locus-tag class description DDJ96_RS00005 PF00308 Bacterial dnaA protein DDJ96_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix DDJ96_RS00010 PF02767 DNA polymerase III beta subunit, central domain DDJ96_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DDJ96_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DDJ96_RS00020 PF02463 RecF/RecN/SMC N terminal domain DDJ96_RS00025 PF00986 DNA gyrase B subunit, carboxyl terminus DDJ96_RS00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS00025 PF00204 DNA gyrase B DDJ96_RS00025 PF01751 Toprim domain DDJ96_RS00030 PF03989 DNA gyrase C-terminal domain, beta-propeller DDJ96_RS00030 PF00521 DNA gyrase/topoisomerase IV, subunit A DDJ96_RS00035 PF01250 Ribosomal protein S6 DDJ96_RS00040 PF00436 Single-strand binding protein family DDJ96_RS00045 PF01084 Ribosomal protein S18 DDJ96_RS00050 PF01368 DHH family DDJ96_RS00050 PF02272 DHHA1 domain DDJ96_RS00055 PF03948 Ribosomal protein L9, C-terminal domain DDJ96_RS00055 PF01281 Ribosomal protein L9, N-terminal domain DDJ96_RS00060 PF03796 DnaB-like helicase C terminal domain DDJ96_RS00060 PF00772 DnaB-like helicase N terminal domain DDJ96_RS00065 PF00709 Adenylosuccinate synthetase DDJ96_RS00075 PF02645 Uncharacterised protein, DegV family COG1307 DDJ96_RS00080 PF12848 ABC transporter DDJ96_RS00080 PF00005 ABC transporter DDJ96_RS00090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDJ96_RS00090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDJ96_RS00090 PF00205 Thiamine pyrophosphate enzyme, central domain DDJ96_RS00095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDJ96_RS00095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDJ96_RS00100 PF02535 ZIP Zinc transporter DDJ96_RS00110 PF06736 Protein of unknown function (DUF1211) DDJ96_RS00125 PF00232 Glycosyl hydrolase family 1 DDJ96_RS00130 PF02378 Phosphotransferase system, EIIC DDJ96_RS00140 PF03819 MazG nucleotide pyrophosphohydrolase domain DDJ96_RS00155 PF00005 ABC transporter DDJ96_RS00155 PF00664 ABC transporter transmembrane region DDJ96_RS00170 PF09383 NIL domain DDJ96_RS00170 PF00005 ABC transporter DDJ96_RS00175 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS00180 PF03180 NLPA lipoprotein DDJ96_RS00195 PF02796 Helix-turn-helix domain of resolvase DDJ96_RS00195 PF00239 Resolvase, N terminal domain DDJ96_RS00220 PF03073 TspO/MBR family DDJ96_RS00240 PF02311 AraC-like ligand binding domain DDJ96_RS00240 PF12833 Helix-turn-helix domain DDJ96_RS00245 PF01547 Bacterial extracellular solute-binding protein DDJ96_RS00250 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS00255 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS00260 PF01055 Glycosyl hydrolases family 31 DDJ96_RS00260 PF13802 Galactose mutarotase-like DDJ96_RS00295 PF00117 Glutamine amidotransferase class-I DDJ96_RS00295 PF00958 GMP synthase C terminal domain DDJ96_RS00295 PF02540 NAD synthase DDJ96_RS00300 PF00485 Phosphoribulokinase / Uridine kinase family DDJ96_RS00305 PF03466 LysR substrate binding domain DDJ96_RS00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDJ96_RS00310 PF05175 Methyltransferase small domain DDJ96_RS00315 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS00320 PF02885 Glycosyl transferase family, helical bundle domain DDJ96_RS00320 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DDJ96_RS00320 PF00591 Glycosyl transferase family, a/b domain DDJ96_RS00325 PF01791 DeoC/LacD family aldolase DDJ96_RS00330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDJ96_RS00335 PF02608 ABC transporter substrate-binding protein PnrA-like DDJ96_RS00340 PF00005 ABC transporter DDJ96_RS00345 PF02653 Branched-chain amino acid transport system / permease component DDJ96_RS00350 PF02653 Branched-chain amino acid transport system / permease component DDJ96_RS00355 PF01676 Metalloenzyme superfamily DDJ96_RS00360 PF01048 Phosphorylase superfamily DDJ96_RS00365 PF01048 Phosphorylase superfamily DDJ96_RS00380 PF00196 Bacterial regulatory proteins, luxR family DDJ96_RS00380 PF00072 Response regulator receiver domain DDJ96_RS00385 PF00300 Histidine phosphatase superfamily (branch 1) DDJ96_RS00390 PF00239 Resolvase, N terminal domain DDJ96_RS00395 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DDJ96_RS00400 PF00164 Ribosomal protein S12/S23 DDJ96_RS00405 PF00177 Ribosomal protein S7p/S5e DDJ96_RS00410 PF03144 Elongation factor Tu domain 2 DDJ96_RS00410 PF00009 Elongation factor Tu GTP binding domain DDJ96_RS00410 PF03764 Elongation factor G, domain IV DDJ96_RS00410 PF14492 Elongation Factor G, domain II DDJ96_RS00410 PF00679 Elongation factor G C-terminus DDJ96_RS00415 PF00009 Elongation factor Tu GTP binding domain DDJ96_RS00415 PF03144 Elongation factor Tu domain 2 DDJ96_RS00415 PF03143 Elongation factor Tu C-terminal domain DDJ96_RS00420 PF00338 Ribosomal protein S10p/S20e DDJ96_RS00425 PF00297 Ribosomal protein L3 DDJ96_RS00430 PF00573 Ribosomal protein L4/L1 family DDJ96_RS00435 PF00276 Ribosomal protein L23 DDJ96_RS00440 PF00181 Ribosomal Proteins L2, RNA binding domain DDJ96_RS00440 PF03947 Ribosomal Proteins L2, C-terminal domain DDJ96_RS00445 PF00203 Ribosomal protein S19 DDJ96_RS00450 PF00237 Ribosomal protein L22p/L17e DDJ96_RS00455 PF00189 Ribosomal protein S3, C-terminal domain DDJ96_RS00455 PF07650 KH domain DDJ96_RS00460 PF00252 Ribosomal protein L16p/L10e DDJ96_RS00465 PF00831 Ribosomal L29 protein DDJ96_RS00470 PF00366 Ribosomal protein S17 DDJ96_RS00475 PF00238 Ribosomal protein L14p/L23e DDJ96_RS00480 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DDJ96_RS00480 PF00467 KOW motif DDJ96_RS00485 PF00281 Ribosomal protein L5 DDJ96_RS00485 PF00673 ribosomal L5P family C-terminus DDJ96_RS00490 PF00253 Ribosomal protein S14p/S29e DDJ96_RS00495 PF00410 Ribosomal protein S8 DDJ96_RS00500 PF00347 Ribosomal protein L6 DDJ96_RS00505 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DDJ96_RS00510 PF03719 Ribosomal protein S5, C-terminal domain DDJ96_RS00510 PF00333 Ribosomal protein S5, N-terminal domain DDJ96_RS00515 PF00327 Ribosomal protein L30p/L7e DDJ96_RS00520 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DDJ96_RS00525 PF00344 SecY translocase DDJ96_RS00530 PF05191 Adenylate kinase, active site lid DDJ96_RS00535 PF01176 Translation initiation factor 1A / IF-1 DDJ96_RS00540 PF00444 Ribosomal protein L36 DDJ96_RS00545 PF00416 Ribosomal protein S13/S18 DDJ96_RS00550 PF00411 Ribosomal protein S11 DDJ96_RS00555 PF01000 RNA polymerase Rpb3/RpoA insert domain DDJ96_RS00555 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DDJ96_RS00555 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DDJ96_RS00560 PF01196 Ribosomal protein L17 DDJ96_RS00565 PF00005 ABC transporter DDJ96_RS00570 PF00005 ABC transporter DDJ96_RS00575 PF02361 Cobalt transport protein DDJ96_RS00580 PF01416 tRNA pseudouridine synthase DDJ96_RS00590 PF00830 Ribosomal L28 family DDJ96_RS00600 PF03780 Asp23 family, cell envelope-related function DDJ96_RS00605 PF02734 DAK2 domain DDJ96_RS00605 PF13684 Dihydroxyacetone kinase family DDJ96_RS00610 PF00271 Helicase conserved C-terminal domain DDJ96_RS00610 PF17191 RecG wedge domain DDJ96_RS00610 PF00270 DEAD/DEAH box helicase DDJ96_RS00615 PF02504 Fatty acid synthesis protein DDJ96_RS00620 PF00550 Phosphopantetheine attachment site DDJ96_RS00625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDJ96_RS00625 PF00005 ABC transporter DDJ96_RS00630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDJ96_RS00630 PF00005 ABC transporter DDJ96_RS00635 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS00640 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS00645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDJ96_RS00660 PF00005 ABC transporter DDJ96_RS00670 PF01381 Helix-turn-helix DDJ96_RS00675 PF14622 Ribonuclease-III-like DDJ96_RS00675 PF00035 Double-stranded RNA binding motif DDJ96_RS00680 PF06470 SMC proteins Flexible Hinge Domain DDJ96_RS00680 PF02463 RecF/RecN/SMC N terminal domain DDJ96_RS00690 PF00448 SRP54-type protein, GTPase domain DDJ96_RS00690 PF02881 SRP54-type protein, helical bundle domain DDJ96_RS00695 PF04262 Glutamate-cysteine ligase DDJ96_RS00695 PF02655 ATP-grasp domain DDJ96_RS00695 PF18419 ATP-grasp-like domain DDJ96_RS00705 PF01032 FecCD transport family DDJ96_RS00710 PF01032 FecCD transport family DDJ96_RS00715 PF00005 ABC transporter DDJ96_RS00720 PF01497 Periplasmic binding protein DDJ96_RS00745 PF00230 Major intrinsic protein DDJ96_RS00770 PF02632 BioY family DDJ96_RS00775 PF00163 Ribosomal protein S4/S9 N-terminal domain DDJ96_RS00775 PF01479 S4 domain DDJ96_RS00795 PF13277 YmdB-like protein DDJ96_RS00805 PF05188 MutS domain II DDJ96_RS00805 PF05190 MutS family domain IV DDJ96_RS00805 PF00488 MutS domain V DDJ96_RS00805 PF05192 MutS domain III DDJ96_RS00805 PF01624 MutS domain I DDJ96_RS00810 PF01119 DNA mismatch repair protein, C-terminal domain DDJ96_RS00810 PF08676 MutL C terminal dimerisation domain DDJ96_RS00815 PF02545 Maf-like protein DDJ96_RS00825 PF01641 SelR domain DDJ96_RS00830 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS00830 PF07702 UTRA domain DDJ96_RS00845 PF00367 phosphotransferase system, EIIB DDJ96_RS00845 PF02378 Phosphotransferase system, EIIC DDJ96_RS00850 PF01330 RuvA N terminal domain DDJ96_RS00850 PF07499 RuvA, C-terminal domain DDJ96_RS00855 PF17864 RuvB AAA lid domain DDJ96_RS00855 PF05491 RuvB C-terminal winged helix domain DDJ96_RS00855 PF05496 Holliday junction DNA helicase RuvB P-loop domain DDJ96_RS00865 PF01451 Low molecular weight phosphotyrosine protein phosphatase DDJ96_RS00875 PF05525 Branched-chain amino acid transport protein DDJ96_RS00880 PF00005 ABC transporter DDJ96_RS00885 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS00895 PF02146 Sir2 family DDJ96_RS00900 PF12464 Maltose acetyltransferase DDJ96_RS00900 PF14602 Hexapeptide repeat of succinyl-transferase DDJ96_RS00905 PF08279 HTH domain DDJ96_RS00905 PF02829 3H domain DDJ96_RS00925 PF01327 Polypeptide deformylase DDJ96_RS00930 PF00312 Ribosomal protein S15 DDJ96_RS00935 PF03725 3' exoribonuclease family, domain 2 DDJ96_RS00935 PF00575 S1 RNA binding domain DDJ96_RS00935 PF00013 KH domain DDJ96_RS00935 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DDJ96_RS00935 PF01138 3' exoribonuclease family, domain 1 DDJ96_RS00945 PF02705 K+ potassium transporter DDJ96_RS00955 PF03471 Transporter associated domain DDJ96_RS00955 PF00571 CBS domain DDJ96_RS00955 PF01595 Cyclin M transmembrane N-terminal domain DDJ96_RS00960 PF01554 MatE DDJ96_RS00970 PF01386 Ribosomal L25p family DDJ96_RS00970 PF14693 Ribosomal protein TL5, C-terminal domain DDJ96_RS00975 PF00849 RNA pseudouridylate synthase DDJ96_RS00975 PF01479 S4 domain DDJ96_RS00990 PF13419 Haloacid dehalogenase-like hydrolase DDJ96_RS00995 PF00485 Phosphoribulokinase / Uridine kinase family DDJ96_RS01015 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DDJ96_RS01025 PF03109 ABC1 family DDJ96_RS01030 PF01820 D-ala D-ala ligase N-terminus DDJ96_RS01030 PF07478 D-ala D-ala ligase C-terminus DDJ96_RS01035 PF08245 Mur ligase middle domain DDJ96_RS01035 PF01225 Mur ligase family, catalytic domain DDJ96_RS01035 PF02875 Mur ligase family, glutamate ligase domain DDJ96_RS01040 PF00271 Helicase conserved C-terminal domain DDJ96_RS01040 PF00270 DEAD/DEAH box helicase DDJ96_RS01050 PF01648 4'-phosphopantetheinyl transferase superfamily DDJ96_RS01055 PF00842 Alanine racemase, C-terminal domain DDJ96_RS01055 PF01168 Alanine racemase, N-terminal domain DDJ96_RS01060 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DDJ96_RS01070 PF01061 ABC-2 type transporter DDJ96_RS01075 PF13520 Amino acid permease DDJ96_RS01090 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS01095 PF04069 Substrate binding domain of ABC-type glycine betaine transport system DDJ96_RS01100 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS01105 PF00005 ABC transporter DDJ96_RS01105 PF00571 CBS domain DDJ96_RS01110 PF02547 Queuosine biosynthesis protein DDJ96_RS01115 PF00690 Cation transporter/ATPase, N-terminus DDJ96_RS01115 PF00689 Cation transporting ATPase, C-terminus DDJ96_RS01125 PF01702 Queuine tRNA-ribosyltransferase DDJ96_RS01130 PF02699 Preprotein translocase subunit DDJ96_RS01135 PF00465 Iron-containing alcohol dehydrogenase DDJ96_RS01135 PF00171 Aldehyde dehydrogenase family DDJ96_RS01145 PF07470 Glycosyl Hydrolase Family 88 DDJ96_RS01150 PF03480 Bacterial extracellular solute-binding protein, family 7 DDJ96_RS01160 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DDJ96_RS01175 PF01614 Bacterial transcriptional regulator DDJ96_RS01175 PF09339 IclR helix-turn-helix domain DDJ96_RS01180 PF01081 KDPG and KHG aldolase DDJ96_RS01190 PF04962 KduI/IolB family DDJ96_RS01200 PF01070 FMN-dependent dehydrogenase DDJ96_RS01205 PF08544 GHMP kinases C terminal DDJ96_RS01205 PF00288 GHMP kinases N terminal domain DDJ96_RS01215 PF00288 GHMP kinases N terminal domain DDJ96_RS01215 PF08544 GHMP kinases C terminal DDJ96_RS01215 PF10509 Galactokinase galactose-binding signature DDJ96_RS01220 PF01712 Deoxynucleoside kinase DDJ96_RS01225 PF18416 N-acetylglucosamine binding protein domain 2 DDJ96_RS01225 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DDJ96_RS01230 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DDJ96_RS01230 PF18416 N-acetylglucosamine binding protein domain 2 DDJ96_RS01235 PF00707 Translation initiation factor IF-3, C-terminal domain DDJ96_RS01235 PF05198 Translation initiation factor IF-3, N-terminal domain DDJ96_RS01240 PF01632 Ribosomal protein L35 DDJ96_RS01245 PF00453 Ribosomal protein L20 DDJ96_RS01255 PF01968 Hydantoinase/oxoprolinase DDJ96_RS01255 PF05378 Hydantoinase/oxoprolinase N-terminal region DDJ96_RS01270 PF03061 Thioesterase superfamily DDJ96_RS01275 PF01256 Carbohydrate kinase DDJ96_RS01280 PF01546 Peptidase family M20/M25/M40 DDJ96_RS01285 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS01285 PF07702 UTRA domain DDJ96_RS01290 PF02378 Phosphotransferase system, EIIC DDJ96_RS01295 PF00232 Glycosyl hydrolase family 1 DDJ96_RS01310 PF08000 Bacterial PH domain DDJ96_RS01315 PF00171 Aldehyde dehydrogenase family DDJ96_RS01330 PF00535 Glycosyl transferase family 2 DDJ96_RS01340 PF05343 M42 glutamyl aminopeptidase DDJ96_RS01345 PF00085 Thioredoxin DDJ96_RS01350 PF00582 Universal stress protein family DDJ96_RS01360 PF01588 Putative tRNA binding domain DDJ96_RS01360 PF14794 Domain of unknown function (DUF4479) DDJ96_RS01365 PF13180 PDZ domain DDJ96_RS01370 PF02590 Predicted SPOUT methyltransferase DDJ96_RS01400 PF00375 Sodium:dicarboxylate symporter family DDJ96_RS01405 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS01405 PF05043 Mga helix-turn-helix domain DDJ96_RS01405 PF00874 PRD domain DDJ96_RS01405 PF08279 HTH domain DDJ96_RS01415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS01420 PF03611 PTS system sugar-specific permease component DDJ96_RS01425 PF13580 SIS domain DDJ96_RS01445 PF03611 PTS system sugar-specific permease component DDJ96_RS01455 PF01116 Fructose-bisphosphate aldolase class-II DDJ96_RS01475 PF06545 Protein of unknown function (DUF1116) DDJ96_RS01485 PF07690 Major Facilitator Superfamily DDJ96_RS01490 PF00696 Amino acid kinase family DDJ96_RS01495 PF00375 Sodium:dicarboxylate symporter family DDJ96_RS01500 PF02378 Phosphotransferase system, EIIC DDJ96_RS01500 PF00367 phosphotransferase system, EIIB DDJ96_RS01500 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDJ96_RS01505 PF00232 Glycosyl hydrolase family 1 DDJ96_RS01510 PF00874 PRD domain DDJ96_RS01510 PF03123 CAT RNA binding domain DDJ96_RS01515 PF08546 Ketopantoate reductase PanE/ApbA C terminal DDJ96_RS01515 PF02558 Ketopantoate reductase PanE/ApbA DDJ96_RS01525 PF01416 tRNA pseudouridine synthase DDJ96_RS01530 PF01625 Peptide methionine sulfoxide reductase DDJ96_RS01535 PF00248 Aldo/keto reductase family DDJ96_RS01540 PF10502 Signal peptidase, peptidase S26 DDJ96_RS01545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS01550 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DDJ96_RS01555 PF02378 Phosphotransferase system, EIIC DDJ96_RS01580 PF08240 Alcohol dehydrogenase GroES-like domain DDJ96_RS01580 PF13823 Alcohol dehydrogenase GroES-associated DDJ96_RS01580 PF00107 Zinc-binding dehydrogenase DDJ96_RS01590 PF06100 MCRA family DDJ96_RS01605 PF01867 CRISPR associated protein Cas1 DDJ96_RS01610 PF09827 CRISPR associated protein Cas2 DDJ96_RS01615 PF09711 CRISPR-associated protein (Cas_Csn2) DDJ96_RS01640 PF00282 Pyridoxal-dependent decarboxylase conserved domain DDJ96_RS01650 PF00690 Cation transporter/ATPase, N-terminus DDJ96_RS01650 PF00689 Cation transporting ATPase, C-terminus DDJ96_RS01665 PF01047 MarR family DDJ96_RS01670 PF00583 Acetyltransferase (GNAT) family DDJ96_RS01690 PF00860 Permease family DDJ96_RS01745 PF00313 'Cold-shock' DNA-binding domain DDJ96_RS01755 PF00239 Resolvase, N terminal domain DDJ96_RS01755 PF02796 Helix-turn-helix domain of resolvase DDJ96_RS01760 PF00128 Alpha amylase, catalytic domain DDJ96_RS01760 PF16657 Maltogenic Amylase, C-terminal domain DDJ96_RS01780 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDJ96_RS01790 PF00248 Aldo/keto reductase family DDJ96_RS01800 PF02687 FtsX-like permease family DDJ96_RS01800 PF12704 MacB-like periplasmic core domain DDJ96_RS01805 PF00005 ABC transporter DDJ96_RS01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS01815 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS01820 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS01820 PF00072 Response regulator receiver domain DDJ96_RS01825 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS01825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDJ96_RS01835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDJ96_RS01835 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDJ96_RS01840 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DDJ96_RS01840 PF01266 FAD dependent oxidoreductase DDJ96_RS01845 PF00230 Major intrinsic protein DDJ96_RS01850 PF00465 Iron-containing alcohol dehydrogenase DDJ96_RS01860 PF00596 Class II Aldolase and Adducin N-terminal domain DDJ96_RS01865 PF06134 L-rhamnose isomerase (RhaA) DDJ96_RS01870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDJ96_RS01870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDJ96_RS01880 PF12833 Helix-turn-helix domain DDJ96_RS01890 PF00488 MutS domain V DDJ96_RS01890 PF01713 Smr domain DDJ96_RS01895 PF01066 CDP-alcohol phosphatidyltransferase DDJ96_RS01905 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS01915 PF02583 Metal-sensitive transcriptional repressor DDJ96_RS01920 PF00581 Rhodanese-like domain DDJ96_RS01925 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDJ96_RS01925 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS01935 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDJ96_RS01935 PF00367 phosphotransferase system, EIIB DDJ96_RS01935 PF02378 Phosphotransferase system, EIIC DDJ96_RS01940 PF01906 Putative heavy-metal-binding DDJ96_RS01945 PF03610 PTS system fructose IIA component DDJ96_RS01950 PF02733 Dak1 domain DDJ96_RS01955 PF02734 DAK2 domain DDJ96_RS01965 PF00579 tRNA synthetases class I (W and Y) DDJ96_RS01965 PF01479 S4 domain DDJ96_RS01970 PF00282 Pyridoxal-dependent decarboxylase conserved domain DDJ96_RS01975 PF13520 Amino acid permease DDJ96_RS01980 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS01990 PF13419 Haloacid dehalogenase-like hydrolase DDJ96_RS01995 PF03633 Glycosyl hydrolase family 65, C-terminal domain DDJ96_RS01995 PF03632 Glycosyl hydrolase family 65 central catalytic domain DDJ96_RS01995 PF03636 Glycosyl hydrolase family 65, N-terminal domain DDJ96_RS02000 PF02378 Phosphotransferase system, EIIC DDJ96_RS02000 PF00367 phosphotransferase system, EIIB DDJ96_RS02000 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDJ96_RS02005 PF03372 Endonuclease/Exonuclease/phosphatase family DDJ96_RS02015 PF05870 Phenolic acid decarboxylase (PAD) DDJ96_RS02020 PF03551 Transcriptional regulator PadR-like family DDJ96_RS02020 PF10400 Virulence activator alpha C-term DDJ96_RS02030 PF07690 Major Facilitator Superfamily DDJ96_RS02050 PF02687 FtsX-like permease family DDJ96_RS02050 PF12704 MacB-like periplasmic core domain DDJ96_RS02050 PF00005 ABC transporter DDJ96_RS02055 PF00072 Response regulator receiver domain DDJ96_RS02055 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS02060 PF00672 HAMP domain DDJ96_RS02060 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS02060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS02100 PF00005 ABC transporter DDJ96_RS02115 PF01418 Helix-turn-helix domain, rpiR family DDJ96_RS02115 PF01380 SIS domain DDJ96_RS02120 PF00367 phosphotransferase system, EIIB DDJ96_RS02120 PF02378 Phosphotransferase system, EIIC DDJ96_RS02125 PF11975 Family 4 glycosyl hydrolase C-terminal domain DDJ96_RS02125 PF02056 Family 4 glycosyl hydrolase DDJ96_RS02145 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DDJ96_RS02145 PF05257 CHAP domain DDJ96_RS02150 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS02155 PF00005 ABC transporter DDJ96_RS02170 PF01594 AI-2E family transporter DDJ96_RS02175 PF00128 Alpha amylase, catalytic domain DDJ96_RS02175 PF16657 Maltogenic Amylase, C-terminal domain DDJ96_RS02180 PF01594 AI-2E family transporter DDJ96_RS02185 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DDJ96_RS02185 PF01297 Zinc-uptake complex component A periplasmic DDJ96_RS02200 PF04647 Accessory gene regulator B DDJ96_RS02210 PF00580 UvrD/REP helicase N-terminal domain DDJ96_RS02210 PF13361 UvrD-like helicase C-terminal domain DDJ96_RS02215 PF03960 ArsC family DDJ96_RS02220 PF03960 ArsC family DDJ96_RS02245 PF00255 Glutathione peroxidase DDJ96_RS02250 PF02664 S-Ribosylhomocysteinase (LuxS) DDJ96_RS02255 PF01053 Cys/Met metabolism PLP-dependent enzyme DDJ96_RS02260 PF00291 Pyridoxal-phosphate dependent enzyme DDJ96_RS02265 PF08207 Elongation factor P (EF-P) KOW-like domain DDJ96_RS02265 PF09285 Elongation factor P, C-terminal DDJ96_RS02265 PF01132 Elongation factor P (EF-P) OB domain DDJ96_RS02295 PF03006 Haemolysin-III related DDJ96_RS02300 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DDJ96_RS02300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DDJ96_RS02305 PF01678 Diaminopimelate epimerase DDJ96_RS02310 PF00701 Dihydrodipicolinate synthetase family DDJ96_RS02315 PF01113 Dihydrodipicolinate reductase, N-terminus DDJ96_RS02315 PF05173 Dihydrodipicolinate reductase, C-terminus DDJ96_RS02320 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal DDJ96_RS02320 PF00132 Bacterial transferase hexapeptide (six repeats) DDJ96_RS02320 PF14602 Hexapeptide repeat of succinyl-transferase DDJ96_RS02325 PF02774 Semialdehyde dehydrogenase, dimerisation domain DDJ96_RS02325 PF01118 Semialdehyde dehydrogenase, NAD binding domain DDJ96_RS02330 PF13840 ACT domain DDJ96_RS02330 PF00696 Amino acid kinase family DDJ96_RS02335 PF07687 Peptidase dimerisation domain DDJ96_RS02335 PF01546 Peptidase family M20/M25/M40 DDJ96_RS02340 PF00155 Aminotransferase class I and II DDJ96_RS02345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDJ96_RS02345 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS02365 PF00294 pfkB family carbohydrate kinase DDJ96_RS02370 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS02370 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS02375 PF00391 PEP-utilising enzyme, mobile domain DDJ96_RS02375 PF05524 PEP-utilising enzyme, N-terminal DDJ96_RS02375 PF00381 PTS HPr component phosphorylation site DDJ96_RS02375 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS02375 PF02896 PEP-utilising enzyme, TIM barrel domain DDJ96_RS02380 PF01791 DeoC/LacD family aldolase DDJ96_RS02385 PF07702 UTRA domain DDJ96_RS02385 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS02390 PF01380 SIS domain DDJ96_RS02395 PF01791 DeoC/LacD family aldolase DDJ96_RS02400 PF03610 PTS system fructose IIA component DDJ96_RS02400 PF03830 PTS system sorbose subfamily IIB component DDJ96_RS02405 PF03609 PTS system sorbose-specific iic component DDJ96_RS02410 PF03613 PTS system mannose/fructose/sorbose family IID component DDJ96_RS02420 PF00232 Glycosyl hydrolase family 1 DDJ96_RS02435 PF13350 Tyrosine phosphatase family DDJ96_RS02450 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS02450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDJ96_RS02455 PF00171 Aldehyde dehydrogenase family DDJ96_RS02465 PF05043 Mga helix-turn-helix domain DDJ96_RS02465 PF08280 M protein trans-acting positive regulator (MGA) HTH domain DDJ96_RS02490 PF13091 PLD-like domain DDJ96_RS02490 PF13396 Phospholipase_D-nuclease N-terminal DDJ96_RS02495 PF01593 Flavin containing amine oxidoreductase DDJ96_RS02500 PF00535 Glycosyl transferase family 2 DDJ96_RS02520 PF04542 Sigma-70 region 2 DDJ96_RS02520 PF08281 Sigma-70, region 4 DDJ96_RS02525 PF11738 Protein of unknown function (DUF3298) DDJ96_RS02525 PF13739 Deacetylase PdaC DDJ96_RS02540 PF00817 impB/mucB/samB family DDJ96_RS02540 PF11799 impB/mucB/samB family C-terminal domain DDJ96_RS02540 PF11798 IMS family HHH motif DDJ96_RS02545 PF18152 DAHP synthase ferredoxin-like domain DDJ96_RS02545 PF00793 DAHP synthetase I family DDJ96_RS02550 PF01761 3-dehydroquinate synthase DDJ96_RS02555 PF01264 Chorismate synthase DDJ96_RS02560 PF02153 Prephenate dehydrogenase DDJ96_RS02565 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDJ96_RS02570 PF01202 Shikimate kinase DDJ96_RS02575 PF00800 Prephenate dehydratase DDJ96_RS02590 PF01965 DJ-1/PfpI family DDJ96_RS02595 PF08544 GHMP kinases C terminal DDJ96_RS02595 PF00288 GHMP kinases N terminal domain DDJ96_RS02595 PF10509 Galactokinase galactose-binding signature DDJ96_RS02600 PF01263 Aldose 1-epimerase DDJ96_RS02605 PF12833 Helix-turn-helix domain DDJ96_RS02605 PF02311 AraC-like ligand binding domain DDJ96_RS02610 PF02525 Flavodoxin-like fold DDJ96_RS02620 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS02620 PF07702 UTRA domain DDJ96_RS02640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDJ96_RS02640 PF13378 Enolase C-terminal domain-like DDJ96_RS02645 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDJ96_RS02645 PF00367 phosphotransferase system, EIIB DDJ96_RS02645 PF02378 Phosphotransferase system, EIIC DDJ96_RS02660 PF00107 Zinc-binding dehydrogenase DDJ96_RS02660 PF08240 Alcohol dehydrogenase GroES-like domain DDJ96_RS02665 PF00756 Putative esterase DDJ96_RS02690 PF06458 MucBP domain DDJ96_RS02720 PF05043 Mga helix-turn-helix domain DDJ96_RS02720 PF08270 M protein trans-acting positive regulator (MGA) PRD domain DDJ96_RS02720 PF08280 M protein trans-acting positive regulator (MGA) HTH domain DDJ96_RS02760 PF04237 YjbR DDJ96_RS02770 PF12323 Helix-turn-helix domain DDJ96_RS02770 PF01385 Probable transposase DDJ96_RS02770 PF07282 Putative transposase DNA-binding domain DDJ96_RS02780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDJ96_RS02785 PF00005 ABC transporter DDJ96_RS02790 PF12704 MacB-like periplasmic core domain DDJ96_RS02790 PF02687 FtsX-like permease family DDJ96_RS02795 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS02795 PF00072 Response regulator receiver domain DDJ96_RS02800 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS02800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS02800 PF00672 HAMP domain DDJ96_RS02805 PF00324 Amino acid permease DDJ96_RS02810 PF00005 ABC transporter DDJ96_RS02815 PF00950 ABC 3 transport family DDJ96_RS02820 PF01297 Zinc-uptake complex component A periplasmic DDJ96_RS02830 PF08331 Domain of unknown function (DUF1730) DDJ96_RS02835 PF01476 LysM domain DDJ96_RS02835 PF04972 BON domain DDJ96_RS02840 PF01266 FAD dependent oxidoreductase DDJ96_RS02845 PF07690 Major Facilitator Superfamily DDJ96_RS02855 PF01316 Arginine repressor, DNA binding domain DDJ96_RS02855 PF02863 Arginine repressor, C-terminal domain DDJ96_RS02865 PF05067 Manganese containing catalase DDJ96_RS02870 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS02870 PF00072 Response regulator receiver domain DDJ96_RS02875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS02880 PF06800 Sugar transport protein DDJ96_RS02885 PF13520 Amino acid permease DDJ96_RS02890 PF05816 Toxic anion resistance protein (TelA) DDJ96_RS02900 PF00293 NUDIX domain DDJ96_RS02910 PF01048 Phosphorylase superfamily DDJ96_RS02915 PF00857 Isochorismatase family DDJ96_RS02930 PF05649 Peptidase family M13 DDJ96_RS02930 PF01431 Peptidase family M13 DDJ96_RS02940 PF14572 Phosphoribosyl synthetase-associated domain DDJ96_RS02940 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DDJ96_RS02945 PF00266 Aminotransferase class-V DDJ96_RS02960 PF07690 Major Facilitator Superfamily DDJ96_RS03035 PF07690 Major Facilitator Superfamily DDJ96_RS03050 PF01751 Toprim domain DDJ96_RS03050 PF01131 DNA topoisomerase DDJ96_RS03065 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS03070 PF00005 ABC transporter DDJ96_RS03075 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDJ96_RS03080 PF00232 Glycosyl hydrolase family 1 DDJ96_RS03090 PF09397 Ftsk gamma domain DDJ96_RS03090 PF01580 FtsK/SpoIIIE family DDJ96_RS03090 PF17854 FtsK alpha domain DDJ96_RS03105 PF04055 Radical SAM superfamily DDJ96_RS03110 PF00583 Acetyltransferase (GNAT) family DDJ96_RS03115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DDJ96_RS03125 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS03130 PF12911 N-terminal TM domain of oligopeptide transport permease C DDJ96_RS03130 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS03135 PF00005 ABC transporter DDJ96_RS03135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDJ96_RS03140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DDJ96_RS03140 PF00005 ABC transporter DDJ96_RS03145 PF01385 Probable transposase DDJ96_RS03145 PF12323 Helix-turn-helix domain DDJ96_RS03145 PF07282 Putative transposase DNA-binding domain DDJ96_RS03165 PF01797 Transposase IS200 like DDJ96_RS03180 PF08264 Anticodon-binding domain of tRNA DDJ96_RS03180 PF09334 tRNA synthetases class I (M) DDJ96_RS03180 PF01588 Putative tRNA binding domain DDJ96_RS03185 PF12728 Helix-turn-helix domain DDJ96_RS03185 PF02661 Fic/DOC family DDJ96_RS03195 PF13520 Amino acid permease DDJ96_RS03200 PF01026 TatD related DNase DDJ96_RS03205 PF13331 Domain of unknown function (DUF4093) DDJ96_RS03205 PF01751 Toprim domain DDJ96_RS03210 PF00398 Ribosomal RNA adenine dimethylase DDJ96_RS03220 PF00005 ABC transporter DDJ96_RS03220 PF17912 MalK OB fold domain DDJ96_RS03220 PF03459 TOBE domain DDJ96_RS03235 PF02142 MGS-like domain DDJ96_RS03245 PF00664 ABC transporter transmembrane region DDJ96_RS03245 PF00005 ABC transporter DDJ96_RS03250 PF00005 ABC transporter DDJ96_RS03250 PF00664 ABC transporter transmembrane region DDJ96_RS03265 PF00704 Glycosyl hydrolases family 18 DDJ96_RS03270 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DDJ96_RS03270 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DDJ96_RS03275 PF00483 Nucleotidyl transferase DDJ96_RS03285 PF13580 SIS domain DDJ96_RS03290 PF03606 C4-dicarboxylate anaerobic carrier DDJ96_RS03305 PF00005 ABC transporter DDJ96_RS03310 PF12704 MacB-like periplasmic core domain DDJ96_RS03310 PF02687 FtsX-like permease family DDJ96_RS03315 PF00753 Metallo-beta-lactamase superfamily DDJ96_RS03315 PF17770 Ribonuclease J C-terminal domain DDJ96_RS03315 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DDJ96_RS03325 PF12706 Beta-lactamase superfamily domain DDJ96_RS03330 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS03330 PF03061 Thioesterase superfamily DDJ96_RS03330 PF07085 DRTGG domain DDJ96_RS03330 PF00571 CBS domain DDJ96_RS03335 PF02272 DHHA1 domain DDJ96_RS03335 PF01368 DHH family DDJ96_RS03340 PF08274 PhnA Zinc-Ribbon DDJ96_RS03340 PF03831 PhnA domain DDJ96_RS03345 PF04298 Putative neutral zinc metallopeptidase DDJ96_RS03365 PF13556 PucR C-terminal helix-turn-helix domain DDJ96_RS03370 PF14437 MafB19-like deaminase DDJ96_RS03380 PF02872 5'-nucleotidase, C-terminal domain DDJ96_RS03385 PF06265 Protein of unknown function (DUF1027) DDJ96_RS03390 PF13344 Haloacid dehalogenase-like hydrolase DDJ96_RS03400 PF04608 Phosphatidylglycerophosphatase A DDJ96_RS03405 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS03415 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DDJ96_RS03420 PF00155 Aminotransferase class I and II DDJ96_RS03425 PF00575 S1 RNA binding domain DDJ96_RS03470 PF03051 Peptidase C1-like family DDJ96_RS03475 PF03881 Fructosamine kinase DDJ96_RS03485 PF00710 Asparaginase, N-terminal DDJ96_RS03485 PF17763 Glutaminase/Asparaginase C-terminal domain DDJ96_RS03490 PF01904 Protein of unknown function DUF72 DDJ96_RS03505 PF06160 Septation ring formation regulator, EzrA DDJ96_RS03510 PF00266 Aminotransferase class-V DDJ96_RS03515 PF02568 Thiamine biosynthesis protein (ThiI) DDJ96_RS03515 PF02926 THUMP domain DDJ96_RS03520 PF02629 CoA binding domain DDJ96_RS03520 PF06971 Putative DNA-binding protein N-terminus DDJ96_RS03525 PF08264 Anticodon-binding domain of tRNA DDJ96_RS03525 PF10458 Valyl tRNA synthetase tRNA binding arm DDJ96_RS03525 PF00133 tRNA synthetases class I (I, L, M and V) DDJ96_RS03530 PF08245 Mur ligase middle domain DDJ96_RS03530 PF02875 Mur ligase family, glutamate ligase domain DDJ96_RS03535 PF13419 Haloacid dehalogenase-like hydrolase DDJ96_RS03540 PF04002 RadC-like JAB domain DDJ96_RS03545 PF00313 'Cold-shock' DNA-binding domain DDJ96_RS03550 PF00753 Metallo-beta-lactamase superfamily DDJ96_RS03550 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DDJ96_RS03550 PF17770 Ribonuclease J C-terminal domain DDJ96_RS03555 PF07288 Protein of unknown function (DUF1447) DDJ96_RS03560 PF00005 ABC transporter DDJ96_RS03560 PF00664 ABC transporter transmembrane region DDJ96_RS03565 PF00664 ABC transporter transmembrane region DDJ96_RS03565 PF00005 ABC transporter DDJ96_RS03570 PF00132 Bacterial transferase hexapeptide (six repeats) DDJ96_RS03575 PF00574 Clp protease DDJ96_RS03585 PF03009 Glycerophosphoryl diester phosphodiesterase family DDJ96_RS03595 PF01926 50S ribosome-binding GTPase DDJ96_RS03595 PF16360 GTP-binding GTPase Middle Region DDJ96_RS03595 PF13167 GTP-binding GTPase N-terminal DDJ96_RS03600 PF13411 MerR HTH family regulatory protein DDJ96_RS03605 PF00120 Glutamine synthetase, catalytic domain DDJ96_RS03605 PF03951 Glutamine synthetase, beta-Grasp domain DDJ96_RS03615 PF00117 Glutamine amidotransferase class-I DDJ96_RS03615 PF06418 CTP synthase N-terminus DDJ96_RS03620 PF01116 Fructose-bisphosphate aldolase class-II DDJ96_RS03625 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDJ96_RS03630 PF07497 Rho termination factor, RNA-binding domain DDJ96_RS03630 PF07498 Rho termination factor, N-terminal domain DDJ96_RS03630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDJ96_RS03635 PF01197 Ribosomal protein L31 DDJ96_RS03640 PF02011 Glycosyl hydrolase family 48 DDJ96_RS03640 PF00041 Fibronectin type III domain DDJ96_RS03640 PF00553 Cellulose binding domain DDJ96_RS03645 PF02378 Phosphotransferase system, EIIC DDJ96_RS03670 PF12169 DNA polymerase III subunits gamma and tau domain III DDJ96_RS03675 PF02575 YbaB/EbfC DNA-binding family DDJ96_RS03680 PF02132 RecR protein DDJ96_RS03680 PF13662 Toprim domain DDJ96_RS03685 PF02223 Thymidylate kinase DDJ96_RS03690 PF06153 Cyclic-di-AMP receptor DDJ96_RS03695 PF09115 DNA polymerase III, delta subunit, C terminal DDJ96_RS03700 PF04468 PSP1 C-terminal conserved region DDJ96_RS03705 PF06156 Initiation control protein YabA DDJ96_RS03710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DDJ96_RS03725 PF00817 impB/mucB/samB family DDJ96_RS03725 PF11798 IMS family HHH motif DDJ96_RS03725 PF11799 impB/mucB/samB family C-terminal domain DDJ96_RS03735 PF03477 ATP cone domain DDJ96_RS03735 PF13597 Anaerobic ribonucleoside-triphosphate reductase DDJ96_RS03740 PF00005 ABC transporter DDJ96_RS03745 PF02687 FtsX-like permease family DDJ96_RS03755 PF00501 AMP-binding enzyme DDJ96_RS03755 PF13193 AMP-binding enzyme C-terminal domain DDJ96_RS03760 PF03062 MBOAT, membrane-bound O-acyltransferase family DDJ96_RS03765 PF00550 Phosphopantetheine attachment site DDJ96_RS03770 PF04914 DltD protein DDJ96_RS03775 PF05343 M42 glutamyl aminopeptidase DDJ96_RS03785 PF12706 Beta-lactamase superfamily domain DDJ96_RS03790 PF10437 Bacterial lipoate protein ligase C-terminus DDJ96_RS03790 PF03099 Biotin/lipoate A/B protein ligase family DDJ96_RS03840 PF06993 Protein of unknown function (DUF1304) DDJ96_RS03845 PF01740 STAS domain DDJ96_RS03845 PF00916 Sulfate permease family DDJ96_RS03850 PF13411 MerR HTH family regulatory protein DDJ96_RS03860 PF00829 Ribosomal prokaryotic L21 protein DDJ96_RS03870 PF01016 Ribosomal L27 protein DDJ96_RS03875 PF03610 PTS system fructose IIA component DDJ96_RS03875 PF00158 Sigma-54 interaction domain DDJ96_RS03875 PF00874 PRD domain DDJ96_RS03880 PF03610 PTS system fructose IIA component DDJ96_RS03880 PF03830 PTS system sorbose subfamily IIB component DDJ96_RS03885 PF03610 PTS system fructose IIA component DDJ96_RS03885 PF03830 PTS system sorbose subfamily IIB component DDJ96_RS03890 PF03609 PTS system sorbose-specific iic component DDJ96_RS03895 PF03613 PTS system mannose/fructose/sorbose family IID component DDJ96_RS03905 PF04226 Transglycosylase associated protein DDJ96_RS03910 PF01321 Creatinase/Prolidase N-terminal domain DDJ96_RS03910 PF00557 Metallopeptidase family M24 DDJ96_RS03915 PF03780 Asp23 family, cell envelope-related function DDJ96_RS03920 PF01029 NusB family DDJ96_RS03925 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DDJ96_RS03925 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DDJ96_RS03930 PF02601 Exonuclease VII, large subunit DDJ96_RS03930 PF13742 OB-fold nucleic acid binding domain DDJ96_RS03935 PF02609 Exonuclease VII small subunit DDJ96_RS03940 PF00348 Polyprenyl synthetase DDJ96_RS03945 PF01479 S4 domain DDJ96_RS03945 PF01728 FtsJ-like methyltransferase DDJ96_RS03950 PF02863 Arginine repressor, C-terminal domain DDJ96_RS03950 PF01316 Arginine repressor, DNA binding domain DDJ96_RS03955 PF13476 AAA domain DDJ96_RS03995 PF02381 MraZ protein, putative antitoxin-like DDJ96_RS04000 PF01795 MraW methylase family DDJ96_RS04010 PF03717 Penicillin-binding Protein dimerisation domain DDJ96_RS04010 PF03793 PASTA domain DDJ96_RS04010 PF00905 Penicillin binding protein transpeptidase domain DDJ96_RS04015 PF00953 Glycosyl transferase family 4 DDJ96_RS04015 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DDJ96_RS04020 PF02875 Mur ligase family, glutamate ligase domain DDJ96_RS04020 PF08245 Mur ligase middle domain DDJ96_RS04025 PF04101 Glycosyltransferase family 28 C-terminal domain DDJ96_RS04025 PF03033 Glycosyltransferase family 28 N-terminal domain DDJ96_RS04030 PF03799 Cell division protein FtsQ DDJ96_RS04030 PF08478 POTRA domain, FtsQ-type DDJ96_RS04035 PF02491 SHS2 domain inserted in FTSA DDJ96_RS04035 PF11983 Membrane-attachment and polymerisation-promoting switch DDJ96_RS04040 PF00091 Tubulin/FtsZ family, GTPase domain DDJ96_RS04040 PF12327 FtsZ family, C-terminal domain DDJ96_RS04045 PF01168 Alanine racemase, N-terminal domain DDJ96_RS04050 PF04472 Cell division protein SepF DDJ96_RS04060 PF17774 Putative RNA-binding domain in YlmH DDJ96_RS04060 PF01479 S4 domain DDJ96_RS04065 PF05103 DivIVA protein DDJ96_RS04070 PF08264 Anticodon-binding domain of tRNA DDJ96_RS04070 PF00133 tRNA synthetases class I (I, L, M and V) DDJ96_RS04070 PF06827 Zinc finger found in FPG and IleRS DDJ96_RS04080 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DDJ96_RS04080 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DDJ96_RS04085 PF02742 Iron dependent repressor, metal binding and dimerisation domain DDJ96_RS04085 PF00950 ABC 3 transport family DDJ96_RS04095 PF03749 Sugar fermentation stimulation protein RE domain DDJ96_RS04095 PF17746 SfsA N-terminal OB domain DDJ96_RS04100 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDJ96_RS04105 PF00271 Helicase conserved C-terminal domain DDJ96_RS04105 PF00270 DEAD/DEAH box helicase DDJ96_RS04110 PF03610 PTS system fructose IIA component DDJ96_RS04110 PF00874 PRD domain DDJ96_RS04110 PF00158 Sigma-54 interaction domain DDJ96_RS04115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS04120 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DDJ96_RS04125 PF02378 Phosphotransferase system, EIIC DDJ96_RS04160 PF02073 Thermophilic metalloprotease (M29) DDJ96_RS04170 PF00258 Flavodoxin DDJ96_RS04175 PF00557 Metallopeptidase family M24 DDJ96_RS04180 PF03631 Virulence factor BrkB DDJ96_RS04185 PF00953 Glycosyl transferase family 4 DDJ96_RS04200 PF00535 Glycosyl transferase family 2 DDJ96_RS04205 PF00483 Nucleotidyl transferase DDJ96_RS04210 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase DDJ96_RS04215 PF16363 GDP-mannose 4,6 dehydratase DDJ96_RS04220 PF04321 RmlD substrate binding domain DDJ96_RS04235 PF01061 ABC-2 type transporter DDJ96_RS04240 PF00005 ABC transporter DDJ96_RS04240 PF08239 Bacterial SH3 domain DDJ96_RS04250 PF00535 Glycosyl transferase family 2 DDJ96_RS04255 PF02397 Bacterial sugar transferase DDJ96_RS04260 PF00535 Glycosyl transferase family 2 DDJ96_RS04265 PF04991 LicD family DDJ96_RS04270 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DDJ96_RS04280 PF00535 Glycosyl transferase family 2 DDJ96_RS04280 PF01501 Glycosyl transferase family 8 DDJ96_RS04290 PF04991 LicD family DDJ96_RS04305 PF01370 NAD dependent epimerase/dehydratase family DDJ96_RS04315 PF02618 YceG-like family DDJ96_RS04320 PF03449 Transcription elongation factor, N-terminal DDJ96_RS04320 PF01272 Transcription elongation factor, GreA/GreB, C-term DDJ96_RS04330 PF00672 HAMP domain DDJ96_RS04330 PF07730 Histidine kinase DDJ96_RS04330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS04335 PF00196 Bacterial regulatory proteins, luxR family DDJ96_RS04335 PF00072 Response regulator receiver domain DDJ96_RS04345 PF03448 MgtE intracellular N domain DDJ96_RS04345 PF01769 Divalent cation transporter DDJ96_RS04345 PF00571 CBS domain DDJ96_RS04350 PF02080 TrkA-C domain DDJ96_RS04350 PF02254 TrkA-N domain DDJ96_RS04355 PF01521 Iron-sulphur cluster biosynthesis DDJ96_RS04360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDJ96_RS04360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDJ96_RS04370 PF04138 GtrA-like protein DDJ96_RS04375 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DDJ96_RS04375 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DDJ96_RS04380 PF00313 'Cold-shock' DNA-binding domain DDJ96_RS04405 PF02875 Mur ligase family, glutamate ligase domain DDJ96_RS04405 PF01225 Mur ligase family, catalytic domain DDJ96_RS04405 PF08245 Mur ligase middle domain DDJ96_RS04410 PF03816 Cell envelope-related transcriptional attenuator domain DDJ96_RS04420 PF03073 TspO/MBR family DDJ96_RS04430 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DDJ96_RS04440 PF01938 TRAM domain DDJ96_RS04440 PF05958 tRNA (Uracil-5-)-methyltransferase DDJ96_RS04445 PF02631 RecX family DDJ96_RS04450 PF14815 NUDIX domain DDJ96_RS04450 PF00730 HhH-GPD superfamily base excision DNA repair protein DDJ96_RS04455 PF04167 Protein of unknown function (DUF402) DDJ96_RS04460 PF13673 Acetyltransferase (GNAT) domain DDJ96_RS04465 PF01594 AI-2E family transporter DDJ96_RS04470 PF03471 Transporter associated domain DDJ96_RS04470 PF01595 Cyclin M transmembrane N-terminal domain DDJ96_RS04470 PF00571 CBS domain DDJ96_RS04475 PF03144 Elongation factor Tu domain 2 DDJ96_RS04475 PF16658 Class II release factor RF3, C-terminal domain DDJ96_RS04475 PF00009 Elongation factor Tu GTP binding domain DDJ96_RS04490 PF17871 AAA lid domain DDJ96_RS04490 PF10431 C-terminal, D2-small domain, of ClpB protein DDJ96_RS04490 PF07724 AAA domain (Cdc48 subfamily) DDJ96_RS04490 PF00004 ATPase family associated with various cellular activities (AAA) DDJ96_RS04495 PF00381 PTS HPr component phosphorylation site DDJ96_RS04500 PF00391 PEP-utilising enzyme, mobile domain DDJ96_RS04500 PF02896 PEP-utilising enzyme, TIM barrel domain DDJ96_RS04500 PF05524 PEP-utilising enzyme, N-terminal DDJ96_RS04505 PF13439 Glycosyltransferase Family 4 DDJ96_RS04505 PF00534 Glycosyl transferases group 1 DDJ96_RS04510 PF13439 Glycosyltransferase Family 4 DDJ96_RS04510 PF00534 Glycosyl transferases group 1 DDJ96_RS04515 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DDJ96_RS04515 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDJ96_RS04520 PF08796 Protein of unknown function (DUF1797) DDJ96_RS04525 PF01541 GIY-YIG catalytic domain DDJ96_RS04525 PF12826 Helix-hairpin-helix motif DDJ96_RS04525 PF08459 UvrC Helix-hairpin-helix N-terminal DDJ96_RS04525 PF02151 UvrB/uvrC motif DDJ96_RS04530 PF01047 MarR family DDJ96_RS04535 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DDJ96_RS04535 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DDJ96_RS04540 PF00550 Phosphopantetheine attachment site DDJ96_RS04545 PF00698 Acyl transferase domain DDJ96_RS04555 PF00109 Beta-ketoacyl synthase, N-terminal domain DDJ96_RS04555 PF02801 Beta-ketoacyl synthase, C-terminal domain DDJ96_RS04560 PF00364 Biotin-requiring enzyme DDJ96_RS04565 PF07977 FabA-like domain DDJ96_RS04570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDJ96_RS04570 PF00289 Biotin carboxylase, N-terminal domain DDJ96_RS04570 PF02785 Biotin carboxylase C-terminal domain DDJ96_RS04575 PF01039 Carboxyl transferase domain DDJ96_RS04580 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DDJ96_RS04610 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDJ96_RS04615 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS04620 PF00005 ABC transporter DDJ96_RS04630 PF01926 50S ribosome-binding GTPase DDJ96_RS04635 PF01985 CRS1 / YhbY (CRM) domain DDJ96_RS04640 PF01467 Cytidylyltransferase-like DDJ96_RS04645 PF01966 HD domain DDJ96_RS04655 PF13649 Methyltransferase domain DDJ96_RS04660 PF05636 HIGH Nucleotidyl Transferase DDJ96_RS04665 PF01709 Transcriptional regulator DDJ96_RS04680 PF13538 UvrD-like helicase C-terminal domain DDJ96_RS04690 PF01361 Tautomerase enzyme DDJ96_RS04695 PF03129 Anticodon binding domain DDJ96_RS04695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDJ96_RS04695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDJ96_RS04695 PF02824 TGS domain DDJ96_RS04710 PF01418 Helix-turn-helix domain, rpiR family DDJ96_RS04710 PF01380 SIS domain DDJ96_RS04715 PF00905 Penicillin binding protein transpeptidase domain DDJ96_RS04715 PF03717 Penicillin-binding Protein dimerisation domain DDJ96_RS04725 PF00860 Permease family DDJ96_RS04730 PF07690 Major Facilitator Superfamily DDJ96_RS04740 PF02811 PHP domain DDJ96_RS04740 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DDJ96_RS04740 PF14579 Helix-hairpin-helix motif DDJ96_RS04740 PF07733 Bacterial DNA polymerase III alpha NTPase domain DDJ96_RS04740 PF01336 OB-fold nucleic acid binding domain DDJ96_RS04745 PF00365 Phosphofructokinase DDJ96_RS04750 PF00391 PEP-utilising enzyme, mobile domain DDJ96_RS04750 PF00224 Pyruvate kinase, barrel domain DDJ96_RS04750 PF02887 Pyruvate kinase, alpha/beta domain DDJ96_RS04755 PF03466 LysR substrate binding domain DDJ96_RS04755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDJ96_RS04770 PF01783 Ribosomal L32p protein family DDJ96_RS04775 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DDJ96_RS04775 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DDJ96_RS04780 PF00072 Response regulator receiver domain DDJ96_RS04780 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS04785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS04785 PF18719 ArlS sensor domain DDJ96_RS04785 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS04900 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS04915 PF07470 Glycosyl Hydrolase Family 88 DDJ96_RS04920 PF01547 Bacterial extracellular solute-binding protein DDJ96_RS04925 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS04930 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS04980 PF01738 Dienelactone hydrolase family DDJ96_RS04985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDJ96_RS04990 PF07702 UTRA domain DDJ96_RS04990 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS04995 PF02378 Phosphotransferase system, EIIC DDJ96_RS05000 PF00232 Glycosyl hydrolase family 1 DDJ96_RS05005 PF00582 Universal stress protein family DDJ96_RS05010 PF08543 Phosphomethylpyrimidine kinase DDJ96_RS05015 PF13091 PLD-like domain DDJ96_RS05015 PF13396 Phospholipase_D-nuclease N-terminal DDJ96_RS05020 PF00689 Cation transporting ATPase, C-terminus DDJ96_RS05020 PF00690 Cation transporter/ATPase, N-terminus DDJ96_RS05030 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal DDJ96_RS05030 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal DDJ96_RS05035 PF02803 Thiolase, C-terminal domain DDJ96_RS05035 PF00108 Thiolase, N-terminal domain DDJ96_RS05040 PF01098 Cell cycle protein DDJ96_RS05045 PF01098 Cell cycle protein DDJ96_RS05050 PF03816 Cell envelope-related transcriptional attenuator domain DDJ96_RS05065 PF00248 Aldo/keto reductase family DDJ96_RS05080 PF00535 Glycosyl transferase family 2 DDJ96_RS05080 PF07238 PilZ domain DDJ96_RS05080 PF03552 Cellulose synthase DDJ96_RS05085 PF03143 Elongation factor Tu C-terminal domain DDJ96_RS05085 PF00009 Elongation factor Tu GTP binding domain DDJ96_RS05085 PF03144 Elongation factor Tu domain 2 DDJ96_RS05090 PF02661 Fic/DOC family DDJ96_RS05095 PF03706 Lysylphosphatidylglycerol synthase TM region DDJ96_RS05095 PF09924 Uncharacterised conserved protein (DUF2156) DDJ96_RS05120 PF10410 DnaB-helicase binding domain of primase DDJ96_RS05120 PF08275 DNA primase catalytic core, N-terminal domain DDJ96_RS05120 PF01807 CHC2 zinc finger DDJ96_RS05125 PF00140 Sigma-70 factor, region 1.2 DDJ96_RS05125 PF04545 Sigma-70, region 4 DDJ96_RS05125 PF04539 Sigma-70 region 3 DDJ96_RS05125 PF04542 Sigma-70 region 2 DDJ96_RS05125 PF03979 Sigma-70 factor, region 1.1 DDJ96_RS05130 PF18708 MapZ extracellular C-terminal domain 2 DDJ96_RS05130 PF18041 MapZ extracellular domain 1 DDJ96_RS05135 PF13509 S1 domain DDJ96_RS05135 PF17783 CvfB-like winged helix domain DDJ96_RS05140 PF01475 Ferric uptake regulator family DDJ96_RS05145 PF00589 Phage integrase family DDJ96_RS05145 PF02899 Phage integrase, N-terminal SAM-like domain DDJ96_RS05155 PF02616 Segregation and condensation protein ScpA DDJ96_RS05160 PF04079 Segregation and condensation complex subunit ScpB DDJ96_RS05165 PF00849 RNA pseudouridylate synthase DDJ96_RS05165 PF01479 S4 domain DDJ96_RS05170 PF12822 ECF transporter, substrate-specific component DDJ96_RS05175 PF03606 C4-dicarboxylate anaerobic carrier DDJ96_RS05180 PF01546 Peptidase family M20/M25/M40 DDJ96_RS05200 PF00271 Helicase conserved C-terminal domain DDJ96_RS05200 PF00270 DEAD/DEAH box helicase DDJ96_RS05210 PF02224 Cytidylate kinase DDJ96_RS05215 PF00575 S1 RNA binding domain DDJ96_RS05220 PF01926 50S ribosome-binding GTPase DDJ96_RS05220 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DDJ96_RS05225 PF00216 Bacterial DNA-binding protein DDJ96_RS05240 PF08858 IDEAL domain DDJ96_RS05240 PF08864 UPF0302 domain DDJ96_RS05245 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DDJ96_RS05245 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DDJ96_RS05250 PF03819 MazG nucleotide pyrophosphohydrolase domain DDJ96_RS05255 PF13735 tRNA nucleotidyltransferase domain 2 putative DDJ96_RS05255 PF01743 Poly A polymerase head domain DDJ96_RS05255 PF12627 Probable RNA and SrmB- binding site of polymerase A DDJ96_RS05270 PF00999 Sodium/hydrogen exchanger family DDJ96_RS05275 PF16326 ABC transporter C-terminal domain DDJ96_RS05275 PF12848 ABC transporter DDJ96_RS05275 PF00005 ABC transporter DDJ96_RS05280 PF00303 Thymidylate synthase DDJ96_RS05285 PF00186 Dihydrofolate reductase DDJ96_RS05290 PF02645 Uncharacterised protein, DegV family COG1307 DDJ96_RS05295 PF13472 GDSL-like Lipase/Acylhydrolase family DDJ96_RS05300 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) DDJ96_RS05305 PF01625 Peptide methionine sulfoxide reductase DDJ96_RS05310 PF06855 YozE SAM-like fold DDJ96_RS05315 PF10502 Signal peptidase, peptidase S26 DDJ96_RS05335 PF01926 50S ribosome-binding GTPase DDJ96_RS05340 PF01351 Ribonuclease HII DDJ96_RS05345 PF18255 DNA processing protein A sterile alpha motif domain DDJ96_RS05345 PF02481 DNA recombination-mediator protein A DDJ96_RS05350 PF01396 Topoisomerase DNA binding C4 zinc finger DDJ96_RS05350 PF01751 Toprim domain DDJ96_RS05350 PF01131 DNA topoisomerase DDJ96_RS05355 PF01134 Glucose inhibited division protein A DDJ96_RS05360 PF02899 Phage integrase, N-terminal SAM-like domain DDJ96_RS05360 PF00589 Phage integrase family DDJ96_RS05365 PF00227 Proteasome subunit DDJ96_RS05370 PF00004 ATPase family associated with various cellular activities (AAA) DDJ96_RS05370 PF07724 AAA domain (Cdc48 subfamily) DDJ96_RS05370 PF10431 C-terminal, D2-small domain, of ClpB protein DDJ96_RS05375 PF08222 CodY helix-turn-helix domain DDJ96_RS05375 PF06018 CodY GAF-like domain DDJ96_RS05385 PF02660 Glycerol-3-phosphate acyltransferase DDJ96_RS05390 PF13380 CoA binding domain DDJ96_RS05395 PF00204 DNA gyrase B DDJ96_RS05395 PF00986 DNA gyrase B subunit, carboxyl terminus DDJ96_RS05395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS05395 PF01751 Toprim domain DDJ96_RS05400 PF03989 DNA gyrase C-terminal domain, beta-propeller DDJ96_RS05400 PF00521 DNA gyrase/topoisomerase IV, subunit A DDJ96_RS05405 PF02901 Pyruvate formate lyase-like DDJ96_RS05405 PF01228 Glycine radical DDJ96_RS05410 PF04055 Radical SAM superfamily DDJ96_RS05415 PF02833 DHHA2 domain DDJ96_RS05415 PF01368 DHH family DDJ96_RS05430 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DDJ96_RS05440 PF00326 Prolyl oligopeptidase family DDJ96_RS05445 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS05455 PF00107 Zinc-binding dehydrogenase DDJ96_RS05455 PF08240 Alcohol dehydrogenase GroES-like domain DDJ96_RS05460 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DDJ96_RS05460 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DDJ96_RS05470 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS05475 PF00571 CBS domain DDJ96_RS05475 PF00005 ABC transporter DDJ96_RS05505 PF05257 CHAP domain DDJ96_RS05505 PF01476 LysM domain DDJ96_RS05525 PF13408 Recombinase zinc beta ribbon domain DDJ96_RS05525 PF07508 Recombinase DDJ96_RS05525 PF00239 Resolvase, N terminal domain DDJ96_RS05540 PF01381 Helix-turn-helix DDJ96_RS05785 PF01464 Transglycosylase SLT domain DDJ96_RS05785 PF10145 Phage-related minor tail protein DDJ96_RS05785 PF01551 Peptidase family M23 DDJ96_RS05815 PF05105 Bacteriophage holin family DDJ96_RS05860 PF00155 Aminotransferase class I and II DDJ96_RS05870 PF01979 Amidohydrolase family DDJ96_RS05875 PF13411 MerR HTH family regulatory protein DDJ96_RS05880 PF00690 Cation transporter/ATPase, N-terminus DDJ96_RS05880 PF00689 Cation transporting ATPase, C-terminus DDJ96_RS05890 PF01223 DNA/RNA non-specific endonuclease DDJ96_RS05900 PF15975 Flotillin DDJ96_RS05900 PF01145 SPFH domain / Band 7 family DDJ96_RS05910 PF06081 Aromatic acid exporter family member 1 DDJ96_RS05910 PF11728 Putative aromatic acid exporter C-terminal domain DDJ96_RS05915 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDJ96_RS05915 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDJ96_RS05925 PF02557 D-alanyl-D-alanine carboxypeptidase DDJ96_RS05930 PF13457 GW (Gly-Tryp) dipeptide domain DDJ96_RS05930 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DDJ96_RS05940 PF00156 Phosphoribosyl transferase domain DDJ96_RS05945 PF00860 Permease family DDJ96_RS05955 PF00731 AIR carboxylase DDJ96_RS05960 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DDJ96_RS05960 PF02222 ATP-grasp domain DDJ96_RS05965 PF10397 Adenylosuccinate lyase C-terminus DDJ96_RS05965 PF00206 Lyase DDJ96_RS05975 PF01259 SAICAR synthetase DDJ96_RS05980 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase DDJ96_RS05990 PF00586 AIR synthase related protein, N-terminal domain DDJ96_RS05990 PF02769 AIR synthase related protein, C-terminal domain DDJ96_RS05990 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DDJ96_RS05995 PF00156 Phosphoribosyl transferase domain DDJ96_RS05995 PF13537 Glutamine amidotransferase domain DDJ96_RS06000 PF00586 AIR synthase related protein, N-terminal domain DDJ96_RS06000 PF02769 AIR synthase related protein, C-terminal domain DDJ96_RS06005 PF00551 Formyl transferase DDJ96_RS06010 PF01808 AICARFT/IMPCHase bienzyme DDJ96_RS06010 PF02142 MGS-like domain DDJ96_RS06015 PF02843 Phosphoribosylglycinamide synthetase, C domain DDJ96_RS06015 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DDJ96_RS06015 PF02844 Phosphoribosylglycinamide synthetase, N domain DDJ96_RS06020 PF00248 Aldo/keto reductase family DDJ96_RS06030 PF00478 IMP dehydrogenase / GMP reductase domain DDJ96_RS06035 PF00155 Aminotransferase class I and II DDJ96_RS06035 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS06040 PF00676 Dehydrogenase E1 component DDJ96_RS06045 PF02780 Transketolase, C-terminal domain DDJ96_RS06045 PF02779 Transketolase, pyrimidine binding domain DDJ96_RS06050 PF02817 e3 binding domain DDJ96_RS06050 PF00364 Biotin-requiring enzyme DDJ96_RS06050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DDJ96_RS06055 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS06055 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDJ96_RS06060 PF05256 Uncharacterised protein family (UPF0223) DDJ96_RS06065 PF00459 Inositol monophosphatase family DDJ96_RS06075 PF00009 Elongation factor Tu GTP binding domain DDJ96_RS06075 PF03144 Elongation factor Tu domain 2 DDJ96_RS06075 PF14492 Elongation Factor G, domain II DDJ96_RS06075 PF00679 Elongation factor G C-terminus DDJ96_RS06085 PF00570 HRDC domain DDJ96_RS06085 PF00271 Helicase conserved C-terminal domain DDJ96_RS06085 PF00270 DEAD/DEAH box helicase DDJ96_RS06085 PF16124 RecQ zinc-binding DDJ96_RS06085 PF09382 RQC domain DDJ96_RS06090 PF07408 Protein of unknown function (DUF1507) DDJ96_RS06095 PF01098 Cell cycle protein DDJ96_RS06100 PF02436 Conserved carboxylase domain DDJ96_RS06100 PF00682 HMGL-like DDJ96_RS06100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDJ96_RS06100 PF02785 Biotin carboxylase C-terminal domain DDJ96_RS06100 PF00289 Biotin carboxylase, N-terminal domain DDJ96_RS06100 PF00364 Biotin-requiring enzyme DDJ96_RS06115 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) DDJ96_RS06125 PF01467 Cytidylyltransferase-like DDJ96_RS06130 PF13180 PDZ domain DDJ96_RS06130 PF05362 Lon protease (S16) C-terminal proteolytic domain DDJ96_RS06140 PF10531 SLBB domain DDJ96_RS06145 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDJ96_RS06150 PF00753 Metallo-beta-lactamase superfamily DDJ96_RS06150 PF13567 Domain of unknown function (DUF4131) DDJ96_RS06150 PF03772 Competence protein DDJ96_RS06155 PF06144 DNA polymerase III, delta subunit DDJ96_RS06160 PF01649 Ribosomal protein S20 DDJ96_RS06170 PF04284 Protein of unknown function (DUF441) DDJ96_RS06205 PF03551 Transcriptional regulator PadR-like family DDJ96_RS06210 PF00005 ABC transporter DDJ96_RS06210 PF16326 ABC transporter C-terminal domain DDJ96_RS06210 PF12848 ABC transporter DDJ96_RS06215 PF02673 Bacitracin resistance protein BacA DDJ96_RS06225 PF00753 Metallo-beta-lactamase superfamily DDJ96_RS06230 PF13307 Helicase C-terminal domain DDJ96_RS06230 PF04851 Type III restriction enzyme, res subunit DDJ96_RS06235 PF04461 Protein of unknown function (DUF520) DDJ96_RS06240 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DDJ96_RS06240 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DDJ96_RS06245 PF01883 Iron-sulfur cluster assembly protein DDJ96_RS06280 PF01451 Low molecular weight phosphotyrosine protein phosphatase DDJ96_RS06290 PF01476 LysM domain DDJ96_RS06290 PF05257 CHAP domain DDJ96_RS06330 PF13529 Peptidase_C39 like family DDJ96_RS06350 PF00854 POT family DDJ96_RS06355 PF12705 PD-(D/E)XK nuclease superfamily DDJ96_RS06360 PF12705 PD-(D/E)XK nuclease superfamily DDJ96_RS06360 PF13361 UvrD-like helicase C-terminal domain DDJ96_RS06360 PF00580 UvrD/REP helicase N-terminal domain DDJ96_RS06365 PF01638 HxlR-like helix-turn-helix DDJ96_RS06370 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DDJ96_RS06370 PF01409 tRNA synthetases class II core domain (F) DDJ96_RS06375 PF03484 tRNA synthetase B5 domain DDJ96_RS06375 PF03483 B3/4 domain DDJ96_RS06375 PF01588 Putative tRNA binding domain DDJ96_RS06375 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DDJ96_RS06375 PF03147 Ferredoxin-fold anticodon binding domain DDJ96_RS06390 PF00579 tRNA synthetases class I (W and Y) DDJ96_RS06395 PF00005 ABC transporter DDJ96_RS06400 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDJ96_RS06405 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS06410 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS06415 PF01177 Asp/Glu/Hydantoin racemase DDJ96_RS06420 PF01138 3' exoribonuclease family, domain 1 DDJ96_RS06420 PF03725 3' exoribonuclease family, domain 2 DDJ96_RS06435 PF00924 Mechanosensitive ion channel DDJ96_RS06440 PF01063 Amino-transferase class IV DDJ96_RS06450 PF07977 FabA-like domain DDJ96_RS06455 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DDJ96_RS06470 PF01018 GTP1/OBG DDJ96_RS06470 PF01926 50S ribosome-binding GTPase DDJ96_RS06470 PF09269 Domain of unknown function (DUF1967) DDJ96_RS06480 PF00753 Metallo-beta-lactamase superfamily DDJ96_RS06480 PF12706 Beta-lactamase superfamily domain DDJ96_RS06485 PF00106 short chain dehydrogenase DDJ96_RS06495 PF02272 DHHA1 domain DDJ96_RS06495 PF01368 DHH family DDJ96_RS06495 PF17768 RecJ OB domain DDJ96_RS06495 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DDJ96_RS06500 PF00156 Phosphoribosyl transferase domain DDJ96_RS06510 PF01726 LexA DNA binding domain DDJ96_RS06510 PF00717 Peptidase S24-like DDJ96_RS06515 PF05979 Bacterial protein of unknown function (DUF896) DDJ96_RS06520 PF02779 Transketolase, pyrimidine binding domain DDJ96_RS06520 PF02780 Transketolase, C-terminal domain DDJ96_RS06520 PF00456 Transketolase, thiamine diphosphate binding domain DDJ96_RS06525 PF01476 LysM domain DDJ96_RS06525 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DDJ96_RS06535 PF00291 Pyridoxal-phosphate dependent enzyme DDJ96_RS06540 PF01475 Ferric uptake regulator family DDJ96_RS06545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDJ96_RS06545 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS06555 PF07261 Replication initiation and membrane attachment DDJ96_RS06560 PF10576 Iron-sulfur binding domain of endonuclease III DDJ96_RS06560 PF00633 Helix-hairpin-helix motif DDJ96_RS06560 PF00730 HhH-GPD superfamily base excision DNA repair protein DDJ96_RS06575 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DDJ96_RS06575 PF18416 N-acetylglucosamine binding protein domain 2 DDJ96_RS06610 PF00877 NlpC/P60 family DDJ96_RS06665 PF00912 Transglycosylase DDJ96_RS06665 PF00905 Penicillin binding protein transpeptidase domain DDJ96_RS06670 PF03838 Recombination protein U DDJ96_RS06675 PF06908 YspA SLOG family DDJ96_RS06680 PF05103 DivIVA protein DDJ96_RS06690 PF01170 Putative RNA methylase family UPF0020 DDJ96_RS06690 PF02926 THUMP domain DDJ96_RS06700 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DDJ96_RS06705 PF01966 HD domain DDJ96_RS06720 PF00270 DEAD/DEAH box helicase DDJ96_RS06720 PF00271 Helicase conserved C-terminal domain DDJ96_RS06735 PF02272 DHHA1 domain DDJ96_RS06735 PF01411 tRNA synthetases class II (A) DDJ96_RS06735 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DDJ96_RS06740 PF12822 ECF transporter, substrate-specific component DDJ96_RS06745 PF01545 Cation efflux family DDJ96_RS06745 PF16916 Dimerisation domain of Zinc Transporter DDJ96_RS06750 PF13456 Reverse transcriptase-like DDJ96_RS06755 PF17255 EbsA-like protein DDJ96_RS06760 PF00313 'Cold-shock' DNA-binding domain DDJ96_RS06765 PF01268 Formate--tetrahydrofolate ligase DDJ96_RS06805 PF01252 Signal peptidase (SPase) II DDJ96_RS06810 PF00849 RNA pseudouridylate synthase DDJ96_RS06810 PF01479 S4 domain DDJ96_RS06815 PF00156 Phosphoribosyl transferase domain DDJ96_RS06820 PF00860 Permease family DDJ96_RS06825 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDJ96_RS06825 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDJ96_RS06830 PF01979 Amidohydrolase family DDJ96_RS06835 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DDJ96_RS06835 PF00117 Glutamine amidotransferase class-I DDJ96_RS06840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DDJ96_RS06840 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DDJ96_RS06840 PF02142 MGS-like domain DDJ96_RS06845 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DDJ96_RS06845 PF00970 Oxidoreductase FAD-binding domain DDJ96_RS06850 PF01180 Dihydroorotate dehydrogenase DDJ96_RS06855 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DDJ96_RS06860 PF00156 Phosphoribosyl transferase domain DDJ96_RS06875 PF03466 LysR substrate binding domain DDJ96_RS06875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDJ96_RS06885 PF05670 NFACT protein RNA binding domain DDJ96_RS06900 PF02653 Branched-chain amino acid transport system / permease component DDJ96_RS06905 PF00005 ABC transporter DDJ96_RS06910 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DDJ96_RS06910 PF08501 Shikimate dehydrogenase substrate binding domain DDJ96_RS06915 PF03816 Cell envelope-related transcriptional attenuator domain DDJ96_RS07005 PF01131 DNA topoisomerase DDJ96_RS07005 PF01751 Toprim domain DDJ96_RS07015 PF00583 Acetyltransferase (GNAT) family DDJ96_RS07020 PF00689 Cation transporting ATPase, C-terminus DDJ96_RS07020 PF00690 Cation transporter/ATPase, N-terminus DDJ96_RS07030 PF00056 lactate/malate dehydrogenase, NAD binding domain DDJ96_RS07030 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DDJ96_RS07055 PF08533 Beta-galactosidase C-terminal domain DDJ96_RS07055 PF08532 Beta-galactosidase trimerisation domain DDJ96_RS07055 PF02449 Beta-galactosidase DDJ96_RS07060 PF16875 Glycosyl hydrolase family 36 N-terminal domain DDJ96_RS07060 PF16874 Glycosyl hydrolase family 36 C-terminal domain DDJ96_RS07070 PF02378 Phosphotransferase system, EIIC DDJ96_RS07075 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS07080 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDJ96_RS07080 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DDJ96_RS07085 PF13580 SIS domain DDJ96_RS07090 PF00300 Histidine phosphatase superfamily (branch 1) DDJ96_RS07100 PF00005 ABC transporter DDJ96_RS07125 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS07125 PF00072 Response regulator receiver domain DDJ96_RS07130 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS07130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS07135 PF13495 Phage integrase, N-terminal SAM-like domain DDJ96_RS07135 PF00589 Phage integrase family DDJ96_RS07145 PF08543 Phosphomethylpyrimidine kinase DDJ96_RS07150 PF07155 ECF-type riboflavin transporter, S component DDJ96_RS07155 PF04260 Protein of unknown function (DUF436) DDJ96_RS07160 PF00128 Alpha amylase, catalytic domain DDJ96_RS07160 PF16657 Maltogenic Amylase, C-terminal domain DDJ96_RS07175 PF02645 Uncharacterised protein, DegV family COG1307 DDJ96_RS07180 PF01943 Polysaccharide biosynthesis protein DDJ96_RS07180 PF14667 Polysaccharide biosynthesis C-terminal domain DDJ96_RS07220 PF08903 Domain of unknown function (DUF1846) DDJ96_RS07225 PF01773 Na+ dependent nucleoside transporter N-terminus DDJ96_RS07225 PF07662 Na+ dependent nucleoside transporter C-terminus DDJ96_RS07230 PF00625 Guanylate kinase DDJ96_RS07250 PF01425 Amidase DDJ96_RS07255 PF01180 Dihydroorotate dehydrogenase DDJ96_RS07275 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS07280 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS07285 PF13416 Bacterial extracellular solute-binding protein DDJ96_RS07290 PF02903 Alpha amylase, N-terminal ig-like domain DDJ96_RS07290 PF00128 Alpha amylase, catalytic domain DDJ96_RS07295 PF13378 Enolase C-terminal domain-like DDJ96_RS07295 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DDJ96_RS07300 PF12697 Alpha/beta hydrolase family DDJ96_RS07305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDJ96_RS07305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDJ96_RS07305 PF16582 Middle domain of thiamine pyrophosphate DDJ96_RS07310 PF00425 chorismate binding enzyme DDJ96_RS07315 PF13193 AMP-binding enzyme C-terminal domain DDJ96_RS07315 PF00501 AMP-binding enzyme DDJ96_RS07320 PF00378 Enoyl-CoA hydratase/isomerase DDJ96_RS07360 PF01381 Helix-turn-helix DDJ96_RS07375 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DDJ96_RS07375 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DDJ96_RS07380 PF02566 OsmC-like protein DDJ96_RS07385 PF01047 MarR family DDJ96_RS07390 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family DDJ96_RS07415 PF00999 Sodium/hydrogen exchanger family DDJ96_RS07425 PF05223 NTF2-like N-terminal transpeptidase domain DDJ96_RS07425 PF03717 Penicillin-binding Protein dimerisation domain DDJ96_RS07425 PF00905 Penicillin binding protein transpeptidase domain DDJ96_RS07430 PF03816 Cell envelope-related transcriptional attenuator domain DDJ96_RS07435 PF01613 Flavin reductase like domain DDJ96_RS07450 PF02872 5'-nucleotidase, C-terminal domain DDJ96_RS07450 PF00149 Calcineurin-like phosphoesterase DDJ96_RS07455 PF13416 Bacterial extracellular solute-binding protein DDJ96_RS07465 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS07470 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS07475 PF17912 MalK OB fold domain DDJ96_RS07475 PF00005 ABC transporter DDJ96_RS07480 PF04226 Transglycosylase associated protein DDJ96_RS07485 PF03780 Asp23 family, cell envelope-related function DDJ96_RS07505 PF04647 Accessory gene regulator B DDJ96_RS07510 PF00072 Response regulator receiver domain DDJ96_RS07510 PF04397 LytTr DNA-binding domain DDJ96_RS07525 PF13443 Cro/C1-type HTH DNA-binding domain DDJ96_RS07555 PF04226 Transglycosylase associated protein DDJ96_RS07560 PF03780 Asp23 family, cell envelope-related function DDJ96_RS07590 PF01501 Glycosyl transferase family 8 DDJ96_RS07595 PF01501 Glycosyl transferase family 8 DDJ96_RS07615 PF01381 Helix-turn-helix DDJ96_RS07625 PF00313 'Cold-shock' DNA-binding domain DDJ96_RS07630 PF03358 NADPH-dependent FMN reductase DDJ96_RS07645 PF13411 MerR HTH family regulatory protein DDJ96_RS07660 PF01783 Ribosomal L32p protein family DDJ96_RS07665 PF00253 Ribosomal protein S14p/S29e DDJ96_RS07680 PF00005 ABC transporter DDJ96_RS07690 PF00009 Elongation factor Tu GTP binding domain DDJ96_RS07690 PF03144 Elongation factor Tu domain 2 DDJ96_RS07690 PF06421 GTP-binding protein LepA C-terminus DDJ96_RS07690 PF00679 Elongation factor G C-terminus DDJ96_RS07710 PF06800 Sugar transport protein DDJ96_RS07715 PF09261 Alpha mannosidase middle domain DDJ96_RS07715 PF01074 Glycosyl hydrolases family 38 N-terminal domain DDJ96_RS07715 PF07748 Glycosyl hydrolases family 38 C-terminal domain DDJ96_RS07725 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS07730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS07735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS07735 PF05043 Mga helix-turn-helix domain DDJ96_RS07735 PF08279 HTH domain DDJ96_RS07735 PF00874 PRD domain DDJ96_RS07740 PF10431 C-terminal, D2-small domain, of ClpB protein DDJ96_RS07740 PF02861 Clp amino terminal domain, pathogenicity island component DDJ96_RS07740 PF17871 AAA lid domain DDJ96_RS07740 PF00004 ATPase family associated with various cellular activities (AAA) DDJ96_RS07740 PF07724 AAA domain (Cdc48 subfamily) DDJ96_RS07750 PF02378 Phosphotransferase system, EIIC DDJ96_RS07755 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS07760 PF01112 Asparaginase DDJ96_RS07765 PF01546 Peptidase family M20/M25/M40 DDJ96_RS07770 PF07702 UTRA domain DDJ96_RS07770 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS07790 PF00781 Diacylglycerol kinase catalytic domain DDJ96_RS07795 PF07687 Peptidase dimerisation domain DDJ96_RS07795 PF01546 Peptidase family M20/M25/M40 DDJ96_RS07800 PF01784 NIF3 (NGG1p interacting factor 3) DDJ96_RS07805 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DDJ96_RS07815 PF01695 IstB-like ATP binding protein DDJ96_RS07815 PF07319 Primosomal protein DnaI N-terminus DDJ96_RS07825 PF03477 ATP cone domain DDJ96_RS07835 PF01121 Dephospho-CoA kinase DDJ96_RS07840 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DDJ96_RS07840 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DDJ96_RS07840 PF06827 Zinc finger found in FPG and IleRS DDJ96_RS07845 PF01367 5'-3' exonuclease, C-terminal SAM fold DDJ96_RS07845 PF00476 DNA polymerase family A DDJ96_RS07845 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DDJ96_RS07850 PF01027 Inhibitor of apoptosis-promoting Bax1 DDJ96_RS07860 PF08245 Mur ligase middle domain DDJ96_RS07860 PF01225 Mur ligase family, catalytic domain DDJ96_RS07860 PF02875 Mur ligase family, glutamate ligase domain DDJ96_RS07865 PF02698 DUF218 domain DDJ96_RS07870 PF10263 SprT-like family DDJ96_RS07875 PF16921 Tex protein YqgF-like domain DDJ96_RS07875 PF09371 Tex-like protein N-terminal domain DDJ96_RS07875 PF17674 HHH domain DDJ96_RS07875 PF00575 S1 RNA binding domain DDJ96_RS07880 PF00149 Calcineurin-like phosphoesterase DDJ96_RS07885 PF00581 Rhodanese-like domain DDJ96_RS07885 PF12368 Rhodanase C-terminal DDJ96_RS07885 PF17773 UPF0176 acylphosphatase like domain DDJ96_RS07945 PF00375 Sodium:dicarboxylate symporter family DDJ96_RS07975 PF07556 Protein of unknown function (DUF1538) DDJ96_RS07985 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS07990 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS07995 PF13416 Bacterial extracellular solute-binding protein DDJ96_RS08000 PF00072 Response regulator receiver domain DDJ96_RS08000 PF12833 Helix-turn-helix domain DDJ96_RS08005 PF02743 Cache domain DDJ96_RS08005 PF00672 HAMP domain DDJ96_RS08005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS08005 PF06580 Histidine kinase DDJ96_RS08010 PF02929 Beta galactosidase small chain DDJ96_RS08015 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DDJ96_RS08015 PF02837 Glycosyl hydrolases family 2, sugar binding domain DDJ96_RS08015 PF00703 Glycosyl hydrolases family 2 DDJ96_RS08020 PF16875 Glycosyl hydrolase family 36 N-terminal domain DDJ96_RS08020 PF16874 Glycosyl hydrolase family 36 C-terminal domain DDJ96_RS08025 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS08030 PF01717 Cobalamin-independent synthase, Catalytic domain DDJ96_RS08040 PF00664 ABC transporter transmembrane region DDJ96_RS08040 PF00005 ABC transporter DDJ96_RS08045 PF00005 ABC transporter DDJ96_RS08045 PF00664 ABC transporter transmembrane region DDJ96_RS08070 PF05958 tRNA (Uracil-5-)-methyltransferase DDJ96_RS08075 PF00781 Diacylglycerol kinase catalytic domain DDJ96_RS08080 PF02934 GatB/GatE catalytic domain DDJ96_RS08080 PF02637 GatB domain DDJ96_RS08085 PF01425 Amidase DDJ96_RS08090 PF02686 Glu-tRNAGln amidotransferase C subunit DDJ96_RS08095 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DDJ96_RS08095 PF12826 Helix-hairpin-helix motif DDJ96_RS08095 PF00533 BRCA1 C Terminus (BRCT) domain DDJ96_RS08095 PF03120 NAD-dependent DNA ligase OB-fold domain DDJ96_RS08095 PF01653 NAD-dependent DNA ligase adenylation domain DDJ96_RS08100 PF13361 UvrD-like helicase C-terminal domain DDJ96_RS08100 PF00580 UvrD/REP helicase N-terminal domain DDJ96_RS08105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS08105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS08110 PF00294 pfkB family carbohydrate kinase DDJ96_RS08115 PF08220 DeoR-like helix-turn-helix domain DDJ96_RS08115 PF00455 DeoR C terminal sensor domain DDJ96_RS08125 PF01926 50S ribosome-binding GTPase DDJ96_RS08130 PF10431 C-terminal, D2-small domain, of ClpB protein DDJ96_RS08130 PF07724 AAA domain (Cdc48 subfamily) DDJ96_RS08130 PF06689 ClpX C4-type zinc finger DDJ96_RS08135 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DDJ96_RS08135 PF05697 Bacterial trigger factor protein (TF) DDJ96_RS08135 PF05698 Bacterial trigger factor protein (TF) C-terminus DDJ96_RS08145 PF06271 RDD family DDJ96_RS08150 PF01343 Peptidase family S49 DDJ96_RS08160 PF01380 SIS domain DDJ96_RS08165 PF01061 ABC-2 type transporter DDJ96_RS08170 PF00005 ABC transporter DDJ96_RS08170 PF13732 Domain of unknown function (DUF4162) DDJ96_RS08180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDJ96_RS08180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDJ96_RS08180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDJ96_RS08180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDJ96_RS08190 PF02457 DisA bacterial checkpoint controller nucleotide-binding DDJ96_RS08195 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DDJ96_RS08195 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DDJ96_RS08195 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DDJ96_RS08195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDJ96_RS08195 PF10371 Domain of unknown function DDJ96_RS08195 PF12838 4Fe-4S dicluster domain DDJ96_RS08230 PF02650 WhiA C-terminal HTH domain DDJ96_RS08230 PF14527 WhiA LAGLIDADG-like domain DDJ96_RS08230 PF10298 WhiA N-terminal LAGLIDADG-like domain DDJ96_RS08235 PF01933 Uncharacterised protein family UPF0052 DDJ96_RS08240 PF03668 P-loop ATPase protein family DDJ96_RS08245 PF01177 Asp/Glu/Hydantoin racemase DDJ96_RS08255 PF00005 ABC transporter DDJ96_RS08255 PF17755 UvrA DNA-binding domain DDJ96_RS08255 PF17760 UvrA interaction domain DDJ96_RS08260 PF04851 Type III restriction enzyme, res subunit DDJ96_RS08260 PF02151 UvrB/uvrC motif DDJ96_RS08260 PF12344 Ultra-violet resistance protein B DDJ96_RS08260 PF00271 Helicase conserved C-terminal domain DDJ96_RS08260 PF17757 UvrB interaction domain DDJ96_RS08265 PF00497 Bacterial extracellular solute-binding proteins, family 3 DDJ96_RS08270 PF00005 ABC transporter DDJ96_RS08275 PF07745 Glycosyl hydrolase family 53 DDJ96_RS08280 PF02378 Phosphotransferase system, EIIC DDJ96_RS08280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS08285 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DDJ96_RS08290 PF00232 Glycosyl hydrolase family 1 DDJ96_RS08295 PF08220 DeoR-like helix-turn-helix domain DDJ96_RS08295 PF00455 DeoR C terminal sensor domain DDJ96_RS08300 PF13419 Haloacid dehalogenase-like hydrolase DDJ96_RS08305 PF01556 DnaJ C terminal domain DDJ96_RS08305 PF00226 DnaJ domain DDJ96_RS08305 PF00684 DnaJ central domain DDJ96_RS08310 PF00012 Hsp70 protein DDJ96_RS08315 PF01025 GrpE DDJ96_RS08320 PF01628 HrcA protein C terminal domain DDJ96_RS08325 PF06969 HemN C-terminal domain DDJ96_RS08325 PF04055 Radical SAM superfamily DDJ96_RS08330 PF13276 HTH-like domain DDJ96_RS08330 PF00665 Integrase core domain DDJ96_RS08330 PF13333 Integrase core domain DDJ96_RS08335 PF13276 HTH-like domain DDJ96_RS08335 PF13333 Integrase core domain DDJ96_RS08335 PF00665 Integrase core domain DDJ96_RS08360 PF03116 NQR2, RnfD, RnfE family DDJ96_RS08365 PF10531 SLBB domain DDJ96_RS08365 PF13375 RnfC Barrel sandwich hybrid domain DDJ96_RS08365 PF13237 4Fe-4S dicluster domain DDJ96_RS08365 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit DDJ96_RS08370 PF00365 Phosphofructokinase DDJ96_RS08380 PF12728 Helix-turn-helix domain DDJ96_RS08385 PF06800 Sugar transport protein DDJ96_RS08395 PF01687 Riboflavin kinase DDJ96_RS08395 PF06574 FAD synthetase DDJ96_RS08400 PF16198 tRNA pseudouridylate synthase B C-terminal domain DDJ96_RS08400 PF01509 TruB family pseudouridylate synthase (N terminal domain) DDJ96_RS08405 PF02033 Ribosome-binding factor A DDJ96_RS08410 PF11987 Translation-initiation factor 2 DDJ96_RS08410 PF00009 Elongation factor Tu GTP binding domain DDJ96_RS08410 PF04760 Translation initiation factor IF-2, N-terminal region DDJ96_RS08415 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DDJ96_RS08420 PF04296 Protein of unknown function (DUF448) DDJ96_RS08425 PF08529 NusA N-terminal domain DDJ96_RS08425 PF00575 S1 RNA binding domain DDJ96_RS08425 PF13184 NusA-like KH domain DDJ96_RS08430 PF02576 RimP N-terminal domain DDJ96_RS08430 PF17384 RimP C-terminal SH3 domain DDJ96_RS08435 PF00929 Exonuclease DDJ96_RS08435 PF14579 Helix-hairpin-helix motif DDJ96_RS08435 PF02811 PHP domain DDJ96_RS08435 PF14480 DNA polymerase III polC-type N-terminus I DDJ96_RS08435 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DDJ96_RS08435 PF11490 DNA polymerase III polC-type N-terminus II DDJ96_RS08435 PF07733 Bacterial DNA polymerase III alpha NTPase domain DDJ96_RS08440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDJ96_RS08440 PF03129 Anticodon binding domain DDJ96_RS08440 PF04073 Aminoacyl-tRNA editing domain DDJ96_RS08445 PF17820 PDZ domain DDJ96_RS08445 PF02163 Peptidase family M50 DDJ96_RS08455 PF01255 Putative undecaprenyl diphosphate synthase DDJ96_RS08460 PF01765 Ribosome recycling factor DDJ96_RS08465 PF00696 Amino acid kinase family DDJ96_RS08470 PF00889 Elongation factor TS DDJ96_RS08475 PF00318 Ribosomal protein S2 DDJ96_RS08480 PF01316 Arginine repressor, DNA binding domain DDJ96_RS08480 PF02863 Arginine repressor, C-terminal domain DDJ96_RS08495 PF03485 Arginyl tRNA synthetase N terminal domain DDJ96_RS08495 PF05746 DALR anticodon binding domain DDJ96_RS08495 PF00750 tRNA synthetases class I (R) DDJ96_RS08500 PF00696 Amino acid kinase family DDJ96_RS08505 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DDJ96_RS08505 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DDJ96_RS08525 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DDJ96_RS08525 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DDJ96_RS08525 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DDJ96_RS08530 PF00535 Glycosyl transferase family 2 DDJ96_RS08540 PF13439 Glycosyltransferase Family 4 DDJ96_RS08540 PF00534 Glycosyl transferases group 1 DDJ96_RS08545 PF02397 Bacterial sugar transferase DDJ96_RS08550 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DDJ96_RS08560 PF02719 Polysaccharide biosynthesis protein DDJ96_RS08570 PF13614 AAA domain DDJ96_RS08575 PF02706 Chain length determinant protein DDJ96_RS08575 PF13807 G-rich domain on putative tyrosine kinase DDJ96_RS08595 PF00814 Glycoprotease family DDJ96_RS08610 PF00814 Glycoprotease family DDJ96_RS08615 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS08620 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DDJ96_RS08620 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DDJ96_RS08625 PF16363 GDP-mannose 4,6 dehydratase DDJ96_RS08640 PF00581 Rhodanese-like domain DDJ96_RS08645 PF00480 ROK family DDJ96_RS08660 PF01812 5-formyltetrahydrofolate cyclo-ligase family DDJ96_RS08670 PF04740 LXG domain of WXG superfamily DDJ96_RS08670 PF14436 Bacterial EndoU nuclease DDJ96_RS08685 PF01032 FecCD transport family DDJ96_RS08690 PF01032 FecCD transport family DDJ96_RS08695 PF00005 ABC transporter DDJ96_RS08705 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS08705 PF00072 Response regulator receiver domain DDJ96_RS08710 PF02702 Osmosensitive K+ channel His kinase sensor domain DDJ96_RS08710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS08710 PF13493 Domain of unknown function (DUF4118) DDJ96_RS08710 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS08715 PF02669 K+-transporting ATPase, c chain DDJ96_RS08725 PF03814 Potassium-transporting ATPase A subunit DDJ96_RS08730 PF00186 Dihydrofolate reductase DDJ96_RS08735 PF00471 Ribosomal protein L33 DDJ96_RS08740 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) DDJ96_RS08745 PF00733 Asparagine synthase DDJ96_RS08745 PF13537 Glutamine amidotransferase domain DDJ96_RS08765 PF00440 Bacterial regulatory proteins, tetR family DDJ96_RS08765 PF08359 YsiA-like protein, C-terminal region DDJ96_RS08780 PF09335 SNARE associated Golgi protein DDJ96_RS08785 PF03009 Glycerophosphoryl diester phosphodiesterase family DDJ96_RS08795 PF01381 Helix-turn-helix DDJ96_RS08810 PF00313 'Cold-shock' DNA-binding domain DDJ96_RS08825 PF00313 'Cold-shock' DNA-binding domain DDJ96_RS08835 PF00342 Phosphoglucose isomerase DDJ96_RS08840 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DDJ96_RS08840 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DDJ96_RS08850 PF04073 Aminoacyl-tRNA editing domain DDJ96_RS08855 PF01487 Type I 3-dehydroquinase DDJ96_RS08860 PF10672 S-adenosylmethionine-dependent methyltransferase DDJ96_RS08860 PF17785 PUA-like domain DDJ96_RS08865 PF00884 Sulfatase DDJ96_RS08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS08880 PF00672 HAMP domain DDJ96_RS08880 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS08885 PF00072 Response regulator receiver domain DDJ96_RS08885 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS08900 PF02436 Conserved carboxylase domain DDJ96_RS08900 PF00682 HMGL-like DDJ96_RS08900 PF00364 Biotin-requiring enzyme DDJ96_RS08905 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase DDJ96_RS08910 PF04223 Citrate lyase, alpha subunit (CitF) DDJ96_RS08915 PF03328 HpcH/HpaI aldolase/citrate lyase family DDJ96_RS08920 PF06857 Malonate decarboxylase delta subunit (MdcD) DDJ96_RS08925 PF08218 Citrate lyase ligase C-terminal domain DDJ96_RS08930 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit DDJ96_RS08935 PF00364 Biotin-requiring enzyme DDJ96_RS08945 PF03600 Citrate transporter DDJ96_RS08950 PF07702 UTRA domain DDJ96_RS08950 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS08955 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase DDJ96_RS08960 PF00072 Response regulator receiver domain DDJ96_RS08960 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS08970 PF03992 Antibiotic biosynthesis monooxygenase DDJ96_RS08975 PF00881 Nitroreductase family DDJ96_RS08980 PF01047 MarR family DDJ96_RS08990 PF13185 GAF domain DDJ96_RS08995 PF03306 Alpha-acetolactate decarboxylase DDJ96_RS09030 PF00205 Thiamine pyrophosphate enzyme, central domain DDJ96_RS09030 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DDJ96_RS09030 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DDJ96_RS09035 PF00583 Acetyltransferase (GNAT) family DDJ96_RS09045 PF00471 Ribosomal protein L33 DDJ96_RS09050 PF04650 YSIRK type signal peptide DDJ96_RS09050 PF00746 LPXTG cell wall anchor motif DDJ96_RS09050 PF07501 G5 domain DDJ96_RS09050 PF00728 Glycosyl hydrolase family 20, catalytic domain DDJ96_RS09060 PF08220 DeoR-like helix-turn-helix domain DDJ96_RS09060 PF00455 DeoR C terminal sensor domain DDJ96_RS09065 PF13419 Haloacid dehalogenase-like hydrolase DDJ96_RS09070 PF00266 Aminotransferase class-V DDJ96_RS09090 PF08402 TOBE domain DDJ96_RS09090 PF00005 ABC transporter DDJ96_RS09095 PF02780 Transketolase, C-terminal domain DDJ96_RS09095 PF02779 Transketolase, pyrimidine binding domain DDJ96_RS09095 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DDJ96_RS09165 PF09364 XFP N-terminal domain DDJ96_RS09165 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase DDJ96_RS09165 PF09363 XFP C-terminal domain DDJ96_RS09170 PF02610 L-arabinose isomerase DDJ96_RS09170 PF11762 L-arabinose isomerase C-terminal domain DDJ96_RS09175 PF00596 Class II Aldolase and Adducin N-terminal domain DDJ96_RS09185 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS09195 PF02653 Branched-chain amino acid transport system / permease component DDJ96_RS09200 PF00005 ABC transporter DDJ96_RS09205 PF13407 Periplasmic binding protein domain DDJ96_RS09210 PF13407 Periplasmic binding protein domain DDJ96_RS09215 PF00672 HAMP domain DDJ96_RS09215 PF02743 Cache domain DDJ96_RS09215 PF06580 Histidine kinase DDJ96_RS09215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS09220 PF00072 Response regulator receiver domain DDJ96_RS09220 PF12833 Helix-turn-helix domain DDJ96_RS09245 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS09245 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDJ96_RS09250 PF00923 Transaldolase/Fructose-6-phosphate aldolase DDJ96_RS09255 PF03829 PTS system glucitol/sorbitol-specific IIA component DDJ96_RS09260 PF07663 Sorbitol phosphotransferase enzyme II C-terminus DDJ96_RS09260 PF03612 Sorbitol phosphotransferase enzyme II N-terminus DDJ96_RS09265 PF03608 PTS system enzyme II sorbitol-specific factor DDJ96_RS09280 PF00106 short chain dehydrogenase DDJ96_RS09295 PF08543 Phosphomethylpyrimidine kinase DDJ96_RS09295 PF02581 Thiamine monophosphate synthase DDJ96_RS09300 PF02110 Hydroxyethylthiazole kinase family DDJ96_RS09305 PF02581 Thiamine monophosphate synthase DDJ96_RS09310 PF01245 Ribosomal protein L19 DDJ96_RS09315 PF01746 tRNA (Guanine-1)-methyltransferase DDJ96_RS09320 PF01782 RimM N-terminal domain DDJ96_RS09320 PF05239 PRC-barrel domain DDJ96_RS09335 PF00886 Ribosomal protein S16 DDJ96_RS09340 PF03358 NADPH-dependent FMN reductase DDJ96_RS09345 PF01872 RibD C-terminal domain DDJ96_RS09350 PF13302 Acetyltransferase (GNAT) domain DDJ96_RS09350 PF00117 Glutamine amidotransferase class-I DDJ96_RS09350 PF03352 Methyladenine glycosylase DDJ96_RS09350 PF13673 Acetyltransferase (GNAT) domain DDJ96_RS09350 PF00958 GMP synthase C terminal domain DDJ96_RS09355 PF00448 SRP54-type protein, GTPase domain DDJ96_RS09355 PF02881 SRP54-type protein, helical bundle domain DDJ96_RS09355 PF02978 Signal peptide binding domain DDJ96_RS09360 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DDJ96_RS09365 PF04463 Protein of unknown function (DUF523) DDJ96_RS09370 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS09370 PF00072 Response regulator receiver domain DDJ96_RS09375 PF16736 Single Cache-like DDJ96_RS09375 PF00989 PAS fold DDJ96_RS09375 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS09375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS09385 PF12849 PBP superfamily domain DDJ96_RS09415 PF00403 Heavy-metal-associated domain DDJ96_RS09420 PF00403 Heavy-metal-associated domain DDJ96_RS09425 PF03965 Penicillinase repressor DDJ96_RS09435 PF13520 Amino acid permease DDJ96_RS09440 PF00403 Heavy-metal-associated domain DDJ96_RS09465 PF13472 GDSL-like Lipase/Acylhydrolase family DDJ96_RS09470 PF00152 tRNA synthetases class II (D, K and N) DDJ96_RS09470 PF01336 OB-fold nucleic acid binding domain DDJ96_RS09475 PF00155 Aminotransferase class I and II DDJ96_RS09485 PF00929 Exonuclease DDJ96_RS09485 PF04851 Type III restriction enzyme, res subunit DDJ96_RS09485 PF13307 Helicase C-terminal domain DDJ96_RS09490 PF00313 'Cold-shock' DNA-binding domain DDJ96_RS09500 PF07943 Penicillin-binding protein 5, C-terminal domain DDJ96_RS09500 PF00768 D-alanyl-D-alanine carboxypeptidase DDJ96_RS09510 PF00654 Voltage gated chloride channel DDJ96_RS09525 PF08032 RNA 2'-O ribose methyltransferase substrate binding DDJ96_RS09525 PF00588 SpoU rRNA Methylase family DDJ96_RS09530 PF00708 Acylphosphatase DDJ96_RS09535 PF02096 60Kd inner membrane protein DDJ96_RS09540 PF02092 Glycyl-tRNA synthetase beta subunit DDJ96_RS09540 PF05746 DALR anticodon binding domain DDJ96_RS09545 PF02091 Glycyl-tRNA synthetase alpha subunit DDJ96_RS09550 PF11967 Recombination protein O N terminal DDJ96_RS09550 PF02565 Recombination protein O C terminal DDJ96_RS09555 PF01926 50S ribosome-binding GTPase DDJ96_RS09555 PF07650 KH domain DDJ96_RS09560 PF01219 Prokaryotic diacylglycerol kinase DDJ96_RS09565 PF02130 Uncharacterized protein family UPF0054 DDJ96_RS09570 PF01966 HD domain DDJ96_RS09570 PF07698 7TM receptor with intracellular HD hydrolase DDJ96_RS09570 PF07697 7TM-HD extracellular DDJ96_RS09575 PF02562 PhoH-like protein DDJ96_RS09580 PF09424 Yqey-like protein DDJ96_RS09585 PF01165 Ribosomal protein S21 DDJ96_RS09590 PF01475 Ferric uptake regulator family DDJ96_RS09595 PF03618 Kinase/pyrophosphorylase DDJ96_RS09605 PF01022 Bacterial regulatory protein, arsR family DDJ96_RS09610 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DDJ96_RS09610 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DDJ96_RS09610 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DDJ96_RS09610 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DDJ96_RS09615 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS09620 PF00232 Glycosyl hydrolase family 1 DDJ96_RS09625 PF11975 Family 4 glycosyl hydrolase C-terminal domain DDJ96_RS09625 PF02056 Family 4 glycosyl hydrolase DDJ96_RS09630 PF01418 Helix-turn-helix domain, rpiR family DDJ96_RS09630 PF01380 SIS domain DDJ96_RS09635 PF02378 Phosphotransferase system, EIIC DDJ96_RS09635 PF00367 phosphotransferase system, EIIB DDJ96_RS09635 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDJ96_RS09640 PF03123 CAT RNA binding domain DDJ96_RS09640 PF00874 PRD domain DDJ96_RS09645 PF00005 ABC transporter DDJ96_RS09645 PF00664 ABC transporter transmembrane region DDJ96_RS09650 PF00664 ABC transporter transmembrane region DDJ96_RS09650 PF00005 ABC transporter DDJ96_RS09655 PF03672 Uncharacterised protein family (UPF0154) DDJ96_RS09660 PF01566 Natural resistance-associated macrophage protein DDJ96_RS09670 PF00248 Aldo/keto reductase family DDJ96_RS09675 PF13411 MerR HTH family regulatory protein DDJ96_RS09680 PF01261 Xylose isomerase-like TIM barrel DDJ96_RS09685 PF00912 Transglycosylase DDJ96_RS09685 PF00905 Penicillin binding protein transpeptidase domain DDJ96_RS09690 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS09695 PF01321 Creatinase/Prolidase N-terminal domain DDJ96_RS09695 PF00557 Metallopeptidase family M24 DDJ96_RS09705 PF12732 YtxH-like protein DDJ96_RS09715 PF00483 Nucleotidyl transferase DDJ96_RS09720 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DDJ96_RS09720 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DDJ96_RS09725 PF01790 Prolipoprotein diacylglyceryl transferase DDJ96_RS09730 PF07475 HPr Serine kinase C-terminal domain DDJ96_RS09730 PF02603 HPr Serine kinase N terminus DDJ96_RS09760 PF01895 PhoU domain DDJ96_RS09765 PF00005 ABC transporter DDJ96_RS09770 PF00005 ABC transporter DDJ96_RS09775 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS09780 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS09785 PF12849 PBP superfamily domain DDJ96_RS09790 PF13091 PLD-like domain DDJ96_RS09790 PF13396 Phospholipase_D-nuclease N-terminal DDJ96_RS09795 PF18075 FtsX extracellular domain DDJ96_RS09795 PF02687 FtsX-like permease family DDJ96_RS09800 PF00005 ABC transporter DDJ96_RS09810 PF07516 SecA Wing and Scaffold domain DDJ96_RS09810 PF01043 SecA preprotein cross-linking domain DDJ96_RS09810 PF02810 SEC-C motif DDJ96_RS09810 PF07517 SecA DEAD-like domain DDJ96_RS09815 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DDJ96_RS09815 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DDJ96_RS09825 PF00271 Helicase conserved C-terminal domain DDJ96_RS09825 PF04851 Type III restriction enzyme, res subunit DDJ96_RS09835 PF01205 Uncharacterized protein family UPF0029 DDJ96_RS09835 PF09186 Domain of unknown function (DUF1949) DDJ96_RS09840 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS09840 PF07702 UTRA domain DDJ96_RS09845 PF01869 BadF/BadG/BcrA/BcrD ATPase family DDJ96_RS09870 PF00480 ROK family DDJ96_RS09875 PF00583 Acetyltransferase (GNAT) family DDJ96_RS09880 PF01809 Putative membrane protein insertion efficiency factor DDJ96_RS09890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DDJ96_RS09900 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DDJ96_RS09900 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DDJ96_RS09905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDJ96_RS09905 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDJ96_RS09910 PF00231 ATP synthase DDJ96_RS09915 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDJ96_RS09915 PF00306 ATP synthase alpha/beta chain, C terminal domain DDJ96_RS09915 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDJ96_RS09920 PF00213 ATP synthase delta (OSCP) subunit DDJ96_RS09925 PF00430 ATP synthase B/B' CF(0) DDJ96_RS09930 PF00137 ATP synthase subunit C DDJ96_RS09935 PF00119 ATP synthase A chain DDJ96_RS09940 PF01668 SmpB protein DDJ96_RS09945 PF17876 Cold shock domain DDJ96_RS09945 PF08206 Ribonuclease B OB domain DDJ96_RS09945 PF00773 RNB domain DDJ96_RS09945 PF00575 S1 RNA binding domain DDJ96_RS09955 PF03840 Preprotein translocase SecG subunit DDJ96_RS09960 PF14542 GCN5-related N-acetyl-transferase DDJ96_RS09970 PF01156 Inosine-uridine preferring nucleoside hydrolase DDJ96_RS09980 PF00132 Bacterial transferase hexapeptide (six repeats) DDJ96_RS09980 PF12464 Maltose acetyltransferase DDJ96_RS10030 PF03952 Enolase, N-terminal domain DDJ96_RS10030 PF00113 Enolase, C-terminal TIM barrel domain DDJ96_RS10035 PF00121 Triosephosphate isomerase DDJ96_RS10040 PF00162 Phosphoglycerate kinase DDJ96_RS10045 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DDJ96_RS10045 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DDJ96_RS10050 PF04198 Putative sugar-binding domain DDJ96_RS10055 PF00309 Sigma-54 factor, Activator interacting domain (AID) DDJ96_RS10055 PF04963 Sigma-54 factor, core binding domain DDJ96_RS10055 PF04552 Sigma-54, DNA binding domain DDJ96_RS10075 PF05066 HB1, ASXL, restriction endonuclease HTH domain DDJ96_RS10085 PF03099 Biotin/lipoate A/B protein ligase family DDJ96_RS10090 PF01966 HD domain DDJ96_RS10100 PF00293 NUDIX domain DDJ96_RS10105 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDJ96_RS10110 PF02386 Cation transport protein DDJ96_RS10115 PF01813 ATP synthase subunit D DDJ96_RS10120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDJ96_RS10120 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDJ96_RS10125 PF02874 ATP synthase alpha/beta family, beta-barrel domain DDJ96_RS10125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DDJ96_RS10125 PF16886 ATPsynthase alpha/beta subunit N-term extension DDJ96_RS10130 PF01990 ATP synthase (F/14-kDa) subunit DDJ96_RS10135 PF01992 ATP synthase (C/AC39) subunit DDJ96_RS10145 PF00137 ATP synthase subunit C DDJ96_RS10150 PF01496 V-type ATPase 116kDa subunit family DDJ96_RS10160 PF07722 Peptidase C26 DDJ96_RS10165 PF06874 Firmicute fructose-1,6-bisphosphatase DDJ96_RS10175 PF13732 Domain of unknown function (DUF4162) DDJ96_RS10175 PF00005 ABC transporter DDJ96_RS10180 PF01541 GIY-YIG catalytic domain DDJ96_RS10180 PF08459 UvrC Helix-hairpin-helix N-terminal DDJ96_RS10180 PF02151 UvrB/uvrC motif DDJ96_RS10185 PF00085 Thioredoxin DDJ96_RS10190 PF00488 MutS domain V DDJ96_RS10190 PF01713 Smr domain DDJ96_RS10205 PF01351 Ribonuclease HII DDJ96_RS10205 PF11858 Domain of unknown function (DUF3378) DDJ96_RS10210 PF08239 Bacterial SH3 domain DDJ96_RS10210 PF01520 N-acetylmuramoyl-L-alanine amidase DDJ96_RS10215 PF00041 Fibronectin type III domain DDJ96_RS10215 PF00704 Glycosyl hydrolases family 18 DDJ96_RS10220 PF00041 Fibronectin type III domain DDJ96_RS10220 PF00704 Glycosyl hydrolases family 18 DDJ96_RS10225 PF00440 Bacterial regulatory proteins, tetR family DDJ96_RS10230 PF00005 ABC transporter DDJ96_RS10240 PF01261 Xylose isomerase-like TIM barrel DDJ96_RS10245 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DDJ96_RS10255 PF03611 PTS system sugar-specific permease component DDJ96_RS10275 PF01070 FMN-dependent dehydrogenase DDJ96_RS10280 PF02567 Phenazine biosynthesis-like protein DDJ96_RS10285 PF02423 Ornithine cyclodeaminase/mu-crystallin family DDJ96_RS10290 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS10290 PF00155 Aminotransferase class I and II DDJ96_RS10295 PF03949 Malic enzyme, NAD binding domain DDJ96_RS10295 PF00390 Malic enzyme, N-terminal domain DDJ96_RS10300 PF03390 2-hydroxycarboxylate transporter family DDJ96_RS10315 PF06949 Protein of unknown function (DUF1292) DDJ96_RS10320 PF03652 Holliday junction resolvase DDJ96_RS10325 PF06135 IreB regulatory phosphoprotein DDJ96_RS10340 PF00440 Bacterial regulatory proteins, tetR family DDJ96_RS10350 PF12821 Threonine/Serine exporter, ThrE DDJ96_RS10355 PF09323 Domain of unknown function (DUF1980) DDJ96_RS10360 PF03773 Predicted permease DDJ96_RS10370 PF17760 UvrA interaction domain DDJ96_RS10370 PF17755 UvrA DNA-binding domain DDJ96_RS10375 PF02629 CoA binding domain DDJ96_RS10375 PF06971 Putative DNA-binding protein N-terminus DDJ96_RS10380 PF16326 ABC transporter C-terminal domain DDJ96_RS10380 PF12848 ABC transporter DDJ96_RS10380 PF00005 ABC transporter DDJ96_RS10385 PF05336 L-rhamnose mutarotase DDJ96_RS10405 PF00005 ABC transporter DDJ96_RS10410 PF07730 Histidine kinase DDJ96_RS10415 PF00196 Bacterial regulatory proteins, luxR family DDJ96_RS10415 PF00072 Response regulator receiver domain DDJ96_RS10515 PF12642 Conjugative transposon protein TcpC DDJ96_RS10530 PF18106 Rolling Circle replication initiation protein N-terminal domain DDJ96_RS10530 PF02486 Replication initiation factor DDJ96_RS10600 PF01381 Helix-turn-helix DDJ96_RS10605 PF06114 IrrE N-terminal-like domain DDJ96_RS10630 PF13416 Bacterial extracellular solute-binding protein DDJ96_RS10635 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS10640 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS10645 PF00005 ABC transporter DDJ96_RS10645 PF08402 TOBE domain DDJ96_RS10655 PF08240 Alcohol dehydrogenase GroES-like domain DDJ96_RS10655 PF00107 Zinc-binding dehydrogenase DDJ96_RS10660 PF02441 Flavoprotein DDJ96_RS10660 PF04127 DNA / pantothenate metabolism flavoprotein DDJ96_RS10665 PF02441 Flavoprotein DDJ96_RS10670 PF12822 ECF transporter, substrate-specific component DDJ96_RS10680 PF02801 Beta-ketoacyl synthase, C-terminal domain DDJ96_RS10680 PF14765 Polyketide synthase dehydratase DDJ96_RS10680 PF00698 Acyl transferase domain DDJ96_RS10680 PF08240 Alcohol dehydrogenase GroES-like domain DDJ96_RS10680 PF00550 Phosphopantetheine attachment site DDJ96_RS10680 PF00109 Beta-ketoacyl synthase, N-terminal domain DDJ96_RS10680 PF16197 Ketoacyl-synthetase C-terminal extension DDJ96_RS10680 PF08659 KR domain DDJ96_RS10685 PF00890 FAD binding domain DDJ96_RS10685 PF14537 Cytochrome c3 DDJ96_RS10700 PF01565 FAD binding domain DDJ96_RS10700 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DDJ96_RS10705 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DDJ96_RS10710 PF03372 Endonuclease/Exonuclease/phosphatase family DDJ96_RS10715 PF14480 DNA polymerase III polC-type N-terminus I DDJ96_RS10715 PF07733 Bacterial DNA polymerase III alpha NTPase domain DDJ96_RS10715 PF02811 PHP domain DDJ96_RS10715 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DDJ96_RS10715 PF14579 Helix-hairpin-helix motif DDJ96_RS10715 PF00929 Exonuclease DDJ96_RS10715 PF11490 DNA polymerase III polC-type N-terminus II DDJ96_RS10725 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DDJ96_RS10730 PF01515 Phosphate acetyl/butaryl transferase DDJ96_RS10735 PF03167 Uracil DNA glycosylase superfamily DDJ96_RS10770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DDJ96_RS10785 PF01470 Pyroglutamyl peptidase DDJ96_RS10805 PF13520 Amino acid permease DDJ96_RS10810 PF07972 NrdI Flavodoxin like DDJ96_RS10815 PF02378 Phosphotransferase system, EIIC DDJ96_RS10815 PF00367 phosphotransferase system, EIIB DDJ96_RS10820 PF13580 SIS domain DDJ96_RS10865 PF00300 Histidine phosphatase superfamily (branch 1) DDJ96_RS10870 PF00005 ABC transporter DDJ96_RS10870 PF12848 ABC transporter DDJ96_RS10875 PF02595 Glycerate kinase family DDJ96_RS10885 PF00324 Amino acid permease DDJ96_RS10890 PF03553 Na+/H+ antiporter family DDJ96_RS10895 PF01546 Peptidase family M20/M25/M40 DDJ96_RS10900 PF03180 NLPA lipoprotein DDJ96_RS10905 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS10910 PF00005 ABC transporter DDJ96_RS10910 PF09383 NIL domain DDJ96_RS10965 PF00689 Cation transporting ATPase, C-terminus DDJ96_RS10965 PF00690 Cation transporter/ATPase, N-terminus DDJ96_RS10970 PF00334 Nucleoside diphosphate kinase DDJ96_RS10980 PF00884 Sulfatase DDJ96_RS10990 PF00232 Glycosyl hydrolase family 1 DDJ96_RS11005 PF01712 Deoxynucleoside kinase DDJ96_RS11015 PF03641 Possible lysine decarboxylase DDJ96_RS11025 PF07071 KDGP aldolase DDJ96_RS11030 PF03841 L-seryl-tRNA selenium transferase DDJ96_RS11035 PF01979 Amidohydrolase family DDJ96_RS11045 PF02378 Phosphotransferase system, EIIC DDJ96_RS11050 PF07702 UTRA domain DDJ96_RS11050 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS11055 PF00232 Glycosyl hydrolase family 1 DDJ96_RS11060 PF02378 Phosphotransferase system, EIIC DDJ96_RS11060 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDJ96_RS11060 PF00367 phosphotransferase system, EIIB DDJ96_RS11065 PF03123 CAT RNA binding domain DDJ96_RS11065 PF00874 PRD domain DDJ96_RS11070 PF04203 Sortase domain DDJ96_RS11080 PF07690 Major Facilitator Superfamily DDJ96_RS11085 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase DDJ96_RS11090 PF02811 PHP domain DDJ96_RS11095 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS11100 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS11105 PF00005 ABC transporter DDJ96_RS11115 PF00781 Diacylglycerol kinase catalytic domain DDJ96_RS11120 PF06249 Ethanolamine utilisation protein EutQ DDJ96_RS11125 PF04346 Ethanolamine utilisation protein, EutH DDJ96_RS11130 PF03319 Ethanolamine utilisation protein EutN/carboxysome DDJ96_RS11140 PF06130 Phosphate propanoyltransferase DDJ96_RS11150 PF00936 BMC domain DDJ96_RS11155 PF00171 Aldehyde dehydrogenase family DDJ96_RS11155 PF00465 Iron-containing alcohol dehydrogenase DDJ96_RS11165 PF00936 BMC domain DDJ96_RS11170 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DDJ96_RS11175 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DDJ96_RS11180 PF06277 Ethanolamine utilisation protein EutA DDJ96_RS11185 PF12282 Signal transduction histidine kinase DDJ96_RS11185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS11185 PF07568 Histidine kinase DDJ96_RS11190 PF00072 Response regulator receiver domain DDJ96_RS11190 PF03861 ANTAR domain DDJ96_RS11195 PF00936 BMC domain DDJ96_RS11200 PF00465 Iron-containing alcohol dehydrogenase DDJ96_RS11205 PF01923 Cobalamin adenosyltransferase DDJ96_RS11210 PF10662 Ethanolamine utilisation - propanediol utilisation DDJ96_RS11220 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS11220 PF07702 UTRA domain DDJ96_RS11225 PF05257 CHAP domain DDJ96_RS11225 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DDJ96_RS11240 PF00580 UvrD/REP helicase N-terminal domain DDJ96_RS11240 PF13361 UvrD-like helicase C-terminal domain DDJ96_RS11255 PF00005 ABC transporter DDJ96_RS11265 PF01032 FecCD transport family DDJ96_RS11270 PF01497 Periplasmic binding protein DDJ96_RS11280 PF00232 Glycosyl hydrolase family 1 DDJ96_RS11325 PF00075 RNase H DDJ96_RS11390 PF00717 Peptidase S24-like DDJ96_RS11390 PF01381 Helix-turn-helix DDJ96_RS11395 PF02899 Phage integrase, N-terminal SAM-like domain DDJ96_RS11395 PF00589 Phage integrase family DDJ96_RS11405 PF00291 Pyridoxal-phosphate dependent enzyme DDJ96_RS11420 PF18416 N-acetylglucosamine binding protein domain 2 DDJ96_RS11420 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading DDJ96_RS11425 PF13676 TIR domain DDJ96_RS11705 PF00589 Phage integrase family DDJ96_RS11705 PF14659 Phage integrase, N-terminal SAM-like domain DDJ96_RS11710 PF01458 Uncharacterized protein family (UPF0051) DDJ96_RS11715 PF01592 NifU-like N terminal domain DDJ96_RS11720 PF00266 Aminotransferase class-V DDJ96_RS11725 PF01458 Uncharacterized protein family (UPF0051) DDJ96_RS11730 PF00005 ABC transporter DDJ96_RS11735 PF03180 NLPA lipoprotein DDJ96_RS11740 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS11745 PF09383 NIL domain DDJ96_RS11745 PF00005 ABC transporter DDJ96_RS11750 PF01597 Glycine cleavage H-protein DDJ96_RS11755 PF03960 ArsC family DDJ96_RS11760 PF01098 Cell cycle protein DDJ96_RS11765 PF03466 LysR substrate binding domain DDJ96_RS11765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DDJ96_RS11775 PF03601 Conserved hypothetical protein 698 DDJ96_RS11780 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DDJ96_RS11780 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DDJ96_RS11785 PF00535 Glycosyl transferase family 2 DDJ96_RS11790 PF08924 Domain of unknown function (DUF1906) DDJ96_RS11790 PF01471 Putative peptidoglycan binding domain DDJ96_RS11805 PF01476 LysM domain DDJ96_RS11805 PF01464 Transglycosylase SLT domain DDJ96_RS11820 PF04616 Glycosyl hydrolases family 43 DDJ96_RS11820 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain DDJ96_RS11830 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS11835 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS11850 PF00155 Aminotransferase class I and II DDJ96_RS11855 PF02378 Phosphotransferase system, EIIC DDJ96_RS11855 PF00367 phosphotransferase system, EIIB DDJ96_RS11860 PF01418 Helix-turn-helix domain, rpiR family DDJ96_RS11860 PF01380 SIS domain DDJ96_RS11865 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DDJ96_RS11875 PF00885 6,7-dimethyl-8-ribityllumazine synthase DDJ96_RS11880 PF00925 GTP cyclohydrolase II DDJ96_RS11880 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DDJ96_RS11885 PF00677 Lumazine binding domain DDJ96_RS11890 PF01872 RibD C-terminal domain DDJ96_RS11890 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DDJ96_RS11910 PF07859 alpha/beta hydrolase fold DDJ96_RS11915 PF00464 Serine hydroxymethyltransferase DDJ96_RS11920 PF01300 Telomere recombination DDJ96_RS11920 PF03481 Putative GTP-binding controlling metal-binding DDJ96_RS11925 PF05175 Methyltransferase small domain DDJ96_RS11925 PF17827 PrmC N-terminal domain DDJ96_RS11930 PF03462 PCRF domain DDJ96_RS11930 PF00472 RF-1 domain DDJ96_RS11935 PF00265 Thymidine kinase DDJ96_RS11950 PF13145 PPIC-type PPIASE domain DDJ96_RS11955 PF10502 Signal peptidase, peptidase S26 DDJ96_RS11970 PF02386 Cation transport protein DDJ96_RS11975 PF08245 Mur ligase middle domain DDJ96_RS11975 PF08353 Domain of unknown function (DUF1727) DDJ96_RS11980 PF07685 CobB/CobQ-like glutamine amidotransferase domain DDJ96_RS11985 PF08125 Mannitol dehydrogenase C-terminal domain DDJ96_RS11985 PF01232 Mannitol dehydrogenase Rossmann domain DDJ96_RS11990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS11995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS11995 PF02378 Phosphotransferase system, EIIC DDJ96_RS12045 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS12050 PF08279 HTH domain DDJ96_RS12050 PF05043 Mga helix-turn-helix domain DDJ96_RS12050 PF00874 PRD domain DDJ96_RS12050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS12050 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS12055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS12055 PF02378 Phosphotransferase system, EIIC DDJ96_RS12060 PF06800 Sugar transport protein DDJ96_RS12065 PF05025 RbsD / FucU transport protein family DDJ96_RS12070 PF00294 pfkB family carbohydrate kinase DDJ96_RS12075 PF01238 Phosphomannose isomerase type I DDJ96_RS12090 PF00005 ABC transporter DDJ96_RS12090 PF00664 ABC transporter transmembrane region DDJ96_RS12095 PF00664 ABC transporter transmembrane region DDJ96_RS12095 PF00005 ABC transporter DDJ96_RS12100 PF13977 BetI-type transcriptional repressor, C-terminal DDJ96_RS12100 PF00440 Bacterial regulatory proteins, tetR family DDJ96_RS12110 PF02525 Flavodoxin-like fold DDJ96_RS12115 PF08951 Enterocin A Immunity DDJ96_RS12120 PF10282 Lactonase, 7-bladed beta-propeller DDJ96_RS12130 PF01594 AI-2E family transporter DDJ96_RS12140 PF00884 Sulfatase DDJ96_RS12145 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain DDJ96_RS12145 PF04616 Glycosyl hydrolases family 43 DDJ96_RS12150 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DDJ96_RS12160 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS12165 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS12170 PF13416 Bacterial extracellular solute-binding protein DDJ96_RS12175 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DDJ96_RS12190 PF02540 NAD synthase DDJ96_RS12195 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DDJ96_RS12195 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DDJ96_RS12195 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DDJ96_RS12205 PF13411 MerR HTH family regulatory protein DDJ96_RS12205 PF07739 TipAS antibiotic-recognition domain DDJ96_RS12210 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DDJ96_RS12210 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS12220 PF02378 Phosphotransferase system, EIIC DDJ96_RS12225 PF00118 TCP-1/cpn60 chaperonin family DDJ96_RS12230 PF00166 Chaperonin 10 Kd subunit DDJ96_RS12235 PF02517 CPBP intramembrane metalloprotease DDJ96_RS12240 PF00753 Metallo-beta-lactamase superfamily DDJ96_RS12255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS12255 PF00672 HAMP domain DDJ96_RS12255 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS12255 PF13426 PAS domain DDJ96_RS12260 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS12260 PF00072 Response regulator receiver domain DDJ96_RS12275 PF02645 Uncharacterised protein, DegV family COG1307 DDJ96_RS12290 PF13580 SIS domain DDJ96_RS12295 PF01380 SIS domain DDJ96_RS12300 PF03613 PTS system mannose/fructose/sorbose family IID component DDJ96_RS12305 PF03609 PTS system sorbose-specific iic component DDJ96_RS12310 PF03830 PTS system sorbose subfamily IIB component DDJ96_RS12320 PF03610 PTS system fructose IIA component DDJ96_RS12320 PF00874 PRD domain DDJ96_RS12320 PF00158 Sigma-54 interaction domain DDJ96_RS12325 PF01074 Glycosyl hydrolases family 38 N-terminal domain DDJ96_RS12325 PF09261 Alpha mannosidase middle domain DDJ96_RS12325 PF07748 Glycosyl hydrolases family 38 C-terminal domain DDJ96_RS12330 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS12330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS12330 PF02378 Phosphotransferase system, EIIC DDJ96_RS12335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS12345 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS12360 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS12365 PF00005 ABC transporter DDJ96_RS12365 PF00571 CBS domain DDJ96_RS12370 PF07729 FCD domain DDJ96_RS12370 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS12385 PF00462 Glutaredoxin DDJ96_RS12390 PF08343 Ribonucleotide reductase N-terminal DDJ96_RS12390 PF00317 Ribonucleotide reductase, all-alpha domain DDJ96_RS12390 PF02867 Ribonucleotide reductase, barrel domain DDJ96_RS12395 PF00268 Ribonucleotide reductase, small chain DDJ96_RS12405 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DDJ96_RS12405 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DDJ96_RS12410 PF00202 Aminotransferase class-III DDJ96_RS12420 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DDJ96_RS12420 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DDJ96_RS12450 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain DDJ96_RS12450 PF02278 Polysaccharide lyase family 8, super-sandwich domain DDJ96_RS12450 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain DDJ96_RS12460 PF03609 PTS system sorbose-specific iic component DDJ96_RS12465 PF03830 PTS system sorbose subfamily IIB component DDJ96_RS12465 PF03610 PTS system fructose IIA component DDJ96_RS12470 PF07702 UTRA domain DDJ96_RS12470 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS12475 PF07470 Glycosyl Hydrolase Family 88 DDJ96_RS12480 PF01301 Glycosyl hydrolases family 35 DDJ96_RS12485 PF01594 AI-2E family transporter DDJ96_RS12490 PF02308 MgtC family DDJ96_RS12495 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DDJ96_RS12500 PF07690 Major Facilitator Superfamily DDJ96_RS12530 PF16320 Ribosomal protein L7/L12 dimerisation domain DDJ96_RS12530 PF00542 Ribosomal protein L7/L12 C-terminal domain DDJ96_RS12535 PF00466 Ribosomal protein L10 DDJ96_RS12540 PF00687 Ribosomal protein L1p/L10e family DDJ96_RS12545 PF00298 Ribosomal protein L11, RNA binding domain DDJ96_RS12545 PF03946 Ribosomal protein L11, N-terminal domain DDJ96_RS12550 PF03315 Serine dehydratase beta chain DDJ96_RS12550 PF01842 ACT domain DDJ96_RS12555 PF03313 Serine dehydratase alpha chain DDJ96_RS12560 PF01979 Amidohydrolase family DDJ96_RS12565 PF13382 Adenine deaminase C-terminal domain DDJ96_RS12565 PF01979 Amidohydrolase family DDJ96_RS12575 PF08402 TOBE domain DDJ96_RS12575 PF00005 ABC transporter DDJ96_RS12585 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS12595 PF02357 Transcription termination factor nusG DDJ96_RS12595 PF00467 KOW motif DDJ96_RS12610 PF00471 Ribosomal protein L33 DDJ96_RS12625 PF00781 Diacylglycerol kinase catalytic domain DDJ96_RS12630 PF14490 Helix-hairpin-helix containing domain DDJ96_RS12630 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DDJ96_RS12630 PF13538 UvrD-like helicase C-terminal domain DDJ96_RS12640 PF00588 SpoU rRNA Methylase family DDJ96_RS12645 PF08241 Methyltransferase domain DDJ96_RS12650 PF03932 CutC family DDJ96_RS12655 PF00571 CBS domain DDJ96_RS12655 PF01769 Divalent cation transporter DDJ96_RS12655 PF03448 MgtE intracellular N domain DDJ96_RS12660 PF00849 RNA pseudouridylate synthase DDJ96_RS12665 PF01513 ATP-NAD kinase DDJ96_RS12670 PF04607 Region found in RelA / SpoT proteins DDJ96_RS12700 PF02780 Transketolase, C-terminal domain DDJ96_RS12700 PF02779 Transketolase, pyrimidine binding domain DDJ96_RS12700 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DDJ96_RS12705 PF00456 Transketolase, thiamine diphosphate binding domain DDJ96_RS12710 PF03611 PTS system sugar-specific permease component DDJ96_RS12720 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS12725 PF00005 ABC transporter DDJ96_RS12730 PF00107 Zinc-binding dehydrogenase DDJ96_RS12730 PF08240 Alcohol dehydrogenase GroES-like domain DDJ96_RS12735 PF01432 Peptidase family M3 DDJ96_RS12735 PF08439 Oligopeptidase F DDJ96_RS12745 PF05389 Negative regulator of genetic competence (MecA) DDJ96_RS12750 PF03960 ArsC family DDJ96_RS12755 PF13419 Haloacid dehalogenase-like hydrolase DDJ96_RS12760 PF04434 SWIM zinc finger DDJ96_RS12760 PF00176 SNF2 family N-terminal domain DDJ96_RS12760 PF00271 Helicase conserved C-terminal domain DDJ96_RS12765 PF13476 AAA domain DDJ96_RS12770 PF12320 Type 5 capsule protein repressor C-terminal domain DDJ96_RS12770 PF00149 Calcineurin-like phosphoesterase DDJ96_RS12775 PF01553 Acyltransferase DDJ96_RS12780 PF05175 Methyltransferase small domain DDJ96_RS12785 PF01541 GIY-YIG catalytic domain DDJ96_RS12790 PF01757 Acyltransferase family DDJ96_RS12815 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DDJ96_RS12815 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DDJ96_RS12820 PF01336 OB-fold nucleic acid binding domain DDJ96_RS12820 PF02938 GAD domain DDJ96_RS12820 PF00152 tRNA synthetases class II (D, K and N) DDJ96_RS12825 PF03129 Anticodon binding domain DDJ96_RS12825 PF13393 Histidyl-tRNA synthetase DDJ96_RS12835 PF00248 Aldo/keto reductase family DDJ96_RS12850 PF00067 Cytochrome P450 DDJ96_RS12860 PF02580 D-Tyr-tRNA(Tyr) deacylase DDJ96_RS12865 PF02824 TGS domain DDJ96_RS12865 PF04607 Region found in RelA / SpoT proteins DDJ96_RS12865 PF13291 ACT domain DDJ96_RS12870 PF04452 RNA methyltransferase DDJ96_RS12885 PF02245 Methylpurine-DNA glycosylase (MPG) DDJ96_RS12890 PF12002 MgsA AAA+ ATPase C terminal DDJ96_RS12890 PF05496 Holliday junction DNA helicase RuvB P-loop domain DDJ96_RS12890 PF16193 AAA C-terminal domain DDJ96_RS12905 PF00582 Universal stress protein family DDJ96_RS12910 PF02378 Phosphotransferase system, EIIC DDJ96_RS12910 PF00367 phosphotransferase system, EIIB DDJ96_RS12910 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DDJ96_RS12915 PF08244 Glycosyl hydrolases family 32 C terminal DDJ96_RS12915 PF00251 Glycosyl hydrolases family 32 N-terminal domain DDJ96_RS12920 PF00356 Bacterial regulatory proteins, lacI family DDJ96_RS12955 PF02557 D-alanyl-D-alanine carboxypeptidase DDJ96_RS12965 PF00871 Acetokinase family DDJ96_RS12970 PF02384 N-6 DNA Methylase DDJ96_RS12995 PF07963 Prokaryotic N-terminal methylation motif DDJ96_RS13000 PF00482 Type II secretion system (T2SS), protein F DDJ96_RS13005 PF00437 Type II/IV secretion system protein DDJ96_RS13010 PF01979 Amidohydrolase family DDJ96_RS13010 PF13382 Adenine deaminase C-terminal domain DDJ96_RS13015 PF02390 Putative methyltransferase DDJ96_RS13025 PF05975 Bacterial ABC transporter protein EcsB DDJ96_RS13030 PF00005 ABC transporter DDJ96_RS13035 PF01230 HIT domain DDJ96_RS13045 PF13145 PPIC-type PPIASE domain DDJ96_RS13050 PF01336 OB-fold nucleic acid binding domain DDJ96_RS13050 PF01966 HD domain DDJ96_RS13055 PF13514 AAA domain DDJ96_RS13080 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DDJ96_RS13080 PF04616 Glycosyl hydrolases family 43 DDJ96_RS13095 PF01738 Dienelactone hydrolase family DDJ96_RS13100 PF00295 Glycosyl hydrolases family 28 DDJ96_RS13105 PF07470 Glycosyl Hydrolase Family 88 DDJ96_RS13110 PF13416 Bacterial extracellular solute-binding protein DDJ96_RS13120 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS13125 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS13130 PF12833 Helix-turn-helix domain DDJ96_RS13130 PF17853 GGDEF-like domain DDJ96_RS13135 PF08125 Mannitol dehydrogenase C-terminal domain DDJ96_RS13135 PF01232 Mannitol dehydrogenase Rossmann domain DDJ96_RS13140 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus DDJ96_RS13140 PF08666 SAF domain DDJ96_RS13145 PF02614 Glucuronate isomerase DDJ96_RS13150 PF13472 GDSL-like Lipase/Acylhydrolase family DDJ96_RS13160 PF06133 Control of competence regulator ComK, YlbF/YmcA DDJ96_RS13165 PF00905 Penicillin binding protein transpeptidase domain DDJ96_RS13165 PF00912 Transglycosylase DDJ96_RS13170 PF00849 RNA pseudouridylate synthase DDJ96_RS13170 PF01479 S4 domain DDJ96_RS13190 PF00480 ROK family DDJ96_RS13195 PF18438 Glycosyl hydrolases family 38 C-terminal domain 1 DDJ96_RS13195 PF17677 Glycosyl hydrolases family 38 C-terminal beta sandwich domain DDJ96_RS13195 PF09261 Alpha mannosidase middle domain DDJ96_RS13195 PF07748 Glycosyl hydrolases family 38 C-terminal domain DDJ96_RS13195 PF01074 Glycosyl hydrolases family 38 N-terminal domain DDJ96_RS13205 PF00392 Bacterial regulatory proteins, gntR family DDJ96_RS13220 PF00072 Response regulator receiver domain DDJ96_RS13220 PF12833 Helix-turn-helix domain DDJ96_RS13225 PF00672 HAMP domain DDJ96_RS13225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS13225 PF02743 Cache domain DDJ96_RS13225 PF06580 Histidine kinase DDJ96_RS13235 PF12010 Domain of unknown function (DUF3502) DDJ96_RS13240 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS13245 PF00528 Binding-protein-dependent transport system inner membrane component DDJ96_RS13250 PF01479 S4 domain DDJ96_RS13250 PF00849 RNA pseudouridylate synthase DDJ96_RS13255 PF14667 Polysaccharide biosynthesis C-terminal domain DDJ96_RS13255 PF01943 Polysaccharide biosynthesis protein DDJ96_RS13260 PF08245 Mur ligase middle domain DDJ96_RS13260 PF02875 Mur ligase family, glutamate ligase domain DDJ96_RS13265 PF02378 Phosphotransferase system, EIIC DDJ96_RS13275 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DDJ96_RS13280 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS13280 PF08279 HTH domain DDJ96_RS13280 PF05043 Mga helix-turn-helix domain DDJ96_RS13280 PF00874 PRD domain DDJ96_RS13285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS13295 PF00133 tRNA synthetases class I (I, L, M and V) DDJ96_RS13295 PF08264 Anticodon-binding domain of tRNA DDJ96_RS13295 PF13603 Leucyl-tRNA synthetase, Domain 2 DDJ96_RS13295 PF09334 tRNA synthetases class I (M) DDJ96_RS13300 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DDJ96_RS13300 PF01476 LysM domain DDJ96_RS13305 PF01569 PAP2 superfamily DDJ96_RS13310 PF16199 Radical_SAM C-terminal domain DDJ96_RS13310 PF04055 Radical SAM superfamily DDJ96_RS13315 PF06962 Putative rRNA methylase DDJ96_RS13325 PF00005 ABC transporter DDJ96_RS13325 PF00664 ABC transporter transmembrane region DDJ96_RS13330 PF00005 ABC transporter DDJ96_RS13330 PF00664 ABC transporter transmembrane region DDJ96_RS13335 PF03061 Thioesterase superfamily DDJ96_RS13345 PF07690 Major Facilitator Superfamily DDJ96_RS13350 PF02773 S-adenosylmethionine synthetase, C-terminal domain DDJ96_RS13350 PF00438 S-adenosylmethionine synthetase, N-terminal domain DDJ96_RS13350 PF02772 S-adenosylmethionine synthetase, central domain DDJ96_RS13500 PF00152 tRNA synthetases class II (D, K and N) DDJ96_RS13500 PF01336 OB-fold nucleic acid binding domain DDJ96_RS13505 PF01207 Dihydrouridine synthase (Dus) DDJ96_RS13510 PF01430 Hsp33 protein DDJ96_RS13515 PF17862 AAA+ lid domain DDJ96_RS13515 PF06480 FtsH Extracellular DDJ96_RS13515 PF00004 ATPase family associated with various cellular activities (AAA) DDJ96_RS13515 PF01434 Peptidase family M41 DDJ96_RS13520 PF00156 Phosphoribosyl transferase domain DDJ96_RS13525 PF11734 TilS substrate C-terminal domain DDJ96_RS13525 PF01171 PP-loop family DDJ96_RS13530 PF00575 S1 RNA binding domain DDJ96_RS13540 PF01479 S4 domain DDJ96_RS13545 PF14667 Polysaccharide biosynthesis C-terminal domain DDJ96_RS13545 PF01943 Polysaccharide biosynthesis protein DDJ96_RS13550 PF03461 TRCF domain DDJ96_RS13550 PF02559 CarD-like/TRCF domain DDJ96_RS13550 PF00270 DEAD/DEAH box helicase DDJ96_RS13550 PF17757 UvrB interaction domain DDJ96_RS13550 PF00271 Helicase conserved C-terminal domain DDJ96_RS13555 PF01195 Peptidyl-tRNA hydrolase DDJ96_RS13560 PF00056 lactate/malate dehydrogenase, NAD binding domain DDJ96_RS13560 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DDJ96_RS13580 PF00877 NlpC/P60 family DDJ96_RS13590 PF04085 rod shape-determining protein MreC DDJ96_RS13600 PF00834 Ribulose-phosphate 3 epimerase family DDJ96_RS13605 PF03193 RsgA GTPase DDJ96_RS13605 PF16745 RsgA N-terminal domain DDJ96_RS13610 PF00069 Protein kinase domain DDJ96_RS13610 PF03793 PASTA domain DDJ96_RS13620 PF01189 16S rRNA methyltransferase RsmB/F DDJ96_RS13620 PF01029 NusB family DDJ96_RS13625 PF02911 Formyl transferase, C-terminal domain DDJ96_RS13625 PF00551 Formyl transferase DDJ96_RS13630 PF01327 Polypeptide deformylase DDJ96_RS13635 PF00271 Helicase conserved C-terminal domain DDJ96_RS13635 PF17764 3′ DNA-binding domain (3′BD) DDJ96_RS13635 PF04851 Type III restriction enzyme, res subunit DDJ96_RS13635 PF18074 Primosomal protein N C-terminal domain DDJ96_RS13635 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DDJ96_RS13640 PF01192 RNA polymerase Rpb6 DDJ96_RS13645 PF00625 Guanylate kinase DDJ96_RS13650 PF08340 Domain of unknown function (DUF1732) DDJ96_RS13650 PF03755 YicC-like family, N-terminal region DDJ96_RS13675 PF14572 Phosphoribosyl synthetase-associated domain DDJ96_RS13675 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DDJ96_RS13680 PF00132 Bacterial transferase hexapeptide (six repeats) DDJ96_RS13680 PF00483 Nucleotidyl transferase DDJ96_RS13685 PF09182 Bacterial purine repressor, N-terminal DDJ96_RS13685 PF00156 Phosphoribosyl transferase domain DDJ96_RS13690 PF00950 ABC 3 transport family DDJ96_RS13695 PF00005 ABC transporter DDJ96_RS13700 PF01297 Zinc-uptake complex component A periplasmic DDJ96_RS13700 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment DDJ96_RS13705 PF08544 GHMP kinases C terminal DDJ96_RS13705 PF00288 GHMP kinases N terminal domain DDJ96_RS13710 PF09924 Uncharacterised conserved protein (DUF2156) DDJ96_RS13710 PF03706 Lysylphosphatidylglycerol synthase TM region DDJ96_RS13715 PF03807 NADP oxidoreductase coenzyme F420-dependent DDJ96_RS13715 PF14748 Pyrroline-5-carboxylate reductase dimerisation DDJ96_RS13730 PF01966 HD domain DDJ96_RS13730 PF12072 Domain of unknown function (DUF3552) DDJ96_RS13730 PF00013 KH domain DDJ96_RS13735 PF00154 recA bacterial DNA recombination protein DDJ96_RS13740 PF02464 Competence-damaged protein DDJ96_RS13740 PF18146 Damage-inducible protein CinA KH domain DDJ96_RS13740 PF00994 Probable molybdopterin binding domain DDJ96_RS13745 PF01066 CDP-alcohol phosphatidyltransferase DDJ96_RS13750 PF13464 Domain of unknown function (DUF4115) DDJ96_RS13755 PF00675 Insulinase (Peptidase family M16) DDJ96_RS13755 PF05193 Peptidase M16 inactive domain DDJ96_RS13760 PF05193 Peptidase M16 inactive domain DDJ96_RS13765 PF01741 Large-conductance mechanosensitive channel, MscL DDJ96_RS13770 PF13673 Acetyltransferase (GNAT) domain DDJ96_RS13775 PF06257 Biofilm formation stimulator VEG DDJ96_RS13785 PF05991 YacP-like NYN domain DDJ96_RS13790 PF00588 SpoU rRNA Methylase family DDJ96_RS13790 PF08032 RNA 2'-O ribose methyltransferase substrate binding DDJ96_RS13795 PF00636 Ribonuclease III domain DDJ96_RS13800 PF01406 tRNA synthetases class I (C) catalytic domain DDJ96_RS13800 PF09190 DALR domain DDJ96_RS13805 PF06426 Serine acetyltransferase, N-terminal DDJ96_RS13805 PF00132 Bacterial transferase hexapeptide (six repeats) DDJ96_RS13810 PF00749 tRNA synthetases class I (E and Q), catalytic domain DDJ96_RS13820 PF18073 Rubredoxin metal binding domain DDJ96_RS13825 PF00692 dUTPase DDJ96_RS13830 PF00696 Amino acid kinase family DDJ96_RS13835 PF00171 Aldehyde dehydrogenase family DDJ96_RS13850 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DDJ96_RS13850 PF01476 LysM domain DDJ96_RS13855 PF01476 LysM domain DDJ96_RS13855 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DDJ96_RS13860 PF05368 NmrA-like family DDJ96_RS13865 PF02082 Transcriptional regulator DDJ96_RS13910 PF10140 WXG100 protein secretion system (Wss), protein YukC DDJ96_RS13930 PF06013 Proteins of 100 residues with WXG DDJ96_RS13945 PF01593 Flavin containing amine oxidoreductase DDJ96_RS13950 PF01207 Dihydrouridine synthase (Dus) DDJ96_RS13960 PF01061 ABC-2 type transporter DDJ96_RS13965 PF00005 ABC transporter DDJ96_RS13970 PF01624 MutS domain I DDJ96_RS13970 PF05188 MutS domain II DDJ96_RS13970 PF05192 MutS domain III DDJ96_RS13970 PF05190 MutS family domain IV DDJ96_RS13970 PF00488 MutS domain V DDJ96_RS13980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDJ96_RS13980 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDJ96_RS13990 PF02653 Branched-chain amino acid transport system / permease component DDJ96_RS13995 PF00005 ABC transporter DDJ96_RS14000 PF04616 Glycosyl hydrolases family 43 DDJ96_RS14000 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain DDJ96_RS14010 PF00480 ROK family DDJ96_RS14015 PF02779 Transketolase, pyrimidine binding domain DDJ96_RS14015 PF02780 Transketolase, C-terminal domain DDJ96_RS14015 PF00456 Transketolase, thiamine diphosphate binding domain DDJ96_RS14020 PF00834 Ribulose-phosphate 3 epimerase family DDJ96_RS14025 PF00923 Transaldolase/Fructose-6-phosphate aldolase DDJ96_RS14030 PF02378 Phosphotransferase system, EIIC DDJ96_RS14030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS14040 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DDJ96_RS14045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DDJ96_RS14065 PF00291 Pyridoxal-phosphate dependent enzyme DDJ96_RS14220 PF10668 Phage terminase small subunit DDJ96_RS14220 PF03592 Terminase small subunit DDJ96_RS14345 PF09669 Phage regulatory protein Rha (Phage_pRha) DDJ96_RS14345 PF03374 Phage antirepressor protein KilAC domain DDJ96_RS14375 PF02899 Phage integrase, N-terminal SAM-like domain DDJ96_RS14375 PF00589 Phage integrase family DDJ96_RS14380 PF00380 Ribosomal protein S9/S16 DDJ96_RS14385 PF00572 Ribosomal protein L13 DDJ96_RS14390 PF00764 Arginosuccinate synthase DDJ96_RS14395 PF00206 Lyase DDJ96_RS14395 PF14698 Argininosuccinate lyase C-terminal DDJ96_RS14410 PF00210 Ferritin-like domain DDJ96_RS14415 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DDJ96_RS14415 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DDJ96_RS14420 PF01478 Type IV leader peptidase family DDJ96_RS14420 PF06750 Bacterial Peptidase A24 N-terminal domain DDJ96_RS14425 PF01625 Peptide methionine sulfoxide reductase DDJ96_RS14430 PF04997 RNA polymerase Rpb1, domain 1 DDJ96_RS14430 PF00623 RNA polymerase Rpb1, domain 2 DDJ96_RS14430 PF04998 RNA polymerase Rpb1, domain 5 DDJ96_RS14430 PF04983 RNA polymerase Rpb1, domain 3 DDJ96_RS14430 PF05000 RNA polymerase Rpb1, domain 4 DDJ96_RS14435 PF04561 RNA polymerase Rpb2, domain 2 DDJ96_RS14435 PF04565 RNA polymerase Rpb2, domain 3 DDJ96_RS14435 PF04563 RNA polymerase beta subunit DDJ96_RS14435 PF10385 RNA polymerase beta subunit external 1 domain DDJ96_RS14435 PF00562 RNA polymerase Rpb2, domain 6 DDJ96_RS14435 PF04560 RNA polymerase Rpb2, domain 7 DDJ96_RS14445 PF08279 HTH domain DDJ96_RS14445 PF03099 Biotin/lipoate A/B protein ligase family DDJ96_RS14445 PF02237 Biotin protein ligase C terminal domain DDJ96_RS14470 PF00348 Polyprenyl synthetase DDJ96_RS14490 PF04205 FMN-binding domain DDJ96_RS14495 PF02424 ApbE family DDJ96_RS14560 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DDJ96_RS14560 PF07992 Pyridine nucleotide-disulphide oxidoreductase DDJ96_RS14565 PF01136 Peptidase family U32 DDJ96_RS14565 PF16325 Peptidase family U32 C-terminal domain DDJ96_RS14570 PF01136 Peptidase family U32 DDJ96_RS14575 PF07724 AAA domain (Cdc48 subfamily) DDJ96_RS14575 PF00004 ATPase family associated with various cellular activities (AAA) DDJ96_RS14575 PF17871 AAA lid domain DDJ96_RS14575 PF10431 C-terminal, D2-small domain, of ClpB protein DDJ96_RS14575 PF02861 Clp amino terminal domain, pathogenicity island component DDJ96_RS14580 PF05848 CtsR N-terminal HTH domain DDJ96_RS14580 PF17727 CtsR C-terminal dimerization domain DDJ96_RS14650 PF00486 Transcriptional regulatory protein, C terminal DDJ96_RS14650 PF00072 Response regulator receiver domain DDJ96_RS14655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS14655 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS14660 PF02403 Seryl-tRNA synthetase N-terminal domain DDJ96_RS14660 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DDJ96_RS14665 PF00478 IMP dehydrogenase / GMP reductase domain DDJ96_RS14665 PF00571 CBS domain DDJ96_RS14680 PF06071 Protein of unknown function (DUF933) DDJ96_RS14680 PF01926 50S ribosome-binding GTPase DDJ96_RS14685 PF06107 Bacterial protein of unknown function (DUF951) DDJ96_RS14690 PF02195 ParB-like nuclease domain DDJ96_RS14690 PF17762 HTH domain found in ParB protein DDJ96_RS14695 PF13614 AAA domain DDJ96_RS14700 PF02527 rRNA small subunit methyltransferase G DDJ96_RS14720 PF01134 Glucose inhibited division protein A DDJ96_RS14720 PF13932 GidA associated domain DDJ96_RS14725 PF01926 50S ribosome-binding GTPase DDJ96_RS14725 PF10396 GTP-binding protein TrmE N-terminus DDJ96_RS14725 PF12631 MnmE helical domain DDJ96_RS14735 PF01424 R3H domain DDJ96_RS14735 PF14804 Jag N-terminus DDJ96_RS14740 PF02096 60Kd inner membrane protein DDJ96_RS14745 PF00825 Ribonuclease P DDJ96_RS14750 PF00468 Ribosomal protein L34 DDJ96_RS14815 PF04203 Sortase domain DDJ96_RS14955 PF03432 Relaxase/Mobilisation nuclease domain DDJ96_RS15015 PF00239 Resolvase, N terminal domain DDJ96_RS15015 PF02796 Helix-turn-helix domain of resolvase DDJ96_RS15030 PF11798 IMS family HHH motif DDJ96_RS15030 PF11799 impB/mucB/samB family C-terminal domain DDJ96_RS15030 PF00817 impB/mucB/samB family DDJ96_RS15055 PF13614 AAA domain DDJ96_RS15060 PF08708 Primase C terminal 1 (PriCT-1) DDJ96_RS15075 PF00672 HAMP domain DDJ96_RS15075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DDJ96_RS15075 PF00512 His Kinase A (phospho-acceptor) domain DDJ96_RS15110 PF02661 Fic/DOC family DDJ96_RS15120 PF00589 Phage integrase family DDJ96_RS15120 PF13495 Phage integrase, N-terminal SAM-like domain DDJ96_RS15135 PF13614 AAA domain DDJ96_RS15145 PF08708 Primase C terminal 1 (PriCT-1) DDJ96_RS15205 PF03432 Relaxase/Mobilisation nuclease domain DDJ96_RS15225 PF00544 Pectate lyase DDJ96_RS15230 PF01638 HxlR-like helix-turn-helix DDJ96_RS15235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DDJ96_RS15295 PF00313 'Cold-shock' DNA-binding domain DDJ96_RS15305 PF02796 Helix-turn-helix domain of resolvase DDJ96_RS15305 PF00239 Resolvase, N terminal domain DDJ96_RS15310 PF00239 Resolvase, N terminal domain DDJ96_RS15310 PF02796 Helix-turn-helix domain of resolvase DDJ96_RS15330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion DDJ96_RS15335 PF00005 ABC transporter DDJ96_RS15340 PF02687 FtsX-like permease family DDJ96_RS15340 PF12704 MacB-like periplasmic core domain