CO997_RS00005 SM00382 ATPases associated with a variety of cellular activities CO997_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CO997_RS00010 SM00480 DNA polymerase III beta subunit CO997_RS00025 SM00387 Histidine kinase-like ATPases CO997_RS00025 SM00433 TopoisomeraseII CO997_RS00030 SM00434 DNA Topoisomerase IV CO997_RS00050 SM00267 diguanylate cyclase CO997_RS00075 SM00788 Adenylosuccinate synthetase CO997_RS00085 SM00382 ATPases associated with a variety of cellular activities CO997_RS00165 SM00420 helix_turn_helix, Deoxyribose operon repressor CO997_RS00165 SM01134 CO997_RS00165 CO997_RS00205 SM00354 helix_turn _helix lactose operon repressor CO997_RS00210 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CO997_RS00215 SM01133 CO997_RS00215 CO997_RS00230 SM00382 ATPases associated with a variety of cellular activities CO997_RS00265 SM00855 Phosphoglycerate mutase family CO997_RS00270 SM00857 Resolvase, N terminal domain CO997_RS00290 SM00838 Elongation factor G C-terminus CO997_RS00290 SM00889 Elongation factor G, domain IV CO997_RS00300 SM01403 CO997_RS00300 CO997_RS00320 SM01382 CO997_RS00320 CO997_RS00320 SM01383 CO997_RS00320 CO997_RS00335 SM00322 K homology RNA-binding domain CO997_RS00355 SM01374 CO997_RS00355 CO997_RS00360 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CO997_RS00415 SM00316 Ribosomal protein S1-like RNA-binding domain CO997_RS00435 SM00662 RNA polymerases D CO997_RS00445 SM00382 ATPases associated with a variety of cellular activities CO997_RS00450 SM00382 ATPases associated with a variety of cellular activities CO997_RS00530 SM01120 CO997_RS00530 CO997_RS00530 SM01121 CO997_RS00530 CO997_RS00535 SM00487 DEAD-like helicases superfamily CO997_RS00535 SM00490 helicase superfamily c-terminal domain CO997_RS00550 SM00382 ATPases associated with a variety of cellular activities CO997_RS00555 SM00382 ATPases associated with a variety of cellular activities CO997_RS00580 SM00358 Double-stranded RNA binding motif CO997_RS00580 SM00535 Ribonuclease III family CO997_RS00585 SM00968 SMC proteins Flexible Hinge Domain CO997_RS00595 SM00382 ATPases associated with a variety of cellular activities CO997_RS00595 SM00962 SRP54-type protein, GTPase domain CO997_RS00595 SM00963 SRP54-type protein, helical bundle domain CO997_RS00625 SM00382 ATPases associated with a variety of cellular activities CO997_RS00700 SM00363 S4 RNA-binding domain CO997_RS00700 SM01390 CO997_RS00700 CO997_RS00735 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CO997_RS00735 SM00534 ATPase domain of DNA mismatch repair MUTS family CO997_RS00740 SM00853 MutL C terminal dimerisation domain CO997_RS00740 SM01340 CO997_RS00740 CO997_RS00775 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS00775 SM00866 CO997_RS00775 CO997_RS00785 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CO997_RS00790 SM00382 ATPases associated with a variety of cellular activities CO997_RS00800 SM00226 Low molecular weight phosphatase family CO997_RS00825 SM00382 ATPases associated with a variety of cellular activities CO997_RS00830 SM00062 Bacterial periplasmic substrate-binding proteins CO997_RS00850 SM00830 Chorismate mutase type II CO997_RS00850 SM01266 CO997_RS00850 CO997_RS00870 SM01387 CO997_RS00870 CO997_RS00875 SM00316 Ribosomal protein S1-like RNA-binding domain CO997_RS00875 SM00322 K homology RNA-binding domain CO997_RS00895 SM00116 Domain in cystathionine beta-synthase and other proteins. CO997_RS00895 SM01091 Transporter associated domain CO997_RS00990 SM00487 DEAD-like helicases superfamily CO997_RS00990 SM00490 helicase superfamily c-terminal domain CO997_RS01000 SM01005 Alanine racemase, C-terminal domain CO997_RS01020 SM00829 Enoylreductase CO997_RS01095 SM00116 Domain in cystathionine beta-synthase and other proteins. CO997_RS01095 SM00382 ATPases associated with a variety of cellular activities CO997_RS01125 SM00831 Cation transporter/ATPase, N-terminus CO997_RS01145 SM01323 CO997_RS01145 CO997_RS01280 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS01280 SM00895 CO997_RS01280 CO997_RS01345 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CO997_RS01380 SM00507 HNH nucleases CO997_RS01395 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS01400 SM00507 HNH nucleases CO997_RS01455 SM00889 Elongation factor G, domain IV CO997_RS01485 SM00487 DEAD-like helicases superfamily CO997_RS01525 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CO997_RS01560 SM01133 CO997_RS01560 CO997_RS01575 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS01740 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS01740 SM00895 CO997_RS01740 CO997_RS01835 SM00831 Cation transporter/ATPase, N-terminus CO997_RS01860 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CO997_RS01950 SM00347 helix_turn_helix multiple antibiotic resistance protein CO997_RS01960 SM00873 B3/4 domain CO997_RS01980 SM00642 Alpha-amylase domain CO997_RS02010 SM00347 helix_turn_helix multiple antibiotic resistance protein CO997_RS02050 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CO997_RS02050 SM00534 ATPase domain of DNA mismatch repair MUTS family CO997_RS02090 SM00450 Rhodanese Homology Domain CO997_RS02095 SM00450 Rhodanese Homology Domain CO997_RS02135 SM01120 CO997_RS02135 CO997_RS02150 SM00100 Cyclic nucleotide-monophosphate binding domain CO997_RS02150 SM00419 helix_turn_helix, cAMP Regulatory protein CO997_RS02160 SM00382 ATPases associated with a variety of cellular activities CO997_RS02180 SM00363 S4 RNA-binding domain CO997_RS02200 SM00354 helix_turn _helix lactose operon repressor CO997_RS02260 SM00422 helix_turn_helix, mercury resistance CO997_RS02310 SM00382 ATPases associated with a variety of cellular activities CO997_RS02315 SM00448 cheY-homologous receiver domain CO997_RS02315 SM00862 Transcriptional regulatory protein, C terminal CO997_RS02320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CO997_RS02320 SM00387 Histidine kinase-like ATPases CO997_RS02320 SM00388 His Kinase A (phosphoacceptor) domain CO997_RS02355 SM00244 prohibitin homologues CO997_RS02365 SM00382 ATPases associated with a variety of cellular activities CO997_RS02380 SM00047 Lysozyme subfamily 2 CO997_RS02400 SM00354 helix_turn _helix lactose operon repressor CO997_RS02410 SM00382 ATPases associated with a variety of cellular activities CO997_RS02425 SM00642 Alpha-amylase domain CO997_RS02445 SM00448 cheY-homologous receiver domain CO997_RS02445 SM00850 LytTr DNA-binding domain CO997_RS02455 SM00793 Accessory gene regulator B CO997_RS02550 SM00841 Elongation factor P, C-terminal CO997_RS02550 SM01185 CO997_RS02550 CO997_RS02565 SM01130 CO997_RS02565 CO997_RS02580 SM00859 Semialdehyde dehydrogenase, NAD binding domain CO997_RS02640 SM00342 helix_turn_helix, arabinose operon control protein CO997_RS02660 SM00382 ATPases associated with a variety of cellular activities CO997_RS02680 SM00567 E-Z type HEAT repeats CO997_RS02685 SM00257 Lysin motif CO997_RS02835 SM00014 Acid phosphatase homologues CO997_RS02845 SM00327 von Willebrand factor (vWF) type A domain CO997_RS02865 SM00448 cheY-homologous receiver domain CO997_RS02865 SM00862 Transcriptional regulatory protein, C terminal CO997_RS02870 SM00387 Histidine kinase-like ATPases CO997_RS02915 SM00710 Parallel beta-helix repeats CO997_RS02935 SM01400 CO997_RS02935 CO997_RS02990 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CO997_RS02990 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CO997_RS02990 SM00493 CO997_RS02990 CO997_RS03045 SM00382 ATPases associated with a variety of cellular activities CO997_RS03045 SM00930 CO997_RS03045 CO997_RS03060 SM00382 ATPases associated with a variety of cellular activities CO997_RS03090 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS03110 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS03115 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS03145 SM01061 CAT RNA binding domain CO997_RS03165 SM00487 DEAD-like helicases superfamily CO997_RS03180 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS03190 SM00382 ATPases associated with a variety of cellular activities CO997_RS03215 SM00046 Diacylglycerol kinase catalytic domain (presumed) CO997_RS03240 SM00448 cheY-homologous receiver domain CO997_RS03240 SM00850 LytTr DNA-binding domain CO997_RS03265 SM01061 CAT RNA binding domain CO997_RS03280 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS03280 SM00866 CO997_RS03280 CO997_RS03325 SM00354 helix_turn _helix lactose operon repressor CO997_RS03360 SM00562 CO997_RS03360 CO997_RS03365 SM00831 Cation transporter/ATPase, N-terminus CO997_RS03380 SM00382 ATPases associated with a variety of cellular activities CO997_RS03380 SM00930 CO997_RS03380 CO997_RS03440 SM00382 ATPases associated with a variety of cellular activities CO997_RS03445 SM00855 Phosphoglycerate mutase family CO997_RS03480 SM00382 ATPases associated with a variety of cellular activities CO997_RS03545 SM00986 Uracil DNA glycosylase superfamily CO997_RS03545 SM00987 UreE urease accessory protein, C-terminal domain CO997_RS03570 SM00479 CO997_RS03570 CO997_RS03630 SM00829 Enoylreductase CO997_RS03655 SM00829 Enoylreductase CO997_RS03660 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS03665 SM00382 ATPases associated with a variety of cellular activities CO997_RS03685 SM00382 ATPases associated with a variety of cellular activities CO997_RS03740 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS03780 SM00422 helix_turn_helix, mercury resistance CO997_RS03785 SM01230 CO997_RS03785 CO997_RS03820 SM00357 Cold shock protein domain CO997_RS03820 SM00382 ATPases associated with a variety of cellular activities CO997_RS03820 SM00959 Rho termination factor, N-terminal domain CO997_RS03850 SM00420 helix_turn_helix, Deoxyribose operon repressor CO997_RS03850 SM01134 CO997_RS03850 CO997_RS03870 SM00419 helix_turn_helix, cAMP Regulatory protein CO997_RS03890 SM00382 ATPases associated with a variety of cellular activities CO997_RS03900 SM00493 CO997_RS03900 CO997_RS03950 SM00382 ATPases associated with a variety of cellular activities CO997_RS04000 SM00849 Metallo-beta-lactamase superfamily CO997_RS04050 SM00986 Uracil DNA glycosylase superfamily CO997_RS04050 SM00987 UreE urease accessory protein, C-terminal domain CO997_RS04070 SM00382 ATPases associated with a variety of cellular activities CO997_RS04190 SM00740 CO997_RS04190 CO997_RS04215 SM00842 Cell division protein FtsA CO997_RS04220 SM00864 Tubulin/FtsZ family, GTPase domain CO997_RS04220 SM00865 Tubulin/FtsZ family, C-terminal domain CO997_RS04240 SM00363 S4 RNA-binding domain CO997_RS04260 SM00529 Helix-turn-helix diphteria tox regulatory element CO997_RS04260 SM00899 CO997_RS04260 CO997_RS04280 SM00487 DEAD-like helicases superfamily CO997_RS04280 SM00490 helicase superfamily c-terminal domain CO997_RS04285 SM00382 ATPases associated with a variety of cellular activities CO997_RS04355 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS04360 SM01040 BRO family, N-terminal domain CO997_RS04475 SM00507 HNH nucleases CO997_RS04590 SM00644 CO997_RS04590 CO997_RS04760 SM00382 ATPases associated with a variety of cellular activities CO997_RS04845 SM00387 Histidine kinase-like ATPases CO997_RS04850 SM00421 helix_turn_helix, Lux Regulon CO997_RS04850 SM00448 cheY-homologous receiver domain CO997_RS04895 SM00357 Cold shock protein domain CO997_RS04925 SM00478 endonuclease III CO997_RS04925 SM00525 CO997_RS04925 CO997_RS04945 SM00116 Domain in cystathionine beta-synthase and other proteins. CO997_RS04945 SM01091 Transporter associated domain CO997_RS04970 SM00382 ATPases associated with a variety of cellular activities CO997_RS04970 SM01086 C-terminal, D2-small domain, of ClpB protein CO997_RS05005 SM00465 GIY-YIG type nucleases (URI domain) CO997_RS05010 SM00347 helix_turn_helix multiple antibiotic resistance protein CO997_RS05025 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CO997_RS05030 SM00822 CO997_RS05030 CO997_RS05035 SM00825 Beta-ketoacyl synthase CO997_RS05050 SM00878 Biotin carboxylase C-terminal domain CO997_RS05075 SM01103 CO997_RS05075 CO997_RS05085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CO997_RS05135 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CO997_RS05170 SM00481 DNA polymerase alpha chain like domain CO997_RS05210 SM01350 CO997_RS05210 CO997_RS05215 SM00448 cheY-homologous receiver domain CO997_RS05215 SM00862 Transcriptional regulatory protein, C terminal CO997_RS05220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CO997_RS05220 SM00387 Histidine kinase-like ATPases CO997_RS05220 SM00388 His Kinase A (phosphoacceptor) domain CO997_RS05325 SM01061 CAT RNA binding domain CO997_RS05370 SM00028 Tetratricopeptide repeats CO997_RS05370 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS05375 SM00420 helix_turn_helix, Deoxyribose operon repressor CO997_RS05375 SM01134 CO997_RS05375 CO997_RS05400 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CO997_RS05410 SM01007 Class II Aldolase and Adducin N-terminal domain CO997_RS05470 SM01007 Class II Aldolase and Adducin N-terminal domain CO997_RS05490 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS05490 SM00866 CO997_RS05490 CO997_RS05535 SM00155 Phospholipase D. Active site motifs. CO997_RS05540 SM00831 Cation transporter/ATPase, N-terminus CO997_RS05615 SM00400 zinc finger CO997_RS05615 SM00493 CO997_RS05615 CO997_RS05675 SM00363 S4 RNA-binding domain CO997_RS05710 SM00487 DEAD-like helicases superfamily CO997_RS05710 SM00490 helicase superfamily c-terminal domain CO997_RS05715 SM00257 Lysin motif CO997_RS05725 SM00316 Ribosomal protein S1-like RNA-binding domain CO997_RS05735 SM00411 bacterial (prokaryotic) histone like domain CO997_RS05755 SM00028 Tetratricopeptide repeats CO997_RS05760 SM00914 CO997_RS05760 CO997_RS05805 SM00382 ATPases associated with a variety of cellular activities CO997_RS05880 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CO997_RS05880 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CO997_RS05880 SM00493 CO997_RS05880 CO997_RS05900 SM00382 ATPases associated with a variety of cellular activities CO997_RS05900 SM01086 C-terminal, D2-small domain, of ClpB protein CO997_RS05920 SM01207 CO997_RS05920 CO997_RS05925 SM00881 CoA binding domain CO997_RS05930 SM00387 Histidine kinase-like ATPases CO997_RS05930 SM00433 TopoisomeraseII CO997_RS05935 SM00434 DNA Topoisomerase IV CO997_RS05950 SM01131 CO997_RS05950 CO997_RS05985 SM00354 helix_turn _helix lactose operon repressor CO997_RS06020 SM00382 ATPases associated with a variety of cellular activities CO997_RS06040 SM00382 ATPases associated with a variety of cellular activities CO997_RS06050 SM00257 Lysin motif CO997_RS06110 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS06130 SM00448 cheY-homologous receiver domain CO997_RS06135 SM00387 Histidine kinase-like ATPases CO997_RS06150 SM00244 prohibitin homologues CO997_RS06185 SM00047 Lysozyme subfamily 2 CO997_RS06235 SM01001 AIR carboxylase CO997_RS06245 SM00998 Adenylosuccinate lyase C-terminus CO997_RS06265 SM01211 CO997_RS06265 CO997_RS06290 SM00798 AICARFT/IMPCHase bienzyme CO997_RS06290 SM00851 MGS-like domain CO997_RS06295 SM01209 CO997_RS06295 CO997_RS06295 SM01210 CO997_RS06295 CO997_RS06305 SM00342 helix_turn_helix, arabinose operon control protein CO997_RS06305 SM00448 cheY-homologous receiver domain CO997_RS06310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CO997_RS06310 SM00387 Histidine kinase-like ATPases CO997_RS06325 SM00382 ATPases associated with a variety of cellular activities CO997_RS06335 SM01240 CO997_RS06335 CO997_RS06345 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS06360 SM00861 Transketolase, pyrimidine binding domain CO997_RS06385 SM00838 Elongation factor G C-terminus CO997_RS06390 SM00341 Helicase and RNase D C-terminal CO997_RS06390 SM00487 DEAD-like helicases superfamily CO997_RS06390 SM00490 helicase superfamily c-terminal domain CO997_RS06390 SM00956 CO997_RS06390 CO997_RS06405 SM00878 Biotin carboxylase C-terminal domain CO997_RS06440 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CO997_RS06460 SM00849 Metallo-beta-lactamase superfamily CO997_RS06495 SM00855 Phosphoglycerate mutase family CO997_RS06500 SM00849 Metallo-beta-lactamase superfamily CO997_RS06505 SM00487 DEAD-like helicases superfamily CO997_RS06505 SM00488 CO997_RS06505 CO997_RS06505 SM00491 CO997_RS06505 CO997_RS06540 SM00257 Lysin motif CO997_RS06645 SM00873 B3/4 domain CO997_RS06645 SM00874 tRNA synthetase B5 domain CO997_RS06645 SM00896 Ferredoxin-fold anticodon binding domain CO997_RS06655 SM00382 ATPases associated with a variety of cellular activities CO997_RS06660 SM00062 Bacterial periplasmic substrate-binding proteins CO997_RS06660 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CO997_RS06690 SM00116 Domain in cystathionine beta-synthase and other proteins. CO997_RS06740 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CO997_RS06800 SM00861 Transketolase, pyrimidine binding domain CO997_RS06810 SM00047 Lysozyme subfamily 2 CO997_RS06810 SM00257 Lysin motif CO997_RS06835 SM00347 helix_turn_helix multiple antibiotic resistance protein CO997_RS06850 SM00478 endonuclease III CO997_RS06850 SM00525 CO997_RS06850 CO997_RS06885 SM00981 CO997_RS06885 CO997_RS06895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CO997_RS06935 SM00487 DEAD-like helicases superfamily CO997_RS06935 SM00490 helicase superfamily c-terminal domain CO997_RS06950 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CO997_RS06975 SM00357 Cold shock protein domain CO997_RS07000 SM00363 S4 RNA-binding domain CO997_RS07025 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CO997_RS07030 SM00851 MGS-like domain CO997_RS07030 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CO997_RS07030 SM01209 CO997_RS07030 CO997_RS07045 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CO997_RS07065 SM01057 Eukaryotic-type carbonic anhydrase CO997_RS07095 SM00382 ATPases associated with a variety of cellular activities CO997_RS07115 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CO997_RS07115 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CO997_RS07115 SM00493 CO997_RS07115 CO997_RS07140 SM00342 helix_turn_helix, arabinose operon control protein CO997_RS07200 SM00327 von Willebrand factor (vWF) type A domain CO997_RS07230 SM00382 ATPases associated with a variety of cellular activities CO997_RS07240 SM00448 cheY-homologous receiver domain CO997_RS07240 SM00862 Transcriptional regulatory protein, C terminal CO997_RS07245 SM00387 Histidine kinase-like ATPases CO997_RS07245 SM00388 His Kinase A (phosphoacceptor) domain CO997_RS07290 SM00642 Alpha-amylase domain CO997_RS07295 SM00327 von Willebrand factor (vWF) type A domain CO997_RS07370 SM00072 Guanylate kinase homologues. CO997_RS07395 SM00062 Bacterial periplasmic substrate-binding proteins CO997_RS07440 SM00642 Alpha-amylase domain CO997_RS07460 SM00347 helix_turn_helix multiple antibiotic resistance protein CO997_RS07490 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS07490 SM00895 CO997_RS07490 CO997_RS07540 SM00903 Flavin reductase like domain CO997_RS07550 SM01022 CO997_RS07550 CO997_RS07555 SM00861 Transketolase, pyrimidine binding domain CO997_RS07575 SM00857 Resolvase, N terminal domain CO997_RS07595 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS07600 SM00871 Bacterial transcription activator, effector binding domain CO997_RS07675 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS07775 SM00357 Cold shock protein domain CO997_RS07840 SM01350 CO997_RS07840 CO997_RS07985 SM00838 Elongation factor G C-terminus CO997_RS08005 SM00382 ATPases associated with a variety of cellular activities CO997_RS08005 SM01086 C-terminal, D2-small domain, of ClpB protein CO997_RS08020 SM00046 Diacylglycerol kinase catalytic domain (presumed) CO997_RS08070 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CO997_RS08070 SM01232 CO997_RS08070 CO997_RS08075 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CO997_RS08075 SM00474 3'-5' exonuclease CO997_RS08075 SM00475 5'-3' exonuclease CO997_RS08075 SM00482 DNA polymerase A domain CO997_RS08100 SM00731 SprT homologues. CO997_RS08105 SM00316 Ribosomal protein S1-like RNA-binding domain CO997_RS08105 SM00732 Likely ribonuclease with RNase H fold. CO997_RS08115 SM00450 Rhodanese Homology Domain CO997_RS08145 SM00855 Phosphoglycerate mutase family CO997_RS08160 SM00938 Nitrogen regulatory protein P-II CO997_RS08190 SM00448 cheY-homologous receiver domain CO997_RS08195 SM00342 helix_turn_helix, arabinose operon control protein CO997_RS08245 SM01038 Beta galactosidase small chain CO997_RS08260 SM00354 helix_turn _helix lactose operon repressor CO997_RS08285 SM00046 Diacylglycerol kinase catalytic domain (presumed) CO997_RS08290 SM00845 GatB domain CO997_RS08305 SM00292 breast cancer carboxy-terminal domain CO997_RS08305 SM00532 Ligase N family CO997_RS08330 SM00420 helix_turn_helix, Deoxyribose operon repressor CO997_RS08330 SM01134 CO997_RS08330 CO997_RS08355 SM00382 ATPases associated with a variety of cellular activities CO997_RS08355 SM00994 ClpX C4-type zinc finger CO997_RS08355 SM01086 C-terminal, D2-small domain, of ClpB protein CO997_RS08405 SM00890 Domain of unknown function CO997_RS08485 SM00382 ATPases associated with a variety of cellular activities CO997_RS08490 SM00487 DEAD-like helicases superfamily CO997_RS08490 SM00490 helicase superfamily c-terminal domain CO997_RS08495 SM00062 Bacterial periplasmic substrate-binding proteins CO997_RS08500 SM00382 ATPases associated with a variety of cellular activities CO997_RS08520 SM00271 DnaJ molecular chaperone homology domain CO997_RS08540 SM00729 Elongator protein 3, MiaB family, Radical SAM CO997_RS08590 SM00904 Riboflavin kinase CO997_RS08630 SM00316 Ribosomal protein S1-like RNA-binding domain CO997_RS08630 SM00322 K homology RNA-binding domain CO997_RS08640 SM00479 CO997_RS08640 CO997_RS08640 SM00481 DNA polymerase alpha chain like domain CO997_RS08650 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CO997_RS08710 SM00836 DALR anticodon binding domain CO997_RS08710 SM01016 Arginyl tRNA synthetase N terminal dom CO997_RS08760 SM00354 helix_turn _helix lactose operon repressor CO997_RS08790 SM00450 Rhodanese Homology Domain CO997_RS08825 SM00382 ATPases associated with a variety of cellular activities CO997_RS08875 SM00644 CO997_RS08875 CO997_RS08990 SM00507 HNH nucleases CO997_RS09125 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS09225 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CO997_RS09270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CO997_RS09270 SM00387 Histidine kinase-like ATPases CO997_RS09270 SM00388 His Kinase A (phosphoacceptor) domain CO997_RS09275 SM00448 cheY-homologous receiver domain CO997_RS09275 SM00862 Transcriptional regulatory protein, C terminal CO997_RS09350 SM00422 helix_turn_helix, mercury resistance CO997_RS09470 SM00382 ATPases associated with a variety of cellular activities CO997_RS09470 SM00962 SRP54-type protein, GTPase domain CO997_RS09470 SM00963 SRP54-type protein, helical bundle domain CO997_RS09485 SM00448 cheY-homologous receiver domain CO997_RS09485 SM00862 Transcriptional regulatory protein, C terminal CO997_RS09490 SM00387 Histidine kinase-like ATPases CO997_RS09490 SM00388 His Kinase A (phosphoacceptor) domain CO997_RS09705 SM00479 CO997_RS09705 CO997_RS09705 SM00491 CO997_RS09705 CO997_RS09710 SM00357 Cold shock protein domain CO997_RS09735 SM00936 Penicillin-binding protein 5, C-terminal domain CO997_RS09760 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CO997_RS09765 SM00967 RNA 2'-O ribose methyltransferase substrate binding CO997_RS09865 SM00984 UDP binding domain CO997_RS09930 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CO997_RS09935 SM00322 K homology RNA-binding domain CO997_RS09965 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CO997_RS10010 SM00382 ATPases associated with a variety of cellular activities CO997_RS10015 SM00382 ATPases associated with a variety of cellular activities CO997_RS10040 SM00518 AP endonuclease family 2 CO997_RS10085 SM00354 helix_turn _helix lactose operon repressor CO997_RS10160 SM00382 ATPases associated with a variety of cellular activities CO997_RS10165 SM00382 ATPases associated with a variety of cellular activities CO997_RS10185 SM00155 Phospholipase D. Active site motifs. CO997_RS10195 SM00382 ATPases associated with a variety of cellular activities CO997_RS10205 SM00957 SecA DEAD-like domain CO997_RS10205 SM00958 SecA preprotein cross-linking domain CO997_RS10220 SM00487 DEAD-like helicases superfamily CO997_RS10220 SM00490 helicase superfamily c-terminal domain CO997_RS10240 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS10240 SM00866 CO997_RS10240 CO997_RS10270 SM01234 CO997_RS10270 CO997_RS10300 SM00382 ATPases associated with a variety of cellular activities CO997_RS10340 SM00316 Ribosomal protein S1-like RNA-binding domain CO997_RS10340 SM00955 CO997_RS10340 CO997_RS10380 SM01192 CO997_RS10380 CO997_RS10380 SM01193 CO997_RS10380 CO997_RS10395 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CO997_RS10450 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CO997_RS10480 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS10550 SM00382 ATPases associated with a variety of cellular activities CO997_RS10555 SM00465 GIY-YIG type nucleases (URI domain) CO997_RS10565 SM00463 Small MutS-related domain CO997_RS10565 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CO997_RS10565 SM00534 ATPase domain of DNA mismatch repair MUTS family CO997_RS10585 SM00646 CO997_RS10585 CO997_RS10595 SM00382 ATPases associated with a variety of cellular activities CO997_RS10655 SM00919 Malic enzyme, NAD binding domain CO997_RS10655 SM01274 CO997_RS10655 CO997_RS10685 SM00732 Likely ribonuclease with RNase H fold. CO997_RS10720 SM00382 ATPases associated with a variety of cellular activities CO997_RS10725 SM00850 LytTr DNA-binding domain CO997_RS10745 SM00881 CoA binding domain CO997_RS10750 SM00382 ATPases associated with a variety of cellular activities CO997_RS10790 SM00342 helix_turn_helix, arabinose operon control protein CO997_RS10840 SM00382 ATPases associated with a variety of cellular activities CO997_RS10845 SM00382 ATPases associated with a variety of cellular activities CO997_RS10855 SM00849 Metallo-beta-lactamase superfamily CO997_RS10865 SM00357 Cold shock protein domain CO997_RS10905 SM00644 CO997_RS10905 CO997_RS11080 SM00244 prohibitin homologues CO997_RS11100 SM00382 ATPases associated with a variety of cellular activities CO997_RS11140 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS11145 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS11150 SM00974 CO997_RS11150 CO997_RS11155 SM00857 Resolvase, N terminal domain CO997_RS11180 SM00881 CoA binding domain CO997_RS11185 SM00981 CO997_RS11185 CO997_RS11215 SM00870 CO997_RS11215 CO997_RS11300 SM00316 Ribosomal protein S1-like RNA-binding domain CO997_RS11400 SM00116 Domain in cystathionine beta-synthase and other proteins. CO997_RS11405 SM00849 Metallo-beta-lactamase superfamily CO997_RS11415 SM00849 Metallo-beta-lactamase superfamily CO997_RS11430 SM00382 ATPases associated with a variety of cellular activities CO997_RS11510 SM00382 ATPases associated with a variety of cellular activities CO997_RS11520 SM00382 ATPases associated with a variety of cellular activities CO997_RS11525 SM00382 ATPases associated with a variety of cellular activities CO997_RS11540 SM00851 MGS-like domain CO997_RS11545 SM00382 ATPases associated with a variety of cellular activities CO997_RS11555 SM00650 Ribosomal RNA adenine dimethylases CO997_RS11560 SM00493 CO997_RS11560 CO997_RS11605 SM00382 ATPases associated with a variety of cellular activities CO997_RS11610 SM00382 ATPases associated with a variety of cellular activities CO997_RS11660 SM00382 ATPases associated with a variety of cellular activities CO997_RS11660 SM00843 CO997_RS11660 CO997_RS11675 SM00062 Bacterial periplasmic substrate-binding proteins CO997_RS11675 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CO997_RS11680 SM00382 ATPases associated with a variety of cellular activities CO997_RS11755 SM00937 CO997_RS11755 CO997_RS11835 SM00382 ATPases associated with a variety of cellular activities CO997_RS11880 SM00382 ATPases associated with a variety of cellular activities CO997_RS11885 SM00382 ATPases associated with a variety of cellular activities CO997_RS11945 SM01007 Class II Aldolase and Adducin N-terminal domain CO997_RS11960 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS11970 SM00813 Alpha-L-arabinofuranosidase C-terminus CO997_RS11995 SM00813 Alpha-L-arabinofuranosidase C-terminus CO997_RS12000 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CO997_RS12030 SM00422 helix_turn_helix, mercury resistance CO997_RS12035 SM00354 helix_turn _helix lactose operon repressor CO997_RS12050 SM00883 Chaperonin 10 Kd subunit CO997_RS12070 SM00849 Metallo-beta-lactamase superfamily CO997_RS12085 SM00091 PAS domain CO997_RS12085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CO997_RS12085 SM00387 Histidine kinase-like ATPases CO997_RS12085 SM00388 His Kinase A (phosphoacceptor) domain CO997_RS12090 SM00448 cheY-homologous receiver domain CO997_RS12090 SM00862 Transcriptional regulatory protein, C terminal CO997_RS12130 SM00382 ATPases associated with a variety of cellular activities CO997_RS12150 SM00850 LytTr DNA-binding domain CO997_RS12215 SM00382 ATPases associated with a variety of cellular activities CO997_RS12220 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS12240 SM00899 CO997_RS12240 CO997_RS12275 SM00382 ATPases associated with a variety of cellular activities CO997_RS12305 SM00649 Ribosomal protein L11/L12 CO997_RS12330 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CO997_RS12330 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CO997_RS12345 SM00116 Domain in cystathionine beta-synthase and other proteins. CO997_RS12355 SM00046 Diacylglycerol kinase catalytic domain (presumed) CO997_RS12380 SM00421 helix_turn_helix, Lux Regulon CO997_RS12380 SM00448 cheY-homologous receiver domain CO997_RS12390 SM00382 ATPases associated with a variety of cellular activities CO997_RS12395 SM00855 Phosphoglycerate mutase family CO997_RS12415 SM00116 Domain in cystathionine beta-synthase and other proteins. CO997_RS12415 SM00924 MgtE intracellular N domain CO997_RS12430 SM00954 Region found in RelA / SpoT proteins CO997_RS12435 SM01118 CO997_RS12435 CO997_RS12475 SM00487 DEAD-like helicases superfamily CO997_RS12475 SM00490 helicase superfamily c-terminal domain CO997_RS12490 SM00563 Phosphate acyltransferases CO997_RS12500 SM00465 GIY-YIG type nucleases (URI domain) CO997_RS12545 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CO997_RS12545 SM00954 Region found in RelA / SpoT proteins CO997_RS12575 SM00382 ATPases associated with a variety of cellular activities CO997_RS12600 SM00382 ATPases associated with a variety of cellular activities CO997_RS12645 SM00382 ATPases associated with a variety of cellular activities CO997_RS12670 SM00382 ATPases associated with a variety of cellular activities CO997_RS12690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CO997_RS12740 SM00710 Parallel beta-helix repeats CO997_RS12775 SM00710 Parallel beta-helix repeats CO997_RS12810 SM00342 helix_turn_helix, arabinose operon control protein CO997_RS12815 SM00354 helix_turn _helix lactose operon repressor CO997_RS12825 SM00858 CO997_RS12825 CO997_RS12855 SM00382 ATPases associated with a variety of cellular activities CO997_RS12880 SM00872 Alpha mannosidase, middle domain CO997_RS12885 SM01149 CO997_RS12885 CO997_RS12890 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS12905 SM00342 helix_turn_helix, arabinose operon control protein CO997_RS12905 SM00448 cheY-homologous receiver domain CO997_RS12910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CO997_RS12945 SM00363 S4 RNA-binding domain CO997_RS13020 SM00422 helix_turn_helix, mercury resistance CO997_RS13025 SM00382 ATPases associated with a variety of cellular activities CO997_RS13030 SM00382 ATPases associated with a variety of cellular activities CO997_RS13050 SM00047 Lysozyme subfamily 2 CO997_RS13050 SM00257 Lysin motif CO997_RS13055 SM00014 Acid phosphatase homologues CO997_RS13060 SM00729 Elongator protein 3, MiaB family, Radical SAM CO997_RS13095 SM00644 CO997_RS13095 CO997_RS13110 SM00974 CO997_RS13110 CO997_RS13135 SM00382 ATPases associated with a variety of cellular activities CO997_RS13140 SM00382 ATPases associated with a variety of cellular activities CO997_RS13335 SM00382 ATPases associated with a variety of cellular activities CO997_RS13345 SM00977 TilS substrate C-terminal domain CO997_RS13350 SM00316 Ribosomal protein S1-like RNA-binding domain CO997_RS13360 SM00363 S4 RNA-binding domain CO997_RS13370 SM00487 DEAD-like helicases superfamily CO997_RS13370 SM00490 helicase superfamily c-terminal domain CO997_RS13370 SM00982 CO997_RS13370 CO997_RS13370 SM01058 CarD-like/TRCF domain CO997_RS13440 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CO997_RS13455 SM00220 Serine/Threonine protein kinases, catalytic domain CO997_RS13455 SM00740 CO997_RS13455 CO997_RS13460 SM00331 Sigma factor PP2C-like phosphatases CO997_RS13460 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CO997_RS13480 SM00487 DEAD-like helicases superfamily CO997_RS13480 SM00490 helicase superfamily c-terminal domain CO997_RS13485 SM01409 CO997_RS13485 CO997_RS13490 SM00072 Guanylate kinase homologues. CO997_RS13525 SM01400 CO997_RS13525 CO997_RS13545 SM00382 ATPases associated with a variety of cellular activities CO997_RS13570 SM00322 K homology RNA-binding domain CO997_RS13570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CO997_RS13575 SM00382 ATPases associated with a variety of cellular activities CO997_RS13580 SM00852 Probable molybdopterin binding domain CO997_RS13645 SM00967 RNA 2'-O ribose methyltransferase substrate binding CO997_RS13650 SM00535 Ribonuclease III family CO997_RS13655 SM00840 CO997_RS13655 CO997_RS13670 SM00670 Large family of predicted nucleotide-binding domains CO997_RS13675 SM00382 ATPases associated with a variety of cellular activities CO997_RS13735 SM00382 ATPases associated with a variety of cellular activities CO997_RS13750 SM00347 helix_turn_helix multiple antibiotic resistance protein CO997_RS13755 SM00047 Lysozyme subfamily 2 CO997_RS13775 SM01061 CAT RNA binding domain CO997_RS13795 SM00871 Bacterial transcription activator, effector binding domain CO997_RS13800 SM00342 helix_turn_helix, arabinose operon control protein CO997_RS13800 SM00871 Bacterial transcription activator, effector binding domain CO997_RS13825 SM00829 Enoylreductase CO997_RS13855 SM00382 ATPases associated with a variety of cellular activities CO997_RS13860 SM00534 ATPase domain of DNA mismatch repair MUTS family CO997_RS13865 SM00387 Histidine kinase-like ATPases CO997_RS13865 SM00388 His Kinase A (phosphoacceptor) domain CO997_RS13870 SM00448 cheY-homologous receiver domain CO997_RS13870 SM00862 Transcriptional regulatory protein, C terminal CO997_RS13880 SM00382 ATPases associated with a variety of cellular activities CO997_RS13920 SM00507 HNH nucleases CO997_RS13950 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS13960 SM00507 HNH nucleases CO997_RS14035 SM00047 Lysozyme subfamily 2 CO997_RS14055 SM00342 helix_turn_helix, arabinose operon control protein CO997_RS14100 SM00833 Cobalamin synthesis protein cobW C-terminal domain CO997_RS14125 SM01321 CO997_RS14125 CO997_RS14170 SM00382 ATPases associated with a variety of cellular activities CO997_RS14175 SM00382 ATPases associated with a variety of cellular activities CO997_RS14185 SM00382 ATPases associated with a variety of cellular activities CO997_RS14220 SM00382 ATPases associated with a variety of cellular activities CO997_RS14250 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS14250 SM00866 CO997_RS14250 CO997_RS14330 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS14500 SM00642 Alpha-amylase domain CO997_RS14505 SM00354 helix_turn _helix lactose operon repressor CO997_RS14510 SM00663 RNA polymerase I subunit A N-terminus CO997_RS14535 SM00382 ATPases associated with a variety of cellular activities CO997_RS14590 SM00900 CO997_RS14590 CO997_RS14635 SM00382 ATPases associated with a variety of cellular activities CO997_RS14635 SM01086 C-terminal, D2-small domain, of ClpB protein CO997_RS14710 SM00448 cheY-homologous receiver domain CO997_RS14710 SM00862 Transcriptional regulatory protein, C terminal CO997_RS14715 SM00387 Histidine kinase-like ATPases CO997_RS14715 SM00388 His Kinase A (phosphoacceptor) domain CO997_RS14730 SM00116 Domain in cystathionine beta-synthase and other proteins. CO997_RS14730 SM01240 CO997_RS14730 CO997_RS14760 SM00470 ParB-like nuclease domain CO997_RS14775 SM01228 CO997_RS14775 CO997_RS14790 SM00322 K homology RNA-binding domain CO997_RS14790 SM00393 Putative single-stranded nucleic acids-binding domain CO997_RS14790 SM01245 CO997_RS14790 CO997_RS14845 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CO997_RS14845 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CO997_RS14845 SM00493 CO997_RS14845 CO997_RS14890 SM01321 CO997_RS14890 CO997_RS14900 SM00966 SpoVT / AbrB like domain CO997_RS14910 SM00857 Resolvase, N terminal domain CO997_RS15145 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CO997_RS15145 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CO997_RS15145 SM00493 CO997_RS15145 CO997_RS15360 SM00640 Glycosyl hydrolases family 32 CO997_RS15365 SM00354 helix_turn _helix lactose operon repressor CO997_RS15375 SM01321 CO997_RS15375 CO997_RS15485 SM01133 CO997_RS15485 CO997_RS15495 SM00345 helix_turn_helix gluconate operon transcriptional repressor CO997_RS15495 SM00866 CO997_RS15495 CO997_RS15640 SM00857 Resolvase, N terminal domain CO997_RS15655 SM00857 Resolvase, N terminal domain CO997_RS15755 SM00764 Citrate lyase ligase C-terminal domain CO997_RS15765 SM00919 Malic enzyme, NAD binding domain CO997_RS15765 SM01274 CO997_RS15765 CO997_RS15815 SM00640 Glycosyl hydrolases family 32 CO997_RS15835 SM00354 helix_turn _helix lactose operon repressor CO997_RS15850 SM00857 Resolvase, N terminal domain CO997_RS15875 SM00479 CO997_RS15875 CO997_RS15875 SM00497 Intron encoded nuclease repeat motif CO997_RS15885 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS15915 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS15945 SM01321 CO997_RS15945 CO997_RS15980 SM00530 Helix-turn-helix XRE-family like proteins CO997_RS15995 SM01321 CO997_RS15995 CO997_RS16260 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CO997_RS16260 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CO997_RS16260 SM00493 CO997_RS16260 CO997_RS16485 SM00857 Resolvase, N terminal domain CO997_RS16500 SM00857 Resolvase, N terminal domain