locus-tag class description CDW54_RS00010 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS00015 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDW54_RS00020 PF00005 ABC transporter CDW54_RS00025 PF00579 tRNA synthetases class I (W and Y) CDW54_RS00030 PF01588 Putative tRNA binding domain CDW54_RS00030 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CDW54_RS00030 PF03147 Ferredoxin-fold anticodon binding domain CDW54_RS00030 PF03483 B3/4 domain CDW54_RS00030 PF03484 tRNA synthetase B5 domain CDW54_RS00035 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CDW54_RS00035 PF01409 tRNA synthetases class II core domain (F) CDW54_RS00040 PF01638 HxlR-like helix-turn-helix CDW54_RS00045 PF13361 UvrD-like helicase C-terminal domain CDW54_RS00045 PF00580 UvrD/REP helicase N-terminal domain CDW54_RS00045 PF12705 PD-(D/E)XK nuclease superfamily CDW54_RS00050 PF12705 PD-(D/E)XK nuclease superfamily CDW54_RS00055 PF00854 POT family CDW54_RS00075 PF13529 Peptidase_C39 like family CDW54_RS00140 PF01476 LysM domain CDW54_RS00140 PF05257 CHAP domain CDW54_RS00155 PF01883 Iron-sulfur cluster assembly protein CDW54_RS00160 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CDW54_RS00160 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CDW54_RS00165 PF04461 Protein of unknown function (DUF520) CDW54_RS00175 PF00753 Metallo-beta-lactamase superfamily CDW54_RS00185 PF02673 Bacitracin resistance protein BacA CDW54_RS00195 PF04284 Protein of unknown function (DUF441) CDW54_RS00205 PF01649 Ribosomal protein S20 CDW54_RS00210 PF06144 DNA polymerase III, delta subunit CDW54_RS00220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDW54_RS00235 PF10531 SLBB domain CDW54_RS00240 PF05362 Lon protease (S16) C-terminal proteolytic domain CDW54_RS00240 PF13180 PDZ domain CDW54_RS00245 PF01467 Cytidylyltransferase-like CDW54_RS00255 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) CDW54_RS00270 PF02785 Biotin carboxylase C-terminal domain CDW54_RS00270 PF00682 HMGL-like CDW54_RS00270 PF02436 Conserved carboxylase domain CDW54_RS00270 PF00289 Biotin carboxylase, N-terminal domain CDW54_RS00270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDW54_RS00270 PF00364 Biotin-requiring enzyme CDW54_RS00275 PF01098 Cell cycle protein CDW54_RS00280 PF07408 Protein of unknown function (DUF1507) CDW54_RS00285 PF16124 RecQ zinc-binding CDW54_RS00285 PF00570 HRDC domain CDW54_RS00285 PF00271 Helicase conserved C-terminal domain CDW54_RS00285 PF00270 DEAD/DEAH box helicase CDW54_RS00285 PF09382 RQC domain CDW54_RS00290 PF00679 Elongation factor G C-terminus CDW54_RS00290 PF00009 Elongation factor Tu GTP binding domain CDW54_RS00290 PF14492 Elongation Factor G, domain II CDW54_RS00290 PF03144 Elongation factor Tu domain 2 CDW54_RS00295 PF00459 Inositol monophosphatase family CDW54_RS00300 PF05256 Uncharacterised protein family (UPF0223) CDW54_RS00305 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDW54_RS00305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS00310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CDW54_RS00310 PF02817 e3 binding domain CDW54_RS00310 PF00364 Biotin-requiring enzyme CDW54_RS00315 PF02779 Transketolase, pyrimidine binding domain CDW54_RS00315 PF02780 Transketolase, C-terminal domain CDW54_RS00320 PF00676 Dehydrogenase E1 component CDW54_RS00330 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS00330 PF00155 Aminotransferase class I and II CDW54_RS00340 PF00478 IMP dehydrogenase / GMP reductase domain CDW54_RS00345 PF02653 Branched-chain amino acid transport system / permease component CDW54_RS00350 PF00005 ABC transporter CDW54_RS00355 PF13407 Periplasmic binding protein domain CDW54_RS00360 PF13407 Periplasmic binding protein domain CDW54_RS00375 PF00248 Aldo/keto reductase family CDW54_RS00380 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CDW54_RS00380 PF02844 Phosphoribosylglycinamide synthetase, N domain CDW54_RS00380 PF02843 Phosphoribosylglycinamide synthetase, C domain CDW54_RS00385 PF01808 AICARFT/IMPCHase bienzyme CDW54_RS00385 PF02142 MGS-like domain CDW54_RS00390 PF00551 Formyl transferase CDW54_RS00395 PF02769 AIR synthase related protein, C-terminal domain CDW54_RS00395 PF00586 AIR synthase related protein, N-terminal domain CDW54_RS00400 PF00156 Phosphoribosyl transferase domain CDW54_RS00400 PF13537 Glutamine amidotransferase domain CDW54_RS00405 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CDW54_RS00405 PF00586 AIR synthase related protein, N-terminal domain CDW54_RS00405 PF02769 AIR synthase related protein, C-terminal domain CDW54_RS00415 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CDW54_RS00420 PF01259 SAICAR synthetase CDW54_RS00430 PF00206 Lyase CDW54_RS00430 PF10397 Adenylosuccinate lyase C-terminus CDW54_RS00435 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CDW54_RS00435 PF02222 ATP-grasp domain CDW54_RS00440 PF00731 AIR carboxylase CDW54_RS00450 PF00860 Permease family CDW54_RS00455 PF00156 Phosphoribosyl transferase domain CDW54_RS00460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDW54_RS00460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDW54_RS00470 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS00475 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS00480 PF13416 Bacterial extracellular solute-binding protein CDW54_RS00490 PF01476 LysM domain CDW54_RS00490 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CDW54_RS00495 PF02557 D-alanyl-D-alanine carboxypeptidase CDW54_RS00505 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDW54_RS00505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDW54_RS00525 PF15975 Flotillin CDW54_RS00525 PF01145 SPFH domain / Band 7 family CDW54_RS00535 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CDW54_RS00535 PF00989 PAS fold CDW54_RS00535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS00535 PF17203 Single cache domain 3 CDW54_RS00540 PF00072 Response regulator receiver domain CDW54_RS00545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDW54_RS00545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDW54_RS00555 PF01979 Amidohydrolase family CDW54_RS00565 PF00155 Aminotransferase class I and II CDW54_RS00585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDW54_RS00600 PF05257 CHAP domain CDW54_RS00600 PF01476 LysM domain CDW54_RS00605 PF01026 TatD related DNase CDW54_RS00610 PF00005 ABC transporter CDW54_RS00620 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS00625 PF00403 Heavy-metal-associated domain CDW54_RS00625 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS00625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDW54_RS00630 PF00571 CBS domain CDW54_RS00630 PF00005 ABC transporter CDW54_RS00635 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDW54_RS00655 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CDW54_RS00655 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CDW54_RS00665 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS00670 PF00326 Prolyl oligopeptidase family CDW54_RS00680 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CDW54_RS00700 PF01368 DHH family CDW54_RS00700 PF02833 DHHA2 domain CDW54_RS00705 PF04055 Radical SAM superfamily CDW54_RS00710 PF02901 Pyruvate formate lyase-like CDW54_RS00710 PF01228 Glycine radical CDW54_RS00715 PF03989 DNA gyrase C-terminal domain, beta-propeller CDW54_RS00715 PF00521 DNA gyrase/topoisomerase IV, subunit A CDW54_RS00720 PF00204 DNA gyrase B CDW54_RS00720 PF01751 Toprim domain CDW54_RS00720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS00720 PF00986 DNA gyrase B subunit, carboxyl terminus CDW54_RS00725 PF13380 CoA binding domain CDW54_RS00730 PF02660 Glycerol-3-phosphate acyltransferase CDW54_RS00740 PF06018 CodY GAF-like domain CDW54_RS00740 PF08222 CodY helix-turn-helix domain CDW54_RS00745 PF07724 AAA domain (Cdc48 subfamily) CDW54_RS00745 PF00004 ATPase family associated with various cellular activities (AAA) CDW54_RS00745 PF10431 C-terminal, D2-small domain, of ClpB protein CDW54_RS00750 PF00227 Proteasome subunit CDW54_RS00755 PF00589 Phage integrase family CDW54_RS00755 PF02899 Phage integrase, N-terminal SAM-like domain CDW54_RS00760 PF01134 Glucose inhibited division protein A CDW54_RS00765 PF01131 DNA topoisomerase CDW54_RS00765 PF01751 Toprim domain CDW54_RS00765 PF01396 Topoisomerase DNA binding C4 zinc finger CDW54_RS00770 PF18255 DNA processing protein A sterile alpha motif domain CDW54_RS00770 PF02481 DNA recombination-mediator protein A CDW54_RS00780 PF01351 Ribonuclease HII CDW54_RS00785 PF01926 50S ribosome-binding GTPase CDW54_RS00810 PF10502 Signal peptidase, peptidase S26 CDW54_RS00815 PF06855 YozE SAM-like fold CDW54_RS00820 PF01625 Peptide methionine sulfoxide reductase CDW54_RS00825 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) CDW54_RS00830 PF13472 GDSL-like Lipase/Acylhydrolase family CDW54_RS00835 PF02645 Uncharacterised protein, DegV family COG1307 CDW54_RS00840 PF03006 Haemolysin-III related CDW54_RS00845 PF00186 Dihydrofolate reductase CDW54_RS00850 PF00303 Thymidylate synthase CDW54_RS00855 PF00005 ABC transporter CDW54_RS00855 PF16326 ABC transporter C-terminal domain CDW54_RS00855 PF12848 ABC transporter CDW54_RS00860 PF00999 Sodium/hydrogen exchanger family CDW54_RS00875 PF13735 tRNA nucleotidyltransferase domain 2 putative CDW54_RS00875 PF12627 Probable RNA and SrmB- binding site of polymerase A CDW54_RS00875 PF01743 Poly A polymerase head domain CDW54_RS00880 PF03819 MazG nucleotide pyrophosphohydrolase domain CDW54_RS00885 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CDW54_RS00885 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CDW54_RS00890 PF08864 UPF0302 domain CDW54_RS00890 PF08858 IDEAL domain CDW54_RS00910 PF00216 Bacterial DNA-binding protein CDW54_RS00915 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CDW54_RS00915 PF01926 50S ribosome-binding GTPase CDW54_RS00920 PF00575 S1 RNA binding domain CDW54_RS00925 PF02224 Cytidylate kinase CDW54_RS00935 PF00270 DEAD/DEAH box helicase CDW54_RS00935 PF00271 Helicase conserved C-terminal domain CDW54_RS00955 PF01546 Peptidase family M20/M25/M40 CDW54_RS00960 PF03606 C4-dicarboxylate anaerobic carrier CDW54_RS00965 PF12822 ECF transporter, substrate-specific component CDW54_RS00970 PF00849 RNA pseudouridylate synthase CDW54_RS00970 PF01479 S4 domain CDW54_RS00975 PF04079 Segregation and condensation complex subunit ScpB CDW54_RS00980 PF02616 Segregation and condensation protein ScpA CDW54_RS00990 PF02899 Phage integrase, N-terminal SAM-like domain CDW54_RS00990 PF00589 Phage integrase family CDW54_RS00995 PF01475 Ferric uptake regulator family CDW54_RS01000 PF17783 CvfB-like winged helix domain CDW54_RS01000 PF13509 S1 domain CDW54_RS01005 PF18708 MapZ extracellular C-terminal domain 2 CDW54_RS01005 PF18041 MapZ extracellular domain 1 CDW54_RS01010 PF04542 Sigma-70 region 2 CDW54_RS01010 PF04539 Sigma-70 region 3 CDW54_RS01010 PF00140 Sigma-70 factor, region 1.2 CDW54_RS01010 PF03979 Sigma-70 factor, region 1.1 CDW54_RS01010 PF04545 Sigma-70, region 4 CDW54_RS01015 PF08275 DNA primase catalytic core, N-terminal domain CDW54_RS01015 PF10410 DnaB-helicase binding domain of primase CDW54_RS01015 PF01807 CHC2 zinc finger CDW54_RS01035 PF00561 alpha/beta hydrolase fold CDW54_RS01040 PF09924 Uncharacterised conserved protein (DUF2156) CDW54_RS01040 PF03706 Lysylphosphatidylglycerol synthase TM region CDW54_RS01045 PF03143 Elongation factor Tu C-terminal domain CDW54_RS01045 PF03144 Elongation factor Tu domain 2 CDW54_RS01045 PF00009 Elongation factor Tu GTP binding domain CDW54_RS01060 PF00248 Aldo/keto reductase family CDW54_RS01075 PF02803 Thiolase, C-terminal domain CDW54_RS01075 PF00108 Thiolase, N-terminal domain CDW54_RS01080 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal CDW54_RS01080 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal CDW54_RS01090 PF00690 Cation transporter/ATPase, N-terminus CDW54_RS01090 PF00689 Cation transporting ATPase, C-terminus CDW54_RS01095 PF13396 Phospholipase_D-nuclease N-terminal CDW54_RS01095 PF13091 PLD-like domain CDW54_RS01100 PF08543 Phosphomethylpyrimidine kinase CDW54_RS01115 PF03960 ArsC family CDW54_RS01130 PF03551 Transcriptional regulator PadR-like family CDW54_RS01135 PF00582 Universal stress protein family CDW54_RS01140 PF00232 Glycosyl hydrolase family 1 CDW54_RS01145 PF02378 Phosphotransferase system, EIIC CDW54_RS01150 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS01150 PF07702 UTRA domain CDW54_RS01160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDW54_RS01165 PF01738 Dienelactone hydrolase family CDW54_RS01180 PF00596 Class II Aldolase and Adducin N-terminal domain CDW54_RS01185 PF01261 Xylose isomerase-like TIM barrel CDW54_RS01190 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDW54_RS01200 PF03611 PTS system sugar-specific permease component CDW54_RS01205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDW54_RS01215 PF00455 DeoR C terminal sensor domain CDW54_RS01215 PF08220 DeoR-like helix-turn-helix domain CDW54_RS01240 PF02378 Phosphotransferase system, EIIC CDW54_RS01245 PF02378 Phosphotransferase system, EIIC CDW54_RS01245 PF00367 phosphotransferase system, EIIB CDW54_RS01245 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS01250 PF02056 Family 4 glycosyl hydrolase CDW54_RS01250 PF11975 Family 4 glycosyl hydrolase C-terminal domain CDW54_RS01255 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS01255 PF02378 Phosphotransferase system, EIIC CDW54_RS01255 PF00367 phosphotransferase system, EIIB CDW54_RS01260 PF04794 YdjC-like protein CDW54_RS01265 PF03123 CAT RNA binding domain CDW54_RS01265 PF00874 PRD domain CDW54_RS01375 PF18719 ArlS sensor domain CDW54_RS01375 PF00512 His Kinase A (phospho-acceptor) domain CDW54_RS01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS01380 PF00072 Response regulator receiver domain CDW54_RS01380 PF00486 Transcriptional regulatory protein, C terminal CDW54_RS01385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDW54_RS01385 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CDW54_RS01390 PF01783 Ribosomal L32p protein family CDW54_RS01400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDW54_RS01400 PF03466 LysR substrate binding domain CDW54_RS01405 PF00391 PEP-utilising enzyme, mobile domain CDW54_RS01405 PF00224 Pyruvate kinase, barrel domain CDW54_RS01405 PF02887 Pyruvate kinase, alpha/beta domain CDW54_RS01410 PF00365 Phosphofructokinase CDW54_RS01415 PF02811 PHP domain CDW54_RS01415 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDW54_RS01415 PF01336 OB-fold nucleic acid binding domain CDW54_RS01415 PF14579 Helix-hairpin-helix motif CDW54_RS01415 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDW54_RS01425 PF07690 Major Facilitator Superfamily CDW54_RS01430 PF00860 Permease family CDW54_RS01440 PF03717 Penicillin-binding Protein dimerisation domain CDW54_RS01440 PF00905 Penicillin binding protein transpeptidase domain CDW54_RS01445 PF01380 SIS domain CDW54_RS01445 PF01418 Helix-turn-helix domain, rpiR family CDW54_RS01450 PF02824 TGS domain CDW54_RS01450 PF03129 Anticodon binding domain CDW54_RS01450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDW54_RS01450 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDW54_RS01460 PF01361 Tautomerase enzyme CDW54_RS01465 PF00403 Heavy-metal-associated domain CDW54_RS01470 PF13538 UvrD-like helicase C-terminal domain CDW54_RS01480 PF01709 Transcriptional regulator CDW54_RS01485 PF05636 HIGH Nucleotidyl Transferase CDW54_RS01490 PF13649 Methyltransferase domain CDW54_RS01500 PF01966 HD domain CDW54_RS01505 PF01467 Cytidylyltransferase-like CDW54_RS01510 PF01985 CRS1 / YhbY (CRM) domain CDW54_RS01515 PF01926 50S ribosome-binding GTPase CDW54_RS01525 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CDW54_RS01530 PF01039 Carboxyl transferase domain CDW54_RS01535 PF02785 Biotin carboxylase C-terminal domain CDW54_RS01535 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDW54_RS01535 PF00289 Biotin carboxylase, N-terminal domain CDW54_RS01540 PF07977 FabA-like domain CDW54_RS01545 PF00364 Biotin-requiring enzyme CDW54_RS01550 PF00109 Beta-ketoacyl synthase, N-terminal domain CDW54_RS01550 PF02801 Beta-ketoacyl synthase, C-terminal domain CDW54_RS01560 PF00698 Acyl transferase domain CDW54_RS01565 PF00550 Phosphopantetheine attachment site CDW54_RS01570 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CDW54_RS01570 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDW54_RS01575 PF01047 MarR family CDW54_RS01580 PF08459 UvrC Helix-hairpin-helix N-terminal CDW54_RS01580 PF02151 UvrB/uvrC motif CDW54_RS01580 PF01541 GIY-YIG catalytic domain CDW54_RS01585 PF08796 Protein of unknown function (DUF1797) CDW54_RS01590 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CDW54_RS01590 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CDW54_RS01595 PF13439 Glycosyltransferase Family 4 CDW54_RS01595 PF00534 Glycosyl transferases group 1 CDW54_RS01600 PF00534 Glycosyl transferases group 1 CDW54_RS01600 PF13439 Glycosyltransferase Family 4 CDW54_RS01605 PF05524 PEP-utilising enzyme, N-terminal CDW54_RS01605 PF00391 PEP-utilising enzyme, mobile domain CDW54_RS01605 PF02896 PEP-utilising enzyme, TIM barrel domain CDW54_RS01610 PF00381 PTS HPr component phosphorylation site CDW54_RS01615 PF10431 C-terminal, D2-small domain, of ClpB protein CDW54_RS01615 PF17871 AAA lid domain CDW54_RS01615 PF00004 ATPase family associated with various cellular activities (AAA) CDW54_RS01615 PF07724 AAA domain (Cdc48 subfamily) CDW54_RS01635 PF00009 Elongation factor Tu GTP binding domain CDW54_RS01635 PF16658 Class II release factor RF3, C-terminal domain CDW54_RS01635 PF03144 Elongation factor Tu domain 2 CDW54_RS01645 PF00571 CBS domain CDW54_RS01645 PF03471 Transporter associated domain CDW54_RS01645 PF01595 Cyclin M transmembrane N-terminal domain CDW54_RS01650 PF01594 AI-2E family transporter CDW54_RS01655 PF00583 Acetyltransferase (GNAT) family CDW54_RS01670 PF04167 Protein of unknown function (DUF402) CDW54_RS01675 PF00730 HhH-GPD superfamily base excision DNA repair protein CDW54_RS01675 PF14815 NUDIX domain CDW54_RS01680 PF02631 RecX family CDW54_RS01685 PF05958 tRNA (Uracil-5-)-methyltransferase CDW54_RS01685 PF01938 TRAM domain CDW54_RS01690 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CDW54_RS01695 PF00872 Transposase, Mutator family CDW54_RS01700 PF03073 TspO/MBR family CDW54_RS01705 PF03816 Cell envelope-related transcriptional attenuator domain CDW54_RS01710 PF00313 'Cold-shock' DNA-binding domain CDW54_RS01715 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CDW54_RS01715 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CDW54_RS01720 PF04138 GtrA-like protein CDW54_RS01725 PF01545 Cation efflux family CDW54_RS01735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDW54_RS01745 PF02254 TrkA-N domain CDW54_RS01745 PF02080 TrkA-C domain CDW54_RS01750 PF00196 Bacterial regulatory proteins, luxR family CDW54_RS01750 PF00072 Response regulator receiver domain CDW54_RS01755 PF00672 HAMP domain CDW54_RS01755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS01755 PF07730 Histidine kinase CDW54_RS01765 PF03449 Transcription elongation factor, N-terminal CDW54_RS01765 PF01272 Transcription elongation factor, GreA/GreB, C-term CDW54_RS01770 PF02618 YceG-like family CDW54_RS01780 PF01370 NAD dependent epimerase/dehydratase family CDW54_RS01790 PF00535 Glycosyl transferase family 2 CDW54_RS01795 PF04991 LicD family CDW54_RS01805 PF00535 Glycosyl transferase family 2 CDW54_RS01815 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CDW54_RS01820 PF04991 LicD family CDW54_RS01825 PF00535 Glycosyl transferase family 2 CDW54_RS01830 PF02397 Bacterial sugar transferase CDW54_RS01835 PF00535 Glycosyl transferase family 2 CDW54_RS01840 PF00398 Ribosomal RNA adenine dimethylase CDW54_RS01845 PF08239 Bacterial SH3 domain CDW54_RS01845 PF00005 ABC transporter CDW54_RS01850 PF01061 ABC-2 type transporter CDW54_RS01865 PF04321 RmlD substrate binding domain CDW54_RS01870 PF16363 GDP-mannose 4,6 dehydratase CDW54_RS01875 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CDW54_RS01880 PF00483 Nucleotidyl transferase CDW54_RS01885 PF00535 Glycosyl transferase family 2 CDW54_RS01900 PF00953 Glycosyl transferase family 4 CDW54_RS01905 PF03631 Virulence factor BrkB CDW54_RS01910 PF00557 Metallopeptidase family M24 CDW54_RS01915 PF00258 Flavodoxin CDW54_RS01925 PF02073 Thermophilic metalloprotease (M29) CDW54_RS01965 PF02378 Phosphotransferase system, EIIC CDW54_RS01970 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CDW54_RS01975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS01980 PF00874 PRD domain CDW54_RS01980 PF00158 Sigma-54 interaction domain CDW54_RS01980 PF03610 PTS system fructose IIA component CDW54_RS01985 PF00270 DEAD/DEAH box helicase CDW54_RS01985 PF00271 Helicase conserved C-terminal domain CDW54_RS01990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDW54_RS01995 PF03749 Sugar fermentation stimulation protein RE domain CDW54_RS01995 PF17746 SfsA N-terminal OB domain CDW54_RS02010 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CDW54_RS02010 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CDW54_RS02015 PF08264 Anticodon-binding domain of tRNA CDW54_RS02015 PF00133 tRNA synthetases class I (I, L, M and V) CDW54_RS02015 PF06827 Zinc finger found in FPG and IleRS CDW54_RS02020 PF05103 DivIVA protein CDW54_RS02025 PF17774 Putative RNA-binding domain in YlmH CDW54_RS02025 PF01479 S4 domain CDW54_RS02035 PF04472 Cell division protein SepF CDW54_RS02040 PF01168 Alanine racemase, N-terminal domain CDW54_RS02045 PF00091 Tubulin/FtsZ family, GTPase domain CDW54_RS02045 PF12327 FtsZ family, C-terminal domain CDW54_RS02050 PF11983 Membrane-attachment and polymerisation-promoting switch CDW54_RS02050 PF02491 SHS2 domain inserted in FTSA CDW54_RS02055 PF03799 Cell division protein FtsQ CDW54_RS02055 PF08478 POTRA domain, FtsQ-type CDW54_RS02060 PF03033 Glycosyltransferase family 28 N-terminal domain CDW54_RS02060 PF04101 Glycosyltransferase family 28 C-terminal domain CDW54_RS02065 PF02875 Mur ligase family, glutamate ligase domain CDW54_RS02065 PF08245 Mur ligase middle domain CDW54_RS02070 PF00953 Glycosyl transferase family 4 CDW54_RS02070 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CDW54_RS02075 PF03717 Penicillin-binding Protein dimerisation domain CDW54_RS02075 PF03793 PASTA domain CDW54_RS02075 PF00905 Penicillin binding protein transpeptidase domain CDW54_RS02085 PF01795 MraW methylase family CDW54_RS02090 PF02381 MraZ protein, putative antitoxin-like CDW54_RS02110 PF13476 AAA domain CDW54_RS02115 PF01316 Arginine repressor, DNA binding domain CDW54_RS02115 PF02863 Arginine repressor, C-terminal domain CDW54_RS02120 PF01479 S4 domain CDW54_RS02120 PF01728 FtsJ-like methyltransferase CDW54_RS02125 PF00348 Polyprenyl synthetase CDW54_RS02130 PF02609 Exonuclease VII small subunit CDW54_RS02135 PF13742 OB-fold nucleic acid binding domain CDW54_RS02135 PF02601 Exonuclease VII, large subunit CDW54_RS02140 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CDW54_RS02140 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CDW54_RS02145 PF01029 NusB family CDW54_RS02150 PF03780 Asp23 family, cell envelope-related function CDW54_RS02155 PF01321 Creatinase/Prolidase N-terminal domain CDW54_RS02155 PF00557 Metallopeptidase family M24 CDW54_RS02160 PF04226 Transglycosylase associated protein CDW54_RS02170 PF03613 PTS system mannose/fructose/sorbose family IID component CDW54_RS02175 PF03609 PTS system sorbose-specific iic component CDW54_RS02180 PF03830 PTS system sorbose subfamily IIB component CDW54_RS02180 PF03610 PTS system fructose IIA component CDW54_RS02185 PF03830 PTS system sorbose subfamily IIB component CDW54_RS02185 PF03610 PTS system fructose IIA component CDW54_RS02190 PF03610 PTS system fructose IIA component CDW54_RS02190 PF00874 PRD domain CDW54_RS02190 PF00158 Sigma-54 interaction domain CDW54_RS02195 PF01016 Ribosomal L27 protein CDW54_RS02205 PF00829 Ribosomal prokaryotic L21 protein CDW54_RS02215 PF00916 Sulfate permease family CDW54_RS02215 PF01740 STAS domain CDW54_RS02220 PF06993 Protein of unknown function (DUF1304) CDW54_RS02245 PF03099 Biotin/lipoate A/B protein ligase family CDW54_RS02245 PF10437 Bacterial lipoate protein ligase C-terminus CDW54_RS02250 PF12706 Beta-lactamase superfamily domain CDW54_RS02260 PF05343 M42 glutamyl aminopeptidase CDW54_RS02265 PF04914 DltD protein CDW54_RS02270 PF00550 Phosphopantetheine attachment site CDW54_RS02275 PF03062 MBOAT, membrane-bound O-acyltransferase family CDW54_RS02280 PF13193 AMP-binding enzyme C-terminal domain CDW54_RS02280 PF00501 AMP-binding enzyme CDW54_RS02295 PF02687 FtsX-like permease family CDW54_RS02300 PF00005 ABC transporter CDW54_RS02305 PF13597 Anaerobic ribonucleoside-triphosphate reductase CDW54_RS02305 PF03477 ATP cone domain CDW54_RS02315 PF11798 IMS family HHH motif CDW54_RS02315 PF00817 impB/mucB/samB family CDW54_RS02315 PF11799 impB/mucB/samB family C-terminal domain CDW54_RS02320 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CDW54_RS02325 PF06156 Initiation control protein YabA CDW54_RS02330 PF04468 PSP1 C-terminal conserved region CDW54_RS02335 PF09115 DNA polymerase III, delta subunit, C terminal CDW54_RS02340 PF06153 Cyclic-di-AMP receptor CDW54_RS02345 PF02223 Thymidylate kinase CDW54_RS02350 PF13662 Toprim domain CDW54_RS02350 PF02132 RecR protein CDW54_RS02355 PF02575 YbaB/EbfC DNA-binding family CDW54_RS02360 PF12169 DNA polymerase III subunits gamma and tau domain III CDW54_RS02385 PF13545 Crp-like helix-turn-helix domain CDW54_RS02395 PF07690 Major Facilitator Superfamily CDW54_RS02405 PF08220 DeoR-like helix-turn-helix domain CDW54_RS02405 PF00455 DeoR C terminal sensor domain CDW54_RS02410 PF01116 Fructose-bisphosphate aldolase class-II CDW54_RS02415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS02430 PF01197 Ribosomal protein L31 CDW54_RS02435 PF07497 Rho termination factor, RNA-binding domain CDW54_RS02435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDW54_RS02435 PF07498 Rho termination factor, N-terminal domain CDW54_RS02440 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDW54_RS02445 PF02557 D-alanyl-D-alanine carboxypeptidase CDW54_RS02450 PF00512 His Kinase A (phospho-acceptor) domain CDW54_RS02450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS02460 PF01116 Fructose-bisphosphate aldolase class-II CDW54_RS02470 PF00117 Glutamine amidotransferase class-I CDW54_RS02470 PF06418 CTP synthase N-terminus CDW54_RS02480 PF00120 Glutamine synthetase, catalytic domain CDW54_RS02480 PF03951 Glutamine synthetase, beta-Grasp domain CDW54_RS02485 PF13411 MerR HTH family regulatory protein CDW54_RS02490 PF16360 GTP-binding GTPase Middle Region CDW54_RS02490 PF13167 GTP-binding GTPase N-terminal CDW54_RS02490 PF01926 50S ribosome-binding GTPase CDW54_RS02500 PF03009 Glycerophosphoryl diester phosphodiesterase family CDW54_RS02510 PF00574 Clp protease CDW54_RS02515 PF00132 Bacterial transferase hexapeptide (six repeats) CDW54_RS02525 PF00005 ABC transporter CDW54_RS02525 PF00664 ABC transporter transmembrane region CDW54_RS02530 PF00664 ABC transporter transmembrane region CDW54_RS02530 PF00005 ABC transporter CDW54_RS02535 PF07288 Protein of unknown function (DUF1447) CDW54_RS02540 PF17770 Ribonuclease J C-terminal domain CDW54_RS02540 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CDW54_RS02540 PF00753 Metallo-beta-lactamase superfamily CDW54_RS02550 PF00313 'Cold-shock' DNA-binding domain CDW54_RS02555 PF04002 RadC-like JAB domain CDW54_RS02560 PF13419 Haloacid dehalogenase-like hydrolase CDW54_RS02565 PF02875 Mur ligase family, glutamate ligase domain CDW54_RS02565 PF08245 Mur ligase middle domain CDW54_RS02570 PF10458 Valyl tRNA synthetase tRNA binding arm CDW54_RS02570 PF08264 Anticodon-binding domain of tRNA CDW54_RS02570 PF00133 tRNA synthetases class I (I, L, M and V) CDW54_RS02575 PF06971 Putative DNA-binding protein N-terminus CDW54_RS02575 PF02629 CoA binding domain CDW54_RS02580 PF02926 THUMP domain CDW54_RS02580 PF02568 Thiamine biosynthesis protein (ThiI) CDW54_RS02585 PF00266 Aminotransferase class-V CDW54_RS02590 PF06160 Septation ring formation regulator, EzrA CDW54_RS02605 PF01904 Protein of unknown function DUF72 CDW54_RS02610 PF17763 Glutaminase/Asparaginase C-terminal domain CDW54_RS02610 PF00710 Asparaginase, N-terminal CDW54_RS02620 PF03881 Fructosamine kinase CDW54_RS02625 PF03051 Peptidase C1-like family CDW54_RS02650 PF00872 Transposase, Mutator family CDW54_RS02660 PF01721 Class II bacteriocin CDW54_RS02680 PF00872 Transposase, Mutator family CDW54_RS02690 PF02796 Helix-turn-helix domain of resolvase CDW54_RS02690 PF00239 Resolvase, N terminal domain CDW54_RS02720 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS02725 PF00251 Glycosyl hydrolases family 32 N-terminal domain CDW54_RS02725 PF08244 Glycosyl hydrolases family 32 C terminal CDW54_RS02730 PF00367 phosphotransferase system, EIIB CDW54_RS02730 PF02378 Phosphotransferase system, EIIC CDW54_RS02730 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS02735 PF00480 ROK family CDW54_RS02740 PF13276 HTH-like domain CDW54_RS02740 PF01527 Transposase CDW54_RS02740 PF13333 Integrase core domain CDW54_RS02740 PF00665 Integrase core domain CDW54_RS02765 PF12008 Type I restriction and modification enzyme - subunit R C terminal CDW54_RS02765 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CDW54_RS02765 PF18766 SWI2/SNF2 ATPase CDW54_RS02770 PF00696 Amino acid kinase family CDW54_RS02775 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS02780 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CDW54_RS02785 PF02378 Phosphotransferase system, EIIC CDW54_RS02790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS02795 PF00232 Glycosyl hydrolase family 1 CDW54_RS02800 PF00480 ROK family CDW54_RS02810 PF00872 Transposase, Mutator family CDW54_RS02830 PF03372 Endonuclease/Exonuclease/phosphatase family CDW54_RS02835 PF02378 Phosphotransferase system, EIIC CDW54_RS02835 PF00367 phosphotransferase system, EIIB CDW54_RS02835 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS02840 PF03632 Glycosyl hydrolase family 65 central catalytic domain CDW54_RS02840 PF03636 Glycosyl hydrolase family 65, N-terminal domain CDW54_RS02840 PF03633 Glycosyl hydrolase family 65, C-terminal domain CDW54_RS02845 PF13419 Haloacid dehalogenase-like hydrolase CDW54_RS02855 PF13610 DDE domain CDW54_RS02905 PF00575 S1 RNA binding domain CDW54_RS02910 PF00155 Aminotransferase class I and II CDW54_RS02915 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDW54_RS02920 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS02925 PF04608 Phosphatidylglycerophosphatase A CDW54_RS02935 PF13344 Haloacid dehalogenase-like hydrolase CDW54_RS02940 PF06265 Protein of unknown function (DUF1027) CDW54_RS02945 PF02872 5'-nucleotidase, C-terminal domain CDW54_RS02960 PF14437 MafB19-like deaminase CDW54_RS02965 PF13556 PucR C-terminal helix-turn-helix domain CDW54_RS02975 PF17126 RsmF rRNA methyltransferase first C-terminal domain CDW54_RS02975 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CDW54_RS02975 PF01189 16S rRNA methyltransferase RsmB/F CDW54_RS02990 PF04298 Putative neutral zinc metallopeptidase CDW54_RS02995 PF08274 PhnA Zinc-Ribbon CDW54_RS02995 PF03831 PhnA domain CDW54_RS03000 PF01368 DHH family CDW54_RS03000 PF02272 DHHA1 domain CDW54_RS03005 PF07085 DRTGG domain CDW54_RS03005 PF00571 CBS domain CDW54_RS03005 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS03005 PF03061 Thioesterase superfamily CDW54_RS03010 PF12706 Beta-lactamase superfamily domain CDW54_RS03020 PF17770 Ribonuclease J C-terminal domain CDW54_RS03020 PF00753 Metallo-beta-lactamase superfamily CDW54_RS03020 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CDW54_RS03030 PF12704 MacB-like periplasmic core domain CDW54_RS03030 PF02687 FtsX-like permease family CDW54_RS03035 PF00005 ABC transporter CDW54_RS03045 PF01979 Amidohydrolase family CDW54_RS03050 PF03606 C4-dicarboxylate anaerobic carrier CDW54_RS03060 PF13580 SIS domain CDW54_RS03070 PF00483 Nucleotidyl transferase CDW54_RS03075 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDW54_RS03075 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDW54_RS03080 PF13580 SIS domain CDW54_RS03085 PF01380 SIS domain CDW54_RS03090 PF03613 PTS system mannose/fructose/sorbose family IID component CDW54_RS03095 PF03609 PTS system sorbose-specific iic component CDW54_RS03100 PF03830 PTS system sorbose subfamily IIB component CDW54_RS03125 PF00005 ABC transporter CDW54_RS03125 PF00664 ABC transporter transmembrane region CDW54_RS03130 PF00664 ABC transporter transmembrane region CDW54_RS03130 PF00005 ABC transporter CDW54_RS03140 PF02142 MGS-like domain CDW54_RS03145 PF00005 ABC transporter CDW54_RS03145 PF17912 MalK OB fold domain CDW54_RS03145 PF03459 TOBE domain CDW54_RS03155 PF00398 Ribosomal RNA adenine dimethylase CDW54_RS03160 PF01751 Toprim domain CDW54_RS03160 PF13331 Domain of unknown function (DUF4093) CDW54_RS03165 PF01026 TatD related DNase CDW54_RS03170 PF13520 Amino acid permease CDW54_RS03180 PF01588 Putative tRNA binding domain CDW54_RS03180 PF09334 tRNA synthetases class I (M) CDW54_RS03180 PF08264 Anticodon-binding domain of tRNA CDW54_RS03200 PF01385 Probable transposase CDW54_RS03200 PF07282 Putative transposase DNA-binding domain CDW54_RS03200 PF12323 Helix-turn-helix domain CDW54_RS03205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDW54_RS03205 PF00005 ABC transporter CDW54_RS03210 PF00005 ABC transporter CDW54_RS03210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDW54_RS03215 PF12911 N-terminal TM domain of oligopeptide transport permease C CDW54_RS03215 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS03220 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS03230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDW54_RS03240 PF00583 Acetyltransferase (GNAT) family CDW54_RS03255 PF04055 Radical SAM superfamily CDW54_RS03260 PF01580 FtsK/SpoIIIE family CDW54_RS03260 PF09397 Ftsk gamma domain CDW54_RS03260 PF17854 FtsK alpha domain CDW54_RS03265 PF00232 Glycosyl hydrolase family 1 CDW54_RS03270 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDW54_RS03275 PF00005 ABC transporter CDW54_RS03280 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS03290 PF05738 Cna protein B-type domain CDW54_RS03290 PF17802 Prealbumin-like fold domain CDW54_RS03290 PF05737 Collagen binding domain CDW54_RS03300 PF00872 Transposase, Mutator family CDW54_RS03335 PF07859 alpha/beta hydrolase fold CDW54_RS03340 PF00464 Serine hydroxymethyltransferase CDW54_RS03345 PF01300 Telomere recombination CDW54_RS03345 PF03481 Putative GTP-binding controlling metal-binding CDW54_RS03355 PF17827 PrmC N-terminal domain CDW54_RS03355 PF05175 Methyltransferase small domain CDW54_RS03360 PF00472 RF-1 domain CDW54_RS03360 PF03462 PCRF domain CDW54_RS03365 PF00265 Thymidine kinase CDW54_RS03375 PF01209 ubiE/COQ5 methyltransferase family CDW54_RS03380 PF10502 Signal peptidase, peptidase S26 CDW54_RS03395 PF02677 Epoxyqueuosine reductase QueH CDW54_RS03400 PF02386 Cation transport protein CDW54_RS03405 PF08245 Mur ligase middle domain CDW54_RS03405 PF08353 Domain of unknown function (DUF1727) CDW54_RS03410 PF07685 CobB/CobQ-like glutamine amidotransferase domain CDW54_RS03415 PF08125 Mannitol dehydrogenase C-terminal domain CDW54_RS03415 PF01232 Mannitol dehydrogenase Rossmann domain CDW54_RS03420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDW54_RS03425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS03425 PF02378 Phosphotransferase system, EIIC CDW54_RS03430 PF00005 ABC transporter CDW54_RS03440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDW54_RS03445 PF00874 PRD domain CDW54_RS03445 PF05043 Mga helix-turn-helix domain CDW54_RS03445 PF08279 HTH domain CDW54_RS03445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDW54_RS03445 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS03450 PF02378 Phosphotransferase system, EIIC CDW54_RS03450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS03455 PF01238 Phosphomannose isomerase type I CDW54_RS03460 PF00144 Beta-lactamase CDW54_RS03475 PF00664 ABC transporter transmembrane region CDW54_RS03475 PF00005 ABC transporter CDW54_RS03480 PF00664 ABC transporter transmembrane region CDW54_RS03480 PF00005 ABC transporter CDW54_RS03495 PF02525 Flavodoxin-like fold CDW54_RS03500 PF01594 AI-2E family transporter CDW54_RS03510 PF10282 Lactonase, 7-bladed beta-propeller CDW54_RS03520 PF00884 Sulfatase CDW54_RS03530 PF01842 ACT domain CDW54_RS03530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CDW54_RS03530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CDW54_RS03535 PF02610 L-arabinose isomerase CDW54_RS03535 PF11762 L-arabinose isomerase C-terminal domain CDW54_RS03540 PF00596 Class II Aldolase and Adducin N-terminal domain CDW54_RS03550 PF00083 Sugar (and other) transporter CDW54_RS03555 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS03560 PF04616 Glycosyl hydrolases family 43 CDW54_RS03560 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain CDW54_RS03565 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CDW54_RS03575 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS03580 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS03590 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CDW54_RS03600 PF02540 NAD synthase CDW54_RS03605 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CDW54_RS03605 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CDW54_RS03605 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CDW54_RS03620 PF07739 TipAS antibiotic-recognition domain CDW54_RS03620 PF13411 MerR HTH family regulatory protein CDW54_RS03625 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS03625 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CDW54_RS03635 PF00118 TCP-1/cpn60 chaperonin family CDW54_RS03640 PF00166 Chaperonin 10 Kd subunit CDW54_RS03650 PF02378 Phosphotransferase system, EIIC CDW54_RS03655 PF13460 NAD(P)H-binding CDW54_RS03660 PF00753 Metallo-beta-lactamase superfamily CDW54_RS03675 PF13426 PAS domain CDW54_RS03675 PF00512 His Kinase A (phospho-acceptor) domain CDW54_RS03675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS03675 PF00672 HAMP domain CDW54_RS03680 PF00072 Response regulator receiver domain CDW54_RS03680 PF00486 Transcriptional regulatory protein, C terminal CDW54_RS03685 PF02645 Uncharacterised protein, DegV family COG1307 CDW54_RS03705 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CDW54_RS03720 PF00313 'Cold-shock' DNA-binding domain CDW54_RS03740 PF00872 Transposase, Mutator family CDW54_RS03745 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS03750 PF00571 CBS domain CDW54_RS03750 PF00005 ABC transporter CDW54_RS03755 PF07729 FCD domain CDW54_RS03755 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS03770 PF07664 Ferrous iron transport protein B C terminus CDW54_RS03770 PF07670 Nucleoside recognition CDW54_RS03770 PF02421 Ferrous iron transport protein B CDW54_RS03770 PF17910 FeoB cytosolic helical domain CDW54_RS03780 PF00462 Glutaredoxin CDW54_RS03785 PF00317 Ribonucleotide reductase, all-alpha domain CDW54_RS03785 PF02867 Ribonucleotide reductase, barrel domain CDW54_RS03785 PF08343 Ribonucleotide reductase N-terminal CDW54_RS03790 PF00268 Ribonucleotide reductase, small chain CDW54_RS03795 PF01594 AI-2E family transporter CDW54_RS03800 PF02308 MgtC family CDW54_RS03805 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CDW54_RS03810 PF12848 ABC transporter CDW54_RS03810 PF00005 ABC transporter CDW54_RS03815 PF07690 Major Facilitator Superfamily CDW54_RS03820 PF09335 SNARE associated Golgi protein CDW54_RS03825 PF00542 Ribosomal protein L7/L12 C-terminal domain CDW54_RS03825 PF16320 Ribosomal protein L7/L12 dimerisation domain CDW54_RS03830 PF00466 Ribosomal protein L10 CDW54_RS03835 PF00687 Ribosomal protein L1p/L10e family CDW54_RS03840 PF03946 Ribosomal protein L11, N-terminal domain CDW54_RS03840 PF00298 Ribosomal protein L11, RNA binding domain CDW54_RS03845 PF03315 Serine dehydratase beta chain CDW54_RS03845 PF01842 ACT domain CDW54_RS03850 PF03313 Serine dehydratase alpha chain CDW54_RS03855 PF01070 FMN-dependent dehydrogenase CDW54_RS03860 PF00561 alpha/beta hydrolase fold CDW54_RS03865 PF00467 KOW motif CDW54_RS03865 PF02357 Transcription termination factor nusG CDW54_RS03870 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CDW54_RS03875 PF00471 Ribosomal protein L33 CDW54_RS03890 PF00781 Diacylglycerol kinase catalytic domain CDW54_RS03905 PF00005 ABC transporter CDW54_RS03910 PF07730 Histidine kinase CDW54_RS03915 PF00072 Response regulator receiver domain CDW54_RS03915 PF00196 Bacterial regulatory proteins, luxR family CDW54_RS03925 PF14490 Helix-hairpin-helix containing domain CDW54_RS03925 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CDW54_RS03925 PF13538 UvrD-like helicase C-terminal domain CDW54_RS03935 PF00588 SpoU rRNA Methylase family CDW54_RS03940 PF01209 ubiE/COQ5 methyltransferase family CDW54_RS03945 PF03932 CutC family CDW54_RS03950 PF00571 CBS domain CDW54_RS03950 PF03448 MgtE intracellular N domain CDW54_RS03950 PF01769 Divalent cation transporter CDW54_RS03955 PF00849 RNA pseudouridylate synthase CDW54_RS03960 PF01513 ATP-NAD kinase CDW54_RS03965 PF04607 Region found in RelA / SpoT proteins CDW54_RS03970 PF01928 CYTH domain CDW54_RS03980 PF08439 Oligopeptidase F CDW54_RS03980 PF01432 Peptidase family M3 CDW54_RS03990 PF05389 Negative regulator of genetic competence (MecA) CDW54_RS03995 PF03960 ArsC family CDW54_RS04005 PF00271 Helicase conserved C-terminal domain CDW54_RS04005 PF04434 SWIM zinc finger CDW54_RS04005 PF00176 SNF2 family N-terminal domain CDW54_RS04010 PF13476 AAA domain CDW54_RS04015 PF12320 Type 5 capsule protein repressor C-terminal domain CDW54_RS04015 PF00149 Calcineurin-like phosphoesterase CDW54_RS04020 PF01553 Acyltransferase CDW54_RS04025 PF05175 Methyltransferase small domain CDW54_RS04030 PF01541 GIY-YIG catalytic domain CDW54_RS04035 PF01757 Acyltransferase family CDW54_RS04040 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CDW54_RS04040 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CDW54_RS04045 PF01336 OB-fold nucleic acid binding domain CDW54_RS04045 PF02938 GAD domain CDW54_RS04045 PF00152 tRNA synthetases class II (D, K and N) CDW54_RS04050 PF03129 Anticodon binding domain CDW54_RS04050 PF13393 Histidyl-tRNA synthetase CDW54_RS04060 PF00248 Aldo/keto reductase family CDW54_RS04065 PF00067 Cytochrome P450 CDW54_RS04070 PF02580 D-Tyr-tRNA(Tyr) deacylase CDW54_RS04075 PF02824 TGS domain CDW54_RS04075 PF04607 Region found in RelA / SpoT proteins CDW54_RS04075 PF13291 ACT domain CDW54_RS04085 PF04452 RNA methyltransferase CDW54_RS04100 PF02245 Methylpurine-DNA glycosylase (MPG) CDW54_RS04105 PF12002 MgsA AAA+ ATPase C terminal CDW54_RS04105 PF16193 AAA C-terminal domain CDW54_RS04105 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDW54_RS04120 PF00582 Universal stress protein family CDW54_RS04135 PF00005 ABC transporter CDW54_RS04135 PF16326 ABC transporter C-terminal domain CDW54_RS04135 PF12848 ABC transporter CDW54_RS04140 PF00871 Acetokinase family CDW54_RS04145 PF02384 N-6 DNA Methylase CDW54_RS04170 PF07963 Prokaryotic N-terminal methylation motif CDW54_RS04175 PF00482 Type II secretion system (T2SS), protein F CDW54_RS04180 PF00437 Type II/IV secretion system protein CDW54_RS04185 PF13382 Adenine deaminase C-terminal domain CDW54_RS04185 PF01979 Amidohydrolase family CDW54_RS04190 PF02390 Putative methyltransferase CDW54_RS04200 PF05975 Bacterial ABC transporter protein EcsB CDW54_RS04205 PF00005 ABC transporter CDW54_RS04210 PF01230 HIT domain CDW54_RS04220 PF13145 PPIC-type PPIASE domain CDW54_RS04225 PF01336 OB-fold nucleic acid binding domain CDW54_RS04225 PF01966 HD domain CDW54_RS04230 PF13514 AAA domain CDW54_RS04235 PF00149 Calcineurin-like phosphoesterase CDW54_RS04285 PF04616 Glycosyl hydrolases family 43 CDW54_RS04285 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CDW54_RS04300 PF01738 Dienelactone hydrolase family CDW54_RS04305 PF00295 Glycosyl hydrolases family 28 CDW54_RS04310 PF07470 Glycosyl Hydrolase Family 88 CDW54_RS04315 PF13416 Bacterial extracellular solute-binding protein CDW54_RS04325 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS04330 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS04340 PF12833 Helix-turn-helix domain CDW54_RS04340 PF17853 GGDEF-like domain CDW54_RS04345 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS04350 PF01232 Mannitol dehydrogenase Rossmann domain CDW54_RS04350 PF08125 Mannitol dehydrogenase C-terminal domain CDW54_RS04355 PF08666 SAF domain CDW54_RS04355 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CDW54_RS04360 PF02614 Glucuronate isomerase CDW54_RS04365 PF00657 GDSL-like Lipase/Acylhydrolase CDW54_RS04375 PF00664 ABC transporter transmembrane region CDW54_RS04375 PF00005 ABC transporter CDW54_RS04380 PF06133 Control of competence regulator ComK, YlbF/YmcA CDW54_RS04385 PF00905 Penicillin binding protein transpeptidase domain CDW54_RS04385 PF00912 Transglycosylase CDW54_RS04390 PF00849 RNA pseudouridylate synthase CDW54_RS04390 PF01479 S4 domain CDW54_RS04395 PF00480 ROK family CDW54_RS04400 PF09261 Alpha mannosidase middle domain CDW54_RS04400 PF01074 Glycosyl hydrolases family 38 N-terminal domain CDW54_RS04400 PF07748 Glycosyl hydrolases family 38 C-terminal domain CDW54_RS04400 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 CDW54_RS04400 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain CDW54_RS04410 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS04425 PF00072 Response regulator receiver domain CDW54_RS04425 PF12833 Helix-turn-helix domain CDW54_RS04430 PF06580 Histidine kinase CDW54_RS04430 PF02743 Cache domain CDW54_RS04430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS04430 PF00672 HAMP domain CDW54_RS04440 PF12010 Domain of unknown function (DUF3502) CDW54_RS04445 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS04450 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS04460 PF00849 RNA pseudouridylate synthase CDW54_RS04460 PF01479 S4 domain CDW54_RS04465 PF14667 Polysaccharide biosynthesis C-terminal domain CDW54_RS04465 PF01943 Polysaccharide biosynthesis protein CDW54_RS04475 PF02875 Mur ligase family, glutamate ligase domain CDW54_RS04475 PF08245 Mur ligase middle domain CDW54_RS04480 PF02378 Phosphotransferase system, EIIC CDW54_RS04490 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CDW54_RS04495 PF08279 HTH domain CDW54_RS04495 PF05043 Mga helix-turn-helix domain CDW54_RS04495 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDW54_RS04495 PF00874 PRD domain CDW54_RS04500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS04535 PF06445 GyrI-like small molecule binding domain CDW54_RS04535 PF13411 MerR HTH family regulatory protein CDW54_RS04545 PF00005 ABC transporter CDW54_RS04545 PF00664 ABC transporter transmembrane region CDW54_RS04560 PF08264 Anticodon-binding domain of tRNA CDW54_RS04560 PF00133 tRNA synthetases class I (I, L, M and V) CDW54_RS04560 PF13603 Leucyl-tRNA synthetase, Domain 2 CDW54_RS04560 PF09334 tRNA synthetases class I (M) CDW54_RS04565 PF01476 LysM domain CDW54_RS04565 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CDW54_RS04570 PF01569 PAP2 superfamily CDW54_RS04575 PF04055 Radical SAM superfamily CDW54_RS04575 PF16199 Radical_SAM C-terminal domain CDW54_RS04580 PF06962 Putative rRNA methylase CDW54_RS04585 PF00005 ABC transporter CDW54_RS04585 PF00664 ABC transporter transmembrane region CDW54_RS04590 PF00005 ABC transporter CDW54_RS04590 PF00664 ABC transporter transmembrane region CDW54_RS04595 PF00440 Bacterial regulatory proteins, tetR family CDW54_RS04595 PF02909 Tetracyclin repressor-like, C-terminal domain CDW54_RS04605 PF07690 Major Facilitator Superfamily CDW54_RS04610 PF02773 S-adenosylmethionine synthetase, C-terminal domain CDW54_RS04610 PF02772 S-adenosylmethionine synthetase, central domain CDW54_RS04610 PF00438 S-adenosylmethionine synthetase, N-terminal domain CDW54_RS04770 PF01336 OB-fold nucleic acid binding domain CDW54_RS04770 PF00152 tRNA synthetases class II (D, K and N) CDW54_RS04775 PF01207 Dihydrouridine synthase (Dus) CDW54_RS04780 PF01430 Hsp33 protein CDW54_RS04785 PF01434 Peptidase family M41 CDW54_RS04785 PF00004 ATPase family associated with various cellular activities (AAA) CDW54_RS04785 PF17862 AAA+ lid domain CDW54_RS04785 PF06480 FtsH Extracellular CDW54_RS04790 PF00156 Phosphoribosyl transferase domain CDW54_RS04795 PF01171 PP-loop family CDW54_RS04795 PF11734 TilS substrate C-terminal domain CDW54_RS04800 PF00575 S1 RNA binding domain CDW54_RS04810 PF01479 S4 domain CDW54_RS04815 PF14667 Polysaccharide biosynthesis C-terminal domain CDW54_RS04815 PF01943 Polysaccharide biosynthesis protein CDW54_RS04820 PF00270 DEAD/DEAH box helicase CDW54_RS04820 PF17757 UvrB interaction domain CDW54_RS04820 PF00271 Helicase conserved C-terminal domain CDW54_RS04820 PF03461 TRCF domain CDW54_RS04820 PF02559 CarD-like/TRCF domain CDW54_RS04825 PF01195 Peptidyl-tRNA hydrolase CDW54_RS04830 PF00056 lactate/malate dehydrogenase, NAD binding domain CDW54_RS04830 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDW54_RS04840 PF01709 Transcriptional regulator CDW54_RS04855 PF00877 NlpC/P60 family CDW54_RS04865 PF04085 rod shape-determining protein MreC CDW54_RS04875 PF00834 Ribulose-phosphate 3 epimerase family CDW54_RS04880 PF16745 RsgA N-terminal domain CDW54_RS04880 PF03193 RsgA GTPase CDW54_RS04885 PF00069 Protein kinase domain CDW54_RS04885 PF03793 PASTA domain CDW54_RS04895 PF01029 NusB family CDW54_RS04895 PF01189 16S rRNA methyltransferase RsmB/F CDW54_RS04900 PF00551 Formyl transferase CDW54_RS04900 PF02911 Formyl transferase, C-terminal domain CDW54_RS04905 PF01327 Polypeptide deformylase CDW54_RS04910 PF04851 Type III restriction enzyme, res subunit CDW54_RS04910 PF18074 Primosomal protein N C-terminal domain CDW54_RS04910 PF17764 3′ DNA-binding domain (3′BD) CDW54_RS04910 PF00271 Helicase conserved C-terminal domain CDW54_RS04910 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CDW54_RS04915 PF01192 RNA polymerase Rpb6 CDW54_RS04920 PF00625 Guanylate kinase CDW54_RS04940 PF08340 Domain of unknown function (DUF1732) CDW54_RS04940 PF03755 YicC-like family, N-terminal region CDW54_RS04950 PF01734 Patatin-like phospholipase CDW54_RS04960 PF09515 Thiamine transporter protein (Thia_YuaJ) CDW54_RS04965 PF14572 Phosphoribosyl synthetase-associated domain CDW54_RS04965 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDW54_RS04970 PF00132 Bacterial transferase hexapeptide (six repeats) CDW54_RS04970 PF00483 Nucleotidyl transferase CDW54_RS04975 PF09182 Bacterial purine repressor, N-terminal CDW54_RS04975 PF00156 Phosphoribosyl transferase domain CDW54_RS04980 PF00950 ABC 3 transport family CDW54_RS04985 PF00005 ABC transporter CDW54_RS04990 PF01297 Zinc-uptake complex component A periplasmic CDW54_RS04990 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CDW54_RS04995 PF00288 GHMP kinases N terminal domain CDW54_RS04995 PF08544 GHMP kinases C terminal CDW54_RS05000 PF09924 Uncharacterised conserved protein (DUF2156) CDW54_RS05000 PF03706 Lysylphosphatidylglycerol synthase TM region CDW54_RS05005 PF14748 Pyrroline-5-carboxylate reductase dimerisation CDW54_RS05005 PF03807 NADP oxidoreductase coenzyme F420-dependent CDW54_RS05010 PF00013 KH domain CDW54_RS05010 PF12072 Domain of unknown function (DUF3552) CDW54_RS05010 PF01966 HD domain CDW54_RS05015 PF00154 recA bacterial DNA recombination protein CDW54_RS05020 PF00994 Probable molybdopterin binding domain CDW54_RS05020 PF18146 Damage-inducible protein CinA KH domain CDW54_RS05020 PF02464 Competence-damaged protein CDW54_RS05025 PF01066 CDP-alcohol phosphatidyltransferase CDW54_RS05035 PF13464 Domain of unknown function (DUF4115) CDW54_RS05040 PF00675 Insulinase (Peptidase family M16) CDW54_RS05040 PF05193 Peptidase M16 inactive domain CDW54_RS05045 PF05193 Peptidase M16 inactive domain CDW54_RS05050 PF01741 Large-conductance mechanosensitive channel, MscL CDW54_RS05055 PF13673 Acetyltransferase (GNAT) domain CDW54_RS05060 PF06257 Biofilm formation stimulator VEG CDW54_RS05070 PF05991 YacP-like NYN domain CDW54_RS05075 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDW54_RS05075 PF00588 SpoU rRNA Methylase family CDW54_RS05080 PF00636 Ribonuclease III domain CDW54_RS05085 PF09190 DALR domain CDW54_RS05085 PF01406 tRNA synthetases class I (C) catalytic domain CDW54_RS05090 PF00132 Bacterial transferase hexapeptide (six repeats) CDW54_RS05090 PF06426 Serine acetyltransferase, N-terminal CDW54_RS05095 PF00749 tRNA synthetases class I (E and Q), catalytic domain CDW54_RS05105 PF18073 Rubredoxin metal binding domain CDW54_RS05110 PF00692 dUTPase CDW54_RS05115 PF00696 Amino acid kinase family CDW54_RS05120 PF00171 Aldehyde dehydrogenase family CDW54_RS05160 PF00005 ABC transporter CDW54_RS05170 PF00881 Nitroreductase family CDW54_RS05185 PF00107 Zinc-binding dehydrogenase CDW54_RS05185 PF08240 Alcohol dehydrogenase GroES-like domain CDW54_RS05200 PF01207 Dihydrouridine synthase (Dus) CDW54_RS05210 PF01061 ABC-2 type transporter CDW54_RS05215 PF00005 ABC transporter CDW54_RS05225 PF00488 MutS domain V CDW54_RS05225 PF05190 MutS family domain IV CDW54_RS05225 PF05192 MutS domain III CDW54_RS05225 PF05188 MutS domain II CDW54_RS05225 PF01624 MutS domain I CDW54_RS05230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS05230 PF00512 His Kinase A (phospho-acceptor) domain CDW54_RS05235 PF00486 Transcriptional regulatory protein, C terminal CDW54_RS05235 PF00072 Response regulator receiver domain CDW54_RS05245 PF00005 ABC transporter CDW54_RS05255 PF00380 Ribosomal protein S9/S16 CDW54_RS05260 PF00572 Ribosomal protein L13 CDW54_RS05265 PF00210 Ferritin-like domain CDW54_RS05270 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDW54_RS05270 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDW54_RS05275 PF01478 Type IV leader peptidase family CDW54_RS05275 PF06750 Bacterial Peptidase A24 N-terminal domain CDW54_RS05280 PF01625 Peptide methionine sulfoxide reductase CDW54_RS05285 PF13419 Haloacid dehalogenase-like hydrolase CDW54_RS05290 PF02595 Glycerate kinase family CDW54_RS05295 PF03636 Glycosyl hydrolase family 65, N-terminal domain CDW54_RS05295 PF03633 Glycosyl hydrolase family 65, C-terminal domain CDW54_RS05295 PF03632 Glycosyl hydrolase family 65 central catalytic domain CDW54_RS05300 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDW54_RS05300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDW54_RS05305 PF01261 Xylose isomerase-like TIM barrel CDW54_RS05310 PF00107 Zinc-binding dehydrogenase CDW54_RS05315 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS05320 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS05325 PF01547 Bacterial extracellular solute-binding protein CDW54_RS05330 PF00128 Alpha amylase, catalytic domain CDW54_RS05340 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS05340 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CDW54_RS05345 PF04998 RNA polymerase Rpb1, domain 5 CDW54_RS05345 PF04983 RNA polymerase Rpb1, domain 3 CDW54_RS05345 PF00623 RNA polymerase Rpb1, domain 2 CDW54_RS05345 PF05000 RNA polymerase Rpb1, domain 4 CDW54_RS05345 PF04997 RNA polymerase Rpb1, domain 1 CDW54_RS05350 PF04565 RNA polymerase Rpb2, domain 3 CDW54_RS05350 PF10385 RNA polymerase beta subunit external 1 domain CDW54_RS05350 PF04560 RNA polymerase Rpb2, domain 7 CDW54_RS05350 PF00562 RNA polymerase Rpb2, domain 6 CDW54_RS05350 PF04563 RNA polymerase beta subunit CDW54_RS05350 PF04561 RNA polymerase Rpb2, domain 2 CDW54_RS05365 PF02653 Branched-chain amino acid transport system / permease component CDW54_RS05370 PF00005 ABC transporter CDW54_RS05380 PF08279 HTH domain CDW54_RS05380 PF03099 Biotin/lipoate A/B protein ligase family CDW54_RS05380 PF02237 Biotin protein ligase C terminal domain CDW54_RS05395 PF00348 Polyprenyl synthetase CDW54_RS05415 PF04205 FMN-binding domain CDW54_RS05420 PF02424 ApbE family CDW54_RS05435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS05435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDW54_RS05440 PF01136 Peptidase family U32 CDW54_RS05440 PF16325 Peptidase family U32 C-terminal domain CDW54_RS05445 PF01136 Peptidase family U32 CDW54_RS05450 PF10431 C-terminal, D2-small domain, of ClpB protein CDW54_RS05450 PF02861 Clp amino terminal domain, pathogenicity island component CDW54_RS05450 PF17871 AAA lid domain CDW54_RS05450 PF07724 AAA domain (Cdc48 subfamily) CDW54_RS05450 PF00004 ATPase family associated with various cellular activities (AAA) CDW54_RS05455 PF17727 CtsR C-terminal dimerization domain CDW54_RS05455 PF05848 CtsR N-terminal HTH domain CDW54_RS05530 PF00072 Response regulator receiver domain CDW54_RS05530 PF00486 Transcriptional regulatory protein, C terminal CDW54_RS05535 PF13426 PAS domain CDW54_RS05535 PF00512 His Kinase A (phospho-acceptor) domain CDW54_RS05535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS05535 PF00672 HAMP domain CDW54_RS05540 PF02403 Seryl-tRNA synthetase N-terminal domain CDW54_RS05540 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDW54_RS05550 PF00478 IMP dehydrogenase / GMP reductase domain CDW54_RS05550 PF00571 CBS domain CDW54_RS05560 PF01926 50S ribosome-binding GTPase CDW54_RS05560 PF06071 Protein of unknown function (DUF933) CDW54_RS05565 PF06107 Bacterial protein of unknown function (DUF951) CDW54_RS05570 PF02195 ParB-like nuclease domain CDW54_RS05570 PF17762 HTH domain found in ParB protein CDW54_RS05575 PF13614 AAA domain CDW54_RS05580 PF02527 rRNA small subunit methyltransferase G CDW54_RS05625 PF00589 Phage integrase family CDW54_RS05625 PF14659 Phage integrase, N-terminal SAM-like domain CDW54_RS05630 PF01134 Glucose inhibited division protein A CDW54_RS05630 PF13932 GidA associated domain CDW54_RS05635 PF01926 50S ribosome-binding GTPase CDW54_RS05635 PF10396 GTP-binding protein TrmE N-terminus CDW54_RS05635 PF12631 MnmE helical domain CDW54_RS05645 PF14804 Jag N-terminus CDW54_RS05645 PF01424 R3H domain CDW54_RS05650 PF02096 60Kd inner membrane protein CDW54_RS05655 PF00825 Ribonuclease P CDW54_RS05660 PF00468 Ribosomal protein L34 CDW54_RS05670 PF00308 Bacterial dnaA protein CDW54_RS05670 PF08299 Bacterial dnaA protein helix-turn-helix CDW54_RS05675 PF02767 DNA polymerase III beta subunit, central domain CDW54_RS05675 PF00712 DNA polymerase III beta subunit, N-terminal domain CDW54_RS05675 PF02768 DNA polymerase III beta subunit, C-terminal domain CDW54_RS05685 PF02463 RecF/RecN/SMC N terminal domain CDW54_RS05690 PF00986 DNA gyrase B subunit, carboxyl terminus CDW54_RS05690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS05690 PF01751 Toprim domain CDW54_RS05690 PF00204 DNA gyrase B CDW54_RS05695 PF00521 DNA gyrase/topoisomerase IV, subunit A CDW54_RS05695 PF03989 DNA gyrase C-terminal domain, beta-propeller CDW54_RS05700 PF01250 Ribosomal protein S6 CDW54_RS05705 PF00436 Single-strand binding protein family CDW54_RS05710 PF01084 Ribosomal protein S18 CDW54_RS05715 PF02272 DHHA1 domain CDW54_RS05715 PF01368 DHH family CDW54_RS05720 PF03948 Ribosomal protein L9, C-terminal domain CDW54_RS05720 PF01281 Ribosomal protein L9, N-terminal domain CDW54_RS05725 PF00772 DnaB-like helicase N terminal domain CDW54_RS05725 PF03796 DnaB-like helicase C terminal domain CDW54_RS05730 PF00709 Adenylosuccinate synthetase CDW54_RS05740 PF02645 Uncharacterised protein, DegV family COG1307 CDW54_RS05745 PF00005 ABC transporter CDW54_RS05745 PF12848 ABC transporter CDW54_RS05765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDW54_RS05765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDW54_RS05765 PF00205 Thiamine pyrophosphate enzyme, central domain CDW54_RS05770 PF02535 ZIP Zinc transporter CDW54_RS05780 PF06736 Protein of unknown function (DUF1211) CDW54_RS05785 PF04892 VanZ like family CDW54_RS05805 PF02540 NAD synthase CDW54_RS05805 PF00958 GMP synthase C terminal domain CDW54_RS05805 PF00117 Glutamine amidotransferase class-I CDW54_RS05810 PF00485 Phosphoribulokinase / Uridine kinase family CDW54_RS05815 PF05175 Methyltransferase small domain CDW54_RS05820 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS05825 PF00591 Glycosyl transferase family, a/b domain CDW54_RS05825 PF02885 Glycosyl transferase family, helical bundle domain CDW54_RS05825 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CDW54_RS05830 PF01791 DeoC/LacD family aldolase CDW54_RS05835 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CDW54_RS05840 PF02608 ABC transporter substrate-binding protein PnrA-like CDW54_RS05845 PF00005 ABC transporter CDW54_RS05850 PF02653 Branched-chain amino acid transport system / permease component CDW54_RS05855 PF02653 Branched-chain amino acid transport system / permease component CDW54_RS05860 PF01676 Metalloenzyme superfamily CDW54_RS05865 PF01048 Phosphorylase superfamily CDW54_RS05870 PF01048 Phosphorylase superfamily CDW54_RS05880 PF00300 Histidine phosphatase superfamily (branch 1) CDW54_RS05885 PF00239 Resolvase, N terminal domain CDW54_RS05885 PF02796 Helix-turn-helix domain of resolvase CDW54_RS05890 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDW54_RS05895 PF00164 Ribosomal protein S12/S23 CDW54_RS05900 PF00177 Ribosomal protein S7p/S5e CDW54_RS05905 PF03144 Elongation factor Tu domain 2 CDW54_RS05905 PF00009 Elongation factor Tu GTP binding domain CDW54_RS05905 PF03764 Elongation factor G, domain IV CDW54_RS05905 PF14492 Elongation Factor G, domain II CDW54_RS05905 PF00679 Elongation factor G C-terminus CDW54_RS05910 PF03143 Elongation factor Tu C-terminal domain CDW54_RS05910 PF03144 Elongation factor Tu domain 2 CDW54_RS05910 PF00009 Elongation factor Tu GTP binding domain CDW54_RS05915 PF00338 Ribosomal protein S10p/S20e CDW54_RS05920 PF00297 Ribosomal protein L3 CDW54_RS05925 PF00573 Ribosomal protein L4/L1 family CDW54_RS05930 PF00276 Ribosomal protein L23 CDW54_RS05935 PF00181 Ribosomal Proteins L2, RNA binding domain CDW54_RS05935 PF03947 Ribosomal Proteins L2, C-terminal domain CDW54_RS05940 PF00203 Ribosomal protein S19 CDW54_RS05945 PF00237 Ribosomal protein L22p/L17e CDW54_RS05950 PF00189 Ribosomal protein S3, C-terminal domain CDW54_RS05950 PF07650 KH domain CDW54_RS05955 PF00252 Ribosomal protein L16p/L10e CDW54_RS05960 PF00831 Ribosomal L29 protein CDW54_RS05965 PF00366 Ribosomal protein S17 CDW54_RS05970 PF00238 Ribosomal protein L14p/L23e CDW54_RS05975 PF00467 KOW motif CDW54_RS05975 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CDW54_RS05980 PF00673 ribosomal L5P family C-terminus CDW54_RS05980 PF00281 Ribosomal protein L5 CDW54_RS05985 PF00253 Ribosomal protein S14p/S29e CDW54_RS05990 PF00410 Ribosomal protein S8 CDW54_RS05995 PF00347 Ribosomal protein L6 CDW54_RS06000 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CDW54_RS06005 PF00333 Ribosomal protein S5, N-terminal domain CDW54_RS06005 PF03719 Ribosomal protein S5, C-terminal domain CDW54_RS06010 PF00327 Ribosomal protein L30p/L7e CDW54_RS06015 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CDW54_RS06020 PF00344 SecY translocase CDW54_RS06025 PF05191 Adenylate kinase, active site lid CDW54_RS06030 PF01176 Translation initiation factor 1A / IF-1 CDW54_RS06035 PF00444 Ribosomal protein L36 CDW54_RS06040 PF00416 Ribosomal protein S13/S18 CDW54_RS06045 PF00411 Ribosomal protein S11 CDW54_RS06050 PF01000 RNA polymerase Rpb3/RpoA insert domain CDW54_RS06050 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CDW54_RS06050 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CDW54_RS06055 PF01196 Ribosomal protein L17 CDW54_RS06060 PF00005 ABC transporter CDW54_RS06065 PF00005 ABC transporter CDW54_RS06070 PF02361 Cobalt transport protein CDW54_RS06075 PF01416 tRNA pseudouridine synthase CDW54_RS06090 PF12706 Beta-lactamase superfamily domain CDW54_RS06095 PF00872 Transposase, Mutator family CDW54_RS06100 PF01037 Lrp/AsnC ligand binding domain CDW54_RS06120 PF13401 AAA domain CDW54_RS06130 PF00830 Ribosomal L28 family CDW54_RS06140 PF03780 Asp23 family, cell envelope-related function CDW54_RS06145 PF02734 DAK2 domain CDW54_RS06145 PF13684 Dihydroxyacetone kinase family CDW54_RS06150 PF00270 DEAD/DEAH box helicase CDW54_RS06150 PF17191 RecG wedge domain CDW54_RS06150 PF00271 Helicase conserved C-terminal domain CDW54_RS06155 PF02504 Fatty acid synthesis protein CDW54_RS06160 PF00550 Phosphopantetheine attachment site CDW54_RS06165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDW54_RS06165 PF00005 ABC transporter CDW54_RS06170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CDW54_RS06170 PF00005 ABC transporter CDW54_RS06175 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS06180 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS06185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CDW54_RS06195 PF00035 Double-stranded RNA binding motif CDW54_RS06195 PF14622 Ribonuclease-III-like CDW54_RS06200 PF06470 SMC proteins Flexible Hinge Domain CDW54_RS06200 PF02463 RecF/RecN/SMC N terminal domain CDW54_RS06210 PF00448 SRP54-type protein, GTPase domain CDW54_RS06210 PF02881 SRP54-type protein, helical bundle domain CDW54_RS06215 PF02655 ATP-grasp domain CDW54_RS06215 PF18419 ATP-grasp-like domain CDW54_RS06215 PF04262 Glutamate-cysteine ligase CDW54_RS06225 PF01032 FecCD transport family CDW54_RS06230 PF01032 FecCD transport family CDW54_RS06235 PF00005 ABC transporter CDW54_RS06240 PF01497 Periplasmic binding protein CDW54_RS06280 PF00872 Transposase, Mutator family CDW54_RS06290 PF00230 Major intrinsic protein CDW54_RS06295 PF03788 LrgA family CDW54_RS06300 PF04172 LrgB-like family CDW54_RS06325 PF02632 BioY family CDW54_RS06330 PF00163 Ribosomal protein S4/S9 N-terminal domain CDW54_RS06330 PF01479 S4 domain CDW54_RS06355 PF13277 YmdB-like protein CDW54_RS06365 PF00488 MutS domain V CDW54_RS06365 PF05190 MutS family domain IV CDW54_RS06365 PF05192 MutS domain III CDW54_RS06365 PF05188 MutS domain II CDW54_RS06365 PF01624 MutS domain I CDW54_RS06370 PF01119 DNA mismatch repair protein, C-terminal domain CDW54_RS06370 PF08676 MutL C terminal dimerisation domain CDW54_RS06375 PF02545 Maf-like protein CDW54_RS06380 PF02378 Phosphotransferase system, EIIC CDW54_RS06380 PF00367 phosphotransferase system, EIIB CDW54_RS06385 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS06385 PF07702 UTRA domain CDW54_RS06390 PF01641 SelR domain CDW54_RS06395 PF07499 RuvA, C-terminal domain CDW54_RS06395 PF01330 RuvA N terminal domain CDW54_RS06400 PF05496 Holliday junction DNA helicase RuvB P-loop domain CDW54_RS06400 PF17864 RuvB AAA lid domain CDW54_RS06400 PF05491 RuvB C-terminal winged helix domain CDW54_RS06410 PF01451 Low molecular weight phosphotyrosine protein phosphatase CDW54_RS06420 PF05525 Branched-chain amino acid transport protein CDW54_RS06425 PF06736 Protein of unknown function (DUF1211) CDW54_RS06430 PF00324 Amino acid permease CDW54_RS06435 PF00005 ABC transporter CDW54_RS06440 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS06455 PF02146 Sir2 family CDW54_RS06460 PF14602 Hexapeptide repeat of succinyl-transferase CDW54_RS06460 PF12464 Maltose acetyltransferase CDW54_RS06465 PF08279 HTH domain CDW54_RS06465 PF02829 3H domain CDW54_RS06475 PF01327 Polypeptide deformylase CDW54_RS06480 PF00312 Ribosomal protein S15 CDW54_RS06485 PF00575 S1 RNA binding domain CDW54_RS06485 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CDW54_RS06485 PF03725 3' exoribonuclease family, domain 2 CDW54_RS06485 PF00013 KH domain CDW54_RS06485 PF01138 3' exoribonuclease family, domain 1 CDW54_RS06495 PF02705 K+ potassium transporter CDW54_RS06500 PF01595 Cyclin M transmembrane N-terminal domain CDW54_RS06500 PF00571 CBS domain CDW54_RS06500 PF03471 Transporter associated domain CDW54_RS06505 PF01554 MatE CDW54_RS06515 PF01386 Ribosomal L25p family CDW54_RS06515 PF14693 Ribosomal protein TL5, C-terminal domain CDW54_RS06520 PF00849 RNA pseudouridylate synthase CDW54_RS06520 PF01479 S4 domain CDW54_RS06525 PF13419 Haloacid dehalogenase-like hydrolase CDW54_RS06530 PF00485 Phosphoribulokinase / Uridine kinase family CDW54_RS06555 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CDW54_RS06560 PF03109 ABC1 family CDW54_RS06565 PF01820 D-ala D-ala ligase N-terminus CDW54_RS06565 PF07478 D-ala D-ala ligase C-terminus CDW54_RS06570 PF08245 Mur ligase middle domain CDW54_RS06570 PF02875 Mur ligase family, glutamate ligase domain CDW54_RS06570 PF01225 Mur ligase family, catalytic domain CDW54_RS06575 PF00270 DEAD/DEAH box helicase CDW54_RS06575 PF00271 Helicase conserved C-terminal domain CDW54_RS06580 PF01648 4'-phosphopantetheinyl transferase superfamily CDW54_RS06585 PF00842 Alanine racemase, C-terminal domain CDW54_RS06585 PF01168 Alanine racemase, N-terminal domain CDW54_RS06590 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CDW54_RS06600 PF00253 Ribosomal protein S14p/S29e CDW54_RS06605 PF00109 Beta-ketoacyl synthase, N-terminal domain CDW54_RS06605 PF02801 Beta-ketoacyl synthase, C-terminal domain CDW54_RS06605 PF08240 Alcohol dehydrogenase GroES-like domain CDW54_RS06605 PF00698 Acyl transferase domain CDW54_RS06605 PF14765 Polyketide synthase dehydratase CDW54_RS06605 PF00550 Phosphopantetheine attachment site CDW54_RS06605 PF08659 KR domain CDW54_RS06605 PF16197 Ketoacyl-synthetase C-terminal extension CDW54_RS06610 PF01061 ABC-2 type transporter CDW54_RS06615 PF13520 Amino acid permease CDW54_RS06645 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS06650 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CDW54_RS06655 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS06660 PF00571 CBS domain CDW54_RS06660 PF00005 ABC transporter CDW54_RS06665 PF02547 Queuosine biosynthesis protein CDW54_RS06670 PF00689 Cation transporting ATPase, C-terminus CDW54_RS06670 PF00690 Cation transporter/ATPase, N-terminus CDW54_RS06680 PF01702 Queuine tRNA-ribosyltransferase CDW54_RS06685 PF02699 Preprotein translocase subunit CDW54_RS06695 PF00171 Aldehyde dehydrogenase family CDW54_RS06695 PF00465 Iron-containing alcohol dehydrogenase CDW54_RS06700 PF07470 Glycosyl Hydrolase Family 88 CDW54_RS06705 PF03480 Bacterial extracellular solute-binding protein, family 7 CDW54_RS06715 PF04962 KduI/IolB family CDW54_RS06725 PF01070 FMN-dependent dehydrogenase CDW54_RS06730 PF00288 GHMP kinases N terminal domain CDW54_RS06730 PF08544 GHMP kinases C terminal CDW54_RS06740 PF00288 GHMP kinases N terminal domain CDW54_RS06740 PF10509 Galactokinase galactose-binding signature CDW54_RS06740 PF08544 GHMP kinases C terminal CDW54_RS06745 PF01712 Deoxynucleoside kinase CDW54_RS06760 PF00707 Translation initiation factor IF-3, C-terminal domain CDW54_RS06760 PF05198 Translation initiation factor IF-3, N-terminal domain CDW54_RS06765 PF01632 Ribosomal protein L35 CDW54_RS06770 PF00453 Ribosomal protein L20 CDW54_RS06780 PF05378 Hydantoinase/oxoprolinase N-terminal region CDW54_RS06780 PF01968 Hydantoinase/oxoprolinase CDW54_RS06795 PF03061 Thioesterase superfamily CDW54_RS06800 PF01256 Carbohydrate kinase CDW54_RS06805 PF01546 Peptidase family M20/M25/M40 CDW54_RS06810 PF00535 Glycosyl transferase family 2 CDW54_RS06820 PF05343 M42 glutamyl aminopeptidase CDW54_RS06825 PF00085 Thioredoxin CDW54_RS06830 PF00582 Universal stress protein family CDW54_RS06835 PF14794 Domain of unknown function (DUF4479) CDW54_RS06835 PF01588 Putative tRNA binding domain CDW54_RS06840 PF13180 PDZ domain CDW54_RS06845 PF02590 Predicted SPOUT methyltransferase CDW54_RS06875 PF13673 Acetyltransferase (GNAT) domain CDW54_RS06885 PF00872 Transposase, Mutator family CDW54_RS06900 PF13520 Amino acid permease CDW54_RS06905 PF00282 Pyridoxal-dependent decarboxylase conserved domain CDW54_RS06920 PF02558 Ketopantoate reductase PanE/ApbA CDW54_RS06920 PF08546 Ketopantoate reductase PanE/ApbA C terminal CDW54_RS06935 PF01625 Peptide methionine sulfoxide reductase CDW54_RS06965 PF00872 Transposase, Mutator family CDW54_RS06970 PF04226 Transglycosylase associated protein CDW54_RS06975 PF02566 OsmC-like protein CDW54_RS07010 PF00403 Heavy-metal-associated domain CDW54_RS07030 PF00884 Sulfatase CDW54_RS07035 PF00375 Sodium:dicarboxylate symporter family CDW54_RS07045 PF01416 tRNA pseudouridine synthase CDW54_RS07065 PF01625 Peptide methionine sulfoxide reductase CDW54_RS07070 PF00248 Aldo/keto reductase family CDW54_RS07075 PF07729 FCD domain CDW54_RS07075 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS07080 PF02378 Phosphotransferase system, EIIC CDW54_RS07085 PF00232 Glycosyl hydrolase family 1 CDW54_RS07090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS07095 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CDW54_RS07100 PF02378 Phosphotransferase system, EIIC CDW54_RS07115 PF00107 Zinc-binding dehydrogenase CDW54_RS07115 PF08240 Alcohol dehydrogenase GroES-like domain CDW54_RS07115 PF13823 Alcohol dehydrogenase GroES-associated CDW54_RS07135 PF06100 MCRA family CDW54_RS07165 PF00282 Pyridoxal-dependent decarboxylase conserved domain CDW54_RS07175 PF00324 Amino acid permease CDW54_RS07180 PF00689 Cation transporting ATPase, C-terminus CDW54_RS07180 PF00690 Cation transporter/ATPase, N-terminus CDW54_RS07205 PF03466 LysR substrate binding domain CDW54_RS07205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDW54_RS07210 PF00698 Acyl transferase domain CDW54_RS07215 PF16957 Malonate decarboxylase, alpha subunit, transporter CDW54_RS07220 PF06857 Malonate decarboxylase delta subunit (MdcD) CDW54_RS07225 PF01039 Carboxyl transferase domain CDW54_RS07230 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG CDW54_RS07240 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CDW54_RS07255 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDW54_RS07265 PF03611 PTS system sugar-specific permease component CDW54_RS07275 PF01116 Fructose-bisphosphate aldolase class-II CDW54_RS07290 PF00293 NUDIX domain CDW54_RS07295 PF01047 MarR family CDW54_RS07300 PF13673 Acetyltransferase (GNAT) domain CDW54_RS07320 PF00860 Permease family CDW54_RS07325 PF16657 Maltogenic Amylase, C-terminal domain CDW54_RS07325 PF00128 Alpha amylase, catalytic domain CDW54_RS07330 PF00232 Glycosyl hydrolase family 1 CDW54_RS07340 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS07340 PF02378 Phosphotransferase system, EIIC CDW54_RS07340 PF00367 phosphotransferase system, EIIB CDW54_RS07345 PF00232 Glycosyl hydrolase family 1 CDW54_RS07365 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CDW54_RS07375 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS07375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDW54_RS07385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CDW54_RS07385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CDW54_RS07390 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CDW54_RS07390 PF01266 FAD dependent oxidoreductase CDW54_RS07395 PF00230 Major intrinsic protein CDW54_RS07400 PF00488 MutS domain V CDW54_RS07400 PF01713 Smr domain CDW54_RS07405 PF01066 CDP-alcohol phosphatidyltransferase CDW54_RS07420 PF02583 Metal-sensitive transcriptional repressor CDW54_RS07425 PF00581 Rhodanese-like domain CDW54_RS07430 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS07430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDW54_RS07435 PF13538 UvrD-like helicase C-terminal domain CDW54_RS07445 PF00872 Transposase, Mutator family CDW54_RS07455 PF00535 Glycosyl transferase family 2 CDW54_RS07465 PF01906 Putative heavy-metal-binding CDW54_RS07470 PF03610 PTS system fructose IIA component CDW54_RS07475 PF02733 Dak1 domain CDW54_RS07480 PF02734 DAK2 domain CDW54_RS07490 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) CDW54_RS07495 PF00027 Cyclic nucleotide-binding domain CDW54_RS07495 PF13545 Crp-like helix-turn-helix domain CDW54_RS07505 PF00005 ABC transporter CDW54_RS07505 PF13732 Domain of unknown function (DUF4162) CDW54_RS07510 PF00440 Bacterial regulatory proteins, tetR family CDW54_RS07510 PF16859 Tetracyclin repressor-like, C-terminal domain CDW54_RS07520 PF00579 tRNA synthetases class I (W and Y) CDW54_RS07520 PF01479 S4 domain CDW54_RS07525 PF00282 Pyridoxal-dependent decarboxylase conserved domain CDW54_RS07530 PF13520 Amino acid permease CDW54_RS07535 PF03553 Na+/H+ antiporter family CDW54_RS07540 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CDW54_RS07540 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS07550 PF13419 Haloacid dehalogenase-like hydrolase CDW54_RS07555 PF03636 Glycosyl hydrolase family 65, N-terminal domain CDW54_RS07555 PF03632 Glycosyl hydrolase family 65 central catalytic domain CDW54_RS07555 PF03633 Glycosyl hydrolase family 65, C-terminal domain CDW54_RS07560 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS07560 PF00367 phosphotransferase system, EIIB CDW54_RS07560 PF02378 Phosphotransferase system, EIIC CDW54_RS07565 PF03372 Endonuclease/Exonuclease/phosphatase family CDW54_RS07590 PF05870 Phenolic acid decarboxylase (PAD) CDW54_RS07595 PF03551 Transcriptional regulator PadR-like family CDW54_RS07595 PF10400 Virulence activator alpha C-term CDW54_RS07605 PF07690 Major Facilitator Superfamily CDW54_RS07635 PF02441 Flavoprotein CDW54_RS07640 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CDW54_RS07650 PF00005 ABC transporter CDW54_RS07650 PF02687 FtsX-like permease family CDW54_RS07650 PF12704 MacB-like periplasmic core domain CDW54_RS07650 PF00005 ABC transporter CDW54_RS07650 PF02687 FtsX-like permease family CDW54_RS07650 PF12704 MacB-like periplasmic core domain CDW54_RS07655 PF00486 Transcriptional regulatory protein, C terminal CDW54_RS07655 PF00072 Response regulator receiver domain CDW54_RS07660 PF00072 Response regulator receiver domain CDW54_RS07660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS07660 PF00512 His Kinase A (phospho-acceptor) domain CDW54_RS07660 PF09308 LuxQ, periplasmic CDW54_RS07665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDW54_RS07665 PF03466 LysR substrate binding domain CDW54_RS07670 PF04474 Protein of unknown function (DUF554) CDW54_RS07705 PF00005 ABC transporter CDW54_RS07715 PF01263 Aldose 1-epimerase CDW54_RS07720 PF05257 CHAP domain CDW54_RS07720 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CDW54_RS07730 PF00872 Transposase, Mutator family CDW54_RS07735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS07735 PF00367 phosphotransferase system, EIIB CDW54_RS07735 PF02378 Phosphotransferase system, EIIC CDW54_RS07740 PF05025 RbsD / FucU transport protein family CDW54_RS07745 PF00294 pfkB family carbohydrate kinase CDW54_RS07745 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CDW54_RS07750 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS07755 PF00857 Isochorismatase family CDW54_RS07760 PF00005 ABC transporter CDW54_RS07770 PF16657 Maltogenic Amylase, C-terminal domain CDW54_RS07770 PF00128 Alpha amylase, catalytic domain CDW54_RS07780 PF01594 AI-2E family transporter CDW54_RS07785 PF01297 Zinc-uptake complex component A periplasmic CDW54_RS07785 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CDW54_RS07790 PF00072 Response regulator receiver domain CDW54_RS07790 PF04397 LytTr DNA-binding domain CDW54_RS07800 PF04647 Accessory gene regulator B CDW54_RS07805 PF00872 Transposase, Mutator family CDW54_RS07815 PF01712 Deoxynucleoside kinase CDW54_RS07830 PF00580 UvrD/REP helicase N-terminal domain CDW54_RS07830 PF13361 UvrD-like helicase C-terminal domain CDW54_RS07835 PF03960 ArsC family CDW54_RS07840 PF03960 ArsC family CDW54_RS07865 PF00255 Glutathione peroxidase CDW54_RS07870 PF02664 S-Ribosylhomocysteinase (LuxS) CDW54_RS07875 PF01053 Cys/Met metabolism PLP-dependent enzyme CDW54_RS07880 PF00291 Pyridoxal-phosphate dependent enzyme CDW54_RS07895 PF08207 Elongation factor P (EF-P) KOW-like domain CDW54_RS07895 PF09285 Elongation factor P, C-terminal CDW54_RS07895 PF01132 Elongation factor P (EF-P) OB domain CDW54_RS07900 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CDW54_RS07900 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CDW54_RS07905 PF01678 Diaminopimelate epimerase CDW54_RS07910 PF00701 Dihydrodipicolinate synthetase family CDW54_RS07915 PF05173 Dihydrodipicolinate reductase, C-terminus CDW54_RS07915 PF01113 Dihydrodipicolinate reductase, N-terminus CDW54_RS07920 PF14602 Hexapeptide repeat of succinyl-transferase CDW54_RS07920 PF00132 Bacterial transferase hexapeptide (six repeats) CDW54_RS07920 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CDW54_RS07925 PF02774 Semialdehyde dehydrogenase, dimerisation domain CDW54_RS07925 PF01118 Semialdehyde dehydrogenase, NAD binding domain CDW54_RS07930 PF13840 ACT domain CDW54_RS07930 PF00696 Amino acid kinase family CDW54_RS07935 PF01546 Peptidase family M20/M25/M40 CDW54_RS07935 PF07687 Peptidase dimerisation domain CDW54_RS07940 PF00155 Aminotransferase class I and II CDW54_RS07945 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDW54_RS07945 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS07955 PF04239 Protein of unknown function (DUF421) CDW54_RS07965 PF00817 impB/mucB/samB family CDW54_RS07965 PF11799 impB/mucB/samB family C-terminal domain CDW54_RS07965 PF11798 IMS family HHH motif CDW54_RS07970 PF00288 GHMP kinases N terminal domain CDW54_RS07970 PF10509 Galactokinase galactose-binding signature CDW54_RS07970 PF08544 GHMP kinases C terminal CDW54_RS07975 PF01263 Aldose 1-epimerase CDW54_RS07980 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS07985 PF12833 Helix-turn-helix domain CDW54_RS07985 PF02311 AraC-like ligand binding domain CDW54_RS07990 PF02525 Flavodoxin-like fold CDW54_RS08000 PF00324 Amino acid permease CDW54_RS08005 PF00005 ABC transporter CDW54_RS08010 PF00950 ABC 3 transport family CDW54_RS08015 PF01297 Zinc-uptake complex component A periplasmic CDW54_RS08025 PF08331 Domain of unknown function (DUF1730) CDW54_RS08030 PF01476 LysM domain CDW54_RS08030 PF04972 BON domain CDW54_RS08040 PF01266 FAD dependent oxidoreductase CDW54_RS08045 PF07690 Major Facilitator Superfamily CDW54_RS08055 PF01316 Arginine repressor, DNA binding domain CDW54_RS08055 PF02863 Arginine repressor, C-terminal domain CDW54_RS08060 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDW54_RS08060 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDW54_RS08060 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDW54_RS08060 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDW54_RS08070 PF02566 OsmC-like protein CDW54_RS08075 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDW54_RS08075 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS08080 PF00857 Isochorismatase family CDW54_RS08085 PF16925 Tetracyclin repressor-like, C-terminal domain CDW54_RS08085 PF00440 Bacterial regulatory proteins, tetR family CDW54_RS08090 PF02586 SOS response associated peptidase (SRAP) CDW54_RS08140 PF00486 Transcriptional regulatory protein, C terminal CDW54_RS08140 PF00072 Response regulator receiver domain CDW54_RS08145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS08150 PF06800 Sugar transport protein CDW54_RS08155 PF13520 Amino acid permease CDW54_RS08160 PF05816 Toxic anion resistance protein (TelA) CDW54_RS08170 PF00293 NUDIX domain CDW54_RS08180 PF01048 Phosphorylase superfamily CDW54_RS08185 PF00857 Isochorismatase family CDW54_RS08190 PF13229 Right handed beta helix region CDW54_RS08200 PF01431 Peptidase family M13 CDW54_RS08200 PF05649 Peptidase family M13 CDW54_RS08210 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CDW54_RS08210 PF14572 Phosphoribosyl synthetase-associated domain CDW54_RS08215 PF00266 Aminotransferase class-V CDW54_RS08225 PF07690 Major Facilitator Superfamily CDW54_RS08240 PF13520 Amino acid permease CDW54_RS08245 PF00155 Aminotransferase class I and II CDW54_RS08250 PF07690 Major Facilitator Superfamily CDW54_RS08265 PF01751 Toprim domain CDW54_RS08265 PF01131 DNA topoisomerase CDW54_RS08270 PF00535 Glycosyl transferase family 2 CDW54_RS08275 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CDW54_RS08275 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CDW54_RS08280 PF03601 Conserved hypothetical protein 698 CDW54_RS08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDW54_RS08295 PF03466 LysR substrate binding domain CDW54_RS08305 PF01098 Cell cycle protein CDW54_RS08310 PF03960 ArsC family CDW54_RS08315 PF01597 Glycine cleavage H-protein CDW54_RS08320 PF09383 NIL domain CDW54_RS08320 PF00005 ABC transporter CDW54_RS08325 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS08330 PF03180 NLPA lipoprotein CDW54_RS08335 PF00005 ABC transporter CDW54_RS08340 PF01458 Uncharacterized protein family (UPF0051) CDW54_RS08345 PF00266 Aminotransferase class-V CDW54_RS08350 PF01592 NifU-like N terminal domain CDW54_RS08355 PF01458 Uncharacterized protein family (UPF0051) CDW54_RS08435 PF04860 Phage portal protein CDW54_RS08575 PF00232 Glycosyl hydrolase family 1 CDW54_RS08585 PF01263 Aldose 1-epimerase CDW54_RS08605 PF10431 C-terminal, D2-small domain, of ClpB protein CDW54_RS08605 PF00004 ATPase family associated with various cellular activities (AAA) CDW54_RS08605 PF07724 AAA domain (Cdc48 subfamily) CDW54_RS08605 PF17871 AAA lid domain CDW54_RS08625 PF08708 Primase C terminal 1 (PriCT-1) CDW54_RS08635 PF01131 DNA topoisomerase CDW54_RS08635 PF01751 Toprim domain CDW54_RS08650 PF07883 Cupin domain CDW54_RS08655 PF00005 ABC transporter CDW54_RS08660 PF03649 Uncharacterised protein family (UPF0014) CDW54_RS08665 PF02796 Helix-turn-helix domain of resolvase CDW54_RS08665 PF00239 Resolvase, N terminal domain CDW54_RS08680 PF13333 Integrase core domain CDW54_RS08680 PF00665 Integrase core domain CDW54_RS08680 PF13276 HTH-like domain CDW54_RS08705 PF13145 PPIC-type PPIASE domain CDW54_RS08715 PF00781 Diacylglycerol kinase catalytic domain CDW54_RS08760 PF04203 Sortase domain CDW54_RS08770 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS08770 PF00367 phosphotransferase system, EIIB CDW54_RS08770 PF02378 Phosphotransferase system, EIIC CDW54_RS08775 PF00232 Glycosyl hydrolase family 1 CDW54_RS08780 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS08780 PF07702 UTRA domain CDW54_RS08805 PF03641 Possible lysine decarboxylase CDW54_RS08815 PF01712 Deoxynucleoside kinase CDW54_RS08825 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CDW54_RS08825 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS08830 PF00232 Glycosyl hydrolase family 1 CDW54_RS08840 PF00884 Sulfatase CDW54_RS08850 PF00334 Nucleoside diphosphate kinase CDW54_RS08855 PF00690 Cation transporter/ATPase, N-terminus CDW54_RS08855 PF00689 Cation transporting ATPase, C-terminus CDW54_RS08860 PF13419 Haloacid dehalogenase-like hydrolase CDW54_RS08870 PF00005 ABC transporter CDW54_RS08870 PF09383 NIL domain CDW54_RS08875 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS08880 PF03180 NLPA lipoprotein CDW54_RS08885 PF01546 Peptidase family M20/M25/M40 CDW54_RS08885 PF07687 Peptidase dimerisation domain CDW54_RS08890 PF03553 Na+/H+ antiporter family CDW54_RS08905 PF00324 Amino acid permease CDW54_RS08915 PF02558 Ketopantoate reductase PanE/ApbA CDW54_RS08915 PF08546 Ketopantoate reductase PanE/ApbA C terminal CDW54_RS08920 PF02595 Glycerate kinase family CDW54_RS08925 PF12848 ABC transporter CDW54_RS08925 PF00005 ABC transporter CDW54_RS08930 PF00300 Histidine phosphatase superfamily (branch 1) CDW54_RS08940 PF13580 SIS domain CDW54_RS08945 PF02378 Phosphotransferase system, EIIC CDW54_RS08945 PF00367 phosphotransferase system, EIIB CDW54_RS08950 PF07972 NrdI Flavodoxin like CDW54_RS08955 PF13520 Amino acid permease CDW54_RS08960 PF12679 ABC-2 family transporter protein CDW54_RS08965 PF00005 ABC transporter CDW54_RS08970 PF00893 Small Multidrug Resistance protein CDW54_RS08975 PF00872 Transposase, Mutator family CDW54_RS08990 PF01470 Pyroglutamyl peptidase CDW54_RS09005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDW54_RS09050 PF03167 Uracil DNA glycosylase superfamily CDW54_RS09055 PF01515 Phosphate acetyl/butaryl transferase CDW54_RS09060 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CDW54_RS09065 PF13302 Acetyltransferase (GNAT) domain CDW54_RS09075 PF00929 Exonuclease CDW54_RS09075 PF14579 Helix-hairpin-helix motif CDW54_RS09075 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDW54_RS09075 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDW54_RS09075 PF11490 DNA polymerase III polC-type N-terminus II CDW54_RS09075 PF14480 DNA polymerase III polC-type N-terminus I CDW54_RS09075 PF02811 PHP domain CDW54_RS09085 PF03372 Endonuclease/Exonuclease/phosphatase family CDW54_RS09090 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDW54_RS09095 PF01565 FAD binding domain CDW54_RS09095 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CDW54_RS09130 PF14537 Cytochrome c3 CDW54_RS09130 PF00890 FAD binding domain CDW54_RS09135 PF00109 Beta-ketoacyl synthase, N-terminal domain CDW54_RS09135 PF14765 Polyketide synthase dehydratase CDW54_RS09135 PF00698 Acyl transferase domain CDW54_RS09135 PF02801 Beta-ketoacyl synthase, C-terminal domain CDW54_RS09135 PF08659 KR domain CDW54_RS09135 PF00550 Phosphopantetheine attachment site CDW54_RS09135 PF16197 Ketoacyl-synthetase C-terminal extension CDW54_RS09135 PF08240 Alcohol dehydrogenase GroES-like domain CDW54_RS09140 PF13460 NAD(P)H-binding CDW54_RS09145 PF12822 ECF transporter, substrate-specific component CDW54_RS09150 PF02441 Flavoprotein CDW54_RS09155 PF04127 DNA / pantothenate metabolism flavoprotein CDW54_RS09155 PF02441 Flavoprotein CDW54_RS09160 PF08240 Alcohol dehydrogenase GroES-like domain CDW54_RS09160 PF00107 Zinc-binding dehydrogenase CDW54_RS09170 PF08402 TOBE domain CDW54_RS09170 PF00005 ABC transporter CDW54_RS09175 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS09180 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS09185 PF13416 Bacterial extracellular solute-binding protein CDW54_RS09195 PF01717 Cobalamin-independent synthase, Catalytic domain CDW54_RS09200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDW54_RS09200 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS09210 PF00005 ABC transporter CDW54_RS09210 PF16326 ABC transporter C-terminal domain CDW54_RS09210 PF12848 ABC transporter CDW54_RS09215 PF06971 Putative DNA-binding protein N-terminus CDW54_RS09215 PF02629 CoA binding domain CDW54_RS09225 PF03773 Predicted permease CDW54_RS09230 PF09323 Domain of unknown function (DUF1980) CDW54_RS09260 PF06135 IreB regulatory phosphoprotein CDW54_RS09265 PF03652 Holliday junction resolvase CDW54_RS09270 PF06949 Protein of unknown function (DUF1292) CDW54_RS09285 PF03390 2-hydroxycarboxylate transporter family CDW54_RS09290 PF00390 Malic enzyme, N-terminal domain CDW54_RS09290 PF03949 Malic enzyme, NAD binding domain CDW54_RS09300 PF01070 FMN-dependent dehydrogenase CDW54_RS09345 PF00005 ABC transporter CDW54_RS09360 PF01520 N-acetylmuramoyl-L-alanine amidase CDW54_RS09360 PF00395 S-layer homology domain CDW54_RS09370 PF11858 Domain of unknown function (DUF3378) CDW54_RS09370 PF01351 Ribonuclease HII CDW54_RS09385 PF01713 Smr domain CDW54_RS09385 PF00488 MutS domain V CDW54_RS09390 PF00085 Thioredoxin CDW54_RS09395 PF02151 UvrB/uvrC motif CDW54_RS09395 PF01541 GIY-YIG catalytic domain CDW54_RS09395 PF08459 UvrC Helix-hairpin-helix N-terminal CDW54_RS09400 PF13732 Domain of unknown function (DUF4162) CDW54_RS09400 PF00005 ABC transporter CDW54_RS09410 PF06874 Firmicute fructose-1,6-bisphosphatase CDW54_RS09425 PF07722 Peptidase C26 CDW54_RS09435 PF01496 V-type ATPase 116kDa subunit family CDW54_RS09440 PF00137 ATP synthase subunit C CDW54_RS09450 PF01992 ATP synthase (C/AC39) subunit CDW54_RS09455 PF01990 ATP synthase (F/14-kDa) subunit CDW54_RS09460 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDW54_RS09460 PF16886 ATPsynthase alpha/beta subunit N-term extension CDW54_RS09460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDW54_RS09465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDW54_RS09465 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDW54_RS09470 PF01813 ATP synthase subunit D CDW54_RS09475 PF02386 Cation transport protein CDW54_RS09480 PF00155 Aminotransferase class I and II CDW54_RS09480 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS09485 PF02423 Ornithine cyclodeaminase/mu-crystallin family CDW54_RS09490 PF02567 Phenazine biosynthesis-like protein CDW54_RS09495 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDW54_RS09500 PF00293 NUDIX domain CDW54_RS09510 PF01966 HD domain CDW54_RS09515 PF03099 Biotin/lipoate A/B protein ligase family CDW54_RS09525 PF05066 HB1, ASXL, restriction endonuclease HTH domain CDW54_RS09535 PF04542 Sigma-70 region 2 CDW54_RS09535 PF08281 Sigma-70, region 4 CDW54_RS09540 PF13739 Deacetylase PdaC CDW54_RS09540 PF11738 Protein of unknown function (DUF3298) CDW54_RS09545 PF01522 Polysaccharide deacetylase CDW54_RS09555 PF00309 Sigma-54 factor, Activator interacting domain (AID) CDW54_RS09555 PF04552 Sigma-54, DNA binding domain CDW54_RS09555 PF04963 Sigma-54 factor, core binding domain CDW54_RS09560 PF04198 Putative sugar-binding domain CDW54_RS09565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CDW54_RS09565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDW54_RS09570 PF00162 Phosphoglycerate kinase CDW54_RS09575 PF00121 Triosephosphate isomerase CDW54_RS09580 PF03952 Enolase, N-terminal domain CDW54_RS09580 PF00113 Enolase, C-terminal TIM barrel domain CDW54_RS09585 PF07687 Peptidase dimerisation domain CDW54_RS09585 PF01546 Peptidase family M20/M25/M40 CDW54_RS09595 PF01156 Inosine-uridine preferring nucleoside hydrolase CDW54_RS09605 PF14542 GCN5-related N-acetyl-transferase CDW54_RS09610 PF03840 Preprotein translocase SecG subunit CDW54_RS09620 PF08206 Ribonuclease B OB domain CDW54_RS09620 PF00575 S1 RNA binding domain CDW54_RS09620 PF17876 Cold shock domain CDW54_RS09620 PF00773 RNB domain CDW54_RS09625 PF01668 SmpB protein CDW54_RS09630 PF00119 ATP synthase A chain CDW54_RS09635 PF00137 ATP synthase subunit C CDW54_RS09640 PF00430 ATP synthase B/B' CF(0) CDW54_RS09645 PF00213 ATP synthase delta (OSCP) subunit CDW54_RS09650 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDW54_RS09650 PF00306 ATP synthase alpha/beta chain, C terminal domain CDW54_RS09650 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDW54_RS09655 PF00231 ATP synthase CDW54_RS09660 PF02874 ATP synthase alpha/beta family, beta-barrel domain CDW54_RS09660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CDW54_RS09665 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CDW54_RS09665 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CDW54_RS09675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDW54_RS09685 PF01809 Putative membrane protein insertion efficiency factor CDW54_RS09695 PF00480 ROK family CDW54_RS09715 PF00392 Bacterial regulatory proteins, gntR family CDW54_RS09715 PF07702 UTRA domain CDW54_RS09720 PF01205 Uncharacterized protein family UPF0029 CDW54_RS09720 PF09186 Domain of unknown function (DUF1949) CDW54_RS09730 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS09735 PF04851 Type III restriction enzyme, res subunit CDW54_RS09735 PF00271 Helicase conserved C-terminal domain CDW54_RS09745 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CDW54_RS09745 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CDW54_RS09750 PF07517 SecA DEAD-like domain CDW54_RS09750 PF02810 SEC-C motif CDW54_RS09750 PF01043 SecA preprotein cross-linking domain CDW54_RS09750 PF07516 SecA Wing and Scaffold domain CDW54_RS09760 PF00005 ABC transporter CDW54_RS09765 PF18075 FtsX extracellular domain CDW54_RS09765 PF02687 FtsX-like permease family CDW54_RS09770 PF13091 PLD-like domain CDW54_RS09770 PF13396 Phospholipase_D-nuclease N-terminal CDW54_RS09775 PF12849 PBP superfamily domain CDW54_RS09780 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS09785 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS09790 PF00005 ABC transporter CDW54_RS09795 PF00005 ABC transporter CDW54_RS09800 PF01895 PhoU domain CDW54_RS09835 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CDW54_RS09840 PF07475 HPr Serine kinase C-terminal domain CDW54_RS09840 PF02603 HPr Serine kinase N terminus CDW54_RS09845 PF01790 Prolipoprotein diacylglyceryl transferase CDW54_RS09850 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CDW54_RS09850 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CDW54_RS09855 PF00483 Nucleotidyl transferase CDW54_RS09865 PF12732 YtxH-like protein CDW54_RS09870 PF00557 Metallopeptidase family M24 CDW54_RS09870 PF01321 Creatinase/Prolidase N-terminal domain CDW54_RS09875 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS09880 PF00912 Transglycosylase CDW54_RS09880 PF00905 Penicillin binding protein transpeptidase domain CDW54_RS09890 PF01261 Xylose isomerase-like TIM barrel CDW54_RS09900 PF01566 Natural resistance-associated macrophage protein CDW54_RS09905 PF03672 Uncharacterised protein family (UPF0154) CDW54_RS09910 PF00664 ABC transporter transmembrane region CDW54_RS09910 PF00005 ABC transporter CDW54_RS09915 PF00664 ABC transporter transmembrane region CDW54_RS09915 PF00005 ABC transporter CDW54_RS09920 PF00874 PRD domain CDW54_RS09920 PF03123 CAT RNA binding domain CDW54_RS09925 PF02378 Phosphotransferase system, EIIC CDW54_RS09925 PF00367 phosphotransferase system, EIIB CDW54_RS09925 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CDW54_RS09930 PF01380 SIS domain CDW54_RS09930 PF01418 Helix-turn-helix domain, rpiR family CDW54_RS09940 PF11975 Family 4 glycosyl hydrolase C-terminal domain CDW54_RS09940 PF02056 Family 4 glycosyl hydrolase CDW54_RS09945 PF00232 Glycosyl hydrolase family 1 CDW54_RS09950 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS09955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDW54_RS09955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDW54_RS09955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDW54_RS09955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDW54_RS09960 PF01022 Bacterial regulatory protein, arsR family CDW54_RS09965 PF03618 Kinase/pyrophosphorylase CDW54_RS09970 PF01475 Ferric uptake regulator family CDW54_RS09975 PF01165 Ribosomal protein S21 CDW54_RS09980 PF09424 Yqey-like protein CDW54_RS09985 PF05525 Branched-chain amino acid transport protein CDW54_RS09990 PF02562 PhoH-like protein CDW54_RS09995 PF01966 HD domain CDW54_RS09995 PF07697 7TM-HD extracellular CDW54_RS09995 PF07698 7TM receptor with intracellular HD hydrolase CDW54_RS10000 PF02130 Uncharacterized protein family UPF0054 CDW54_RS10005 PF01219 Prokaryotic diacylglycerol kinase CDW54_RS10010 PF07650 KH domain CDW54_RS10010 PF01926 50S ribosome-binding GTPase CDW54_RS10015 PF02565 Recombination protein O C terminal CDW54_RS10015 PF11967 Recombination protein O N terminal CDW54_RS10020 PF02091 Glycyl-tRNA synthetase alpha subunit CDW54_RS10025 PF05746 DALR anticodon binding domain CDW54_RS10025 PF02092 Glycyl-tRNA synthetase beta subunit CDW54_RS10035 PF03816 Cell envelope-related transcriptional attenuator domain CDW54_RS10040 PF02706 Chain length determinant protein CDW54_RS10040 PF13807 G-rich domain on putative tyrosine kinase CDW54_RS10045 PF13614 AAA domain CDW54_RS10055 PF02397 Bacterial sugar transferase CDW54_RS10060 PF03808 Glycosyl transferase WecB/TagA/CpsF family CDW54_RS10080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CDW54_RS10080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CDW54_RS10095 PF02350 UDP-N-acetylglucosamine 2-epimerase CDW54_RS10115 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDW54_RS10115 PF05524 PEP-utilising enzyme, N-terminal CDW54_RS10115 PF00391 PEP-utilising enzyme, mobile domain CDW54_RS10115 PF02896 PEP-utilising enzyme, TIM barrel domain CDW54_RS10115 PF00381 PTS HPr component phosphorylation site CDW54_RS10125 PF02096 60Kd inner membrane protein CDW54_RS10135 PF00708 Acylphosphatase CDW54_RS10140 PF08032 RNA 2'-O ribose methyltransferase substrate binding CDW54_RS10140 PF00588 SpoU rRNA Methylase family CDW54_RS10160 PF00654 Voltage gated chloride channel CDW54_RS10170 PF07943 Penicillin-binding protein 5, C-terminal domain CDW54_RS10170 PF00768 D-alanyl-D-alanine carboxypeptidase CDW54_RS10185 PF00313 'Cold-shock' DNA-binding domain CDW54_RS10190 PF00929 Exonuclease CDW54_RS10190 PF04851 Type III restriction enzyme, res subunit CDW54_RS10190 PF13307 Helicase C-terminal domain CDW54_RS10200 PF00155 Aminotransferase class I and II CDW54_RS10205 PF00152 tRNA synthetases class II (D, K and N) CDW54_RS10205 PF01336 OB-fold nucleic acid binding domain CDW54_RS10215 PF13472 GDSL-like Lipase/Acylhydrolase family CDW54_RS10235 PF00403 Heavy-metal-associated domain CDW54_RS10240 PF13520 Amino acid permease CDW54_RS10255 PF03965 Penicillinase repressor CDW54_RS10260 PF00403 Heavy-metal-associated domain CDW54_RS10265 PF00403 Heavy-metal-associated domain CDW54_RS10285 PF17863 AAA lid domain CDW54_RS10285 PF07726 ATPase family associated with various cellular activities (AAA) CDW54_RS10300 PF00589 Phage integrase family CDW54_RS10300 PF02899 Phage integrase, N-terminal SAM-like domain CDW54_RS10320 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CDW54_RS10325 PF00872 Transposase, Mutator family CDW54_RS10345 PF12849 PBP superfamily domain CDW54_RS10355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS10355 PF00512 His Kinase A (phospho-acceptor) domain CDW54_RS10355 PF00989 PAS fold CDW54_RS10355 PF16736 Single Cache-like CDW54_RS10360 PF00072 Response regulator receiver domain CDW54_RS10360 PF00486 Transcriptional regulatory protein, C terminal CDW54_RS10370 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CDW54_RS10375 PF00448 SRP54-type protein, GTPase domain CDW54_RS10375 PF02978 Signal peptide binding domain CDW54_RS10375 PF02881 SRP54-type protein, helical bundle domain CDW54_RS10380 PF03352 Methyladenine glycosylase CDW54_RS10380 PF00117 Glutamine amidotransferase class-I CDW54_RS10380 PF13302 Acetyltransferase (GNAT) domain CDW54_RS10380 PF00958 GMP synthase C terminal domain CDW54_RS10380 PF13673 Acetyltransferase (GNAT) domain CDW54_RS10385 PF01872 RibD C-terminal domain CDW54_RS10390 PF03358 NADPH-dependent FMN reductase CDW54_RS10395 PF00886 Ribosomal protein S16 CDW54_RS10410 PF05239 PRC-barrel domain CDW54_RS10410 PF01782 RimM N-terminal domain CDW54_RS10415 PF01746 tRNA (Guanine-1)-methyltransferase CDW54_RS10420 PF01245 Ribosomal protein L19 CDW54_RS10450 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS10455 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS10465 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CDW54_RS10465 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDW54_RS10465 PF00205 Thiamine pyrophosphate enzyme, central domain CDW54_RS10470 PF03306 Alpha-acetolactate decarboxylase CDW54_RS10475 PF13185 GAF domain CDW54_RS10535 PF00072 Response regulator receiver domain CDW54_RS10535 PF00486 Transcriptional regulatory protein, C terminal CDW54_RS10540 PF00672 HAMP domain CDW54_RS10540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS10540 PF00512 His Kinase A (phospho-acceptor) domain CDW54_RS10560 PF00884 Sulfatase CDW54_RS10565 PF17785 PUA-like domain CDW54_RS10565 PF10672 S-adenosylmethionine-dependent methyltransferase CDW54_RS10570 PF01487 Type I 3-dehydroquinase CDW54_RS10575 PF04073 Aminoacyl-tRNA editing domain CDW54_RS10585 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDW54_RS10585 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CDW54_RS10590 PF00342 Phosphoglucose isomerase CDW54_RS10610 PF03009 Glycerophosphoryl diester phosphodiesterase family CDW54_RS10620 PF02627 Carboxymuconolactone decarboxylase family CDW54_RS10640 PF08359 YsiA-like protein, C-terminal region CDW54_RS10640 PF00440 Bacterial regulatory proteins, tetR family CDW54_RS10655 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CDW54_RS10660 PF13537 Glutamine amidotransferase domain CDW54_RS10660 PF00733 Asparagine synthase CDW54_RS10665 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) CDW54_RS10670 PF00471 Ribosomal protein L33 CDW54_RS10675 PF00186 Dihydrofolate reductase CDW54_RS10685 PF00005 ABC transporter CDW54_RS10690 PF01032 FecCD transport family CDW54_RS10695 PF01032 FecCD transport family CDW54_RS10700 PF01812 5-formyltetrahydrofolate cyclo-ligase family CDW54_RS10715 PF00480 ROK family CDW54_RS10720 PF00581 Rhodanese-like domain CDW54_RS10725 PF04343 Protein of unknown function, DUF488 CDW54_RS10740 PF16363 GDP-mannose 4,6 dehydratase CDW54_RS10745 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CDW54_RS10745 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CDW54_RS10750 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS10755 PF00814 Glycoprotease family CDW54_RS10760 PF00583 Acetyltransferase (GNAT) family CDW54_RS10765 PF00583 Acetyltransferase (GNAT) family CDW54_RS10770 PF00814 Glycoprotease family CDW54_RS10775 PF00027 Cyclic nucleotide-binding domain CDW54_RS10775 PF13545 Crp-like helix-turn-helix domain CDW54_RS10785 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDW54_RS10785 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDW54_RS10790 PF00696 Amino acid kinase family CDW54_RS10795 PF05746 DALR anticodon binding domain CDW54_RS10795 PF00750 tRNA synthetases class I (R) CDW54_RS10795 PF03485 Arginyl tRNA synthetase N terminal domain CDW54_RS10810 PF00266 Aminotransferase class-V CDW54_RS10815 PF01316 Arginine repressor, DNA binding domain CDW54_RS10815 PF02863 Arginine repressor, C-terminal domain CDW54_RS10820 PF00318 Ribosomal protein S2 CDW54_RS10825 PF00889 Elongation factor TS CDW54_RS10830 PF00696 Amino acid kinase family CDW54_RS10835 PF01765 Ribosome recycling factor CDW54_RS10840 PF01255 Putative undecaprenyl diphosphate synthase CDW54_RS10850 PF17820 PDZ domain CDW54_RS10850 PF02163 Peptidase family M50 CDW54_RS10855 PF04073 Aminoacyl-tRNA editing domain CDW54_RS10855 PF03129 Anticodon binding domain CDW54_RS10855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CDW54_RS10860 PF00929 Exonuclease CDW54_RS10860 PF02811 PHP domain CDW54_RS10860 PF14579 Helix-hairpin-helix motif CDW54_RS10860 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CDW54_RS10860 PF07733 Bacterial DNA polymerase III alpha NTPase domain CDW54_RS10860 PF11490 DNA polymerase III polC-type N-terminus II CDW54_RS10860 PF14480 DNA polymerase III polC-type N-terminus I CDW54_RS10865 PF17384 RimP C-terminal SH3 domain CDW54_RS10865 PF02576 RimP N-terminal domain CDW54_RS10870 PF13184 NusA-like KH domain CDW54_RS10870 PF08529 NusA N-terminal domain CDW54_RS10870 PF00575 S1 RNA binding domain CDW54_RS10875 PF04296 Protein of unknown function (DUF448) CDW54_RS10880 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CDW54_RS10885 PF11987 Translation-initiation factor 2 CDW54_RS10885 PF04760 Translation initiation factor IF-2, N-terminal region CDW54_RS10885 PF00009 Elongation factor Tu GTP binding domain CDW54_RS10890 PF02033 Ribosome-binding factor A CDW54_RS10895 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS10900 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase CDW54_RS10900 PF09363 XFP C-terminal domain CDW54_RS10900 PF09364 XFP N-terminal domain CDW54_RS10905 PF16198 tRNA pseudouridylate synthase B C-terminal domain CDW54_RS10905 PF01509 TruB family pseudouridylate synthase (N terminal domain) CDW54_RS10910 PF01687 Riboflavin kinase CDW54_RS10910 PF06574 FAD synthetase CDW54_RS10920 PF06800 Sugar transport protein CDW54_RS10925 PF12728 Helix-turn-helix domain CDW54_RS10930 PF08818 Domain of unknown function (DU1801) CDW54_RS10940 PF02016 LD-carboxypeptidase N-terminal domain CDW54_RS10940 PF17676 LD-carboxypeptidase C-terminal domain CDW54_RS10950 PF01965 DJ-1/PfpI family CDW54_RS10975 PF06969 HemN C-terminal domain CDW54_RS10975 PF04055 Radical SAM superfamily CDW54_RS10980 PF01628 HrcA protein C terminal domain CDW54_RS10985 PF01025 GrpE CDW54_RS10990 PF00012 Hsp70 protein CDW54_RS10995 PF00684 DnaJ central domain CDW54_RS10995 PF01556 DnaJ C terminal domain CDW54_RS10995 PF00226 DnaJ domain CDW54_RS11000 PF00005 ABC transporter CDW54_RS11005 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS11010 PF00271 Helicase conserved C-terminal domain CDW54_RS11010 PF04851 Type III restriction enzyme, res subunit CDW54_RS11010 PF12344 Ultra-violet resistance protein B CDW54_RS11010 PF17757 UvrB interaction domain CDW54_RS11010 PF02151 UvrB/uvrC motif CDW54_RS11015 PF17755 UvrA DNA-binding domain CDW54_RS11015 PF17760 UvrA interaction domain CDW54_RS11015 PF00005 ABC transporter CDW54_RS11025 PF01177 Asp/Glu/Hydantoin racemase CDW54_RS11030 PF03668 P-loop ATPase protein family CDW54_RS11035 PF01933 Uncharacterised protein family UPF0052 CDW54_RS11040 PF14527 WhiA LAGLIDADG-like domain CDW54_RS11040 PF02650 WhiA C-terminal HTH domain CDW54_RS11040 PF10298 WhiA N-terminal LAGLIDADG-like domain CDW54_RS11065 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CDW54_RS11065 PF10371 Domain of unknown function CDW54_RS11065 PF12838 4Fe-4S dicluster domain CDW54_RS11065 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CDW54_RS11065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CDW54_RS11065 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CDW54_RS11070 PF02457 DisA bacterial checkpoint controller nucleotide-binding CDW54_RS11080 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CDW54_RS11080 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CDW54_RS11080 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CDW54_RS11080 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CDW54_RS11105 PF01380 SIS domain CDW54_RS11120 PF01343 Peptidase family S49 CDW54_RS11125 PF06271 RDD family CDW54_RS11135 PF05697 Bacterial trigger factor protein (TF) CDW54_RS11135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CDW54_RS11135 PF05698 Bacterial trigger factor protein (TF) C-terminus CDW54_RS11140 PF06689 ClpX C4-type zinc finger CDW54_RS11140 PF10431 C-terminal, D2-small domain, of ClpB protein CDW54_RS11140 PF07724 AAA domain (Cdc48 subfamily) CDW54_RS11145 PF01926 50S ribosome-binding GTPase CDW54_RS11160 PF00455 DeoR C terminal sensor domain CDW54_RS11160 PF08220 DeoR-like helix-turn-helix domain CDW54_RS11165 PF00294 pfkB family carbohydrate kinase CDW54_RS11170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS11170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDW54_RS11175 PF00654 Voltage gated chloride channel CDW54_RS11180 PF13361 UvrD-like helicase C-terminal domain CDW54_RS11180 PF00580 UvrD/REP helicase N-terminal domain CDW54_RS11185 PF12826 Helix-hairpin-helix motif CDW54_RS11185 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CDW54_RS11185 PF03120 NAD-dependent DNA ligase OB-fold domain CDW54_RS11185 PF00533 BRCA1 C Terminus (BRCT) domain CDW54_RS11185 PF01653 NAD-dependent DNA ligase adenylation domain CDW54_RS11190 PF02686 Glu-tRNAGln amidotransferase C subunit CDW54_RS11195 PF01425 Amidase CDW54_RS11200 PF02637 GatB domain CDW54_RS11200 PF02934 GatB/GatE catalytic domain CDW54_RS11205 PF00781 Diacylglycerol kinase catalytic domain CDW54_RS11210 PF05958 tRNA (Uracil-5-)-methyltransferase CDW54_RS11245 PF00356 Bacterial regulatory proteins, lacI family CDW54_RS11250 PF16874 Glycosyl hydrolase family 36 C-terminal domain CDW54_RS11250 PF16875 Glycosyl hydrolase family 36 N-terminal domain CDW54_RS11260 PF02929 Beta galactosidase small chain CDW54_RS11270 PF18152 DAHP synthase ferredoxin-like domain CDW54_RS11270 PF00793 DAHP synthetase I family CDW54_RS11275 PF01761 3-dehydroquinate synthase CDW54_RS11280 PF01264 Chorismate synthase CDW54_RS11285 PF01842 ACT domain CDW54_RS11285 PF02153 Prephenate dehydrogenase CDW54_RS11290 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CDW54_RS11295 PF01202 Shikimate kinase CDW54_RS11300 PF00800 Prephenate dehydratase CDW54_RS11305 PF00672 HAMP domain CDW54_RS11305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS11305 PF06580 Histidine kinase CDW54_RS11305 PF02743 Cache domain CDW54_RS11310 PF00072 Response regulator receiver domain CDW54_RS11310 PF12833 Helix-turn-helix domain CDW54_RS11320 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS11325 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS11330 PF07556 Protein of unknown function (DUF1538) CDW54_RS11335 PF07556 Protein of unknown function (DUF1538) CDW54_RS11355 PF00300 Histidine phosphatase superfamily (branch 1) CDW54_RS11360 PF13419 Haloacid dehalogenase-like hydrolase CDW54_RS11370 PF00375 Sodium:dicarboxylate symporter family CDW54_RS11380 PF00581 Rhodanese-like domain CDW54_RS11380 PF17773 UPF0176 acylphosphatase like domain CDW54_RS11380 PF12368 Rhodanase C-terminal CDW54_RS11390 PF16921 Tex protein YqgF-like domain CDW54_RS11390 PF09371 Tex-like protein N-terminal domain CDW54_RS11390 PF00575 S1 RNA binding domain CDW54_RS11390 PF17674 HHH domain CDW54_RS11395 PF10263 SprT-like family CDW54_RS11400 PF02698 DUF218 domain CDW54_RS11405 PF01225 Mur ligase family, catalytic domain CDW54_RS11405 PF02875 Mur ligase family, glutamate ligase domain CDW54_RS11405 PF08245 Mur ligase middle domain CDW54_RS11415 PF01027 Inhibitor of apoptosis-promoting Bax1 CDW54_RS11420 PF01367 5'-3' exonuclease, C-terminal SAM fold CDW54_RS11420 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CDW54_RS11420 PF00476 DNA polymerase family A CDW54_RS11425 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CDW54_RS11425 PF06827 Zinc finger found in FPG and IleRS CDW54_RS11425 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CDW54_RS11430 PF01121 Dephospho-CoA kinase CDW54_RS11440 PF03477 ATP cone domain CDW54_RS11450 PF07319 Primosomal protein DnaI N-terminus CDW54_RS11450 PF01695 IstB-like ATP binding protein CDW54_RS11460 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CDW54_RS11465 PF01784 NIF3 (NGG1p interacting factor 3) CDW54_RS11470 PF01546 Peptidase family M20/M25/M40 CDW54_RS11470 PF07687 Peptidase dimerisation domain CDW54_RS11475 PF00781 Diacylglycerol kinase catalytic domain CDW54_RS11510 PF00004 ATPase family associated with various cellular activities (AAA) CDW54_RS11510 PF17871 AAA lid domain CDW54_RS11510 PF02861 Clp amino terminal domain, pathogenicity island component CDW54_RS11510 PF10431 C-terminal, D2-small domain, of ClpB protein CDW54_RS11510 PF07724 AAA domain (Cdc48 subfamily) CDW54_RS11530 PF00009 Elongation factor Tu GTP binding domain CDW54_RS11530 PF00679 Elongation factor G C-terminus CDW54_RS11530 PF03144 Elongation factor Tu domain 2 CDW54_RS11530 PF06421 GTP-binding protein LepA C-terminus CDW54_RS11555 PF00872 Transposase, Mutator family CDW54_RS11565 PF00313 'Cold-shock' DNA-binding domain CDW54_RS11570 PF01022 Bacterial regulatory protein, arsR family CDW54_RS11595 PF05857 TraX protein CDW54_RS11630 PF00106 short chain dehydrogenase CDW54_RS11645 PF03608 PTS system enzyme II sorbitol-specific factor CDW54_RS11650 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CDW54_RS11650 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CDW54_RS11660 PF00923 Transaldolase/Fructose-6-phosphate aldolase CDW54_RS11665 PF13145 PPIC-type PPIASE domain CDW54_RS11700 PF01418 Helix-turn-helix domain, rpiR family CDW54_RS11700 PF02685 Glucokinase CDW54_RS11700 PF01380 SIS domain CDW54_RS11715 PF13419 Haloacid dehalogenase-like hydrolase CDW54_RS11720 PF00313 'Cold-shock' DNA-binding domain CDW54_RS11730 PF01381 Helix-turn-helix CDW54_RS11760 PF01501 Glycosyl transferase family 8 CDW54_RS11765 PF01501 Glycosyl transferase family 8 CDW54_RS11795 PF03780 Asp23 family, cell envelope-related function CDW54_RS11800 PF04226 Transglycosylase associated protein CDW54_RS11815 PF13443 Cro/C1-type HTH DNA-binding domain CDW54_RS11820 PF11188 Protein of unknown function (DUF2975) CDW54_RS11835 PF03780 Asp23 family, cell envelope-related function CDW54_RS11840 PF04226 Transglycosylase associated protein CDW54_RS11850 PF00909 Ammonium Transporter Family CDW54_RS11855 PF13520 Amino acid permease CDW54_RS11860 PF04960 Glutaminase CDW54_RS11870 PF02779 Transketolase, pyrimidine binding domain CDW54_RS11870 PF02780 Transketolase, C-terminal domain CDW54_RS11870 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CDW54_RS11880 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CDW54_RS11885 PF01613 Flavin reductase like domain CDW54_RS11905 PF00905 Penicillin binding protein transpeptidase domain CDW54_RS11905 PF05223 NTF2-like N-terminal transpeptidase domain CDW54_RS11905 PF03717 Penicillin-binding Protein dimerisation domain CDW54_RS11910 PF00999 Sodium/hydrogen exchanger family CDW54_RS11925 PF13192 Thioredoxin domain CDW54_RS11925 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS11940 PF01232 Mannitol dehydrogenase Rossmann domain CDW54_RS11940 PF08125 Mannitol dehydrogenase C-terminal domain CDW54_RS11945 PF03786 D-mannonate dehydratase (UxuA) CDW54_RS11960 PF01594 AI-2E family transporter CDW54_RS11965 PF01047 MarR family CDW54_RS11970 PF02566 OsmC-like protein CDW54_RS11980 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CDW54_RS11980 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CDW54_RS11985 PF02903 Alpha amylase, N-terminal ig-like domain CDW54_RS11985 PF00128 Alpha amylase, catalytic domain CDW54_RS11990 PF13416 Bacterial extracellular solute-binding protein CDW54_RS11995 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS12000 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS12020 PF01180 Dihydroorotate dehydrogenase CDW54_RS12025 PF01425 Amidase CDW54_RS12030 PF00497 Bacterial extracellular solute-binding proteins, family 3 CDW54_RS12035 PF00528 Binding-protein-dependent transport system inner membrane component CDW54_RS12055 PF00625 Guanylate kinase CDW54_RS12060 PF01773 Na+ dependent nucleoside transporter N-terminus CDW54_RS12060 PF07662 Na+ dependent nucleoside transporter C-terminus CDW54_RS12065 PF08903 Domain of unknown function (DUF1846) CDW54_RS12095 PF16916 Dimerisation domain of Zinc Transporter CDW54_RS12095 PF01545 Cation efflux family CDW54_RS12115 PF14667 Polysaccharide biosynthesis C-terminal domain CDW54_RS12115 PF01943 Polysaccharide biosynthesis protein CDW54_RS12120 PF02645 Uncharacterised protein, DegV family COG1307 CDW54_RS12135 PF00128 Alpha amylase, catalytic domain CDW54_RS12135 PF16657 Maltogenic Amylase, C-terminal domain CDW54_RS12140 PF04260 Protein of unknown function (DUF436) CDW54_RS12150 PF08543 Phosphomethylpyrimidine kinase CDW54_RS12155 PF00501 AMP-binding enzyme CDW54_RS12155 PF13193 AMP-binding enzyme C-terminal domain CDW54_RS12175 PF00512 His Kinase A (phospho-acceptor) domain CDW54_RS12175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CDW54_RS12180 PF00486 Transcriptional regulatory protein, C terminal CDW54_RS12180 PF00072 Response regulator receiver domain CDW54_RS12190 PF00005 ABC transporter CDW54_RS12215 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CDW54_RS12215 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CDW54_RS12225 PF00874 PRD domain CDW54_RS12225 PF05043 Mga helix-turn-helix domain CDW54_RS12225 PF08279 HTH domain CDW54_RS12225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CDW54_RS12225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CDW54_RS12235 PF03611 PTS system sugar-specific permease component CDW54_RS12255 PF02311 AraC-like ligand binding domain CDW54_RS12255 PF12833 Helix-turn-helix domain CDW54_RS12260 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CDW54_RS12260 PF00056 lactate/malate dehydrogenase, NAD binding domain CDW54_RS12280 PF01751 Toprim domain CDW54_RS12280 PF01131 DNA topoisomerase CDW54_RS12290 PF03816 Cell envelope-related transcriptional attenuator domain CDW54_RS12295 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CDW54_RS12295 PF08501 Shikimate dehydrogenase substrate binding domain CDW54_RS12300 PF00005 ABC transporter CDW54_RS12305 PF02653 Branched-chain amino acid transport system / permease component CDW54_RS12320 PF05670 NFACT protein RNA binding domain CDW54_RS12330 PF03466 LysR substrate binding domain CDW54_RS12330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CDW54_RS12350 PF00156 Phosphoribosyl transferase domain CDW54_RS12355 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CDW54_RS12360 PF01180 Dihydroorotate dehydrogenase CDW54_RS12365 PF00970 Oxidoreductase FAD-binding domain CDW54_RS12365 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CDW54_RS12370 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDW54_RS12370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CDW54_RS12370 PF02142 MGS-like domain CDW54_RS12375 PF00117 Glutamine amidotransferase class-I CDW54_RS12375 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CDW54_RS12380 PF01979 Amidohydrolase family CDW54_RS12385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CDW54_RS12385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CDW54_RS12390 PF00860 Permease family CDW54_RS12395 PF00156 Phosphoribosyl transferase domain CDW54_RS12400 PF01479 S4 domain CDW54_RS12400 PF00849 RNA pseudouridylate synthase CDW54_RS12405 PF01252 Signal peptidase (SPase) II CDW54_RS12420 PF01268 Formate--tetrahydrofolate ligase CDW54_RS12425 PF00313 'Cold-shock' DNA-binding domain CDW54_RS12430 PF17255 EbsA-like protein CDW54_RS12435 PF13456 Reverse transcriptase-like CDW54_RS12445 PF12822 ECF transporter, substrate-specific component CDW54_RS12450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CDW54_RS12450 PF01411 tRNA synthetases class II (A) CDW54_RS12450 PF02272 DHHA1 domain CDW54_RS12460 PF13673 Acetyltransferase (GNAT) domain CDW54_RS12465 PF00271 Helicase conserved C-terminal domain CDW54_RS12465 PF00270 DEAD/DEAH box helicase CDW54_RS12480 PF13520 Amino acid permease CDW54_RS12485 PF01370 NAD dependent epimerase/dehydratase family CDW54_RS12490 PF00155 Aminotransferase class I and II CDW54_RS12505 PF01966 HD domain CDW54_RS12510 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CDW54_RS12515 PF02926 THUMP domain CDW54_RS12515 PF01170 Putative RNA methylase family UPF0020 CDW54_RS12525 PF05103 DivIVA protein CDW54_RS12530 PF06908 YspA SLOG family CDW54_RS12535 PF03838 Recombination protein U CDW54_RS12540 PF00912 Transglycosylase CDW54_RS12540 PF00905 Penicillin binding protein transpeptidase domain CDW54_RS12550 PF10576 Iron-sulfur binding domain of endonuclease III CDW54_RS12550 PF00633 Helix-hairpin-helix motif CDW54_RS12550 PF00730 HhH-GPD superfamily base excision DNA repair protein CDW54_RS12555 PF07261 Replication initiation and membrane attachment CDW54_RS12560 PF07690 Major Facilitator Superfamily CDW54_RS12565 PF01047 MarR family CDW54_RS12575 PF07992 Pyridine nucleotide-disulphide oxidoreductase CDW54_RS12575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CDW54_RS12580 PF01475 Ferric uptake regulator family CDW54_RS12585 PF00291 Pyridoxal-phosphate dependent enzyme CDW54_RS12590 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CDW54_RS12590 PF01476 LysM domain CDW54_RS12595 PF00456 Transketolase, thiamine diphosphate binding domain CDW54_RS12595 PF02779 Transketolase, pyrimidine binding domain CDW54_RS12595 PF02780 Transketolase, C-terminal domain CDW54_RS12600 PF05979 Bacterial protein of unknown function (DUF896) CDW54_RS12605 PF01726 LexA DNA binding domain CDW54_RS12605 PF00717 Peptidase S24-like CDW54_RS12615 PF00156 Phosphoribosyl transferase domain CDW54_RS12620 PF17768 RecJ OB domain CDW54_RS12620 PF02272 DHHA1 domain CDW54_RS12620 PF01368 DHH family CDW54_RS12620 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CDW54_RS12625 PF06305 Lipopolysaccharide assembly protein A domain CDW54_RS12630 PF00106 short chain dehydrogenase CDW54_RS12635 PF00753 Metallo-beta-lactamase superfamily CDW54_RS12635 PF12706 Beta-lactamase superfamily domain CDW54_RS12645 PF01018 GTP1/OBG CDW54_RS12645 PF09269 Domain of unknown function (DUF1967) CDW54_RS12645 PF01926 50S ribosome-binding GTPase CDW54_RS12665 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CDW54_RS12670 PF07977 FabA-like domain CDW54_RS12680 PF01063 Amino-transferase class IV CDW54_RS12690 PF00924 Mechanosensitive ion channel CDW54_RS12705 PF03725 3' exoribonuclease family, domain 2 CDW54_RS12705 PF01138 3' exoribonuclease family, domain 1 CDW54_RS12710 PF01177 Asp/Glu/Hydantoin racemase