CNX66_RS00005	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00005	SM00760	Bacterial dnaA protein helix-turn-helix domain
CNX66_RS00010	SM00480	DNA polymerase III beta subunit
CNX66_RS00025	SM00387	Histidine kinase-like ATPases
CNX66_RS00025	SM00433	TopoisomeraseII
CNX66_RS00030	SM00434	DNA Topoisomerase IV
CNX66_RS00050	SM00267	diguanylate cyclase
CNX66_RS00070	SM00788	Adenylosuccinate synthetase
CNX66_RS00080	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00160	SM00420	helix_turn_helix, Deoxyribose operon repressor
CNX66_RS00160	SM01134	CNX66_RS00160
CNX66_RS00200	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS00205	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
CNX66_RS00210	SM01133	CNX66_RS00210
CNX66_RS00225	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00255	SM00855	Phosphoglycerate mutase family
CNX66_RS00260	SM00857	Resolvase, N terminal domain
CNX66_RS00280	SM00838	Elongation factor G C-terminus
CNX66_RS00280	SM00889	Elongation factor G, domain IV
CNX66_RS00290	SM01403	CNX66_RS00290
CNX66_RS00310	SM01382	CNX66_RS00310
CNX66_RS00310	SM01383	CNX66_RS00310
CNX66_RS00325	SM00322	K homology RNA-binding domain
CNX66_RS00345	SM01374	CNX66_RS00345
CNX66_RS00350	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CNX66_RS00405	SM00316	Ribosomal protein S1-like RNA-binding domain
CNX66_RS00425	SM00662	RNA polymerases D
CNX66_RS00435	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00440	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00475	SM01120	CNX66_RS00475
CNX66_RS00475	SM01121	CNX66_RS00475
CNX66_RS00480	SM00487	DEAD-like helicases superfamily
CNX66_RS00480	SM00490	helicase superfamily c-terminal domain
CNX66_RS00495	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00500	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00525	SM00358	Double-stranded RNA binding motif
CNX66_RS00525	SM00535	Ribonuclease III family
CNX66_RS00530	SM00968	SMC proteins Flexible Hinge Domain
CNX66_RS00565	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00645	SM00363	S4 RNA-binding domain
CNX66_RS00645	SM01390	CNX66_RS00645
CNX66_RS00680	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CNX66_RS00680	SM00534	ATPase domain of DNA mismatch repair MUTS family
CNX66_RS00685	SM00853	MutL C terminal dimerisation domain
CNX66_RS00685	SM01340	CNX66_RS00685
CNX66_RS00700	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS00700	SM00866	CNX66_RS00700
CNX66_RS00710	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CNX66_RS00715	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00725	SM00226	Low molecular weight phosphatase family
CNX66_RS00755	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS00760	SM00062	Bacterial periplasmic substrate-binding proteins
CNX66_RS00780	SM00830	Chorismate mutase type II
CNX66_RS00780	SM01266	CNX66_RS00780
CNX66_RS00800	SM01387	CNX66_RS00800
CNX66_RS00805	SM00316	Ribosomal protein S1-like RNA-binding domain
CNX66_RS00805	SM00322	K homology RNA-binding domain
CNX66_RS00825	SM00116	Domain in cystathionine beta-synthase and other proteins.
CNX66_RS00825	SM01091	Transporter associated domain
CNX66_RS00900	SM00487	DEAD-like helicases superfamily
CNX66_RS00900	SM00490	helicase superfamily c-terminal domain
CNX66_RS00910	SM01005	Alanine racemase, C-terminal domain
CNX66_RS00930	SM00829	Enoylreductase
CNX66_RS00990	SM00116	Domain in cystathionine beta-synthase and other proteins.
CNX66_RS00990	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS01015	SM01323	CNX66_RS01015
CNX66_RS01055	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS01060	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS01075	SM01007	Class II Aldolase and Adducin N-terminal domain
CNX66_RS01090	SM00346	helix_turn_helix isocitrate lyase regulation
CNX66_RS01180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS01180	SM00895	CNX66_RS01180
CNX66_RS01235	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CNX66_RS01340	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS01340	SM00895	CNX66_RS01340
CNX66_RS01440	SM00831	Cation transporter/ATPase, N-terminus
CNX66_RS01465	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CNX66_RS01550	SM00347	helix_turn_helix multiple antibiotic resistance protein
CNX66_RS01560	SM00873	B3/4 domain
CNX66_RS01580	SM00642	Alpha-amylase domain
CNX66_RS01615	SM00347	helix_turn_helix multiple antibiotic resistance protein
CNX66_RS01680	SM00450	Rhodanese Homology Domain
CNX66_RS01685	SM00450	Rhodanese Homology Domain
CNX66_RS01725	SM01120	CNX66_RS01725
CNX66_RS01740	SM00100	Cyclic nucleotide-monophosphate binding domain
CNX66_RS01740	SM00419	helix_turn_helix, cAMP Regulatory protein
CNX66_RS01750	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS01765	SM00363	S4 RNA-binding domain
CNX66_RS01785	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS01845	SM00422	helix_turn_helix, mercury resistance
CNX66_RS01895	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS01900	SM00448	cheY-homologous receiver domain
CNX66_RS01900	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS01905	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CNX66_RS01905	SM00387	Histidine kinase-like ATPases
CNX66_RS01905	SM00388	His Kinase A (phosphoacceptor) domain
CNX66_RS01940	SM00244	prohibitin homologues
CNX66_RS01950	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS01965	SM00047	Lysozyme subfamily 2
CNX66_RS01985	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS01995	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS02010	SM00642	Alpha-amylase domain
CNX66_RS02030	SM00448	cheY-homologous receiver domain
CNX66_RS02030	SM00850	LytTr DNA-binding domain
CNX66_RS02040	SM00793	Accessory gene regulator B
CNX66_RS02130	SM00841	Elongation factor P, C-terminal
CNX66_RS02130	SM01185	CNX66_RS02130
CNX66_RS02145	SM01130	CNX66_RS02145
CNX66_RS02160	SM00859	Semialdehyde dehydrogenase, NAD binding domain
CNX66_RS02220	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS02240	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS02260	SM00567	E-Z type HEAT repeats
CNX66_RS02265	SM00257	Lysin motif
CNX66_RS02410	SM00014	Acid phosphatase homologues
CNX66_RS02420	SM00327	von Willebrand factor (vWF) type A domain
CNX66_RS02440	SM00448	cheY-homologous receiver domain
CNX66_RS02440	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS02445	SM00387	Histidine kinase-like ATPases
CNX66_RS02490	SM00710	Parallel beta-helix repeats
CNX66_RS02510	SM01400	CNX66_RS02510
CNX66_RS02565	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CNX66_RS02565	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CNX66_RS02565	SM00493	CNX66_RS02565
CNX66_RS02620	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS02620	SM00930	CNX66_RS02620
CNX66_RS02635	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS02665	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS02760	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS02765	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS02795	SM00487	DEAD-like helicases superfamily
CNX66_RS02815	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS02825	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS02845	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CNX66_RS02875	SM00448	cheY-homologous receiver domain
CNX66_RS02875	SM00850	LytTr DNA-binding domain
CNX66_RS02920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS02920	SM00866	CNX66_RS02920
CNX66_RS02965	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS03000	SM00562	CNX66_RS03000
CNX66_RS03005	SM00831	Cation transporter/ATPase, N-terminus
CNX66_RS03085	SM00855	Phosphoglycerate mutase family
CNX66_RS03120	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS03210	SM00479	CNX66_RS03210
CNX66_RS03260	SM00829	Enoylreductase
CNX66_RS03285	SM00829	Enoylreductase
CNX66_RS03290	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS03295	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS03315	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS03370	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS03410	SM00422	helix_turn_helix, mercury resistance
CNX66_RS03415	SM01230	CNX66_RS03415
CNX66_RS03450	SM00357	Cold shock protein domain
CNX66_RS03450	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS03450	SM00959	Rho termination factor, N-terminal domain
CNX66_RS03480	SM00420	helix_turn_helix, Deoxyribose operon repressor
CNX66_RS03480	SM01134	CNX66_RS03480
CNX66_RS03500	SM00419	helix_turn_helix, cAMP Regulatory protein
CNX66_RS03525	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS03535	SM00493	CNX66_RS03535
CNX66_RS03585	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS03635	SM00849	Metallo-beta-lactamase superfamily
CNX66_RS03675	SM00986	Uracil DNA glycosylase superfamily
CNX66_RS03675	SM00987	UreE urease accessory protein, C-terminal domain 
CNX66_RS03710	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS03720	SM01040	BRO family, N-terminal domain
CNX66_RS03755	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS03815	SM00507	HNH nucleases
CNX66_RS03930	SM00644	CNX66_RS03930
CNX66_RS03995	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS04110	SM00740	CNX66_RS04110
CNX66_RS04135	SM00842	Cell division protein FtsA
CNX66_RS04160	SM00363	S4 RNA-binding domain
CNX66_RS04180	SM00529	Helix-turn-helix diphteria tox regulatory element
CNX66_RS04180	SM00899	CNX66_RS04180
CNX66_RS04200	SM00487	DEAD-like helicases superfamily
CNX66_RS04200	SM00490	helicase superfamily c-terminal domain
CNX66_RS04205	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS04275	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS04280	SM01040	BRO family, N-terminal domain
CNX66_RS04410	SM00507	HNH nucleases
CNX66_RS04535	SM00644	CNX66_RS04535
CNX66_RS04650	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS04710	SM00858	CNX66_RS04710
CNX66_RS04800	SM00387	Histidine kinase-like ATPases
CNX66_RS04805	SM00421	helix_turn_helix, Lux Regulon
CNX66_RS04805	SM00448	cheY-homologous receiver domain
CNX66_RS04850	SM00357	Cold shock protein domain
CNX66_RS04880	SM00478	endonuclease III
CNX66_RS04880	SM00525	CNX66_RS04880
CNX66_RS04900	SM00116	Domain in cystathionine beta-synthase and other proteins.
CNX66_RS04900	SM01091	Transporter associated domain
CNX66_RS04935	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS04935	SM01086	C-terminal, D2-small domain, of ClpB protein
CNX66_RS04970	SM00465	GIY-YIG type nucleases (URI domain)
CNX66_RS04975	SM00347	helix_turn_helix multiple antibiotic resistance protein
CNX66_RS04990	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
CNX66_RS04995	SM00822	CNX66_RS04995
CNX66_RS05000	SM00825	Beta-ketoacyl synthase
CNX66_RS05015	SM00878	Biotin carboxylase C-terminal domain
CNX66_RS05040	SM01103	CNX66_RS05040
CNX66_RS05050	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CNX66_RS05100	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CNX66_RS05140	SM00481	DNA polymerase alpha chain like domain
CNX66_RS05175	SM01350	CNX66_RS05175
CNX66_RS05180	SM00448	cheY-homologous receiver domain
CNX66_RS05180	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS05185	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CNX66_RS05185	SM00387	Histidine kinase-like ATPases
CNX66_RS05185	SM00388	His Kinase A (phosphoacceptor) domain
CNX66_RS05295	SM01061	CAT RNA binding domain
CNX66_RS05340	SM00028	Tetratricopeptide repeats
CNX66_RS05340	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS05345	SM00420	helix_turn_helix, Deoxyribose operon repressor
CNX66_RS05345	SM01134	CNX66_RS05345
CNX66_RS05370	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CNX66_RS05380	SM01007	Class II Aldolase and Adducin N-terminal domain
CNX66_RS05440	SM01007	Class II Aldolase and Adducin N-terminal domain
CNX66_RS05460	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS05460	SM00866	CNX66_RS05460
CNX66_RS05505	SM00155	Phospholipase D. Active site motifs.
CNX66_RS05510	SM00831	Cation transporter/ATPase, N-terminus
CNX66_RS05585	SM00400	zinc finger
CNX66_RS05585	SM00493	CNX66_RS05585
CNX66_RS05635	SM00363	S4 RNA-binding domain
CNX66_RS05670	SM00487	DEAD-like helicases superfamily
CNX66_RS05670	SM00490	helicase superfamily c-terminal domain
CNX66_RS05675	SM00257	Lysin motif
CNX66_RS05685	SM00316	Ribosomal protein S1-like RNA-binding domain
CNX66_RS05695	SM00411	bacterial (prokaryotic) histone like domain
CNX66_RS05710	SM00028	Tetratricopeptide repeats
CNX66_RS05715	SM00914	CNX66_RS05715
CNX66_RS05755	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS05830	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CNX66_RS05830	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CNX66_RS05830	SM00493	CNX66_RS05830
CNX66_RS05850	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS05850	SM01086	C-terminal, D2-small domain, of ClpB protein
CNX66_RS05865	SM01207	CNX66_RS05865
CNX66_RS05870	SM00881	CoA binding domain
CNX66_RS05875	SM00387	Histidine kinase-like ATPases
CNX66_RS05875	SM00433	TopoisomeraseII
CNX66_RS05880	SM00434	DNA Topoisomerase IV
CNX66_RS05895	SM01131	CNX66_RS05895
CNX66_RS05965	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS05985	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS05995	SM00257	Lysin motif
CNX66_RS06050	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS06070	SM00448	cheY-homologous receiver domain
CNX66_RS06090	SM00244	prohibitin homologues
CNX66_RS06125	SM00047	Lysozyme subfamily 2
CNX66_RS06175	SM01001	AIR carboxylase
CNX66_RS06185	SM00998	Adenylosuccinate lyase C-terminus
CNX66_RS06205	SM01211	CNX66_RS06205
CNX66_RS06230	SM00798	AICARFT/IMPCHase bienzyme
CNX66_RS06230	SM00851	MGS-like domain
CNX66_RS06235	SM01209	CNX66_RS06235
CNX66_RS06235	SM01210	CNX66_RS06235
CNX66_RS06245	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS06245	SM00448	cheY-homologous receiver domain
CNX66_RS06250	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CNX66_RS06250	SM00387	Histidine kinase-like ATPases
CNX66_RS06265	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS06285	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS06300	SM00861	Transketolase, pyrimidine binding domain
CNX66_RS06325	SM00838	Elongation factor G C-terminus
CNX66_RS06345	SM00878	Biotin carboxylase C-terminal domain
CNX66_RS06380	SM00278	Helix-hairpin-helix DNA-binding motif class 1
CNX66_RS06400	SM00849	Metallo-beta-lactamase superfamily
CNX66_RS06435	SM00855	Phosphoglycerate mutase family
CNX66_RS06440	SM00849	Metallo-beta-lactamase superfamily
CNX66_RS06445	SM00487	DEAD-like helicases superfamily
CNX66_RS06445	SM00488	CNX66_RS06445
CNX66_RS06445	SM00491	CNX66_RS06445
CNX66_RS06475	SM00257	Lysin motif
CNX66_RS06585	SM00873	B3/4 domain
CNX66_RS06585	SM00874	tRNA synthetase B5 domain
CNX66_RS06585	SM00896	Ferredoxin-fold anticodon binding domain
CNX66_RS06595	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS06600	SM00062	Bacterial periplasmic substrate-binding proteins
CNX66_RS06600	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CNX66_RS06630	SM00116	Domain in cystathionine beta-synthase and other proteins.
CNX66_RS06680	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CNX66_RS06735	SM00861	Transketolase, pyrimidine binding domain
CNX66_RS06745	SM00047	Lysozyme subfamily 2
CNX66_RS06745	SM00257	Lysin motif
CNX66_RS06770	SM00347	helix_turn_helix multiple antibiotic resistance protein
CNX66_RS06785	SM00478	endonuclease III
CNX66_RS06785	SM00525	CNX66_RS06785
CNX66_RS06830	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CNX66_RS06870	SM00487	DEAD-like helicases superfamily
CNX66_RS06870	SM00490	helicase superfamily c-terminal domain
CNX66_RS06885	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
CNX66_RS06910	SM00357	Cold shock protein domain
CNX66_RS06935	SM00363	S4 RNA-binding domain
CNX66_RS06960	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
CNX66_RS06965	SM00851	MGS-like domain
CNX66_RS06965	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CNX66_RS06965	SM01209	CNX66_RS06965
CNX66_RS06980	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
CNX66_RS07000	SM01057	Eukaryotic-type carbonic anhydrase
CNX66_RS07030	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS07050	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CNX66_RS07050	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CNX66_RS07050	SM00493	CNX66_RS07050
CNX66_RS07075	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS07135	SM00327	von Willebrand factor (vWF) type A domain
CNX66_RS07150	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS07160	SM00448	cheY-homologous receiver domain
CNX66_RS07160	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS07165	SM00387	Histidine kinase-like ATPases
CNX66_RS07165	SM00388	His Kinase A (phosphoacceptor) domain
CNX66_RS07210	SM00642	Alpha-amylase domain
CNX66_RS07220	SM00327	von Willebrand factor (vWF) type A domain
CNX66_RS07295	SM00072	Guanylate kinase homologues.
CNX66_RS07320	SM00062	Bacterial periplasmic substrate-binding proteins
CNX66_RS07365	SM00642	Alpha-amylase domain
CNX66_RS07385	SM00347	helix_turn_helix multiple antibiotic resistance protein
CNX66_RS07415	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS07415	SM00895	CNX66_RS07415
CNX66_RS07465	SM00903	Flavin reductase like domain
CNX66_RS07475	SM01022	CNX66_RS07475
CNX66_RS07480	SM00861	Transketolase, pyrimidine binding domain
CNX66_RS07500	SM00857	Resolvase, N terminal domain
CNX66_RS07520	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS07600	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS07710	SM00357	Cold shock protein domain
CNX66_RS07770	SM01350	CNX66_RS07770
CNX66_RS07975	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS07975	SM00895	CNX66_RS07975
CNX66_RS08120	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS08125	SM00838	Elongation factor G C-terminus
CNX66_RS08145	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS08145	SM01086	C-terminal, D2-small domain, of ClpB protein
CNX66_RS08160	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CNX66_RS08210	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
CNX66_RS08210	SM01232	CNX66_RS08210
CNX66_RS08215	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
CNX66_RS08215	SM00474	3'-5' exonuclease
CNX66_RS08215	SM00475	5'-3' exonuclease
CNX66_RS08215	SM00482	DNA polymerase A domain
CNX66_RS08240	SM00731	SprT homologues.
CNX66_RS08245	SM00316	Ribosomal protein S1-like RNA-binding domain
CNX66_RS08245	SM00732	Likely ribonuclease with RNase H fold.
CNX66_RS08255	SM00450	Rhodanese Homology Domain
CNX66_RS08300	SM00938	Nitrogen regulatory protein P-II
CNX66_RS08335	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS08385	SM01038	Beta galactosidase small chain
CNX66_RS08400	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS08425	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CNX66_RS08430	SM00845	GatB domain
CNX66_RS08445	SM00292	breast cancer carboxy-terminal domain
CNX66_RS08445	SM00532	Ligase N family
CNX66_RS08470	SM00420	helix_turn_helix, Deoxyribose operon repressor
CNX66_RS08470	SM01134	CNX66_RS08470
CNX66_RS08495	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS08495	SM00994	ClpX C4-type zinc finger
CNX66_RS08495	SM01086	C-terminal, D2-small domain, of ClpB protein
CNX66_RS08545	SM00890	Domain of unknown function
CNX66_RS08625	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS08630	SM00487	DEAD-like helicases superfamily
CNX66_RS08630	SM00490	helicase superfamily c-terminal domain
CNX66_RS08635	SM00062	Bacterial periplasmic substrate-binding proteins
CNX66_RS08640	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS08650	SM00271	DnaJ molecular chaperone homology domain
CNX66_RS08670	SM00729	Elongator protein 3, MiaB family, Radical SAM
CNX66_RS08720	SM00904	Riboflavin kinase
CNX66_RS08760	SM00316	Ribosomal protein S1-like RNA-binding domain
CNX66_RS08760	SM00322	K homology RNA-binding domain
CNX66_RS08770	SM00479	CNX66_RS08770
CNX66_RS08770	SM00481	DNA polymerase alpha chain like domain
CNX66_RS08780	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
CNX66_RS08830	SM00836	DALR anticodon binding domain
CNX66_RS08830	SM01016	Arginyl tRNA synthetase N terminal dom
CNX66_RS08875	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS08905	SM00450	Rhodanese Homology Domain
CNX66_RS09040	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
CNX66_RS09085	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CNX66_RS09085	SM00387	Histidine kinase-like ATPases
CNX66_RS09085	SM00388	His Kinase A (phosphoacceptor) domain
CNX66_RS09090	SM00448	cheY-homologous receiver domain
CNX66_RS09090	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS09240	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS09240	SM00962	SRP54-type protein, GTPase domain
CNX66_RS09240	SM00963	SRP54-type protein, helical bundle domain
CNX66_RS09255	SM00448	cheY-homologous receiver domain
CNX66_RS09255	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS09260	SM00387	Histidine kinase-like ATPases
CNX66_RS09260	SM00388	His Kinase A (phosphoacceptor) domain
CNX66_RS09445	SM00479	CNX66_RS09445
CNX66_RS09445	SM00491	CNX66_RS09445
CNX66_RS09450	SM00357	Cold shock protein domain
CNX66_RS09475	SM00936	Penicillin-binding protein 5, C-terminal domain 
CNX66_RS09505	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CNX66_RS09510	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CNX66_RS09750	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CNX66_RS09755	SM00322	K homology RNA-binding domain
CNX66_RS09790	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
CNX66_RS09830	SM01061	CAT RNA binding domain
CNX66_RS09835	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS09840	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS09860	SM00518	AP endonuclease family 2
CNX66_RS09875	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS09945	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS09950	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS09970	SM00155	Phospholipase D. Active site motifs.
CNX66_RS09980	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS09990	SM00957	SecA DEAD-like domain
CNX66_RS09990	SM00958	SecA preprotein cross-linking domain
CNX66_RS10005	SM00487	DEAD-like helicases superfamily
CNX66_RS10005	SM00490	helicase superfamily c-terminal domain
CNX66_RS10025	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS10025	SM00866	CNX66_RS10025
CNX66_RS10065	SM01234	CNX66_RS10065
CNX66_RS10090	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS10130	SM00316	Ribosomal protein S1-like RNA-binding domain
CNX66_RS10130	SM00955	CNX66_RS10130
CNX66_RS10175	SM01192	CNX66_RS10175
CNX66_RS10175	SM01193	CNX66_RS10175
CNX66_RS10190	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
CNX66_RS10245	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CNX66_RS10275	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS10345	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS10360	SM00463	Small MutS-related domain
CNX66_RS10360	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
CNX66_RS10360	SM00534	ATPase domain of DNA mismatch repair MUTS family
CNX66_RS10380	SM00646	CNX66_RS10380
CNX66_RS10390	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS10455	SM00919	Malic enzyme, NAD binding domain
CNX66_RS10455	SM01274	CNX66_RS10455
CNX66_RS10480	SM00732	Likely ribonuclease with RNase H fold.
CNX66_RS10515	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS10520	SM00850	LytTr DNA-binding domain
CNX66_RS10540	SM00881	CoA binding domain
CNX66_RS10545	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS10585	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS10635	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS10640	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS10650	SM00849	Metallo-beta-lactamase superfamily
CNX66_RS10660	SM00357	Cold shock protein domain
CNX66_RS10685	SM00881	CoA binding domain
CNX66_RS10695	SM00981	CNX66_RS10695
CNX66_RS10725	SM00870	CNX66_RS10725
CNX66_RS10815	SM00316	Ribosomal protein S1-like RNA-binding domain
CNX66_RS10930	SM00116	Domain in cystathionine beta-synthase and other proteins.
CNX66_RS10935	SM00849	Metallo-beta-lactamase superfamily
CNX66_RS10945	SM00849	Metallo-beta-lactamase superfamily
CNX66_RS10960	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11030	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11040	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11045	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11055	SM00851	MGS-like domain
CNX66_RS11060	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11070	SM00650	Ribosomal RNA adenine dimethylases
CNX66_RS11075	SM00493	CNX66_RS11075
CNX66_RS11120	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11125	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11175	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11175	SM00843	CNX66_RS11175
CNX66_RS11190	SM00062	Bacterial periplasmic substrate-binding proteins
CNX66_RS11190	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
CNX66_RS11195	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11270	SM00937	CNX66_RS11270
CNX66_RS11345	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11390	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11395	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11405	SM00450	Rhodanese Homology Domain
CNX66_RS11460	SM01007	Class II Aldolase and Adducin N-terminal domain
CNX66_RS11475	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS11485	SM00813	Alpha-L-arabinofuranosidase C-terminus
CNX66_RS11510	SM00813	Alpha-L-arabinofuranosidase C-terminus
CNX66_RS11540	SM00422	helix_turn_helix, mercury resistance
CNX66_RS11545	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS11560	SM00883	Chaperonin 10 Kd subunit
CNX66_RS11580	SM00849	Metallo-beta-lactamase superfamily
CNX66_RS11595	SM00091	PAS domain
CNX66_RS11595	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CNX66_RS11595	SM00387	Histidine kinase-like ATPases
CNX66_RS11595	SM00388	His Kinase A (phosphoacceptor) domain
CNX66_RS11600	SM00448	cheY-homologous receiver domain
CNX66_RS11600	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS11645	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11665	SM00448	cheY-homologous receiver domain
CNX66_RS11665	SM00850	LytTr DNA-binding domain
CNX66_RS11700	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11705	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS11725	SM00899	CNX66_RS11725
CNX66_RS11760	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11790	SM00649	Ribosomal protein L11/L12
CNX66_RS11815	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
CNX66_RS11815	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
CNX66_RS11830	SM00116	Domain in cystathionine beta-synthase and other proteins.
CNX66_RS11840	SM00046	Diacylglycerol kinase catalytic domain (presumed)
CNX66_RS11865	SM00421	helix_turn_helix, Lux Regulon
CNX66_RS11865	SM00448	cheY-homologous receiver domain
CNX66_RS11875	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS11880	SM00855	Phosphoglycerate mutase family
CNX66_RS11900	SM00116	Domain in cystathionine beta-synthase and other proteins.
CNX66_RS11900	SM00924	MgtE intracellular N domain
CNX66_RS11915	SM00954	Region found in RelA / SpoT proteins
CNX66_RS11960	SM00487	DEAD-like helicases superfamily
CNX66_RS11960	SM00490	helicase superfamily c-terminal domain
CNX66_RS11975	SM00563	Phosphate acyltransferases
CNX66_RS11985	SM00465	GIY-YIG type nucleases (URI domain)
CNX66_RS12035	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CNX66_RS12035	SM00954	Region found in RelA / SpoT proteins
CNX66_RS12065	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12090	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12135	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12160	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12180	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
CNX66_RS12230	SM00710	Parallel beta-helix repeats
CNX66_RS12265	SM00710	Parallel beta-helix repeats
CNX66_RS12300	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS12305	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS12315	SM00858	CNX66_RS12315
CNX66_RS12340	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12365	SM00872	Alpha mannosidase, middle domain
CNX66_RS12370	SM01149	CNX66_RS12370
CNX66_RS12375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS12385	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS12385	SM00448	cheY-homologous receiver domain
CNX66_RS12390	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
CNX66_RS12425	SM00363	S4 RNA-binding domain
CNX66_RS12500	SM00422	helix_turn_helix, mercury resistance
CNX66_RS12505	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12510	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12530	SM00047	Lysozyme subfamily 2
CNX66_RS12530	SM00257	Lysin motif
CNX66_RS12535	SM00014	Acid phosphatase homologues
CNX66_RS12540	SM00729	Elongator protein 3, MiaB family, Radical SAM
CNX66_RS12550	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12555	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12750	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12760	SM00977	TilS substrate C-terminal domain
CNX66_RS12765	SM00316	Ribosomal protein S1-like RNA-binding domain
CNX66_RS12775	SM00363	S4 RNA-binding domain
CNX66_RS12785	SM00487	DEAD-like helicases superfamily
CNX66_RS12785	SM00490	helicase superfamily c-terminal domain
CNX66_RS12785	SM00982	CNX66_RS12785
CNX66_RS12785	SM01058	CarD-like/TRCF domain
CNX66_RS12840	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
CNX66_RS12855	SM00220	Serine/Threonine protein kinases, catalytic domain
CNX66_RS12855	SM00740	CNX66_RS12855
CNX66_RS12860	SM00331	Sigma factor PP2C-like phosphatases
CNX66_RS12860	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
CNX66_RS12880	SM00487	DEAD-like helicases superfamily
CNX66_RS12880	SM00490	helicase superfamily c-terminal domain
CNX66_RS12885	SM01409	CNX66_RS12885
CNX66_RS12890	SM00072	Guanylate kinase homologues.
CNX66_RS12925	SM01400	CNX66_RS12925
CNX66_RS12945	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12975	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS12980	SM00852	Probable molybdopterin binding domain
CNX66_RS13045	SM00967	RNA 2'-O ribose methyltransferase substrate binding
CNX66_RS13050	SM00535	Ribonuclease III family
CNX66_RS13070	SM00670	Large family of predicted nucleotide-binding domains
CNX66_RS13075	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS13130	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS13145	SM00347	helix_turn_helix multiple antibiotic resistance protein
CNX66_RS13150	SM00047	Lysozyme subfamily 2
CNX66_RS13170	SM01061	CAT RNA binding domain
CNX66_RS13190	SM00871	Bacterial transcription activator, effector binding domain
CNX66_RS13195	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS13195	SM00871	Bacterial transcription activator, effector binding domain
CNX66_RS13220	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS13220	SM00866	CNX66_RS13220
CNX66_RS13240	SM00829	Enoylreductase
CNX66_RS13260	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS13270	SM00534	ATPase domain of DNA mismatch repair MUTS family
CNX66_RS13275	SM00872	Alpha mannosidase, middle domain
CNX66_RS13300	SM00387	Histidine kinase-like ATPases
CNX66_RS13300	SM00388	His Kinase A (phosphoacceptor) domain
CNX66_RS13305	SM00448	cheY-homologous receiver domain
CNX66_RS13305	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS13315	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS13370	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS13380	SM00507	HNH nucleases
CNX66_RS13445	SM00047	Lysozyme subfamily 2
CNX66_RS13465	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS13510	SM00833	Cobalamin synthesis protein cobW C-terminal domain
CNX66_RS13570	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS13580	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS13610	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS13700	SM00642	Alpha-amylase domain
CNX66_RS13705	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS13710	SM00663	RNA polymerase I subunit A N-terminus
CNX66_RS13735	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS13780	SM00900	CNX66_RS13780
CNX66_RS13815	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS13815	SM01086	C-terminal, D2-small domain, of ClpB protein
CNX66_RS13890	SM00448	cheY-homologous receiver domain
CNX66_RS13890	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS13895	SM00387	Histidine kinase-like ATPases
CNX66_RS13895	SM00388	His Kinase A (phosphoacceptor) domain
CNX66_RS13910	SM00116	Domain in cystathionine beta-synthase and other proteins.
CNX66_RS13910	SM01240	CNX66_RS13910
CNX66_RS13930	SM00470	ParB-like nuclease domain
CNX66_RS13945	SM01228	CNX66_RS13945
CNX66_RS13960	SM00322	K homology RNA-binding domain
CNX66_RS13960	SM00393	Putative single-stranded nucleic acids-binding domain
CNX66_RS13960	SM01245	CNX66_RS13960
CNX66_RS14105	SM00507	HNH nucleases
CNX66_RS14355	SM00640	Glycosyl hydrolases family 32
CNX66_RS14360	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS14370	SM01321	CNX66_RS14370
CNX66_RS14460	SM01133	CNX66_RS14460
CNX66_RS14470	SM00345	helix_turn_helix gluconate operon transcriptional repressor
CNX66_RS14470	SM00866	CNX66_RS14470
CNX66_RS14630	SM00857	Resolvase, N terminal domain
CNX66_RS14645	SM00857	Resolvase, N terminal domain
CNX66_RS14675	SM00388	His Kinase A (phosphoacceptor) domain
CNX66_RS14680	SM00448	cheY-homologous receiver domain
CNX66_RS14680	SM00862	Transcriptional regulatory protein, C terminal
CNX66_RS14705	SM00354	helix_turn _helix lactose operon repressor
CNX66_RS14710	SM00640	Glycosyl hydrolases family 32
CNX66_RS14780	SM01038	Beta galactosidase small chain
CNX66_RS14815	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS14815	SM00448	cheY-homologous receiver domain
CNX66_RS14845	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS14890	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS14985	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS15010	SM01321	CNX66_RS15010
CNX66_RS15170	SM00507	HNH nucleases
CNX66_RS15250	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
CNX66_RS15250	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
CNX66_RS15250	SM00493	CNX66_RS15250
CNX66_RS15330	SM00857	Resolvase, N terminal domain
CNX66_RS15345	SM00857	Resolvase, N terminal domain
CNX66_RS15425	SM01321	CNX66_RS15425
CNX66_RS15460	SM00342	helix_turn_helix, arabinose operon control protein
CNX66_RS15465	SM00640	Glycosyl hydrolases family 32
CNX66_RS15480	SM01321	CNX66_RS15480
CNX66_RS15575	SM00382	ATPases associated with a variety of cellular activities
CNX66_RS15590	SM00530	Helix-turn-helix XRE-family like proteins 
CNX66_RS15645	SM00650	Ribosomal RNA adenine dimethylases
CNX66_RS15750	SM00857	Resolvase, N terminal domain
CNX66_RS15800	SM00382	ATPases associated with a variety of cellular activities
