SR35_RS00050 SM00852 Probable molybdopterin binding domain SR35_RS00075 SM00271 DnaJ molecular chaperone homology domain SR35_RS00140 SM00904 Riboflavin kinase SR35_RS00185 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SR35_RS00190 SM00851 MGS-like domain SR35_RS00190 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SR35_RS00235 SM00893 Electron transfer flavoprotein domain SR35_RS00240 SM00893 Electron transfer flavoprotein domain SR35_RS00285 SM00650 Ribosomal RNA adenine dimethylases SR35_RS00305 SM00271 DnaJ molecular chaperone homology domain SR35_RS00320 SM00487 DEAD-like helicases superfamily SR35_RS00320 SM00490 helicase superfamily c-terminal domain SR35_RS00325 SM00486 DNA polymerase type-B family SR35_RS00330 SM01007 Class II Aldolase and Adducin N-terminal domain SR35_RS00345 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS00355 SM00382 ATPases associated with a variety of cellular activities SR35_RS00395 SM01329 SR35_RS00395 SR35_RS00400 SM00917 LeuA allosteric (dimerisation) domain SR35_RS00430 SM00354 helix_turn _helix lactose operon repressor SR35_RS00500 SM00842 Cell division protein FtsA SR35_RS00505 SM00864 Tubulin/FtsZ family, GTPase domain SR35_RS00505 SM00865 Tubulin/FtsZ family, C-terminal domain SR35_RS00520 SM00957 SecA DEAD-like domain SR35_RS00520 SM00958 SecA preprotein cross-linking domain SR35_RS00550 SM01240 SR35_RS00550 SR35_RS00580 SM00644 SR35_RS00580 SR35_RS00595 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS00595 SM00895 SR35_RS00595 SR35_RS00650 SM00564 beta-propeller repeat SR35_RS00660 SM00947 Carbonic anhydrase SR35_RS00665 SM00382 ATPases associated with a variety of cellular activities SR35_RS00770 SM00487 DEAD-like helicases superfamily SR35_RS00770 SM00490 helicase superfamily c-terminal domain SR35_RS00770 SM00847 Helicase associated domain (HA2) Add an annotation SR35_RS00790 SM00382 ATPases associated with a variety of cellular activities SR35_RS00835 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SR35_RS00840 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SR35_RS00865 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SR35_RS00910 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SR35_RS00920 SM00935 Outer membrane protein (OmpH-like) SR35_RS00950 SM00481 DNA polymerase alpha chain like domain SR35_RS00970 SM00977 TilS substrate C-terminal domain SR35_RS00985 SM01322 SR35_RS00985 SR35_RS01030 SM00382 ATPases associated with a variety of cellular activities SR35_RS01030 SM00930 SR35_RS01030 SR35_RS01090 SM00257 Lysin motif SR35_RS01095 SM00849 Metallo-beta-lactamase superfamily SR35_RS01110 SM00479 SR35_RS01110 SR35_RS01185 SM01321 SR35_RS01185 SR35_RS01250 SM00382 ATPases associated with a variety of cellular activities SR35_RS01285 SM01130 SR35_RS01285 SR35_RS01305 SM00346 helix_turn_helix isocitrate lyase regulation SR35_RS01370 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SR35_RS01375 SM01092 CO dehydrogenase flavoprotein C-terminal domain SR35_RS01420 SM00421 helix_turn_helix, Lux Regulon SR35_RS01460 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS01480 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS01535 SM00052 Putative diguanylate phosphodiesterase SR35_RS01535 SM00421 helix_turn_helix, Lux Regulon SR35_RS01550 SM00248 ankyrin repeats SR35_RS01585 SM00829 Enoylreductase SR35_RS01610 SM00382 ATPases associated with a variety of cellular activities SR35_RS01650 SM00947 Carbonic anhydrase SR35_RS01655 SM01116 SR35_RS01655 SR35_RS01665 SM01266 SR35_RS01665 SR35_RS01685 SM01038 Beta galactosidase small chain SR35_RS01695 SM00346 helix_turn_helix isocitrate lyase regulation SR35_RS01720 SM00859 Semialdehyde dehydrogenase, NAD binding domain SR35_RS01745 SM00829 Enoylreductase SR35_RS01790 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS01795 SM00382 ATPases associated with a variety of cellular activities SR35_RS01810 SM01004 Delta-aminolevulinic acid dehydratase SR35_RS01835 SM00869 Autotransporter beta-domain SR35_RS01890 SM00098 Alkaline phosphatase homologues SR35_RS01900 SM00267 diguanylate cyclase SR35_RS01970 SM00448 cheY-homologous receiver domain SR35_RS01970 SM00862 Transcriptional regulatory protein, C terminal SR35_RS01975 SM00091 PAS domain SR35_RS01975 SM00387 Histidine kinase-like ATPases SR35_RS01975 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS01990 SM00642 Alpha-amylase domain SR35_RS02010 SM01323 SR35_RS02010 SR35_RS02025 SM00507 HNH nucleases SR35_RS02080 SM00861 Transketolase, pyrimidine binding domain SR35_RS02095 SM00981 SR35_RS02095 SR35_RS02175 SM00382 ATPases associated with a variety of cellular activities SR35_RS02175 SM00994 ClpX C4-type zinc finger SR35_RS02175 SM01086 C-terminal, D2-small domain, of ClpB protein SR35_RS02180 SM00382 ATPases associated with a variety of cellular activities SR35_RS02180 SM00464 Found in ATP-dependent protease La (LON) SR35_RS02185 SM00411 bacterial (prokaryotic) histone like domain SR35_RS02195 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SR35_RS02220 SM00344 helix_turn_helix ASNC type SR35_RS02225 SM00382 ATPases associated with a variety of cellular activities SR35_RS02230 SM00382 ATPases associated with a variety of cellular activities SR35_RS02235 SM00938 Nitrogen regulatory protein P-II SR35_RS02265 SM00052 Putative diguanylate phosphodiesterase SR35_RS02275 SM01266 SR35_RS02275 SR35_RS02335 SM00382 ATPases associated with a variety of cellular activities SR35_RS02345 SM00493 SR35_RS02345 SR35_RS02350 SM00387 Histidine kinase-like ATPases SR35_RS02400 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS02420 SM00422 helix_turn_helix, mercury resistance SR35_RS02430 SM00244 prohibitin homologues SR35_RS02435 SM00382 ATPases associated with a variety of cellular activities SR35_RS02450 SM00822 SR35_RS02450 SR35_RS02460 SM00382 ATPases associated with a variety of cellular activities SR35_RS02495 SM00450 Rhodanese Homology Domain SR35_RS02510 SM00346 helix_turn_helix isocitrate lyase regulation SR35_RS02590 SM01001 AIR carboxylase SR35_RS02605 SM00840 SR35_RS02605 SR35_RS02650 SM00421 helix_turn_helix, Lux Regulon SR35_RS02650 SM00448 cheY-homologous receiver domain SR35_RS02705 SM00857 Resolvase, N terminal domain SR35_RS02715 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS02800 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS02815 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS02825 SM00028 Tetratricopeptide repeats SR35_RS02835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS02835 SM00387 Histidine kinase-like ATPases SR35_RS02835 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS02840 SM00448 cheY-homologous receiver domain SR35_RS02840 SM00862 Transcriptional regulatory protein, C terminal SR35_RS02925 SM00923 MbtH-like protein SR35_RS02930 SM00823 Phosphopantetheine attachment site SR35_RS02930 SM00824 Thioesterase SR35_RS02940 SM00382 ATPases associated with a variety of cellular activities SR35_RS02980 SM00822 SR35_RS02980 SR35_RS03010 SM00470 ParB-like nuclease domain SR35_RS03095 SM00764 Citrate lyase ligase C-terminal domain SR35_RS03100 SM00091 PAS domain SR35_RS03100 SM00387 Histidine kinase-like ATPases SR35_RS03105 SM00448 cheY-homologous receiver domain SR35_RS03120 SM00357 Cold shock protein domain SR35_RS03140 SM00729 Elongator protein 3, MiaB family, Radical SAM SR35_RS03165 SM00936 Penicillin-binding protein 5, C-terminal domain SR35_RS03195 SM00855 Phosphoglycerate mutase family SR35_RS03225 SM00671 Sel1-like repeats. SR35_RS03235 SM00271 DnaJ molecular chaperone homology domain SR35_RS03240 SM00671 Sel1-like repeats. SR35_RS03265 SM00382 ATPases associated with a variety of cellular activities SR35_RS03280 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS03295 SM00116 Domain in cystathionine beta-synthase and other proteins. SR35_RS03295 SM01091 Transporter associated domain SR35_RS03310 SM00729 Elongator protein 3, MiaB family, Radical SAM SR35_RS03470 SM00448 cheY-homologous receiver domain SR35_RS03470 SM00862 Transcriptional regulatory protein, C terminal SR35_RS03475 SM00387 Histidine kinase-like ATPases SR35_RS03475 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS03560 SM00796 Allophanate hydrolase subunit 1 SR35_RS03565 SM00797 Allophanate hydrolase subunit 2 SR35_RS03575 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SR35_RS03575 SM01232 SR35_RS03575 SR35_RS03640 SM00861 Transketolase, pyrimidine binding domain SR35_RS03655 SM00881 CoA binding domain SR35_RS03660 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS03660 SM00866 SR35_RS03660 SR35_RS03670 SM00872 Alpha mannosidase, middle domain SR35_RS03800 SM00855 Phosphoglycerate mutase family SR35_RS03825 SM00382 ATPases associated with a variety of cellular activities SR35_RS03850 SM00382 ATPases associated with a variety of cellular activities SR35_RS03900 SM00729 Elongator protein 3, MiaB family, Radical SAM SR35_RS03900 SM00876 Biotin and Thiamin Synthesis associated domain SR35_RS03920 SM00487 DEAD-like helicases superfamily SR35_RS03920 SM00490 helicase superfamily c-terminal domain SR35_RS03935 SM00729 Elongator protein 3, MiaB family, Radical SAM SR35_RS03940 SM00852 Probable molybdopterin binding domain SR35_RS03980 SM00155 Phospholipase D. Active site motifs. SR35_RS04005 SM00382 ATPases associated with a variety of cellular activities SR35_RS04020 SM00487 DEAD-like helicases superfamily SR35_RS04020 SM00490 helicase superfamily c-terminal domain SR35_RS04030 SM00487 DEAD-like helicases superfamily SR35_RS04030 SM00488 SR35_RS04030 SR35_RS04030 SM00491 SR35_RS04030 SR35_RS04055 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. SR35_RS04080 SM00382 ATPases associated with a variety of cellular activities SR35_RS04090 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS04090 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SR35_RS04125 SM00529 Helix-turn-helix diphteria tox regulatory element SR35_RS04140 SM00382 ATPases associated with a variety of cellular activities SR35_RS04175 SM00852 Probable molybdopterin binding domain SR35_RS04185 SM00382 ATPases associated with a variety of cellular activities SR35_RS04205 SM00052 Putative diguanylate phosphodiesterase SR35_RS04210 SM00267 diguanylate cyclase SR35_RS04215 SM00729 Elongator protein 3, MiaB family, Radical SAM SR35_RS04235 SM00936 Penicillin-binding protein 5, C-terminal domain SR35_RS04240 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS04240 SM01134 SR35_RS04240 SR35_RS04245 SM00014 Acid phosphatase homologues SR35_RS04320 SM00382 ATPases associated with a variety of cellular activities SR35_RS04345 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS04345 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SR35_RS04360 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS04360 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SR35_RS04365 SM00382 ATPases associated with a variety of cellular activities SR35_RS04380 SM00644 SR35_RS04380 SR35_RS04445 SM00382 ATPases associated with a variety of cellular activities SR35_RS04450 SM00357 Cold shock protein domain SR35_RS04460 SM00382 ATPases associated with a variety of cellular activities SR35_RS04460 SM01086 C-terminal, D2-small domain, of ClpB protein SR35_RS04470 SM00316 Ribosomal protein S1-like RNA-binding domain SR35_RS04480 SM00382 ATPases associated with a variety of cellular activities SR35_RS04485 SM00382 ATPases associated with a variety of cellular activities SR35_RS04495 SM00344 helix_turn_helix ASNC type SR35_RS04500 SM00843 SR35_RS04500 SR35_RS04510 SM00382 ATPases associated with a variety of cellular activities SR35_RS04520 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS04605 SM00316 Ribosomal protein S1-like RNA-binding domain SR35_RS04610 SM00411 bacterial (prokaryotic) histone like domain SR35_RS04615 SM00849 Metallo-beta-lactamase superfamily SR35_RS04620 SM00382 ATPases associated with a variety of cellular activities SR35_RS04685 SM00849 Metallo-beta-lactamase superfamily SR35_RS04720 SM00382 ATPases associated with a variety of cellular activities SR35_RS04735 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS04795 SM00981 SR35_RS04795 SR35_RS04800 SM00382 ATPases associated with a variety of cellular activities SR35_RS04875 SM00851 MGS-like domain SR35_RS04890 SM00881 CoA binding domain SR35_RS04895 SM00992 Hemimethylated DNA-binding protein YccV like SR35_RS04900 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SR35_RS04980 SM00226 Low molecular weight phosphatase family SR35_RS05020 SM00357 Cold shock protein domain SR35_RS05025 SM00357 Cold shock protein domain SR35_RS05055 SM00448 cheY-homologous receiver domain SR35_RS05055 SM00862 Transcriptional regulatory protein, C terminal SR35_RS05080 SM00271 DnaJ molecular chaperone homology domain SR35_RS05120 SM00903 Flavin reductase like domain SR35_RS05215 SM00028 Tetratricopeptide repeats SR35_RS05220 SM00267 diguanylate cyclase SR35_RS05260 SM00481 DNA polymerase alpha chain like domain SR35_RS05290 SM00421 helix_turn_helix, Lux Regulon SR35_RS05325 SM00506 Appr-1"-p processing enzyme SR35_RS05330 SM00155 Phospholipase D. Active site motifs. SR35_RS05385 SM00450 Rhodanese Homology Domain SR35_RS05390 SM00867 YceI-like domain SR35_RS05470 SM00858 SR35_RS05470 SR35_RS05515 SM00047 Lysozyme subfamily 2 SR35_RS05530 SM00316 Ribosomal protein S1-like RNA-binding domain SR35_RS05540 SM00363 S4 RNA-binding domain SR35_RS05570 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SR35_RS05575 SM00822 SR35_RS05575 SR35_RS05585 SM00825 Beta-ketoacyl synthase SR35_RS05675 SM00257 Lysin motif SR35_RS05680 SM00487 DEAD-like helicases superfamily SR35_RS05680 SM00490 helicase superfamily c-terminal domain SR35_RS05680 SM00982 SR35_RS05680 SR35_RS05680 SM01058 CarD-like/TRCF domain SR35_RS05695 SM00382 ATPases associated with a variety of cellular activities SR35_RS05740 SM00382 ATPases associated with a variety of cellular activities SR35_RS05755 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. SR35_RS05760 SM00387 Histidine kinase-like ATPases SR35_RS05765 SM00448 cheY-homologous receiver domain SR35_RS05765 SM00862 Transcriptional regulatory protein, C terminal SR35_RS05795 SM01329 SR35_RS05795 SR35_RS05895 SM00857 Resolvase, N terminal domain SR35_RS05900 SM00507 HNH nucleases SR35_RS05920 SM00422 helix_turn_helix, mercury resistance SR35_RS05925 SM00052 Putative diguanylate phosphodiesterase SR35_RS05925 SM01034 Sensors of blue-light using FAD SR35_RS05950 SM00052 Putative diguanylate phosphodiesterase SR35_RS06060 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS06075 SM01005 Alanine racemase, C-terminal domain SR35_RS06080 SM01091 Transporter associated domain SR35_RS06120 SM01120 SR35_RS06120 SR35_RS06130 SM00091 PAS domain SR35_RS06130 SM00382 ATPases associated with a variety of cellular activities SR35_RS06135 SM00869 Autotransporter beta-domain SR35_RS06165 SM01400 SR35_RS06165 SR35_RS06185 SM00937 SR35_RS06185 SR35_RS06250 SM00421 helix_turn_helix, Lux Regulon SR35_RS06250 SM00448 cheY-homologous receiver domain SR35_RS06255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS06255 SM00387 Histidine kinase-like ATPases SR35_RS06270 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS06320 SM00448 cheY-homologous receiver domain SR35_RS06330 SM00528 Domain in histone-like proteins of HNS family SR35_RS06375 SM00382 ATPases associated with a variety of cellular activities SR35_RS06380 SM00382 ATPases associated with a variety of cellular activities SR35_RS06390 SM00155 Phospholipase D. Active site motifs. SR35_RS06475 SM00481 DNA polymerase alpha chain like domain SR35_RS06490 SM00363 S4 RNA-binding domain SR35_RS06500 SM00822 SR35_RS06500 SR35_RS06525 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SR35_RS06525 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SR35_RS06525 SM00493 SR35_RS06525 SR35_RS06560 SM00014 Acid phosphatase homologues SR35_RS06570 SM00028 Tetratricopeptide repeats SR35_RS06575 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SR35_RS06590 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS06590 SM01134 SR35_RS06590 SR35_RS06600 SM00052 Putative diguanylate phosphodiesterase SR35_RS06600 SM00091 PAS domain SR35_RS06600 SM00267 diguanylate cyclase SR35_RS06610 SM00357 Cold shock protein domain SR35_RS06610 SM00955 SR35_RS06610 SR35_RS06630 SM00382 ATPases associated with a variety of cellular activities SR35_RS06635 SM00382 ATPases associated with a variety of cellular activities SR35_RS06670 SM01230 SR35_RS06670 SR35_RS06680 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS06700 SM00382 ATPases associated with a variety of cellular activities SR35_RS06725 SM00450 Rhodanese Homology Domain SR35_RS06730 SM00642 Alpha-amylase domain SR35_RS06785 SM00354 helix_turn _helix lactose operon repressor SR35_RS06800 SM00091 PAS domain SR35_RS06800 SM00382 ATPases associated with a variety of cellular activities SR35_RS06810 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SR35_RS06865 SM00100 Cyclic nucleotide-monophosphate binding domain SR35_RS06865 SM00419 helix_turn_helix, cAMP Regulatory protein SR35_RS06905 SM00463 Small MutS-related domain SR35_RS06910 SM00091 PAS domain SR35_RS06910 SM00267 diguanylate cyclase SR35_RS06925 SM00487 DEAD-like helicases superfamily SR35_RS06925 SM00490 helicase superfamily c-terminal domain SR35_RS06945 SM00890 Domain of unknown function SR35_RS06980 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS07115 SM00195 Dual specificity phosphatase, catalytic domain SR35_RS07115 SM00404 Protein tyrosine phosphatase, catalytic domain motif SR35_RS07125 SM00382 ATPases associated with a variety of cellular activities SR35_RS07125 SM00487 DEAD-like helicases superfamily SR35_RS07125 SM00490 helicase superfamily c-terminal domain SR35_RS07125 SM00847 Helicase associated domain (HA2) Add an annotation SR35_RS07170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SR35_RS07170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS07170 SM00319 Homologues of the ligand binding domain of Tar SR35_RS07180 SM01150 SR35_RS07180 SR35_RS07230 SM01321 SR35_RS07230 SR35_RS07245 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS07265 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS07270 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS07280 SM00382 ATPases associated with a variety of cellular activities SR35_RS07325 SM00829 Enoylreductase SR35_RS07330 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS07330 SM00895 SR35_RS07330 SR35_RS07385 SM00903 Flavin reductase like domain SR35_RS07415 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS07440 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS07460 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS07465 SM00829 Enoylreductase SR35_RS07470 SM00919 Malic enzyme, NAD binding domain SR35_RS07470 SM01274 SR35_RS07470 SR35_RS07490 SM00382 ATPases associated with a variety of cellular activities SR35_RS07495 SM00382 ATPases associated with a variety of cellular activities SR35_RS07520 SM00052 Putative diguanylate phosphodiesterase SR35_RS07520 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SR35_RS07520 SM00091 PAS domain SR35_RS07520 SM00267 diguanylate cyclase SR35_RS07525 SM00267 diguanylate cyclase SR35_RS07560 SM00382 ATPases associated with a variety of cellular activities SR35_RS07575 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS07625 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS07630 SM00869 Autotransporter beta-domain SR35_RS07650 SM00382 ATPases associated with a variety of cellular activities SR35_RS07670 SM01133 SR35_RS07670 SR35_RS07700 SM00267 diguanylate cyclase SR35_RS07740 SM00347 helix_turn_helix multiple antibiotic resistance protein SR35_RS07745 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS07770 SM00267 diguanylate cyclase SR35_RS07795 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS07795 SM00895 SR35_RS07795 SR35_RS07820 SM00857 Resolvase, N terminal domain SR35_RS07860 SM00357 Cold shock protein domain SR35_RS07885 SM00357 Cold shock protein domain SR35_RS07890 SM00357 Cold shock protein domain SR35_RS07900 SM00507 HNH nucleases SR35_RS07945 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS07995 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SR35_RS08035 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS08040 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS08120 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SR35_RS08120 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SR35_RS08145 SM00448 cheY-homologous receiver domain SR35_RS08145 SM00862 Transcriptional regulatory protein, C terminal SR35_RS08150 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS08150 SM00387 Histidine kinase-like ATPases SR35_RS08150 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS08205 SM00354 helix_turn _helix lactose operon repressor SR35_RS08265 SM00900 SR35_RS08265 SR35_RS08275 SM00478 endonuclease III SR35_RS08275 SM00525 SR35_RS08275 SR35_RS08300 SM00363 S4 RNA-binding domain SR35_RS08325 SM00347 helix_turn_helix multiple antibiotic resistance protein SR35_RS08375 SM00479 SR35_RS08375 SR35_RS08380 SM00382 ATPases associated with a variety of cellular activities SR35_RS08380 SM00487 DEAD-like helicases superfamily SR35_RS08380 SM00490 helicase superfamily c-terminal domain SR35_RS08410 SM00354 helix_turn _helix lactose operon repressor SR35_RS08485 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SR35_RS08510 SM00257 Lysin motif SR35_RS08530 SM00382 ATPases associated with a variety of cellular activities SR35_RS08590 SM00882 Coenzyme A transferase SR35_RS08600 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS08610 SM00893 Electron transfer flavoprotein domain SR35_RS08615 SM00893 Electron transfer flavoprotein domain SR35_RS08675 SM00382 ATPases associated with a variety of cellular activities SR35_RS08690 SM00411 bacterial (prokaryotic) histone like domain SR35_RS08695 SM00873 B3/4 domain SR35_RS08695 SM00874 tRNA synthetase B5 domain SR35_RS08695 SM00896 Ferredoxin-fold anticodon binding domain SR35_RS08725 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SR35_RS08790 SM01060 SR35_RS08790 SR35_RS08805 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS08840 SM00465 GIY-YIG type nucleases (URI domain) SR35_RS08915 SM00382 ATPases associated with a variety of cellular activities SR35_RS08920 SM00450 Rhodanese Homology Domain SR35_RS08940 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SR35_RS08950 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SR35_RS08950 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SR35_RS08950 SM00493 SR35_RS08950 SR35_RS08980 SM00870 SR35_RS08980 SR35_RS08995 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS08995 SM01134 SR35_RS08995 SR35_RS09015 SM00829 Enoylreductase SR35_RS09040 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SR35_RS09060 SM00763 PrkA AAA domain SR35_RS09070 SM00267 diguanylate cyclase SR35_RS09075 SM00267 diguanylate cyclase SR35_RS09095 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS09115 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SR35_RS09115 SM00267 diguanylate cyclase SR35_RS09150 SM01329 SR35_RS09150 SR35_RS09170 SM00341 Helicase and RNase D C-terminal SR35_RS09170 SM00474 3'-5' exonuclease SR35_RS09190 SM00487 DEAD-like helicases superfamily SR35_RS09190 SM00491 SR35_RS09190 SR35_RS09225 SM00052 Putative diguanylate phosphodiesterase SR35_RS09230 SM01091 Transporter associated domain SR35_RS09275 SM00357 Cold shock protein domain SR35_RS09305 SM00346 helix_turn_helix isocitrate lyase regulation SR35_RS09320 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SR35_RS09320 SM00245 tail specific protease SR35_RS09325 SM00945 ProQ/FINO family SR35_RS09330 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SR35_RS09395 SM00479 SR35_RS09395 SR35_RS09465 SM00257 Lysin motif SR35_RS09475 SM00382 ATPases associated with a variety of cellular activities SR35_RS09485 SM00382 ATPases associated with a variety of cellular activities SR35_RS09490 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SR35_RS09565 SM00836 DALR anticodon binding domain SR35_RS09565 SM01016 Arginyl tRNA synthetase N terminal dom SR35_RS09595 SM00448 cheY-homologous receiver domain SR35_RS09600 SM00448 cheY-homologous receiver domain SR35_RS09605 SM00138 Methyltransferase, chemotaxis proteins SR35_RS09610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SR35_RS09610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS09610 SM00319 Homologues of the ligand binding domain of Tar SR35_RS09615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SR35_RS09615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS09615 SM00319 Homologues of the ligand binding domain of Tar SR35_RS09620 SM00260 Two component signalling adaptor domain SR35_RS09625 SM00073 Histidine Phosphotransfer domain SR35_RS09625 SM00260 Two component signalling adaptor domain SR35_RS09625 SM00387 Histidine kinase-like ATPases SR35_RS09625 SM01231 SR35_RS09625 SR35_RS09670 SM00382 ATPases associated with a variety of cellular activities SR35_RS09740 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SR35_RS09740 SM00465 GIY-YIG type nucleases (URI domain) SR35_RS09745 SM00421 helix_turn_helix, Lux Regulon SR35_RS09745 SM00448 cheY-homologous receiver domain SR35_RS09760 SM00421 helix_turn_helix, Lux Regulon SR35_RS09765 SM00382 ATPases associated with a variety of cellular activities SR35_RS09780 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS09780 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SR35_RS09815 SM00642 Alpha-amylase domain SR35_RS09880 SM00382 ATPases associated with a variety of cellular activities SR35_RS09930 SM00421 helix_turn_helix, Lux Regulon SR35_RS09950 SM00267 diguanylate cyclase SR35_RS09980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SR35_RS10005 SM00387 Histidine kinase-like ATPases SR35_RS10005 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS10010 SM00448 cheY-homologous receiver domain SR35_RS10010 SM00862 Transcriptional regulatory protein, C terminal SR35_RS10015 SM00095 Transthyretin SR35_RS10060 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins SR35_RS10060 SM00634 Bacterial Ig-like domain (group 1) SR35_RS10165 SM00869 Autotransporter beta-domain SR35_RS10220 SM00871 Bacterial transcription activator, effector binding domain SR35_RS10225 SM00936 Penicillin-binding protein 5, C-terminal domain SR35_RS10230 SM00479 SR35_RS10230 SR35_RS10315 SM00984 UDP binding domain SR35_RS10320 SM01350 SR35_RS10320 SR35_RS10480 SM00226 Low molecular weight phosphatase family SR35_RS10490 SM00116 Domain in cystathionine beta-synthase and other proteins. SR35_RS10490 SM01091 Transporter associated domain SR35_RS10510 SM00052 Putative diguanylate phosphodiesterase SR35_RS10510 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SR35_RS10510 SM00091 PAS domain SR35_RS10510 SM00267 diguanylate cyclase SR35_RS10515 SM00478 endonuclease III SR35_RS10515 SM01009 AlkA N-terminal domain SR35_RS10545 SM00327 von Willebrand factor (vWF) type A domain SR35_RS10570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS10570 SM00387 Histidine kinase-like ATPases SR35_RS10570 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS10575 SM00448 cheY-homologous receiver domain SR35_RS10575 SM00862 Transcriptional regulatory protein, C terminal SR35_RS10600 SM00046 Diacylglycerol kinase catalytic domain (presumed) SR35_RS10605 SM01134 SR35_RS10605 SR35_RS10620 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS10625 SM00829 Enoylreductase SR35_RS10655 SM01133 SR35_RS10655 SR35_RS10675 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS10675 SM00866 SR35_RS10675 SR35_RS10680 SM00641 Glycosyl hydrolases family 25 SR35_RS10750 SM00773 Proposed nucleic acid binding domain SR35_RS10770 SM00382 ATPases associated with a variety of cellular activities SR35_RS10780 SM00327 von Willebrand factor (vWF) type A domain SR35_RS10800 SM00448 cheY-homologous receiver domain SR35_RS10800 SM00850 LytTr DNA-binding domain SR35_RS10805 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SR35_RS10810 SM00422 helix_turn_helix, mercury resistance SR35_RS10825 SM00382 ATPases associated with a variety of cellular activities SR35_RS10840 SM01217 SR35_RS10840 SR35_RS10935 SM00382 ATPases associated with a variety of cellular activities SR35_RS10945 SM00354 helix_turn _helix lactose operon repressor SR35_RS10995 SM00518 AP endonuclease family 2 SR35_RS11015 SM00100 Cyclic nucleotide-monophosphate binding domain SR35_RS11060 SM00841 Elongation factor P, C-terminal SR35_RS11060 SM01185 SR35_RS11060 SR35_RS11070 SM00833 Cobalamin synthesis protein cobW C-terminal domain SR35_RS11075 SM00014 Acid phosphatase homologues SR35_RS11085 SM00052 Putative diguanylate phosphodiesterase SR35_RS11105 SM00382 ATPases associated with a variety of cellular activities SR35_RS11120 SM00363 S4 RNA-binding domain SR35_RS11125 SM00487 DEAD-like helicases superfamily SR35_RS11125 SM00490 helicase superfamily c-terminal domain SR35_RS11155 SM00869 Autotransporter beta-domain SR35_RS11170 SM00421 helix_turn_helix, Lux Regulon SR35_RS11170 SM00448 cheY-homologous receiver domain SR35_RS11210 SM00382 ATPases associated with a variety of cellular activities SR35_RS11235 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS11265 SM00382 ATPases associated with a variety of cellular activities SR35_RS11275 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS11300 SM00387 Histidine kinase-like ATPases SR35_RS11305 SM00421 helix_turn_helix, Lux Regulon SR35_RS11305 SM00448 cheY-homologous receiver domain SR35_RS11310 SM00387 Histidine kinase-like ATPases SR35_RS11310 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS11310 SM00448 cheY-homologous receiver domain SR35_RS11315 SM00091 PAS domain SR35_RS11315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS11315 SM00387 Histidine kinase-like ATPases SR35_RS11315 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS11320 SM00382 ATPases associated with a variety of cellular activities SR35_RS11320 SM00448 cheY-homologous receiver domain SR35_RS11325 SM00882 Coenzyme A transferase SR35_RS11330 SM00882 Coenzyme A transferase SR35_RS11360 SM01359 SR35_RS11360 SR35_RS11360 SM01360 SR35_RS11360 SR35_RS11375 SM00434 DNA Topoisomerase IV SR35_RS11385 SM00869 Autotransporter beta-domain SR35_RS11465 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SR35_RS11470 SM00346 helix_turn_helix isocitrate lyase regulation SR35_RS11475 SM00852 Probable molybdopterin binding domain SR35_RS11540 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SR35_RS11575 SM00849 Metallo-beta-lactamase superfamily SR35_RS11585 SM00327 von Willebrand factor (vWF) type A domain SR35_RS11650 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS11650 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SR35_RS11655 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SR35_RS11690 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SR35_RS11755 SM00905 Dihydroneopterin aldolase SR35_RS11770 SM00382 ATPases associated with a variety of cellular activities SR35_RS11785 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS11790 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS11835 SM00859 Semialdehyde dehydrogenase, NAD binding domain SR35_RS11855 SM00825 Beta-ketoacyl synthase SR35_RS11895 SM00463 Small MutS-related domain SR35_RS12085 SM00421 helix_turn_helix, Lux Regulon SR35_RS12085 SM00448 cheY-homologous receiver domain SR35_RS12090 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS12090 SM00073 Histidine Phosphotransfer domain SR35_RS12090 SM00387 Histidine kinase-like ATPases SR35_RS12090 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS12090 SM00448 cheY-homologous receiver domain SR35_RS12145 SM00387 Histidine kinase-like ATPases SR35_RS12150 SM00448 cheY-homologous receiver domain SR35_RS12150 SM00850 LytTr DNA-binding domain SR35_RS12155 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS12220 SM00052 Putative diguanylate phosphodiesterase SR35_RS12220 SM00267 diguanylate cyclase SR35_RS12310 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SR35_RS12310 SM00292 breast cancer carboxy-terminal domain SR35_RS12310 SM00532 Ligase N family SR35_RS12315 SM00771 ZipA, C-terminal domain (FtsZ-binding) SR35_RS12355 SM00773 Proposed nucleic acid binding domain SR35_RS12365 SM00382 ATPases associated with a variety of cellular activities SR35_RS12385 SM00822 SR35_RS12385 SR35_RS12430 SM00646 SR35_RS12430 SR35_RS12440 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS12445 SM00877 SR35_RS12445 SR35_RS12450 SM00877 SR35_RS12450 SR35_RS12495 SM00877 SR35_RS12495 SR35_RS12520 SM00877 SR35_RS12520 SR35_RS12525 SM00919 Malic enzyme, NAD binding domain SR35_RS12525 SM01274 SR35_RS12525 SR35_RS12535 SM00861 Transketolase, pyrimidine binding domain SR35_RS12555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS12555 SM00387 Histidine kinase-like ATPases SR35_RS12615 SM01130 SR35_RS12615 SR35_RS12680 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SR35_RS12680 SM00382 ATPases associated with a variety of cellular activities SR35_RS12740 SM00052 Putative diguanylate phosphodiesterase SR35_RS12740 SM00267 diguanylate cyclase SR35_RS12770 SM00116 Domain in cystathionine beta-synthase and other proteins. SR35_RS12770 SM01240 SR35_RS12770 SR35_RS12790 SM00564 beta-propeller repeat SR35_RS12810 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS12820 SM00562 SR35_RS12820 SR35_RS12830 SM01359 SR35_RS12830 SR35_RS12830 SM01360 SR35_RS12830 SR35_RS12835 SM00450 Rhodanese Homology Domain SR35_RS12865 SM00271 DnaJ molecular chaperone homology domain SR35_RS12955 SM00829 Enoylreductase SR35_RS12965 SM00382 ATPases associated with a variety of cellular activities SR35_RS12975 SM00028 Tetratricopeptide repeats SR35_RS12995 SM00938 Nitrogen regulatory protein P-II SR35_RS13000 SM00382 ATPases associated with a variety of cellular activities SR35_RS13000 SM00448 cheY-homologous receiver domain SR35_RS13010 SM00387 Histidine kinase-like ATPases SR35_RS13010 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS13015 SM01211 SR35_RS13015 SR35_RS13020 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS13080 SM00358 Double-stranded RNA binding motif SR35_RS13080 SM00535 Ribonuclease III family SR35_RS13130 SM00487 DEAD-like helicases superfamily SR35_RS13130 SM00490 helicase superfamily c-terminal domain SR35_RS13155 SM00986 Uracil DNA glycosylase superfamily SR35_RS13155 SM00987 UreE urease accessory protein, C-terminal domain SR35_RS13160 SM00967 RNA 2'-O ribose methyltransferase substrate binding SR35_RS13175 SM01144 SR35_RS13175 SR35_RS13180 SM00881 CoA binding domain SR35_RS13185 SM00155 Phospholipase D. Active site motifs. SR35_RS13225 SM00382 ATPases associated with a variety of cellular activities SR35_RS13225 SM01086 C-terminal, D2-small domain, of ClpB protein SR35_RS13235 SM00363 S4 RNA-binding domain SR35_RS13255 SM00830 Chorismate mutase type II SR35_RS13260 SM00830 Chorismate mutase type II SR35_RS13280 SM00267 diguanylate cyclase SR35_RS13310 SM00382 ATPases associated with a variety of cellular activities SR35_RS13310 SM00962 SRP54-type protein, GTPase domain SR35_RS13310 SM00963 SRP54-type protein, helical bundle domain SR35_RS13320 SM01091 Transporter associated domain SR35_RS13390 SM00487 DEAD-like helicases superfamily SR35_RS13390 SM00490 helicase superfamily c-terminal domain SR35_RS13545 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS13545 SM00895 SR35_RS13545 SR35_RS13550 SM00257 Lysin motif SR35_RS13550 SM00749 bacterial OsmY and nodulation domain SR35_RS13560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SR35_RS13565 SM00450 Rhodanese Homology Domain SR35_RS13570 SM00528 Domain in histone-like proteins of HNS family SR35_RS13610 SM00382 ATPases associated with a variety of cellular activities SR35_RS13640 SM00347 helix_turn_helix multiple antibiotic resistance protein SR35_RS13705 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SR35_RS13720 SM00382 ATPases associated with a variety of cellular activities SR35_RS13760 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS13760 SM01134 SR35_RS13760 SR35_RS13770 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SR35_RS13770 SM00382 ATPases associated with a variety of cellular activities SR35_RS13775 SM00849 Metallo-beta-lactamase superfamily SR35_RS13795 SM00354 helix_turn _helix lactose operon repressor SR35_RS13885 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SR35_RS13885 SM00382 ATPases associated with a variety of cellular activities SR35_RS13895 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SR35_RS13895 SM00534 ATPase domain of DNA mismatch repair MUTS family SR35_RS13905 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS13905 SM01134 SR35_RS13905 SR35_RS13920 SM01007 Class II Aldolase and Adducin N-terminal domain SR35_RS13945 SM00257 Lysin motif SR35_RS14015 SM01101 SR35_RS14015 SR35_RS14040 SM00487 DEAD-like helicases superfamily SR35_RS14040 SM00490 helicase superfamily c-terminal domain SR35_RS14085 SM00893 Electron transfer flavoprotein domain SR35_RS14130 SM01192 SR35_RS14130 SR35_RS14130 SM01193 SR35_RS14130 SR35_RS14150 SM00966 SpoVT / AbrB like domain SR35_RS14155 SM00954 Region found in RelA / SpoT proteins SR35_RS14165 SM00073 Histidine Phosphotransfer domain SR35_RS14165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS14165 SM00387 Histidine kinase-like ATPases SR35_RS14165 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS14165 SM00448 cheY-homologous receiver domain SR35_RS14170 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SR35_RS14175 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SR35_RS14230 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SR35_RS14230 SM00475 5'-3' exonuclease SR35_RS14240 SM01007 Class II Aldolase and Adducin N-terminal domain SR35_RS14265 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS14265 SM01134 SR35_RS14265 SR35_RS14305 SM00925 MltA specific insert domain SR35_RS14325 SM00646 SR35_RS14325 SR35_RS14335 SM00382 ATPases associated with a variety of cellular activities SR35_RS14385 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SR35_RS14405 SM00927 DNA mismatch repair enzyme MutH SR35_RS14430 SM00563 Phosphate acyltransferases SR35_RS14435 SM00354 helix_turn _helix lactose operon repressor SR35_RS14485 SM00862 Transcriptional regulatory protein, C terminal SR35_RS14510 SM00028 Tetratricopeptide repeats SR35_RS14510 SM00862 Transcriptional regulatory protein, C terminal SR35_RS14525 SM00421 helix_turn_helix, Lux Regulon SR35_RS14575 SM00257 Lysin motif SR35_RS14580 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SR35_RS14585 SM01092 CO dehydrogenase flavoprotein C-terminal domain SR35_RS14595 SM00091 PAS domain SR35_RS14595 SM00382 ATPases associated with a variety of cellular activities SR35_RS14650 SM01092 CO dehydrogenase flavoprotein C-terminal domain SR35_RS14655 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SR35_RS14710 SM00937 SR35_RS14710 SR35_RS14755 SM01022 SR35_RS14755 SR35_RS14795 SM01011 Aminopeptidase P, N-terminal domain SR35_RS14885 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SR35_RS14920 SM00861 Transketolase, pyrimidine binding domain SR35_RS14965 SM00731 SprT homologues. SR35_RS14990 SM00732 Likely ribonuclease with RNase H fold. SR35_RS14995 SM00382 ATPases associated with a variety of cellular activities SR35_RS15010 SM01152 SR35_RS15010 SR35_RS15020 SM00729 Elongator protein 3, MiaB family, Radical SAM SR35_RS15030 SM00870 SR35_RS15030 SR35_RS15055 SM00478 endonuclease III SR35_RS15055 SM00525 SR35_RS15055 SR35_RS15115 SM01276 SR35_RS15115 SR35_RS15155 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS15155 SM00895 SR35_RS15155 SR35_RS15300 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS15330 SM00729 Elongator protein 3, MiaB family, Radical SAM SR35_RS15340 SM00563 Phosphate acyltransferases SR35_RS15345 SM00434 DNA Topoisomerase IV SR35_RS15355 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS15365 SM00871 Bacterial transcription activator, effector binding domain SR35_RS15375 SM00448 cheY-homologous receiver domain SR35_RS15375 SM00862 Transcriptional regulatory protein, C terminal SR35_RS15380 SM00387 Histidine kinase-like ATPases SR35_RS15380 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS15400 SM00387 Histidine kinase-like ATPases SR35_RS15400 SM00433 TopoisomeraseII SR35_RS15510 SM00244 prohibitin homologues SR35_RS15535 SM01118 SR35_RS15535 SR35_RS15545 SM00287 Bacterial SH3 domain homologues SR35_RS15560 SM00905 Dihydroneopterin aldolase SR35_RS15565 SM01207 SR35_RS15565 SR35_RS15600 SM00400 zinc finger SR35_RS15600 SM00493 SR35_RS15600 SR35_RS15600 SM00766 DNA primase DnaG DnaB-binding SR35_RS15630 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SR35_RS15630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SR35_RS15645 SM00354 helix_turn _helix lactose operon repressor SR35_RS15650 SM01038 Beta galactosidase small chain SR35_RS15680 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS15730 SM00858 SR35_RS15730 SR35_RS15745 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS15745 SM00895 SR35_RS15745 SR35_RS15895 SM00858 SR35_RS15895 SR35_RS15910 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS15910 SM01134 SR35_RS15910 SR35_RS16005 SM00749 bacterial OsmY and nodulation domain SR35_RS16015 SM00859 Semialdehyde dehydrogenase, NAD binding domain SR35_RS16030 SM00465 GIY-YIG type nucleases (URI domain) SR35_RS16070 SM00487 DEAD-like helicases superfamily SR35_RS16070 SM00490 helicase superfamily c-terminal domain SR35_RS16075 SM00028 Tetratricopeptide repeats SR35_RS16080 SM00316 Ribosomal protein S1-like RNA-binding domain SR35_RS16080 SM00322 K homology RNA-binding domain SR35_RS16085 SM01387 SR35_RS16085 SR35_RS16105 SM00316 Ribosomal protein S1-like RNA-binding domain SR35_RS16150 SM00382 ATPases associated with a variety of cellular activities SR35_RS16160 SM01103 SR35_RS16160 SR35_RS16235 SM00382 ATPases associated with a variety of cellular activities SR35_RS16265 SM00382 ATPases associated with a variety of cellular activities SR35_RS16310 SM00073 Histidine Phosphotransfer domain SR35_RS16310 SM00091 PAS domain SR35_RS16310 SM00387 Histidine kinase-like ATPases SR35_RS16310 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS16310 SM00448 cheY-homologous receiver domain SR35_RS16315 SM00729 Elongator protein 3, MiaB family, Radical SAM SR35_RS16390 SM01130 SR35_RS16390 SR35_RS16395 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS16395 SM00895 SR35_RS16395 SR35_RS16435 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SR35_RS16440 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SR35_RS16495 SM00316 Ribosomal protein S1-like RNA-binding domain SR35_RS16525 SM00052 Putative diguanylate phosphodiesterase SR35_RS16525 SM00267 diguanylate cyclase SR35_RS16530 SM00829 Enoylreductase SR35_RS16555 SM00878 Biotin carboxylase C-terminal domain SR35_RS16620 SM00062 Bacterial periplasmic substrate-binding proteins SR35_RS16635 SM00382 ATPases associated with a variety of cellular activities SR35_RS16740 SM00422 helix_turn_helix, mercury resistance SR35_RS16755 SM00662 RNA polymerases D SR35_RS16760 SM00363 S4 RNA-binding domain SR35_RS16760 SM01390 SR35_RS16760 SR35_RS16825 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SR35_RS16830 SM01374 SR35_RS16830 SR35_RS16850 SM00322 K homology RNA-binding domain SR35_RS16865 SM01382 SR35_RS16865 SR35_RS16865 SM01383 SR35_RS16865 SR35_RS16885 SM01403 SR35_RS16885 SR35_RS16910 SM00382 ATPases associated with a variety of cellular activities SR35_RS16970 SM00495 Chitin-binding domain type 3 SR35_RS16980 SM00838 Elongation factor G C-terminus SR35_RS16980 SM00889 Elongation factor G, domain IV SR35_RS17045 SM00382 ATPases associated with a variety of cellular activities SR35_RS17075 SM00100 Cyclic nucleotide-monophosphate binding domain SR35_RS17075 SM00419 helix_turn_helix, cAMP Regulatory protein SR35_RS17160 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS17160 SM00866 SR35_RS17160 SR35_RS17240 SM00965 Secretin and TonB N terminus short domain SR35_RS17285 SM00363 S4 RNA-binding domain SR35_RS17310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS17310 SM00387 Histidine kinase-like ATPases SR35_RS17310 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS17315 SM00448 cheY-homologous receiver domain SR35_RS17315 SM00862 Transcriptional regulatory protein, C terminal SR35_RS17325 SM00316 Ribosomal protein S1-like RNA-binding domain SR35_RS17325 SM00732 Likely ribonuclease with RNase H fold. SR35_RS17330 SM00899 SR35_RS17330 SR35_RS17380 SM00421 helix_turn_helix, Lux Regulon SR35_RS17395 SM00382 ATPases associated with a variety of cellular activities SR35_RS17400 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS17400 SM01134 SR35_RS17400 SR35_RS17410 SM00450 Rhodanese Homology Domain SR35_RS17440 SM00642 Alpha-amylase domain SR35_RS17445 SM00642 Alpha-amylase domain SR35_RS17450 SM00859 Semialdehyde dehydrogenase, NAD binding domain SR35_RS17470 SM00354 helix_turn _helix lactose operon repressor SR35_RS17525 SM00382 ATPases associated with a variety of cellular activities SR35_RS17550 SM00382 ATPases associated with a variety of cellular activities SR35_RS17555 SM00382 ATPases associated with a variety of cellular activities SR35_RS17600 SM00382 ATPases associated with a variety of cellular activities SR35_RS17605 SM00382 ATPases associated with a variety of cellular activities SR35_RS17605 SM00962 SRP54-type protein, GTPase domain SR35_RS17605 SM00963 SRP54-type protein, helical bundle domain SR35_RS17680 SM00382 ATPases associated with a variety of cellular activities SR35_RS17685 SM00382 ATPases associated with a variety of cellular activities SR35_RS17720 SM00382 ATPases associated with a variety of cellular activities SR35_RS17810 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SR35_RS17845 SM00421 helix_turn_helix, Lux Regulon SR35_RS17890 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS17895 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS17905 SM01235 SR35_RS17905 SR35_RS17915 SM00421 helix_turn_helix, Lux Regulon SR35_RS17940 SM00052 Putative diguanylate phosphodiesterase SR35_RS17965 SM00052 Putative diguanylate phosphodiesterase SR35_RS17965 SM00267 diguanylate cyclase SR35_RS17970 SM00028 Tetratricopeptide repeats SR35_RS18030 SM00382 ATPases associated with a variety of cellular activities SR35_RS18035 SM00382 ATPases associated with a variety of cellular activities SR35_RS18115 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS18120 SM00357 Cold shock protein domain SR35_RS18185 SM00382 ATPases associated with a variety of cellular activities SR35_RS18195 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS18200 SM00047 Lysozyme subfamily 2 SR35_RS18205 SM00642 Alpha-amylase domain SR35_RS18225 SM00346 helix_turn_helix isocitrate lyase regulation SR35_RS18260 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SR35_RS18270 SM01007 Class II Aldolase and Adducin N-terminal domain SR35_RS18390 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS18390 SM00895 SR35_RS18390 SR35_RS18405 SM00971 Serine acetyltransferase, N-terminal SR35_RS18425 SM00450 Rhodanese Homology Domain SR35_RS18450 SM00829 Enoylreductase SR35_RS18545 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SR35_RS18545 SM01232 SR35_RS18545 SR35_RS18605 SM00532 Ligase N family SR35_RS18610 SM00072 Guanylate kinase homologues. SR35_RS18615 SM01409 SR35_RS18615 SR35_RS18620 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SR35_RS18620 SM00954 Region found in RelA / SpoT proteins SR35_RS18630 SM00487 DEAD-like helicases superfamily SR35_RS18630 SM00490 helicase superfamily c-terminal domain SR35_RS18725 SM00387 Histidine kinase-like ATPases SR35_RS18730 SM00421 helix_turn_helix, Lux Regulon SR35_RS18730 SM00448 cheY-homologous receiver domain SR35_RS18800 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS18820 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS18820 SM00866 SR35_RS18820 SR35_RS18860 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SR35_RS18875 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS18875 SM00895 SR35_RS18875 SR35_RS18900 SM00387 Histidine kinase-like ATPases SR35_RS18900 SM00433 TopoisomeraseII SR35_RS18910 SM00480 DNA polymerase III beta subunit SR35_RS18915 SM00382 ATPases associated with a variety of cellular activities SR35_RS18915 SM00760 Bacterial dnaA protein helix-turn-helix domain SR35_RS18930 SM01234 SR35_RS18930 SR35_RS19025 SM01061 CAT RNA binding domain SR35_RS19035 SM00382 ATPases associated with a variety of cellular activities SR35_RS19070 SM00382 ATPases associated with a variety of cellular activities SR35_RS19115 SM01228 SR35_RS19115 SR35_RS19125 SM00344 helix_turn_helix ASNC type SR35_RS19135 SM00327 von Willebrand factor (vWF) type A domain SR35_RS19140 SM00382 ATPases associated with a variety of cellular activities SR35_RS19155 SM00382 ATPases associated with a variety of cellular activities SR35_RS19175 SM00354 helix_turn _helix lactose operon repressor SR35_RS19185 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS19185 SM00895 SR35_RS19185 SR35_RS19230 SM00382 ATPases associated with a variety of cellular activities SR35_RS19295 SM00487 DEAD-like helicases superfamily SR35_RS19295 SM00490 helicase superfamily c-terminal domain SR35_RS19310 SM00357 Cold shock protein domain SR35_RS19310 SM00382 ATPases associated with a variety of cellular activities SR35_RS19310 SM00959 Rho termination factor, N-terminal domain SR35_RS19335 SM00984 UDP binding domain SR35_RS19440 SM01219 SR35_RS19440 SR35_RS19515 SM00341 Helicase and RNase D C-terminal SR35_RS19515 SM00487 DEAD-like helicases superfamily SR35_RS19515 SM00490 helicase superfamily c-terminal domain SR35_RS19515 SM00956 SR35_RS19515 SR35_RS19605 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SR35_RS19705 SM00563 Phosphate acyltransferases SR35_RS19715 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SR35_RS19715 SM00474 3'-5' exonuclease SR35_RS19715 SM00475 5'-3' exonuclease SR35_RS19715 SM00482 DNA polymerase A domain SR35_RS19730 SM00729 Elongator protein 3, MiaB family, Radical SAM SR35_RS19740 SM00382 ATPases associated with a variety of cellular activities SR35_RS19740 SM00448 cheY-homologous receiver domain SR35_RS19745 SM00091 PAS domain SR35_RS19745 SM00387 Histidine kinase-like ATPases SR35_RS19745 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS19750 SM01230 SR35_RS19750 SR35_RS19765 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS19765 SM00866 SR35_RS19765 SR35_RS19810 SM01133 SR35_RS19810 SR35_RS19825 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS19825 SM01134 SR35_RS19825 SR35_RS19885 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS19925 SM01007 Class II Aldolase and Adducin N-terminal domain SR35_RS19945 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS19950 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS19980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS19980 SM00387 Histidine kinase-like ATPases SR35_RS19980 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS19985 SM00448 cheY-homologous receiver domain SR35_RS19985 SM00862 Transcriptional regulatory protein, C terminal SR35_RS20075 SM00382 ATPases associated with a variety of cellular activities SR35_RS20075 SM01086 C-terminal, D2-small domain, of ClpB protein SR35_RS20090 SM00354 helix_turn _helix lactose operon repressor SR35_RS20105 SM00487 DEAD-like helicases superfamily SR35_RS20105 SM00490 helicase superfamily c-terminal domain SR35_RS20205 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS20230 SM00859 Semialdehyde dehydrogenase, NAD binding domain SR35_RS20350 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SR35_RS20350 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SR35_RS20355 SM00649 Ribosomal protein L11/L12 SR35_RS20380 SM00663 RNA polymerase I subunit A N-terminus SR35_RS20390 SM00876 Biotin and Thiamin Synthesis associated domain SR35_RS20445 SM00411 bacterial (prokaryotic) histone like domain SR35_RS20460 SM00387 Histidine kinase-like ATPases SR35_RS20460 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS20465 SM00382 ATPases associated with a variety of cellular activities SR35_RS20465 SM00448 cheY-homologous receiver domain SR35_RS20470 SM01209 SR35_RS20470 SR35_RS20470 SM01210 SR35_RS20470 SR35_RS20475 SM00798 AICARFT/IMPCHase bienzyme SR35_RS20475 SM00851 MGS-like domain SR35_RS20540 SM00248 ankyrin repeats SR35_RS20545 SM00346 helix_turn_helix isocitrate lyase regulation SR35_RS20550 SM01018 B12 binding domain SR35_RS20565 SM00363 S4 RNA-binding domain SR35_RS20645 SM00382 ATPases associated with a variety of cellular activities SR35_RS20680 SM00563 Phosphate acyltransferases SR35_RS20730 SM00829 Enoylreductase SR35_RS20735 SM00382 ATPases associated with a variety of cellular activities SR35_RS20740 SM01005 Alanine racemase, C-terminal domain SR35_RS20785 SM00052 Putative diguanylate phosphodiesterase SR35_RS20790 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS20795 SM00422 helix_turn_helix, mercury resistance SR35_RS20860 SM00028 Tetratricopeptide repeats SR35_RS20870 SM00671 Sel1-like repeats. SR35_RS20880 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SR35_RS20905 SM00849 Metallo-beta-lactamase superfamily SR35_RS20925 SM00382 ATPases associated with a variety of cellular activities SR35_RS20960 SM00072 Guanylate kinase homologues. SR35_RS20970 SM00382 ATPases associated with a variety of cellular activities SR35_RS20975 SM00382 ATPases associated with a variety of cellular activities SR35_RS21000 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS21000 SM00866 SR35_RS21000 SR35_RS21015 SM00382 ATPases associated with a variety of cellular activities SR35_RS21050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS21050 SM00387 Histidine kinase-like ATPases SR35_RS21050 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS21055 SM00448 cheY-homologous receiver domain SR35_RS21055 SM00862 Transcriptional regulatory protein, C terminal SR35_RS21070 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS21080 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS21120 SM00448 cheY-homologous receiver domain SR35_RS21125 SM00091 PAS domain SR35_RS21125 SM00387 Histidine kinase-like ATPases SR35_RS21175 SM00862 Transcriptional regulatory protein, C terminal SR35_RS21230 SM00883 Chaperonin 10 Kd subunit SR35_RS21255 SM00841 Elongation factor P, C-terminal SR35_RS21255 SM01185 SR35_RS21255 SR35_RS21340 SM00479 SR35_RS21340 SR35_RS21375 SM00646 SR35_RS21375 SR35_RS21380 SM00853 MutL C terminal dimerisation domain SR35_RS21380 SM01340 SR35_RS21380 SR35_RS21400 SM00244 prohibitin homologues SR35_RS21405 SM00244 prohibitin homologues SR35_RS21415 SM00788 Adenylosuccinate synthetase SR35_RS21425 SM00316 Ribosomal protein S1-like RNA-binding domain SR35_RS21425 SM00357 Cold shock protein domain SR35_RS21425 SM00955 SR35_RS21425 SR35_RS21430 SM00967 RNA 2'-O ribose methyltransferase substrate binding SR35_RS21485 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS21485 SM01134 SR35_RS21485 SR35_RS21510 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SR35_RS21520 SM01007 Class II Aldolase and Adducin N-terminal domain SR35_RS21625 SM01091 Transporter associated domain SR35_RS21655 SM00966 SpoVT / AbrB like domain SR35_RS21675 SM00382 ATPases associated with a variety of cellular activities SR35_RS21725 SM00642 Alpha-amylase domain SR35_RS21735 SM00354 helix_turn _helix lactose operon repressor SR35_RS21740 SM00831 Cation transporter/ATPase, N-terminus SR35_RS21775 SM00822 SR35_RS21775 SR35_RS21845 SM00354 helix_turn _helix lactose operon repressor SR35_RS21870 SM00829 Enoylreductase SR35_RS21970 SM00382 ATPases associated with a variety of cellular activities SR35_RS21990 SM00965 Secretin and TonB N terminus short domain SR35_RS22035 SM00420 helix_turn_helix, Deoxyribose operon repressor SR35_RS22035 SM01134 SR35_RS22035 SR35_RS22205 SM00345 helix_turn_helix gluconate operon transcriptional repressor SR35_RS22205 SM00895 SR35_RS22205 SR35_RS22310 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS22350 SM00347 helix_turn_helix multiple antibiotic resistance protein SR35_RS22355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SR35_RS22355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS22355 SM00319 Homologues of the ligand binding domain of Tar SR35_RS22370 SM00829 Enoylreductase SR35_RS22385 SM00382 ATPases associated with a variety of cellular activities SR35_RS22405 SM00421 helix_turn_helix, Lux Regulon SR35_RS22410 SM00421 helix_turn_helix, Lux Regulon SR35_RS22465 SM00749 bacterial OsmY and nodulation domain SR35_RS22500 SM01133 SR35_RS22500 SR35_RS22505 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SR35_RS22520 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS22540 SM00382 ATPases associated with a variety of cellular activities SR35_RS22545 SM00530 Helix-turn-helix XRE-family like proteins SR35_RS22555 SM00382 ATPases associated with a variety of cellular activities SR35_RS22575 SM00855 Phosphoglycerate mutase family SR35_RS22580 SM00342 helix_turn_helix, arabinose operon control protein SR35_RS22580 SM00871 Bacterial transcription activator, effector binding domain SR35_RS22590 SM00448 cheY-homologous receiver domain SR35_RS22590 SM00862 Transcriptional regulatory protein, C terminal SR35_RS22595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SR35_RS22595 SM00387 Histidine kinase-like ATPases SR35_RS22595 SM00388 His Kinase A (phosphoacceptor) domain SR35_RS22605 SM00448 cheY-homologous receiver domain SR35_RS22605 SM00862 Transcriptional regulatory protein, C terminal