locus-tag	class	description
JCQ04_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JCQ04_RS00010	COG0592	DNA-directed DNA polymerase activity
JCQ04_RS00015	COG2501	S4 domain
JCQ04_RS00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JCQ04_RS00025	COG0187	DNA topoisomerase II activity
JCQ04_RS00035	COG0360	Binds together with S18 to 16S ribosomal RNA
JCQ04_RS00040	COG0629	single-stranded DNA binding
JCQ04_RS00045	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JCQ04_RS00060	COG0359	binds to the 23S rRNA
JCQ04_RS00065	COG0305	Participates in initiation and elongation during chromosome replication
JCQ04_RS00070	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JCQ04_RS00080	COG0488	(ABC) transporter
JCQ04_RS00090	COG0028	Belongs to the TPP enzyme family
JCQ04_RS00135	COG3328	transposase activity
JCQ04_RS00165	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS00175	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS00175	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS00185	COG3328	transposase activity
JCQ04_RS00215	COG1674	ftsk spoiiie
JCQ04_RS00220	COG2946	Replication initiation factor
JCQ04_RS00265	COG0741	lytic transglycosylase activity
JCQ04_RS00265	COG0791	NLP P60 protein
JCQ04_RS00310	COG0582	viral genome integration into host DNA
JCQ04_RS00315	COG0519	Catalyzes the synthesis of GMP from XMP
JCQ04_RS00315	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JCQ04_RS00320	COG1072	(Pantothenic acid kinase))
JCQ04_RS00325	COG2813	Specifically methylates the guanine in position
JCQ04_RS00330	COG1609	Transcriptional regulator
JCQ04_RS00335	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JCQ04_RS00340	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
JCQ04_RS00345	COG0295	cytidine deaminase activity
JCQ04_RS00350	COG1744	ABC transporter substrate-binding protein PnrA-like
JCQ04_RS00355	COG3845	ABC transporter
JCQ04_RS00360	COG4603	Belongs to the binding-protein-dependent transport system permease family
JCQ04_RS00365	COG1079	Belongs to the binding-protein-dependent transport system permease family
JCQ04_RS00370	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JCQ04_RS00380	COG0813	purine-nucleoside phosphorylase activity
JCQ04_RS00385	COG0588	phosphoglycerate mutase activity
JCQ04_RS00395	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JCQ04_RS00400	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JCQ04_RS00405	COG0049	tRNA binding
JCQ04_RS00410	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JCQ04_RS00415	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JCQ04_RS00420	COG0051	transcription antitermination factor activity, RNA binding
JCQ04_RS00425	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JCQ04_RS00430	COG0088	Forms part of the polypeptide exit tunnel
JCQ04_RS00435	COG0089	rRNA binding
JCQ04_RS00440	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JCQ04_RS00450	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JCQ04_RS00455	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JCQ04_RS00460	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JCQ04_RS00465	COG0255	Belongs to the universal ribosomal protein uL29 family
JCQ04_RS00470	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JCQ04_RS00475	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JCQ04_RS00480	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JCQ04_RS00485	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JCQ04_RS00490	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JCQ04_RS00495	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JCQ04_RS00500	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JCQ04_RS00505	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JCQ04_RS00510	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JCQ04_RS00515	COG1841	ribosomal large subunit assembly
JCQ04_RS00520	COG0200	Binds to the 23S rRNA
JCQ04_RS00525	COG0201	protein transport
JCQ04_RS00530	COG0563	adenylate kinase activity
JCQ04_RS00535	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JCQ04_RS00540	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JCQ04_RS00545	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JCQ04_RS00550	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JCQ04_RS00555	COG0202	RNA polymerase activity
JCQ04_RS00560	COG0203	ribosomal protein L17
JCQ04_RS00565	COG1122	ATPase activity
JCQ04_RS00570	COG1122	ATPase activity
JCQ04_RS00580	COG0101	tRNA pseudouridine synthase activity
JCQ04_RS00590	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JCQ04_RS00600	COG1461	Dihydroxyacetone kinase
JCQ04_RS00605	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JCQ04_RS00610	COG0416	fatty acid biosynthetic process
JCQ04_RS00615	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JCQ04_RS00625	COG4608	Belongs to the ABC transporter superfamily
JCQ04_RS00630	COG0601	transmembrane transport
JCQ04_RS00645	COG0571	ribonuclease III activity
JCQ04_RS00650	COG1196	nuclear chromosome segregation
JCQ04_RS00655	COG0561	phosphatase activity
JCQ04_RS00660	COG0552	protein localization to endoplasmic reticulum
JCQ04_RS00665	COG2918	glutathione biosynthetic process
JCQ04_RS00665	COG1181	Belongs to the D-alanine--D-alanine ligase family
JCQ04_RS00675	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JCQ04_RS00680	COG4605	iron ion homeostasis
JCQ04_RS00685	COG4604	ABC transporter, ATP-binding protein
JCQ04_RS00690	COG4607	ABC-type enterochelin transport system periplasmic component
JCQ04_RS00715	COG4886	Leucine-rich repeat (LRR) protein
JCQ04_RS00715	COG4932	domain protein
JCQ04_RS00730	COG3328	transposase activity
JCQ04_RS00750	COG1380	Effector of murein hydrolase LrgA
JCQ04_RS00755	COG1346	cytolysis
JCQ04_RS00780	COG1028	Short-chain dehydrogenase reductase Sdr
JCQ04_RS00790	COG1268	BioY protein
JCQ04_RS00795	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JCQ04_RS00810	COG0561	phosphatase activity
JCQ04_RS00815	COG1692	metallophosphoesterase
JCQ04_RS00825	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JCQ04_RS00835	COG0424	maF-like protein
JCQ04_RS00840	COG1263	PTS System
JCQ04_RS00840	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS00845	COG2188	Transcriptional regulator
JCQ04_RS00855	COG0632	four-way junction helicase activity
JCQ04_RS00860	COG2255	four-way junction helicase activity
JCQ04_RS00870	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JCQ04_RS00880	COG3328	transposase activity
JCQ04_RS00885	COG1114	Component of the transport system for branched-chain amino acids
JCQ04_RS00895	COG1113	amino acid transport
JCQ04_RS00900	COG1126	abc transporter atp-binding protein
JCQ04_RS00905	COG0765	amino acid transport
JCQ04_RS00915	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JCQ04_RS00920	COG0110	maltose O-acetyltransferase activity
JCQ04_RS00925	COG1827	regulation of RNA biosynthetic process
JCQ04_RS00930	COG0242	peptide deformylase activity
JCQ04_RS00935	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JCQ04_RS00940	COG1185	polyribonucleotide nucleotidyltransferase activity
JCQ04_RS00950	COG3158	transport of potassium into the cell
JCQ04_RS00955	COG1253	flavin adenine dinucleotide binding
JCQ04_RS00960	COG0534	Mate efflux family protein
JCQ04_RS00970	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JCQ04_RS00975	COG1187	pseudouridine synthase activity
JCQ04_RS00980	COG1011	Hydrolase
JCQ04_RS00985	COG0572	uridine kinase
JCQ04_RS01010	COG1671	Belongs to the UPF0178 family
JCQ04_RS01020	COG1181	Belongs to the D-alanine--D-alanine ligase family
JCQ04_RS01025	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JCQ04_RS01035	COG0736	holo-[acyl-carrier-protein] synthase activity
JCQ04_RS01040	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JCQ04_RS01045	COG2337	Toxic component of a toxin-antitoxin (TA) module
JCQ04_RS01050	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JCQ04_RS01055	COG0604	alcohol dehydrogenase
JCQ04_RS01055	COG3321	synthase
JCQ04_RS01065	COG0531	amino acid
JCQ04_RS01090	COG1174	glycine betaine transport
JCQ04_RS01110	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JCQ04_RS01125	COG0343	queuine tRNA-ribosyltransferase activity
JCQ04_RS01130	COG1862	Preprotein translocase
JCQ04_RS01135	COG1454	alcohol dehydrogenase
JCQ04_RS01135	COG1012	belongs to the aldehyde dehydrogenase family
JCQ04_RS01145	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
JCQ04_RS01175	COG1917	Cupin 2, conserved barrel domain protein
JCQ04_RS01175	COG2207	Transcriptional regulator
JCQ04_RS01180	COG1070	Carbohydrate kinase
JCQ04_RS01185	COG4806	L-rhamnose isomerase
JCQ04_RS01190	COG0235	Class ii aldolase
JCQ04_RS01195	COG3254	rhamnose metabolic process
JCQ04_RS01200	COG1454	alcohol dehydrogenase
JCQ04_RS01205	COG1414	Transcriptional regulator
JCQ04_RS01210	COG0800	Aldolase
JCQ04_RS01220	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
JCQ04_RS01225	COG1028	Short-chain dehydrogenase reductase Sdr
JCQ04_RS01230	COG1304	FMN binding
JCQ04_RS01245	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JCQ04_RS01250	COG1428	Deoxynucleoside kinase
JCQ04_RS01270	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JCQ04_RS01275	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JCQ04_RS01280	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JCQ04_RS01310	COG0824	Thioesterase
JCQ04_RS01315	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JCQ04_RS01335	COG1363	Peptidase, m42
JCQ04_RS01340	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JCQ04_RS01345	COG0589	response to stress
JCQ04_RS01350	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JCQ04_RS01355	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JCQ04_RS01360	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JCQ04_RS01365	COG4807	Protein conserved in bacteria
JCQ04_RS01375	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JCQ04_RS01390	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JCQ04_RS01455	COG1368	sulfuric ester hydrolase activity
JCQ04_RS01465	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JCQ04_RS01475	COG0101	tRNA pseudouridine synthase activity
JCQ04_RS01490	COG3328	transposase activity
JCQ04_RS01510	COG0667	Aldo Keto reductase
JCQ04_RS01515	COG2186	Transcriptional regulator
JCQ04_RS01520	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS01525	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS01535	COG1447	Phosphotransferase system cellobiose-specific component IIA
JCQ04_RS01555	COG1063	alcohol dehydrogenase
JCQ04_RS01565	COG4716	Myosin-crossreactive antigen
JCQ04_RS01605	COG1113	amino acid transport
JCQ04_RS01630	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JCQ04_RS01640	COG3052	prosthetic group binding
JCQ04_RS01700	COG1051	belongs to the nudix hydrolase family
JCQ04_RS01705	COG1846	Transcriptional regulator
JCQ04_RS01730	COG2252	PERMEase
JCQ04_RS01735	COG0366	Alpha amylase catalytic
JCQ04_RS01740	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS01750	COG2190	(PTS) system
JCQ04_RS01750	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS01750	COG1263	PTS System
JCQ04_RS01755	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS01765	COG1902	pentaerythritol trinitrate reductase activity
JCQ04_RS01775	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCQ04_RS01785	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JCQ04_RS01790	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JCQ04_RS01795	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JCQ04_RS01805	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JCQ04_RS01815	COG1937	Protein conserved in bacteria
JCQ04_RS01820	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JCQ04_RS01825	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCQ04_RS01830	COG3973	AAA domain
JCQ04_RS01855	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
JCQ04_RS01860	COG2376	Dihydroxyacetone kinase
JCQ04_RS01865	COG1461	Dihydroxyacetone kinase
JCQ04_RS01875	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JCQ04_RS01885	COG1131	(ABC) transporter
JCQ04_RS01890	COG1309	transcriptional regulator
JCQ04_RS01910	COG0531	amino acid
JCQ04_RS01920	COG1609	Transcriptional regulator
JCQ04_RS01930	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCQ04_RS01940	COG2190	(PTS) system
JCQ04_RS01940	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS01940	COG1263	PTS System
JCQ04_RS01965	COG3479	Phenolic acid decarboxylase
JCQ04_RS01970	COG1695	Transcriptional regulator
JCQ04_RS01980	COG2814	Major facilitator Superfamily
JCQ04_RS02000	COG0163	prenyltransferase activity
JCQ04_RS02005	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JCQ04_RS02015	COG0577	efflux transmembrane transporter activity
JCQ04_RS02015	COG1136	(ABC) transporter
JCQ04_RS02035	COG1811	Na channel or pump
JCQ04_RS02070	COG1136	(ABC) transporter
JCQ04_RS02085	COG3942	CHAP domain
JCQ04_RS02085	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCQ04_RS02090	COG2190	(PTS) system
JCQ04_RS02090	COG1263	PTS System
JCQ04_RS02090	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS02095	COG1869	D-ribose catabolic process
JCQ04_RS02105	COG1609	Transcriptional regulator
JCQ04_RS02125	COG0366	Alpha amylase catalytic
JCQ04_RS02130	COG0628	permease
JCQ04_RS02135	COG0803	Belongs to the bacterial solute-binding protein 9 family
JCQ04_RS02135	COG3443	Belongs to the bacterial solute-binding protein 9 family
JCQ04_RS02160	COG1428	Deoxynucleoside kinase
JCQ04_RS02170	COG0210	DNA helicase
JCQ04_RS02180	COG1393	Belongs to the ArsC family
JCQ04_RS02185	COG1393	Belongs to the ArsC family
JCQ04_RS02190	COG2801	Transposase and inactivated derivatives
JCQ04_RS02195	COG2963	transposase activity
JCQ04_RS02215	COG0386	Belongs to the glutathione peroxidase family
JCQ04_RS02220	COG1854	S-ribosylhomocysteine lyase activity
JCQ04_RS02225	COG0626	cystathionine gamma-synthase activity
JCQ04_RS02235	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JCQ04_RS02240	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JCQ04_RS02250	COG0019	diaminopimelate decarboxylase activity
JCQ04_RS02255	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JCQ04_RS02265	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JCQ04_RS02270	COG2171	N-acyltransferase activity
JCQ04_RS02275	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JCQ04_RS02280	COG0527	aspartate kinase activity
JCQ04_RS02285	COG1473	amidohydrolase
JCQ04_RS02290	COG0436	Aminotransferase
JCQ04_RS02295	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCQ04_RS02315	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JCQ04_RS02320	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JCQ04_RS02335	COG2207	Transcriptional regulator
JCQ04_RS02340	COG2249	NAD(P)H dehydrogenase (quinone) activity
JCQ04_RS02355	COG1113	amino acid transport
JCQ04_RS02360	COG1121	(ABC) transporter
JCQ04_RS02365	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JCQ04_RS02380	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JCQ04_RS02385	COG2823	Periplasmic or secreted lipoprotein
JCQ04_RS02385	COG1652	LysM domain
JCQ04_RS02395	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JCQ04_RS02400	COG0477	Major facilitator Superfamily
JCQ04_RS02410	COG1438	arginine binding
JCQ04_RS02425	COG1764	response to oxidative stress
JCQ04_RS02430	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JCQ04_RS02435	COG1335	isochorismatase
JCQ04_RS02450	COG2135	peptidase activity
JCQ04_RS02485	COG3546	catalase activity
JCQ04_RS02495	COG1175	transmembrane transport
JCQ04_RS02500	COG0395	ABC-type sugar transport system, permease component
JCQ04_RS02540	COG0745	RESPONSE REGULATOR receiver
JCQ04_RS02545	COG2205	protein histidine kinase activity
JCQ04_RS02550	COG4975	Glucose uptake
JCQ04_RS02555	COG0531	amino acid
JCQ04_RS02560	COG3853	Toxic anion resistance protein (TelA)
JCQ04_RS02580	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JCQ04_RS02585	COG1335	isochorismatase
JCQ04_RS02595	COG3590	peptidase
JCQ04_RS02605	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JCQ04_RS02610	COG1104	cysteine desulfurase activity
JCQ04_RS02630	COG0482	sulfurtransferase activity
JCQ04_RS02640	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JCQ04_RS02645	COG2814	Major facilitator Superfamily
JCQ04_RS02665	COG0463	Glycosyl transferase, family 2
JCQ04_RS02670	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JCQ04_RS02675	COG2855	membrane
JCQ04_RS02685	COG0583	DNA-binding transcription factor activity
JCQ04_RS02690	COG0772	Belongs to the SEDS family
JCQ04_RS02695	COG1393	Belongs to the ArsC family
JCQ04_RS02700	COG0509	glycine decarboxylation via glycine cleavage system
JCQ04_RS02705	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JCQ04_RS02710	COG2011	ABC-type metal ion transport system permease component
JCQ04_RS02715	COG1464	Belongs to the NlpA lipoprotein family
JCQ04_RS02725	COG0719	Fe-S assembly protein
JCQ04_RS02730	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JCQ04_RS02740	COG0719	Fe-S assembly protein
JCQ04_RS02820	COG1136	(ABC) transporter
JCQ04_RS02820	COG0577	efflux transmembrane transporter activity
JCQ04_RS02830	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JCQ04_RS02840	COG1597	lipid kinase activity
JCQ04_RS02875	COG1733	regulation of RNA biosynthetic process
JCQ04_RS02885	COG3764	Sortase (surface protein transpeptidase)
JCQ04_RS02890	COG3711	transcriptional antiterminator
JCQ04_RS02895	COG1263	PTS System
JCQ04_RS02895	COG2190	(PTS) system
JCQ04_RS02895	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS02900	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS02905	COG2188	Transcriptional regulator
JCQ04_RS02915	COG1611	Belongs to the LOG family
JCQ04_RS02925	COG1428	Deoxynucleoside kinase
JCQ04_RS02945	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS02955	COG1368	sulfuric ester hydrolase activity
JCQ04_RS02965	COG0105	UTP biosynthetic process
JCQ04_RS02970	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCQ04_RS02975	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCQ04_RS02980	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JCQ04_RS02985	COG2011	ABC-type metal ion transport system permease component
JCQ04_RS02990	COG1464	Belongs to the NlpA lipoprotein family
JCQ04_RS03000	COG1757	Na H antiporter
JCQ04_RS03015	COG1113	amino acid transport
JCQ04_RS03025	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JCQ04_RS03030	COG1929	Belongs to the glycerate kinase type-1 family
JCQ04_RS03035	COG0488	(ABC) transporter
JCQ04_RS03050	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
JCQ04_RS03055	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS03055	COG1263	PTS System
JCQ04_RS03070	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JCQ04_RS03075	COG1131	(ABC) transporter
JCQ04_RS03095	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
JCQ04_RS03110	COG0346	lactoylglutathione lyase activity
JCQ04_RS03135	COG0561	phosphatase activity
JCQ04_RS03140	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JCQ04_RS03145	COG0280	phosphate acetyltransferase
JCQ04_RS03150	COG0802	atpase or kinase
JCQ04_RS03155	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JCQ04_RS03165	COG0708	Exodeoxyribonuclease III
JCQ04_RS03175	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JCQ04_RS03200	COG1053	succinate dehydrogenase
JCQ04_RS03210	COG0702	epimerase
JCQ04_RS03215	COG4684	Psort location CytoplasmicMembrane, score
JCQ04_RS03220	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JCQ04_RS03225	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JCQ04_RS03230	COG0604	alcohol dehydrogenase
JCQ04_RS03240	COG3842	ATPase activity
JCQ04_RS03245	COG1176	ABC-type spermidine putrescine transport system, permease component I
JCQ04_RS03250	COG1177	transmembrane transport
JCQ04_RS03255	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JCQ04_RS03260	COG3829	transcription factor binding
JCQ04_RS03275	COG3715	PTS system
JCQ04_RS03280	COG3716	PTS system mannose fructose sorbose family IID component
JCQ04_RS03295	COG1940	carbohydrate kinase activity
JCQ04_RS03325	COG0582	viral genome integration into host DNA
JCQ04_RS03330	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JCQ04_RS03340	COG0789	Transcriptional regulator
JCQ04_RS03350	COG0504	CTP synthase activity
JCQ04_RS03360	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JCQ04_RS03365	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JCQ04_RS03370	COG0254	rRNA binding
JCQ04_RS03390	COG1349	DNA-binding transcription factor activity
JCQ04_RS03400	COG2814	Major facilitator Superfamily
JCQ04_RS03410	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JCQ04_RS03430	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JCQ04_RS03435	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JCQ04_RS03440	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JCQ04_RS03445	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JCQ04_RS03450	COG3870	Protein conserved in bacteria
JCQ04_RS03455	COG0470	DNA polymerase III
JCQ04_RS03460	COG1774	PSP1 C-terminal conserved region
JCQ04_RS03465	COG4467	Involved in initiation control of chromosome replication
JCQ04_RS03480	COG0602	queuosine metabolic process
JCQ04_RS03485	COG1328	CTP reductase activity
JCQ04_RS03490	COG1136	(ABC) transporter
JCQ04_RS03495	COG0577	efflux transmembrane transporter activity
JCQ04_RS03505	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JCQ04_RS03510	COG1696	Membrane protein involved in D-alanine export
JCQ04_RS03515	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JCQ04_RS03520	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JCQ04_RS03525	COG1363	Peptidase, m42
JCQ04_RS03535	COG1234	tRNA 3'-trailer cleavage
JCQ04_RS03540	COG0095	Lipoate-protein ligase
JCQ04_RS03550	COG3328	transposase activity
JCQ04_RS03570	COG3759	membrane
JCQ04_RS03575	COG0659	secondary active sulfate transmembrane transporter activity
JCQ04_RS03585	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JCQ04_RS03595	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JCQ04_RS03605	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCQ04_RS03605	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCQ04_RS03610	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS03610	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCQ04_RS03620	COG3715	PTS system
JCQ04_RS03625	COG3716	PTS system mannose fructose sorbose family IID component
JCQ04_RS03635	COG2261	transglycosylase associated protein
JCQ04_RS03640	COG0006	proline dipeptidase activity
JCQ04_RS03645	COG1302	Protein conserved in bacteria
JCQ04_RS03650	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JCQ04_RS03655	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JCQ04_RS03660	COG1570	exodeoxyribonuclease VII activity
JCQ04_RS03665	COG1722	exodeoxyribonuclease VII activity
JCQ04_RS03675	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JCQ04_RS03680	COG1438	arginine binding
JCQ04_RS03685	COG0497	DNA recombination
JCQ04_RS03725	COG0768	penicillin binding
JCQ04_RS03760	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JCQ04_RS03765	COG1799	cell septum assembly
JCQ04_RS03775	COG2302	S4 RNA-binding domain
JCQ04_RS03780	COG3599	regulation of cell shape
JCQ04_RS03785	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JCQ04_RS03790	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JCQ04_RS03810	COG0673	inositol 2-dehydrogenase activity
JCQ04_RS03815	COG0513	Belongs to the DEAD box helicase family
JCQ04_RS03820	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCQ04_RS03820	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCQ04_RS03825	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS03830	COG1447	Phosphotransferase system cellobiose-specific component IIA
JCQ04_RS03835	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS03880	COG2309	aminopeptidase activity
JCQ04_RS03890	COG0716	FMN binding
JCQ04_RS03895	COG0024	Methionine aminopeptidase
JCQ04_RS03900	COG1295	ribonuclease BN
JCQ04_RS03905	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JCQ04_RS03920	COG1215	transferase activity, transferring glycosyl groups
JCQ04_RS03925	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JCQ04_RS03935	COG1088	dTDP-glucose 4,6-dehydratase activity
JCQ04_RS03940	COG1091	dTDP-4-dehydrorhamnose reductase activity
JCQ04_RS03955	COG1682	transport, permease protein
JCQ04_RS03965	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JCQ04_RS03970	COG1216	Glycosyl transferase, family 2
JCQ04_RS03970	COG0438	transferase activity, transferring glycosyl groups
JCQ04_RS03985	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JCQ04_RS03990	COG0463	Glycosyl transferase, family 2
JCQ04_RS03995	COG0438	transferase activity, transferring glycosyl groups
JCQ04_RS04020	COG1086	Polysaccharide biosynthesis protein
JCQ04_RS04025	COG2089	acid synthase
JCQ04_RS04030	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JCQ04_RS04040	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JCQ04_RS04055	COG1083	cytidylyl-transferase
JCQ04_RS04105	COG3328	transposase activity
JCQ04_RS04120	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JCQ04_RS04125	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JCQ04_RS04135	COG4585	Histidine kinase
JCQ04_RS04145	COG0569	domain protein
JCQ04_RS04175	COG2246	polysaccharide biosynthetic process
JCQ04_RS04180	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JCQ04_RS04195	COG1316	TRANSCRIPTIONal
JCQ04_RS04200	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
JCQ04_RS04205	COG3397	chitin binding
JCQ04_RS04210	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JCQ04_RS04215	COG2137	regulation of response to DNA damage stimulus
JCQ04_RS04220	COG1194	a g-specific adenine glycosylase
JCQ04_RS04225	COG3557	Belongs to the UPF0374 family
JCQ04_RS04235	COG0628	permease
JCQ04_RS04240	COG1253	flavin adenine dinucleotide binding
JCQ04_RS04245	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JCQ04_RS04265	COG0542	response to heat
JCQ04_RS04270	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCQ04_RS04275	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JCQ04_RS04285	COG0438	transferase activity, transferring glycosyl groups
JCQ04_RS04290	COG2084	Dehydrogenase
JCQ04_RS04295	COG4703	Protein of unknown function (DUF1797)
JCQ04_RS04300	COG0322	excinuclease ABC activity
JCQ04_RS04305	COG1846	Transcriptional regulator
JCQ04_RS04310	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JCQ04_RS04320	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JCQ04_RS04330	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JCQ04_RS04340	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JCQ04_RS04345	COG0439	Biotin carboxylase
JCQ04_RS04350	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JCQ04_RS04355	COG0825	malonyl-CoA metabolic process
JCQ04_RS04360	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JCQ04_RS04365	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JCQ04_RS04370	COG1534	Rna-binding protein
JCQ04_RS04375	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JCQ04_RS04380	COG1713	HD superfamily hydrolase involved in NAD metabolism
JCQ04_RS04385	COG0799	negative regulation of ribosome biogenesis
JCQ04_RS04390	COG2226	methyltransferase
JCQ04_RS04395	COG1323	Belongs to the UPF0348 family
JCQ04_RS04400	COG0217	transcriptional regulatory protein
JCQ04_RS04410	COG3973	AAA domain
JCQ04_RS04415	COG2217	Heavy metal translocating P-type atpase
JCQ04_RS04420	COG1942	4-Oxalocrotonate Tautomerase
JCQ04_RS04425	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JCQ04_RS04435	COG1737	Transcriptional regulator
JCQ04_RS04440	COG0768	penicillin binding
JCQ04_RS04445	COG0561	phosphatase activity
JCQ04_RS04450	COG2252	PERMEase
JCQ04_RS04455	COG2814	Major facilitator Superfamily
JCQ04_RS04465	COG0587	DNA-directed DNA polymerase activity
JCQ04_RS04470	COG0205	6-phosphofructokinase activity
JCQ04_RS04480	COG0583	DNA-binding transcription factor activity
JCQ04_RS04490	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JCQ04_RS04500	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JCQ04_RS04505	COG0745	RESPONSE REGULATOR receiver
JCQ04_RS04510	COG5002	protein histidine kinase activity
JCQ04_RS04615	COG3711	transcriptional antiterminator
JCQ04_RS04625	COG2190	(PTS) system
JCQ04_RS04625	COG1263	PTS System
JCQ04_RS04625	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS04630	COG1486	melibiose metabolic process
JCQ04_RS04635	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS04635	COG1263	PTS System
JCQ04_RS04635	COG2190	(PTS) system
JCQ04_RS04640	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS04660	COG1349	DNA-binding transcription factor activity
JCQ04_RS04685	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
JCQ04_RS04690	COG3623	hexulose-6-phosphate isomerase
JCQ04_RS04700	COG0456	acetyltransferase
JCQ04_RS04720	COG3711	transcriptional antiterminator
JCQ04_RS04740	COG3775	system Galactitol-specific IIC component
JCQ04_RS04755	COG0400	carboxylic ester hydrolase activity
JCQ04_RS04760	COG0346	lactoylglutathione lyase activity
JCQ04_RS04765	COG2188	Transcriptional regulator
JCQ04_RS04770	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS04775	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS04780	COG0589	response to stress
JCQ04_RS04795	COG1393	Belongs to the ArsC family
JCQ04_RS04805	COG0351	phosphomethylpyrimidine kinase
JCQ04_RS04810	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JCQ04_RS04815	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCQ04_RS04825	COG3425	synthase
JCQ04_RS04830	COG0183	Belongs to the thiolase family
JCQ04_RS04845	COG0656	L-ascorbic acid biosynthetic process
JCQ04_RS04865	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JCQ04_RS04865	COG0392	lysyltransferase activity
JCQ04_RS04870	COG0596	Alpha beta hydrolase
JCQ04_RS04875	COG0741	lytic transglycosylase activity
JCQ04_RS04885	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCQ04_RS04890	COG0358	DNA primase activity
JCQ04_RS04895	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JCQ04_RS04905	COG2996	Protein conserved in bacteria
JCQ04_RS04910	COG0735	belongs to the Fur family
JCQ04_RS04920	COG4974	Belongs to the 'phage' integrase family
JCQ04_RS04930	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
JCQ04_RS04935	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JCQ04_RS04940	COG1187	pseudouridine synthase activity
JCQ04_RS04945	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JCQ04_RS04950	COG1288	antiporter activity
JCQ04_RS04955	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JCQ04_RS04975	COG0514	ATP-dependent DNA helicase (RecQ)
JCQ04_RS04985	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JCQ04_RS04990	COG0539	negative regulation of cytoplasmic translation
JCQ04_RS04995	COG1160	GTP binding
JCQ04_RS05000	COG0776	regulation of translation
JCQ04_RS05015	COG0457	Tetratricopeptide repeat
JCQ04_RS05020	COG5582	Belongs to the UPF0302 family
JCQ04_RS05025	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCQ04_RS05030	COG1694	Mazg nucleotide pyrophosphohydrolase
JCQ04_RS05035	COG0617	tRNA 3'-terminal CCA addition
JCQ04_RS05055	COG0025	NhaP-type Na H and K H
JCQ04_RS05060	COG0488	(ABC) transporter
JCQ04_RS05065	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JCQ04_RS05075	COG1272	protein, Hemolysin III
JCQ04_RS05080	COG1307	EDD domain protein, DegV family
JCQ04_RS05085	COG2755	lipolytic protein G-D-S-L family
JCQ04_RS05090	COG4698	Protein conserved in bacteria
JCQ04_RS05100	COG4479	Belongs to the UPF0346 family
JCQ04_RS05105	COG0681	Belongs to the peptidase S26 family
JCQ04_RS05125	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JCQ04_RS05130	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JCQ04_RS05135	COG0758	DNA mediated transformation
JCQ04_RS05140	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JCQ04_RS05145	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
JCQ04_RS05150	COG4974	Belongs to the 'phage' integrase family
JCQ04_RS05155	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JCQ04_RS05160	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JCQ04_RS05180	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JCQ04_RS05185	COG1832	CoA-binding protein
JCQ04_RS05190	COG0187	DNA topoisomerase II activity
JCQ04_RS05200	COG1882	Formate acetyltransferase
JCQ04_RS05205	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JCQ04_RS05210	COG1227	inorganic diphosphatase activity
JCQ04_RS05230	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
JCQ04_RS05240	COG1073	alpha beta
JCQ04_RS05245	COG1609	Transcriptional regulator
JCQ04_RS05255	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCQ04_RS05265	COG1732	Glycine betaine
JCQ04_RS05280	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JCQ04_RS05290	COG1116	anion transmembrane transporter activity
JCQ04_RS05295	COG0084	hydrolase, TatD family'
JCQ04_RS05300	COG1388	LysM domain
JCQ04_RS05300	COG3942	CHAP domain
JCQ04_RS05320	COG3328	transposase activity
JCQ04_RS05350	COG0436	Aminotransferase
JCQ04_RS05370	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JCQ04_RS05375	COG4565	transcriptional regulatory protein
JCQ04_RS05380	COG3290	protein histidine kinase activity
JCQ04_RS05385	COG3290	protein histidine kinase activity
JCQ04_RS05395	COG2268	Band 7 protein
JCQ04_RS05410	COG0673	inositol 2-dehydrogenase activity
JCQ04_RS05420	COG1876	peptidase activity
JCQ04_RS05425	COG1388	LysM domain
JCQ04_RS05425	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCQ04_RS05435	COG1653	transport
JCQ04_RS05440	COG1175	transmembrane transport
JCQ04_RS05445	COG0395	ABC-type sugar transport system, permease component
JCQ04_RS05455	COG0673	inositol 2-dehydrogenase activity
JCQ04_RS05460	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JCQ04_RS05465	COG2233	PERMEase
JCQ04_RS05470	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JCQ04_RS05475	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JCQ04_RS05480	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JCQ04_RS05490	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JCQ04_RS05495	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JCQ04_RS05500	COG0047	phosphoribosylformylglycinamidine synthase activity
JCQ04_RS05505	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JCQ04_RS05515	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JCQ04_RS05520	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JCQ04_RS05525	COG0138	bifunctional purine biosynthesis protein purh
JCQ04_RS05530	COG0151	Belongs to the GarS family
JCQ04_RS05535	COG4989	oxidoreductase activity
JCQ04_RS05545	COG2972	Histidine kinase
JCQ04_RS05555	COG4213	ABC transporter substrate-binding protein
JCQ04_RS05565	COG4214	carbohydrate transport
JCQ04_RS05570	COG0516	GMP reductase activity
JCQ04_RS05575	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JCQ04_RS05585	COG0022	dehydrogenase e1 component
JCQ04_RS05600	COG4476	Belongs to the UPF0223 family
JCQ04_RS05605	COG0483	inositol monophosphate 1-phosphatase activity
JCQ04_RS05610	COG1217	gtp-binding protein TYPA
JCQ04_RS05615	COG0514	ATP-dependent DNA helicase (RecQ)
JCQ04_RS05620	COG4838	Belongs to the UPF0358 family
JCQ04_RS05625	COG0772	Belongs to the SEDS family
JCQ04_RS05630	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JCQ04_RS05645	COG4471	UPF0298 protein
JCQ04_RS05650	COG0742	ribosomal rna small subunit methyltransferase
JCQ04_RS05655	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JCQ04_RS05660	COG3480	Lon protease (S16) C-terminal proteolytic domain
JCQ04_RS05665	COG1596	polysaccharide export
JCQ04_RS05665	COG1555	photosystem II stabilization
JCQ04_RS05680	COG2131	deaminase
JCQ04_RS05685	COG0658	competence protein
JCQ04_RS05685	COG2333	competence protein COMEC
JCQ04_RS05690	COG1466	dna polymerase III delta subunit
JCQ04_RS05695	COG0268	Binds directly to 16S ribosomal RNA
JCQ04_RS05705	COG2707	UPF0756 membrane protein
JCQ04_RS05710	COG2217	Heavy metal translocating P-type atpase
JCQ04_RS05715	COG1968	undecaprenyl-diphosphatase activity
JCQ04_RS05735	COG1666	GTP binding
JCQ04_RS05740	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCQ04_RS05745	COG2151	metal-sulfur cluster biosynthetic enzyme
JCQ04_RS05760	COG1388	LysM domain
JCQ04_RS05760	COG3942	CHAP domain
JCQ04_RS05815	COG4990	cell redox homeostasis
JCQ04_RS05835	COG3104	oligopeptide transport
JCQ04_RS05845	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
JCQ04_RS05850	COG1074	ATP-dependent DNA helicase activity
JCQ04_RS05855	COG1733	regulation of RNA biosynthetic process
JCQ04_RS05860	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JCQ04_RS05865	COG0072	phenylalanine-tRNA ligase activity
JCQ04_RS05865	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JCQ04_RS05875	COG1126	abc transporter atp-binding protein
JCQ04_RS05880	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JCQ04_RS05885	COG0765	amino acid transport
JCQ04_RS05890	COG0765	amino acid transport
JCQ04_RS05895	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JCQ04_RS05900	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JCQ04_RS05910	COG0517	IMP dehydrogenase activity
JCQ04_RS05915	COG0668	transmembrane transport
JCQ04_RS05920	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JCQ04_RS05925	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JCQ04_RS05930	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JCQ04_RS05960	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JCQ04_RS05970	COG1234	tRNA 3'-trailer cleavage
JCQ04_RS05975	COG0300	oxidoreductase activity
JCQ04_RS05980	COG5416	Lipopolysaccharide assembly protein A domain
JCQ04_RS05985	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JCQ04_RS05985	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JCQ04_RS05990	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JCQ04_RS06000	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JCQ04_RS06020	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCQ04_RS06020	COG1388	LysM domain
JCQ04_RS06025	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JCQ04_RS06030	COG0735	belongs to the Fur family
JCQ04_RS06035	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCQ04_RS06055	COG3935	DnaD domain protein
JCQ04_RS06060	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JCQ04_RS06070	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JCQ04_RS06075	COG3331	DNA recombination
JCQ04_RS06080	COG4474	Belongs to the UPF0398 family
JCQ04_RS06085	COG3599	regulation of cell shape
JCQ04_RS06095	COG0116	Belongs to the methyltransferase superfamily
JCQ04_RS06100	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JCQ04_RS06105	COG1418	mRNA catabolic process
JCQ04_RS06110	COG0156	8-amino-7-oxononanoate synthase activity
JCQ04_RS06115	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JCQ04_RS06120	COG0531	amino acid
JCQ04_RS06135	COG0513	Belongs to the DEAD box helicase family
JCQ04_RS06140	COG2153	protein acetylation
JCQ04_RS06145	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JCQ04_RS06150	COG4684	Psort location CytoplasmicMembrane, score
JCQ04_RS06160	COG0328	RNA-DNA hybrid ribonuclease activity
JCQ04_RS06170	COG1278	Cold shock
JCQ04_RS06175	COG2759	Belongs to the formate--tetrahydrofolate ligase family
JCQ04_RS06190	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JCQ04_RS06195	COG0564	pseudouridine synthase activity
JCQ04_RS06205	COG2233	PERMEase
JCQ04_RS06210	COG0540	Belongs to the ATCase OTCase family
JCQ04_RS06215	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JCQ04_RS06220	COG0505	Belongs to the CarA family
JCQ04_RS06225	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JCQ04_RS06230	COG0543	2 iron, 2 sulfur cluster binding
JCQ04_RS06240	COG0284	orotidine-5'-phosphate decarboxylase activity
JCQ04_RS06270	COG1293	RNA-binding protein homologous to eukaryotic snRNP
JCQ04_RS06285	COG4120	Belongs to the binding-protein-dependent transport system permease family
JCQ04_RS06295	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JCQ04_RS06330	COG0039	L-malate dehydrogenase activity
JCQ04_RS06350	COG3037	sugar-specific permease SgaT UlaA
JCQ04_RS06360	COG3711	transcriptional antiterminator
JCQ04_RS06370	COG0673	inositol 2-dehydrogenase activity
JCQ04_RS06420	COG0745	RESPONSE REGULATOR receiver
JCQ04_RS06425	COG5002	protein histidine kinase activity
JCQ04_RS06430	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
JCQ04_RS06455	COG0351	phosphomethylpyrimidine kinase
JCQ04_RS06465	COG4475	Protein of unknown function (DUF436)
JCQ04_RS06470	COG0366	Alpha amylase catalytic
JCQ04_RS06485	COG1307	EDD domain protein, DegV family
JCQ04_RS06490	COG2244	polysaccharide biosynthetic process
JCQ04_RS06540	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JCQ04_RS06545	COG0194	GDP metabolic process
JCQ04_RS06570	COG0765	amino acid transport
JCQ04_RS06575	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JCQ04_RS06585	COG0167	dihydroorotate dehydrogenase activity
JCQ04_RS06600	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JCQ04_RS06610	COG3833	ABC-type maltose transport systems, permease component
JCQ04_RS06615	COG1175	transmembrane transport
JCQ04_RS06620	COG2182	Extracellular solute-binding protein
JCQ04_RS06625	COG0366	Alpha amylase catalytic
JCQ04_RS06630	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCQ04_RS06640	COG1764	response to oxidative stress
JCQ04_RS06645	COG1846	Transcriptional regulator
JCQ04_RS06650	COG0628	permease
JCQ04_RS06665	COG1312	Catalyzes the dehydration of D-mannonate
JCQ04_RS06670	COG0246	Mannitol dehydrogenase
JCQ04_RS06680	COG0450	alkyl hydroperoxide reductase
JCQ04_RS06725	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JCQ04_RS06740	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JCQ04_RS06770	COG2946	Replication initiation factor
JCQ04_RS06790	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JCQ04_RS06810	COG0004	ammonium transporteR
JCQ04_RS06815	COG2261	transglycosylase associated protein
JCQ04_RS06845	COG3655	Transcriptional regulator
JCQ04_RS06860	COG2261	transglycosylase associated protein
JCQ04_RS06880	COG1028	Short-chain dehydrogenase reductase Sdr
JCQ04_RS06895	COG1442	glycosyl transferase family 8
JCQ04_RS06900	COG1442	glycosyl transferase family 8
JCQ04_RS06905	COG0561	phosphatase activity
JCQ04_RS06930	COG1476	TRANSCRIPTIONal
JCQ04_RS06945	COG1278	Cold shock
JCQ04_RS06960	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCQ04_RS06965	COG1312	Catalyzes the dehydration of D-mannonate
JCQ04_RS06985	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS06990	COG3716	PTS system mannose fructose sorbose family IID component
JCQ04_RS07000	COG0371	Dehydrogenase
JCQ04_RS07015	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JCQ04_RS07020	COG0837	glucose binding
JCQ04_RS07020	COG1737	Transcriptional regulator
JCQ04_RS07030	COG2272	Belongs to the type-B carboxylesterase lipase family
JCQ04_RS07035	COG1073	alpha beta
JCQ04_RS07070	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JCQ04_RS07090	COG3732	PTS system glucitol sorbitol-specific
JCQ04_RS07095	COG3730	PTS system glucitol sorbitol-specific
JCQ04_RS07105	COG3711	transcriptional antiterminator
JCQ04_RS07105	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCQ04_RS07130	COG3328	transposase activity
JCQ04_RS07140	COG4974	Belongs to the 'phage' integrase family
JCQ04_RS07145	COG0582	viral genome integration into host DNA
JCQ04_RS07165	COG3250	beta-galactosidase activity
JCQ04_RS07180	COG2211	Major facilitator Superfamily
JCQ04_RS07190	COG1904	glucuronate isomerase
JCQ04_RS07195	COG1312	Catalyzes the dehydration of D-mannonate
JCQ04_RS07200	COG0246	Mannitol dehydrogenase
JCQ04_RS07205	COG2188	Transcriptional regulator
JCQ04_RS07260	COG0433	COG0433 Predicted ATPase
JCQ04_RS07305	COG2946	Replication initiation factor
JCQ04_RS07365	COG0481	GTPase activity
JCQ04_RS07385	COG0542	response to heat
JCQ04_RS07400	COG1597	lipid kinase activity
JCQ04_RS07405	COG2195	Cleaves the N-terminal amino acid of tripeptides
JCQ04_RS07410	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JCQ04_RS07415	COG2384	SAM-dependent methyltransferase
JCQ04_RS07425	COG1484	DNA-dependent DNA replication
JCQ04_RS07435	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JCQ04_RS07445	COG0237	dephospho-CoA kinase activity
JCQ04_RS07450	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JCQ04_RS07455	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JCQ04_RS07455	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JCQ04_RS07470	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JCQ04_RS07475	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JCQ04_RS07480	COG3091	SprT-like family
JCQ04_RS07485	COG2183	response to ionizing radiation
JCQ04_RS07495	COG1054	Belongs to the UPF0176 family
JCQ04_RS07510	COG0546	phosphoglycolate phosphatase activity
JCQ04_RS07515	COG0588	phosphoglycerate mutase activity
JCQ04_RS07560	COG4753	response regulator
JCQ04_RS07560	COG2207	Transcriptional regulator
JCQ04_RS07570	COG2972	Histidine kinase
JCQ04_RS07575	COG0077	Prephenate dehydratase
JCQ04_RS07580	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JCQ04_RS07585	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JCQ04_RS07590	COG0287	Prephenate dehydrogenase
JCQ04_RS07595	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JCQ04_RS07605	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JCQ04_RS07610	COG3250	beta-galactosidase activity
JCQ04_RS07625	COG1609	Transcriptional regulator
JCQ04_RS07635	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JCQ04_RS07645	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JCQ04_RS07650	COG1597	lipid kinase activity
JCQ04_RS07655	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JCQ04_RS07660	COG0154	amidase activity
JCQ04_RS07665	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JCQ04_RS07670	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JCQ04_RS07675	COG0210	DNA helicase
JCQ04_RS07685	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JCQ04_RS07685	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JCQ04_RS07685	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCQ04_RS07690	COG1105	Belongs to the carbohydrate kinase PfkB family
JCQ04_RS07695	COG1349	DNA-binding transcription factor activity
JCQ04_RS07715	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JCQ04_RS07720	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JCQ04_RS07725	COG0544	peptidyl-prolyl cis-trans isomerase activity
JCQ04_RS07735	COG1714	RDD family
JCQ04_RS07750	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JCQ04_RS07760	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JCQ04_RS07830	COG1481	regulation of sporulation
JCQ04_RS07835	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JCQ04_RS07840	COG1660	Displays ATPase and GTPase activities
JCQ04_RS07855	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JCQ04_RS07860	COG0556	nucleotide-excision repair
JCQ04_RS07865	COG0765	amino acid transport
JCQ04_RS07870	COG1126	abc transporter atp-binding protein
JCQ04_RS07875	COG0484	heat shock protein binding
JCQ04_RS07880	COG0443	Heat shock 70 kDa protein
JCQ04_RS07885	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JCQ04_RS07890	COG1420	regulation of RNA biosynthetic process
JCQ04_RS07895	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JCQ04_RS07940	COG0693	protein deglycase activity
JCQ04_RS07950	COG1619	proteins homologs of microcin C7 resistance protein MccF
JCQ04_RS07960	COG5646	InterPro IPR014922
JCQ04_RS07970	COG4975	Glucose uptake
JCQ04_RS07985	COG0196	riboflavin kinase activity
JCQ04_RS07990	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JCQ04_RS07995	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
JCQ04_RS08000	COG1175	transmembrane transport
JCQ04_RS08005	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JCQ04_RS08020	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JCQ04_RS08025	COG0195	Participates in both transcription termination and antitermination
JCQ04_RS08030	COG0779	Required for maturation of 30S ribosomal subunits
JCQ04_RS08035	COG2176	DNA-directed DNA polymerase activity
JCQ04_RS08040	COG0442	prolyl-tRNA aminoacylation
JCQ04_RS08045	COG0750	zinc metalloprotease
JCQ04_RS08050	COG4589	Belongs to the CDS family
JCQ04_RS08055	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JCQ04_RS08065	COG0233	cytoplasmic translational termination
JCQ04_RS08070	COG0528	UMP kinase activity
JCQ04_RS08075	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JCQ04_RS08080	COG0052	Belongs to the universal ribosomal protein uS2 family
JCQ04_RS08085	COG1438	arginine binding
JCQ04_RS08095	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCQ04_RS08100	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCQ04_RS08105	COG0018	arginyl-trna synthetase
JCQ04_RS08120	COG2235	arginine
JCQ04_RS08125	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JCQ04_RS08135	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JCQ04_RS08140	COG0456	acetyltransferase
JCQ04_RS08150	COG1214	PFAM Peptidase M22, glycoprotease
JCQ04_RS08160	COG1609	Transcriptional regulator
JCQ04_RS08165	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
JCQ04_RS08170	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JCQ04_RS08185	COG3189	MarR family transcriptional regulator
JCQ04_RS08190	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JCQ04_RS08195	COG1940	carbohydrate kinase activity
JCQ04_RS08210	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JCQ04_RS08215	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JCQ04_RS08220	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JCQ04_RS08225	COG1120	ATPase activity
JCQ04_RS08240	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JCQ04_RS08245	COG4876	unkown
JCQ04_RS08250	COG0367	asparagine synthase
JCQ04_RS08255	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JCQ04_RS08265	COG1309	transcriptional regulator
JCQ04_RS08285	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JCQ04_RS08300	COG0584	glycerophosphoryl diester phosphodiesterase
JCQ04_RS08330	COG0166	Belongs to the GPI family
JCQ04_RS08335	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JCQ04_RS08340	COG2081	HI0933 family
JCQ04_RS08345	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JCQ04_RS08350	COG0710	3-dehydroquinate dehydratase activity
JCQ04_RS08355	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JCQ04_RS08360	COG1368	sulfuric ester hydrolase activity
JCQ04_RS08375	COG5002	protein histidine kinase activity
JCQ04_RS08375	COG3850	Histidine kinase
JCQ04_RS08380	COG0745	RESPONSE REGULATOR receiver
JCQ04_RS08405	COG3328	transposase activity
JCQ04_RS08420	COG3328	transposase activity
JCQ04_RS08435	COG1956	GAF domain-containing protein
JCQ04_RS08440	COG3527	Alpha-acetolactate decarboxylase
JCQ04_RS08445	COG0028	Belongs to the TPP enzyme family
JCQ04_RS08455	COG3328	transposase activity
JCQ04_RS08465	COG0395	ABC-type sugar transport system, permease component
JCQ04_RS08475	COG0583	DNA-binding transcription factor activity
JCQ04_RS08480	COG0789	Transcriptional regulator
JCQ04_RS08485	COG2814	Major facilitator Superfamily
JCQ04_RS08540	COG4974	Belongs to the 'phage' integrase family
JCQ04_RS08565	COG4372	Transposase
JCQ04_RS08595	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCQ04_RS08595	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS08600	COG3716	PTS system mannose fructose sorbose family IID component
JCQ04_RS08605	COG3715	PTS system
JCQ04_RS08610	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCQ04_RS08610	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCQ04_RS08615	COG1940	carbohydrate kinase activity
JCQ04_RS08620	COG2190	(PTS) system
JCQ04_RS08635	COG1609	Transcriptional regulator
JCQ04_RS08660	COG3385	transposase activity
JCQ04_RS08680	COG0791	NLP P60 protein
JCQ04_RS08680	COG0741	lytic transglycosylase activity
JCQ04_RS08710	COG1196	nuclear chromosome segregation
JCQ04_RS08740	COG2946	Replication initiation factor
JCQ04_RS08755	COG1674	ftsk spoiiie
JCQ04_RS08785	COG0335	large ribosomal subunit rRNA binding
JCQ04_RS08790	COG0336	Belongs to the RNA methyltransferase TrmD family
JCQ04_RS08795	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JCQ04_RS08805	COG1837	Belongs to the UPF0109 family
JCQ04_RS08810	COG0228	four-way junction DNA binding
JCQ04_RS08815	COG0431	NADPH-dependent FMN reductase
JCQ04_RS08820	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JCQ04_RS08825	COG0519	Catalyzes the synthesis of GMP from XMP
JCQ04_RS08830	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JCQ04_RS08835	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
JCQ04_RS08845	COG0745	RESPONSE REGULATOR receiver
JCQ04_RS08850	COG5002	protein histidine kinase activity
JCQ04_RS08855	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JCQ04_RS08865	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JCQ04_RS08890	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JCQ04_RS08910	COG3328	transposase activity
JCQ04_RS08950	COG0714	Associated with various cellular activities
JCQ04_RS08970	COG2217	Heavy metal translocating P-type atpase
JCQ04_RS08975	COG2217	Heavy metal translocating P-type atpase
JCQ04_RS08980	COG2608	mercury ion transmembrane transporter activity
JCQ04_RS08985	COG3682	Transcriptional regulator
JCQ04_RS08995	COG0531	amino acid
JCQ04_RS09000	COG2217	Heavy metal translocating P-type atpase
JCQ04_RS09020	COG0017	Asparaginyl-tRNA synthetase
JCQ04_RS09025	COG0436	Aminotransferase
JCQ04_RS09035	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JCQ04_RS09035	COG1199	ATP-dependent helicase activity
JCQ04_RS09040	COG1278	Cold shock
JCQ04_RS09060	COG1686	Belongs to the peptidase S11 family
JCQ04_RS09070	COG0038	chloride channel
JCQ04_RS09085	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JCQ04_RS09090	COG1254	Belongs to the acylphosphatase family
JCQ04_RS09095	COG0706	membrane insertase activity
JCQ04_RS09100	COG3684	Belongs to the aldolase LacD family
JCQ04_RS09105	COG4372	Transposase
JCQ04_RS09165	COG1216	Glycosyl transferase, family 2
JCQ04_RS09170	COG0438	transferase activity, transferring glycosyl groups
JCQ04_RS09190	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JCQ04_RS09195	COG4464	protein tyrosine phosphatase activity
JCQ04_RS09200	COG0489	protein tyrosine kinase activity
JCQ04_RS09205	COG3944	biosynthesis protein
JCQ04_RS09210	COG1316	TRANSCRIPTIONal
JCQ04_RS09220	COG0751	glycine-tRNA ligase activity
JCQ04_RS09225	COG0752	glycyl-tRNA synthetase alpha subunit
JCQ04_RS09230	COG1381	Involved in DNA repair and RecF pathway recombination
JCQ04_RS09235	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JCQ04_RS09240	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JCQ04_RS09245	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JCQ04_RS09255	COG1702	phosphate starvation-inducible protein PhoH
JCQ04_RS09260	COG1114	Component of the transport system for branched-chain amino acids
JCQ04_RS09265	COG1610	YqeY-like protein
JCQ04_RS09270	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JCQ04_RS09275	COG0735	belongs to the Fur family
JCQ04_RS09280	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
JCQ04_RS09285	COG0640	Transcriptional regulator
JCQ04_RS09290	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JCQ04_RS09295	COG0492	ferredoxin-NADP+ reductase activity
JCQ04_RS09300	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS09305	COG1486	melibiose metabolic process
JCQ04_RS09310	COG1737	Transcriptional regulator
JCQ04_RS09315	COG1263	PTS System
JCQ04_RS09315	COG2190	(PTS) system
JCQ04_RS09315	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS09325	COG1132	(ABC) transporter
JCQ04_RS09330	COG1132	(ABC) transporter
JCQ04_RS09335	COG3763	UPF0154 protein
JCQ04_RS09340	COG1914	H( )-stimulated, divalent metal cation uptake system
JCQ04_RS09350	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
JCQ04_RS09360	COG3328	transposase activity
JCQ04_RS09395	COG1609	Transcriptional regulator
JCQ04_RS09405	COG4980	gas vesicle protein
JCQ04_RS09415	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JCQ04_RS09420	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JCQ04_RS09425	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JCQ04_RS09430	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
JCQ04_RS09435	COG1950	PFAM Membrane protein of
JCQ04_RS09460	COG0704	Plays a role in the regulation of phosphate uptake
JCQ04_RS09465	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JCQ04_RS09470	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JCQ04_RS09475	COG0581	inorganic phosphate transmembrane transporter activity
JCQ04_RS09480	COG0573	inorganic phosphate transmembrane transporter activity
JCQ04_RS09485	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JCQ04_RS09490	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JCQ04_RS09495	COG2177	Part of the ABC transporter FtsEX involved in
JCQ04_RS09500	COG2884	Cell division ATP-binding protein ftsE
JCQ04_RS09510	COG0653	protein targeting
JCQ04_RS09525	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JCQ04_RS09530	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS09540	COG1739	Uncharacterized protein family UPF0029
JCQ04_RS09545	COG2188	Transcriptional regulator
JCQ04_RS09570	COG1940	carbohydrate kinase activity
JCQ04_RS09590	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JCQ04_RS09605	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JCQ04_RS09610	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JCQ04_RS09615	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JCQ04_RS09620	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JCQ04_RS09625	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JCQ04_RS09630	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JCQ04_RS09635	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JCQ04_RS09640	COG0356	it plays a direct role in the translocation of protons across the membrane
JCQ04_RS09650	COG1647	Serine aminopeptidase, S33
JCQ04_RS09655	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JCQ04_RS09660	COG2388	GCN5-related N-acetyl-transferase
JCQ04_RS09670	COG1957	nucleoside hydrolase
JCQ04_RS09680	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JCQ04_RS09690	COG0149	triose-phosphate isomerase activity
JCQ04_RS09695	COG0126	phosphoglycerate kinase activity
JCQ04_RS09705	COG2390	Transcriptional regulator
JCQ04_RS09710	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JCQ04_RS09730	COG1595	DNA-templated transcription, initiation
JCQ04_RS09745	COG0095	Lipoate-protein ligase
JCQ04_RS09750	COG1078	dGTPase activity
JCQ04_RS09755	COG0561	phosphatase activity
JCQ04_RS09760	COG0494	nUDIX hydrolase
JCQ04_RS09765	COG0346	lactoylglutathione lyase activity
JCQ04_RS09775	COG2423	ornithine cyclodeaminase activity
JCQ04_RS09780	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JCQ04_RS09785	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JCQ04_RS09790	COG1394	ATPase activity, coupled to movement of substances
JCQ04_RS09795	COG1156	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type beta chain is a regulatory subunit
JCQ04_RS09800	COG1155	Produces ATP from ADP in the presence of a proton gradient across the membrane. The V-type alpha chain is a catalytic subunit
JCQ04_RS09805	COG1436	Produces ATP from ADP in the presence of a proton gradient across the membrane
JCQ04_RS09810	COG1527	subunit (C
JCQ04_RS09815	COG1390	Produces ATP from ADP in the presence of a proton gradient across the membrane
JCQ04_RS09820	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JCQ04_RS09825	COG1269	ATP hydrolysis coupled proton transport
JCQ04_RS09835	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JCQ04_RS09840	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
JCQ04_RS09850	COG4152	abc transporter atp-binding protein
JCQ04_RS09855	COG0322	excinuclease ABC activity
JCQ04_RS09865	COG3118	belongs to the thioredoxin family
JCQ04_RS09870	COG1193	negative regulation of DNA recombination
JCQ04_RS09885	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JCQ04_RS09900	COG1136	(ABC) transporter
JCQ04_RS09910	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCQ04_RS09940	COG1304	FMN binding
JCQ04_RS09950	COG0281	malic enzyme
JCQ04_RS09990	COG4695	Portal protein
JCQ04_RS10070	COG4974	Belongs to the 'phage' integrase family
JCQ04_RS10075	COG3906	Belongs to the UPF0473 family
JCQ04_RS10080	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JCQ04_RS10085	COG4472	Bacterial protein of unknown function (DUF965)
JCQ04_RS10115	COG4555	ABC transporter
JCQ04_RS10125	COG3689	TIGRFAM TIGR03943 family protein
JCQ04_RS10130	COG0701	Predicted permease
JCQ04_RS10135	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JCQ04_RS10140	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
JCQ04_RS10145	COG0488	(ABC) transporter
JCQ04_RS10150	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
JCQ04_RS10165	COG0395	ABC-type sugar transport system, permease component
JCQ04_RS10180	COG2207	Transcriptional regulator
JCQ04_RS10180	COG0662	Cupin 2, conserved barrel domain protein
JCQ04_RS10185	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCQ04_RS10200	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JCQ04_RS10205	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JCQ04_RS10210	COG0584	glycerophosphoryl diester phosphodiesterase
JCQ04_RS10220	COG0740	serine-type endopeptidase activity
JCQ04_RS10225	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JCQ04_RS10235	COG1132	(ABC) transporter
JCQ04_RS10245	COG5503	Protein of unknown function (DUF1447)
JCQ04_RS10260	COG1278	Cold shock
JCQ04_RS10350	COG0739	heme binding
JCQ04_RS10350	COG0741	lytic transglycosylase activity
JCQ04_RS10350	COG1196	nuclear chromosome segregation
JCQ04_RS10495	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JCQ04_RS10505	COG3723	Recombinational DNA repair protein, rece pathway
JCQ04_RS10510	COG5377	YqaJ viral recombinase family
JCQ04_RS10560	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JCQ04_RS10565	COG2003	Belongs to the UPF0758 family
JCQ04_RS10570	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCQ04_RS10575	COG0285	dihydrofolate synthase activity
JCQ04_RS10580	COG0525	valine-tRNA ligase activity
JCQ04_RS10585	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
JCQ04_RS10590	COG0301	tRNA thio-modification
JCQ04_RS10595	COG1104	cysteine desulfurase activity
JCQ04_RS10605	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
JCQ04_RS10615	COG0561	phosphatase activity
JCQ04_RS10620	COG1801	Protein of unknown function DUF72
JCQ04_RS10640	COG3579	cysteine-type endopeptidase activity
JCQ04_RS10690	COG4372	Transposase
JCQ04_RS10720	COG1098	S1 RNA binding domain
JCQ04_RS10725	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JCQ04_RS10740	COG0492	ferredoxin-NADP+ reductase activity
JCQ04_RS10745	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JCQ04_RS10760	COG4470	Protein conserved in bacteria
JCQ04_RS10765	COG0737	Belongs to the 5'-nucleotidase family
JCQ04_RS10780	COG0590	tRNA wobble adenosine to inosine editing
JCQ04_RS10785	COG2508	Transcriptional regulator
JCQ04_RS10795	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
JCQ04_RS10795	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JCQ04_RS10810	COG2738	Putative neutral zinc metallopeptidase
JCQ04_RS10815	COG2824	Alkylphosphonate utilization operon protein PhnA
JCQ04_RS10820	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JCQ04_RS10825	COG4109	DRTGG domain
JCQ04_RS10830	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JCQ04_RS10850	COG0577	efflux transmembrane transporter activity
JCQ04_RS10855	COG1136	(ABC) transporter
JCQ04_RS10865	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JCQ04_RS10870	COG1288	antiporter activity
JCQ04_RS10875	COG4821	SIS domain
JCQ04_RS10890	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JCQ04_RS10895	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JCQ04_RS10900	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JCQ04_RS10905	COG3716	PTS system mannose fructose sorbose family IID component
JCQ04_RS10910	COG3715	PTS system
JCQ04_RS10935	COG1132	(ABC) transporter
JCQ04_RS10940	COG1132	(ABC) transporter
JCQ04_RS10950	COG1803	Methylglyoxal synthase
JCQ04_RS10955	COG3842	ATPase activity
JCQ04_RS10965	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JCQ04_RS10970	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JCQ04_RS10975	COG0084	hydrolase, TatD family'
JCQ04_RS10980	COG0531	amino acid
JCQ04_RS10990	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JCQ04_RS10990	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JCQ04_RS11005	COG0675	Transposase, IS605 OrfB family
JCQ04_RS11010	COG4608	Belongs to the ABC transporter superfamily
JCQ04_RS11015	COG0444	Belongs to the ABC transporter superfamily
JCQ04_RS11020	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JCQ04_RS11025	COG0601	transmembrane transport
JCQ04_RS11035	COG4166	transmembrane transport
JCQ04_RS11050	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JCQ04_RS11055	COG1674	ftsk spoiiie
JCQ04_RS11055	COG1280	lysine exporter protein (LysE YggA)
JCQ04_RS11060	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS11065	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JCQ04_RS11070	COG1126	abc transporter atp-binding protein
JCQ04_RS11075	COG0765	amino acid transport
JCQ04_RS11120	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JCQ04_RS11130	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JCQ04_RS11135	COG0009	L-threonylcarbamoyladenylate synthase
JCQ04_RS11145	COG2890	protein-(glutamine-N5) methyltransferase activity
JCQ04_RS11150	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JCQ04_RS11155	COG1435	thymidine kinase activity
JCQ04_RS11165	COG2226	methyltransferase
JCQ04_RS11170	COG0681	Belongs to the peptidase S26 family
JCQ04_RS11190	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JCQ04_RS11195	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JCQ04_RS11200	COG3442	glutamine amidotransferase
JCQ04_RS11205	COG0246	Mannitol dehydrogenase
JCQ04_RS11210	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCQ04_RS11215	COG2213	PTS system mannitol-specific
JCQ04_RS11220	COG1131	(ABC) transporter
JCQ04_RS11230	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCQ04_RS11235	COG3711	transcriptional antiterminator
JCQ04_RS11240	COG2213	PTS system mannitol-specific
JCQ04_RS11245	COG1482	cell wall glycoprotein biosynthetic process
JCQ04_RS11260	COG1132	(ABC) transporter
JCQ04_RS11280	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JCQ04_RS11290	COG0628	permease
JCQ04_RS11300	COG2706	6-phosphogluconolactonase activity
JCQ04_RS11315	COG1368	sulfuric ester hydrolase activity
JCQ04_RS11325	COG2160	L-arabinose isomerase activity
JCQ04_RS11330	COG0235	Class ii aldolase
JCQ04_RS11350	COG3940	Belongs to the glycosyl hydrolase 43 family
JCQ04_RS11355	COG3534	alpha-L-arabinofuranosidase
JCQ04_RS11365	COG0395	ABC-type sugar transport system, permease component
JCQ04_RS11370	COG1175	transmembrane transport
JCQ04_RS11390	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JCQ04_RS11395	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JCQ04_RS11405	COG0789	Transcriptional regulator
JCQ04_RS11410	COG1609	Transcriptional regulator
JCQ04_RS11440	COG0459	protein refolding
JCQ04_RS11445	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JCQ04_RS11455	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS11460	COG2910	NAD(P)H-binding
JCQ04_RS11465	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JCQ04_RS11480	COG5002	protein histidine kinase activity
JCQ04_RS11485	COG0745	RESPONSE REGULATOR receiver
JCQ04_RS11490	COG1307	EDD domain protein, DegV family
JCQ04_RS11530	COG3448	diguanylate cyclase activity
JCQ04_RS11530	COG4175	Glycine betaine
JCQ04_RS11555	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JCQ04_RS11560	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JCQ04_RS11570	COG0628	permease
JCQ04_RS11575	COG1285	pathogenesis
JCQ04_RS11580	COG0363	glucosamine-6-phosphate deaminase activity
JCQ04_RS11585	COG0488	(ABC) transporter
JCQ04_RS11600	COG2814	Major facilitator Superfamily
JCQ04_RS11610	COG0222	ribosome binding
JCQ04_RS11615	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JCQ04_RS11620	COG0081	regulation of translation
JCQ04_RS11625	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JCQ04_RS11630	COG1760	l-serine dehydratase
JCQ04_RS11635	COG1760	l-serine dehydratase
JCQ04_RS11640	COG1304	FMN binding
JCQ04_RS11645	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JCQ04_RS11650	COG0250	Participates in transcription elongation, termination and antitermination
JCQ04_RS11655	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JCQ04_RS11660	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JCQ04_RS11675	COG1597	lipid kinase activity
JCQ04_RS11690	COG1131	(ABC) transporter
JCQ04_RS11695	COG4585	Histidine kinase
JCQ04_RS11700	COG2197	response regulator
JCQ04_RS11710	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JCQ04_RS11720	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JCQ04_RS11725	COG2226	methyltransferase
JCQ04_RS11730	COG3142	Participates in the control of copper homeostasis
JCQ04_RS11735	COG2239	Acts as a magnesium transporter
JCQ04_RS11740	COG0564	pseudouridine synthase activity
JCQ04_RS11745	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JCQ04_RS11750	COG2357	RelA SpoT domain protein
JCQ04_RS11755	COG4116	CYTH
JCQ04_RS11780	COG4862	establishment of competence for transformation
JCQ04_RS11785	COG1393	Belongs to the ArsC family
JCQ04_RS11800	COG0419	ATPase involved in DNA repair
JCQ04_RS11805	COG0420	3'-5' exonuclease activity
JCQ04_RS11810	COG0204	Acyl-transferase
JCQ04_RS11815	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JCQ04_RS11820	COG2827	Endonuclease containing a URI domain
JCQ04_RS11825	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JCQ04_RS11825	COG2755	lipolytic protein G-D-S-L family
JCQ04_RS11830	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JCQ04_RS11835	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JCQ04_RS11840	COG0124	histidyl-tRNA synthetase
JCQ04_RS11845	COG0667	Aldo Keto reductase
JCQ04_RS11850	COG2124	cytochrome p450
JCQ04_RS11855	COG1490	D-aminoacyl-tRNA deacylase activity
JCQ04_RS11860	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JCQ04_RS11865	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JCQ04_RS11870	COG2264	protein methyltransferase activity
JCQ04_RS11880	COG2094	Belongs to the DNA glycosylase MPG family
JCQ04_RS11885	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JCQ04_RS11900	COG0589	response to stress
JCQ04_RS11910	COG0488	(ABC) transporter
JCQ04_RS11915	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JCQ04_RS11920	COG0827	DNA restriction-modification system
JCQ04_RS11945	COG4537	Required for transformation and DNA binding
JCQ04_RS11950	COG1459	type II secretion system
JCQ04_RS11955	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JCQ04_RS11960	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JCQ04_RS11965	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JCQ04_RS11975	COG4473	ABC transporter
JCQ04_RS11980	COG1131	(ABC) transporter
JCQ04_RS11985	COG0537	adenosine 5'-monophosphoramidase activity
JCQ04_RS11995	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JCQ04_RS12000	COG3481	metal-dependent phosphohydrolase, HD sub domain
JCQ04_RS12005	COG4717	serine-type aminopeptidase activity
JCQ04_RS12010	COG0420	3'-5' exonuclease activity
JCQ04_RS12015	COG0561	phosphatase activity
JCQ04_RS12040	COG2211	Major facilitator Superfamily
JCQ04_RS12045	COG3507	Belongs to the glycosyl hydrolase 43 family
JCQ04_RS12060	COG1073	alpha beta
JCQ04_RS12070	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
JCQ04_RS12075	COG1653	transport
JCQ04_RS12085	COG4209	transmembrane transport
JCQ04_RS12090	COG0395	ABC-type sugar transport system, permease component
JCQ04_RS12095	COG2207	Transcriptional regulator
JCQ04_RS12100	COG1609	Transcriptional regulator
JCQ04_RS12105	COG0246	Mannitol dehydrogenase
JCQ04_RS12110	COG2721	sulfolactate sulfo-lyase activity
JCQ04_RS12115	COG1904	glucuronate isomerase
JCQ04_RS12120	COG2755	lipolytic protein G-D-S-L family
JCQ04_RS12130	COG1132	(ABC) transporter
JCQ04_RS12135	COG3679	Belongs to the UPF0342 family
JCQ04_RS12140	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JCQ04_RS12145	COG0564	pseudouridine synthase activity
JCQ04_RS12150	COG1940	carbohydrate kinase activity
JCQ04_RS12155	COG0383	alpha-mannosidase activity
JCQ04_RS12175	COG2207	Transcriptional regulator
JCQ04_RS12175	COG4753	response regulator
JCQ04_RS12180	COG2972	Histidine kinase
JCQ04_RS12190	COG1653	transport
JCQ04_RS12195	COG0395	ABC-type sugar transport system, permease component
JCQ04_RS12200	COG1175	transmembrane transport
JCQ04_RS12205	COG1187	pseudouridine synthase activity
JCQ04_RS12210	COG2244	polysaccharide biosynthetic process
JCQ04_RS12220	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JCQ04_RS12225	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS12240	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCQ04_RS12240	COG3711	transcriptional antiterminator
JCQ04_RS12285	COG4978	Transcriptional regulator
JCQ04_RS12285	COG0789	Transcriptional regulator
JCQ04_RS12295	COG1132	(ABC) transporter
JCQ04_RS12305	COG0495	leucyl-tRNA aminoacylation
JCQ04_RS12310	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCQ04_RS12310	COG1388	LysM domain
JCQ04_RS12315	COG0671	phosphoesterase, PA-phosphatase related
JCQ04_RS12320	COG1242	4 iron, 4 sulfur cluster binding
JCQ04_RS12325	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JCQ04_RS12375	COG0582	viral genome integration into host DNA
JCQ04_RS12380	COG3328	transposase activity
JCQ04_RS12395	COG1132	(ABC) transporter
JCQ04_RS12400	COG1132	(ABC) transporter
JCQ04_RS12415	COG0477	Major facilitator Superfamily
JCQ04_RS12420	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JCQ04_RS12440	COG0456	acetyltransferase
JCQ04_RS12450	COG2226	methyltransferase
JCQ04_RS12705	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JCQ04_RS12710	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JCQ04_RS12715	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JCQ04_RS12725	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JCQ04_RS12730	COG0037	tRNA processing
JCQ04_RS12735	COG1098	S1 RNA binding domain
JCQ04_RS12745	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JCQ04_RS12750	COG2244	polysaccharide biosynthetic process
JCQ04_RS12755	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JCQ04_RS12760	COG0193	aminoacyl-tRNA hydrolase activity
JCQ04_RS12765	COG0039	L-malate dehydrogenase activity
JCQ04_RS12775	COG0217	transcriptional regulatory protein
JCQ04_RS12800	COG1792	Involved in formation and maintenance of cell shape
JCQ04_RS12810	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JCQ04_RS12815	COG1162	GTPase activity
JCQ04_RS12820	COG2815	serine threonine protein kinase
JCQ04_RS12820	COG0515	serine threonine protein kinase
JCQ04_RS12825	COG0631	protein serine/threonine phosphatase activity
JCQ04_RS12830	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JCQ04_RS12830	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JCQ04_RS12835	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JCQ04_RS12840	COG0242	peptide deformylase activity
JCQ04_RS12845	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JCQ04_RS12850	COG1758	RNA polymerase activity
JCQ04_RS12855	COG0194	GDP metabolic process
JCQ04_RS12865	COG1561	YicC-like family, N-terminal region
JCQ04_RS12875	COG1752	Esterase of the alpha-beta hydrolase superfamily
JCQ04_RS12890	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JCQ04_RS12895	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JCQ04_RS12900	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JCQ04_RS12905	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JCQ04_RS12910	COG1121	(ABC) transporter
JCQ04_RS12915	COG3443	Belongs to the bacterial solute-binding protein 9 family
JCQ04_RS12915	COG0803	Belongs to the bacterial solute-binding protein 9 family
JCQ04_RS12920	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JCQ04_RS12925	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JCQ04_RS12925	COG0392	lysyltransferase activity
JCQ04_RS12930	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JCQ04_RS12940	COG1418	mRNA catabolic process
JCQ04_RS12945	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JCQ04_RS12950	COG1058	Belongs to the CinA family
JCQ04_RS12950	COG1546	Belongs to the CinA family
JCQ04_RS12955	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JCQ04_RS12960	COG1426	Protein conserved in bacteria
JCQ04_RS12965	COG0612	Peptidase, M16
JCQ04_RS12970	COG0612	Peptidase, M16
JCQ04_RS12975	COG1970	mechanosensitive ion channel activity
JCQ04_RS12980	COG2153	protein acetylation
JCQ04_RS12990	COG4466	Protein conserved in bacteria
JCQ04_RS13000	COG3688	RNA-binding protein containing a PIN domain
JCQ04_RS13005	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JCQ04_RS13010	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
JCQ04_RS13015	COG0215	cysteine-tRNA ligase activity
JCQ04_RS13020	COG1045	serine acetyltransferase
JCQ04_RS13025	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JCQ04_RS13030	COG4956	integral membrane protein (PIN domain superfamily)
JCQ04_RS13040	COG0756	dUTP diphosphatase activity
JCQ04_RS13050	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JCQ04_RS13055	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JCQ04_RS13070	COG2814	Major facilitator Superfamily
JCQ04_RS13095	COG0778	Nitroreductase
JCQ04_RS13105	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCQ04_RS13105	COG1388	LysM domain
JCQ04_RS13110	COG4221	oxidoreductase activity
JCQ04_RS13120	COG0583	DNA-binding transcription factor activity
JCQ04_RS13125	COG3711	transcriptional antiterminator
JCQ04_RS13130	COG1263	PTS System
JCQ04_RS13130	COG2190	(PTS) system
JCQ04_RS13130	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS13135	COG0702	epimerase
JCQ04_RS13150	COG3708	Transcriptional regulator
JCQ04_RS13150	COG2207	Transcriptional regulator
JCQ04_RS13170	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
JCQ04_RS13180	COG0604	alcohol dehydrogenase
JCQ04_RS13185	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JCQ04_RS13190	COG0842	Transport permease protein
JCQ04_RS13195	COG1131	(ABC) transporter
JCQ04_RS13205	COG2205	protein histidine kinase activity
JCQ04_RS13210	COG0745	RESPONSE REGULATOR receiver
JCQ04_RS13250	COG2188	Transcriptional regulator
JCQ04_RS13255	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCQ04_RS13260	COG3716	PTS system mannose fructose sorbose family IID component
JCQ04_RS13265	COG3715	PTS system
JCQ04_RS13275	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JCQ04_RS13280	COG2222	sugar isomerase
JCQ04_RS13385	COG1674	ftsk spoiiie
JCQ04_RS13410	COG2946	Replication initiation factor
JCQ04_RS13450	COG0791	NLP P60 protein
JCQ04_RS13450	COG0741	lytic transglycosylase activity
JCQ04_RS13475	COG2814	Major facilitator Superfamily
JCQ04_RS13485	COG1705	Flagellar rod assembly protein muramidase FlgJ
JCQ04_RS13485	COG3942	CHAP domain
JCQ04_RS13490	COG0446	pyridine nucleotide-disulphide oxidoreductase
JCQ04_RS13505	COG2207	Transcriptional regulator
JCQ04_RS13505	COG3708	Transcriptional regulator
JCQ04_RS13540	COG0523	cobalamin synthesis protein
JCQ04_RS13560	COG3443	Belongs to the bacterial solute-binding protein 9 family
JCQ04_RS13560	COG0803	Belongs to the bacterial solute-binding protein 9 family
JCQ04_RS13575	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JCQ04_RS13585	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JCQ04_RS13590	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JCQ04_RS13595	COG1132	(ABC) transporter
JCQ04_RS13600	COG1132	(ABC) transporter
JCQ04_RS13610	COG1129	ABC transporter
JCQ04_RS13620	COG1309	transcriptional regulator
JCQ04_RS13655	COG4974	Belongs to the 'phage' integrase family
JCQ04_RS13660	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JCQ04_RS13665	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JCQ04_RS13670	COG0783	Belongs to the Dps family
JCQ04_RS13675	COG1070	Carbohydrate kinase
JCQ04_RS13680	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JCQ04_RS13685	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JCQ04_RS13690	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCQ04_RS13700	COG1554	hydrolase, family 65, central catalytic
JCQ04_RS13705	COG0673	inositol 2-dehydrogenase activity
JCQ04_RS13710	COG1082	Xylose isomerase domain protein TIM barrel
JCQ04_RS13715	COG1063	alcohol dehydrogenase
JCQ04_RS13720	COG0395	ABC-type sugar transport system, permease component
JCQ04_RS13725	COG1175	transmembrane transport
JCQ04_RS13730	COG1653	transport
JCQ04_RS13735	COG0366	Alpha amylase catalytic
JCQ04_RS13740	COG1609	Transcriptional regulator
JCQ04_RS13745	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JCQ04_RS13750	COG0085	RNA polymerase activity
JCQ04_RS13760	COG4120	Belongs to the binding-protein-dependent transport system permease family
JCQ04_RS13770	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
JCQ04_RS13770	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
JCQ04_RS13785	COG0142	geranyltranstransferase activity
JCQ04_RS13805	COG4939	FMN-binding domain protein
JCQ04_RS13820	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JCQ04_RS13825	COG0826	peptidase U32
JCQ04_RS13830	COG0826	peptidase U32
JCQ04_RS13835	COG0542	response to heat
JCQ04_RS13840	COG4463	regulation of RNA biosynthetic process
JCQ04_RS13915	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JCQ04_RS13920	COG0516	GMP reductase activity
JCQ04_RS13920	COG0517	IMP dehydrogenase activity
JCQ04_RS13930	COG0012	GTP binding
JCQ04_RS13935	COG4481	Protein conserved in bacteria
JCQ04_RS13940	COG1475	DNA binding
JCQ04_RS13945	COG1192	Involved in chromosome partitioning
JCQ04_RS13950	COG0357	Ribosomal RNA small subunit methyltransferase G
JCQ04_RS13955	COG0445	tRNA wobble uridine modification
JCQ04_RS13960	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JCQ04_RS13970	COG1847	R3H domain protein
JCQ04_RS13975	COG0706	membrane insertase activity
JCQ04_RS13980	COG0594	ribonuclease P activity
JCQ04_RS13985	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JCQ04_RS14040	COG1192	Involved in chromosome partitioning
JCQ04_RS14060	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JCQ04_RS14070	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JCQ04_RS14115	COG0629	single-stranded DNA binding
JCQ04_RS14215	COG3344	reverse transcriptase
JCQ04_RS14360	COG3344	reverse transcriptase
JCQ04_RS14375	COG2337	Toxic component of a toxin-antitoxin (TA) module
JCQ04_RS14460	COG0629	single-stranded DNA binding
JCQ04_RS14465	COG0629	single-stranded DNA binding
JCQ04_RS14525	COG3328	transposase activity
JCQ04_RS14540	COG3775	system Galactitol-specific IIC component
JCQ04_RS14555	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JCQ04_RS14565	COG4372	Transposase
JCQ04_RS14600	COG1940	carbohydrate kinase activity
JCQ04_RS14605	COG1263	PTS System
JCQ04_RS14605	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS14605	COG2190	(PTS) system
JCQ04_RS14610	COG1621	beta-fructofuranosidase activity
JCQ04_RS14615	COG1609	Transcriptional regulator
JCQ04_RS14640	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
JCQ04_RS14645	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS14645	COG1263	PTS System
JCQ04_RS14645	COG2190	(PTS) system
JCQ04_RS14650	COG1263	PTS System
JCQ04_RS14650	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS14650	COG2190	(PTS) system
JCQ04_RS14670	COG4974	Belongs to the 'phage' integrase family
JCQ04_RS14680	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JCQ04_RS14690	COG3684	Belongs to the aldolase LacD family
JCQ04_RS14695	COG2222	sugar isomerase
JCQ04_RS14700	COG2188	Transcriptional regulator
JCQ04_RS14715	COG3328	transposase activity
JCQ04_RS14730	COG3328	transposase activity
JCQ04_RS14745	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
JCQ04_RS14750	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JCQ04_RS14755	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JCQ04_RS14775	COG4372	Transposase
JCQ04_RS14855	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JCQ04_RS14870	COG3409	Peptidoglycan-binding domain 1 protein
JCQ04_RS14890	COG5002	protein histidine kinase activity
JCQ04_RS14905	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JCQ04_RS14920	COG3842	ATPase activity
JCQ04_RS14930	COG0395	ABC-type sugar transport system, permease component
JCQ04_RS14945	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JCQ04_RS14965	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JCQ04_RS14980	COG1136	(ABC) transporter
JCQ04_RS15000	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JCQ04_RS15035	COG0582	viral genome integration into host DNA
JCQ04_RS15060	COG2217	Heavy metal translocating P-type atpase
JCQ04_RS15080	COG2217	Heavy metal translocating P-type atpase
JCQ04_RS15085	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JCQ04_RS15095	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JCQ04_RS15105	COG3711	transcriptional antiterminator
JCQ04_RS15110	COG2723	6-phospho-beta-galactosidase activity
JCQ04_RS15115	COG2190	(PTS) system
JCQ04_RS15115	COG1263	PTS System
JCQ04_RS15115	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JCQ04_RS15120	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCQ04_RS15120	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCQ04_RS15165	COG1288	antiporter activity
JCQ04_RS15185	COG2188	Transcriptional regulator
JCQ04_RS15190	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JCQ04_RS15195	COG2222	sugar isomerase
JCQ04_RS15220	COG3711	transcriptional antiterminator
JCQ04_RS15225	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JCQ04_RS15230	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JCQ04_RS15230	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JCQ04_RS15235	COG2222	sugar isomerase
JCQ04_RS15240	COG3716	PTS system mannose fructose sorbose family IID component
JCQ04_RS15245	COG3715	PTS system
JCQ04_RS15355	COG4115	mRNA cleavage
JCQ04_RS15370	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JCQ04_RS15390	COG1192	Involved in chromosome partitioning