locus-tag class description JCP88_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix JCP88_RS00005 PF00308 Bacterial dnaA protein JCP88_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JCP88_RS00010 PF02767 DNA polymerase III beta subunit, central domain JCP88_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JCP88_RS00020 PF02463 RecF/RecN/SMC N terminal domain JCP88_RS00025 PF00204 DNA gyrase B JCP88_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus JCP88_RS00025 PF01751 Toprim domain JCP88_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A JCP88_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller JCP88_RS00035 PF01250 Ribosomal protein S6 JCP88_RS00040 PF00436 Single-strand binding protein family JCP88_RS00045 PF01084 Ribosomal protein S18 JCP88_RS00050 PF02272 DHHA1 domain JCP88_RS00050 PF01368 DHH family JCP88_RS00055 PF01281 Ribosomal protein L9, N-terminal domain JCP88_RS00055 PF03948 Ribosomal protein L9, C-terminal domain JCP88_RS00060 PF03796 DnaB-like helicase C terminal domain JCP88_RS00060 PF00772 DnaB-like helicase N terminal domain JCP88_RS00065 PF00709 Adenylosuccinate synthetase JCP88_RS00070 PF02645 Uncharacterised protein, DegV family COG1307 JCP88_RS00075 PF12848 ABC transporter JCP88_RS00075 PF00005 ABC transporter JCP88_RS00085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JCP88_RS00085 PF00205 Thiamine pyrophosphate enzyme, central domain JCP88_RS00085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JCP88_RS00090 PF02535 ZIP Zinc transporter JCP88_RS00100 PF06736 Protein of unknown function (DUF1211) JCP88_RS00110 PF04892 VanZ like family JCP88_RS00150 PF08220 DeoR-like helix-turn-helix domain JCP88_RS00150 PF00455 DeoR C terminal sensor domain JCP88_RS00155 PF00232 Glycosyl hydrolase family 1 JCP88_RS00160 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JCP88_RS00165 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS00165 PF02378 Phosphotransferase system, EIIC JCP88_RS00170 PF07745 Glycosyl hydrolase family 53 JCP88_RS00175 PF00872 Transposase, Mutator family JCP88_RS00180 PF02463 RecF/RecN/SMC N terminal domain JCP88_RS00185 PF13361 UvrD-like helicase C-terminal domain JCP88_RS00185 PF00580 UvrD/REP helicase N-terminal domain JCP88_RS00210 PF18106 Rolling Circle replication initiation protein N-terminal domain JCP88_RS00210 PF02486 Replication initiation factor JCP88_RS00255 PF00877 NlpC/P60 family JCP88_RS00270 PF00009 Elongation factor Tu GTP binding domain JCP88_RS00270 PF03764 Elongation factor G, domain IV JCP88_RS00270 PF14492 Elongation Factor G, domain II JCP88_RS00270 PF00679 Elongation factor G C-terminus JCP88_RS00300 PF00589 Phage integrase family JCP88_RS00300 PF14659 Phage integrase, N-terminal SAM-like domain JCP88_RS00305 PF00958 GMP synthase C terminal domain JCP88_RS00305 PF00117 Glutamine amidotransferase class-I JCP88_RS00305 PF02540 NAD synthase JCP88_RS00310 PF00485 Phosphoribulokinase / Uridine kinase family JCP88_RS00315 PF05175 Methyltransferase small domain JCP88_RS00320 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS00325 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JCP88_RS00325 PF00591 Glycosyl transferase family, a/b domain JCP88_RS00325 PF02885 Glycosyl transferase family, helical bundle domain JCP88_RS00330 PF01791 DeoC/LacD family aldolase JCP88_RS00335 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JCP88_RS00340 PF02608 ABC transporter substrate-binding protein PnrA-like JCP88_RS00345 PF00005 ABC transporter JCP88_RS00350 PF02653 Branched-chain amino acid transport system / permease component JCP88_RS00355 PF02653 Branched-chain amino acid transport system / permease component JCP88_RS00360 PF01676 Metalloenzyme superfamily JCP88_RS00365 PF01048 Phosphorylase superfamily JCP88_RS00370 PF01048 Phosphorylase superfamily JCP88_RS00375 PF00300 Histidine phosphatase superfamily (branch 1) JCP88_RS00380 PF00239 Resolvase, N terminal domain JCP88_RS00380 PF02796 Helix-turn-helix domain of resolvase JCP88_RS00385 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JCP88_RS00390 PF00164 Ribosomal protein S12/S23 JCP88_RS00395 PF00177 Ribosomal protein S7p/S5e JCP88_RS00400 PF00679 Elongation factor G C-terminus JCP88_RS00400 PF14492 Elongation Factor G, domain II JCP88_RS00400 PF03764 Elongation factor G, domain IV JCP88_RS00400 PF00009 Elongation factor Tu GTP binding domain JCP88_RS00400 PF03144 Elongation factor Tu domain 2 JCP88_RS00405 PF00009 Elongation factor Tu GTP binding domain JCP88_RS00405 PF03144 Elongation factor Tu domain 2 JCP88_RS00405 PF03143 Elongation factor Tu C-terminal domain JCP88_RS00410 PF00338 Ribosomal protein S10p/S20e JCP88_RS00415 PF00297 Ribosomal protein L3 JCP88_RS00420 PF00573 Ribosomal protein L4/L1 family JCP88_RS00425 PF00276 Ribosomal protein L23 JCP88_RS00430 PF03947 Ribosomal Proteins L2, C-terminal domain JCP88_RS00430 PF00181 Ribosomal Proteins L2, RNA binding domain JCP88_RS00435 PF00203 Ribosomal protein S19 JCP88_RS00440 PF00237 Ribosomal protein L22p/L17e JCP88_RS00445 PF00189 Ribosomal protein S3, C-terminal domain JCP88_RS00445 PF07650 KH domain JCP88_RS00450 PF00252 Ribosomal protein L16p/L10e JCP88_RS00455 PF00831 Ribosomal L29 protein JCP88_RS00460 PF00366 Ribosomal protein S17 JCP88_RS00465 PF00238 Ribosomal protein L14p/L23e JCP88_RS00470 PF00467 KOW motif JCP88_RS00470 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JCP88_RS00475 PF00673 ribosomal L5P family C-terminus JCP88_RS00475 PF00281 Ribosomal protein L5 JCP88_RS00480 PF00253 Ribosomal protein S14p/S29e JCP88_RS00485 PF00410 Ribosomal protein S8 JCP88_RS00490 PF00347 Ribosomal protein L6 JCP88_RS00495 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JCP88_RS00500 PF00333 Ribosomal protein S5, N-terminal domain JCP88_RS00500 PF03719 Ribosomal protein S5, C-terminal domain JCP88_RS00505 PF00327 Ribosomal protein L30p/L7e JCP88_RS00510 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JCP88_RS00515 PF00344 SecY translocase JCP88_RS00520 PF05191 Adenylate kinase, active site lid JCP88_RS00525 PF01176 Translation initiation factor 1A / IF-1 JCP88_RS00530 PF00444 Ribosomal protein L36 JCP88_RS00535 PF00416 Ribosomal protein S13/S18 JCP88_RS00540 PF00411 Ribosomal protein S11 JCP88_RS00545 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JCP88_RS00545 PF01000 RNA polymerase Rpb3/RpoA insert domain JCP88_RS00545 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JCP88_RS00550 PF01196 Ribosomal protein L17 JCP88_RS00555 PF00005 ABC transporter JCP88_RS00560 PF00005 ABC transporter JCP88_RS00565 PF02361 Cobalt transport protein JCP88_RS00570 PF01416 tRNA pseudouridine synthase JCP88_RS00580 PF00830 Ribosomal L28 family JCP88_RS00585 PF03780 Asp23 family, cell envelope-related function JCP88_RS00590 PF02734 DAK2 domain JCP88_RS00590 PF13684 Dihydroxyacetone kinase family JCP88_RS00595 PF00271 Helicase conserved C-terminal domain JCP88_RS00595 PF00270 DEAD/DEAH box helicase JCP88_RS00595 PF17191 RecG wedge domain JCP88_RS00600 PF02504 Fatty acid synthesis protein JCP88_RS00605 PF00550 Phosphopantetheine attachment site JCP88_RS00610 PF00005 ABC transporter JCP88_RS00610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JCP88_RS00615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JCP88_RS00615 PF00005 ABC transporter JCP88_RS00620 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS00625 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS00630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JCP88_RS00635 PF00035 Double-stranded RNA binding motif JCP88_RS00635 PF14622 Ribonuclease-III-like JCP88_RS00640 PF06470 SMC proteins Flexible Hinge Domain JCP88_RS00640 PF02463 RecF/RecN/SMC N terminal domain JCP88_RS00650 PF00448 SRP54-type protein, GTPase domain JCP88_RS00650 PF02881 SRP54-type protein, helical bundle domain JCP88_RS00655 PF18419 ATP-grasp-like domain JCP88_RS00655 PF02655 ATP-grasp domain JCP88_RS00655 PF04262 Glutamate-cysteine ligase JCP88_RS00665 PF01032 FecCD transport family JCP88_RS00670 PF01032 FecCD transport family JCP88_RS00675 PF00005 ABC transporter JCP88_RS00680 PF01497 Periplasmic binding protein JCP88_RS00705 PF06458 MucBP domain JCP88_RS00720 PF00872 Transposase, Mutator family JCP88_RS00735 PF00230 Major intrinsic protein JCP88_RS00740 PF03788 LrgA family JCP88_RS00745 PF04172 LrgB-like family JCP88_RS00755 PF04172 LrgB-like family JCP88_RS00780 PF02632 BioY family JCP88_RS00785 PF01479 S4 domain JCP88_RS00785 PF00163 Ribosomal protein S4/S9 N-terminal domain JCP88_RS00805 PF13277 YmdB-like protein JCP88_RS00815 PF01624 MutS domain I JCP88_RS00815 PF00488 MutS domain V JCP88_RS00815 PF05192 MutS domain III JCP88_RS00815 PF05190 MutS family domain IV JCP88_RS00815 PF05188 MutS domain II JCP88_RS00820 PF08676 MutL C terminal dimerisation domain JCP88_RS00820 PF01119 DNA mismatch repair protein, C-terminal domain JCP88_RS00825 PF02545 Maf-like protein JCP88_RS00830 PF00367 phosphotransferase system, EIIB JCP88_RS00830 PF02378 Phosphotransferase system, EIIC JCP88_RS00835 PF07702 UTRA domain JCP88_RS00835 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS00840 PF01641 SelR domain JCP88_RS00845 PF01330 RuvA N terminal domain JCP88_RS00845 PF07499 RuvA, C-terminal domain JCP88_RS00850 PF05491 RuvB C-terminal winged helix domain JCP88_RS00850 PF05496 Holliday junction DNA helicase RuvB P-loop domain JCP88_RS00850 PF17864 RuvB AAA lid domain JCP88_RS00860 PF01451 Low molecular weight phosphotyrosine protein phosphatase JCP88_RS00870 PF00872 Transposase, Mutator family JCP88_RS00875 PF05525 Branched-chain amino acid transport protein JCP88_RS00880 PF06736 Protein of unknown function (DUF1211) JCP88_RS00885 PF00324 Amino acid permease JCP88_RS00890 PF00005 ABC transporter JCP88_RS00895 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS00905 PF02146 Sir2 family JCP88_RS00910 PF12464 Maltose acetyltransferase JCP88_RS00910 PF14602 Hexapeptide repeat of succinyl-transferase JCP88_RS00915 PF08279 HTH domain JCP88_RS00915 PF02829 3H domain JCP88_RS00920 PF01327 Polypeptide deformylase JCP88_RS00925 PF00312 Ribosomal protein S15 JCP88_RS00930 PF00575 S1 RNA binding domain JCP88_RS00930 PF03725 3' exoribonuclease family, domain 2 JCP88_RS00930 PF01138 3' exoribonuclease family, domain 1 JCP88_RS00930 PF00013 KH domain JCP88_RS00930 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JCP88_RS00940 PF02705 K+ potassium transporter JCP88_RS00945 PF00571 CBS domain JCP88_RS00945 PF01595 Cyclin M transmembrane N-terminal domain JCP88_RS00945 PF03471 Transporter associated domain JCP88_RS00950 PF01554 MatE JCP88_RS00960 PF14693 Ribosomal protein TL5, C-terminal domain JCP88_RS00960 PF01386 Ribosomal L25p family JCP88_RS00965 PF00849 RNA pseudouridylate synthase JCP88_RS00965 PF01479 S4 domain JCP88_RS00970 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS00975 PF00485 Phosphoribulokinase / Uridine kinase family JCP88_RS01000 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JCP88_RS01005 PF03109 ABC1 family JCP88_RS01010 PF07478 D-ala D-ala ligase C-terminus JCP88_RS01010 PF01820 D-ala D-ala ligase N-terminus JCP88_RS01015 PF02875 Mur ligase family, glutamate ligase domain JCP88_RS01015 PF01225 Mur ligase family, catalytic domain JCP88_RS01015 PF08245 Mur ligase middle domain JCP88_RS01020 PF00271 Helicase conserved C-terminal domain JCP88_RS01020 PF00270 DEAD/DEAH box helicase JCP88_RS01025 PF01648 4'-phosphopantetheinyl transferase superfamily JCP88_RS01030 PF00842 Alanine racemase, C-terminal domain JCP88_RS01030 PF01168 Alanine racemase, N-terminal domain JCP88_RS01035 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system JCP88_RS01040 PF00253 Ribosomal protein S14p/S29e JCP88_RS01045 PF08240 Alcohol dehydrogenase GroES-like domain JCP88_RS01045 PF14765 Polyketide synthase dehydratase JCP88_RS01045 PF00550 Phosphopantetheine attachment site JCP88_RS01045 PF08659 KR domain JCP88_RS01045 PF02801 Beta-ketoacyl synthase, C-terminal domain JCP88_RS01045 PF00109 Beta-ketoacyl synthase, N-terminal domain JCP88_RS01045 PF16197 Ketoacyl-synthetase C-terminal extension JCP88_RS01045 PF00698 Acyl transferase domain JCP88_RS01050 PF01061 ABC-2 type transporter JCP88_RS01055 PF13520 Amino acid permease JCP88_RS01080 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS01085 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JCP88_RS01090 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS01095 PF00005 ABC transporter JCP88_RS01095 PF00571 CBS domain JCP88_RS01100 PF02547 Queuosine biosynthesis protein JCP88_RS01105 PF00690 Cation transporter/ATPase, N-terminus JCP88_RS01105 PF00689 Cation transporting ATPase, C-terminus JCP88_RS01115 PF01702 Queuine tRNA-ribosyltransferase JCP88_RS01120 PF02699 Preprotein translocase subunit JCP88_RS01125 PF00171 Aldehyde dehydrogenase family JCP88_RS01125 PF00465 Iron-containing alcohol dehydrogenase JCP88_RS01135 PF07470 Glycosyl Hydrolase Family 88 JCP88_RS01140 PF03480 Bacterial extracellular solute-binding protein, family 7 JCP88_RS01150 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component JCP88_RS01165 PF12833 Helix-turn-helix domain JCP88_RS01165 PF02311 AraC-like ligand binding domain JCP88_RS01170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JCP88_RS01170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JCP88_RS01175 PF06134 L-rhamnose isomerase (RhaA) JCP88_RS01180 PF00596 Class II Aldolase and Adducin N-terminal domain JCP88_RS01185 PF05336 L-rhamnose mutarotase JCP88_RS01190 PF00465 Iron-containing alcohol dehydrogenase JCP88_RS01195 PF01614 Bacterial transcriptional regulator JCP88_RS01195 PF09339 IclR helix-turn-helix domain JCP88_RS01200 PF01081 KDPG and KHG aldolase JCP88_RS01210 PF04962 KduI/IolB family JCP88_RS01220 PF01070 FMN-dependent dehydrogenase JCP88_RS01225 PF08544 GHMP kinases C terminal JCP88_RS01225 PF00288 GHMP kinases N terminal domain JCP88_RS01235 PF00288 GHMP kinases N terminal domain JCP88_RS01235 PF10509 Galactokinase galactose-binding signature JCP88_RS01235 PF08544 GHMP kinases C terminal JCP88_RS01240 PF01712 Deoxynucleoside kinase JCP88_RS01255 PF00872 Transposase, Mutator family JCP88_RS01260 PF00707 Translation initiation factor IF-3, C-terminal domain JCP88_RS01260 PF05198 Translation initiation factor IF-3, N-terminal domain JCP88_RS01265 PF01632 Ribosomal protein L35 JCP88_RS01270 PF00453 Ribosomal protein L20 JCP88_RS01280 PF05378 Hydantoinase/oxoprolinase N-terminal region JCP88_RS01280 PF01968 Hydantoinase/oxoprolinase JCP88_RS01300 PF03061 Thioesterase superfamily JCP88_RS01305 PF01256 Carbohydrate kinase JCP88_RS01310 PF01546 Peptidase family M20/M25/M40 JCP88_RS01315 PF00535 Glycosyl transferase family 2 JCP88_RS01325 PF05343 M42 glutamyl aminopeptidase JCP88_RS01330 PF00085 Thioredoxin JCP88_RS01335 PF00582 Universal stress protein family JCP88_RS01340 PF01588 Putative tRNA binding domain JCP88_RS01340 PF14794 Domain of unknown function (DUF4479) JCP88_RS01345 PF13683 Integrase core domain JCP88_RS01345 PF01610 Transposase JCP88_RS01350 PF13180 PDZ domain JCP88_RS01355 PF02590 Predicted SPOUT methyltransferase JCP88_RS01360 PF07308 Protein of unknown function (DUF1456) JCP88_RS01370 PF08546 Ketopantoate reductase PanE/ApbA C terminal JCP88_RS01370 PF02558 Ketopantoate reductase PanE/ApbA JCP88_RS01385 PF01625 Peptide methionine sulfoxide reductase JCP88_RS01395 PF13673 Acetyltransferase (GNAT) domain JCP88_RS01445 PF00884 Sulfatase JCP88_RS01455 PF00375 Sodium:dicarboxylate symporter family JCP88_RS01465 PF01416 tRNA pseudouridine synthase JCP88_RS01495 PF01625 Peptide methionine sulfoxide reductase JCP88_RS01500 PF00248 Aldo/keto reductase family JCP88_RS01505 PF07729 FCD domain JCP88_RS01505 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS01510 PF02378 Phosphotransferase system, EIIC JCP88_RS01515 PF00232 Glycosyl hydrolase family 1 JCP88_RS01520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS01525 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JCP88_RS01545 PF08240 Alcohol dehydrogenase GroES-like domain JCP88_RS01545 PF13823 Alcohol dehydrogenase GroES-associated JCP88_RS01545 PF00107 Zinc-binding dehydrogenase JCP88_RS01555 PF06100 MCRA family JCP88_RS01580 PF00282 Pyridoxal-dependent decarboxylase conserved domain JCP88_RS01590 PF00324 Amino acid permease JCP88_RS01595 PF00689 Cation transporting ATPase, C-terminus JCP88_RS01595 PF00690 Cation transporter/ATPase, N-terminus JCP88_RS01610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JCP88_RS01610 PF03466 LysR substrate binding domain JCP88_RS01615 PF00698 Acyl transferase domain JCP88_RS01620 PF16957 Malonate decarboxylase, alpha subunit, transporter JCP88_RS01625 PF06857 Malonate decarboxylase delta subunit (MdcD) JCP88_RS01630 PF01039 Carboxyl transferase domain JCP88_RS01635 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG JCP88_RS01645 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase JCP88_RS01655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS01665 PF03611 PTS system sugar-specific permease component JCP88_RS01675 PF01116 Fructose-bisphosphate aldolase class-II JCP88_RS01685 PF00293 NUDIX domain JCP88_RS01690 PF01047 MarR family JCP88_RS01695 PF13673 Acetyltransferase (GNAT) domain JCP88_RS01715 PF00860 Permease family JCP88_RS01720 PF16657 Maltogenic Amylase, C-terminal domain JCP88_RS01720 PF00128 Alpha amylase, catalytic domain JCP88_RS01725 PF00232 Glycosyl hydrolase family 1 JCP88_RS01735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS01735 PF00367 phosphotransferase system, EIIB JCP88_RS01735 PF02378 Phosphotransferase system, EIIC JCP88_RS01740 PF00232 Glycosyl hydrolase family 1 JCP88_RS01750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JCP88_RS01760 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS01760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS01770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JCP88_RS01770 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JCP88_RS01775 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JCP88_RS01775 PF01266 FAD dependent oxidoreductase JCP88_RS01780 PF00230 Major intrinsic protein JCP88_RS01790 PF01066 CDP-alcohol phosphatidyltransferase JCP88_RS01800 PF02583 Metal-sensitive transcriptional repressor JCP88_RS01805 PF00581 Rhodanese-like domain JCP88_RS01810 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS01810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS01815 PF13538 UvrD-like helicase C-terminal domain JCP88_RS01825 PF00535 Glycosyl transferase family 2 JCP88_RS01835 PF01906 Putative heavy-metal-binding JCP88_RS01845 PF03610 PTS system fructose IIA component JCP88_RS01850 PF02733 Dak1 domain JCP88_RS01855 PF02734 DAK2 domain JCP88_RS01860 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) JCP88_RS01865 PF13545 Crp-like helix-turn-helix domain JCP88_RS01865 PF00027 Cyclic nucleotide-binding domain JCP88_RS01875 PF00005 ABC transporter JCP88_RS01875 PF13732 Domain of unknown function (DUF4162) JCP88_RS01880 PF16859 Tetracyclin repressor-like, C-terminal domain JCP88_RS01880 PF00440 Bacterial regulatory proteins, tetR family JCP88_RS01890 PF00579 tRNA synthetases class I (W and Y) JCP88_RS01890 PF01479 S4 domain JCP88_RS01895 PF00282 Pyridoxal-dependent decarboxylase conserved domain JCP88_RS01900 PF13520 Amino acid permease JCP88_RS01910 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS01910 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JCP88_RS01920 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS01925 PF03632 Glycosyl hydrolase family 65 central catalytic domain JCP88_RS01925 PF03633 Glycosyl hydrolase family 65, C-terminal domain JCP88_RS01925 PF03636 Glycosyl hydrolase family 65, N-terminal domain JCP88_RS01930 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS01930 PF00367 phosphotransferase system, EIIB JCP88_RS01930 PF02378 Phosphotransferase system, EIIC JCP88_RS01935 PF03372 Endonuclease/Exonuclease/phosphatase family JCP88_RS01955 PF05870 Phenolic acid decarboxylase (PAD) JCP88_RS01960 PF03551 Transcriptional regulator PadR-like family JCP88_RS01960 PF10400 Virulence activator alpha C-term JCP88_RS01970 PF07690 Major Facilitator Superfamily JCP88_RS01990 PF02441 Flavoprotein JCP88_RS01995 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JCP88_RS02005 PF12704 MacB-like periplasmic core domain JCP88_RS02005 PF02687 FtsX-like permease family JCP88_RS02005 PF00005 ABC transporter JCP88_RS02010 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS02010 PF00072 Response regulator receiver domain JCP88_RS02015 PF00072 Response regulator receiver domain JCP88_RS02015 PF09308 LuxQ, periplasmic JCP88_RS02015 PF00512 His Kinase A (phospho-acceptor) domain JCP88_RS02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS02020 PF03466 LysR substrate binding domain JCP88_RS02020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JCP88_RS02025 PF04474 Protein of unknown function (DUF554) JCP88_RS02060 PF00005 ABC transporter JCP88_RS02070 PF01263 Aldose 1-epimerase JCP88_RS02075 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JCP88_RS02075 PF05257 CHAP domain JCP88_RS02080 PF00367 phosphotransferase system, EIIB JCP88_RS02080 PF02378 Phosphotransferase system, EIIC JCP88_RS02080 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS02085 PF05025 RbsD / FucU transport protein family JCP88_RS02090 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JCP88_RS02090 PF00294 pfkB family carbohydrate kinase JCP88_RS02095 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS02100 PF00857 Isochorismatase family JCP88_RS02105 PF00005 ABC transporter JCP88_RS02115 PF00128 Alpha amylase, catalytic domain JCP88_RS02115 PF16657 Maltogenic Amylase, C-terminal domain JCP88_RS02120 PF01594 AI-2E family transporter JCP88_RS02125 PF01297 Zinc-uptake complex component A periplasmic JCP88_RS02125 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment JCP88_RS02130 PF04397 LytTr DNA-binding domain JCP88_RS02130 PF00072 Response regulator receiver domain JCP88_RS02140 PF04647 Accessory gene regulator B JCP88_RS02150 PF01712 Deoxynucleoside kinase JCP88_RS02160 PF00580 UvrD/REP helicase N-terminal domain JCP88_RS02160 PF13361 UvrD-like helicase C-terminal domain JCP88_RS02170 PF03960 ArsC family JCP88_RS02175 PF03960 ArsC family JCP88_RS02180 PF13333 Integrase core domain JCP88_RS02180 PF00665 Integrase core domain JCP88_RS02180 PF13276 HTH-like domain JCP88_RS02205 PF00255 Glutathione peroxidase JCP88_RS02210 PF02664 S-Ribosylhomocysteinase (LuxS) JCP88_RS02215 PF01053 Cys/Met metabolism PLP-dependent enzyme JCP88_RS02225 PF00291 Pyridoxal-phosphate dependent enzyme JCP88_RS02230 PF01132 Elongation factor P (EF-P) OB domain JCP88_RS02230 PF09285 Elongation factor P, C-terminal JCP88_RS02230 PF08207 Elongation factor P (EF-P) KOW-like domain JCP88_RS02240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JCP88_RS02240 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JCP88_RS02245 PF01678 Diaminopimelate epimerase JCP88_RS02250 PF00701 Dihydrodipicolinate synthetase family JCP88_RS02255 PF01113 Dihydrodipicolinate reductase, N-terminus JCP88_RS02255 PF05173 Dihydrodipicolinate reductase, C-terminus JCP88_RS02260 PF00132 Bacterial transferase hexapeptide (six repeats) JCP88_RS02260 PF14602 Hexapeptide repeat of succinyl-transferase JCP88_RS02260 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal JCP88_RS02265 PF02774 Semialdehyde dehydrogenase, dimerisation domain JCP88_RS02265 PF01118 Semialdehyde dehydrogenase, NAD binding domain JCP88_RS02270 PF13840 ACT domain JCP88_RS02270 PF00696 Amino acid kinase family JCP88_RS02275 PF07687 Peptidase dimerisation domain JCP88_RS02275 PF01546 Peptidase family M20/M25/M40 JCP88_RS02280 PF00155 Aminotransferase class I and II JCP88_RS02285 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS02285 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS02305 PF11798 IMS family HHH motif JCP88_RS02305 PF11799 impB/mucB/samB family C-terminal domain JCP88_RS02305 PF00817 impB/mucB/samB family JCP88_RS02310 PF00288 GHMP kinases N terminal domain JCP88_RS02310 PF10509 Galactokinase galactose-binding signature JCP88_RS02310 PF08544 GHMP kinases C terminal JCP88_RS02315 PF01263 Aldose 1-epimerase JCP88_RS02320 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS02325 PF12833 Helix-turn-helix domain JCP88_RS02325 PF02311 AraC-like ligand binding domain JCP88_RS02330 PF02525 Flavodoxin-like fold JCP88_RS02345 PF00324 Amino acid permease JCP88_RS02350 PF00005 ABC transporter JCP88_RS02355 PF00950 ABC 3 transport family JCP88_RS02360 PF01297 Zinc-uptake complex component A periplasmic JCP88_RS02370 PF08331 Domain of unknown function (DUF1730) JCP88_RS02375 PF01476 LysM domain JCP88_RS02375 PF04972 BON domain JCP88_RS02385 PF01266 FAD dependent oxidoreductase JCP88_RS02390 PF07690 Major Facilitator Superfamily JCP88_RS02400 PF01316 Arginine repressor, DNA binding domain JCP88_RS02400 PF02863 Arginine repressor, C-terminal domain JCP88_RS02405 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JCP88_RS02405 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JCP88_RS02405 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JCP88_RS02405 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JCP88_RS02415 PF02566 OsmC-like protein JCP88_RS02420 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS02420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS02425 PF00857 Isochorismatase family JCP88_RS02430 PF00440 Bacterial regulatory proteins, tetR family JCP88_RS02430 PF16925 Tetracyclin repressor-like, C-terminal domain JCP88_RS02440 PF02586 SOS response associated peptidase (SRAP) JCP88_RS02475 PF05067 Manganese containing catalase JCP88_RS02480 PF01547 Bacterial extracellular solute-binding protein JCP88_RS02485 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS02490 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS02530 PF00072 Response regulator receiver domain JCP88_RS02530 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS02535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS02540 PF06800 Sugar transport protein JCP88_RS02545 PF13520 Amino acid permease JCP88_RS02550 PF05816 Toxic anion resistance protein (TelA) JCP88_RS02560 PF00293 NUDIX domain JCP88_RS02570 PF01048 Phosphorylase superfamily JCP88_RS02575 PF00857 Isochorismatase family JCP88_RS02580 PF13229 Right handed beta helix region JCP88_RS02585 PF01431 Peptidase family M13 JCP88_RS02585 PF05649 Peptidase family M13 JCP88_RS02595 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JCP88_RS02595 PF14572 Phosphoribosyl synthetase-associated domain JCP88_RS02600 PF00266 Aminotransferase class-V JCP88_RS02610 PF07690 Major Facilitator Superfamily JCP88_RS02625 PF13520 Amino acid permease JCP88_RS02630 PF00155 Aminotransferase class I and II JCP88_RS02635 PF07690 Major Facilitator Superfamily JCP88_RS02650 PF01751 Toprim domain JCP88_RS02650 PF01131 DNA topoisomerase JCP88_RS02655 PF00535 Glycosyl transferase family 2 JCP88_RS02660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JCP88_RS02660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JCP88_RS02665 PF03601 Conserved hypothetical protein 698 JCP88_RS02675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JCP88_RS02675 PF03466 LysR substrate binding domain JCP88_RS02680 PF01098 Cell cycle protein JCP88_RS02685 PF03960 ArsC family JCP88_RS02690 PF01597 Glycine cleavage H-protein JCP88_RS02695 PF00005 ABC transporter JCP88_RS02695 PF09383 NIL domain JCP88_RS02700 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS02705 PF03180 NLPA lipoprotein JCP88_RS02710 PF00005 ABC transporter JCP88_RS02715 PF01458 Uncharacterized protein family (UPF0051) JCP88_RS02720 PF00266 Aminotransferase class-V JCP88_RS02725 PF01592 NifU-like N terminal domain JCP88_RS02730 PF01458 Uncharacterized protein family (UPF0051) JCP88_RS02735 PF00589 Phage integrase family JCP88_RS02735 PF02899 Phage integrase, N-terminal SAM-like domain JCP88_RS02780 PF12161 HsdM N-terminal domain JCP88_RS02780 PF02384 N-6 DNA Methylase JCP88_RS02790 PF12008 Type I restriction and modification enzyme - subunit R C terminal JCP88_RS02790 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JCP88_RS02790 PF18766 SWI2/SNF2 ATPase JCP88_RS02810 PF02687 FtsX-like permease family JCP88_RS02810 PF12704 MacB-like periplasmic core domain JCP88_RS02810 PF00005 ABC transporter JCP88_RS02820 PF13145 PPIC-type PPIASE domain JCP88_RS02830 PF00781 Diacylglycerol kinase catalytic domain JCP88_RS02865 PF01638 HxlR-like helix-turn-helix JCP88_RS02875 PF04203 Sortase domain JCP88_RS02880 PF00874 PRD domain JCP88_RS02880 PF03123 CAT RNA binding domain JCP88_RS02885 PF02378 Phosphotransferase system, EIIC JCP88_RS02885 PF00367 phosphotransferase system, EIIB JCP88_RS02885 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS02890 PF00232 Glycosyl hydrolase family 1 JCP88_RS02895 PF07702 UTRA domain JCP88_RS02895 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS02905 PF03641 Possible lysine decarboxylase JCP88_RS02915 PF01712 Deoxynucleoside kinase JCP88_RS02930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JCP88_RS02930 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS02935 PF00232 Glycosyl hydrolase family 1 JCP88_RS02945 PF00884 Sulfatase JCP88_RS02955 PF00334 Nucleoside diphosphate kinase JCP88_RS02960 PF00690 Cation transporter/ATPase, N-terminus JCP88_RS02960 PF00689 Cation transporting ATPase, C-terminus JCP88_RS02965 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS02970 PF00005 ABC transporter JCP88_RS02970 PF09383 NIL domain JCP88_RS02975 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS02980 PF03180 NLPA lipoprotein JCP88_RS02985 PF07687 Peptidase dimerisation domain JCP88_RS02985 PF01546 Peptidase family M20/M25/M40 JCP88_RS02990 PF03553 Na+/H+ antiporter family JCP88_RS03005 PF00324 Amino acid permease JCP88_RS03015 PF02558 Ketopantoate reductase PanE/ApbA JCP88_RS03015 PF08546 Ketopantoate reductase PanE/ApbA C terminal JCP88_RS03020 PF02595 Glycerate kinase family JCP88_RS03025 PF00005 ABC transporter JCP88_RS03025 PF12848 ABC transporter JCP88_RS03030 PF00300 Histidine phosphatase superfamily (branch 1) JCP88_RS03040 PF13580 SIS domain JCP88_RS03045 PF02378 Phosphotransferase system, EIIC JCP88_RS03045 PF00367 phosphotransferase system, EIIB JCP88_RS03050 PF07972 NrdI Flavodoxin like JCP88_RS03055 PF13520 Amino acid permease JCP88_RS03060 PF12679 ABC-2 family transporter protein JCP88_RS03065 PF00005 ABC transporter JCP88_RS03070 PF00893 Small Multidrug Resistance protein JCP88_RS03085 PF01470 Pyroglutamyl peptidase JCP88_RS03100 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JCP88_RS03130 PF03167 Uracil DNA glycosylase superfamily JCP88_RS03135 PF01515 Phosphate acetyl/butaryl transferase JCP88_RS03140 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JCP88_RS03145 PF13302 Acetyltransferase (GNAT) domain JCP88_RS03150 PF14579 Helix-hairpin-helix motif JCP88_RS03150 PF14480 DNA polymerase III polC-type N-terminus I JCP88_RS03150 PF00929 Exonuclease JCP88_RS03150 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JCP88_RS03150 PF02811 PHP domain JCP88_RS03150 PF07733 Bacterial DNA polymerase III alpha NTPase domain JCP88_RS03150 PF11490 DNA polymerase III polC-type N-terminus II JCP88_RS03155 PF03372 Endonuclease/Exonuclease/phosphatase family JCP88_RS03160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JCP88_RS03165 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JCP88_RS03165 PF01565 FAD binding domain JCP88_RS03190 PF14537 Cytochrome c3 JCP88_RS03190 PF00890 FAD binding domain JCP88_RS03200 PF13460 NAD(P)H-binding JCP88_RS03205 PF12822 ECF transporter, substrate-specific component JCP88_RS03210 PF02441 Flavoprotein JCP88_RS03215 PF04127 DNA / pantothenate metabolism flavoprotein JCP88_RS03215 PF02441 Flavoprotein JCP88_RS03220 PF00107 Zinc-binding dehydrogenase JCP88_RS03220 PF08240 Alcohol dehydrogenase GroES-like domain JCP88_RS03230 PF00005 ABC transporter JCP88_RS03230 PF08402 TOBE domain JCP88_RS03235 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS03240 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS03245 PF13416 Bacterial extracellular solute-binding protein JCP88_RS03250 PF00158 Sigma-54 interaction domain JCP88_RS03250 PF02954 Bacterial regulatory protein, Fis family JCP88_RS03260 PF03830 PTS system sorbose subfamily IIB component JCP88_RS03265 PF03609 PTS system sorbose-specific iic component JCP88_RS03270 PF03613 PTS system mannose/fructose/sorbose family IID component JCP88_RS03285 PF00480 ROK family JCP88_RS03315 PF00589 Phage integrase family JCP88_RS03315 PF14659 Phage integrase, N-terminal SAM-like domain JCP88_RS03320 PF01717 Cobalamin-independent synthase, Catalytic domain JCP88_RS03330 PF13411 MerR HTH family regulatory protein JCP88_RS03335 PF03951 Glutamine synthetase, beta-Grasp domain JCP88_RS03335 PF00120 Glutamine synthetase, catalytic domain JCP88_RS03340 PF00117 Glutamine amidotransferase class-I JCP88_RS03340 PF06418 CTP synthase N-terminus JCP88_RS03345 PF01116 Fructose-bisphosphate aldolase class-II JCP88_RS03350 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JCP88_RS03355 PF07497 Rho termination factor, RNA-binding domain JCP88_RS03355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JCP88_RS03355 PF07498 Rho termination factor, N-terminal domain JCP88_RS03360 PF01197 Ribosomal protein L31 JCP88_RS03370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS03370 PF02378 Phosphotransferase system, EIIC JCP88_RS03375 PF01116 Fructose-bisphosphate aldolase class-II JCP88_RS03380 PF00455 DeoR C terminal sensor domain JCP88_RS03380 PF08220 DeoR-like helix-turn-helix domain JCP88_RS03390 PF07690 Major Facilitator Superfamily JCP88_RS03400 PF13545 Crp-like helix-turn-helix domain JCP88_RS03420 PF12169 DNA polymerase III subunits gamma and tau domain III JCP88_RS03425 PF02575 YbaB/EbfC DNA-binding family JCP88_RS03430 PF13662 Toprim domain JCP88_RS03430 PF02132 RecR protein JCP88_RS03435 PF02223 Thymidylate kinase JCP88_RS03440 PF06153 Cyclic-di-AMP receptor JCP88_RS03445 PF09115 DNA polymerase III, delta subunit, C terminal JCP88_RS03450 PF04468 PSP1 C-terminal conserved region JCP88_RS03455 PF06156 Initiation control protein YabA JCP88_RS03460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JCP88_RS03465 PF11798 IMS family HHH motif JCP88_RS03465 PF00817 impB/mucB/samB family JCP88_RS03465 PF11799 impB/mucB/samB family C-terminal domain JCP88_RS03475 PF13597 Anaerobic ribonucleoside-triphosphate reductase JCP88_RS03475 PF03477 ATP cone domain JCP88_RS03480 PF00005 ABC transporter JCP88_RS03485 PF02687 FtsX-like permease family JCP88_RS03495 PF13193 AMP-binding enzyme C-terminal domain JCP88_RS03495 PF00501 AMP-binding enzyme JCP88_RS03500 PF03062 MBOAT, membrane-bound O-acyltransferase family JCP88_RS03505 PF00550 Phosphopantetheine attachment site JCP88_RS03510 PF04914 DltD protein JCP88_RS03515 PF05343 M42 glutamyl aminopeptidase JCP88_RS03525 PF12706 Beta-lactamase superfamily domain JCP88_RS03530 PF03099 Biotin/lipoate A/B protein ligase family JCP88_RS03530 PF10437 Bacterial lipoate protein ligase C-terminus JCP88_RS03540 PF00872 Transposase, Mutator family JCP88_RS03560 PF06993 Protein of unknown function (DUF1304) JCP88_RS03565 PF00916 Sulfate permease family JCP88_RS03565 PF01740 STAS domain JCP88_RS03575 PF00829 Ribosomal prokaryotic L21 protein JCP88_RS03585 PF01016 Ribosomal L27 protein JCP88_RS03590 PF13683 Integrase core domain JCP88_RS03590 PF01610 Transposase JCP88_RS03595 PF00874 PRD domain JCP88_RS03595 PF03610 PTS system fructose IIA component JCP88_RS03595 PF00158 Sigma-54 interaction domain JCP88_RS03600 PF03610 PTS system fructose IIA component JCP88_RS03600 PF03830 PTS system sorbose subfamily IIB component JCP88_RS03605 PF03830 PTS system sorbose subfamily IIB component JCP88_RS03605 PF03610 PTS system fructose IIA component JCP88_RS03610 PF03609 PTS system sorbose-specific iic component JCP88_RS03615 PF03613 PTS system mannose/fructose/sorbose family IID component JCP88_RS03625 PF04226 Transglycosylase associated protein JCP88_RS03630 PF00557 Metallopeptidase family M24 JCP88_RS03630 PF01321 Creatinase/Prolidase N-terminal domain JCP88_RS03635 PF03780 Asp23 family, cell envelope-related function JCP88_RS03640 PF01029 NusB family JCP88_RS03645 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JCP88_RS03645 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JCP88_RS03650 PF02601 Exonuclease VII, large subunit JCP88_RS03650 PF13742 OB-fold nucleic acid binding domain JCP88_RS03655 PF02609 Exonuclease VII small subunit JCP88_RS03660 PF00348 Polyprenyl synthetase JCP88_RS03665 PF01479 S4 domain JCP88_RS03665 PF01728 FtsJ-like methyltransferase JCP88_RS03670 PF01316 Arginine repressor, DNA binding domain JCP88_RS03670 PF02863 Arginine repressor, C-terminal domain JCP88_RS03675 PF13476 AAA domain JCP88_RS03695 PF02381 MraZ protein, putative antitoxin-like JCP88_RS03700 PF01795 MraW methylase family JCP88_RS03710 PF00905 Penicillin binding protein transpeptidase domain JCP88_RS03710 PF03717 Penicillin-binding Protein dimerisation domain JCP88_RS03710 PF03793 PASTA domain JCP88_RS03715 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JCP88_RS03715 PF00953 Glycosyl transferase family 4 JCP88_RS03720 PF08245 Mur ligase middle domain JCP88_RS03720 PF02875 Mur ligase family, glutamate ligase domain JCP88_RS03725 PF03033 Glycosyltransferase family 28 N-terminal domain JCP88_RS03725 PF04101 Glycosyltransferase family 28 C-terminal domain JCP88_RS03730 PF08478 POTRA domain, FtsQ-type JCP88_RS03730 PF03799 Cell division protein FtsQ JCP88_RS03735 PF02491 SHS2 domain inserted in FTSA JCP88_RS03735 PF11983 Membrane-attachment and polymerisation-promoting switch JCP88_RS03740 PF12327 FtsZ family, C-terminal domain JCP88_RS03740 PF00091 Tubulin/FtsZ family, GTPase domain JCP88_RS03745 PF01168 Alanine racemase, N-terminal domain JCP88_RS03750 PF04472 Cell division protein SepF JCP88_RS03760 PF01479 S4 domain JCP88_RS03760 PF17774 Putative RNA-binding domain in YlmH JCP88_RS03765 PF05103 DivIVA protein JCP88_RS03770 PF00133 tRNA synthetases class I (I, L, M and V) JCP88_RS03770 PF06827 Zinc finger found in FPG and IleRS JCP88_RS03770 PF08264 Anticodon-binding domain of tRNA JCP88_RS03775 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JCP88_RS03775 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JCP88_RS03790 PF03749 Sugar fermentation stimulation protein RE domain JCP88_RS03790 PF17746 SfsA N-terminal OB domain JCP88_RS03795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JCP88_RS03800 PF00270 DEAD/DEAH box helicase JCP88_RS03800 PF00271 Helicase conserved C-terminal domain JCP88_RS03805 PF00158 Sigma-54 interaction domain JCP88_RS03805 PF03610 PTS system fructose IIA component JCP88_RS03805 PF00874 PRD domain JCP88_RS03810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS03815 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JCP88_RS03820 PF02378 Phosphotransferase system, EIIC JCP88_RS03880 PF01381 Helix-turn-helix JCP88_RS04145 PF00872 Transposase, Mutator family JCP88_RS04180 PF00313 'Cold-shock' DNA-binding domain JCP88_RS04190 PF17770 Ribonuclease J C-terminal domain JCP88_RS04190 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JCP88_RS04190 PF00753 Metallo-beta-lactamase superfamily JCP88_RS04195 PF07288 Protein of unknown function (DUF1447) JCP88_RS04200 PF00664 ABC transporter transmembrane region JCP88_RS04200 PF00005 ABC transporter JCP88_RS04205 PF00664 ABC transporter transmembrane region JCP88_RS04205 PF00005 ABC transporter JCP88_RS04215 PF00132 Bacterial transferase hexapeptide (six repeats) JCP88_RS04220 PF00574 Clp protease JCP88_RS04230 PF03009 Glycerophosphoryl diester phosphodiesterase family JCP88_RS04240 PF13167 GTP-binding GTPase N-terminal JCP88_RS04240 PF16360 GTP-binding GTPase Middle Region JCP88_RS04240 PF01926 50S ribosome-binding GTPase JCP88_RS04260 PF02645 Uncharacterised protein, DegV family COG1307 JCP88_RS04265 PF00072 Response regulator receiver domain JCP88_RS04265 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS04270 PF13426 PAS domain JCP88_RS04270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS04270 PF00512 His Kinase A (phospho-acceptor) domain JCP88_RS04270 PF00672 HAMP domain JCP88_RS04285 PF00753 Metallo-beta-lactamase superfamily JCP88_RS04290 PF13460 NAD(P)H-binding JCP88_RS04295 PF02378 Phosphotransferase system, EIIC JCP88_RS04305 PF00166 Chaperonin 10 Kd subunit JCP88_RS04310 PF00118 TCP-1/cpn60 chaperonin family JCP88_RS04340 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS04340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JCP88_RS04345 PF13411 MerR HTH family regulatory protein JCP88_RS04345 PF07739 TipAS antibiotic-recognition domain JCP88_RS04355 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JCP88_RS04355 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JCP88_RS04355 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JCP88_RS04360 PF02540 NAD synthase JCP88_RS04370 PF06964 Alpha-L-arabinofuranosidase C-terminal domain JCP88_RS04380 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS04385 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS04395 PF06964 Alpha-L-arabinofuranosidase C-terminal domain JCP88_RS04400 PF04616 Glycosyl hydrolases family 43 JCP88_RS04400 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain JCP88_RS04405 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS04410 PF00083 Sugar (and other) transporter JCP88_RS04420 PF00596 Class II Aldolase and Adducin N-terminal domain JCP88_RS04425 PF02610 L-arabinose isomerase JCP88_RS04425 PF11762 L-arabinose isomerase C-terminal domain JCP88_RS04435 PF00884 Sulfatase JCP88_RS04450 PF10282 Lactonase, 7-bladed beta-propeller JCP88_RS04460 PF01594 AI-2E family transporter JCP88_RS04470 PF02525 Flavodoxin-like fold JCP88_RS04485 PF00005 ABC transporter JCP88_RS04485 PF00664 ABC transporter transmembrane region JCP88_RS04490 PF00664 ABC transporter transmembrane region JCP88_RS04490 PF00005 ABC transporter JCP88_RS04500 PF00144 Beta-lactamase JCP88_RS04505 PF01238 Phosphomannose isomerase type I JCP88_RS04510 PF02378 Phosphotransferase system, EIIC JCP88_RS04510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS04515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS04515 PF08279 HTH domain JCP88_RS04515 PF05043 Mga helix-turn-helix domain JCP88_RS04520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS04530 PF00005 ABC transporter JCP88_RS04535 PF02378 Phosphotransferase system, EIIC JCP88_RS04535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS04540 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS04545 PF01232 Mannitol dehydrogenase Rossmann domain JCP88_RS04545 PF08125 Mannitol dehydrogenase C-terminal domain JCP88_RS04550 PF07685 CobB/CobQ-like glutamine amidotransferase domain JCP88_RS04555 PF08245 Mur ligase middle domain JCP88_RS04555 PF08353 Domain of unknown function (DUF1727) JCP88_RS04560 PF02386 Cation transport protein JCP88_RS04565 PF02677 Epoxyqueuosine reductase QueH JCP88_RS04580 PF10502 Signal peptidase, peptidase S26 JCP88_RS04585 PF01209 ubiE/COQ5 methyltransferase family JCP88_RS04595 PF00265 Thymidine kinase JCP88_RS04600 PF00472 RF-1 domain JCP88_RS04600 PF03462 PCRF domain JCP88_RS04605 PF17827 PrmC N-terminal domain JCP88_RS04605 PF05175 Methyltransferase small domain JCP88_RS04615 PF03481 Putative GTP-binding controlling metal-binding JCP88_RS04615 PF01300 Telomere recombination JCP88_RS04620 PF00464 Serine hydroxymethyltransferase JCP88_RS04625 PF07859 alpha/beta hydrolase fold JCP88_RS04665 PF00872 Transposase, Mutator family JCP88_RS04670 PF05738 Cna protein B-type domain JCP88_RS04670 PF17802 Prealbumin-like fold domain JCP88_RS04670 PF05737 Collagen binding domain JCP88_RS04680 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS04685 PF00005 ABC transporter JCP88_RS04690 PF00497 Bacterial extracellular solute-binding proteins, family 3 JCP88_RS04695 PF00232 Glycosyl hydrolase family 1 JCP88_RS04700 PF01580 FtsK/SpoIIIE family JCP88_RS04700 PF09397 Ftsk gamma domain JCP88_RS04700 PF17854 FtsK alpha domain JCP88_RS04705 PF04055 Radical SAM superfamily JCP88_RS04715 PF00583 Acetyltransferase (GNAT) family JCP88_RS04720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JCP88_RS04730 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS04735 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS04735 PF12911 N-terminal TM domain of oligopeptide transport permease C JCP88_RS04740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JCP88_RS04740 PF00005 ABC transporter JCP88_RS04745 PF00005 ABC transporter JCP88_RS04745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JCP88_RS04750 PF12323 Helix-turn-helix domain JCP88_RS04750 PF01385 Probable transposase JCP88_RS04750 PF07282 Putative transposase DNA-binding domain JCP88_RS04765 PF08264 Anticodon-binding domain of tRNA JCP88_RS04765 PF01588 Putative tRNA binding domain JCP88_RS04765 PF09334 tRNA synthetases class I (M) JCP88_RS04775 PF13520 Amino acid permease JCP88_RS04780 PF01026 TatD related DNase JCP88_RS04785 PF13331 Domain of unknown function (DUF4093) JCP88_RS04785 PF01751 Toprim domain JCP88_RS04790 PF00398 Ribosomal RNA adenine dimethylase JCP88_RS04800 PF00005 ABC transporter JCP88_RS04800 PF17912 MalK OB fold domain JCP88_RS04800 PF03459 TOBE domain JCP88_RS04805 PF02142 MGS-like domain JCP88_RS04815 PF00664 ABC transporter transmembrane region JCP88_RS04815 PF00005 ABC transporter JCP88_RS04820 PF00005 ABC transporter JCP88_RS04820 PF00664 ABC transporter transmembrane region JCP88_RS04830 PF00158 Sigma-54 interaction domain JCP88_RS04830 PF00874 PRD domain JCP88_RS04840 PF03830 PTS system sorbose subfamily IIB component JCP88_RS04845 PF03609 PTS system sorbose-specific iic component JCP88_RS04850 PF03613 PTS system mannose/fructose/sorbose family IID component JCP88_RS04855 PF01380 SIS domain JCP88_RS04860 PF13580 SIS domain JCP88_RS04865 PF01610 Transposase JCP88_RS04865 PF13683 Integrase core domain JCP88_RS04870 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JCP88_RS04870 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JCP88_RS04875 PF00483 Nucleotidyl transferase JCP88_RS04885 PF13580 SIS domain JCP88_RS04890 PF03606 C4-dicarboxylate anaerobic carrier JCP88_RS04895 PF01979 Amidohydrolase family JCP88_RS04905 PF00005 ABC transporter JCP88_RS04910 PF02687 FtsX-like permease family JCP88_RS04910 PF12704 MacB-like periplasmic core domain JCP88_RS04915 PF00753 Metallo-beta-lactamase superfamily JCP88_RS04915 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JCP88_RS04915 PF17770 Ribonuclease J C-terminal domain JCP88_RS04930 PF12706 Beta-lactamase superfamily domain JCP88_RS04935 PF03061 Thioesterase superfamily JCP88_RS04935 PF00571 CBS domain JCP88_RS04935 PF07085 DRTGG domain JCP88_RS04935 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS04940 PF02272 DHHA1 domain JCP88_RS04940 PF01368 DHH family JCP88_RS04945 PF03831 PhnA domain JCP88_RS04945 PF08274 PhnA Zinc-Ribbon JCP88_RS04950 PF04298 Putative neutral zinc metallopeptidase JCP88_RS04965 PF17126 RsmF rRNA methyltransferase first C-terminal domain JCP88_RS04965 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF JCP88_RS04965 PF01189 16S rRNA methyltransferase RsmB/F JCP88_RS04975 PF13556 PucR C-terminal helix-turn-helix domain JCP88_RS04980 PF14437 MafB19-like deaminase JCP88_RS04990 PF02872 5'-nucleotidase, C-terminal domain JCP88_RS04995 PF06265 Protein of unknown function (DUF1027) JCP88_RS05000 PF13344 Haloacid dehalogenase-like hydrolase JCP88_RS05010 PF04608 Phosphatidylglycerophosphatase A JCP88_RS05015 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS05025 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JCP88_RS05030 PF00155 Aminotransferase class I and II JCP88_RS05035 PF00575 S1 RNA binding domain JCP88_RS05065 PF13817 IS66 C-terminal element JCP88_RS05065 PF13007 Transposase C of IS166 homeodomain JCP88_RS05065 PF03050 Transposase IS66 family JCP88_RS05065 PF13005 zinc-finger binding domain of transposase IS66 JCP88_RS05115 PF03051 Peptidase C1-like family JCP88_RS05120 PF03881 Fructosamine kinase JCP88_RS05130 PF00710 Asparaginase, N-terminal JCP88_RS05130 PF17763 Glutaminase/Asparaginase C-terminal domain JCP88_RS05135 PF01904 Protein of unknown function DUF72 JCP88_RS05150 PF06160 Septation ring formation regulator, EzrA JCP88_RS05155 PF00266 Aminotransferase class-V JCP88_RS05160 PF02926 THUMP domain JCP88_RS05160 PF02568 Thiamine biosynthesis protein (ThiI) JCP88_RS05165 PF06971 Putative DNA-binding protein N-terminus JCP88_RS05165 PF02629 CoA binding domain JCP88_RS05170 PF10458 Valyl tRNA synthetase tRNA binding arm JCP88_RS05170 PF00133 tRNA synthetases class I (I, L, M and V) JCP88_RS05170 PF08264 Anticodon-binding domain of tRNA JCP88_RS05175 PF08245 Mur ligase middle domain JCP88_RS05175 PF02875 Mur ligase family, glutamate ligase domain JCP88_RS05180 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS05185 PF04002 RadC-like JAB domain JCP88_RS05190 PF00239 Resolvase, N terminal domain JCP88_RS05190 PF07508 Recombinase JCP88_RS05190 PF13408 Recombinase zinc beta ribbon domain JCP88_RS05200 PF01381 Helix-turn-helix JCP88_RS05240 PF09588 YqaJ-like viral recombinase domain JCP88_RS05245 PF03837 RecT family JCP88_RS05255 PF00308 Bacterial dnaA protein JCP88_RS05255 PF08299 Bacterial dnaA protein helix-turn-helix JCP88_RS05255 PF11638 DnaA N-terminal domain JCP88_RS05400 PF01551 Peptidase family M23 JCP88_RS05400 PF01464 Transglycosylase SLT domain JCP88_RS05400 PF10145 Phage-related minor tail protein JCP88_RS05485 PF00877 NlpC/P60 family JCP88_RS05495 PF01695 IstB-like ATP binding protein JCP88_RS05505 PF01609 Transposase DDE domain JCP88_RS05520 PF12802 MarR family JCP88_RS05530 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS05540 PF00367 phosphotransferase system, EIIB JCP88_RS05540 PF02378 Phosphotransferase system, EIIC JCP88_RS05545 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS05550 PF00480 ROK family JCP88_RS05555 PF00874 PRD domain JCP88_RS05555 PF00158 Sigma-54 interaction domain JCP88_RS05555 PF03610 PTS system fructose IIA component JCP88_RS05560 PF03609 PTS system sorbose-specific iic component JCP88_RS05565 PF03613 PTS system mannose/fructose/sorbose family IID component JCP88_RS05570 PF03610 PTS system fructose IIA component JCP88_RS05570 PF03830 PTS system sorbose subfamily IIB component JCP88_RS05580 PF00251 Glycosyl hydrolases family 32 N-terminal domain JCP88_RS05580 PF08244 Glycosyl hydrolases family 32 C terminal JCP88_RS05600 PF03050 Transposase IS66 family JCP88_RS05600 PF13817 IS66 C-terminal element JCP88_RS05600 PF13007 Transposase C of IS166 homeodomain JCP88_RS05600 PF13005 zinc-finger binding domain of transposase IS66 JCP88_RS05625 PF00589 Phage integrase family JCP88_RS05625 PF02899 Phage integrase, N-terminal SAM-like domain JCP88_RS05680 PF07690 Major Facilitator Superfamily JCP88_RS05685 PF13411 MerR HTH family regulatory protein JCP88_RS05690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JCP88_RS05690 PF03466 LysR substrate binding domain JCP88_RS05700 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS05710 PF00872 Transposase, Mutator family JCP88_RS05720 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JCP88_RS05720 PF00205 Thiamine pyrophosphate enzyme, central domain JCP88_RS05720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JCP88_RS05725 PF03306 Alpha-acetolactate decarboxylase JCP88_RS05730 PF13185 GAF domain JCP88_RS05750 PF00872 Transposase, Mutator family JCP88_RS05775 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS05775 PF00072 Response regulator receiver domain JCP88_RS05780 PF00672 HAMP domain JCP88_RS05780 PF00512 His Kinase A (phospho-acceptor) domain JCP88_RS05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS05800 PF00884 Sulfatase JCP88_RS05805 PF17785 PUA-like domain JCP88_RS05805 PF10672 S-adenosylmethionine-dependent methyltransferase JCP88_RS05810 PF01487 Type I 3-dehydroquinase JCP88_RS05815 PF04073 Aminoacyl-tRNA editing domain JCP88_RS05825 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JCP88_RS05825 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JCP88_RS05830 PF00342 Phosphoglucose isomerase JCP88_RS05860 PF03009 Glycerophosphoryl diester phosphodiesterase family JCP88_RS05875 PF02627 Carboxymuconolactone decarboxylase family JCP88_RS05895 PF00440 Bacterial regulatory proteins, tetR family JCP88_RS05895 PF08359 YsiA-like protein, C-terminal region JCP88_RS05905 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family JCP88_RS05910 PF13537 Glutamine amidotransferase domain JCP88_RS05910 PF00733 Asparagine synthase JCP88_RS05915 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) JCP88_RS05920 PF00471 Ribosomal protein L33 JCP88_RS05925 PF00186 Dihydrofolate reductase JCP88_RS05935 PF00005 ABC transporter JCP88_RS05940 PF01032 FecCD transport family JCP88_RS05945 PF01032 FecCD transport family JCP88_RS05950 PF01812 5-formyltetrahydrofolate cyclo-ligase family JCP88_RS05965 PF00480 ROK family JCP88_RS05970 PF00581 Rhodanese-like domain JCP88_RS05975 PF04343 Protein of unknown function, DUF488 JCP88_RS05990 PF16363 GDP-mannose 4,6 dehydratase JCP88_RS05995 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JCP88_RS05995 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JCP88_RS06000 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS06005 PF00814 Glycoprotease family JCP88_RS06010 PF00583 Acetyltransferase (GNAT) family JCP88_RS06015 PF00583 Acetyltransferase (GNAT) family JCP88_RS06020 PF00814 Glycoprotease family JCP88_RS06025 PF13545 Crp-like helix-turn-helix domain JCP88_RS06025 PF00027 Cyclic nucleotide-binding domain JCP88_RS06035 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JCP88_RS06035 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JCP88_RS06040 PF00696 Amino acid kinase family JCP88_RS06050 PF05746 DALR anticodon binding domain JCP88_RS06050 PF03485 Arginyl tRNA synthetase N terminal domain JCP88_RS06050 PF00750 tRNA synthetases class I (R) JCP88_RS06055 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS06060 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS06065 PF00266 Aminotransferase class-V JCP88_RS06070 PF02863 Arginine repressor, C-terminal domain JCP88_RS06070 PF01316 Arginine repressor, DNA binding domain JCP88_RS06075 PF00318 Ribosomal protein S2 JCP88_RS06080 PF00889 Elongation factor TS JCP88_RS06085 PF00696 Amino acid kinase family JCP88_RS06090 PF01765 Ribosome recycling factor JCP88_RS06100 PF01255 Putative undecaprenyl diphosphate synthase JCP88_RS06110 PF02163 Peptidase family M50 JCP88_RS06110 PF17820 PDZ domain JCP88_RS06115 PF03129 Anticodon binding domain JCP88_RS06115 PF04073 Aminoacyl-tRNA editing domain JCP88_RS06115 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JCP88_RS06120 PF02811 PHP domain JCP88_RS06120 PF14579 Helix-hairpin-helix motif JCP88_RS06120 PF07733 Bacterial DNA polymerase III alpha NTPase domain JCP88_RS06120 PF00929 Exonuclease JCP88_RS06120 PF11490 DNA polymerase III polC-type N-terminus II JCP88_RS06120 PF14480 DNA polymerase III polC-type N-terminus I JCP88_RS06120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JCP88_RS06125 PF02576 RimP N-terminal domain JCP88_RS06125 PF17384 RimP C-terminal SH3 domain JCP88_RS06130 PF00575 S1 RNA binding domain JCP88_RS06130 PF13184 NusA-like KH domain JCP88_RS06130 PF08529 NusA N-terminal domain JCP88_RS06135 PF04296 Protein of unknown function (DUF448) JCP88_RS06140 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JCP88_RS06145 PF04760 Translation initiation factor IF-2, N-terminal region JCP88_RS06145 PF00009 Elongation factor Tu GTP binding domain JCP88_RS06145 PF11987 Translation-initiation factor 2 JCP88_RS06150 PF02033 Ribosome-binding factor A JCP88_RS06160 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS06170 PF16198 tRNA pseudouridylate synthase B C-terminal domain JCP88_RS06170 PF01509 TruB family pseudouridylate synthase (N terminal domain) JCP88_RS06175 PF01687 Riboflavin kinase JCP88_RS06175 PF06574 FAD synthetase JCP88_RS06185 PF06800 Sugar transport protein JCP88_RS06190 PF12728 Helix-turn-helix domain JCP88_RS06195 PF08818 Domain of unknown function (DU1801) JCP88_RS06205 PF02016 LD-carboxypeptidase N-terminal domain JCP88_RS06205 PF17676 LD-carboxypeptidase C-terminal domain JCP88_RS06215 PF01965 DJ-1/PfpI family JCP88_RS06225 PF04055 Radical SAM superfamily JCP88_RS06225 PF06969 HemN C-terminal domain JCP88_RS06230 PF01628 HrcA protein C terminal domain JCP88_RS06235 PF01025 GrpE JCP88_RS06240 PF00012 Hsp70 protein JCP88_RS06245 PF01556 DnaJ C terminal domain JCP88_RS06245 PF00684 DnaJ central domain JCP88_RS06245 PF00226 DnaJ domain JCP88_RS06250 PF05651 Putative sugar diacid recognition JCP88_RS06250 PF17853 GGDEF-like domain JCP88_RS06250 PF13556 PucR C-terminal helix-turn-helix domain JCP88_RS06260 PF00005 ABC transporter JCP88_RS06265 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS06270 PF12344 Ultra-violet resistance protein B JCP88_RS06270 PF17757 UvrB interaction domain JCP88_RS06270 PF04851 Type III restriction enzyme, res subunit JCP88_RS06270 PF00271 Helicase conserved C-terminal domain JCP88_RS06270 PF02151 UvrB/uvrC motif JCP88_RS06275 PF17760 UvrA interaction domain JCP88_RS06275 PF00005 ABC transporter JCP88_RS06275 PF17755 UvrA DNA-binding domain JCP88_RS06285 PF01177 Asp/Glu/Hydantoin racemase JCP88_RS06290 PF03668 P-loop ATPase protein family JCP88_RS06295 PF01933 Uncharacterised protein family UPF0052 JCP88_RS06300 PF14527 WhiA LAGLIDADG-like domain JCP88_RS06300 PF02650 WhiA C-terminal HTH domain JCP88_RS06300 PF10298 WhiA N-terminal LAGLIDADG-like domain JCP88_RS06360 PF02457 DisA bacterial checkpoint controller nucleotide-binding JCP88_RS06370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JCP88_RS06370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JCP88_RS06370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JCP88_RS06370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JCP88_RS06375 PF01380 SIS domain JCP88_RS06385 PF01343 Peptidase family S49 JCP88_RS06390 PF06271 RDD family JCP88_RS06400 PF05698 Bacterial trigger factor protein (TF) C-terminus JCP88_RS06400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JCP88_RS06400 PF05697 Bacterial trigger factor protein (TF) JCP88_RS06405 PF10431 C-terminal, D2-small domain, of ClpB protein JCP88_RS06405 PF06689 ClpX C4-type zinc finger JCP88_RS06405 PF07724 AAA domain (Cdc48 subfamily) JCP88_RS06410 PF01926 50S ribosome-binding GTPase JCP88_RS06430 PF00455 DeoR C terminal sensor domain JCP88_RS06430 PF08220 DeoR-like helix-turn-helix domain JCP88_RS06435 PF00294 pfkB family carbohydrate kinase JCP88_RS06440 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS06440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS06445 PF00654 Voltage gated chloride channel JCP88_RS06450 PF00580 UvrD/REP helicase N-terminal domain JCP88_RS06450 PF13361 UvrD-like helicase C-terminal domain JCP88_RS06455 PF00533 BRCA1 C Terminus (BRCT) domain JCP88_RS06455 PF01653 NAD-dependent DNA ligase adenylation domain JCP88_RS06455 PF12826 Helix-hairpin-helix motif JCP88_RS06455 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JCP88_RS06455 PF03120 NAD-dependent DNA ligase OB-fold domain JCP88_RS06460 PF02686 Glu-tRNAGln amidotransferase C subunit JCP88_RS06465 PF01425 Amidase JCP88_RS06470 PF02934 GatB/GatE catalytic domain JCP88_RS06470 PF02637 GatB domain JCP88_RS06475 PF00781 Diacylglycerol kinase catalytic domain JCP88_RS06480 PF05958 tRNA (Uracil-5-)-methyltransferase JCP88_RS06490 PF01717 Cobalamin-independent synthase, Catalytic domain JCP88_RS06500 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS06505 PF16874 Glycosyl hydrolase family 36 C-terminal domain JCP88_RS06505 PF16875 Glycosyl hydrolase family 36 N-terminal domain JCP88_RS06510 PF00703 Glycosyl hydrolases family 2 JCP88_RS06510 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JCP88_RS06510 PF02837 Glycosyl hydrolases family 2, sugar binding domain JCP88_RS06515 PF02929 Beta galactosidase small chain JCP88_RS06520 PF18152 DAHP synthase ferredoxin-like domain JCP88_RS06520 PF00793 DAHP synthetase I family JCP88_RS06525 PF01761 3-dehydroquinate synthase JCP88_RS06530 PF01264 Chorismate synthase JCP88_RS06535 PF02153 Prephenate dehydrogenase JCP88_RS06535 PF01842 ACT domain JCP88_RS06540 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JCP88_RS06545 PF01202 Shikimate kinase JCP88_RS06550 PF00800 Prephenate dehydratase JCP88_RS06555 PF00672 HAMP domain JCP88_RS06555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS06555 PF02743 Cache domain JCP88_RS06555 PF06580 Histidine kinase JCP88_RS06560 PF12833 Helix-turn-helix domain JCP88_RS06565 PF12833 Helix-turn-helix domain JCP88_RS06565 PF00072 Response regulator receiver domain JCP88_RS06570 PF13416 Bacterial extracellular solute-binding protein JCP88_RS06575 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS06580 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS06585 PF07556 Protein of unknown function (DUF1538) JCP88_RS06590 PF07556 Protein of unknown function (DUF1538) JCP88_RS06610 PF00300 Histidine phosphatase superfamily (branch 1) JCP88_RS06615 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS06625 PF00375 Sodium:dicarboxylate symporter family JCP88_RS06635 PF13683 Integrase core domain JCP88_RS06635 PF01610 Transposase JCP88_RS06640 PF12368 Rhodanase C-terminal JCP88_RS06640 PF00581 Rhodanese-like domain JCP88_RS06640 PF17773 UPF0176 acylphosphatase like domain JCP88_RS06650 PF09371 Tex-like protein N-terminal domain JCP88_RS06650 PF00575 S1 RNA binding domain JCP88_RS06650 PF16921 Tex protein YqgF-like domain JCP88_RS06650 PF17674 HHH domain JCP88_RS06655 PF10263 SprT-like family JCP88_RS06660 PF02698 DUF218 domain JCP88_RS06665 PF02875 Mur ligase family, glutamate ligase domain JCP88_RS06665 PF08245 Mur ligase middle domain JCP88_RS06665 PF01225 Mur ligase family, catalytic domain JCP88_RS06675 PF01027 Inhibitor of apoptosis-promoting Bax1 JCP88_RS06680 PF00476 DNA polymerase family A JCP88_RS06680 PF01367 5'-3' exonuclease, C-terminal SAM fold JCP88_RS06680 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JCP88_RS06685 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JCP88_RS06685 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JCP88_RS06685 PF06827 Zinc finger found in FPG and IleRS JCP88_RS06690 PF01121 Dephospho-CoA kinase JCP88_RS06700 PF03477 ATP cone domain JCP88_RS06710 PF01695 IstB-like ATP binding protein JCP88_RS06710 PF07319 Primosomal protein DnaI N-terminus JCP88_RS06720 PF04816 tRNA (adenine(22)-N(1))-methyltransferase JCP88_RS06725 PF01784 NIF3 (NGG1p interacting factor 3) JCP88_RS06730 PF07687 Peptidase dimerisation domain JCP88_RS06730 PF01546 Peptidase family M20/M25/M40 JCP88_RS06735 PF00781 Diacylglycerol kinase catalytic domain JCP88_RS06750 PF17871 AAA lid domain JCP88_RS06750 PF10431 C-terminal, D2-small domain, of ClpB protein JCP88_RS06750 PF02861 Clp amino terminal domain, pathogenicity island component JCP88_RS06750 PF07724 AAA domain (Cdc48 subfamily) JCP88_RS06750 PF00004 ATPase family associated with various cellular activities (AAA) JCP88_RS06770 PF06421 GTP-binding protein LepA C-terminus JCP88_RS06770 PF03144 Elongation factor Tu domain 2 JCP88_RS06770 PF00009 Elongation factor Tu GTP binding domain JCP88_RS06770 PF00679 Elongation factor G C-terminus JCP88_RS06830 PF02486 Replication initiation factor JCP88_RS06830 PF18106 Rolling Circle replication initiation protein N-terminal domain JCP88_RS06870 PF12648 TcpE family JCP88_RS06930 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS06930 PF07702 UTRA domain JCP88_RS06935 PF08125 Mannitol dehydrogenase C-terminal domain JCP88_RS06935 PF01232 Mannitol dehydrogenase Rossmann domain JCP88_RS06940 PF03786 D-mannonate dehydratase (UxuA) JCP88_RS06945 PF02614 Glucuronate isomerase JCP88_RS06965 PF00933 Glycosyl hydrolase family 3 N terminal domain JCP88_RS06970 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JCP88_RS06970 PF00703 Glycosyl hydrolases family 2 JCP88_RS06970 PF02837 Glycosyl hydrolases family 2, sugar binding domain JCP88_RS06990 PF14659 Phage integrase, N-terminal SAM-like domain JCP88_RS06990 PF00589 Phage integrase family JCP88_RS06995 PF00589 Phage integrase family JCP88_RS06995 PF02899 Phage integrase, N-terminal SAM-like domain JCP88_RS07025 PF00106 short chain dehydrogenase JCP88_RS07030 PF05043 Mga helix-turn-helix domain JCP88_RS07030 PF00874 PRD domain JCP88_RS07030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS07030 PF08279 HTH domain JCP88_RS07040 PF03608 PTS system enzyme II sorbitol-specific factor JCP88_RS07045 PF07663 Sorbitol phosphotransferase enzyme II C-terminus JCP88_RS07045 PF03612 Sorbitol phosphotransferase enzyme II N-terminus JCP88_RS07060 PF00923 Transaldolase/Fructose-6-phosphate aldolase JCP88_RS07065 PF13145 PPIC-type PPIASE domain JCP88_RS07090 PF03960 ArsC family JCP88_RS07100 PF12146 Serine aminopeptidase, S33 JCP88_RS07105 PF00135 Carboxylesterase family JCP88_RS07115 PF01380 SIS domain JCP88_RS07115 PF01418 Helix-turn-helix domain, rpiR family JCP88_RS07115 PF02685 Glucokinase JCP88_RS07120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JCP88_RS07120 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JCP88_RS07125 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JCP88_RS07125 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JCP88_RS07135 PF00465 Iron-containing alcohol dehydrogenase JCP88_RS07145 PF03613 PTS system mannose/fructose/sorbose family IID component JCP88_RS07150 PF03830 PTS system sorbose subfamily IIB component JCP88_RS07170 PF03786 D-mannonate dehydratase (UxuA) JCP88_RS07175 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS07190 PF00313 'Cold-shock' DNA-binding domain JCP88_RS07205 PF01381 Helix-turn-helix JCP88_RS07235 PF01501 Glycosyl transferase family 8 JCP88_RS07240 PF01501 Glycosyl transferase family 8 JCP88_RS07270 PF03780 Asp23 family, cell envelope-related function JCP88_RS07275 PF04226 Transglycosylase associated protein JCP88_RS07290 PF13443 Cro/C1-type HTH DNA-binding domain JCP88_RS07295 PF11188 Protein of unknown function (DUF2975) JCP88_RS07315 PF03780 Asp23 family, cell envelope-related function JCP88_RS07320 PF04226 Transglycosylase associated protein JCP88_RS07335 PF00909 Ammonium Transporter Family JCP88_RS07345 PF00186 Dihydrofolate reductase JCP88_RS07355 PF01872 RibD C-terminal domain JCP88_RS07360 PF01610 Transposase JCP88_RS07360 PF13683 Integrase core domain JCP88_RS07375 PF18106 Rolling Circle replication initiation protein N-terminal domain JCP88_RS07375 PF02486 Replication initiation factor JCP88_RS07395 PF04960 Glutaminase JCP88_RS07410 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JCP88_RS07410 PF02779 Transketolase, pyrimidine binding domain JCP88_RS07410 PF02780 Transketolase, C-terminal domain JCP88_RS07420 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase JCP88_RS07425 PF01613 Flavin reductase like domain JCP88_RS07435 PF01098 Cell cycle protein JCP88_RS07440 PF03816 Cell envelope-related transcriptional attenuator domain JCP88_RS07445 PF05223 NTF2-like N-terminal transpeptidase domain JCP88_RS07445 PF03717 Penicillin-binding Protein dimerisation domain JCP88_RS07445 PF00905 Penicillin binding protein transpeptidase domain JCP88_RS07450 PF00999 Sodium/hydrogen exchanger family JCP88_RS07465 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS07465 PF13192 Thioredoxin domain JCP88_RS07470 PF00578 AhpC/TSA family JCP88_RS07480 PF08125 Mannitol dehydrogenase C-terminal domain JCP88_RS07480 PF01232 Mannitol dehydrogenase Rossmann domain JCP88_RS07485 PF03786 D-mannonate dehydratase (UxuA) JCP88_RS07500 PF01594 AI-2E family transporter JCP88_RS07505 PF01047 MarR family JCP88_RS07510 PF02566 OsmC-like protein JCP88_RS07520 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JCP88_RS07520 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JCP88_RS07525 PF02903 Alpha amylase, N-terminal ig-like domain JCP88_RS07525 PF00128 Alpha amylase, catalytic domain JCP88_RS07530 PF13416 Bacterial extracellular solute-binding protein JCP88_RS07535 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS07540 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS07565 PF01180 Dihydroorotate dehydrogenase JCP88_RS07570 PF01425 Amidase JCP88_RS07575 PF00497 Bacterial extracellular solute-binding proteins, family 3 JCP88_RS07580 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS07600 PF00625 Guanylate kinase JCP88_RS07605 PF01773 Na+ dependent nucleoside transporter N-terminus JCP88_RS07605 PF07662 Na+ dependent nucleoside transporter C-terminus JCP88_RS07610 PF08903 Domain of unknown function (DUF1846) JCP88_RS07640 PF16916 Dimerisation domain of Zinc Transporter JCP88_RS07640 PF01545 Cation efflux family JCP88_RS07655 PF01943 Polysaccharide biosynthesis protein JCP88_RS07655 PF14667 Polysaccharide biosynthesis C-terminal domain JCP88_RS07660 PF02645 Uncharacterised protein, DegV family COG1307 JCP88_RS07675 PF16657 Maltogenic Amylase, C-terminal domain JCP88_RS07675 PF00128 Alpha amylase, catalytic domain JCP88_RS07680 PF04260 Protein of unknown function (DUF436) JCP88_RS07690 PF08543 Phosphomethylpyrimidine kinase JCP88_RS07715 PF09557 Domain of unknown function (DUF2382) JCP88_RS07715 PF11181 Heat induced stress protein YflT JCP88_RS07720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS07720 PF00512 His Kinase A (phospho-acceptor) domain JCP88_RS07725 PF00072 Response regulator receiver domain JCP88_RS07725 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS07735 PF00005 ABC transporter JCP88_RS07775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JCP88_RS07775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JCP88_RS07785 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS07785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS07785 PF08279 HTH domain JCP88_RS07785 PF00874 PRD domain JCP88_RS07785 PF05043 Mga helix-turn-helix domain JCP88_RS07795 PF03611 PTS system sugar-specific permease component JCP88_RS07810 PF02311 AraC-like ligand binding domain JCP88_RS07810 PF12833 Helix-turn-helix domain JCP88_RS07815 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JCP88_RS07815 PF00056 lactate/malate dehydrogenase, NAD binding domain JCP88_RS07835 PF01131 DNA topoisomerase JCP88_RS07835 PF01751 Toprim domain JCP88_RS07845 PF03816 Cell envelope-related transcriptional attenuator domain JCP88_RS07850 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JCP88_RS07850 PF08501 Shikimate dehydrogenase substrate binding domain JCP88_RS07855 PF00005 ABC transporter JCP88_RS07860 PF02653 Branched-chain amino acid transport system / permease component JCP88_RS07875 PF05670 NFACT protein RNA binding domain JCP88_RS07880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JCP88_RS07880 PF03466 LysR substrate binding domain JCP88_RS07905 PF01180 Dihydroorotate dehydrogenase JCP88_RS07910 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JCP88_RS07910 PF00970 Oxidoreductase FAD-binding domain JCP88_RS07915 PF02142 MGS-like domain JCP88_RS07915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JCP88_RS07915 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JCP88_RS07920 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JCP88_RS07920 PF00117 Glutamine amidotransferase class-I JCP88_RS07925 PF01979 Amidohydrolase family JCP88_RS07930 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JCP88_RS07930 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JCP88_RS07935 PF00860 Permease family JCP88_RS07940 PF00156 Phosphoribosyl transferase domain JCP88_RS07945 PF00849 RNA pseudouridylate synthase JCP88_RS07945 PF01479 S4 domain JCP88_RS07950 PF01252 Signal peptidase (SPase) II JCP88_RS07965 PF01268 Formate--tetrahydrofolate ligase JCP88_RS07970 PF00313 'Cold-shock' DNA-binding domain JCP88_RS07975 PF17255 EbsA-like protein JCP88_RS07980 PF13456 Reverse transcriptase-like JCP88_RS07990 PF12822 ECF transporter, substrate-specific component JCP88_RS07995 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JCP88_RS07995 PF02272 DHHA1 domain JCP88_RS07995 PF01411 tRNA synthetases class II (A) JCP88_RS08000 PF13673 Acetyltransferase (GNAT) domain JCP88_RS08005 PF00270 DEAD/DEAH box helicase JCP88_RS08005 PF00271 Helicase conserved C-terminal domain JCP88_RS08020 PF13520 Amino acid permease JCP88_RS08025 PF01370 NAD dependent epimerase/dehydratase family JCP88_RS08030 PF00155 Aminotransferase class I and II JCP88_RS08035 PF01966 HD domain JCP88_RS08040 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JCP88_RS08045 PF02926 THUMP domain JCP88_RS08045 PF01170 Putative RNA methylase family UPF0020 JCP88_RS08055 PF05103 DivIVA protein JCP88_RS08060 PF06908 YspA SLOG family JCP88_RS08065 PF03838 Recombination protein U JCP88_RS08070 PF00912 Transglycosylase JCP88_RS08070 PF00905 Penicillin binding protein transpeptidase domain JCP88_RS08080 PF00730 HhH-GPD superfamily base excision DNA repair protein JCP88_RS08080 PF00633 Helix-hairpin-helix motif JCP88_RS08080 PF10576 Iron-sulfur binding domain of endonuclease III JCP88_RS08085 PF07261 Replication initiation and membrane attachment JCP88_RS08090 PF07690 Major Facilitator Superfamily JCP88_RS08095 PF01047 MarR family JCP88_RS08105 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS08105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS08110 PF01475 Ferric uptake regulator family JCP88_RS08115 PF00291 Pyridoxal-phosphate dependent enzyme JCP88_RS08120 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JCP88_RS08120 PF01476 LysM domain JCP88_RS08130 PF02780 Transketolase, C-terminal domain JCP88_RS08130 PF02779 Transketolase, pyrimidine binding domain JCP88_RS08130 PF00456 Transketolase, thiamine diphosphate binding domain JCP88_RS08135 PF05979 Bacterial protein of unknown function (DUF896) JCP88_RS08140 PF00717 Peptidase S24-like JCP88_RS08140 PF01726 LexA DNA binding domain JCP88_RS08150 PF00156 Phosphoribosyl transferase domain JCP88_RS08155 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JCP88_RS08155 PF17768 RecJ OB domain JCP88_RS08155 PF02272 DHHA1 domain JCP88_RS08155 PF01368 DHH family JCP88_RS08160 PF06305 Lipopolysaccharide assembly protein A domain JCP88_RS08165 PF00106 short chain dehydrogenase JCP88_RS08170 PF12706 Beta-lactamase superfamily domain JCP88_RS08170 PF00753 Metallo-beta-lactamase superfamily JCP88_RS08180 PF01926 50S ribosome-binding GTPase JCP88_RS08180 PF09269 Domain of unknown function (DUF1967) JCP88_RS08180 PF01018 GTP1/OBG JCP88_RS08185 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JCP88_RS08185 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JCP88_RS08205 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JCP88_RS08210 PF07977 FabA-like domain JCP88_RS08220 PF01063 Amino-transferase class IV JCP88_RS08225 PF00924 Mechanosensitive ion channel JCP88_RS08240 PF01138 3' exoribonuclease family, domain 1 JCP88_RS08240 PF03725 3' exoribonuclease family, domain 2 JCP88_RS08245 PF01177 Asp/Glu/Hydantoin racemase JCP88_RS08250 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS08255 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS08260 PF00497 Bacterial extracellular solute-binding proteins, family 3 JCP88_RS08265 PF00005 ABC transporter JCP88_RS08270 PF00579 tRNA synthetases class I (W and Y) JCP88_RS08275 PF03483 B3/4 domain JCP88_RS08275 PF03147 Ferredoxin-fold anticodon binding domain JCP88_RS08275 PF01588 Putative tRNA binding domain JCP88_RS08275 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JCP88_RS08275 PF03484 tRNA synthetase B5 domain JCP88_RS08280 PF01409 tRNA synthetases class II core domain (F) JCP88_RS08280 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JCP88_RS08285 PF01638 HxlR-like helix-turn-helix JCP88_RS08290 PF13361 UvrD-like helicase C-terminal domain JCP88_RS08290 PF00580 UvrD/REP helicase N-terminal domain JCP88_RS08290 PF12705 PD-(D/E)XK nuclease superfamily JCP88_RS08295 PF12705 PD-(D/E)XK nuclease superfamily JCP88_RS08305 PF00854 POT family JCP88_RS08325 PF13529 Peptidase_C39 like family JCP88_RS08380 PF01476 LysM domain JCP88_RS08380 PF05257 CHAP domain JCP88_RS08385 PF01610 Transposase JCP88_RS08385 PF13683 Integrase core domain JCP88_RS08400 PF01883 Iron-sulfur cluster assembly protein JCP88_RS08405 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JCP88_RS08405 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JCP88_RS08410 PF04461 Protein of unknown function (DUF520) JCP88_RS08420 PF00753 Metallo-beta-lactamase superfamily JCP88_RS08430 PF02673 Bacitracin resistance protein BacA JCP88_RS08440 PF04284 Protein of unknown function (DUF441) JCP88_RS08450 PF01649 Ribosomal protein S20 JCP88_RS08455 PF06144 DNA polymerase III, delta subunit JCP88_RS08460 PF00753 Metallo-beta-lactamase superfamily JCP88_RS08460 PF03772 Competence protein JCP88_RS08460 PF13567 Domain of unknown function (DUF4131) JCP88_RS08465 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JCP88_RS08480 PF10531 SLBB domain JCP88_RS08485 PF13180 PDZ domain JCP88_RS08485 PF05362 Lon protease (S16) C-terminal proteolytic domain JCP88_RS08490 PF01467 Cytidylyltransferase-like JCP88_RS08500 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) JCP88_RS08515 PF00682 HMGL-like JCP88_RS08515 PF02436 Conserved carboxylase domain JCP88_RS08515 PF02785 Biotin carboxylase C-terminal domain JCP88_RS08515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JCP88_RS08515 PF00364 Biotin-requiring enzyme JCP88_RS08515 PF00289 Biotin carboxylase, N-terminal domain JCP88_RS08520 PF01098 Cell cycle protein JCP88_RS08525 PF07408 Protein of unknown function (DUF1507) JCP88_RS08530 PF00271 Helicase conserved C-terminal domain JCP88_RS08530 PF00570 HRDC domain JCP88_RS08530 PF00270 DEAD/DEAH box helicase JCP88_RS08530 PF16124 RecQ zinc-binding JCP88_RS08530 PF09382 RQC domain JCP88_RS08535 PF03144 Elongation factor Tu domain 2 JCP88_RS08535 PF14492 Elongation Factor G, domain II JCP88_RS08535 PF00679 Elongation factor G C-terminus JCP88_RS08535 PF00009 Elongation factor Tu GTP binding domain JCP88_RS08540 PF00459 Inositol monophosphatase family JCP88_RS08545 PF05256 Uncharacterised protein family (UPF0223) JCP88_RS08550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS08550 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS08555 PF00364 Biotin-requiring enzyme JCP88_RS08555 PF02817 e3 binding domain JCP88_RS08555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JCP88_RS08560 PF02779 Transketolase, pyrimidine binding domain JCP88_RS08560 PF02780 Transketolase, C-terminal domain JCP88_RS08565 PF00676 Dehydrogenase E1 component JCP88_RS08570 PF00155 Aminotransferase class I and II JCP88_RS08570 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS08575 PF00478 IMP dehydrogenase / GMP reductase domain JCP88_RS08580 PF02653 Branched-chain amino acid transport system / permease component JCP88_RS08585 PF00005 ABC transporter JCP88_RS08590 PF13407 Periplasmic binding protein domain JCP88_RS08600 PF02743 Cache domain JCP88_RS08600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS08600 PF00672 HAMP domain JCP88_RS08600 PF06580 Histidine kinase JCP88_RS08605 PF00072 Response regulator receiver domain JCP88_RS08605 PF04397 LytTr DNA-binding domain JCP88_RS08610 PF00248 Aldo/keto reductase family JCP88_RS08615 PF02844 Phosphoribosylglycinamide synthetase, N domain JCP88_RS08615 PF02843 Phosphoribosylglycinamide synthetase, C domain JCP88_RS08615 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JCP88_RS08620 PF02142 MGS-like domain JCP88_RS08620 PF01808 AICARFT/IMPCHase bienzyme JCP88_RS08625 PF00551 Formyl transferase JCP88_RS08630 PF02769 AIR synthase related protein, C-terminal domain JCP88_RS08630 PF00586 AIR synthase related protein, N-terminal domain JCP88_RS08635 PF13537 Glutamine amidotransferase domain JCP88_RS08635 PF00156 Phosphoribosyl transferase domain JCP88_RS08640 PF02769 AIR synthase related protein, C-terminal domain JCP88_RS08640 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JCP88_RS08640 PF00586 AIR synthase related protein, N-terminal domain JCP88_RS08650 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase JCP88_RS08655 PF01259 SAICAR synthetase JCP88_RS08665 PF10397 Adenylosuccinate lyase C-terminus JCP88_RS08665 PF00206 Lyase JCP88_RS08670 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JCP88_RS08670 PF02222 ATP-grasp domain JCP88_RS08675 PF00731 AIR carboxylase JCP88_RS08680 PF00860 Permease family JCP88_RS08685 PF00156 Phosphoribosyl transferase domain JCP88_RS08690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JCP88_RS08690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JCP88_RS08700 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS08705 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS08710 PF13416 Bacterial extracellular solute-binding protein JCP88_RS08720 PF01476 LysM domain JCP88_RS08720 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JCP88_RS08725 PF02557 D-alanyl-D-alanine carboxypeptidase JCP88_RS08735 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JCP88_RS08735 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JCP88_RS08750 PF01145 SPFH domain / Band 7 family JCP88_RS08750 PF15975 Flotillin JCP88_RS08760 PF17203 Single cache domain 3 JCP88_RS08760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS08760 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JCP88_RS08760 PF00989 PAS fold JCP88_RS08765 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JCP88_RS08765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS08765 PF00989 PAS fold JCP88_RS08765 PF17203 Single cache domain 3 JCP88_RS08770 PF00072 Response regulator receiver domain JCP88_RS08775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JCP88_RS08775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JCP88_RS08785 PF01979 Amidohydrolase family JCP88_RS08795 PF00155 Aminotransferase class I and II JCP88_RS08845 PF05257 CHAP domain JCP88_RS08845 PF01476 LysM domain JCP88_RS08850 PF01026 TatD related DNase JCP88_RS08855 PF00005 ABC transporter JCP88_RS08865 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS08870 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS08870 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS08870 PF00403 Heavy-metal-associated domain JCP88_RS08875 PF00005 ABC transporter JCP88_RS08875 PF00571 CBS domain JCP88_RS08880 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JCP88_RS08890 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JCP88_RS08890 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JCP88_RS08900 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS08905 PF00326 Prolyl oligopeptidase family JCP88_RS08915 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JCP88_RS08935 PF02833 DHHA2 domain JCP88_RS08935 PF01368 DHH family JCP88_RS08940 PF04055 Radical SAM superfamily JCP88_RS08945 PF01228 Glycine radical JCP88_RS08945 PF02901 Pyruvate formate lyase-like JCP88_RS08950 PF00521 DNA gyrase/topoisomerase IV, subunit A JCP88_RS08950 PF03989 DNA gyrase C-terminal domain, beta-propeller JCP88_RS08955 PF01751 Toprim domain JCP88_RS08955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS08955 PF00986 DNA gyrase B subunit, carboxyl terminus JCP88_RS08955 PF00204 DNA gyrase B JCP88_RS08960 PF13380 CoA binding domain JCP88_RS08965 PF02660 Glycerol-3-phosphate acyltransferase JCP88_RS08975 PF13683 Integrase core domain JCP88_RS08975 PF01610 Transposase JCP88_RS08985 PF06018 CodY GAF-like domain JCP88_RS08985 PF08222 CodY helix-turn-helix domain JCP88_RS08990 PF10431 C-terminal, D2-small domain, of ClpB protein JCP88_RS08990 PF07724 AAA domain (Cdc48 subfamily) JCP88_RS08990 PF00004 ATPase family associated with various cellular activities (AAA) JCP88_RS08995 PF00227 Proteasome subunit JCP88_RS09000 PF02899 Phage integrase, N-terminal SAM-like domain JCP88_RS09000 PF00589 Phage integrase family JCP88_RS09005 PF01134 Glucose inhibited division protein A JCP88_RS09010 PF01131 DNA topoisomerase JCP88_RS09010 PF01751 Toprim domain JCP88_RS09010 PF01396 Topoisomerase DNA binding C4 zinc finger JCP88_RS09015 PF02481 DNA recombination-mediator protein A JCP88_RS09015 PF18255 DNA processing protein A sterile alpha motif domain JCP88_RS09020 PF01351 Ribonuclease HII JCP88_RS09025 PF01926 50S ribosome-binding GTPase JCP88_RS09040 PF10502 Signal peptidase, peptidase S26 JCP88_RS09045 PF06855 YozE SAM-like fold JCP88_RS09050 PF01625 Peptide methionine sulfoxide reductase JCP88_RS09055 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) JCP88_RS09060 PF13472 GDSL-like Lipase/Acylhydrolase family JCP88_RS09065 PF02645 Uncharacterised protein, DegV family COG1307 JCP88_RS09070 PF03006 Haemolysin-III related JCP88_RS09075 PF00186 Dihydrofolate reductase JCP88_RS09080 PF00303 Thymidylate synthase JCP88_RS09085 PF00005 ABC transporter JCP88_RS09085 PF16326 ABC transporter C-terminal domain JCP88_RS09085 PF12848 ABC transporter JCP88_RS09090 PF00999 Sodium/hydrogen exchanger family JCP88_RS09110 PF13735 tRNA nucleotidyltransferase domain 2 putative JCP88_RS09110 PF01743 Poly A polymerase head domain JCP88_RS09110 PF12627 Probable RNA and SrmB- binding site of polymerase A JCP88_RS09115 PF03819 MazG nucleotide pyrophosphohydrolase domain JCP88_RS09120 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JCP88_RS09120 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JCP88_RS09125 PF08864 UPF0302 domain JCP88_RS09125 PF08858 IDEAL domain JCP88_RS09145 PF00216 Bacterial DNA-binding protein JCP88_RS09150 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JCP88_RS09150 PF01926 50S ribosome-binding GTPase JCP88_RS09155 PF00575 S1 RNA binding domain JCP88_RS09160 PF02224 Cytidylate kinase JCP88_RS09170 PF00271 Helicase conserved C-terminal domain JCP88_RS09170 PF00270 DEAD/DEAH box helicase JCP88_RS09195 PF01546 Peptidase family M20/M25/M40 JCP88_RS09200 PF03606 C4-dicarboxylate anaerobic carrier JCP88_RS09205 PF12822 ECF transporter, substrate-specific component JCP88_RS09210 PF00849 RNA pseudouridylate synthase JCP88_RS09210 PF01479 S4 domain JCP88_RS09215 PF04079 Segregation and condensation complex subunit ScpB JCP88_RS09220 PF02616 Segregation and condensation protein ScpA JCP88_RS09230 PF00589 Phage integrase family JCP88_RS09230 PF02899 Phage integrase, N-terminal SAM-like domain JCP88_RS09240 PF01475 Ferric uptake regulator family JCP88_RS09245 PF17783 CvfB-like winged helix domain JCP88_RS09245 PF13509 S1 domain JCP88_RS09250 PF18041 MapZ extracellular domain 1 JCP88_RS09250 PF18708 MapZ extracellular C-terminal domain 2 JCP88_RS09255 PF00140 Sigma-70 factor, region 1.2 JCP88_RS09255 PF04539 Sigma-70 region 3 JCP88_RS09255 PF04545 Sigma-70, region 4 JCP88_RS09255 PF03979 Sigma-70 factor, region 1.1 JCP88_RS09255 PF04542 Sigma-70 region 2 JCP88_RS09260 PF08275 DNA primase catalytic core, N-terminal domain JCP88_RS09260 PF10410 DnaB-helicase binding domain of primase JCP88_RS09260 PF01807 CHC2 zinc finger JCP88_RS09280 PF00561 alpha/beta hydrolase fold JCP88_RS09285 PF09924 Uncharacterised conserved protein (DUF2156) JCP88_RS09285 PF03706 Lysylphosphatidylglycerol synthase TM region JCP88_RS09290 PF00009 Elongation factor Tu GTP binding domain JCP88_RS09290 PF03143 Elongation factor Tu C-terminal domain JCP88_RS09290 PF03144 Elongation factor Tu domain 2 JCP88_RS09305 PF00248 Aldo/keto reductase family JCP88_RS09320 PF02803 Thiolase, C-terminal domain JCP88_RS09320 PF00108 Thiolase, N-terminal domain JCP88_RS09325 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal JCP88_RS09325 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal JCP88_RS09335 PF00689 Cation transporting ATPase, C-terminus JCP88_RS09335 PF00690 Cation transporter/ATPase, N-terminus JCP88_RS09340 PF13091 PLD-like domain JCP88_RS09340 PF13396 Phospholipase_D-nuclease N-terminal JCP88_RS09345 PF08543 Phosphomethylpyrimidine kinase JCP88_RS09355 PF03960 ArsC family JCP88_RS09365 PF03551 Transcriptional regulator PadR-like family JCP88_RS09375 PF00582 Universal stress protein family JCP88_RS09380 PF00232 Glycosyl hydrolase family 1 JCP88_RS09385 PF02378 Phosphotransferase system, EIIC JCP88_RS09390 PF07702 UTRA domain JCP88_RS09390 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS09395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JCP88_RS09400 PF01738 Dienelactone hydrolase family JCP88_RS09415 PF03611 PTS system sugar-specific permease component JCP88_RS09435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS09435 PF08279 HTH domain JCP88_RS09435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS09435 PF00874 PRD domain JCP88_RS09435 PF05043 Mga helix-turn-helix domain JCP88_RS09455 PF00583 Acetyltransferase (GNAT) family JCP88_RS09460 PF00596 Class II Aldolase and Adducin N-terminal domain JCP88_RS09465 PF01261 Xylose isomerase-like TIM barrel JCP88_RS09470 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JCP88_RS09480 PF03611 PTS system sugar-specific permease component JCP88_RS09485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS09495 PF08220 DeoR-like helix-turn-helix domain JCP88_RS09495 PF00455 DeoR C terminal sensor domain JCP88_RS09515 PF02378 Phosphotransferase system, EIIC JCP88_RS09520 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS09520 PF00367 phosphotransferase system, EIIB JCP88_RS09520 PF02378 Phosphotransferase system, EIIC JCP88_RS09525 PF02056 Family 4 glycosyl hydrolase JCP88_RS09525 PF11975 Family 4 glycosyl hydrolase C-terminal domain JCP88_RS09530 PF02378 Phosphotransferase system, EIIC JCP88_RS09530 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS09530 PF00367 phosphotransferase system, EIIB JCP88_RS09535 PF04794 YdjC-like protein JCP88_RS09540 PF03123 CAT RNA binding domain JCP88_RS09540 PF00874 PRD domain JCP88_RS09640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS09640 PF00512 His Kinase A (phospho-acceptor) domain JCP88_RS09640 PF18719 ArlS sensor domain JCP88_RS09645 PF00072 Response regulator receiver domain JCP88_RS09645 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS09650 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JCP88_RS09650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JCP88_RS09660 PF01783 Ribosomal L32p protein family JCP88_RS09670 PF03466 LysR substrate binding domain JCP88_RS09670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JCP88_RS09675 PF02887 Pyruvate kinase, alpha/beta domain JCP88_RS09675 PF00224 Pyruvate kinase, barrel domain JCP88_RS09675 PF00391 PEP-utilising enzyme, mobile domain JCP88_RS09680 PF00365 Phosphofructokinase JCP88_RS09685 PF02811 PHP domain JCP88_RS09685 PF01336 OB-fold nucleic acid binding domain JCP88_RS09685 PF07733 Bacterial DNA polymerase III alpha NTPase domain JCP88_RS09685 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JCP88_RS09685 PF14579 Helix-hairpin-helix motif JCP88_RS09695 PF07690 Major Facilitator Superfamily JCP88_RS09700 PF00860 Permease family JCP88_RS09710 PF03717 Penicillin-binding Protein dimerisation domain JCP88_RS09710 PF00905 Penicillin binding protein transpeptidase domain JCP88_RS09715 PF01380 SIS domain JCP88_RS09715 PF01418 Helix-turn-helix domain, rpiR family JCP88_RS09720 PF02824 TGS domain JCP88_RS09720 PF03129 Anticodon binding domain JCP88_RS09720 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JCP88_RS09720 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JCP88_RS09725 PF01361 Tautomerase enzyme JCP88_RS09730 PF00403 Heavy-metal-associated domain JCP88_RS09735 PF13538 UvrD-like helicase C-terminal domain JCP88_RS09745 PF01709 Transcriptional regulator JCP88_RS09750 PF05636 HIGH Nucleotidyl Transferase JCP88_RS09755 PF13649 Methyltransferase domain JCP88_RS09765 PF01966 HD domain JCP88_RS09770 PF01467 Cytidylyltransferase-like JCP88_RS09775 PF01985 CRS1 / YhbY (CRM) domain JCP88_RS09780 PF01926 50S ribosome-binding GTPase JCP88_RS09790 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JCP88_RS09795 PF01039 Carboxyl transferase domain JCP88_RS09800 PF02785 Biotin carboxylase C-terminal domain JCP88_RS09800 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JCP88_RS09800 PF00289 Biotin carboxylase, N-terminal domain JCP88_RS09805 PF07977 FabA-like domain JCP88_RS09810 PF00364 Biotin-requiring enzyme JCP88_RS09815 PF00109 Beta-ketoacyl synthase, N-terminal domain JCP88_RS09815 PF02801 Beta-ketoacyl synthase, C-terminal domain JCP88_RS09825 PF00698 Acyl transferase domain JCP88_RS09830 PF00550 Phosphopantetheine attachment site JCP88_RS09835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JCP88_RS09835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JCP88_RS09840 PF01047 MarR family JCP88_RS09845 PF08459 UvrC Helix-hairpin-helix N-terminal JCP88_RS09845 PF02151 UvrB/uvrC motif JCP88_RS09845 PF01541 GIY-YIG catalytic domain JCP88_RS09850 PF08796 Protein of unknown function (DUF1797) JCP88_RS09855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JCP88_RS09855 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JCP88_RS09860 PF13439 Glycosyltransferase Family 4 JCP88_RS09860 PF00534 Glycosyl transferases group 1 JCP88_RS09865 PF13439 Glycosyltransferase Family 4 JCP88_RS09865 PF00534 Glycosyl transferases group 1 JCP88_RS09875 PF02896 PEP-utilising enzyme, TIM barrel domain JCP88_RS09875 PF00391 PEP-utilising enzyme, mobile domain JCP88_RS09875 PF05524 PEP-utilising enzyme, N-terminal JCP88_RS09880 PF00381 PTS HPr component phosphorylation site JCP88_RS09885 PF10431 C-terminal, D2-small domain, of ClpB protein JCP88_RS09885 PF07724 AAA domain (Cdc48 subfamily) JCP88_RS09885 PF00004 ATPase family associated with various cellular activities (AAA) JCP88_RS09885 PF17871 AAA lid domain JCP88_RS09905 PF16658 Class II release factor RF3, C-terminal domain JCP88_RS09905 PF03144 Elongation factor Tu domain 2 JCP88_RS09905 PF00009 Elongation factor Tu GTP binding domain JCP88_RS09910 PF00571 CBS domain JCP88_RS09910 PF01595 Cyclin M transmembrane N-terminal domain JCP88_RS09910 PF03471 Transporter associated domain JCP88_RS09915 PF01594 AI-2E family transporter JCP88_RS09920 PF00583 Acetyltransferase (GNAT) family JCP88_RS09925 PF04167 Protein of unknown function (DUF402) JCP88_RS09930 PF14815 NUDIX domain JCP88_RS09930 PF00730 HhH-GPD superfamily base excision DNA repair protein JCP88_RS09935 PF02631 RecX family JCP88_RS09940 PF05958 tRNA (Uracil-5-)-methyltransferase JCP88_RS09940 PF01938 TRAM domain JCP88_RS09945 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JCP88_RS09950 PF03073 TspO/MBR family JCP88_RS09955 PF03816 Cell envelope-related transcriptional attenuator domain JCP88_RS09965 PF00313 'Cold-shock' DNA-binding domain JCP88_RS09970 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JCP88_RS09970 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JCP88_RS09975 PF04138 GtrA-like protein JCP88_RS09980 PF01545 Cation efflux family JCP88_RS09990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JCP88_RS10005 PF02080 TrkA-C domain JCP88_RS10005 PF02254 TrkA-N domain JCP88_RS10010 PF00196 Bacterial regulatory proteins, luxR family JCP88_RS10010 PF00072 Response regulator receiver domain JCP88_RS10015 PF00672 HAMP domain JCP88_RS10015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS10015 PF07730 Histidine kinase JCP88_RS10025 PF03449 Transcription elongation factor, N-terminal JCP88_RS10025 PF01272 Transcription elongation factor, GreA/GreB, C-term JCP88_RS10030 PF02618 YceG-like family JCP88_RS10045 PF00872 Transposase, Mutator family JCP88_RS10085 PF13683 Integrase core domain JCP88_RS10085 PF01610 Transposase JCP88_RS10090 PF01370 NAD dependent epimerase/dehydratase family JCP88_RS10095 PF02348 Cytidylyltransferase JCP88_RS10110 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JCP88_RS10120 PF02350 UDP-N-acetylglucosamine 2-epimerase JCP88_RS10125 PF03102 NeuB family JCP88_RS10125 PF08666 SAF domain JCP88_RS10130 PF02719 Polysaccharide biosynthesis protein JCP88_RS10155 PF00534 Glycosyl transferases group 1 JCP88_RS10155 PF13439 Glycosyltransferase Family 4 JCP88_RS10160 PF00535 Glycosyl transferase family 2 JCP88_RS10165 PF02397 Bacterial sugar transferase JCP88_RS10180 PF00535 Glycosyl transferase family 2 JCP88_RS10185 PF00398 Ribosomal RNA adenine dimethylase JCP88_RS10190 PF00005 ABC transporter JCP88_RS10190 PF08239 Bacterial SH3 domain JCP88_RS10195 PF01061 ABC-2 type transporter JCP88_RS10210 PF04321 RmlD substrate binding domain JCP88_RS10215 PF16363 GDP-mannose 4,6 dehydratase JCP88_RS10220 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JCP88_RS10225 PF00483 Nucleotidyl transferase JCP88_RS10230 PF00535 Glycosyl transferase family 2 JCP88_RS10245 PF00953 Glycosyl transferase family 4 JCP88_RS10250 PF03631 Virulence factor BrkB JCP88_RS10255 PF00557 Metallopeptidase family M24 JCP88_RS10260 PF00258 Flavodoxin JCP88_RS10270 PF02073 Thermophilic metalloprotease (M29) JCP88_RS10275 PF00872 Transposase, Mutator family JCP88_RS10310 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JCP88_RS10310 PF01348 Type II intron maturase JCP88_RS10320 PF02486 Replication initiation factor JCP88_RS10320 PF18106 Rolling Circle replication initiation protein N-terminal domain JCP88_RS10350 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JCP88_RS10385 PF01245 Ribosomal protein L19 JCP88_RS10390 PF01746 tRNA (Guanine-1)-methyltransferase JCP88_RS10395 PF01782 RimM N-terminal domain JCP88_RS10395 PF05239 PRC-barrel domain JCP88_RS10410 PF00886 Ribosomal protein S16 JCP88_RS10415 PF03358 NADPH-dependent FMN reductase JCP88_RS10420 PF01872 RibD C-terminal domain JCP88_RS10425 PF13673 Acetyltransferase (GNAT) domain JCP88_RS10425 PF13302 Acetyltransferase (GNAT) domain JCP88_RS10425 PF03352 Methyladenine glycosylase JCP88_RS10425 PF00117 Glutamine amidotransferase class-I JCP88_RS10425 PF00958 GMP synthase C terminal domain JCP88_RS10430 PF00448 SRP54-type protein, GTPase domain JCP88_RS10430 PF02881 SRP54-type protein, helical bundle domain JCP88_RS10430 PF02978 Signal peptide binding domain JCP88_RS10435 PF04297 Putative helix-turn-helix protein, YlxM / p13 like JCP88_RS10445 PF00072 Response regulator receiver domain JCP88_RS10445 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS10450 PF16736 Single Cache-like JCP88_RS10450 PF00989 PAS fold JCP88_RS10450 PF00512 His Kinase A (phospho-acceptor) domain JCP88_RS10450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS10460 PF13683 Integrase core domain JCP88_RS10460 PF01610 Transposase JCP88_RS10465 PF12849 PBP superfamily domain JCP88_RS10490 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family JCP88_RS10550 PF07726 ATPase family associated with various cellular activities (AAA) JCP88_RS10550 PF17863 AAA lid domain JCP88_RS10575 PF00403 Heavy-metal-associated domain JCP88_RS10580 PF00403 Heavy-metal-associated domain JCP88_RS10585 PF03965 Penicillinase repressor JCP88_RS10595 PF13520 Amino acid permease JCP88_RS10600 PF00403 Heavy-metal-associated domain JCP88_RS10615 PF13472 GDSL-like Lipase/Acylhydrolase family JCP88_RS10620 PF01336 OB-fold nucleic acid binding domain JCP88_RS10620 PF00152 tRNA synthetases class II (D, K and N) JCP88_RS10625 PF00155 Aminotransferase class I and II JCP88_RS10635 PF13307 Helicase C-terminal domain JCP88_RS10635 PF00929 Exonuclease JCP88_RS10635 PF04851 Type III restriction enzyme, res subunit JCP88_RS10640 PF00313 'Cold-shock' DNA-binding domain JCP88_RS10660 PF00768 D-alanyl-D-alanine carboxypeptidase JCP88_RS10660 PF07943 Penicillin-binding protein 5, C-terminal domain JCP88_RS10675 PF00654 Voltage gated chloride channel JCP88_RS10700 PF00588 SpoU rRNA Methylase family JCP88_RS10700 PF08032 RNA 2'-O ribose methyltransferase substrate binding JCP88_RS10705 PF00708 Acylphosphatase JCP88_RS10715 PF02096 60Kd inner membrane protein JCP88_RS10740 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JCP88_RS10740 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JCP88_RS10740 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JCP88_RS10740 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JCP88_RS10775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JCP88_RS10805 PF13580 SIS domain JCP88_RS10815 PF00288 GHMP kinases N terminal domain JCP88_RS10815 PF08544 GHMP kinases C terminal JCP88_RS10825 PF01050 Mannose-6-phosphate isomerase JCP88_RS10825 PF00483 Nucleotidyl transferase JCP88_RS10830 PF02397 Bacterial sugar transferase JCP88_RS10855 PF13614 AAA domain JCP88_RS10860 PF02706 Chain length determinant protein JCP88_RS10860 PF13807 G-rich domain on putative tyrosine kinase JCP88_RS10865 PF03816 Cell envelope-related transcriptional attenuator domain JCP88_RS10890 PF05746 DALR anticodon binding domain JCP88_RS10890 PF02092 Glycyl-tRNA synthetase beta subunit JCP88_RS10895 PF02091 Glycyl-tRNA synthetase alpha subunit JCP88_RS10900 PF11967 Recombination protein O N terminal JCP88_RS10900 PF02565 Recombination protein O C terminal JCP88_RS10905 PF07650 KH domain JCP88_RS10905 PF01926 50S ribosome-binding GTPase JCP88_RS10910 PF01219 Prokaryotic diacylglycerol kinase JCP88_RS10915 PF02130 Uncharacterized protein family UPF0054 JCP88_RS10920 PF07698 7TM receptor with intracellular HD hydrolase JCP88_RS10920 PF07697 7TM-HD extracellular JCP88_RS10920 PF01966 HD domain JCP88_RS10925 PF02562 PhoH-like protein JCP88_RS10930 PF05525 Branched-chain amino acid transport protein JCP88_RS10940 PF01610 Transposase JCP88_RS10940 PF13683 Integrase core domain JCP88_RS10945 PF09424 Yqey-like protein JCP88_RS10950 PF01165 Ribosomal protein S21 JCP88_RS10955 PF01475 Ferric uptake regulator family JCP88_RS10960 PF03618 Kinase/pyrophosphorylase JCP88_RS10965 PF01022 Bacterial regulatory protein, arsR family JCP88_RS10970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JCP88_RS10970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JCP88_RS10970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JCP88_RS10970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JCP88_RS10975 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS10980 PF00232 Glycosyl hydrolase family 1 JCP88_RS10985 PF11975 Family 4 glycosyl hydrolase C-terminal domain JCP88_RS10985 PF02056 Family 4 glycosyl hydrolase JCP88_RS10995 PF00367 phosphotransferase system, EIIB JCP88_RS10995 PF02378 Phosphotransferase system, EIIC JCP88_RS10995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS11000 PF03123 CAT RNA binding domain JCP88_RS11000 PF00874 PRD domain JCP88_RS11005 PF00664 ABC transporter transmembrane region JCP88_RS11005 PF00005 ABC transporter JCP88_RS11010 PF00664 ABC transporter transmembrane region JCP88_RS11010 PF00005 ABC transporter JCP88_RS11015 PF03672 Uncharacterised protein family (UPF0154) JCP88_RS11020 PF01566 Natural resistance-associated macrophage protein JCP88_RS11030 PF01261 Xylose isomerase-like TIM barrel JCP88_RS11035 PF00905 Penicillin binding protein transpeptidase domain JCP88_RS11035 PF00912 Transglycosylase JCP88_RS11040 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS11045 PF00557 Metallopeptidase family M24 JCP88_RS11045 PF01321 Creatinase/Prolidase N-terminal domain JCP88_RS11055 PF12732 YtxH-like protein JCP88_RS11065 PF00483 Nucleotidyl transferase JCP88_RS11070 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JCP88_RS11070 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JCP88_RS11075 PF01790 Prolipoprotein diacylglyceryl transferase JCP88_RS11080 PF02603 HPr Serine kinase N terminus JCP88_RS11080 PF07475 HPr Serine kinase C-terminal domain JCP88_RS11085 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV JCP88_RS11110 PF01895 PhoU domain JCP88_RS11115 PF00005 ABC transporter JCP88_RS11120 PF00005 ABC transporter JCP88_RS11125 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS11130 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS11135 PF12849 PBP superfamily domain JCP88_RS11140 PF13396 Phospholipase_D-nuclease N-terminal JCP88_RS11140 PF13091 PLD-like domain JCP88_RS11145 PF18075 FtsX extracellular domain JCP88_RS11145 PF02687 FtsX-like permease family JCP88_RS11150 PF00005 ABC transporter JCP88_RS11160 PF07516 SecA Wing and Scaffold domain JCP88_RS11160 PF02810 SEC-C motif JCP88_RS11160 PF01043 SecA preprotein cross-linking domain JCP88_RS11160 PF07517 SecA DEAD-like domain JCP88_RS11165 PF01610 Transposase JCP88_RS11165 PF13683 Integrase core domain JCP88_RS11170 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JCP88_RS11170 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JCP88_RS11180 PF04851 Type III restriction enzyme, res subunit JCP88_RS11180 PF00271 Helicase conserved C-terminal domain JCP88_RS11185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS11195 PF01205 Uncharacterized protein family UPF0029 JCP88_RS11195 PF09186 Domain of unknown function (DUF1949) JCP88_RS11200 PF07702 UTRA domain JCP88_RS11200 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS11225 PF00480 ROK family JCP88_RS11235 PF01809 Putative membrane protein insertion efficiency factor JCP88_RS11245 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JCP88_RS11260 PF01610 Transposase JCP88_RS11260 PF13683 Integrase core domain JCP88_RS11265 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JCP88_RS11265 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JCP88_RS11270 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JCP88_RS11270 PF02874 ATP synthase alpha/beta family, beta-barrel domain JCP88_RS11275 PF00231 ATP synthase JCP88_RS11280 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JCP88_RS11280 PF00306 ATP synthase alpha/beta chain, C terminal domain JCP88_RS11280 PF02874 ATP synthase alpha/beta family, beta-barrel domain JCP88_RS11285 PF00213 ATP synthase delta (OSCP) subunit JCP88_RS11290 PF00430 ATP synthase B/B' CF(0) JCP88_RS11295 PF00137 ATP synthase subunit C JCP88_RS11300 PF00119 ATP synthase A chain JCP88_RS11315 PF03840 Preprotein translocase SecG subunit JCP88_RS11320 PF14542 GCN5-related N-acetyl-transferase JCP88_RS11330 PF01156 Inosine-uridine preferring nucleoside hydrolase JCP88_RS11340 PF07687 Peptidase dimerisation domain JCP88_RS11340 PF01546 Peptidase family M20/M25/M40 JCP88_RS11345 PF03952 Enolase, N-terminal domain JCP88_RS11345 PF00113 Enolase, C-terminal TIM barrel domain JCP88_RS11350 PF00121 Triosephosphate isomerase JCP88_RS11355 PF00162 Phosphoglycerate kinase JCP88_RS11360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JCP88_RS11360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JCP88_RS11365 PF04198 Putative sugar-binding domain JCP88_RS11370 PF04552 Sigma-54, DNA binding domain JCP88_RS11370 PF04963 Sigma-54 factor, core binding domain JCP88_RS11370 PF00309 Sigma-54 factor, Activator interacting domain (AID) JCP88_RS11390 PF11738 Protein of unknown function (DUF3298) JCP88_RS11390 PF13739 Deacetylase PdaC JCP88_RS11395 PF04542 Sigma-70 region 2 JCP88_RS11395 PF08281 Sigma-70, region 4 JCP88_RS11405 PF05066 HB1, ASXL, restriction endonuclease HTH domain JCP88_RS11415 PF03099 Biotin/lipoate A/B protein ligase family JCP88_RS11420 PF01966 HD domain JCP88_RS11430 PF00293 NUDIX domain JCP88_RS11435 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JCP88_RS11445 PF02423 Ornithine cyclodeaminase/mu-crystallin family JCP88_RS11450 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS11450 PF00155 Aminotransferase class I and II JCP88_RS11455 PF02386 Cation transport protein JCP88_RS11460 PF01813 ATP synthase subunit D JCP88_RS11465 PF02874 ATP synthase alpha/beta family, beta-barrel domain JCP88_RS11465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JCP88_RS11470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JCP88_RS11470 PF16886 ATPsynthase alpha/beta subunit N-term extension JCP88_RS11470 PF02874 ATP synthase alpha/beta family, beta-barrel domain JCP88_RS11475 PF01990 ATP synthase (F/14-kDa) subunit JCP88_RS11480 PF01992 ATP synthase (C/AC39) subunit JCP88_RS11490 PF00137 ATP synthase subunit C JCP88_RS11495 PF01496 V-type ATPase 116kDa subunit family JCP88_RS11505 PF07722 Peptidase C26 JCP88_RS11510 PF06874 Firmicute fructose-1,6-bisphosphatase JCP88_RS11520 PF13732 Domain of unknown function (DUF4162) JCP88_RS11520 PF00005 ABC transporter JCP88_RS11525 PF02151 UvrB/uvrC motif JCP88_RS11525 PF08459 UvrC Helix-hairpin-helix N-terminal JCP88_RS11525 PF01541 GIY-YIG catalytic domain JCP88_RS11530 PF00085 Thioredoxin JCP88_RS11535 PF00488 MutS domain V JCP88_RS11535 PF01713 Smr domain JCP88_RS11550 PF01351 Ribonuclease HII JCP88_RS11550 PF11858 Domain of unknown function (DUF3378) JCP88_RS11555 PF01520 N-acetylmuramoyl-L-alanine amidase JCP88_RS11555 PF00395 S-layer homology domain JCP88_RS11560 PF00440 Bacterial regulatory proteins, tetR family JCP88_RS11565 PF00005 ABC transporter JCP88_RS11575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS11575 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS11605 PF01070 FMN-dependent dehydrogenase JCP88_RS11615 PF03949 Malic enzyme, NAD binding domain JCP88_RS11615 PF00390 Malic enzyme, N-terminal domain JCP88_RS11620 PF03390 2-hydroxycarboxylate transporter family JCP88_RS11635 PF06949 Protein of unknown function (DUF1292) JCP88_RS11640 PF03652 Holliday junction resolvase JCP88_RS11645 PF06135 IreB regulatory phosphoprotein JCP88_RS11675 PF00005 ABC transporter JCP88_RS11685 PF09323 Domain of unknown function (DUF1980) JCP88_RS11690 PF03773 Predicted permease JCP88_RS11695 PF00085 Thioredoxin JCP88_RS11700 PF02629 CoA binding domain JCP88_RS11700 PF06971 Putative DNA-binding protein N-terminus JCP88_RS11705 PF16326 ABC transporter C-terminal domain JCP88_RS11705 PF12848 ABC transporter JCP88_RS11705 PF00005 ABC transporter JCP88_RS11710 PF07470 Glycosyl Hydrolase Family 88 JCP88_RS11720 PF07470 Glycosyl Hydrolase Family 88 JCP88_RS11725 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS11730 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS11745 PF07883 Cupin domain JCP88_RS11745 PF12833 Helix-turn-helix domain JCP88_RS11750 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS11750 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS11770 PF01721 Class II bacteriocin JCP88_RS11775 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS11780 PF00571 CBS domain JCP88_RS11780 PF00005 ABC transporter JCP88_RS11785 PF07729 FCD domain JCP88_RS11785 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS11795 PF02421 Ferrous iron transport protein B JCP88_RS11795 PF17910 FeoB cytosolic helical domain JCP88_RS11795 PF07670 Nucleoside recognition JCP88_RS11795 PF07664 Ferrous iron transport protein B C terminus JCP88_RS11805 PF00462 Glutaredoxin JCP88_RS11810 PF00317 Ribonucleotide reductase, all-alpha domain JCP88_RS11810 PF08343 Ribonucleotide reductase N-terminal JCP88_RS11810 PF02867 Ribonucleotide reductase, barrel domain JCP88_RS11815 PF00268 Ribonucleotide reductase, small chain JCP88_RS11820 PF01594 AI-2E family transporter JCP88_RS11825 PF02308 MgtC family JCP88_RS11830 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JCP88_RS11835 PF12848 ABC transporter JCP88_RS11835 PF00005 ABC transporter JCP88_RS11850 PF07690 Major Facilitator Superfamily JCP88_RS11860 PF00542 Ribosomal protein L7/L12 C-terminal domain JCP88_RS11860 PF16320 Ribosomal protein L7/L12 dimerisation domain JCP88_RS11865 PF00466 Ribosomal protein L10 JCP88_RS11870 PF00687 Ribosomal protein L1p/L10e family JCP88_RS11875 PF03946 Ribosomal protein L11, N-terminal domain JCP88_RS11875 PF00298 Ribosomal protein L11, RNA binding domain JCP88_RS11880 PF01842 ACT domain JCP88_RS11880 PF03315 Serine dehydratase beta chain JCP88_RS11885 PF03313 Serine dehydratase alpha chain JCP88_RS11890 PF01070 FMN-dependent dehydrogenase JCP88_RS11895 PF00561 alpha/beta hydrolase fold JCP88_RS11900 PF00467 KOW motif JCP88_RS11900 PF02357 Transcription termination factor nusG JCP88_RS11905 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JCP88_RS11910 PF00471 Ribosomal protein L33 JCP88_RS11925 PF00781 Diacylglycerol kinase catalytic domain JCP88_RS11940 PF00005 ABC transporter JCP88_RS11945 PF07730 Histidine kinase JCP88_RS11950 PF00072 Response regulator receiver domain JCP88_RS11950 PF00196 Bacterial regulatory proteins, luxR family JCP88_RS11960 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain JCP88_RS11960 PF13538 UvrD-like helicase C-terminal domain JCP88_RS11960 PF14490 Helix-hairpin-helix containing domain JCP88_RS11970 PF00588 SpoU rRNA Methylase family JCP88_RS11975 PF01209 ubiE/COQ5 methyltransferase family JCP88_RS11980 PF03932 CutC family JCP88_RS11985 PF00571 CBS domain JCP88_RS11985 PF01769 Divalent cation transporter JCP88_RS11985 PF03448 MgtE intracellular N domain JCP88_RS11990 PF00849 RNA pseudouridylate synthase JCP88_RS11995 PF01513 ATP-NAD kinase JCP88_RS12000 PF04607 Region found in RelA / SpoT proteins JCP88_RS12005 PF01928 CYTH domain JCP88_RS12015 PF13683 Integrase core domain JCP88_RS12015 PF01610 Transposase JCP88_RS12020 PF08439 Oligopeptidase F JCP88_RS12020 PF01432 Peptidase family M3 JCP88_RS12030 PF05389 Negative regulator of genetic competence (MecA) JCP88_RS12035 PF03960 ArsC family JCP88_RS12040 PF00872 Transposase, Mutator family JCP88_RS12050 PF00271 Helicase conserved C-terminal domain JCP88_RS12050 PF04434 SWIM zinc finger JCP88_RS12050 PF00176 SNF2 family N-terminal domain JCP88_RS12055 PF13476 AAA domain JCP88_RS12060 PF00149 Calcineurin-like phosphoesterase JCP88_RS12060 PF12320 Type 5 capsule protein repressor C-terminal domain JCP88_RS12065 PF01553 Acyltransferase JCP88_RS12070 PF05175 Methyltransferase small domain JCP88_RS12075 PF01541 GIY-YIG catalytic domain JCP88_RS12080 PF01757 Acyltransferase family JCP88_RS12085 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JCP88_RS12085 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JCP88_RS12090 PF00152 tRNA synthetases class II (D, K and N) JCP88_RS12090 PF02938 GAD domain JCP88_RS12090 PF01336 OB-fold nucleic acid binding domain JCP88_RS12095 PF13393 Histidyl-tRNA synthetase JCP88_RS12095 PF03129 Anticodon binding domain JCP88_RS12100 PF00248 Aldo/keto reductase family JCP88_RS12105 PF00067 Cytochrome P450 JCP88_RS12110 PF02580 D-Tyr-tRNA(Tyr) deacylase JCP88_RS12115 PF02824 TGS domain JCP88_RS12115 PF04607 Region found in RelA / SpoT proteins JCP88_RS12115 PF13291 ACT domain JCP88_RS12120 PF04452 RNA methyltransferase JCP88_RS12135 PF02245 Methylpurine-DNA glycosylase (MPG) JCP88_RS12140 PF12002 MgsA AAA+ ATPase C terminal JCP88_RS12140 PF05496 Holliday junction DNA helicase RuvB P-loop domain JCP88_RS12140 PF16193 AAA C-terminal domain JCP88_RS12155 PF00582 Universal stress protein family JCP88_RS12165 PF00005 ABC transporter JCP88_RS12165 PF12848 ABC transporter JCP88_RS12165 PF16326 ABC transporter C-terminal domain JCP88_RS12170 PF00871 Acetokinase family JCP88_RS12175 PF02384 N-6 DNA Methylase JCP88_RS12200 PF07963 Prokaryotic N-terminal methylation motif JCP88_RS12205 PF00482 Type II secretion system (T2SS), protein F JCP88_RS12210 PF00437 Type II/IV secretion system protein JCP88_RS12215 PF01979 Amidohydrolase family JCP88_RS12215 PF13382 Adenine deaminase C-terminal domain JCP88_RS12220 PF02390 Putative methyltransferase JCP88_RS12230 PF05975 Bacterial ABC transporter protein EcsB JCP88_RS12235 PF00005 ABC transporter JCP88_RS12240 PF01230 HIT domain JCP88_RS12250 PF13145 PPIC-type PPIASE domain JCP88_RS12255 PF01336 OB-fold nucleic acid binding domain JCP88_RS12255 PF01966 HD domain JCP88_RS12260 PF13514 AAA domain JCP88_RS12265 PF00149 Calcineurin-like phosphoesterase JCP88_RS12300 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain JCP88_RS12300 PF04616 Glycosyl hydrolases family 43 JCP88_RS12315 PF01738 Dienelactone hydrolase family JCP88_RS12320 PF00295 Glycosyl hydrolases family 28 JCP88_RS12325 PF07470 Glycosyl Hydrolase Family 88 JCP88_RS12330 PF13416 Bacterial extracellular solute-binding protein JCP88_RS12340 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS12345 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS12350 PF17853 GGDEF-like domain JCP88_RS12350 PF12833 Helix-turn-helix domain JCP88_RS12355 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS12360 PF01232 Mannitol dehydrogenase Rossmann domain JCP88_RS12360 PF08125 Mannitol dehydrogenase C-terminal domain JCP88_RS12365 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus JCP88_RS12365 PF08666 SAF domain JCP88_RS12370 PF02614 Glucuronate isomerase JCP88_RS12375 PF00657 GDSL-like Lipase/Acylhydrolase JCP88_RS12385 PF00005 ABC transporter JCP88_RS12385 PF00664 ABC transporter transmembrane region JCP88_RS12390 PF06133 Control of competence regulator ComK, YlbF/YmcA JCP88_RS12395 PF00905 Penicillin binding protein transpeptidase domain JCP88_RS12395 PF00912 Transglycosylase JCP88_RS12400 PF00849 RNA pseudouridylate synthase JCP88_RS12400 PF01479 S4 domain JCP88_RS12405 PF00480 ROK family JCP88_RS12410 PF07748 Glycosyl hydrolases family 38 C-terminal domain JCP88_RS12410 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 JCP88_RS12410 PF09261 Alpha mannosidase middle domain JCP88_RS12410 PF01074 Glycosyl hydrolases family 38 N-terminal domain JCP88_RS12410 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain JCP88_RS12420 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS12430 PF12833 Helix-turn-helix domain JCP88_RS12430 PF00072 Response regulator receiver domain JCP88_RS12435 PF02743 Cache domain JCP88_RS12435 PF00672 HAMP domain JCP88_RS12435 PF06580 Histidine kinase JCP88_RS12435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS12445 PF12010 Domain of unknown function (DUF3502) JCP88_RS12450 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS12455 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS12460 PF00849 RNA pseudouridylate synthase JCP88_RS12460 PF01479 S4 domain JCP88_RS12465 PF14667 Polysaccharide biosynthesis C-terminal domain JCP88_RS12465 PF01943 Polysaccharide biosynthesis protein JCP88_RS12475 PF02875 Mur ligase family, glutamate ligase domain JCP88_RS12475 PF08245 Mur ligase middle domain JCP88_RS12480 PF02378 Phosphotransferase system, EIIC JCP88_RS12490 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JCP88_RS12495 PF05043 Mga helix-turn-helix domain JCP88_RS12495 PF00874 PRD domain JCP88_RS12495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JCP88_RS12495 PF08279 HTH domain JCP88_RS12500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS12540 PF13411 MerR HTH family regulatory protein JCP88_RS12540 PF06445 GyrI-like small molecule binding domain JCP88_RS12545 PF00005 ABC transporter JCP88_RS12545 PF00664 ABC transporter transmembrane region JCP88_RS12550 PF00005 ABC transporter JCP88_RS12550 PF00664 ABC transporter transmembrane region JCP88_RS12560 PF09334 tRNA synthetases class I (M) JCP88_RS12560 PF00133 tRNA synthetases class I (I, L, M and V) JCP88_RS12560 PF08264 Anticodon-binding domain of tRNA JCP88_RS12560 PF13603 Leucyl-tRNA synthetase, Domain 2 JCP88_RS12565 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JCP88_RS12565 PF01476 LysM domain JCP88_RS12570 PF01569 PAP2 superfamily JCP88_RS12575 PF04055 Radical SAM superfamily JCP88_RS12575 PF16199 Radical_SAM C-terminal domain JCP88_RS12580 PF06962 Putative rRNA methylase JCP88_RS12590 PF00872 Transposase, Mutator family JCP88_RS12625 PF00589 Phage integrase family JCP88_RS12625 PF14659 Phage integrase, N-terminal SAM-like domain JCP88_RS12630 PF00872 Transposase, Mutator family JCP88_RS12645 PF00005 ABC transporter JCP88_RS12645 PF00664 ABC transporter transmembrane region JCP88_RS12650 PF00664 ABC transporter transmembrane region JCP88_RS12650 PF00005 ABC transporter JCP88_RS12655 PF02909 Tetracyclin repressor-like, C-terminal domain JCP88_RS12655 PF00440 Bacterial regulatory proteins, tetR family JCP88_RS12665 PF07690 Major Facilitator Superfamily JCP88_RS12670 PF02773 S-adenosylmethionine synthetase, C-terminal domain JCP88_RS12670 PF00438 S-adenosylmethionine synthetase, N-terminal domain JCP88_RS12670 PF02772 S-adenosylmethionine synthetase, central domain JCP88_RS12825 PF01336 OB-fold nucleic acid binding domain JCP88_RS12825 PF00152 tRNA synthetases class II (D, K and N) JCP88_RS12830 PF01207 Dihydrouridine synthase (Dus) JCP88_RS12835 PF01430 Hsp33 protein JCP88_RS12840 PF01434 Peptidase family M41 JCP88_RS12840 PF17862 AAA+ lid domain JCP88_RS12840 PF00004 ATPase family associated with various cellular activities (AAA) JCP88_RS12840 PF06480 FtsH Extracellular JCP88_RS12845 PF00156 Phosphoribosyl transferase domain JCP88_RS12850 PF01171 PP-loop family JCP88_RS12850 PF11734 TilS substrate C-terminal domain JCP88_RS12855 PF00575 S1 RNA binding domain JCP88_RS12865 PF01479 S4 domain JCP88_RS12870 PF01943 Polysaccharide biosynthesis protein JCP88_RS12870 PF14667 Polysaccharide biosynthesis C-terminal domain JCP88_RS12875 PF02559 CarD-like/TRCF domain JCP88_RS12875 PF00270 DEAD/DEAH box helicase JCP88_RS12875 PF00271 Helicase conserved C-terminal domain JCP88_RS12875 PF03461 TRCF domain JCP88_RS12875 PF17757 UvrB interaction domain JCP88_RS12880 PF01195 Peptidyl-tRNA hydrolase JCP88_RS12885 PF00056 lactate/malate dehydrogenase, NAD binding domain JCP88_RS12885 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JCP88_RS12895 PF01709 Transcriptional regulator JCP88_RS12910 PF00877 NlpC/P60 family JCP88_RS12920 PF04085 rod shape-determining protein MreC JCP88_RS12930 PF00834 Ribulose-phosphate 3 epimerase family JCP88_RS12935 PF16745 RsgA N-terminal domain JCP88_RS12935 PF03193 RsgA GTPase JCP88_RS12940 PF00069 Protein kinase domain JCP88_RS12940 PF03793 PASTA domain JCP88_RS12950 PF01189 16S rRNA methyltransferase RsmB/F JCP88_RS12950 PF01029 NusB family JCP88_RS12955 PF02911 Formyl transferase, C-terminal domain JCP88_RS12955 PF00551 Formyl transferase JCP88_RS12960 PF01327 Polypeptide deformylase JCP88_RS12965 PF04851 Type III restriction enzyme, res subunit JCP88_RS12965 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JCP88_RS12965 PF00271 Helicase conserved C-terminal domain JCP88_RS12965 PF18074 Primosomal protein N C-terminal domain JCP88_RS12965 PF17764 3′ DNA-binding domain (3′BD) JCP88_RS12970 PF01192 RNA polymerase Rpb6 JCP88_RS12975 PF00625 Guanylate kinase JCP88_RS12985 PF03755 YicC-like family, N-terminal region JCP88_RS12985 PF08340 Domain of unknown function (DUF1732) JCP88_RS12995 PF01734 Patatin-like phospholipase JCP88_RS13005 PF09515 Thiamine transporter protein (Thia_YuaJ) JCP88_RS13010 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JCP88_RS13010 PF14572 Phosphoribosyl synthetase-associated domain JCP88_RS13015 PF00132 Bacterial transferase hexapeptide (six repeats) JCP88_RS13015 PF00483 Nucleotidyl transferase JCP88_RS13020 PF09182 Bacterial purine repressor, N-terminal JCP88_RS13020 PF00156 Phosphoribosyl transferase domain JCP88_RS13025 PF00950 ABC 3 transport family JCP88_RS13030 PF00005 ABC transporter JCP88_RS13035 PF01297 Zinc-uptake complex component A periplasmic JCP88_RS13035 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment JCP88_RS13045 PF03706 Lysylphosphatidylglycerol synthase TM region JCP88_RS13045 PF09924 Uncharacterised conserved protein (DUF2156) JCP88_RS13050 PF03807 NADP oxidoreductase coenzyme F420-dependent JCP88_RS13050 PF14748 Pyrroline-5-carboxylate reductase dimerisation JCP88_RS13060 PF12072 Domain of unknown function (DUF3552) JCP88_RS13060 PF01966 HD domain JCP88_RS13060 PF00013 KH domain JCP88_RS13065 PF00154 recA bacterial DNA recombination protein JCP88_RS13070 PF02464 Competence-damaged protein JCP88_RS13070 PF18146 Damage-inducible protein CinA KH domain JCP88_RS13070 PF00994 Probable molybdopterin binding domain JCP88_RS13075 PF01066 CDP-alcohol phosphatidyltransferase JCP88_RS13080 PF13464 Domain of unknown function (DUF4115) JCP88_RS13085 PF05193 Peptidase M16 inactive domain JCP88_RS13085 PF00675 Insulinase (Peptidase family M16) JCP88_RS13090 PF05193 Peptidase M16 inactive domain JCP88_RS13095 PF01741 Large-conductance mechanosensitive channel, MscL JCP88_RS13100 PF13673 Acetyltransferase (GNAT) domain JCP88_RS13105 PF06257 Biofilm formation stimulator VEG JCP88_RS13115 PF05991 YacP-like NYN domain JCP88_RS13120 PF08032 RNA 2'-O ribose methyltransferase substrate binding JCP88_RS13120 PF00588 SpoU rRNA Methylase family JCP88_RS13125 PF00636 Ribonuclease III domain JCP88_RS13130 PF01406 tRNA synthetases class I (C) catalytic domain JCP88_RS13130 PF09190 DALR domain JCP88_RS13135 PF00132 Bacterial transferase hexapeptide (six repeats) JCP88_RS13135 PF06426 Serine acetyltransferase, N-terminal JCP88_RS13140 PF00749 tRNA synthetases class I (E and Q), catalytic domain JCP88_RS13150 PF18073 Rubredoxin metal binding domain JCP88_RS13155 PF00692 dUTPase JCP88_RS13165 PF00696 Amino acid kinase family JCP88_RS13170 PF00171 Aldehyde dehydrogenase family JCP88_RS13185 PF07690 Major Facilitator Superfamily JCP88_RS13200 PF00005 ABC transporter JCP88_RS13205 PF00881 Nitroreductase family JCP88_RS13215 PF01476 LysM domain JCP88_RS13215 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JCP88_RS13220 PF00106 short chain dehydrogenase JCP88_RS13225 PF14602 Hexapeptide repeat of succinyl-transferase JCP88_RS13225 PF00132 Bacterial transferase hexapeptide (six repeats) JCP88_RS13225 PF12464 Maltose acetyltransferase JCP88_RS13230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JCP88_RS13230 PF03466 LysR substrate binding domain JCP88_RS13235 PF03123 CAT RNA binding domain JCP88_RS13235 PF00874 PRD domain JCP88_RS13240 PF02378 Phosphotransferase system, EIIC JCP88_RS13240 PF00367 phosphotransferase system, EIIB JCP88_RS13240 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS13245 PF05368 NmrA-like family JCP88_RS13260 PF06445 GyrI-like small molecule binding domain JCP88_RS13260 PF12833 Helix-turn-helix domain JCP88_RS13265 PF00872 Transposase, Mutator family JCP88_RS13275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JCP88_RS13275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JCP88_RS13280 PF03591 AzlC protein JCP88_RS13290 PF08240 Alcohol dehydrogenase GroES-like domain JCP88_RS13290 PF00107 Zinc-binding dehydrogenase JCP88_RS13295 PF01207 Dihydrouridine synthase (Dus) JCP88_RS13300 PF01061 ABC-2 type transporter JCP88_RS13305 PF00005 ABC transporter JCP88_RS13310 PF00488 MutS domain V JCP88_RS13310 PF05188 MutS domain II JCP88_RS13310 PF01624 MutS domain I JCP88_RS13310 PF05190 MutS family domain IV JCP88_RS13310 PF05192 MutS domain III JCP88_RS13315 PF00512 His Kinase A (phospho-acceptor) domain JCP88_RS13315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS13320 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS13320 PF00072 Response regulator receiver domain JCP88_RS13330 PF00005 ABC transporter JCP88_RS13360 PF07702 UTRA domain JCP88_RS13360 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS13365 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS13370 PF03613 PTS system mannose/fructose/sorbose family IID component JCP88_RS13375 PF03609 PTS system sorbose-specific iic component JCP88_RS13380 PF03830 PTS system sorbose subfamily IIB component JCP88_RS13385 PF03610 PTS system fructose IIA component JCP88_RS13390 PF01380 SIS domain JCP88_RS13435 PF03432 Relaxase/Mobilisation nuclease domain JCP88_RS13500 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JCP88_RS13530 PF02486 Replication initiation factor JCP88_RS13530 PF18106 Rolling Circle replication initiation protein N-terminal domain JCP88_RS13540 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) JCP88_RS13540 PF01348 Type II intron maturase JCP88_RS13570 PF00877 NlpC/P60 family JCP88_RS13595 PF07690 Major Facilitator Superfamily JCP88_RS13605 PF05257 CHAP domain JCP88_RS13605 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JCP88_RS13610 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS13610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS13615 PF00746 LPXTG cell wall anchor motif JCP88_RS13615 PF17480 AlphaC C-terminal JCP88_RS13615 PF08829 Alpha C protein N terminal JCP88_RS13615 PF04650 YSIRK type signal peptide JCP88_RS13625 PF12833 Helix-turn-helix domain JCP88_RS13655 PF07683 Cobalamin synthesis protein cobW C-terminal domain JCP88_RS13655 PF02492 CobW/HypB/UreG, nucleotide-binding domain JCP88_RS13675 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment JCP88_RS13675 PF01297 Zinc-uptake complex component A periplasmic JCP88_RS13685 PF07683 Cobalamin synthesis protein cobW C-terminal domain JCP88_RS13685 PF02492 CobW/HypB/UreG, nucleotide-binding domain JCP88_RS13690 PF00471 Ribosomal protein L33 JCP88_RS13700 PF01783 Ribosomal L32p protein family JCP88_RS13705 PF00253 Ribosomal protein S14p/S29e JCP88_RS13710 PF00005 ABC transporter JCP88_RS13710 PF00664 ABC transporter transmembrane region JCP88_RS13715 PF00664 ABC transporter transmembrane region JCP88_RS13715 PF00005 ABC transporter JCP88_RS13725 PF00005 ABC transporter JCP88_RS13735 PF00440 Bacterial regulatory proteins, tetR family JCP88_RS13745 PF01297 Zinc-uptake complex component A periplasmic JCP88_RS13750 PF00950 ABC 3 transport family JCP88_RS13760 PF00005 ABC transporter JCP88_RS13770 PF02899 Phage integrase, N-terminal SAM-like domain JCP88_RS13770 PF00589 Phage integrase family JCP88_RS13775 PF00380 Ribosomal protein S9/S16 JCP88_RS13780 PF00572 Ribosomal protein L13 JCP88_RS13785 PF00210 Ferritin-like domain JCP88_RS13790 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JCP88_RS13790 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JCP88_RS13795 PF06750 Bacterial Peptidase A24 N-terminal domain JCP88_RS13795 PF01478 Type IV leader peptidase family JCP88_RS13800 PF01625 Peptide methionine sulfoxide reductase JCP88_RS13805 PF13419 Haloacid dehalogenase-like hydrolase JCP88_RS13810 PF02595 Glycerate kinase family JCP88_RS13815 PF03632 Glycosyl hydrolase family 65 central catalytic domain JCP88_RS13815 PF03633 Glycosyl hydrolase family 65, C-terminal domain JCP88_RS13815 PF03636 Glycosyl hydrolase family 65, N-terminal domain JCP88_RS13820 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JCP88_RS13820 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JCP88_RS13825 PF01261 Xylose isomerase-like TIM barrel JCP88_RS13830 PF00107 Zinc-binding dehydrogenase JCP88_RS13835 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS13840 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS13845 PF01547 Bacterial extracellular solute-binding protein JCP88_RS13850 PF00128 Alpha amylase, catalytic domain JCP88_RS13855 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS13855 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JCP88_RS13860 PF05000 RNA polymerase Rpb1, domain 4 JCP88_RS13860 PF00623 RNA polymerase Rpb1, domain 2 JCP88_RS13860 PF04983 RNA polymerase Rpb1, domain 3 JCP88_RS13860 PF04997 RNA polymerase Rpb1, domain 1 JCP88_RS13860 PF04998 RNA polymerase Rpb1, domain 5 JCP88_RS13865 PF04561 RNA polymerase Rpb2, domain 2 JCP88_RS13865 PF04563 RNA polymerase beta subunit JCP88_RS13865 PF10385 RNA polymerase beta subunit external 1 domain JCP88_RS13865 PF00562 RNA polymerase Rpb2, domain 6 JCP88_RS13865 PF04560 RNA polymerase Rpb2, domain 7 JCP88_RS13865 PF04565 RNA polymerase Rpb2, domain 3 JCP88_RS13875 PF02653 Branched-chain amino acid transport system / permease component JCP88_RS13880 PF00005 ABC transporter JCP88_RS13885 PF02237 Biotin protein ligase C terminal domain JCP88_RS13885 PF08279 HTH domain JCP88_RS13885 PF03099 Biotin/lipoate A/B protein ligase family JCP88_RS13900 PF00348 Polyprenyl synthetase JCP88_RS13920 PF04205 FMN-binding domain JCP88_RS13925 PF02424 ApbE family JCP88_RS13935 PF07992 Pyridine nucleotide-disulphide oxidoreductase JCP88_RS13935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JCP88_RS13940 PF16325 Peptidase family U32 C-terminal domain JCP88_RS13940 PF01136 Peptidase family U32 JCP88_RS13945 PF01136 Peptidase family U32 JCP88_RS13950 PF02861 Clp amino terminal domain, pathogenicity island component JCP88_RS13950 PF07724 AAA domain (Cdc48 subfamily) JCP88_RS13950 PF17871 AAA lid domain JCP88_RS13950 PF10431 C-terminal, D2-small domain, of ClpB protein JCP88_RS13950 PF00004 ATPase family associated with various cellular activities (AAA) JCP88_RS13955 PF17727 CtsR C-terminal dimerization domain JCP88_RS13955 PF05848 CtsR N-terminal HTH domain JCP88_RS14020 PF00072 Response regulator receiver domain JCP88_RS14020 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS14025 PF13426 PAS domain JCP88_RS14025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS14025 PF00512 His Kinase A (phospho-acceptor) domain JCP88_RS14025 PF00672 HAMP domain JCP88_RS14030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JCP88_RS14030 PF02403 Seryl-tRNA synthetase N-terminal domain JCP88_RS14035 PF00478 IMP dehydrogenase / GMP reductase domain JCP88_RS14035 PF00571 CBS domain JCP88_RS14045 PF06071 Protein of unknown function (DUF933) JCP88_RS14045 PF01926 50S ribosome-binding GTPase JCP88_RS14050 PF06107 Bacterial protein of unknown function (DUF951) JCP88_RS14055 PF02195 ParB-like nuclease domain JCP88_RS14055 PF17762 HTH domain found in ParB protein JCP88_RS14060 PF13614 AAA domain JCP88_RS14065 PF02527 rRNA small subunit methyltransferase G JCP88_RS14070 PF13932 GidA associated domain JCP88_RS14070 PF01134 Glucose inhibited division protein A JCP88_RS14075 PF12631 MnmE helical domain JCP88_RS14075 PF01926 50S ribosome-binding GTPase JCP88_RS14075 PF10396 GTP-binding protein TrmE N-terminus JCP88_RS14085 PF14804 Jag N-terminus JCP88_RS14085 PF01424 R3H domain JCP88_RS14090 PF02096 60Kd inner membrane protein JCP88_RS14095 PF00825 Ribonuclease P JCP88_RS14100 PF00468 Ribosomal protein L34 JCP88_RS14110 PF00266 Aminotransferase class-V JCP88_RS14125 PF00005 ABC transporter JCP88_RS14125 PF08402 TOBE domain JCP88_RS14135 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS14150 PF02811 PHP domain JCP88_RS14170 PF04055 Radical SAM superfamily JCP88_RS14185 PF00005 ABC transporter JCP88_RS14205 PF08534 Redoxin JCP88_RS14240 PF00589 Phage integrase family JCP88_RS14245 PF00872 Transposase, Mutator family JCP88_RS14255 PF00872 Transposase, Mutator family JCP88_RS14265 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase JCP88_RS14265 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase JCP88_RS14270 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase JCP88_RS14270 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase JCP88_RS14275 PF04223 Citrate lyase, alpha subunit (CitF) JCP88_RS14280 PF03328 HpcH/HpaI aldolase/citrate lyase family JCP88_RS14285 PF06857 Malonate decarboxylase delta subunit (MdcD) JCP88_RS14290 PF08218 Citrate lyase ligase C-terminal domain JCP88_RS14295 PF03390 2-hydroxycarboxylate transporter family JCP88_RS14300 PF03949 Malic enzyme, NAD binding domain JCP88_RS14300 PF00390 Malic enzyme, N-terminal domain JCP88_RS14330 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JCP88_RS14355 PF01263 Aldose 1-epimerase JCP88_RS14365 PF00232 Glycosyl hydrolase family 1 JCP88_RS14370 PF02378 Phosphotransferase system, EIIC JCP88_RS14370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JCP88_RS14375 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JCP88_RS14380 PF01791 DeoC/LacD family aldolase JCP88_RS14385 PF00294 pfkB family carbohydrate kinase JCP88_RS14390 PF02502 Ribose/Galactose Isomerase JCP88_RS14395 PF02502 Ribose/Galactose Isomerase JCP88_RS14400 PF00455 DeoR C terminal sensor domain JCP88_RS14400 PF08220 DeoR-like helix-turn-helix domain JCP88_RS14415 PF01131 DNA topoisomerase JCP88_RS14415 PF01751 Toprim domain JCP88_RS14435 PF13610 DDE domain JCP88_RS14455 PF07728 AAA domain (dynein-related subfamily) JCP88_RS14455 PF12102 Domain of unknown function (DUF3578) JCP88_RS14465 PF01501 Glycosyl transferase family 8 JCP88_RS14475 PF00885 6,7-dimethyl-8-ribityllumazine synthase JCP88_RS14480 PF00027 Cyclic nucleotide-binding domain JCP88_RS14480 PF13545 Crp-like helix-turn-helix domain JCP88_RS14485 PF07972 NrdI Flavodoxin like JCP88_RS14500 PF00082 Subtilase family JCP88_RS14505 PF13860 FlgD Ig-like domain JCP88_RS14505 PF05922 Peptidase inhibitor I9 JCP88_RS14505 PF02225 PA domain JCP88_RS14505 PF00082 Subtilase family JCP88_RS14530 PF13610 DDE domain JCP88_RS14545 PF00480 ROK family JCP88_RS14550 PF00251 Glycosyl hydrolases family 32 N-terminal domain JCP88_RS14550 PF08244 Glycosyl hydrolases family 32 C terminal JCP88_RS14555 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS14560 PF00528 Binding-protein-dependent transport system inner membrane component JCP88_RS14570 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS14585 PF02796 Helix-turn-helix domain of resolvase JCP88_RS14585 PF00239 Resolvase, N terminal domain JCP88_RS14610 PF00929 Exonuclease JCP88_RS14630 PF13610 DDE domain JCP88_RS14635 PF03358 NADPH-dependent FMN reductase JCP88_RS14635 PF04205 FMN-binding domain JCP88_RS14635 PF00890 FAD binding domain JCP88_RS14640 PF04205 FMN-binding domain JCP88_RS14640 PF03358 NADPH-dependent FMN reductase JCP88_RS14640 PF00890 FAD binding domain JCP88_RS14645 PF02424 ApbE family JCP88_RS14655 PF13610 DDE domain JCP88_RS14665 PF13610 DDE domain JCP88_RS14685 PF01385 Probable transposase JCP88_RS14685 PF07282 Putative transposase DNA-binding domain JCP88_RS14685 PF12323 Helix-turn-helix domain JCP88_RS14715 PF17400 Family of unknown function (DUF5406) JCP88_RS14725 PF18840 Large polyvalent protein associated domain 25 JCP88_RS14730 PF13154 Protein of unknown function (DUF3991) JCP88_RS14755 PF00436 Single-strand binding protein family JCP88_RS14760 PF00436 Single-strand binding protein family JCP88_RS14815 PF09221 Bacteriocin class IId cyclical uberolysin-like JCP88_RS14820 PF00872 Transposase, Mutator family JCP88_RS14840 PF03611 PTS system sugar-specific permease component JCP88_RS14855 PF00834 Ribulose-phosphate 3 epimerase family JCP88_RS14865 PF13005 zinc-finger binding domain of transposase IS66 JCP88_RS14865 PF13817 IS66 C-terminal element JCP88_RS14865 PF03050 Transposase IS66 family JCP88_RS14865 PF13007 Transposase C of IS166 homeodomain JCP88_RS14880 PF03050 Transposase IS66 family JCP88_RS14880 PF13005 zinc-finger binding domain of transposase IS66 JCP88_RS14880 PF13007 Transposase C of IS166 homeodomain JCP88_RS14880 PF13817 IS66 C-terminal element JCP88_RS14915 PF00480 ROK family JCP88_RS14920 PF00367 phosphotransferase system, EIIB JCP88_RS14920 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS14920 PF02378 Phosphotransferase system, EIIC JCP88_RS14925 PF08244 Glycosyl hydrolases family 32 C terminal JCP88_RS14925 PF00251 Glycosyl hydrolases family 32 N-terminal domain JCP88_RS14930 PF00356 Bacterial regulatory proteins, lacI family JCP88_RS14940 PF01797 Transposase IS200 like JCP88_RS14950 PF00239 Resolvase, N terminal domain JCP88_RS14950 PF02796 Helix-turn-helix domain of resolvase JCP88_RS14955 PF01380 SIS domain JCP88_RS14955 PF01418 Helix-turn-helix domain, rpiR family JCP88_RS14960 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase JCP88_RS14965 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS14965 PF02378 Phosphotransferase system, EIIC JCP88_RS14965 PF00367 phosphotransferase system, EIIB JCP88_RS14970 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JCP88_RS14970 PF00367 phosphotransferase system, EIIB JCP88_RS14970 PF02378 Phosphotransferase system, EIIC JCP88_RS14990 PF00589 Phage integrase family JCP88_RS14990 PF13495 Phage integrase, N-terminal SAM-like domain JCP88_RS15000 PF02378 Phosphotransferase system, EIIC JCP88_RS15010 PF01791 DeoC/LacD family aldolase JCP88_RS15015 PF01380 SIS domain JCP88_RS15020 PF07702 UTRA domain JCP88_RS15020 PF00392 Bacterial regulatory proteins, gntR family JCP88_RS15030 PF00872 Transposase, Mutator family JCP88_RS15040 PF00872 Transposase, Mutator family JCP88_RS15055 PF02261 Aspartate decarboxylase JCP88_RS15060 PF02569 Pantoate-beta-alanine ligase JCP88_RS15065 PF02548 Ketopantoate hydroxymethyltransferase JCP88_RS15085 PF03050 Transposase IS66 family JCP88_RS15085 PF13005 zinc-finger binding domain of transposase IS66 JCP88_RS15085 PF13007 Transposase C of IS166 homeodomain JCP88_RS15085 PF13817 IS66 C-terminal element JCP88_RS15090 PF00872 Transposase, Mutator family JCP88_RS15095 PF13610 DDE domain JCP88_RS15100 PF00872 Transposase, Mutator family JCP88_RS15140 PF13610 DDE domain JCP88_RS15145 PF02796 Helix-turn-helix domain of resolvase JCP88_RS15145 PF00239 Resolvase, N terminal domain JCP88_RS15155 PF03120 NAD-dependent DNA ligase OB-fold domain JCP88_RS15155 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JCP88_RS15155 PF12826 Helix-hairpin-helix motif JCP88_RS15155 PF01653 NAD-dependent DNA ligase adenylation domain JCP88_RS15155 PF00533 BRCA1 C Terminus (BRCT) domain JCP88_RS15160 PF00239 Resolvase, N terminal domain JCP88_RS15160 PF02796 Helix-turn-helix domain of resolvase JCP88_RS15170 PF01471 Putative peptidoglycan binding domain JCP88_RS15170 PF08924 Domain of unknown function (DUF1906) JCP88_RS15195 PF00072 Response regulator receiver domain JCP88_RS15195 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS15280 PF12696 TraM recognition site of TraD and TraG JCP88_RS15330 PF04203 Sortase domain JCP88_RS15365 PF17400 Family of unknown function (DUF5406) JCP88_RS15390 PF13614 AAA domain JCP88_RS15410 PF00817 impB/mucB/samB family JCP88_RS15410 PF11799 impB/mucB/samB family C-terminal domain JCP88_RS15410 PF11798 IMS family HHH motif JCP88_RS15415 PF02796 Helix-turn-helix domain of resolvase JCP88_RS15415 PF00239 Resolvase, N terminal domain JCP88_RS15430 PF02796 Helix-turn-helix domain of resolvase JCP88_RS15430 PF00239 Resolvase, N terminal domain JCP88_RS15445 PF12323 Helix-turn-helix domain JCP88_RS15445 PF01385 Probable transposase JCP88_RS15445 PF07282 Putative transposase DNA-binding domain JCP88_RS15480 PF00436 Single-strand binding protein family JCP88_RS15505 PF13154 Protein of unknown function (DUF3991) JCP88_RS15510 PF18840 Large polyvalent protein associated domain 25 JCP88_RS15520 PF06970 Replication initiator protein A (RepA) N-terminus JCP88_RS15520 PF18008 Replication initiator protein A C-terminal domain JCP88_RS15525 PF13610 DDE domain JCP88_RS15530 PF06308 23S rRNA methylastransferase leader peptide (ErmCL) JCP88_RS15535 PF00398 Ribosomal RNA adenine dimethylase JCP88_RS15560 PF08241 Methyltransferase domain JCP88_RS15570 PF13610 DDE domain JCP88_RS15580 PF00486 Transcriptional regulatory protein, C terminal JCP88_RS15580 PF00072 Response regulator receiver domain JCP88_RS15585 PF00512 His Kinase A (phospho-acceptor) domain JCP88_RS15585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JCP88_RS15590 PF13683 Integrase core domain JCP88_RS15590 PF01610 Transposase JCP88_RS15595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JCP88_RS15595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JCP88_RS15600 PF07478 D-ala D-ala ligase C-terminus JCP88_RS15600 PF01820 D-ala D-ala ligase N-terminus JCP88_RS15605 PF01427 D-ala-D-ala dipeptidase JCP88_RS15610 PF13610 DDE domain JCP88_RS15615 PF02557 D-alanyl-D-alanine carboxypeptidase JCP88_RS15620 PF04892 VanZ like family JCP88_RS15625 PF01022 Bacterial regulatory protein, arsR family JCP88_RS15640 PF00239 Resolvase, N terminal domain JCP88_RS15640 PF02796 Helix-turn-helix domain of resolvase JCP88_RS15660 PF13610 DDE domain JCP88_RS15695 PF13610 DDE domain JCP88_RS15715 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system JCP88_RS15725 PF00239 Resolvase, N terminal domain JCP88_RS15725 PF02796 Helix-turn-helix domain of resolvase JCP88_RS15730 PF00817 impB/mucB/samB family JCP88_RS15730 PF11798 IMS family HHH motif JCP88_RS15730 PF11799 impB/mucB/samB family C-terminal domain JCP88_RS15755 PF13614 AAA domain JCP88_RS15780 PF01721 Class II bacteriocin JCP88_RS15785 PF08951 Enterocin A Immunity JCP88_RS15795 PF03432 Relaxase/Mobilisation nuclease domain JCP88_RS15825 PF01446 Replication protein JCP88_RS15840 PF01446 Replication protein JCP88_RS15855 PF02486 Replication initiation factor