locus-tag class description EBB55_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix EBB55_RS00005 PF00308 Bacterial dnaA protein EBB55_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain EBB55_RS00010 PF02767 DNA polymerase III beta subunit, central domain EBB55_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain EBB55_RS00020 PF02463 RecF/RecN/SMC N terminal domain EBB55_RS00025 PF00204 DNA gyrase B EBB55_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS00025 PF01751 Toprim domain EBB55_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus EBB55_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A EBB55_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller EBB55_RS00035 PF01250 Ribosomal protein S6 EBB55_RS00040 PF00436 Single-strand binding protein family EBB55_RS00045 PF01084 Ribosomal protein S18 EBB55_RS00050 PF01368 DHH family EBB55_RS00050 PF02272 DHHA1 domain EBB55_RS00055 PF01281 Ribosomal protein L9, N-terminal domain EBB55_RS00055 PF03948 Ribosomal protein L9, C-terminal domain EBB55_RS00060 PF03796 DnaB-like helicase C terminal domain EBB55_RS00060 PF00772 DnaB-like helicase N terminal domain EBB55_RS00065 PF00709 Adenylosuccinate synthetase EBB55_RS00070 PF02645 Uncharacterised protein, DegV family COG1307 EBB55_RS00075 PF12848 ABC transporter EBB55_RS00075 PF00005 ABC transporter EBB55_RS00085 PF00205 Thiamine pyrophosphate enzyme, central domain EBB55_RS00085 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EBB55_RS00085 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EBB55_RS00090 PF02535 ZIP Zinc transporter EBB55_RS00100 PF06736 Protein of unknown function (DUF1211) EBB55_RS00105 PF04892 VanZ like family EBB55_RS00155 PF08220 DeoR-like helix-turn-helix domain EBB55_RS00155 PF00455 DeoR C terminal sensor domain EBB55_RS00160 PF00232 Glycosyl hydrolase family 1 EBB55_RS00165 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EBB55_RS00170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS00170 PF02378 Phosphotransferase system, EIIC EBB55_RS00175 PF07745 Glycosyl hydrolase family 53 EBB55_RS00185 PF00872 Transposase, Mutator family EBB55_RS00190 PF02463 RecF/RecN/SMC N terminal domain EBB55_RS00195 PF13361 UvrD-like helicase C-terminal domain EBB55_RS00195 PF00580 UvrD/REP helicase N-terminal domain EBB55_RS00220 PF18106 Rolling Circle replication initiation protein N-terminal domain EBB55_RS00220 PF02486 Replication initiation factor EBB55_RS00265 PF00877 NlpC/P60 family EBB55_RS00300 PF00186 Dihydrofolate reductase EBB55_RS00345 PF14659 Phage integrase, N-terminal SAM-like domain EBB55_RS00345 PF00589 Phage integrase family EBB55_RS00350 PF00958 GMP synthase C terminal domain EBB55_RS00350 PF00117 Glutamine amidotransferase class-I EBB55_RS00350 PF02540 NAD synthase EBB55_RS00355 PF00485 Phosphoribulokinase / Uridine kinase family EBB55_RS00360 PF05175 Methyltransferase small domain EBB55_RS00365 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS00370 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain EBB55_RS00370 PF02885 Glycosyl transferase family, helical bundle domain EBB55_RS00370 PF00591 Glycosyl transferase family, a/b domain EBB55_RS00375 PF01791 DeoC/LacD family aldolase EBB55_RS00380 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EBB55_RS00385 PF02608 ABC transporter substrate-binding protein PnrA-like EBB55_RS00390 PF00005 ABC transporter EBB55_RS00395 PF02653 Branched-chain amino acid transport system / permease component EBB55_RS00400 PF02653 Branched-chain amino acid transport system / permease component EBB55_RS00405 PF01676 Metalloenzyme superfamily EBB55_RS00410 PF01048 Phosphorylase superfamily EBB55_RS00415 PF01048 Phosphorylase superfamily EBB55_RS00425 PF00300 Histidine phosphatase superfamily (branch 1) EBB55_RS00430 PF00239 Resolvase, N terminal domain EBB55_RS00430 PF02796 Helix-turn-helix domain of resolvase EBB55_RS00435 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EBB55_RS00440 PF00164 Ribosomal protein S12/S23 EBB55_RS00445 PF00177 Ribosomal protein S7p/S5e EBB55_RS00450 PF03764 Elongation factor G, domain IV EBB55_RS00450 PF03144 Elongation factor Tu domain 2 EBB55_RS00450 PF14492 Elongation Factor G, domain II EBB55_RS00450 PF00679 Elongation factor G C-terminus EBB55_RS00450 PF00009 Elongation factor Tu GTP binding domain EBB55_RS00455 PF00009 Elongation factor Tu GTP binding domain EBB55_RS00455 PF03144 Elongation factor Tu domain 2 EBB55_RS00455 PF03143 Elongation factor Tu C-terminal domain EBB55_RS00460 PF00338 Ribosomal protein S10p/S20e EBB55_RS00465 PF00297 Ribosomal protein L3 EBB55_RS00470 PF00573 Ribosomal protein L4/L1 family EBB55_RS00475 PF00276 Ribosomal protein L23 EBB55_RS00480 PF03947 Ribosomal Proteins L2, C-terminal domain EBB55_RS00480 PF00181 Ribosomal Proteins L2, RNA binding domain EBB55_RS00485 PF00203 Ribosomal protein S19 EBB55_RS00490 PF00237 Ribosomal protein L22p/L17e EBB55_RS00495 PF00189 Ribosomal protein S3, C-terminal domain EBB55_RS00495 PF07650 KH domain EBB55_RS00500 PF00252 Ribosomal protein L16p/L10e EBB55_RS00505 PF00831 Ribosomal L29 protein EBB55_RS00510 PF00366 Ribosomal protein S17 EBB55_RS00515 PF00238 Ribosomal protein L14p/L23e EBB55_RS00520 PF00467 KOW motif EBB55_RS00520 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EBB55_RS00525 PF00281 Ribosomal protein L5 EBB55_RS00525 PF00673 ribosomal L5P family C-terminus EBB55_RS00530 PF00253 Ribosomal protein S14p/S29e EBB55_RS00535 PF00410 Ribosomal protein S8 EBB55_RS00540 PF00347 Ribosomal protein L6 EBB55_RS00545 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EBB55_RS00550 PF00333 Ribosomal protein S5, N-terminal domain EBB55_RS00550 PF03719 Ribosomal protein S5, C-terminal domain EBB55_RS00555 PF00327 Ribosomal protein L30p/L7e EBB55_RS00560 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EBB55_RS00565 PF00344 SecY translocase EBB55_RS00570 PF05191 Adenylate kinase, active site lid EBB55_RS00575 PF01176 Translation initiation factor 1A / IF-1 EBB55_RS00580 PF00444 Ribosomal protein L36 EBB55_RS00585 PF00416 Ribosomal protein S13/S18 EBB55_RS00590 PF00411 Ribosomal protein S11 EBB55_RS00595 PF01000 RNA polymerase Rpb3/RpoA insert domain EBB55_RS00595 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EBB55_RS00595 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EBB55_RS00600 PF01196 Ribosomal protein L17 EBB55_RS00605 PF00005 ABC transporter EBB55_RS00610 PF00005 ABC transporter EBB55_RS00615 PF02361 Cobalt transport protein EBB55_RS00620 PF01416 tRNA pseudouridine synthase EBB55_RS00630 PF00830 Ribosomal L28 family EBB55_RS00640 PF03780 Asp23 family, cell envelope-related function EBB55_RS00645 PF13684 Dihydroxyacetone kinase family EBB55_RS00645 PF02734 DAK2 domain EBB55_RS00650 PF17191 RecG wedge domain EBB55_RS00650 PF00270 DEAD/DEAH box helicase EBB55_RS00650 PF00271 Helicase conserved C-terminal domain EBB55_RS00655 PF02504 Fatty acid synthesis protein EBB55_RS00660 PF00550 Phosphopantetheine attachment site EBB55_RS00665 PF00005 ABC transporter EBB55_RS00665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EBB55_RS00670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EBB55_RS00670 PF00005 ABC transporter EBB55_RS00675 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS00680 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS00685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EBB55_RS00690 PF14622 Ribonuclease-III-like EBB55_RS00690 PF00035 Double-stranded RNA binding motif EBB55_RS00695 PF06470 SMC proteins Flexible Hinge Domain EBB55_RS00695 PF02463 RecF/RecN/SMC N terminal domain EBB55_RS00705 PF00448 SRP54-type protein, GTPase domain EBB55_RS00705 PF02881 SRP54-type protein, helical bundle domain EBB55_RS00710 PF02655 ATP-grasp domain EBB55_RS00710 PF04262 Glutamate-cysteine ligase EBB55_RS00710 PF18419 ATP-grasp-like domain EBB55_RS00720 PF01032 FecCD transport family EBB55_RS00725 PF01032 FecCD transport family EBB55_RS00730 PF00005 ABC transporter EBB55_RS00735 PF01497 Periplasmic binding protein EBB55_RS00760 PF06458 MucBP domain EBB55_RS00775 PF00872 Transposase, Mutator family EBB55_RS00790 PF00230 Major intrinsic protein EBB55_RS00795 PF03788 LrgA family EBB55_RS00800 PF04172 LrgB-like family EBB55_RS00825 PF02632 BioY family EBB55_RS00830 PF01479 S4 domain EBB55_RS00830 PF00163 Ribosomal protein S4/S9 N-terminal domain EBB55_RS00855 PF13277 YmdB-like protein EBB55_RS00865 PF05188 MutS domain II EBB55_RS00865 PF01624 MutS domain I EBB55_RS00865 PF00488 MutS domain V EBB55_RS00865 PF05192 MutS domain III EBB55_RS00865 PF05190 MutS family domain IV EBB55_RS00870 PF01119 DNA mismatch repair protein, C-terminal domain EBB55_RS00870 PF08676 MutL C terminal dimerisation domain EBB55_RS00875 PF02545 Maf-like protein EBB55_RS00880 PF02378 Phosphotransferase system, EIIC EBB55_RS00880 PF00367 phosphotransferase system, EIIB EBB55_RS00885 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS00885 PF07702 UTRA domain EBB55_RS00890 PF01641 SelR domain EBB55_RS00895 PF01330 RuvA N terminal domain EBB55_RS00895 PF07499 RuvA, C-terminal domain EBB55_RS00900 PF17864 RuvB AAA lid domain EBB55_RS00900 PF05491 RuvB C-terminal winged helix domain EBB55_RS00900 PF05496 Holliday junction DNA helicase RuvB P-loop domain EBB55_RS00910 PF01451 Low molecular weight phosphotyrosine protein phosphatase EBB55_RS00920 PF00872 Transposase, Mutator family EBB55_RS00925 PF05525 Branched-chain amino acid transport protein EBB55_RS00930 PF06736 Protein of unknown function (DUF1211) EBB55_RS00935 PF00324 Amino acid permease EBB55_RS00940 PF00005 ABC transporter EBB55_RS00945 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS00960 PF02146 Sir2 family EBB55_RS00965 PF12464 Maltose acetyltransferase EBB55_RS00965 PF14602 Hexapeptide repeat of succinyl-transferase EBB55_RS00970 PF02829 3H domain EBB55_RS00970 PF08279 HTH domain EBB55_RS00980 PF01327 Polypeptide deformylase EBB55_RS00985 PF00312 Ribosomal protein S15 EBB55_RS00990 PF01138 3' exoribonuclease family, domain 1 EBB55_RS00990 PF00575 S1 RNA binding domain EBB55_RS00990 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EBB55_RS00990 PF00013 KH domain EBB55_RS00990 PF03725 3' exoribonuclease family, domain 2 EBB55_RS01005 PF02705 K+ potassium transporter EBB55_RS01010 PF01595 Cyclin M transmembrane N-terminal domain EBB55_RS01010 PF00571 CBS domain EBB55_RS01010 PF03471 Transporter associated domain EBB55_RS01015 PF01554 MatE EBB55_RS01025 PF14693 Ribosomal protein TL5, C-terminal domain EBB55_RS01025 PF01386 Ribosomal L25p family EBB55_RS01030 PF00849 RNA pseudouridylate synthase EBB55_RS01030 PF01479 S4 domain EBB55_RS01035 PF13419 Haloacid dehalogenase-like hydrolase EBB55_RS01040 PF00485 Phosphoribulokinase / Uridine kinase family EBB55_RS01065 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EBB55_RS01070 PF03109 ABC1 family EBB55_RS01075 PF01820 D-ala D-ala ligase N-terminus EBB55_RS01075 PF07478 D-ala D-ala ligase C-terminus EBB55_RS01080 PF08245 Mur ligase middle domain EBB55_RS01080 PF02875 Mur ligase family, glutamate ligase domain EBB55_RS01080 PF01225 Mur ligase family, catalytic domain EBB55_RS01085 PF00271 Helicase conserved C-terminal domain EBB55_RS01085 PF00270 DEAD/DEAH box helicase EBB55_RS01090 PF01648 4'-phosphopantetheinyl transferase superfamily EBB55_RS01095 PF01168 Alanine racemase, N-terminal domain EBB55_RS01095 PF00842 Alanine racemase, C-terminal domain EBB55_RS01100 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system EBB55_RS01110 PF00253 Ribosomal protein S14p/S29e EBB55_RS01115 PF08659 KR domain EBB55_RS01115 PF02801 Beta-ketoacyl synthase, C-terminal domain EBB55_RS01115 PF00698 Acyl transferase domain EBB55_RS01115 PF00109 Beta-ketoacyl synthase, N-terminal domain EBB55_RS01115 PF08240 Alcohol dehydrogenase GroES-like domain EBB55_RS01115 PF16197 Ketoacyl-synthetase C-terminal extension EBB55_RS01115 PF14765 Polyketide synthase dehydratase EBB55_RS01115 PF00550 Phosphopantetheine attachment site EBB55_RS01120 PF01061 ABC-2 type transporter EBB55_RS01130 PF13520 Amino acid permease EBB55_RS01160 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS01165 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EBB55_RS01170 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS01185 PF07282 Putative transposase DNA-binding domain EBB55_RS01185 PF12323 Helix-turn-helix domain EBB55_RS01185 PF01385 Probable transposase EBB55_RS01195 PF02547 Queuosine biosynthesis protein EBB55_RS01200 PF00690 Cation transporter/ATPase, N-terminus EBB55_RS01200 PF00689 Cation transporting ATPase, C-terminus EBB55_RS01210 PF01702 Queuine tRNA-ribosyltransferase EBB55_RS01215 PF02699 Preprotein translocase subunit EBB55_RS01225 PF00171 Aldehyde dehydrogenase family EBB55_RS01225 PF00465 Iron-containing alcohol dehydrogenase EBB55_RS01230 PF07470 Glycosyl Hydrolase Family 88 EBB55_RS01255 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EBB55_RS01260 PF04962 KduI/IolB family EBB55_RS01270 PF01070 FMN-dependent dehydrogenase EBB55_RS01275 PF00288 GHMP kinases N terminal domain EBB55_RS01275 PF08544 GHMP kinases C terminal EBB55_RS01285 PF00288 GHMP kinases N terminal domain EBB55_RS01285 PF08544 GHMP kinases C terminal EBB55_RS01285 PF10509 Galactokinase galactose-binding signature EBB55_RS01290 PF01712 Deoxynucleoside kinase EBB55_RS01305 PF05198 Translation initiation factor IF-3, N-terminal domain EBB55_RS01305 PF00707 Translation initiation factor IF-3, C-terminal domain EBB55_RS01310 PF01632 Ribosomal protein L35 EBB55_RS01315 PF00453 Ribosomal protein L20 EBB55_RS01325 PF00872 Transposase, Mutator family EBB55_RS01335 PF01968 Hydantoinase/oxoprolinase EBB55_RS01335 PF05378 Hydantoinase/oxoprolinase N-terminal region EBB55_RS01360 PF03061 Thioesterase superfamily EBB55_RS01365 PF01256 Carbohydrate kinase EBB55_RS01370 PF01546 Peptidase family M20/M25/M40 EBB55_RS01395 PF00535 Glycosyl transferase family 2 EBB55_RS01405 PF05343 M42 glutamyl aminopeptidase EBB55_RS01410 PF00085 Thioredoxin EBB55_RS01415 PF00582 Universal stress protein family EBB55_RS01425 PF01588 Putative tRNA binding domain EBB55_RS01425 PF14794 Domain of unknown function (DUF4479) EBB55_RS01430 PF13180 PDZ domain EBB55_RS01435 PF02590 Predicted SPOUT methyltransferase EBB55_RS01445 PF06125 Bacterial protein of unknown function (DUF961) EBB55_RS01465 PF18106 Rolling Circle replication initiation protein N-terminal domain EBB55_RS01465 PF02486 Replication initiation factor EBB55_RS01470 PF01348 Type II intron maturase EBB55_RS01470 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EBB55_RS01500 PF00877 NlpC/P60 family EBB55_RS01515 PF00679 Elongation factor G C-terminus EBB55_RS01515 PF00009 Elongation factor Tu GTP binding domain EBB55_RS01515 PF14492 Elongation Factor G, domain II EBB55_RS01515 PF03764 Elongation factor G, domain IV EBB55_RS01520 PF07690 Major Facilitator Superfamily EBB55_RS01530 PF01076 Plasmid recombination enzyme EBB55_RS01535 PF01446 Replication protein EBB55_RS01540 PF13610 DDE domain EBB55_RS01545 PF00398 Ribosomal RNA adenine dimethylase EBB55_RS01550 PF08253 Erm Leader peptide EBB55_RS01555 PF13610 DDE domain EBB55_RS01565 PF00403 Heavy-metal-associated domain EBB55_RS01585 PF00375 Sodium:dicarboxylate symporter family EBB55_RS01595 PF01416 tRNA pseudouridine synthase EBB55_RS01600 PF01625 Peptide methionine sulfoxide reductase EBB55_RS01610 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS01610 PF07729 FCD domain EBB55_RS01635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS01640 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EBB55_RS01660 PF00107 Zinc-binding dehydrogenase EBB55_RS01660 PF13823 Alcohol dehydrogenase GroES-associated EBB55_RS01660 PF08240 Alcohol dehydrogenase GroES-like domain EBB55_RS01670 PF06100 MCRA family EBB55_RS01710 PF00282 Pyridoxal-dependent decarboxylase conserved domain EBB55_RS01720 PF00324 Amino acid permease EBB55_RS01725 PF00690 Cation transporter/ATPase, N-terminus EBB55_RS01725 PF00689 Cation transporting ATPase, C-terminus EBB55_RS01730 PF00689 Cation transporting ATPase, C-terminus EBB55_RS01730 PF00690 Cation transporter/ATPase, N-terminus EBB55_RS01745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS01755 PF03611 PTS system sugar-specific permease component EBB55_RS01765 PF01116 Fructose-bisphosphate aldolase class-II EBB55_RS01780 PF00293 NUDIX domain EBB55_RS01785 PF01047 MarR family EBB55_RS01810 PF00860 Permease family EBB55_RS01815 PF16657 Maltogenic Amylase, C-terminal domain EBB55_RS01815 PF00128 Alpha amylase, catalytic domain EBB55_RS01820 PF00232 Glycosyl hydrolase family 1 EBB55_RS01830 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS01830 PF00367 phosphotransferase system, EIIB EBB55_RS01830 PF02378 Phosphotransferase system, EIIC EBB55_RS01835 PF00232 Glycosyl hydrolase family 1 EBB55_RS01850 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EBB55_RS01860 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS01860 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS01870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EBB55_RS01870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EBB55_RS01875 PF01266 FAD dependent oxidoreductase EBB55_RS01875 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EBB55_RS01880 PF00230 Major intrinsic protein EBB55_RS01885 PF01713 Smr domain EBB55_RS01885 PF00488 MutS domain V EBB55_RS01890 PF01066 CDP-alcohol phosphatidyltransferase EBB55_RS01910 PF02583 Metal-sensitive transcriptional repressor EBB55_RS01915 PF00581 Rhodanese-like domain EBB55_RS01920 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS01920 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS01925 PF13538 UvrD-like helicase C-terminal domain EBB55_RS01940 PF00535 Glycosyl transferase family 2 EBB55_RS01950 PF01906 Putative heavy-metal-binding EBB55_RS01960 PF03610 PTS system fructose IIA component EBB55_RS01965 PF02733 Dak1 domain EBB55_RS01970 PF02734 DAK2 domain EBB55_RS01990 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) EBB55_RS01995 PF13545 Crp-like helix-turn-helix domain EBB55_RS01995 PF00027 Cyclic nucleotide-binding domain EBB55_RS02005 PF13732 Domain of unknown function (DUF4162) EBB55_RS02005 PF00005 ABC transporter EBB55_RS02010 PF00440 Bacterial regulatory proteins, tetR family EBB55_RS02010 PF16859 Tetracyclin repressor-like, C-terminal domain EBB55_RS02020 PF00579 tRNA synthetases class I (W and Y) EBB55_RS02020 PF01479 S4 domain EBB55_RS02025 PF00282 Pyridoxal-dependent decarboxylase conserved domain EBB55_RS02030 PF13520 Amino acid permease EBB55_RS02035 PF03553 Na+/H+ antiporter family EBB55_RS02045 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EBB55_RS02045 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS02055 PF13419 Haloacid dehalogenase-like hydrolase EBB55_RS02060 PF03632 Glycosyl hydrolase family 65 central catalytic domain EBB55_RS02060 PF03636 Glycosyl hydrolase family 65, N-terminal domain EBB55_RS02060 PF03633 Glycosyl hydrolase family 65, C-terminal domain EBB55_RS02065 PF02378 Phosphotransferase system, EIIC EBB55_RS02065 PF00367 phosphotransferase system, EIIB EBB55_RS02065 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS02070 PF03372 Endonuclease/Exonuclease/phosphatase family EBB55_RS02095 PF05870 Phenolic acid decarboxylase (PAD) EBB55_RS02100 PF10400 Virulence activator alpha C-term EBB55_RS02100 PF03551 Transcriptional regulator PadR-like family EBB55_RS02110 PF07690 Major Facilitator Superfamily EBB55_RS02140 PF02441 Flavoprotein EBB55_RS02145 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EBB55_RS02155 PF12704 MacB-like periplasmic core domain EBB55_RS02155 PF00005 ABC transporter EBB55_RS02155 PF02687 FtsX-like permease family EBB55_RS02160 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS02160 PF00072 Response regulator receiver domain EBB55_RS02165 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS02165 PF00072 Response regulator receiver domain EBB55_RS02165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS02165 PF09308 LuxQ, periplasmic EBB55_RS02170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EBB55_RS02170 PF03466 LysR substrate binding domain EBB55_RS02175 PF04474 Protein of unknown function (DUF554) EBB55_RS02210 PF00005 ABC transporter EBB55_RS02220 PF01263 Aldose 1-epimerase EBB55_RS02235 PF05257 CHAP domain EBB55_RS02235 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EBB55_RS02240 PF02378 Phosphotransferase system, EIIC EBB55_RS02240 PF00367 phosphotransferase system, EIIB EBB55_RS02240 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS02245 PF05025 RbsD / FucU transport protein family EBB55_RS02250 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EBB55_RS02250 PF00294 pfkB family carbohydrate kinase EBB55_RS02255 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS02260 PF00857 Isochorismatase family EBB55_RS02265 PF00005 ABC transporter EBB55_RS02275 PF00128 Alpha amylase, catalytic domain EBB55_RS02275 PF16657 Maltogenic Amylase, C-terminal domain EBB55_RS02285 PF01594 AI-2E family transporter EBB55_RS02290 PF01297 Zinc-uptake complex component A periplasmic EBB55_RS02290 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment EBB55_RS02295 PF04397 LytTr DNA-binding domain EBB55_RS02295 PF00072 Response regulator receiver domain EBB55_RS02305 PF04647 Accessory gene regulator B EBB55_RS02320 PF01712 Deoxynucleoside kinase EBB55_RS02335 PF13361 UvrD-like helicase C-terminal domain EBB55_RS02335 PF00580 UvrD/REP helicase N-terminal domain EBB55_RS02340 PF00872 Transposase, Mutator family EBB55_RS02345 PF03960 ArsC family EBB55_RS02350 PF03960 ArsC family EBB55_RS02380 PF00255 Glutathione peroxidase EBB55_RS02385 PF02664 S-Ribosylhomocysteinase (LuxS) EBB55_RS02390 PF01053 Cys/Met metabolism PLP-dependent enzyme EBB55_RS02400 PF00291 Pyridoxal-phosphate dependent enzyme EBB55_RS02415 PF09285 Elongation factor P, C-terminal EBB55_RS02415 PF08207 Elongation factor P (EF-P) KOW-like domain EBB55_RS02415 PF01132 Elongation factor P (EF-P) OB domain EBB55_RS02420 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EBB55_RS02420 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EBB55_RS02425 PF01678 Diaminopimelate epimerase EBB55_RS02430 PF00701 Dihydrodipicolinate synthetase family EBB55_RS02435 PF01113 Dihydrodipicolinate reductase, N-terminus EBB55_RS02435 PF05173 Dihydrodipicolinate reductase, C-terminus EBB55_RS02440 PF14602 Hexapeptide repeat of succinyl-transferase EBB55_RS02440 PF00132 Bacterial transferase hexapeptide (six repeats) EBB55_RS02440 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal EBB55_RS02445 PF02774 Semialdehyde dehydrogenase, dimerisation domain EBB55_RS02445 PF01118 Semialdehyde dehydrogenase, NAD binding domain EBB55_RS02450 PF00696 Amino acid kinase family EBB55_RS02450 PF13840 ACT domain EBB55_RS02455 PF01546 Peptidase family M20/M25/M40 EBB55_RS02455 PF07687 Peptidase dimerisation domain EBB55_RS02460 PF00155 Aminotransferase class I and II EBB55_RS02465 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS02465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS02485 PF11798 IMS family HHH motif EBB55_RS02485 PF11799 impB/mucB/samB family C-terminal domain EBB55_RS02485 PF00817 impB/mucB/samB family EBB55_RS02490 PF10509 Galactokinase galactose-binding signature EBB55_RS02490 PF08544 GHMP kinases C terminal EBB55_RS02490 PF00288 GHMP kinases N terminal domain EBB55_RS02495 PF01263 Aldose 1-epimerase EBB55_RS02500 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS02505 PF02311 AraC-like ligand binding domain EBB55_RS02505 PF12833 Helix-turn-helix domain EBB55_RS02510 PF02525 Flavodoxin-like fold EBB55_RS02520 PF00324 Amino acid permease EBB55_RS02525 PF00005 ABC transporter EBB55_RS02530 PF00950 ABC 3 transport family EBB55_RS02535 PF01297 Zinc-uptake complex component A periplasmic EBB55_RS02545 PF08331 Domain of unknown function (DUF1730) EBB55_RS02550 PF04972 BON domain EBB55_RS02550 PF01476 LysM domain EBB55_RS02570 PF01266 FAD dependent oxidoreductase EBB55_RS02575 PF07690 Major Facilitator Superfamily EBB55_RS02585 PF01316 Arginine repressor, DNA binding domain EBB55_RS02585 PF02863 Arginine repressor, C-terminal domain EBB55_RS02590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EBB55_RS02590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EBB55_RS02590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EBB55_RS02590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EBB55_RS02600 PF02566 OsmC-like protein EBB55_RS02605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS02605 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS02610 PF00857 Isochorismatase family EBB55_RS02615 PF00440 Bacterial regulatory proteins, tetR family EBB55_RS02615 PF16925 Tetracyclin repressor-like, C-terminal domain EBB55_RS02640 PF02586 SOS response associated peptidase (SRAP) EBB55_RS02700 PF05067 Manganese containing catalase EBB55_RS02705 PF01547 Bacterial extracellular solute-binding protein EBB55_RS02710 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS02715 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS02755 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS02755 PF00072 Response regulator receiver domain EBB55_RS02760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS02765 PF06800 Sugar transport protein EBB55_RS02770 PF13520 Amino acid permease EBB55_RS02775 PF05816 Toxic anion resistance protein (TelA) EBB55_RS02785 PF00293 NUDIX domain EBB55_RS02795 PF01048 Phosphorylase superfamily EBB55_RS02800 PF00857 Isochorismatase family EBB55_RS02805 PF13229 Right handed beta helix region EBB55_RS02815 PF05649 Peptidase family M13 EBB55_RS02815 PF01431 Peptidase family M13 EBB55_RS02825 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EBB55_RS02825 PF14572 Phosphoribosyl synthetase-associated domain EBB55_RS02830 PF00266 Aminotransferase class-V EBB55_RS02840 PF07690 Major Facilitator Superfamily EBB55_RS02855 PF13520 Amino acid permease EBB55_RS02860 PF00155 Aminotransferase class I and II EBB55_RS02880 PF01751 Toprim domain EBB55_RS02880 PF01131 DNA topoisomerase EBB55_RS02885 PF00535 Glycosyl transferase family 2 EBB55_RS02890 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EBB55_RS02890 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EBB55_RS02895 PF03601 Conserved hypothetical protein 698 EBB55_RS02910 PF03466 LysR substrate binding domain EBB55_RS02910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EBB55_RS02920 PF01098 Cell cycle protein EBB55_RS02925 PF03960 ArsC family EBB55_RS02930 PF01597 Glycine cleavage H-protein EBB55_RS02935 PF00005 ABC transporter EBB55_RS02935 PF09383 NIL domain EBB55_RS02940 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS02945 PF03180 NLPA lipoprotein EBB55_RS02950 PF00005 ABC transporter EBB55_RS02955 PF01458 Uncharacterized protein family (UPF0051) EBB55_RS02960 PF00266 Aminotransferase class-V EBB55_RS02965 PF01592 NifU-like N terminal domain EBB55_RS02970 PF01458 Uncharacterized protein family (UPF0051) EBB55_RS02975 PF02899 Phage integrase, N-terminal SAM-like domain EBB55_RS02975 PF00589 Phage integrase family EBB55_RS03025 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS03025 PF00367 phosphotransferase system, EIIB EBB55_RS03025 PF02378 Phosphotransferase system, EIIC EBB55_RS03030 PF00232 Glycosyl hydrolase family 1 EBB55_RS03035 PF00874 PRD domain EBB55_RS03035 PF03123 CAT RNA binding domain EBB55_RS03045 PF12161 HsdM N-terminal domain EBB55_RS03045 PF02384 N-6 DNA Methylase EBB55_RS03055 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) EBB55_RS03055 PF12008 Type I restriction and modification enzyme - subunit R C terminal EBB55_RS03055 PF18766 SWI2/SNF2 ATPase EBB55_RS03085 PF00005 ABC transporter EBB55_RS03085 PF02687 FtsX-like permease family EBB55_RS03085 PF12704 MacB-like periplasmic core domain EBB55_RS03095 PF13145 PPIC-type PPIASE domain EBB55_RS03105 PF00781 Diacylglycerol kinase catalytic domain EBB55_RS03180 PF00877 NlpC/P60 family EBB55_RS03195 PF01131 DNA topoisomerase EBB55_RS03195 PF01751 Toprim domain EBB55_RS03200 PF18840 Large polyvalent protein associated domain 25 EBB55_RS03225 PF03432 Relaxase/Mobilisation nuclease domain EBB55_RS03250 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS03250 PF00072 Response regulator receiver domain EBB55_RS03255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS03255 PF00672 HAMP domain EBB55_RS03255 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS03260 PF02557 D-alanyl-D-alanine carboxypeptidase EBB55_RS03275 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EBB55_RS03275 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EBB55_RS03280 PF01820 D-ala D-ala ligase N-terminus EBB55_RS03280 PF07478 D-ala D-ala ligase C-terminus EBB55_RS03285 PF01427 D-ala-D-ala dipeptidase EBB55_RS03320 PF09035 Excisionase from transposon Tn916 EBB55_RS03325 PF02920 DNA binding domain of tn916 integrase EBB55_RS03325 PF00589 Phage integrase family EBB55_RS03340 PF01610 Transposase EBB55_RS03340 PF13683 Integrase core domain EBB55_RS03360 PF01638 HxlR-like helix-turn-helix EBB55_RS03370 PF04203 Sortase domain EBB55_RS03375 PF01610 Transposase EBB55_RS03375 PF13683 Integrase core domain EBB55_RS03380 PF03123 CAT RNA binding domain EBB55_RS03380 PF00874 PRD domain EBB55_RS03390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS03390 PF00367 phosphotransferase system, EIIB EBB55_RS03390 PF02378 Phosphotransferase system, EIIC EBB55_RS03395 PF00232 Glycosyl hydrolase family 1 EBB55_RS03400 PF07702 UTRA domain EBB55_RS03400 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS03425 PF03641 Possible lysine decarboxylase EBB55_RS03435 PF01712 Deoxynucleoside kinase EBB55_RS03450 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS03450 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EBB55_RS03455 PF00232 Glycosyl hydrolase family 1 EBB55_RS03475 PF00884 Sulfatase EBB55_RS03485 PF00334 Nucleoside diphosphate kinase EBB55_RS03490 PF00690 Cation transporter/ATPase, N-terminus EBB55_RS03490 PF00689 Cation transporting ATPase, C-terminus EBB55_RS03495 PF13419 Haloacid dehalogenase-like hydrolase EBB55_RS03505 PF00005 ABC transporter EBB55_RS03505 PF09383 NIL domain EBB55_RS03510 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS03515 PF03180 NLPA lipoprotein EBB55_RS03520 PF01546 Peptidase family M20/M25/M40 EBB55_RS03520 PF07687 Peptidase dimerisation domain EBB55_RS03525 PF03553 Na+/H+ antiporter family EBB55_RS03545 PF00324 Amino acid permease EBB55_RS03555 PF08546 Ketopantoate reductase PanE/ApbA C terminal EBB55_RS03555 PF02558 Ketopantoate reductase PanE/ApbA EBB55_RS03560 PF02595 Glycerate kinase family EBB55_RS03565 PF12848 ABC transporter EBB55_RS03565 PF00005 ABC transporter EBB55_RS03570 PF00300 Histidine phosphatase superfamily (branch 1) EBB55_RS03580 PF13580 SIS domain EBB55_RS03585 PF02378 Phosphotransferase system, EIIC EBB55_RS03585 PF00367 phosphotransferase system, EIIB EBB55_RS03590 PF07972 NrdI Flavodoxin like EBB55_RS03595 PF13520 Amino acid permease EBB55_RS03600 PF12679 ABC-2 family transporter protein EBB55_RS03605 PF00005 ABC transporter EBB55_RS03610 PF00893 Small Multidrug Resistance protein EBB55_RS03625 PF01470 Pyroglutamyl peptidase EBB55_RS03640 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EBB55_RS03670 PF03167 Uracil DNA glycosylase superfamily EBB55_RS03675 PF01515 Phosphate acetyl/butaryl transferase EBB55_RS03680 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE EBB55_RS03685 PF13302 Acetyltransferase (GNAT) domain EBB55_RS03695 PF00929 Exonuclease EBB55_RS03695 PF14480 DNA polymerase III polC-type N-terminus I EBB55_RS03695 PF11490 DNA polymerase III polC-type N-terminus II EBB55_RS03695 PF07733 Bacterial DNA polymerase III alpha NTPase domain EBB55_RS03695 PF02811 PHP domain EBB55_RS03695 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EBB55_RS03695 PF14579 Helix-hairpin-helix motif EBB55_RS03710 PF03372 Endonuclease/Exonuclease/phosphatase family EBB55_RS03715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EBB55_RS03720 PF01565 FAD binding domain EBB55_RS03720 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EBB55_RS03745 PF00890 FAD binding domain EBB55_RS03745 PF14537 Cytochrome c3 EBB55_RS03755 PF16197 Ketoacyl-synthetase C-terminal extension EBB55_RS03755 PF08240 Alcohol dehydrogenase GroES-like domain EBB55_RS03755 PF00698 Acyl transferase domain EBB55_RS03755 PF00550 Phosphopantetheine attachment site EBB55_RS03755 PF08659 KR domain EBB55_RS03755 PF00109 Beta-ketoacyl synthase, N-terminal domain EBB55_RS03755 PF02801 Beta-ketoacyl synthase, C-terminal domain EBB55_RS03755 PF14765 Polyketide synthase dehydratase EBB55_RS03760 PF13460 NAD(P)H-binding EBB55_RS03765 PF12822 ECF transporter, substrate-specific component EBB55_RS03770 PF02441 Flavoprotein EBB55_RS03775 PF04127 DNA / pantothenate metabolism flavoprotein EBB55_RS03775 PF02441 Flavoprotein EBB55_RS03780 PF08240 Alcohol dehydrogenase GroES-like domain EBB55_RS03780 PF00107 Zinc-binding dehydrogenase EBB55_RS03790 PF00005 ABC transporter EBB55_RS03790 PF08402 TOBE domain EBB55_RS03795 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS03800 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS03805 PF13416 Bacterial extracellular solute-binding protein EBB55_RS03810 PF02954 Bacterial regulatory protein, Fis family EBB55_RS03810 PF00158 Sigma-54 interaction domain EBB55_RS03825 PF00480 ROK family EBB55_RS03870 PF14659 Phage integrase, N-terminal SAM-like domain EBB55_RS03870 PF00589 Phage integrase family EBB55_RS03880 PF01717 Cobalamin-independent synthase, Catalytic domain EBB55_RS03890 PF13411 MerR HTH family regulatory protein EBB55_RS03895 PF00120 Glutamine synthetase, catalytic domain EBB55_RS03895 PF03951 Glutamine synthetase, beta-Grasp domain EBB55_RS03910 PF06418 CTP synthase N-terminus EBB55_RS03910 PF00117 Glutamine amidotransferase class-I EBB55_RS03920 PF01116 Fructose-bisphosphate aldolase class-II EBB55_RS03925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EBB55_RS03930 PF07497 Rho termination factor, RNA-binding domain EBB55_RS03930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EBB55_RS03930 PF07498 Rho termination factor, N-terminal domain EBB55_RS03935 PF01197 Ribosomal protein L31 EBB55_RS03950 PF02378 Phosphotransferase system, EIIC EBB55_RS03950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS03955 PF01116 Fructose-bisphosphate aldolase class-II EBB55_RS03960 PF08220 DeoR-like helix-turn-helix domain EBB55_RS03960 PF00455 DeoR C terminal sensor domain EBB55_RS03970 PF07690 Major Facilitator Superfamily EBB55_RS03980 PF13545 Crp-like helix-turn-helix domain EBB55_RS04000 PF12169 DNA polymerase III subunits gamma and tau domain III EBB55_RS04005 PF02575 YbaB/EbfC DNA-binding family EBB55_RS04010 PF13662 Toprim domain EBB55_RS04010 PF02132 RecR protein EBB55_RS04015 PF02223 Thymidylate kinase EBB55_RS04020 PF06153 Cyclic-di-AMP receptor EBB55_RS04025 PF09115 DNA polymerase III, delta subunit, C terminal EBB55_RS04030 PF04468 PSP1 C-terminal conserved region EBB55_RS04035 PF06156 Initiation control protein YabA EBB55_RS04040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EBB55_RS04045 PF00817 impB/mucB/samB family EBB55_RS04045 PF11799 impB/mucB/samB family C-terminal domain EBB55_RS04045 PF11798 IMS family HHH motif EBB55_RS04055 PF03477 ATP cone domain EBB55_RS04055 PF13597 Anaerobic ribonucleoside-triphosphate reductase EBB55_RS04060 PF00005 ABC transporter EBB55_RS04065 PF02687 FtsX-like permease family EBB55_RS04080 PF13193 AMP-binding enzyme C-terminal domain EBB55_RS04080 PF00501 AMP-binding enzyme EBB55_RS04085 PF03062 MBOAT, membrane-bound O-acyltransferase family EBB55_RS04090 PF00550 Phosphopantetheine attachment site EBB55_RS04095 PF04914 DltD protein EBB55_RS04100 PF05343 M42 glutamyl aminopeptidase EBB55_RS04110 PF12706 Beta-lactamase superfamily domain EBB55_RS04115 PF10437 Bacterial lipoate protein ligase C-terminus EBB55_RS04115 PF03099 Biotin/lipoate A/B protein ligase family EBB55_RS04140 PF06993 Protein of unknown function (DUF1304) EBB55_RS04150 PF00916 Sulfate permease family EBB55_RS04150 PF01740 STAS domain EBB55_RS04165 PF00829 Ribosomal prokaryotic L21 protein EBB55_RS04175 PF01016 Ribosomal L27 protein EBB55_RS04185 PF00158 Sigma-54 interaction domain EBB55_RS04185 PF03610 PTS system fructose IIA component EBB55_RS04185 PF00874 PRD domain EBB55_RS04190 PF03610 PTS system fructose IIA component EBB55_RS04190 PF03830 PTS system sorbose subfamily IIB component EBB55_RS04195 PF03610 PTS system fructose IIA component EBB55_RS04195 PF03830 PTS system sorbose subfamily IIB component EBB55_RS04200 PF03609 PTS system sorbose-specific iic component EBB55_RS04205 PF03613 PTS system mannose/fructose/sorbose family IID component EBB55_RS04215 PF04226 Transglycosylase associated protein EBB55_RS04225 PF00557 Metallopeptidase family M24 EBB55_RS04225 PF01321 Creatinase/Prolidase N-terminal domain EBB55_RS04230 PF03780 Asp23 family, cell envelope-related function EBB55_RS04235 PF01029 NusB family EBB55_RS04240 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EBB55_RS04240 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EBB55_RS04245 PF13742 OB-fold nucleic acid binding domain EBB55_RS04245 PF02601 Exonuclease VII, large subunit EBB55_RS04250 PF02609 Exonuclease VII small subunit EBB55_RS04255 PF00348 Polyprenyl synthetase EBB55_RS04260 PF01479 S4 domain EBB55_RS04260 PF01728 FtsJ-like methyltransferase EBB55_RS04265 PF02863 Arginine repressor, C-terminal domain EBB55_RS04265 PF01316 Arginine repressor, DNA binding domain EBB55_RS04270 PF13476 AAA domain EBB55_RS04295 PF02381 MraZ protein, putative antitoxin-like EBB55_RS04300 PF01795 MraW methylase family EBB55_RS04310 PF03717 Penicillin-binding Protein dimerisation domain EBB55_RS04310 PF03793 PASTA domain EBB55_RS04310 PF00905 Penicillin binding protein transpeptidase domain EBB55_RS04315 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EBB55_RS04315 PF00953 Glycosyl transferase family 4 EBB55_RS04320 PF02875 Mur ligase family, glutamate ligase domain EBB55_RS04320 PF08245 Mur ligase middle domain EBB55_RS04325 PF03033 Glycosyltransferase family 28 N-terminal domain EBB55_RS04325 PF04101 Glycosyltransferase family 28 C-terminal domain EBB55_RS04330 PF03799 Cell division protein FtsQ EBB55_RS04330 PF08478 POTRA domain, FtsQ-type EBB55_RS04335 PF11983 Membrane-attachment and polymerisation-promoting switch EBB55_RS04335 PF02491 SHS2 domain inserted in FTSA EBB55_RS04340 PF00091 Tubulin/FtsZ family, GTPase domain EBB55_RS04340 PF12327 FtsZ family, C-terminal domain EBB55_RS04345 PF01168 Alanine racemase, N-terminal domain EBB55_RS04350 PF04472 Cell division protein SepF EBB55_RS04360 PF17774 Putative RNA-binding domain in YlmH EBB55_RS04360 PF01479 S4 domain EBB55_RS04365 PF05103 DivIVA protein EBB55_RS04370 PF06827 Zinc finger found in FPG and IleRS EBB55_RS04370 PF00133 tRNA synthetases class I (I, L, M and V) EBB55_RS04370 PF08264 Anticodon-binding domain of tRNA EBB55_RS04375 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EBB55_RS04375 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EBB55_RS04390 PF17746 SfsA N-terminal OB domain EBB55_RS04390 PF03749 Sugar fermentation stimulation protein RE domain EBB55_RS04395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EBB55_RS04400 PF00271 Helicase conserved C-terminal domain EBB55_RS04400 PF00270 DEAD/DEAH box helicase EBB55_RS04405 PF00158 Sigma-54 interaction domain EBB55_RS04405 PF00874 PRD domain EBB55_RS04405 PF03610 PTS system fructose IIA component EBB55_RS04410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS04415 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EBB55_RS04420 PF02378 Phosphotransferase system, EIIC EBB55_RS04595 PF00574 Clp protease EBB55_RS04715 PF02073 Thermophilic metalloprotease (M29) EBB55_RS04725 PF00258 Flavodoxin EBB55_RS04730 PF00557 Metallopeptidase family M24 EBB55_RS04735 PF03631 Virulence factor BrkB EBB55_RS04740 PF00953 Glycosyl transferase family 4 EBB55_RS04755 PF00535 Glycosyl transferase family 2 EBB55_RS04760 PF00483 Nucleotidyl transferase EBB55_RS04765 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EBB55_RS04770 PF16363 GDP-mannose 4,6 dehydratase EBB55_RS04775 PF04321 RmlD substrate binding domain EBB55_RS04790 PF01061 ABC-2 type transporter EBB55_RS04795 PF08239 Bacterial SH3 domain EBB55_RS04795 PF00005 ABC transporter EBB55_RS04800 PF00398 Ribosomal RNA adenine dimethylase EBB55_RS04805 PF00535 Glycosyl transferase family 2 EBB55_RS04815 PF02397 Bacterial sugar transferase EBB55_RS04820 PF00535 Glycosyl transferase family 2 EBB55_RS04825 PF00535 Glycosyl transferase family 2 EBB55_RS04830 PF01501 Glycosyl transferase family 8 EBB55_RS04830 PF00535 Glycosyl transferase family 2 EBB55_RS04835 PF00535 Glycosyl transferase family 2 EBB55_RS04835 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase EBB55_RS04855 PF01695 IstB-like ATP binding protein EBB55_RS04870 PF01467 Cytidylyltransferase-like EBB55_RS04880 PF01370 NAD dependent epimerase/dehydratase family EBB55_RS04895 PF13007 Transposase C of IS166 homeodomain EBB55_RS04895 PF03050 Transposase IS66 family EBB55_RS04895 PF13817 IS66 C-terminal element EBB55_RS04895 PF13005 zinc-finger binding domain of transposase IS66 EBB55_RS04900 PF00872 Transposase, Mutator family EBB55_RS04910 PF00872 Transposase, Mutator family EBB55_RS04920 PF02618 YceG-like family EBB55_RS04925 PF03449 Transcription elongation factor, N-terminal EBB55_RS04925 PF01272 Transcription elongation factor, GreA/GreB, C-term EBB55_RS04935 PF07730 Histidine kinase EBB55_RS04935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS04935 PF00672 HAMP domain EBB55_RS04940 PF00196 Bacterial regulatory proteins, luxR family EBB55_RS04940 PF00072 Response regulator receiver domain EBB55_RS04945 PF02254 TrkA-N domain EBB55_RS04945 PF02080 TrkA-C domain EBB55_RS04955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EBB55_RS04965 PF01545 Cation efflux family EBB55_RS04970 PF04138 GtrA-like protein EBB55_RS04975 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EBB55_RS04975 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EBB55_RS04980 PF00313 'Cold-shock' DNA-binding domain EBB55_RS04985 PF03816 Cell envelope-related transcriptional attenuator domain EBB55_RS04990 PF03073 TspO/MBR family EBB55_RS04995 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading EBB55_RS05000 PF05958 tRNA (Uracil-5-)-methyltransferase EBB55_RS05000 PF01938 TRAM domain EBB55_RS05005 PF02631 RecX family EBB55_RS05010 PF00730 HhH-GPD superfamily base excision DNA repair protein EBB55_RS05010 PF14815 NUDIX domain EBB55_RS05015 PF04167 Protein of unknown function (DUF402) EBB55_RS05025 PF01594 AI-2E family transporter EBB55_RS05030 PF00571 CBS domain EBB55_RS05030 PF03471 Transporter associated domain EBB55_RS05030 PF01595 Cyclin M transmembrane N-terminal domain EBB55_RS05040 PF00009 Elongation factor Tu GTP binding domain EBB55_RS05040 PF03144 Elongation factor Tu domain 2 EBB55_RS05040 PF16658 Class II release factor RF3, C-terminal domain EBB55_RS05060 PF17871 AAA lid domain EBB55_RS05060 PF07724 AAA domain (Cdc48 subfamily) EBB55_RS05060 PF00004 ATPase family associated with various cellular activities (AAA) EBB55_RS05060 PF10431 C-terminal, D2-small domain, of ClpB protein EBB55_RS05065 PF00381 PTS HPr component phosphorylation site EBB55_RS05070 PF05524 PEP-utilising enzyme, N-terminal EBB55_RS05070 PF00391 PEP-utilising enzyme, mobile domain EBB55_RS05070 PF02896 PEP-utilising enzyme, TIM barrel domain EBB55_RS05075 PF13439 Glycosyltransferase Family 4 EBB55_RS05075 PF00534 Glycosyl transferases group 1 EBB55_RS05080 PF00534 Glycosyl transferases group 1 EBB55_RS05080 PF13439 Glycosyltransferase Family 4 EBB55_RS05085 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EBB55_RS05085 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EBB55_RS05090 PF08796 Protein of unknown function (DUF1797) EBB55_RS05095 PF08459 UvrC Helix-hairpin-helix N-terminal EBB55_RS05095 PF02151 UvrB/uvrC motif EBB55_RS05095 PF01541 GIY-YIG catalytic domain EBB55_RS05100 PF01047 MarR family EBB55_RS05105 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EBB55_RS05105 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EBB55_RS05110 PF00550 Phosphopantetheine attachment site EBB55_RS05115 PF00698 Acyl transferase domain EBB55_RS05125 PF00109 Beta-ketoacyl synthase, N-terminal domain EBB55_RS05125 PF02801 Beta-ketoacyl synthase, C-terminal domain EBB55_RS05130 PF00364 Biotin-requiring enzyme EBB55_RS05135 PF07977 FabA-like domain EBB55_RS05140 PF02785 Biotin carboxylase C-terminal domain EBB55_RS05140 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EBB55_RS05140 PF00289 Biotin carboxylase, N-terminal domain EBB55_RS05145 PF01039 Carboxyl transferase domain EBB55_RS05150 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EBB55_RS05160 PF01926 50S ribosome-binding GTPase EBB55_RS05165 PF01985 CRS1 / YhbY (CRM) domain EBB55_RS05170 PF01467 Cytidylyltransferase-like EBB55_RS05175 PF01966 HD domain EBB55_RS05185 PF13649 Methyltransferase domain EBB55_RS05190 PF05636 HIGH Nucleotidyl Transferase EBB55_RS05195 PF01709 Transcriptional regulator EBB55_RS05205 PF13538 UvrD-like helicase C-terminal domain EBB55_RS05210 PF00403 Heavy-metal-associated domain EBB55_RS05215 PF01361 Tautomerase enzyme EBB55_RS05225 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EBB55_RS05225 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EBB55_RS05225 PF03129 Anticodon binding domain EBB55_RS05225 PF02824 TGS domain EBB55_RS05230 PF01418 Helix-turn-helix domain, rpiR family EBB55_RS05230 PF01380 SIS domain EBB55_RS05235 PF03717 Penicillin-binding Protein dimerisation domain EBB55_RS05235 PF00905 Penicillin binding protein transpeptidase domain EBB55_RS05250 PF00860 Permease family EBB55_RS05255 PF07690 Major Facilitator Superfamily EBB55_RS05265 PF07733 Bacterial DNA polymerase III alpha NTPase domain EBB55_RS05265 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EBB55_RS05265 PF14579 Helix-hairpin-helix motif EBB55_RS05265 PF01336 OB-fold nucleic acid binding domain EBB55_RS05265 PF02811 PHP domain EBB55_RS05270 PF00365 Phosphofructokinase EBB55_RS05275 PF00224 Pyruvate kinase, barrel domain EBB55_RS05275 PF02887 Pyruvate kinase, alpha/beta domain EBB55_RS05275 PF00391 PEP-utilising enzyme, mobile domain EBB55_RS05280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EBB55_RS05280 PF03466 LysR substrate binding domain EBB55_RS05290 PF01783 Ribosomal L32p protein family EBB55_RS05295 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EBB55_RS05295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EBB55_RS05300 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS05300 PF00072 Response regulator receiver domain EBB55_RS05305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS05305 PF18719 ArlS sensor domain EBB55_RS05305 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS05415 PF00874 PRD domain EBB55_RS05415 PF03123 CAT RNA binding domain EBB55_RS05420 PF04794 YdjC-like protein EBB55_RS05425 PF02378 Phosphotransferase system, EIIC EBB55_RS05425 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS05425 PF00367 phosphotransferase system, EIIB EBB55_RS05435 PF00367 phosphotransferase system, EIIB EBB55_RS05435 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS05435 PF02378 Phosphotransferase system, EIIC EBB55_RS05440 PF02378 Phosphotransferase system, EIIC EBB55_RS05470 PF00455 DeoR C terminal sensor domain EBB55_RS05470 PF08220 DeoR-like helix-turn-helix domain EBB55_RS05480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS05485 PF03611 PTS system sugar-specific permease component EBB55_RS05495 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EBB55_RS05500 PF01261 Xylose isomerase-like TIM barrel EBB55_RS05505 PF00596 Class II Aldolase and Adducin N-terminal domain EBB55_RS05510 PF00583 Acetyltransferase (GNAT) family EBB55_RS05535 PF08279 HTH domain EBB55_RS05535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS05535 PF05043 Mga helix-turn-helix domain EBB55_RS05535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS05535 PF00874 PRD domain EBB55_RS05570 PF01979 Amidohydrolase family EBB55_RS05575 PF03841 L-seryl-tRNA selenium transferase EBB55_RS05580 PF07071 KDGP aldolase EBB55_RS05585 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS05585 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS05585 PF02378 Phosphotransferase system, EIIC EBB55_RS05590 PF08279 HTH domain EBB55_RS05590 PF00874 PRD domain EBB55_RS05590 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS05590 PF05043 Mga helix-turn-helix domain EBB55_RS05595 PF01451 Low molecular weight phosphotyrosine protein phosphatase EBB55_RS05600 PF00296 Luciferase-like monooxygenase EBB55_RS05605 PF13411 MerR HTH family regulatory protein EBB55_RS05610 PF02129 X-Pro dipeptidyl-peptidase (S15 family) EBB55_RS05620 PF00294 pfkB family carbohydrate kinase EBB55_RS05625 PF08220 DeoR-like helix-turn-helix domain EBB55_RS05625 PF00455 DeoR C terminal sensor domain EBB55_RS05630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS05645 PF03611 PTS system sugar-specific permease component EBB55_RS05660 PF01738 Dienelactone hydrolase family EBB55_RS05665 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EBB55_RS05675 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS05675 PF07702 UTRA domain EBB55_RS05680 PF02378 Phosphotransferase system, EIIC EBB55_RS05685 PF00232 Glycosyl hydrolase family 1 EBB55_RS05690 PF00582 Universal stress protein family EBB55_RS05695 PF03551 Transcriptional regulator PadR-like family EBB55_RS05705 PF03960 ArsC family EBB55_RS05715 PF08543 Phosphomethylpyrimidine kinase EBB55_RS05720 PF13091 PLD-like domain EBB55_RS05720 PF13396 Phospholipase_D-nuclease N-terminal EBB55_RS05735 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal EBB55_RS05735 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal EBB55_RS05740 PF02803 Thiolase, C-terminal domain EBB55_RS05740 PF00108 Thiolase, N-terminal domain EBB55_RS05755 PF00248 Aldo/keto reductase family EBB55_RS05770 PF03144 Elongation factor Tu domain 2 EBB55_RS05770 PF03143 Elongation factor Tu C-terminal domain EBB55_RS05770 PF00009 Elongation factor Tu GTP binding domain EBB55_RS05775 PF09924 Uncharacterised conserved protein (DUF2156) EBB55_RS05775 PF03706 Lysylphosphatidylglycerol synthase TM region EBB55_RS05780 PF00561 alpha/beta hydrolase fold EBB55_RS05800 PF01807 CHC2 zinc finger EBB55_RS05800 PF08275 DNA primase catalytic core, N-terminal domain EBB55_RS05800 PF10410 DnaB-helicase binding domain of primase EBB55_RS05805 PF04542 Sigma-70 region 2 EBB55_RS05805 PF04545 Sigma-70, region 4 EBB55_RS05805 PF04539 Sigma-70 region 3 EBB55_RS05805 PF03979 Sigma-70 factor, region 1.1 EBB55_RS05805 PF00140 Sigma-70 factor, region 1.2 EBB55_RS05810 PF18708 MapZ extracellular C-terminal domain 2 EBB55_RS05810 PF18041 MapZ extracellular domain 1 EBB55_RS05815 PF13509 S1 domain EBB55_RS05815 PF17783 CvfB-like winged helix domain EBB55_RS05820 PF01475 Ferric uptake regulator family EBB55_RS05825 PF00589 Phage integrase family EBB55_RS05825 PF02899 Phage integrase, N-terminal SAM-like domain EBB55_RS05835 PF02616 Segregation and condensation protein ScpA EBB55_RS05840 PF04079 Segregation and condensation complex subunit ScpB EBB55_RS05845 PF00849 RNA pseudouridylate synthase EBB55_RS05845 PF01479 S4 domain EBB55_RS05850 PF12822 ECF transporter, substrate-specific component EBB55_RS05855 PF03606 C4-dicarboxylate anaerobic carrier EBB55_RS05860 PF01546 Peptidase family M20/M25/M40 EBB55_RS05880 PF00271 Helicase conserved C-terminal domain EBB55_RS05880 PF00270 DEAD/DEAH box helicase EBB55_RS05890 PF02224 Cytidylate kinase EBB55_RS05895 PF00575 S1 RNA binding domain EBB55_RS05900 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EBB55_RS05900 PF01926 50S ribosome-binding GTPase EBB55_RS05905 PF00216 Bacterial DNA-binding protein EBB55_RS05925 PF08858 IDEAL domain EBB55_RS05925 PF08864 UPF0302 domain EBB55_RS05930 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EBB55_RS05930 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EBB55_RS05935 PF03819 MazG nucleotide pyrophosphohydrolase domain EBB55_RS05940 PF13735 tRNA nucleotidyltransferase domain 2 putative EBB55_RS05940 PF01743 Poly A polymerase head domain EBB55_RS05940 PF12627 Probable RNA and SrmB- binding site of polymerase A EBB55_RS05955 PF00999 Sodium/hydrogen exchanger family EBB55_RS05960 PF12848 ABC transporter EBB55_RS05960 PF16326 ABC transporter C-terminal domain EBB55_RS05960 PF00005 ABC transporter EBB55_RS05965 PF00303 Thymidylate synthase EBB55_RS05970 PF00186 Dihydrofolate reductase EBB55_RS05975 PF03006 Haemolysin-III related EBB55_RS05980 PF02645 Uncharacterised protein, DegV family COG1307 EBB55_RS05985 PF13472 GDSL-like Lipase/Acylhydrolase family EBB55_RS05990 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) EBB55_RS05995 PF01625 Peptide methionine sulfoxide reductase EBB55_RS06000 PF06855 YozE SAM-like fold EBB55_RS06005 PF10502 Signal peptidase, peptidase S26 EBB55_RS06020 PF01926 50S ribosome-binding GTPase EBB55_RS06025 PF01351 Ribonuclease HII EBB55_RS06030 PF18255 DNA processing protein A sterile alpha motif domain EBB55_RS06030 PF02481 DNA recombination-mediator protein A EBB55_RS06035 PF01751 Toprim domain EBB55_RS06035 PF01396 Topoisomerase DNA binding C4 zinc finger EBB55_RS06035 PF01131 DNA topoisomerase EBB55_RS06040 PF01134 Glucose inhibited division protein A EBB55_RS06045 PF02899 Phage integrase, N-terminal SAM-like domain EBB55_RS06045 PF00589 Phage integrase family EBB55_RS06050 PF00227 Proteasome subunit EBB55_RS06055 PF07724 AAA domain (Cdc48 subfamily) EBB55_RS06055 PF10431 C-terminal, D2-small domain, of ClpB protein EBB55_RS06055 PF00004 ATPase family associated with various cellular activities (AAA) EBB55_RS06060 PF08222 CodY helix-turn-helix domain EBB55_RS06060 PF06018 CodY GAF-like domain EBB55_RS06070 PF02660 Glycerol-3-phosphate acyltransferase EBB55_RS06075 PF13380 CoA binding domain EBB55_RS06080 PF01751 Toprim domain EBB55_RS06080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS06080 PF00204 DNA gyrase B EBB55_RS06080 PF00986 DNA gyrase B subunit, carboxyl terminus EBB55_RS06085 PF03989 DNA gyrase C-terminal domain, beta-propeller EBB55_RS06085 PF00521 DNA gyrase/topoisomerase IV, subunit A EBB55_RS06090 PF01228 Glycine radical EBB55_RS06090 PF02901 Pyruvate formate lyase-like EBB55_RS06095 PF04055 Radical SAM superfamily EBB55_RS06100 PF01368 DHH family EBB55_RS06100 PF02833 DHHA2 domain EBB55_RS06120 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EBB55_RS06130 PF00326 Prolyl oligopeptidase family EBB55_RS06135 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS06145 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EBB55_RS06145 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EBB55_RS06165 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EBB55_RS06170 PF00571 CBS domain EBB55_RS06170 PF00005 ABC transporter EBB55_RS06175 PF00403 Heavy-metal-associated domain EBB55_RS06175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS06175 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS06180 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS06190 PF00005 ABC transporter EBB55_RS06195 PF01026 TatD related DNase EBB55_RS06200 PF01476 LysM domain EBB55_RS06200 PF05257 CHAP domain EBB55_RS06215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EBB55_RS06225 PF00872 Transposase, Mutator family EBB55_RS06240 PF00155 Aminotransferase class I and II EBB55_RS06250 PF01979 Amidohydrolase family EBB55_RS06260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EBB55_RS06260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EBB55_RS06265 PF00072 Response regulator receiver domain EBB55_RS06270 PF00989 PAS fold EBB55_RS06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS06270 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain EBB55_RS06270 PF17203 Single cache domain 3 EBB55_RS06275 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain EBB55_RS06275 PF17203 Single cache domain 3 EBB55_RS06275 PF00989 PAS fold EBB55_RS06275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS06290 PF07282 Putative transposase DNA-binding domain EBB55_RS06290 PF12323 Helix-turn-helix domain EBB55_RS06290 PF01385 Probable transposase EBB55_RS06295 PF15975 Flotillin EBB55_RS06295 PF01145 SPFH domain / Band 7 family EBB55_RS06315 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EBB55_RS06315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EBB55_RS06325 PF02557 D-alanyl-D-alanine carboxypeptidase EBB55_RS06330 PF01476 LysM domain EBB55_RS06330 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EBB55_RS06340 PF13416 Bacterial extracellular solute-binding protein EBB55_RS06345 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS06350 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS06360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EBB55_RS06360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EBB55_RS06365 PF00156 Phosphoribosyl transferase domain EBB55_RS06370 PF00860 Permease family EBB55_RS06380 PF00731 AIR carboxylase EBB55_RS06385 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EBB55_RS06385 PF02222 ATP-grasp domain EBB55_RS06390 PF00206 Lyase EBB55_RS06390 PF10397 Adenylosuccinate lyase C-terminus EBB55_RS06410 PF01259 SAICAR synthetase EBB55_RS06415 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase EBB55_RS06425 PF02769 AIR synthase related protein, C-terminal domain EBB55_RS06425 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EBB55_RS06425 PF00586 AIR synthase related protein, N-terminal domain EBB55_RS06430 PF00156 Phosphoribosyl transferase domain EBB55_RS06430 PF13537 Glutamine amidotransferase domain EBB55_RS06435 PF00586 AIR synthase related protein, N-terminal domain EBB55_RS06435 PF02769 AIR synthase related protein, C-terminal domain EBB55_RS06440 PF00551 Formyl transferase EBB55_RS06445 PF02142 MGS-like domain EBB55_RS06445 PF01808 AICARFT/IMPCHase bienzyme EBB55_RS06450 PF02844 Phosphoribosylglycinamide synthetase, N domain EBB55_RS06450 PF02843 Phosphoribosylglycinamide synthetase, C domain EBB55_RS06450 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EBB55_RS06455 PF00248 Aldo/keto reductase family EBB55_RS06460 PF04397 LytTr DNA-binding domain EBB55_RS06460 PF00072 Response regulator receiver domain EBB55_RS06465 PF06580 Histidine kinase EBB55_RS06465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS06465 PF00672 HAMP domain EBB55_RS06465 PF02743 Cache domain EBB55_RS06475 PF13407 Periplasmic binding protein domain EBB55_RS06480 PF00005 ABC transporter EBB55_RS06485 PF02653 Branched-chain amino acid transport system / permease component EBB55_RS06490 PF00478 IMP dehydrogenase / GMP reductase domain EBB55_RS06500 PF00155 Aminotransferase class I and II EBB55_RS06500 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS06510 PF00676 Dehydrogenase E1 component EBB55_RS06515 PF02779 Transketolase, pyrimidine binding domain EBB55_RS06515 PF02780 Transketolase, C-terminal domain EBB55_RS06520 PF00364 Biotin-requiring enzyme EBB55_RS06520 PF02817 e3 binding domain EBB55_RS06520 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EBB55_RS06525 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS06525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS06530 PF05256 Uncharacterised protein family (UPF0223) EBB55_RS06535 PF00459 Inositol monophosphatase family EBB55_RS06540 PF03144 Elongation factor Tu domain 2 EBB55_RS06540 PF00009 Elongation factor Tu GTP binding domain EBB55_RS06540 PF14492 Elongation Factor G, domain II EBB55_RS06540 PF00679 Elongation factor G C-terminus EBB55_RS06550 PF09382 RQC domain EBB55_RS06550 PF00270 DEAD/DEAH box helicase EBB55_RS06550 PF00271 Helicase conserved C-terminal domain EBB55_RS06550 PF16124 RecQ zinc-binding EBB55_RS06550 PF00570 HRDC domain EBB55_RS06555 PF07408 Protein of unknown function (DUF1507) EBB55_RS06560 PF01098 Cell cycle protein EBB55_RS06565 PF00289 Biotin carboxylase, N-terminal domain EBB55_RS06565 PF00682 HMGL-like EBB55_RS06565 PF02785 Biotin carboxylase C-terminal domain EBB55_RS06565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EBB55_RS06565 PF02436 Conserved carboxylase domain EBB55_RS06565 PF00364 Biotin-requiring enzyme EBB55_RS06580 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) EBB55_RS06590 PF01467 Cytidylyltransferase-like EBB55_RS06595 PF13180 PDZ domain EBB55_RS06595 PF05362 Lon protease (S16) C-terminal proteolytic domain EBB55_RS06600 PF10531 SLBB domain EBB55_RS06615 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EBB55_RS06620 PF00753 Metallo-beta-lactamase superfamily EBB55_RS06620 PF13567 Domain of unknown function (DUF4131) EBB55_RS06620 PF03772 Competence protein EBB55_RS06625 PF06144 DNA polymerase III, delta subunit EBB55_RS06630 PF01649 Ribosomal protein S20 EBB55_RS06640 PF04284 Protein of unknown function (DUF441) EBB55_RS06650 PF02673 Bacitracin resistance protein BacA EBB55_RS06660 PF00753 Metallo-beta-lactamase superfamily EBB55_RS06670 PF04461 Protein of unknown function (DUF520) EBB55_RS06675 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EBB55_RS06675 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EBB55_RS06680 PF01883 Iron-sulfur cluster assembly protein EBB55_RS06695 PF05257 CHAP domain EBB55_RS06695 PF01476 LysM domain EBB55_RS06755 PF13529 Peptidase_C39 like family EBB55_RS06775 PF00854 POT family EBB55_RS06785 PF12705 PD-(D/E)XK nuclease superfamily EBB55_RS06790 PF00580 UvrD/REP helicase N-terminal domain EBB55_RS06790 PF12705 PD-(D/E)XK nuclease superfamily EBB55_RS06790 PF13361 UvrD-like helicase C-terminal domain EBB55_RS06795 PF01638 HxlR-like helix-turn-helix EBB55_RS06800 PF01409 tRNA synthetases class II core domain (F) EBB55_RS06800 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EBB55_RS06805 PF03147 Ferredoxin-fold anticodon binding domain EBB55_RS06805 PF03483 B3/4 domain EBB55_RS06805 PF03484 tRNA synthetase B5 domain EBB55_RS06805 PF01588 Putative tRNA binding domain EBB55_RS06805 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EBB55_RS06810 PF00579 tRNA synthetases class I (W and Y) EBB55_RS06815 PF00005 ABC transporter EBB55_RS06820 PF00497 Bacterial extracellular solute-binding proteins, family 3 EBB55_RS06825 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS06830 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS06835 PF01177 Asp/Glu/Hydantoin racemase EBB55_RS06840 PF03725 3' exoribonuclease family, domain 2 EBB55_RS06840 PF01138 3' exoribonuclease family, domain 1 EBB55_RS06855 PF00924 Mechanosensitive ion channel EBB55_RS06860 PF01063 Amino-transferase class IV EBB55_RS06870 PF07977 FabA-like domain EBB55_RS06875 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EBB55_RS06895 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EBB55_RS06895 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EBB55_RS06900 PF01018 GTP1/OBG EBB55_RS06900 PF01926 50S ribosome-binding GTPase EBB55_RS06900 PF09269 Domain of unknown function (DUF1967) EBB55_RS06910 PF12706 Beta-lactamase superfamily domain EBB55_RS06910 PF00753 Metallo-beta-lactamase superfamily EBB55_RS06915 PF00106 short chain dehydrogenase EBB55_RS06920 PF06305 Lipopolysaccharide assembly protein A domain EBB55_RS06925 PF10141 Single-strand DNA-specific exonuclease, C terminal domain EBB55_RS06925 PF17768 RecJ OB domain EBB55_RS06925 PF01368 DHH family EBB55_RS06925 PF02272 DHHA1 domain EBB55_RS06930 PF00156 Phosphoribosyl transferase domain EBB55_RS06940 PF01726 LexA DNA binding domain EBB55_RS06940 PF00717 Peptidase S24-like EBB55_RS06945 PF05979 Bacterial protein of unknown function (DUF896) EBB55_RS06950 PF02779 Transketolase, pyrimidine binding domain EBB55_RS06950 PF02780 Transketolase, C-terminal domain EBB55_RS06950 PF00456 Transketolase, thiamine diphosphate binding domain EBB55_RS06955 PF00665 Integrase core domain EBB55_RS06955 PF13936 Helix-turn-helix domain EBB55_RS06960 PF01476 LysM domain EBB55_RS06960 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EBB55_RS06965 PF00291 Pyridoxal-phosphate dependent enzyme EBB55_RS06970 PF01475 Ferric uptake regulator family EBB55_RS06975 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS06975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS07000 PF01047 MarR family EBB55_RS07005 PF07690 Major Facilitator Superfamily EBB55_RS07010 PF07261 Replication initiation and membrane attachment EBB55_RS07015 PF00633 Helix-hairpin-helix motif EBB55_RS07015 PF00730 HhH-GPD superfamily base excision DNA repair protein EBB55_RS07015 PF10576 Iron-sulfur binding domain of endonuclease III EBB55_RS07025 PF00872 Transposase, Mutator family EBB55_RS07035 PF02378 Phosphotransferase system, EIIC EBB55_RS07045 PF01380 SIS domain EBB55_RS07045 PF01418 Helix-turn-helix domain, rpiR family EBB55_RS07065 PF00403 Heavy-metal-associated domain EBB55_RS07070 PF00403 Heavy-metal-associated domain EBB55_RS07080 PF00872 Transposase, Mutator family EBB55_RS07085 PF01610 Transposase EBB55_RS07085 PF13683 Integrase core domain EBB55_RS07090 PF00912 Transglycosylase EBB55_RS07090 PF00905 Penicillin binding protein transpeptidase domain EBB55_RS07095 PF03838 Recombination protein U EBB55_RS07100 PF06908 YspA SLOG family EBB55_RS07105 PF05103 DivIVA protein EBB55_RS07115 PF02926 THUMP domain EBB55_RS07115 PF01170 Putative RNA methylase family UPF0020 EBB55_RS07120 PF02074 Carboxypeptidase Taq (M32) metallopeptidase EBB55_RS07125 PF01966 HD domain EBB55_RS07140 PF00155 Aminotransferase class I and II EBB55_RS07145 PF01370 NAD dependent epimerase/dehydratase family EBB55_RS07150 PF13520 Amino acid permease EBB55_RS07165 PF00271 Helicase conserved C-terminal domain EBB55_RS07165 PF00270 DEAD/DEAH box helicase EBB55_RS07170 PF13673 Acetyltransferase (GNAT) domain EBB55_RS07180 PF01411 tRNA synthetases class II (A) EBB55_RS07180 PF02272 DHHA1 domain EBB55_RS07180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EBB55_RS07185 PF12822 ECF transporter, substrate-specific component EBB55_RS07195 PF13456 Reverse transcriptase-like EBB55_RS07200 PF17255 EbsA-like protein EBB55_RS07205 PF00313 'Cold-shock' DNA-binding domain EBB55_RS07215 PF01268 Formate--tetrahydrofolate ligase EBB55_RS07235 PF01252 Signal peptidase (SPase) II EBB55_RS07240 PF01479 S4 domain EBB55_RS07240 PF00849 RNA pseudouridylate synthase EBB55_RS07245 PF00156 Phosphoribosyl transferase domain EBB55_RS07250 PF00860 Permease family EBB55_RS07255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EBB55_RS07255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EBB55_RS07260 PF01979 Amidohydrolase family EBB55_RS07265 PF00117 Glutamine amidotransferase class-I EBB55_RS07265 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EBB55_RS07270 PF02142 MGS-like domain EBB55_RS07270 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EBB55_RS07270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EBB55_RS07275 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B EBB55_RS07275 PF00970 Oxidoreductase FAD-binding domain EBB55_RS07280 PF01180 Dihydroorotate dehydrogenase EBB55_RS07285 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EBB55_RS07290 PF00156 Phosphoribosyl transferase domain EBB55_RS07315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EBB55_RS07315 PF03466 LysR substrate binding domain EBB55_RS07320 PF05670 NFACT protein RNA binding domain EBB55_RS07335 PF02653 Branched-chain amino acid transport system / permease component EBB55_RS07340 PF00005 ABC transporter EBB55_RS07345 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EBB55_RS07345 PF08501 Shikimate dehydrogenase substrate binding domain EBB55_RS07350 PF03816 Cell envelope-related transcriptional attenuator domain EBB55_RS07360 PF01131 DNA topoisomerase EBB55_RS07360 PF01751 Toprim domain EBB55_RS07380 PF00056 lactate/malate dehydrogenase, NAD binding domain EBB55_RS07380 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EBB55_RS07385 PF02311 AraC-like ligand binding domain EBB55_RS07385 PF12833 Helix-turn-helix domain EBB55_RS07400 PF03611 PTS system sugar-specific permease component EBB55_RS07410 PF08279 HTH domain EBB55_RS07410 PF05043 Mga helix-turn-helix domain EBB55_RS07410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS07410 PF00874 PRD domain EBB55_RS07410 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS07420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EBB55_RS07420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EBB55_RS07445 PF00005 ABC transporter EBB55_RS07455 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS07455 PF00072 Response regulator receiver domain EBB55_RS07460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS07460 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS07470 PF11181 Heat induced stress protein YflT EBB55_RS07470 PF09557 Domain of unknown function (DUF2382) EBB55_RS07480 PF13193 AMP-binding enzyme C-terminal domain EBB55_RS07480 PF00501 AMP-binding enzyme EBB55_RS07485 PF08543 Phosphomethylpyrimidine kinase EBB55_RS07495 PF04260 Protein of unknown function (DUF436) EBB55_RS07500 PF16657 Maltogenic Amylase, C-terminal domain EBB55_RS07500 PF00128 Alpha amylase, catalytic domain EBB55_RS07510 PF13610 DDE domain EBB55_RS07520 PF01385 Probable transposase EBB55_RS07520 PF12323 Helix-turn-helix domain EBB55_RS07520 PF07282 Putative transposase DNA-binding domain EBB55_RS07530 PF13610 DDE domain EBB55_RS07545 PF02645 Uncharacterised protein, DegV family COG1307 EBB55_RS07550 PF14667 Polysaccharide biosynthesis C-terminal domain EBB55_RS07550 PF01943 Polysaccharide biosynthesis protein EBB55_RS07570 PF01545 Cation efflux family EBB55_RS07570 PF16916 Dimerisation domain of Zinc Transporter EBB55_RS07600 PF08903 Domain of unknown function (DUF1846) EBB55_RS07620 PF00625 Guanylate kinase EBB55_RS07640 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS07645 PF00497 Bacterial extracellular solute-binding proteins, family 3 EBB55_RS07650 PF01425 Amidase EBB55_RS07655 PF01180 Dihydroorotate dehydrogenase EBB55_RS07675 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS07680 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS07685 PF13416 Bacterial extracellular solute-binding protein EBB55_RS07690 PF02903 Alpha amylase, N-terminal ig-like domain EBB55_RS07690 PF00128 Alpha amylase, catalytic domain EBB55_RS07695 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EBB55_RS07695 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EBB55_RS07705 PF02566 OsmC-like protein EBB55_RS07710 PF01047 MarR family EBB55_RS07715 PF01594 AI-2E family transporter EBB55_RS07730 PF03786 D-mannonate dehydratase (UxuA) EBB55_RS07735 PF01232 Mannitol dehydrogenase Rossmann domain EBB55_RS07735 PF08125 Mannitol dehydrogenase C-terminal domain EBB55_RS07745 PF00578 AhpC/TSA family EBB55_RS07750 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS07750 PF13192 Thioredoxin domain EBB55_RS07770 PF00999 Sodium/hydrogen exchanger family EBB55_RS07775 PF00905 Penicillin binding protein transpeptidase domain EBB55_RS07775 PF03717 Penicillin-binding Protein dimerisation domain EBB55_RS07775 PF05223 NTF2-like N-terminal transpeptidase domain EBB55_RS07780 PF03816 Cell envelope-related transcriptional attenuator domain EBB55_RS07785 PF01098 Cell cycle protein EBB55_RS07795 PF01613 Flavin reductase like domain EBB55_RS07800 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase EBB55_RS07810 PF02780 Transketolase, C-terminal domain EBB55_RS07810 PF02779 Transketolase, pyrimidine binding domain EBB55_RS07810 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EBB55_RS07820 PF04960 Glutaminase EBB55_RS07825 PF13520 Amino acid permease EBB55_RS07830 PF00909 Ammonium Transporter Family EBB55_RS07840 PF04226 Transglycosylase associated protein EBB55_RS07845 PF03780 Asp23 family, cell envelope-related function EBB55_RS07865 PF11188 Protein of unknown function (DUF2975) EBB55_RS07870 PF13443 Cro/C1-type HTH DNA-binding domain EBB55_RS07885 PF04226 Transglycosylase associated protein EBB55_RS07890 PF03780 Asp23 family, cell envelope-related function EBB55_RS07920 PF01501 Glycosyl transferase family 8 EBB55_RS07925 PF01501 Glycosyl transferase family 8 EBB55_RS07955 PF01381 Helix-turn-helix EBB55_RS07970 PF00313 'Cold-shock' DNA-binding domain EBB55_RS07975 PF13419 Haloacid dehalogenase-like hydrolase EBB55_RS07980 PF03786 D-mannonate dehydratase (UxuA) EBB55_RS08000 PF03830 PTS system sorbose subfamily IIB component EBB55_RS08005 PF03613 PTS system mannose/fructose/sorbose family IID component EBB55_RS08015 PF00465 Iron-containing alcohol dehydrogenase EBB55_RS08025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EBB55_RS08025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EBB55_RS08030 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EBB55_RS08030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EBB55_RS08035 PF02685 Glucokinase EBB55_RS08035 PF01418 Helix-turn-helix domain, rpiR family EBB55_RS08035 PF01380 SIS domain EBB55_RS08045 PF00135 Carboxylesterase family EBB55_RS08050 PF12146 Serine aminopeptidase, S33 EBB55_RS08060 PF03960 ArsC family EBB55_RS08085 PF13145 PPIC-type PPIASE domain EBB55_RS08090 PF00923 Transaldolase/Fructose-6-phosphate aldolase EBB55_RS08105 PF07663 Sorbitol phosphotransferase enzyme II C-terminus EBB55_RS08105 PF03612 Sorbitol phosphotransferase enzyme II N-terminus EBB55_RS08110 PF03608 PTS system enzyme II sorbitol-specific factor EBB55_RS08120 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS08120 PF08279 HTH domain EBB55_RS08120 PF05043 Mga helix-turn-helix domain EBB55_RS08120 PF00874 PRD domain EBB55_RS08125 PF00106 short chain dehydrogenase EBB55_RS08160 PF00872 Transposase, Mutator family EBB55_RS08170 PF00589 Phage integrase family EBB55_RS08170 PF02899 Phage integrase, N-terminal SAM-like domain EBB55_RS08175 PF00679 Elongation factor G C-terminus EBB55_RS08175 PF00009 Elongation factor Tu GTP binding domain EBB55_RS08175 PF03144 Elongation factor Tu domain 2 EBB55_RS08175 PF06421 GTP-binding protein LepA C-terminus EBB55_RS08195 PF07724 AAA domain (Cdc48 subfamily) EBB55_RS08195 PF17871 AAA lid domain EBB55_RS08195 PF00004 ATPase family associated with various cellular activities (AAA) EBB55_RS08195 PF02861 Clp amino terminal domain, pathogenicity island component EBB55_RS08195 PF10431 C-terminal, D2-small domain, of ClpB protein EBB55_RS08210 PF00781 Diacylglycerol kinase catalytic domain EBB55_RS08215 PF07687 Peptidase dimerisation domain EBB55_RS08215 PF01546 Peptidase family M20/M25/M40 EBB55_RS08220 PF01784 NIF3 (NGG1p interacting factor 3) EBB55_RS08225 PF04816 tRNA (adenine(22)-N(1))-methyltransferase EBB55_RS08235 PF07319 Primosomal protein DnaI N-terminus EBB55_RS08235 PF01695 IstB-like ATP binding protein EBB55_RS08245 PF03477 ATP cone domain EBB55_RS08255 PF01121 Dephospho-CoA kinase EBB55_RS08260 PF06827 Zinc finger found in FPG and IleRS EBB55_RS08260 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EBB55_RS08260 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EBB55_RS08265 PF01367 5'-3' exonuclease, C-terminal SAM fold EBB55_RS08265 PF00476 DNA polymerase family A EBB55_RS08265 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EBB55_RS08270 PF01027 Inhibitor of apoptosis-promoting Bax1 EBB55_RS08280 PF02875 Mur ligase family, glutamate ligase domain EBB55_RS08280 PF08245 Mur ligase middle domain EBB55_RS08280 PF01225 Mur ligase family, catalytic domain EBB55_RS08285 PF02698 DUF218 domain EBB55_RS08290 PF10263 SprT-like family EBB55_RS08295 PF17674 HHH domain EBB55_RS08295 PF16921 Tex protein YqgF-like domain EBB55_RS08295 PF00575 S1 RNA binding domain EBB55_RS08295 PF09371 Tex-like protein N-terminal domain EBB55_RS08305 PF00581 Rhodanese-like domain EBB55_RS08305 PF12368 Rhodanase C-terminal EBB55_RS08305 PF17773 UPF0176 acylphosphatase like domain EBB55_RS08325 PF00375 Sodium:dicarboxylate symporter family EBB55_RS08335 PF13419 Haloacid dehalogenase-like hydrolase EBB55_RS08340 PF00300 Histidine phosphatase superfamily (branch 1) EBB55_RS08360 PF07556 Protein of unknown function (DUF1538) EBB55_RS08365 PF07556 Protein of unknown function (DUF1538) EBB55_RS08370 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS08375 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS08380 PF13416 Bacterial extracellular solute-binding protein EBB55_RS08385 PF12833 Helix-turn-helix domain EBB55_RS08385 PF00072 Response regulator receiver domain EBB55_RS08390 PF12833 Helix-turn-helix domain EBB55_RS08395 PF02743 Cache domain EBB55_RS08395 PF06580 Histidine kinase EBB55_RS08395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS08395 PF00672 HAMP domain EBB55_RS08400 PF00800 Prephenate dehydratase EBB55_RS08405 PF01202 Shikimate kinase EBB55_RS08410 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EBB55_RS08415 PF02153 Prephenate dehydrogenase EBB55_RS08415 PF01842 ACT domain EBB55_RS08420 PF01264 Chorismate synthase EBB55_RS08425 PF01761 3-dehydroquinate synthase EBB55_RS08430 PF00793 DAHP synthetase I family EBB55_RS08430 PF18152 DAHP synthase ferredoxin-like domain EBB55_RS08440 PF02929 Beta galactosidase small chain EBB55_RS08445 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EBB55_RS08445 PF02837 Glycosyl hydrolases family 2, sugar binding domain EBB55_RS08445 PF00703 Glycosyl hydrolases family 2 EBB55_RS08450 PF16874 Glycosyl hydrolase family 36 C-terminal domain EBB55_RS08450 PF16875 Glycosyl hydrolase family 36 N-terminal domain EBB55_RS08455 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS08465 PF01717 Cobalamin-independent synthase, Catalytic domain EBB55_RS08480 PF05958 tRNA (Uracil-5-)-methyltransferase EBB55_RS08485 PF00781 Diacylglycerol kinase catalytic domain EBB55_RS08490 PF02934 GatB/GatE catalytic domain EBB55_RS08490 PF02637 GatB domain EBB55_RS08495 PF01425 Amidase EBB55_RS08500 PF02686 Glu-tRNAGln amidotransferase C subunit EBB55_RS08505 PF00533 BRCA1 C Terminus (BRCT) domain EBB55_RS08505 PF12826 Helix-hairpin-helix motif EBB55_RS08505 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EBB55_RS08505 PF01653 NAD-dependent DNA ligase adenylation domain EBB55_RS08505 PF03120 NAD-dependent DNA ligase OB-fold domain EBB55_RS08510 PF13361 UvrD-like helicase C-terminal domain EBB55_RS08510 PF00580 UvrD/REP helicase N-terminal domain EBB55_RS08515 PF00654 Voltage gated chloride channel EBB55_RS08520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS08520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS08525 PF00294 pfkB family carbohydrate kinase EBB55_RS08530 PF08220 DeoR-like helix-turn-helix domain EBB55_RS08530 PF00455 DeoR C terminal sensor domain EBB55_RS08545 PF01926 50S ribosome-binding GTPase EBB55_RS08550 PF07724 AAA domain (Cdc48 subfamily) EBB55_RS08550 PF06689 ClpX C4-type zinc finger EBB55_RS08550 PF10431 C-terminal, D2-small domain, of ClpB protein EBB55_RS08555 PF05697 Bacterial trigger factor protein (TF) EBB55_RS08555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EBB55_RS08555 PF05698 Bacterial trigger factor protein (TF) C-terminus EBB55_RS08565 PF06271 RDD family EBB55_RS08570 PF01343 Peptidase family S49 EBB55_RS08580 PF01380 SIS domain EBB55_RS08585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EBB55_RS08585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EBB55_RS08585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EBB55_RS08585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EBB55_RS08595 PF02457 DisA bacterial checkpoint controller nucleotide-binding EBB55_RS08600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EBB55_RS08600 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg EBB55_RS08600 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II EBB55_RS08600 PF12838 4Fe-4S dicluster domain EBB55_RS08600 PF10371 Domain of unknown function EBB55_RS08600 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase EBB55_RS08625 PF10298 WhiA N-terminal LAGLIDADG-like domain EBB55_RS08625 PF14527 WhiA LAGLIDADG-like domain EBB55_RS08625 PF02650 WhiA C-terminal HTH domain EBB55_RS08630 PF01933 Uncharacterised protein family UPF0052 EBB55_RS08635 PF03668 P-loop ATPase protein family EBB55_RS08640 PF01177 Asp/Glu/Hydantoin racemase EBB55_RS08650 PF00005 ABC transporter EBB55_RS08650 PF17760 UvrA interaction domain EBB55_RS08650 PF17755 UvrA DNA-binding domain EBB55_RS08655 PF00271 Helicase conserved C-terminal domain EBB55_RS08655 PF17757 UvrB interaction domain EBB55_RS08655 PF12344 Ultra-violet resistance protein B EBB55_RS08655 PF02151 UvrB/uvrC motif EBB55_RS08655 PF04851 Type III restriction enzyme, res subunit EBB55_RS08660 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS08665 PF00005 ABC transporter EBB55_RS08670 PF00226 DnaJ domain EBB55_RS08670 PF01556 DnaJ C terminal domain EBB55_RS08670 PF00684 DnaJ central domain EBB55_RS08675 PF00012 Hsp70 protein EBB55_RS08680 PF01025 GrpE EBB55_RS08685 PF01628 HrcA protein C terminal domain EBB55_RS08690 PF04055 Radical SAM superfamily EBB55_RS08690 PF06969 HemN C-terminal domain EBB55_RS08705 PF13683 Integrase core domain EBB55_RS08705 PF01610 Transposase EBB55_RS08735 PF01965 DJ-1/PfpI family EBB55_RS08755 PF02016 LD-carboxypeptidase N-terminal domain EBB55_RS08755 PF17676 LD-carboxypeptidase C-terminal domain EBB55_RS08765 PF08818 Domain of unknown function (DU1801) EBB55_RS08770 PF12728 Helix-turn-helix domain EBB55_RS08775 PF06800 Sugar transport protein EBB55_RS08785 PF06574 FAD synthetase EBB55_RS08785 PF01687 Riboflavin kinase EBB55_RS08790 PF01509 TruB family pseudouridylate synthase (N terminal domain) EBB55_RS08790 PF16198 tRNA pseudouridylate synthase B C-terminal domain EBB55_RS08800 PF09364 XFP N-terminal domain EBB55_RS08800 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase EBB55_RS08800 PF09363 XFP C-terminal domain EBB55_RS08805 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS08810 PF02033 Ribosome-binding factor A EBB55_RS08815 PF04760 Translation initiation factor IF-2, N-terminal region EBB55_RS08815 PF11987 Translation-initiation factor 2 EBB55_RS08815 PF00009 Elongation factor Tu GTP binding domain EBB55_RS08820 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family EBB55_RS08825 PF04296 Protein of unknown function (DUF448) EBB55_RS08830 PF00575 S1 RNA binding domain EBB55_RS08830 PF08529 NusA N-terminal domain EBB55_RS08830 PF13184 NusA-like KH domain EBB55_RS08835 PF17384 RimP C-terminal SH3 domain EBB55_RS08835 PF02576 RimP N-terminal domain EBB55_RS08840 PF11490 DNA polymerase III polC-type N-terminus II EBB55_RS08840 PF14579 Helix-hairpin-helix motif EBB55_RS08840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EBB55_RS08840 PF07733 Bacterial DNA polymerase III alpha NTPase domain EBB55_RS08840 PF14480 DNA polymerase III polC-type N-terminus I EBB55_RS08840 PF00929 Exonuclease EBB55_RS08840 PF02811 PHP domain EBB55_RS08845 PF03129 Anticodon binding domain EBB55_RS08845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EBB55_RS08845 PF04073 Aminoacyl-tRNA editing domain EBB55_RS08850 PF02163 Peptidase family M50 EBB55_RS08850 PF17820 PDZ domain EBB55_RS08860 PF01255 Putative undecaprenyl diphosphate synthase EBB55_RS08870 PF01765 Ribosome recycling factor EBB55_RS08875 PF00696 Amino acid kinase family EBB55_RS08880 PF00889 Elongation factor TS EBB55_RS08885 PF00318 Ribosomal protein S2 EBB55_RS08890 PF01316 Arginine repressor, DNA binding domain EBB55_RS08890 PF02863 Arginine repressor, C-terminal domain EBB55_RS08895 PF00266 Aminotransferase class-V EBB55_RS08905 PF03485 Arginyl tRNA synthetase N terminal domain EBB55_RS08905 PF05746 DALR anticodon binding domain EBB55_RS08905 PF00750 tRNA synthetases class I (R) EBB55_RS08910 PF00696 Amino acid kinase family EBB55_RS08915 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EBB55_RS08915 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EBB55_RS08925 PF13545 Crp-like helix-turn-helix domain EBB55_RS08925 PF00027 Cyclic nucleotide-binding domain EBB55_RS08935 PF00814 Glycoprotease family EBB55_RS08940 PF00583 Acetyltransferase (GNAT) family EBB55_RS08945 PF00583 Acetyltransferase (GNAT) family EBB55_RS08950 PF00814 Glycoprotease family EBB55_RS08955 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS08960 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain EBB55_RS08960 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain EBB55_RS08965 PF16363 GDP-mannose 4,6 dehydratase EBB55_RS08980 PF04343 Protein of unknown function, DUF488 EBB55_RS08985 PF00581 Rhodanese-like domain EBB55_RS08990 PF00480 ROK family EBB55_RS09005 PF01812 5-formyltetrahydrofolate cyclo-ligase family EBB55_RS09010 PF01032 FecCD transport family EBB55_RS09015 PF01032 FecCD transport family EBB55_RS09020 PF00005 ABC transporter EBB55_RS09030 PF00186 Dihydrofolate reductase EBB55_RS09035 PF00471 Ribosomal protein L33 EBB55_RS09040 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) EBB55_RS09045 PF00733 Asparagine synthase EBB55_RS09045 PF13537 Glutamine amidotransferase domain EBB55_RS09050 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family EBB55_RS09065 PF00440 Bacterial regulatory proteins, tetR family EBB55_RS09065 PF08359 YsiA-like protein, C-terminal region EBB55_RS09085 PF02627 Carboxymuconolactone decarboxylase family EBB55_RS09100 PF03009 Glycerophosphoryl diester phosphodiesterase family EBB55_RS09125 PF00342 Phosphoglucose isomerase EBB55_RS09130 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain EBB55_RS09130 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase EBB55_RS09140 PF04073 Aminoacyl-tRNA editing domain EBB55_RS09145 PF01487 Type I 3-dehydroquinase EBB55_RS09150 PF10672 S-adenosylmethionine-dependent methyltransferase EBB55_RS09150 PF17785 PUA-like domain EBB55_RS09155 PF00884 Sulfatase EBB55_RS09180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS09180 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS09180 PF00672 HAMP domain EBB55_RS09185 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS09185 PF00072 Response regulator receiver domain EBB55_RS09235 PF00872 Transposase, Mutator family EBB55_RS09250 PF13185 GAF domain EBB55_RS09255 PF03306 Alpha-acetolactate decarboxylase EBB55_RS09260 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EBB55_RS09260 PF00205 Thiamine pyrophosphate enzyme, central domain EBB55_RS09260 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EBB55_RS09270 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS09280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EBB55_RS09280 PF03466 LysR substrate binding domain EBB55_RS09285 PF13411 MerR HTH family regulatory protein EBB55_RS09290 PF07690 Major Facilitator Superfamily EBB55_RS09360 PF02899 Phage integrase, N-terminal SAM-like domain EBB55_RS09360 PF00589 Phage integrase family EBB55_RS09385 PF13005 zinc-finger binding domain of transposase IS66 EBB55_RS09385 PF13007 Transposase C of IS166 homeodomain EBB55_RS09385 PF13817 IS66 C-terminal element EBB55_RS09385 PF03050 Transposase IS66 family EBB55_RS09410 PF00251 Glycosyl hydrolases family 32 N-terminal domain EBB55_RS09410 PF08244 Glycosyl hydrolases family 32 C terminal EBB55_RS09420 PF03610 PTS system fructose IIA component EBB55_RS09420 PF03830 PTS system sorbose subfamily IIB component EBB55_RS09425 PF03613 PTS system mannose/fructose/sorbose family IID component EBB55_RS09430 PF03609 PTS system sorbose-specific iic component EBB55_RS09435 PF03610 PTS system fructose IIA component EBB55_RS09435 PF00874 PRD domain EBB55_RS09435 PF00158 Sigma-54 interaction domain EBB55_RS09440 PF00480 ROK family EBB55_RS09445 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS09450 PF02378 Phosphotransferase system, EIIC EBB55_RS09450 PF00367 phosphotransferase system, EIIB EBB55_RS09460 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS09470 PF12802 MarR family EBB55_RS09485 PF01609 Transposase DDE domain EBB55_RS09495 PF01695 IstB-like ATP binding protein EBB55_RS09505 PF00877 NlpC/P60 family EBB55_RS09525 PF00872 Transposase, Mutator family EBB55_RS09540 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EBB55_RS09540 PF01348 Type II intron maturase EBB55_RS09580 PF18106 Rolling Circle replication initiation protein N-terminal domain EBB55_RS09580 PF02486 Replication initiation factor EBB55_RS09590 PF00145 C-5 cytosine-specific DNA methylase EBB55_RS09630 PF01245 Ribosomal protein L19 EBB55_RS09635 PF01746 tRNA (Guanine-1)-methyltransferase EBB55_RS09640 PF01782 RimM N-terminal domain EBB55_RS09640 PF05239 PRC-barrel domain EBB55_RS09655 PF00886 Ribosomal protein S16 EBB55_RS09660 PF03358 NADPH-dependent FMN reductase EBB55_RS09665 PF01872 RibD C-terminal domain EBB55_RS09670 PF00117 Glutamine amidotransferase class-I EBB55_RS09670 PF03352 Methyladenine glycosylase EBB55_RS09670 PF00958 GMP synthase C terminal domain EBB55_RS09670 PF13302 Acetyltransferase (GNAT) domain EBB55_RS09670 PF13673 Acetyltransferase (GNAT) domain EBB55_RS09675 PF02978 Signal peptide binding domain EBB55_RS09675 PF02881 SRP54-type protein, helical bundle domain EBB55_RS09675 PF00448 SRP54-type protein, GTPase domain EBB55_RS09680 PF04297 Putative helix-turn-helix protein, YlxM / p13 like EBB55_RS09690 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS09690 PF00072 Response regulator receiver domain EBB55_RS09695 PF00989 PAS fold EBB55_RS09695 PF16736 Single Cache-like EBB55_RS09695 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS09695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS09705 PF12849 PBP superfamily domain EBB55_RS09725 PF00872 Transposase, Mutator family EBB55_RS09730 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family EBB55_RS09775 PF07726 ATPase family associated with various cellular activities (AAA) EBB55_RS09775 PF17863 AAA lid domain EBB55_RS09785 PF01841 Transglutaminase-like superfamily EBB55_RS09785 PF13559 Domain of unknown function (DUF4129) EBB55_RS09785 PF11992 Domain of unknown function (DUF3488) EBB55_RS09795 PF00403 Heavy-metal-associated domain EBB55_RS09800 PF00403 Heavy-metal-associated domain EBB55_RS09805 PF03965 Penicillinase repressor EBB55_RS09815 PF13520 Amino acid permease EBB55_RS09820 PF00403 Heavy-metal-associated domain EBB55_RS09840 PF13472 GDSL-like Lipase/Acylhydrolase family EBB55_RS09850 PF00152 tRNA synthetases class II (D, K and N) EBB55_RS09850 PF01336 OB-fold nucleic acid binding domain EBB55_RS09855 PF00155 Aminotransferase class I and II EBB55_RS09865 PF00929 Exonuclease EBB55_RS09865 PF04851 Type III restriction enzyme, res subunit EBB55_RS09865 PF13307 Helicase C-terminal domain EBB55_RS09870 PF00313 'Cold-shock' DNA-binding domain EBB55_RS09895 PF07943 Penicillin-binding protein 5, C-terminal domain EBB55_RS09895 PF00768 D-alanyl-D-alanine carboxypeptidase EBB55_RS09905 PF00654 Voltage gated chloride channel EBB55_RS09925 PF08032 RNA 2'-O ribose methyltransferase substrate binding EBB55_RS09925 PF00588 SpoU rRNA Methylase family EBB55_RS09930 PF00708 Acylphosphatase EBB55_RS09940 PF02096 60Kd inner membrane protein EBB55_RS09945 PF01791 DeoC/LacD family aldolase EBB55_RS09980 PF00534 Glycosyl transferases group 1 EBB55_RS09980 PF13439 Glycosyltransferase Family 4 EBB55_RS10000 PF00535 Glycosyl transferase family 2 EBB55_RS10010 PF13439 Glycosyltransferase Family 4 EBB55_RS10010 PF00534 Glycosyl transferases group 1 EBB55_RS10025 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EBB55_RS10025 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EBB55_RS10025 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EBB55_RS10030 PF02397 Bacterial sugar transferase EBB55_RS10035 PF13936 Helix-turn-helix domain EBB55_RS10035 PF00665 Integrase core domain EBB55_RS10045 PF13614 AAA domain EBB55_RS10050 PF02706 Chain length determinant protein EBB55_RS10050 PF13807 G-rich domain on putative tyrosine kinase EBB55_RS10055 PF03816 Cell envelope-related transcriptional attenuator domain EBB55_RS10065 PF05746 DALR anticodon binding domain EBB55_RS10065 PF02092 Glycyl-tRNA synthetase beta subunit EBB55_RS10070 PF02091 Glycyl-tRNA synthetase alpha subunit EBB55_RS10075 PF02565 Recombination protein O C terminal EBB55_RS10075 PF11967 Recombination protein O N terminal EBB55_RS10080 PF01926 50S ribosome-binding GTPase EBB55_RS10080 PF07650 KH domain EBB55_RS10085 PF01219 Prokaryotic diacylglycerol kinase EBB55_RS10090 PF02130 Uncharacterized protein family UPF0054 EBB55_RS10095 PF07697 7TM-HD extracellular EBB55_RS10095 PF01966 HD domain EBB55_RS10095 PF07698 7TM receptor with intracellular HD hydrolase EBB55_RS10100 PF02562 PhoH-like protein EBB55_RS10105 PF05525 Branched-chain amino acid transport protein EBB55_RS10110 PF13683 Integrase core domain EBB55_RS10110 PF01610 Transposase EBB55_RS10115 PF13683 Integrase core domain EBB55_RS10115 PF01610 Transposase EBB55_RS10120 PF09424 Yqey-like protein EBB55_RS10125 PF01165 Ribosomal protein S21 EBB55_RS10130 PF01475 Ferric uptake regulator family EBB55_RS10135 PF03618 Kinase/pyrophosphorylase EBB55_RS10140 PF01022 Bacterial regulatory protein, arsR family EBB55_RS10145 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EBB55_RS10145 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EBB55_RS10145 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EBB55_RS10145 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EBB55_RS10150 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS10155 PF00232 Glycosyl hydrolase family 1 EBB55_RS10160 PF11975 Family 4 glycosyl hydrolase C-terminal domain EBB55_RS10160 PF02056 Family 4 glycosyl hydrolase EBB55_RS10170 PF01380 SIS domain EBB55_RS10170 PF01418 Helix-turn-helix domain, rpiR family EBB55_RS10175 PF02378 Phosphotransferase system, EIIC EBB55_RS10175 PF00367 phosphotransferase system, EIIB EBB55_RS10175 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS10185 PF00005 ABC transporter EBB55_RS10185 PF00664 ABC transporter transmembrane region EBB55_RS10190 PF00664 ABC transporter transmembrane region EBB55_RS10190 PF00005 ABC transporter EBB55_RS10195 PF03672 Uncharacterised protein family (UPF0154) EBB55_RS10205 PF01566 Natural resistance-associated macrophage protein EBB55_RS10215 PF01261 Xylose isomerase-like TIM barrel EBB55_RS10220 PF00912 Transglycosylase EBB55_RS10220 PF00905 Penicillin binding protein transpeptidase domain EBB55_RS10225 PF00872 Transposase, Mutator family EBB55_RS10260 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS10265 PF00557 Metallopeptidase family M24 EBB55_RS10265 PF01321 Creatinase/Prolidase N-terminal domain EBB55_RS10270 PF12732 YtxH-like protein EBB55_RS10280 PF00483 Nucleotidyl transferase EBB55_RS10285 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EBB55_RS10285 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EBB55_RS10290 PF01790 Prolipoprotein diacylglyceryl transferase EBB55_RS10295 PF02603 HPr Serine kinase N terminus EBB55_RS10295 PF07475 HPr Serine kinase C-terminal domain EBB55_RS10300 PF01610 Transposase EBB55_RS10300 PF13683 Integrase core domain EBB55_RS10305 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV EBB55_RS10330 PF01895 PhoU domain EBB55_RS10335 PF00005 ABC transporter EBB55_RS10340 PF00005 ABC transporter EBB55_RS10345 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS10350 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS10355 PF12849 PBP superfamily domain EBB55_RS10360 PF13091 PLD-like domain EBB55_RS10360 PF13396 Phospholipase_D-nuclease N-terminal EBB55_RS10365 PF02687 FtsX-like permease family EBB55_RS10365 PF18075 FtsX extracellular domain EBB55_RS10370 PF00005 ABC transporter EBB55_RS10380 PF07516 SecA Wing and Scaffold domain EBB55_RS10380 PF02810 SEC-C motif EBB55_RS10380 PF01043 SecA preprotein cross-linking domain EBB55_RS10380 PF07517 SecA DEAD-like domain EBB55_RS10385 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus EBB55_RS10385 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EBB55_RS10395 PF04851 Type III restriction enzyme, res subunit EBB55_RS10395 PF00271 Helicase conserved C-terminal domain EBB55_RS10400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS10410 PF09186 Domain of unknown function (DUF1949) EBB55_RS10410 PF01205 Uncharacterized protein family UPF0029 EBB55_RS10415 PF07702 UTRA domain EBB55_RS10415 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS10440 PF00480 ROK family EBB55_RS10450 PF01809 Putative membrane protein insertion efficiency factor EBB55_RS10460 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EBB55_RS10470 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EBB55_RS10470 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain EBB55_RS10475 PF02874 ATP synthase alpha/beta family, beta-barrel domain EBB55_RS10475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EBB55_RS10480 PF00231 ATP synthase EBB55_RS10485 PF02874 ATP synthase alpha/beta family, beta-barrel domain EBB55_RS10485 PF00306 ATP synthase alpha/beta chain, C terminal domain EBB55_RS10485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EBB55_RS10490 PF00213 ATP synthase delta (OSCP) subunit EBB55_RS10495 PF00430 ATP synthase B/B' CF(0) EBB55_RS10500 PF00137 ATP synthase subunit C EBB55_RS10505 PF00119 ATP synthase A chain EBB55_RS10510 PF01668 SmpB protein EBB55_RS10515 PF00575 S1 RNA binding domain EBB55_RS10515 PF17876 Cold shock domain EBB55_RS10515 PF00773 RNB domain EBB55_RS10515 PF08206 Ribonuclease B OB domain EBB55_RS10525 PF03840 Preprotein translocase SecG subunit EBB55_RS10530 PF14542 GCN5-related N-acetyl-transferase EBB55_RS10540 PF01156 Inosine-uridine preferring nucleoside hydrolase EBB55_RS10550 PF01546 Peptidase family M20/M25/M40 EBB55_RS10550 PF07687 Peptidase dimerisation domain EBB55_RS10560 PF00113 Enolase, C-terminal TIM barrel domain EBB55_RS10560 PF03952 Enolase, N-terminal domain EBB55_RS10565 PF00121 Triosephosphate isomerase EBB55_RS10570 PF00162 Phosphoglycerate kinase EBB55_RS10575 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EBB55_RS10575 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EBB55_RS10580 PF04198 Putative sugar-binding domain EBB55_RS10585 PF04552 Sigma-54, DNA binding domain EBB55_RS10585 PF00309 Sigma-54 factor, Activator interacting domain (AID) EBB55_RS10585 PF04963 Sigma-54 factor, core binding domain EBB55_RS10595 PF01522 Polysaccharide deacetylase EBB55_RS10600 PF13739 Deacetylase PdaC EBB55_RS10600 PF11738 Protein of unknown function (DUF3298) EBB55_RS10605 PF08281 Sigma-70, region 4 EBB55_RS10605 PF04542 Sigma-70 region 2 EBB55_RS10615 PF05066 HB1, ASXL, restriction endonuclease HTH domain EBB55_RS10625 PF03099 Biotin/lipoate A/B protein ligase family EBB55_RS10630 PF01966 HD domain EBB55_RS10640 PF00293 NUDIX domain EBB55_RS10645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EBB55_RS10650 PF02567 Phenazine biosynthesis-like protein EBB55_RS10655 PF02423 Ornithine cyclodeaminase/mu-crystallin family EBB55_RS10660 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS10660 PF00155 Aminotransferase class I and II EBB55_RS10665 PF02386 Cation transport protein EBB55_RS10670 PF01813 ATP synthase subunit D EBB55_RS10675 PF02874 ATP synthase alpha/beta family, beta-barrel domain EBB55_RS10675 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EBB55_RS10680 PF02874 ATP synthase alpha/beta family, beta-barrel domain EBB55_RS10680 PF16886 ATPsynthase alpha/beta subunit N-term extension EBB55_RS10680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EBB55_RS10685 PF01990 ATP synthase (F/14-kDa) subunit EBB55_RS10690 PF01992 ATP synthase (C/AC39) subunit EBB55_RS10700 PF00137 ATP synthase subunit C EBB55_RS10705 PF01496 V-type ATPase 116kDa subunit family EBB55_RS10715 PF07722 Peptidase C26 EBB55_RS10720 PF06874 Firmicute fructose-1,6-bisphosphatase EBB55_RS10730 PF00005 ABC transporter EBB55_RS10730 PF13732 Domain of unknown function (DUF4162) EBB55_RS10735 PF08459 UvrC Helix-hairpin-helix N-terminal EBB55_RS10735 PF01541 GIY-YIG catalytic domain EBB55_RS10735 PF02151 UvrB/uvrC motif EBB55_RS10740 PF00085 Thioredoxin EBB55_RS10745 PF00488 MutS domain V EBB55_RS10745 PF01713 Smr domain EBB55_RS10760 PF01351 Ribonuclease HII EBB55_RS10760 PF11858 Domain of unknown function (DUF3378) EBB55_RS10765 PF00395 S-layer homology domain EBB55_RS10765 PF01520 N-acetylmuramoyl-L-alanine amidase EBB55_RS10770 PF00440 Bacterial regulatory proteins, tetR family EBB55_RS10775 PF00005 ABC transporter EBB55_RS10785 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS10785 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS10820 PF01070 FMN-dependent dehydrogenase EBB55_RS10835 PF03949 Malic enzyme, NAD binding domain EBB55_RS10835 PF00390 Malic enzyme, N-terminal domain EBB55_RS10840 PF03390 2-hydroxycarboxylate transporter family EBB55_RS10855 PF06949 Protein of unknown function (DUF1292) EBB55_RS10860 PF03652 Holliday junction resolvase EBB55_RS10865 PF06135 IreB regulatory phosphoprotein EBB55_RS10895 PF00005 ABC transporter EBB55_RS10905 PF09323 Domain of unknown function (DUF1980) EBB55_RS10910 PF03773 Predicted permease EBB55_RS10915 PF00085 Thioredoxin EBB55_RS10920 PF06971 Putative DNA-binding protein N-terminus EBB55_RS10920 PF02629 CoA binding domain EBB55_RS10925 PF12848 ABC transporter EBB55_RS10925 PF16326 ABC transporter C-terminal domain EBB55_RS10925 PF00005 ABC transporter EBB55_RS10930 PF07470 Glycosyl Hydrolase Family 88 EBB55_RS10940 PF07470 Glycosyl Hydrolase Family 88 EBB55_RS10945 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS10950 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS10965 PF12833 Helix-turn-helix domain EBB55_RS10965 PF07883 Cupin domain EBB55_RS10970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS10970 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS10980 PF13167 GTP-binding GTPase N-terminal EBB55_RS10980 PF16360 GTP-binding GTPase Middle Region EBB55_RS10980 PF01926 50S ribosome-binding GTPase EBB55_RS10990 PF03009 Glycerophosphoryl diester phosphodiesterase family EBB55_RS11000 PF00574 Clp protease EBB55_RS11005 PF00132 Bacterial transferase hexapeptide (six repeats) EBB55_RS11015 PF00664 ABC transporter transmembrane region EBB55_RS11015 PF00005 ABC transporter EBB55_RS11020 PF00005 ABC transporter EBB55_RS11020 PF00664 ABC transporter transmembrane region EBB55_RS11025 PF07288 Protein of unknown function (DUF1447) EBB55_RS11030 PF17770 Ribonuclease J C-terminal domain EBB55_RS11030 PF00753 Metallo-beta-lactamase superfamily EBB55_RS11030 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EBB55_RS11040 PF00313 'Cold-shock' DNA-binding domain EBB55_RS11045 PF04002 RadC-like JAB domain EBB55_RS11050 PF13419 Haloacid dehalogenase-like hydrolase EBB55_RS11055 PF08245 Mur ligase middle domain EBB55_RS11055 PF02875 Mur ligase family, glutamate ligase domain EBB55_RS11060 PF00133 tRNA synthetases class I (I, L, M and V) EBB55_RS11060 PF08264 Anticodon-binding domain of tRNA EBB55_RS11060 PF10458 Valyl tRNA synthetase tRNA binding arm EBB55_RS11065 PF06971 Putative DNA-binding protein N-terminus EBB55_RS11065 PF02629 CoA binding domain EBB55_RS11070 PF02568 Thiamine biosynthesis protein (ThiI) EBB55_RS11070 PF02926 THUMP domain EBB55_RS11075 PF00266 Aminotransferase class-V EBB55_RS11080 PF06160 Septation ring formation regulator, EzrA EBB55_RS11095 PF01904 Protein of unknown function DUF72 EBB55_RS11100 PF00710 Asparaginase, N-terminal EBB55_RS11100 PF17763 Glutaminase/Asparaginase C-terminal domain EBB55_RS11110 PF03881 Fructosamine kinase EBB55_RS11115 PF03051 Peptidase C1-like family EBB55_RS11180 PF00575 S1 RNA binding domain EBB55_RS11185 PF00155 Aminotransferase class I and II EBB55_RS11190 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EBB55_RS11200 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS11205 PF04608 Phosphatidylglycerophosphatase A EBB55_RS11215 PF13344 Haloacid dehalogenase-like hydrolase EBB55_RS11220 PF06265 Protein of unknown function (DUF1027) EBB55_RS11225 PF02872 5'-nucleotidase, C-terminal domain EBB55_RS11240 PF14437 MafB19-like deaminase EBB55_RS11245 PF13556 PucR C-terminal helix-turn-helix domain EBB55_RS11255 PF17126 RsmF rRNA methyltransferase first C-terminal domain EBB55_RS11255 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF EBB55_RS11255 PF01189 16S rRNA methyltransferase RsmB/F EBB55_RS11270 PF04298 Putative neutral zinc metallopeptidase EBB55_RS11275 PF03831 PhnA domain EBB55_RS11275 PF08274 PhnA Zinc-Ribbon EBB55_RS11280 PF02272 DHHA1 domain EBB55_RS11280 PF01368 DHH family EBB55_RS11285 PF00571 CBS domain EBB55_RS11285 PF03061 Thioesterase superfamily EBB55_RS11285 PF07085 DRTGG domain EBB55_RS11285 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS11290 PF12706 Beta-lactamase superfamily domain EBB55_RS11300 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EBB55_RS11300 PF17770 Ribonuclease J C-terminal domain EBB55_RS11300 PF00753 Metallo-beta-lactamase superfamily EBB55_RS11310 PF12704 MacB-like periplasmic core domain EBB55_RS11310 PF02687 FtsX-like permease family EBB55_RS11315 PF00005 ABC transporter EBB55_RS11325 PF07282 Putative transposase DNA-binding domain EBB55_RS11325 PF01385 Probable transposase EBB55_RS11325 PF12323 Helix-turn-helix domain EBB55_RS11335 PF01979 Amidohydrolase family EBB55_RS11340 PF03606 C4-dicarboxylate anaerobic carrier EBB55_RS11345 PF13580 SIS domain EBB55_RS11355 PF00483 Nucleotidyl transferase EBB55_RS11360 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EBB55_RS11360 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EBB55_RS11365 PF13580 SIS domain EBB55_RS11370 PF01380 SIS domain EBB55_RS11375 PF03613 PTS system mannose/fructose/sorbose family IID component EBB55_RS11380 PF03609 PTS system sorbose-specific iic component EBB55_RS11385 PF03830 PTS system sorbose subfamily IIB component EBB55_RS11395 PF00874 PRD domain EBB55_RS11395 PF00158 Sigma-54 interaction domain EBB55_RS11405 PF00005 ABC transporter EBB55_RS11405 PF00664 ABC transporter transmembrane region EBB55_RS11410 PF00664 ABC transporter transmembrane region EBB55_RS11410 PF00005 ABC transporter EBB55_RS11420 PF02142 MGS-like domain EBB55_RS11425 PF00005 ABC transporter EBB55_RS11425 PF03459 TOBE domain EBB55_RS11425 PF17912 MalK OB fold domain EBB55_RS11435 PF00398 Ribosomal RNA adenine dimethylase EBB55_RS11440 PF13331 Domain of unknown function (DUF4093) EBB55_RS11440 PF01751 Toprim domain EBB55_RS11445 PF01026 TatD related DNase EBB55_RS11450 PF13520 Amino acid permease EBB55_RS11465 PF08264 Anticodon-binding domain of tRNA EBB55_RS11465 PF01588 Putative tRNA binding domain EBB55_RS11465 PF09334 tRNA synthetases class I (M) EBB55_RS11485 PF12323 Helix-turn-helix domain EBB55_RS11485 PF01385 Probable transposase EBB55_RS11485 PF07282 Putative transposase DNA-binding domain EBB55_RS11490 PF00005 ABC transporter EBB55_RS11490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EBB55_RS11495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EBB55_RS11495 PF00005 ABC transporter EBB55_RS11500 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS11500 PF12911 N-terminal TM domain of oligopeptide transport permease C EBB55_RS11505 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS11515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EBB55_RS11525 PF00583 Acetyltransferase (GNAT) family EBB55_RS11540 PF04055 Radical SAM superfamily EBB55_RS11545 PF09397 Ftsk gamma domain EBB55_RS11545 PF01580 FtsK/SpoIIIE family EBB55_RS11545 PF17854 FtsK alpha domain EBB55_RS11550 PF00232 Glycosyl hydrolase family 1 EBB55_RS11560 PF00497 Bacterial extracellular solute-binding proteins, family 3 EBB55_RS11565 PF00005 ABC transporter EBB55_RS11570 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS11580 PF17802 Prealbumin-like fold domain EBB55_RS11580 PF05737 Collagen binding domain EBB55_RS11580 PF05738 Cna protein B-type domain EBB55_RS11615 PF07859 alpha/beta hydrolase fold EBB55_RS11620 PF00464 Serine hydroxymethyltransferase EBB55_RS11625 PF01300 Telomere recombination EBB55_RS11625 PF03481 Putative GTP-binding controlling metal-binding EBB55_RS11635 PF05175 Methyltransferase small domain EBB55_RS11635 PF17827 PrmC N-terminal domain EBB55_RS11640 PF03462 PCRF domain EBB55_RS11640 PF00472 RF-1 domain EBB55_RS11645 PF00265 Thymidine kinase EBB55_RS11655 PF01209 ubiE/COQ5 methyltransferase family EBB55_RS11660 PF10502 Signal peptidase, peptidase S26 EBB55_RS11675 PF02677 Epoxyqueuosine reductase QueH EBB55_RS11680 PF02386 Cation transport protein EBB55_RS11685 PF08245 Mur ligase middle domain EBB55_RS11685 PF08353 Domain of unknown function (DUF1727) EBB55_RS11690 PF07685 CobB/CobQ-like glutamine amidotransferase domain EBB55_RS11695 PF08125 Mannitol dehydrogenase C-terminal domain EBB55_RS11695 PF01232 Mannitol dehydrogenase Rossmann domain EBB55_RS11700 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS11705 PF02378 Phosphotransferase system, EIIC EBB55_RS11705 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS11710 PF00005 ABC transporter EBB55_RS11720 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS11725 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS11725 PF08279 HTH domain EBB55_RS11725 PF05043 Mga helix-turn-helix domain EBB55_RS11730 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS11730 PF02378 Phosphotransferase system, EIIC EBB55_RS11735 PF01238 Phosphomannose isomerase type I EBB55_RS11740 PF00144 Beta-lactamase EBB55_RS11760 PF00664 ABC transporter transmembrane region EBB55_RS11760 PF00005 ABC transporter EBB55_RS11765 PF00664 ABC transporter transmembrane region EBB55_RS11765 PF00005 ABC transporter EBB55_RS11780 PF02525 Flavodoxin-like fold EBB55_RS11785 PF01594 AI-2E family transporter EBB55_RS11795 PF10282 Lactonase, 7-bladed beta-propeller EBB55_RS11805 PF00884 Sulfatase EBB55_RS11820 PF11762 L-arabinose isomerase C-terminal domain EBB55_RS11820 PF02610 L-arabinose isomerase EBB55_RS11825 PF00596 Class II Aldolase and Adducin N-terminal domain EBB55_RS11835 PF00083 Sugar (and other) transporter EBB55_RS11840 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS11845 PF04616 Glycosyl hydrolases family 43 EBB55_RS11845 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain EBB55_RS11850 PF06964 Alpha-L-arabinofuranosidase C-terminal domain EBB55_RS11860 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS11865 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS11875 PF06964 Alpha-L-arabinofuranosidase C-terminal domain EBB55_RS11885 PF02540 NAD synthase EBB55_RS11890 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EBB55_RS11890 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EBB55_RS11890 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain EBB55_RS11905 PF13411 MerR HTH family regulatory protein EBB55_RS11905 PF07739 TipAS antibiotic-recognition domain EBB55_RS11910 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EBB55_RS11910 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS11920 PF00872 Transposase, Mutator family EBB55_RS11925 PF00118 TCP-1/cpn60 chaperonin family EBB55_RS11930 PF00166 Chaperonin 10 Kd subunit EBB55_RS11940 PF02378 Phosphotransferase system, EIIC EBB55_RS11945 PF13460 NAD(P)H-binding EBB55_RS11950 PF00753 Metallo-beta-lactamase superfamily EBB55_RS11965 PF00672 HAMP domain EBB55_RS11965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS11965 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS11965 PF13426 PAS domain EBB55_RS11970 PF00072 Response regulator receiver domain EBB55_RS11970 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS11975 PF02645 Uncharacterised protein, DegV family COG1307 EBB55_RS12005 PF01721 Class II bacteriocin EBB55_RS12010 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS12015 PF00005 ABC transporter EBB55_RS12015 PF00571 CBS domain EBB55_RS12020 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS12020 PF07729 FCD domain EBB55_RS12035 PF07670 Nucleoside recognition EBB55_RS12035 PF07664 Ferrous iron transport protein B C terminus EBB55_RS12035 PF02421 Ferrous iron transport protein B EBB55_RS12035 PF17910 FeoB cytosolic helical domain EBB55_RS12045 PF00462 Glutaredoxin EBB55_RS12050 PF02867 Ribonucleotide reductase, barrel domain EBB55_RS12050 PF00317 Ribonucleotide reductase, all-alpha domain EBB55_RS12050 PF08343 Ribonucleotide reductase N-terminal EBB55_RS12055 PF00268 Ribonucleotide reductase, small chain EBB55_RS12060 PF01594 AI-2E family transporter EBB55_RS12065 PF02308 MgtC family EBB55_RS12070 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EBB55_RS12075 PF12848 ABC transporter EBB55_RS12075 PF00005 ABC transporter EBB55_RS12100 PF00542 Ribosomal protein L7/L12 C-terminal domain EBB55_RS12100 PF16320 Ribosomal protein L7/L12 dimerisation domain EBB55_RS12105 PF00466 Ribosomal protein L10 EBB55_RS12110 PF00687 Ribosomal protein L1p/L10e family EBB55_RS12115 PF03946 Ribosomal protein L11, N-terminal domain EBB55_RS12115 PF00298 Ribosomal protein L11, RNA binding domain EBB55_RS12120 PF01842 ACT domain EBB55_RS12120 PF03315 Serine dehydratase beta chain EBB55_RS12125 PF03313 Serine dehydratase alpha chain EBB55_RS12130 PF01070 FMN-dependent dehydrogenase EBB55_RS12135 PF00561 alpha/beta hydrolase fold EBB55_RS12140 PF00467 KOW motif EBB55_RS12140 PF02357 Transcription termination factor nusG EBB55_RS12145 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EBB55_RS12150 PF00471 Ribosomal protein L33 EBB55_RS12165 PF00781 Diacylglycerol kinase catalytic domain EBB55_RS12180 PF00005 ABC transporter EBB55_RS12185 PF07730 Histidine kinase EBB55_RS12190 PF00196 Bacterial regulatory proteins, luxR family EBB55_RS12190 PF00072 Response regulator receiver domain EBB55_RS12200 PF13538 UvrD-like helicase C-terminal domain EBB55_RS12200 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain EBB55_RS12200 PF14490 Helix-hairpin-helix containing domain EBB55_RS12210 PF00588 SpoU rRNA Methylase family EBB55_RS12215 PF01209 ubiE/COQ5 methyltransferase family EBB55_RS12220 PF03932 CutC family EBB55_RS12225 PF03448 MgtE intracellular N domain EBB55_RS12225 PF01769 Divalent cation transporter EBB55_RS12225 PF00571 CBS domain EBB55_RS12230 PF00849 RNA pseudouridylate synthase EBB55_RS12235 PF01513 ATP-NAD kinase EBB55_RS12240 PF04607 Region found in RelA / SpoT proteins EBB55_RS12245 PF01928 CYTH domain EBB55_RS12255 PF01610 Transposase EBB55_RS12255 PF13683 Integrase core domain EBB55_RS12260 PF01432 Peptidase family M3 EBB55_RS12260 PF08439 Oligopeptidase F EBB55_RS12270 PF05389 Negative regulator of genetic competence (MecA) EBB55_RS12275 PF03960 ArsC family EBB55_RS12285 PF04434 SWIM zinc finger EBB55_RS12285 PF00176 SNF2 family N-terminal domain EBB55_RS12285 PF00271 Helicase conserved C-terminal domain EBB55_RS12290 PF13476 AAA domain EBB55_RS12295 PF12320 Type 5 capsule protein repressor C-terminal domain EBB55_RS12295 PF00149 Calcineurin-like phosphoesterase EBB55_RS12300 PF01553 Acyltransferase EBB55_RS12305 PF05175 Methyltransferase small domain EBB55_RS12310 PF01541 GIY-YIG catalytic domain EBB55_RS12315 PF01757 Acyltransferase family EBB55_RS12320 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) EBB55_RS12320 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 EBB55_RS12325 PF01336 OB-fold nucleic acid binding domain EBB55_RS12325 PF00152 tRNA synthetases class II (D, K and N) EBB55_RS12325 PF02938 GAD domain EBB55_RS12330 PF03129 Anticodon binding domain EBB55_RS12330 PF13393 Histidyl-tRNA synthetase EBB55_RS12340 PF00248 Aldo/keto reductase family EBB55_RS12345 PF00067 Cytochrome P450 EBB55_RS12350 PF02580 D-Tyr-tRNA(Tyr) deacylase EBB55_RS12355 PF04607 Region found in RelA / SpoT proteins EBB55_RS12355 PF13291 ACT domain EBB55_RS12355 PF02824 TGS domain EBB55_RS12365 PF04452 RNA methyltransferase EBB55_RS12380 PF02245 Methylpurine-DNA glycosylase (MPG) EBB55_RS12385 PF05496 Holliday junction DNA helicase RuvB P-loop domain EBB55_RS12385 PF12002 MgsA AAA+ ATPase C terminal EBB55_RS12385 PF16193 AAA C-terminal domain EBB55_RS12400 PF00582 Universal stress protein family EBB55_RS12410 PF00005 ABC transporter EBB55_RS12410 PF16326 ABC transporter C-terminal domain EBB55_RS12410 PF12848 ABC transporter EBB55_RS12415 PF00871 Acetokinase family EBB55_RS12420 PF02384 N-6 DNA Methylase EBB55_RS12445 PF07963 Prokaryotic N-terminal methylation motif EBB55_RS12450 PF00482 Type II secretion system (T2SS), protein F EBB55_RS12455 PF00437 Type II/IV secretion system protein EBB55_RS12460 PF13382 Adenine deaminase C-terminal domain EBB55_RS12460 PF01979 Amidohydrolase family EBB55_RS12465 PF02390 Putative methyltransferase EBB55_RS12475 PF05975 Bacterial ABC transporter protein EcsB EBB55_RS12480 PF00005 ABC transporter EBB55_RS12485 PF01230 HIT domain EBB55_RS12495 PF13145 PPIC-type PPIASE domain EBB55_RS12500 PF01336 OB-fold nucleic acid binding domain EBB55_RS12500 PF01966 HD domain EBB55_RS12505 PF13514 AAA domain EBB55_RS12510 PF00149 Calcineurin-like phosphoesterase EBB55_RS12570 PF04616 Glycosyl hydrolases family 43 EBB55_RS12570 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain EBB55_RS12585 PF01738 Dienelactone hydrolase family EBB55_RS12590 PF00295 Glycosyl hydrolases family 28 EBB55_RS12595 PF07470 Glycosyl Hydrolase Family 88 EBB55_RS12600 PF13416 Bacterial extracellular solute-binding protein EBB55_RS12610 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS12615 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS12625 PF12833 Helix-turn-helix domain EBB55_RS12625 PF17853 GGDEF-like domain EBB55_RS12630 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS12635 PF08125 Mannitol dehydrogenase C-terminal domain EBB55_RS12635 PF01232 Mannitol dehydrogenase Rossmann domain EBB55_RS12640 PF08666 SAF domain EBB55_RS12640 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EBB55_RS12645 PF02614 Glucuronate isomerase EBB55_RS12650 PF00657 GDSL-like Lipase/Acylhydrolase EBB55_RS12660 PF00005 ABC transporter EBB55_RS12660 PF00664 ABC transporter transmembrane region EBB55_RS12665 PF06133 Control of competence regulator ComK, YlbF/YmcA EBB55_RS12670 PF00912 Transglycosylase EBB55_RS12670 PF00905 Penicillin binding protein transpeptidase domain EBB55_RS12675 PF01479 S4 domain EBB55_RS12675 PF00849 RNA pseudouridylate synthase EBB55_RS12680 PF00480 ROK family EBB55_RS12685 PF09261 Alpha mannosidase middle domain EBB55_RS12685 PF01074 Glycosyl hydrolases family 38 N-terminal domain EBB55_RS12685 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain EBB55_RS12685 PF07748 Glycosyl hydrolases family 38 C-terminal domain EBB55_RS12685 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 EBB55_RS12695 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS12710 PF12833 Helix-turn-helix domain EBB55_RS12710 PF00072 Response regulator receiver domain EBB55_RS12715 PF02743 Cache domain EBB55_RS12715 PF00672 HAMP domain EBB55_RS12715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS12715 PF06580 Histidine kinase EBB55_RS12730 PF12010 Domain of unknown function (DUF3502) EBB55_RS12735 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS12740 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS12750 PF00849 RNA pseudouridylate synthase EBB55_RS12750 PF01479 S4 domain EBB55_RS12755 PF01943 Polysaccharide biosynthesis protein EBB55_RS12755 PF14667 Polysaccharide biosynthesis C-terminal domain EBB55_RS12765 PF08245 Mur ligase middle domain EBB55_RS12765 PF02875 Mur ligase family, glutamate ligase domain EBB55_RS12770 PF02378 Phosphotransferase system, EIIC EBB55_RS12780 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit EBB55_RS12785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EBB55_RS12785 PF00874 PRD domain EBB55_RS12785 PF08279 HTH domain EBB55_RS12785 PF05043 Mga helix-turn-helix domain EBB55_RS12790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit EBB55_RS12835 PF13411 MerR HTH family regulatory protein EBB55_RS12835 PF06445 GyrI-like small molecule binding domain EBB55_RS12840 PF00005 ABC transporter EBB55_RS12840 PF00664 ABC transporter transmembrane region EBB55_RS12845 PF00005 ABC transporter EBB55_RS12845 PF00664 ABC transporter transmembrane region EBB55_RS12860 PF08264 Anticodon-binding domain of tRNA EBB55_RS12860 PF13603 Leucyl-tRNA synthetase, Domain 2 EBB55_RS12860 PF09334 tRNA synthetases class I (M) EBB55_RS12860 PF00133 tRNA synthetases class I (I, L, M and V) EBB55_RS12865 PF01476 LysM domain EBB55_RS12865 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EBB55_RS12870 PF01569 PAP2 superfamily EBB55_RS12875 PF04055 Radical SAM superfamily EBB55_RS12875 PF16199 Radical_SAM C-terminal domain EBB55_RS12880 PF06962 Putative rRNA methylase EBB55_RS12890 PF00872 Transposase, Mutator family EBB55_RS12930 PF00589 Phage integrase family EBB55_RS12930 PF14659 Phage integrase, N-terminal SAM-like domain EBB55_RS12935 PF00872 Transposase, Mutator family EBB55_RS12950 PF00005 ABC transporter EBB55_RS12950 PF00664 ABC transporter transmembrane region EBB55_RS12955 PF00005 ABC transporter EBB55_RS12955 PF00664 ABC transporter transmembrane region EBB55_RS12960 PF00440 Bacterial regulatory proteins, tetR family EBB55_RS12960 PF02909 Tetracyclin repressor-like, C-terminal domain EBB55_RS12970 PF07690 Major Facilitator Superfamily EBB55_RS12975 PF02773 S-adenosylmethionine synthetase, C-terminal domain EBB55_RS12975 PF02772 S-adenosylmethionine synthetase, central domain EBB55_RS12975 PF00438 S-adenosylmethionine synthetase, N-terminal domain EBB55_RS13135 PF00152 tRNA synthetases class II (D, K and N) EBB55_RS13135 PF01336 OB-fold nucleic acid binding domain EBB55_RS13140 PF01207 Dihydrouridine synthase (Dus) EBB55_RS13145 PF01430 Hsp33 protein EBB55_RS13150 PF01434 Peptidase family M41 EBB55_RS13150 PF06480 FtsH Extracellular EBB55_RS13150 PF17862 AAA+ lid domain EBB55_RS13150 PF00004 ATPase family associated with various cellular activities (AAA) EBB55_RS13155 PF00156 Phosphoribosyl transferase domain EBB55_RS13160 PF11734 TilS substrate C-terminal domain EBB55_RS13160 PF01171 PP-loop family EBB55_RS13165 PF00575 S1 RNA binding domain EBB55_RS13175 PF01479 S4 domain EBB55_RS13180 PF01943 Polysaccharide biosynthesis protein EBB55_RS13180 PF14667 Polysaccharide biosynthesis C-terminal domain EBB55_RS13185 PF00270 DEAD/DEAH box helicase EBB55_RS13185 PF03461 TRCF domain EBB55_RS13185 PF00271 Helicase conserved C-terminal domain EBB55_RS13185 PF02559 CarD-like/TRCF domain EBB55_RS13185 PF17757 UvrB interaction domain EBB55_RS13190 PF01195 Peptidyl-tRNA hydrolase EBB55_RS13195 PF00056 lactate/malate dehydrogenase, NAD binding domain EBB55_RS13195 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EBB55_RS13205 PF01709 Transcriptional regulator EBB55_RS13220 PF00877 NlpC/P60 family EBB55_RS13230 PF04085 rod shape-determining protein MreC EBB55_RS13240 PF00834 Ribulose-phosphate 3 epimerase family EBB55_RS13245 PF03193 RsgA GTPase EBB55_RS13245 PF16745 RsgA N-terminal domain EBB55_RS13250 PF03793 PASTA domain EBB55_RS13250 PF00069 Protein kinase domain EBB55_RS13260 PF01189 16S rRNA methyltransferase RsmB/F EBB55_RS13260 PF01029 NusB family EBB55_RS13265 PF02911 Formyl transferase, C-terminal domain EBB55_RS13265 PF00551 Formyl transferase EBB55_RS13270 PF01327 Polypeptide deformylase EBB55_RS13275 PF17764 3′ DNA-binding domain (3′BD) EBB55_RS13275 PF18074 Primosomal protein N C-terminal domain EBB55_RS13275 PF00271 Helicase conserved C-terminal domain EBB55_RS13275 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EBB55_RS13275 PF04851 Type III restriction enzyme, res subunit EBB55_RS13280 PF01192 RNA polymerase Rpb6 EBB55_RS13285 PF00625 Guanylate kinase EBB55_RS13290 PF13007 Transposase C of IS166 homeodomain EBB55_RS13290 PF13817 IS66 C-terminal element EBB55_RS13290 PF03050 Transposase IS66 family EBB55_RS13290 PF13005 zinc-finger binding domain of transposase IS66 EBB55_RS13310 PF08340 Domain of unknown function (DUF1732) EBB55_RS13310 PF03755 YicC-like family, N-terminal region EBB55_RS13320 PF01734 Patatin-like phospholipase EBB55_RS13335 PF09515 Thiamine transporter protein (Thia_YuaJ) EBB55_RS13340 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EBB55_RS13340 PF14572 Phosphoribosyl synthetase-associated domain EBB55_RS13345 PF00483 Nucleotidyl transferase EBB55_RS13345 PF00132 Bacterial transferase hexapeptide (six repeats) EBB55_RS13350 PF09182 Bacterial purine repressor, N-terminal EBB55_RS13350 PF00156 Phosphoribosyl transferase domain EBB55_RS13355 PF00950 ABC 3 transport family EBB55_RS13360 PF00005 ABC transporter EBB55_RS13365 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment EBB55_RS13365 PF01297 Zinc-uptake complex component A periplasmic EBB55_RS13370 PF00288 GHMP kinases N terminal domain EBB55_RS13370 PF08544 GHMP kinases C terminal EBB55_RS13375 PF03706 Lysylphosphatidylglycerol synthase TM region EBB55_RS13375 PF09924 Uncharacterised conserved protein (DUF2156) EBB55_RS13380 PF03807 NADP oxidoreductase coenzyme F420-dependent EBB55_RS13380 PF14748 Pyrroline-5-carboxylate reductase dimerisation EBB55_RS13385 PF00013 KH domain EBB55_RS13385 PF01966 HD domain EBB55_RS13385 PF12072 Domain of unknown function (DUF3552) EBB55_RS13390 PF00154 recA bacterial DNA recombination protein EBB55_RS13395 PF18146 Damage-inducible protein CinA KH domain EBB55_RS13395 PF02464 Competence-damaged protein EBB55_RS13395 PF00994 Probable molybdopterin binding domain EBB55_RS13400 PF01066 CDP-alcohol phosphatidyltransferase EBB55_RS13410 PF13464 Domain of unknown function (DUF4115) EBB55_RS13415 PF05193 Peptidase M16 inactive domain EBB55_RS13415 PF00675 Insulinase (Peptidase family M16) EBB55_RS13420 PF05193 Peptidase M16 inactive domain EBB55_RS13425 PF01741 Large-conductance mechanosensitive channel, MscL EBB55_RS13430 PF13673 Acetyltransferase (GNAT) domain EBB55_RS13435 PF06257 Biofilm formation stimulator VEG EBB55_RS13445 PF05991 YacP-like NYN domain EBB55_RS13450 PF00588 SpoU rRNA Methylase family EBB55_RS13450 PF08032 RNA 2'-O ribose methyltransferase substrate binding EBB55_RS13455 PF00636 Ribonuclease III domain EBB55_RS13460 PF09190 DALR domain EBB55_RS13460 PF01406 tRNA synthetases class I (C) catalytic domain EBB55_RS13465 PF00132 Bacterial transferase hexapeptide (six repeats) EBB55_RS13465 PF06426 Serine acetyltransferase, N-terminal EBB55_RS13470 PF00749 tRNA synthetases class I (E and Q), catalytic domain EBB55_RS13480 PF18073 Rubredoxin metal binding domain EBB55_RS13485 PF00692 dUTPase EBB55_RS13490 PF00696 Amino acid kinase family EBB55_RS13495 PF00171 Aldehyde dehydrogenase family EBB55_RS13535 PF00005 ABC transporter EBB55_RS13545 PF00881 Nitroreductase family EBB55_RS13555 PF01476 LysM domain EBB55_RS13555 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EBB55_RS13560 PF00106 short chain dehydrogenase EBB55_RS13565 PF00132 Bacterial transferase hexapeptide (six repeats) EBB55_RS13565 PF14602 Hexapeptide repeat of succinyl-transferase EBB55_RS13565 PF12464 Maltose acetyltransferase EBB55_RS13570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EBB55_RS13570 PF03466 LysR substrate binding domain EBB55_RS13575 PF03123 CAT RNA binding domain EBB55_RS13575 PF00874 PRD domain EBB55_RS13580 PF00367 phosphotransferase system, EIIB EBB55_RS13580 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS13580 PF02378 Phosphotransferase system, EIIC EBB55_RS13585 PF05368 NmrA-like family EBB55_RS13600 PF06445 GyrI-like small molecule binding domain EBB55_RS13600 PF12833 Helix-turn-helix domain EBB55_RS13610 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EBB55_RS13610 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EBB55_RS13615 PF03591 AzlC protein EBB55_RS13625 PF08240 Alcohol dehydrogenase GroES-like domain EBB55_RS13625 PF00107 Zinc-binding dehydrogenase EBB55_RS13640 PF01207 Dihydrouridine synthase (Dus) EBB55_RS13650 PF01061 ABC-2 type transporter EBB55_RS13655 PF00005 ABC transporter EBB55_RS13660 PF01624 MutS domain I EBB55_RS13660 PF05190 MutS family domain IV EBB55_RS13660 PF00488 MutS domain V EBB55_RS13660 PF05188 MutS domain II EBB55_RS13660 PF05192 MutS domain III EBB55_RS13665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS13665 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS13670 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS13670 PF00072 Response regulator receiver domain EBB55_RS13680 PF00005 ABC transporter EBB55_RS13705 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS13705 PF07702 UTRA domain EBB55_RS13710 PF13419 Haloacid dehalogenase-like hydrolase EBB55_RS13715 PF03613 PTS system mannose/fructose/sorbose family IID component EBB55_RS13720 PF03609 PTS system sorbose-specific iic component EBB55_RS13725 PF03830 PTS system sorbose subfamily IIB component EBB55_RS13730 PF03610 PTS system fructose IIA component EBB55_RS13735 PF01380 SIS domain EBB55_RS13785 PF03432 Relaxase/Mobilisation nuclease domain EBB55_RS13860 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EBB55_RS13860 PF01348 Type II intron maturase EBB55_RS13875 PF00145 C-5 cytosine-specific DNA methylase EBB55_RS13885 PF18106 Rolling Circle replication initiation protein N-terminal domain EBB55_RS13885 PF02486 Replication initiation factor EBB55_RS13895 PF01348 Type II intron maturase EBB55_RS13895 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EBB55_RS13945 PF00877 NlpC/P60 family EBB55_RS13980 PF05257 CHAP domain EBB55_RS13980 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EBB55_RS13985 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS13985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS13990 PF04650 YSIRK type signal peptide EBB55_RS13990 PF00746 LPXTG cell wall anchor motif EBB55_RS13990 PF17480 AlphaC C-terminal EBB55_RS13990 PF08829 Alpha C protein N terminal EBB55_RS14000 PF12833 Helix-turn-helix domain EBB55_RS14035 PF13683 Integrase core domain EBB55_RS14035 PF01610 Transposase EBB55_RS14065 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment EBB55_RS14065 PF01297 Zinc-uptake complex component A periplasmic EBB55_RS14075 PF07683 Cobalamin synthesis protein cobW C-terminal domain EBB55_RS14075 PF02492 CobW/HypB/UreG, nucleotide-binding domain EBB55_RS14080 PF00471 Ribosomal protein L33 EBB55_RS14090 PF01783 Ribosomal L32p protein family EBB55_RS14095 PF00253 Ribosomal protein S14p/S29e EBB55_RS14100 PF00005 ABC transporter EBB55_RS14100 PF00664 ABC transporter transmembrane region EBB55_RS14105 PF00664 ABC transporter transmembrane region EBB55_RS14105 PF00005 ABC transporter EBB55_RS14115 PF00005 ABC transporter EBB55_RS14125 PF00440 Bacterial regulatory proteins, tetR family EBB55_RS14135 PF01297 Zinc-uptake complex component A periplasmic EBB55_RS14140 PF00950 ABC 3 transport family EBB55_RS14145 PF00005 ABC transporter EBB55_RS14155 PF00474 Sodium:solute symporter family EBB55_RS14160 PF01261 Xylose isomerase-like TIM barrel EBB55_RS14165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EBB55_RS14165 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EBB55_RS14170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EBB55_RS14170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EBB55_RS14175 PF00465 Iron-containing alcohol dehydrogenase EBB55_RS14180 PF00171 Aldehyde dehydrogenase family EBB55_RS14190 PF04962 KduI/IolB family EBB55_RS14195 PF00205 Thiamine pyrophosphate enzyme, central domain EBB55_RS14195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EBB55_RS14195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EBB55_RS14200 PF00294 pfkB family carbohydrate kinase EBB55_RS14205 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS14220 PF02423 Ornithine cyclodeaminase/mu-crystallin family EBB55_RS14230 PF01978 Sugar-specific transcriptional regulator TrmB EBB55_RS14230 PF11495 Archaeal transcriptional regulator TrmB EBB55_RS14255 PF00589 Phage integrase family EBB55_RS14255 PF02899 Phage integrase, N-terminal SAM-like domain EBB55_RS14260 PF00380 Ribosomal protein S9/S16 EBB55_RS14265 PF00572 Ribosomal protein L13 EBB55_RS14270 PF00210 Ferritin-like domain EBB55_RS14275 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EBB55_RS14275 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EBB55_RS14280 PF01478 Type IV leader peptidase family EBB55_RS14280 PF06750 Bacterial Peptidase A24 N-terminal domain EBB55_RS14285 PF01625 Peptide methionine sulfoxide reductase EBB55_RS14290 PF13419 Haloacid dehalogenase-like hydrolase EBB55_RS14295 PF02595 Glycerate kinase family EBB55_RS14300 PF03633 Glycosyl hydrolase family 65, C-terminal domain EBB55_RS14300 PF03636 Glycosyl hydrolase family 65, N-terminal domain EBB55_RS14300 PF03632 Glycosyl hydrolase family 65 central catalytic domain EBB55_RS14305 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EBB55_RS14305 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EBB55_RS14310 PF01261 Xylose isomerase-like TIM barrel EBB55_RS14315 PF00107 Zinc-binding dehydrogenase EBB55_RS14320 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS14325 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS14330 PF01547 Bacterial extracellular solute-binding protein EBB55_RS14335 PF00128 Alpha amylase, catalytic domain EBB55_RS14340 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS14340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EBB55_RS14345 PF04997 RNA polymerase Rpb1, domain 1 EBB55_RS14345 PF04983 RNA polymerase Rpb1, domain 3 EBB55_RS14345 PF00623 RNA polymerase Rpb1, domain 2 EBB55_RS14345 PF05000 RNA polymerase Rpb1, domain 4 EBB55_RS14345 PF04998 RNA polymerase Rpb1, domain 5 EBB55_RS14350 PF04561 RNA polymerase Rpb2, domain 2 EBB55_RS14350 PF04565 RNA polymerase Rpb2, domain 3 EBB55_RS14350 PF04560 RNA polymerase Rpb2, domain 7 EBB55_RS14350 PF00562 RNA polymerase Rpb2, domain 6 EBB55_RS14350 PF10385 RNA polymerase beta subunit external 1 domain EBB55_RS14350 PF04563 RNA polymerase beta subunit EBB55_RS14365 PF02653 Branched-chain amino acid transport system / permease component EBB55_RS14370 PF00005 ABC transporter EBB55_RS14380 PF03099 Biotin/lipoate A/B protein ligase family EBB55_RS14380 PF02237 Biotin protein ligase C terminal domain EBB55_RS14380 PF08279 HTH domain EBB55_RS14395 PF00348 Polyprenyl synthetase EBB55_RS14410 PF01610 Transposase EBB55_RS14410 PF13683 Integrase core domain EBB55_RS14420 PF04205 FMN-binding domain EBB55_RS14425 PF02424 ApbE family EBB55_RS14435 PF07992 Pyridine nucleotide-disulphide oxidoreductase EBB55_RS14435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EBB55_RS14440 PF16325 Peptidase family U32 C-terminal domain EBB55_RS14440 PF01136 Peptidase family U32 EBB55_RS14445 PF01136 Peptidase family U32 EBB55_RS14450 PF17871 AAA lid domain EBB55_RS14450 PF07724 AAA domain (Cdc48 subfamily) EBB55_RS14450 PF00004 ATPase family associated with various cellular activities (AAA) EBB55_RS14450 PF10431 C-terminal, D2-small domain, of ClpB protein EBB55_RS14450 PF02861 Clp amino terminal domain, pathogenicity island component EBB55_RS14455 PF17727 CtsR C-terminal dimerization domain EBB55_RS14455 PF05848 CtsR N-terminal HTH domain EBB55_RS14525 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS14525 PF00072 Response regulator receiver domain EBB55_RS14530 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS14530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS14530 PF13426 PAS domain EBB55_RS14530 PF00672 HAMP domain EBB55_RS14535 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EBB55_RS14535 PF02403 Seryl-tRNA synthetase N-terminal domain EBB55_RS14545 PF00478 IMP dehydrogenase / GMP reductase domain EBB55_RS14545 PF00571 CBS domain EBB55_RS14560 PF06071 Protein of unknown function (DUF933) EBB55_RS14560 PF01926 50S ribosome-binding GTPase EBB55_RS14565 PF06107 Bacterial protein of unknown function (DUF951) EBB55_RS14570 PF02195 ParB-like nuclease domain EBB55_RS14570 PF17762 HTH domain found in ParB protein EBB55_RS14575 PF13614 AAA domain EBB55_RS14580 PF02527 rRNA small subunit methyltransferase G EBB55_RS14585 PF01134 Glucose inhibited division protein A EBB55_RS14585 PF13932 GidA associated domain EBB55_RS14590 PF01926 50S ribosome-binding GTPase EBB55_RS14590 PF10396 GTP-binding protein TrmE N-terminus EBB55_RS14590 PF12631 MnmE helical domain EBB55_RS14600 PF01424 R3H domain EBB55_RS14600 PF14804 Jag N-terminus EBB55_RS14605 PF02096 60Kd inner membrane protein EBB55_RS14610 PF00825 Ribonuclease P EBB55_RS14615 PF00468 Ribosomal protein L34 EBB55_RS14625 PF02569 Pantoate-beta-alanine ligase EBB55_RS14630 PF02261 Aspartate decarboxylase EBB55_RS14665 PF02687 FtsX-like permease family EBB55_RS14665 PF12704 MacB-like periplasmic core domain EBB55_RS14665 PF00005 ABC transporter EBB55_RS14690 PF00872 Transposase, Mutator family EBB55_RS14700 PF13186 Iron-sulfur cluster-binding domain EBB55_RS14700 PF04055 Radical SAM superfamily EBB55_RS14705 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS14705 PF07702 UTRA domain EBB55_RS14710 PF01301 Glycosyl hydrolases family 35 EBB55_RS14720 PF07282 Putative transposase DNA-binding domain EBB55_RS14720 PF01385 Probable transposase EBB55_RS14720 PF12323 Helix-turn-helix domain EBB55_RS14725 PF03830 PTS system sorbose subfamily IIB component EBB55_RS14755 PF00872 Transposase, Mutator family EBB55_RS14760 PF00884 Sulfatase EBB55_RS14760 PF16347 Domain of unknown function (DUF4976) EBB55_RS14770 PF00872 Transposase, Mutator family EBB55_RS14775 PF00872 Transposase, Mutator family EBB55_RS14785 PF00872 Transposase, Mutator family EBB55_RS14800 PF07702 UTRA domain EBB55_RS14800 PF00392 Bacterial regulatory proteins, gntR family EBB55_RS14805 PF01380 SIS domain EBB55_RS14810 PF01791 DeoC/LacD family aldolase EBB55_RS14820 PF02378 Phosphotransferase system, EIIC EBB55_RS14830 PF00589 Phage integrase family EBB55_RS14830 PF13495 Phage integrase, N-terminal SAM-like domain EBB55_RS14880 PF02378 Phosphotransferase system, EIIC EBB55_RS14880 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS14880 PF00367 phosphotransferase system, EIIB EBB55_RS14885 PF02378 Phosphotransferase system, EIIC EBB55_RS14885 PF00367 phosphotransferase system, EIIB EBB55_RS14885 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS14890 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase EBB55_RS14895 PF01380 SIS domain EBB55_RS14895 PF01418 Helix-turn-helix domain, rpiR family EBB55_RS14900 PF02796 Helix-turn-helix domain of resolvase EBB55_RS14900 PF00239 Resolvase, N terminal domain EBB55_RS14915 PF01797 Transposase IS200 like EBB55_RS14925 PF00356 Bacterial regulatory proteins, lacI family EBB55_RS14930 PF00251 Glycosyl hydrolases family 32 N-terminal domain EBB55_RS14930 PF08244 Glycosyl hydrolases family 32 C terminal EBB55_RS14935 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 EBB55_RS14935 PF00367 phosphotransferase system, EIIB EBB55_RS14935 PF02378 Phosphotransferase system, EIIC EBB55_RS14940 PF00480 ROK family EBB55_RS14975 PF13007 Transposase C of IS166 homeodomain EBB55_RS14975 PF13817 IS66 C-terminal element EBB55_RS14975 PF13005 zinc-finger binding domain of transposase IS66 EBB55_RS14975 PF03050 Transposase IS66 family EBB55_RS14985 PF00834 Ribulose-phosphate 3 epimerase family EBB55_RS15000 PF03611 PTS system sugar-specific permease component EBB55_RS15015 PF00872 Transposase, Mutator family EBB55_RS15025 PF09221 Bacteriocin class IId cyclical uberolysin-like EBB55_RS15110 PF01131 DNA topoisomerase EBB55_RS15110 PF01751 Toprim domain EBB55_RS15115 PF13154 Protein of unknown function (DUF3991) EBB55_RS15120 PF18840 Large polyvalent protein associated domain 25 EBB55_RS15135 PF17400 Family of unknown function (DUF5406) EBB55_RS15170 PF13610 DDE domain EBB55_RS15180 PF01923 Cobalamin adenosyltransferase EBB55_RS15195 PF13610 DDE domain EBB55_RS15200 PF13614 AAA domain EBB55_RS15235 PF02796 Helix-turn-helix domain of resolvase EBB55_RS15235 PF00239 Resolvase, N terminal domain EBB55_RS15245 PF13610 DDE domain EBB55_RS15260 PF08924 Domain of unknown function (DUF1906) EBB55_RS15260 PF01471 Putative peptidoglycan binding domain EBB55_RS15270 PF00872 Transposase, Mutator family EBB55_RS15280 PF02796 Helix-turn-helix domain of resolvase EBB55_RS15280 PF00239 Resolvase, N terminal domain EBB55_RS15285 PF12826 Helix-hairpin-helix motif EBB55_RS15285 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EBB55_RS15285 PF03120 NAD-dependent DNA ligase OB-fold domain EBB55_RS15285 PF01653 NAD-dependent DNA ligase adenylation domain EBB55_RS15285 PF00533 BRCA1 C Terminus (BRCT) domain EBB55_RS15290 PF13610 DDE domain EBB55_RS15300 PF00696 Amino acid kinase family EBB55_RS15335 PF13610 DDE domain EBB55_RS15355 PF08534 Redoxin EBB55_RS15375 PF00005 ABC transporter EBB55_RS15385 PF00872 Transposase, Mutator family EBB55_RS15410 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS15415 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS15420 PF00005 ABC transporter EBB55_RS15420 PF08402 TOBE domain EBB55_RS15445 PF01610 Transposase EBB55_RS15445 PF13683 Integrase core domain EBB55_RS15450 PF02805 Metal binding domain of Ada EBB55_RS15450 PF12833 Helix-turn-helix domain EBB55_RS15455 PF06580 Histidine kinase EBB55_RS15455 PF07694 5TMR of 5TMR-LYT EBB55_RS15460 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS15465 PF00528 Binding-protein-dependent transport system inner membrane component EBB55_RS15470 PF12010 Domain of unknown function (DUF3502) EBB55_RS15485 PF02929 Beta galactosidase small chain EBB55_RS15485 PF02837 Glycosyl hydrolases family 2, sugar binding domain EBB55_RS15485 PF02836 Glycosyl hydrolases family 2, TIM barrel domain EBB55_RS15485 PF16353 Domain of unknown function(DUF4981) EBB55_RS15485 PF00703 Glycosyl hydrolases family 2 EBB55_RS15490 PF00754 F5/8 type C domain EBB55_RS15490 PF00041 Fibronectin type III domain EBB55_RS15490 PF07555 beta-N-acetylglucosaminidase EBB55_RS15490 PF00963 Cohesin domain EBB55_RS15490 PF02838 Glycosyl hydrolase family 20, domain 2 EBB55_RS15500 PF03050 Transposase IS66 family EBB55_RS15500 PF13817 IS66 C-terminal element EBB55_RS15500 PF13007 Transposase C of IS166 homeodomain EBB55_RS15500 PF13005 zinc-finger binding domain of transposase IS66 EBB55_RS15515 PF00958 GMP synthase C terminal domain EBB55_RS15515 PF00117 Glutamine amidotransferase class-I EBB55_RS15515 PF02540 NAD synthase EBB55_RS15520 PF13683 Integrase core domain EBB55_RS15520 PF01610 Transposase EBB55_RS15530 PF00072 Response regulator receiver domain EBB55_RS15530 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS15535 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS15535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS15535 PF00672 HAMP domain EBB55_RS15540 PF00872 Transposase, Mutator family EBB55_RS15545 PF00872 Transposase, Mutator family EBB55_RS15555 PF02548 Ketopantoate hydroxymethyltransferase EBB55_RS15560 PF18008 Replication initiator protein A C-terminal domain EBB55_RS15560 PF06970 Replication initiator protein A (RepA) N-terminus EBB55_RS15575 PF17400 Family of unknown function (DUF5406) EBB55_RS15600 PF13610 DDE domain EBB55_RS15625 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) EBB55_RS15700 PF18840 Large polyvalent protein associated domain 25 EBB55_RS15705 PF13154 Protein of unknown function (DUF3991) EBB55_RS15710 PF01751 Toprim domain EBB55_RS15710 PF01131 DNA topoisomerase EBB55_RS15725 PF00436 Single-strand binding protein family EBB55_RS15745 PF13005 zinc-finger binding domain of transposase IS66 EBB55_RS15745 PF13007 Transposase C of IS166 homeodomain EBB55_RS15745 PF13817 IS66 C-terminal element EBB55_RS15745 PF03050 Transposase IS66 family EBB55_RS15750 PF13610 DDE domain EBB55_RS15790 PF13610 DDE domain EBB55_RS15805 PF02796 Helix-turn-helix domain of resolvase EBB55_RS15805 PF00239 Resolvase, N terminal domain EBB55_RS15820 PF00239 Resolvase, N terminal domain EBB55_RS15820 PF02796 Helix-turn-helix domain of resolvase EBB55_RS15825 PF00817 impB/mucB/samB family EBB55_RS15825 PF11799 impB/mucB/samB family C-terminal domain EBB55_RS15825 PF11798 IMS family HHH motif EBB55_RS15845 PF13614 AAA domain EBB55_RS15870 PF12323 Helix-turn-helix domain EBB55_RS15870 PF01385 Probable transposase EBB55_RS15870 PF07282 Putative transposase DNA-binding domain EBB55_RS15895 PF03432 Relaxase/Mobilisation nuclease domain EBB55_RS15905 PF00005 ABC transporter EBB55_RS15930 PF13610 DDE domain EBB55_RS15935 PF02661 Fic/DOC family EBB55_RS15940 PF00239 Resolvase, N terminal domain EBB55_RS15940 PF02796 Helix-turn-helix domain of resolvase EBB55_RS15950 PF13333 Integrase core domain EBB55_RS15950 PF00665 Integrase core domain EBB55_RS15950 PF13276 HTH-like domain EBB55_RS15980 PF08708 Primase C terminal 1 (PriCT-1) EBB55_RS16000 PF13610 DDE domain EBB55_RS16020 PF02796 Helix-turn-helix domain of resolvase EBB55_RS16020 PF00239 Resolvase, N terminal domain EBB55_RS16035 PF01022 Bacterial regulatory protein, arsR family EBB55_RS16040 PF04892 VanZ like family EBB55_RS16045 PF02557 D-alanyl-D-alanine carboxypeptidase EBB55_RS16050 PF01427 D-ala-D-ala dipeptidase EBB55_RS16055 PF07478 D-ala D-ala ligase C-terminus EBB55_RS16055 PF01820 D-ala D-ala ligase N-terminus EBB55_RS16060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EBB55_RS16060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EBB55_RS16065 PF01610 Transposase EBB55_RS16065 PF13683 Integrase core domain EBB55_RS16070 PF00512 His Kinase A (phospho-acceptor) domain EBB55_RS16070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EBB55_RS16075 PF00486 Transcriptional regulatory protein, C terminal EBB55_RS16075 PF00072 Response regulator receiver domain EBB55_RS16090 PF03432 Relaxase/Mobilisation nuclease domain EBB55_RS16125 PF01721 Class II bacteriocin EBB55_RS16170 PF00398 Ribosomal RNA adenine dimethylase EBB55_RS16175 PF06414 Zeta toxin EBB55_RS16180 PF08998 Bacterial epsilon antitoxin EBB55_RS16195 PF01636 Phosphotransferase enzyme family EBB55_RS16205 PF06308 23S rRNA methylastransferase leader peptide (ErmCL)