1925010 .. 1925054 +  -6.5   -2.8084   TCTGATAACGCACCT AAACTGTCTGGATTCTGAG CATCTGC CGCAGAATTCAGACAGTCA TACTTACCTCTTTAT  54 36
        selD NONE
HRR29_RS09330 1928337 .. 1928357 +  -3.3  -4.62471   AATATCCAGCATGAT           GTGG-TGC AGGCGC GCATCCAC            TTTTTCCGCCTTCCA  69 286
HRR29_RS09340 1930090 .. 1930105 +  -6.1  -3.03124   ATCCGCAGGGGCTAA              GGCGT AGCCAA ACGCC               TCTTCCGGCGTACAC  52 60
HRR29_RS09350 NONE
HRR29_RS09355 1931953 .. 1931985 +   -12  -3.46106   TTCCATATGGGTCGC     GTCGCTGCCCGCATG ACCC CA-GCGGGCACCGGC      TATTTCACCTTTTGG  76 292
HRR29_RS09390 NONE
        astA NONE
        astD NONE
        astB NONE
        astE 1944371 .. 1944386 +  -3.2  -4.11371   CTTTTCTTAACGATT              AAAGCG CTTG CGCTTG               TTTTGCAGAATATTC  56 81
         spy 1945168 .. 1945218 + -11.4  -5.33405   TTCACACTCTTAAGA CCGCCGGGATCCTGTCCACA AAAGCGCAACCGC TGTGGACAGGA-C-CGGCGG TTTTTCTTTCCTGCC 100 45
         ves 1946380 .. 1946412 +  -4.8  -4.15044   AAGCTGTAAATCGTC     CGC-CAGCGTCTGCAG CGC CTGGAG-CGCGGCGCG     TTTATTGGCAAACAG  64 402
        osmE 1948470 .. 1948485 + -11.8  -5.64274   GAGGATGTTAACAAA              CCGGCC CATG GGCCGG               TTTTTTTATGCATCA 100 53
        chbB 1949083 .. 1949102 + -12.2  -2.77431   TTTCACACACAATAC            GCCGTAAC ATGC GTTACGGC             ATTTAAGGGTATTTT  79 67
        chbC NONE
        chbA NONE
        chbR 1951724 .. 1951746 +  -3.3  -2.61027   CGGTAATTAATTAAC           TTTCGGCGG ATTAC CCGCCACAA           ATATTGCTTTAATGG  43 27
HRR29_RS09460 NONE
        chbG 1954221 .. 1954270 + -18.8  -3.36492   CGGCCACCTTCAGGT GCGCCTTAAACCG-TCGCGC-GTC GCCG GACAGCGCGATCGGTTTCAGGTGC TTATAGGCTTCCAGC 100 298
        cedA 1956777 .. 1956806 + -16.7  -3.56568   GAGGAATAACAGCCA       TAAAAAAACCGCC ATCA GGCGGTTTTTTTA        TTTCGACCGTAATTA 100 32
HRR29_RS09495 1960389 .. 1960419 + -10.6  -3.28712   CGGTTTTCTGTAAGC      GATAA-GGGTGGC GGCAAG GCCACCCGTTATC       TTCTCAGGCGGCAAG  74 28
HRR29_RS09515 1963779 .. 1963802 + -12.4  -4.39329   AGAATGTAATAAAAG          CGGGCCGATG ATGA TGTCGGCCCG           TTTATTGTCTGCGGT 100 32
        thrS NONE
        infC 1966967 .. 1966992 +  -4.7  -4.66987   CTTCAAGCAGCAAAA         TCTGTGGAGCC TTCG GGTTTCATAGG          TTTTGTTCGCCTATG  72 44
        rpmI 1967248 .. 1967258 +  -2.6  -5.14965   CGTACGCATAAGCCG                 TTAA CGT TTAA                 TTTTTTACTAAGAAT  75 30
        rplT 1967662 .. 1967680 + -12.4  -4.54727   ATAAGCCAGTTGAGA             GAGGGGGC TTT GCTCCCTC             TTTTCATTTAACACC 100 37
        pheM 1967868 .. 1967883 + -10.4  -5.64274   AACAGCGCCAGATAA              GCCTCC CGAT GGAGGC               TTTTTTTGTGCCTGA 100 51
        pheS NONE
        pheT NONE
        ihfA 1971663 .. 1971678 + -11.8  -5.64421   TGAACTAACTAAAAA              GGCCGC CCAC GCGGCC               TTTTTTCTTTGCGCT 100 43
        btuC NONE
HRR29_RS09575 NONE
        btuD NONE
HRR29_RS09585 1974635 .. 1974661 +  -7.3  -5.26316   ACACTTCTCTTATGA         CGGCATGGTCT CTAAT AAATCATGCCG         TTTTTTCTCAAATAA  87 51
HRR29_RS09590 NONE
HRR29_RS09595 1977127 .. 1977164 + -12.1  -3.14132   CTGTTCAAGCTAGCG   ATTTTGCCGGGTGGCGGC GTC GCC-TTACCCGGCAAAAA   TTACTGCGCAACCCA  79 28
HRR29_RS09625 1983181 .. 1983196 +  -4.6  -2.71712   CAAACGTGCAGATGA              CCCCGA CGGG TCAGGG               ATTTCAGCAGGCGCA  44 203
        ppsA 1993834 .. 1993855 + -11.6  -5.74086   ACGCTGACCCGAAAA           GGCGAGGA TATTAT TCCTCGCC            TTTTTTATTTCATTT 100 45
HRR29_RS09675 NONE
HRR29_RS09680 1998110 .. 1998145 +  -8.3  -2.57423   TATCATGCGGGAAAG   TGTAGGCCGGGTGAGCG TTAA CGC-CACCCGGCA-GCA    TACCTTAATGCGTGT  61 308
HRR29_RS09695 NONE
        menI NONE
HRR29_RS09705 2003226 .. 2003241 + -11.8   -5.4251   ACATGAGAATAAAAG              GGCCGC GAGT GCGGCC               TTTTTTGTGTCTGCA 100 43
HRR29_RS09730 NONE
HRR29_RS09735 2008994 .. 2009006 +  -6.9  -6.23317   TCACTGATTAACAGA                GGCCT TGA GGGCC                TTTTTTTGTTTTTGT 100 34
        sufA NONE
        sufB NONE
        sufC NONE
        sufD NONE
        sufS NONE
        sufE 2014843 .. 2014868 +  -9.7  -4.72486   AGCATTCATTCTGTT         TC-GCGAGGTGG TTC CCGCCTCGCTGG         TTTTTCAGCTTTCTG  93 52
HRR29_RS09770 2015951 .. 2015969 + -14.6  -4.63932   CGCAGGCAAAAAAAA             TGGCGCAC AAT GTGCGCCA             TTTTATTAACAGGTA 100 49
HRR29_RS09795 NONE
HRR29_RS09800 NONE
HRR29_RS09805 2023799 .. 2023827 + -24.7  -5.36441   ACTGATTTTACAGAT        GAAGCCCGGCGAG TCT CTCGCCGGGCTTC        TTTTTTGTATCCGGC 100 44
        fumD 2024179 .. 2024198 +  -6.4  -3.66844   AGATAAAAATGGCCG            CCGGGT AGATTTGC ACCCGG             TTGTTGACCTGTCCC  61 104
HRR29_RS09835 2027644 .. 2027685 + -14.7  -4.08767   GTGACGTTTAACGAG TGAAATAAAAAAGCACCGG TTTC CCGGTGCTTTTTTATTAGA  TTTTGCAGGCGTCGC 100 81
HRR29_RS09845 2028801 .. 2028811 +    -4  -2.75229   TAAAAGAGACATTGC                 TATG CAA CATA                 TCATTGAAGGTTTTC  45 97
HRR29_RS09850 2029500 .. 2029510 +  -8.2  -4.57341   AATCTGCGCCGCGAT                 CCCG ACG CGGG                 TTTTTCCGCCGCCTT  83 88
HRR29_RS09875 2033739 .. 2033760 + -14.5   -5.0538   AAGAAGAATAAAAAA           TAACCCCGG GCAT CCGGGGTTA            TTTTTTAGCGTGCGA 100 30
HRR29_RS09890 2037531 .. 2037544 +  -4.5   -4.1711   TGAACTTCAATAGAC               TGCGA CTCT TCGCG                TTTGTTGACGATCCT  64 119
        ynhF 2038921 .. 2038939 + -10.4  -4.73635   GGATTGTTACTTCTC             TGGCAAAA ATC TTTTGCCA             TTTTGTTAACTTCTC 100 79
HRR29_RS09905 2040206 .. 2040229 + -16.8  -3.09273   GGAATAAACCAAAAA          CGCAGAAGGG CGAA CCCTTCTGCG           TGTCTCTTACGCGGC 100 34
        grxD 2042420 .. 2042437 + -11.3  -6.22691   TGCGCAAATAAAAAA             GCGACCT GATA AGGTCGC              TTTTTTTTATTCTTC 100 46
HRR29_RS09950 NONE
HRR29_RS09955 2048465 .. 2048476 +    -3  -3.36991   CCGCCTGAAGGTGAC                TTTC CGGT GAAA                 TCTTTGCCCCTGGTA  47 42
        sodC 2049362 .. 2049382 + -10.4  -3.40611   AGCGCAGCAGCCAGC            GCCGGGAC AGCGC GTCCTGGC            TGTTATTCAGCTGGC  69 339
        slyA 2052797 .. 2052816 + -13.6  -5.95166   ACTGACAAACAACAA            GGCCTTGC AGCA GCAAGGCC             TTTTTTTTACTTAAA 100 36
        anmK NONE
        mliC NONE
        pdxH 2057384 .. 2057408 + -12.8  -4.49353   AATTTGTTGATTTAA          GCGCTAGCGC ACACC GCGCTTGCGC          TTTATTCTATTGTCC 100 48
        tyrS 2058775 .. 2058796 + -17.3  -5.42198   AATTAACAGTCTCCA           GGGGCGTGG GAAA CCACGCCCC            TTTTGTTTTTTCAGG 100 39
        pdxY 2060022 .. 2060042 +  -2.5  -3.06501   ATCCGGGCGGAACAA            CGGCGTAAA ACC TTTGTGCAG            TTCGGTCGCAATGTA  41 359
HRR29_RS10080 2071462 .. 2071477 +  -6.8  -2.65751   CTCGCGGCTCAGACC              CGCCTGC GGT GC-GGCG              ATGTTGTATTCGTGG  50 187
HRR29_RS10100 2076572 .. 2076587 + -10.4  -4.25074   CCCGGCAATAAAAAA              CCCCTC GTGC GAGGGG               TTTTGACGTTTACTG  90 126
HRR29_RS10115 2081386 .. 2081412 + -10.1  -2.51872   GTAATTCTGTAAATT        GCCGGGT-GGCG CAGA CGCTTGCCCGGC         CTATATTCTCGTAGC  67 37
        fumC 2083326 .. 2083342 +  -3.7  -4.79223   CCAGCTGCGCCAGAA              TTTCATC CCG GGTGAAG              TTTTTAATGATGTGC  75 400
HRR29_RS10145 2087085 .. 2087107 +  -9.2  -3.51934   AGCAGCTGGTGAGCA           GGTAATCCAC GAG GTCGATTACC           TCTTTCTCGCCCGGC  69 87
        pntA NONE
        pntB 2093779 .. 2093794 + -11.8   -5.7946   GTTGAAACGAAAAAA              CCGCCG AATT CGGCGG               TTTTTTTATTGCCGG 100 46
HRR29_RS10200 2098289 .. 2098299 +    -4  -3.91911   TATAGTTGCTAATAA                 CTAA CTG TTAG                 TTTCATTCAGATACA  58 88
HRR29_RS10220 2101892 .. 2101923 + -13.7  -2.71011   TATTCCCTGATGAAC      CTGGGCGTCCTGG GGCAGG CCAGGACGCCGGG       TGCTTACACAACCGT  83 31
HRR29_RS10230 NONE
HRR29_RS10235 2104771 .. 2104790 +  -5.6  -3.34013   AATTGGTAGGGAGGC            GCCGTCCGG TGG CCAG-CGGC            TTCATTAAACGCCTA  56 32
HRR29_RS10240 2105631 .. 2105641 +    -4  -4.30978   GATCCTTTTGAGCAT                 CAAT CTG ATTG                 TTTTGATGGGTTAAA  64 78
HRR29_RS10255 2108661 .. 2108685 +  -5.5  -3.60627   CCTGGCCCGGTGCTC          CGCGGCCGCCA TAA TCGCGGCATCG          TTTGCCATCCCCTGA  55 264
HRR29_RS10280 2115627 .. 2115638 +  -5.8  -4.62302   CGGGTTAAACGTGGC                GACG CCCA CGTC                 TTTTTGCGCGTCTTC  75 108
HRR29_RS10295 2118171 .. 2118213 + -14.1  -3.94409   CTATCCGGGCGCTTA TCGCGAAGACAGGAGGGGC AATAC GTCCCTCCTGTCAGCGCTA TTTATGGCTCATATC 100 84
        mdtJ NONE
        mdtI 2120368 .. 2120390 + -17.8  -3.09492   TCTCGCCATGATTTA           CAGGCAGCGA AAT TCGCTGCCTG           TATTACGCTTAGAAA 100 47
HRR29_RS10315 2122882 .. 2122912 +  -9.6  -3.31263   CGTCACCTTTCGGTC       GGCGGCTTTCAGCG CGG CGGTGAGGGCGGCC       TTGTCGCCGTCAAAT  66 315
HRR29_RS10345 NONE
HRR29_RS10350 2130241 .. 2130266 +  -2.6   -3.6422   GTATAACGGCTCGCT         GTTGATCC-GC CTGCT GCAGGGTTAAC         TCTTTTCCGCAGATG  49 1
        bioD 2131133 .. 2131161 +   -11  -2.71924   CGCAGGCGACCAGCA        GGCCGGGAAGTA AAAAA TACTGCCCGGTC        ATTTCACAGACCATC  73 67
HRR29_RS10395 NONE
HRR29_RS10400 2139259 .. 2139284 + -11.8  -2.75382   GCGATACAAAAGCTC         CAGCCGCCGC TGTGAT GCGGCAGCTG          TACTTACGTCAGGTA  76 11
HRR29_RS10435 2147108 .. 2147119 +  -4.4  -3.11445   CCCTTGACCTGAGAA                TCCA TCCA TGGA                 CTTTTCCCGCTTTTT  47 42
        oqxB 2150293 .. 2150313 + -15.5  -5.50499   GCCGATAATAAAAAA            CCGCCTTCA TTG TGAAGGCGG            TTTTTTTACATCTGA 100 48
HRR29_RS10460 2154143 .. 2154168 +  -6.8  -3.27525   TTGCGGTAATTAAAG         CCGCTCCG GTTGAGATGG CGGGGCGG          TTCCCTTTGCAGACA  59 78
HRR29_RS10470 NONE
HRR29_RS10475 2157546 .. 2157558 +  -6.9  -3.28712   AAGCTGATTGCACTC                CGGCT CGC GGCCG                TTCTCGGCCAGCCAC  56 245
HRR29_RS10495 2161734 .. 2161753 +   -15  -2.64155   CTACTGAGAATAAAA            CCGCGCAG GTTA CTGCGCGG             TCGGTTTCAGCAGGC  90 34
HRR29_RS10510 2163111 .. 2163128 +  -3.3  -4.51097   TGTGGCGGGATGGGG             GC-GGGCC TGA GGCCCCGG             TTTTGTGATCGTTAG  65 16
HRR29_RS10515 NONE
HRR29_RS10520 2165496 .. 2165515 +  -9.3  -2.94416   CCTATACGCGGTTAA            GAGCCTG CGCAGA CAGGCTC             TATGTGGTACGCATC  67 42
HRR29_RS10525 2167072 .. 2167116 +   -10  -4.05446   ATTCTAGTTGGTGTA GTCAGCAGGC-GCTGCCGCTTC AGA GGAGCGGCAGCGGTCCAC-GAC TTTCTAATTAACGAG  83 177
HRR29_RS10530 2168617 .. 2168646 + -12.8  -3.21912   AGTTCAGCACATGCC       GCCGTGCGCGGC GGCATG GCTGCGCACAGC        TTAGTGCATTCCCAG  81 39
HRR29_RS10540 2169576 .. 2169600 +  -9.2   -2.5499   CGTTCGCTAATCACC         TCGCCGCACCC GAAA GGG-GCGGCGC          ATATTACTCTTCGCT  64 31
         dcp 2173329 .. 2173345 + -10.8    -5.626   CGTCAGAAAAAAAAA              CCGGGC TTTAC GCCCGG              TTTTTTTATAGGCTC 100 50
HRR29_RS10560 2176244 .. 2176260 + -10.8  -5.19328   AGCGCAAATGAAAAA              CCGGGC TTCTC GCCCGG              TTTTTGTTATCCGCT 100 61
HRR29_RS10575 2179623 .. 2179640 +  -8.4  -3.18023   CGGCCTGAGAGTCAA             CCAGCC CGCCGC GGCTGG              TGTTGATGATCATCA  63 323
HRR29_RS10585 NONE
HRR29_RS10590 2181945 .. 2181959 +  -9.2  -3.24735   AAACATGCGACAATA               GTCGGC ACT GCCGGC               TTAAATCTTTCGCTA  68 190
HRR29_RS10595 NONE
HRR29_RS10600 2184802 .. 2184812 +  -6.8  -3.17622   GAAACCCTGCTGAAA                 TCGC GCA GCGA                 TCTGTTCTGAGGATG  59 5
HRR29_RS10605 2185380 .. 2185398 +  -6.6  -2.52464   AGGCTGCGCACGGAC             ATGCCGCT CTC GGCGGCAA             TCCATTCCGGGCGCA  48 258
HRR29_RS10615 2187809 .. 2187826 + -11.3  -5.61913   CTAGTAAAAGCAAAA             GGCAACC TGGA GGTTGCC              TTTTTTGTGTTTGTT 100 37
        paaA NONE
        paaB NONE
        paaC NONE
        paaJ NONE
        paaK NONE
HRR29_RS10665 NONE
        paaB NONE
        paaC NONE
        paaI NONE
        pcaF 2204197 .. 2204213 +  -2.9  -3.57144   GGGTCAGGGCATTGC              CATGATC CTT GAGCGTG              TTTGAGCATAAAAAC  49 4
        paaF 2205592 .. 2205620 +  -8.9  -3.53761   CGGCCCTCTCCCAAA        GGGAGAGGG TGTAAACAGTT CCCTCTCCC        TTTGGGAGAGGGTTA  72 55
        paaX NONE
        paaY 2207637 .. 2207677 +  -6.8  -3.62096   CGCGGGATGAATTTA GGCTGATCGCCCGCGTG-GC CGA GCGCACGCTG-CGGGTAGCC TTTGAGCTGCTGGGG  63 424
HRR29_RS10710 2209168 .. 2209183 + -11.8  -4.36914   ATGGAAAATAATGAA              GCCGCC AACT GGCGGC               TTTTGTGCAGGAAGG  95 155
HRR29_RS10730 NONE
HRR29_RS10735 2213534 .. 2213552 +  -4.4   -4.2828   CCGCAAAGTCCAGCA             GCGGAAGG ATC CCATCCTC             TTTTGGTAAATGCGC  67 312
HRR29_RS10745 NONE
HRR29_RS10750 2214928 .. 2214957 + -14.3  -2.90573   AGGTGATAACGAGAC       ACGCGCTTCCTTC TGGC GAAGGAGGCGCGC        CTTTGCTGTGACTGG  87 100
HRR29_RS10785 2222653 .. 2222673 +  -9.7  -3.61902   CGCCGGGTGAGAGGA            GGCCGCA AAACCGA TGCGGCC            TTATCTGTCATGCAG  75 42
HRR29_RS10800 NONE
HRR29_RS10805 2225967 .. 2225988 +  -2.9  -2.67992   CCCTCTCTGATTTGA           ACCGCAG GAAATCGA CTGCGGG            TAATGTAATACTCTA  41 41
HRR29_RS10810 2226553 .. 2226592 +  -7.8  -2.62184   CAGCTGGGCGCGCTG  TAAATTCATCACTCCGGG GCGG CCCGGAGTGATGCAAAAA   TCCTATAAGCCAAGA  58 23
HRR29_RS10820 2228074 .. 2228084 +  -5.4  -3.21436   CCTTCGGTGAGACTT                 CCTT TGA AAGG                 CTTTTACTGTAGGTT  51 355
HRR29_RS10830 NONE
HRR29_RS10835 NONE
HRR29_RS10840 2230371 .. 2230385 +  -5.6  -3.92745   CTGTTCAATACCGCT               CGACTG CGC CAGACG               TTTGTAGAGCTTTTT  61 390
HRR29_RS10855 NONE
HRR29_RS10860 2232361 .. 2232374 +  -3.8  -3.16742   CAGCGCGCGCTGCTG               CGCA GGATGG TGCG                TTCATGAACATTGCG  47 5
HRR29_RS10865 NONE
HRR29_RS10870 NONE
HRR29_RS10875 NONE
HRR29_RS10880 NONE
HRR29_RS10885 NONE
HRR29_RS10890 2237186 .. 2237200 +  -9.2  -3.72893   CGAGGGGATGTCCGT               GCTCGC TGA GCGGGC               TTTACTGCCCGAGTA  72 103
HRR29_RS10905 2239147 .. 2239157 +  -8.2  -3.66921   ATAATCTCTGCGCCG                 GCGC TGA GCGC                 TTTCAGCTTGCCGTT  66 67
HRR29_RS10935 2243662 .. 2243720 +  -8.7  -3.60792   ACCACCCGATAGCGG GAGCGGGCGGGTTTTCCGTTGATGGCG CAAAT CGACATCAGCGGGAACAGCGCCGGGTC TTTGGCAATTGGCGC  66 301
        hrpA 2249078 .. 2249091 +  -4.5  -3.61764   CCGCACCCCCAGCAC               GCG-CG CGT CGTCGC               TTTGCCCGTTAATCA  53 219
HRR29_RS10975 2255037 .. 2255061 +  -9.9  -2.76442   TGTTCCCCTCACCCT          AACCCTCTCCC ACA GGGAGAGGGGA          TGCTTCACTGCTCAT  69 235
        cybB 2256836 .. 2256861 + -11.1  -4.79949   TAGTCTTTAACGCTT         GCCGGGTAAGCG CAG CGCC-ACCCGGC         TTGTTTTTTTAACCC 100 38
HRR29_RS11000 NONE
HRR29_RS11005 2278903 .. 2278928 + -16.1  -4.45261   AATTGCGTAAAACAA         CGCCGCGGGGA GCGA TCCCCGCGGCC          TTTTGCGTTTCTTTA 100 31
HRR29_RS11010 NONE
HRR29_RS11015 2282471 .. 2282497 + -11.6  -2.60496   GCTGGATTATACGGT         TGACGTCACGTT GTG AGCGTGGCGTCG         CTCTTTAGGCACAAC  76 70
HRR29_RS11025 2285097 .. 2285109 +  -4.7    -5.093   GCTAAGAAAAATAAA                GCCCC GAA GGGCC                TTTTATTATTTTCGA  81 36
HRR29_RS11045 2288186 .. 2288200 +  -2.7  -3.08508   TGCTGCTTTCGTGTA               CTGGC GATAA GCCCG               TGGTTTTACGCCATG  41 415
HRR29_RS11055 2289317 .. 2289358 +  -8.1  -5.53288   TGAGTATCGCTGAGG CTATCAGCTGCTCGTCGCTA AAG TA-CGTCCAACAGCTGATAG TTTTTTTCAGTTCGC 100 98
HRR29_RS11065 2291773 .. 2291806 +  -2.2  -2.52104   TTAAAGCATCCTGAT     GACAGAGCGGCCTG ATACAC CGGGCCGTTCAACC      CTCTTAATCATATTT  39 27
HRR29_RS11070 2293051 .. 2293070 + -11.4  -3.81951   GAATTAACATCCGAG            CCGGCAGC GCTT GCTGTCGG             TTTACTAATCTGGAG  86 39
HRR29_RS11075 NONE
HRR29_RS11080 NONE
HRR29_RS11085 2295397 .. 2295421 + -11.4  -4.52345   GACAAGTAACTCTTC          TGCCGGCGGT TTTTC ACCGCTGGCG          TTTCTTTAATAATCT  95 32
HRR29_RS11090 2297264 .. 2297279 + -10.4  -4.67556   ACCGGGCAAAAAAAA              GGGACC TTTC GGTCCC               TTTTTCACATCTTAT  93 47
HRR29_RS11115 NONE
HRR29_RS11120 NONE
HRR29_RS11125 2304471 .. 2304485 +    -5  -2.70932   ACTCAGGTGGAGGTT               CTATGG CTG TCATAG               TGATTACCGGCGGGA  47 41
HRR29_RS11130 2305543 .. 2305559 +  -3.5  -3.40403   TTTTACCGCAAATCA              GCGCGTC ATC GTAGCGC              TTGTCCTCGAGACAG  47 109
HRR29_RS11175 2313850 .. 2313860 +  -2.4  -3.83998   GAAACGCGCAGCAAA                 CAGC GTT GCGG                 TTTGCTCTGAAATCG  53 5
HRR29_RS11180 2315481 .. 2315497 +  -2.9  -5.02439   TTCGCGCAGCACCAG              CCGGT AGCTTGC GCCGG              TTTTTATGCTTGTCT  76 87
HRR29_RS11190 NONE
HRR29_RS11195 2318328 .. 2318357 +  -9.9  -4.74801   AATAACCGCCTCATT       AGCCCCGGCG-AAC GAT GTCGCGCCGGGGCA       TTTTTAATACACTTC 100 36
HRR29_RS11200 NONE
        rimL 2321409 .. 2321427 +  -8.1  -2.67386   CCTGGTGCACAATGC             GCGACTG GCTGA CGGTCGC             CTTATCGTAGATTTT  53 511
        tehB 2322648 .. 2322658 +  -4.6  -3.21395   AGCAAGCAGGCAGAT                 CTGC AGG GCGG                 TGTTGTAAGACGCCT  49 46
HRR29_RS11225 2325568 .. 2325590 +  -9.9  -3.68071   ATCAGTAATTTTTCA          CTGCCCGGCA CGCT TGC-GGGCAG           TCTTTTCGCAATTTG  79 33
HRR29_RS11230 2326379 .. 2326397 + -11.7  -5.27335   GAAATAAAATAAAAC             GGCCTGC TTAAT GCAGGCC             TTTTTATTTACGCCA 100 34
HRR29_RS11240 2328795 .. 2328813 +  -3.7   -4.3739   ACCGGAGGCTTTCAT             CGTGGCG AACCC CGGCGCG             TTTTGTGAGGCCATA  65 473
HRR29_RS11250 NONE
HRR29_RS11255 2332418 .. 2332432 +  -2.9  -5.11937   AAAAAGAATGCGGGA               TAATC ATGTC GATTA               TTTTTTAGGGTTATT  75 285
HRR29_RS11265 2333115 .. 2333131 + -10.1  -6.06723   CCATGCAAGCATTTA              CCGCCAG TTA TTGGCGG              TTTTTTTTTGCGCAG 100 143
HRR29_RS11280 2335693 .. 2335707 +  -4.2  -3.53012   ATTTTTTTCAACAGC               CGTGAA ATT TTCTCG               TTTGCCGGAACAGAA  53 47
HRR29_RS11285 2336939 .. 2336975 + -11.6  -2.58758   TCTGGTAAAGCCTCA    TCCACAGCGCTGCATT ATAAA AGTGCAGCGCTGTGCC    ATTCTGAGACGTTCT  76 33
        urtA NONE
        urtB NONE
        urtC NONE
        urtD 2341866 .. 2341879 +  -2.3  -2.74999   TGAGGTCTATCTGGG               GCGCT AAGG AGCGA                TGATGTTACAGGTTA  39 19
        urtE 2342593 .. 2342630 +  -5.7  -3.09175   TAAAATGTTATAATA   TAACATCCGCATTCT TATAAAAC GGAATGAGGGTGTTA    TGTTGGCTGCACATT  52 38
        zinT 2343265 .. 2343277 +  -3.3  -4.16016   GGTAGAGGAAATGCT                GCACC ACT GATGC                TTTATTGCCGGGTGG  59 16
        eamA 2345751 .. 2345779 +  -6.1  -2.52464   GGTCATGTGCTGACG        GCAAAATCATCGT ATC AGGATTATTTTGC        TGCGTTGCACGAGGG  48 162
HRR29_RS11345 2347725 .. 2347735 +  -2.4  -2.72144   ACCCTGTTCCTCCAG                 CGCC ACC GGCC                 ATTTACGGAAGATGA  39 96
HRR29_RS11355 NONE
HRR29_RS11360 NONE
HRR29_RS11365 2351738 .. 2351759 +  -5.1  -3.55444   TGGATGCGCGGATAG           CGCTGGT TAAACTGC GCCAGCG            TTTCGGGAATGCGCA  53 517
         sad 2353581 .. 2353613 + -14.2    -4.053   TTTATCTCCCGCCTG      TGATTACGGCCCTC ATCAC GAGGGCCGTTGTCA      TTTATCTGCAATGGT 100 41
HRR29_RS11380 NONE
        glsB NONE
HRR29_RS11390 NONE
HRR29_RS11395 2358227 .. 2358244 +  -4.1  -3.15257   AAGCGGCTTAACAGG             ATGTCAG AACA CTGACAA              TGTCTCTGTTTAAGC  49 77
HRR29_RS11400 NONE
HRR29_RS11405 NONE
HRR29_RS11410 2361449 .. 2361464 + -11.8  -3.91798   TTGCTAATGACGTTA              CCCGGC TTCG GCCGGG               TTTAATTACACCTTA  95 34
HRR29_RS11415 2362701 .. 2362713 +  -3.3   -4.4572   CGGTGGCTTTCGGGG                CGCGT AAT ACGGG                TTTGTTTAGCGTATT  66 171
HRR29_RS11425 NONE
HRR29_RS11430 NONE
HRR29_RS11435 NONE
HRR29_RS11440 NONE
HRR29_RS11445 2366888 .. 2366907 +  -2.2  -2.55074   TGACGCGGACAAGCT            CTGAAA TGTGCTAT TTTCAG             TACGTTACCCTTCGG  39 22
HRR29_RS11450 NONE
HRR29_RS11455 2368964 .. 2368980 +  -5.1  -4.12532   CCATTACGCTACCGC              GCCGT TAATTGT ACGGC              TTTGTATCTCCCGGC  64 18
HRR29_RS11460 2370346 .. 2370380 + -11.6  -3.03159   GCCGCGGAAAAGCGA    GCAGTATCTGC-CCA TTTTCC TGGAGCGGATACTGC     TCTTCCAGCAGTTCA  69 74
HRR29_RS11470 2372286 .. 2372306 +    -7  -3.22774   TCGCTCACGTGGCGA            CAGAAAAA CATTC TTTTTCTG            TTGATGCTGGCTATA  56 229
HRR29_RS11485 2374816 .. 2374827 +  -4.4  -3.28712   GTAGTCTGGCGTGCC                CTCA TCGA TGAG                 TTCTACACCAAGCGG  49 311
HRR29_RS11510 2378088 .. 2378146 + -20.6  -2.83271   GCATAATGTTCCACA CGTTATGTTGAAAAGGCCGCTGCG AAAATCTCTCC CGCAGCGGCCTATTTAGCATAACG TCATTGTGCGCATCA 100 163
HRR29_RS11535 NONE
HRR29_RS11540 2381385 .. 2381397 +  -7.7  -3.28309   TTCTGGAATAAACAT                GTCTG CAA CAGAC                TTCGATTCTCTGTAT  62 30
HRR29_RS11545 2381829 .. 2381846 + -12.7  -2.78813   TTCAACCATTCATTT             GGGTGGC GTCT GCCACCC              CTTATTAAGGTAGCA  79 57
HRR29_RS11550 NONE
HRR29_RS11555 NONE
HRR29_RS11560 2384981 .. 2384997 +  -4.4  -3.85864   TCCGATTCTTTCTCA             GA-GCCG GTTC CGGCATC              TTCTTATGATGGTGA  58 315
HRR29_RS11570 2387087 .. 2387098 +  -7.2  -3.02263   ATTGATGATACTAAC                GGCC CACC GGCC                 TGTTGAGGAACCTGT  57 95
HRR29_RS11580 2388248 .. 2388263 +  -2.6  -5.56568   GAGTGCCGCCTTCAG              CTAATCC AGG GGAT-AG              TTTTTTTCCTCATAT  82 61
HRR29_RS11610 NONE
HRR29_RS11615 2392230 .. 2392242 +  -7.7  -3.28309   TTCTGGAATAAACAT                GTCTG CAA CAGAC                TTCGATTCTCTGTAT  62 30
HRR29_RS11620 2392674 .. 2392691 + -12.7  -2.78813   TTCAACCATTCATTT             GGGTGGC GTCT GCCACCC              CTTATTAAGGTAGCA  79 57
HRR29_RS11625 NONE
HRR29_RS11630 NONE
HRR29_RS11635 2395826 .. 2395842 +  -4.4  -3.85864   TCCGATTCTTTCTCA             GA-GCCG GTTC CGGCATC              TTCTTATGATGGTGA  58 315
HRR29_RS11645 2397932 .. 2397943 +  -7.2  -3.02263   ATTGATGATACTAAC                GGCC CACC GGCC                 TGTTGAGGAACCTGT  57 95
HRR29_RS11655 2399093 .. 2399108 +  -2.6  -5.56568   GAGTGCCGCCTTCAG              CTAATCC AGG GGAT-AG              TTTTTTTCCTCATAT  82 61
HRR29_RS11670 2400811 .. 2400851 + -12.8  -4.87665   GCGCTAAGGGTTCAT CCCGTAAAAAA-CCCGCCA TCGC TGGCGGGTTTTTTTATGGC  TTTTTATGCCTGCGC 100 34
HRR29_RS11695 NONE
HRR29_RS11700 2409786 .. 2409806 +  -8.2  -5.12707   CCAGGTCGACCAGCC            CCTCACGC AAATA GCGCGAGG            TTTTTTCAGGTTTCG  91 508
HRR29_RS11710 2411863 .. 2411894 +   -10  -3.53091   TCAGGTGTTTCGCCA      CCGCCTCGCGCAGC GCCT GCTGCGCCGGATGG       TTTGCGGGAAGCGCT  71 158
HRR29_RS11730 2415286 .. 2415304 +  -8.1  -2.63596   CACGGTTTCGGTGAA             CGCTGTC CCGGT GGCAGCG             TCCTCTGCCGTAGAC  53 91
HRR29_RS11750 NONE
HRR29_RS11755 2423106 .. 2423124 +  -5.9  -3.94409   GCCACCCGGCTTCTG             CGCTGTG CTATC CACTGCG             TTTATAGGTCCTATC  63 69
HRR29_RS11760 NONE
HRR29_RS11765 2425574 .. 2425592 +  -5.2  -3.59979   GTTGCTCTGCACGGC             CGCGTAGA GCG TCTGCACG             TTTCCCGTCACCAGC  55 496
HRR29_RS11775 2427591 .. 2427614 + -13.2   -4.6313   ATAGGGAAATTTCGG          GCGTATGGCC CGCA GGTCATACGC           TTATTTTCTTTTCAA 100 37
HRR29_RS11805 NONE
HRR29_RS11810 NONE
HRR29_RS11815 NONE
HRR29_RS11820 2438056 .. 2438075 +  -4.2  -2.56124   ACGCCGCAAGGAGGA            CGCCGTGA AGTT TTACCGCG             ATCTGTTTGAATCCA  44 18
HRR29_RS11825 NONE
HRR29_RS11830 NONE
HRR29_RS11835 2443335 .. 2443367 +  -2.5  -4.33851   TCCGTCATAAAATGA      GCGAGGGAAAAGGAA AAT TGCCGCTTCCCCTGC      TTTCTTGTACCCTTT  58 26
HRR29_RS11840 NONE
HRR29_RS11845 2445023 .. 2445049 + -19.6  -5.43866   GAAGCTAAATGCCAT         CAGGCAGAAACG CCC CGTTTCTGCCTG         TTTTTTTACGGCTTC 100 33
HRR29_RS11925 NONE
        ddpX 2463479 .. 2463494 +  -3.2  -3.48924   TAAACCTGGAGCACT              GCCATG AAAA CATCGC               TTCTCTCGACGCTGA  49 38
HRR29_RS11935 NONE
HRR29_RS11940 NONE
HRR29_RS11945 NONE
HRR29_RS11950 NONE
HRR29_RS11955 2469034 .. 2469048 +  -4.9  -4.25104   CTTCCGGCACCAGAT               CGCCG AGACC TGGCG               TTTTGATCGGGCCCG  64 201
HRR29_RS11965 2470697 .. 2470710 +  -3.7  -4.62475   TTCAGGAGCTGCGAG               ACCGG ACAG CCGGC                TTTTGCTTTCTGAAT  70 98
HRR29_RS11975 2472635 .. 2472654 +  -9.2  -3.65046   CATCAATGCGCTCTC            CCACCAGG CTGA CCGGGTGG             TTATTCACGTCCAGC  72 509
HRR29_RS11985 2474149 .. 2474163 +  -2.8  -2.93737   ATCTGAACCACAACC               GGGAAA ATA TTTGCC               ATTCTGTTTATGAAT  42 178
         bdm 2474464 .. 2474482 +  -3.8  -4.08485   CTGCTAAGCTGGATC             TGCAACCT AAG GGGTTACA             TTTCGTTTGCGTAAG  59 45
         sra 2474693 .. 2474727 + -13.7  -4.21142   GTTCCAGACTGAGAT     CCAGAACACCATCGG TAATC CCGATGGTGTTTTTG     TTTATGTGTTGCGGT 100 41
HRR29_RS12000 2476565 .. 2476589 + -20.1  -3.68886   AATCCGCTCCGACCG          GTCCCTCTCCC TTC GGGAGAGGGAC          TTTCAATAAATTCAT 100 39
HRR29_RS12005 2478972 .. 2479001 + -16.5  -3.65542   GGCACAGCTGTAAGT       CTGCGCCCGGCGAG TCT CTCGTCGGGC-CAG       TATTTTCCCCCTAAA 100 28
        adhP 2480194 .. 2480212 +  -9.5  -5.61596   GTTCATCTTTCATTA             CCGCTCC TCGCT GGGGCGG             TTTTTTTATAGCCAT 100 43
HRR29_RS12015 NONE
HRR29_RS12020 NONE
HRR29_RS12025 NONE
HRR29_RS12030 NONE
HRR29_RS12035 NONE
HRR29_RS12040 2487744 .. 2487754 +  -2.4  -4.27316   GATAAAGCCCATGAT                 CAGC GAG GCCG                 TTTTCAGTTCACCAA  62 329
        ppk2 NONE
HRR29_RS12065 NONE
HRR29_RS12070 2491418 .. 2491449 + -10.7  -3.30128   CCTGTCTGCGCAAAC      TCAGCGCCGCCGG GCAAAG CCGACGGCGCAGG       TCTTACTTCATTCCT  77 63
        yddG 2497355 .. 2497369 +  -2.8  -2.92267   TATTAACGTCATGGA               TAGCAT TAA ATGCAA               TAATTCATTTCTGAC  42 236
HRR29_RS12095 2498902 .. 2498920 + -10.3  -5.96219   CTTGTCTGTACAAAA             GCCAGCT GAATA AGCTGGC             TTTTTTTTATCCGTC 100 43
HRR29_RS12105 NONE
HRR29_RS12110 NONE
HRR29_RS12115 NONE
HRR29_RS12120 2503577 .. 2503591 +  -5.6  -3.53012   TTGCACAGATTTATT               TGGGCG AAA TGCCCG               TTTAACAACACCAGC  58 6
HRR29_RS12125 NONE
HRR29_RS12130 NONE
HRR29_RS12135 2506988 .. 2507011 +  -7.3  -5.14965   GGGTCAAAAAGACGG          CGGAGCCCG CCACTC TGGGCACCG           TTTTTTGCTGAAGCT  90 508
HRR29_RS12150 2510880 .. 2510893 +  -6.7  -3.24924   GCGCCTCAGCATCCG               GCAGA TGGA TCTGC                TCTTCTACGTGACCG  54 202
HRR29_RS12160 2512723 .. 2512735 +  -4.8  -3.21912   GACCGGATAGCCCGC                CAGC ACGCC GCTG                TTCATCGCTTCCCGC  49 478
HRR29_RS12170 2515024 .. 2515053 +  -5.1  -4.49939   ATAGTTGGCTTCATG       CGT-ATGCCAGTAA AGG TGACTGGCATGATG       TTTTCTGGCTTCTCT  70 181
HRR29_RS12180 2517453 .. 2517464 +  -5.8  -4.39426   AACATTTTTCTGACT                GAGC TGAA GCTC                 TTTTCTGACAATGTC  69 443
HRR29_RS12195 NONE
HRR29_RS12200 2522229 .. 2522258 + -18.7  -3.22884   CGCTGTAAGCCTCGA       TCCAGCCCTCACT GCAC GGTGAGGGCTGGA        TTGCTGCCTTAATGC 100 33
HRR29_RS12265 2534493 .. 2534519 + -11.6  -3.57561   TGCCGTTAACGGATT         CGGCGATGGC AATATGC GTCATCGCCG         TTTGCGCGCTTGCGC  74 90
HRR29_RS12275 2535905 .. 2535918 +  -3.8  -3.41229   TGTCTAAAAACTCAT               CACG ATTCAG CGTG                TTGTGATCGCCGTCT  49 98
        ansP 2537672 .. 2537691 + -13.6  -5.63517   CGTAAGCATCAAAAA            GGGAAGGC AAAT GCCTTCCC             TTTTTTATTTACAGC 100 46
HRR29_RS12290 2541155 .. 2541181 + -12.4  -3.62046   ATTAATGAAATAACG         CTCCTGATGG CAATAAA CCATCAGGAG         TTATTCACCAGATAA  88 62
HRR29_RS12310 NONE
HRR29_RS12315 2544936 .. 2544950 +  -5.6   -4.3534   GTCGGGGCCTGGCTG               GTGGCG CGA CGCCAG               TTTTGATCGTTACAG  69 5
HRR29_RS12335 NONE
HRR29_RS12340 2553686 .. 2553713 +  -9.8  -2.64155   AGTAGCCGCCTTTGT        TGCCGGGTG-GCG CTG CGCTTACCCGGCC        TACATTTCGCAACGA  68 36
HRR29_RS12390 NONE
        cydB NONE
HRR29_RS12400 NONE
        hslJ 2565782 .. 2565813 + -11.7  -3.53012   TACCGCAGCTTCCAA      CGGCAAGCGACTGT TCGCT ACAG-CGTTTGCCG      TTTGGCAAGGCGCAC  86 49
        nifJ 2569828 .. 2569846 + -11.7  -5.47218   AGCGACTAGTTCCCC             TGCCCGG CTTGT CCGGGCA             TTTTTTTCCATAAAA 100 32
        ompC 2571326 .. 2571349 + -16.8  -2.60977   CAGTTCTGATTGTCA          GAGCCCGCAT AATC ATGCGGGCTC           GCTTGTTTTTTGAAG  95 32
HRR29_RS12460 2577969 .. 2577980 +    -3  -3.31144   ACCCTTAAGCCTGCA                TGAT GTGA ATCA                 TTATAGGGCTCCAGA  47 164
        ttcA 2579037 .. 2579063 + -15.3  -3.59936   TGAAGTAAGCGATTA         GCGTCTCAGAA ACACC TTCTGAGACGC         TTCATTCTTCATTTC 100 33
HRR29_RS12485 NONE
HRR29_RS12490 NONE
         ecr 2587464 .. 2587481 +  -8.4  -5.63517   TCATTTGCTTATGTT             GCCCGT GCTCTG ACGGGC              TTTTTTATTTCCGGC 100 154
HRR29_RS12500 2588334 .. 2588346 +  -4.1  -4.38154   GGCGCGATAGGCGCT                TTCTC CAG GAGGA                TTTTCTCCGCCATGT  65 243
        mpaA 2591201 .. 2591226 +  -9.7  -3.36823   GAATGGCGACCATCC         GCTCGCTGATC AGGC GATCGTCGAGC          TTCACTTTTAGCACC  67 504
         tpx 2592327 .. 2592342 +  -8.2  -5.58179   ACAACTTATTCTCAA              CCTCGC CGCG GCGGGG               TTTTTTATTATAATA 100 60
HRR29_RS12525 2593791 .. 2593806 +    -9  -5.31855   ACCATAAAGTAAAAA              GCCTCT TTAC AGAGGC               TTTTTGTTATTCGTC 100 40
HRR29_RS12545 2599514 .. 2599526 +  -6.9  -5.03715   GTTTCAACGCGGCTG                TCGGC ATA GCCGG                TTTTTTGCAGATCGT  90 460
        pspF 2614687 .. 2614705 +  -4.5  -3.05715   CAAAAAGCATCAAAT             GCGCTGA CAATA TCAGCAC             TTACCTGCAGACATT  47 19
        sapA NONE
        sapB NONE
        sapC NONE
        sapD NONE
        sapF 2620098 .. 2620129 + -10.4   -4.3623   GCCCCACTAAATTAA      GGATTAAATAGC CTGCGTGC GCTATTTAATCC       TTTAATTTTTCGTCT  90 62
HRR29_RS12655 2621211 .. 2621234 +  -6.7  -4.07568   GGTATAGGTAACATC          GCCACCATG AGCCAG CATGATGGC           TTTTACCACCGACAA  66 72
HRR29_RS12670 2623617 .. 2623641 +  -5.5  -3.63744   ATGTCCGCTAAACAG          GCGCGCGGTAG ACT CTCCCTCACGC          TATTTTGCACAAAAA  58 74
HRR29_RS12675 2624592 .. 2624611 +  -3.6   -3.0287   TGAAATTCACGTAAC            CGGACGTTA ATT TAATG-CCG            CATTTTTTTATTGAA  45 16
HRR29_RS12680 2627706 .. 2627717 +  -7.2   -2.5194   AAGCGTGAATACCCT                CGCG GGAT CGCG                 CTTCCTCGCTGGTTG  55 33
        fabI 2628765 .. 2628788 + -15.4  -4.07568   TTAAATAAGCTGTGA          CTCTCTTCCC GCAC GGGAAGAGAG           TTTTCCCCCCGCACC 100 33
HRR29_RS12690 NONE
HRR29_RS12695 2631933 .. 2631966 + -12.6  -5.69262   TGATAACCGGTTCAA     TTGTCGGCCGTTTCC TTTCC GGAAG-GGCCGACAA     TTTTTCTTTTTATCC 100 38
        pdeR 2634379 .. 2634423 +  -6.4  -4.07687   ACTGCGAGGCAATTG CAGAACGCGCGTACGGGCG CGCAGCAT CGCCCTTACGC-CATTCAG TTTTGGCCGCAGCGT  66 169
HRR29_RS12710 NONE
HRR29_RS12715 2636296 .. 2636309 +  -9.5  -4.15029   CCGCGCCCGAATTTC               GGGCG CATA CGCCC                TTCTTTCTCTGAGAT  83 48
        osmB 2636829 .. 2636854 + -14.7  -4.64861   CGCACGTATATAACA         CGAGCCACGGC ATTT GCCGTGGCTCA          TTTATTTTAACCGCC 100 99
        ribA 2641308 .. 2641327 +   -15  -3.18788   GAATGATGCTAAAAA            GCCCGGCA CGGG TGCCGGGC             TCGTTTTATCAGTCC 100 35
HRR29_RS12780 2649480 .. 2649499 +   -15  -5.27335   TCGATTAATGCAAAA            CGCGAGGC ATAT GCCTCGCG             TTTTTGTTTACAGCA 100 33
HRR29_RS12790 NONE
        cobO 2652162 .. 2652181 + -11.4  -4.66938   TTACTAAAGAAAAAA            GCCCGGTT CGTT GACCGGGC             TTTTATATTAACCGT  95 34
        trpL 2654888 .. 2654905 + -12.7  -5.75342   TGCAAACAGATACCC             GCCCGCT ACCC AGCGGGC              TTTTTTTTGAACAAA 100 45
HRR29_RS12820 NONE
        trpD NONE
       trpCF NONE
        trpB NONE
        trpA 2661627 .. 2661642 +  -5.4  -2.86785   TTTTTATCTTTAATC              CTTCTG AGTT CAGAGG               CTTATTCATGTCATG  50 183
        yedE NONE
        yedF 2663100 .. 2663115 +  -8.2  -4.06786   GAAGTGATCGCTAAG              GGCCTC GTAA GGGGCC               TTTATCCTATTGAAT  76 34
HRR29_RS12855 2663572 .. 2663590 + -14.6  -3.53444   AGTGAGCAAAGCAAA             CTGGCCAC CCT GTGGCCAG             TTTGACGGGGGATCA  95 41
HRR29_RS12870 2664928 .. 2664949 +  -2.3  -2.98823   CGGCTAATTAACACC           TGCAATACTC AAG GAG-AGTGCA           TGTCTATCACGGCGA  42 30
HRR29_RS12875 NONE
HRR29_RS12880 2666298 .. 2666328 + -16.3  -3.32966   CACTGATTAACGACT       GACCAGAACGTCT ACGAC AGGCGTTCTGGTC       TATTCTCTCCGCTGT 100 35
        yciA 2666806 .. 2666821 + -10.4   -5.8187   GACAGGCAAAAAAAA              GCCTCC ATCA GGAGGC               TTTTTTTATTCCATC 100 43
HRR29_RS12895 2668076 .. 2668091 + -10.4  -5.31275   TTCTGAAACCAAAGC              GGCTCC GAAA GGAGCC               TTTTTTATGGTGGAA 100 35
         cls NONE
HRR29_RS12920 2672059 .. 2672088 + -16.7  -3.75437   CTCTGGCGCGAATAA       TAAAAAAGGCTGC GATT GCAGCCTTTTTTA        TTTACTCCGGTAATT 100 26
        adhE 2683154 .. 2683170 + -10.8  -5.77988   AAGCAGAAGAAAAAA              CCCGCC TTTAT GGCGGG              TTTTTTTATGTCTGT 100 45
         hns 2684799 .. 2684815 + -10.1  -5.78622   CCGTATTCAGAAAAA              TCCCGCG TAA TGCGGGA              TTTTTTTTAACCTAA 100 46
HRR29_RS12990 NONE
        purU NONE
HRR29_RS13000 NONE
HRR29_RS13005 2690193 .. 2690217 +  -7.1  -3.90328   CTTTGTCGCTCTCGA          TACACTCCGGC ATC GCCTGAATGTA          TTTATCAACCTTATG  66 298
HRR29_RS13015 2691873 .. 2691885 +  -9.1  -2.59447   GCCGCAGGCACCGCC                GGCGA TCA TCGCC                ATCTTCTGCTTCACC  57 421
        narX NONE
        narL 2702730 .. 2702765 +    -9  -4.06384   CAGCGGCTGCACGAC    GGTCAGCACGATCTCAT TGG ACGAGA-CGCGCTGGCC    TTTCTCATCTTCCAC  75 95
HRR29_RS13090 NONE
HRR29_RS13095 2717305 .. 2717342 +  -6.9  -2.74784   CCGCATTTAATCTTC   TTCCGGCGCGCGTTT AGCGGGTA AAACGCGCGCCAGCC    TAAATTTTGAGGAAT  55 31
HRR29_RS13100 2717758 .. 2717775 + -14.1  -3.21276   CAGCATAAGTTTAAA             CGCCCGG CAAG CCGGGCG              TATTGTCAGGCAAAA  86 33
        chaA 2720322 .. 2720335 +  -9.5  -5.87996   AGGGAGAACAAAAAA               CCCGC CGAA GCGGG                TTTTTTTATTAGTTG 100 92
        lolB NONE
        ispE 2727321 .. 2727337 +  -6.5  -3.03159   GCGCAGACTGAGTTT              CGGTGAC AAC GTCACCC              TGTTCCAGACGTTGC  55 20
         prs 2728418 .. 2728431 +  -9.5  -5.71712   AACACGGCCGAAAAA               CCCGC TGCG GCGGG                TTTTTTTGTCTCCGG 100 44
        dauA 2730435 .. 2730449 +  -3.5  -3.53012   ATCGGTATTTTCCCG               CTGCG CCTGA TGCAG               TTTCGCCACCAGCGG  49 257
         pth 2732507 .. 2732517 +  -2.4  -5.00884   AAGCGCAATAATCCA                 CCCG ATC CGGC                 TTTTTTACCGCGCGT  70 30
        ychF 2733743 .. 2733760 + -11.3  -5.76949   TTTTGAATGAAAAAA             TCCACGC TTTG GCGTGGA              TTTTTTTTGCGCGTG 100 45
HRR29_RS13340 NONE
HRR29_RS13345 2775132 .. 2775142 +  -2.4  -3.61178   ATGGCCGCAATATCC                 CCCG CCC CGCG                 TTTCACATCAATCAG  47 278
HRR29_RS13360 NONE
         gap 2778810 .. 2778842 +  -9.8  -2.75183   TGTAAGTCTTACCGT     GATGCCGGGTG-GCG CATG CGCTCACCCGGCAAA      TAATTCACTCCGCCT  68 36
HRR29_RS13375 2781170 .. 2781183 +  -8.1  -3.72576   TCAGGTGATTGACAA               CAGCG GTCA CGCTG                TTTAGTGAAGACAGG  72 89
HRR29_RS13380 2782935 .. 2782971 +  -9.3  -2.74605   CTTACCCGGACTGCG    CGTGCTGGCCCTCTCCC TCC GGGAGAAGGTTAGCCAG    TAAGTTTTGAGCAGA  64 66
HRR29_RS13395 2786858 .. 2786884 +  -2.8  -4.57837   TGTACTTTCCAGATA         TAACGAGGCGCC TGT GGTGCCGGGTGA         TTTTTCGCCACATGT  69 100
        ldcA 2788448 .. 2788461 +  -2.3  -2.58579   TCATCCTGTCATAAA               GGCAT AAAA AAGCC                GTTATACCCCCTTAA  39 19
HRR29_RS13410 2790292 .. 2790303 +  -3.6  -2.79492   GCGGAGTAGTTTTTT                TGCC GGGT GGCG                 GTTTCGCCTTACCCG  44 32
HRR29_RS13425 2794658 .. 2794673 +    -9  -5.79595   CGGGCGAAAAAAAAA              CCTCTC GTAT GAGAGG               TTTTTTCTTTTAGCG 100 73
        nhaB 2797153 .. 2797170 + -12.7  -3.92659   GTAAACTATGCATCT             CGGGCAG TTCG CTGCCCG              TTTGCCTTTTCGCAC  95 37
        dsbB 2797914 .. 2797927 +  -9.5  -5.27779   ACAAGCACAAAAAAA               CCCGC CTCG GCGGG                TTTTTTAATCTTAAC 100 124
        minC 2800269 .. 2800281 +  -4.9  -3.29973   ACGACGCGTTGACCG                TTCAA CCG TTGAA                TTGATCCCTTTTTAA  54 9
        minD NONE
        minE 2801440 .. 2801464 + -12.2  -5.93809   GCGCCACCGGGGAAA          TATGCCGGGT ATATC GCCCGGCATA          TTTTTTTTATCGCGG 100 71
HRR29_RS13500 2808449 .. 2808460 +  -2.2  -3.22388   TCCGCTGCTCATCCC                CTGG GACA TCAG                 TTCCTGAATTCGCTC  44 146
        pabB NONE
HRR29_RS13515 2810538 .. 2810548 +  -2.4  -3.01712   TCGCAGGTTTGCGAT                 CCGC GTC GCGC                 TATTAGCAAAACCCA  42 65
        sdaA 2812056 .. 2812082 + -17.4  -3.82865   CGACTAATACTGCCT         TTCGCCCATCTG CAA CGGATGGGCGAA         TTTCCCTCTTCTTTC 100 34
HRR29_RS13525 2813936 .. 2813953 +  -3.3  -3.78124   CGCGATCACCAGGCC             GGCAACG GTCG CGATGTC              TTCTTCATCGTTGAT  52 185
        manX NONE
        manY NONE
HRR29_RS13545 2818499 .. 2818516 + -14.1  -5.71712   TTTCAATGCTATAGG             CCGGGGG CTTG CCCCCGG              TTTTTTTATCTGGAG 100 42
HRR29_RS13550 2819004 .. 2819019 +  -6.2  -3.82789   TCAATGACTTGGATA              TATAGC AATG GCTATA               TTCTGTGTTTATCTT  64 34
        mntP 2819970 .. 2820003 +  -8.2  -3.22208   CGGTTAATCTTCGCG     CTGCCAGACGTGGAT ACTGA AATC-CGTCTGGCAG     TTAAATATTGATTGT  65 34
HRR29_RS13595 2825620 .. 2825638 + -11.7  -5.60993   GACTTGCAAAAAAAA             CGCCGCA ACAGA TGCGGCG             TTTTTTTATACGAGC 100 55
HRR29_RS13605 2828009 .. 2828035 + -15.9  -3.70751   TCAGGCATAAAAAAA        GCCGGGC-GGAG TGTT CTCCTGCCCGGC         TTATTAGGGTTCTTA 100 31
        yebS NONE
HRR29_RS13635 2836503 .. 2836528 + -16.9  -4.20368   CGCGTTAATCTGAAA         GGCTCCGGTGT CAAC GCACCGGAGCC          TTTATGTTACACTGC 100 33
        rsmF 2838081 .. 2838095 +  -4.2  -4.07568   AAAATGGGTGATCGC               ACTGGT CAT ACCAGA               TTTTGACAACCGACC  61 91
HRR29_RS13645 2838373 .. 2838388 + -11.8  -4.24413   CTGACCTAAAGAGAA              CCCGCC CGAA GGCGGG               TTATTTATTACTGCA  95 37
HRR29_RS13655 2840179 .. 2840191 +  -4.8  -3.53444   TCGCTCACTGCATAG                CGGA TGCAT TCCG                TTTAAAAAAGAATGA  56 56
HRR29_RS13660 2841609 .. 2841635 + -11.7   -5.4505   ATTAAAAGTGAAAAA        CCGCAG-TGCTT TCGC AAGCATCTGCGG         TTTTTTATTGGAAAC 100 416
HRR29_RS13680 2843625 .. 2843639 +  -2.8  -2.93853   TAAAGTTAAATAAGC               TTAACG AGT CGTTAC               ATTTCCTTACGCGGA  42 28
HRR29_RS13685 NONE
        exoX 2845081 .. 2845108 + -11.3  -3.01924   CTTAACGCTCCGCAC        GGCCTGGCAGCG TGTCC TGC-GCCAGGCC        TATTAAAAAAGCATA  75 36
        purT 2849215 .. 2849230 + -11.8   -4.8048   TGCAGGATAAAAAAA              CGGGCC AGAA GGCCCG               TTTTTCATATGGCGA 100 31
HRR29_RS13725 2854730 .. 2854769 +  -3.4   -3.1855   AACGATTTACGGCAT  TCGGTCCCCTCTCCGCTGC CTT GCAGCAGAT-GAAGGCCGA  TTCAATGTTCACGCA  47 78
         pyk 2856279 .. 2856300 + -15.9  -5.95539   TGTCTGTGTTAAAAA           GCCCTCTCC AGAT GGAGAGGGC            TTTTTTTATTTCCGC 100 44
        znuC NONE
        znuB 2861353 .. 2861383 +  -6.2  -2.70932   AGAGGGAACACAACA       TTACGGCATTGC CGGTGGC GTAATGCCGAAA       TGATTCCACGCCCGC  53 85
HRR29_RS13790 NONE
HRR29_RS13795 NONE
HRR29_RS13800 NONE
        cmoA NONE
        cmoB 2870838 .. 2870865 +  -6.8   -3.9461   AAAAACCGTTCCAGA        TTGCTGGCGCGG ACTC CCGCACCCGCCA         TTATTATTGGAACAC  68 411
        argS 2874007 .. 2874022 + -11.8  -5.55769   ATGTAATACAAAAAA              CCCGGC AAGC GCCGGG               TTTTTTCTTATCAGA 100 35
HRR29_RS13855 2881778 .. 2881807 + -16.7  -3.75629   TAAGGAGTCATGATC       TGATAATAGTCCG GACT CGGACTATTATCA        TTTCCCTTCAACCTC 100 91
HRR29_RS13860 NONE
HRR29_RS13865 NONE
HRR29_RS13870 2886507 .. 2886556 +  -6.4  -3.15861   GCTTGATCACCTGAC CGGTCAGGTCCTGGAAATCCTG CGCCAT CATGATGTCCAGCAGCTGAGCG TTGGTGAAGCTGGTG  52 283
HRR29_RS13930 2899684 .. 2899701 + -11.3  -4.36595   AGCAAACACAAAAAA             CGGCAAC CTGG GTTGCCG              TTTTGCATTTACCTA  91 100
        uspC 2906830 .. 2906844 + -11.4   -3.1505   GGCGTCCAGCCCAGC               TGGCCG TAG CGGCCA               TTAATGCGGCCTGCT  77 486
HRR29_RS13995 2913730 .. 2913750 +  -2.5  -4.57304   CTGGCTCCCAATGAT            TAACCACAC AAC GTGTGATGA            TTTATTTAGTTACAT  63 124
HRR29_RS14000 2915510 .. 2915523 +  -3.7  -5.52384   GCAGGTACAAAAAAA               CCCGC CGAA GCAGG                TTTTTTTAATCAGAA  85 405
HRR29_RS14015 2916196 .. 2916215 + -13.6  -3.34468   TGGTATTAATCAACG            CTGCCAGC GCTT GCTGGCAG             TATATTTCATTACGA  90 32
        ftnA 2916894 .. 2916926 + -24.3  -3.64703   TACGCAGAATTAATT      TTAGCGCGGTGCCGG TTT CCGGCACCGCGTTAA      TTTACATACACCCGG 100 28
        tyrP 2918720 .. 2918737 +  -8.4   -5.5112   GGTTAAATAAAAAAA             GGGGCT ATCATC AGCCCC              TTTTTTATTAGTGCA 100 35
HRR29_RS14040 NONE
HRR29_RS14045 NONE
        livM NONE
HRR29_RS14055 NONE
HRR29_RS14060 2924869 .. 2924882 +  -8.1   -3.5393   TCAGGCACAAAAAAA               CCACC TTTC GGTGG                TTTCACGACACTGCT  69 51
HRR29_RS14100 2930150 .. 2930174 + -16.5  -3.83409   GCCAGTAACAAAAAA          CGGCTGGATGC AGT GCATTCAGCCG          TTTGCTCGTCTGTCA 100 33
        fliS NONE
        fliT NONE
        amyA 2942364 .. 2942380 + -12.3  -4.35926   CGCTAACACCAAAAA              CGGCAAC GAG GTTGCCG              TTTTGCGTTTACCCT  95 97
        fliF NONE
        fliG NONE
        fliH 2951831 .. 2951845 +  -3.4  -2.78384   AACTGTGCCGCCTGG               CGGCAC CGG GAGTCG               TCTGATGACCGCGCG  44 6
        fliI NONE
        fliJ NONE
        fliK 2954919 .. 2954932 +  -2.3  -2.83449   ACATCTTCGCCTAAA               CGCCA GAGG TAGCG                TGATTATCCCCGTCT  40 27
        fliL NONE
        fliM NONE
        fliN NONE
        fliO 2957272 .. 2957295 +  -2.2  -2.51259   GAAGAGTTTGCTTAA          GCGTTCCGGG AGAT CCTGATGCGC           CGTTTGTTATCCCTG  39 7
        fliP NONE
        fliQ NONE
        fliR 2959322 .. 2959334 +  -3.4  -2.80545   GTTTATTATTTTTTT                CCAT CCCGT ATGG                CTGTTTTGAGCTCTC  44 248
        rcsA 2960047 .. 2960065 + -13.2  -4.93365   TGCACCCTACCTTGA             TCTCTGGC CTG GCCAGAGA             TTTTTGCTTCTGGAA 100 55
        yodD 2960856 .. 2960870 +  -2.7  -3.53343   TTATGAGCAATAACA               CACGC CGAAT GCGGG               TTTGCCAGGAGCATT  49 218
HRR29_RS14295 2962173 .. 2962199 +  -5.1  -4.09685   CGAGAACGGAAGCGA         CTGCTGGCG ACAGGTTTC CGCCAGCAA         TTTTGCGCGGTCGAA  62 433
        yedA 2966194 .. 2966212 +  -4.4  -3.98256   TCGATGGCGGTGTCA             CGGGTGCC GAT GGCACGCA             TATTTTTGCTGCGCG  62 430
        ompC 2969880 .. 2969895 + -11.8  -4.84527   CCCCAAAATACCAAA              GGCCGC AATT GCGGCC               TTTTTACTATCTGAA 100 43
        dcuS NONE
        dcuR 2973307 .. 2973336 + -13.7  -5.13722   CAGCAGGGTAAAGCG       GAAGTGGTGTGCT GAAG AGAACACCACTTC        TTTTGTTTTGGTCAC 100 57
HRR29_RS14365 2979214 .. 2979236 +   -12  -5.35224   TGTTCTGATTCCTGA           CCGCCGGA CTTCTCC TCCGGCGG           TTTTATTTTTGTGGA 100 33
HRR29_RS14370 2981101 .. 2981111 +  -8.2  -2.82005   GCAAAACGTGCATCA                 GCCG ATG CGGC                 ATTTGCGCTTATCTA  62 215
HRR29_RS14375 NONE
HRR29_RS14380 2983470 .. 2983493 +  -2.2  -3.53444   CCGCCTCTACCATAC          CGAGCATCGT GGTA ACGTGGCGCG           TTTCGCAGACGCTGG  47 203
        mtfA 2986957 .. 2986982 + -11.1  -2.78816   TAAGGCTTTTCAGCA         GGGGTCCGCTC GGTT GAGCGTATCCC          TATGCTCAACGCTAA  74 38
HRR29_RS14410 NONE
HRR29_RS14415 NONE
        iucC NONE
HRR29_RS14425 NONE
HRR29_RS14430 2996263 .. 2996284 + -12.9   -4.4084   ACTGTTCTGATCCTG           CGCGCCGCC TGCG GGCGGCGCA            TTTTGCTGTGTAATT 100 31
HRR29_RS14435 2996526 .. 2996536 +    -4  -3.23853   ATGCATCCTTGCGAA                 TCAT TAT ATGA                 TGTTGGTTCAACAGG  49 54
HRR29_RS14440 2997956 .. 2997991 + -17.9  -5.09685   TAATCAGGATTACGA    TAACAACAGCATCTG ACAACG CAGATGCTGTTGTTA     TTTTTCTGTATCTTC 100 54
HRR29_RS14485 3007808 .. 3007823 +  -4.7  -4.25104   CTATCCTGATCAAAT              CGAAC CGTACC GTTCG               TTTTAGTCAGGAGAC  67 226
HRR29_RS14490 3009321 .. 3009335 + -11.4  -3.57263   ATTTAGTTTATTAAA               CCCCGT AAT ACGGGG               TTTACCACTACCACT  82 74
HRR29_RS14495 NONE
HRR29_RS14500 NONE
HRR29_RS14505 3010526 .. 3010556 +  -6.8   -4.3665   AATAATAGCGATAAA       GACGTTCGGGGATA TTA TTTCTCTGCACGTC       TTTCTGTTTCCATTA  74 39
HRR29_RS14510 3011112 .. 3011124 +  -3.3  -2.73903   GAGTGACATTTCACA                GGATG CCG CAGCC                GTTTAACCCGCTTTT  43 7
HRR29_RS14515 NONE
HRR29_RS14520 NONE
HRR29_RS14525 NONE
HRR29_RS14530 NONE
HRR29_RS14535 3015938 .. 3015953 +    -9  -6.01187   TTTCCTCCAACAAAA              CAGGGA ATTC TCCCTG               TTTTTTTATTTCCTT 100 49
HRR29_RS14540 3017064 .. 3017083 +  -7.8  -2.51133   CCCCGTCACGCCGTG            GCCTGCGCC ACC GGTGC-GGC            ATTCCTGCATCCATA  58 65
HRR29_RS14545 NONE
HRR29_RS14550 NONE
       virB9 NONE
HRR29_RS14560 NONE
      virB11 NONE
HRR29_RS14570 3021662 .. 3021675 +  -9.5  -3.04398   CTCACCTGCAAACAG               CCGCG CCCA CGCGG                ATTTTGCAGGCCGGG  70 197
HRR29_RS14590 3026160 .. 3026194 + -11.3  -4.21438   GCCAACATGGTGGCC     TCACCGGCCTGGCGG CGATA CCGCCAGGCCAGAAA     TTATTTATTCCACTG  91 53
HRR29_RS14600 NONE
HRR29_RS14605 3030686 .. 3030699 +  -6.7  -2.68487   GATCTGCGTCTCTAC               TAGGG ATAG CCCTA                TGATGTGCTCATTAA  53 75
HRR29_RS14610 NONE
HRR29_RS14615 NONE
HRR29_RS14620 NONE
HRR29_RS14625 3035840 .. 3035857 +  -5.5   -5.1417   AGCCAAATTTGAACA             GCCTGAT TACT AGCAGGC              TTTTTGCTTTTGTGC  82 165
HRR29_RS14645 3040915 .. 3040933 + -13.2   -5.1417   AGCCAAATTTGAAAA             GCCTGCTT TTG AAGCAGGC             TTTTTGCTTTTCTGC 100 302
HRR29_RS14665 3043313 .. 3043338 + -10.5  -4.08064   TCTATTCGCTCATCA         CCGCC-GAGTGA CGG TCATTCCGGCGG         TTTTGAAGCAGGCTT  87 46
HRR29_RS14685 3046263 .. 3046298 +  -8.2  -2.73007   CGTCTATGCGCGAGC    GTCCGGTGATCCCCTG GCGG TAGGTGATCAGCGGCC     ATTTCGCAACGTCTT  54 410
HRR29_RS14700 3048293 .. 3048311 + -13.2   -5.1417   AGCCAAATTTGAAAA             GCCTGCTT TTA AAGCAGGC             TTTTTGCTTTTCTGC 100 36
HRR29_RS14720 NONE
HRR29_RS14725 NONE
HRR29_RS14730 3058390 .. 3058404 +  -2.7  -4.04897   GGGAAACGCCCAGCC               CGCCG CCCCA CGGCA               TTTCATTGTAATTGT  56 351
        shiA 3060192 .. 3060213 +  -2.9  -2.70452   GCGCTGCTGATGAAA           GAGACAAGC CACG GCTGATCTC            CCTTTTGTTTCACAG  41 8
HRR29_RS14745 NONE
HRR29_RS14750 3063592 .. 3063608 + -12.3  -4.37198   TGCAAACACTAAAAA              CGGCAAC CCG GTTGCCG              TTTTGCGTTTACCTT  95 92
HRR29_RS14765 3065551 .. 3065569 + -13.2  -4.98531   AGCCAAATTTAAAAA             GCCTGCTT TTA AAGCAGGC             TTTTTGCTTTGCGGA 100 36
HRR29_RS14770 3065935 .. 3065956 + -14.5  -4.74706   TGAATCATAAAAAAA           GGCTCTCTG TCAC CAGAGAGCC            TTTTTCACTATTCGC 100 31
        sbcB 3071035 .. 3071055 + -14.7  -5.75945   AGGGGTATAAAAAAA            GCCGGAGGC GAT GTCTCCGGC            TTTTTTTTGCCCGCT 100 44
        hisL 3074852 .. 3074878 + -22.4  -5.75342   TGAACGCATGAAAAA         GCCCCCGGAAGA TCT TCTTCCGGGGGC         TTTTTTTTGGACCGA 100 66
        hisG NONE
        hisD NONE
        hisC NONE
        hisB NONE
        hisH NONE
        hisA NONE
        hisF NONE
HRR29_RS14860 3081959 .. 3081975 + -13.7  -5.58454   TCACAAATAAAAAAA              CCGGGGA ATA TCCCCGG              TTTTTTTAATCTGCA 100 31
HRR29_RS14870 3084168 .. 3084179 +    -3  -3.58726   CGTTTCTACAAAATT                TGAA TGCA TTCA                 TTATGTCTACGCCAA  49 23
HRR29_RS14875 3084788 .. 3084826 + -13.4  -2.66969   TGCTCTAAGACTAGA   GATTAAAAGGACAGCT AATAACA AGCTGTCCTTTTAAGC   TAAATTGTATTAGTC  81 53
HRR29_RS15060 3125983 .. 3125999 + -12.3    -4.946   TTAGGTAAAACAAAA              CGGCAAC CCG GTTGCCG              TTTTTAGTGTTTGCT 100 37
HRR29_RS15080 3133005 .. 3133021 +  -2.2  -3.53012   CCACGGCTGCCAGCG              TTCGGC ATAAC GACGAA              TTTGCGCGGGCGGCA  47 89
        yegD 3135446 .. 3135463 + -11.3  -4.36595   AGAAAACACCAAAAA             CGGCAAC GGAT GTTGCCG              TTTTGCGTTTACCTC  91 85
HRR29_RS15095 NONE
HRR29_RS15100 NONE
        mdtC NONE
HRR29_RS15110 NONE
        baeS NONE
        baeR 3146702 .. 3146732 +  -3.5  -3.54183   CTTGCTGAGAAGGAT      GTTTATGC-ATTTT CTTC AAAATAGCATTAAC       CTTTTTATCATCAAA  49 203
HRR29_RS15130 3149495 .. 3149526 +  -9.5  -5.20154   CCAGGAACCACCTCC      TTAGCCTGCGTAA TCTCCC TTACGCGGGCTTA       TTTTTTGCCTTCTCT 100 158
        yegS 3151198 .. 3151208 +  -3.2  -4.15788   ATCAGCTTCACGCCG                 TCGG CCA TCGA                 TTTCTTAAACGCCTT  60 158
HRR29_RS15150 NONE
HRR29_RS15155 NONE
HRR29_RS15160 3155700 .. 3155748 + -16.8  -5.17353   ATGCTGTACTCAATC GGCCGGTGCTGTTGGTCAAGCG CGACC TGCTTGATCACCAGCACCGGTA TTTTTTCGTCCATCT 100 60
HRR29_RS15185 3159767 .. 3159786 +  -4.2  -3.40775   TCAGCGACCCTGTAT            CTGATGCT CATT GGCGTCGG             TATTTGGATCGGCAT  51 148
HRR29_RS15190 3160299 .. 3160315 + -12.3  -4.18018   AAATAAAGCGAACAA              GGAGGCA GTC TGCCTCC              TTTTCGGTCAGCGAA  95 35
HRR29_RS15195 NONE
HRR29_RS15200 3163469 .. 3163497 +  -9.5  -4.84359   TGGCTAAGTAATACA        ACACCCCTCTTCC GCC GGGAGAGGGGTTA        TTTTTATACGCCTGC 100 30
HRR29_RS15225 NONE
HRR29_RS15230 3169391 .. 3169414 +  -5.2  -4.82901   CATCTGCCCCAGCAG          CTGGGTGTGA TACT TCGCGGCCAG           TTTTTCTGCACCACC  79 307
        metG 3172493 .. 3172511 + -14.6  -5.75342   TGAAATAACAAAAAA             GCCGGAGA TAA TCTCCGGC             TTTTTTTTGCCCGGC 100 33
        mlrA NONE
HRR29_RS15265 3177097 .. 3177117 +  -3.9  -2.70932   CCAATCGCCGCTATC            GTTTCCACC AGC GGACGAAAC            TCCTTGCCCGCAGGC  43 472
         dld 3184822 .. 3184843 + -12.3  -4.03234   GAGTAACCGTCTGAC           GCCGGAGGA ACGT TTCTCCGGC            TTTCTATAACGAGGA  95 90
HRR29_RS15300 3185433 .. 3185450 +  -9.9  -4.98616   GGAATAAACGCAAAA             CGGTAAC CTGG GTTACCG              TTTTTAGTGTTTTCG 100 34
HRR29_RS15315 3187951 .. 3187975 + -12.1  -4.89009   TCCTCCCCTCACCCC          GGCCCTCTCCC AAA GGGAGAGGGTG          TTTTTAGTTCCCTCT 100 49
HRR29_RS15360 3199257 .. 3199283 +   -16  -2.81966   CCCTGTGCGGTGATA         CCAGACGTTCCA TTC TGGAATGTCTGG         TATGCTCAAATTTCA  93 107
HRR29_RS15365 NONE
HRR29_RS15370 3200452 .. 3200481 +  -3.7  -4.58773   CTGGCGGTGATGGGC       TAAAATTTGCGATG CGT CG-CGCAAATTTCA       TTTTGATTTCATAAG  67 23
         cdd 3201474 .. 3201497 + -13.8  -3.72576   GCTTGCGTAATCCTT          CCGGCGGGCA GAAA TGCCCGCCAG           TTTGCTGAAAAACCC 100 31
        sanA 3202396 .. 3202406 +  -8.2  -3.34344   TAAGCTGAGTTCACT                 GCCG CTA CGGC                 TTCATTGAAGACTGA  67 110
HRR29_RS15385 3203862 .. 3203889 +  -6.2  -2.75712   GAGCGGGCCGGATAA        CGCGAGGAGGAA TTAC TTCTTACGCGCG         TACTTCAGTGAATCC  53 63
        fghA 3213106 .. 3213123 + -11.3  -4.67641   AACAAATACTAAAAA             CGGCAAC TTAC GTTGCCG              TTTTGCTTTTACCCT  95 97
HRR29_RS15445 3219016 .. 3219058 + -12.8  -5.26918   AACCATCTCGTCCTT CTCCTGCTAACCCGCTAT CATAAGC GTTTCGGGTTAGCAGGAG TTTTTTATGAAATAT 100 40
         nfo 3219928 .. 3219951 + -13.2  -5.43621   GGCGGCATAAAAAAA          GCCGGG-TGCA TAA TGCAACCCGGC          TTTTTTGTGGTTTAT 100 31
HRR29_RS15485 NONE
HRR29_RS15490 3226502 .. 3226520 + -11.7  -4.11216   AGTGACAGCCGTATT             GTGGCCC TCATC GGGCCAC             TTTTCGCCATCAGCC  95 40
        yeiP 3229645 .. 3229660 +  -8.2  -5.24129   ACAAAAACACAAAAA              CCGGCT CTCA GGCCGG               TTTTTTATAGGCCCG 100 82
HRR29_RS15520 3232554 .. 3232569 +  -6.2  -2.80612   AGGCTGTTATCGAAA              CGTTAA ATAT TTAACG               ATTATTGCGCTTAAC  54 12
HRR29_RS15525 3233666 .. 3233689 +    -3  -4.26188   GAGGATTCGTTTAAG          TTCGGGCGGC TAAC GTTGCCCCAG           TTTTCACTCTATGCA  60 13
HRR29_RS15530 3234444 .. 3234476 + -15.7  -3.29263   ACCTAAATTAACGTG      AGCTATCAGGGATCG ACA TGATCCCTGATAGCA      TTCTCGCCGCGATCT 100 44
        mepS 3235464 .. 3235479 +    -9  -6.07627   TATGATGAAAAAAAG              CACTGC TTCG GCAGTG               TTTTTTTTTGCCCGT 100 79
HRR29_RS15540 3237077 .. 3237090 +  -4.5  -3.54489   TGGCGGCCTGATATT               TCGCC CGAG GGTGA                TTAATTTCACATTGC  53 8
HRR29_RS15545 NONE
HRR29_RS15550 3240091 .. 3240103 +  -4.7  -3.53811   ATTGATTTTGAGGGC                CGCTG ATG CCGCG                TTTAAGCCCCGTCAA  56 20
HRR29_RS15555 NONE
        yejF 3243131 .. 3243144 +  -2.3  -5.29782   CATCATCGCCAGCCT               GCACT ATTC AGCGC                TTTTTTATCGATATC  76 444
HRR29_RS15580 3247378 .. 3247403 + -11.1  -3.10597   GAGGCAGAACACTCA         CCTGCTGCTGG GTCG CCTGTAGCAGG          GTTTTAAATACAGAG  75 102
        rplY 3247733 .. 3247748 + -11.8  -5.65177   ACACGTCGAAAAAAA              CCCCGC TTCT GCGGGG               TTTTTTTATGGCTGT 100 47
HRR29_RS15595 NONE
HRR29_RS15600 3250899 .. 3250938 +  -4.4  -3.20991   CGGATGAGAAGCGCT  TC-ATCGCTAACTGATTAA TAA TAAACCAGTTAGCGACAGA  TTCCCTTGCATTCAA  49 12
HRR29_RS15605 3251077 .. 3251092 + -10.4  -5.95539   AAAACATATTGAAAA              CCAGCC TGAT GGCTGG               TTTTTTTATTTCGCC 100 41
         eco 3253502 .. 3253519 +  -9.9  -4.76874   AGAAAACACTAAAAA             CGGTAAC GGAT GTTACCG              TTTTGCTTTTATCTT 100 130
HRR29_RS15630 3257109 .. 3257121 +  -4.7  -4.09739   AGGTTAATGGCCAGC                CACGC CCA GCGCG                TTTTCACCGCCTTGC  62 475
        rcsD NONE
        rcsB 3268146 .. 3268159 +  -9.5   -5.5208   GTGAAAAAACGAAAA               GGCCC TTAC GGGCC                TTTTTTATATTCTGG 100 98
        ubiG 3274682 .. 3274704 + -12.8   -3.3334   TTATTCTTATAAAGA           TTGCGCGACA TCA TGTTGCGCAA           TTCTGACCTCCCGTT  85 50
        nrdA 3277296 .. 3277313 + -14.1  -4.49556   TAAGATCTAATGAAG             GGCGGGG ATAT CCCCGCC              TTTATTTCGTAAGAC 100 31
        nrdB NONE
HRR29_RS15700 3278773 .. 3278790 +    -7  -3.32844   GTTAGGGTGAGGGTA             TCAGGC CGCAGA GCCTGA              TTGTCGGGTGGCGGC  61 74
        glpA NONE
        glpB NONE
        glpC 3285528 .. 3285558 + -13.8  -4.25104   AAGGCGCTGGGCTGA       ACACGGCCGGGGCG AAA CGCCCCGGCCAAGG       TTTTACTCCACGAAC 100 26
         rbn 3296400 .. 3296413 +  -3.8  -3.87378   GCTGGCCGAAGATTT               CGCT CAGGTT AGCG                TTTAGTCCTTCATTT  56 7
HRR29_RS15785 3297568 .. 3297581 +  -9.5  -5.28481   CAAACCATAAAAAAA               CCCGC CGAG GCGGG                TTTTTTCGTTACGTG 100 106
        alaA 3316357 .. 3316378 + -13.1  -3.82208   TCAGTAATCTTAAAA           TCAGGCTAC TTCG GTAGCCTGA            TTTGCATCTTTCCTC  95 34
        yfbR 3317369 .. 3317380 +  -7.2  -3.04144   TCGGCGCCATCAGTA                CCGC CGTC GCGG                 TATTGGAGATAAACA  54 352
        ackA 3322289 .. 3322316 + -16.4  -4.36914   CTGACTGCCTGATTC        CA-CACCGCCAGC AAT GCTGGCGGTGCTG        TTTTGTAACCCGCCC 100 29
         pta 3324548 .. 3324569 +  -8.7  -5.63517   ACCGGGCAACAAAAA           GGCGACC ACTTAACG GGTCGCC            TTTTTTATTTACAGC 100 70
HRR29_RS15925 3330017 .. 3330034 +  -2.5   -4.4261   ACGCAGCTAAACAGC             CCGCCCC AGAC GCGGCAG              TTTTCGTCTTCGAAA  64 228
        yfcG 3332460 .. 3332482 +  -4.9  -2.71268   GATTTAACCCTCTAT          GAGGCT-G-GG TGC CCGCGAGCCTC          TCATGTATGATGAGC  47 34
        folX 3332884 .. 3332903 +  -4.9  -2.70215   ACGCTAAGCTGGCGA            CGCCAGG CGTAAT CCTGGAG             GTTGTATGAAGATTT  47 14
HRR29_RS15955 NONE
HRR29_RS15960 3334551 .. 3334585 +  -6.2  -3.25113   GCAGGCGCGGGCTTT     GCGGGTTCGCCAGCAC CTC GTCCGGGTGGCCCTGC     TCTTCAATTTTCCCC  54 220
         flk NONE
        mnmC 3355006 .. 3355030 + -12.1  -3.89501   GTAAGGCCTCGATCA          GGCGTGCCGGA CGT TCCGGGATGCC          TTTCTCAAGATATTC  83 489
        smrB NONE
        fadL 3366283 .. 3366299 + -12.3  -5.68438   GCTGGAATCAAAAAA              GGTGAGC ATT GCTCACC              TTTTTTATTTACTCC 100 45
HRR29_RS16125 NONE
HRR29_RS16130 3368537 .. 3368556 +  -3.6  -2.96638   ACTCGTCTAATAAGG            TGCCATTA TTTC TAATGGAA             TCTATACATCTTTGC  45 107
HRR29_RS16135 3369866 .. 3369876 +    -4  -3.39618   TCTATAGCACTATCA                 GAAT AAA ATTC                 CTTTTTGCCCTTAAA  49 94
        lpxP 3410708 .. 3410732 + -11.6  -4.19258   TTAGCCCTTCATGAA          GGTTAGTTTC GCTAA GAAACTAACC          TTTTCAATCACCTGT  95 37
        ypdK 3411149 .. 3411167 + -14.6  -5.74122   ATGCAGTCAAAAAAA             CAGGAGCC ATC GGCTCCTG             TTTTTTTATGTCATG 100 46
HRR29_RS16330 NONE
HRR29_RS16335 3415316 .. 3415337 +  -7.2   -3.4072   CTGACGCAGATGGGC           CCCGGAAC CCAGCA GTCCCGGG            TTATCATGCACGATC  58 97
HRR29_RS16345 3417701 .. 3417713 +  -9.1  -3.78775   ATCAGGCGCTATTGC                GCGCT TCC AGCGC                TTTAGTAATCGCCCC  76 40
        mgrA 3420534 .. 3420547 +  -3.9  -2.64616   CTCAAAATAAAACCA               CTTTT AGCA AAAAG                TGCTCTCACTCAGGA  43 31
HRR29_RS16360 3421018 .. 3421033 + -10.4  -5.45802   CCATTAATGCAAAAA              GGAGCC TCCC GGCTCC               TTTTTCTTTTAGAGC 100 34
HRR29_RS16370 3423837 .. 3423855 +   -16  -5.60993   AGCGTTAAACAAAAA             CCGGGAGC CTG GCTCCCGG             TTTTTTTATGCCCGC 100 46
HRR29_RS16390 NONE
HRR29_RS16395 3427439 .. 3427456 + -12.7  -5.36441   AGAGGCATAAAAAAA             CGGCAGG TTAA CCTGCCG              TTTTTTATCTGAGGC 100 40
HRR29_RS16405 3429265 .. 3429281 +  -2.2  -3.15249   AGATAAGAATTGAGA              TTGGGC GATTA GCTCAG              TTGGTAGAGCATCTC  43 65
HRR29_RS16410 NONE
HRR29_RS16415 NONE
HRR29_RS16420 3429537 .. 3429553 + -10.8  -4.84527   CCACCAATGTAGAAA              GGCGCC CTAAA GGCGCC              TTTTTGCTATCTGCA 100 35
HRR29_RS16425 3430190 .. 3430205 +  -3.9  -3.21912   ACCAGCATCAGCTTT              CGCTC AACAAC GGGCG               TTAATCGCTTGACGG  47 161
HRR29_RS16435 3432079 .. 3432111 + -10.6   -4.2828   AGGCTTAAGGACGTT     TC-AGGGGCTGAACC AGCT GGGTCAGCCCCTCGG      TTTTGATCAGTAACG  90 33
        cysZ 3436365 .. 3436384 + -12.8  -3.69663   AAAATGTGTAAAGCA            GGGGTGGC TTAT GCCGCCCC             TTATTCCATACTGAT  93 45
        cysK 3437509 .. 3437524 +    -9  -5.26316   ATAACGCGTAAAAAA              GCACCT TTTC AGGTGC               TTTTTTGTGGCCTGC 100 54
        ptsH NONE
        ptsI NONE
         crr 3440391 .. 3440420 + -13.7  -3.87815   AATTCTTGCCGCACA       GAAAAATGGCGCC TTCG GGCGCCATTTTTG        TTTATGCCGGTAGGA 100 39
        amiA NONE
        hemF 3451107 .. 3451119 +  -3.3  -4.07568   TCGCGCACCAGCTCC                AGCGT CTG ACGCA                TTTTGCAGGCCGCCG  58 386
         tal NONE
         tkt 3456633 .. 3456655 +  -7.6  -3.99405   TTATAGGCCCCCGCC           TCGCAGCTGA CGA TCAGCAGCGC           TTTGTCATCGGTTAA  71 349
        narQ 3461975 .. 3461990 +  -4.8  -3.22499   CAGGGAAAAGCGCAT              GATAAT TTAC ATTATC               TCCTTTATTTCTCCA  52 58
        acrD 3465217 .. 3465235 +  -9.5  -5.25699   ATTGAAATAAAAAAA             GGCGGCT TTATC GGCCGCC             TTTTTATTGTGTGAT 100 44
HRR29_RS16585 NONE
        dapE NONE
HRR29_RS16595 3467801 .. 3467812 +  -3.6  -3.36327   GGTGGATCGTGGTCT                GCGT GGTC GCGC                 TTGTCGGTAACGTCG  49 361
HRR29_RS16630 NONE
         bcp 3475199 .. 3475216 + -11.3  -4.98616   TGATAAACAGCAAAA             CGGCAAC CCAG GTTGCCG              TTTTTAATGTTTTCC 100 38
        bepA NONE
        arsC 3478414 .. 3478444 +  -7.6   -2.6927   ATCCTCTAGTCCTTA      TGCCGCAGCGCTT CCAGAA AGGC-CTGCGGCG       TACTCTCTCCCAGCT  58 32
        celB NONE
HRR29_RS16665 NONE
HRR29_RS16670 3483397 .. 3483430 +  -5.1  -4.08767   CCCAGATTGAGCTGT     CTCGGCGGACGATCG CCGG TGATCAGCAGCCGGG      TTTTGCCCGACTCCA  62 347
        purM NONE
        purN 3489519 .. 3489553 +  -9.3  -2.57013   CGAAGAGTAGTTTGT    TACGTCGGGTG-GCGC TGCT GCGCTTACCCGACCTG     TACATTGCATTACCC  64 31
        ppk1 NONE
         ppx 3493331 .. 3493349 + -12.4  -2.90194   CCGCGTAACGGCTCA             GGCGTCCG CGG TGGACGCC             TCTGCTTCCAGCAGT  79 33
HRR29_RS16720 3496292 .. 3496306 +  -3.4  -3.74872   ACTGTAGCCCAGCCC               CGCGCG AAC CATGCG               TTTGATCGCCTCGAT  52 208
HRR29_RS16730 NONE
HRR29_RS16735 NONE
HRR29_RS16740 3499843 .. 3499856 +  -3.8  -2.94924   TGCCGTCCGATGCTC               CCTG TAACGT CAGG                ATTTCTGCCTCAACC  44 272
HRR29_RS16750 3501362 .. 3501376 +  -5.6  -3.14564   TAGCCACCTCTGTCC               GCGGGA TAA TCCCGA               TTAATCCACGCGTGG  54 7
HRR29_RS16805 3515607 .. 3515626 +  -9.2  -4.46404   TAAGGCAATAAAAAA            CCCCCTGC ACAG GCAGAGGG             TTTTGGTGTTAATTC  86 38
HRR29_RS16820 3519227 .. 3519257 +   -15  -4.36914   TCATATTATTAAAAA       GAACACCAATAGAT AAA ATTTATTGGTGTTC       TTTTATCAAGACAGG 100 78
        xseA NONE
HRR29_RS16840 NONE
HRR29_RS16845 3525592 .. 3525637 +  -6.2  -3.33261   CGACATATTCTCTCC TGTTGGGTTTTACCGGGACAG GATAA CTGCCCCGGT-AGGCTGAACA TTATCAGGCTTCAGC  59 253
HRR29_RS16910 NONE
HRR29_RS16915 3547139 .. 3547172 +  -5.3  -5.00616   GAGTTGAACGTGGTT     TGCTTGTCGGTGT CAGAAAAA ACACCGACAATCC      TTTTTTACGGAAAAG  78 53
        sseA NONE
HRR29_RS16925 3549201 .. 3549231 +    -6  -3.29013   CAGCAGCGTTTCGCC       CCCTTCCAGCACTT CCT GGGTGCTGAGCGGG       TTGCCTTCTTCACCT  54 406
        suhB 3559134 .. 3559147 +  -3.7  -4.56597   ATTTCGGTTTTTGCA               GCAGC ACGC GCAGC                TTTTTCAGCGCCCGC  70 518
        csiE NONE
HRR29_RS17010 3563436 .. 3563465 + -13.7  -3.85698   CCGGCGTTAAGCCAT       AAAAAAAGGCCGC AAGC GCGGCCTTTTTTA        TTTCTGCCAGGCAGA 100 31
        hmpA 3566241 .. 3566258 + -12.7  -5.75342   TGCTGTAATGAAAAA             GCCCCTC GTTC GAGGGGC              TTTTTTTTCGCCGGG 100 33
        mltF 3576498 .. 3576510 +  -6.2  -5.14563   ACGTCCATCAGCGAA                CCGG CCGCA CCGG                TTTTTTCATCCCGCG  89 76
HRR29_RS17075 NONE
HRR29_RS17080 3581377 .. 3581406 +  -9.2  -3.05935   CAGCACGCGTCTTGC       GAGGCGATCGCC GCTACG GGCGATCACCGC        TTCAATGCGGGCTAT  64 322
        nadB 3592754 .. 3592770 +  -9.4  -3.96148   GAGATCAGTTCTGCC              GCGCTG GTGAG CAGCGC              TTTATGATCGAGGGA  78 284
        srmB 3594684 .. 3594701 + -10.5   -5.4505   TGAAGAGTAAAAAAA             GCCGGGG AAAT TCCCGGC              TTTTTTATTCCCCCC 100 31
         ung 3596334 .. 3596346 +  -6.9  -3.53091   CCAGCACCATTTTGC                GCGGC AGC GTCGC                TTTAAACAGCGGCGT  60 244
        trxC NONE
HRR29_RS17180 NONE
         pat NONE
        pssA 3602860 .. 3602876 +  -9.4  -5.60993   TCTGTAATGTCCAGG              CCCTGC CACCC GCAGGG              TTTTTTTATGGAGCC 100 34
HRR29_RS17195 3603407 .. 3603423 +  -4.3  -2.82936   CTACCCCTAAAGCAC              GTACCTG CGC CGGGAAC              ATTTCAGCTTTCAGT  43 213
        bamD 3615433 .. 3615452 +   -15   -5.9003   TGCCTCAATGCAAAA            CGGCAGCC CGAA GGCTGCCG             TTTTTTTATTCATTT 100 44
        raiA 3616050 .. 3616065 + -11.8  -6.07374   TGAGTGTACTGCCAA              CGCGCC TTCG GGCGCG               TTTTTTGTTTTTTAT 100 51
HRR29_RS17250 3616232 .. 3616252 + -11.8   -5.5112   GAAGACGAACAACAA            GGCCTCCC ACACC GGGGGGCC            TTTTTTATTGATAAC 100 49
        pheA 3617805 .. 3617826 +  -7.3  -3.65425   GCCCTTCTCATCAAG           CGGCGTA CGGTAAAT TACGCCG            TTTGGCGTGTCTGAG  63 379
HRR29_RS17275 3621320 .. 3621331 +    -3  -3.29107   GAGCGATGTGGCGGA                TTCT GGTG AGAA                 ATTTATTCTTGATCT  45 173
HRR29_RS17280 NONE
        dgcN NONE
HRR29_RS17290 3624040 .. 3624052 +  -6.2  -5.00616   TTCCGTCACGGTCCA                GGCG CTATC CGCC                TTTTTTGCCGGGCGG  86 493
HRR29_RS17330 3629960 .. 3629979 +    -2  -2.87132   GGCTAAGTAACAAAA            GGAGTTCC CCCT GGAACACA             TCTCTACCACCACGC  40 35
HRR29_RS17335 3631667 .. 3631689 +  -5.6  -4.35524   GCGCCTTCTCAACGT          CCTGC-TCG GTACGA CGACGCAGG           TTTTCCATTTCCGCC  69 436
        nadK 3632899 .. 3632937 +  -3.2  -4.04318   GTCAAAAAAATTGTT   CTGATTTTGCATCCAGTA CTT TACTGTATAAAAAACCAG   TTTATACTGTATGAA  56 22
        recN NONE
        bamE 3635137 .. 3635178 + -13.3   -4.4009   AATAATCAGAAGTCA GAAATGC-AAAAAGGTGCTC ATT GAGCACCTTTTTTGTTTTTC TTTTATCCCCTCGCC 100 36
        smpB NONE
        ssrA 3637162 .. 3637183 + -12.3  -5.24799   TGCACTTTAAAAGAA           CCCCAGATC TCAC GGTCTGGGG            TTTTTCTATTTGTAA 100 151
HRR29_RS17380 3637580 .. 3637615 + -10.4  -5.11063   TGGGCTGTAAAATGT    GCTGGCTGCCAGCATT AATA AACGCTGACAGCCAGA     TTTTTCTTCCATGAT 100 31
HRR29_RS17385 3638776 .. 3638796 +  -5.4  -5.24416   AACCAACGAGAAAAA           TA-GGGGCG CTTG CGCCCCATG            TTTTTATTCTGGTTG  82 42
HRR29_RS17585 3666754 .. 3666772 +  -8.1  -5.27335   GCGAAATTTCACAAA             GCCGTTC CTCTA GAGCGGC             TTTTTCTTTCACCAG 100 59
HRR29_RS17620 3672436 .. 3672451 + -10.4   -5.4433   ACCCCACCTTTTGAA              GCCGCT TTTA AGCGGC               TTTTTCTTTGTCTGT 100 49
HRR29_RS17625 NONE
HRR29_RS17630 3673552 .. 3673570 +  -9.6  -2.92495   GCCTTTATGCGGCTT             GCGGTTAC GAG GTAATCGC             TCGTCTTTATCTCAA  69 77
HRR29_RS17635 NONE
HRR29_RS17640 NONE
HRR29_RS17645 3674835 .. 3674846 +    -3  -4.12902   GCAGGGGTGAAATGA                TGAA GCCC TTCA                 TTTTCAGCATCATTG  56 26
HRR29_RS17650 3675336 .. 3675349 +  -6.7  -2.57013   TATTAAAAGTCGATG               GCGTT AAAG AACGC                TGGATTGACTTAACG  52 139
HRR29_RS17655 3676573 .. 3676588 + -11.8  -3.25918   AAGTAGAAGAAAAAA              CCCGGC TAAT GCCGGG               TCTGTTTGGGGGTTA  79 44
HRR29_RS17670 NONE
HRR29_RS17675 NONE
HRR29_RS17680 3682474 .. 3682489 + -11.8  -6.09888   ATTTGATTGATACCT              GCCGCC ACCA GGCGGC               TTTTTTTTCTTCACC 100 85
HRR29_RS17695 NONE
HRR29_RS17700 3685267 .. 3685290 +  -3.7  -4.66609   GATGAAACCTGAAAG          CCCACACGG TATAAC CCCTGCGGG           TTTTTCAGTACCATC  67 156
HRR29_RS17705 3686003 .. 3686018 + -11.8  -5.55769   GTAATCCCTTTGAAA              GGCCGC GCAA GCGGCC               TTTTTTATTCTCCGC 100 37
HRR29_RS17710 3686996 .. 3687012 +  -5.8  -3.16191   CCCCCTGCAGGACAA              GCTGCG ACATG TGCAGC              TTGATGCCGATGTCC  49 298
HRR29_RS17730 NONE
HRR29_RS17735 NONE
HRR29_RS17740 NONE
HRR29_RS17745 3704430 .. 3704454 + -10.7  -2.62522   CGCAGACAAAAAAAC          GCACTTGCGCA CAG TGCGGGAGTGC          ATTACTATTCAATCA  71 211
HRR29_RS17750 NONE
HRR29_RS17755 NONE
        nudI 3705627 .. 3705643 +  -2.2  -4.11692   AGGGCCTTCTTTAAT              CGCC CACTGCCCC GGCG              TTTTACCGGTCCATG  59 27
HRR29_RS17770 3706863 .. 3706875 +  -5.5  -3.28712   TTACTCCGCCGGGCG                CGGTG CGG CACTG                TTATACACCCCAACG  54 43
HRR29_RS17790 3710271 .. 3710281 +  -8.2  -3.01712   TCAGCACCAGCATCG                 GGCG CTC CGCC                 TCTTCGGCCAGCGCG  56 57
HRR29_RS17830 3720152 .. 3720162 +  -2.4  -3.71687   CGTCTGTACCAGTTC                 CGGG CCC CGCG                 TTTACCCTCTTTTAC  50 265
HRR29_RS17840 NONE
HRR29_RS17845 NONE
HRR29_RS17850 3721341 .. 3721370 +   -15  -2.54896   GCGTCTGCTGAACAG       TCAGCCGGGCGG CGTGTT CCGCCCGGCTCA        TCCGTTAGATCAGAA  90 30
        alaE 3722729 .. 3722754 +  -8.9  -2.90573   CAAAAGCGTGATGTG         AAGCGACTGGC GCAC GCCAGTCGCGG          ATTTACTGTACGTCG  65 30
HRR29_RS17870 3723601 .. 3723628 + -15.6   -4.8543   TAATCCCGCGTATTC        TGCCCCGGTAGCC TCA GGC-GCCGGGGCA        TTTTTATGCCCGTTA 100 38
        nrdH 3724052 .. 3724079 +    -4  -4.77165   TAACCGCCTGAGCGC        TCAGGCCACCCG GGTA TGAGTGGGCTGG         TTTTCTTCTCCAGCA  73 7
        nrdI NONE
        nrdE NONE
        nrdF 3727653 .. 3727681 + -16.2  -2.74144   AATTTCCACGTCATA        TTCGCCTGAATC ATTTC GATTCAGGCGAA        ATTTCCCGATGCAGC  90 115
        proV NONE
        proW NONE
        proX NONE
HRR29_RS17910 3732567 .. 3732592 +  -8.3  -3.19889   ACATTTACATTGAGT         TGGCCTCTTAG GGTG TTAAGAGGCCC          TTCACTCTGTTAATG  65 40
        mprA 3733441 .. 3733464 + -13.9  -3.85817   ATAAGAAAACCGACA          GGCCAGCAC GTCACA GTGCTGGCC           TTTCTGACAACAGGT 100 70
        emrA NONE
        emrB 3736273 .. 3736284 +  -2.2  -3.17075   AGTCCTGTGACAGTT                GC-CC GGT GGCGC                TTCGCTTACCGGGCC  43 39
        leuA 3738321 .. 3738354 +  -2.9  -4.12942   CATGTTCATCATGCT     CGCGGCCTGCGCGCTG CTC CAGCTCTCCC-CCGCG     TTTTGCCGGATTTGC  60 249
        srlA NONE
HRR29_RS18035 NONE
        srlB NONE
        srlD NONE
        gutM NONE
HRR29_RS18055 NONE
        gutQ 3757970 .. 3758000 +  -5.9  -3.84406   GGCGACGTCCATCTC       CAGCGCCCGGGCG CACGC CGCCCAGCTGCGG       TTATTCTGCTCCAGC  61 79
        norV NONE
        norW 3762273 .. 3762290 +  -9.8  -5.85178   ATTTTATTATTCACC             GCCCCG ATATTC CGGGGC              TTTTTTTTACGTATT 100 109
        ascF NONE
HRR29_RS18105 3770707 .. 3770739 +  -7.5  -3.79021   GTCCTTACCCCTCAC      CCTAACCCTCTCCCC ATA GGGGAGAGGGAACCG      TTTGGTGCGGTTTTC  69 44
        hypA NONE
        hypB NONE
HRR29_RS18165 NONE
        hypD NONE
        hypE NONE
        flhA 3784576 .. 3784598 + -11.3  -4.65916   TTAAGACCTTATTCC           GGCGGTGTT TTTCT GACACCGCC           TTTTGTTCCCCTGCG  95 37
HRR29_RS18185 NONE
HRR29_RS18190 NONE
HRR29_RS18195 NONE
HRR29_RS18200 3788899 .. 3788940 +  -4.4  -4.25104   ATCTCTTCACGTCTG GCAGGCTGGTAA-CAGTGT ACGGG GCACTGCTTGCAGGCCGGC TTTTCCTCACCGAAA  64 173
HRR29_RS18210 3789521 .. 3789531 +  -3.2  -2.93701   AAGCCACGACATTTT                 TCTG CGC CGGA                 CCTTTTTTTCATGCG  42 40
        mutS 3792242 .. 3792267 +  -5.3  -5.40072   CCTACAAAACCGTAG         GCCCGGTAAGCG CAG CGCC-ACCGGAC         TTTTTTTACAGCAGC  84 86
HRR29_RS18235 3795307 .. 3795340 +  -5.3  -5.71712   GTGCAAAGGCCATAA    GAGCCTGCGCGCTGT CGGCAA ACAG-GCGC-GGCGC     TTTTTTTATCTCCAG 100 228
HRR29_RS18245 3797281 .. 3797302 +  -4.3  -2.71712   GGTGCTCACCCAGCT           GCGACAGGA GAAT TCATGACGC            CTTTCGAACACGACA  45 7
HRR29_RS18250 3797687 .. 3797706 +   -15  -5.00616   AGCGCAAAAGAAAAA            GGCCCGTC TCAC GACGGGCC             TTTTTTGACGAAAGG 100 39
HRR29_RS18320 3810155 .. 3810196 +  -3.8  -3.33737   GAGAGGGAGGATAAG CCTTTGTAGGCCCGGTAAGCG CAG CGCC-ACCGGGCA-A-AAAGG TTATCACCCTTCGTG  49 85
        queD 3815142 .. 3815158 + -10.8  -5.75945   CGGGGAGTAAAAAAA              GCCCGG CTAAA CCGGGC              TTTTTTTTAGGCAAT 100 31
HRR29_RS18360 3819155 .. 3819181 +  -8.7  -4.31766   TGCTCTGAAAATCAT         TCGCAGGCTAA ATAAA TCGGCCTGCGA         TTTATGTTGTCTGAT  79 33
HRR29_RS18365 3820626 .. 3820645 + -12.2   -4.4261   AATAGCCAAAAAAAA            TGCCAGTC ATTC GACTGGCA             TTTTCATGTTAAGGC 100 36
        barA 3831175 .. 3831202 +  -9.8  -2.90723   GGAAGCTGAGATAAA        AGCCCGGTG-GCG CTA CGCTTACCGGGCC        TATGATTGCGGGTGC  69 32
        queF 3840510 .. 3840527 +  -9.8  -3.80625   ATATTTTCACAATAT             GCGCGG TATCTT CCGCGC              TTTAGGTTGTGAAAC  79 46
HRR29_RS18445 3841993 .. 3842020 +   -14   -5.7946   CAGCATCTCATCAAA        GCCGGGTCGCCC TGTT GCGCGTCCCGGC         TTTTTTTATTACGAG 100 48
HRR29_RS18450 NONE
HRR29_RS18455 3845223 .. 3845245 + -14.2  -3.53779   GATTAAGCCCCTCAG           GAAGCCTCGT TTT GCGAGGCTTC           TTCCTGTTTTCCCCA  93 35
         xni 3846375 .. 3846394 +  -6.4  -3.30771   GCCAGGAGGCCATCA            GCGCGGCGA CTT TTGCCG-GC            TTCTCAACCATATCG  54 319
        csdA NONE
        csdE 3851496 .. 3851509 +  -5.2  -3.86015   CATCAATCACCGTGA               CCCG ACATTC CGGG                TTTATCAGGCGAATA  61 519
HRR29_RS18505 NONE
HRR29_RS18510 NONE
HRR29_RS18515 3853520 .. 3853533 +  -8.1  -5.77988   TCTGAAAACAATAAA               CACCC TCAA GGGTG                TTTTTTTGTATCTGT 100 46
        argA 3856673 .. 3856684 +  -3.6  -3.78775   ATTTATGCACCGTCA                TCGC CCAG GCGG                 TTTCATGCTCGGGCA  54 298
        mutH 3876135 .. 3876155 +  -5.5  -4.17762   TGCCCGTCATTTCCT            GTTAAAAAC ATA GTTTTTTAC            TTATTTTGCGAGCTC  66 13
HRR29_RS18595 3876504 .. 3876522 +  -7.4  -5.31158   CGATAAACAGATAAA             GGTCAGTA GCT TGCTGGCC             TTTTTGATTTTTTTC  95 35
HRR29_RS18600 3877678 .. 3877695 + -11.3  -4.71482   GTAATAAAAGCAAAA             CGGCAAC GCAG GTTGCCG              TTTTTAGGGTTTGCT  95 37
        galR 3882886 .. 3882896 +  -3.2  -3.73775   CCCAGGAAATAACGT                 GCTG CTG TAGC                 TTTCCTGCCAGTCCC  52 165
HRR29_RS18625 3884688 .. 3884700 +  -6.9  -3.05463   ACGACCGTCTCAACG                CGCGG CGC CTGCG                TTAAATCACGGCCGT  54 263
HRR29_RS18635 3886856 .. 3886866 +  -6.8  -4.18494   CCCCTTCCGCCCCCT                 GCTG CGC CAGC                 TTTTCAATCACGCTG  71 151
HRR29_RS18675 3895265 .. 3895276 +  -4.4  -3.85704   ATGGTAAATTGCACG                CCAT TCCG ATGG                 TTTGATAGTTGATAC  58 109
HRR29_RS18680 3896536 .. 3896566 +  -9.6  -3.53012   TGTCGGCTAATCCCC       TTTCCTGCCCGGCG CGC TGCCGGGTAGGCCA       TTTACAGCGGAAAAG  75 31
HRR29_RS18690 3897753 .. 3897770 + -12.7  -3.90744   GGTAAGATAAAAAAA             CACCGGC CATC GCCGGTG              TTATTTACGCCCGAA  95 31
HRR29_RS18705 NONE
HRR29_RS18710 NONE
HRR29_RS18715 3902050 .. 3902070 + -15.4  -2.60079   TAAATAAGCGTCTGA            GCGCGGCG CAGGC CGCCGCGC            TCCCTTATCGACTGA  90 34
HRR29_RS18720 NONE
HRR29_RS18725 3905039 .. 3905050 +  -5.8  -3.94877   AGATGCCAGGATTGG                TGGC GCTA GCCA                 TTATTGTTAAGGCAT  63 110
         idi 3922722 .. 3922735 +  -9.5  -5.52909   CGGCGCAATAAAAAA               GCCCC TTTC GGGGC                TTTTTTTACATCTTA 100 30
        fldB 3929941 .. 3929954 +  -5.9  -2.77899   GTTGCAACTCGGTGT               CGGCG GGTT TGCCG                TGGTTCATCAGCCAG  47 494
        ygfZ 3931550 .. 3931567 +  -9.1  -3.30124   CCGCCCAGCACAAAG             CCGTGCC AGAT GGCATGG              TTGTACGGGATGCGC  63 164
HRR29_RS18815 3933426 .. 3933454 +  -7.6  -2.80994   CCTGTTTTTTTGATG        TAACAAATCACA TTTAC TGTGAATTGTTA        TATCGTGACATTCAA  59 46
        bglA 3935003 .. 3935026 + -18.2  -3.90112   CGGCCTACGATTGAT          CCCCTCTCCC CTTT GGGAGAGGGG           TTTACTTCCCGCCCG 100 73
        zapA NONE
        ssrS 3945774 .. 3945786 +  -3.4  -4.77165   TGCGGCGGCATCTCG                GAGA TTCCC TCTC                TTTTCTTCTACCGAC  71 18
HRR29_RS18875 3946471 .. 3946488 +  -9.9  -4.41177   TGAAAACATAAAAAA             CGGTAAC TATC GTTACCG              TTTTGCATTTATCTC  90 94
        argP 3949858 .. 3949870 +  -9.1  -3.22298   CTGAGCAGACACCGG                GGCTG CAT CAGCC                TTCATCATCCGTACC  63 194
HRR29_RS18930 3959169 .. 3959186 + -11.3  -5.28942   TAAATAATTTCAGAA             GGAGGCA ATTT TGCCTCC              TTTTTATTTCGCATG 100 34
HRR29_RS18935 3960652 .. 3960667 +    -9  -6.06723   GAAGGCAATAAAAAA              CCTCTC AATA GAGAGG               TTTTTTTTTCACGCA 100 39
HRR29_RS18955 3964302 .. 3964312 +  -8.2  -4.36914   TTATTTTATATGAGC                 CGCG CGC CGCG                 TTTTATACCGAGAAC  79 95
        metK 3966240 .. 3966252 +  -3.3  -4.95155   GAGATGTAAAGGACT                CGCAG GAT CTGCA                TTTTTATCCTGTCGG  74 510
HRR29_RS18965 3967518 .. 3967529 +    -3  -2.93991   TTTTTTCCTGGGCTA                TGAT TAGT ATCA                 TCTCCTTAAATTAAC  43 19
HRR29_RS18970 NONE
HRR29_RS18975 NONE
HRR29_RS18980 3970690 .. 3970702 +  -2.7  -5.00884   ATTCCTGAACTGGGA                GATAT GTA ATGTC                TTTTTTCAACAAGGT  72 17
HRR29_RS18985 3971224 .. 3971250 +    -3  -4.56802   TGTAAATCTCATGAC         GAGACTCTGAAT TTA ATTTAGAGAGTC         TTTTAATGTTTATTT  65 210
HRR29_RS18990 3972393 .. 3972423 +  -9.1  -3.53012   TTGAGCAGATTTACT      TCATTGCGGTAGCG GTTA CGCT-CGGCAATGA       TTTGGCCAAACAAGG  66 349
        galP 3978731 .. 3978769 +  -7.4  -3.00651   CGCCCACGACTGATC  CTC-ATGCG-GGAGGCGC CTCTT GCGCCTCCCCGCTTCGCG  CTTTATGCTCTGCCC  61 28
HRR29_RS19015 3979349 .. 3979389 +    -2   -4.9725   ACAACATTCGTTACG TTGCGGGCTCGTTTTGACAC GGA GTGT-AAGATGT-CCCGTAA TTTTTCTCTCGCGGT  70 90
        endA 3980112 .. 3980127 +  -2.6  -2.96722   GGCAATTCGCTTATA              TCGCATG ACA CATG-GA              ATTTCTGACTATGCG  43 51
        rsmE NONE
        gshB 3981853 .. 3981893 + -11.2  -4.56597   CTAACAATACTATTA GTGACAGCGCCTGTGTTTG TCCC CATAC-TGGGCGCTGTCGC  TTTTTAAACCAGGAA  95 42
HRR29_RS19035 NONE
        ruvX 3982994 .. 3983008 +  -3.5  -4.27316   CGGTCTGGATGATGC              CG-GGC AGTT GCCACG               TTTTCCCTTCACGAA  64 119
HRR29_RS19050 NONE
HRR29_RS19055 NONE
HRR29_RS19060 NONE
HRR29_RS19065 NONE
        hemW 3987218 .. 3987237 +  -6.5  -4.18494   TTCCTCGCCGAAGAA            TCCTGAA GGCTGA TTCAGGA             TTTTGCATCCCGCTC  69 20
HRR29_RS19075 3988127 .. 3988138 +  -2.2  -4.36914   TGATGATCTTATCCA                G-CGC GAC GCGGC                TTTTCTCAACGCGGG  62 503
        mutY NONE
HRR29_RS19100 NONE
        mltC 3992160 .. 3992195 + -18.4  -3.64103   ATCGTCGCCGGTGAT    CGGCACACCTTCTCCC CTCT GGGAGAAGGTGTTCTG     TTTCCCCTCTCCCTG 100 27
HRR29_RS19110 3993740 .. 3993767 +  -9.9  -3.93367   AAAACCAGACCGTAG       GCCGGGTAAGGCG AAGC CGCC--ACCCGGC        TATTTTATTGCAGAG  80 78
HRR29_RS19155 NONE
HRR29_RS19160 4003900 .. 4003931 +  -7.9  -3.17212   TCTCGCTGTAAACCC      CCTGCAGCTCCGGC GAGAA GCCCG-GCAGCAGG      TTGATGCCCTCCTCC  57 196
HRR29_RS19170 NONE
HRR29_RS19175 4007055 .. 4007071 + -10.8  -5.13016   CCACTATTTAAAGAA              CCCGCC CTCGT GGCGGG              TTTTTGCTTTTGGTT 100 38
        pgaA NONE
        pgaB NONE
        pgaC NONE
        pgaD 4014594 .. 4014610 +  -2.1  -4.83615   TTTTGTAGGCAACCC              TCAGCCC TGC GGGGAGA              TTTTTATAGCGAGTC  67 183
        yghU 4023155 .. 4023173 +  -4.4   -2.9183   ATTAGCTTAAAGGTT             GAGCCGGT ATT GCTGGCAC             TATCTGGACGTTTTT  46 94
HRR29_RS19240 4023582 .. 4023609 +  -3.3     -3.81   ACTGATAAATACAGC        CG-GGCAGCGCT CTGCA AGCCCGGCCTCG        TTGTTATGCAGTCAT  54 36
HRR29_RS19245 NONE
HRR29_RS19250 4024907 .. 4024929 + -13.5  -2.57985   AAGACGTTAATAATA           TAAGGCCGC ACAAG GCGGCCTTA           TAGGTTGCGTTATGC  81 496
HRR29_RS19280 NONE
HRR29_RS19285 4029175 .. 4029190 +    -6  -4.11304   ACAGGCATAAAAAAA              GCCGGC TTTC GCCAGC               TTCTTTATCACTTCG  66 45
        metC 4031847 .. 4031860 +  -6.7  -3.17075   TTGTGGACACCGCAA               GCAGA AAAG TCTGC                TTGAGTTGCGCCCGG  57 74
HRR29_RS19305 4033081 .. 4033091 +  -2.4  -3.65902   GCCCAGAATACGCGC                 GTCC AGC GGCC                 TTTCCATCACGTCCA  51 505
        yqhD 4034889 .. 4034905 +  -2.1  -2.61831   GAGCCGTCGCATCTA              CGAAGCG GCA CGCTAAG              CGTTTTTGCCCTCCC  39 10
        dkgA 4035897 .. 4035912 + -11.8  -5.64421   GTGTCGACATAAAAA              CCCCGG CTCG CCGGGG               TTTTTTATTTACGCT 100 85
HRR29_RS19340 4042067 .. 4042085 +  -7.4  -3.36878   TCCGCATCCATCGAG             TAGTGGCT TCA AGCCACGA             TTGTCACTGCCTCCG  64 85
        frmR NONE
        frmA 4044769 .. 4044785 +  -3.7  -4.26903   CGGACAGTGATTCAT              TACTGAT CCC ATCAGAA              TTTTAATCAACTCAA  62 20
HRR29_RS19360 NONE
        fghA 4046100 .. 4046118 +  -7.4  -3.51708   TACCATGCCAACAGG             CTCAGGCT GTC AGCATGAG             TTGATTTCCAGCCTC  66 8
HRR29_RS19385 4049513 .. 4049531 +  -6.7  -3.33261   ATGAATGGCGTTGGA            TGCCGGGC AACC GCCC-GCA             TTATGGGCGTTGGCC  59 398
        fecI 4050897 .. 4050909 +  -4.1   -3.3482   TTTCGTCTGGAGCAT                GGGTT ATG AATCC                TTCGTTAACCGATTC  51 17
        fecR NONE
        fecA 4054276 .. 4054291 + -11.8  -4.19258   TTCTGATGTGTTAAC              GCCCGG CTTG CCGGGC               TTTTAGCTGGAATGT  95 35
        fecB NONE
        fecC NONE
        fecD NONE
        fecE NONE
        tnpB 4058626 .. 4058649 + -12.5  -4.11692   GACGGGTCGGGTTGC          CGATACGGG CCGGGC CCCGTATCG           TTTTAACCCTGAATA  95 330
        lacI 4061703 .. 4061716 +  -6.7  -2.70932   CGCAACGCAATTAAT               GTGAG TCAG CTCAC                TCATTAGGCACCCCA  53 42
        lacZ 4064890 .. 4064910 + -14.7  -3.38046   AAAAATAATAATAAC            CGGGCAGGC CAT GTCTGCCCG            TATTTCGCGTAAGGA  93 33
        lacY 4066206 .. 4066217 +  -7.2  -3.29043   ATTAATGTCGGATAC                GGCG CGAG CGCC                 TTATCCGACCAACTT  59 44
HRR29_RS19515 4079411 .. 4079427 +  -9.3  -3.58162   GCTTCTGCATCAGCG              CGCGGGC GCA GCCCGGG              TTGGTTTCATGGTGC  72 364
HRR29_RS19525 4082219 .. 4082234 +  -6.1  -3.24232   AGCAGTTCAACCTGG              CCGTC CACCCA GACGG               TATCTTTCCAGCCGC  54 186
        qseB NONE
        qseC 4089389 .. 4089406 +  -4.1  -3.24516   GGATTATTGCGTATA             GCGCAAA AGAC TTTGCAC              ATTTTGCTCATTTTA  49 42
HRR29_RS19560 NONE
HRR29_RS19565 4090455 .. 4090481 + -14.5  -4.89063   GGAGAACAGATCCAG        GCCCGGTGAGCG TCAG CGCT-ACCGGGC         TTTGTTTTTAGGTGC 100 75
HRR29_RS19595 4097820 .. 4097836 +  -4.4  -4.15044   TCCTGCAGCCAGTTA             CG-TCGG TCTT CCGAACG              TTTCTTGGCAAGGAG  64 155
        tolC NONE
HRR29_RS19630 NONE
HRR29_RS19635 4105952 .. 4105970 + -14.6  -4.78029   TGCAAACACTGAAAA             CGGCAACC TGA GGTTGCCG             TTTTGCTTTTATTAC 100 88
        zupT 4107740 .. 4107769 + -15.1  -4.15854   CGCAGGAATCGGGTA       AAAAAACGCCGGG ATAT CCCGGCGTTTTTA        TTTTCAGCTGGCTTT 100 25
HRR29_RS19655 4109155 .. 4109170 + -11.8  -5.86965   AGAGGGAGAAAAAAA              CGGGCC AGCT GGCCCG               TTTTTTTTACTGACT 100 81
HRR29_RS19675 4115667 .. 4115682 +    -4  -3.48772   GCGTAAAGACCGCTG              GATGAA CTAA TTCGTC               TTCTCTGCCAGACTT  53 16
HRR29_RS19680 4117373 .. 4117383 +  -8.2  -4.74103   ATCGTCCAGACCTTC                 CGCC CGC GGCG                 TTTTTGGCTTCAGCA  87 420
        plsY 4119033 .. 4119046 +  -3.1  -2.63858   GCCTTATAGCCAAAT               GTGAT TTTG GTCAC                CTTCTGCCTGTGGTA  41 45
HRR29_RS19700 4120573 .. 4120601 + -12.4  -3.63991   CCGGTAACGACACAT        CACTTCGGTGGG TTCAC CCCGCCGAAGGG        TTCTTACAAATCGTC  88 94
HRR29_RS19710 4122209 .. 4122226 + -12.7  -4.85822   TCATTCATCTACAGA             GCACGGC CCAG GCCGTGC              TTTTGTATTTCTCCT 100 46
HRR29_RS19715 NONE
HRR29_RS19720 NONE
HRR29_RS19725 NONE
        ureC 4125469 .. 4125481 +  -5.5  -4.07678   CTGACGTTCTGCCGA                TGGCG CAA CGCTA                TTTCCTGTTTTGAGG  66 0
        ureE NONE
HRR29_RS19740 NONE
HRR29_RS19745 4127195 .. 4127205 +  -3.2  -2.71364   TTCCGTTCCTGAGGA                 GTCA ACA TGGC                 TGATTACAAACATCC  41 29
        ureG 4128171 .. 4128202 +  -6.5  -3.63991   CTTCGAACGCGCGGG      CGATATCGGCGCG GGTCTG CTCGCTGTTATCG       TTATTGCGAATCGTA  61 378
        rpsU 4129379 .. 4129405 + -10.9  -4.40882   AGTAATAGTCGTAAG        GCCGTGC-TTCC GGAA GGAATGCGCGGC         TTGTTTTCGTTTATG  95 76
        dnaG NONE
        rpoD 4133211 .. 4133226 + -10.4   -6.5058   CCTGACAGTGAAAAA              GCTCCC TTCG GGGAGC               TTTTTTTTTGTTTAT 100 46
HRR29_RS19780 4134029 .. 4134046 + -11.3  -5.61689   GAATCATATGATTAA             GCCACTC AATT GAGTGGC              TTTTTTATTGATTTT 100 54
HRR29_RS19830 NONE
HRR29_RS19835 4141761 .. 4141806 +  -6.3  -3.07443   GCTAAATGCAGAAAA TATCAGGTGCTACTGAT-GATT ATT GATCCATCAAAAGCACCCGATA TTGAATGACCTATAC  55 57
HRR29_RS19920 4152579 .. 4152591 +  -3.3  -3.59979   CATTCGCCACCAAAG                GTGGG GCG CTCGC                TTTCGGGTAGGACAC  51 55
HRR29_RS19925 4154006 .. 4154036 +  -8.3  -2.53164   CCGCCGCCTGATTAT      TTG-GCGTGCCAGT ATGC GCTGGCACGCACCA       GTTGCTGGTCAATCG  61 30
HRR29_RS19935 4155454 .. 4155468 +  -7.8  -3.34344   GCGTACCAGCTCCTT               CAGGTG CAT CGCCTG               TTCGTTAAGCGATGC  61 70
        ygjG 4160686 .. 4160718 + -10.6  -4.87665   TACAAAATACTGCAT     GCAGGCCCGGTAAGCG TAG CGCC-ACCGGGC-TGC     TTTTTATCGGTGAAA 100 73
HRR29_RS19960 NONE
HRR29_RS19965 4163296 .. 4163320 + -11.5  -3.40522   CTCATCCTGCCAGAA          CTGGAACGC ATCGCGG GCGTTCCAG          TTCTCGTGAACCACT  73 407
        lsrR NONE
        lsrK NONE
HRR29_RS20010 4173735 .. 4173751 + -12.3  -4.71482   AGGGTAAAAGCAAAA              CGGCAAC CCA GTTGCCG              TTTTTAGCGTTTGCT 100 58
HRR29_RS20020 NONE
HRR29_RS20025 4176810 .. 4176835 +  -9.7   -5.8096   TGCATAAAAAGCTAA         CGGCTATCGTC TTCT GACCATGGCCG          TTTTTGTTTTTTATG 100 220
HRR29_RS20030 4177915 .. 4177937 +  -3.5  -4.39696   AAAATATGATGCAAC           ACGTAAAAT CCAGC ATTTTACGC           TTTCTTCCTTTCGCG  65 106
        sstT 4179304 .. 4179323 + -13.6  -4.96106   AGGCTAACAGCAAAA            CGGCAACC CTGA GGTTGCCG             TTTTTAGTGTTTGTC 100 34
HRR29_RS20050 4184100 .. 4184115 + -11.8  -5.14563   ATGCGTTTCGCCGAA              GCCGCC TCCG GGCGGC               TTTTTTAATGGCAAA 100 46
        exuR 4185153 .. 4185165 +  -2.7  -3.29096   AATTGGATTCAATTC                CTTAT TTT GTAAG                TTAGTGCTTGCTAAC  45 207
HRR29_RS20060 4185974 .. 4185985 +  -2.2  -2.87931   AATACGGAGCCAGAG                GCTA ACGA TGGC                 TATCTCACCGCTCGC  40 21
        mzrA 4186372 .. 4186382 +    -4  -4.22346   TTGGATAACTTCCAG                 GATT CCG AATC                 TTTTCACTCACTTTG  64 33
HRR29_RS20070 4186853 .. 4186867 +  -3.4   -4.2528   AGGATGACCTGAAAG               CGCTGG AAG CTCGCG               TTTATTGAGTTAACG  62 3
HRR29_RS20075 NONE
HRR29_RS20080 NONE
HRR29_RS20085 4187917 .. 4187934 +  -9.9  -5.93252   GTGATAAAAGCAAAA             CGGTAAC CCTG GTTACCG              TTTTTTGTTTTTGCG 100 37
HRR29_RS20090 4188577 .. 4188596 + -13.6  -4.39166   CTGAATGAACACAAA            GCGAGGAG ACAT CTCCTCGC             TTTTGCTATCTGACG 100 51
HRR29_RS20095 4189617 .. 4189634 + -11.3  -5.26875   TTGGATAAATACGAA             GGGCATC ACCA GATGCCC              TTTTTTAATTCACAA 100 33
HRR29_RS20100 4190220 .. 4190236 +  -5.1  -3.03124   GCCACGCCATAATGA              TATCCAC CTC GTGGCTA              TATTCAGGGCTGACA  47 164
HRR29_RS20110 4192044 .. 4192057 +  -2.3  -4.13304   TTCAATTTTGCTAAA               GGCAG CAAG CTGGC                TTTTCACCGTGCTTT  59 233
        garD 4204338 .. 4204356 +    -3  -3.62775   CACGCCGTGAATCTC             CGCCGC CAGCGCA GCGGCC             TTCTTCAGCGGTAGT  49 242
HRR29_RS20170 NONE
HRR29_RS20175 NONE
        diaA NONE
        yraP 4208920 .. 4208937 + -11.3  -5.60993   ATCAAATAAAAAAAA             TCCCCTC GCTT GAGGGGA              TTTTTTTGTAGGCCC 100 32
HRR29_RS20200 4211453 .. 4211484 +  -9.3  -3.07895   AGCGGCAACGGGAAA      GCGGCGCGTGTAG AGCTTA CGGCGCGCGTCGC       TCTCTTCACCATCCA  64 128
HRR29_RS20210 NONE
HRR29_RS20225 NONE
HRR29_RS20230 4215223 .. 4215240 +  -2.7  -4.00756   AAAAAAGGCTCACTT             TGTTAAC AACG GTTATCA              TTATTTAATGCAGTA  54 39
HRR29_RS20235 4216620 .. 4216630 +  -2.4  -4.56597   CGGCGGCAGGAAGGT                 CAGC AGC GCGG                 TTTTTAAACGCCCCA  66 350
        argG 4231690 .. 4231706 + -15.1  -5.85244   ACATAACGTGCAAAA              GGCGCCC ACA GGGCGCC              TTTTTTATTTTGATT 100 47
        yhbY 4237957 .. 4237984 + -13.6  -4.89521   CATGCTCCTTGAGTT        GATAAAAGGCCGC TAT GCGGCCTTTT-TC        TTTTCTTTACAATGT 100 109
        dacB NONE
        pmrA NONE
        pmrB 4241923 .. 4241939 +  -5.1  -3.14051   GCTTGTAGATGAACT              CGACG CCTTCTT CGTCG              TCTTCATCCCAGTCA  52 80
        ispB 4246084 .. 4246094 +  -2.6  -2.53876   AATAAAGCCGTGTCT                 TATT CTG AATA                 TCCCTTCAAGTAACG  40 136
        sfsB 4246639 .. 4246651 +  -7.7  -3.41878   TCGATGTGATAGATA                CGATC CAC GATCG                TTGTGCCTTCCGCGA  61 174
HRR29_RS20425 NONE
        kdsD 4253529 .. 4253544 +  -6.8  -2.78816   CATATGCATGATCTG              CTGCGC GCAG GCGTAG               TGTAATGAAGGATAA  56 5
        kdsC NONE
        lptC NONE
        lptA NONE
        lptB NONE
        rpoN NONE
         hpf 4257776 .. 4257802 + -15.2  -3.92522   TTAACGGGTGCAGGA         CGGCCTGTTGTG AAA CACAACAGGCCA         TTTGTACAGTTAGCG 100 53
        ptsN NONE
        rapZ NONE
         npr 4259916 .. 4259927 +  -7.2  -4.28361   GACAAGGTTGATGCC                CCGC GCAC GCGG                 TTTTCATGGCGTTCG  74 450
        pepA 4267586 .. 4267625 +  -5.7  -2.75844   CAAAACGGCAGTAAA CCGTAGGCCGGGTAAGGCG AAGC CGCC--ACCCGGCTTAAGC  ATTTAAAGTGAGCAC  49 43
        holC NONE
HRR29_RS20515 4270960 .. 4270989 + -17.3  -2.78018   GCCCTGTAATGCTTT       TACCCCTTACGCT TCAG GGCGTAAGGGGTA        TCCTTCCTGAAAACT 100 32
HRR29_RS20520 NONE
HRR29_RS20525 4272764 .. 4272781 +  -9.9  -4.23758   CGCACACACTAAAAA             CGGTAAC GATC GTTACCG              TTTTGCATCTACCAT  87 106
HRR29_RS20535 4276291 .. 4276306 +    -6  -3.58522   CAATTCCGCTTAACC              GCCCGG CTTC CCAGGC               TTTCGCCATAATGCT  58 253
        gltB NONE
        gltD 4283568 .. 4283585 + -12.7  -5.63517   AAGTGTAAAAAAAAA             CAGGCCC GATT GGGCCTG              TTTTTTATTTCACGA 100 33
HRR29_RS20580 4287904 .. 4287924 + -14.7  -2.98493   CCTGAATATATTTTA            CGGGCGCAG CGA TTGCGCCCG            TCCTTTCCTGATGAC  88 49
        degQ 4289426 .. 4289465 +   -10  -2.81872   TTGCGCTAAGCATTT  GCGACCCGGACATCAC-CG CTG CGTGTGATGTCCGGATAAC  TCATGTTATGCTGCA  69 32
        degS 4290593 .. 4290609 +  -9.4  -5.75342   ACAGGCATAAAAAAA              CGGAGC GATAA GCTCCG              TTTTTTTTACCGGGA 100 40
        argR 4292450 .. 4292472 + -15.6  -2.89447   AACTCTAATCCCCTC           TCCCCGTAGC GCC GCTGCGGGGA           TCGTTCTGCTTCCGC  93 33
        yhcN NONE
        yhcN 4293487 .. 4293510 +   -16  -5.28481   CTCATCATACGACTT          GCCCCTGGCC TTAT GGTCAGGGGC           TTTTTTCATTCAATG 100 54
        aaeR 4300094 .. 4300115 +  -9.4  -3.34455   TCCGTTGCCCGTCGG           CGCGACGCC CATCA GGCG-CGCG           TTGAGTTTGTCCTGC  67 514
HRR29_RS20685 4313096 .. 4313108 +  -5.5  -2.77161   CCACGGCCGCGCGCT                GGTGA AAA TCGCC                TAATCTTCAAATTTT  50 10
        msrP NONE
        msrQ 4314773 .. 4314806 +  -3.2  -4.08692   CGTTACAAGAAGTTC    CGC-CAGTGGTTGCGA TAGT TCGCGAA-ACTGTGCG     TTTTCCCGCAGATTA  56 8
        aroQ NONE
        accB NONE
        accC 4317340 .. 4317356 + -13.7  -5.72622   CCTGTGTTGCTAAAA              GGCCGGA TTA TCCGGCC              TTTTTTATTTCTGGG 100 45
HRR29_RS20715 NONE
        panF NONE
        prmA 4320089 .. 4320105 +  -8.1  -3.03159   GGTAAAATAACCCTA              CAAATCA TGT TGATTTG              TATTACAAAAATTCA  63 109
HRR29_RS20730 4320939 .. 4320959 + -12.7  -3.33261   AAAGAAGAAGGGAAA            TCTGCTGTT AAA AACAGCAGA            TTATCCCGCTTCAGC  85 90
        dusB NONE
         fis 4322520 .. 4322545 +  -6.1   -5.4833   ATGCTTGTTTAAAAA         GGCGCT-CTTCG GCA TGGGGAAGCGCC         TTTTTTATTACCTGC  91 55
HRR29_RS20745 4322853 .. 4322879 +  -9.5  -2.81564   CGATTGCGCAAATCA         CCCCGTTATTA CCCAC TAAAAACGGGG         ATTTAAATCCCTTTG  69 46
HRR29_RS20750 4325064 .. 4325097 +  -9.6  -2.85351   AGTAAGCACCCTCAT     CTGGCGACACGC GAATAACCGG GAGTGTCGCCAG      TATGCTATCGACCAG  69 36
HRR29_RS20760 4327223 .. 4327237 +  -2.9  -4.15044   CGGTTAAGGGACGAC               GAAAT GGCTA ATTTC               TTTATTCAAAGACCG  56 34
HRR29_RS20765 4330348 .. 4330374 + -14.6  -4.74103   AGGTTAATGTTTCCC         TGAAAAGGCACC TCT GGTGCCTTTTTA         TTTTTAACTTAAACA 100 34
HRR29_RS20770 4330873 .. 4330902 + -14.3   -4.2828   GAAGTAACATCTGTT       GAGAAAGCGCGGC TCTG GCCGCGCTTTTGC        TTTTAATGAGTGCAA 100 34
HRR29_RS20775 NONE
HRR29_RS20780 NONE
HRR29_RS20785 NONE
HRR29_RS20790 4335560 .. 4335579 + -13.6  -4.39407   GCATAAACGCAAAAA            GGCCATCC TTTC GGATGGCC             TTTTCACTTATTTGA 100 94
HRR29_RS20820 4341728 .. 4341757 +  -3.5  -4.09243   TGTTCGCGGATTAAA       TCGCTGGCTTC CTCTTCCA GATCCCAGCGA        TTTTCACAAAATATC  58 53
         def NONE
         fmt 4347086 .. 4347104 +  -7.3  -5.61881   CAAATCTATCCTTAA             GGCCCGG TGTTT CCGGGCA             TTTTTATTTTTACGG  91 42
        rsmB NONE
        trkA 4349814 .. 4349835 + -11.6  -3.67022   TTCCTTTAAAGAATT           GGGTGCTC GAGTAA GAGCACCC            TTACTTTATCCTTTC  93 32
        mscL 4350700 .. 4350728 +  -7.5  -2.74514   GAATTGAACAGTAAA       TG-CTGCTGTGG GCCGTA CCGCAGCAGGCA        TCATTAAGCCTTTGC  51 361
HRR29_RS21035 4366383 .. 4366395 +  -4.8  -3.53343   ATTCATGGTACTCAA                CGTC GTTCA GACG                TTTAAGCCCCCAGTT  53 359
HRR29_RS21095 4374704 .. 4374718 + -11.4  -5.60993   TGAGGCACAAAAAAA               GCGGGA TTA TCCCGC               TTTTTTTGTGCCCGG 100 38
HRR29_RS21120 NONE
HRR29_RS21125 NONE
HRR29_RS21130 4381515 .. 4381525 +  -2.4   -3.5627   CGGTCAATATCATGC                 CCCG CAA CGCG                 TTTCACGGCTGATCT  47 3
HRR29_RS21135 4382668 .. 4382678 +  -8.2  -3.02263   TAATATGGGTGAACA                 GGCG TGG CGCC                 TCTTCGCGACGCTCT  57 256
         crp 4383864 .. 4383891 + -13.4  -5.09685   TTAATTCCGCTTAAA        CGGCGTGCCATC GCAA GGTGTCACGCCG         TTTTTGTCTCTATTC 100 37
HRR29_RS21150 4386129 .. 4386161 +  -6.2  -3.96892   CATCACCCCTTCGTG     GGCGGCGGCGTGCAGG AAG TC-GCGCGCC-CGGCC     TTTGTACTGCGGCTT  66 157
        tsgA 4390630 .. 4390654 + -13.6  -3.51934   CTCACTAACCCCTAC          GCCCCTTTGC GCTCG GCAGAGGGGC          TGTTTCTGGCAAAAC  93 33
HRR29_RS21185 NONE
        nirD 4395043 .. 4395057 +  -2.7  -4.18018   AAGGTGCAGCTGAAA               GGCTG ATCCC CCGCC               TTTTCAATACGAAAA  56 20
        cobA 4396574 .. 4396603 + -12.2  -3.18849   GCATATTCTTCCTTT       GCGGAGTAGTCC TTATGC GGACTACTCCCC        TCTTACTGCTGTCGA  81 42
HRR29_RS21200 4396894 .. 4396907 +  -9.5  -4.87291   TCAGGCGTAAAAAAA               CCGGG ATAT CCCGG                TTTTTGGTTGGCGTA 100 48
        mrcA 4409682 .. 4409700 + -14.6  -5.22289   GACAACAAAGCAAAA             CGGCAACC TCT GGTTGCCG             TTTTTGTGTTTGCTC 100 39
HRR29_RS21275 4412784 .. 4412819 +  -6.8  -4.33417   CTGATCTGATAACGT    CGTTGCGCGGCAAGATG TGC TACCCTGTCGCGCA-CG    TTTCTTCTGGCTGGA  74 32
        yrfG NONE
        hslR NONE
        hslO 4415083 .. 4415104 + -12.3  -4.30014   GCGATAATCCGCCTG           CGCTGTGAC TGGA GTCGCAGCG            TTTTCCGTTAGTAAG  95 280
        pckA 4416944 .. 4416961 + -12.7  -5.42862   CCGACCTACAAAAAA             GGGTGGC AATT GCCACCC              TTTTTTTAACCCTCT 100 129
        greB NONE
HRR29_RS21315 4422200 .. 4422216 +  -8.7  -3.58522   CCAAAAGGGAGAGGG              GATCGCA CGG TGCGGTC              TTTCCCCCTCGTCCT  69 72
        feoA NONE
        feoB NONE
        feoC 4425318 .. 4425337 +   -15  -4.08058   CGCTGCGTTAACAAA            GCCGGGCA TCGC TGCCCGGC             TTTATCGTATTACTT 100 30
        gntX NONE
        nfuA 4427976 .. 4427995 + -12.2  -4.36595   TGAAAACATTAAAAA            CGGTAACC TCAT GGTTACCG             TTTTGCGTTTACCTC  95 143
        gntT 4429745 .. 4429757 +  -3.3  -4.93296   AAGCGATGTGGACAG                CTTGC GAC GCCAG                TTTTTGTACTGATAG  76 205
        malT 4437452 .. 4437481 +  -4.2  -4.07885   GGTGCCCTCACCCCG       GCC-CTCTCCCAC AGGGA GAGGGAGAACGGC       TTTTCAACACAACTC  61 55
        glpD 4441351 .. 4441368 + -11.3  -4.67038   AACAAACACTAAAAA             CGGCAAC CGAG GTTGCCG              TTTTGCTTTTACAAC  95 95
        yhgN 4452884 .. 4452902 + -13.2  -4.93696   TAGGTAAATGCAAAA             CGGCAATC AAA GATTGCCG             TTTTTAGTGTTTGCA 100 38
HRR29_RS21435 NONE
        dcrB 4454749 .. 4454776 + -19.2  -5.40072   TTCACGACGATGACG        TGGCCTCCGGTG CCTG CACCGGGGGCCA         TTTTTTTAGCCGCCA 100 44
HRR29_RS21450 4457198 .. 4457223 +  -6.1  -5.33026   TAATACACCGTAAAT         TACCGCGTC CCTAATCC GTCGCGGTA          TTTTTATTTGCGTTA  89 76
HRR29_RS21455 4457859 .. 4457871 +  -3.3  -3.05877   GCTGAACCTCTCCGC                TGGCG CCG CGCTG                TAATATTTTTCTAAA  45 10
HRR29_RS21460 4459024 .. 4459041 +  -2.6  -3.67989   AGCAGCTTAGCTGCC             GGGTGG CCCAGT CTGCCC              TTTGAATACGGTTTT  52 41
HRR29_RS21465 NONE
HRR29_RS21470 NONE
HRR29_RS21475 NONE
HRR29_RS21480 NONE
HRR29_RS21485 NONE
HRR29_RS21490 NONE
HRR29_RS21495 NONE
HRR29_RS21500 NONE
HRR29_RS21505 4465496 .. 4465514 +  -5.2  -2.84051   TGAACGAATGGGAGT             GACGCCAT GAA ATGGTGGC             CTTTGCTGGCGCTGA  49 16
HRR29_RS21510 NONE
HRR29_RS21515 NONE
HRR29_RS21520 NONE
HRR29_RS21525 NONE
HRR29_RS21530 NONE
        fabG NONE
HRR29_RS21540 NONE
        acpT NONE
HRR29_RS21590 NONE
HRR29_RS21595 4483480 .. 4483492 +  -5.5  -3.90286   TGGTTCCGCCCCACC                GGTAC TGG GTGCC                TTTCCATTTCTGGTA  61 354
HRR29_RS21605 4485011 .. 4485031 +  -3.8  -3.61398   ACGCAAAGCAGCAGC            GGCGTCGC ATAGC GCTTCGCC            TTCTTCACGCGGCCA  51 450
HRR29_RS21620 4487893 .. 4487925 +   -15   -3.6834   GTCACGCATTAACGA     TGACAGAAGCGGGAC ATTT GTCCCGCTTCTG-CG      TTTAAAGATTTTCTT 100 29
HRR29_RS21630 4489507 .. 4489521 +  -2.7  -2.78384   AGGCAGGTATGTTGA               GCGAC GAGGA GACGC               TGTGATGGGGGGCAA  42 6
HRR29_RS21635 4490690 .. 4490707 +  -4.1  -3.64703   GTCACTTCTGCGGTG             CGGTAGCC TTC GG-TGCCG             TTTGGCTGAACGCGC  54 251
        pitA 4493443 .. 4493464 + -15.9  -5.65177   GAAGGCGACAAAAAA           GCGGGTCAG GAAA CTGACCCGC            TTTTTTTATGGCTGT 100 47
HRR29_RS21650 4494030 .. 4494047 + -14.1  -3.22475   AGCCAGAGGAAAGAA             GGCGGGG CTGA CCCCGCC              TGTTGTGGCGCTCAG  86 40
        uspA 4495179 .. 4495206 +  -9.9   -5.7946   AGATCGAGGACACAG       GCCGGGTAAGGCG AAGC CGCC--ACCCGGC        TTTTTTTATTCCGGC 100 90
HRR29_RS21675 NONE
        gorA 4500502 .. 4500521 + -13.6  -5.81032   ATGCGTTAATCCTGA            TGCCCCTC TCCG GAGGGGCA             TTTTTTTTAACATTC 100 32
        treF 4502475 .. 4502496 + -10.9   -5.1861   GAATCACCTCATAAA           TGGCAGTCT GAAT GGACTGCCA            TTTTTTCGTGGTGGC 100 173
HRR29_RS21695 4505172 .. 4505184 +  -4.7  -3.64703   TCGCGCACGCGTCCG                CCGCC AAA GTCGG                TTTCAATCGCGCCCG  56 465
HRR29_RS21705 4506775 .. 4506787 +  -3.4  -2.70932   AAAGCTTACGTGGAC                TAGC CGCAA GCTA                TAATTCAAAAACACA  43 23
        yhjD 4507864 .. 4507885 + -14.5  -3.32769   CCGCTAGCCCCGCTC           TCGGGCTGA AATT TCAGCCCGA            TTCATCATTTCAGCA  93 34
HRR29_RS21715 4509495 .. 4509505 +  -3.2  -3.25823   GGGAGAGGGAGAAAG                 GGAG CTA CTTC                 TTCATCTGCAACAAA  45 82
HRR29_RS21730 4513569 .. 4513591 + -13.4  -2.62667   GATGCCCTCACCCTA           ACCCTCTCCC ACA GGGAGAGGGA           ATGTTTAAGCATTAC  81 55
        bcsE NONE
        bcsF NONE
        bcsG 4533085 .. 4533109 + -20.1   -2.6381   CACGGTATGACGACG          TCCCTCTCCCC ATC GGGGAGAGGGA          TAATGTCGACATTAT 100 41
        fadB 4548056 .. 4548076 +  -3.3  -3.18681   CGGCTTAAGGAGTCA            CAATGGAAA AGG TTGTCATTG            TTGATGCGATTCGCA  47 33
        fadA 4549377 .. 4549395 +  -9.5  -5.65927   TTAGTTGCCGTTCTT             CCCGCCT GTCAG GGGCGGG             TTTTTTATTTAAATG 100 181
        rfaH 4552398 .. 4552420 +  -3.2  -3.53811   CGACGCTCTCAACAA           TGTGCCCCAG ATA CGCGGGCTCA           TTTCGCCGCGATGCC  49 120
HRR29_RS21925 4561369 .. 4561392 +  -3.7  -4.18197   TGTTCGCCAGCGCCG          CGCGCGTCT CCGGCC AGCCGCGGG           TTTTCAGTCCGCAGT  62 122
        metR 4564743 .. 4564765 +  -9.9  -2.72344   TGATCCCCAGCGTAC          CGGCGTCTAC CTGC GTAG-CGCCG           TAGTTCCACATGAAG  68 119
        rhtB 4568408 .. 4568426 +  -4.4  -2.78816   TTTTTCTCTTCTTTC             TTCAGCGC CCC GCGCAGCA             TCTGGTAGCCCATCC  44 359
HRR29_RS21975 NONE
        rarD 4573170 .. 4573201 +    -5  -4.57341   GAGGGAATTCGATCG      TAGGGCGGGCTAGCG AAG CGCCA-CCCGCCAGA      TTTTTACAGCCAGTT  72 74
        cyaY 4580642 .. 4580668 +  -3.5  -3.21395   TTGCCGGGTGGCGCT         GCGCTTACCCG GCCTA CGGGTTCGAGC         TGTTGTAGGCCCGGT  47 46
        hemC NONE
        hemD NONE
        hemX NONE
        hemY 4587716 .. 4587733 +  -9.1  -5.63504   AGCAGTAAATAAAAA             GGAGGCC AGAG GGTCTCC              TTTTTTTATCGCCTT 100 33
HRR29_RS22050 4589463 .. 4589476 +  -2.5  -4.21922   AGACAGCAAAACCCA               TAAAT AGTT ATTTA                TTTAATTTTCAATGA  58 396
        rhlB NONE
        gppA 4607965 .. 4607983 +  -3.7  -2.82717   TCCCCACGTAGGCCA             GACGGCG CTCCT CGTCGAC             GTTGTCTTCATCAAT  43 326
HRR29_RS22155 NONE
        ppiC 4610481 .. 4610501 + -15.5  -3.24021   GGAAATAAACAGCAA            GGCCTTCTC TAA GAGAAGGCC            TTGAATGTTTCACCC 100 33
        ilvY 4613155 .. 4613193 +   -11  -2.71263   AGGAAGAAGCGGAAG   GCCGGGTTATGGGTTTCG TCG TGACACTCATAGCCCAGC   TCGTTCAGCCGCGTT  66 96
HRR29_RS22205 4621547 .. 4621560 +  -9.5  -3.83375   GCTGGCATAAAAAAA               GGGGC CGTA GCCCC                TTCTCTTCATTTTAG  79 31
        hdfR 4623034 .. 4623068 + -17.3  -3.18264   CCCCTAAAGTTTTTT     GCCATTAAGCCTGCC AACAA GGCAGGCTTAATGTC     TTAATAAGTGGCGGA 100 209
        trmA 4632779 .. 4632790 +  -7.2  -4.58395   GCCGGATAAGCGTAG                CGCC ATCC GGCG                 TTTTTGGCAGGTGGC  80 48
        sthA 4635642 .. 4635664 +  -3.3  -3.56568   CGTAATCCCGCTTCC           CGCCGCG ACCATATTA CGCAGCG           TTTCCAGGCTGGTTG  49 227
        argE 4641264 .. 4641277 +  -2.4  -2.52795   TTATCTGACGCAATG               CGAA TTAAAT TTCG                TAAATTGCCCGCATT  39 133
         ppc 4644125 .. 4644157 +    -4  -3.72009   CGGACCTGTGACTGG     TAGGCCGGGTAAGCG TTAG CGCC-ACCCGGCACA      TTTCGGTAGTCTTCT  56 71
HRR29_RS22315 4644991 .. 4645003 +  -3.3  -2.87931   ATTTGTCCAGTATTT                GGCAA AAT TGGCC                TGTATCCGCCCTGCC  44 78
         fsa NONE
HRR29_RS22325 4646862 .. 4646879 + -12.7  -5.42259   TAGCGTGAATAAAAA             TCCCCGC AACA GCGGGGA              TTTTTTTGCCCGTAG 100 42
        metJ 4654578 .. 4654593 + -10.4  -5.40474   AGCGGATACAAAAAA              GGCACC TTGC GGTGCC               TTTTTTTCGGGAACT 100 43
        priA 4657250 .. 4657260 +  -2.6    -3.494   AACGCTCCTCACACT                 TTTT ATG AAAA                 TTCTGTAACCGATTC  49 59
        cytR NONE
        ftsN 4659487 .. 4659508 + -15.9  -3.82603   CTATCATTTAATTCA           GCCCTGAGC ACAG GCTCAGGGC            TTCTGTTTCCCGATT 100 62
        hslV NONE
        hslU 4661450 .. 4661467 + -12.7  -5.10461   TCTCATCACGTTTAA             TGGGGGC TAAT GCCCCCA              TTTTTATTGGCTAAA 100 56
        menA 4662419 .. 4662433 +  -5.8  -3.08032   GTTAGCTGACAAATA               TCAATT AAC AATTGA               TGATTTTGCCAACAA  52 36
        rraA 4663015 .. 4663035 +  -7.6    -5.626   AGAACCATAAAAAAA           CCGCCAACA GCAA TGT-GGCGG            TTTTTTTGTCCCCTC 100 54
HRR29_RS22400 NONE
        glpK 4666600 .. 4666626 + -14.4   -4.1899   AATCCCCCTCACCCC         GGCCCTCTCCCC AAA GGGGAGAGGGTG         TTTTAAGTCCCCTCG 100 39
        glpX 4667730 .. 4667741 +  -5.8  -2.68942   CGCAAAGACCCGGAC                GTGC AGAC GCAC                 ATTCTGTAAAACCGT  49 5
         fpr 4668574 .. 4668600 +  -8.6  -3.38046   GACCGGGCCATATGA         CCGCCGAACACT ACT GGTGATCAGCGG         TATTTCACCTCAACG  67 6
HRR29_RS22425 4670751 .. 4670765 +  -2.8  -3.14132   GATTACGTGCAGCTT               TCCC TTCAGGC GGGA               TTCATACAGCGGCCA  45 204
        silR NONE
        silS NONE
        silE 4674288 .. 4674303 + -11.8  -5.38047   TGTTGTGAGATTTTT              GCCCCC GTCA GGGGGC               TTTTTTATCTGACTC 100 101
HRR29_RS22450 4674790 .. 4674805 +  -6.1  -5.40625   GTTAAATAATTAAAA              CCCGA TTAATT TCGGG               TTTTTTATATACTAT  89 106
        cadR 4679284 .. 4679304 +  -4.7  -3.66286   CATTTAATCCGCTTA            CCCCATTTT TTT AAAGTGCGG            TTGTTCGAGTGCTAT  59 110
HRR29_RS22480 4680085 .. 4680097 +  -5.5  -2.77899   GCTACCCTAGACGAT                CCGTC GGT GATGG                TAGTTACTGCACCGG  50 309
HRR29_RS22490 4681458 .. 4681476 +   -11  -2.79023   AGCTCCATGATCTGC             GCCGTCAG TTT CTGATGGC             TCGTTGATACCCTTG  74 206
HRR29_RS22510 4686060 .. 4686081 +  -2.9  -3.14051   ATGCCTGTTGTCCCC           ATGGCACCT GAGA AGGTGACAC            TATTGGTGAAAATGC  43 355
      blaIMP 4692060 .. 4692074 +  -2.8  -3.01712   AGTTGCGCTTTTGTG               GTTTGC TTC GCAAAG               TATTCCACAACGCGC  43 91
 aac(6')-IIc 4692811 .. 4692843 + -19.3  -3.06133   AACCGGGCGTTCAAC      CGGACATCAACGTGC TGC GCACGTTGATGTCGG      TTAACTGGGGCGTTA 100 111
HRR29_RS22560 4693297 .. 4693314 +  -4.7  -3.07233   AAGTCGCTGCGGAGG             CCGACGC CATG GTGACGG              TGTTCGGCATTCTGA  50 11
        sul1 NONE
HRR29_RS22570 4694901 .. 4694924 +    -6  -4.30576   CTGTTGCAAATAGTC          GGTGGTGATA AACT TATCATCCCC           TTTTGCTGATGGAGC  69 154
HRR29_RS22575 4696079 .. 4696090 +  -4.4  -3.55548   ATTGGCCCTCAAACC                CCAT GATG ATGG                 TTTCGAAACGTCTTA  53 455
HRR29_RS22595 4697510 .. 4697520 +  -3.2  -2.86164   AGCAAAGCCTTTCGA                 GGGA AAA TCTC                 TATACTGATTCACAG  42 49
        tpiA 4698374 .. 4698404 + -11.1  -3.28714   GGCGTAATTGCCTTT      GTGGCGGGT-GGCG CTTG CGCTTGCCCGCCGC       TCTTCTCCTCCCTCT  77 34
        cpxR NONE
        cpxA 4707128 .. 4707142 +  -5.6  -4.59773   CACGCGATACAGCCA               GCCGGT TTT ACCCGC               TTTTTGCAGCTGGGC  75 325
        rhaT 4710013 .. 4710026 +  -3.8  -2.57132   TGATGAGCTTATCCA               GCAG CGCTTC CTGC                GTTGTGGCGGAGGGG  42 343
        rhaB NONE
        rhaA 4714497 .. 4714521 +  -9.9  -3.06073   TTTTGCCCTCACCCT          AACCCTCTCCC ACA GGGAGAGGGAA          CTTTTACCCCCTCTC  70 41
        rhaD 4715405 .. 4715415 +  -3.2  -3.87815   GTGAGCCCGCTGCAA                 TCCG CGC TGGA                 TTTGTACGCATAACG  54 2
        fucO NONE
        rhaM 4716937 .. 4716960 +    -8  -2.81464   TGGACTGATGTGTTA          ACGCTGCTGC CCCC GCGGCGGCGA           TCTCCTGCCTGCTGC  59 33
HRR29_RS22715 NONE
HRR29_RS22720 4723115 .. 4723129 + -12.8  -3.36073   GCATAAACTAAAAAA               GCGCCC CGG GGGCGC               TCTTTCGACGGTGTG  85 30
        fdnG NONE
        fdxH NONE
        fdoI NONE
        fdhE 4730637 .. 4730647 +  -6.8  -3.21099   GATTACCACTCCTCA                 CGCA GCT TGCG                 TTCATACTCAAGCCC  59 452
HRR29_RS22765 4732070 .. 4732083 +  -8.1  -4.36914   GTAGGTGCCTTCAAA               CACCG CACC CGGTG                TTTTATCGCCAAACA  77 109
HRR29_RS22800 4737422 .. 4737433 +  -5.8  -2.66695   GCCTGAAAGAAAGGG                GGCA GACA TGCC                 ATATTTAATGAAACA  49 90
HRR29_RS22805 4740286 .. 4740305 + -13.6   -4.8622   AATAACAATAAAAAA            GCCGCTGA GAGA TCAGCGGC             TTTTTAGTTGCCAGG 100 36
        glnA 4744028 .. 4744045 + -11.3  -5.24129   CCGTGGAAACTTTTA             GCCCATC TCCG GATGGGC              TTTTTTCTCCACCAA 100 84
        glnL NONE
        glnG 4746647 .. 4746670 +    -6  -3.93038   AAGGTTATTCATTGA          GCGCAAATTG CCGT TATTTTGCGC           TTTACTGTTCCGATG  63 58
        yshB 4746846 .. 4746885 +  -2.9  -4.54477   AGCTAGCGAGTTGAA CGTAAAAGCCGGGTGGCGGC TTC GCC-TTACCCGGCC-T-ACG TTTTGTGCATTTTGC  62 35
HRR29_RS22845 4750201 .. 4750216 + -11.8  -5.81412   AAGAGTAATACCGAG              CGCGGC GATA GCCGCG               TTTTTTTTGCCTGAA 100 33
HRR29_RS22855 4754634 .. 4754652 +   -16  -4.65895   ATCTTCATACAAAAA             CGCCGGTC AGT GACCGGCG             TTTTTACATCCGCGA 100 13
        mobA NONE
        mobB 4757868 .. 4757887 + -13.6  -3.22938   GCTTAAACGCAAAAA            GGCCATCC TTGC GGATGGCC             TCTTCACTTATTTGA  86 88
HRR29_RS22905 NONE
        mdtD 4765710 .. 4765736 +  -6.4  -3.92373   ACCAATAAAGACCGC         CTGCGGACGCGG CTT TTGCGCCAGCAG         TTTCTGCATCGCCTC  64 264
        ravA NONE
        viaA 4776505 .. 4776515 +  -6.8  -3.33696   AGCCGCCTGCTCAGA                 CGCT GGC AGCG                 TTAATTACAGAAGAG  61 11
        asnC 4778112 .. 4778131 +  -3.4  -3.35088   CGATCATGCGTACCA            TCCGCCCG TGAT CGGGCAAA             TTCATTCCCACATTT  49 15
        mioC NONE
        mnmG NONE
        rsmG 4782000 .. 4782011 +  -2.2  -4.52047   TAAATACAACCTTAT                CGCA AATG TGTG                 TTTTGTGATCTCGTG  61 368
        atpI NONE
        atpB NONE
        atpE NONE
        atpF NONE
        atpH NONE
        atpA NONE
        atpG 4787283 .. 4787298 +  -2.4  -3.56594   CTCACCGAGATCGTC              TCGGGG GCCG CCGCGG               TTTAACCAGGTTTAC  47 5
        atpD NONE
        atpC 4789180 .. 4789202 + -15.6  -6.07627   TTGAAAAGCACAAAA           GCCAGTCTGG ATA CCAGGCTGGC           TTTTTTTTTCGGCCT 100 48
        glmU 4790686 .. 4790712 + -12.2  -2.75382   TTTACCCCTCACCCT         AACCCTCTCCCC ATA GGGGAGAGGGGA         TCGTTCGGTGCGGTG  78 45
        glmS 4792868 .. 4792887 + -13.6  -5.31275   GAATAATCCCTTCAG            GCTCCACC TTCG GGTGGAGC             TTTTTTATCCTGCCC 100 35
        pstS 4794283 .. 4794315 + -12.8  -3.14683   CTACGGTTTAAGCTG     TAGGCCCGGTAAGCG TCAG CGCT-ACCGGGCATA      TTCGTAAAAACGTCT  81 88
        pstC NONE
        pstA NONE
        pstB NONE
        phoU 4798056 .. 4798070 +  -4.2  -3.05597   GAATACAGTTCTCTA               CGTTGA CGT TCATCG               CTTTTGCCGCATGGA  45 310
        adeP 4800040 .. 4800060 + -14.1  -4.07859   CCAAATAAACAGCAA            GCCCTTTTC TTC GAAAAGGGC            TTTAATGTTTGTTCC 100 33
        rpmH 4807515 .. 4807528 -  -2.3  -3.58343   TTTATTACTTGGAAA               CGGTC AGAC GAGCG                CGGCCTTTAGCACGA  47 1
        rnpA NONE
        yidD NONE
        yidC 4805218 .. 4805235 - -12.7   -5.7827   AATACAAATAAAAAA             GGCGGTC AATC GACCGCC              CTTATTTTAGCGTTA 100 51
        mnmE 4803783 .. 4803809 - -14.6  -3.31144   TTGCCATTTGGACAA         TGGTGATTTCCC GGG AGGAAATCACCA         TCAGTGAGCGGGCCT  93 40
HRR29_RS23090 NONE
        yidZ NONE
HRR29_RS23080 NONE
HRR29_RS23075 4800040 .. 4800060 - -14.1  -3.57662   CCAAATAAACAGCAA            GCCCTTTTC TTC GAAAAGGGC            TTTAATGTTTGTTCC  93 90
        yieH 4797393 .. 4797426 -  -3.8  -3.28924   CACCGCGCTGGAGAA     GTTCTCTCAGCAGCA CCAGC CGCTGCTG-GTGAGC     CTGGAGTCGCTGGGC  47 464
        asnA 4775986 .. 4776025 -  -4.9  -3.12446   GAGAAAGTCAGCCAA  CGGCCGGTCGTCCATCA GGATTT TGATGAACAGCCGCGCG   GGCCATTCATTGTTT  47 520
         kup NONE
        rbsD 4770854 .. 4770872 -    -3  -3.15544   TTTGAGTTGCAGTAA             TGCGTCCA TGA TGGCCTCA             GAATGTGACGCCAGC  45 23
        rbsA NONE
        rbsC NONE
        rbsB NONE
        rbsK NONE
        rbsR 4765198 .. 4765225 -  -6.2   -3.4252   CCTGACTGACGAGAA        CGCCAGTA-GCGG CAA CAGCGTGCTGGCG        GTAACGCAACAGCTG  56 237
HRR29_RS22900 NONE
HRR29_RS22895 4761108 .. 4761143 -    -7  -4.00532   TTTTTAAAGAGCAAA    TATCTCAAACGTCACC CGAA GATGAGTTTTGAGATA     CTGAGGCAGGTGACT  68 61
HRR29_RS22890 NONE
         rrf 4757868 .. 4757887 - -13.6  -4.81249   GCTTAAACGCAAAAA            GGCCATCC TTGC GGATGGCC             TCTTCACTTATTTGA 100 42
HRR29_RS22870 4756397 .. 4756407 -  -8.2  -2.71731   TTTACTCTTTAATTA                 CGCC TCG GGCG                 CGCAGTAATGCGGTC  61 1
HRR29_RS22865 NONE
        dsbA 4754634 .. 4754652 -   -16   -4.9725   ATCTTCATACAAAAA             CGCCGGTC AGT GACCGGCG             TTTTTACATCCGCGA 100 43
        polA 4750255 .. 4750280 - -19.1   -5.4833   TGACGCAATAAAAAA         CGCCCCAGTCA TTAC TGACTGGGGCG          GCTAAAATATTCAGC 100 250
        yihI 4748420 .. 4748438 -  -6.1   -3.3636   CCACACCAGATAACA             TATAACC GGAAG GGTTATA             AGCAGGACTATCGTG  59 58
        hemN 4746853 .. 4746880 -  -9.9   -4.2803   GAGTTGAACGTAAAA       GCCGGGT--GGCG GCTT CGCCTTACCCGGC        CTACGTTTTGTGCAT  87 54
        typA 4740276 .. 4740315 - -15.2  -3.93256   TACAGCTTCAAATAA  CAATAAAAAAGCCGCTGA GAGA TCAGCGGCTTTTTAGTTG   CCAGGTGGCGCTCAC 100 68
HRR29_RS22795 NONE
HRR29_RS22790 NONE
        yihX NONE
HRR29_RS22780 NONE
         dtd NONE
        fabY 4731718 .. 4731742 -  -6.3  -2.87931   TGTATCTTGCAGAGA          CTGACCGCCAG CAT CCGGAAGCCAG          CCCGCTGTGGCGCGA  51 278
HRR29_RS22760 NONE
HRR29_RS22755 4730088 .. 4730099 -  -2.2  -4.77036   CTGTATCAGGAAAAA                GACC CGAA AGTC                 GAAGCCGTGGCCGAC  70 176
        fdhD 4723396 .. 4723406 -  -6.8  -3.05715   AAGTTGTTTAGGTAA                 GGCA CCG TGCC                 TTGATGAGATAAATA  57 96
HRR29_RS22725 4723115 .. 4723129 - -12.8  -5.42514   GCATAAACTAAAAAA               GCGCCC CGG GGGCGC               TCTTTCGACGGTGTG 100 46
HRR29_RS22710 NONE
HRR29_RS22705 4720404 .. 4720426 -    -7  -3.60098   AGTGTTGATCCGAAA           CGTTTCGGAT ACA AACCAAAACG           TTTCGGTTCTGTGAT  63 62
HRR29_RS22700 4718211 .. 4718228 - -14.1  -2.53263   TTTATCCTCAACGGA             GGGCCGG TTCC CCGGCCC              GTCACCCTTACACGC  83 33
HRR29_RS22695 4716884 .. 4716905 - -12.3  -3.33261   GTCGAACCCGGATAA           CAGCCCGGT GAGT ACCGAGCTG            AAAGAGGTCTTTTAC  85 37
        rhaS NONE
        rhaR 4709261 .. 4709271 -  -8.2  -3.19656   AAACCGATGCACGAA                 GCGG CGG CCGC                 GCTGGGCGTCGACCC  59 450
        sodA 4707711 .. 4707728 - -11.3  -5.77988   ACAGATACAAAAAAA             GCGAGTC ATAA GACTCGC              TTCTCACAGGCGTCA 100 49
        yiiM 4706492 .. 4706519 -   -12  -3.64703   GCCGCTGTACGGAAA        CCCCAACACGCT GGAA AGCGCGCTGGAG         AACATCGTGCGTAAC  81 388
        cpxP 4704047 .. 4704065 - -14.6  -5.75342   GCGGGGCAAAAAAAA             CCCCCACA TCA TGTGGGGG             AAGACAGGGATGGTG 100 63
        fieF NONE
        pfkA 4701856 .. 4701875 - -12.2  -5.38249   AGCAACCATAAAAAA            CGGTAACC CAGG GGTTACCG             TTTTGCATTTACCTT 100 70
HRR29_RS22615 4700649 .. 4700671 - -11.3  -5.68438   TGACCAAATAAAAAA          CCCGGCG-GA TTTC TCACGCCGGG           TCACCGTTTCACAGG 100 48
HRR29_RS22610 4699771 .. 4699812 -  -6.7  -2.94126   AACCAGAGCGACATA CCTGTCTCCTGTAGAATT TTTCAGC AAGTCTAC-GGTGACAGG CAGCCCGAGTAAACG  55 56
HRR29_RS22605 4698018 .. 4698033 -  -3.2  -3.36823   GCGGGCAAAACCGAA              GAAGTG TGCG CACGTC               AGATCGACGCAGTGC  47 457
HRR29_RS22590 4696221 .. 4696235 -  -3.6  -2.58544   GCGCATTTTCATAAT               CCAAAT AGG ATTTGA               GACGCCTACCCCTAC  43 187
       intI1 4689781 .. 4689794 -  -6.7  -3.03124   GTTGACCTTGCAAGA               TGCCT CCAA AGGCA                AAAGTGTCAGGATGA  55 319
HRR29_RS22540 4689056 .. 4689091 -  -6.7  -3.84514   ATCGCAAGTAGCAAA    GCTGCACAGCGAAGC CCAATC GATTCGCGGCGCCGC     GACGCTGACGGATCA  66 155
        frmR NONE
        frmA 4687095 .. 4687108 -  -3.1  -3.09878   TTGACTCAGTTAAGA               CGCTA TCAG TAACG                GATTACCGTACGGAT  43 17
HRR29_RS22520 NONE
        fghA 4685352 .. 4685374 -    -4  -4.60487   GATGACGCTGAAAAA           GCAAATCGAG CAA CACGAGCTGC           GGATTGTCAGCCTCG  70 409
HRR29_RS22505 4681709 .. 4681730 -    -3  -4.28375   TGAACAGACCGAAAA          CTACGGACGG TATG CCG-CCG-AG           CCTAACGAGGTTCAG  60 235
HRR29_RS22470 NONE
HRR29_RS22465 NONE
HRR29_RS22460 4675759 .. 4675790 -  -4.4  -5.02074   TCAGCCCGGAAAAAA      TTCAACAGGATAAG CCTC CTTATCCCGCTGCC       GCGCTTATTGATGGG  76 208
        rcnR 4668723 .. 4668751 - -11.9  -2.87564   CTACTTCTTCAGATA        GACCTACTTAACA GGA TACTAAGTAGGTC        ATCTCCTTTCTCGCG  77 342
        zapB 4663520 .. 4663547 -  -9.9  -5.42265   TCAAATCATAAAAAA       GCCGGGT--GGCG GCTT CGCCTTACCCGGC        CTGTTCAATTCATCC 100 50
        rpmE 4654578 .. 4654593 - -10.4  -5.37043   AGCGGATACAAAAAA              GGCACC TTGC GGTGCC               TTTTTTTCGGGAACT 100 40
        metB NONE
HRR29_RS22340 4650302 .. 4650341 -   -10  -2.66748   TATGAGGGAAATTCA  GGATGAGGGTGAGTGC GGTCTGAT GCCCTCACCCTAACCC   TCTCCCACAGGGAGA  68 55
        metF 4649228 .. 4649246 - -14.6   -4.8622   TCGCGTAACTAAAAA             GCCCTCGT AAT ACGAGGGC             TTTGTGCTTATTACG 100 36
        katG 4646862 .. 4646879 - -12.7  -5.07486   TAGCGTGAATAAAAA             TCCCCGC AACA GCGGGGA              TTTTTTTGCCCGTAG 100 75
        argC NONE
        argB NONE
        argH 4636585 .. 4636602 -  -9.9  -4.73108   GGGATAAAAGCAAAA             TGGCAAC CGAA GTTGCCA              TTTTTAGTGTTTGCT  93 100
        oxyR 4635045 .. 4635055 -  -2.4  -4.07885   CAGGCGCTGGTAAAA                 GGCG AAG CGAC                 GGCGCACCTGATCGA  56 393
        fabR NONE
HRR29_RS22270 4632773 .. 4632812 - -11.4  -3.30124   CTGTAGGCCGGATAA  GCGTAGCGCCATCCGGC GTTTTTG GCAGG-TGGCGCTTCGC  TTACCTGCCCTACAA  79 49
        btuB NONE
        murI 4628661 .. 4628671 -  -3.2  -4.07568   CTTTTTTGCTCAAAA                 CCGT GCT ACAG                 CGCCAGTTTTTCGAG  56 20
HRR29_RS22250 4626711 .. 4626724 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGGCAGGTTCTT  39 36
HRR29_RS22245 NONE
HRR29_RS22240 4626423 .. 4626456 -  -6.7  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGTGCACCT TTTC AGGTTCACTCTGAAG      TTTTCTTGTGTTCGC  75 50
HRR29_RS22235 NONE
         rrf 4623174 .. 4623190 -  -2.2  -2.71483   AGACTGCTGTAACCA              CCGG ATTTATGCA CCGG              CTTACTACTTAATTT  39 44
HRR29_RS22225 4623042 .. 4623060 - -11.7  -3.14132   GTTTTTTGCCATTAA             GCCTGCC AACAA GGCAGGC             TTAATGTCTTAATAA  79 42
HRR29_RS22220 4622921 .. 4622940 - -10.8  -5.81412   TTCAGGCAAAAAAAA            TCCTTTGC CGAA GCAAAGGA             TTCTATATGGCAGGG 100 33
HRR29_RS22210 4621547 .. 4621560 -  -9.5  -5.60993   GCTGGCATAAAAAAA               GGGGC CGTA GCCCC                TTCTCTTCATTTTAG 100 37
        ilvL 4619534 .. 4619557 - -13.8  -5.64274   TTAGTCATAAAAAAA          CCCCCGGACC TTTC GGTGCGGGGG           TCTTAGTTCGTTAAG 100 50
HRR29_RS22195 NONE
        ilvM NONE
        ilvE 4616557 .. 4616578 - -11.6  -3.09516   CGTCTGACTATTTAA           TGGGACGG TGCGTG CCGTCCCA            AATTTATGCTTAGTG  78 35
        ilvD NONE
        ilvA 4613030 .. 4613046 -  -9.4  -5.60993   GTGCGCACAAAAAAA              GCGGCT GCATG AGCCGC              TTATTGATGCGTTCT 100 109
        ilvC 4610475 .. 4610508 - -13.3  -4.44046   TGTATCGGAAATAAA     CA-GCAAGGCCTTCTC TAA GAGAAGGCCTTGAATG     TTTCACCCTCTCCCA 100 83
         rep 4607676 .. 4607706 -  -6.2  -3.06315   GTAATACGCTGAACA     GTGCCGGGT--GGCG GCTT CGCCTTACCCGGC-C      TACAACCCCTTCGAA  55 42
        trxA 4604340 .. 4604369 -  -7.3   -4.1413   AAGATATGTTTAAAA       CGAAGTCATAGCTA ACT TAGC-ACGACTTCA       GCCGGGCGTCCAGAG  71 87
         rho 4602787 .. 4602806 - -13.6  -5.54907   TCCATAAAAGAAAAA            CGCCACGT AAAA ACGTGGCG             TTCGCTGGCTTTATT 100 45
        wecA NONE
        wzzE NONE
        wecB NONE
        wecC NONE
        rffC NONE
        rffA NONE
        wzxE 4594907 .. 4594920 -  -2.3  -2.74012   CCAGGATGTGAATCA               GTGCA GTCA TGCGC                GTTTACGCCACAATA  39 18
HRR29_RS22090 NONE
        wzyE NONE
        rffM 4591628 .. 4591643 -  -5.4  -4.08064   AATGGTTTCCTAAAA              TCTGCC AAAT GGCAAA               CGATGCATTAAAAAA  66 117
HRR29_RS22075 NONE
HRR29_RS22070 4589973 .. 4589986 -  -2.3  -4.25104   GCGCCGGGACTAAAA               TGGCG CGCC CGACA                GGATTCGAACCTGAG  58 12
HRR29_RS22065 NONE
HRR29_RS22060 NONE
HRR29_RS22055 4589576 .. 4589591 - -11.8  -5.86976   GCAGAAAACAAAAAA              CCCCGC CGAA GCGGGG               TTCAAAATTGGTCGG 100 34
        cyaA 4580223 .. 4580234 -  -4.4  -4.71223   GGAGAAGACACAAAA                GCAA GAGT TTGC                 CGCTTTCCTGCAACG  69 508
HRR29_RS22015 4579973 .. 4579983 -  -2.4  -3.32022   GTCGTCAGAGATTAA                 CCTG AGT CGGG                 CCACCGTTGTCGCCA  45 4
        dapF NONE
HRR29_RS22005 4578403 .. 4578420 -  -2.6  -2.78463   AGTCCGTCCATCATA             CGCGCT CAATCC AGCGCT              CCAGCAGCTCGGGCA  42 3
        xerC NONE
        yigB 4576704 .. 4576731 - -15.6  -3.15996   TAGTATTCAGGAACA        CAGCGAAGCGCC CGGT GGCGCTTCGCTT         ACCGGGCCTACAACT 100 77
        uvrD 4574279 .. 4574310 -    -8  -2.82623   GGTCGCTGACAACCA      CTAAGGCCATCAGC AAGA GGAGATAGCCTTAG       GAGTTGTTCCTGGAT  59 228
        corA 4572737 .. 4572751 -  -4.2  -2.63073   GGTGCGTAAGAAGAT               TGCGGT GGA AGCGCA               GACGGGGATGCTGTT  42 479
        pldA 4570609 .. 4570630 - -12.3  -4.14397   ATGCCAGAAATGAAA           CAGGCGCTA TTTT CAGCGCCTG            AGAGAGAAACTTCAA  95 68
        recQ NONE
        rhtC 4567985 .. 4568006 -  -4.4  -3.76224   GCGGCATGGATTAAA           GGGCCT AAGCAGATGA AGGCCC            TGAATAAAGTCTTTG  56 90
        pldB NONE
        yigL 4565425 .. 4565480 -  -5.5  -2.58249   GATAGTGGTGATAAT GAGTAGCGCCACAATGCTTGTCTCTC AGAAA GAAGGAGAGGCATTGTAGCGA-ACTC TTTAGTTGACAACTG  49 64
HRR29_RS21940 4564225 .. 4564235 -  -4.6  -4.07568   CGCTGGCCGCCAAAA                 CGCG CGT CACG                 CCGGAAGACCTGGCG  62 327
        metE 4561281 .. 4561308 -  -7.6  -5.80364   AGCGTAATAAAAAAA        GCCCGGTGGCGGC TAT GCCTT-ACCGGGC        CTACGCATCATCAAG 100 36
         udp 4559412 .. 4559428 -  -9.4   -5.0666   TACGCAAAAAATAAA              GGCCGA ACGCG TCGGCC              TTTGATTTCAGAAGA 100 46
        rmuC 4557830 .. 4557847 -  -2.6  -3.10612   GTGAAGTGTAACAGA             TTGGGC GCGTTT GCCCTA              CGTTTCAACCACCGC  43 30
        ubiE NONE
        ubiJ NONE
        ubiB 4554728 .. 4554758 -  -6.8  -2.81256   ATAGATGATTAATGA       GTCAGGCCGCAT TATACGT ATGCGACCCGTC       GATAGCGACGCACGC  56 41
        tatA 4554430 .. 4554443 -  -2.3  -3.71672   GCTCACTAAAACCAA               TGTCG AACA CGACT                TACACCTGCTCTTTA  50 25
        tatB NONE
        tatC 4553102 .. 4553117 - -11.8    -3.885   ATCCCCATATAACAA              CCGCCC TGAC GGGCGG               CTGGTTTTACTCTTC  95 32
        tatD 4551924 .. 4551943 -  -2.1  -5.02074   TCACGCTTGAAAAAA            TGCAGCGC GGGAA GCGC-ACA            ACCGTCAGTGAGCCG  74 382
        ubiD NONE
         fre 4548940 .. 4548953 -  -5.2  -5.00616   CTGGCGCTGAAAAAA               GCGG GATTAA CCGC                CAGCGACATCGACCT  83 476
        pepQ NONE
HRR29_RS21845 NONE
        trkH NONE
        hemG 4541464 .. 4541490 -  -9.3  -2.85069   AATTGTTAAAGAGCA         GTGCCGCTTCG CTTTT CGCAGCGGCGC         GGGGTGTGCATATTA  65 209
HRR29_RS21830 4539746 .. 4539759 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGGCAGGTTCTT  39 36
HRR29_RS21825 NONE
HRR29_RS21820 4539458 .. 4539491 -  -6.7  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGTGCACCT TTTC AGGTTCACTCTGAAG      TTTTCTTGTGTTCGC  75 50
HRR29_RS21815 NONE
         rrf 4536201 .. 4536234 - -16.9  -3.50877   GCAGCCTATAAAAAC     GCAAAAAGGCCATCC TTGC GGATGGCCTTTCTAC      TTATTTGACGCCTGG 100 35
        murB NONE
        birA 4534117 .. 4534132 -  -2.6  -2.57132   GGGTTTTCGCATAAT              TAACTCG ATC CG-GTTA              TTCGGCACTTCGCAG  40 23
HRR29_RS21795 4533022 .. 4533044 -  -4.1  -4.36554   CAGTATCAGAACAAA          CCGTACGTTC GCCT GAACGG-CGG           GGATTGGGTACCGTA  64 102
HRR29_RS21775 NONE
        bcsQ NONE
        bcsA NONE
        bcsB NONE
        bcsZ NONE
        bcsC 4518794 .. 4518816 -  -3.2  -4.37886   TGACTCTCCACAAAA           CTCGAAGCGC AGG GCGCGCCAGG           GTGTAAACCTGGCGC  62 105
        hmsP 4516737 .. 4516769 -  -4.2  -3.71991   CACAAATGTTAAGAA     CTTTG-AGCTGGCTC GCAC AAGCCAGCAACAAAA      TTACACTTTTGCGTT  56 26
HRR29_RS21740 4515130 .. 4515154 -  -4.1  -5.00616   TTCCTGGTTAAAAAA          GAGTGTTTCGC GAC GCGCTTCACTC          TTAAAGATGACGATG  76 195
HRR29_RS21735 4513543 .. 4513566 - -13.8  -2.71011   ATGCCTGTTTAAGGA          GGGTGCGGGC TGAT GCCCTCACCC           TAACCCTCTCCCACA  83 62
        pdeH NONE
HRR29_RS21720 4509423 .. 4509456 -  -6.7  -3.29947   GACGCACGAGACGAA     GCATCAGGCT-CTGTA ATT CACTGCGGCCTGATGC     CCTCACCCCGGCCCT  59 68
HRR29_RS21700 4504799 .. 4504818 -  -2.8  -3.95424   ACTATTAAGAGGAAA            CGAATATC AAAC GTCATTCG             CTGAAAATATTTTCT  54 207
HRR29_RS21690 4502064 .. 4502076 -  -5.5  -3.88291   GAGCAGTGGGATAAA                CCCAA CGG CTGGG                CGCCGCTGCAGTGGA  61 404
        prlC NONE
        rsmJ 4495126 .. 4495175 -  -9.3  -2.73159   GTAAGTGCGTTAAAC TCCCCTCACCCTA-ACCCTCTCCC AAA GGGAGAGGGAATAGATCGAGGACA CAGGCCGGGTAAGGC  64 62
        uspB 4494030 .. 4494047 - -14.1  -4.05208   AGCCAGAGGAAAGAA             GGCGGGG CTGA CCCCGCC              TGTTGTGGCGCTCAG 100 37
HRR29_RS21640 4490178 .. 4490196 -   -11  -3.77831   TGATCAATAGCGAAA             CGCTCGCA CAC TGCAAGCG             GAACGCCATTCTGGT  78 326
HRR29_RS21625 4487898 .. 4487921 - -16.8  -2.87136   GCATTAACGATGACA          GAAGCGGGAC ATTT GTCCCGCTTC           TGCGTTTAAAGATTT 100 31
HRR29_RS21615 4485771 .. 4485791 -  -6.8  -3.53012   CTCTTCGCCCTCAAA           GTCGCGGCC TTCC GGCCACG-C            AAGGAGGAGTACTTT  63 73
HRR29_RS21610 4484172 .. 4484184 -  -9.1  -3.13403   GGGCGTGGATGAACA                CTGGC TGC GCCAG                CAGGCGGAAGCCTTT  60 488
HRR29_RS21600 4482964 .. 4482978 -  -3.4  -5.22943   ATGAAATCGAAAAAA               CCGGCA AAT CGCTGG               AGCAGCTGGCGAAAG  81 204
HRR29_RS21585 4480774 .. 4480809 - -15.6  -6.32017   AACAAACAAAAAAAA    TCCCGGCCATTTCAAA ATAA TATGAAATAGCCGGGA     ACTTTTCTTTTTAGT 100 56
        arnB NONE
        arnC NONE
        arnA NONE
HRR29_RS21565 NONE
        arnT NONE
        arnE NONE
HRR29_RS21550 4472773 .. 4472803 -   -14  -3.75153   CTTTGCGAAGGGAAA       TCCGCTGTGGTTCA ACC TGAGCCACAGCGGT       GACGATATCGCCCTG 100 360
HRR29_RS21445 4454638 .. 4454652 -  -5.6  -4.31835   AAGGTCGATAACAAA               CTGCTG ACC CTGCAG               ATCACCCTGCCAGCC  69 108
        tusA 4452884 .. 4452902 - -13.2  -4.36595   TAGGTAAATGCAAAA             CGGCAATC AAA GATTGCCG             TTTTTAGTGTTTGCA  95 148
         asd 4450961 .. 4450977 - -12.3  -5.82316   AGTACGCAAAAAAAA              GGGGTGA AAA TCACCCC              CGGTAGTTAACAAAT 100 43
        glgB NONE
        glgX NONE
        glgC NONE
        glgA NONE
        glgP 4441351 .. 4441368 - -11.3  -4.97461   AACAAACACTAAAAA             CGGCAAC CGAG GTTGCCG              TTTTGCTTTTACAAC 100 34
        glpE 4439132 .. 4439142 -  -2.4  -2.86743   AAAGGGGACAGTATA                 GCGG GAT CAGC                 GCTCAAAAGCGTATT  40 21
        glpG NONE
HRR29_RS21375 4437037 .. 4437055 -  -8.8  -2.55074   TTGAAGGTGAAGTGA             TGGCGCAG CAG CTGCGTCA             GCTTATTCAGCTCAA  57 455
        malP NONE
        malQ 4429575 .. 4429601 - -10.1  -5.08824   GTTTGATGTAAAAAA        GCCGGGT-GGCG CTGA CGCTTACCCGGC         CTACATTCTATTCCC 100 70
        bioH 4425666 .. 4425694 -  -5.3   -3.8211   TCGTAGGCAGAACAA        CCGCAACGACA TCTGGAG TATGGTTGCGG        TGTGTTACTTTTTCC  59 59
HRR29_RS21335 4425318 .. 4425337 -   -15  -4.15044   CGCTGCGTTAACAAA            GCCGGGCA TCGC TGCCCGGC             TTTATCGTATTACTT 100 35
        ompR NONE
        envZ 4416944 .. 4416961 - -12.7  -5.28176   CCGACCTACAAAAAA             GGGTGGC AATT GCCACCC              TTTTTTTAACCCTCT 100 31
        nudE 4409682 .. 4409700 - -14.6  -4.70353   GACAACAAAGCAAAA             CGGCAACC TCT GGTTGCCG             TTTTTGTGTTTGCTC 100 82
HRR29_RS21260 NONE
HRR29_RS21255 4405716 .. 4405732 -  -2.2  -3.62046   CCAGCGTTCTAACAA              GGTATC CATGC GTTACC              CCTCGCTTTTAAGAT  47 21
HRR29_RS21250 NONE
HRR29_RS21245 NONE
        hofQ 4403595 .. 4403609 -  -3.4  -2.98381   CAACTGATTAAATCA               CCGCGC CGG GCGCAT               AAGGTAATAAGACGC  45 141
        aroK NONE
        aroB 4401736 .. 4401755 -    -5  -2.85354   CACCTGAAGCTAAAC            GACCACCTG CGA CAG-TGGCC            TGACCTTTCTAGTTG  49 41
        damX 4400331 .. 4400352 -  -6.6  -2.83409   GACTAACTGATTACA           CCTTCTCC GGCTGT GGAGAAAG            CTCCGACAGCATCCT  54 53
         dam NONE
         rpe NONE
         gph 4397546 .. 4397556 -  -2.4  -3.56594   GTAAATCGCGTTAAA                 GCGC TGG GCGA                 TATCGCGGCTCAGCT  47 496
HRR29_RS21180 4390601 .. 4390613 -  -4.7  -3.41051   CCACCGCCAGCACAA                CGCGG CGG CAGCG                TCTCACTAACCCCTA  54 38
        ppiA 4388556 .. 4388576 - -11.1  -3.49475   GGGAGGGTCACATAA            CGCGGGC AGAAGAA GCCCGCG            CTCAGAAGAATTACG  82 36
HRR29_RS21165 NONE
        pabA NONE
HRR29_RS21155 4385909 .. 4385937 -  -7.5  -3.05844   TGGGGCATCTGAACA       CCATGCACACCA TTTCGT CGGTG-GCATGG        CGTCAGCGTCCGCAT  54 82
HRR29_RS21140 4382229 .. 4382247 -    -3  -4.07568   CGTTTGCCGCTAAAA             GCATCCCG TCG CTGGATGA             GAGCTTTGTGGTGAT  58 282
        kefG 4377597 .. 4377609 -  -2.6  -3.14564   CGATCCTTCCATTAA                CGAC CTCCT GCCG                GAATAGGTGACGCCA  45 9
        kefB NONE
HRR29_RS21105 NONE
        slyD 4374704 .. 4374718 - -11.4  -5.64274   TGAGGCACAAAAAAA               GCGGGA TTA TCCCGC               TTTTTTTGTGCCCGG 100 196
        fkpA 4373383 .. 4373403 - -18.3  -5.88565   CCCACAATAAAAAAA            CCGCCGCCT GAA AGGCGGCGG            TTTTTTTCAACATTA 100 38
HRR29_RS21085 NONE
        tusD 4372148 .. 4372164 -  -2.9  -2.64218   ACGCTTCATCAGAAT              TGCACCA CTC TGTCGCA              GGTTAATGCCGCCTG  41 2
        tusC NONE
        tusB 4371410 .. 4371432 - -10.6   -4.7268   AAACACGTAATAAAA           CGACCTCATA CAA TATGAGGACG           CGAAATTTTAGGGCT  93 80
        rpsL NONE
        rpsG 4370365 .. 4370401 - -13.8  -2.54896   CGTTCAGTTAAGTTA   CCCAGAGCGGGCGGCTTC TCT GAAGC-GCCCGC-CTGGT   GACTAATACTCCGAA  83 45
        fusA 4368160 .. 4368184 - -16.5  -2.78935   ATATTCCTTACTATA          GTGCTCTCCCC TGT GGAGAGAGCAC          GGGACTTAGGTTTTA 100 51
         tuf 4366910 .. 4366939 - -12.3  -4.38712   CTGAGCGGCAGAAAA       CAAAAAAGGACGC CGAA GCGTCCTTTTTTT        ATTCGGGGATAATTA 100 42
         bfd NONE
         bfr NONE
        rpsJ NONE
        rplC NONE
        rplD NONE
        rplW NONE
        rplB NONE
        rpsS NONE
        rplV NONE
        rpsC NONE
        rplP NONE
        rpmC NONE
        rpsQ 4360189 .. 4360214 - -14.9    -5.252   TATGGGTAGAAAAAA         TAAACGGCTCA TCGC TGAGCCGTTTA          TTCGTATTGAGAAGG 100 50
        rplN NONE
        rplX NONE
        rplE NONE
        rpsN NONE
        rpsH NONE
        rplF NONE
        rplR 4357176 .. 4357186 -  -3.2  -3.32963   ACCTCTACCTTAGAA                 CTGA AGG CCAG                 CTTCACGGGCAGCAT  47 9
        rpsE NONE
        rpmD NONE
        rplO NONE
        secY NONE
        rpmJ 4354485 .. 4354514 - -12.3   -4.6645   TACAGACATACAAAA       GATTG-GCTGGCTA ATC TAGCCAGCTCAACC       CAACTTTGCAAGAAA 100 55
        rpsM NONE
        rpsK 4353628 .. 4353646 -  -4.4   -5.1848   AACTAACCTAAAAAA             CGGAGCGT TAT ACGCGACG             TTTTTTCGGCGGACG  79 14
        rpsD 4352978 .. 4352996 - -10.4  -3.14132   TCTCTTTGGTACTAA             GCTTTACT TGG AGTAAAGC             TCGACGATCAGGTGT  74 10
        rpoA NONE
        rplQ 4351508 .. 4351521 -  -9.5  -5.71712   GCGGATATAAAAAAA               CCCGC CGGA GCGGG                TTTTTTTACGTTACT 100 46
HRR29_RS20890 NONE
        zntR 4350611 .. 4350624 -  -4.5  -2.52516   GGGTTTATGACGAAG               CGAGT CTAG ACCCG                GTTGAACTAAAAATC  44 39
HRR29_RS20880 4350277 .. 4350300 -  -7.4  -3.91465   CCGTAAAAAAGAAGA          GCCGGCTGCAG CAC CTGC-GCCAAC          GAAAGAAGAAGTGCT  66 90
        dprA NONE
HRR29_RS20845 NONE
HRR29_RS20840 NONE
        tsaC 4342727 .. 4342740 -  -3.1  -2.99543   GATTACCAAAAACAG               CATAG GTTT CCATG                AGATTACCCCTGGCG  43 29
        aroE NONE
HRR29_RS20825 4341594 .. 4341615 - -13.7  -3.39908   GCCCGGTAAAACAGA           TCCGCCCCC TGAA GGAGGCGGA            GATCGAAGGATTAAA  83 86
HRR29_RS20815 4339050 .. 4339081 -  -9.6  -4.49756   TTTTAAAGAGCAAAA      CTTCTTAATGCACT CAAA AGTACATTCAGAAG       TTCATCATTCATCAG  90 70
HRR29_RS20810 NONE
         rrf NONE
HRR29_RS20800 NONE
         rrf 4335553 .. 4335586 - -16.9  -2.91276   TTTTCGCGCATAAAC     GCAAAAAGGCCATCC TTTC GGATGGCCTTTTCAC      TTATTTGATGTCTGG 100 35
        envR 4324836 .. 4324875 -  -2.2  -3.55563   AGCTCAGCGGCGAAA GCGAGGATGCCACTATTG TCTCAG CGATTGTGGC-TC-TCGC  TAAAACACTTAACCT  47 119
        csrD 4309867 .. 4309892 -  -2.6   -4.4009   CCTGATGTTACAAAA         TCATCCCCTGA TTCCC TCA-GGGCTGA         GTAAACAGTAGCGTT  62 147
        mreB 4308657 .. 4308675 - -13.2  -4.12532   CGCGTCAGAGAGAAA             GGGTAGCA AAT TGCTACCC             TCTCAAACTCGACTA  95 38
        mreC NONE
        mreD NONE
         maf NONE
         rng NONE
HRR29_RS20650 NONE
        tldD 4299425 .. 4299437 -  -4.8  -3.33361   GATCAACGAGATCAA                CAGC GGCGT GCTG                GAGATCCTCTTCCCG  51 271
HRR29_RS20635 NONE
        aaeA NONE
        aaeB 4295350 .. 4295368 - -11.7  -5.65177   ATAGCCACAAAAAAA             CCGACGC TTTTG GCGTCGG             TTTTTTTACTTCAGT 100 40
HRR29_RS20620 NONE
HRR29_RS20615 4293171 .. 4293182 -  -2.2  -4.72272   GCCGTTGAGTAAAAA                CCCT ATTC AGGA                 GTAAAGACTATGAAA  63 363
         mdh 4290593 .. 4290609 -  -9.4  -5.65177   ACAGGCATAAAAAAA              CGGAGC GATAA GCTCCG              TTTTTTTTACCGGGA 100 52
HRR29_RS20575 4286000 .. 4286026 -  -2.2  -4.17296   GCCGACACATAGAAA         GTTTCGGGAAAA AAA CCTTCTCGTAAC         GTGGGGTCGCAAGAT  55 167
        rplM NONE
        rpsI 4284992 .. 4285005 -  -9.5  -5.64274   TTATCCATAAAAAAA               CCCGC CGAA GCGGG                TTTTTCGCCAATCGT 100 60
        sspA NONE
        sspB 4283568 .. 4283585 - -12.7  -6.10489   AAGTGTAAAAAAAAA             CAGGCCC GATT GGGCCTG              TTTTTTATTTCACGA 100 30
HRR29_RS20540 4275557 .. 4275573 -  -5.7  -4.02022   CCGAAGGATCAGAAA              GCGGTGA AAG CCGCCGC              GCAAACCATGCGCGC  64 495
HRR29_RS20530 4272764 .. 4272781 -  -9.9  -4.84527   CGCACACACTAAAAA             CGGTAAC GATC GTTACCG              TTTTGCATCTACCAT 100 20
        lptF NONE
        lptG 4263570 .. 4263599 - -17.9   -2.7169   TGAAACAGGAGATTA       GCCTCGCTTCCGG TTAA CCGGAAGCGAGGA        GAGGTCAATCAGGAG 100 34
        arcB NONE
        elbB NONE
        mtgA 4259254 .. 4259277 -  -4.4  -3.76482   TGAGATCACCAACAA          GCTGGGTATG CATG CACGCCCGGC           GATGAAGCTGTTTGA  56 279
        mlaF NONE
        mlaE NONE
        mlaD NONE
        mlaC NONE
        mlaB 4248192 .. 4248216 -  -8.5  -5.04356   TTAAACAAGCAAAAA          GCCCCGACGAT GAA ACAGTCAGGGC          TTTCGGAAGTAACGC  91 51
        ibaG 4247834 .. 4247864 -  -6.7  -3.32997   CTCTTATAAATTCAA       CCGTGCTGCGGGC CTGTC GCCCTCAGCTCAA       AAACCGTTTAGTTTG  59 22
        murA 4246508 .. 4246544 -  -9.4   -3.2614   CATTTTTGACAGGAA   CAGCAACCCCCCGGTCA TTGC TGGC-AGGGGGCTGCCG    GAACGATTACTCGCC  68 32
        rplU NONE
        rpmA 4244106 .. 4244127 - -15.9  -4.74103   TTTCCAATGTAAAAA           GCCCCGCAA CAGG TTGCGGGGC            TTTAATCCGTTACCG 100 54
HRR29_RS20365 NONE
        cgtA 4241874 .. 4241890 - -13.7   -5.7946   GCTGGAATAAAAAAA              GCCCCCA TAA TGGGGGC              TCTCGACAGATATTA 100 38
        greA 4237964 .. 4237978 - -12.8   -4.4009   CTTGAGTTGATAAAA               GGCCGC TAT GCGGCC               TTTTTCTTTTCTTTA 100 72
        rlmE 4236754 .. 4236768 -  -2.8  -3.47345   AACCTCATATTACAA               CTGTGT TAA AAACAG               CGTCAGGATACTCTA  47 83
        ftsH 4234734 .. 4234753 - -11.4  -5.08367   AACAGAAATGAAAAA            CCCCGGAG CAAG CTCCAGGG             TTTGAGGTACAGACA 100 61
        folP NONE
        glmM 4232472 .. 4232487 -  -8.2  -4.65263   ATTGCTTAAAACAAA              GGCGAC AAAA GCCGCC               TTTTTATACATTTAG  84 50
        secG NONE
HRR29_RS20305 4231829 .. 4231844 -    -9  -5.60864   TACAGACGAAAAAAA              GACGTC TTTC GACGTC               TTTCTTCTGGAATAT 100 41
HRR29_RS20295 4229816 .. 4229831 - -10.4  -5.60689   TCAGATAACAAAAAA              CCCCGA TAAA TCGGGG               CTTTAGATAACTGAA 100 152
        rimP 4229305 .. 4229323 -    -3  -3.07487   CCAGACTGTTAAAAG             TGGGGAAC CAG GTTCGCCT             TCTGGATATTACTCA  43 0
        nusA NONE
        infB 4224988 .. 4225002 - -11.4  -5.36441   TCTCCAGACAAAAAA               GGGGCT AAA AGCCCC               TTTTAAAATTATTGC 100 78
        rbfA NONE
        truB NONE
        rpsO 4223150 .. 4223165 - -11.8  -5.00616   GTCTGGTTGAAAAAA              GGGGCC ATCA GGCCCC               CTTTTCTGAAACTCG 100 47
         pnp 4220775 .. 4220795 - -18.3  -2.52623   CCTGCCTGATAATAG            GCCCTCCGC AAA GCGGAGGGC            AAATGGCAACTTACT 100 36
        nlpI 4219752 .. 4219777 -  -6.8  -3.99775   ATTGACGAACAACAA         CGCCCTCACC AGTAAA GGTGATGGCA          ATCAAAAGATTACGG  68 61
        yrbN NONE
HRR29_RS20245 4217690 .. 4217712 - -13.5   -5.9003   AAAGGAATAAAAAAA           GCCCCGATA GCGTG TATCGGGGC           TGTATATTTTACTTT 100 59
         mtr 4215967 .. 4215982 -  -5.4  -2.77523   TGTGCATTAACATCA              TTGCCG CCGA CAGCAA               TCGCGACGCGGAATT  47 402
HRR29_RS20220 NONE
HRR29_RS20215 4212043 .. 4212068 -  -3.3  -3.89881   ACGAAGCGCCAGAAA         GAG-CGCCTC GTGACCG GAGACGGCTC         CTTTGAGGCGCTGCG  55 52
HRR29_RS20205 4211230 .. 4211242 -  -4.7  -4.62783   TATCGATCTGAAAAA                CGCGG GGG CCGAG                TTTTACGATCAGGAG  72 113
HRR29_RS20195 NONE
HRR29_RS20190 4208920 .. 4208937 - -11.3  -6.25578   ATCAAATAAAAAAAA             TCCCCTC GCTT GAGGGGA              TTTTTTTGTAGGCCC 100 69
        rsmI 4204264 .. 4204290 - -10.8  -2.78508   CACCCGGCAAAACAG         GCGGCAGGGG CTTACTC CCCCTGCTGC         TCCAGCGCATGCTTG  72 10
        garL NONE
        garR NONE
        rnpB 4200031 .. 4200046 - -11.8  -4.98531   CCCGGAAAGCAAAAA              CCCCGC CGAA GCGGGG               TTTTTTAAGAAGTTG 100 36
        tdcA NONE
        tdcB NONE
        tdcC NONE
        tdcD NONE
        pflB 4192443 .. 4192463 -  -9.7  -5.41143   TAGCGGGCAAAAAAA            TGCCCCC AGGGTGA GGGGGCA            TGAGACCTGAATGTC 100 42
HRR29_RS20115 4191530 .. 4191541 -    -3  -3.48276   TCCGCTGGTACAGAA                GTTA GATT TAAC                 GGGCGATAAGCAGCA  49 402
HRR29_RS20105 4190087 .. 4190112 - -11.1  -5.60993   CGGCGCATAAAAAAA         GCCCGGT-GGCG CTT CGCTTACCGGGC         CTACCAATTAAGATT 100 41
        uxaC NONE
HRR29_RS20040 4179304 .. 4179323 - -13.6  -4.43012   AGGCTAACAGCAAAA            CGGCAACC CTGA GGTTGCCG             TTTTTAGTGTTTGTC 100 90
        rlmG 4173735 .. 4173751 - -12.3  -4.67641   AGGGTAAAAGCAAAA              CGGCAAC CCA GTTGCCG              TTTTTAGCGTTTGCT 100 97
        lsrA NONE
        lsrC NONE
HRR29_RS19985 NONE
        lsrB NONE
        lsrF NONE
        lsrG 4162920 .. 4162946 - -10.1  -2.76696   GCTGGCTTGAACAAC        GCCGGGT-GGCG CTAG CGCTTACCCGGC         CTACAAAACCTTTAT  69 49
HRR29_RS19955 4160320 .. 4160342 -  -7.7  -4.25104   GCTGCTGGAGCAAAA          CCTGC-CCGC CCAG GCGGAGCAGA           AAGGCGACATGCTGC  74 405
HRR29_RS19945 4157255 .. 4157282 - -12.8  -5.69262   TCAGAAAAATAAAAA        GCCGTTTATTCC CTAC GGTATAAACGGC         TTTTTTGGAACATTA 100 46
HRR29_RS19940 4155268 .. 4155284 -  -6.5  -4.57569   TCAGCTGCGCAAAAA              CCCGC AGATGAA GCGGG              CGCTGGATAACTTCA  78 147
HRR29_RS19930 4153933 .. 4153957 -  -5.5  -3.99324   GCTCAGCAGGAGAAA          GCGCTGCACGA GGT CCGCGCCTCGC          TCGAACATCAGGTGA  64 70
HRR29_RS19915 4151361 .. 4151374 -  -3.8  -2.64155   TTCTCCTTAAATTCA               GGCA AAAGGA TGCC                CGGCGGGTTTACGCC  43 59
HRR29_RS19910 NONE
HRR29_RS19905 NONE
HRR29_RS19900 4148609 .. 4148628 -    -8  -2.82635   ACCTCCACCACGAGA            TACTGTAT AAAC ATACAGTA             GCACGTATTCATAAA  59 97
HRR29_RS19895 4148070 .. 4148086 -  -4.4  -3.17146   CGCGGGCACAACAGA             TCGTCCG CGAG CGG-CGA              AGCGTGGTTCAACGG  49 89
HRR29_RS19890 NONE
HRR29_RS19885 NONE
HRR29_RS19880 NONE
HRR29_RS19875 NONE
HRR29_RS19870 4145975 .. 4145995 - -11.2  -3.77808   TTCATGAGAAGAGAA            TGCCGTTC AGGAG GAACGGCA            GCAACGAGACGGGGT  86 107
HRR29_RS19865 NONE
HRR29_RS19860 NONE
HRR29_RS19855 NONE
HRR29_RS19850 NONE
HRR29_RS19845 NONE
HRR29_RS19840 4141761 .. 4141806 - -11.3  -4.51196   GCTAAATGCAGAAAA TATCAGGTGCTACTGATGATT ATTG ATCCATCAAAAGCACCCGATA TTGAATGACCTATAC  95 35
HRR29_RS19825 NONE
HRR29_RS19820 NONE
HRR29_RS19815 4138737 .. 4138757 - -15.4  -2.59526   CAGAAAGTTAACTCA            CCGGCCGG TAATC CCGGCCGG            TTAAAGGGTTACAGG  90 34
HRR29_RS19810 4138400 .. 4138413 -  -3.1  -2.72263   ACATTTTCGGGAAAT               TTCAG CGAG CCGAA                GCCGGTGACAAAAAA  41 13
HRR29_RS19805 NONE
HRR29_RS19800 NONE
HRR29_RS19795 NONE
HRR29_RS19790 NONE
HRR29_RS19785 4134029 .. 4134046 - -11.3  -3.26433   GAATCATATGATTAA             GCCACTC AATT GAGTGGC              TTTTTTATTGATTTT  77 61
         mug 4133211 .. 4133226 - -10.4  -4.70659   CCTGACAGTGAAAAA              GCTCCC TTCG GGGAGC               TTTTTTTTTGTTTAT  93 92
        tsaD 4127829 .. 4127849 - -16.9  -3.22475   TGTAGGGCCATAATA            CCCTCTCCC TGT GGGAGAGGG            TTAGGGTGAGGGATT 100 39
HRR29_RS19705 4120575 .. 4120599 - -11.4  -2.73067   GGTAACGACACATCA          CTTCGGTGGG TTCAC CCCGCCGAAG          GGTTCTTACAAATCG  73 31
        folB 4117841 .. 4117861 -  -8.2  -5.82281   AAAGATATAAAAAAA            CGGTCGCC CCAAC GGCTACCG            TGAAAGATACAGCTT 100 81
        bacA 4116954 .. 4116986 -  -9.2  -4.42238   GGACTGGAAGGAAAA     GCATTGCCCTCAGCC GAAA GACTGAGGGCCAT-C      GGTCAGAAGAAGACC  86 28
HRR29_RS19670 NONE
        glnE NONE
        hldE 4109155 .. 4109170 - -11.8  -5.65177   AGAGGGAGAAAAAAA              CGGGCC AGCT GGCCCG               TTTTTTTTACTGACT 100 32
        ribB 4107746 .. 4107763 - -14.1  -5.41746   AATCGGGTAAAAAAA             CGCCGGG ATAT CCCGGCG              TTTTTATTTTCAGCT 100 35
        ygiD 4105952 .. 4105970 - -14.6    -4.323   TGCAAACACTGAAAA             CGGCAACC TGA GGTTGCCG             TTTTGCTTTTATTAC 100 37
        nudF NONE
HRR29_RS19615 NONE
        cpdA 4100282 .. 4100293 -  -2.2  -3.22777   GCGTAGACATCAATA                GCCT TCTG AAGC                 GGTATCCGGGCGGAA  43 8
        yqiA NONE
        parE 4097700 .. 4097726 - -10.1  -5.08824   TTTTGATGTAAAAAA        GCCCGGT-GGCG CTAA CGCTTACCGGGC         CTACGAACCATTCCC 100 73
HRR29_RS19590 NONE
HRR29_RS19585 NONE
HRR29_RS19580 NONE
HRR29_RS19575 NONE
HRR29_RS19570 4090451 .. 4090485 - -10.7  -2.51313   AGAGGGAGAACAGAT    CCAGGCCCGGTGAGCG TCAG CGCT-ACCGGGCTTTG     TTTTTAGGTGCTTTT  70 29
HRR29_RS19545 4086812 .. 4086829 - -14.1  -5.38958   AGTCACAAAGAAAAA             GGGCCGC ACAG GCGGCCC              TTTTCGGGTTATTTG 100 34
        parC 4084429 .. 4084450 - -12.3  -2.80071   AAATTTTATTGAAAC           TCCCCCTCC GGGC AGAGGGGGA            TATCACGACATTACT  79 36
        plsC NONE
        ftsP 4082061 .. 4082082 - -14.5  -4.36914   CTGGCGGGCATAAAA           CATTCCCGG CGAA CCGGGAATG            ACAGGATTATGGCGC 100 32
HRR29_RS19510 NONE
HRR29_RS19505 NONE
HRR29_RS19500 NONE
HRR29_RS19495 4072245 .. 4072265 - -10.3  -3.53224   GAGGTGTCTGTTAAA            CGCGTGGCG ATT CACCTCGCG            TCCTTCCGTTCAGTA  79 46
        ltrA 4069212 .. 4069245 -  -8.9  -3.29471   TGCGGAGTAGAGTAA     GAGGCAGGG-CGTAGT CGG ACTATTTCCCTGCCTC     TCCTCCCCGAACCGG  68 73
HRR29_RS19475 4066890 .. 4066908 -  -6.7  -3.33261   GGCCAACGCCCATAA            TGC-GGGC GGTT GCCCGGCA             TCCAACGCCATTCAT  59 386
HRR29_RS19445 4059111 .. 4059122 -  -7.2  -3.02263   ACAGGTTCCTCAACA                GGCC GGTG GGCC                 GTTAGTATCATCAAT  57 95
HRR29_RS19440 4058570 .. 4058591 -  -8.7  -2.87931   CGCATCGCGCAGATA           GAAGCCGAC CTGA ACCGGCTTC            AGACAGAAAGCGATA  62 86
HRR29_RS19375 4045861 .. 4045875 -  -5.6  -5.28983   GTGAAAACAGAAAAA               CGTGGG AAG CCTACG               ATCCAGTCAGCCTCA  88 464
HRR29_RS19335 4037526 .. 4037557 -    -8   -5.8187   CAGGCAATAAAAAAA      CTCCCAAAGACCAC CGCT GTGGTCTTCAGGTA       TAGGATTTAAAGAAC 100 45
HRR29_RS19330 4036539 .. 4036563 -  -9.2  -2.89742   CGCAATCTTCAGATA          GCCGCCGACG TGGTG CGTCGCCAGC          TCTTTGATGTAGCGC  65 505
HRR29_RS19310 4032488 .. 4032520 -  -7.8  -3.53091   ATCCCCTTTGTGAAA      CACCATGAAGATCA GGTGA TGACCTTCCTGATG      GTGCTGCCGATGTTC  62 151
        exbB NONE
        exbD 4029175 .. 4029190 -  -8.2  -5.65177   ACAGGCATAAAAAAA              GCCGGC TTTC GCCAGC               TTCTTTATCACTTCG 100 33
HRR29_RS19275 4027634 .. 4027663 -  -3.5  -4.64861   TGTTTGCAAAAGAAA       CCAGCGCC-CAG TATATCT CAACGGCGCTGG       CTGTTTGCAATAACT  67 55
HRR29_RS19270 4026721 .. 4026733 -  -4.1  -4.97158   CCACATTAAACAAAA                GATCC CGA GAATC                GTCAGCATGACGAAA  76 415
HRR29_RS19255 4024504 .. 4024520 -  -6.5  -3.57263   ATCGTCATGCTGAAA              CGCCATT GGA AAAGGCG              GTAAGAGACATGCCT  61 63
HRR29_RS19230 4020356 .. 4020379 - -11.6  -3.14211   ACGTGCCCTTACCAA          GGCCCCGACC TGAC GGCCGGGGCA           ATCACTTATTTCTGA  79 31
HRR29_RS19225 NONE
HRR29_RS19220 NONE
HRR29_RS19215 NONE
HRR29_RS19210 4016488 .. 4016498 -  -3.2  -3.08133   TACGCATGTATCCAA                 CCTA AAA CAGG                 CAGGCGGCAATTTTT  43 118
         gss 4014443 .. 4014457 -  -5.6  -4.23723   GAACAGTAGCGAAAA               GCCCCC GCA GGAGAC               GCTGCGGGTTGAGGG  69 182
HRR29_RS19180 4006993 .. 4007009 - -10.9  -2.62616   TCAGTCGGTAGAGCA              GGGGATT GAA AATCCCC              GTGTCCTTGGTTCGA  66 59
HRR29_RS19165 4003617 .. 4003652 -  -6.7  -4.45544   CGGGATTAAGCAAAA    CCACCACCCGGCGCT ATCTGG AGCACTGCGTGGAGG     CGGGTTTTCTGACGG  74 211
HRR29_RS19150 NONE
HRR29_RS19145 NONE
        citC 3997805 .. 3997815 -  -4.6  -3.05463   ATTCCTGGTAGTTAA                 GCGA CTT CCGC                 ACTCGCACGGTAATG  47 11
        citD NONE
        citE NONE
        citF NONE
        citX NONE
        citG 3993645 .. 3993668 -  -8.9  -3.50853   GCTGTTCAAGTACAA          GCA-CGTGCG CGAGC CGCACGGTGC          GCAGCCGATCGCGCA  72 124
        trmB NONE
HRR29_RS19085 3988452 .. 3988471 -   -15  -3.31232   TCCCTCAGACAAAAT            GGGCCAGC TAAT GCTGGCCC             CTTACTGCTTTATTA 100 38
HRR29_RS19080 3987314 .. 3987331 -  -9.9  -4.18018   CGTTCTTATGCAAAA             CAGCTCA GACG TGAGCTG              ACAAAAGAAGAAAGA  80 405
HRR29_RS19045 3982904 .. 3982925 -  -8.7  -2.71144   CAGGGCTTTTAACCA           CAGGGGC CTACAGCC GCCCCTG            CGCCCGTCTCTCCGC  61 11
HRR29_RS19005 NONE
HRR29_RS19000 NONE
HRR29_RS18995 3972041 .. 3972063 -  -9.2  -2.71393   AAGACAAATATGAAT           TTTCTCCCGC CAG ACGGGAAAAA           TGGTGACAATTATGT  64 66
        yqgB 3963783 .. 3963798 -    -4  -3.81349   AGGCGAAAAAGAAGA              CATGTC GTCA GACATA               GCGAACCTCAACTCT  56 33
        speA 3961661 .. 3961695 - -13.6  -5.92337   ACAGATGAAAAAAAA     TCCCCTCCGCGTCG TTAAACC CGACGAGGAAGGGA     TTGATTCGTAAATCG 100 151
        speB 3960652 .. 3960667 -    -9   -5.5074   GAAGGCAATAAAAAA              CCTCTC AATA GAGAGG               TTTTTTTTTCACGCA 100 50
         tkt 3956045 .. 3956064 - -12.2  -4.69549   AAGGTAAAAGCAAAA            CGGTAACC GAGA GGTTACCG             TTTTTTAGTGTATGC 100 99
         epd NONE
         pgk 3953536 .. 3953555 -  -9.2  -3.04894   AAGCGCGCTGAAAAT            TGGGCAGG TTTC CCTGCCCT             TGAATGGCTTACTTC  67 34
        fbaA 3952350 .. 3952367 - -14.1  -5.77632   AAAAGCATAAAAAAA             GGCCCGC ATTT GCGGGCC              TTCTGATGCTGTTAG 100 50
        mscS 3951312 .. 3951338 - -15.9  -4.97405   ACTTATAAAAATAAA        GCCCGGT-GGCG CTAG CGCCTACCGGGC         CTGCGGGAGAAGTTA 100 38
        argO 3950503 .. 3950521 -    -3  -3.02511   TCCATGTTGCGAAGA             GTGCCC ATTAACA GGGCGC             ATGCCAGCAAGCTTA  43 74
HRR29_RS18895 3949332 .. 3949348 -  -6.5  -3.55444   GCGCTACTTCCCAAA              CGGCG TCACCCG CGCCG              CGCTGCTGAAAGCTC  58 415
        rpiA 3947941 .. 3947956 -  -3.2  -4.62904   AAAGAGGCGTAAAAA              CGTGAC ACAA GTCACC               GAATTTAGCTTTTCA  65 78
        serA 3946471 .. 3946488 -  -9.9  -5.63645   TGAAAACATAAAAAA             CGGTAAC TATC GTTACCG              TTTTGCATTTATCTC 100 47
HRR29_RS18860 NONE
        pepP 3943130 .. 3943145 -  -6.1  -2.70298   GCCGCCAACGATAAT              CACGC TCATGC GCGTG               CCGCTGCCATCAGCG  53 15
        ubiH NONE
        ubiI 3940697 .. 3940722 - -11.2   -3.1634   TTTCAAACGAGGGAA         TTTCCCCGGC GCAGAG GCCGGGAAAA          TAAAGTGTGACGGGG  77 48
        gcvT 3939254 .. 3939278 -    -2  -2.58667   CCTGATAAAAATGAT         TAGGCGACCGG CTTA CCGG-CGCGAA          CAAAAATCGGTTTGG  39 0
        gcvH 3938750 .. 3938776 -  -6.4  -3.19192   GTGCAGTGAATTTAA         GTTCCCTCTCCC TCT GGGAGAGGGTTA         GGGTGAGGGGAAGAT  57 89
        gcvP 3935792 .. 3935819 -  -9.9   -5.4505   TCTCCCAATAAAAAA       GCCGGGT--GGCG GCTT CGCCTTACCCGGC        CTTTATGACTACACC 100 48
HRR29_RS18825 3934746 .. 3934760 -  -7.8   -3.8448   GAAGAGATGATCAAA               GCCGTG ACG CACGAC               GGCGTGGATCTGATG  68 293
HRR29_RS18810 3932168 .. 3932181 -  -5.3  -5.07652   TCCGGGAAAACAAAA               GATGA TTAT TCATC                GCATAACTATGCTAA  78 155
HRR29_RS18805 3931108 .. 3931124 -  -2.1  -4.60487   TATCAGCTTTAAAAA              GGGCTGT TAT ACCGGCC              AGGAGATGGTGGCGC  66 387
        sdhE NONE
HRR29_RS18790 3929140 .. 3929151 -  -2.2  -3.35197   GGTGAGATACAGGAA                GACT GGGA AGCC                 ATCTGGGATCAACTC  46 353
        xerD NONE
        dsbC NONE
        recJ 3925423 .. 3925449 -  -5.2  -3.30903   AAAATGCGGTGATAA        GAGCG-GGATT GTACCG AATCCACGCCC         TTTTTTATAGAGATT  54 48
        prfB NONE
        lysS 3922722 .. 3922735 -  -9.5   -5.4505   CGGCGCAATAAAAAA               GCCCC TTTC GGGGC                TTTTTTTACATCTTA 100 46
HRR29_RS18750 3921181 .. 3921198 -  -3.3  -2.76263   TCTACCATTGAACTA             CGC-CCGC TTT GAGGTGCG             TATGGCATTATAGAC  44 95
HRR29_RS18745 3920987 .. 3920998 -    -3  -3.31461   GATGGAGTCTGATAA                TTCA GTGC TGAA                 TATGGGGCTCGCGCG  47 140
HRR29_RS18740 3919039 .. 3919049 -  -4.6  -3.32769   CTCTTAAAGCATGAA                 GGCA ATG CGCC                 AGTTAACGCTCACAT  51 3
HRR29_RS18735 NONE
HRR29_RS18730 3904780 .. 3904793 -  -2.3  -4.13767   GGGGCCAGGGGAAAA               TCAGC TTGA GCTGC                CGCTGCTCACCAGCA  59 395
HRR29_RS18700 NONE
HRR29_RS18695 3897753 .. 3897770 - -12.7  -5.80817   GGTAAGATAAAAAAA             CACCGGC CATC GCCGGTG              TTATTTACGCCCGAA 100 30
HRR29_RS18685 3896284 .. 3896303 -  -4.2  -2.93708   GGGCGTGAAAAAGAG            CCGCGC CTTTAACC GCGCGA             TTTCCATTATGGGGG  44 290
HRR29_RS18670 3893729 .. 3893742 -  -2.4  -3.91164   AATTGTTTAAAAATA               GTGA GTTTAA TCAC                AAGGATCAGCGCGCA  53 31
HRR29_RS18665 3892442 .. 3892455 -  -8.1  -6.09133   GACGCGAAAAAAAAA               CCTCC CGGA GGAGG                TCATTTTTAATGAGA 100 46
        kduI NONE
        kduD 3890540 .. 3890559 - -11.4  -5.75945   ATTGCGCAAAAAAAA            CCTCCGCC CACA GGCAGAGG             TTCTTAATACAGGTG 100 44
HRR29_RS18650 3888828 .. 3888841 -  -3.8  -3.16177   ACGGCATAGAGTGAA               GCCT TCGAAC AGGC                AAAACAATCACACGC  47 33
        fepE 3887471 .. 3887488 - -12.7  -5.75478   AAGTACATAAAAAAA             GGCGCTG TATT CAGCGCC              TTTTTAAACTGCAGA 100 43
HRR29_RS18640 3886474 .. 3886484 -  -6.8  -3.53761   GAATGGTGGTGGAAA                 CGCA CAG TGCG                 GCTTCGATTTGCGCG  60 266
        lysA 3884030 .. 3884053 -    -3  -3.08032   GGCGCTGGAAAAGCA          CGGCATTCGT CTGG ACGAGCGTCG           GATAAAGTACGGCGA  43 392
HRR29_RS18620 3882407 .. 3882435 -  -5.1  -3.01924   GAGCGGCGGTGAACA        GGCCATGACCGAG CTG CTGGGTCGCGGAC        GAAATTTCACGGCGG  47 297
         aas NONE
        lplT 3877678 .. 3877695 - -11.3  -4.78029   GTAATAAAAGCAAAA             CGGCAAC GCAG GTTGCCG              TTTTTAGGGTTTGCT 100 90
        rppH NONE
        ptsP 3871979 .. 3872001 -  -6.2  -3.56568   GGAGAGGCAGAAAGA           TGATTAGCGG CCG CCGCGGATCA           GGCCGCCCATACCGC  61 6
         lgt NONE
        thyA 3870072 .. 3870091 - -11.4  -5.82388   AAAGGCGAAAAAAAA            CCGGCGCT AAAG AGCACCGG             TTGTGTCACGCTTTA 100 46
HRR29_RS18565 3869477 .. 3869487 -  -3.2   -2.5655   TTCATCGACATGAAC                 CTCC CGC AGAG                 ACCTTACACATCCTG  40 1
HRR29_RS18560 NONE
HRR29_RS18555 NONE
HRR29_RS18550 3868193 .. 3868208 -  -3.2  -3.05343   GGTAGACCCTTAACA              TAGACG CTCC CGACTA               CTGGCTAACCGGGCA  43 23
        recC 3864716 .. 3864734 -  -5.2  -3.15407   TACATCATTAATACA             TTGCGTGC TGG ACACGCCA             ACATCTCTTTATTGG  52 110
        ptrA NONE
        recB NONE
        recD 3856406 .. 3856440 -  -8.5   -3.7511   CCTGGGATAATACAA    CGCTTGCCGGGT-CGCG CTG CGCGTACCCGGCCTG-G    ATATCTGGCGTTGTT  72 40
HRR29_RS18520 3853520 .. 3853533 -  -8.1  -4.67697   TCTGAAAACAATAAA               CACCC TCAA GGGTG                TTTTTTTGTATCTGT  84 80
        mltA 3851819 .. 3851838 - -13.6  -4.70659   CCTCAGATGTAAAAA            GGGTGAGG TTTT CCTCACCC             TGAACAGTAATCCGT 100 62
        tcdA 3850498 .. 3850534 -  -3.6  -3.79071   CGTACAATACCCAAA   GCGATGTCGACGCGCTGG TTG CC-GC-CGTTGACCGCGC   CCTTGAAATACTGGT  54 484
HRR29_RS18480 3848890 .. 3848909 - -10.7  -2.57423   ATAGTGATTAATGTA            GCACCGC CAATTT GCGGTGC             TTTTTTTTCGCCTGC  70 47
        gcvA NONE
HRR29_RS18470 NONE
        rlmM 3845891 .. 3845902 -  -2.2  -3.02144   GTATTGGGCCGAAGA                GC-GC CGC GCAGC                TGCTGAAGGATTTTC  41 259
         syd 3838992 .. 3839014 -  -3.5  -3.86897   GCGATCTCTCACAAA          CGTTGTAAGA GATC TCTCACA-CG           CGCTATAGCATCATG  56 43
HRR29_RS18430 NONE
        truC NONE
HRR29_RS18420 3836660 .. 3836674 -  -2.1  -3.10537   GACCGGAAAAGTATA               TGAAG GAGTG CCTCA               TCACCTCACCGTGCA  42 176
        gudP NONE
HRR29_RS18410 NONE
        gudD 3832452 .. 3832471 -  -9.3  -4.23054   ATACACCACGTAAAA            GACCGCT TGTGGG AGCGGTC             CCAATGCGTTTATCG  83 35
HRR29_RS18400 3831176 .. 3831201 - -11.1  -4.55118   GAAGCTGAGATAAAA         GCCCGGT-GGCG CTA CGCTTACCGGGC         CTATGATTGCGGGTG  95 88
        rlmD NONE
        relA 3824723 .. 3824756 -  -5.9  -5.52384   TTTCCATTAAAAAAA     CAAGCCGGGTGGCGGC AAA GCCTT-ACCCGGCCTA     CAGAAGAGTGTGTTT  88 39
        mazG 3823888 .. 3823903 -  -4.7  -4.24562   AAAAAATCACACAAA              TTGCG CTTGAT CGCAA               AATCTCGTTAGAGAT  67 33
        pyrG 3822010 .. 3822034 - -18.7  -4.08164   AAAACTCCAGACAAA          CAACGCGTACC AAA GGTACGCGTTG          CCGTTCTAACTTTTT 100 41
         eno 3820626 .. 3820645 - -12.2  -5.85178   AATAGCCAAAAAAAA            TGCCAGTC ATTC GACTGGCA             TTTTCATGTTAAGGC 100 49
HRR29_RS18355 NONE
HRR29_RS18350 3815852 .. 3815881 -  -7.1  -3.74872   AGTCATCTCAGTAAA       GGGGATAAACGAT AAGT ATCGCAGATCCCC        GCCGGATGGTCATGC  66 35
        queE 3815142 .. 3815158 - -11.5  -5.52384   CGGGGAGTAAAAAAA              GCCCGGC TAA ACCGGGC              TTTTTTTTAGGCAAT 100 32
        cysJ NONE
        cysI 3810963 .. 3810974 -  -5.8  -3.87815   GGTTACTCCCAGAAA                TCCC TTGC GGGA                 TCGAGCACCGGGCGA  63 1
        cysH 3809789 .. 3809819 -    -9  -3.21099   TTTTGCCACGACCAA       TCCGGGCGGGAA TTCTGCT TTCCCACGCGGA       ACAGGCTGCTGCAAC  63 406
        cobA NONE
        cysD NONE
        cysN NONE
        cysC 3804478 .. 3804508 -  -4.7  -3.01924   GATCGTTCGGGAAGA      CAGCTCCCGA-ACG ATAC CGCCTCAGGATCTG       ATAATATCGTCCCGT  50 16
HRR29_RS18295 3804016 .. 3804034 -  -3.1  -3.09273   CCGGGGTAACAGAGA            TGC-CGCA ACAT CGCGGGCA             AATGTACCACATTTT  43 105
        ftsB NONE
        ispD NONE
        ispF NONE
        truD NONE
        surE NONE
HRR29_RS18265 3799946 .. 3799977 -  -6.6  -2.76404   GTGACTTAAAATTTA      CCGTGATGGCACGAA TCT TTCGCGCCA-CACCA      TACGCTGAATTTGCC  54 67
        nlpD 3798721 .. 3798733 -  -3.3  -3.35996   TATTCTGACTCATAA                GGTGG CTC CTACC                CGTGATCCCTGAACG  49 70
        rpoS 3797687 .. 3797706 -   -15  -5.46706   AGCGCAAAAGAAAAA            GGCCCGTC TCAC GACGGGCC             TTTTTTGACGAAAGG 100 45
HRR29_RS18240 3794595 .. 3794612 -  -5.6  -3.32844   TCGTTTACCTGACAA             GATCGT TCGCAT ACGATC              ACACGAATGGCTAAA  56 514
HRR29_RS18230 NONE
HRR29_RS18225 NONE
HRR29_RS18220 3792012 .. 3792036 -    -2  -3.66178   TGCGTGAACTGGAAA         GCCTGTCACCG AATG CGGCGGC-GAC          GCAGATTGATGGTAC  51 262
HRR29_RS18205 3788551 .. 3788567 -  -4.3  -3.14132   CGGTTTGCGGAGGAA              TCCACGC TTG GCGCGCA              CTACGGCGCACTCGC  45 215
        hycA 3778109 .. 3778137 -  -3.9   -4.7254   ATTTTTGACGAAAAA       CTGTCTTGTCGA CACTTC TCGACACG-CAG        GAGTCAGGCCACATT  67 29
HRR29_RS18145 NONE
        hycC 3775641 .. 3775654 -  -2.3  -3.17486   AAGAATTGCCAGTAA               CAGAC TCAT GTCAG                GCTCCTCGTGAAATC  43 22
HRR29_RS18135 3774729 .. 3774747 -  -3.7  -2.71144   TACTCTCTTTAATCA             CGCCACC AGCAA GGAGACG             AACGCTAAAAATGCA  43 4
        hycE NONE
HRR29_RS18125 NONE
HRR29_RS18120 NONE
HRR29_RS18115 NONE
        hycI 3770382 .. 3770394 -  -4.7  -4.07568   GTTCCTGGTGGAAAA                CGGCC TCG GGGCG                AAAGACGTTATTGAT  62 428
HRR29_RS18095 3766521 .. 3766562 -    -6  -2.96329   TGAATTTAACAATCA CGATGGTGCTGTCATCGTCA CTTA TGACGATGACAG--CTGTCG ACATCAGCGGTGCGG  52 29
        hydN NONE
        hypF NONE
HRR29_RS18080 3762525 .. 3762547 - -10.7  -3.76837   CACACAAGCGAAGAA           TGCGGAATA TATTT TATTCCGCA           AAAGACCTATATTTT  83 118
        norR 3757831 .. 3757851 -  -6.7  -4.20696   TGATGAAGCGCAAAA            TCACCGCCG CAC CGGTGGTGG            ATGACGCCGGCAGGC  69 87
        mltB 3751505 .. 3751519 -  -5.8   -3.8766   TGACACCACATTAAA               TGTTAT AAC ATAACA               ATAATGAAAGACGGT  63 159
HRR29_RS18020 NONE
HRR29_RS18015 NONE
HRR29_RS18010 3748950 .. 3748969 - -11.4  -5.24129   GGGCTTCAGAAAAAA            GCCGGTAC GGAC GCACCGGC             GGTGGAAAGGTTATT 100 36
        pncC 3748333 .. 3748352 -    -8  -2.70932   CTGTTGGTGCAATTA            TACTGTAT GGTC ATACAGTA             TCAAGTGTTTTGTAG  58 26
        recA 3747167 .. 3747184 - -10.5  -4.84529   TCAGAAATGCAAAAA             GGGCCGC ATCA GCAGCCC              TTCATTTTTAAACGA 100 46
        recX 3746570 .. 3746580 -  -6.8   -2.8806   AAACCGTTGGACAGA                 CCAG CTA CTGG                 AAAAAGTGGGAATAA  56 81
        alaS 3743830 .. 3743857 - -16.4  -3.71487   TAGCACAGTGAACAA        GACGCCATAACG TTAC CGCTATGGCGTC         TGCTTGTGCTTTGTA 100 45
        csrA 3743235 .. 3743255 -  -4.7  -3.86015   TATCGTTTGCACAAA            TCACACGCA ATT CGCATGTAA            AAGCCGCAAAGAGGG  61 220
HRR29_RS17980 NONE
HRR29_RS17975 3742932 .. 3742942 -  -5.4  -3.29558   CAATATGAAGTAATA                 GATG GTG CATC                 CGGGAGGATTCGAAC  54 17
HRR29_RS17970 NONE
HRR29_RS17965 3742661 .. 3742671 -  -3.2  -3.93256   CAGACCTTGAAACAA                 CAGC GTG GCTA                 TTATCTCGGAGAATA  54 41
HRR29_RS17960 3742315 .. 3742325 -  -5.4  -3.49835   GGGAATAACAGAAGA                 GATG GTG CATC                 CGGGAGGATTACTCG  58 149
        yqaB NONE
HRR29_RS17950 NONE
        gshA 3739472 .. 3739500 -  -3.9  -3.48772   AACTCTTCTACAGAA        TGCACGTCT GAGTATATGAA AGACGCGCA        TTTGTTATCATCATC  51 97
        luxS 3738859 .. 3738900 -  -8.7  -2.72511   GTCATGGGGTTAAAC CACCCTCACCCTACCCTCTC CCG GAGGGAG-AGGGAAAAGGTG CACTAGATGTGCAGT  61 28
HRR29_RS17935 3737706 .. 3737716 -  -6.8  -2.85987   ACGGAAAAGAGATGA                 CGCA GAA TGCG                 CTGTGGCAGCTGTTC  51 393
HRR29_RS17865 3722735 .. 3722748 -  -8.1  -2.53876   CGTGATGTGAAGCGA               CTGGC GCAC GCCAG                TCGCGGATTTACTGT  61 34
        stpA 3721340 .. 3721371 - -11.5  -3.01712   GGCGTCTGCTGAACA      GTCAGCCGGGCGG CGTGTT CCGCCCGGCTCAT       CCGTTAGATCAGAAA  75 29
HRR29_RS17835 3719777 .. 3719787 -  -4.6  -3.73647   CCGACGGATTAACAA                 CCCG CGT CAGG                 ACTCGCGCATGCTGC  56 147
HRR29_RS17825 3718027 .. 3718050 -   -16  -3.51232   TGCTTTTTAAATTAA          CGGCCAGCCG GACG CGGCTGACCG           AATGCGTTATGCGCC 100 32
        fdrA NONE
HRR29_RS17815 NONE
HRR29_RS17810 NONE
HRR29_RS17805 NONE
HRR29_RS17800 3711006 .. 3711016 -  -5.4  -3.96148   GCCTCCCAGTATAAA                 GCAT TGC ATGC                 GGCCTGATGCCTTCA  63 76
HRR29_RS17795 3709968 .. 3709982 -  -5.6  -3.31792   CGATTACGCTGATAA               GCGGCA TCG TGGCGC               ACGAGCCAATTGCCC  51 276
HRR29_RS17785 NONE
HRR29_RS17780 3707364 .. 3707379 -  -7.6  -3.93009   GAACAGAAATTCAAA              CATGGA GATC TCCATG               GACGATTGCGGCCCG  71 97
HRR29_RS17775 3706790 .. 3706836 -  -9.5  -2.57244   GGATCCATGAAGTCA CGCGAGCACTCAGCG-GCGAT GCTGCAG ATCGCACGCTG-GCACACGCG ACAGAATAACCTTAC  67 37
HRR29_RS17765 3705264 .. 3705294 -  -7.4  -4.07687   ACCTCCTGTGTAAAA       TGGCCGACGATCGC GGC GTGTTCCCCGGCCA       GTGGGCTCTCTCCGG  68 328
HRR29_RS17725 3688041 .. 3688053 -  -3.3  -4.46212   CCCTCCACGAGAAAA                TCAGG ATT CCGGA                TGTCCGTTGATGGCG  65 13
HRR29_RS17720 NONE
HRR29_RS17715 3686580 .. 3686597 -  -6.9  -3.53224   GAGGCTGTCGTGAAA             GACCCGC ACGC GCAGGCC              CTCACGCTGGATGCC  60 143
HRR29_RS17690 NONE
HRR29_RS17685 3682762 .. 3682784 -  -5.6  -4.22948   AAAACGCATGCAAAA           CCATGCAC CTTATGC ATGCATGG           CTTTTATACGTAAAA  69 72
HRR29_RS17665 NONE
HRR29_RS17660 3676573 .. 3676588 - -11.8  -5.59534   AAGTAGAAGAAAAAA              CCCGGC TAAT GCCGGG               TCTGTTTGGGGGTTA 100 38
HRR29_RS17615 NONE
HRR29_RS17610 3671169 .. 3671179 -  -6.8  -2.71011   ACCTTTCCGTAATCA                 CGCA TTT TGCG                 CCTCCGAGACCTTCG  55 12
HRR29_RS17605 NONE
HRR29_RS17600 NONE
HRR29_RS17595 NONE
HRR29_RS17590 3666920 .. 3666935 -  -8.2   -5.0925   CCGGAAAAGCAAAAA              CCCCGC CGAG GCAGGG               TTTCAATGATTGATT  91 141
HRR29_RS17580 NONE
HRR29_RS17575 3665898 .. 3665924 -  -2.2  -3.09175   AAGGCTGAGGTAATA         GCCATTATACGA TGC CCGCATTATGGT         GCCGACTACCGGAAT  42 22
HRR29_RS17570 3665628 .. 3665643 - -10.4  -5.04601   CTTAGAAACGAAAAA              CCTCGC CGAA GCGAGG               TTATTTAAATTAGAG 100 224
HRR29_RS17565 NONE
HRR29_RS17560 NONE
HRR29_RS17555 NONE
HRR29_RS17550 3663576 .. 3663613 - -12.1  -3.31144   TGCTTATGTTTATAA   CCATTATCAAGCCCACC AGCA GGTGAGCTTTGTAATGG    CTGCCACTACCCGAA  82 391
HRR29_RS17545 3662672 .. 3662685 -  -9.5  -5.14965   ATTGCCATTAAAAAA               CCGCC TTCA GGCGG                TTAGATATAGCGATT 100 40
HRR29_RS17540 NONE
HRR29_RS17535 NONE
HRR29_RS17530 3661384 .. 3661420 -  -7.3  -5.08824   TCCTCACTCAAAAAA    CATTATCGAAGCCCCTC AGT GAAGGGCTCCTGTAATA    TCAGCTTTAAAGCGG  85 32
HRR29_RS17525 3660336 .. 3660352 -  -5.1  -3.02511   TGGATCGCCCTAATA              TTTCCAC TAT GTGGATA              ACTCAGTCCAAATCC  50 28
HRR29_RS17520 NONE
HRR29_RS17515 NONE
HRR29_RS17510 NONE
HRR29_RS17505 3655388 .. 3655405 - -10.5  -5.07486   TACGGGCAACAAAAA             GGCCGCC CGGA GGCGACC              TTGTGAGATGGGAAA 100 238
HRR29_RS17500 NONE
HRR29_RS17495 NONE
HRR29_RS17490 3652586 .. 3652601 - -11.8  -5.60993   TGCTCCATAAAAAAA              GGCGGG TTTC CCCGCC               TGTTTCAGGTTAAGA 100 35
HRR29_RS17485 NONE
HRR29_RS17480 NONE
HRR29_RS17475 NONE
HRR29_RS17470 NONE
HRR29_RS17465 3650330 .. 3650347 -  -2.7  -2.59431   CTGCGGCATAATTTA             GTCTC CGAAAAAT GAGAC              GGGCGCATCTTGCAG  41 5
HRR29_RS17460 NONE
HRR29_RS17455 NONE
HRR29_RS17450 3648210 .. 3648233 -  -9.6   -2.6563   GCGCGTAATAAGGGA          TTAACCCGGC GTCA ACCGGGTCAA           GGAGATAAGACAGCC  68 62
HRR29_RS17445 NONE
HRR29_RS17440 NONE
HRR29_RS17435 NONE
HRR29_RS17430 NONE
HRR29_RS17425 NONE
HRR29_RS17420 3643332 .. 3643347 - -11.8  -5.04601   TCCAGAAAGCAAAAA              CCCGCC GGGT GGCGGG               TTAGTTGAATGTTTT 100 26
HRR29_RS17415 NONE
HRR29_RS17410 NONE
HRR29_RS17405 NONE
HRR29_RS17400 NONE
HRR29_RS17395 NONE
HRR29_RS17390 3638778 .. 3638793 - -11.8  -4.11322   CCAACGAGAAAAATA              GGGGCG CTTG CGCCCC               ATGTTTTTATTCTGG  95 32
HRR29_RS17365 NONE
HRR29_RS17360 3635149 .. 3635165 - -12.3  -4.84529   TCAGAAATGCAAAAA              GGTGCTC ATT GAGCACC              TTTTTTGTTTTTCTT 100 90
        grpE 3631205 .. 3631221 -  -5.1  -3.29381   GGACAATATGATTAA              GCAGG TGAAAGT CCTGC              CCGTAAAACCCCTGC  49 112
         ffh 3627538 .. 3627571 - -13.1  -4.63218   CTTGTGTGAATAAAA     CAACCGGGCCCCATC GAGG AACGGAGCCCGGGTG      TCATATTAAAAGCCC 100 85
        rpsP NONE
        rimM NONE
        trmD NONE
        rplS 3625470 .. 3625491 - -11.5  -5.64274   GCAGGGATAAAAAAA           GGGCCAGCC TTTC GGCCAGCCC            TTTCTAACAGGATGT 100 55
HRR29_RS17300 3624997 .. 3625008 -  -3.6  -4.81249   TTTTAAAGGGAAAAA                GCAG ACTG CCGC                 GGCGGCGCGCGGGTA  71 1
HRR29_RS17295 3623495 .. 3623510 -  -3.2  -4.62069   GGGTTAGGTCAAAAA              TACCCG GTTG CGAGCA               ACAGTACTCCGCAAG  69 90
        aroF 3619521 .. 3619531 -  -4.6  -2.53213   TAACCTCTTAAGCCA                 GACG CGT CGCC                 AGCTGGCCTTTCAAA  44 7
        tyrA 3618344 .. 3618358 - -11.4  -6.09196   CCCAAAATAAAAAAA               GCCAGC ATT GCTGGC               TTTCAGTATATACAT 100 48
HRR29_RS17260 3617256 .. 3617271 -  -5.4  -3.50853   GCTGCGTAACCACAA              CCTGAT CATG ACCAGG               CTGGAATCACGCCCA  55 202
        rluD NONE
        pgeF 3612805 .. 3612816 -  -3.6  -5.09259   TATGTGAAAAGAAAA                CGGC ACGT ACCG                 GATCGTCTTGATTCT  74 46
        clpB 3610093 .. 3610122 - -15.9  -3.53012   CGCCTGGTTTTTAAA       CAAAAACGAGCCG CAAG CAGCTCGTTTTTG        CGTTTTGTGACTTAC 100 37
HRR29_RS17220 NONE
HRR29_RS17215 3607934 .. 3607969 -    -7  -4.00532   TTTTTAAAGAGCAAA    TATCTCAAACGTCACC CGGA GATGAGTTTTGAGATA     TGACGGCAGGTGACT  68 61
HRR29_RS17210 NONE
         rrf 3604685 .. 3604706 - -13.7  -5.42514   GCACAAACCAAAAAA           CCCCGCACC TTAC GGTACGGGG            TTCTTCTAATTGATG 100 40
HRR29_RS17200 3603112 .. 3603133 -  -3.6  -4.27443   GGAGCATCAAAAGAA           CTGTGGGA TAGCCG CCCCGCAG            GGAGCGGCTGGAGCT  65 108
HRR29_RS17170 3596154 .. 3596169 -  -6.2  -4.96848   CCGGGCATACAAAAA              GCATAA TGGC TTATGC               CTTGTTCTGACGCCA  83 20
        grcA 3594684 .. 3594701 -  -9.8  -5.63374   TGAAGAGTAAAAAAA             GCCGGG GAAATT CCCGGC              TTTTTTATTCCCCCC 100 52
HRR29_RS17150 3592250 .. 3592262 -  -3.3  -3.78775   GTGCGCACCACGAAA                CGCCT GGA ACGCG                CCTTGCGCCGCATCA  52 243
        rpoE NONE
        rseA NONE
        rseB NONE
        rseC 3587759 .. 3587777 - -12.4   -4.3179   GTAAAAAATGATAAA             GCCCGATG GAT CACCGGGC             CTCAGAAGAGAGCGT  95 17
        lepA 3585757 .. 3585769 -  -3.4  -3.62572   CAGGATCAGGGCAAA                CATG TTCGC CATG                CCAACTCCTTAGGGT  51 40
        lepB 3584751 .. 3584776 - -14.8  -2.71101   CGTGGAAATAATTCA         CGTAGCCGCT AATTAA AGCGGCTACG          CGTTCATTTATTGAG  86 43
         rnc NONE
         era NONE
        recO NONE
        pdxJ NONE
HRR29_RS17085 3580923 .. 3580951 -  -9.5    -3.214   TCTATGAGATTAACA        GCGACCGCTGCAC GGA ATGCATCGGCCAC        TATGAAACGCCGACC  66 151
        murQ NONE
HRR29_RS17065 NONE
        aphA NONE
        tadA 3575839 .. 3575849 -  -6.8  -3.21218   ATTTCGTATCAGGAA                 TCCC ACT GGGA                 TACCCAGGCCACGTC  59 511
        purL 3570692 .. 3570718 -  -8.7  -5.76237   GACACAAACAAAAAA        GCCCGGTCGAGC TTTC GCTT-ACCGGGC         CTGGAAGGGGGTGGG 100 49
        qseE NONE
        qseG NONE
        glrR NONE
        glnB 3566241 .. 3566258 - -12.7   -4.8622   TGCTGTAATGAAAAA             GCCCCTC GTTC GAGGGGC              TTTTTTTTCGCCGGG 100 80
HRR29_RS17015 3563443 .. 3563458 - -11.8  -5.66684   TAAGCCATAAAAAAA              GGCCGC AAGC GCGGCC               TTTTTTATTTCTGCC 100 52
HRR29_RS17005 3561434 .. 3561445 -  -5.8  -4.72986   GATCTGCACGAAAAA                CAGG TGAT CCTG                 CTGACGGGAGACGAT  79 269
HRR29_RS16995 NONE
HRR29_RS16990 3558591 .. 3558601 -  -6.8  -3.53444   CCACGCGTTGTTAAA                 GCCA TGC TGGC                 CAACATGCGTGATGA  60 106
        trmJ 3556924 .. 3556945 -  -5.7  -2.59431   TTCCTTCATAACCCA           GGTGCGGCC TGAT GCCCTCACC            CCAGCCCTCTCCCAC  49 61
        iscR 3556164 .. 3556190 -  -4.4  -3.53444   TCATTGCTCTTTAAA         CTCCGTACATCG CTT CAATGCAAGGAA         TCAGGCAACCGGCTG  53 105
        iscS NONE
        iscU NONE
        iscA 3554023 .. 3554050 -   -12  -4.30719   GCCTGTTAGAAGAAA        CCCCACGCGCAGC AGA GCCACG-GTGGGG        TTATACCTTCTTACT  95 165
        hscB NONE
        hscA NONE
         fdx NONE
        iscX 3551041 .. 3551062 - -15.1  -3.85704   TTAGCAACTAGCAAA           CGGGCCGCC TGAA GGCAGCCCG            TTATGTTATTTATTC 100 35
        pepB 3549678 .. 3549708 -   -11  -3.78022   GGGAGAGGGAGCAAA       CCATCCCCTCTCCC CTT GGGAGAGGGTTAGG       GTGAGGGCAATAAAG  86 42
        sseB 3548813 .. 3548831 - -14.6  -3.33696   TGCTGCTGGAAGCAA             CGGGGTGA TAT TCACCCCG             CCGTAATCAGATGAT  93 32
HRR29_RS16905 NONE
        pbpC 3536531 .. 3536546 -    -4  -2.86271   CGCGGATTATAATGA              GCAATA GCGC CATTGC               CTATGGATTCAGGTA  46 101
         ndk 3535916 .. 3535955 -   -18  -3.03243   ATGGAGGGTTGAATA  GAAACGCCCCGGA-AAGCA GTC TGCTCGTCCGGGGCGTTGC  ATTGTACAAAGTCTG 100 104
   trmG/rlmN 3534658 .. 3534690 -  -7.6  -2.77999   TATTCAGTAAGACCA      GGCTTCACGGCGCA GATAA TGCGCCGTGAGTGC      ATAATAATCAAACAG  59 33
        rodZ NONE
        ispG 3532195 .. 3532207 -  -4.8  -6.06529   TATATACAAAAAAAA                CCCA AAGAA TGGG                TTCAATCATACATGG 100 64
        hisS NONE
HRR29_RS16870 NONE
        bamB 3529018 .. 3529041 - -13.9  -4.31329   TTAAAAATGTCAAAA          CGGCTCCTG AGTGAA CAGGAGCCG           TTTAGTATACTACAA 100 52
         der 3527444 .. 3527462 - -13.1  -5.75945   ATTTGGCAAAAAAAA             GCCCGCG ATAAA CGCGGGC             TTTCGTGAGGCAGGT 100 46
HRR29_RS16855 3525618 .. 3525633 -  -2.4   -3.4678   ACCGGGACAGGATAA              CTGCCC CGGT AGGCTG               AACATTATCAGGCTT  45 33
HRR29_RS16850 3524951 .. 3524974 -  -5.8   -4.0641   GCGCACGGAGAGAAA          CGCTCCGGCA GCGA CGCTGGTGCG           GCCATTAAACAAGCC  64 412
        guaB 3520906 .. 3520927 - -18.7  -3.71991   TGAAACAAAAACAGA           GCGCCCGGC AGAA GCCGGGCGC            GGAAACTTATCAGGA 100 35
        guaA 3519227 .. 3519257 - -12.8  -4.79223   TCATATTATTAAAAA       GAACACCAATAGAT AAA ATTTATTGGTGTTC       TTTTATCAAGACAGG 100 60
HRR29_RS16800 NONE
        iolD 3510999 .. 3511012 -  -3.9  -3.86397   GGGGAAAACAAAAAT               GAAAT GAAA ATTTC                GTTACGGCAGGAAAA  56 42
        iolG NONE
HRR29_RS16785 3508731 .. 3508757 -  -2.1  -2.62263   AGGGTTGCGACATCA         GTCTGCTCCTC CTCAT GATGAGCCGCC         AGAGGCGGCTCGGGA  39 45
HRR29_RS16780 NONE
HRR29_RS16775 NONE
HRR29_RS16770 NONE
        iolC NONE
        iolE NONE
        iolB 3501019 .. 3501036 -  -9.1  -2.53581   GATATGCCCAACGCA             CCAGCGC GGCG GCGCTGA              GTATCTTACTGTTAG  57 335
HRR29_RS16745 3499508 .. 3499522 -  -8.5  -4.67353   CGATCCATGCAAAAA               CCGCC GAGGT GGCGG               CAAGCCACGTGTCGA  86 110
HRR29_RS16725 3495611 .. 3495629 -  -2.3  -4.70515   CAGAGGGAAAATAAA             GACAGGC ATCCA ACCTGAC             GTACGCGCCGCCCGG  63 502
HRR29_RS16715 3493304 .. 3493319 -    -6  -3.29576   AAATTGAAGAAGAGA              GCGCCG ACGT CGCCGC               GTAACGGCTCAGGCG  54 34
HRR29_RS16690 3486036 .. 3486053 -  -8.4  -5.76633   TTAGAGACAAAAAAA             CCGGAG GCGAGA CTCCGG              CTTGGGTGCGGGGTT 100 113
         upp 3485251 .. 3485269 - -10.3  -5.81412   TTTATTCAAAAAAAA             GCCGACT ATCAA AGTCGGC             TTATTTATCGTTATT 100 44
        uraA 3483887 .. 3483906 - -11.4  -3.59946   CCTGCAAGGAGAGAA            CCGGGCGA TCCC TCGCCCGA             CTTTTCGATCAATGT  82 34
         hda 3482857 .. 3482883 -  -4.4  -5.00616   GCGCGGCTGAAAAAA         CAGACCGACA GCGCCAT CGCCGATCTG         TGCAACACGCCGACC  80 259
HRR29_RS16655 3478081 .. 3478105 -  -6.3  -2.67386   AAAATTTATCACAAC          CCTCGCTGCTC CAA GAGCCGCGATA          CCCTGAGCCTGCTGA  48 324
HRR29_RS16640 3475199 .. 3475216 - -11.3  -4.53036   TGATAAACAGCAAAA             CGGCAAC CCAG GTTGCCG              TTTTTAATGTTTTCC  95 92
        dapA NONE
        bamC 3472047 .. 3472065 - -11.7  -5.50723   GCACTAAAATAAAAA             GGGCTGG ATTCA CCAGCCC             TCGTATTTATTTGCT 100 32
        purC 3471211 .. 3471238 -   -15   -3.1382   GAAACAAGGGTAAGA        CGCCAAAGGATG GGAA CATCCTTTGGCA         AGTGAGGGAGTTAGT 100 36
HRR29_RS16610 NONE
HRR29_RS16605 3468325 .. 3468336 -  -4.4  -5.10497   AAGTCATTGAAAAAA                TTGC CATT GCAA                 AATGTCTTCTTTCAA  79 2
        ypfH 3467466 .. 3467506 -  -8.3  -3.59279   GACCAGAAGAAGTAA TCCCCTCACCCC-CAG CCCCTCTCCC CAGAGGGGCGAGGGGA  GCCATGTTCCCTCCC  69 63
        ypfM 3465217 .. 3465235 -  -8.8  -5.96894   ATTGAAATAAAAAAA             GGCGGC TTTATCG GCCGCC             TTTTTATTGTGTGAT 100 83
        aegA NONE
        nudK 3457446 .. 3457458 -  -2.6  -3.02947   GATTTATCAGATATA                CCCG AAAAA CAGG                CTATATCCGTTCGAA  43 26
HRR29_RS16555 3455924 .. 3455936 -  -4.7  -3.93148   AGCAGGTCAAAAACA                TCGCC CGC GGCGG                CTACATCCTGAAGGA  59 403
        maeB 3450690 .. 3450713 -   -11  -4.45544   TGCTACGAACCAAAA          GAAGGCAGCC CGGA GGCTGCCTTG           CGTGAGTTTATTCAG  93 94
HRR29_RS16525 NONE
HRR29_RS16520 3447858 .. 3447869 -  -4.4  -2.71712   CCTTTCTTGTTAAAT                CAAC GCTT GTTG                 GAGTGCGACATCGGC  45 54
HRR29_RS16515 3447187 .. 3447204 - -11.3  -3.81557   CTCCTGAAATAAAGA             TGCCACG TCAG CGTGGCA              TTGATGGCGGCTATT  86 80
HRR29_RS16510 3446272 .. 3446285 -  -9.5  -2.82234   AGAAAGGTCATTACA               GCGCC AGCA GGCGC                TCAACGGACGGCGCA  69 7
HRR29_RS16505 NONE
        cysT NONE
        cysW NONE
        cysA 3442195 .. 3442220 -  -6.8  -5.06414   GCTGTCCAATAAAAA         GCCCGGT-GGC GCTTA GCTTACCGGGC         CTACAGACGTCATAT  85 94
        cysM 3441249 .. 3441260 -    -3  -3.66288   TATCCCGGAATAGAA                TCAT CTCC ATGA                 CGCTTAAATCCCCGC  52 29
        pdxK 3440397 .. 3440414 - -12.7  -4.96848   TGCCGCACAGAAAAA             TGGCGCC TTCG GGCGCCA              TTTTTGTTTATGCCG 100 33
        zipA 3434324 .. 3434340 - -10.8  -5.38249   ATCAATGAGAAAAAA              CCCCCG ACAGG CGGGGG              TTGAGGAGGAGTTGA 100 55
        ligA NONE
HRR29_RS16440 3432035 .. 3432061 -  -9.4   -4.2349   GCGCCAGACCGAAAA        GCTGGCGCAGG AAGAGA CCCGCGCC-GC         GAAGGCTTAAGGACG  83 32
HRR29_RS16430 3429829 .. 3429839 -  -6.8  -4.90906   CGACAAGATCAAAAA                 GCTG ACT CAGC                 AGTTAAAAGAGCTGG  87 237
        gltX 3427439 .. 3427456 - -12.7  -5.65177   AGAGGCATAAAAAAA             CGGCAGG TTAA CCTGCCG              TTTTTTATCTGAGGC 100 45
HRR29_RS16385 NONE
HRR29_RS16380 3426237 .. 3426256 - -13.6  -6.08563   AACACATAAAAAAAA            CCCTCGTC TTTC GACGAGGG             TTTACAATTTTGGTG 100 36
HRR29_RS16375 3423837 .. 3423855 -   -16  -5.27938   AGCGTTAAACAAAAA             CCGGGAGC CTG GCTCCCGG             TTTTTTTATGCCCGC 100 31
HRR29_RS16365 3421018 .. 3421033 - -10.4   -4.7629   CCATTAATGCAAAAA              GGAGCC TCCC GGCTCC               TTTTTCTTTTAGAGC 100 34
        ipdC 3417374 .. 3417404 -  -3.9  -3.14132   GTTTGCCGTGATTAA      GCTGGCCGC-GC TGGTGGTG GCTGCAGCCTGC       GGTTTCCGAGGAGGA  45 308
         glk 3415251 .. 3415274 - -12.4  -4.87803   CACCTGTAAAGAAAA          CGCCCTCTCC CGCG GGAGAGGGCT           CTGCATCAGAGGATT 100 31
        alaC 3411149 .. 3411167 - -14.6  -5.47821   ATGCAGTCAAAAAAA             CAGGAGCC ATC GGCTCCTG             TTTTTTTATGTCATG 100 36
HRR29_RS16310 3409367 .. 3409415 - -16.6  -3.25668   AATTGATTGATAACA TGAATAATAAATAAGAATTTTC ACAAA GAAAATTCTTATTTATTATTCG AAGGAAAATAAAATG 100 233
        tssB NONE
        tssC NONE
        tssK NONE
HRR29_RS16290 NONE
HRR29_RS16285 NONE
HRR29_RS16280 3402655 .. 3402678 - -14.6  -5.96219   CATTCAGAAAAAAAA          TGCGGACAGG AAAA CCTGCCCGCA           TCAGGATTACGCCGT 100 32
        tssH NONE
HRR29_RS16270 3399233 .. 3399244 -  -2.2  -3.95073   TTTTATATTCATAAA                CCTC CAAA GAAG                 TATTCGCAGACATTA  53 7
        vgrG NONE
HRR29_RS16260 NONE
HRR29_RS16255 NONE
HRR29_RS16250 3393435 .. 3393447 -  -4.1  -3.53444   CTACCGTCTTTTAAA                GATGA TCT TCACC                ATGACCCATAAGGAT  53 21
HRR29_RS16245 3392657 .. 3392682 - -10.7  -3.26813   ATGATAGATCATTAA         TAGTTAATGAT GAAC ATCATTAACTA          TTACTATTTACAACG  74 42
HRR29_RS16235 NONE
HRR29_RS16230 NONE
HRR29_RS16225 NONE
        tssA 3385079 .. 3385100 -  -4.3   -4.2349   GTGCTACAGGCAAAA           CGCATCCGC AGCA GCGAACGCC            CGTCAGGCTCAGTGA  64 505
        tssG NONE
        tssJ NONE
        tssE NONE
HRR29_RS16195 3381240 .. 3381259 -  -2.1  -2.71001   GATGTGTAAAGCAAT            TTTGCGT GTAGAA ACGCAAT             GACTAATAAAGGAAT  39 52
HRR29_RS16190 3379438 .. 3379452 -  -5.8  -2.80113   CACGATTGCAGGATA               TTCAAA ATA TTTGAA               TATAATTTTTTTGCC  50 424
HRR29_RS16185 NONE
HRR29_RS16180 NONE
HRR29_RS16175 3377185 .. 3377203 - -14.6  -3.28712   TGTTGCTGTGCATAA             GACCCGCT TTT AGCGGGTC             TTTTTGTTTCTATAG  90 43
HRR29_RS16170 NONE
HRR29_RS16165 NONE
HRR29_RS16160 NONE
HRR29_RS16155 3373069 .. 3373111 -  -7.2  -3.83744   TGAGCCAAATAAAGA GGTAACGCGTGGTAACACA CTGATT TTTGTTACCACT-GTTACC AGTTGATATTTCTGA  68 134
HRR29_RS16150 3372284 .. 3372296 -    -2   -4.2349   TTCTTAGACCTAAAA                TACA AAAAG TGTA                ATGTTGACAAAATCG  58 390
HRR29_RS16145 NONE
HRR29_RS16140 NONE
        mlaA 3366283 .. 3366299 - -12.3  -5.26875   GCTGGAATCAAAAAA              GGTGAGC ATT GCTCACC              TTTTTTATTTACTCC 100 34
HRR29_RS16110 3364239 .. 3364258 - -12.2  -4.81523   AAGGAAAAAGCAAAA            CGGTAACC CACT GGTTACCG             TTTTTAGTGTTTGCA 100 90
        fadI NONE
        fadJ 3360487 .. 3360499 -  -6.9   -4.4727   CTAAGAGGTAGAAAA                CCCGA TGG CCGGG                CATTGTGCCTGATCC  77 153
        sixA 3359891 .. 3359917 - -14.4  -3.48276   GTTGCCCTGACAGAA         TGGCGGGAAGCA CAT TGCACCCCGCCA         TATCGCACGTCACGT  95 40
        prmB 3358237 .. 3358250 -  -9.5  -3.61178   TTGAGCGATGTGAAA               CGGGC CGAA GCCCG                CTGGATTAATCTTTA  75 31
        aroC NONE
        mepA NONE
HRR29_RS16070 NONE
HRR29_RS16065 3354937 .. 3354953 -  -3.7  -2.60496   TCCTCTGTTAAAGAT              CTTCC GGCCAAG GGAAG              CATTCCGCCGTGATA  43 1
HRR29_RS16060 3354542 .. 3354565 -    -8  -2.77167   GAAGAAGGTTAAGTA          GGGTGCGGTC TGGT GCCCTCACCC           TAACCCTCTCCCACA  59 100
        fabB 3351130 .. 3351147 - -12.7  -5.66684   CAATGCATAAAAAAA             GGGAGCC TTAT GGCTCCC              TTCCGGAATCAAACG 100 47
HRR29_RS16045 3349624 .. 3349636 -  -4.7  -3.32343   TGGAGACGTTCAGAA                CGCTC TCT GCGCG                TCCGGGGTTGATGTT  49 171
        pdxB 3347401 .. 3347430 - -15.1  -5.72622   TCCAGAAATAAAAAA       GCGTCCCTGCCGGA GTA TCCGACAGGGA-GC       ATTAAGAAGACATTA 100 38
HRR29_RS16030 3346365 .. 3346382 -  -7.7  -2.62616   CCACGTCTGACATCA             GTACAGG TACT CCTGCAC              CAGTTTTTCAGCGAT  58 5
        truA NONE
HRR29_RS16020 3344839 .. 3344851 -  -3.3  -5.24531   ACTTTGGATAAAAAA                GTGGT CGA ACCGC                CAGTGTGCATTTACT  77 36
        accD 3343768 .. 3343791 - -13.8  -4.63479   GATTAGAAAGCAAAA          GGGCAGCGCC AACC GGCCCTGCCC           TTTTCAGTTATCAGG 100 36
        folC NONE
        dedD 3341662 .. 3341685 -  -8.9  -5.63517   CGCGTAAATAAAAAA          GGCGCTGAA AAAATG TTCAACGCC           ACGGTCCATTTGACG 100 127
        cvpA NONE
        purF 3339492 .. 3339503 -  -7.2  -2.53263   GGGAGTTGCAAGTGA                GGGC ATTC GCCC                 TCACCTGCCGGAGCA  55 41
HRR29_RS15990 3338807 .. 3338825 - -13.2  -3.28791   ATCGCCGTTGCATAA             TTGCCCTG AAA CAGGGCAA             CGTCTCTTTTCATGC  83 60
        argT 3337704 .. 3337742 - -14.7   -2.9661   TAAGTATGCACAAAG   CGATCCAATACGGTGCA ACAAA TGCACCGCATTGGGTCA   ACCGCTCCCGCAACG  88 69
        hisJ NONE
        hisQ NONE
HRR29_RS15970 NONE
        hisP 3334046 .. 3334057 -  -7.2  -2.82516   CTCTGGAGGATGATA                CGCC GCTG GGCG                 ATATTGGCCTGCAAA  51 475
        yfcF 3331017 .. 3331030 -  -6.7  -2.78463   ACTGCCCCCATCATA               CCTGA AGCG TCAGG                GCTTATCAGCCCGCG  54 31
        yfcE NONE
        yfcD 3329469 .. 3329486 -  -8.3  -3.14881   GAACCGTGTGATTAA             CGCGGCG ATGC CGCCGAG              CTTCTCGACCGGCGC  57 357
HRR29_RS15920 3328124 .. 3328136 -  -5.5  -2.78298   GAATTAAATCAGAAG                CGGTC AAT AACCG                TTTTAATTTCCTCCA  50 6
HRR29_RS15915 NONE
HRR29_RS15910 NONE
HRR29_RS15905 NONE
HRR29_RS15900 3324513 .. 3324539 - -10.1  -4.67904   CAGTAATGTTAAAAA        GCCCGGT-GGCG CCAG CGCTTACCGGGC         AACAAAAAGGCGACC  93 64
HRR29_RS15885 3320235 .. 3320261 -  -7.3  -5.78622   GCACTTTAAAAAAAA         GACACGGTAAC TGATT GTTACTGTGCC         TTCTTTTCGTCGTCG  93 54
HRR29_RS15880 NONE
HRR29_RS15875 3319002 .. 3319019 -  -8.4  -5.24129   TTGTGCCATAAAAAA             GCCCCA GCAATG TGGGGC              TATATCATGTGATTA 100 38
HRR29_RS15870 3316940 .. 3316952 -  -4.7  -3.60048   GCGTCTGGAAAAAAC                GCTGG AAT CCCGC                CGCAGCGAAGAGATG  53 197
        lrhA 3313183 .. 3313212 - -12.3  -5.41143   TATTGCGTAAAAAAA       GCCACTGCATGTGA AAA TCACACG-AGTGGC       TGTTTTTTACACTTA 100 71
        nuoA NONE
        nuoB NONE
        nuoC NONE
        nuoE NONE
        nuoF NONE
        nuoG NONE
        nuoH NONE
        nuoI NONE
        nuoJ NONE
        nuoK 3302588 .. 3302603 -  -2.5  -3.18199   TAATGGTTAAGGCAA              GCATG TTCATC CACGC               AACTCACTTACTGAA  43 16
        nuoL 3300664 .. 3300682 -    -3  -2.80966   AGGGAATTAATATTA             GCCAGGGT AGT AACATGGC             GATTTACATTCCTTT  42 99
        nuoM NONE
        nuoN 3297656 .. 3297671 -    -9  -5.32699   GCAAACATTAAAAAA              GGCAAC TTTC GTTGCC               TTTTTGCTTTCACCT 100 40
HRR29_RS15775 3294939 .. 3294958 -  -2.8  -2.66634   CATGTTAGTACACCA            GTCCGCTA ACTA TAGCCAAC             GAGATGCCATTACGC  41 35
        elaB 3294544 .. 3294560 -  -6.5  -4.07568   CTCTCCCTGTTAAAA              CCTCGTA TTA TACGGGG              TACTGGCCATAAATA  69 74
        menF 3293206 .. 3293219 -  -2.3  -3.26947   GAATTTTGATATGAA               TCGGG ATTG CGCGA                ATCTGTATTAATCCC  43 33
        menD 3291473 .. 3291492 -  -9.2  -2.83164   CCAGTGAGGATCACA            GCTGGCTC ACCT GCGCCAGC             AGGCTTTGCAGGGCC  65 1
        menH NONE
        menB NONE
        menC 3288885 .. 3288898 -  -5.2  -3.88601   TAAAACTCATAACAA               CGGC TCCAGC GCCG                CGACGTTGAGGCACG  61 3
        menE 3287469 .. 3287481 -  -4.8  -3.14132   TCTCCCGGGGATCAA                GCAC TCTGC GTGC                GGCAGGTCAGTAGAT  52 62
HRR29_RS15735 3286824 .. 3286848 - -11.3  -4.24786   TGGAGAAGAGAGAAA          CTGGCGCGACA GAA CGCCGCGCCGG          AGTGATTAGAAGCCT  91 31
HRR29_RS15730 3285531 .. 3285555 - -20.7  -3.01712   GCGCTGGGCTGAACA          CGGCCGGGGCG AAA CGCCCCGGCCA          AGGTTTTACTCCACG 100 31
        glpT NONE
        glpQ 3278675 .. 3278700 - -11.9  -3.69434   TCAACGAAGGGGAAA         TTTTGCCCTGC TGCT GCCGGGCAAAA          GGCGATATAGAGATC  93 155
        gyrA 3271105 .. 3271131 - -15.2  -4.07568   TCTGCTTGTGCAAAA         GAAAAGGGCCGG AAT CCGGCCCTTTTT         TGCATCAGGAGACAT 100 40
        rcsC 3268146 .. 3268159 -  -9.5  -4.86862   GTGAAAAAACGAAAA               GGCCC TTAC GGGCC                TTTTTTATATTCTGG 100 30
HRR29_RS15660 3262840 .. 3262855 - -11.8  -5.37345   GGGAAGCACAAAAAA              GGGGCC ATCA GGCCCC               TTACGTCACACGGTG 100 47
        apbE NONE
         ada NONE
        alkB NONE
HRR29_RS15640 3258148 .. 3258160 -  -4.7  -5.28176   GGGATGGAGAAAAAA                GCGGC ATC GCGGC                CACGATTTATCCCCT  84 72
        mgtE 3256295 .. 3256315 -  -3.9  -3.90318   CGATGATCGGACAAA            CCATCGTCA ACG TGGAGATGG            GGAAAGGTCGAAGCC  57 332
         mqo 3253502 .. 3253519 -  -9.9  -4.99972   AGAAAACACTAAAAA             CGGTAAC GGAT GTTACCG              TTTTGCTTTTATCTT 100 39
HRR29_RS15615 3252385 .. 3252402 - -11.3  -5.69473   GAGACCATAAAAAAA             GCCATCC GGCA GGATGGC              TTAGTTATCGCAGGT 100 47
HRR29_RS15610 3251077 .. 3251092 - -10.4  -4.30885   AAAACATATTGAAAA              CCAGCC TGAT GGCTGG               TTTTTTTATTTCGCC  90 31
        yejK 3247733 .. 3247748 - -11.8  -5.42862   ACACGTCGAAAAAAA              CCCCGC TTCT GCGGGG               TTTTTTTATGGCTGT 100 40
        rsuA NONE
HRR29_RS15570 3243315 .. 3243328 -  -9.5   -5.5112   TGCATCAACAAAAAA               GGCCC TGTC GGGCC                TTCTCTGTATTTTAG 100 37
HRR29_RS15565 3242679 .. 3242691 -  -6.2  -2.52676   TAGCGCGCCAACGCA                GCGC TACAC GCGC                CAGCTGTTGTCGGCA  52 50
        uxuA 3229645 .. 3229660 -  -7.5  -5.38398   ACAAAAACACAAAAA              CCGGC TCTCAG GCCGG               TTTTTTATAGGCCCG  95 70
HRR29_RS15505 3228271 .. 3228294 -  -4.5  -4.77036   TTTGATCATGAAAAA          TCCCCCAGA GAATTG TCTGGGGAC           ATTTTAGAATGGTTC  73 328
HRR29_RS15495 3226448 .. 3226461 -  -3.1  -4.38219   AGAAGAGAAAAAAGA               CGATA CAAA TACCG                CTGGCACCATTGATA  64 488
        relB NONE
        relE 3224701 .. 3224712 -  -5.8  -3.36515   GTCCATGCGCAAAGA                GCCA AAAG TGGC                 AACGGGCGTGCTGGA  56 409
        fruB NONE
        fruK NONE
        fruA 3219928 .. 3219951 - -13.2  -5.60993   GGCGGCATAAAAAAA          GCCGGG-TGCA TAA TGCAACCCGGC          TTTTTTGTGGTTTAT 100 44
HRR29_RS15440 3216996 .. 3217010 -  -2.1  -3.71649   CCGGGAAACGTTAAA              TGGCGC AGTA GCGC-A               GAAAACGCTGCAGAG  50 6
HRR29_RS15435 3215303 .. 3215320 - -12.7   -5.7946   GCGGGAATAAAAAAA             CCCGCTC GATT GAGCGGG              TTAAAAGAGAGGAAC 100 46
        cirA 3213106 .. 3213123 - -11.3  -4.97461   AACAAATACTAAAAA             CGGCAAC TTAC GTTGCCG              TTTTGCTTTTACCCT 100 48
HRR29_RS15420 NONE
        folE NONE
HRR29_RS15410 3208807 .. 3208824 -  -5.6  -3.16564   GGGCGACGTCACGAA             TGGTGA TCATAT TCACCA              TCCTTCAAAGGATTG  54 173
        galS 3207714 .. 3207733 -  -9.3  -4.09685   TTTCAGCCCCTAAAA            CGCTGAC ATCATA GTCAGCG             CCTTGTTAAGATACT  79 86
        mglB 3206459 .. 3206478 - -13.6   -4.3739   TATCGCGTTATAAAA            GGGCGCAA CGAA TTGCGCCC             AGTGGAGACAGTACC 100 47
        mglA NONE
        mglC 3203836 .. 3203854 -   -16  -5.26316   GTAGGGCATAAAAAA             GCCCGCTC GAT GAGCGGGC             CGGATAACGCGAGGA 100 45
HRR29_RS15355 3197582 .. 3197597 -    -4  -4.13963   ACCTGTGAAAAAAGA              CGCGCTA TAG TAGC-CG              CTCTCTATATCGCTG  61 30
        dusC 3196468 .. 3196507 - -19.5     -6.13   AGAGGCAAAAAAAAA  CCTAAGCGCTCCACAGC GAAAAT GCTGTGAAACGCTTAGG   TTTTGCCTGTTAACC 100 146
HRR29_RS15345 3194836 .. 3194866 -  -6.9  -6.02919   CCAGAAACAAAAAAA      CCTGACC-TCCGGC AGAT GCCAGAAAATCAGG       TTTTGCCTGCCTAAG 100 139
        bglG 3193905 .. 3193940 -   -14  -6.28401   CAAAAAATAAAAAAA    CCCGAGAACGACCTTC TGAC GAAGGCCGCGCTCAGG     TTTTGCCTGCGTGAT 100 65
        bglF NONE
        ascB 3190281 .. 3190293 -  -5.5  -3.62369   ACTCAAAAAATAAAG                GCGCA CGT TACGC                TCGATATCGTTCATT  58 314
        mdtQ NONE
HRR29_RS15320 3187965 .. 3187993 -  -8.9  -3.53012   CGGCCCTCTCCCAAA        GGGAGAGGG TGTTTTTAGTT CCCTCTCCC        TTTGGGAGAGGGTTA  72 54
HRR29_RS15310 3186571 .. 3186606 - -12.6  -3.09135   ATAATCGTGAACAGA    TGCTGCATTGCTGGCA TTTA CGCCAGCAATGCAGTG     AACTCAGAAGAGACG  80 29
        pbpG 3185433 .. 3185450 -  -9.9  -4.42851   GGAATAAACGCAAAA             CGGTAAC CTGG GTTACCG              TTTTTAGTGTTTTCG  90 94
        bglX 3180483 .. 3180509 - -20.2  -3.18768   TAGCATAACGTAAGA         CGCATCCCCCGG AAG CCGGGGGATGCA         AAGAAGGGAAGGTTA 100 38
HRR29_RS15285 NONE
HRR29_RS15280 NONE
HRR29_RS15275 NONE
HRR29_RS15270 3176253 .. 3176267 -    -7  -2.66435   ACGTGCACGATACCA               CCCGCC TGT GGCTGG               AAGCGTGGATTGCGA  50 383
HRR29_RS15255 NONE
        yehT NONE
HRR29_RS15245 3172493 .. 3172511 - -14.6  -5.72254   TGAAATAACAAAAAA             GCCGGAGA TAA TCTCCGGC             TTTTTTTTGCCCGGC 100 108
        apbC 3169111 .. 3169138 -  -8.5  -3.64822   ATCGGTTGAGTTAAA       GTCGGGT--GGCG GCTT CGCCTTACCCGAC        CTACGTGATGGTGCC  69 92
HRR29_RS15220 NONE
HRR29_RS15215 NONE
HRR29_RS15210 NONE
HRR29_RS15205 3163472 .. 3163494 - -13.4  -3.45909   CTAAGTAATACAACA           CCCCTCTTCC GCC GGGAGAGGGG           TTATTTTTATACGCC  86 32
        thiM NONE
        thiD NONE
HRR29_RS15165 3155212 .. 3155224 -  -4.7  -2.80816   GCTGGAGGGATTACA                GGACG TGA CGGCC                TTTATCGATTTCGGC  44 440
        fbaB 3151101 .. 3151122 - -15.9  -3.05596   GATGCCCTCACCCAA           CCCTCTCCC ACCG GGGAGAGGG            AGATGGAGCCGTCAG  93 37
HRR29_RS15135 3149221 .. 3149231 -  -2.4  -4.12188   GGAGCATCTGGAAAA                 CGGC AAA GGCG                 AGGCGATTGACGTGG  59 318
HRR29_RS15125 3146531 .. 3146552 - -15.9  -2.55061   ATAATGTGAGAATAT           TGCCCCGCA GCAC TGCGGGGCA            GAGACTCCAGACATT  90 53
        alkA 3132587 .. 3132606 -  -2.1  -4.83615   CAGCCCGGATAAAAA            CCTGCAG CGGAGT CTGCAAA             AGCTTCGCCAGGCGG  70 325
         udk NONE
         dcd NONE
        asmA 3125983 .. 3125999 - -12.3  -5.10933   TTAGGTAAAACAAAA              CGGCAAC CCG GTTGCCG              TTTTTAGTGTTTGCT 100 107
HRR29_RS15055 NONE
         wzb NONE
         wzc NONE
        wcaA NONE
        wcaB NONE
        wcaC NONE
        wcaD NONE
        wcaE NONE
        wcaF NONE
         gmd NONE
HRR29_RS15005 3112546 .. 3112562 -  -2.1  -2.96405   CTGACTTAAAAACAT              CGTTACC CCC GGAAGCG              GTGCTGGTTTTCCAG  42 11
HRR29_RS15000 3112072 .. 3112087 -  -8.2  -3.36518   CTAAAATTTTCATAA              GCCCGG CACT CCGGAC               TGACGATCGGCCAGG  67 4
        wcaI NONE
        cpsB 3109401 .. 3109413 -  -5.5   -2.5955   ACCGGGCATAATGCA                GAGTG CTA CACCC                GCCCGTAGCGGTCCT  49 18
        cpsG NONE
        wcaJ NONE
        wzxC NONE
        wcaK NONE
        wcaL NONE
        wcaM NONE
        galF 3099937 .. 3099987 - -17.3  -5.66229   ATTAATAATAAAAAA CGGCAGTCATCATTTTGGCTATAT CTCA ATACA-CCAAAATAATGACCGCCG CTTGTTCAAGACGTT 100 50
        rfbB NONE
        rfbD 3097651 .. 3097666 -  -6.1  -4.04579   TCTATAAATACCAAA              TGCCC ATATAA GGGCA               TTTATCTTCTTAAAT  69 35
        rfbA NONE
        rfbC NONE
HRR29_RS14930 3095772 .. 3095782 -  -2.6  -2.86164   TCTTTAACCATGACA                 TTTA CAA TAAA                 GACAAATATTACTAA  42 41
HRR29_RS14925 NONE
HRR29_RS14920 NONE
HRR29_RS14915 3092284 .. 3092296 -  -2.7   -3.1637   ATATAGCGCTACTAA                TATGA TTC CCATA                TTTTTATAAACTCAT  45 9
HRR29_RS14910 NONE
HRR29_RS14905 NONE
HRR29_RS14900 3089054 .. 3089071 -  -8.5  -3.15544   CTGGATTTTCAGCAA             TATCAGC ATTA GCTGATA              CATTCTTGGTAACTA  65 490
        gndA 3087397 .. 3087415 - -11.7  -5.60993   TTTTGCATAAAAAAA             CCCGGAG ACAAG CTCCGGG             TTTTGATTACAGCAA 100 51
         ugd 3085966 .. 3086024 -    -9  -4.03085   TGAGAAAAATTTAAA CCAGATGTAATCTGACAGATACCTGT ATAAATA ACCGGTAACTGTCAGATCAGGTCTGA GCTAATACAGCTAAA  79 49
        wzzB 3081959 .. 3081975 - -13.7  -6.02919   TCACAAATAAAAAAA              CCGGGGA ATA TCCCCGG              TTTTTTTAATCTGCA 100 43
HRR29_RS14815 NONE
HRR29_RS14810 3072652 .. 3072679 -  -3.5     -6.13   ACATGCAAAAAAAAA        TAACCGACG CCTTTTATAT CGTCGATTA         TTCATTTGGTTGCAG 100 111
        yoeI NONE
HRR29_RS14800 3071035 .. 3071055 - -12.5  -5.61596   AGGGGTATAAAAAAA            GCCGGAGGC GAT GTCTCCGGC            TTTTTTTTGCCCGCT 100 105
        dacD 3068184 .. 3068199 -  -3.2  -2.80113   TATTATGTGAGCAGA              CTCGCA ACCC TGCCAG               TCTGCCCATCAGCGG  42 41
        sbmC 3067562 .. 3067611 -  -7.2  -2.76037   ACGGCAAATCACAAT TGTACTGTGTTTTCAGCCGGGCG GATCG CTCCCGGCTGAAAA-ACCCTTCA TTTAGCAGGCTTAAG  56 36
HRR29_RS14780 NONE
HRR29_RS14775 3065935 .. 3065956 - -14.5  -5.71983   TGAATCATAAAAAAA           GGCTCTCTG TCAC CAGAGAGCC            TTTTTCACTATTCGC 100 46
       emmdR NONE
HRR29_RS14755 3063641 .. 3063659 - -13.2   -5.1417   GCAGAAAAGCAAAAA             GCCTGCTT TAA AAGCAGGC             TTTTCAAATTTGGCT 100 36
        pagP 3057860 .. 3057878 -  -4.4  -3.18199   CAATGCTGAATTTAA             GGAGTCCA TTC TGGCCGCC             ATCAGCAAAACGATG  49 208
HRR29_RS14715 NONE
HRR29_RS14710 3049345 .. 3049374 - -10.1  -5.00616   TCTGCGCTCAAAAAA       GAGAAAGCCCG GACTCAGG CAGGCTTTCTC        AGTTTACGCTATTAC 100 37
        ldtA 3048344 .. 3048360 - -12.3  -4.37198   AAGGTAAATGCAAAA              CGGCAAC CGG GTTGCCG              TTTTTAGTGTTTGCA  95 93
         nac 3046946 .. 3046956 -  -5.4  -3.46107   AAATAATAAAAACCA                 GCAT CTT ATGC                 TTTTATGGAATATCA  56 38
         cbl 3045883 .. 3045914 -  -9.4  -2.54896   CGTTCAGCTAAGCGA      TGAGCCCGGTCAGCG CAG CGCT-ACCGGGCAAA      CCAGTACCTAAATCT  64 33
HRR29_RS14680 NONE
HRR29_RS14675 NONE
HRR29_RS14670 3042859 .. 3042879 -    -4  -3.57144   TCGGCGATTTGCAAA            TCGGTG TTTACGTCG CACCGA            GCTATGTGGAACGCC  51 514
HRR29_RS14660 3041770 .. 3041804 -  -4.9  -4.14397   ATCGGATAAACGAAA    TGCGAG-GCGGCTTCCG GAT CGGA-GCTGCGCCCGCT    GTATTGTCTTTTGAC  64 62
HRR29_RS14655 NONE
HRR29_RS14650 3040915 .. 3040933 - -13.2  -4.24404   AGCCAAATTTGAAAA             GCCTGCTT TTG AAGCAGGC             TTTTTGCTTTTCTGC  95 51
HRR29_RS14640 NONE
HRR29_RS14635 NONE
HRR29_RS14630 3035620 .. 3035641 -  -7.3  -3.81848   AATACTGTAGAAGAA           CTAGCCCAT TTAT ATGGGCTAT            CCACGAGTGATATGG  66 504
HRR29_RS14595 3026294 .. 3026309 -  -6.1  -3.21225   TTAAAAACCATGTAA              CCGCA TTCCCT TGCGG               TTGTCCGGCTCCGGC  57 42
HRR29_RS14580 3023578 .. 3023610 -  -7.9  -3.39955   AAATGCAAAATTCAA     GCTGGTATACCGGGT TATGG ACCCGG-ATA-CAGC     GGAATGGGTGGCGAG  64 348
HRR29_RS14480 NONE
HRR29_RS14475 NONE
HRR29_RS14470 3002451 .. 3002463 -  -4.9  -4.20768   ACCGGCAATAAATAA                TGAAA CCT TTTCA                CGGGGAGATACTCTG  67 75
        cyoA NONE
        cyoB NONE
        cyoC NONE
        cyoD 2998540 .. 2998550 -  -2.4   -4.3587   CAGGAATAACAGAAA                 GGCC AAA GCCC                 TGTTCACATCATCTG  58 29
HRR29_RS14445 2997959 .. 2997988 - -15.2  -3.45023   TCAGGATTACGATAA       CAACAGCATCTG ACAACG CAGATGCTGTTG        TTATTTTTCTGTATC 100 144
HRR29_RS14405 2986908 .. 2986939 -  -8.1  -3.08032   TCTGCGGCAAAATGA      GGAGTCTGGCGG CCATTCCTC CCGCCAGA-TCC      ATTAAGGCTTTTCAG  63 27
HRR29_RS14395 NONE
HRR29_RS14390 NONE
HRR29_RS14385 2982852 .. 2982865 -  -3.7  -5.40474   ATGGTGGTAAAAAAA               GGGGC GGAT GTCCC                TGATATCAGCAGCGA  87 427
HRR29_RS14360 2974270 .. 2974297 - -10.6  -4.07568   CGCCGCCGGGGAAAA        TGCCGGATAGCGC TGG GCG-TATCCGGCC        TACAACACAGGGGTC  87 41
HRR29_RS14355 2972744 .. 2972763 -  -6.3  -3.44527   TATGCAGCAGGATAA            CGGGCTG GATCTG CTGCCCG             TTATTCGCGCATCCG  56 518
HRR29_RS14340 2969880 .. 2969895 - -11.8  -4.07678   CCCCAAAATACCAAA              GGCCGC AATT GCGGCC               TTTTTACTATCTGAA  95 45
HRR29_RS14330 NONE
HRR29_RS14325 NONE
HRR29_RS14320 2965480 .. 2965499 -  -4.2   -4.4009   GCTGACGGGAGAAAA            GCTGACGAC CCT GCCGCC-GC            TGTCGGGCTTTCTGG  65 287
HRR29_RS14310 NONE
HRR29_RS14305 2963497 .. 2963515 - -17.4   -4.9792   TACTGGAGATAAAAA             CGCCCGGC AAA GCCGGGCG             TTATGTGATTAAGCC 100 34
        yedQ 2961710 .. 2961739 - -12.8  -2.78384   CCCGGGTTTATCACA       CCCGGCAGCCCG GCCCGG CGGGCTGGCAGG        AGGGGCTGGATCACT  73 48
        dsrB 2960082 .. 2960114 -  -2.7  -3.53012   TTTTGCTTCTGGAAA     GGTTGTCGGGCACGC GCTGT GC-TACCCGACG-CC     GTGTTACTCCGCCTT  49 29
        fliE 2947826 .. 2947836 -  -2.4  -4.17762   GATGGCTGAAAATAA                 CCAG GAC CAGG                 TACTCATCCTCAACC  55 126
HRR29_RS14200 NONE
HRR29_RS14195 NONE
HRR29_RS14190 NONE
HRR29_RS14185 NONE
HRR29_RS14180 2944963 .. 2944976 -  -2.5  -2.78088   AAACGCTTCAATAAC               TTATT GTGC AATAA                CGCCAAAATGAATCC  40 12
HRR29_RS14175 2943502 .. 2943517 - -10.4  -5.22312   ACTTACAGCAAAAAA              GCCCAC CGAG GTGGGC               TATATCCTTAATTTC 100 42
HRR29_RS14170 2942364 .. 2942380 - -12.3  -4.87626   CGCTAACACCAAAAA              CGGCAAC GAG GTTGCCG              TTTTGCGTTTACCCT 100 40
HRR29_RS14145 2937267 .. 2937282 - -11.8  -5.76633   GCAGAGATAAAAAAA              CCCCGC CGAA GCGGGG               TTTCACGCGTAAAAT 100 40
HRR29_RS14140 NONE
HRR29_RS14135 NONE
        fliZ 2934530 .. 2934551 -    -3  -4.05033   CGTAGTGTAGAGAAA           TCGCCT GCAACGTCAA AGGCGA            CTGCGCTACATCTTA  56 48
        tcyJ 2933649 .. 2933666 - -11.3  -5.85425   GAAAGAAATAAAAAA             GGCGCTT TTAA AAGCGCC              TTTTTTTTTACGTCA 100 46
        dcyD NONE
        tcyL NONE
        yecC 2931107 .. 2931141 - -11.7  -3.41878   CCCCCGAAGGGAGAA     TAATTTGCTCCAG CCTAAATTT CTGGAGCAAATTA     GTGCAAAAATGCTAC  82 37
        sdiA 2930150 .. 2930174 - -14.3   -5.5112   GCCAGTAACAAAAAA          CGGCTGGATGC AGT GCATTCAGCCG          TTTGCTCGTCTGTCA 100 60
        uvrY NONE
        uvrC 2926944 .. 2926963 -  -4.3  -2.77781   TGTCAGTAAAATTTA            GCTCTAT GTTGCT ACAGAGC             CCTCAATGTTTCAAC  46 28
        pgsA 2926358 .. 2926370 -  -4.1  -3.60431   AAAATTACGGCGAAA                CGATC ACT GATCA                AGCAAATCCCCGCGC  53 16
HRR29_RS14080 2926103 .. 2926126 -    -3  -3.10843   TAAAACTTTTAAAAC          TGACACCCGC TACT GCGCATGTCT           TTAATCTGGAGCGGG  43 32
HRR29_RS14075 NONE
HRR29_RS14070 2925857 .. 2925870 -  -8.1  -5.65177   ACAGGCACAAAAAAA               CCACC TTTC GGTGG                TTTCACGACACTGCT 100 69
HRR29_RS14065 2924869 .. 2924882 -  -8.1  -5.64274   TCAGGCACAAAAAAA               CCACC TTTC GGTGG                TTTCACGACACTGCT 100 160
HRR29_RS14035 2918720 .. 2918737 -  -9.1  -5.95539   GGTTAAATAAAAAAA             GGGGCTA TCAT CAGCCCC              TTTTTTATTAGTGCA 100 33
HRR29_RS14025 2916892 .. 2916928 - -15.1  -3.46659   GATACGCAGAATTAA    TTTTAGCGCGGTGCCGG TTT CCGGCACCGCGTTAATT    TACATACACCCGGCG 100 25
        azuC 2915510 .. 2915523 -  -5.9  -5.64274   GCAGGTACAAAAAAA               CCCGC CGAA GCAGG                TTTTTTTAATCAGAA  89 35
HRR29_RS14005 2915141 .. 2915161 - -10.4  -3.55622   TTTAACCGCTTCAAA            GGGCGACA CGTGC CGTCGCCC            CTACCCCTGCTTTAG  79 37
        araF NONE
        araG NONE
        araH 2908683 .. 2908711 - -26.1  -3.32844   CTCGCCATTTGACAA        CCGCCCCGCCAGT AAA ACTGGCGGGGCGG        TTAAGGGGTCAACTA 100 78
        otsB NONE
        otsA 2906134 .. 2906149 -  -6.1  -4.24342   TTCTGCAGGAAGAAA              CGCAG CAATTT CTGCG               CGAATTAGTGGAAAA  69 261
        flhD NONE
        flhC 2904167 .. 2904190 - -15.4  -5.75342   GCGGGGTAAAAAAAA          GCAGCGGTAA TTGC TTACCGCTGC           TGGAATCTTTCCCAC 100 50
        motA NONE
        motB NONE
        cheA 2900240 .. 2900255 -  -3.2  -2.75064   CCTTCTACTTAATCA              GGCG GCTGTGTA CGCC               ACACGTTGTTCACGA  41 7
        cheW 2899684 .. 2899701 - -11.3   -5.5762   AGCAAACACAAAAAA             CGGCAAC CTGG GTTGCCG              TTTTGCATTTACCTA 100 38
HRR29_RS13925 NONE
HRR29_RS13920 NONE
HRR29_RS13915 NONE
HRR29_RS13910 2893638 .. 2893663 -  -2.4  -2.50492   CAGCAGGATGAATAG         CAGCAGGCGC GTCATG GCTCCTCCCG          GCAAACCAGCGGCCC  39 11
HRR29_RS13905 2892682 .. 2892703 -  -2.1  -4.35524   TTGCGAAAGGGAAAA           GCGCGGGGT TAAA ACGCCACGT            CGACAATCAGCGTGT  58 12
         tar 2890909 .. 2890923 -  -8.5  -3.14564   CCACGCTCCCATCAA               GCGGC AAGCA GCCGC               GGTTTAATTGTCAGT  65 40
         tap 2889303 .. 2889315 -  -4.7  -3.55714   ACATTCAGGATACAA                CTGGC ACG GCCTG                CGACCGCCCGACTTC  56 2
        cheR NONE
HRR29_RS13885 NONE
        cheY NONE
        cheZ 2886255 .. 2886288 - -11.8  -3.17075   TCTTCGCTAACCGAA     CTACCCTCAGGTTG ACGCCG CAGCCTGAGGGTAA      TCAGAACAATCAGAA  79 35
        flhB NONE
        flhA NONE
HRR29_RS13840 NONE
HRR29_RS13835 NONE
HRR29_RS13830 2874007 .. 2874022 - -11.8  -5.48063   ATGTAATACAAAAAA              CCCGGC AAGC GCCGGG               TTTTTTCTTATCAGA 100 36
HRR29_RS13820 NONE
        cutC 2870560 .. 2870584 -   -10    -5.626   GAGGGGATAAAAAAA          GGCCCCTG TTGAAATTG CAGGGGCC          TGGTACAAGCAAGCA 100 83
        aspS NONE
        nudB 2864381 .. 2864401 -  -3.2  -4.58685   AAAGTTCTCCAAAAA           TCGC-GCCT TCTC AGGCTGCGT            TAATTACAAATTCTT  65 15
HRR29_RS13775 2863630 .. 2863640 -  -3.2  -2.94099   CGCTCTCATCAGAGA                 GTCG CTG CAAC                 CTCATCAGAGATTTC  43 8
        ruvC 2863037 .. 2863056 - -12.2   -5.9218   GACATAATAAAAAAA            GGCTGGAT GTTT ATCCAGCC             TGATTTCTGATTATC 100 36
        ruvA 2862378 .. 2862396 -  -8.8  -3.32844   TCCTTTACCTCACAA             TGCAGCGC GCA GCGCTTCA             CGAATCAGGGTTTCA  70 1
        ruvB 2861356 .. 2861366 -  -8.2  -2.85947   GGGAACACAACATTA                 CGGC ATT GCCG                 GTGGCGTAATGCCGA  62 12
        znuA NONE
        mepM 2857355 .. 2857376 - -12.3  -5.54907   CGCACAAAAGAAAAA           GCCGGCGTCA GTG TG-CGCCGGC           TTTTTTAACAAAAAC 100 48
        lpxM 2856279 .. 2856300 - -15.9  -4.56597   TGTCTGTGTTAAAAA           GCCCTCTCC AGAT GGAGAGGGC            TTTTTTTATTTCCGC 100 31
         zwf 2851871 .. 2851896 - -12.6  -5.80364   AGTGTAATAAAAAAA         GCTCCGCG-GG TGAAT CCACGCGGAGC         TTAAAAGTTGAAAAT 100 105
         edd NONE
        kdgA 2849215 .. 2849230 - -11.8  -5.67063   TGCAGGATAAAAAAA              CGGGCC AGAA GGCCCG               TTTTTCATATGGCGA 100 46
HRR29_RS13700 2847196 .. 2847211 - -10.4  -2.67588   ATGCAAGCGAAACAG              CGTCGC GACG GCGACG               ACTATCCCTGTAACG  71 27
        ptrB 2844741 .. 2844760 -  -4.3  -3.72576   TGGCCGGGGATTAAA            TACAGCA ACATGG CGCTGTA             CAAGTCCCGCAAGCT  54 332
        yobA NONE
        copD 2842008 .. 2842020 -  -3.4   -3.1544   TCATATGATATTTAA                CCTT GTCAG AAGG                GTTCCCAGGTGGCAA  47 18
HRR29_RS13665 2841609 .. 2841635 - -11.7  -4.88222   ATTAAAAGTGAAAAA        CCGCAG-TGCTT TCGC AAGCATCTGCGG         TTTTTTATTGGAAAC 100 48
        pphA 2838373 .. 2838388 - -11.8  -3.84185   CTGACCTAAAGAGAA              CCCGCC CGAA GGCGGG               TTATTTATTACTGCA  95 33
HRR29_RS13625 2831933 .. 2831952 -  -6.4   -3.1552   GCGCAGGCATGAACA            GGCGTCAT TATA ATGACGCT             ATCAGTAAATGCTAC  57 53
        proQ NONE
         prc 2829099 .. 2829120 - -13.1  -5.11254   AAGAACAAAAAGAAA           CAGGCACAA TTCC TTGTGCCTG            TTGGGTGATTATTTT 100 34
        htpX 2828009 .. 2828035 - -15.9  -5.64274   TCAGGCATAAAAAAA        GCCGGGC-GGAG TGTT CTCCTGCCCGGC         TTATTAGGGTTCTTA 100 44
        kdgR 2825620 .. 2825638 - -11.7  -5.76949   GACTTGCAAAAAAAA             CGCCGCA ACAGA TGCGGCG             TTTTTTTATACGAGC 100 46
        mgrB 2825042 .. 2825053 -  -2.2  -2.83915   CCTTGAGAAAAAATG                CGTA TTAC CACG                 GAATAAACTTATTGA  40 18
HRR29_RS13585 2824685 .. 2824701 -  -2.1  -3.57825   CGGACAAAAGATTAA              CGCTCAG CCA CCAGGCG              GATAAAGTCGTCTTC  47 5
HRR29_RS13580 2823292 .. 2823302 -  -6.8  -2.92463   CGCATCACTTACAGA                 CAGC TCT GCTG                 CGTAACAAAGACCCA  56 393
        cspE 2822709 .. 2822727 -  -9.5  -5.43487   AAAGGACATAAAAAA             GCCCCGC GTTAT GCGAGGC             TTTATGTCTGAGATT 100 75
        ftsI 2820797 .. 2820821 -  -5.6  -4.02108   CGGAGCATAATCAAA          GGGCGAAGTG TACCG CTATTCGCCC          TGGTTATAAACGCCC  66 43
        rlmA 2819467 .. 2819479 -  -4.7  -4.13767   GCTTCCATCGGAAAA                GGTGC CAC GCTCC                ACAAACCTAAGTTCT  64 504
        yoaE 2813743 .. 2813758 -  -5.4  -3.41602   GCCAGCGCATCATAA              CGGGCAC ATC GTGCC-G              TTAATGCCGCTGCGC  56 50
HRR29_RS13505 2808155 .. 2808168 -  -2.3  -3.92373   CAGGGCAGCGACAAA               TCCCG CATT CTGGA                TGCGACGATTTTCCT  53 192
HRR29_RS13495 2805911 .. 2805928 -  -2.6  -2.54745   GTCAGTCACAAAATG             GCGCGC ATCTTA GCACAC              TCCGGGGTAAATTAC  40 37
        tsaB NONE
HRR29_RS13485 2804511 .. 2804539 - -17.5  -5.42259   TTATCCGTAAAAAAA        CAGAGACAGCGGC TGA GCCGCTGTCTCTT        TTCTAACAATAACAG 100 45
        fadD 2802632 .. 2802648 - -11.5  -5.24129   TGCGCCCATAAAAAA              CGCCGGC TTA ACCGGCG              TCTGGGCGATTAGCG 100 47
         rnd 2801440 .. 2801464 - -11.5  -3.55444   GCGCCACCGGGGAAA          TATGCCGGG TATATCG CCCGGCATA          TTTTTTTTATCGCGG  82 32
HRR29_RS13455 NONE
HRR29_RS13450 NONE
HRR29_RS13445 2797914 .. 2797927 -  -9.5  -5.73339   ACAAGCACAAAAAAA               CCCGC CTCG GCGGG                TTTTTTAATCTTAAC 100 36
        fadR 2794658 .. 2794673 -    -9  -6.06723   CGGGCGAAAAAAAAA              CCTCTC GTAT GAGAGG               TTTTTTCTTTTAGCG 100 35
HRR29_RS13420 NONE
        dadX 2790341 .. 2790369 -  -8.8  -2.53392   AAACCCTCGAACGTA       GGCCGGGTAAGCG TTAG CGCC-ACCCGGCG        AACATAAGTTACACC  64 34
        emtA 2786789 .. 2786812 - -11.6  -4.15044   GGTCCTGTGAAGAAA          TCGGGCAGCG TGAC CGCCGCCCGT           CTGCGGCATTACATG  95 34
HRR29_RS13390 2785559 .. 2785578 - -11.4  -5.81412   CTCAGGCAAAAAAAA            CGGCCCTC CGCT GAGAGCCG             TTTACGTCAATTTAT 100 37
HRR29_RS13385 2783175 .. 2783190 -  -8.2  -2.63858   GAGGACACCGAGAAG              CGGCGA TTTA CCGCCG               GGAGCCCGGGTTGCC  61 209
HRR29_RS13370 2778626 .. 2778642 - -10.1  -3.20382   GGCTATAGCGATGAA              CCGCTGG TCT CCAGCGA              TTACCAGGGCGACCC  68 230
HRR29_RS13355 NONE
HRR29_RS13350 2774575 .. 2774590 -  -2.5  -2.67803   TCCTGACCAAAGGGA              TGCAC TACCGG GCGCA               TATGGAGGCCAGCTT  38 293
HRR29_RS13335 2770138 .. 2770156 -  -3.3  -4.27617   CACAGCTTATGAAAA             TTTTTAT TATTC ATAAAAA             TGCGCTCATGCAAGC  62 44
        tssJ NONE
        tssK NONE
HRR29_RS13320 NONE
        tssM NONE
        tagF NONE
        tssA 2761597 .. 2761617 -  -8.2  -3.66178   GCGGTGAAGGTGAAA            CGGCAGGC TCCAT GCCTGTCG            TCATAATGCCTGGAC  72 44
        tssB NONE
        tssC 2759503 .. 2759527 - -21.5  -4.19817   CGTATTGACCGAAAA          GTAGCCGGCCC AAT GGGCCGGCTAC          ACTCATCACGCATCT 100 31
HRR29_RS13290 2758712 .. 2758723 -  -4.4  -3.83026   CTGCCTCATATCAAA                TGAC CCGT GTCA                 TTTGACAGTCTTACA  56 78
HRR29_RS13285 2758081 .. 2758104 - -14.6  -3.56727   GTGAAGCAATCATAA          TGACCGGGGA AAAC TCCCCGGCCA           CATACGCAATTACGC  95 35
HRR29_RS13280 NONE
HRR29_RS13275 2756058 .. 2756088 -   -19  -3.56092   TGATTAGCGCTCAAA       CGCTGCCGCTCTCG GGG CGAGAACGGCGGCG       TTTGAGAAATTGAAT 100 48
        tagH NONE
HRR29_RS13265 NONE
HRR29_RS13260 NONE
HRR29_RS13255 NONE
        tssE NONE
        tssF NONE
        tssG NONE
        tssH NONE
HRR29_RS13230 NONE
HRR29_RS13225 NONE
HRR29_RS13220 NONE
HRR29_RS13215 2740257 .. 2740280 -  -8.8  -3.23452   ATTGCGATAATTCAA          GCGCCGATGA CGCT TCAACGACGC           CAGCCAATAAAGCCG  68 78
HRR29_RS13205 NONE
HRR29_RS13200 NONE
HRR29_RS13195 2734329 .. 2734350 -    -3  -4.77165   TGTTTTATAATAAAA           CCCTATGA TTTGTG TCACAGAG            TTTTATTAACAATAT  69 98
        ychH 2731328 .. 2731345 -  -9.1  -6.11644   TGATGCAAAAAAAAA             CGACTCC CGCG GGAGCCG              TTTCGGCGTTCTTTA 100 48
HRR29_RS13170 2729741 .. 2729759 -  -3.8  -3.34398   TCGCGCGCCGAAAGA             CGACATCA TCG TGATGCTG             ATCTGCATGTCGCTG  49 455
        hemA 2724380 .. 2724397 -  -4.1  -2.52946   TTGTCTTAGAAAATG             GGTATAG GGCG CTATTCC              AGCCCGAGGCTGTTG  44 19
        prfA NONE
        prmC 2722434 .. 2722444 -  -6.8  -3.39018   TGAGCACGGTAAACA                 GGCT CAT AGCC                 ACTGCCCCAGCGTCA  61 18
HRR29_RS13130 NONE
HRR29_RS13125 NONE
        kdsA 2720322 .. 2720335 -  -9.5  -5.56673   AGGGAGAACAAAAAA               CCCGC CGAA GCGGG                TTTTTTTATTAGTTG 100 34
        chaB 2718574 .. 2718593 -  -2.8  -3.61089   GTCGAATAACGATAA            GCAATTAG CGGA CCAGTTGC             AATACAACGGAAGTT  49 86
HRR29_RS13105 2717758 .. 2717775 - -14.1  -3.70068   CAGCATAAGTTTAAA             CGCCCGG CAAG CCGGGCG              TATTGTCAGGCAAAA 100 31
HRR29_RS13085 2713600 .. 2713630 - -11.9  -6.11019   AAAAACCAAAAAAAA      GCGCCCAC-GATGC CGAA GCACCAGTGGACGC       CTTTATCCCGAAGAC 100 193
HRR29_RS13080 NONE
        ntrB NONE
HRR29_RS13070 NONE
        nirD NONE
HRR29_RS13060 NONE
HRR29_RS13055 2702509 .. 2702554 -  -8.9  -2.64981   ATATTCTCAAACTCA TTGCCCAGG-GGCTGCCGAACA AAA TGATCGCCCGCCGCCTGGACAT CACCGAAAGCACGGT  57 135
HRR29_RS13040 2698479 .. 2698496 - -10.5  -5.75342   TGCTGGCAAAAAAAA             CGCGACC CGAA GGCCGCG              TAAACGGATAATCAC 100 43
HRR29_RS13035 NONE
        narH NONE
        narJ NONE
        narI 2691439 .. 2691454 - -11.8  -5.75342   TGGGGCGAAAAAAAA              CCCCGC GAGT GCGGGG               TTGGTATCAAAACGG 100 45
HRR29_RS13010 2689667 .. 2689691 -  -8.5  -2.63596   CCTCATTTGATATGA          TGCGCCCCGCT TCC AGCAGGAAGCA          GGCCAGTAAAAAGCA  61 363
        rssA 2687135 .. 2687163 -  -5.9  -2.74026   ACAGTAACTAAATAG        TGGCATGCGATCG GCA CTATCGCCTGTCA        GATTTTGCTGAAGTA  49 56
        rssB 2686066 .. 2686079 -  -3.9  -3.56268   ACACAGGTAAAGCAA               TCTTA AAAT TAAGA                TCCAATTGCTTATTC  51 35
        galU 2684935 .. 2684956 - -12.3    -5.626   TAGGGCATAAAAAAA           CCGGTG-GGC AGC GCCTCACCGG           TTTCGGACATATCTA 100 49
         tdk 2683154 .. 2683170 - -10.8  -5.59534   AAGCAGAAGAAAAAA              CCCGCC TTTAT GGCGGG              TTTTTTTATGTCTGT 100 56
HRR29_RS12955 2679297 .. 2679312 - -10.4  -5.49729   AATGACGTAAAAAAA              CGGAGC CGTG GCTCCG               TTCTTTCATACGAAA 100 43
        oppA 2676893 .. 2676920 -    -9  -2.87344   GACGTTGGTTAGACA        CCGTGGGGCGAG CATG CCCGCCCCACTC         ATTGCCATTAATGCT  65 33
        oppB NONE
        oppC NONE
HRR29_RS12935 NONE
        oppF 2672944 .. 2672970 - -13.8  -5.02074   TTACCTCGCAAAAAA         TAAGGGCTGACA TCA TGTCAGCCCTTG         CGATTATAACGGGTC 100 29
HRR29_RS12925 2672059 .. 2672088 - -16.7  -3.61398   CTCTGGCGCGAATAA       TAAAAAAGGCTGC GATT GCAGCCTTTTTTA        TTTACTCCGGTAATT 100 27
HRR29_RS12910 2669873 .. 2669896 - -13.8  -3.18044   GACGCTATAAAATCA          GCGGGCACCG GTTA CGGTGCCCTC           ATGGTTTCAGATATC  86 32
        leuE 2669130 .. 2669145 - -10.4  -5.66338   AAACATAATAAAAAA              GGCTCC CGTA GGAGCC               TTTTAAACCATCAAT 100 36
HRR29_RS12900 2667818 .. 2667838 -    -6  -4.57073   GATTCGCTCGAAAAA            CGCCAGGC TGTGC GCCCTGCG            CATCTGGCACGTTTG  78 295
        tonB 2666806 .. 2666821 - -10.4  -5.83822   GACAGGCAAAAAAAA              GCCTCC ATCA GGAGGC               TTTTTTTATTCCATC 100 31
HRR29_RS12865 2664296 .. 2664314 - -11.8  -3.80511   ACAAATGAGTAATAA             GTGATCTG CTA CAGATCAC             ATTAAAACCAGTAAC  93 41
        ompW 2663567 .. 2663595 - -16.1    -3.794   TTTGAAGTGAGCAAA        GCAAACTGGCCAC CCT GTGGCCAGTTTGA        CGGGGGATCAGAAAC 100 33
        yciV NONE
HRR29_RS12805 2653114 .. 2653124 -  -8.2  -3.68036   AATCAGGTCAAAAGA                 GGGC TGA GCCC                 TGCTTTGATGGCCGC  72 62
        rluB 2652162 .. 2652181 - -10.7  -5.68438   TTACTAAAGAAAAAA            GCCCGGT TCGTTG ACCGGGC             TTTTATATTAACCGT 100 33
        sohB 2649480 .. 2649499 -   -15  -4.30014   TCGATTAATGCAAAA            CGCGAGGC ATAT GCCTCGCG             TTTTTGTTTACAGCA 100 33
        topA 2646177 .. 2646194 - -14.1   -5.5074   CAAGGCAATAAAAAA             GGGCCGG AAAT CCGGCCC              TTTTACAGGTAAGTT 100 55
        cysB 2644756 .. 2644770 -  -3.6  -3.79747   TCATTTAGGACCAAA               CAATTG GTA CAATTA               ATCATCTGTTGAGAT  54 317
HRR29_RS12765 NONE
HRR29_RS12760 2644148 .. 2644163 -  -8.2  -5.80951   AGGGAAAACAAAAAA              CCCCGC CGTA GCGAGG               TTTTACAATTTAGTG 100 272
        acnA 2641308 .. 2641327 -   -15  -4.64598   GAATGATGCTAAAAA            GCCCGGCA CGGG TGCCGGGC             TCGTTTTATCAGTCC 100 34
        pgpB 2639696 .. 2639709 -  -2.4  -3.48026   GCGAAACGGAAAAAG               TGAC GCGCAG GTCA                TGGATCTATGGCCAA  47 59
HRR29_RS12740 NONE
        lapB 2637973 .. 2637993 -  -5.3   -4.2074   CGCGGAACAGATAAA            CGGCCAGCA TTC TACCTGCCG            ACGCCGCAAATTGAC  67 142
        pyrF NONE
        yciH 2636829 .. 2636854 - -16.9  -3.33525   CGCACGTATATAACA         CGAGCCACGGC ATTT GCCGTGGCTCA          TTTATTTTAACCGCC 100 32
HRR29_RS12705 2634116 .. 2634142 - -10.9  -4.27465   GAGAATGCAAAAGAA         GACGCCTTTCT GACCA AGAACGGCGTC         AACGAACGGCAGGGT  90 115
HRR29_RS12665 NONE
HRR29_RS12660 2621009 .. 2621026 -  -2.7  -5.44119   CTTATGCTAAAAAAA             GATGAAA TCTA TTTCAGC              GAAATAACCTTAAGC  84 144
        pspA NONE
        pspB NONE
        pspC NONE
        pspD 2611897 .. 2611923 -  -5.2  -3.61371   AAAGGTGATTGCAAA         GCAGCTCA GCGCAATATTG TGAGCTGC         CGCAAAGAAAGAACC  56 113
HRR29_RS12600 NONE
HRR29_RS12595 NONE
HRR29_RS12590 NONE
HRR29_RS12585 2607068 .. 2607082 -  -3.4  -3.04517   ACTCCTTGTTAAAAT               TGGCCG CCT CAGCCC               TTCACGCCACCGGCG  45 19
HRR29_RS12580 NONE
HRR29_RS12575 NONE
HRR29_RS12570 NONE
HRR29_RS12565 NONE
        pgmB NONE
HRR29_RS12555 2600063 .. 2600082 - -10.8  -6.08342   TAACAAACAAAAAAA            CCGGAAAT TTGC ATTTCCGG             CGAACACCTTTCTTA 100 38
HRR29_RS12550 2599082 .. 2599102 -   -14  -4.07568   TTCCCTTCGCTAAAA            CCAGGGGC GAAGT GCCCCTGG            CGTGCAGTCGGTCAG 100 37
HRR29_RS12540 NONE
HRR29_RS12535 2595420 .. 2595445 - -12.7  -3.04144   CGGTGATCGGGAAGA         TGGCTGTCAAC AAAT ATTGACAGCCA          GCACGATAAGTGAAC  80 47
        tyrR 2593791 .. 2593806 -    -9  -5.05505   ACCATAAAGTAAAAA              GCCTCT TTAC AGAGGC               TTTTTGTTATTCGTC 100 32
        ycjG 2590358 .. 2590372 -  -7.1  -3.02511   TTTATCGCTGGAACA               GCTCC GCCGA GGAGC               GAGACGTGGTGCTGC  54 366
HRR29_RS12505 2588121 .. 2588136 -  -8.2  -3.31208   TGTTAGAATAACAGA              GACCCG GCAT CGGGCC               ACGCATAGCGAATGA  67 96
HRR29_RS12480 2582039 .. 2582054 - -10.4  -5.42862   AGAGGCGTAAAAAAA              GCCTGG CATG CCAGGC               TTTGAGGTGCTGTCA 100 38
        zntB 2580722 .. 2580739 - -11.3  -5.82316   AGGAGGCAAAAAAAA             GCCGACT ATGA AGTCGGC              GTCGTACGAATCAAT 100 215
        dbpA 2579034 .. 2579066 -  -9.9  -2.60988   AAGTGAAGTAAGCGA      TTAGCGTCTCAGAAA CAC CTTCTGAGACGCTTC      ATTCTTCATTTCAGC  68 31
HRR29_RS12455 2574781 .. 2574793 -  -6.3  -4.30978   GTTAACTGACGAAAA                TCTCA GAG TGAGA                CGGCTATTCTAAAAT  72 448
HRR29_RS12450 2574300 .. 2574310 -    -4  -3.70853   GCAACCACTTAAGAA                 TAGT CCT ACTA                 CTATTGGCAGTGACG  56 90
HRR29_RS12445 2573565 .. 2573580 -  -3.2  -3.85389   GCTGAACAACTTAAA              TTCGCT AGCA AGCGTA               AGTCTGGTAGTGAGC  54 227
HRR29_RS12440 NONE
HRR29_RS12435 NONE
HRR29_RS12430 NONE
HRR29_RS12425 2571616 .. 2571636 - -14.7  -5.27335   CCCTGGAAATAAAAA            GCCACCAGC GGT GCCGGTGGC            GGGTAAACGCGTATG 100 46
HRR29_RS12410 2565416 .. 2565432 -  -2.1   -4.7629   GGAGCAACTTAAAAA              CCACCGC TTT GTGCTGG              AAAATGTCAACGGTA  70 352
HRR29_RS12385 NONE
HRR29_RS12380 2560339 .. 2560361 -  -5.7  -3.90112   CCTGTCGCAATGAAA          TTTAGCGGCA GCCG TGCCG-TAAA           AATATCTCCCTTATT  63 249
HRR29_RS12375 2559175 .. 2559190 -  -3.9  -2.84098   CCGGGCAATTAACGA              CCGCC CATGAT GGCGA               TGTAATCCTGCGTCC  44 3
HRR29_RS12370 NONE
HRR29_RS12365 NONE
HRR29_RS12360 NONE
        patD 2554912 .. 2554937 - -18.3  -3.53012   GGCGGGTGCGGGAAA         CGCCTGGCCGC GCAT GCGGCCAGGCA          TGGCGGACTTAGTGT 100 34
HRR29_RS12350 2554579 .. 2554590 -  -4.4  -2.60508   CATCTTTTAAAAATG                GAAG CGTG CTTC                 AGAAAAGCGAGACCA  45 24
HRR29_RS12345 2553368 .. 2553385 -  -4.1  -4.42788   TCGAAGCGGATAAAA             GCAG-CGC TGC GCAACTGC             ATGCCGTGATGGGCA  68 387
HRR29_RS12325 2545187 .. 2545199 -  -7.7  -2.79803   TAACTTCATTTAAAT                GTGAC ATT GTCAC                TCCTTGTGAATCGCC  59 115
HRR29_RS12320 2544785 .. 2544800 -  -5.4  -3.47078   CAGCGGATATCAGAA              CGTTGGC GCG GCCA-CG              ACTATCGCCGTGCTG  53 185
HRR29_RS12305 NONE
HRR29_RS12300 2542133 .. 2542154 - -14.5  -4.55697   ATCTTCACAAATAAA           TATGGCGGG AAAC CCCGCCATA            GTGCTGTTTATTTAT 100 33
HRR29_RS12295 2541154 .. 2541182 -  -9.6  -3.06141   AATTAATGAAATAAC        GCTCCTGATGGC AATAA ACCATCAGGAGT        TATTCACCAGATAAA  70 81
HRR29_RS12285 2537672 .. 2537691 - -13.6  -4.81083   CGTAAGCATCAAAAA            GGGAAGGC AAAT GCCTTCCC             TTTTTTATTTACAGC 100 34
HRR29_RS12270 2534146 .. 2534171 - -10.3  -4.87665   GCTGATTGAGAAAAA         CGTCGCCAGCG TCAA CGCTGGCGTGG          AGAAGGTAGAACAAA 100 279
HRR29_RS12260 2532017 .. 2532027 -  -5.4  -3.96068   CCATGCTAAGAATAA                 GACT TTA AGTC                 GGCAATCAGCGTTTT  63 5
HRR29_RS12255 NONE
HRR29_RS12250 NONE
HRR29_RS12245 NONE
HRR29_RS12240 NONE
HRR29_RS12235 NONE
HRR29_RS12230 NONE
HRR29_RS12225 NONE
HRR29_RS12220 2524369 .. 2524382 -  -3.1  -4.25104   CCTGCGGGATGAAAA               CCCTA AGTG TAGAG                CACCATTAGTAGGTT  60 31
HRR29_RS12215 NONE
        pptA 2523429 .. 2523451 - -11.3  -4.65168   ACGAGACGGGAAAAA          CCGGGGAGGA GAGT TCC-CCCCGG           CAATTGCGCTTACAT  95 35
HRR29_RS12205 2522039 .. 2522055 -  -6.5  -4.68593   GTCACCACGGAAAAA              GGCGG ATTGCTG CCGCC              GGTAGATCAGATTGA  78 237
HRR29_RS12190 2517762 .. 2517802 - -11.9  -3.01422   GAGTTTTATAAAGGA  CTGAACCGCAGCGGCACTC TGA AAATGTCGTTGCGATTCAG  CATCCTGACGTTTCG  78 43
HRR29_RS12185 2516672 .. 2516685 -  -8.1  -2.77013   CACCGCCTCAATAAC               CCAGC TGAC GCTGG                CTAAATTTCTGGAGG  54 403
HRR29_RS12175 2514895 .. 2514918 -  -6.7  -4.57569   TTATCCCCTGAAAAA          TGCCCCGTA AAGATG TAAGGGGCA           TAATGTCAGCAGAGG  78 44
        fusA 2512276 .. 2512297 - -13.7  -4.42386   GCTGGATTGAGAAAA           CCCTCCCCC TACA GGGAGAGGG            TAACCGTATTACTTC 100 34
        nhoA 2510619 .. 2510631 -  -2.6  -2.63585   GTACATCTTAAACAT                GCCC GAAAT GGAC                GAAGCCGCCTTTAAT  38 137
HRR29_RS12145 NONE
HRR29_RS12140 2506508 .. 2506541 - -14.7  -3.64198   CCTTGAGAGATAGAA     CGGTGCGAAAGCAGAG GAC CTCTGCTTTCGC-CAG     AATCTACACGGCAAC  95 29
HRR29_RS12100 2498902 .. 2498920 - -10.3  -4.36914   CTTGTCTGTACAAAA             GCCAGCT GAATA AGCTGGC             TTTTTTTTATCCGTC  90 45
        fdnG NONE
        fdxH NONE
        fdnI 2491421 .. 2491446 - -15.4  -2.64155   GTCTGCGCAAACTCA         GCGCCGCCGG GCAAAG CCGACGGCGC          AGGTCTTACTTCATT  90 31
HRR29_RS12055 2489298 .. 2489320 -  -4.3  -3.48036   CAGCAGCATAACGAA           TGATAAAAA TATCC TTTTCATCA           GTGCATCCTGTAAAT  53 23
HRR29_RS12050 2488768 .. 2488787 - -11.4  -5.29846   AATGGCAAACAAAAA            GCCCCGAC TGGT GTCAGGGC             TACAAAGGTTTTAAG 100 50
        araJ 2487125 .. 2487169 -  -8.7  -3.71672   CGCCAGTAAAATCAA CGGCTGCATTTACTGCGCAT CTGTCC ATGCGC-GTAAAGCCAGCCA GCTGTCAAAGGATGA  69 303
HRR29_RS11980 2471722 .. 2471734 -  -4.8  -5.52384   TCTCGACGAAAAAAA                TCCG CCCGC CGGA                TTTACCTGCGACAGC  91 450
HRR29_RS11970 2470622 .. 2470643 -  -7.9  -2.52464   GCCGCGCTGAAGGGA           TAGCCGGGC GCAA ACCCGGCTG            TGGCTTAATTGAGCT  58 30
HRR29_RS11960 2468795 .. 2468840 - -14.8  -3.02144   GCAGGGGTGTGAACA GCCGCAGC-CGCTACAGCCCTC ACGC GAGGGCCGTAACGTGC-GCTGC TGGCGCAGTCTGGGT  88 40
HRR29_RS11920 2460268 .. 2460287 -    -5  -2.87026   CATATTCACACCACA            GGGGAA CGTTACTT TTCCCC             GTTGCCAATTCGGCT  49 14
HRR29_RS11915 NONE
HRR29_RS11910 2457958 .. 2457975 - -14.1  -2.60079   CGAGGCGACAATTCA             GGCCGCC GGAT GGCGGCC              AGTGAAGGAGGGAAT  83 40
HRR29_RS11905 2456271 .. 2456291 - -18.3  -3.56092   TTATGATGTGCGAAA            CGCTCCCGC CGG GCGGGAGCG            TGATGGGTTAAAACC 100 33
HRR29_RS11900 NONE
HRR29_RS11895 NONE
HRR29_RS11890 2452325 .. 2452362 -    -5   -4.1347   TTTCAACGACATAAA   CCAAT-ACCTCAAGGAA AATTA TTCCTTATGGTTATCGG   CCATTCCAAAACTTA  64 74
HRR29_RS11885 2450743 .. 2450758 - -10.4  -5.43414   ACCAGATACAAAAAA              GGCTCC CTGC GGAGCC               CCCCTCATACAATCA 100 38
HRR29_RS11880 NONE
HRR29_RS11875 NONE
HRR29_RS11870 NONE
HRR29_RS11865 2448516 .. 2448549 -    -4  -3.02511   TTTACTCCGTGAACA     GTGAAAATTATCGT GTGAGG ACGATGATTTTCAT      TCACGGAAAACGCAG  47 22
HRR29_RS11860 NONE
HRR29_RS11855 NONE
        dsbG 2445017 .. 2445028 -  -5.8  -3.75153   GCTGGGGAAGCTAAA                TGCC ATCA GGCA                 GAAACGCCCCGTTTC  61 52
        opgC NONE
HRR29_RS11795 NONE
HRR29_RS11790 NONE
HRR29_RS11785 NONE
HRR29_RS11780 2427208 .. 2427243 -  -3.1   -5.0538   CTGCAGGTGAAAAAA    CGCCAGCCGTCAGACG AAGGA CGTCAGG-GACAGGCG    GCGCTCATTGCCTTA  78 389
HRR29_RS11770 2425037 .. 2425064 -  -7.8  -4.62069   CTGGCACCCGAAAAA        CAGCCAGG-ATCC GGC AAATGCCTGGCTG        CGCGAGCAGCTGCTG  83 55
        treZ 2419786 .. 2419799 -  -2.4   -2.6627   GGAAGGGATCATAAC               GATG CTTCTC CATC                AGCAAAGCGAACGAC  39 5
        treY NONE
        glgX 2415192 .. 2415209 - -14.1  -2.78384   CCTCCCTGTATGACA             CCGCCGC CCGC GCGGCGG              CATCACTCTAGGGCT  84 39
HRR29_RS11725 NONE
HRR29_RS11720 NONE
HRR29_RS11715 NONE
HRR29_RS11705 2409295 .. 2409315 -  -3.9  -4.07687   ATCGTGCCGGGAAAA            GTGGCCTGA GCG TCAGCGCAC            GGCCCGACACACTTC  59 17
HRR29_RS11690 NONE
        cusF NONE
HRR29_RS11680 NONE
        silA 2400822 .. 2400839 - -12.7  -5.02074   TCATCCCGTAAAAAA             CCCGCCA TCGC TGGCGGG              TTTTTTTATGGCTTT 100 31
HRR29_RS11660 2398721 .. 2398747 -  -3.6  -5.29846   AACGGGAAACAAAAA         TGAGACCGGAAC AAA GTGCCGCTTTCA         TCTAATTGGAAGGTA  81 371
HRR29_RS11605 NONE
HRR29_RS11600 NONE
HRR29_RS11595 NONE
HRR29_RS11590 2388947 .. 2388977 - -17.6  -4.11394   ACGTTATGTTGAAAA       GGCCGCTGCGAAAA TCT CTCCCGCAGCGGCC       TATTTAGCATAACGT 100 55
HRR29_RS11585 2387876 .. 2387902 -  -3.6  -5.29846   AACGGGAAACAAAAA         TGAGACCGGAAC AAA GTGCCGCTTTCA         TCTAATTGGAAGGTA  81 371
HRR29_RS11530 NONE
HRR29_RS11525 NONE
HRR29_RS11520 NONE
HRR29_RS11515 2378102 .. 2378132 - -17.6  -4.11394   ACGTTATGTTGAAAA       GGCCGCTGCGAAAA TCT CTCCCGCAGCGGCC       TATTTAGCATAACGT 100 55
HRR29_RS11505 2375936 .. 2375949 -  -2.4  -3.04715   CAGCGTTTTCAAAAG               CTGA AGTATA TCAG                ACATTTTTCAACCCT  42 61
HRR29_RS11500 NONE
HRR29_RS11495 2374983 .. 2374998 -  -2.6  -4.05877   GACCATACGAAATAA              CGTGTCA ATG TGACA-G              TCATCAATTTATGCA  56 29
HRR29_RS11490 2374455 .. 2374488 -  -6.7  -3.01924   CATCGTCGTTGAAGA     CAATACCGATCGG GACTGGAT CCGCGCGGTATTG      GAAAAAGGGGTCTCC  52 80
HRR29_RS11480 2372882 .. 2372909 - -11.3  -3.69482   CCAGCCAACAGATAA        GACAGGCTACC TCAACT GGTAGCCTGGC         CAGCGTGTGGCATTT  86 208
HRR29_RS11475 2371781 .. 2371794 -  -2.3  -4.62441   TTTTAGATAAAGAAA               CGCGA GACT CCGCA                AGTCTGCAGGGCGTG  66 328
         tam 2369898 .. 2369913 -    -4  -3.87641   AACAGGGTGGATAAA              CGGTGAC CCT GTCAC-G              TCTGAATCCCTGCGA  57 414
HRR29_RS11420 2362198 .. 2362209 -  -2.2  -3.64487   CCACAGCCTGAACAA                CCGT CTGA ACGA                 TATGTCCATCGTCCT  51 359
HRR29_RS11370 2350748 .. 2350764 -  -2.9   -4.9725   ATGTTGATATAAAAA              CAGCAAG GAG CCTGCCA              TGTATTCCATTACCT  76 461
HRR29_RS11350 2347318 .. 2347331 -  -3.1  -3.13382   CAGTAAATCGGAAGA               GCT-GG AAA CCGAGC               CGAGTGCGAATATCG  43 392
        marR NONE
        marA NONE
        marB 2345620 .. 2345637 - -14.1  -5.68039   AAAGGCATAAAAAAA             GCCCCGC GTCT GCGGGGC              AAAAACGAATCAGAG 100 35
        ydeE 2342987 .. 2342998 -  -7.2  -3.69354   TTTCATAAGGGCAAA                GCGG TCAG CCGC                 TGTCAGTATGATTAC  63 348
        ftrA 2333784 .. 2333814 -  -6.2  -3.34895   TGTATTCTGAAGCAA       TAAGACTGTCTTCA GAA TAATGACAGACTTA       CAGCGATGCCCTGGT  59 388
HRR29_RS11270 2332884 .. 2332897 -  -2.3  -4.57073   TATCCCTCTGAAAAA               GCACC TTAT GGTGT                CGCCCGTTCCTTTTA  66 290
HRR29_RS11260 2332079 .. 2332093 -  -7.1  -4.13282   ACCACATCTTCAAAA               TGCCG CAGCC CGGCA               GTATCGTGGCGTCCG  71 91
        benE 2328226 .. 2328236 -  -8.2  -3.21276   CGCTGGTGCAGAACA                 CGGC GAC GCCG                 CTAACGGACATCGCG  59 116
HRR29_RS11235 2326373 .. 2326403 - -12.7  -4.87803   GACCGCGAAATAAAA       TAAAACGGCCTGC TTAAT GCAGGCCTTTTTA       TTTACGCCATTCGTA 100 27
        pepT 2322213 .. 2322228 -  -5.4  -3.80733   CGCATGGGACAAGAA              CCCGAT GAGC ATCGAG               AATATCGAGCGCATT  61 421
HRR29_RS11210 2320803 .. 2320825 - -14.2  -2.70932   TCGGGTGGCGAATCA           GCACAGCAAC AGC GTTGCCGTGC           GTAACGGTTTTACGC  80 118
HRR29_RS11185 2315353 .. 2315389 -  -3.6  -4.09685   TTTCAGGCTTGAAAA   CCGCTTTATGCGCGCCC GCAT GAGC-CTCTTCAAGCGG    GTGATGAAGCACCAC  60 42
HRR29_RS11170 2311743 .. 2311782 -   -10  -4.64861   CTCCGGTAAAATAAA  GAAAGGGTACTGCGAGCT TTTC AGCCCGCAGCATGCTCTC   TGGTTTTATTAAAAG  93 55
HRR29_RS11165 NONE
HRR29_RS11160 NONE
HRR29_RS11155 NONE
HRR29_RS11150 2309541 .. 2309569 - -16.1   -3.4072   GATGGGGCACGAGAA        TTGCCGGGCAG TTTATGG CTGCCCGGCAA        AACCGATTACGGTTT 100 32
HRR29_RS11145 NONE
        cydB NONE
HRR29_RS11135 2305237 .. 2305250 -  -2.3  -4.59773   GCTGATGGTGAAAAA               GGCGT GGGA AGGCC                AGATGACCGACGATC  66 235
HRR29_RS11110 NONE
HRR29_RS11105 2301436 .. 2301453 -  -4.1  -4.63218   GGCGGGGGAATAAAA             GCGAACA TCCT TGTTCGT              TTATTGCTCACTGCG  69 61
HRR29_RS11100 2300118 .. 2300130 -  -3.4  -4.07687   AGGCGCTGTCCAAAA                TTGC TCCCG GCAA                TTTTGTCCTCAGCTT  59 279
HRR29_RS11095 2297264 .. 2297279 - -10.4  -5.75945   ACCGGGCAAAAAAAA              GGGACC TTTC GGTCCC               TTTTTCACATCTTAT 100 37
HRR29_RS11060 2289209 .. 2289224 -    -4  -4.43477   TCCATGGAAGCAAAA              CGGCTGA ATA TCAGC-G              TACATGTTGAGGCAG  67 166
HRR29_RS11050 2287719 .. 2287742 -  -5.8  -3.87994   ATTTACTCGCATAAA          CGCAGCGGCC AGCG GGGCGCAACG           CGCTGGCTTAAGGAT  61 131
HRR29_RS11040 2286257 .. 2286284 - -10.6  -2.83409   GATCAAGGCAGGACA        GAG-CGACCCCGC GGG GCGGGATCATCTC        GGGTACCACGTGTCG  72 41
HRR29_RS11035 2285383 .. 2285394 -  -2.2  -2.95116   TCAGTACCGAAATCA                GACA TTTT TGCC                 TCCTTTTGTTGATTA  42 138
HRR29_RS11030 2285097 .. 2285108 -  -7.2  -5.05606   GCTAAGAAAAATAAA                GCCC CGAA GGGC                 CTTTTATTATTTTCG  85 32
HRR29_RS11020 2282432 .. 2282455 - -12.4  -3.74158   GGAACGATAGGGAAA          TGGCGTTCGG AACT CCGAACGCCT           GCTGGATTATACGGT  93 32
HRR29_RS10995 NONE
HRR29_RS10990 NONE
         gap 2254839 .. 2254858 -  -8.6  -2.72379   TTAAGGGTGTAATCA            GAAGCGAT AACA ACCGCTTC             AGAATAACCTTTGGC  61 269
HRR29_RS10970 NONE
HRR29_RS10965 NONE
HRR29_RS10960 NONE
HRR29_RS10955 2248485 .. 2248500 -  -7.5  -3.82084   GTTCAATATCAACAA              GCGCC TGAAGG GGCGC               GTGGATATGACCATG  66 480
        azoR 2244140 .. 2244163 - -14.6  -5.45802   GGGGGAAAAGAAAAA          CCCTCCCACC AGGC GGTGAGAGGG           CAAAATCTTAGGCTG 100 33
HRR29_RS10940 2242907 .. 2242922 -  -4.6   -5.1861   GTCAGCAGCAAAAAA              GCGGCA AAAG TGCAGC               GCACGGCAAAGAAAT  86 497
HRR29_RS10930 NONE
HRR29_RS10925 NONE
         hcp 2241288 .. 2241308 - -11.9  -2.51547   CTGGGATAGGAAGAG            TAAGGGGCA TCG CGCCCCTTA            GCGTTATGCTGTAGG  76 29
HRR29_RS10915 NONE
HRR29_RS10910 2239101 .. 2239114 -  -5.3  -3.57144   CGCTCTACTGGCAAA               CGTAA GGGA TTACG                CGCCGAGCTCCTTGC  56 21
HRR29_RS10900 NONE
HRR29_RS10895 2237051 .. 2237084 -  -5.1  -3.78436   AACCGAGATGAAGAA     GCTGGGCGTCACCGT CGCC ACGGTGACGCTTTTC      TTTACAAAGTCGCAG  59 91
HRR29_RS10850 NONE
HRR29_RS10845 2229960 .. 2229973 -  -4.5  -3.53091   ACGTCCTTTTCGAAA               CCGCT TCAC AGCAG                AGCATTCTCAGAATT  53 39
HRR29_RS10825 2227557 .. 2227571 -  -2.8  -3.62235   ACGAAATAAAAGAGA               TATGCC GCA GTCATA               AATCAGAAACAAAGA  49 250
HRR29_RS10815 2226557 .. 2226588 - -17.4  -3.53012   TGGGCGCGCTGTAAA      TTCATCACTCCGGG GCGG CCCGGAGTGATGCA       AAAATCCTATAAGCC 100 32
HRR29_RS10795 2223084 .. 2223098 -  -2.1  -2.75997   TGGCGAGAAATTAAC              CG-CAG ATGC CTGACG               CGATTTAATTTTACT  40 36
HRR29_RS10790 2222214 .. 2222233 -   -10   -4.0162   GCTGCACAGCATAAA            CCGTGCAC TTAG GTACACGG             TCAAGCGTGATTTTT  83 473
HRR29_RS10780 NONE
HRR29_RS10775 2220502 .. 2220512 -  -3.2  -3.08679   CTTTTTGACGTAACA                 GGAC GGT ATCC                 GCATTCTCTGACTAG  43 67
HRR29_RS10770 NONE
HRR29_RS10765 2216263 .. 2216289 -  -3.7  -3.28791   ATGCTTTCCTCAGAA         GTGTTATCTAC TCATG GTAGTTTACAC         GTTTTCTGTTCGGTG  47 20
HRR29_RS10760 2215605 .. 2215641 -  -5.2  -3.31322   TCGAATGGGTGAGAA    CTGACGCCTATATTAC TATTG GTAACTTAGGTGTCAA    TCCGCCCCCAGCGAT  54 40
HRR29_RS10755 2214929 .. 2214956 - -15.6  -3.03474   GGTGATAACGAGACA        CGCGCTTCCTTC TGGC GAAGGAGGCGCG         CCTTTGCTGTGACTG  93 52
HRR29_RS10740 2212931 .. 2212945 -  -4.9  -4.17762   GATGGCTGAAAAGAA               CCGGG TCATT CCCAG               GGCTCGACGTGAGTC  64 375
HRR29_RS10725 2210407 .. 2210419 -  -7.7  -2.71731   TCCACTCCTGAATGA                GGTGA AAT TCACC                CTGAATTTATCTTAC  58 79
HRR29_RS10720 2209863 .. 2209879 -  -2.9  -3.09242   TTAACAGAAAAAGAC              TCACACC GTT GGTGAAA              ATAGCATAAGGGTGC  43 99
HRR29_RS10715 2209168 .. 2209183 - -11.8    -3.694   ATGGAAAATAATGAA              GCCGCC AACT GGCGGC               TTTTGTGCAGGAAGG  93 46
HRR29_RS10705 2207014 .. 2207027 -  -5.9  -3.66178   TTCGTGAAGGCGAAA               GCGGA GATG CCCGC                CAACCATTTGATCAT  61 145
        paaZ 2193686 .. 2193712 - -12.2  -3.78934   GCGCGTGCAGAACAA         TCCCCTCTCCCC TTT GGGGAGAGGGTC         AGGGTGAGGGGCGTT  93 39
        tynA 2191232 .. 2191248 - -11.5  -4.90217   TAAATAGATGAAAAA              CCGGGCA TTG CGCCCGG              TGCGTTATTTATTTC 100 34
HRR29_RS10625 2189084 .. 2189100 - -10.8  -3.84514   ACGTGAAGCAGGAAA              GGGCGG ACGAA CCGCCC              TTTTGCGTGCACCGT  84 40
HRR29_RS10620 2187809 .. 2187826 - -11.3  -4.70319   CTAGTAAAAGCAAAA             GGCAACC TGGA GGTTGCC              TTTTTTGTGTTTGTT  95 134
        feaR 2184802 .. 2184812 -  -6.8  -3.54935   GAAACCCTGCTGAAA                 TCGC GCA GCGA                 TCTGTTCTGAGGATG  63 361
HRR29_RS10580 2179304 .. 2179343 - -16.4  -3.24708   GACCTGGGAAACAGA  CAGTACGCCGGGTGG-GGC ATA GCCGCCACCCGGCGTCACG  CTTACGCCAGTTCGT 100 27
HRR29_RS10570 2176895 .. 2176909 -  -2.8  -3.29043   AACGTGGCGTGACAA               CGAACA CGG CATTCG               GGGATGAATCTCTCC  45 105
        uspF 2176244 .. 2176260 - -10.8  -4.99134   AGCGCAAATGAAAAA              CCGGGC TTCTC GCCCGG              TTTTTGTTATCCGCT 100 75
        ydfG 2170354 .. 2170371 - -14.1   -3.2789   ATAACCCGAAACAGA             CCCGGCC CGCA GGCCGGG              AAGGGCAGAGTTAGC  86 36
HRR29_RS10545 2169196 .. 2169207 -  -3.6  -3.92373   GATTTGAGCGACAAA                GCGG TTCG CCAC                 GCGGCAAGCCTTGCG  57 422
        ydfZ 2168613 .. 2168632 -   -15  -2.79796   CGGTAGTTCAGCACA            TGCCGCCG TGCG CGGCGGCA             TGGCTGCGCACAGCT  93 40
HRR29_RS10505 NONE
        speG 2161734 .. 2161753 -   -15  -4.79352   CTACTGAGAATAAAA            CCGCGCAG GTTA CTGCGCGG             TCGGTTTCAGCAGGC 100 15
HRR29_RS10490 2160647 .. 2160660 -  -3.8  -2.92792   ATTGAGGGTAAATTA               CTGC GCTTCA GCAG                CCCCGTTGCCTGTGC  44 9
HRR29_RS10485 NONE
        dmsD 2157333 .. 2157359 - -15.9  -3.81339   GAGGTATAAGCTAAA         GGCTTGCCCGC CAACC GCGAGCAAGCC         ACACCCTTAGCGATA 100 32
HRR29_RS10465 2154142 .. 2154152 -  -2.4  -3.90112   CTTGCGGTAATTAAA                 GCCG CTC CGGT                 TGAGATGGCGGGGCG  53 87
HRR29_RS10455 NONE
HRR29_RS10450 NONE
HRR29_RS10445 2150293 .. 2150313 - -15.5  -5.55769   GCCGATAATAAAAAA            CCGCCTTCA TTG TGAAGGCGG            TTTTTTTACATCTGA 100 80
HRR29_RS10430 2145190 .. 2145204 -    -5  -2.73275   TATTTATATACAGTA               TATCAG CTC CCGATA               GAAGTTGCAGCAAAA  47 47
HRR29_RS10425 2144783 .. 2144808 - -17.7  -5.25893   ACAGACAGCAAAAAA         GCCGTAAGCAG TTAT CTGCTTACGGC          GCCAGGATCGGAGAT 100 55
HRR29_RS10420 2144242 .. 2144267 - -13.4  -5.77734   AAATAAAAAGAAAAA         TGCCGTTCAG AATAAA CTGAACGGCA          TCTGTTATTACGGAG 100 241
HRR29_RS10415 2141214 .. 2141235 - -14.5  -6.06723   TTTCGTAAAAAAAAA           CCGGGCATA ACAT TATGCCCGG            TTTTCGCTCCTGTCA 100 46
HRR29_RS10410 2140042 .. 2140054 -  -4.1  -5.02201   AAAAGATGATAAAAA                TTCCG AAT CAGAA                CGTATCGATACAATC  76 169
HRR29_RS10405 2139255 .. 2139287 -  -7.7  -4.59081   TAAAGCGATACAAAA     GCTCCAGCCGCCGC TGTGAT GCGGCAGCTGTA-C      TTACGTCAGGTAATT  82 101
HRR29_RS10390 NONE
HRR29_RS10385 2136088 .. 2136118 - -12.8  -3.28001   TAGTCCTAAAGCGAA       TTTTTAGATGTGAC GGT GTCACATCTAAAGA       GCTCATACGCCGGAT  81 55
        osmY NONE
        osmX NONE
        osmW NONE
        osmV 2132414 .. 2132430 - -15.1  -4.56597   TCTGCGTGCGAAAAA              GCCGGGC GAT GCCCGGC              CAGAAAGGTTAGCTG 100 34
        clcB 2130558 .. 2130581 -  -8.9  -4.16016   GGATTGCGTAATAAA          GACGCTCTG GTGCTG CAAAGCGTC           TCGTCGCTGGAACTG  79 470
HRR29_RS10340 2126590 .. 2126614 -  -9.3  -2.70932   CTCGTGTCTGAATCA          GCCGATGACAA AAA TTAGCATCGGC          TTGATTTAAACACGA  64 54
HRR29_RS10335 2125061 .. 2125080 - -13.6  -2.54015   AAAGGGTGAGAAGAG            TGCCGGAG CAGG CTCCGGCA             GAGGAATTAAAGATA  83 32
HRR29_RS10330 2124250 .. 2124262 -  -6.9  -3.05384   TGGTTTTTCATTTAA                CCCCA CTG CGGGG                CCGTTGAAATAACTA  57 155
         asr 2123624 .. 2123653 -   -15  -5.95539   CCGGAAATAAAAAAA       CGGCGCGGAACC TGTTCC GGTTCAGCGCCG        GTTTACCAACGTGCC 100 68
HRR29_RS10320 2122395 .. 2122409 -  -2.1  -3.30474   GTGGATAACGATGAA              CAGGCG GCCG CGC-TG               GTGAGCGGTACGGTG  44 210
HRR29_RS10300 2117919 .. 2117939 -  -8.9   -4.4648   ACCTTGATGAGAAAA            CGCGCGCGA TCT TCGGGCGCA            GCTATGCGGCGGAGC  82 297
HRR29_RS10290 2115948 .. 2115964 -  -2.9  -3.01915   CTGTGATAAAAATAG              TGTGCCA ATA TAGCCCA              TCGGGTGCCGTAAAG  43 59
HRR29_RS10285 2115336 .. 2115349 -  -5.2  -2.83164   TCAGCGAGCAGCAGA               GCCG CCGCAC CGGC                TATCGCCGCTATGCT  47 249
HRR29_RS10275 NONE
HRR29_RS10270 2112670 .. 2112693 -  -5.9  -3.48395   ATTCGTCTGACATAA          CGCCGCTCC ATAAAG GGAATGGCG           TTATTAAATGCGCGC  58 78
HRR29_RS10265 NONE
HRR29_RS10260 2108363 .. 2108386 -  -3.8  -3.64236   ACTGAAACGCGGAAA          CTGGCGGA GGATGAAA TCCGCCAT           GTCCTGAAAGACCGT  54 84
HRR29_RS10250 2105598 .. 2105626 - -11.2   -4.2679   TAACGGTCAGTAAAA        TCAAAAGGATCC TCTTG AGATCCTTTTGA        GCATCAATCTGATTG  91 503
HRR29_RS10215 NONE
HRR29_RS10210 2099307 .. 2099330 -  -7.4  -2.64099   TTGTTTGACGATAAT          CGCCTGCGC GCCAACA GCGC-GGCG          CTGATGGAAACGATC  58 188
         ogt 2096104 .. 2096134 -  -7.7  -2.93817   AACCCTCAATAAGGA      CAAG-AGACGGCAA CGTG TCGCCATCTTCTTG       AAATTCCACAGCTTG  59 94
         fnr 2095215 .. 2095248 -  -8.4  -2.83112   ACGGAAGTGATTACA     CCAGACCAATAAATC ACAAG AATTTAT-GGTCTGG     TCATCAACATGCGGA  62 44
HRR29_RS10180 NONE
        uspE 2093779 .. 2093794 - -11.8  -5.37593   GTTGAAACGAAAAAA              CCGCCG AATT CGGCGG               TTTTTTTATTGCCGG 100 110
HRR29_RS10160 2089316 .. 2089332 - -11.5   -5.9003   AAAGTAACAAAAAAA              GGCGGCA TTG CGCCGCC              TTTCGTAAACGATGT 100 43
HRR29_RS10155 2087768 .. 2087789 -  -4.4  -3.66844   TTTACAGTTCAACAA           TGGGAAAG GCGATG CTATCCCA            TTAACATCCAGGTTG  56 18
        folM 2086706 .. 2086721 -  -3.2  -3.72576   GGGCTGGTGATCAAA              GCCGCAC TGG GCGCG-C              TGGTGGTGTTACTGA  52 324
        rstA 2085773 .. 2085818 -  -6.9  -4.92828   AAACGTAAAAATAAA CGCGCGAAAGAGAGGGCATTGC TGC GTAATACCTTCA-TTTCGCGCA CGTTATGCTAGCCAG  85 50
HRR29_RS10135 2085233 .. 2085283 -  -5.5  -4.91977   CAGCAAAAGATAAAA CTGCACAAACAGCTTTTTCATTG GATCT CACCGAAGAAACGCTTTGTGCAG AATATACATGAAAAC  80 71
        rstB 2083923 .. 2083946 - -11.7  -2.89971   TTATCATATAGCACA          GCACGCCGG GTCAGG CCAGCGTGC           GGTTGAAGTCAGGCA  77 34
HRR29_RS10125 2082850 .. 2082874 -  -9.9  -2.73034   AAAGCGCATAAAGAG          GGGCTGACGCT GAA AGCCTCCGCCC          TGGCGCTGGGCTATC  61 103
        manA 2078152 .. 2078173 - -15.9  -4.20136   ATCCCTAAAATGAAA           CCAGGCGGT AAAA ACCGCCTGG            AGATATTAAGCCTGC 100 196
HRR29_RS10105 2076572 .. 2076587 - -10.4   -5.4505   CCCGGCAATAAAAAA              CCCCTC GTGC GAGGGG               TTTTGACGTTTACTG 100 35
HRR29_RS10095 2073647 .. 2073664 - -12.7  -4.54727   GTCCTTAAAGTAAAA             CCCCCTC AAGA GAGGGGG              CTGAGGCATCAGGCT 100 34
HRR29_RS10090 2072414 .. 2072451 -  -9.9  -4.61527   AAAACGGGGTAAAAA   GCTATTTGCGCAAGGGA ATAT TCCGTTGCGCAAATTGA    TTACAGGAGCGTGTT  93 26
         add 2071265 .. 2071299 -  -7.8  -3.05596   GAGCTGGGTATTGAA     TCTGCCAAACATCGCG CCA CGCTCTGTCTGGCATA     AGTTTTAAGGGCTGT  61 80
         blr 2069790 .. 2069813 -  -9.6  -3.53012   TTTTCTTTGCTGAAA          TTCAGGCATC AGAC GATGCCTGGA           AGAGAAGGTTAACCG  75 103
        ydgT 2069452 .. 2069465 -  -2.4   -4.3739   TACTTTCTTATAAAA               CGTA ACGCCA TACG                GACTTAGGCACTTCA  58 4
HRR29_RS10065 2068883 .. 2068894 -  -2.2  -2.93869   TATTATCGGACAAAC                TCAC GCAG GCGA                 CAACAGGTTATCTGT  42 48
        rsxA NONE
        rsxB NONE
        rsxC NONE
        rsxD NONE
        rsxG NONE
HRR29_RS10035 NONE
         nth 2062371 .. 2062381 -    -4  -5.18726   TTTTGACAACAAAAA                 TTCA ACA TGAA                 GTTATCAGGGTGATC  79 204
        dtpA 2060414 .. 2060433 - -12.2  -6.24157   ACGGACAAAAAAAAA            GCCGCTAA TACA TTAGCGGC             TTCTGTTCTGTCGTT 100 52
        gstA 2059699 .. 2059738 -  -7.9  -4.12198   TATAACCGGCCAAAA CGTGTAGGCCGGGTAAGCG TTAG CGCC-ACCCGGCA-ACACA  GGCCGCTCGGTTAGT  73 36
        slyB 2054344 .. 2054381 - -14.3  -4.09117   GGGAGTGATAAATAA   TGTAAATGGATGTGGCC TGAT GGCCACATCCATTTTTA    ATTAACGTGGTGAAA 100 27
HRR29_RS09985 2052797 .. 2052816 - -13.6  -4.16305   ACTGACAAACAACAA            GGCCTTGC AGCA GCAAGGCC             TTTTTTTTACTTAAA 100 32
HRR29_RS09975 NONE
HRR29_RS09970 NONE
HRR29_RS09965 2049004 .. 2049014 -  -8.2  -3.54424   TCCGATCGGCCTAAA                 CCGC TTG GCGG                 TGGCGGAGCACGCTA  62 38
        eptA 2045464 .. 2045475 -  -5.8  -3.05844   GGCCGCACTCTAATA                GACC GTTC GGTC                 TAATGCAAGCGAGTT  52 40
HRR29_RS09940 2044843 .. 2044862 -  -6.4  -5.27335   TTGGGTAAATAAAAA            CGCCTG TTAAATGC CAGGCG             CAGTAATGCTGTTTT  89 12
HRR29_RS09935 2043659 .. 2043676 - -12.7  -2.78816   CGATGTTTTAGTATA             GCGGCGA AGTA TCGCCGC              TATCAATGAACAATG  79 47
        gloA 2043162 .. 2043186 -  -9.9   -4.2828   GGTGATGCAGTAAAA          CTACGGGCGCA TGT TGCGCCCTGAG          GGATCAGTTGCCCAG  87 29
         rnt 2042420 .. 2042437 - -11.3  -5.63517   TGCGCAAATAAAAAA             GCGACCT GATA AGGTCGC              TTTTTTTTATTCTTC 100 32
HRR29_RS09915 2040908 .. 2040937 - -12.1   -3.5485   TATGCAAAAGAGGAA       CTTACCCTGCCAC GGAT GCGGCAGGGCAGG        GGTTAGCGAATGGTT  86 28
        sodB 2040206 .. 2040229 - -16.8  -5.09521   GGAATAAACCAAAAA          CGCAGAAGGG CGAA CCCTTCTGCG           TGTCTCTTACGCGGC 100 32
        purR 2037459 .. 2037470 -  -5.8  -3.25088   CCGTAAAGCGATTAA                CGAC GGTA GTCG                 CGGAACGGACCGTCC  54 10
HRR29_RS09885 2035070 .. 2035089 - -10.7  -4.13767   CCTTCCATGGTAAAA            CGGGAGC ACTCCG GCTCCCG             TTAACACTTAATATT  87 148
         cfa 2033739 .. 2033760 - -14.5  -5.70522   AAGAAGAATAAAAAA           TAACCCCGG GCAT CCGGGGTTA            TTTTTTAGCGTGCGA 100 30
        mdtK 2031462 .. 2031483 - -15.9  -4.25401   CAAAGTGAAGAGAAA           GTAGCCGCC GGGC GGCGGCTAC            CGCGTCGTTAACGTG 100 33
HRR29_RS09865 NONE
HRR29_RS09860 2031154 .. 2031189 -  -4.9  -3.31365   CAGGATATCAGAAGA   GGATTTGCACCATTTCA GGAC TGAAATGGTGCG--TCC    GAGTGGACTCGAACC  54 16
HRR29_RS09855 2029284 .. 2029309 -    -9  -3.39449   GCTGAGCAACATTAA         GACCCACC-CG TCCGT CGCGGTGGGCC         TGCGTAATAACTCCA  64 182
HRR29_RS09840 2027656 .. 2027673 - -12.7  -5.65927   GAGTGAAATAAAAAA             GCACCGG TTTC CCGGTGC              TTTTTTATTAGATTT 100 33
HRR29_RS09830 NONE
HRR29_RS09825 NONE
HRR29_RS09820 NONE
HRR29_RS09815 2023798 .. 2023828 - -21.2  -2.89881   TACTGATTTTACAGA       TGAAGCCCGGCGAG TCT CTCGCCGGGCTTCT       TTTTTGTATCCGGCA 100 278
HRR29_RS09790 NONE
HRR29_RS09785 2018266 .. 2018296 -  -6.9  -3.32202   CAGTTTCACATAATA       TTGTTATCAAGGC GTTAA GCCATGATGACAA       CTTATGGCGGCAGGT  61 62
        pykF 2016488 .. 2016502 - -12.8  -5.84381   CCAGGAATAAAAAAA               GCGCCC GGA GGGCGC               TTTTTATCAAAATTA 100 57
         lpp 2015951 .. 2015969 - -14.6  -5.81412   CGCAGGCAAAAAAAA             TGGCGCAC AAT GTGCGCCA             TTTTATTAACAGGTA 100 44
HRR29_RS09725 NONE
HRR29_RS09720 NONE
HRR29_RS09715 2005479 .. 2005500 -  -3.7  -4.06905   AAGAAATGAAGCAAA           GTTGACTGGA AAA TCCAGTCC-C           GTACACGGAGGTAAG  59 164
        fdhF 2003225 .. 2003242 -  -8.3  -4.82819   TACATGAGAATAAAA             GGGCCGC GAGT GCGGCCT              TTTTTGTGTCTGCAA  88 80
        ydiK 1998109 .. 1998148 -  -5.7  -3.56092   GTATCATGCGGGAAA GTGTA-GGCCGGGTGAGCG TTAA CGC-CACCCGGCAGCATAC  CTTAATGCGTGTTCT  58 27
        rprA 1997343 .. 1997357 -    -7  -4.22338   ATCACAAGCTCAAAA               GCGGCG GCA CGCCGT               TTGCGTTCCATTTCG  71 501
HRR29_RS09665 1990255 .. 1990274 -  -5.1  -3.07994   CTGAATCTGAGCTAA            TGTACTA GCATAT TAGTACA             TGCGGCGATTAAGCC  50 18
        aroH 1988889 .. 1988903 -  -5.8  -3.75598   CAATCAATGTAACAA               TGATAA TCA TTATCA               ATAAACTGCAAATTG  61 190
        hemP NONE
HRR29_RS09650 NONE
HRR29_RS09645 1985537 .. 1985566 -  -6.3  -2.71364   GCAGGGCGCTAAGCA       GGGCAAGCCAC-CG TTT CATGCGGCCAGCCC       TTTCGCCGTTAAGGC  53 11
HRR29_RS09640 NONE
HRR29_RS09635 NONE
HRR29_RS09630 1982985 .. 1982995 -  -4.6  -3.86346   TCAGGGGGCGAGAAA                 CACC TGC GGCG                 CGGCGTGAGCCGGAT  58 0
HRR29_RS09620 NONE
HRR29_RS09615 NONE
HRR29_RS09610 NONE
HRR29_RS09605 NONE
HRR29_RS09600 1976846 .. 1976862 -  -6.5  -2.91582   GAGTTTATTGACAGA              CAGGCGT TTG ACGACTG              GTTTGCCACTTACCG  51 328
        yncL 1964002 .. 1964017 -  -3.2   -3.4582   CCAGTCTACCAAACA              GGGC CGAAATAT GCCC               CTTCTCAGGATCGAT  47 67
HRR29_RS09520 1963778 .. 1963803 -  -7.5  -4.73635   TAGAATGTAATAAAA         GCGGGCCGA TGATGATG TCGGCCCGT          TTATTGTCTGCGGTC  84 75
        pfkB 1961754 .. 1961779 - -14.1  -2.89475   GACTCAGAGACGACA         TTCCCCTCCGT AACG ACGAAGGGGAA          CAGGCGTTAATTTCG  84 32
        ghoS 1961354 .. 1961367 -  -3.7  -3.50466   AAAAATACGAACTAA               CGCAC ACCT GAGCG                GTTTAAATTCATACT  51 47
HRR29_RS09500 1960394 .. 1960413 - -10.7  -3.41878   TTCTGTAAGCGATAA            GGGTGGC GGCAAG GCCACCC             GTTATCTTCTCAGGC  77 35
        hxpB 1959025 .. 1959039 -  -8.5  -3.41126   TCACAAACCGGAGAA               GGGCG TTAAC CGCCC               TGCAGGTGATGCGCC  67 16
HRR29_RS09485 NONE
        tcyP 1956785 .. 1956798 -  -9.5  -5.65177   ACAGCCATAAAAAAA               CCGCC ATCA GGCGG                TTTTTTTATTTCGAC 100 46
        katE NONE
        nadE 1947013 .. 1947031 - -13.2  -4.49756   GCGCAAACATTAAAA             GCGGTAAC TTG GTTACCGC             TTTGCTTTATTTTTT 100 32
         cho 1945771 .. 1945797 -  -6.5  -2.75074   TGGACTTTAACATCA        TGACCCGGC-GC GACT GCTGCCGGGCGA         AGGTACGCGTTGCTG  49 209
        xthA NONE
HRR29_RS09380 NONE
HRR29_RS09375 NONE
HRR29_RS09370 NONE
HRR29_RS09365 NONE
HRR29_RS09360 1931640 .. 1931654 -  -2.7  -3.44051   GGCTGACCACCACAA               CGCGC GTCTG GAGCG               GTTATGTAACGCTGA  46 54
HRR29_RS09345 1929863 .. 1929895 -    -7  -3.17723   GGACGTGGAAGTGAA     TGTGCCGCCGGAAGT GTTT AGCTCCAGCGGC-CA      GAATCAAACGGTGCA  56 145
        gdhA 1928058 .. 1928072 -  -2.1  -5.29445   GTTCAAGAAGAAAAA              GAGCGC GGCA GC-CTC               TTAAACCGTAGGTCG  76 158
        sppA 1922394 .. 1922417 - -15.4  -6.09196   TTCAAAAGAAAAAAA          TCCCCTCTTC GCGG GAAGAGGGGA           CGGTTTTTAACGGAC 100 32
        ansA NONE
        pncA 1920600 .. 1920622 -  -6.2   -3.9392   CGCGAGCTGAAAGAA           GACTTTGGCA TCA CGCCGAAGCC           GATTGCGACGATGAA  66 96
        gapA 1918536 .. 1918551 - -10.4  -6.02919   TTATAAATAAAAAAA              GGCGAC CGAA GTCGCC               TTTTTGGATCAAACA 100 52
HRR29_RS09285 1917577 .. 1917594 - -14.1  -4.28548   ATCTATGCATCAAAA             CGGGGCG CTTG CGCCCCG              TTTGCTTTAGCGTGG 100 51
        yeaG NONE
HRR29_RS09270 1913043 .. 1913064 - -15.9  -4.87803   GAGGTCGAAAGAAAA           CAGCCAGCG GGTT CGCTGGCTG            TTGGATTATGCGTTG 100 31
HRR29_RS09265 1912444 .. 1912463 -   -10  -4.86731   TTTCTGGAAAGAAAA            GGCTGACA GGGG CGTCAGCC             ATCGCGGTTACGCTT 100 33
HRR29_RS09255 1911474 .. 1911491 -  -4.7  -4.43844   TGATGAGCGAGAAAA             TGGCGGA AGAG CCCGCCG              CCTGGCAGACGCTGA  70 287
HRR29_RS09245 1909664 .. 1909683 - -13.6  -4.25104   TCGCGGGTAGGAAAA            GGCAGACC CGAT GGTCTGCC             AGAGTCTTTAACGGG 100 33
HRR29_RS09235 1908021 .. 1908031 -  -8.2  -3.53563   AGATCCCGGTTCAAA                 GCCC GCA GGGC                 GTACGCACGGAGTGC  62 499
HRR29_RS09220 NONE
        yoaK 1906271 .. 1906288 -  -8.3  -5.06103   ACAAGCGTGAAAAAA             GGCTGCC AGAT GGCGGCC              TTTTTACGTAGTGGC  91 118
HRR29_RS09195 1900588 .. 1900627 -  -2.9  -4.56775   AGTCTGCTTCAAAAA  CCGTTATGCTGATGCTTT GCGAT ACAGC-TCAGCATCACGC  TATCGGACCACATGC  65 262
        rluE NONE
HRR29_RS09170 1897300 .. 1897310 -    -4  -2.82987   GGAATACTCACGACA                 TTGA ACT TCAA                 GGCGGCGTATTCTAT  46 40
        mnmA NONE
        hflD NONE
        purB 1894091 .. 1894116 - -16.3  -3.08776   AACCGGGGAAAAGCA         TCCCCCTTTTC GGGC GAAAAGGGGGA          GAGGGGCGTTACTTC  93 34
        phoP NONE
        phoQ 1891820 .. 1891839 -  -3.4  -3.25072   CGGATTATAACGGAA            GCTCAGCC CCTC GGCTGCGA             GATCCTCGCATTTTT  47 52
HRR29_RS09140 1890565 .. 1890590 - -11.1  -5.08088   AAGCGGTAAGAAAAA         GCCCGGT-GGCG CTA CGCTTACCGGGC         CTACGGGATCGTGCT 100 88
HRR29_RS09130 1887763 .. 1887786 -  -8.8  -2.98823   GCTGTCCCATATAGA          CGCCTCAGGC AGCA GACTGAAGCG           GGGTTTGTGTGTAAC  67 409
        potA NONE
        potB NONE
        potC NONE
        potD 1883916 .. 1883949 - -19.7  -3.05715   AACGCGGTCAGTTAA     TCCTCCTCACGCCGC ACGT ACGGCGTGAGGAAGA      ACGCGATACCGTTTA 100 38
HRR29_RS09100 1880490 .. 1880510 -   -14  -4.11484   GGCAATCGCCTAAAA            GGCACCCG TCCAG CGGGTGCC            TTTTTATTTATGAAT 100 33
HRR29_RS09070 1874177 .. 1874195 - -17.4  -3.53224   CACGGCGGGGCTAAA             CGCCCCCG AAA CGGGGGCG             GAGAGGGCATTAACG 100 35
         mfd 1870367 .. 1870381 -    -7  -2.71712   CTCCCGGCGGTAAAT               CGCCGC TTC GCGGTG               CCCTCGGCTTATTCC  55 253
HRR29_RS09060 1869027 .. 1869045 -   -16   -5.4505   CGCTGCAATAAAAAA             CGCCCTGC TGA GCAGGGCG             TTTTTTATTTCCGAT 100 41
HRR29_RS09050 1867394 .. 1867407 -  -2.3   -4.7339   AAGAAACCGTAAAAA               CGCCT CGTC AGGAG                TGCCGTAACGTCTCC  70 467
         maf 1848160 .. 1848177 -  -5.5  -4.37198   AAGGTAAACGTAAAA             CGGCAAC GAAT GTTGTCG              TTTTTAATGTTTGCT  69 127
         rne 1843456 .. 1843473 - -12.7  -5.64274   GCAGCCATAAAAAAA             GCCGACC ATAA GGTCGGC              TTTTTACTTTCAGCG 100 44
HRR29_RS08915 1841143 .. 1841164 -  -5.9  -3.55548   GAACATGTCTTGAAA           CTGGGCATGT TTT AC-TGCCCAA           TCCGTCTGGATTGGG  58 49
        flgA 1830397 .. 1830411 -  -2.9  -4.64657   CGAAATCTTTAAAAA               GATTA TAGGT TAATC               AGAATATTCCCATCA  65 13
        flgM NONE
        flgN 1829532 .. 1829557 -  -6.2  -4.26189   GCATAAACGCCAAAA        GGGGAGTTCACC TTAT GGTG--CTCCCC         GCTGCATGATTTGTC  72 50
        mdtH 1824203 .. 1824227 - -15.7   -2.7458   GAAAAAACTGAGAAG          TGGGGCGGGAG GGA CTCCCGCCCGA          GGGAAAGGCTACGCG  90 34
HRR29_RS08815 1823530 .. 1823545 - -11.8  -5.75342   TTTCCGTAAAAAAAA              GGGCGC CGCA GCGCCC               TTCAGGTTAATCGGT 100 32
        pyrC NONE
        dinI 1822018 .. 1822033 - -11.8  -5.71712   TTTTAGACAAAAAAA              GCCGGG GCGA CCCGGC               AAAAAAACACAATGA 100 51
        bssS 1821489 .. 1821505 -  -9.4  -4.38748   GGGAGAAATAAATAA              GGCACC GCGTG GGTGCC              TGTAGAGAGAAAAGT  86 51
        solA 1820265 .. 1820289 - -19.3  -4.64676   GCAGTGTGAATAAAA          CGGGCCCCGGA ACC TCCGGAGCCCG          TGCGGATTATCTGTT 100 32
HRR29_RS08790 1820098 .. 1820112 -  -2.8  -3.59895   ATAAAGCTAAATTAA               TGTCAA TTA TTGTCA               GTCAGGGTTTTCAAT  49 36
HRR29_RS08785 NONE
HRR29_RS08780 1818734 .. 1818762 - -18.2   -3.8917   CCGGAATGATAATAA       CGCCCGGCACGGC GAAA GCC-TGCCGGGCG        AATCTATTATGATTT 100 32
HRR29_RS08770 1816500 .. 1816528 - -10.9  -4.35524   CTTTTAAAGCTAAAA        CGGCATGCGGCCC TGA GGACCGCATGAGG        ATTAATAGCGGGACG  91 27
        mdtG 1815116 .. 1815134 -  -3.1  -3.57185   TTCAGGGAAAGAATA             GCTGAAT ATAAG ATTCTGC             AAGTATGAATGCGAA  49 63
HRR29_RS08760 1814428 .. 1814447 -  -9.3  -4.52857   ACCCGCCATATAAAA            TACCGGC TTAATC GCCGGTA             TTTTTTTAGAGGTTA  86 278
        mdoC 1808886 .. 1808908 - -19.2  -3.66378   GAGAGCTGATGCAAA           CGCGGCGCAT CTG ATGCGCCGCG           TGATTTATGAGGCTT 100 30
        csgD NONE
        csgE NONE
        csgF NONE
        csgG 1803260 .. 1803279 - -12.2   -5.8187   GAGCGAATAAAAAAA            GGCGAGAT AATC ATCTCGCC             TTTTTTATGCGCTTC 100 44
HRR29_RS08670 1799985 .. 1800004 -   -10   -5.8901   ATATAAAAGAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTCATCTTAAATAT 100 40
HRR29_RS08660 NONE
HRR29_RS08655 NONE
HRR29_RS08650 1797040 .. 1797059 -   -10  -5.79526   ACATGCGAAAAAAAA            GCCCGCAT TTTC ATGCGAGC             TCTTCTTTAAAGATG 100 39
HRR29_RS08645 1796858 .. 1796877 -   -10  -5.79526   ACATGCGAAAAAAAA            GCCCGCAT TTTC ATGCGAGC             TCTTCTTTAAATATG 100 39
HRR29_RS08620 1790612 .. 1790629 - -14.1  -5.07486   CAGTTCTAATAAAAA             CGGCGGG AAAT CCCGCCG              TTGTTGTTTTGTAGG 100 72
        putA 1784141 .. 1784164 - -15.4  -5.41143   TACTCCCCAAAAAAA          TAAGGCTCCG TCTC CGGAGCCTTA           TTAGCACAGCGTTAG 100 37
HRR29_RS08600 1783579 .. 1783595 -  -2.1  -4.11216   CGGTGACCGGTAAAA              CGCTCCA GGA CGAGGCG              TTTTTCCACAGCACC  59 162
        rutA NONE
        rutB NONE
        rutC NONE
        rutD 1779795 .. 1779805 -  -2.4   -3.8709   AAAGCTCCTTATAAA                 GCGG GTT CCGG                 GCTGTGCAGCAGGCT  53 8
HRR29_RS08570 NONE
        rutF 1778690 .. 1778700 -  -2.4  -3.02461   TAAGGCGGGTTAACA                 GGCG GGT CGCA                 TAAGCGCGTGGTAGC  42 9
        rutG 1777300 .. 1777333 - -13.2  -2.60244   TTCTGAAGGAATGTA     CACGTCGGGTGATG CCTGGC CGTCACCCGACATG      GTGATTTCACGAATC  81 32
        wrbA NONE
HRR29_RS08530 1773941 .. 1773960 - -10.6  -4.02762   CGAAGTAAAAGAGAA            CTCCCCGC TGCG GCGGGGGG             AAACGCTTAGACGTT  87 32
HRR29_RS08520 1772051 .. 1772064 -  -2.4  -2.57211   ATTTGGTTTTATAAT               GCAA CTATAT TTGC                GAGCATTTTGTGCTG  39 57
HRR29_RS08515 1770998 .. 1771033 -  -3.9  -3.93695   CCCATCACGCAGAAA    GAGCTGACCAAGCAG CTGCGC CTGTTTGAGCAGCGC     GGGCTGGTGACGCGG  57 168
HRR29_RS08505 1769758 .. 1769773 -    -9  -4.08945   AGCACGCCGGTAAAA              TGCTGC GGGT GCAGCA               TCAGCTGCAGAAAAA  75 217
HRR29_RS08495 1767791 .. 1767837 - -10.1  -2.87564   TCACTTCGGTACAGA GGCGCTCGCTATCGCTGCCCAGC GGT GC-GGGCCACGAT-GCGATTGCC ATCGCGGAACGCTGG  64 257
        hpxW 1759926 .. 1759941 -    -6  -2.57132   TTTTCTCCTCAGAAT              CCGGCG GCCG CGCCGT               TGCTGCGCGGGTCAA  49 3
        hpxX NONE
HRR29_RS08445 NONE
        hpxZ 1757828 .. 1757882 -    -5  -3.53444   CCGTTTAAGAAGTAA GTGTGCCGTGTTTAGCCGGGT--GGCG GCTG CGCCTTACCCGGCCTA-CAGGACCCAC AGGGCATACGGGACA  56 86
HRR29_RS08420 1753744 .. 1753768 - -17.1  -3.44146   CGGTGCCAGAATGAA          CGGGCCGCAGC TAA GCTGCGGCCGG          AAGGAGGAAGTTACT 100 36
        guaD 1752310 .. 1752335 -    -9  -2.59564   TTGTGACGGGAGAAG         CGGCAGACGA GCATTT CCATCTGCCG          TTTGTGATTGCGCCC  57 50
        hpxO NONE
        hpxD 1749091 .. 1749103 -  -4.1  -2.77013   CAGCCCGTCAACAAT                TACGC TCA GCATA                TCGGCCTCCGTCATA  46 36
HRR29_RS08390 1748133 .. 1748156 - -15.4  -3.71649   CCGCCAAATTCGAAA          CCCTGCGATA GCAA TATCGCAGGG           TTTTTTCGTTTTACA 100 36
HRR29_RS08380 1746511 .. 1746525 -  -5.8  -2.57211   ATTCGGCCTCAGAAC               TTTTGA TAT TCAAAA               TGCAGCTGCATGCTC  49 123
HRR29_RS08375 NONE
HRR29_RS08370 NONE
HRR29_RS08365 1743653 .. 1743685 - -17.1  -3.35073   AGGAGGGGGAACGAA      TGAAGGCTCCGGAGA GAT CCTCCTGAGCCTTCA      GGGCAGCATTAACAG 100 50
HRR29_RS08360 1742510 .. 1742527 - -12.7   -4.2204   AAGCGGAATAAACAA             CGCCACC CGCG GGTGGCG              TTCATGCATTGAACG  95 120
HRR29_RS08350 1741465 .. 1741489 - -14.4  -4.12532   TCCGCCAGATATAAA          CCCCAGGTTA CTCGT TAACCTGGGG          TTTTTCTTTTGCCTT 100 57
        yccA 1738639 .. 1738661 - -16.4    -5.626   TAGGGCATAAAAAAA           GGAGAATGCC ACA GGCATTCTCC           TTTTTCGTATCCGTT 100 45
HRR29_RS08320 1736312 .. 1736322 -    -4  -3.53012   CCCTGGCTCTTTAAA                 CAAA CCC TTTG                 GGGTCTTTACGGTAA  53 48
HRR29_RS08315 1735694 .. 1735727 -  -5.3   -3.2048   GTGAAACGCCATGAA     CGAGCCTC-GACATCA TCC TGACGTCAGAGGGTGG     GCACCCTCTGACGTT  52 61
HRR29_RS08310 NONE
HRR29_RS08305 NONE
HRR29_RS08300 1731210 .. 1731222 -  -3.3  -2.89655   TCTGTGAAAAAAACG                GCGAC AGT GTAGC                AAAAAAGCCGCCGAA  44 55
        tusE 1730764 .. 1730776 -  -6.2  -3.53012   GTGGCGTGGCTGAAA                GCGG GCGGG CCGC                GCAGCGCACGGGTTG  58 102
        rlmI NONE
        hspQ 1727438 .. 1727451 -  -9.5  -6.15536   AAGTAATAAAAAAAA               GCCCG TTAT CGGGC                TTTTTTTACACGCTT 100 39
HRR29_RS08260 1726131 .. 1726145 -  -5.6  -2.67441   TAACTGACTACACGA               TGACGG GAA CCGTCT               GACGCTGCAAGAGAA  49 59
        mgsA 1725136 .. 1725163 -  -5.6  -5.26316   CCAGGGGATAAAAAA        GC-GGTCACCC TGCTGGC GGATGACCAGC        TGGAGCCGCTGCTGG  88 502
HRR29_RS08245 NONE
        yccS 1720517 .. 1720532 -  -5.4  -4.63486   AGTGCGGCAAGAAAA              GAGCGCT ATC AGCGC-C              ATCAACGAAACCGAC  75 269
        sulA 1719210 .. 1719222 -  -4.8  -2.78414   TCAAATATAAATCTA                CCGA TATCT TCGG                CTTAGGCCGAGCACC  49 269
        ompA 1718021 .. 1718035 - -12.8  -5.60689   TCAGACAATAAAAAA               CCCCGC ATG GCGGGG               TTTTTTTATAAGACG 100 46
HRR29_RS08215 1715587 .. 1715603 -  -4.4  -3.63515   GTGTACGCTGAACAA              GTCCGA TCAGT TCGAAC              TAAACCAGCCCAGCC  53 15
        fabA 1714953 .. 1714977 - -18.7  -5.00616   GTCTCTTTCAAAAAA          GAAACCTCCGC AAT GCGGAGGTTTC          GCCTTTCTGGGGGGG 100 54
HRR29_RS08175 1705661 .. 1705687 -  -4.3  -4.14739   TGAGCCAGGCGAAAA        TGCTGCGCTCTG CCTG CTG-GCGCAGCC         CGGCGTAACCATTGC  62 137
        ssuE NONE
HRR29_RS08155 NONE
        ssuD NONE
        ssuC NONE
        ssuB 1699533 .. 1699550 - -11.3  -4.68645   CAGGTAAAAGCAAAA             CGGCAAC CTCG GTTGCCG              TTTTTTGTGTTTTCT  95 70
HRR29_RS08130 1695564 .. 1695576 -  -7.7  -5.43866   GAATTGTTAAAAAAA                GCTCT TTT AGAGC                TTAGTTCTGTATATC 100 428
HRR29_RS08105 1692786 .. 1692809 -  -5.4  -3.96618   GGCAAGGTTAAAGAA          CCTGAATTTA TATT TAAATTCAGT           GATATAAGGAAGTAT  63 63
HRR29_RS07875 1660015 .. 1660049 -  -6.7  -2.65766   GCAAACTGGATAGCA    TATCGTGCTAATGATT AAAA AATGAT-AGCACGATA     GATCTGTATGCTACC  53 205
HRR29_RS07870 NONE
HRR29_RS07865 1658825 .. 1658842 -  -9.8   -5.4505   GTGGGCAATAAAAAA             CCCGGC GCGGTG GCCGGG              TTATAGATAACGGCT 100 39
HRR29_RS07855 1657641 .. 1657659 -  -9.5  -5.03715   ATTACCCGCAAAAAA             GGCCGCC TACCT GGCAGCC             TCAACTTGAATGAGT 100 104
HRR29_RS07850 1657373 .. 1657386 -  -9.5  -5.24531   ATGGCCGATAAAAAA               CCCGC CGGA GCGGG                TCTATTCATCAGGTG 100 27
HRR29_RS07845 NONE
HRR29_RS07840 NONE
HRR29_RS07835 NONE
HRR29_RS07830 NONE
HRR29_RS07825 NONE
HRR29_RS07820 NONE
HRR29_RS07815 NONE
HRR29_RS07810 NONE
HRR29_RS07805 NONE
HRR29_RS07800 1652561 .. 1652578 -  -8.4  -2.75975   ATCGCGCAAAAAATT             GCCCAC GATGAT GTGGGC              TTTTCTTTTCCATGG  62 275
HRR29_RS07795 NONE
HRR29_RS07790 NONE
HRR29_RS07785 NONE
HRR29_RS07780 1650850 .. 1650866 - -10.1   -5.1356   CGCCAGCAATAAAAA              GGGAGCC TTA AGCTCCC              TGGTGATTAGTGCCT 100 41
HRR29_RS07775 1650579 .. 1650595 -  -7.9  -4.79949   CTCCCAAAAAAAGAA              GCCGCTT GTC AGGCGGC              CGTCACATCGGGTGA  84 52
HRR29_RS07770 NONE
HRR29_RS07765 NONE
HRR29_RS07760 NONE
        pncB 1647262 .. 1647280 - -11.7  -4.19799   AATAAATAATAAGAA             GGGAGCC ATAAA GGCTCCC             GTAAGCGCTTAACTG  95 34
        asnS 1645682 .. 1645707 - -11.9  -4.90002   CAATACAGAATAAAA         TAATGGCCAGC ATCT GCTGGCCATTT          CAGTCTTTTACCGAT 100 40
HRR29_RS07745 1643964 .. 1643979 - -10.4  -5.64274   TCACGCATAAAAAAA              CAGGGC CGAA GCCCTG               TTCATTAAGCATATA 100 58
        aspC 1642602 .. 1642618 - -10.1  -5.89921   ACCAGAATAAAAAAA              GCCTGCA TAA CGCAGGC              TTTTTTTATGGACGC 100 44
        elyC 1630591 .. 1630606 -  -4.6  -2.62184   GTCCGGTCGACAGCA              CTCAGG AAAA CCTGTG               GCCGCTGTGGTATCG  43 465
HRR29_RS07630 1614181 .. 1614201 - -15.5  -5.92399   GAAGAAAATAAAAAA            CGGGGCAAT GAA ATTGCCCCG            TAATATAGCCCAGAC 100 78
        focA 1612987 .. 1612999 -  -4.1   -4.3739   TACTGCCTGAGAAAA                CCATC AAT GATGA                TCGTCGCCACGCAGG  64 16
        pflB 1610594 .. 1610613 - -11.4  -4.57837   AGAGGGTGCTAAAAA            GGCCCCAC TGAC GTGGAGCC             TTTATTGTACGCTTT  95 68
        pflA 1609678 .. 1609713 - -14.2  -3.81488   CGTCTTTAAATAGAA    TATAAAAAAGCCCGGT TTTC ACCGGGCTTTTCTTTA     ATACATCACCTTGTG 100 23
        trxB 1594083 .. 1594096 -  -8.1  -4.38927   CGGGGAGACAATAAA               GGCGA CTTA TCGCC                GCCTTTATTTACGTT  81 60
        cydD NONE
        cydC NONE
         aat 1589569 .. 1589590 -  -3.7  -4.12043   CAATTAAGTAAAGAA           TTGC-GCGAT TAA AACGCAGCAA           AACAGTTTCGGCGCA  59 214
        infA 1589216 .. 1589242 - -15.2  -5.31275   CTGCAGCACAAAAAA         GTAAGGCCGGGA AAA TCCCGGCCTTAA         TTAATATTCATCTGC 100 59
HRR29_RS07515 1582900 .. 1582948 -  -2.1  -3.50393   CTCGACTGCACATAA CTCCCACAAACGCAGCCCGTCTG TCG CTGCCTGGGAGCGTATCTGGAAG AAATGAAATCCGGCC  47 458
        cspD 1579126 .. 1579158 - -13.6  -4.24123   GGAATAACCCGAAAA      TAAAAATGCCAGCC GATCG GGCTGGCATTTTGA      CTGCGGGATGTACAC 100 55
HRR29_RS07480 1574909 .. 1574946 -  -9.1  -3.01712   CCCTGCTGCGGAAGA   TGTTCTCCCGCGTGC TGTGGCTG GCACGCGGGAAAGCG    GATTAGCGCTGGGTC  67 28
        aqpZ 1572130 .. 1572154 -  -3.5  -4.66535   AAGCGGCAAAAGAAA          GCCGGGC GGCTACGCTTT ACCCGGC          TTGTGTCTACGTGGG  67 97
HRR29_RS07465 1571067 .. 1571079 -  -2.7  -2.59431   CTGTGCCAGAACGGA                GAAAA GGG CTTTC                TGCTACAAAATAGAG  41 94
         hcp NONE
         hcr 1568324 .. 1568350 - -10.1  -4.85599   GTCACCCGACAAAAA        GCCCGGT-GGCG CTGA CGCTTACCGGGC         CTACGATCGAACGCT 100 47
        poxB 1565936 .. 1565974 -  -2.7  -2.70525   GCTGCGTAAATCAAT  CATTTCACAT-CCCT-TTA TTT TAAGAGGTCATGCGAAATG  TTTTACCTGAGCCAG  41 28
        ltaE NONE
HRR29_RS07435 NONE
HRR29_RS07430 1562331 .. 1562350 - -13.6  -4.22407   CAGCAAAATGACAAA            CGGCAACC TTCG GGTTGCCG             TTTTTTTCTCATCGT 100 59
HRR29_RS07350 NONE
HRR29_RS07345 1543233 .. 1543258 -  -3.9  -3.51232   CTTGCTGGAAATTAA         CGAACTGATTG TGCA CCATCAGCGCG          ATATCAATATTTATG  51 193
HRR29_RS07325 1540695 .. 1540723 -    -9  -4.30719   GTCGGCGAGAATAAA       TGT-CGGCATTCC GCAT GAAATGCCGCACA        TTTTACGGGGGTTAC  83 59
        artP NONE
        artJ NONE
        artQ NONE
        artM 1537582 .. 1537605 -  -9.6  -5.78622   TTATGGCAAAAAAAA          GCGGATAACC AGAA AGTTACCCGC           ATTGATTAATCACAT 100 80
HRR29_RS07300 1536427 .. 1536438 -    -3  -3.40403   GGTCTGGCAGGAGAA                TGAA CGGC TTCA                 GGTCGAAGTGGCTGA  47 320
HRR29_RS07240 1525325 .. 1525343 - -11.7  -5.40464   CACCACAAATAAAAA             CGCCCTC CGGGT GAGGGCG             TCTTCGCATTACTGG 100 34
HRR29_RS07230 1522839 .. 1522875 -  -3.7   -5.4833   TCAGGCAACAAAAAA    CCCATCAACCTTG AACCAAAACGG CGGGGTTGATGGG    CTCCACAAATTGGGG  85 138
HRR29_RS07225 NONE
HRR29_RS07220 NONE
        arsC NONE
HRR29_RS07210 1519591 .. 1519623 -  -4.8   -3.1582   GGACTGGATGAAAAT     GAGCCAGACCAC-GC TGGA GCAGTGGTTCGACCC      GGTTACCACCCGCGC  47 152
HRR29_RS07200 NONE
HRR29_RS07195 1517113 .. 1517125 -  -4.7  -3.90291   ACGCGGTCAATTAAA                CGGTG CCT CCCCG                TTCAACACCTTCTCA  61 4
HRR29_RS07185 NONE
        ybjG 1514243 .. 1514269 - -14.4  -5.24129   CCTCGGGATAAAAAA         GTGAACCCCCGC AGG GCGGGGGCTCAA         GTGTAACCTGTCAGG 100 47
        deoR 1513258 .. 1513269 -  -5.8  -3.07994   GGTAAGTCGATTGAA                CAGC GTCC GCTG                 ATTGTAATGGAGGCG  49 221
HRR29_RS07165 1511255 .. 1511287 - -11.3  -2.80816   TGCTGACCGACGAGA     CGGACGGGCAG-CT GTTAAA AGTCAGCCCGTCCG      GTGCGTAATCAGGTG  74 34
        rimO 1505649 .. 1505682 -  -3.8  -3.66378   GATAGGGCAGTGAAA    TGTGCCGGGT--GGCG GCGA CGCCTTACCCGGCCTA     CAACAGAGGAGTGGG  54 45
        moeA NONE
        moeB 1497215 .. 1497234 - -13.6  -4.40237   GAGCACACACTAAAA            CGGCAACC TGAA GGTTGCCG             TTTGCTTTAACCTCC 100 32
HRR29_RS07090 NONE
HRR29_RS07085 1492949 .. 1492966 - -11.3  -4.74084   AAAGTAAAAGCAAAA             CGGCAAC CGAG GTTGCCG              TTGTTAGTGTTTTCT 100 83
HRR29_RS07080 1491977 .. 1491987 -  -5.4  -4.67234   ATGCAAGTTTAAAAA                 CTTG ACG CAAG                 CCACAGGACGGAAAA  74 80
HRR29_RS07075 1490363 .. 1490391 - -10.2  -4.46926   TAGCGCATTACAAAA        CCACGGCCTGCG CGTGC CGCAGGACGTGT        CGGTGATGAGCATTG  88 270
HRR29_RS07065 NONE
HRR29_RS07060 1485510 .. 1485537 -  -9.9  -5.98781   GAGAACTAAAAAAAA       GCCGGGT--GGCG GCTT CGCCTTACCCGGC        CTACGTTCTGTTCCC 100 83
HRR29_RS07050 NONE
HRR29_RS07045 NONE
HRR29_RS07040 NONE
HRR29_RS07035 NONE
HRR29_RS07005 1474147 .. 1474157 -  -5.4  -4.22748   CATGAAGAAATGAAA                 TGAC TGA GTCA                 GCCGAGAAGAATTTC  69 113
        ldtB 1470027 .. 1470044 -  -9.8  -5.97575   AACGGATAAAAAAAA             GCGGGC AACGAG GCCCGC              TTTTTTAATGCTTCG 100 44
HRR29_RS06975 1466663 .. 1466676 -  -3.1  -4.38219   AGAAGAGAAAAAAGA               CGATA CAAA TACCG                CTGGCACCATTGATA  64 488
        relB NONE
        relE 1464886 .. 1464905 -  -2.8  -3.21747   CGAGGCGATTATCAA            CGGC-ACGC TGA ACATTGCCG            CGCTGCTGCTGGCCC  45 431
        mntS 1455732 .. 1455751 - -10.7  -3.68366   TGACGGGAAAATGAA            GCGGCGT ACCGCA ACGCCGC             TTAGTGGGAAGGTTT  83 26
HRR29_RS06905 1453795 .. 1453813 - -14.6  -4.69549   AAGGTAAAAGCAAAA             CGGCAACC CCA GGTTGCCG             TTTTTAGTGTTTGTT 100 97
        rhtA 1451821 .. 1451834 -  -3.9  -4.19238   TGGGTAATTTTAAAA               TTGAT ACAG ATCAA                TCTTAATTGCTGGAT  59 158
         dps 1451122 .. 1451141 - -11.4  -4.13728   CATAGATGTGCAAAA            CCCTCACC GGAG GGCGAGGG             TTTGATAGAAAATTC  89 48
        glnH 1450011 .. 1450034 - -10.2  -3.90048   CGTGTTTCAAAAATA          GCAGGGGCGA AAGG TCGCCCCCGA           GTGAACGTCATTTTT  84 49
        glnP 1449319 .. 1449330 -  -4.4  -2.95448   TTAAATTCAATCACA                GGAT TTTC ATCC                 TTCTTTCAAGACGAC  47 9
        glnQ 1448561 .. 1448576 - -11.8  -5.00884   ATCTGGCGTAAAAAA              GCCGGG CAAG CCCGGC               TTAGCGTAAAGCGAT 100 44
        ybiO 1446240 .. 1446252 -  -6.2  -3.66178   CCGGGTAAGGTGAAA                GCCG CCACC CGGC                TCGGTTACAGCGTCG  64 30
HRR29_RS06860 1444748 .. 1444770 -  -7.7  -3.77639   GAAGGGAGAAGAGAA           CTGCACCCG TTGGG CAGATGCAG           TCTTGTGGAAGAGAC  69 44
HRR29_RS06855 1444309 .. 1444331 -  -3.4  -3.48395   ATGCGCTTTACAGAA           GCAATACG AAGGGCA CGTTTTGC           TACGCGTCTGGCTAA  51 94
HRR29_RS06850 1443748 .. 1443769 - -13.7  -6.02914   TTTAGACAAAAAAAA           GCCCGTCCA GTGG CGGACGGGC            AAGCAAGGGTAACAA 100 110
HRR29_RS06840 1441922 .. 1441961 - -11.6  -4.41348   TCTGTCTCAAAGAAA  GAGGAGATATTAACCTTC GCGT GAAGGCGAATATCTCCTT   ATTGATCGTATCAGT 100 36
HRR29_RS06835 NONE
HRR29_RS06830 1438663 .. 1438685 -  -2.6  -2.70932   GTCCGGTGTTAATCA           GTGACACTGC GCG GCAGCGTTAA           TAATGTTGGTGTCAT  41 0
HRR29_RS06825 NONE
HRR29_RS06820 1437089 .. 1437111 -  -7.6  -5.47218   CCCGAGGTAAAAAAA           CCGCCGGTCA AAC TGACCGCAGG           GCGCAAGAAAAGCCT 100 61
        cecR NONE
        hlyD NONE
HRR29_RS06795 NONE
HRR29_RS06790 NONE
HRR29_RS06785 1427576 .. 1427586 -  -2.4  -4.17048   CGTGCTGCAAAACAA                 CCTG CTG CTGG                 CCCTGGCGGGTCTGG  59 91
HRR29_RS06775 NONE
        clsB NONE
HRR29_RS06765 1424163 .. 1424179 - -12.3  -4.97461   AACAAACACTAAAAA              CGGCAAC AAG GTTGCCG              TTTTGCTTTTATTTC 100 34
        yvcK 1419165 .. 1419177 -  -3.4  -4.46212   CGCTGCAGCAGAAAA                TCCA CGAGC TGGA                AGGGCAGATGATGCA  66 201
HRR29_RS06720 1415653 .. 1415668 -  -3.9  -3.12351   GGGCTGGATAGCCAA              CGACG TGGTTG CGCCG               GGTAAACGACATCAG  45 147
        bioA NONE
HRR29_RS06690 1410052 .. 1410068 -    -8  -4.14392   CGTGAAGGGTTAAAA              TCCAGC CCGCT GCTGGA              GCAGGCGCGTCATGC  74 256
HRR29_RS06660 1402380 .. 1402409 - -12.3  -4.59853   CTAAGCGGCTAAAAA       CAAAAAACCTCGC GAAT GCGAGGTTTTTTT        ATGCCCGGTAAACGC 100 62
HRR29_RS06650 1400392 .. 1400404 -  -3.3  -3.52472   ATACGCGCAAATTAA                GAGCG TCT CGATC                ACCGCCTGATTACAG  51 35
        modE 1396607 .. 1396617 -    -4  -3.12895   TTTTGCAGCAACAGA                 TATC AGG GATA                 CGCACTGTCGGCGCG  49 54
        modF 1395083 .. 1395103 - -12.5  -4.63184   AAGTTATCTGAAAAA            GAGGAGGGC AGA GCCCTCCAC            GGTTAATCGACGTTA 100 28
        galE NONE
        galT NONE
        galK NONE
        galM 1390620 .. 1390637 - -12.7  -5.24129   GGCGCGCAGAAAAAA             GCCCTCC GGAG GGAGGGC              TGGATATTAATGTGG 100 32
        gpmA 1389645 .. 1389662 - -12.7  -5.72622   GGCACAAATAAAAAA             GCGCGGA AGGC TCCGCGC              TTTTTTTTATGCCTT 100 48
HRR29_RS06585 1387845 .. 1387862 - -11.3  -4.87389   TACTCCAAAAAGAAA             GGAGAGC CAGA GCTCTCC              TTTTTCTTACCGAAC 100 48
        zitB 1386807 .. 1386833 -   -10  -3.14051   GGATGTGGATTAAGA         GCGCGCGTGAGC GGG GTTCTCACGCGC         TTTCCAGCTAGTGGT  71 33
HRR29_RS06445 1362758 .. 1362777 - -12.2  -4.78029   GCAATAAAAGTAAAA            CGGTAACC CATG GGTTACCG             TTTTTAAGGTTTTCA 100 97
        kdpF NONE
        kdpA NONE
        kdpB NONE
        kdpC NONE
        kdbD NONE
        kdpE 1348483 .. 1348496 -  -3.9   -5.2853   TATTTAAAAATAAAA               TGAAT AGTT ATTCA                AAGCATAAACCGATA  81 23
HRR29_RS06375 1347986 .. 1348015 -  -3.5  -3.68351   TTTTGATGATTGAAA       TTCAGTC-CGCCCG GTG CGGATGAGTCTGAA       TTAAAATGAATGAGC  54 120
        speF NONE
        potE 1344315 .. 1344334 - -13.6  -4.99972   AGAAAACACTAAAAA            CGGCAACC CCTG GGTTGCCG             TTTTGCTTTTACCTA 100 38
        ybfF 1341035 .. 1341056 -  -8.7  -2.73483   ACGGCACGCCAACGA           CTGGAAGCC CGCA GCCTTCCAG            TCGCTTTCTTTTTAA  61 41
        ybfE 1340569 .. 1340587 -  -3.8   -3.4247   ATAAGGGCAATAATA             GCAGAACT GGC AACCCTGC             GGAAACAGCTATCGC  49 94
        fldA 1339819 .. 1339829 -  -5.4  -2.69598   ATGCTTATAAAAACG                 TGGT ATC ACCA                 ACAAACTTGCTCAAT  49 166
         fur 1339198 .. 1339215 - -12.7  -5.81412   TTTAGGCAAAAAAAA             GCCAGCC TTTC GGCTGGC              TCAGAGTATGAATCT 100 43
        nagB 1331855 .. 1331884 -  -2.7  -5.40072   CCCCGGTTAAAAAAA       GCGGCCGCCTCTT GTTG AAGAGGCGGTTAT        TCAATTACAGACCTT  79 30
        nagA NONE
HRR29_RS06295 NONE
        nagD 1328633 .. 1328650 - -12.7  -5.04601   GCCATAAATGAAAAA             CCACGCC CTGA GGCGTGG              TTCGGTATCAGATGA 100 33
        asnB 1326708 .. 1326728 - -16.9  -5.47218   TGTGAGGCAAAAAAA            TCAGGCCCC TGA GGGGCCTGA            TTGCGATCTGAGTGA 100 41
HRR29_RS06280 NONE
HRR29_RS06275 NONE
HRR29_RS06270 1326221 .. 1326236 -  -4.6  -3.07962   GGCGATACCCCAATA              CCGCGG AGAA CCGCAA               AATCGAAGAAATATG  47 39
HRR29_RS06265 1326111 .. 1326127 -    -3  -3.33815   ATGTGCTCTAACCAA             CTGAGCT ACGT AGC-CAG              TACTGCAATCTTCGA  47 41
HRR29_RS06260 NONE
HRR29_RS06255 NONE
HRR29_RS06250 1325784 .. 1325812 - -20.5  -5.29445   CCTGAACAACAAAAA        CAAAAAAGCCCGC AGA GCGGGCTTTTTTG        TTACTTAAGTGGCTG 100 35
        miaB 1322948 .. 1322968 -   -14  -3.88438   TGAGAGGAAATACAA            GGCCTGCC GGAAA GGCAGGCC            AGGAGGATTAAGGCT 100 33
HRR29_RS06235 NONE
        ybeY NONE
        corC NONE
         lnt 1318748 .. 1318777 - -17.9  -4.37886   GGAGTCTGGAGAAAA       TTGTCGGGTGGCG GCTA CGCCACCCGGCAA        CAGGAGGGAAGGTTA 100 38
HRR29_RS06215 1317397 .. 1317413 - -12.3  -5.94713   ACTCCAGAAAAAAAA              GGGTAGC AGC GCTACCC              TCGAAGATTGGTGAG 100 144
HRR29_RS06210 NONE
        gltK NONE
HRR29_RS06200 1315205 .. 1315228 - -15.4  -2.74514   TGAAAGCGTGAAGCA          GTGCGCAATC CGCA GATTGCGCAC           CGGGAAGATTAATGC  90 34
        rihA 1314108 .. 1314124 - -12.3  -4.67641   ATGGTAAAAGCAAAA              CGGCAAC CAC GTTGCCG              TTTTTAGTGTTTGCC 100 76
        leuS NONE
        lptE NONE
        holA NONE
        nadD 1308272 .. 1308282 -  -2.4  -2.54523   GTATACCTGAACTCA                 CGCC TGC GTCG                 GGACAAATGTCTCCG  39 216
        rsfS NONE
        rlmH NONE
        mrdA NONE
        mrdB NONE
        rlpA 1303244 .. 1303259 -  -3.2  -2.71011   ACCGCCGGTTAATTA              TTTCGC AACA GCGATA               AATGACTGAAGTTGA  41 7
        dacA 1301810 .. 1301840 - -13.5  -5.09426   CGTAACGTCAAAAAA       TAATAACTCCCAC GTCAG GTGGGAGTTATCA       GGATACTTAGTATAT 100 75
HRR29_RS06135 1301427 .. 1301445 -  -3.9  -4.53303   TATCCTGATACAAAA            CTGCGTCT CCGA AGACG-AG             GGACAAAAGGTGTGG  65 100
        lipB 1300743 .. 1300770 -  -3.4   -4.4448   AAAGCTGTAAATAAA        CAGTGGCCCGCCA AAT TATCGAGCCA-TG        TTGTATGATGTATTA  65 38
HRR29_RS06125 1299534 .. 1299553 -    -5  -3.53012   CTTGTGCTGGCTAAA            CCTGTCAGA AGG CCTGAC-GG            ATGATGCGGATGACG  56 10
        lipA 1298314 .. 1298330 -  -6.5  -5.75342   GCTTGCGAAAAAAAA              CCGGC TCATGAG GCCGG              TTTTTTTGTATTACT  93 60
        crcB 1296524 .. 1296540 - -13.7  -4.24123   GCAAGAATTTCAAAA              CCCGCTC ACT GAGCGGG              TTTTTTTCGTTTTGA 100 200
        dcuC 1293681 .. 1293694 -  -9.5  -5.05228   ATTAAAGCACAAAAA               GCGCC TACA GGCGC                TTTTTGGATATCCCT 100 49
         rna 1292420 .. 1292431 -    -3  -3.71607   GTAATATTACCGAAA                CAAA GGAA TTTG                 TCTGGAACCTGGCGA  52 408
         rnk 1291471 .. 1291490 - -12.2  -3.68619   GTGAATTTACGGAAA            GAGGATGC GGCT GCATCCTC             TGTGCAAAGCGGGTG  93 60
        uspG 1289409 .. 1289438 -  -6.3  -3.05343   GCTACACCTGCAATA       GCGAGAGGCCACC GAAA GGTGGCCTCTTTT        TTTATCTTACGACCA  55 27
HRR29_RS06050 NONE
HRR29_RS06045 NONE
HRR29_RS06040 1283072 .. 1283097 -  -7.5  -3.78934   TGCTTTGCAGAAGAA         GGACACGCCAG CGTG CTGGCCCATCC          GCAGCTTCGCGAGCG  63 522
HRR29_RS06030 NONE
        mtnC NONE
HRR29_RS06020 1280441 .. 1280458 - -12.7    -4.946   AGCAAACACTAAAAA             CGGCAGC TCTA GCTGCCG              TTTTGCTTTTACCTA 100 38
HRR29_RS06005 1277321 .. 1277347 -  -9.2  -3.54543   ATCGACCGGTGGAAA         CCGGTGCGCTGG TGC CCGCCGCGCCGG         AGAGAATGATGGACA  69 219
HRR29_RS05980 NONE
HRR29_RS05975 1270480 .. 1270501 - -12.3   -2.7263   AGGATGCTCGGAAAC           GCCTCTGCC GGGC GACAGAGGC            TTGCAGGGAGATTGC  78 43
HRR29_RS05970 NONE
HRR29_RS05965 1269492 .. 1269502 -  -6.8  -3.44924   CAAAGCAGGTAAATA                 CCTG GGC CAGG                 CCGCCAAAATGATGA  58 177
        fepB 1261114 .. 1261127 -  -9.5  -3.17075   GGCCCGGTAAGCGAA               GCGCC ACCG GGCGC                AGCTGTTACCCAAAG  71 31
        fepD 1258688 .. 1258718 -  -2.5  -2.96695   CTGGTGAGTAAACGA      CG-GGACGGGGC-CA TCA TGCGCCACCTCCGCG      TTTACGGCGTACCAG  42 8
        fepG NONE
        fepC 1256465 .. 1256479 - -11.4  -3.86194   AACTGGTCGGAGAAA               GAGGCC AAC GGCCTC               GACCCCGAGGTGCTG  81 461
HRR29_RS05885 1249116 .. 1249132 - -12.3    -4.946   AGCAAACACGAAAAA              CGGCAAC TCA GTTGCCG              TTTTGTTTTTACCTT 100 39
        entD 1248066 .. 1248092 -  -3.6  -4.64334   AACGTGGTAAGAAAA         CTCCATCACGAG TCA CTCGCTATGAGG         TCGCGGACGTTCGGG  70 312
        betI NONE
        betB NONE
        betA 1241080 .. 1241104 -  -7.8   -4.1891   GGGCGGGAAGATAAA          CTCCCTCTCC CGTAT GGAGTGAGAG          ATCCCCAGTCATTTT  73 481
HRR29_RS05845 NONE
HRR29_RS05840 NONE
HRR29_RS05835 1238934 .. 1238970 -  -4.7  -2.63568   TAAATAAAAATAAGG   GAGCGGTTTAAGAATT ATGAAA AATTCTTAAAT-GCTC    GTTTTTGATATATTC  47 219
HRR29_RS05830 NONE
HRR29_RS05825 1236230 .. 1236254 -    -7  -3.28791   ACGCCTGCGCCAGAA          GCTGGTGCGC AAAGG GCGCAACCGC          GACAGCGATATGCTT  56 191
HRR29_RS05815 1233912 .. 1233924 -  -3.4  -2.85712   GGAGAGGGAGAAGGA                GAAG GGCTA CTTC                GTGACGCGATCGTAC  44 19
HRR29_RS05810 NONE
HRR29_RS05805 NONE
HRR29_RS05800 NONE
HRR29_RS05795 1230381 .. 1230405 - -16.4  -3.04398   CCCGGCCTGGAAAAC          CCGCGCGGCG CTCGC CGCCACGCGG          TTTACCCCATCCTGT 100 27
        silC NONE
        cusF 1218595 .. 1218609 -  -3.6  -3.58231   AAAGAAGCCATACAA               TTTCTC GCT GAAAAA               TCAAAACACCTGGCA  51 120
        silB NONE
        silA 1214112 .. 1214132 - -10.4  -4.04927   TGAATCAGTAAAGAA            GGACACCC ACAGG GGGTGCCC            TTTCAGGTTCAGGAC  87 34
HRR29_RS05720 1213561 .. 1213589 - -13.2  -2.50492   GATTACCACGAATAT       CGCCGGCA-CAGG AGTG CCTGCTACCGGCG        TCCCGTTATCAGCCG  80 50
        silP NONE
HRR29_RS05710 1210772 .. 1210792 - -16.1  -3.35996   TACCTGGACTGATAA            CGGGACCGC GAC GCGGCCCCG            TTTGCCGGATTAATT 100 35
HRR29_RS05685 1205847 .. 1205859 -  -6.9  -3.13522   ACCCGCGCATCAACA                CCCAC CTT GCGGG                ATTCCGGCTCCCGGG  59 426
HRR29_RS05675 1204285 .. 1204316 - -12.2  -2.71011   ATGGGCTCGCAATCA      GCCAGACGGACTCG CAAT CCAGTCCGCCGGGC       TCACAATAACTGCAA  78 51
HRR29_RS05670 NONE
HRR29_RS05665 1201813 .. 1201824 -  -2.2  -3.69216   TTTTGAGGTAAAACA                CGGT AGGT ACCA                 GCCTGTTGCTGATCA  51 356
        pcoS 1197186 .. 1197199 -  -5.3  -2.75064   CGCGTGACTGAATGA               TGACA ATTT TGTCA                CCTTCCAGGTTTCTC  47 54
HRR29_RS05640 1196507 .. 1196524 - -12.7  -6.25741   AAAGAATAAAAAAAA             CGCTCCC GGAC GGGAGCG              TAAGCCAGTGACTTC 100 77
        rcnR 1194463 .. 1194491 - -11.9  -2.87564   CTACTTCTTCAGATA        GACCTACTTAACA GGA TACTAAGTAGGTC        ATCTCCTTTCTCGCG  77 342
        cysS 1187284 .. 1187306 - -13.4  -2.89007   AGAAAACCTAATAAT           TCCCTCTCCC TTT GGGAGAGGGT           TAGGGTGAGGGGAAA  82 42
        fimA 1181843 .. 1181860 -    -2  -2.77899   TGTGCGGAGGAATTA             CTCGTA TTTCAT TACGAA              GGTGGCGTCAGCGTT  40 5
        fimI NONE
        fimC NONE
HRR29_RS05540 1177583 .. 1177597 -  -5.6  -2.78032   TGGCGGGTAAAACAC               GCCAGC ATA GCTGTC               CGTAATTTTCATCGC  50 351
HRR29_RS05515 NONE
HRR29_RS05510 1172095 .. 1172112 -  -9.8  -4.60797   CCGGCAGATATAAAA             GCCCCG ATCTTG CGGGGC              TTTTTATGCTTATCC  93 81
HRR29_RS05505 1170801 .. 1170814 -  -2.3  -2.82635   ACTCTCAGGATCACA               GCAGG CCGG CTTGC                GTCATCAGCTCGATA  40 7
HRR29_RS05500 1169192 .. 1169208 -  -2.1  -3.17075   TGGCGGTTAATTCAA              GCATGTC ATA GCCCTGC              AATTTTTTTCGACTG  43 14
HRR29_RS05495 1168053 .. 1168072 -  -7.2  -4.81685   AGCAACTACGAAAAA            CCTCACGCA TTG TG-GTGAGG            TTTTATGAGCATGGT  82 117
HRR29_RS05490 1167584 .. 1167601 -  -4.7  -4.57341   AAGTGCGCGCAAAAA             TGACCCG TTGT CGGGCCT              TAGAATGTATTGAAT  72 163
HRR29_RS05485 1165329 .. 1165344 -  -4.7  -3.18264   TGCTGGAGGTAGCAA              GGGAT TGGGGC ATCCC               TGCCCCGGATAACGA  52 51
        pheP 1163584 .. 1163602 -  -3.8  -3.25204   GTATTCGCAAAGATA             TGACGC TGATGGT GCGCCA             GCTAGCGCCTGATGC  47 301
HRR29_RS05465 1160038 .. 1160048 -  -2.4  -4.20918   CTTAATGGCAATAAA                 CAGG CTT CCGG                 ATAACTACTGACCCG  58 52
HRR29_RS05445 1157034 .. 1157062 - -11.8  -3.89881   ATGAAGCGCCAGAAA       TATCCCCC-CCGG AATT CCAGAGGGGGATA        AATAAAGCAATCAGG  95 36
HRR29_RS05440 1156472 .. 1156486 -  -2.1  -3.92869   TTACTTACTGATAAA               TCACC GAGAA AGTGA               CGGCCGCACTGGCAT  53 0
HRR29_RS05435 NONE
HRR29_RS05430 NONE
HRR29_RS05425 NONE
HRR29_RS05420 1151936 .. 1151958 -  -2.1  -2.66692   TATTATTAGCATAAT           CAAAAAAAT CTACT ATTTCTCTG           TCCTTTCCAGCATTT  39 43
HRR29_RS05415 1150577 .. 1150614 -  -2.7  -3.66646   AATAGGGGATCGAAA   TCTATTTCAACCGCGTT GATT AACGCGGTTTTTATATA    TTCAGGTAAGTCATA  52 336
HRR29_RS05375 1140985 .. 1141001 -  -2.9  -2.84325   CTCGCTTAAACATTA              TTCCCAC CAC GCGCGAA              AGGTTTGCGTGGCGT  42 6
        ramA 1140538 .. 1140565 -  -9.9   -5.5074   TAAGCCAATAAAAAA       GCCGGGT--GGCG ACTT CGCCTTACCCGGC        CTGTGATGGCAATTT 100 68
HRR29_RS05360 1137034 .. 1137077 -  -2.2  -4.45485   AGCAGAGGGAGAAAA CCGGGCGGT-CCCCTCTCCCC TTA GGGGAGAGGGATAGGGTGAGG GGTAAGGTTTTGGTT  61 39
HRR29_RS05355 NONE
HRR29_RS05350 1132651 .. 1132675 - -14.4  -4.00348   GCGCAATCAATGAAA          TTGCCCTGCT GTTAA AGCAGGGCAA          GAGCGAGGCGCAGCG 100 52
HRR29_RS05340 1130646 .. 1130669 -  -3.7  -4.74103   TGCCGAACGGAAAAA          CAGCGGCCG TTAGCC CGGCCCCTC           GCTCCCCGCCGCCAG  71 11
HRR29_RS05330 NONE
HRR29_RS05325 1127609 .. 1127619 -  -2.4  -3.84674   ATTTCATGACAATAA                 CCCC AAC GCGG                 TCAGACCCTGCATCA  53 3
HRR29_RS05320 1126586 .. 1126621 -  -2.4  -3.22884   GGAGGAACGGATGAA    GGCGAGCCTGGTACGCG AAG CGCGTACG-GCCCCAGC    TTTTATGTTGCCTAT  44 141
HRR29_RS05285 1122177 .. 1122209 -  -3.2  -2.52464   GTTGCGCTTAAGCGA      CTGCGGGAGTGCTG TGACT CGGAACTTCCGCCG      TACCTGGTTGAACAG  39 418
        gstA 1119844 .. 1119860 -  -3.6  -3.76224   TTCTGATGGAGGAAA              CGGTTC GGATG GCACCG              TCTCAGCTCCGGGCC  54 250
        merR 1111349 .. 1111361 -  -3.4   -2.5166   CATTAAATAAAGCAC                GCTA AGGCA TAGC                CGACCCTGCCAGGCT  42 14
HRR29_RS05195 1110186 .. 1110197 -  -7.2  -3.02263   ACAGGTTCCTCAACA                GGCC GGTG GGCC                 GTTAGTATCATCAAT  57 95
        cadR 1107907 .. 1107930 -  -2.4  -4.78149   TTCAGAAGCTAAAAA          CCCCTTACAG CAGG CCGTAAAAGA           CGCTCAGGCGGCGCT  67 205
HRR29_RS05130 1097600 .. 1097621 -  -4.3  -5.19261   AAATTGACGAAAAAA           TCCGCTGGA CTGC CCCGGCGAA            TGTTAGAGAGCAGTA  79 383
        tesA NONE
HRR29_RS05090 NONE
HRR29_RS05085 1087901 .. 1087911 -  -6.8  -3.10796   CTTCAGCAGTGAACA                 GCAG CAG CTGC                 AGGAGAAATTAAGCC  54 389
HRR29_RS05070 NONE
HRR29_RS05065 NONE
HRR29_RS05060 1083997 .. 1084009 -  -3.3  -5.75945   ACGTGGCAAAAAAAA                CCGGC TTA ACCAG                CAAGGCAATCCGCTT  90 392
        copA 1081307 .. 1081353 - -12.5  -3.31564   ATACGATTAAACAGA CCCATACGCGCT-CCATGAA TGGAAAGG TTCATGCTAGCGCGTACGGG TACAAGGTTCAATCC  85 34
HRR29_RS05045 1080433 .. 1080445 -  -5.5  -3.35996   CACTTTGAGCGACAA                TCGGC TCA ACCGA                AGGTCTCCTTCGGCA  56 97
        ybaK 1079782 .. 1079799 -  -9.9  -5.47159   CGCGAACACAAAAAA             CGGTAAC GCCT GTTACCG              TTTTGCTTTTACCTC 100 64
HRR29_RS05030 1076631 .. 1076647 -  -5.1  -4.57882   GGTAAGAAGAAGAAA              CCCTTAT GGC ATCAGGG              TATCAGGTAGCCAAA  72 64
HRR29_RS05025 1074598 .. 1074626 - -16.9  -3.18766   CGCACAAGGTAAAAG        CAAAACGGCAACC TGT GGTTGCCGTTTTA        GTGTTTGTTCCCTCT 100 179
        priC NONE
        rsmS 1063926 .. 1063943 -  -6.9   -4.1711   ATCATCCCGAACAAA             GCGTTCG TGAC CGAGCGC              CTGATCAACTGGTCG  71 464
        acrA NONE
        acrB 1055674 .. 1055689 - -11.8   -5.0925   TCTGAAAATGAAAAA              GGCCGC TAAT GCGGCC               TTTTTATCATGTGGA 100 48
        tomB NONE
         hha 1054427 .. 1054438 -  -5.8  -2.61735   GGAACAGGTCAGAAG                GGGA ACGT TCCC                 GAAAAGCCGATGTGA  49 167
         maa NONE
HRR29_RS04930 1052919 .. 1052931 -  -3.3  -3.67597   CTGTTCATTGAAGAA                GGTCA CTA TGCCC                GTCATCTTGCCGCCA  52 332
HRR29_RS04920 1050579 .. 1050593 -  -3.6  -4.78237   TATGTTATAACAAAA               CATAAA GGA TTTACG               ATGAAACCCGATATC  71 426
HRR29_RS04905 1048486 .. 1048500 -  -4.3  -4.91109   CCCCCAGTAGAAAAA               TACTC AGGGG GAGTA               GAGCGTGGTATGCTT  73 334
HRR29_RS04895 1047544 .. 1047566 - -15.6  -3.17229   AGCTGACCATGAAGA           TGCGGCCACA GAG CGTGGCCGCA           GTCTTACGCCAGAAT 100 29
HRR29_RS04875 1041008 .. 1041036 -   -14  -4.21194   CCTGACCAGTGAAAA        CTGCTGACTGCA TATGT TACAGTCAGCAG        TTTTTATTTTATGAT 100 61
HRR29_RS04855 1039595 .. 1039607 -  -4.8  -3.14468   GTGCAGCAGACCGAA                GTGC CGGTC GCAC                CGCAGACCAATCAGC  47 106
        tesB 1037983 .. 1038000 - -11.3  -4.69549   AAGGCAAAAGCAAAA             CGGCAAC TTCG GTTGCCG              TTTTTAATGTGTATT  95 91
HRR29_RS04815 1030772 .. 1030789 - -11.3  -3.14683   AGACCCTTCCAGCAA             GCCAGAC TTCG GTCTGGC              TTTTTTTATTTCACC  77 31
HRR29_RS04805 NONE
        queC 1026857 .. 1026879 - -10.7  -3.96148   TTTTGCCAGGATAAA           GAGGTCATA CCAGT TATGACCTC           TCTTCCTACAATAAC  84 518
HRR29_RS04750 1016031 .. 1016055 - -20.1   -4.3739   CATGTTCTTATAAAA          CTGACCCGGTG ATA CACCGGGTCAG          AGAGCGGGATTAACG 100 35
        ampG 1014323 .. 1014333 -  -2.6  -5.88476   AAAATAAACAAAAAA                 TTAA CAA TTAA                 TTATCAATAAAAAGA  95 235
        cyoA NONE
        cyoB NONE
HRR29_RS04730 NONE
HRR29_RS04725 NONE
        cyoE 1009246 .. 1009261 - -10.4   -5.4833   TCAGTGAATAAAAAA              GGGTGC CGAA GCACCC               TTTTATTGACCTGTT 100 45
HRR29_RS04715 1007748 .. 1007764 - -13.7  -5.38047   GATTGATATAAAAAA              GCCCGGT TTA ACCGGGC              TTTTTTTCACGCTTT 100 32
        panE NONE
        yajL 1005349 .. 1005373 -  -3.5  -3.66178   TCGTTGAAGTTGAAA          CCGTGAGCG GTTTCGG CGCTAACGA          TGCGATTCTGGATAT  52 313
        xseB NONE
        ispA NONE
         dxs NONE
HRR29_RS04675  999885 ..  999907 -  -4.1  -4.37092   ACCCGGCCTACAAAA           GATGGGCTT ACTTA AACCCCACC           ACCGGATGCGGCTGA  64 10
HRR29_RS04645  995495 ..  995525 - -12.1   -3.8822   CATACGAAATGTAAA      TGTTAGCGGAGTGA CATT TCACTCCGCTAA-A       GGGAGGGTTATTGCG  95 33
HRR29_RS04640  994260 ..  994277 - -11.3  -4.81083   GTTAAGCAGTAAAAA             GCCAGCT CTTG AGCTGGC              TTTTTTTGCCCGGCG 100 150
        acpH NONE
HRR29_RS04595  986148 ..  986165 - -14.1  -5.66684   TAAGGCATAAAAAAA             GGCCCGC ATAA GCGGGCC              TTTTTCGTAAACCGT 100 46
        sbcD NONE
        sbcC  969921 ..  969938 -  -9.9  -4.69549   AAGGTAAAAGCAAAA             CAGCAAC GCAA GTTGCTG              TTTTTGGTGTTTTTA  93 98
        rdgC  967870 ..  967896 - -10.1  -4.88687   TGAAATAAAAAATAA        GCCGGGT-GGCG CTAA CGCTTACCCGGC         CTGCGTTTTGCCTGT 100 40
        proC  964268 ..  964311 -  -6.8  -4.61231   GTACAGGGCGAAAAA TG-CCGGGCG-C-GGCCG-CAC CGAA GTGGCCGCCTGACGCCCGGTCA GAAATCAGGATTTAC  80 30
        ddlA  956946 ..  956960 -  -4.2  -3.80625   TTTCGACAATGTAAA               GTCAGC CAT GTTGAC               CTCCCGTGGTATCAC  56 493
HRR29_RS04465  956433 ..  956447 -  -7.8  -3.14132   GCTTGGCTTCAGCAA               CAGCGA CAT TCGCCG               TCAGCTTGAGAAAGG  57 233
        ampH  951954 ..  951965 -  -3.6  -4.11216   GGGTTATTGCTAAAA                CGGC CTGT ACCG                 GTTTTTATTTGCCCA  62 372
        hemB  947352 ..  947381 -  -6.4  -2.70232   GTGAAGATTAGAGCA       GGCCGGGTAA-GG TGAAG CCGCTACCCGGCG       CTAGAGCGGATTAAC  53 36
HRR29_RS04425  945375 ..  945387 -  -6.9  -3.30124   GGCGATCTGGGATAA                CCGCG TGA CGCAG                CACTACGCCAATGCG  56 185
HRR29_RS04385  937175 ..  937191 -  -7.9  -5.81032   TAAGGCGAAAAAAAA              GGCGACA CAG CGCCGCC              TGGTGTGATCTATAT 100 51
HRR29_RS04380  935203 ..  935219 - -10.1  -3.32997   GGGCCAGAAACGGAA              GCGCCTG CGG CAGACGC              AGCGCATGGAGTAAA  69 118
HRR29_RS04370 NONE
HRR29_RS04365  932708 ..  932725 -  -5.6  -4.03234   TTTTGTTGATACAAA             CCCATT TTAATC AATGGG              TTAGGTGTTGCGGGT  66 299
HRR29_RS04360 NONE
HRR29_RS04355 NONE
HRR29_RS04350  929313 ..  929330 -  -4.1  -5.17507   AAAATCCAACAAAAA             CAATGGT TATC ACCTTTG              TGTACTGTTCCTATT  79 109
HRR29_RS04345  928279 ..  928293 -  -7.8  -3.88766   ATCCGAGACAGCAAA               CCACCA ATA TGGCGG               CGTGTGCTGGTTCCA  68 510
        phoE  913058 ..  913088 - -15.7  -3.31501   ATGAATCCCCGACAA       TAAAAAAACCGGC ATCAA GCCGGTTTTTTTA       TTTCACATCATCAGA 100 36
        pepD  908902 ..  908927 - -11.1  -5.00616   TGGGGTTGTAAAAAA         GCCCGGT-GGCG CTA CGCTTACCGGGC         CTACGTTTTTCACCC 100 73
HRR29_RS04185  900620 ..  900641 -  -8.7  -3.91084   TGACGGGCAACGAAA           CCTGGCAAA AGAT TATGCCAGG            CGAGTGGGTGCTATT  72 36
HRR29_RS04170  896569 ..  896585 - -10.8   -5.4505   TGTGGCAATAAAAAA              CCCCGC GCGAG GCGGGG              TTTGTATAAGCGAAA 100 45
HRR29_RS04165  895452 ..  895475 -    -8  -2.53015   ACAGGCGGCAATCGA          TGCCCCGCGC TGGC GCGTGGTGCA           GGGCAGGGAGGTGAT  53 276
        rnhA  886044 ..  886058 -  -2.8  -5.67063   GGCAGTACAAAAAAA               CCGA TTAGACG TCGG               GCTGATAGCCCGCAT  86 15
        gloB NONE
        mltD  883064 ..  883085 - -11.6  -5.80003   GGAATAAACAAAAAA           GGCACCGA GGGGAA TCGGTGCC            TTTTTATCTTTCGAT 100 48
HRR29_RS04080  878986 ..  879015 -  -9.9  -5.34555   GCAGACGATAAAAAA       GCGATCGCAGCGC TGGA GTGCAACGATCGC        CTGGTCAGCCCGGAA 100 94
        metN NONE
        metI NONE
        metQ  869189 ..  869212 - -14.6  -3.01918   TGACTGCACAAATGA          CAAGACGGGC ATAA GCCCGTCCTG           ATGATATTACACTGA  88 48
        rcsF NONE
        tsaA  867940 ..  867955 -  -6.8  -3.07043   TCGACGATTGGAACA              GGCTGA AACA CCAGCC               TGACACAAAAAAAGT  57 90
        proS  866165 ..  866180 - -11.8   -5.1675   TGAGCCATTAAAAAA              CCCCGC CTGA GCGGGG               TTTTTTGTTTAGCCT 100 34
HRR29_RS03990 NONE
         rof  863767 ..  863794 -   -15  -2.92475   TTGAGTGGCAGAAAG        CGTAACGGGCAGC CAG GCTGCCCGTTA-G        TGTCATCAGGATTCG  93 31
         map  839150 ..  839165 - -11.8  -5.17353   ATAGCCATTAAAAAA              GCCGGC ATTT GCCGGC               TTTTTTATCATTCAT 100 33
        glnD NONE
        dapD  835545 ..  835560 - -11.8  -5.76633   TCAGATATAAAAAAA              GCGGGG TTGC CCCCGC               TTTTTGTTATACCCG 100 42
HRR29_RS03865  835052 ..  835070 - -13.2  -4.93696   CGCAAACACTAAAAA             CGGCAATC AAA GATTGCCG             TTTTGCTTTTATTTC 100 34
        mtnN NONE
        btuF  828992 ..  829011 -  -2.8   -4.2123   TATCCAGCCAATAAA            CGAGCATC GTTA AATCCTCG             AAAAGGGTCTTATGT  60 40
HRR29_RS03835  828347 ..  828366 - -12.2  -4.99972   AGAAAAGACTAAAAA            CGGTAACC TTGC GGTTACCG             TTTTGCTTTTACCTG 100 34
        hemL  824577 ..  824588 -  -7.2  -3.53012   CGCTTGGCGGCGAAA                CCGC GCGC GCGG                 TGGGAATGGCGCTGA  60 433
        thpR NONE
        sfsA NONE
        dksA  811555 ..  811573 -   -16  -3.83155   TATCAACAGTAACAA             GGCGGGAG AGA CTCCCGCC             TTTGGAGTGTGTAAA 100 52
      gluQRS NONE
        pcnB  809202 ..  809227 -  -6.1  -2.88544   GCCGATGGCGATATA         CGCG-AGGGTCA TGC TGTCCCTTCACG         ACGCGGCGCGCGTTT  54 8
        folK  808633 ..  808646 -  -2.3  -4.16943   CCTGATAGCCCAAAA               GCGAA TCTT TGCGC                ATTCTAACAGTAACA  55 113
        panB NONE
        panC NONE
        panD  806504 ..  806535 -  -4.4  -2.62263   ATTCGCTGGAGACCA      TGTC-GCGGCTGATC AGC AATCAGCCGCAGGGA      TAGTGCTTAAGCAAC  45 32
         can  801866 ..  801881 -  -3.2  -4.13767   CCCGTGATGTGAAAA              TCCTGA AAGA TCTGGA               TGAAGATATTCGTGG  60 364
HRR29_RS03710  798997 ..  799014 - -11.3  -5.28414   GAACAAACACAAAAA             CGGCAAC CGAA GTTGCCG              TTTTGCTTTTATTTG 100 34
HRR29_RS03700  796804 ..  796829 - -12.7  -3.16556   AAACATGATAGCTAA         CTATAACCGTG GTTG CACGGCTATAG          GTTCAACAGGGGGGC  81 51
        speE NONE
        speD  795043 ..  795070 -   -12  -4.28747   ATGAAACAGAAATAA        CAGACCGGAGCA TCCC TGCTCCGGCTTG         CTCTTACACGGCCGG  95 29
HRR29_RS03675 NONE
HRR29_RS03670  789102 ..  789116 - -12.8  -5.58454   TTCAGATGAAAAAAA               GCGGCC AAT GGCCGC               TTTTTTTATGCGCTG 100 44
HRR29_RS03645 NONE
        aroP  779955 ..  779985 - -14.7  -3.68569   TGAGGGAGGTAACAA      CGCGCGGCACCCGC AAAA GCAGGCGCCGCG-G       AGAGAGGCTTAGTGT 100 34
HRR29_RS03635 NONE
HRR29_RS03630  777369 ..  777397 -  -2.3  -3.64236   ATTGAAACGCCGAAA        GCCGCTGTCTCCA TGG CGAAGAAAACGTC        GTTTGTGGTGGTGGT  51 99
        nadC  775025 ..  775048 - -16.8  -2.71924   GAGCGGGGCTGAAAT          TCCCCTCTCC GGGT GGAGAGGGGA           GAATGCGTTATTTGA  95 33
HRR29_RS03610  774598 ..  774616 -    -6  -4.60924   GAAAGTGGCTAAAAA             TTCTTCTG CTA CAGAAGGA             TAGTCAACCATTGGT  74 216
HRR29_RS03600  772865 ..  772875 -  -2.4  -2.83004   AATCAAAGTTAATCA                 CGCG ACC CCCG                 CCAGTACGCCAAGCC  40 12
HRR29_RS03595  771959 ..  771972 -  -5.9  -5.36441   TCTCGACACAAAAAA               CCGCC AAAG GACGG                TTTTTTGTGAACTAG  85 49
        ppdD NONE
        gspE  763364 ..  763374 -  -2.4    -4.431   TAGCGACTCAGAAAA                 GGGG GAT CCCT                 CACTGAGCTCATCGG  61 328
        coaE NONE
        zapD NONE
        yacG  759149 ..  759178 - -13.7  -5.63504   AAGTTCATAAAAAAA       CAAAAAGGCGCAG AAAT CTGCGCCTTTTTT        ATGGAAGTGACAATA 100 467
        leuL  731676 ..  731693 - -14.1  -5.67967   ACGAGCATAAAAAAA             CCCGCGC AGTG GCGCGGG              TTTCTAGTCTTACTG 100 49
        leuA  730057 ..  730069 -  -3.3  -2.62515   AATTCTTCGACATTA                CACGG TTT CCTTG                TTGTTCTCTTTATTC  43 10
        leuB NONE
        leuC NONE
        leuD  726911 ..  726939 - -12.5  -4.38712   GGGATCGGGATAAAA       CGCGGCCTGCAG AATGGA CTGCAGGCCG-G        AGGGTTATTTCATAA 100 30
HRR29_RS03390 NONE
HRR29_RS03385  725170 ..  725194 - -12.8  -3.95852   ATCGGATGAACGAAA          CGGAGCCCGG GAACG CCGGGCTCTG          TGAACCGTTTTATTC  95 35
        sgrR  721792 ..  721819 -    -7  -3.02461   GAACTTTTTTTAACA        CTTTGCACCTCA AGGT TGAGTGGCAAAG         GATTTTGAGCGACAG  57 167
HRR29_RS03365 NONE
        thiP NONE
        thiQ  718144 ..  718157 -  -2.4  -4.07568   CTGCCCGTCGCAAAA               TTCG TGGTGC CGAA                CATTATCGGCTGCGT  56 406
        araB NONE
        araA NONE
        araD  712398 ..  712418 -  -6.1  -5.18371   TCCCAGAAAACAAAA            CCAGGCC TGATTAT AGCCTGG            TTAAGATTTTAATGC  85 57
        polB  710026 ..  710038 -  -3.3  -3.64716   TCACGCGTCAAAATA                GGCCA AGT TGCCC                TGTAACCAGTGTAGC  51 5
        rapA NONE
        rluA  706281 ..  706309 - -14.7  -3.92832   AAAGGTTTCAAATAA        GAAAAAGCCCGAC GAT GTCGGGCTTTTTT        TTTAGAAGTCCACCG 100 27
        lptD  702841 ..  702851 -  -8.2  -3.35813   TTCCATTTCAATTAA                 CCGC AAA GCGG                 ATTACGTTGCAAATC  67 48
        surA NONE
        pdxA NONE
        rsmA NONE
        apaG NONE
        apaH  698461 ..  698490 - -10.7  -2.52795   AACGTCGTTAAGTGA       TTTTCCCTCTCCC GGCC GGGAGAGGGAATT        ACGTATCAGGAGGCA  70 31
        rpsT  682749 ..  682763 -  -8.5  -5.66684   GAAGGCATAAAAAAA               CCCGC GTTAA GCGGG               TTCTTTAAACAAGCA 100 55
        satP  676122 ..  676132 -  -2.4  -3.04461   CAGCCATCCTGAACA                 GCTG TTC CTGC                 TGTACGGCGTGGTGG  41 313
HRR29_RS03165  671607 ..  671639 -  -6.4  -3.72695   AGTCCTTGCAGGAAA      TTTAGAGCGACTTT AGCAA AAAATCGCCCTGAA      TTGATCGATAGCTGT  64 40
        yaaA  670789 ..  670806 - -14.1  -4.30014   GCCATTAATGCAAAA             CCCCGCC AGCT GGCGGGG              TTTGTTTTTATTGCT 100 33
        arcA  663100 ..  663115 - -11.8  -6.23545   TGGAAATAAAAAAAA              CGGCGC AAAT GCGCCG               TTTTTTAATGCGTTA 100 50
        robA  657494 ..  657523 -  -4.9  -3.31322   CGGAACGCGCCAGAA       CGCTGGGCATTAC CCAC GTGATCACCAGCG        ATTTAGGTCGCACAC  49 507
        yjjX  656758 ..  656787 -  -7.1  -4.58395   GGTATTGCTGAAAAA       CGCCGGATGACGGC TTT GCCTT-ATCCGGCC       AAAAAACTTACCGAT  80 33
        ettA  652524 ..  652541 - -11.3  -5.59879   TACAAACATAAAAAA             CGGCAAC CGAG GTTGCCG              TTTTGCTTTTATTTC 100 34
HRR29_RS03060  650163 ..  650175 -  -9.1  -4.19746   CCTACTGGAAAACAA                CACCC CAT GGGTG                GCCGACGGCATGCGC  78 299
HRR29_RS03040 NONE
        lplA  644481 ..  644499 -  -3.1  -4.09685   GTTGACGCGGCAAAA             GCGCT GGGCGTTGA AGCGC             GCGTGGGTAACATCT  58 362
HRR29_RS03010 NONE
        yjjW  637542 ..  637566 -  -2.7  -4.37658   AACTGGGCTATAAAA          TTGGCGTCGGT GGC ACCATCACCTA          TCCGCGCGCCAGTAA  62 252
        rsmC  630213 ..  630223 -  -4.6  -2.63182   CGTCAACAGAAAAGT                 GCGC GCG ACGC                 CTTGATTGCTGCAAA  45 109
HRR29_RS02955 NONE
HRR29_RS02950 NONE
HRR29_RS02945  629428 ..  629445 -  -4.1  -3.07113   TATCACCTTAGGCAA             TTCCTGT CATT ACGGGAA              AGGTAAAGGTCGATG  47 394
HRR29_RS02935  628154 ..  628164 -    -4  -2.76885   AATCTAAATGATAAT                 GATT GCC AATC                 CTAACTATTGCTCAT  46 83
        fhuF  627255 ..  627272 - -11.3  -4.55798   TAGGTTAAAGCAAAA             CGGCAAC TCAG GTTGCCG              TTTTTAGTGTTTGTT  95 91
HRR29_RS02920  625071 ..  625094 -  -8.2  -3.29511   CCGACTTTTTTATAA          CCTGTCTG TTGCGCGC CAGACAGG           CTCTGGCGCATCAAT  65 40
HRR29_RS02905  622515 ..  622532 -  -3.4  -2.81535   CCAGCAGAAAATCTA             TCACGC CCATCC GCGTAA              CCCCCAGAGTGTCAT  44 8
HRR29_RS02900  622052 ..  622069 -  -9.9  -2.85879   AAATAACACAAATAT             CAAACGC GTGG GCGTTTG              CGGTACAGCCACAGC  69 7
HRR29_RS02895 NONE
HRR29_RS02890  620830 ..  620856 - -13.1  -2.78371   TATATGGGTAATAAT         CACGCGTAAAG TATAG CTTTACGCGCG         GTGTAGCTGTTGTCG  82 17
HRR29_RS02885  620259 ..  620270 -  -7.2  -2.82602   GAGGAAAGGGAAGGA                GGGG ATTT CCCC                 GGTGGCGCTGCGCTT  56 91
        dnaT NONE
        dnaC  618842 ..  618856 -  -2.7  -4.56597   TGGCTCTCTCAAAAA               GGTCC GTTTT GGGCC               GAAGGGGTTCCAGTA  65 77
HRR29_RS02870 NONE
        opgB NONE
HRR29_RS02860  615103 ..  615137 - -10.8  -3.53012   TTCGCTGCGGCTAAA    GCGGTTTC-CACGCC GGTGAT GGCGCGTAAAACCGC     GACGGCCGATTCAGG  71 153
HRR29_RS02845 NONE
        hpaE NONE
        hpaD NONE
HRR29_RS02830  608739 ..  608754 -  -5.4  -3.68529   ACGGTATTACTTAAA              CAACGC GTGC ACGTTG               TTTTGTTTGTAATTG  61 1
        hpaH NONE
        hpaI NONE
        hpaX NONE
        hpaA  604678 ..  604705 -  -9.9  -3.53761   TAACCCTCTCCCAAA        GGGAGAGGG GACGGTTACT CCCTCTCCC         TTTGGGAGAGGGGAA  75 12
        hpaB NONE
HRR29_RS02800  602383 ..  602412 -  -8.6  -2.91395   AGTTTTTGTAGAAAG       CGGCGCTGGCC GGAAAAAAA GGCCAGCGC-G       AGGGGGGGATCACAC  62 35
HRR29_RS02795  601284 ..  601314 -  -8.8  -2.73124   GGTGAGCGGTCAAAG       GGGGCGACGAGCGG TTC CGGCTCGCCGCCAG       GGGGCGAAATTATGT  64 35
HRR29_RS02790  598900 ..  598924 -  -2.7  -5.03994   TTCCAGACAGAAAAA          GCCCGGCGA TGTGAGT CCGCTAGGC          TTATGTTTCCCTCAC  72 80
HRR29_RS02785 NONE
        yjiA  597646 ..  597679 - -14.1  -3.21912   GCTGTAAGTCATTAA     TTAACCTGAAGCAAC GTTC ATCGCTTCAGGTTAA      TAAATTACTGGGCAG  86 57
HRR29_RS02770  594972 ..  594983 -  -5.8  -3.40403   GGTGTTTCATCAGAA                GGTG ACTC CACC                 GCCTACGTATGCGCC  56 8
HRR29_RS02765  594615 ..  594630 - -10.4    -5.626   GAGGTCATAAAAAAA              CCTGCC AGCC GGCAGG               TTTTTTTTAAAGGGA 100 41
HRR29_RS02755  592305 ..  592316 -  -2.2  -3.61715   GACCTCCTTTAACAA                TCCG AGGT CAGA                 GTACGGCGCTGCAGA  47 43
HRR29_RS02750  591615 ..  591650 -  -4.7  -5.83211   GATCAAAACAAAAAA    TAAG-CAACGGGCGGC GTCAG GCTGCCCGCTATCTCA    GCGTATATTTTCCAG 100 23
HRR29_RS02735  589072 ..  589116 -    -7  -3.91897   CCGCTGATTGAGAAA GACGATGCCCGCGTGC-GCCA CGAG TCGCTGCTCTCCGGCACCGTC GCGACGCTAATATTC  66 508
HRR29_RS02700  582902 ..  582914 -  -3.3  -3.38522   TATGCACTCGAAAGA                GGCCA AAA TTGCC                GGCGAGCGCGAGCTG  47 306
HRR29_RS02690  581231 ..  581242 -  -4.4  -2.88579   CTAATTGGGCAGATA                TCTG ATTT CAGA                 GTAATATTTCAAGCG  46 21
HRR29_RS02685  580619 ..  580637 -   -11  -3.44051   TTTCCAGGATGATAA             CCCCACTG GTA CAGTGAGG             AGAGCATCATGGAAT  79 290
HRR29_RS02675  578856 ..  578870 - -11.4  -3.12351   TGCCGCTACACCGAA               CTCGGC CAG GCCGAG               CTGGGCGATGCGCTG  69 209
HRR29_RS02665  576060 ..  576076 -    -3  -3.89354   CTGTTAAACGAACAA              GTGAAA GCAAG TTCCAC              TGTGGAAAAGGACGC  54 229
HRR29_RS02660 NONE
HRR29_RS02655 NONE
HRR29_RS02650 NONE
HRR29_RS02645 NONE
HRR29_RS02640 NONE
HRR29_RS02635 NONE
HRR29_RS02630 NONE
HRR29_RS02625 NONE
HRR29_RS02620 NONE
HRR29_RS02615  561393 ..  561412 -   -15  -3.68351   TCCTTAGCAGGTAAA            GCAGCCGG TAAT CCGGCTGC             TATTTTATTATTGTG 100 33
HRR29_RS02605 NONE
HRR29_RS02600  559154 ..  559174 -   -14  -3.62591   TGCAGAAGTCTGAAA            GGCACCCG TTGAG CGGGTGCC            TGGAGGATTACTTAA  93 37
HRR29_RS02595  558417 ..  558430 -  -3.1  -5.00616   CTGGCGGCGAAAAAA               GAGCA CCGC TACTC                GCTGCCAAATACCCG  76 343
HRR29_RS02585  557566 ..  557577 -    -3  -3.39449   CCGTATGAAGATGAA                GTAT AGCG ATAC                 GTGACCGGGGCGGCT  47 60
HRR29_RS02580  556584 ..  556606 -  -2.7  -3.60475   AACGCGGACGGGAAA          GTGATCGTCG AGAT CGCCGAT-AC           CGGGAGCGGCATTGA  47 228
HRR29_RS02550  547499 ..  547513 -  -2.1  -3.40403   TGTTTTTCATCAGAA               TGCAA AGCAG CTGCA               GCCCAGCGCCCCCCA  45 5
HRR29_RS02545 NONE
HRR29_RS02540 NONE
HRR29_RS02535  544578 ..  544608 -  -6.2  -3.64703   GCTGGCGGAGCGAAA     GCGCCGGGT--GGCG GCTG CGCCTTACCCGGC-C      TGGAAAAAATTACAG  61 35
        trpS  542737 ..  542759 -  -5.6  -4.24364   TAAAGATATAAAGAA           TCCATGAATA TAG CATTCTTGGA           AGAATGATAAACGAC  69 146
HRR29_RS02520  542181 ..  542195 -  -4.2  -4.85782   GGTGCTAAAAAGAAA               CTCGTT TTC AGCGAG               GGAAAAAGTTTTCTC  73 188
HRR29_RS02505  540238 ..  540252 - -11.4  -4.31293   TGATATAGTAAGAAA               GGGCTG TCT CAGCCC               TTGAAAATATATTCC  91 19
        argF  527629 ..  527664 - -16.5  -3.71649   CGCGTAAACTGGAAA    TGATTATCTGCTGAA AAATAA TTCAGCAGATAATCA     CCATCTCAAGGTAAG 100 49
HRR29_RS02445  527048 ..  527062 -  -2.9  -3.33003   GAAGAGAAGCAGTAA               GATAT TTTTC ATATC               AGTAGTGCCTGTAAA  47 24
HRR29_RS02440  526534 ..  526561 -  -9.8  -3.00946   TCGTTGCACAAAGCA        GGCCGGGTAAGCG CAG CGC-CACCCGGCA        AGAAAGGCGCACTGA  70 71
        arcA NONE
        arcC NONE
        argF  522000 ..  522025 - -19.7  -3.53224   GATGTTCTCCTTAAA         CCCGGCGCACC CCGC GGCGCGCCGGG          CGGTGATTAGTCGCC 100 32
HRR29_RS02415  520527 ..  520576 - -17.2   -3.9122   CAGTTCCTGAAATAA CCGG-TGGCACCGCACCGATCCG TAGGC CGGATAAGCGCAGCGCCATCCGG CAAATCACAACAAGG 100 30
HRR29_RS02410 NONE
HRR29_RS02400  519811 ..  519828 - -12.7  -5.75342   GCCGGGCAAAAAAAA             GCCCCTC AAAT GAGGGGC              TCTGGGAATAGGTTT 100 13
        pyrB NONE
        pyrI  518331 ..  518358 -    -4  -2.78371   TACAGCGTTAAGAAT        GTTCCCGGCCAT TATA ACAGCCGGGATT         TCATTACCAACCTCA  46 42
        ridA  517878 ..  517893 - -10.4   -5.5604   GCAAGCAACAAAAAA              GGCAGC CTGG GCTGCC               TTTTTTTATCGCCAA 100 47
        treR  511143 ..  511156 -  -2.3  -4.11216   GCGTGACGGCGAAAA               TGGGA ACGT TCCCG                AAATCAGGCGAAGAT  55 64
        treB  509612 ..  509625 -  -3.8  -3.53091   ATGCGTTCCTGCAAA               TGCG AAGGGG CGCA                TCTGCGCCCCGAAAG  51 47
        treC  507921 ..  507942 -   -13  -2.76833   AAACAGTAAAGTAAG           CCGGGTGC TGAGCC GCACCCGG            TAGAGAGAATTACTG  82 35
        nrdD  505350 ..  505360 -  -2.4  -4.45083   GGGAGAGGGAGAAAA                 CCGG AGT CAGG                 CTTAGCAATGTGCTC  61 102
        nrdG  504453 ..  504471 -  -2.3  -4.08216   GTATGCCGGTGAAAA             CGGTCAC GATTA GCGACAG             CGAAGATGCGCTGAT  56 385
HRR29_RS02275  492756 ..  492782 - -10.1  -5.90981   GCAGAGTAAAAAAAA        GCCCGGT-GGCG CTTG CGCTTACCGGGC         CTACTTTCTTTTCTC 100 70
         fbp  490138 ..  490164 - -14.4  -3.13813   AAAACATATAAATGA         CCAGGGGAGCCA GAA CGGCTCCCCTGT         AGAGAGGCATTACGC  90 35
HRR29_RS02260  489571 ..  489593 -    -9   -3.7829   ATCAGATGGACGAAA           CCGCGCAGCA GAA TGCGGCGCTG           GTGCAGCAATCCTCC  69 99
         ppa  482536 ..  482552 - -10.8  -5.65927   CAGGGAAATAAAAAA              GCCCCG ACTCG CGGGGC              CTTCATTAACAGCAG 100 47
HRR29_RS02225 NONE
HRR29_RS02220  480989 ..  481012 - -16.8  -5.48825   CAGTACTGAAAAAAA          CAACGCCACC GTGA GGTGGCGTTG           TTTTTTTTATTCCTT 100 311
        msrA  474211 ..  474237 - -16.6  -5.24531   ATTTGGCATAAAAAA         GACCGGACAGCG TGG CGCTGTCCGGTA         CGGGCGACGATTTAA 100 51
HRR29_RS02195  473004 ..  473015 -    -3  -2.52543   ATGGTTGCCAAGTGA                TATG TTTA CATA                 TATAAATTTATAGTT  40 69
HRR29_RS02190  470455 ..  470466 -  -2.2  -2.90218   CGATGAAAAATCAAG                GCAG ATCG CTAC                 ACTTAATCAGGCTTT  40 154
HRR29_RS02185  469612 ..  469627 -    -9  -4.13767   TGGCTGATGTTAAAA              GGTAGC GTAG GCTACC               TTTTTTATTGCCATC  79 216
HRR29_RS02165  466656 ..  466667 -  -3.6  -4.29106   GGCGATAGGAAGAAA                CAGG GCAA CCCG                 CTTCCGCTTGAGTAC  62 508
HRR29_RS02155  462792 ..  462810 -   -16  -5.48825   CAGTAGTTAAAAAAA             CGGCTCCC AAT GGGAGCCG             TTGATGTTTGTAGAG 100 50
HRR29_RS02145  461490 ..  461507 -  -5.5  -3.55444   GGCTCATCGCTGAAA             TTCTGCC TGGT GGCGGAA              GGCCATGCGCAGCTC  55 193
HRR29_RS02135  458781 ..  458798 - -11.3  -4.97461   AACAAACACGAAAAA             CGGCAAC GTAT GTTGCCG              TTTTGTTTTTACTTA 100 34
HRR29_RS02125  456882 ..  456912 - -11.2  -2.95632   TATTAATAAATATGA      GCGGGCCGGGTAA GGGAAA TCACCCGGCC-GC       AGGAAAGAACGGTGA  75 46
HRR29_RS02115 NONE
HRR29_RS02110 NONE
HRR29_RS02105  451586 ..  451602 -    -8  -3.01712   GGCGGCGCTGGAAGA              TCAGGC TGCAC GCCTGA              ACGAAGCGGTGGCGG  56 238
        ytfE  449141 ..  449158 - -11.3  -4.69549   AAGGTAAAAGCAAAA             CGGCAAC TTCG GTTGCCG              TTTTTAGTTTTTCTA  95 38
HRR29_RS02080  445861 ..  445879 - -13.1  -3.57144   CTGCTCACGTTGAAA             CGCCGGC CTTGT GCCGGCG             TTTTGCTTTTTACAG  90 59
HRR29_RS02055  443706 ..  443722 - -10.8  -5.96219   TATTCACAAAAAAAA              GCCCCC GGGCA GGGGGC              AACGTCAACTATGGC 100 83
        bsmA NONE
HRR29_RS02040  441963 ..  441981 -  -7.4  -4.77757   TTGCAAAAACGAAAA             GCCACTAA AAA TAAGTGGC             TTTTATCAGGAGGGA  84 43
HRR29_RS02035  439695 ..  439709 -  -7.1  -4.72986   CAGCTTCAGCAAAAA               CTGCG TAAAC CGCAG               GAGGCACAGGGGCGG  84 211
HRR29_RS02025  436726 ..  436744 -   -16  -3.55988   GAGAATAAACAGCAA             GGCCGTCC ACA GGACGGCC             TTTTGTGTTTTCTCC 100 90
        queG  419316 ..  419330 -  -8.6  -4.28049   TCCAAAATTTGAAAA               GTGCTT CCA AAGCAC               GGACCACCCAAGCGG  79 495
        rsgA NONE
         psd NONE
        mscM  412884 ..  412903 - -13.6  -3.06796   CCTGACGGCAGTCAA            CCCTCTCC CGCG GGAGAGGG             TTGCCCCGCTTACCT  85 40
        frdA NONE
HRR29_RS01900 NONE
        frdC NONE
        frdD  408265 ..  408284 - -16.4   -5.0065   GATGCAGAAATAAAA            GGCCCGCC GGAT GGCGGGCC             AGAAGCGTCAGATGG 100 33
      blaACT NONE
HRR29_RS01875 NONE
HRR29_RS01865  403804 ..  403823 -   -15  -3.09834   TACGTCATGATTGAA            GGCGCAGC GCCC GCTGCGCC             TGATTTTTGCAGGCA  93 470
        epmB  401647 ..  401670 - -13.8   -4.6902   GTAGAATGTGAAAAA          CCCCCGGGCA GAAA TGCTCGGGGG           TTTTTCTTTTGGTCA 100 506
        yjeH  397901 ..  397920 -  -2.8  -3.30903   AAAATTTCCTGATAA            TGCAGC AGAAGATG GCCGCA             GGGGAAAGCCCGGCG  45 323
        aspA  395913 ..  395934 - -14.5  -5.93252   CCTAAAAAGAAAAAA           GGCACGTCA CAAG TGACGTGCC            TTAAGAAGCCTAGCC 100 48
HRR29_RS01810  394491 ..  394509 - -17.4  -3.95584   TGGTCATTAATGAAA             CGGGCCGC AGA GCGGCCCG             ATTTTAACTATTTTT 100 56
        cutA NONE
HRR29_RS01800 NONE
HRR29_RS01795  391306 ..  391319 -  -3.8  -3.13403   TCGTGCTGACGAACA               GCCA GCACTT TGGC                GTAAAAAATACCGTA  45 517
HRR29_RS01780  390068 ..  390084 - -13.7   -5.1417   GCAGAAAAGCAAAAA              CCCAGCC ATA GGCTGGG              TTCTTTAAATAGTGG 100 38
HRR29_RS01755  383433 ..  383447 - -12.8  -4.70887   TGAGTAATAAAGAAA               CCCGCC AAC GGCGGG               TTTTCTTTTATTAGC 100 36
        kdgT  380239 ..  380271 -  -8.4  -2.71924   GATTTTTGGCTAAAT     CTCTCCCCCTCTCCC CATT GGGAGAGGGAACG-G      TGCTGTGTGTTAATG  61 35
HRR29_RS01730  376056 ..  376079 -   -11  -4.08767   TGTAGTTCCCGAAAA          CCCGGTAAGCG AAG CGC-CACCGGG          CGGGTAAATCAGTTC  89 34
        yjdN  375540 ..  375563 -  -8.8  -2.79183   CGGAGTTTGATGACA          GGCGG-AGGCA GAG CGCCCACCGCC          CGAAAATTAGTGCTG  65 32
        phnC NONE
        phnD  373600 ..  373613 -  -2.3  -3.95073   TGGGAGAGGGAGAAA               GGCAC TACT GCACC                GCTTTATTCACGCTC  53 16
        phnE NONE
        phnF NONE
        phnG NONE
        phnH  370935 ..  370949 -  -2.7  -2.84812   ACGTACATCAGCACA               CCTCC ACGTG GGTGG               TCCGCGGGATTGCCA  42 3
HRR29_RS01690 NONE
        phnJ NONE
        phnK NONE
        phnL NONE
        phnM  366433 ..  366454 -  -2.9  -3.14564   CGAGGGCCCCATTAA           CCAGATGAG CCTT CCCATCAGA            ACACCCTTTTTCCCT  45 21
        phnN NONE
        phnO NONE
        phnP  364566 ..  364595 -   -10  -3.07895   GGCAGCTTGAAGACA       GACGCCGTCGTT TAGATG AACGTCAGCGTC        AGCTGGATGACGACA  66 137
HRR29_RS01640 NONE
HRR29_RS01635 NONE
HRR29_RS01630  358218 ..  358242 -  -9.9  -2.95472   AGAGGGGGAAATAAG          TTCCCTCTCCC TGT GGGAGAGGGTT          AGGGTGAGGGCATCA  70 54
HRR29_RS01625 NONE
HRR29_RS01620 NONE
HRR29_RS01615  355071 ..  355087 - -10.1  -4.11216   GCTGCAGCTGCAAAA              GCAGCGC CCG GCGCTAC              CGGTGATTATGTTAA  82 525
        fdhF  352409 ..  352429 - -11.9  -5.29846   AATCGGAAATAAAAA            GGGAGTGAA TAT CTCACTCCC            TTTATTCACTGATTA 100 51
HRR29_RS01600  350713 ..  350728 -    -4  -4.79949   TTGTCAAAAAAAGAA              TAAGAG GCTA CTCTCA               ACTTGTCGGAGTTGA  73 85
HRR29_RS01595 NONE
HRR29_RS01590  349662 ..  349689 -  -9.9  -4.20696   CCAGTAATGTTAAAA       GCCGGGT--GGCG GCTT CGCCTTACCCGGC        CTACACAAGCCGTAG  87 73
         acs  345903 ..  345924 -  -5.7  -3.16564   GGGTGAGGGGAGGAA           GGTGCGGTC TGAT GCCCTCACC            CCAGCCCTCTCCCAC  54 59
HRR29_RS01575 NONE
        actP  343560 ..  343570 -  -8.2  -3.53012   CTGGCGGCCGCTAAA                 CCGC TCG GCGG                 GCAGCCGGATCTGGT  62 317
HRR29_RS01555  341510 ..  341524 -    -7  -2.71712   CTCCCGGCGGTAAAT               CGCCGC TTC GCGGTG               CCCTCAGCTTATTCC  55 248
        soxS  335631 ..  335649 -    -9  -4.13014   TGGATATTCTGAAAA             TCGATAAA TCG TTTATCGA             TACCTTAACGACCAA  78 249
HRR29_RS01520  333336 ..  333353 -  -7.7  -5.79595   GCTGAAAACAAAAAA             CCCAGAC TAGC ATCTGGG              TTTTTTTATTCCGGA 100 46
        uvrA  329504 ..  329518 -  -4.2  -4.07568   CGGCGTCGCTGAAAA               CCAGCC CTG AACTGG               CGGATTTGCTACGTC  60 214
HRR29_RS01485  325872 ..  325889 - -11.3  -4.56597   TCGCTCCTGGAAAAA             GGGCTAC CCGG GTAGCCC              CTGCGTTACGGAATC  95 65
HRR29_RS01480 NONE
HRR29_RS01475  324810 ..  324825 -  -2.6  -3.45366   TGTTGAATTAACTAA              GAAATA GCTT CATTTC               CGCCTCGCGGCGTCG  47 2
HRR29_RS01470  324256 ..  324281 - -11.3  -2.71144   CATCCTCTGCAAGGA         TAAATCCCCTC GGAA AAGGGGATTTA          TTATCGTAACGGGCG  73 45
HRR29_RS01465 NONE
HRR29_RS01460  323502 ..  323527 - -13.4  -5.07652   TGCGTTAAAAGAAAA         GCGCAACAGA TGGACC TCTGTTGCGC          TTTGTTTTTTTAACG 100 35
HRR29_RS01450  321371 ..  321402 - -15.3  -2.89191   TGAGACTCGCAGATA      GTCGTCCAACGGCA TTAGC TGCCGTTGGACG-C      GTAACGCTTATTTCA  93 33
HRR29_RS01435  317764 ..  317783 - -13.6  -5.25976   AACTAAAAAAAGAAA            GGGCTTCC CACG GGAAGCCC             AATTTCTTTTTGGGG 100 42
         zur  313232 ..  313247 -  -7.6  -4.35042   TCCAGCAGAAAAGAA              CGTAAC GGAC GTTACG               ACCCGACGCTTAACT  76 337
        plsB  308006 ..  308034 -   -11  -4.42235   AAGGCTCAAAAATAA       GGCCTGGT-AGCG TTAA CGCTTACCGGGCC        TTTATATTATGCAGA  95 86
        yhhY  302029 ..  302040 -  -7.2  -3.28712   GCTGCGCGTCGAGAA                GGGC TTTA GCCC                 GGACACCATCAAGCT  56 265
HRR29_RS01345  299866 ..  299897 - -18.8  -4.17556   TACACGGTTAACAAA      CCCCAGCGC-GCAGC CGA ACTGCTGCGCTGGGG      CGTGGACAGCATCTG 100 73
        panM  288851 ..  288882 - -10.8  -3.05384   GGCTGCGTTATTCAA      CCCCGGTCACTTAC TTAT GTAAGCTCCCGGGG       ATTTCATAACTTGCC  73 123
        rsmD NONE
HRR29_RS01250  280503 ..  280515 -  -5.5  -3.34233   CGAGAAGGCGGATAA                CGATG CCG CACCG                CTGATGCAAAAGCGC  53 332
HRR29_RS01240  279618 ..  279637 - -12.2  -2.95223   TAACCGCAGCATACA            CTCTGGAG TCGA CTCCAGAG             TCAAGCGCTATTTAG  80 37
        zntA  277318 ..  277345 -  -8.5  -5.24531   ATGTCTTATAAAAAA       GTCGGGT--GGCG GCTT CGCCTTACCCGAC        CTACGAGTTAGCAGG 100 81
        malE NONE
        malF NONE
        malG  267935 ..  267954 - -10.6  -5.80364   ACGCGAATAAAAAAA            TGGCGGCC CGGA GGCCGCCT             AACAACAGTCACAAG 100 98
        lysC  259825 ..  259842 -  -9.8   -4.7497   TTTAGTTATGAAAAA             GCCGGG TCTGTG CCCGGC              TTATAGGTATTGTTT 100 57
        panS NONE
HRR29_RS01150  258504 ..  258521 -  -6.9  -4.85782   GGGCGCAAAAAGAAA             GGGCGCT GATT AGCGCCT              TCCACGGGTAGACGT  82 17
HRR29_RS01140 NONE
HRR29_RS01135  256409 ..  256434 -  -5.3  -3.02144   CGAGCTGGCGGAAGA         GGAGTCCCGCC GCTG GGCGGAAATCA          TCGAGATGTCGCTTA  49 441
        iclR  249913 ..  249938 -  -2.6  -3.41988   TGCCATTGAAGAATA        CGGCAACGC-GA TTCG CCAGC-TTGCCG         CCGCCAATATTTTCC  46 485
        purH NONE
        purD  235732 ..  235755 - -12.4  -2.78679   GTTTTTGATTTAAAT          CCCCTCTCCC TTGA GGGAGAGGGT           TAGGGTGAGGGTGAG  79 50
         rsd  230725 ..  230745 -  -7.6  -5.18726   CTCCGACAAGAAAAA           TC-CCCCTC GTGA GAGGGGCGA            ATGGTTGTAAATTAC  91 59
        thiC NONE
        thiE NONE
        thiF  227266 ..  227276 -  -2.4  -3.82202   CATCGTTAAACAGAA                 TGCG CAT CGCG                 GCCTCCGCATACCGG  50 5
        thiS  227068 ..  227087 -  -2.8  -3.18728   ATCGGCAATACGTAA            CATCTCAG CCCC CTGCGATA             ACCTGAAACAGCAGG  45 10
        thiG NONE
        thiH  225093 ..  225118 -  -7.5  -5.55769   TGTGACAATAAAAAA         CCGGACGATCG CTGA CAACCACCCGG          TTTTGCCTTTTCGTC 100 83
HRR29_RS01000 NONE
HRR29_RS00995 NONE
HRR29_RS00990  222456 ..  222469 -  -9.5  -5.55769   CCCGACAATAAAAAA               CCCGC CTCG GCGGG                TTTTTTTACATCTGT 100 47
        coaA  207008 ..  207022 -  -8.5  -5.68023   GCATAACGAAAAAAA               CCGGC GCTAA GCCGG               TTTTTTTATGTCTGC 100 45
         tag NONE
HRR29_RS00865  195193 ..  195215 - -14.2  -2.66695   GTGCTGACCAAAGAT           CTCCCCAGCT CGA AGCTGGGGAA           TGGCTGCGCAGGGAA  78 82
HRR29_RS00855  192126 ..  192143 - -11.3  -4.77036   TGCCACCACTAAAAA             CGGCAAC GAGC GTTGCCG              TTTTGCTTTTACCTA 100 38
HRR29_RS00850  190963 ..  190979 -    -5  -3.72395   ACAAGGGAAAATTAA              CGCGCC GTGGA GCCGCG              AACGATCAGCTCGCC  59 5
HRR29_RS00845 NONE
HRR29_RS00840  189121 ..  189147 -  -7.8  -2.57423   AGAGGGAGCAAGTCA         TTCCCTCGCCCC TCT GGGGAGAGGGTT         AGGGTGAGGGGGATG  58 42
HRR29_RS00835 NONE
        ghrB  186693 ..  186708 - -11.8  -4.89729   CACAAAATTCAAAAA              CCCGCC TTCT GGCGGG               TTTTTTCATTTCTAT 100 37
HRR29_RS00815  184839 ..  184858 - -16.4  -3.95435   GCCTTTAAAACACAA            GCCCCCGC AAAG GCGGGGGC             ATTCAATCTTCACTA 100 38
HRR29_RS00805  181990 ..  182003 -  -9.5  -4.65838   TACACATGCTAAAAA               CCCGC TTCG GCGGG                TTTTTTTATGGGTCT  93 78
HRR29_RS00785  176857 ..  176872 -  -2.5  -4.95484   GACGATTAAAGAAAA              CCGCA TCTTTG TGCAG               GATGAGAATATCTGG  74 480
        xylF  171522 ..  171555 -  -3.8  -3.56958   GGAAGAACAGTACAA    CGTGATGC-GCCCCCGC AGA GCAGGGGCCGCG-C-CG    GATTACAGTTCGCTC  51 28
HRR29_RS00755 NONE
HRR29_RS00750 NONE
HRR29_RS00745  167545 ..  167563 - -14.6    -5.055   GTAATCTCGAAAAAA             CGCCTTCC ACT GGAAGGCG             TTTTCTTTTCTATAT 100 35
HRR29_RS00735  164291 ..  164332 -  -4.4  -4.07885   GACCCTCTCCCAAAA GGGAGAGGGGGAAAAG-ACG GCGC CGTGCGGTTCCCTCTC-CCC TGCGGGGAGAGGGTT  61 57
        avtA  162837 ..  162864 - -15.8  -4.01184   ATAGATCACGATAAA        TTAAGGCTCTTC ATCC GAAGAGCCTTAA         TATTTAACAATTGCC 100 29
HRR29_RS00725  161368 ..  161388 - -18.3  -3.14132   GTGTCGCTGTACGAA            GCGCCCCTG AAG CAGGGGCGC            AGAAAGGCAATAACC 100 73
HRR29_RS00720  159554 ..  159564 -  -2.4  -2.52464   GGCCTGTCCAACCCA                 CGCG TTG CGCT                 GCGTTGACCCTGCCA  38 59
HRR29_RS00705  156903 ..  156930 -  -9.9  -3.55444   TTCTGATGCGCTAAA       GCCGGGT--GGCG GCTT CGCCTTACCCGGC        CTACATGGACAGCCA  75 385
HRR29_RS00695  154827 ..  154842 -  -4.6  -2.72991   GGAGATTGCCAACGA              CACGCC GTAT GGCCTG               GGAGCCGGCGTCTGG  44 253
HRR29_RS00660 NONE
        mtlD NONE
HRR29_RS00650 NONE
HRR29_RS00645  142842 ..  142853 -  -5.8  -2.78384   CTCCTGGGGACCAGA                CAGC CTGC GCTG                 CGGGTGAGTCTCCGC  50 272
        lldP NONE
        lldR NONE
        lldD  139159 ..  139182 -   -11  -5.00616   TTTTGGCGTAAAAAA          GCGCCCGA GGGGAAAA TCGGGCGC           GTGAGAAAGGGGGAT 100 54
HRR29_RS00625  137643 ..  137670 -  -8.4  -2.74756   AAACGATGTTAAGCA        TGCTGCCCCC TTAATTGC GGGGGCAGAA         TAGCAGAAAAGAGAG  61 44
        trmL  137055 ..  137100 - -10.4  -2.62184   TGCCGCCGCATACCA CCGCCG-CTGGCGTACCGGCG CGCAT CGTCGGTAAACCAGACAGCGA TAAGCCTTCCATGGA  62 95
        gpmM NONE
        envC NONE
HRR29_RS00580  129995 ..  130023 - -12.6  -5.88471   CATCAGGAAAAAAAA       GAGTCCGT-TGCT AACG AGCAGACGGACTC        TCAGATTGCGAAATA 100 45
HRR29_RS00570 NONE
HRR29_RS00565  126879 ..  126893 - -12.8   -4.9445   ATAAGTAATCAAAAA               GGGGCC TCA GGCCCC               TTATTTTATTGCTTC 100 31
        rfaD NONE
        rfaF NONE
        rfaC NONE
HRR29_RS00535  120316 ..  120358 -  -2.8  -3.61715   TATGCGCGGCAATAA TGATGCTTAGAAAAGCCA TAATAAT TAGTTTCCCTGAGCATCA AAGGAGTATGCGTCT  49 7
HRR29_RS00530 NONE
HRR29_RS00525  118201 ..  118223 - -16.4  -5.64304   CAATACAAGAAAAAA           TAATGCCCGC CAG GCGGGCATTA           TCATTAGCGTTGCCT 100 29
        rfaQ NONE
HRR29_RS00510 NONE
HRR29_RS00505 NONE
HRR29_RS00500  112810 ..  112822 -  -7.7  -2.89564   CTCTTATGCCAGATA                CCGTT TCA AACGG                AAATAACGTCGACCC  59 1
        waaA NONE
HRR29_RS00490 NONE
        coaD  110156 ..  110170 -  -9.2  -3.15663   AGTGATTGCCACGAA               GCACGC CCA GCGCGC               CACGTTCTACTGCCG  64 59
       coaBC NONE
         dut  106116 ..  106143 -  -2.6  -2.91264   GCTGGCATCCACACA        GCGACCGCAAAC GGGC GTTTGCGGTTTG         TTATTGCATTATGAC  42 68
        slmA  105006 ..  105051 - -11.1  -3.85698   GGCCCGGCCTATAAA GGTATTCCGATTGCGACCACCA CCG CGGTGG-CGCTGGCGGAACACC ATGACCGCGACGTGC  81 443
HRR29_RS00435  102983 ..  103005 - -11.3  -2.70121   ATTAGAAATAGTAAT           GGGTGGTGC TGTCG ACACCACCC           GAAAAGCATTACTCG  73 34
HRR29_RS00430  101679 ..  101691 -  -5.5  -4.17698   ACGGACAGACATAAA                CCAGA GCC TCCGG                CCTCACGCTATCATG  66 525
         gmk   99631 ..   99646 -  -3.3  -2.78816   TGACTGGGCATGATA              CTGAA AGTGGG TTCAG               TCTGCCAACAGTTTG  44 22
        rpoZ   99295 ..   99305 -  -2.4  -2.83082   TCAAACAGATACAAG                 GGCG ACC CGCA                 GGTTTAATTAACGAC  40 33
        spoT NONE
        trmH NONE
        recG NONE
        xanP   91541 ..   91572 - -13.9  -2.90571   AATGGTGTAATTAGA      TGTCACGGCAGGCA TTGGC TGCCTGCCGTGA-A      GAGGATCAGTTCTTT  84 31
HRR29_RS00385   89724 ..   89752 -   -11  -2.71791   ACCCTCTCCCCAAAG        GGGCGAGGGAAT GGTTT ACTCCCTCTCCC        TTTCAGGGAGAGGGC  73 28
HRR29_RS00370   85210 ..   85228 -  -7.4  -3.38162   AGTTAATAAATGCAA             TGGCTGTC ATC GATAGCCA             GGCTGTTAGTGGCAA  64 386
HRR29_RS00365 NONE
HRR29_RS00360   84491 ..   84508 -  -2.1  -3.98484   AACTTAACGCAGAAA             TCATA-CT TTT AGATATGA             AATGCAACGCGTTTT  53 16
HRR29_RS00330 NONE
HRR29_RS00325   78245 ..   78270 - -15.5  -3.20349   TCCTGAAAGCTAAGA         CAGGCCCGG-CT CGC AGACCGGGCCTG         AGGATTACGAATAGG 100 30
HRR29_RS00320 NONE
HRR29_RS00315 NONE
HRR29_RS00310   74483 ..   74495 -  -4.1  -2.83382   GAGGAAACGCTAAAC                GCATC ATA GATAC                TCCGTTGTCCAGGTG  46 16
HRR29_RS00305   73100 ..   73114 -  -5.6  -4.07568   CGCCCGTCTGGAAAA               CCGCTT TGA ACGCGG               GCTGGAGCAGGTAAC  64 387
HRR29_RS00295   72102 ..   72115 -  -3.9  -4.46212   TCCCGCAGGAGAAAA               TTATC AGAG GATAA                TCACTTCAAGCGATA  65 15
        uraH NONE
HRR29_RS00285   70453 ..   70477 -  -4.3  -5.22943   ATGAAATGCAAAAAA          GAGACGACA GTGAGGA TGTCGTCTA          AACGGGGTACTGCTT  79 81
HRR29_RS00280   69049 ..   69063 -  -2.9  -3.35522   TAAGTTCTGGAAAGA               TTGAT TTATC ATCAA               AATCATTAATTTATC  47 260
HRR29_RS00240   50881 ..   50899 -  -3.1  -5.24449   CAGAAATGTAAAAAA             GGGGAAT TACTT ATTCCCG             CTAATTATTCATATG  75 44
HRR29_RS00235   49637 ..   49665 -  -3.1  -3.73647   GCGACGCACGAAGAA        GCGGGAAAACA TCAGGCT TTTCCTCCCGC        AGCTTTCATCTCTTC  52 8
HRR29_RS00230 NONE
HRR29_RS00225   45095 ..   45115 -    -4  -3.29704   TTCCCATGAAATATA            TCGTTACA TTCAG TGTAGCGA            CGCCAGCCGAAAGTA  49 84
HRR29_RS00220   44714 ..   44758 -  -6.4  -3.38314   CGGAAGCGTTAAACA TGTTTTCCAGGCCGGGTAAGCG CAG CGC-CACCCGGCG-GGAATTCA ATAATCTTCCATACA  59 23
HRR29_RS00210 NONE
HRR29_RS00205 NONE
HRR29_RS00200 NONE
HRR29_RS00195 NONE
HRR29_RS00190   38562 ..   38579 - -11.3    -4.946   AGCAAACACTAAAAA             CGGCAAC TTGC GTTGCCG              TTTTGCTTCTACCTT 100 43
HRR29_RS00185   37480 ..   37496 -  -5.8  -4.11216   GGGCGAGGGTGAAAA              GACAGC ACCGA GCCGTC              CCCTCTCCCCTGTGG  66 70
        tisB   26032 ..   26053 - -17.3  -3.72576   TCCCTCGTTATTAAA           GAGGGGCGG TTGC CCGCCCCTC            TCAGGTGCGACTTGA 100 48
HRR29_RS00120 NONE
HRR29_RS00115   24646 ..   24663 -  -7.7  -4.08958   ATTTGTAAACAAGAA             CGGCAAC TAAT GTTGCCA              GTGATTTACGCCAGG  73 31
        emrD   23280 ..   23298 - -13.1  -4.07568   GCCCGTTTGTGAAAA             GCCCGGC GAGAA GCCGGGC             CATCATGCGGTTAAA  95 36
        dsdX NONE
        dsdA   18334 ..   18365 -    -8  -3.63627   TTTGTACAGCCGAAA      GCGATGCGGGATAAG TTC CTGATCGCGC-TCGC      TGTTCTCTCGCTGTC  66 121
HRR29_RS00065   13560 ..   13579 -  -2.8  -3.02511   TTGACGGTGGGAATA            CTGGCG CGGATGTT CGCCAA             AATGAACTACCTGAC  43 186
HRR29_RS00045   10283 ..   10319 -   -16  -2.95298   TGGATGGAGGAGACA   GC-CGGTTTCCGTCAGC TTTG GGTGACGGAAACCGCGC    AGTACTAGCGTGGAG  93 30
HRR29_RS00025    6037 ..    6059 -    -9  -2.64925   ATACCGCACGATAAC           TGGCCGCGCT TTT AGCGCGGCTT           TTTTATGGGCGCTGG  64 14
