locus-tag	class	description
JCP62_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JCP62_RS00010	COG0592	DNA-directed DNA polymerase activity
JCP62_RS00015	COG2501	S4 domain
JCP62_RS00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JCP62_RS00025	COG0187	DNA topoisomerase II activity
JCP62_RS00035	COG0360	Binds together with S18 to 16S ribosomal RNA
JCP62_RS00040	COG0629	single-stranded DNA binding
JCP62_RS00045	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JCP62_RS00055	COG0359	binds to the 23S rRNA
JCP62_RS00060	COG0305	Participates in initiation and elongation during chromosome replication
JCP62_RS00065	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JCP62_RS00075	COG0488	(ABC) transporter
JCP62_RS00085	COG0028	Belongs to the TPP enzyme family
JCP62_RS00155	COG2723	6-phospho-beta-galactosidase activity
JCP62_RS00165	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCP62_RS00165	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCP62_RS00175	COG3328	transposase activity
JCP62_RS00205	COG1674	ftsk spoiiie
JCP62_RS00210	COG2946	Replication initiation factor
JCP62_RS00255	COG0741	lytic transglycosylase activity
JCP62_RS00255	COG0791	NLP P60 protein
JCP62_RS00330	COG0582	viral genome integration into host DNA
JCP62_RS00335	COG0519	Catalyzes the synthesis of GMP from XMP
JCP62_RS00335	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JCP62_RS00340	COG1072	(Pantothenic acid kinase))
JCP62_RS00345	COG2813	Specifically methylates the guanine in position
JCP62_RS00350	COG1609	Transcriptional regulator
JCP62_RS00355	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JCP62_RS00360	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
JCP62_RS00365	COG0295	cytidine deaminase activity
JCP62_RS00370	COG1744	ABC transporter substrate-binding protein PnrA-like
JCP62_RS00375	COG3845	ABC transporter
JCP62_RS00380	COG4603	Belongs to the binding-protein-dependent transport system permease family
JCP62_RS00385	COG1079	Belongs to the binding-protein-dependent transport system permease family
JCP62_RS00390	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JCP62_RS00400	COG0813	purine-nucleoside phosphorylase activity
JCP62_RS00405	COG0588	phosphoglycerate mutase activity
JCP62_RS00415	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JCP62_RS00420	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JCP62_RS00425	COG0049	tRNA binding
JCP62_RS00430	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JCP62_RS00435	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JCP62_RS00440	COG0051	transcription antitermination factor activity, RNA binding
JCP62_RS00445	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JCP62_RS00450	COG0088	Forms part of the polypeptide exit tunnel
JCP62_RS00455	COG0089	rRNA binding
JCP62_RS00460	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JCP62_RS00470	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JCP62_RS00475	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JCP62_RS00480	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JCP62_RS00485	COG0255	Belongs to the universal ribosomal protein uL29 family
JCP62_RS00490	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JCP62_RS00495	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JCP62_RS00500	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JCP62_RS00505	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JCP62_RS00510	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JCP62_RS00515	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JCP62_RS00520	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JCP62_RS00525	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JCP62_RS00530	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JCP62_RS00535	COG1841	ribosomal large subunit assembly
JCP62_RS00540	COG0200	Binds to the 23S rRNA
JCP62_RS00545	COG0201	protein transport
JCP62_RS00550	COG0563	adenylate kinase activity
JCP62_RS00555	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JCP62_RS00560	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JCP62_RS00565	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JCP62_RS00570	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JCP62_RS00575	COG0202	RNA polymerase activity
JCP62_RS00580	COG0203	ribosomal protein L17
JCP62_RS00585	COG1122	ATPase activity
JCP62_RS00590	COG1122	ATPase activity
JCP62_RS00600	COG0101	tRNA pseudouridine synthase activity
JCP62_RS00610	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JCP62_RS00620	COG1461	Dihydroxyacetone kinase
JCP62_RS00625	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JCP62_RS00630	COG0416	fatty acid biosynthetic process
JCP62_RS00635	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JCP62_RS00645	COG4608	Belongs to the ABC transporter superfamily
JCP62_RS00650	COG0601	transmembrane transport
JCP62_RS00665	COG0571	ribonuclease III activity
JCP62_RS00670	COG1196	nuclear chromosome segregation
JCP62_RS00675	COG0561	phosphatase activity
JCP62_RS00680	COG0552	protein localization to endoplasmic reticulum
JCP62_RS00685	COG2918	glutathione biosynthetic process
JCP62_RS00685	COG1181	Belongs to the D-alanine--D-alanine ligase family
JCP62_RS00695	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JCP62_RS00700	COG4605	iron ion homeostasis
JCP62_RS00705	COG4604	ABC transporter, ATP-binding protein
JCP62_RS00710	COG4607	ABC-type enterochelin transport system periplasmic component
JCP62_RS00735	COG4932	domain protein
JCP62_RS00735	COG4886	Leucine-rich repeat (LRR) protein
JCP62_RS00750	COG3328	transposase activity
JCP62_RS00770	COG1380	Effector of murein hydrolase LrgA
JCP62_RS00790	COG1028	Short-chain dehydrogenase reductase Sdr
JCP62_RS00800	COG1268	BioY protein
JCP62_RS00805	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JCP62_RS00820	COG0561	phosphatase activity
JCP62_RS00825	COG1692	metallophosphoesterase
JCP62_RS00835	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JCP62_RS00845	COG0424	maF-like protein
JCP62_RS00850	COG1263	PTS System
JCP62_RS00850	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS00855	COG2188	Transcriptional regulator
JCP62_RS00865	COG0632	four-way junction helicase activity
JCP62_RS00870	COG2255	four-way junction helicase activity
JCP62_RS00880	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JCP62_RS00890	COG3328	transposase activity
JCP62_RS00895	COG1114	Component of the transport system for branched-chain amino acids
JCP62_RS00905	COG1113	amino acid transport
JCP62_RS00910	COG1126	abc transporter atp-binding protein
JCP62_RS00915	COG0765	amino acid transport
JCP62_RS00925	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JCP62_RS00930	COG0110	maltose O-acetyltransferase activity
JCP62_RS00935	COG1827	regulation of RNA biosynthetic process
JCP62_RS00940	COG0242	peptide deformylase activity
JCP62_RS00945	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JCP62_RS00950	COG1185	polyribonucleotide nucleotidyltransferase activity
JCP62_RS00960	COG3158	transport of potassium into the cell
JCP62_RS00965	COG1253	flavin adenine dinucleotide binding
JCP62_RS00970	COG0534	Mate efflux family protein
JCP62_RS00980	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JCP62_RS00985	COG1187	pseudouridine synthase activity
JCP62_RS00990	COG1011	Hydrolase
JCP62_RS00995	COG0572	uridine kinase
JCP62_RS01020	COG1671	Belongs to the UPF0178 family
JCP62_RS01030	COG1181	Belongs to the D-alanine--D-alanine ligase family
JCP62_RS01035	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JCP62_RS01045	COG0736	holo-[acyl-carrier-protein] synthase activity
JCP62_RS01050	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JCP62_RS01055	COG2337	Toxic component of a toxin-antitoxin (TA) module
JCP62_RS01060	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JCP62_RS01065	COG0604	alcohol dehydrogenase
JCP62_RS01065	COG3321	synthase
JCP62_RS01075	COG0531	amino acid
JCP62_RS01100	COG1174	glycine betaine transport
JCP62_RS01135	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JCP62_RS01150	COG0343	queuine tRNA-ribosyltransferase activity
JCP62_RS01155	COG1862	Preprotein translocase
JCP62_RS01160	COG1012	belongs to the aldehyde dehydrogenase family
JCP62_RS01160	COG1454	alcohol dehydrogenase
JCP62_RS01195	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
JCP62_RS01200	COG1028	Short-chain dehydrogenase reductase Sdr
JCP62_RS01205	COG1304	FMN binding
JCP62_RS01220	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JCP62_RS01225	COG1428	Deoxynucleoside kinase
JCP62_RS01240	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JCP62_RS01245	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JCP62_RS01250	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JCP62_RS01280	COG0824	Thioesterase
JCP62_RS01285	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JCP62_RS01320	COG1363	Peptidase, m42
JCP62_RS01325	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JCP62_RS01330	COG0589	response to stress
JCP62_RS01335	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JCP62_RS01340	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JCP62_RS01345	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JCP62_RS01360	COG1674	ftsk spoiiie
JCP62_RS01370	COG2946	Replication initiation factor
JCP62_RS01405	COG0741	lytic transglycosylase activity
JCP62_RS01405	COG0791	NLP P60 protein
JCP62_RS01450	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
JCP62_RS01455	COG2190	(PTS) system
JCP62_RS01455	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS01455	COG1263	PTS System
JCP62_RS01460	COG1263	PTS System
JCP62_RS01460	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS01460	COG2190	(PTS) system
JCP62_RS01470	COG3328	transposase activity
JCP62_RS01500	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JCP62_RS01510	COG0101	tRNA pseudouridine synthase activity
JCP62_RS01525	COG2186	Transcriptional regulator
JCP62_RS01555	COG1447	Phosphotransferase system cellobiose-specific component IIA
JCP62_RS01575	COG1063	alcohol dehydrogenase
JCP62_RS01585	COG4716	Myosin-crossreactive antigen
JCP62_RS01635	COG1113	amino acid transport
JCP62_RS01640	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCP62_RS01645	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCP62_RS01685	COG1051	belongs to the nudix hydrolase family
JCP62_RS01690	COG1846	Transcriptional regulator
JCP62_RS01715	COG2252	PERMEase
JCP62_RS01720	COG0366	Alpha amylase catalytic
JCP62_RS01725	COG2723	6-phospho-beta-galactosidase activity
JCP62_RS01735	COG1263	PTS System
JCP62_RS01735	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS01735	COG2190	(PTS) system
JCP62_RS01740	COG2723	6-phospho-beta-galactosidase activity
JCP62_RS01750	COG1902	pentaerythritol trinitrate reductase activity
JCP62_RS01760	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCP62_RS01770	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JCP62_RS01775	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JCP62_RS01780	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JCP62_RS01785	COG1193	negative regulation of DNA recombination
JCP62_RS01790	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JCP62_RS01800	COG1937	Protein conserved in bacteria
JCP62_RS01805	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JCP62_RS01810	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCP62_RS01815	COG3973	AAA domain
JCP62_RS01855	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
JCP62_RS01860	COG2376	Dihydroxyacetone kinase
JCP62_RS01865	COG1461	Dihydroxyacetone kinase
JCP62_RS01880	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JCP62_RS01890	COG1131	(ABC) transporter
JCP62_RS01895	COG1309	transcriptional regulator
JCP62_RS01915	COG0531	amino acid
JCP62_RS01920	COG1757	Na H antiporter
JCP62_RS01930	COG1609	Transcriptional regulator
JCP62_RS01940	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCP62_RS01950	COG2190	(PTS) system
JCP62_RS01950	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS01950	COG1263	PTS System
JCP62_RS01975	COG3479	Phenolic acid decarboxylase
JCP62_RS01980	COG1695	Transcriptional regulator
JCP62_RS01990	COG2814	Major facilitator Superfamily
JCP62_RS02010	COG0163	prenyltransferase activity
JCP62_RS02015	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JCP62_RS02025	COG1136	(ABC) transporter
JCP62_RS02025	COG0577	efflux transmembrane transporter activity
JCP62_RS02045	COG1811	Na channel or pump
JCP62_RS02080	COG1136	(ABC) transporter
JCP62_RS02100	COG3942	CHAP domain
JCP62_RS02100	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCP62_RS02105	COG1263	PTS System
JCP62_RS02105	COG2190	(PTS) system
JCP62_RS02105	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS02110	COG1869	D-ribose catabolic process
JCP62_RS02120	COG1609	Transcriptional regulator
JCP62_RS02140	COG0366	Alpha amylase catalytic
JCP62_RS02145	COG0628	permease
JCP62_RS02150	COG3443	Belongs to the bacterial solute-binding protein 9 family
JCP62_RS02150	COG0803	Belongs to the bacterial solute-binding protein 9 family
JCP62_RS02175	COG1428	Deoxynucleoside kinase
JCP62_RS02185	COG0210	DNA helicase
JCP62_RS02190	COG3328	transposase activity
JCP62_RS02200	COG1393	Belongs to the ArsC family
JCP62_RS02205	COG1393	Belongs to the ArsC family
JCP62_RS02225	COG0386	Belongs to the glutathione peroxidase family
JCP62_RS02230	COG1854	S-ribosylhomocysteine lyase activity
JCP62_RS02235	COG0626	cystathionine gamma-synthase activity
JCP62_RS02245	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JCP62_RS02250	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JCP62_RS02260	COG0019	diaminopimelate decarboxylase activity
JCP62_RS02265	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JCP62_RS02275	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JCP62_RS02280	COG2171	N-acyltransferase activity
JCP62_RS02285	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JCP62_RS02290	COG0527	aspartate kinase activity
JCP62_RS02295	COG1473	amidohydrolase
JCP62_RS02300	COG0436	Aminotransferase
JCP62_RS02305	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCP62_RS02325	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JCP62_RS02330	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JCP62_RS02345	COG2207	Transcriptional regulator
JCP62_RS02350	COG2249	NAD(P)H dehydrogenase (quinone) activity
JCP62_RS02365	COG1113	amino acid transport
JCP62_RS02370	COG1121	(ABC) transporter
JCP62_RS02375	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JCP62_RS02390	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JCP62_RS02395	COG2823	Periplasmic or secreted lipoprotein
JCP62_RS02395	COG1652	LysM domain
JCP62_RS02405	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JCP62_RS02410	COG0477	Major facilitator Superfamily
JCP62_RS02425	COG1438	arginine binding
JCP62_RS02440	COG1764	response to oxidative stress
JCP62_RS02445	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JCP62_RS02450	COG1335	isochorismatase
JCP62_RS02460	COG2135	peptidase activity
JCP62_RS02505	COG0745	RESPONSE REGULATOR receiver
JCP62_RS02510	COG2205	protein histidine kinase activity
JCP62_RS02515	COG4975	Glucose uptake
JCP62_RS02520	COG0531	amino acid
JCP62_RS02525	COG3853	Toxic anion resistance protein (TelA)
JCP62_RS02545	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JCP62_RS02550	COG1335	isochorismatase
JCP62_RS02560	COG3590	peptidase
JCP62_RS02570	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JCP62_RS02575	COG1104	cysteine desulfurase activity
JCP62_RS02595	COG0482	sulfurtransferase activity
JCP62_RS02605	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JCP62_RS02610	COG2814	Major facilitator Superfamily
JCP62_RS02630	COG0463	Glycosyl transferase, family 2
JCP62_RS02635	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JCP62_RS02640	COG2855	membrane
JCP62_RS02650	COG0583	DNA-binding transcription factor activity
JCP62_RS02655	COG0772	Belongs to the SEDS family
JCP62_RS02660	COG1393	Belongs to the ArsC family
JCP62_RS02665	COG0509	glycine decarboxylation via glycine cleavage system
JCP62_RS02670	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JCP62_RS02675	COG2011	ABC-type metal ion transport system permease component
JCP62_RS02680	COG1464	Belongs to the NlpA lipoprotein family
JCP62_RS02690	COG0719	Fe-S assembly protein
JCP62_RS02695	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JCP62_RS02705	COG0719	Fe-S assembly protein
JCP62_RS02825	COG1263	PTS System
JCP62_RS02825	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS02825	COG2190	(PTS) system
JCP62_RS02830	COG2723	6-phospho-beta-galactosidase activity
JCP62_RS02835	COG3711	transcriptional antiterminator
JCP62_RS02920	COG1136	(ABC) transporter
JCP62_RS02920	COG0577	efflux transmembrane transporter activity
JCP62_RS02925	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JCP62_RS02940	COG1597	lipid kinase activity
JCP62_RS02950	COG4372	Transposase
JCP62_RS03005	COG3764	Sortase (surface protein transpeptidase)
JCP62_RS03025	COG2723	6-phospho-beta-galactosidase activity
JCP62_RS03030	COG2188	Transcriptional regulator
JCP62_RS03040	COG1611	Belongs to the LOG family
JCP62_RS03050	COG1428	Deoxynucleoside kinase
JCP62_RS03065	COG2723	6-phospho-beta-galactosidase activity
JCP62_RS03075	COG1368	sulfuric ester hydrolase activity
JCP62_RS03085	COG0105	UTP biosynthetic process
JCP62_RS03090	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCP62_RS03095	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCP62_RS03100	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JCP62_RS03105	COG2011	ABC-type metal ion transport system permease component
JCP62_RS03110	COG1464	Belongs to the NlpA lipoprotein family
JCP62_RS03120	COG1757	Na H antiporter
JCP62_RS03130	COG1113	amino acid transport
JCP62_RS03140	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JCP62_RS03145	COG1929	Belongs to the glycerate kinase type-1 family
JCP62_RS03150	COG0488	(ABC) transporter
JCP62_RS03165	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
JCP62_RS03170	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS03170	COG1263	PTS System
JCP62_RS03185	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JCP62_RS03190	COG1131	(ABC) transporter
JCP62_RS03210	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
JCP62_RS03225	COG0346	lactoylglutathione lyase activity
JCP62_RS03250	COG0561	phosphatase activity
JCP62_RS03255	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JCP62_RS03260	COG0280	phosphate acetyltransferase
JCP62_RS03265	COG0802	atpase or kinase
JCP62_RS03270	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JCP62_RS03280	COG0708	Exodeoxyribonuclease III
JCP62_RS03290	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JCP62_RS03315	COG1053	succinate dehydrogenase
JCP62_RS03320	COG3321	synthase
JCP62_RS03320	COG1028	Short-chain dehydrogenase reductase Sdr
JCP62_RS03320	COG0604	alcohol dehydrogenase
JCP62_RS03325	COG0702	epimerase
JCP62_RS03330	COG4684	Psort location CytoplasmicMembrane, score
JCP62_RS03335	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JCP62_RS03340	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JCP62_RS03345	COG0604	alcohol dehydrogenase
JCP62_RS03355	COG3842	ATPase activity
JCP62_RS03360	COG1176	ABC-type spermidine putrescine transport system, permease component I
JCP62_RS03365	COG1177	transmembrane transport
JCP62_RS03370	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JCP62_RS03375	COG3829	transcription factor binding
JCP62_RS03390	COG3715	PTS system
JCP62_RS03395	COG3716	PTS system mannose fructose sorbose family IID component
JCP62_RS03410	COG1940	carbohydrate kinase activity
JCP62_RS03440	COG0582	viral genome integration into host DNA
JCP62_RS03445	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JCP62_RS03455	COG0789	Transcriptional regulator
JCP62_RS03465	COG0504	CTP synthase activity
JCP62_RS03475	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JCP62_RS03480	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JCP62_RS03485	COG0254	rRNA binding
JCP62_RS03505	COG1349	DNA-binding transcription factor activity
JCP62_RS03515	COG2814	Major facilitator Superfamily
JCP62_RS03525	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JCP62_RS03545	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JCP62_RS03550	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JCP62_RS03555	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JCP62_RS03560	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JCP62_RS03565	COG3870	Protein conserved in bacteria
JCP62_RS03570	COG0470	DNA polymerase III
JCP62_RS03575	COG1774	PSP1 C-terminal conserved region
JCP62_RS03580	COG4467	Involved in initiation control of chromosome replication
JCP62_RS03595	COG0602	queuosine metabolic process
JCP62_RS03600	COG1328	CTP reductase activity
JCP62_RS03605	COG1136	(ABC) transporter
JCP62_RS03610	COG0577	efflux transmembrane transporter activity
JCP62_RS03625	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JCP62_RS03630	COG1696	Membrane protein involved in D-alanine export
JCP62_RS03635	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JCP62_RS03640	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JCP62_RS03645	COG1363	Peptidase, m42
JCP62_RS03655	COG1234	tRNA 3'-trailer cleavage
JCP62_RS03660	COG0095	Lipoate-protein ligase
JCP62_RS03685	COG3759	membrane
JCP62_RS03690	COG0659	secondary active sulfate transmembrane transporter activity
JCP62_RS03700	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JCP62_RS03710	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JCP62_RS03715	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCP62_RS03715	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCP62_RS03720	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS03720	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS03730	COG3715	PTS system
JCP62_RS03735	COG3716	PTS system mannose fructose sorbose family IID component
JCP62_RS03745	COG2261	transglycosylase associated protein
JCP62_RS03750	COG0006	proline dipeptidase activity
JCP62_RS03755	COG1302	Protein conserved in bacteria
JCP62_RS03760	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JCP62_RS03765	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JCP62_RS03770	COG1570	exodeoxyribonuclease VII activity
JCP62_RS03775	COG1722	exodeoxyribonuclease VII activity
JCP62_RS03785	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JCP62_RS03790	COG1438	arginine binding
JCP62_RS03795	COG0497	DNA recombination
JCP62_RS03830	COG0768	penicillin binding
JCP62_RS03865	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JCP62_RS03870	COG1799	cell septum assembly
JCP62_RS03880	COG2302	S4 RNA-binding domain
JCP62_RS03885	COG3599	regulation of cell shape
JCP62_RS03890	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JCP62_RS03895	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JCP62_RS03915	COG0673	inositol 2-dehydrogenase activity
JCP62_RS03920	COG0513	Belongs to the DEAD box helicase family
JCP62_RS03925	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCP62_RS03925	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCP62_RS03930	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCP62_RS03935	COG1447	Phosphotransferase system cellobiose-specific component IIA
JCP62_RS03940	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCP62_RS04005	COG1396	sequence-specific DNA binding
JCP62_RS04160	COG0740	serine-type endopeptidase activity
JCP62_RS04295	COG2309	aminopeptidase activity
JCP62_RS04305	COG0716	FMN binding
JCP62_RS04310	COG0024	Methionine aminopeptidase
JCP62_RS04315	COG1295	ribonuclease BN
JCP62_RS04320	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JCP62_RS04335	COG1215	transferase activity, transferring glycosyl groups
JCP62_RS04340	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JCP62_RS04350	COG1088	dTDP-glucose 4,6-dehydratase activity
JCP62_RS04355	COG1091	dTDP-4-dehydrorhamnose reductase activity
JCP62_RS04370	COG1682	transport, permease protein
JCP62_RS04380	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JCP62_RS04385	COG1216	Glycosyl transferase, family 2
JCP62_RS04385	COG0438	transferase activity, transferring glycosyl groups
JCP62_RS04395	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JCP62_RS04400	COG1216	Glycosyl transferase, family 2
JCP62_RS04405	COG1215	transferase activity, transferring glycosyl groups
JCP62_RS04410	COG1216	Glycosyl transferase, family 2
JCP62_RS04410	COG1442	glycosyl transferase family 8
JCP62_RS04415	COG0463	Glycosyl transferase, family 2
JCP62_RS04415	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JCP62_RS04450	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JCP62_RS04475	COG4372	Transposase
JCP62_RS04480	COG3328	transposase activity
JCP62_RS04500	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JCP62_RS04505	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JCP62_RS04515	COG4585	Histidine kinase
JCP62_RS04525	COG0569	domain protein
JCP62_RS04550	COG2246	polysaccharide biosynthetic process
JCP62_RS04555	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JCP62_RS04565	COG1316	TRANSCRIPTIONal
JCP62_RS04570	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
JCP62_RS04575	COG3397	chitin binding
JCP62_RS04580	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JCP62_RS04585	COG2137	regulation of response to DNA damage stimulus
JCP62_RS04590	COG1194	a g-specific adenine glycosylase
JCP62_RS04595	COG3557	Belongs to the UPF0374 family
JCP62_RS04610	COG0628	permease
JCP62_RS04615	COG1253	flavin adenine dinucleotide binding
JCP62_RS04620	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JCP62_RS04635	COG0542	response to heat
JCP62_RS04640	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS04645	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JCP62_RS04655	COG0438	transferase activity, transferring glycosyl groups
JCP62_RS04660	COG2084	Dehydrogenase
JCP62_RS04665	COG4703	Protein of unknown function (DUF1797)
JCP62_RS04670	COG0322	excinuclease ABC activity
JCP62_RS04675	COG1846	Transcriptional regulator
JCP62_RS04680	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JCP62_RS04690	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JCP62_RS04700	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JCP62_RS04710	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JCP62_RS04715	COG0439	Biotin carboxylase
JCP62_RS04720	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JCP62_RS04725	COG0825	malonyl-CoA metabolic process
JCP62_RS04730	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JCP62_RS04735	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JCP62_RS04740	COG1534	Rna-binding protein
JCP62_RS04745	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JCP62_RS04750	COG1713	HD superfamily hydrolase involved in NAD metabolism
JCP62_RS04755	COG0799	negative regulation of ribosome biogenesis
JCP62_RS04760	COG2226	methyltransferase
JCP62_RS04765	COG1323	Belongs to the UPF0348 family
JCP62_RS04770	COG0217	transcriptional regulatory protein
JCP62_RS04780	COG3973	AAA domain
JCP62_RS04785	COG2217	Heavy metal translocating P-type atpase
JCP62_RS04790	COG1942	4-Oxalocrotonate Tautomerase
JCP62_RS04795	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JCP62_RS04800	COG1737	Transcriptional regulator
JCP62_RS04805	COG0768	penicillin binding
JCP62_RS04810	COG0561	phosphatase activity
JCP62_RS04815	COG2252	PERMEase
JCP62_RS04820	COG2814	Major facilitator Superfamily
JCP62_RS04830	COG0587	DNA-directed DNA polymerase activity
JCP62_RS04835	COG0205	6-phosphofructokinase activity
JCP62_RS04845	COG0583	DNA-binding transcription factor activity
JCP62_RS04855	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JCP62_RS04860	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JCP62_RS04865	COG0745	RESPONSE REGULATOR receiver
JCP62_RS04870	COG5002	protein histidine kinase activity
JCP62_RS04955	COG3711	transcriptional antiterminator
JCP62_RS04965	COG1263	PTS System
JCP62_RS04965	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS04965	COG2190	(PTS) system
JCP62_RS04975	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS04975	COG1263	PTS System
JCP62_RS04975	COG2190	(PTS) system
JCP62_RS04980	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCP62_RS05000	COG1349	DNA-binding transcription factor activity
JCP62_RS05025	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
JCP62_RS05030	COG3623	hexulose-6-phosphate isomerase
JCP62_RS05040	COG0456	acetyltransferase
JCP62_RS05060	COG3711	transcriptional antiterminator
JCP62_RS05095	COG3964	amidohydrolase
JCP62_RS05110	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS05110	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JCP62_RS05110	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JCP62_RS05115	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS05115	COG3711	transcriptional antiterminator
JCP62_RS05120	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JCP62_RS05125	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JCP62_RS05130	COG0789	Transcriptional regulator
JCP62_RS05140	COG1105	Belongs to the carbohydrate kinase PfkB family
JCP62_RS05145	COG1349	DNA-binding transcription factor activity
JCP62_RS05150	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS05160	COG3775	system Galactitol-specific IIC component
JCP62_RS05175	COG0400	carboxylic ester hydrolase activity
JCP62_RS05180	COG0346	lactoylglutathione lyase activity
JCP62_RS05190	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCP62_RS05195	COG2723	6-phospho-beta-galactosidase activity
JCP62_RS05200	COG0589	response to stress
JCP62_RS05215	COG1393	Belongs to the ArsC family
JCP62_RS05225	COG0351	phosphomethylpyrimidine kinase
JCP62_RS05230	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JCP62_RS05235	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCP62_RS05245	COG3425	synthase
JCP62_RS05250	COG0183	Belongs to the thiolase family
JCP62_RS05265	COG0656	L-ascorbic acid biosynthetic process
JCP62_RS05285	COG0392	lysyltransferase activity
JCP62_RS05285	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JCP62_RS05290	COG0596	Alpha beta hydrolase
JCP62_RS05295	COG0741	lytic transglycosylase activity
JCP62_RS05305	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCP62_RS05310	COG0358	DNA primase activity
JCP62_RS05315	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JCP62_RS05325	COG2996	Protein conserved in bacteria
JCP62_RS05330	COG0735	belongs to the Fur family
JCP62_RS05335	COG4974	Belongs to the 'phage' integrase family
JCP62_RS05345	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
JCP62_RS05350	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JCP62_RS05355	COG1187	pseudouridine synthase activity
JCP62_RS05360	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JCP62_RS05365	COG1288	antiporter activity
JCP62_RS05370	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JCP62_RS05395	COG0514	ATP-dependent DNA helicase (RecQ)
JCP62_RS05405	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JCP62_RS05410	COG0539	negative regulation of cytoplasmic translation
JCP62_RS05415	COG1160	GTP binding
JCP62_RS05420	COG0776	regulation of translation
JCP62_RS05430	COG0457	Tetratricopeptide repeat
JCP62_RS05435	COG5582	Belongs to the UPF0302 family
JCP62_RS05440	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCP62_RS05445	COG1694	Mazg nucleotide pyrophosphohydrolase
JCP62_RS05450	COG0617	tRNA 3'-terminal CCA addition
JCP62_RS05465	COG0025	NhaP-type Na H and K H
JCP62_RS05470	COG0488	(ABC) transporter
JCP62_RS05475	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JCP62_RS05485	COG1272	protein, Hemolysin III
JCP62_RS05490	COG1307	EDD domain protein, DegV family
JCP62_RS05495	COG2755	lipolytic protein G-D-S-L family
JCP62_RS05500	COG4698	Protein conserved in bacteria
JCP62_RS05510	COG4479	Belongs to the UPF0346 family
JCP62_RS05515	COG0681	Belongs to the peptidase S26 family
JCP62_RS05530	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JCP62_RS05535	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JCP62_RS05540	COG0758	DNA mediated transformation
JCP62_RS05545	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JCP62_RS05550	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
JCP62_RS05555	COG4974	Belongs to the 'phage' integrase family
JCP62_RS05560	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JCP62_RS05565	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JCP62_RS05580	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JCP62_RS05585	COG1832	CoA-binding protein
JCP62_RS05590	COG0187	DNA topoisomerase II activity
JCP62_RS05600	COG1882	Formate acetyltransferase
JCP62_RS05605	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JCP62_RS05610	COG1227	inorganic diphosphatase activity
JCP62_RS05630	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
JCP62_RS05640	COG1073	alpha beta
JCP62_RS05645	COG1609	Transcriptional regulator
JCP62_RS05655	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCP62_RS05665	COG1732	Glycine betaine
JCP62_RS05680	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JCP62_RS05690	COG1116	anion transmembrane transporter activity
JCP62_RS05695	COG0084	hydrolase, TatD family'
JCP62_RS05700	COG3942	CHAP domain
JCP62_RS05700	COG1388	LysM domain
JCP62_RS05745	COG0436	Aminotransferase
JCP62_RS05765	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JCP62_RS05770	COG4565	transcriptional regulatory protein
JCP62_RS05775	COG3290	protein histidine kinase activity
JCP62_RS05780	COG3290	protein histidine kinase activity
JCP62_RS05790	COG2268	Band 7 protein
JCP62_RS05805	COG0673	inositol 2-dehydrogenase activity
JCP62_RS05815	COG1876	peptidase activity
JCP62_RS05820	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCP62_RS05820	COG1388	LysM domain
JCP62_RS05830	COG1653	transport
JCP62_RS05835	COG1175	transmembrane transport
JCP62_RS05840	COG0395	ABC-type sugar transport system, permease component
JCP62_RS05850	COG0673	inositol 2-dehydrogenase activity
JCP62_RS05855	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JCP62_RS05860	COG2233	PERMEase
JCP62_RS05865	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JCP62_RS05870	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JCP62_RS05875	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JCP62_RS05890	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JCP62_RS05895	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JCP62_RS05900	COG0047	phosphoribosylformylglycinamidine synthase activity
JCP62_RS05905	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JCP62_RS05915	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JCP62_RS05920	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JCP62_RS05925	COG0138	bifunctional purine biosynthesis protein purh
JCP62_RS05930	COG0151	Belongs to the GarS family
JCP62_RS05935	COG4989	oxidoreductase activity
JCP62_RS05945	COG2972	Histidine kinase
JCP62_RS05955	COG4213	ABC transporter substrate-binding protein
JCP62_RS05965	COG4214	carbohydrate transport
JCP62_RS05970	COG0516	GMP reductase activity
JCP62_RS05975	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JCP62_RS05985	COG0022	dehydrogenase e1 component
JCP62_RS06000	COG4476	Belongs to the UPF0223 family
JCP62_RS06005	COG0483	inositol monophosphate 1-phosphatase activity
JCP62_RS06010	COG1217	gtp-binding protein TYPA
JCP62_RS06015	COG0514	ATP-dependent DNA helicase (RecQ)
JCP62_RS06020	COG4838	Belongs to the UPF0358 family
JCP62_RS06025	COG0772	Belongs to the SEDS family
JCP62_RS06030	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JCP62_RS06045	COG4471	UPF0298 protein
JCP62_RS06050	COG0742	ribosomal rna small subunit methyltransferase
JCP62_RS06055	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JCP62_RS06060	COG3480	Lon protease (S16) C-terminal proteolytic domain
JCP62_RS06065	COG1555	photosystem II stabilization
JCP62_RS06065	COG1596	polysaccharide export
JCP62_RS06080	COG2131	deaminase
JCP62_RS06085	COG2333	competence protein COMEC
JCP62_RS06085	COG0658	competence protein
JCP62_RS06090	COG1466	dna polymerase III delta subunit
JCP62_RS06095	COG0268	Binds directly to 16S ribosomal RNA
JCP62_RS06105	COG2707	UPF0756 membrane protein
JCP62_RS06110	COG2217	Heavy metal translocating P-type atpase
JCP62_RS06115	COG1968	undecaprenyl-diphosphatase activity
JCP62_RS06135	COG1666	GTP binding
JCP62_RS06140	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCP62_RS06145	COG2151	metal-sulfur cluster biosynthetic enzyme
JCP62_RS06170	COG1388	LysM domain
JCP62_RS06170	COG3942	CHAP domain
JCP62_RS06225	COG4990	cell redox homeostasis
JCP62_RS06245	COG3104	oligopeptide transport
JCP62_RS06255	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
JCP62_RS06260	COG1074	ATP-dependent DNA helicase activity
JCP62_RS06265	COG1733	regulation of RNA biosynthetic process
JCP62_RS06270	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JCP62_RS06275	COG0072	phenylalanine-tRNA ligase activity
JCP62_RS06275	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JCP62_RS06285	COG1126	abc transporter atp-binding protein
JCP62_RS06290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JCP62_RS06295	COG0765	amino acid transport
JCP62_RS06300	COG0765	amino acid transport
JCP62_RS06305	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JCP62_RS06310	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JCP62_RS06320	COG0517	IMP dehydrogenase activity
JCP62_RS06325	COG0668	transmembrane transport
JCP62_RS06330	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JCP62_RS06335	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JCP62_RS06340	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JCP62_RS06370	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JCP62_RS06380	COG1234	tRNA 3'-trailer cleavage
JCP62_RS06385	COG0300	oxidoreductase activity
JCP62_RS06390	COG5416	Lipopolysaccharide assembly protein A domain
JCP62_RS06395	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JCP62_RS06395	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JCP62_RS06400	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JCP62_RS06415	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JCP62_RS06435	COG1388	LysM domain
JCP62_RS06435	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCP62_RS06440	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JCP62_RS06445	COG0735	belongs to the Fur family
JCP62_RS06450	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCP62_RS06465	COG1846	Transcriptional regulator
JCP62_RS06475	COG3935	DnaD domain protein
JCP62_RS06480	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JCP62_RS06490	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JCP62_RS06495	COG3331	DNA recombination
JCP62_RS06500	COG4474	Belongs to the UPF0398 family
JCP62_RS06505	COG3599	regulation of cell shape
JCP62_RS06515	COG0116	Belongs to the methyltransferase superfamily
JCP62_RS06520	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JCP62_RS06525	COG1418	mRNA catabolic process
JCP62_RS06530	COG0156	8-amino-7-oxononanoate synthase activity
JCP62_RS06535	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JCP62_RS06540	COG0531	amino acid
JCP62_RS06555	COG0513	Belongs to the DEAD box helicase family
JCP62_RS06560	COG2153	protein acetylation
JCP62_RS06565	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JCP62_RS06570	COG4684	Psort location CytoplasmicMembrane, score
JCP62_RS06580	COG0328	RNA-DNA hybrid ribonuclease activity
JCP62_RS06590	COG1278	Cold shock
JCP62_RS06595	COG2759	Belongs to the formate--tetrahydrofolate ligase family
JCP62_RS06610	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JCP62_RS06615	COG0564	pseudouridine synthase activity
JCP62_RS06625	COG2233	PERMEase
JCP62_RS06630	COG0540	Belongs to the ATCase OTCase family
JCP62_RS06635	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JCP62_RS06640	COG0505	Belongs to the CarA family
JCP62_RS06645	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JCP62_RS06650	COG0543	2 iron, 2 sulfur cluster binding
JCP62_RS06660	COG0284	orotidine-5'-phosphate decarboxylase activity
JCP62_RS06690	COG1293	RNA-binding protein homologous to eukaryotic snRNP
JCP62_RS06710	COG4120	Belongs to the binding-protein-dependent transport system permease family
JCP62_RS06720	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JCP62_RS06755	COG0039	L-malate dehydrogenase activity
JCP62_RS06775	COG3037	sugar-specific permease SgaT UlaA
JCP62_RS06785	COG3711	transcriptional antiterminator
JCP62_RS06795	COG0673	inositol 2-dehydrogenase activity
JCP62_RS06855	COG0745	RESPONSE REGULATOR receiver
JCP62_RS06860	COG5002	protein histidine kinase activity
JCP62_RS06865	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
JCP62_RS06875	COG0318	PFAM AMP-dependent synthetase and ligase
JCP62_RS06880	COG0351	phosphomethylpyrimidine kinase
JCP62_RS06890	COG4475	Protein of unknown function (DUF436)
JCP62_RS06895	COG0366	Alpha amylase catalytic
JCP62_RS06915	COG1307	EDD domain protein, DegV family
JCP62_RS06920	COG2244	polysaccharide biosynthetic process
JCP62_RS06970	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JCP62_RS06975	COG0194	GDP metabolic process
JCP62_RS06995	COG0765	amino acid transport
JCP62_RS07000	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JCP62_RS07010	COG0167	dihydroorotate dehydrogenase activity
JCP62_RS07020	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JCP62_RS07025	COG5521	maltodextrose utilization protein MalA
JCP62_RS07030	COG3833	ABC-type maltose transport systems, permease component
JCP62_RS07035	COG1175	transmembrane transport
JCP62_RS07040	COG2182	Extracellular solute-binding protein
JCP62_RS07050	COG0366	Alpha amylase catalytic
JCP62_RS07055	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCP62_RS07065	COG1764	response to oxidative stress
JCP62_RS07070	COG1846	Transcriptional regulator
JCP62_RS07075	COG0628	permease
JCP62_RS07090	COG1312	Catalyzes the dehydration of D-mannonate
JCP62_RS07095	COG0246	Mannitol dehydrogenase
JCP62_RS07105	COG0450	alkyl hydroperoxide reductase
JCP62_RS07150	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JCP62_RS07165	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JCP62_RS07195	COG2946	Replication initiation factor
JCP62_RS07210	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JCP62_RS07230	COG0004	ammonium transporteR
JCP62_RS07240	COG2261	transglycosylase associated protein
JCP62_RS07270	COG3655	Transcriptional regulator
JCP62_RS07285	COG2261	transglycosylase associated protein
JCP62_RS07305	COG1028	Short-chain dehydrogenase reductase Sdr
JCP62_RS07320	COG1442	glycosyl transferase family 8
JCP62_RS07325	COG1442	glycosyl transferase family 8
JCP62_RS07335	COG0561	phosphatase activity
JCP62_RS07360	COG1476	TRANSCRIPTIONal
JCP62_RS07375	COG1278	Cold shock
JCP62_RS07390	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCP62_RS07395	COG1312	Catalyzes the dehydration of D-mannonate
JCP62_RS07415	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS07420	COG3716	PTS system mannose fructose sorbose family IID component
JCP62_RS07430	COG0371	Dehydrogenase
JCP62_RS07445	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JCP62_RS07450	COG1737	Transcriptional regulator
JCP62_RS07450	COG0837	glucose binding
JCP62_RS07460	COG2272	Belongs to the type-B carboxylesterase lipase family
JCP62_RS07465	COG1073	alpha beta
JCP62_RS07500	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JCP62_RS07520	COG3732	PTS system glucitol sorbitol-specific
JCP62_RS07525	COG3730	PTS system glucitol sorbitol-specific
JCP62_RS07535	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS07535	COG3711	transcriptional antiterminator
JCP62_RS07570	COG4974	Belongs to the 'phage' integrase family
JCP62_RS07575	COG0481	GTPase activity
JCP62_RS07595	COG0542	response to heat
JCP62_RS07610	COG1597	lipid kinase activity
JCP62_RS07615	COG2195	Cleaves the N-terminal amino acid of tripeptides
JCP62_RS07620	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JCP62_RS07625	COG2384	SAM-dependent methyltransferase
JCP62_RS07635	COG1484	DNA-dependent DNA replication
JCP62_RS07645	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JCP62_RS07655	COG0237	dephospho-CoA kinase activity
JCP62_RS07660	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JCP62_RS07665	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JCP62_RS07665	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JCP62_RS07680	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JCP62_RS07685	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JCP62_RS07690	COG3091	SprT-like family
JCP62_RS07695	COG2183	response to ionizing radiation
JCP62_RS07705	COG1054	Belongs to the UPF0176 family
JCP62_RS07725	COG0546	phosphoglycolate phosphatase activity
JCP62_RS07730	COG0588	phosphoglycerate mutase activity
JCP62_RS07775	COG2207	Transcriptional regulator
JCP62_RS07775	COG4753	response regulator
JCP62_RS07785	COG2972	Histidine kinase
JCP62_RS07790	COG0077	Prephenate dehydratase
JCP62_RS07795	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JCP62_RS07800	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JCP62_RS07805	COG0287	Prephenate dehydrogenase
JCP62_RS07810	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JCP62_RS07820	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JCP62_RS07825	COG3250	beta-galactosidase activity
JCP62_RS07840	COG1609	Transcriptional regulator
JCP62_RS07850	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JCP62_RS07860	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JCP62_RS07865	COG1597	lipid kinase activity
JCP62_RS07870	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JCP62_RS07875	COG0154	amidase activity
JCP62_RS07880	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JCP62_RS07885	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JCP62_RS07890	COG0210	DNA helicase
JCP62_RS07900	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JCP62_RS07900	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JCP62_RS07900	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS07905	COG1105	Belongs to the carbohydrate kinase PfkB family
JCP62_RS07910	COG1349	DNA-binding transcription factor activity
JCP62_RS07930	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JCP62_RS07935	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JCP62_RS07940	COG0544	peptidyl-prolyl cis-trans isomerase activity
JCP62_RS07950	COG1714	RDD family
JCP62_RS07965	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JCP62_RS07970	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JCP62_RS08035	COG1481	regulation of sporulation
JCP62_RS08040	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JCP62_RS08045	COG1660	Displays ATPase and GTPase activities
JCP62_RS08060	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JCP62_RS08065	COG0556	nucleotide-excision repair
JCP62_RS08070	COG0765	amino acid transport
JCP62_RS08075	COG1126	abc transporter atp-binding protein
JCP62_RS08080	COG0484	heat shock protein binding
JCP62_RS08085	COG0443	Heat shock 70 kDa protein
JCP62_RS08090	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JCP62_RS08095	COG1420	regulation of RNA biosynthetic process
JCP62_RS08100	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JCP62_RS08145	COG0693	protein deglycase activity
JCP62_RS08155	COG1619	proteins homologs of microcin C7 resistance protein MccF
JCP62_RS08165	COG5646	InterPro IPR014922
JCP62_RS08175	COG4975	Glucose uptake
JCP62_RS08190	COG0196	riboflavin kinase activity
JCP62_RS08195	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JCP62_RS08200	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
JCP62_RS08205	COG1175	transmembrane transport
JCP62_RS08210	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JCP62_RS08225	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JCP62_RS08230	COG0195	Participates in both transcription termination and antitermination
JCP62_RS08235	COG0779	Required for maturation of 30S ribosomal subunits
JCP62_RS08240	COG2176	DNA-directed DNA polymerase activity
JCP62_RS08245	COG0442	prolyl-tRNA aminoacylation
JCP62_RS08250	COG0750	zinc metalloprotease
JCP62_RS08255	COG4589	Belongs to the CDS family
JCP62_RS08260	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JCP62_RS08270	COG0233	cytoplasmic translational termination
JCP62_RS08275	COG0528	UMP kinase activity
JCP62_RS08280	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JCP62_RS08285	COG0052	Belongs to the universal ribosomal protein uS2 family
JCP62_RS08290	COG1438	arginine binding
JCP62_RS08300	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCP62_RS08305	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCP62_RS08310	COG0018	arginyl-trna synthetase
JCP62_RS08325	COG2235	arginine
JCP62_RS08340	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JCP62_RS08345	COG0456	acetyltransferase
JCP62_RS08355	COG1214	PFAM Peptidase M22, glycoprotease
JCP62_RS08365	COG1609	Transcriptional regulator
JCP62_RS08370	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
JCP62_RS08375	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JCP62_RS08390	COG3189	MarR family transcriptional regulator
JCP62_RS08400	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JCP62_RS08405	COG1940	carbohydrate kinase activity
JCP62_RS08420	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JCP62_RS08425	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JCP62_RS08430	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JCP62_RS08435	COG1120	ATPase activity
JCP62_RS08450	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JCP62_RS08455	COG4876	unkown
JCP62_RS08460	COG0367	asparagine synthase
JCP62_RS08465	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JCP62_RS08750	COG1396	sequence-specific DNA binding
JCP62_RS08780	COG1309	transcriptional regulator
JCP62_RS08800	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JCP62_RS08845	COG0166	Belongs to the GPI family
JCP62_RS08850	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JCP62_RS08855	COG2081	HI0933 family
JCP62_RS08860	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JCP62_RS08865	COG0710	3-dehydroquinate dehydratase activity
JCP62_RS08870	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JCP62_RS08875	COG1368	sulfuric ester hydrolase activity
JCP62_RS08895	COG3850	Histidine kinase
JCP62_RS08895	COG5002	protein histidine kinase activity
JCP62_RS08900	COG0745	RESPONSE REGULATOR receiver
JCP62_RS08955	COG1956	GAF domain-containing protein
JCP62_RS08960	COG3527	Alpha-acetolactate decarboxylase
JCP62_RS08965	COG0028	Belongs to the TPP enzyme family
JCP62_RS08975	COG0395	ABC-type sugar transport system, permease component
JCP62_RS08985	COG0583	DNA-binding transcription factor activity
JCP62_RS08990	COG0789	Transcriptional regulator
JCP62_RS08995	COG2814	Major facilitator Superfamily
JCP62_RS09050	COG4974	Belongs to the 'phage' integrase family
JCP62_RS09075	COG4372	Transposase
JCP62_RS09110	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS09110	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS09115	COG3716	PTS system mannose fructose sorbose family IID component
JCP62_RS09120	COG3715	PTS system
JCP62_RS09125	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCP62_RS09125	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCP62_RS09130	COG1940	carbohydrate kinase activity
JCP62_RS09135	COG2190	(PTS) system
JCP62_RS09150	COG1609	Transcriptional regulator
JCP62_RS09175	COG3385	transposase activity
JCP62_RS09195	COG0791	NLP P60 protein
JCP62_RS09195	COG0741	lytic transglycosylase activity
JCP62_RS09235	COG1196	nuclear chromosome segregation
JCP62_RS09260	COG2946	Replication initiation factor
JCP62_RS09275	COG1674	ftsk spoiiie
JCP62_RS09305	COG0335	large ribosomal subunit rRNA binding
JCP62_RS09310	COG0336	Belongs to the RNA methyltransferase TrmD family
JCP62_RS09315	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JCP62_RS09325	COG1837	Belongs to the UPF0109 family
JCP62_RS09330	COG0228	four-way junction DNA binding
JCP62_RS09335	COG0431	NADPH-dependent FMN reductase
JCP62_RS09340	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JCP62_RS09345	COG0519	Catalyzes the synthesis of GMP from XMP
JCP62_RS09350	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JCP62_RS09355	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
JCP62_RS09365	COG0745	RESPONSE REGULATOR receiver
JCP62_RS09370	COG5002	protein histidine kinase activity
JCP62_RS09375	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCP62_RS09380	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JCP62_RS09400	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JCP62_RS09415	COG2801	Transposase and inactivated derivatives
JCP62_RS09450	COG0714	Associated with various cellular activities
JCP62_RS09460	COG1305	Transglutaminase-like
JCP62_RS09465	COG2217	Heavy metal translocating P-type atpase
JCP62_RS09470	COG2217	Heavy metal translocating P-type atpase
JCP62_RS09475	COG2608	mercury ion transmembrane transporter activity
JCP62_RS09480	COG3682	Transcriptional regulator
JCP62_RS09490	COG0531	amino acid
JCP62_RS09495	COG2217	Heavy metal translocating P-type atpase
JCP62_RS09520	COG0017	Asparaginyl-tRNA synthetase
JCP62_RS09525	COG0436	Aminotransferase
JCP62_RS09535	COG1199	ATP-dependent helicase activity
JCP62_RS09535	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JCP62_RS09540	COG1278	Cold shock
JCP62_RS09560	COG1686	Belongs to the peptidase S11 family
JCP62_RS09570	COG0038	chloride channel
JCP62_RS09585	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JCP62_RS09590	COG1254	Belongs to the acylphosphatase family
JCP62_RS09595	COG0706	membrane insertase activity
JCP62_RS09600	COG3684	Belongs to the aldolase LacD family
JCP62_RS09620	COG4372	Transposase
JCP62_RS09670	COG1216	Glycosyl transferase, family 2
JCP62_RS09695	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JCP62_RS09700	COG4464	protein tyrosine phosphatase activity
JCP62_RS09705	COG0489	protein tyrosine kinase activity
JCP62_RS09710	COG3944	biosynthesis protein
JCP62_RS09715	COG1316	TRANSCRIPTIONal
JCP62_RS09725	COG0751	glycine-tRNA ligase activity
JCP62_RS09730	COG0752	glycyl-tRNA synthetase alpha subunit
JCP62_RS09735	COG1381	Involved in DNA repair and RecF pathway recombination
JCP62_RS09740	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JCP62_RS09745	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JCP62_RS09750	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JCP62_RS09760	COG1702	phosphate starvation-inducible protein PhoH
JCP62_RS09765	COG1114	Component of the transport system for branched-chain amino acids
JCP62_RS09770	COG1610	YqeY-like protein
JCP62_RS09775	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JCP62_RS09780	COG0735	belongs to the Fur family
JCP62_RS09785	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
JCP62_RS09790	COG0640	Transcriptional regulator
JCP62_RS09795	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JCP62_RS09800	COG0492	ferredoxin-NADP+ reductase activity
JCP62_RS09805	COG2723	6-phospho-beta-galactosidase activity
JCP62_RS09810	COG1486	melibiose metabolic process
JCP62_RS09815	COG1737	Transcriptional regulator
JCP62_RS09820	COG1263	PTS System
JCP62_RS09820	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS09820	COG2190	(PTS) system
JCP62_RS09830	COG1132	(ABC) transporter
JCP62_RS09835	COG1132	(ABC) transporter
JCP62_RS09840	COG3763	UPF0154 protein
JCP62_RS09845	COG1914	H( )-stimulated, divalent metal cation uptake system
JCP62_RS09855	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
JCP62_RS09865	COG3328	transposase activity
JCP62_RS09900	COG1609	Transcriptional regulator
JCP62_RS09910	COG4980	gas vesicle protein
JCP62_RS09920	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JCP62_RS09925	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JCP62_RS09930	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JCP62_RS09935	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
JCP62_RS09940	COG1950	PFAM Membrane protein of
JCP62_RS09975	COG0704	Plays a role in the regulation of phosphate uptake
JCP62_RS09980	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JCP62_RS09985	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JCP62_RS09990	COG0581	inorganic phosphate transmembrane transporter activity
JCP62_RS09995	COG0573	inorganic phosphate transmembrane transporter activity
JCP62_RS10000	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JCP62_RS10005	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JCP62_RS10010	COG2177	Part of the ABC transporter FtsEX involved in
JCP62_RS10015	COG2884	Cell division ATP-binding protein ftsE
JCP62_RS10025	COG0653	protein targeting
JCP62_RS10040	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JCP62_RS10045	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCP62_RS10055	COG1739	Uncharacterized protein family UPF0029
JCP62_RS10060	COG2188	Transcriptional regulator
JCP62_RS10085	COG1940	carbohydrate kinase activity
JCP62_RS10105	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JCP62_RS10120	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JCP62_RS10125	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JCP62_RS10130	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JCP62_RS10135	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JCP62_RS10140	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JCP62_RS10145	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JCP62_RS10150	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JCP62_RS10155	COG0356	it plays a direct role in the translocation of protons across the membrane
JCP62_RS10165	COG1647	Serine aminopeptidase, S33
JCP62_RS10170	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JCP62_RS10175	COG2388	GCN5-related N-acetyl-transferase
JCP62_RS10185	COG1957	nucleoside hydrolase
JCP62_RS10195	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JCP62_RS10205	COG0149	triose-phosphate isomerase activity
JCP62_RS10210	COG0126	phosphoglycerate kinase activity
JCP62_RS10220	COG2390	Transcriptional regulator
JCP62_RS10225	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JCP62_RS10245	COG1595	DNA-templated transcription, initiation
JCP62_RS10260	COG0095	Lipoate-protein ligase
JCP62_RS10265	COG1078	dGTPase activity
JCP62_RS10270	COG0561	phosphatase activity
JCP62_RS10275	COG0494	nUDIX hydrolase
JCP62_RS10280	COG0346	lactoylglutathione lyase activity
JCP62_RS10290	COG2423	ornithine cyclodeaminase activity
JCP62_RS10295	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JCP62_RS10300	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JCP62_RS10305	COG1394	ATPase activity, coupled to movement of substances
JCP62_RS10310	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
JCP62_RS10315	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
JCP62_RS10320	COG1436	Produces ATP from ADP in the presence of a proton gradient across the membrane
JCP62_RS10325	COG1527	subunit (C
JCP62_RS10330	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
JCP62_RS10335	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JCP62_RS10340	COG1269	ATP hydrolysis coupled proton transport
JCP62_RS10350	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JCP62_RS10355	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
JCP62_RS10365	COG4152	abc transporter atp-binding protein
JCP62_RS10370	COG0322	excinuclease ABC activity
JCP62_RS10375	COG3118	belongs to the thioredoxin family
JCP62_RS10380	COG1193	negative regulation of DNA recombination
JCP62_RS10395	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JCP62_RS10410	COG1136	(ABC) transporter
JCP62_RS10420	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCP62_RS10450	COG1304	FMN binding
JCP62_RS10460	COG0281	malic enzyme
JCP62_RS10480	COG3906	Belongs to the UPF0473 family
JCP62_RS10485	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JCP62_RS10490	COG4472	Bacterial protein of unknown function (DUF965)
JCP62_RS10520	COG4555	ABC transporter
JCP62_RS10530	COG3689	TIGRFAM TIGR03943 family protein
JCP62_RS10535	COG0701	Predicted permease
JCP62_RS10540	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JCP62_RS10545	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
JCP62_RS10550	COG0488	(ABC) transporter
JCP62_RS10555	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
JCP62_RS10570	COG0395	ABC-type sugar transport system, permease component
JCP62_RS10585	COG0662	Cupin 2, conserved barrel domain protein
JCP62_RS10585	COG2207	Transcriptional regulator
JCP62_RS10590	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCP62_RS10600	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JCP62_RS10605	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JCP62_RS10610	COG0584	glycerophosphoryl diester phosphodiesterase
JCP62_RS10620	COG0740	serine-type endopeptidase activity
JCP62_RS10625	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JCP62_RS10635	COG1132	(ABC) transporter
JCP62_RS10645	COG5503	Protein of unknown function (DUF1447)
JCP62_RS10655	COG1278	Cold shock
JCP62_RS10660	COG2003	Belongs to the UPF0758 family
JCP62_RS10665	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCP62_RS10670	COG0285	dihydrofolate synthase activity
JCP62_RS10675	COG0525	valine-tRNA ligase activity
JCP62_RS10680	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
JCP62_RS10685	COG0301	tRNA thio-modification
JCP62_RS10690	COG1104	cysteine desulfurase activity
JCP62_RS10695	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
JCP62_RS10705	COG0561	phosphatase activity
JCP62_RS10710	COG1801	Protein of unknown function DUF72
JCP62_RS10730	COG3579	cysteine-type endopeptidase activity
JCP62_RS10790	COG1098	S1 RNA binding domain
JCP62_RS10795	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JCP62_RS10805	COG0492	ferredoxin-NADP+ reductase activity
JCP62_RS10810	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JCP62_RS10825	COG4470	Protein conserved in bacteria
JCP62_RS10830	COG0737	Belongs to the 5'-nucleotidase family
JCP62_RS10845	COG0590	tRNA wobble adenosine to inosine editing
JCP62_RS10850	COG2508	Transcriptional regulator
JCP62_RS10860	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JCP62_RS10860	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
JCP62_RS10880	COG2738	Putative neutral zinc metallopeptidase
JCP62_RS10885	COG2824	Alkylphosphonate utilization operon protein PhnA
JCP62_RS10890	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JCP62_RS10895	COG4109	DRTGG domain
JCP62_RS10900	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JCP62_RS10915	COG0577	efflux transmembrane transporter activity
JCP62_RS10920	COG1136	(ABC) transporter
JCP62_RS10930	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JCP62_RS10940	COG1288	antiporter activity
JCP62_RS10945	COG4821	SIS domain
JCP62_RS10960	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JCP62_RS10965	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JCP62_RS10970	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JCP62_RS10975	COG3716	PTS system mannose fructose sorbose family IID component
JCP62_RS10980	COG3715	PTS system
JCP62_RS11005	COG1132	(ABC) transporter
JCP62_RS11010	COG1132	(ABC) transporter
JCP62_RS11020	COG1803	Methylglyoxal synthase
JCP62_RS11025	COG3842	ATPase activity
JCP62_RS11035	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JCP62_RS11040	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JCP62_RS11045	COG0084	hydrolase, TatD family'
JCP62_RS11050	COG0531	amino acid
JCP62_RS11060	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JCP62_RS11060	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JCP62_RS11075	COG0675	Transposase, IS605 OrfB family
JCP62_RS11080	COG4608	Belongs to the ABC transporter superfamily
JCP62_RS11085	COG0444	Belongs to the ABC transporter superfamily
JCP62_RS11090	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JCP62_RS11095	COG0601	transmembrane transport
JCP62_RS11105	COG4166	transmembrane transport
JCP62_RS11125	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JCP62_RS11130	COG1280	lysine exporter protein (LysE YggA)
JCP62_RS11130	COG1674	ftsk spoiiie
JCP62_RS11135	COG2723	6-phospho-beta-galactosidase activity
JCP62_RS11140	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JCP62_RS11145	COG1126	abc transporter atp-binding protein
JCP62_RS11150	COG0765	amino acid transport
JCP62_RS11190	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JCP62_RS11200	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JCP62_RS11205	COG0009	L-threonylcarbamoyladenylate synthase
JCP62_RS11215	COG2890	protein-(glutamine-N5) methyltransferase activity
JCP62_RS11220	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JCP62_RS11225	COG1435	thymidine kinase activity
JCP62_RS11235	COG2226	methyltransferase
JCP62_RS11240	COG0681	Belongs to the peptidase S26 family
JCP62_RS11260	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JCP62_RS11265	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JCP62_RS11270	COG3442	glutamine amidotransferase
JCP62_RS11280	COG0246	Mannitol dehydrogenase
JCP62_RS11285	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS11290	COG2213	PTS system mannitol-specific
JCP62_RS11295	COG1131	(ABC) transporter
JCP62_RS11305	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS11310	COG3711	transcriptional antiterminator
JCP62_RS11315	COG2213	PTS system mannitol-specific
JCP62_RS11320	COG1482	cell wall glycoprotein biosynthetic process
JCP62_RS11335	COG1132	(ABC) transporter
JCP62_RS11355	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JCP62_RS11360	COG0628	permease
JCP62_RS11370	COG2706	6-phosphogluconolactonase activity
JCP62_RS11385	COG1368	sulfuric ester hydrolase activity
JCP62_RS11390	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JCP62_RS11395	COG2160	L-arabinose isomerase activity
JCP62_RS11400	COG0235	Class ii aldolase
JCP62_RS11420	COG3940	Belongs to the glycosyl hydrolase 43 family
JCP62_RS11425	COG3534	alpha-L-arabinofuranosidase
JCP62_RS11435	COG0395	ABC-type sugar transport system, permease component
JCP62_RS11440	COG1175	transmembrane transport
JCP62_RS11460	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JCP62_RS11465	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JCP62_RS11475	COG0789	Transcriptional regulator
JCP62_RS11480	COG1609	Transcriptional regulator
JCP62_RS11495	COG0459	protein refolding
JCP62_RS11500	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JCP62_RS11510	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCP62_RS11515	COG2910	NAD(P)H-binding
JCP62_RS11520	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JCP62_RS11535	COG5002	protein histidine kinase activity
JCP62_RS11540	COG0745	RESPONSE REGULATOR receiver
JCP62_RS11545	COG1307	EDD domain protein, DegV family
JCP62_RS11585	COG4175	Glycine betaine
JCP62_RS11585	COG3448	diguanylate cyclase activity
JCP62_RS11610	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JCP62_RS11615	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JCP62_RS11625	COG0628	permease
JCP62_RS11630	COG1285	pathogenesis
JCP62_RS11635	COG0363	glucosamine-6-phosphate deaminase activity
JCP62_RS11640	COG0488	(ABC) transporter
JCP62_RS11655	COG2814	Major facilitator Superfamily
JCP62_RS11665	COG0222	ribosome binding
JCP62_RS11670	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JCP62_RS11675	COG0081	regulation of translation
JCP62_RS11680	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JCP62_RS11685	COG1760	l-serine dehydratase
JCP62_RS11690	COG1760	l-serine dehydratase
JCP62_RS11695	COG1304	FMN binding
JCP62_RS11700	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JCP62_RS11705	COG0250	Participates in transcription elongation, termination and antitermination
JCP62_RS11710	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JCP62_RS11715	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JCP62_RS11730	COG1597	lipid kinase activity
JCP62_RS11745	COG1131	(ABC) transporter
JCP62_RS11750	COG4585	Histidine kinase
JCP62_RS11755	COG2197	response regulator
JCP62_RS11765	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JCP62_RS11775	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JCP62_RS11780	COG2226	methyltransferase
JCP62_RS11785	COG3142	Participates in the control of copper homeostasis
JCP62_RS11790	COG2239	Acts as a magnesium transporter
JCP62_RS11795	COG0564	pseudouridine synthase activity
JCP62_RS11800	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JCP62_RS11805	COG2357	RelA SpoT domain protein
JCP62_RS11810	COG4116	CYTH
JCP62_RS11835	COG4862	establishment of competence for transformation
JCP62_RS11840	COG1393	Belongs to the ArsC family
JCP62_RS11855	COG0419	ATPase involved in DNA repair
JCP62_RS11860	COG0420	3'-5' exonuclease activity
JCP62_RS11865	COG0204	Acyl-transferase
JCP62_RS11870	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JCP62_RS11875	COG2827	Endonuclease containing a URI domain
JCP62_RS11880	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JCP62_RS11880	COG2755	lipolytic protein G-D-S-L family
JCP62_RS11885	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCP62_RS11890	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JCP62_RS11895	COG0124	histidyl-tRNA synthetase
JCP62_RS11900	COG0667	Aldo Keto reductase
JCP62_RS11905	COG2124	cytochrome p450
JCP62_RS11910	COG1490	D-aminoacyl-tRNA deacylase activity
JCP62_RS11915	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JCP62_RS11920	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JCP62_RS11925	COG2264	protein methyltransferase activity
JCP62_RS11935	COG2094	Belongs to the DNA glycosylase MPG family
JCP62_RS11940	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JCP62_RS11955	COG0589	response to stress
JCP62_RS11965	COG0488	(ABC) transporter
JCP62_RS11970	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JCP62_RS11975	COG0827	DNA restriction-modification system
JCP62_RS12000	COG4537	Required for transformation and DNA binding
JCP62_RS12005	COG1459	type II secretion system
JCP62_RS12010	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JCP62_RS12015	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JCP62_RS12020	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JCP62_RS12030	COG4473	ABC transporter
JCP62_RS12035	COG1131	(ABC) transporter
JCP62_RS12040	COG0537	adenosine 5'-monophosphoramidase activity
JCP62_RS12050	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JCP62_RS12055	COG3481	metal-dependent phosphohydrolase, HD sub domain
JCP62_RS12060	COG4717	serine-type aminopeptidase activity
JCP62_RS12065	COG0420	3'-5' exonuclease activity
JCP62_RS12070	COG0561	phosphatase activity
JCP62_RS12095	COG2211	Major facilitator Superfamily
JCP62_RS12100	COG3507	Belongs to the glycosyl hydrolase 43 family
JCP62_RS12115	COG1073	alpha beta
JCP62_RS12125	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
JCP62_RS12130	COG1653	transport
JCP62_RS12140	COG4209	transmembrane transport
JCP62_RS12145	COG0395	ABC-type sugar transport system, permease component
JCP62_RS12150	COG2207	Transcriptional regulator
JCP62_RS12155	COG1609	Transcriptional regulator
JCP62_RS12160	COG0246	Mannitol dehydrogenase
JCP62_RS12165	COG2721	sulfolactate sulfo-lyase activity
JCP62_RS12170	COG1904	glucuronate isomerase
JCP62_RS12175	COG2755	lipolytic protein G-D-S-L family
JCP62_RS12185	COG1132	(ABC) transporter
JCP62_RS12190	COG3679	Belongs to the UPF0342 family
JCP62_RS12195	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JCP62_RS12200	COG0564	pseudouridine synthase activity
JCP62_RS12205	COG1940	carbohydrate kinase activity
JCP62_RS12210	COG0383	alpha-mannosidase activity
JCP62_RS12230	COG4753	response regulator
JCP62_RS12230	COG2207	Transcriptional regulator
JCP62_RS12235	COG2972	Histidine kinase
JCP62_RS12245	COG1653	transport
JCP62_RS12250	COG0395	ABC-type sugar transport system, permease component
JCP62_RS12255	COG1175	transmembrane transport
JCP62_RS12260	COG1187	pseudouridine synthase activity
JCP62_RS12265	COG2244	polysaccharide biosynthetic process
JCP62_RS12275	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JCP62_RS12280	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCP62_RS12295	COG3711	transcriptional antiterminator
JCP62_RS12295	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS12340	COG0789	Transcriptional regulator
JCP62_RS12340	COG4978	Transcriptional regulator
JCP62_RS12350	COG1132	(ABC) transporter
JCP62_RS12360	COG0495	leucyl-tRNA aminoacylation
JCP62_RS12365	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCP62_RS12365	COG1388	LysM domain
JCP62_RS12370	COG0671	phosphoesterase, PA-phosphatase related
JCP62_RS12375	COG1242	4 iron, 4 sulfur cluster binding
JCP62_RS12380	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JCP62_RS12430	COG0582	viral genome integration into host DNA
JCP62_RS12435	COG3328	transposase activity
JCP62_RS12450	COG1132	(ABC) transporter
JCP62_RS12455	COG1132	(ABC) transporter
JCP62_RS12470	COG0477	Major facilitator Superfamily
JCP62_RS12475	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JCP62_RS12630	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JCP62_RS12635	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JCP62_RS12640	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JCP62_RS12650	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JCP62_RS12655	COG0037	tRNA processing
JCP62_RS12660	COG1098	S1 RNA binding domain
JCP62_RS12670	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JCP62_RS12675	COG2244	polysaccharide biosynthetic process
JCP62_RS12680	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JCP62_RS12685	COG0193	aminoacyl-tRNA hydrolase activity
JCP62_RS12690	COG0039	L-malate dehydrogenase activity
JCP62_RS12700	COG0217	transcriptional regulatory protein
JCP62_RS12725	COG1792	Involved in formation and maintenance of cell shape
JCP62_RS12735	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JCP62_RS12740	COG1162	GTPase activity
JCP62_RS12745	COG2815	serine threonine protein kinase
JCP62_RS12745	COG0515	serine threonine protein kinase
JCP62_RS12750	COG0631	protein serine/threonine phosphatase activity
JCP62_RS12755	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JCP62_RS12755	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JCP62_RS12760	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JCP62_RS12765	COG0242	peptide deformylase activity
JCP62_RS12770	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JCP62_RS12775	COG1758	RNA polymerase activity
JCP62_RS12780	COG0194	GDP metabolic process
JCP62_RS12785	COG4372	Transposase
JCP62_RS12805	COG1561	YicC-like family, N-terminal region
JCP62_RS12815	COG1752	Esterase of the alpha-beta hydrolase superfamily
JCP62_RS12830	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JCP62_RS12835	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JCP62_RS12840	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JCP62_RS12845	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JCP62_RS12850	COG1121	(ABC) transporter
JCP62_RS12855	COG0803	Belongs to the bacterial solute-binding protein 9 family
JCP62_RS12855	COG3443	Belongs to the bacterial solute-binding protein 9 family
JCP62_RS12860	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JCP62_RS12865	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JCP62_RS12865	COG0392	lysyltransferase activity
JCP62_RS12870	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JCP62_RS12875	COG1418	mRNA catabolic process
JCP62_RS12880	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JCP62_RS12885	COG1058	Belongs to the CinA family
JCP62_RS12885	COG1546	Belongs to the CinA family
JCP62_RS12890	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JCP62_RS12895	COG1426	Protein conserved in bacteria
JCP62_RS12900	COG0612	Peptidase, M16
JCP62_RS12905	COG0612	Peptidase, M16
JCP62_RS12910	COG1970	mechanosensitive ion channel activity
JCP62_RS12915	COG2153	protein acetylation
JCP62_RS12920	COG4466	Protein conserved in bacteria
JCP62_RS12930	COG3688	RNA-binding protein containing a PIN domain
JCP62_RS12935	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JCP62_RS12940	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
JCP62_RS12945	COG0215	cysteine-tRNA ligase activity
JCP62_RS12950	COG1045	serine acetyltransferase
JCP62_RS12955	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JCP62_RS12960	COG4956	integral membrane protein (PIN domain superfamily)
JCP62_RS12970	COG0756	dUTP diphosphatase activity
JCP62_RS12975	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JCP62_RS12980	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JCP62_RS13015	COG0778	Nitroreductase
JCP62_RS13025	COG1388	LysM domain
JCP62_RS13025	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCP62_RS13030	COG4221	oxidoreductase activity
JCP62_RS13040	COG0583	DNA-binding transcription factor activity
JCP62_RS13045	COG3711	transcriptional antiterminator
JCP62_RS13050	COG1263	PTS System
JCP62_RS13050	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS13050	COG2190	(PTS) system
JCP62_RS13055	COG0702	epimerase
JCP62_RS13070	COG2207	Transcriptional regulator
JCP62_RS13070	COG3708	Transcriptional regulator
JCP62_RS13085	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
JCP62_RS13095	COG0604	alcohol dehydrogenase
JCP62_RS13100	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JCP62_RS13105	COG0842	Transport permease protein
JCP62_RS13110	COG1131	(ABC) transporter
JCP62_RS13120	COG2205	protein histidine kinase activity
JCP62_RS13125	COG0745	RESPONSE REGULATOR receiver
JCP62_RS13165	COG2188	Transcriptional regulator
JCP62_RS13170	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCP62_RS13175	COG3716	PTS system mannose fructose sorbose family IID component
JCP62_RS13180	COG3715	PTS system
JCP62_RS13190	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCP62_RS13195	COG2222	sugar isomerase
JCP62_RS13210	COG3716	PTS system mannose fructose sorbose family IID component
JCP62_RS13215	COG3715	PTS system
JCP62_RS13220	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS13235	COG1070	Carbohydrate kinase
JCP62_RS13245	COG1940	carbohydrate kinase activity
JCP62_RS13325	COG3328	transposase activity
JCP62_RS13355	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JCP62_RS13360	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JCP62_RS13365	COG0783	Belongs to the Dps family
JCP62_RS13370	COG1070	Carbohydrate kinase
JCP62_RS13375	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JCP62_RS13380	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JCP62_RS13385	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCP62_RS13395	COG1554	hydrolase, family 65, central catalytic
JCP62_RS13400	COG0673	inositol 2-dehydrogenase activity
JCP62_RS13405	COG1082	Xylose isomerase domain protein TIM barrel
JCP62_RS13410	COG1063	alcohol dehydrogenase
JCP62_RS13415	COG0395	ABC-type sugar transport system, permease component
JCP62_RS13420	COG1175	transmembrane transport
JCP62_RS13425	COG1653	transport
JCP62_RS13430	COG0366	Alpha amylase catalytic
JCP62_RS13435	COG1609	Transcriptional regulator
JCP62_RS13440	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JCP62_RS13445	COG0085	RNA polymerase activity
JCP62_RS13455	COG4120	Belongs to the binding-protein-dependent transport system permease family
JCP62_RS13465	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
JCP62_RS13465	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
JCP62_RS13480	COG0142	geranyltranstransferase activity
JCP62_RS13500	COG4939	FMN-binding domain protein
JCP62_RS13515	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JCP62_RS13520	COG0826	peptidase U32
JCP62_RS13525	COG0826	peptidase U32
JCP62_RS13530	COG0542	response to heat
JCP62_RS13535	COG4463	regulation of RNA biosynthetic process
JCP62_RS13600	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JCP62_RS13605	COG0517	IMP dehydrogenase activity
JCP62_RS13605	COG0516	GMP reductase activity
JCP62_RS13620	COG0012	GTP binding
JCP62_RS13625	COG4481	Protein conserved in bacteria
JCP62_RS13630	COG1475	DNA binding
JCP62_RS13635	COG1192	Involved in chromosome partitioning
JCP62_RS13640	COG0357	Ribosomal RNA small subunit methyltransferase G
JCP62_RS13645	COG0445	tRNA wobble uridine modification
JCP62_RS13650	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JCP62_RS13660	COG1847	R3H domain protein
JCP62_RS13665	COG0706	membrane insertase activity
JCP62_RS13670	COG0594	ribonuclease P activity
JCP62_RS13675	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JCP62_RS13735	COG1192	Involved in chromosome partitioning
JCP62_RS13755	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JCP62_RS13890	COG3344	reverse transcriptase
JCP62_RS13960	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JCP62_RS13980	COG0629	single-stranded DNA binding
JCP62_RS14090	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JCP62_RS14100	COG4372	Transposase
JCP62_RS14115	COG4372	Transposase
JCP62_RS14150	COG1940	carbohydrate kinase activity
JCP62_RS14160	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS14160	COG2190	(PTS) system
JCP62_RS14160	COG1263	PTS System
JCP62_RS14165	COG1621	beta-fructofuranosidase activity
JCP62_RS14170	COG1609	Transcriptional regulator
JCP62_RS14195	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
JCP62_RS14200	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS14200	COG2190	(PTS) system
JCP62_RS14200	COG1263	PTS System
JCP62_RS14205	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCP62_RS14205	COG1263	PTS System
JCP62_RS14205	COG2190	(PTS) system
JCP62_RS14235	COG4974	Belongs to the 'phage' integrase family
JCP62_RS14240	COG0582	viral genome integration into host DNA
JCP62_RS14260	COG0366	Alpha amylase catalytic
JCP62_RS14265	COG0366	Alpha amylase catalytic
JCP62_RS14320	COG1940	carbohydrate kinase activity
JCP62_RS14330	COG0395	ABC-type sugar transport system, permease component
JCP62_RS14335	COG1175	transmembrane transport
JCP62_RS14345	COG1609	Transcriptional regulator
JCP62_RS14390	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JCP62_RS14420	COG3976	FMN-binding domain protein
JCP62_RS14420	COG1053	succinate dehydrogenase
JCP62_RS14420	COG0431	NADPH-dependent FMN reductase
JCP62_RS14445	COG1288	antiporter activity
JCP62_RS14465	COG2188	Transcriptional regulator
JCP62_RS14470	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JCP62_RS14475	COG2222	sugar isomerase
JCP62_RS14495	COG4372	Transposase
JCP62_RS14520	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCP62_RS14525	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCP62_RS14525	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCP62_RS14530	COG2222	sugar isomerase
JCP62_RS14535	COG3716	PTS system mannose fructose sorbose family IID component
JCP62_RS14540	COG3715	PTS system
JCP62_RS14585	COG3328	transposase activity
JCP62_RS14600	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCP62_RS14600	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCP62_RS14610	COG3716	PTS system mannose fructose sorbose family IID component
JCP62_RS14615	COG3715	PTS system
JCP62_RS14635	COG2188	Transcriptional regulator
JCP62_RS14640	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JCP62_RS14685	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JCP62_RS14700	COG3409	Peptidoglycan-binding domain 1 protein
JCP62_RS14725	COG5002	protein histidine kinase activity
JCP62_RS14740	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JCP62_RS14755	COG3842	ATPase activity
JCP62_RS14765	COG0395	ABC-type sugar transport system, permease component
JCP62_RS14780	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JCP62_RS14800	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JCP62_RS14815	COG1136	(ABC) transporter
JCP62_RS14835	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JCP62_RS14910	COG2207	Transcriptional regulator