locus-tag class description CP48_RS00030 PF03447 Homoserine dehydrogenase, NAD binding domain CP48_RS00030 PF00742 Homoserine dehydrogenase CP48_RS00030 PF13840 ACT domain CP48_RS00030 PF01842 ACT domain CP48_RS00030 PF00696 Amino acid kinase family CP48_RS00090 PF00994 Probable molybdopterin binding domain CP48_RS00120 PF00012 Hsp70 protein CP48_RS00210 PF01113 Dihydrodipicolinate reductase, N-terminus CP48_RS00210 PF05173 Dihydrodipicolinate reductase, C-terminus CP48_RS00235 PF02142 MGS-like domain CP48_RS00235 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CP48_RS00235 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CP48_RS00250 PF02142 MGS-like domain CP48_RS00250 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CP48_RS00250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CP48_RS00270 PF00378 Enoyl-CoA hydratase/isomerase CP48_RS00315 PF02028 BCCT, betaine/carnitine/choline family transporter CP48_RS00320 PF01012 Electron transfer flavoprotein domain CP48_RS00320 PF00766 Electron transfer flavoprotein FAD-binding domain CP48_RS00475 PF07690 Major Facilitator Superfamily CP48_RS00480 PF07690 Major Facilitator Superfamily CP48_RS00515 PF08502 LeuA allosteric (dimerisation) domain CP48_RS00515 PF00682 HMGL-like CP48_RS00530 PF03466 LysR substrate binding domain CP48_RS00530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS00540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP48_RS00540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP48_RS00540 PF00205 Thiamine pyrophosphate enzyme, central domain CP48_RS00570 PF02381 MraZ protein, putative antitoxin-like CP48_RS00750 PF17831 Pyruvate dehydrogenase E1 component middle domain CP48_RS00750 PF00456 Transketolase, thiamine diphosphate binding domain CP48_RS00795 PF11737 Protein of unknown function (DUF3300) CP48_RS00890 PF00577 Outer membrane usher protein CP48_RS00890 PF13953 PapC C-terminal domain CP48_RS00890 PF13954 PapC N-terminal domain CP48_RS00900 PF13953 PapC C-terminal domain CP48_RS00900 PF13954 PapC N-terminal domain CP48_RS00900 PF00577 Outer membrane usher protein CP48_RS00915 PF12627 Probable RNA and SrmB- binding site of polymerase A CP48_RS00915 PF01743 Poly A polymerase head domain CP48_RS00915 PF12626 Polymerase A arginine-rich C-terminus CP48_RS00960 PF00593 TonB dependent receptor CP48_RS00960 PF07715 TonB-dependent Receptor Plug Domain CP48_RS00975 PF01032 FecCD transport family CP48_RS01000 PF03458 UPF0126 domain CP48_RS01110 PF00318 Ribosomal protein S2 CP48_RS01215 PF02684 Lipid-A-disaccharide synthetase CP48_RS01220 PF02684 Lipid-A-disaccharide synthetase CP48_RS01240 PF01336 OB-fold nucleic acid binding domain CP48_RS01240 PF02811 PHP domain CP48_RS01240 PF14579 Helix-hairpin-helix motif CP48_RS01240 PF07733 Bacterial DNA polymerase III alpha NTPase domain CP48_RS01240 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CP48_RS01380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS01380 PF03466 LysR substrate binding domain CP48_RS01395 PF01464 Transglycosylase SLT domain CP48_RS01395 PF01476 LysM domain CP48_RS01430 PF08254 Threonine leader peptide CP48_RS01435 PF00742 Homoserine dehydrogenase CP48_RS01435 PF03447 Homoserine dehydrogenase, NAD binding domain CP48_RS01435 PF13840 ACT domain CP48_RS01435 PF00696 Amino acid kinase family CP48_RS01435 PF01842 ACT domain CP48_RS01440 PF08544 GHMP kinases C terminal CP48_RS01440 PF00288 GHMP kinases N terminal domain CP48_RS01445 PF14821 Threonine synthase N terminus CP48_RS01445 PF00291 Pyridoxal-phosphate dependent enzyme CP48_RS01455 PF10697 Protein of unknown function (DUF2502) CP48_RS01460 PF03883 Peroxide stress protein YaaA CP48_RS01465 PF01235 Sodium:alanine symporter family CP48_RS01470 PF00923 Transaldolase/Fructose-6-phosphate aldolase CP48_RS01475 PF00994 Probable molybdopterin binding domain CP48_RS01480 PF01184 GPR1/FUN34/yaaH family CP48_RS01485 PF03981 Ubiquinol-cytochrome C chaperone CP48_RS01485 PF13099 Domain of unknown function (DUF3944) CP48_RS01490 PF10807 Protein of unknown function (DUF2541) CP48_RS01495 PF00012 Hsp70 protein CP48_RS01500 PF00684 DnaJ central domain CP48_RS01500 PF01556 DnaJ C terminal domain CP48_RS01500 PF00226 DnaJ domain CP48_RS01505 PF01609 Transposase DDE domain CP48_RS01510 PF01609 Transposase DDE domain CP48_RS01515 PF01848 Hok/gef family CP48_RS01520 PF06965 Na+/H+ antiporter 1 CP48_RS01525 PF03466 LysR substrate binding domain CP48_RS01525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS01530 PF03400 IS1 transposase CP48_RS01535 PF12759 InsA C-terminal domain CP48_RS01535 PF03811 InsA N-terminal domain CP48_RS01540 PF01649 Ribosomal protein S20 CP48_RS01545 PF10837 Protein of unknown function (DUF2575) CP48_RS01550 PF01687 Riboflavin kinase CP48_RS01550 PF06574 FAD synthetase CP48_RS01555 PF08264 Anticodon-binding domain of tRNA CP48_RS01555 PF00133 tRNA synthetases class I (I, L, M and V) CP48_RS01555 PF06827 Zinc finger found in FPG and IleRS CP48_RS01560 PF01252 Signal peptidase (SPase) II CP48_RS01565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CP48_RS01570 PF02401 LytB protein CP48_RS01575 PF01156 Inosine-uridine preferring nucleoside hydrolase CP48_RS01580 PF01113 Dihydrodipicolinate reductase, N-terminus CP48_RS01580 PF05173 Dihydrodipicolinate reductase, C-terminus CP48_RS01595 PF00117 Glutamine amidotransferase class-I CP48_RS01595 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CP48_RS01600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CP48_RS01600 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CP48_RS01600 PF02142 MGS-like domain CP48_RS01610 PF07180 CaiF/GrlA transcriptional regulator CP48_RS01615 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS01620 PF00378 Enoyl-CoA hydratase/isomerase CP48_RS01625 PF00501 AMP-binding enzyme CP48_RS01625 PF13193 AMP-binding enzyme C-terminal domain CP48_RS01630 PF02515 CoA-transferase family III CP48_RS01635 PF02770 Acyl-CoA dehydrogenase, middle domain CP48_RS01635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP48_RS01635 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP48_RS01640 PF02028 BCCT, betaine/carnitine/choline family transporter CP48_RS01645 PF01012 Electron transfer flavoprotein domain CP48_RS01650 PF01012 Electron transfer flavoprotein domain CP48_RS01650 PF00766 Electron transfer flavoprotein FAD-binding domain CP48_RS01655 PF01494 FAD binding domain CP48_RS01665 PF00083 Sugar (and other) transporter CP48_RS01670 PF02525 Flavodoxin-like fold CP48_RS01675 PF02254 TrkA-N domain CP48_RS01675 PF00999 Sodium/hydrogen exchanger family CP48_RS01680 PF00186 Dihydrofolate reductase CP48_RS01685 PF00149 Calcineurin-like phosphoesterase CP48_RS01690 PF04379 ApaG domain CP48_RS01695 PF00398 Ribosomal RNA adenine dimethylase CP48_RS01700 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CP48_RS01705 PF00639 PPIC-type PPIASE domain CP48_RS01705 PF09312 SurA N-terminal domain CP48_RS01710 PF03968 OstA-like protein CP48_RS01710 PF04453 LPS transport system D CP48_RS01715 PF00226 DnaJ domain CP48_RS01715 PF05099 Tellurite resistance protein TerB CP48_RS01720 PF00849 RNA pseudouridylate synthase CP48_RS01725 PF18337 RapA N-terminal Tudor like domain CP48_RS01725 PF18339 RapA N-terminal Tudor like domain 1 CP48_RS01725 PF00176 SNF2 family N-terminal domain CP48_RS01725 PF12137 RNA polymerase recycling family C-terminal CP48_RS01725 PF00271 Helicase conserved C-terminal domain CP48_RS01730 PF00136 DNA polymerase family B CP48_RS01730 PF03104 DNA polymerase family B, exonuclease domain CP48_RS01735 PF00596 Class II Aldolase and Adducin N-terminal domain CP48_RS01740 PF02610 L-arabinose isomerase CP48_RS01740 PF11762 L-arabinose isomerase C-terminal domain CP48_RS01745 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CP48_RS01750 PF12833 Helix-turn-helix domain CP48_RS01750 PF02311 AraC-like ligand binding domain CP48_RS01755 PF09335 SNARE associated Golgi protein CP48_RS01760 PF00005 ABC transporter CP48_RS01765 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS01775 PF12793 Sugar transport-related sRNA regulator N-term CP48_RS01775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS01785 PF07690 Major Facilitator Superfamily CP48_RS01790 PF00694 Aconitase C-terminal domain CP48_RS01795 PF00330 Aconitase family (aconitate hydratase) CP48_RS01800 PF00180 Isocitrate/isopropylmalate dehydrogenase CP48_RS01805 PF00682 HMGL-like CP48_RS01805 PF08502 LeuA allosteric (dimerisation) domain CP48_RS01810 PF08054 Leucine operon leader peptide CP48_RS01815 PF03466 LysR substrate binding domain CP48_RS01815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS01820 PF00205 Thiamine pyrophosphate enzyme, central domain CP48_RS01820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP48_RS01820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP48_RS01825 PF10369 Small subunit of acetolactate synthase CP48_RS01835 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CP48_RS01835 PF00356 Bacterial regulatory proteins, lacI family CP48_RS01840 PF02381 MraZ protein, putative antitoxin-like CP48_RS01845 PF01795 MraW methylase family CP48_RS01850 PF04999 Cell division protein FtsL CP48_RS01855 PF03717 Penicillin-binding Protein dimerisation domain CP48_RS01855 PF00905 Penicillin binding protein transpeptidase domain CP48_RS01860 PF08245 Mur ligase middle domain CP48_RS01860 PF02875 Mur ligase family, glutamate ligase domain CP48_RS01860 PF01225 Mur ligase family, catalytic domain CP48_RS01865 PF08245 Mur ligase middle domain CP48_RS01865 PF01225 Mur ligase family, catalytic domain CP48_RS01865 PF02875 Mur ligase family, glutamate ligase domain CP48_RS01870 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CP48_RS01870 PF00953 Glycosyl transferase family 4 CP48_RS01875 PF02875 Mur ligase family, glutamate ligase domain CP48_RS01875 PF08245 Mur ligase middle domain CP48_RS01880 PF01098 Cell cycle protein CP48_RS01885 PF03033 Glycosyltransferase family 28 N-terminal domain CP48_RS01885 PF04101 Glycosyltransferase family 28 C-terminal domain CP48_RS01890 PF08245 Mur ligase middle domain CP48_RS01890 PF01225 Mur ligase family, catalytic domain CP48_RS01890 PF02875 Mur ligase family, glutamate ligase domain CP48_RS01895 PF01820 D-ala D-ala ligase N-terminus CP48_RS01895 PF07478 D-ala D-ala ligase C-terminus CP48_RS01900 PF08478 POTRA domain, FtsQ-type CP48_RS01900 PF03799 Cell division protein FtsQ CP48_RS01905 PF02491 SHS2 domain inserted in FTSA CP48_RS01910 PF00091 Tubulin/FtsZ family, GTPase domain CP48_RS01910 PF12327 FtsZ family, C-terminal domain CP48_RS01915 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CP48_RS01920 PF06558 Secretion monitor precursor protein (SecM) CP48_RS01925 PF07517 SecA DEAD-like domain CP48_RS01925 PF01043 SecA preprotein cross-linking domain CP48_RS01925 PF07516 SecA Wing and Scaffold domain CP48_RS01925 PF02810 SEC-C motif CP48_RS01930 PF00293 NUDIX domain CP48_RS01940 PF03884 DNA gyrase inhibitor YacG CP48_RS01945 PF07072 Cell division protein CP48_RS01950 PF01121 Dephospho-CoA kinase CP48_RS01955 PF00478 IMP dehydrogenase / GMP reductase domain CP48_RS01960 PF00482 Type II secretion system (T2SS), protein F CP48_RS01965 PF00437 Type II/IV secretion system protein CP48_RS01965 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CP48_RS01970 PF07963 Prokaryotic N-terminal methylation motif CP48_RS01980 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CP48_RS01980 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CP48_RS01985 PF01510 N-acetylmuramoyl-L-alanine amidase CP48_RS01990 PF17113 Regulatory signalling modulator protein AmpE CP48_RS01995 PF00324 Amino acid permease CP48_RS02000 PF00392 Bacterial regulatory proteins, gntR family CP48_RS02000 PF07729 FCD domain CP48_RS02005 PF17831 Pyruvate dehydrogenase E1 component middle domain CP48_RS02005 PF00456 Transketolase, thiamine diphosphate binding domain CP48_RS02010 PF00364 Biotin-requiring enzyme CP48_RS02010 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CP48_RS02010 PF02817 e3 binding domain CP48_RS02015 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP48_RS02015 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS02020 PF11737 Protein of unknown function (DUF3300) CP48_RS02025 PF00330 Aconitase family (aconitate hydratase) CP48_RS02025 PF11791 Aconitate B N-terminal domain CP48_RS02025 PF06434 Aconitate hydratase 2 N-terminus CP48_RS02030 PF06062 Uncharacterised protein family (UPF0231) CP48_RS02035 PF02675 S-adenosylmethionine decarboxylase CP48_RS02040 PF17284 Spermidine synthase tetramerisation domain CP48_RS02045 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) CP48_RS02050 PF07732 Multicopper oxidase CP48_RS02050 PF00394 Multicopper oxidase CP48_RS02050 PF07731 Multicopper oxidase CP48_RS02055 PF01011 PQQ enzyme repeat CP48_RS02060 PF00156 Phosphoribosyl transferase domain CP48_RS02065 PF00484 Carbonic anhydrase CP48_RS02070 PF00005 ABC transporter CP48_RS02075 PF01061 ABC-2 type transporter CP48_RS02080 PF03610 PTS system fructose IIA component CP48_RS02085 PF01522 Polysaccharide deacetylase CP48_RS02090 PF02261 Aspartate decarboxylase CP48_RS02095 PF04754 Putative transposase, YhgA-like CP48_RS02100 PF02569 Pantoate-beta-alanine ligase CP48_RS02105 PF02548 Ketopantoate hydroxymethyltransferase CP48_RS02110 PF00419 Fimbrial protein CP48_RS02115 PF00419 Fimbrial protein CP48_RS02120 PF00419 Fimbrial protein CP48_RS02125 PF00419 Fimbrial protein CP48_RS02130 PF13953 PapC C-terminal domain CP48_RS02130 PF13954 PapC N-terminal domain CP48_RS02130 PF00577 Outer membrane usher protein CP48_RS02135 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS02135 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS02140 PF00419 Fimbrial protein CP48_RS02145 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CP48_RS02150 PF01743 Poly A polymerase head domain CP48_RS02150 PF12626 Polymerase A arginine-rich C-terminus CP48_RS02150 PF12627 Probable RNA and SrmB- binding site of polymerase A CP48_RS02155 PF00749 tRNA synthetases class I (E and Q), catalytic domain CP48_RS02160 PF01258 Prokaryotic dksA/traR C4-type zinc finger CP48_RS02165 PF17746 SfsA N-terminal OB domain CP48_RS02165 PF03749 Sugar fermentation stimulation protein RE domain CP48_RS02170 PF02834 LigT like Phosphoesterase CP48_RS02175 PF00270 DEAD/DEAH box helicase CP48_RS02175 PF04408 Helicase associated domain (HA2) CP48_RS02175 PF00271 Helicase conserved C-terminal domain CP48_RS02175 PF08482 ATP-dependent helicase C-terminal CP48_RS02185 PF00912 Transglycosylase CP48_RS02185 PF14814 Bifunctional transglycosylase second domain CP48_RS02185 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal CP48_RS02185 PF00905 Penicillin binding protein transpeptidase domain CP48_RS02190 PF00593 TonB dependent receptor CP48_RS02190 PF07715 TonB-dependent Receptor Plug Domain CP48_RS02195 PF00005 ABC transporter CP48_RS02200 PF01497 Periplasmic binding protein CP48_RS02205 PF01032 FecCD transport family CP48_RS02210 PF00202 Aminotransferase class-III CP48_RS02215 PF00654 Voltage gated chloride channel CP48_RS02220 PF01521 Iron-sulphur cluster biosynthesis CP48_RS02225 PF03458 UPF0126 domain CP48_RS02230 PF01497 Periplasmic binding protein CP48_RS02235 PF01048 Phosphorylase superfamily CP48_RS02240 PF13286 Phosphohydrolase-associated domain CP48_RS02240 PF01966 HD domain CP48_RS02245 PF00595 PDZ domain CP48_RS02250 PF05651 Putative sugar diacid recognition CP48_RS02250 PF13556 PucR C-terminal helix-turn-helix domain CP48_RS02250 PF17853 GGDEF-like domain CP48_RS02255 PF11944 Protein of unknown function (DUF3461) CP48_RS02260 PF00149 Calcineurin-like phosphoesterase CP48_RS02265 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CP48_RS02265 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS02265 PF14602 Hexapeptide repeat of succinyl-transferase CP48_RS02270 PF01966 HD domain CP48_RS02270 PF01842 ACT domain CP48_RS02270 PF08335 GlnD PII-uridylyltransferase CP48_RS02270 PF01909 Nucleotidyltransferase domain CP48_RS02275 PF00557 Metallopeptidase family M24 CP48_RS02280 PF00318 Ribosomal protein S2 CP48_RS02285 PF00889 Elongation factor TS CP48_RS02290 PF00696 Amino acid kinase family CP48_RS02295 PF01765 Ribosome recycling factor CP48_RS02300 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CP48_RS02300 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CP48_RS02300 PF13288 DXP reductoisomerase C-terminal domain CP48_RS02305 PF01255 Putative undecaprenyl diphosphate synthase CP48_RS02315 PF02163 Peptidase family M50 CP48_RS02315 PF17820 PDZ domain CP48_RS02320 PF07244 Surface antigen variable number repeat CP48_RS02320 PF01103 Surface antigen CP48_RS02325 PF03938 Outer membrane protein (OmpH-like) CP48_RS02330 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CP48_RS02330 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS02335 PF07977 FabA-like domain CP48_RS02340 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS02340 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CP48_RS02345 PF02684 Lipid-A-disaccharide synthetase CP48_RS02350 PF01351 Ribonuclease HII CP48_RS02355 PF02811 PHP domain CP48_RS02355 PF01336 OB-fold nucleic acid binding domain CP48_RS02355 PF07733 Bacterial DNA polymerase III alpha NTPase domain CP48_RS02355 PF14579 Helix-hairpin-helix motif CP48_RS02355 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CP48_RS02360 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CP48_RS02370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CP48_RS02375 PF11734 TilS substrate C-terminal domain CP48_RS02375 PF09179 TilS substrate binding domain CP48_RS02375 PF01171 PP-loop family CP48_RS02380 PF07073 Modulator of Rho-dependent transcription termination (ROF) CP48_RS02385 PF06786 Uncharacterised protein family (UPF0253) CP48_RS02390 PF07152 YaeQ protein CP48_RS02395 PF00472 RF-1 domain CP48_RS02400 PF17185 NlpE C-terminal OB domain CP48_RS02400 PF04170 NlpE N-terminal domain CP48_RS02405 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CP48_RS02410 PF04073 Aminoacyl-tRNA editing domain CP48_RS02410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CP48_RS02410 PF03129 Anticodon binding domain CP48_RS02415 PF18389 TrmO C-terminal domain CP48_RS02415 PF01980 tRNA-methyltransferase O CP48_RS02420 PF16358 RcsF lipoprotein CP48_RS02425 PF03180 NLPA lipoprotein CP48_RS02430 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS02435 PF09383 NIL domain CP48_RS02435 PF00005 ABC transporter CP48_RS02475 PF00248 Aldo/keto reductase family CP48_RS02480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS02480 PF03466 LysR substrate binding domain CP48_RS02485 PF03372 Endonuclease/Exonuclease/phosphatase family CP48_RS02490 PF08241 Methyltransferase domain CP48_RS02495 PF01476 LysM domain CP48_RS02495 PF01464 Transglycosylase SLT domain CP48_RS02500 PF00753 Metallo-beta-lactamase superfamily CP48_RS02500 PF16123 Hydroxyacylglutathione hydrolase C-terminus CP48_RS02505 PF08241 Methyltransferase domain CP48_RS02510 PF00075 RNase H CP48_RS02515 PF00929 Exonuclease CP48_RS02540 PF03400 IS1 transposase CP48_RS02550 PF01609 Transposase DDE domain CP48_RS02550 PF13808 DDE_Tnp_1-associated CP48_RS02555 PF00795 Carbon-nitrogen hydrolase CP48_RS02565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP48_RS02565 PF02770 Acyl-CoA dehydrogenase, middle domain CP48_RS02565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP48_RS02565 PF09317 Domain of unknown function (DUF1974) CP48_RS02570 PF13580 SIS domain CP48_RS02575 PF13230 Glutamine amidotransferases class-II CP48_RS02580 PF03734 L,D-transpeptidase catalytic domain CP48_RS02585 PF00877 NlpC/P60 family CP48_RS02595 PF00771 FHIPEP family CP48_RS02600 PF00691 OmpA family CP48_RS02600 PF13677 Membrane MotB of proton-channel complex MotA/MotB CP48_RS02605 PF13677 Membrane MotB of proton-channel complex MotA/MotB CP48_RS02605 PF00691 OmpA family CP48_RS02610 PF00817 impB/mucB/samB family CP48_RS02610 PF11798 IMS family HHH motif CP48_RS02610 PF11799 impB/mucB/samB family C-terminal domain CP48_RS02615 PF13673 Acetyltransferase (GNAT) domain CP48_RS02630 PF01546 Peptidase family M20/M25/M40 CP48_RS02630 PF07687 Peptidase dimerisation domain CP48_RS02635 PF00156 Phosphoribosyl transferase domain CP48_RS02640 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CP48_RS02645 PF07417 Sigma factor-binding transcriptional regulator Crl CP48_RS02650 PF00267 Gram-negative porin CP48_RS02655 PF00696 Amino acid kinase family CP48_RS02655 PF01472 PUA domain CP48_RS02660 PF00171 Aldehyde dehydrogenase family CP48_RS02670 PF00589 Phage integrase family CP48_RS02690 PF10065 Uncharacterized conserved protein (DUF2303) CP48_RS02700 PF00717 Peptidase S24-like CP48_RS02700 PF01381 Helix-turn-helix CP48_RS02715 PF09669 Phage regulatory protein Rha (Phage_pRha) CP48_RS02715 PF10549 ORF11CD3 domain CP48_RS02730 PF06069 PerC transcriptional activator CP48_RS02735 PF00717 Peptidase S24-like CP48_RS02735 PF01726 LexA DNA binding domain CP48_RS02740 PF05866 Endodeoxyribonuclease RusA CP48_RS02755 PF06147 Protein of unknown function (DUF968) CP48_RS02760 PF06530 Phage antitermination protein Q CP48_RS02765 PF00161 Ribosome inactivating protein CP48_RS02770 PF02258 Shiga-like toxin beta subunit CP48_RS02775 PF04971 Bacteriophage P21 holin S CP48_RS02790 PF03400 IS1 transposase CP48_RS02795 PF03811 InsA N-terminal domain CP48_RS02795 PF12759 InsA C-terminal domain CP48_RS02800 PF00959 Phage lysozyme CP48_RS02815 PF03245 Bacteriophage Rz lysis protein CP48_RS02830 PF13132 Domain of unknown function (DUF3950) CP48_RS02835 PF07471 Phage DNA packaging protein Nu1 CP48_RS02840 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CP48_RS02845 PF02831 gpW CP48_RS02855 PF01343 Peptidase family S49 CP48_RS02865 PF03864 Phage major capsid protein E CP48_RS02935 PF06316 Enterobacterial Ail/Lom protein CP48_RS02940 PF08400 Prophage tail fibre N-terminal CP48_RS02940 PF03335 Phage tail fibre repeat CP48_RS02940 PF07484 Phage Tail Collar Domain CP48_RS02950 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CP48_RS02955 PF00561 alpha/beta hydrolase fold CP48_RS02960 PF01278 Omptin family CP48_RS02970 PF13673 Acetyltransferase (GNAT) domain CP48_RS02975 PF13817 IS66 C-terminal element CP48_RS02975 PF13007 Transposase C of IS166 homeodomain CP48_RS02975 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS02975 PF03050 Transposase IS66 family CP48_RS02980 PF05717 IS66 Orf2 like protein CP48_RS02985 PF01527 Transposase CP48_RS02985 PF13276 HTH-like domain CP48_RS02985 PF00665 Integrase core domain CP48_RS03000 PF00239 Resolvase, N terminal domain CP48_RS03000 PF02796 Helix-turn-helix domain of resolvase CP48_RS03080 PF03466 LysR substrate binding domain CP48_RS03085 PF02625 XdhC and CoxI family CP48_RS03085 PF13478 XdhC Rossmann domain CP48_RS03090 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CP48_RS03090 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CP48_RS03095 PF03450 CO dehydrogenase flavoprotein C-terminal domain CP48_RS03095 PF00941 FAD binding domain in molybdopterin dehydrogenase CP48_RS03100 PF00111 2Fe-2S iron-sulfur cluster binding domain CP48_RS03100 PF01799 [2Fe-2S] binding domain CP48_RS03105 PF07274 Protein of unknown function (DUF1440) CP48_RS03110 PF03692 Putative zinc- or iron-chelating domain CP48_RS03130 PF18649 EcpB C-terminal domain CP48_RS03135 PF16449 Fimbrillin MatB CP48_RS03140 PF00196 Bacterial regulatory proteins, luxR family CP48_RS03150 PF00444 Ribosomal protein L36 CP48_RS03155 PF01197 Ribosomal protein L31 CP48_RS03165 PF13276 HTH-like domain CP48_RS03165 PF00665 Integrase core domain CP48_RS03175 PF01527 Transposase CP48_RS03180 PF11924 Inverse autotransporter, beta-domain CP48_RS03190 PF04224 Protein of unknown function, DUF417 CP48_RS03195 PF07338 Protein of unknown function (DUF1471) CP48_RS03200 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP48_RS03200 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS03205 PF12833 Helix-turn-helix domain CP48_RS03205 PF12852 Cupin CP48_RS03210 PF02754 Cysteine-rich domain CP48_RS03215 PF11870 Domain of unknown function (DUF3390) CP48_RS03215 PF13183 4Fe-4S dicluster domain CP48_RS03215 PF02589 LUD domain CP48_RS03220 PF02589 LUD domain CP48_RS03230 PF00732 GMC oxidoreductase CP48_RS03230 PF05199 GMC oxidoreductase CP48_RS03235 PF00171 Aldehyde dehydrogenase family CP48_RS03240 PF00440 Bacterial regulatory proteins, tetR family CP48_RS03240 PF13977 BetI-type transcriptional repressor, C-terminal CP48_RS03245 PF02028 BCCT, betaine/carnitine/choline family transporter CP48_RS03255 PF00196 Bacterial regulatory proteins, luxR family CP48_RS03255 PF00563 EAL domain CP48_RS03260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS03260 PF03466 LysR substrate binding domain CP48_RS03265 PF06496 Protein of unknown function (DUF1097) CP48_RS03270 PF12796 Ankyrin repeats (3 copies) CP48_RS03275 PF11392 Protein of unknown function (DUF2877) CP48_RS03280 PF02629 CoA binding domain CP48_RS03280 PF00549 CoA-ligase CP48_RS03285 PF06545 Protein of unknown function (DUF1116) CP48_RS03295 PF00696 Amino acid kinase family CP48_RS03300 PF07969 Amidohydrolase family CP48_RS03305 PF00107 Zinc-binding dehydrogenase CP48_RS03305 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS03320 PF01810 LysE type translocator CP48_RS03325 PF07338 Protein of unknown function (DUF1471) CP48_RS03330 PF06506 Propionate catabolism activator CP48_RS03330 PF00158 Sigma-54 interaction domain CP48_RS03330 PF02954 Bacterial regulatory protein, Fis family CP48_RS03340 PF00285 Citrate synthase, C-terminal domain CP48_RS03345 PF03972 MmgE/PrpD family CP48_RS03350 PF13193 AMP-binding enzyme C-terminal domain CP48_RS03350 PF00501 AMP-binding enzyme CP48_RS03350 PF16177 Acetyl-coenzyme A synthetase N-terminus CP48_RS03355 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CP48_RS03360 PF07969 Amidohydrolase family CP48_RS03365 PF03466 LysR substrate binding domain CP48_RS03365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS03370 PF00484 Carbonic anhydrase CP48_RS03375 PF02560 Cyanate lyase C-terminal domain CP48_RS03380 PF07690 Major Facilitator Superfamily CP48_RS03385 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS03385 PF12464 Maltose acetyltransferase CP48_RS03390 PF01306 LacY proton/sugar symporter CP48_RS03395 PF02837 Glycosyl hydrolases family 2, sugar binding domain CP48_RS03395 PF00703 Glycosyl hydrolases family 2 CP48_RS03395 PF16353 Domain of unknown function(DUF4981) CP48_RS03395 PF02929 Beta galactosidase small chain CP48_RS03395 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CP48_RS03400 PF00356 Bacterial regulatory proteins, lacI family CP48_RS03405 PF09339 IclR helix-turn-helix domain CP48_RS03405 PF01614 Bacterial transcriptional regulator CP48_RS03410 PF01494 FAD binding domain CP48_RS03415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CP48_RS03420 PF12697 Alpha/beta hydrolase family CP48_RS03425 PF01557 Fumarylacetoacetate (FAA) hydrolase family CP48_RS03430 PF01118 Semialdehyde dehydrogenase, NAD binding domain CP48_RS03430 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CP48_RS03435 PF00682 HMGL-like CP48_RS03435 PF07836 DmpG-like communication domain CP48_RS03440 PF07690 Major Facilitator Superfamily CP48_RS03445 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) CP48_RS03450 PF00756 Putative esterase CP48_RS03455 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS03455 PF00107 Zinc-binding dehydrogenase CP48_RS03460 PF02583 Metal-sensitive transcriptional repressor CP48_RS03470 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS03475 PF00535 Glycosyl transferase family 2 CP48_RS03480 PF02585 GlcNAc-PI de-N-acetylase CP48_RS03485 PF01527 Transposase CP48_RS03490 PF13333 Integrase core domain CP48_RS03490 PF00665 Integrase core domain CP48_RS03490 PF13276 HTH-like domain CP48_RS03495 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CP48_RS03500 PF00005 ABC transporter CP48_RS03505 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS03510 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CP48_RS03515 PF00490 Delta-aminolevulinic acid dehydratase CP48_RS03520 PF03212 Pertactin CP48_RS03520 PF03797 Autotransporter beta-domain CP48_RS03525 PF15977 Winged helix-turn-helix DNA binding CP48_RS03530 PF00144 Beta-lactamase CP48_RS03540 PF05992 SbmA/BacA-like family CP48_RS03545 PF07759 Protein of unknown function (DUF1615) CP48_RS03550 PF10954 Protein of unknown function (DUF2755) CP48_RS03555 PF10953 Protein of unknown function (DUF2754) CP48_RS03560 PF01820 D-ala D-ala ligase N-terminus CP48_RS03560 PF07478 D-ala D-ala ligase C-terminus CP48_RS03570 PF10796 Sigma-S stabilisation anti-adaptor protein CP48_RS03575 PF00245 Alkaline phosphatase CP48_RS03580 PF07769 psiF repeat CP48_RS03585 PF05230 MASE2 domain CP48_RS03585 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS03590 PF03807 NADP oxidoreductase coenzyme F420-dependent CP48_RS03590 PF14748 Pyrroline-5-carboxylate reductase dimerisation CP48_RS03595 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CP48_RS03600 PF01202 Shikimate kinase CP48_RS03605 PF16362 YaiA protein CP48_RS03615 PF07302 AroM protein CP48_RS03620 PF06865 Pyrimidine/purine nucleoside phosphorylase CP48_RS03625 PF10971 Protein of unknown function (DUF2773) CP48_RS03630 PF04381 Putative exonuclease, RdgC CP48_RS03635 PF00480 ROK family CP48_RS03640 PF07690 Major Facilitator Superfamily CP48_RS03645 PF13476 AAA domain CP48_RS03650 PF00149 Calcineurin-like phosphoesterase CP48_RS03650 PF12320 Type 5 capsule protein repressor C-terminal domain CP48_RS03655 PF00072 Response regulator receiver domain CP48_RS03655 PF00486 Transcriptional regulatory protein, C terminal CP48_RS03660 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS03660 PF00989 PAS fold CP48_RS03660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS03660 PF11808 Phosphate regulon sensor protein PhoR CP48_RS03665 PF05525 Branched-chain amino acid transport protein CP48_RS03670 PF00324 Amino acid permease CP48_RS03675 PF00128 Alpha amylase, catalytic domain CP48_RS03675 PF02903 Alpha amylase, N-terminal ig-like domain CP48_RS03680 PF04336 Acyl carrier protein phosphodiesterase CP48_RS03685 PF02547 Queuosine biosynthesis protein CP48_RS03690 PF01702 Queuine tRNA-ribosyltransferase CP48_RS03695 PF02699 Preprotein translocase subunit CP48_RS03700 PF07549 SecD/SecF GG Motif CP48_RS03700 PF02355 Protein export membrane protein CP48_RS03700 PF13721 SecD export protein N-terminal TM region CP48_RS03705 PF02355 Protein export membrane protein CP48_RS03705 PF07549 SecD/SecF GG Motif CP48_RS03710 PF01844 HNH endonuclease CP48_RS03720 PF03502 Nucleoside-specific channel-forming protein, Tsx CP48_RS03725 PF11622 Protein of unknown function (DUF3251) CP48_RS03730 PF03477 ATP cone domain CP48_RS03735 PF01872 RibD C-terminal domain CP48_RS03735 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CP48_RS03740 PF00885 6,7-dimethyl-8-ribityllumazine synthase CP48_RS03745 PF01029 NusB family CP48_RS03750 PF02769 AIR synthase related protein, C-terminal domain CP48_RS03750 PF00586 AIR synthase related protein, N-terminal domain CP48_RS03755 PF04608 Phosphatidylglycerophosphatase A CP48_RS03760 PF00248 Aldo/keto reductase family CP48_RS03765 PF02779 Transketolase, pyrimidine binding domain CP48_RS03765 PF02780 Transketolase, C-terminal domain CP48_RS03765 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CP48_RS03770 PF00348 Polyprenyl synthetase CP48_RS03775 PF02609 Exonuclease VII small subunit CP48_RS03780 PF02926 THUMP domain CP48_RS03780 PF02568 Thiamine biosynthesis protein (ThiI) CP48_RS03785 PF01965 DJ-1/PfpI family CP48_RS03790 PF02558 Ketopantoate reductase PanE/ApbA CP48_RS03790 PF08546 Ketopantoate reductase PanE/ApbA C terminal CP48_RS03795 PF04461 Protein of unknown function (DUF520) CP48_RS03800 PF07690 Major Facilitator Superfamily CP48_RS03805 PF01040 UbiA prenyltransferase family CP48_RS03810 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CP48_RS03815 PF00510 Cytochrome c oxidase subunit III CP48_RS03820 PF00115 Cytochrome C and Quinol oxidase polypeptide I CP48_RS03825 PF06481 COX Aromatic Rich Motif CP48_RS03825 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CP48_RS03830 PF07690 Major Facilitator Superfamily CP48_RS03835 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CP48_RS03835 PF03923 Uncharacterized lipoprotein CP48_RS03840 PF01722 BolA-like protein CP48_RS03850 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CP48_RS03850 PF05698 Bacterial trigger factor protein (TF) C-terminus CP48_RS03850 PF05697 Bacterial trigger factor protein (TF) CP48_RS03855 PF00574 Clp protease CP48_RS03860 PF06689 ClpX C4-type zinc finger CP48_RS03860 PF10431 C-terminal, D2-small domain, of ClpB protein CP48_RS03860 PF07724 AAA domain (Cdc48 subfamily) CP48_RS03865 PF02190 ATP-dependent protease La (LON) substrate-binding domain CP48_RS03865 PF05362 Lon protease (S16) C-terminal proteolytic domain CP48_RS03865 PF00004 ATPase family associated with various cellular activities (AAA) CP48_RS03870 PF00216 Bacterial DNA-binding protein CP48_RS03875 PF13145 PPIC-type PPIASE domain CP48_RS03890 PF06508 Queuosine biosynthesis protein QueC CP48_RS03895 PF12793 Sugar transport-related sRNA regulator N-term CP48_RS03895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS03905 PF13404 AsnC-type helix-turn-helix domain CP48_RS03905 PF01037 Lrp/AsnC ligand binding domain CP48_RS03910 PF00664 ABC transporter transmembrane region CP48_RS03910 PF00005 ABC transporter CP48_RS03915 PF00664 ABC transporter transmembrane region CP48_RS03915 PF00005 ABC transporter CP48_RS03920 PF00543 Nitrogen regulatory protein P-II CP48_RS03925 PF00909 Ammonium Transporter Family CP48_RS03935 PF09619 Type III secretion system lipoprotein chaperone (YscW) CP48_RS03940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CP48_RS03950 PF07237 Protein of unknown function (DUF1428) CP48_RS03955 PF12792 CSS motif domain associated with EAL CP48_RS03955 PF00563 EAL domain CP48_RS03960 PF10777 Inner membrane protein YlaC CP48_RS03965 PF14602 Hexapeptide repeat of succinyl-transferase CP48_RS03965 PF12464 Maltose acetyltransferase CP48_RS03970 PF05321 Haemolysin expression modulating protein CP48_RS03975 PF10757 Biofilm formation regulator YbaJ CP48_RS03980 PF00873 AcrB/AcrD/AcrF family CP48_RS03985 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS03985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS03990 PF00440 Bacterial regulatory proteins, tetR family CP48_RS03990 PF08361 MAATS-type transcriptional repressor, C-terminal region CP48_RS03995 PF12795 Mechanosensitive ion channel porin domain CP48_RS03995 PF12794 Mechanosensitive ion channel inner membrane domain 1 CP48_RS03995 PF00924 Mechanosensitive ion channel CP48_RS04005 PF10689 Protein of unknown function (DUF2496) CP48_RS04010 PF07445 Primosomal replication protein priC CP48_RS04015 PF04304 Protein of unknown function (DUF454) CP48_RS04020 PF00156 Phosphoribosyl transferase domain CP48_RS04025 PF12170 DNA polymerase III tau subunit V interacting with alpha CP48_RS04025 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CP48_RS04025 PF12169 DNA polymerase III subunits gamma and tau domain III CP48_RS04030 PF02575 YbaB/EbfC DNA-binding family CP48_RS04035 PF13662 Toprim domain CP48_RS04035 PF02132 RecR protein CP48_RS04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS04040 PF00183 Hsp90 protein CP48_RS04045 PF05191 Adenylate kinase, active site lid CP48_RS04050 PF00762 Ferrochelatase CP48_RS04055 PF07859 alpha/beta hydrolase fold CP48_RS04060 PF00294 pfkB family carbohydrate kinase CP48_RS04065 PF00999 Sodium/hydrogen exchanger family CP48_RS04065 PF02254 TrkA-N domain CP48_RS04070 PF07690 Major Facilitator Superfamily CP48_RS04075 PF00149 Calcineurin-like phosphoesterase CP48_RS04075 PF02872 5'-nucleotidase, C-terminal domain CP48_RS04080 PF04073 Aminoacyl-tRNA editing domain CP48_RS04085 PF01963 TraB family CP48_RS04090 PF01381 Helix-turn-helix CP48_RS04095 PF00403 Heavy-metal-associated domain CP48_RS04100 PF04960 Glutaminase CP48_RS04105 PF13520 Amino acid permease CP48_RS04110 PF13411 MerR HTH family regulatory protein CP48_RS04115 PF01957 NfeD-like C-terminal, partner-binding CP48_RS04120 PF16200 C-terminal region of band_7 CP48_RS04120 PF01145 SPFH domain / Band 7 family CP48_RS04125 PF00005 ABC transporter CP48_RS04130 PF03649 Uncharacterised protein family (UPF0014) CP48_RS04135 PF00085 Thioredoxin CP48_RS04140 PF00106 short chain dehydrogenase CP48_RS04145 PF13472 GDSL-like Lipase/Acylhydrolase family CP48_RS04150 PF00005 ABC transporter CP48_RS04165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS04165 PF03466 LysR substrate binding domain CP48_RS04170 PF04115 Ureidoglycolate lyase CP48_RS04175 PF01614 Bacterial transcriptional regulator CP48_RS04175 PF09339 IclR helix-turn-helix domain CP48_RS04180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP48_RS04180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP48_RS04180 PF00205 Thiamine pyrophosphate enzyme, central domain CP48_RS04185 PF01261 Xylose isomerase-like TIM barrel CP48_RS04190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CP48_RS04190 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CP48_RS04195 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CP48_RS04200 PF01979 Amidohydrolase family CP48_RS04205 PF00860 Permease family CP48_RS04210 PF02595 Glycerate kinase family CP48_RS04215 PF05899 Protein of unknown function (DUF861) CP48_RS04215 PF07883 Cupin domain CP48_RS04220 PF01546 Peptidase family M20/M25/M40 CP48_RS04225 PF02615 Malate/L-lactate dehydrogenase CP48_RS04230 PF00549 CoA-ligase CP48_RS04230 PF02629 CoA binding domain CP48_RS04235 PF06545 Protein of unknown function (DUF1116) CP48_RS04240 PF11392 Protein of unknown function (DUF2877) CP48_RS04245 PF00696 Amino acid kinase family CP48_RS04250 PF02222 ATP-grasp domain CP48_RS04250 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CP48_RS04255 PF00731 AIR carboxylase CP48_RS04260 PF12850 Calcineurin-like phosphoesterase superfamily domain CP48_RS04265 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CP48_RS04270 PF09190 DALR domain CP48_RS04270 PF01406 tRNA synthetases class I (C) catalytic domain CP48_RS04275 PF04307 LexA-binding, inner membrane-associated putative hydrolase CP48_RS04285 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CP48_RS04285 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CP48_RS04290 PF00419 Fimbrial protein CP48_RS04295 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS04295 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS04300 PF00577 Outer membrane usher protein CP48_RS04300 PF13954 PapC N-terminal domain CP48_RS04300 PF13953 PapC C-terminal domain CP48_RS04310 PF00419 Fimbrial protein CP48_RS04315 PF00196 Bacterial regulatory proteins, luxR family CP48_RS04315 PF00072 Response regulator receiver domain CP48_RS04325 PF12833 Helix-turn-helix domain CP48_RS04330 PF14488 Domain of unknown function (DUF4434) CP48_RS04335 PF13283 Bacteriophage N adsorption protein A C-term CP48_RS04340 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CP48_RS04340 PF13632 Glycosyl transferase family group 2 CP48_RS04345 PF01609 Transposase DDE domain CP48_RS04345 PF13808 DDE_Tnp_1-associated CP48_RS04365 PF05488 PAAR motif CP48_RS04365 PF05593 RHS Repeat CP48_RS04380 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS04380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS04380 PF00672 HAMP domain CP48_RS04385 PF00486 Transcriptional regulatory protein, C terminal CP48_RS04385 PF00072 Response regulator receiver domain CP48_RS04390 PF02321 Outer membrane efflux protein CP48_RS04395 PF11604 Copper binding periplasmic protein CusF CP48_RS04400 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS04400 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS04405 PF00873 AcrB/AcrD/AcrF family CP48_RS04410 PF00324 Amino acid permease CP48_RS04415 PF00924 Mechanosensitive ion channel CP48_RS04420 PF00881 Nitroreductase family CP48_RS04425 PF04237 YjbR CP48_RS04430 PF06643 Protein of unknown function (DUF1158) CP48_RS04435 PF04107 Glutamate-cysteine ligase family 2(GCS2) CP48_RS04445 PF01848 Hok/gef family CP48_RS04450 PF01609 Transposase DDE domain CP48_RS04455 PF01648 4'-phosphopantetheinyl transferase superfamily CP48_RS04455 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CP48_RS04460 PF07715 TonB-dependent Receptor Plug Domain CP48_RS04460 PF00593 TonB dependent receptor CP48_RS04465 PF00756 Putative esterase CP48_RS04465 PF11806 Domain of unknown function (DUF3327) CP48_RS04470 PF03621 MbtH-like protein CP48_RS04475 PF00550 Phosphopantetheine attachment site CP48_RS04475 PF00975 Thioesterase domain CP48_RS04475 PF00501 AMP-binding enzyme CP48_RS04475 PF00668 Condensation domain CP48_RS04475 PF13193 AMP-binding enzyme C-terminal domain CP48_RS04480 PF02706 Chain length determinant protein CP48_RS04485 PF00005 ABC transporter CP48_RS04490 PF01032 FecCD transport family CP48_RS04495 PF01032 FecCD transport family CP48_RS04500 PF05977 Transmembrane secretion effector CP48_RS04505 PF01497 Periplasmic binding protein CP48_RS04510 PF00425 chorismate binding enzyme CP48_RS04515 PF00501 AMP-binding enzyme CP48_RS04515 PF13193 AMP-binding enzyme C-terminal domain CP48_RS04520 PF00550 Phosphopantetheine attachment site CP48_RS04520 PF00857 Isochorismatase family CP48_RS04530 PF03061 Thioesterase superfamily CP48_RS04535 PF13722 5TM C-terminal transporter carbon starvation CstA CP48_RS04535 PF02554 Carbon starvation protein CstA CP48_RS04540 PF04328 Selenoprotein, putative CP48_RS04545 PF00465 Iron-containing alcohol dehydrogenase CP48_RS04550 PF00155 Aminotransferase class I and II CP48_RS04555 PF02195 ParB-like nuclease domain CP48_RS04560 PF11922 Domain of unknown function (DUF3440) CP48_RS04560 PF01507 Phosphoadenosine phosphosulfate reductase family CP48_RS04565 PF03466 LysR substrate binding domain CP48_RS04565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS04570 PF13098 Thioredoxin-like domain CP48_RS04575 PF00578 AhpC/TSA family CP48_RS04575 PF10417 C-terminal domain of 1-Cys peroxiredoxin CP48_RS04580 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS04580 PF13192 Thioredoxin domain CP48_RS04585 PF00582 Universal stress protein family CP48_RS04590 PF13823 Alcohol dehydrogenase GroES-associated CP48_RS04590 PF00107 Zinc-binding dehydrogenase CP48_RS04590 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS04600 PF14760 Rnk N-terminus CP48_RS04600 PF01272 Transcription elongation factor, GreA/GreB, C-term CP48_RS04605 PF00445 Ribonuclease T2 family CP48_RS04610 PF00939 Sodium:sulfate symporter transmembrane region CP48_RS04615 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CP48_RS04620 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CP48_RS04625 PF04223 Citrate lyase, alpha subunit (CitF) CP48_RS04630 PF03328 HpcH/HpaI aldolase/citrate lyase family CP48_RS04635 PF06857 Malonate decarboxylase delta subunit (MdcD) CP48_RS04640 PF08218 Citrate lyase ligase C-terminal domain CP48_RS04645 PF00989 PAS fold CP48_RS04645 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CP48_RS04645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS04645 PF17203 Single cache domain 3 CP48_RS04650 PF12431 Transcriptional regulator CP48_RS04650 PF00072 Response regulator receiver domain CP48_RS04655 PF03606 C4-dicarboxylate anaerobic carrier CP48_RS04660 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP CP48_RS04665 PF00313 'Cold-shock' DNA-binding domain CP48_RS04670 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CP48_RS04675 PF00795 Carbon-nitrogen hydrolase CP48_RS04680 PF02416 mttA/Hcf106 family CP48_RS04685 PF04055 Radical SAM superfamily CP48_RS04685 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CP48_RS04690 PF03466 LysR substrate binding domain CP48_RS04690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS04700 PF03099 Biotin/lipoate A/B protein ligase family CP48_RS04705 PF04359 Protein of unknown function (DUF493) CP48_RS04710 PF00768 D-alanyl-D-alanine carboxypeptidase CP48_RS04710 PF07943 Penicillin-binding protein 5, C-terminal domain CP48_RS04715 PF03330 Lytic transglycolase CP48_RS04715 PF05036 Sporulation related domain CP48_RS04720 PF01098 Cell cycle protein CP48_RS04725 PF00905 Penicillin binding protein transpeptidase domain CP48_RS04725 PF03717 Penicillin-binding Protein dimerisation domain CP48_RS04730 PF02590 Predicted SPOUT methyltransferase CP48_RS04740 PF00300 Histidine phosphatase superfamily (branch 1) CP48_RS04745 PF01467 Cytidylyltransferase-like CP48_RS04750 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CP48_RS04750 PF06144 DNA polymerase III, delta subunit CP48_RS04755 PF04390 Lipopolysaccharide-assembly CP48_RS04760 PF00133 tRNA synthetases class I (I, L, M and V) CP48_RS04760 PF08264 Anticodon-binding domain of tRNA CP48_RS04760 PF13603 Leucyl-tRNA synthetase, Domain 2 CP48_RS04765 PF07295 Zinc-ribbon containing domain CP48_RS04770 PF08238 Sel1 repeat CP48_RS04775 PF06889 Protein of unknown function (DUF1266) CP48_RS04785 PF08238 Sel1 repeat CP48_RS04790 PF06889 Protein of unknown function (DUF1266) CP48_RS04800 PF00012 Hsp70 protein CP48_RS04805 PF01156 Inosine-uridine preferring nucleoside hydrolase CP48_RS04810 PF00005 ABC transporter CP48_RS04815 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS04820 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS04825 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS04830 PF01694 Rhomboid family CP48_RS04835 PF00795 Carbon-nitrogen hydrolase CP48_RS04840 PF03471 Transporter associated domain CP48_RS04840 PF00571 CBS domain CP48_RS04845 PF02130 Uncharacterized protein family UPF0054 CP48_RS04850 PF02562 PhoH-like protein CP48_RS04855 PF04055 Radical SAM superfamily CP48_RS04855 PF00919 Uncharacterized protein family UPF0004 CP48_RS04855 PF01938 TRAM domain CP48_RS04860 PF01494 FAD binding domain CP48_RS04900 PF00733 Asparagine synthase CP48_RS04900 PF13537 Glutamine amidotransferase domain CP48_RS04905 PF13344 Haloacid dehalogenase-like hydrolase CP48_RS04910 PF01047 MarR family CP48_RS04910 PF00480 ROK family CP48_RS04915 PF01979 Amidohydrolase family CP48_RS04920 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CP48_RS04925 PF02378 Phosphotransferase system, EIIC CP48_RS04925 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CP48_RS04925 PF00367 phosphotransferase system, EIIB CP48_RS04930 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CP48_RS04930 PF00749 tRNA synthetases class I (E and Q), catalytic domain CP48_RS04935 PF03573 outer membrane porin, OprD family CP48_RS04940 PF13982 YbfN-like lipoprotein CP48_RS04945 PF01475 Ferric uptake regulator family CP48_RS04960 PF00258 Flavodoxin CP48_RS04965 PF01402 Ribbon-helix-helix protein, copG family CP48_RS04970 PF12697 Alpha/beta hydrolase family CP48_RS04975 PF03925 SeqA protein C-terminal domain CP48_RS04975 PF17206 SeqA protein N-terminal domain CP48_RS04980 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CP48_RS04980 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CP48_RS04980 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CP48_RS04980 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CP48_RS04990 PF10946 Protein of unknown function DUF2625 CP48_RS05005 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CP48_RS05005 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CP48_RS05005 PF01276 Orn/Lys/Arg decarboxylase, major domain CP48_RS05015 PF00486 Transcriptional regulatory protein, C terminal CP48_RS05015 PF00072 Response regulator receiver domain CP48_RS05020 PF13492 GAF domain CP48_RS05020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS05020 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS05020 PF02702 Osmosensitive K+ channel His kinase sensor domain CP48_RS05020 PF13493 Domain of unknown function (DUF4118) CP48_RS05025 PF02669 K+-transporting ATPase, c chain CP48_RS05035 PF03814 Potassium-transporting ATPase A subunit CP48_RS05040 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) CP48_RS05045 PF10725 Protein of unknown function (DUF2517) CP48_RS05050 PF05593 RHS Repeat CP48_RS05050 PF03527 RHS protein CP48_RS05060 PF05593 RHS Repeat CP48_RS05060 PF03527 RHS protein CP48_RS05070 PF13808 DDE_Tnp_1-associated CP48_RS05075 PF13808 DDE_Tnp_1-associated CP48_RS05075 PF01609 Transposase DDE domain CP48_RS05080 PF08349 Protein of unknown function (DUF1722) CP48_RS05085 PF03441 FAD binding domain of DNA photolyase CP48_RS05085 PF00875 DNA photolyase CP48_RS05090 PF00854 POT family CP48_RS05095 PF01784 NIF3 (NGG1p interacting factor 3) CP48_RS05100 PF02682 Carboxyltransferase domain, subdomain C and D CP48_RS05105 PF02626 Carboxyltransferase domain, subdomain A and B CP48_RS05110 PF03746 LamB/YcsF family CP48_RS05115 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CP48_RS05115 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CP48_RS05115 PF06827 Zinc finger found in FPG and IleRS CP48_RS05120 PF05145 Transition state regulatory protein AbrB CP48_RS05125 PF00419 Fimbrial protein CP48_RS05130 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS05130 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS05135 PF13954 PapC N-terminal domain CP48_RS05135 PF13953 PapC C-terminal domain CP48_RS05135 PF00577 Outer membrane usher protein CP48_RS05140 PF00419 Fimbrial protein CP48_RS05145 PF00285 Citrate synthase, C-terminal domain CP48_RS05155 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CP48_RS05160 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CP48_RS05165 PF00890 FAD binding domain CP48_RS05165 PF02910 Fumarate reductase flavoprotein C-term CP48_RS05170 PF13085 2Fe-2S iron-sulfur cluster binding domain CP48_RS05180 PF00676 Dehydrogenase E1 component CP48_RS05180 PF16078 2-oxoglutarate dehydrogenase N-terminus CP48_RS05180 PF02779 Transketolase, pyrimidine binding domain CP48_RS05180 PF16870 2-oxoglutarate dehydrogenase C-terminal CP48_RS05185 PF00364 Biotin-requiring enzyme CP48_RS05185 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CP48_RS05185 PF02817 e3 binding domain CP48_RS05190 PF08442 ATP-grasp domain CP48_RS05190 PF00549 CoA-ligase CP48_RS05195 PF02629 CoA binding domain CP48_RS05195 PF00549 CoA-ligase CP48_RS05200 PF00392 Bacterial regulatory proteins, gntR family CP48_RS05200 PF07702 UTRA domain CP48_RS05205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS05205 PF02378 Phosphotransferase system, EIIC CP48_RS05205 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS05210 PF09261 Alpha mannosidase middle domain CP48_RS05210 PF07748 Glycosyl hydrolases family 38 C-terminal domain CP48_RS05210 PF01074 Glycosyl hydrolases family 38 N-terminal domain CP48_RS05220 PF01654 Cytochrome bd terminal oxidase subunit I CP48_RS05225 PF02322 Cytochrome bd terminal oxidase subunit II CP48_RS05230 PF08173 Membrane bound YbgT-like protein CP48_RS05235 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CP48_RS05240 PF03061 Thioesterase superfamily CP48_RS05245 PF01618 MotA/TolQ/ExbB proton channel family CP48_RS05250 PF02472 Biopolymer transport protein ExbD/TolR CP48_RS05255 PF06519 TolA C-terminal CP48_RS05260 PF07676 WD40-like Beta Propeller Repeat CP48_RS05260 PF04052 TolB amino-terminal domain CP48_RS05265 PF00691 OmpA family CP48_RS05270 PF16331 TolA binding protein trimerisation CP48_RS05270 PF13174 Tetratricopeptide repeat CP48_RS05325 PF02445 Quinolinate synthetase A protein CP48_RS05330 PF04973 Nicotinamide mononucleotide transporter CP48_RS05335 PF01545 Cation efflux family CP48_RS05340 PF13985 YbgS-like protein CP48_RS05350 PF00793 DAHP synthetase I family CP48_RS05355 PF00300 Histidine phosphatase superfamily (branch 1) CP48_RS05360 PF01263 Aldose 1-epimerase CP48_RS05365 PF08544 GHMP kinases C terminal CP48_RS05365 PF00288 GHMP kinases N terminal domain CP48_RS05365 PF10509 Galactokinase galactose-binding signature CP48_RS05370 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CP48_RS05370 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CP48_RS05375 PF16363 GDP-mannose 4,6 dehydratase CP48_RS05380 PF00005 ABC transporter CP48_RS05385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS05385 PF03459 TOBE domain CP48_RS05390 PF10766 Multidrug efflux pump-associated protein AcrZ CP48_RS05400 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS05405 PF00005 ABC transporter CP48_RS05405 PF03459 TOBE domain CP48_RS05415 PF10282 Lactonase, 7-bladed beta-propeller CP48_RS05420 PF03466 LysR substrate binding domain CP48_RS05420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS05425 PF04303 PrpF protein CP48_RS05430 PF00939 Sodium:sulfate symporter transmembrane region CP48_RS05435 PF00330 Aconitase family (aconitate hydratase) CP48_RS05435 PF00694 Aconitase C-terminal domain CP48_RS05440 PF01095 Pectinesterase CP48_RS05445 PF01161 Phosphatidylethanolamine-binding protein CP48_RS05450 PF00202 Aminotransferase class-III CP48_RS05455 PF04055 Radical SAM superfamily CP48_RS05455 PF06968 Biotin and Thiamin Synthesis associated domain CP48_RS05460 PF00155 Aminotransferase class I and II CP48_RS05465 PF08241 Methyltransferase domain CP48_RS05475 PF17757 UvrB interaction domain CP48_RS05475 PF12344 Ultra-violet resistance protein B CP48_RS05475 PF02151 UvrB/uvrC motif CP48_RS05475 PF00271 Helicase conserved C-terminal domain CP48_RS05475 PF04851 Type III restriction enzyme, res subunit CP48_RS05480 PF01933 Uncharacterised protein family UPF0052 CP48_RS05485 PF04055 Radical SAM superfamily CP48_RS05485 PF06463 Molybdenum Cofactor Synthesis C CP48_RS05490 PF00994 Probable molybdopterin binding domain CP48_RS05495 PF01967 MoaC family CP48_RS05500 PF02597 ThiS family CP48_RS05505 PF02391 MoaE protein CP48_RS05510 PF01027 Inhibitor of apoptosis-promoting Bax1 CP48_RS05515 PF01027 Inhibitor of apoptosis-promoting Bax1 CP48_RS05520 PF03706 Lysylphosphatidylglycerol synthase TM region CP48_RS05525 PF13091 PLD-like domain CP48_RS05530 PF03372 Endonuclease/Exonuclease/phosphatase family CP48_RS05535 PF11076 Putative inner membrane protein YbhQ CP48_RS05550 PF00005 ABC transporter CP48_RS05555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS05560 PF00440 Bacterial regulatory proteins, tetR family CP48_RS05560 PF09209 Tetracyclin repressor-like, C-terminal domain CP48_RS05565 PF00270 DEAD/DEAH box helicase CP48_RS05565 PF00271 Helicase conserved C-terminal domain CP48_RS05570 PF08719 Domain of unknown function (DUF1768) CP48_RS05575 PF06733 DEAD_2 CP48_RS05575 PF00270 DEAD/DEAH box helicase CP48_RS05575 PF13307 Helicase C-terminal domain CP48_RS05580 PF02885 Glycosyl transferase family, helical bundle domain CP48_RS05590 PF07338 Protein of unknown function (DUF1471) CP48_RS05595 PF01258 Prokaryotic dksA/traR C4-type zinc finger CP48_RS05600 PF18331 PKHD-type hydroxylase C-terminal domain CP48_RS05600 PF13640 2OG-Fe(II) oxygenase superfamily CP48_RS05605 PF01609 Transposase DDE domain CP48_RS05610 PF00593 TonB dependent receptor CP48_RS05610 PF07715 TonB-dependent Receptor Plug Domain CP48_RS05615 PF07338 Protein of unknown function (DUF1471) CP48_RS05620 PF05971 RNA methyltransferase CP48_RS05625 PF00924 Mechanosensitive ion channel CP48_RS05630 PF00005 ABC transporter CP48_RS05635 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS05640 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS05650 PF00210 Ferritin-like domain CP48_RS05655 PF00892 EamA-like transporter family CP48_RS05660 PF13505 Outer membrane protein beta-barrel domain CP48_RS05665 PF00884 Sulfatase CP48_RS05675 PF01325 Iron dependent repressor, N-terminal DNA binding domain CP48_RS05675 PF02742 Iron dependent repressor, metal binding and dimerisation domain CP48_RS05685 PF17969 L,D-transpeptidase C-terminal domain CP48_RS05685 PF03734 L,D-transpeptidase catalytic domain CP48_RS05690 PF12848 ABC transporter CP48_RS05690 PF00005 ABC transporter CP48_RS05695 PF07350 Protein of unknown function (DUF1479) CP48_RS05705 PF02901 Pyruvate formate lyase-like CP48_RS05705 PF01228 Glycine radical CP48_RS05710 PF04055 Radical SAM superfamily CP48_RS05715 PF00923 Transaldolase/Fructose-6-phosphate aldolase CP48_RS05720 PF00899 ThiF family CP48_RS05725 PF03453 MoeA N-terminal region (domain I and II) CP48_RS05725 PF03454 MoeA C-terminal region (domain IV) CP48_RS05725 PF00994 Probable molybdopterin binding domain CP48_RS05730 PF01112 Asparaginase CP48_RS05735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP48_RS05735 PF00005 ABC transporter CP48_RS05740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS05745 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS05750 PF12911 N-terminal TM domain of oligopeptide transport permease C CP48_RS05750 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS05755 PF00563 EAL domain CP48_RS05755 PF17153 Periplasmic sensor domain, extracellular CP48_RS05760 PF17156 Gammaproteobacterial periplasmic sensor domain CP48_RS05760 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS05765 PF04055 Radical SAM superfamily CP48_RS05765 PF18693 TRAM domain CP48_RS05765 PF00919 Uncharacterized protein family UPF0004 CP48_RS05770 PF10799 Biofilm formation protein (YliH/bssR) CP48_RS05775 PF07995 Glucose / Sorbosone dehydrogenase CP48_RS05780 PF13417 Glutathione S-transferase, N-terminal domain CP48_RS05780 PF00043 Glutathione S-transferase, C-terminal domain CP48_RS05785 PF07943 Penicillin-binding protein 5, C-terminal domain CP48_RS05785 PF00768 D-alanyl-D-alanine carboxypeptidase CP48_RS05790 PF08220 DeoR-like helix-turn-helix domain CP48_RS05790 PF00455 DeoR C terminal sensor domain CP48_RS05795 PF01569 PAP2 superfamily CP48_RS05800 PF07690 Major Facilitator Superfamily CP48_RS05815 PF07690 Major Facilitator Superfamily CP48_RS05820 PF00440 Bacterial regulatory proteins, tetR family CP48_RS05825 PF02899 Phage integrase, N-terminal SAM-like domain CP48_RS05825 PF00589 Phage integrase family CP48_RS05835 PF07022 Bacteriophage CI repressor helix-turn-helix domain CP48_RS05835 PF16452 Bacteriophage CI repressor C-terminal domain CP48_RS05845 PF06892 Phage regulatory protein CII (CP76) CP48_RS05850 PF17282 Family of unknown function (DUF5347) CP48_RS05860 PF01258 Prokaryotic dksA/traR C4-type zinc finger CP48_RS05865 PF02086 D12 class N6 adenine-specific DNA methyltransferase CP48_RS05870 PF05840 Bacteriophage replication gene A protein (GPA) CP48_RS05880 PF06183 DinI-like family CP48_RS05990 PF07484 Phage Tail Collar Domain CP48_RS05995 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CP48_RS06000 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CP48_RS06010 PF00239 Resolvase, N terminal domain CP48_RS06010 PF02796 Helix-turn-helix domain of resolvase CP48_RS06015 PF04984 Phage tail sheath protein subtilisin-like domain CP48_RS06015 PF17482 Phage tail sheath C-terminal domain CP48_RS06050 PF02080 TrkA-C domain CP48_RS06050 PF06826 Predicted Permease Membrane Region CP48_RS06055 PF11045 Putative inner membrane protein of Enterobacteriaceae CP48_RS06060 PF00462 Glutaredoxin CP48_RS06065 PF07214 Protein of unknown function (DUF1418) CP48_RS06070 PF00881 Nitroreductase family CP48_RS06075 PF08443 RimK-like ATP-grasp domain CP48_RS06075 PF18030 RimK PreATP-grasp domain CP48_RS06080 PF10722 Putative bacterial sensory transduction regulator CP48_RS06090 PF13416 Bacterial extracellular solute-binding protein CP48_RS06095 PF00005 ABC transporter CP48_RS06095 PF08402 TOBE domain CP48_RS06100 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS06105 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS06110 PF10767 Protein of unknown function (DUF2593) CP48_RS06115 PF05958 tRNA (Uracil-5-)-methyltransferase CP48_RS06120 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS06125 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS06130 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS06135 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS06140 PF00005 ABC transporter CP48_RS06145 PF12883 Protein of unknown function (DUF3828) CP48_RS06150 PF01906 Putative heavy-metal-binding CP48_RS06155 PF01510 N-acetylmuramoyl-L-alanine amidase CP48_RS06160 PF01370 NAD dependent epimerase/dehydratase family CP48_RS06165 PF11066 Protein of unknown function (DUF2867) CP48_RS06165 PF13460 NAD(P)H-binding CP48_RS06170 PF01212 Beta-eliminating lyase CP48_RS06175 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP48_RS06175 PF00205 Thiamine pyrophosphate enzyme, central domain CP48_RS06175 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP48_RS06180 PF00111 2Fe-2S iron-sulfur cluster binding domain CP48_RS06180 PF00970 Oxidoreductase FAD-binding domain CP48_RS06180 PF00175 Oxidoreductase NAD-binding domain CP48_RS06185 PF03063 Prismane/CO dehydrogenase family CP48_RS06190 PF03956 Lysine exporter LysO CP48_RS06195 PF00230 Major intrinsic protein CP48_RS06205 PF11398 Protein of unknown function (DUF2813) CP48_RS06210 PF04393 Protein of unknown function (DUF535) CP48_RS06215 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS06220 PF12704 MacB-like periplasmic core domain CP48_RS06220 PF00005 ABC transporter CP48_RS06220 PF02687 FtsX-like permease family CP48_RS06225 PF00313 'Cold-shock' DNA-binding domain CP48_RS06230 PF02617 ATP-dependent Clp protease adaptor protein ClpS CP48_RS06235 PF00004 ATPase family associated with various cellular activities (AAA) CP48_RS06235 PF10431 C-terminal, D2-small domain, of ClpB protein CP48_RS06235 PF17871 AAA lid domain CP48_RS06235 PF07724 AAA domain (Cdc48 subfamily) CP48_RS06235 PF02861 Clp amino terminal domain, pathogenicity island component CP48_RS06240 PF13356 Arm DNA-binding domain CP48_RS06240 PF00589 Phage integrase family CP48_RS06255 PF03400 IS1 transposase CP48_RS06270 PF13148 Protein of unknown function (DUF3987) CP48_RS06290 PF03050 Transposase IS66 family CP48_RS06290 PF13007 Transposase C of IS166 homeodomain CP48_RS06290 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS06290 PF13817 IS66 C-terminal element CP48_RS06295 PF05717 IS66 Orf2 like protein CP48_RS06305 PF13936 Helix-turn-helix domain CP48_RS06305 PF00665 Integrase core domain CP48_RS06310 PF13333 Integrase core domain CP48_RS06310 PF13276 HTH-like domain CP48_RS06310 PF00665 Integrase core domain CP48_RS06315 PF05818 Enterobacterial TraT complement resistance protein CP48_RS06335 PF01219 Prokaryotic diacylglycerol kinase CP48_RS06340 PF08019 Phosphoethanolamine transferase EptA/EptB CP48_RS06340 PF00884 Sulfatase CP48_RS06355 PF01774 UreD urease accessory protein CP48_RS06360 PF00547 Urease, gamma subunit CP48_RS06365 PF00699 Urease beta subunit CP48_RS06370 PF01979 Amidohydrolase family CP48_RS06370 PF00449 Urease alpha-subunit, N-terminal domain CP48_RS06375 PF05194 UreE urease accessory protein, C-terminal domain CP48_RS06375 PF02814 UreE urease accessory protein, N-terminal domain CP48_RS06380 PF01730 UreF CP48_RS06385 PF02492 CobW/HypB/UreG, nucleotide-binding domain CP48_RS06390 PF13018 Extended Signal Peptide of Type V secretion system CP48_RS06390 PF02395 Immunoglobulin A1 protease CP48_RS06390 PF03797 Autotransporter beta-domain CP48_RS06395 PF01527 Transposase CP48_RS06400 PF05818 Enterobacterial TraT complement resistance protein CP48_RS06405 PF01197 Ribosomal protein L31 CP48_RS06430 PF03050 Transposase IS66 family CP48_RS06430 PF13007 Transposase C of IS166 homeodomain CP48_RS06430 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS06430 PF13817 IS66 C-terminal element CP48_RS06440 PF05717 IS66 Orf2 like protein CP48_RS06445 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS06445 PF13007 Transposase C of IS166 homeodomain CP48_RS06445 PF13817 IS66 C-terminal element CP48_RS06445 PF03050 Transposase IS66 family CP48_RS06450 PF03050 Transposase IS66 family CP48_RS06450 PF13817 IS66 C-terminal element CP48_RS06450 PF13007 Transposase C of IS166 homeodomain CP48_RS06450 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS06480 PF15608 PELOTA RNA binding domain CP48_RS06480 PF11202 Phosphoribosyl transferase (PRTase) CP48_RS06500 PF02342 TerD domain CP48_RS06505 PF02342 TerD domain CP48_RS06510 PF05099 Tellurite resistance protein TerB CP48_RS06515 PF03741 Integral membrane protein TerC family CP48_RS06520 PF02342 TerD domain CP48_RS06525 PF02342 TerD domain CP48_RS06535 PF02342 TerD domain CP48_RS06545 PF00593 TonB dependent receptor CP48_RS06545 PF07715 TonB-dependent Receptor Plug Domain CP48_RS06565 PF00665 Integrase core domain CP48_RS06565 PF13276 HTH-like domain CP48_RS06565 PF13333 Integrase core domain CP48_RS06595 PF06722 Protein of unknown function (DUF1205) CP48_RS06640 PF08479 POTRA domain, ShlB-type CP48_RS06640 PF17287 POTRA domain CP48_RS06640 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CP48_RS06655 PF11922 Domain of unknown function (DUF3440) CP48_RS06655 PF01507 Phosphoadenosine phosphosulfate reductase family CP48_RS06660 PF02195 ParB-like nuclease domain CP48_RS06680 PF00665 Integrase core domain CP48_RS06680 PF13333 Integrase core domain CP48_RS06680 PF13276 HTH-like domain CP48_RS06695 PF06276 Ferric iron reductase FhuF-like transporter CP48_RS06695 PF04183 IucA / IucC family CP48_RS06700 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CP48_RS06705 PF00593 TonB dependent receptor CP48_RS06705 PF07715 TonB-dependent Receptor Plug Domain CP48_RS06715 PF13276 HTH-like domain CP48_RS06715 PF13333 Integrase core domain CP48_RS06715 PF00665 Integrase core domain CP48_RS06725 PF03050 Transposase IS66 family CP48_RS06725 PF13007 Transposase C of IS166 homeodomain CP48_RS06725 PF13817 IS66 C-terminal element CP48_RS06725 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS06730 PF05717 IS66 Orf2 like protein CP48_RS06735 PF01527 Transposase CP48_RS06735 PF00665 Integrase core domain CP48_RS06735 PF13276 HTH-like domain CP48_RS06755 PF13018 Extended Signal Peptide of Type V secretion system CP48_RS06755 PF03797 Autotransporter beta-domain CP48_RS06755 PF16168 Adhesin of bacterial autotransporter system, probable stalk CP48_RS06760 PF00350 Dynamin family CP48_RS06765 PF13990 YjcZ-like protein CP48_RS06780 PF06067 Domain of unknown function (DUF932) CP48_RS06785 PF03230 Antirestriction protein CP48_RS06790 PF04002 RadC-like JAB domain CP48_RS06795 PF06174 Protein of unknown function (DUF987) CP48_RS06805 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CP48_RS06810 PF06755 CbtA_toxin of type IV toxin-antitoxin system CP48_RS06835 PF01176 Translation initiation factor 1A / IF-1 CP48_RS06840 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CP48_RS06845 PF00664 ABC transporter transmembrane region CP48_RS06845 PF00005 ABC transporter CP48_RS06850 PF00664 ABC transporter transmembrane region CP48_RS06850 PF00005 ABC transporter CP48_RS06855 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS06860 PF01037 Lrp/AsnC ligand binding domain CP48_RS06865 PF17854 FtsK alpha domain CP48_RS06865 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CP48_RS06865 PF01580 FtsK/SpoIIIE family CP48_RS06865 PF09397 Ftsk gamma domain CP48_RS06870 PF03548 Outer membrane lipoprotein carrier protein LolA CP48_RS06875 PF00004 ATPase family associated with various cellular activities (AAA) CP48_RS06875 PF16193 AAA C-terminal domain CP48_RS06875 PF12002 MgsA AAA+ ATPase C terminal CP48_RS06880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CP48_RS06880 PF02403 Seryl-tRNA synthetase N-terminal domain CP48_RS06885 PF00384 Molybdopterin oxidoreductase CP48_RS06885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS06885 PF01568 Molydopterin dinucleotide binding domain CP48_RS06890 PF12800 4Fe-4S binding domain CP48_RS06890 PF13247 4Fe-4S dicluster domain CP48_RS06895 PF04976 DMSO reductase anchor subunit (DmsC) CP48_RS06900 PF00857 Isochorismatase family CP48_RS06905 PF07690 Major Facilitator Superfamily CP48_RS06910 PF13520 Amino acid permease CP48_RS06915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS06915 PF03466 LysR substrate binding domain CP48_RS06925 PF04055 Radical SAM superfamily CP48_RS06930 PF02901 Pyruvate formate lyase-like CP48_RS06930 PF01228 Glycine radical CP48_RS06935 PF01226 Formate/nitrite transporter CP48_RS06940 PF18381 YcaO cyclodehydratase C-terminal domain CP48_RS06940 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CP48_RS06945 PF04239 Protein of unknown function (DUF421) CP48_RS06950 PF00266 Aminotransferase class-V CP48_RS06955 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CP48_RS06960 PF01435 Peptidase family M48 CP48_RS06965 PF02224 Cytidylate kinase CP48_RS06970 PF00575 S1 RNA binding domain CP48_RS06975 PF00216 Bacterial DNA-binding protein CP48_RS06980 PF03772 Competence protein CP48_RS06980 PF00753 Metallo-beta-lactamase superfamily CP48_RS06985 PF00005 ABC transporter CP48_RS06985 PF00664 ABC transporter transmembrane region CP48_RS06990 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CP48_RS06995 PF06224 Winged helix DNA-binding domain CP48_RS07000 PF03966 Trm112p-like protein CP48_RS07005 PF02348 Cytidylyltransferase CP48_RS07010 PF01636 Phosphotransferase enzyme family CP48_RS07015 PF02698 DUF218 domain CP48_RS07020 PF13847 Methyltransferase domain CP48_RS07025 PF03882 MukF winged-helix domain CP48_RS07025 PF17192 MukF middle domain CP48_RS07025 PF17193 MukF C-terminal domain CP48_RS07030 PF04288 MukE-like family CP48_RS07035 PF16330 MukB hinge domain CP48_RS07035 PF04310 MukB N-terminal CP48_RS07040 PF01471 Putative peptidoglycan binding domain CP48_RS07040 PF03734 L,D-transpeptidase catalytic domain CP48_RS07045 PF05951 Bacterial protein of unknown function (DUF882) CP48_RS07050 PF00753 Metallo-beta-lactamase superfamily CP48_RS07055 PF00155 Aminotransferase class I and II CP48_RS07065 PF00267 Gram-negative porin CP48_RS07070 PF00152 tRNA synthetases class II (D, K and N) CP48_RS07070 PF01336 OB-fold nucleic acid binding domain CP48_RS07075 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CP48_RS07075 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CP48_RS07080 PF11940 Domain of unknown function (DUF3458) Ig-like fold CP48_RS07080 PF01433 Peptidase family M1 domain CP48_RS07080 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CP48_RS07085 PF00005 ABC transporter CP48_RS07090 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS07095 PF00296 Luciferase-like monooxygenase CP48_RS07100 PF09084 NMT1/THI5 like CP48_RS07105 PF03358 NADPH-dependent FMN reductase CP48_RS07110 PF00419 Fimbrial protein CP48_RS07115 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS07115 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS07125 PF00419 Fimbrial protein CP48_RS07130 PF00419 Fimbrial protein CP48_RS07135 PF00419 Fimbrial protein CP48_RS07140 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS07140 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS07145 PF01180 Dihydroorotate dehydrogenase CP48_RS07150 PF07126 Cell-division protein ZapC CP48_RS07155 PF00111 2Fe-2S iron-sulfur cluster binding domain CP48_RS07155 PF03473 MOSC domain CP48_RS07155 PF03476 MOSC N-terminal beta barrel domain CP48_RS07160 PF02926 THUMP domain CP48_RS07160 PF01170 Putative RNA methylase family UPF0020 CP48_RS07160 PF10672 S-adenosylmethionine-dependent methyltransferase CP48_RS07165 PF12848 ABC transporter CP48_RS07165 PF16326 ABC transporter C-terminal domain CP48_RS07165 PF00005 ABC transporter CP48_RS07170 PF04403 Paraquat-inducible protein A CP48_RS07175 PF02470 MlaD protein CP48_RS07180 PF03886 ABC-type transport auxiliary lipoprotein component CP48_RS07185 PF04957 Ribosome modulation factor CP48_RS07190 PF07977 FabA-like domain CP48_RS07195 PF05362 Lon protease (S16) C-terminal proteolytic domain CP48_RS07195 PF13654 AAA domain CP48_RS07200 PF17414 MatP C-terminal ribbon-helix-helix domain CP48_RS07200 PF06303 MatP N-terminal domain CP48_RS07205 PF00691 OmpA family CP48_RS07205 PF01389 OmpA-like transmembrane domain CP48_RS07215 PF03846 Cell division inhibitor SulA CP48_RS07220 PF04993 TfoX N-terminal domain CP48_RS07220 PF04994 TfoX C-terminal domain CP48_RS07225 PF12805 FUSC-like inner membrane protein yccS CP48_RS07230 PF03733 Inner membrane component domain CP48_RS07235 PF12462 DNA helicase IV / RNA helicase N terminal CP48_RS07235 PF00580 UvrD/REP helicase N-terminal domain CP48_RS07235 PF13361 UvrD-like helicase C-terminal domain CP48_RS07240 PF02142 MGS-like domain CP48_RS07245 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CP48_RS07255 PF13380 CoA binding domain CP48_RS07260 PF08755 Hemimethylated DNA-binding protein YccV like CP48_RS07265 PF17785 PUA-like domain CP48_RS07265 PF10672 S-adenosylmethionine-dependent methyltransferase CP48_RS07270 PF00708 Acylphosphatase CP48_RS07275 PF04358 DsrC like protein CP48_RS07280 PF01027 Inhibitor of apoptosis-promoting Bax1 CP48_RS07290 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CP48_RS07290 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CP48_RS07300 PF01292 Prokaryotic cytochrome b561 CP48_RS07305 PF01750 Hydrogenase maturation protease CP48_RS07310 PF07449 Hydrogenase-1 expression protein HyaE CP48_RS07315 PF04809 HupH hydrogenase expression protein, C-terminal conserved region CP48_RS07320 PF01654 Cytochrome bd terminal oxidase subunit I CP48_RS07325 PF02322 Cytochrome bd terminal oxidase subunit II CP48_RS07330 PF08173 Membrane bound YbgT-like protein CP48_RS07335 PF00328 Histidine phosphatase superfamily (branch 2) CP48_RS07340 PF02706 Chain length determinant protein CP48_RS07340 PF13807 G-rich domain on putative tyrosine kinase CP48_RS07340 PF13614 AAA domain CP48_RS07345 PF01451 Low molecular weight phosphotyrosine protein phosphatase CP48_RS07350 PF10531 SLBB domain CP48_RS07350 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CP48_RS07350 PF02563 Polysaccharide biosynthesis/export protein CP48_RS07355 PF06082 Exopolysaccharide biosynthesis protein YbjH CP48_RS07360 PF06251 Capsule biosynthesis GfcC CP48_RS07365 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CP48_RS07375 PF00313 'Cold-shock' DNA-binding domain CP48_RS07380 PF00313 'Cold-shock' DNA-binding domain CP48_RS07385 PF15939 Putative antitoxin of bacterial toxin-antitoxin system CP48_RS07390 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system CP48_RS07395 PF12801 4Fe-4S binding domain CP48_RS07400 PF01627 Hpt domain CP48_RS07400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS07400 PF00672 HAMP domain CP48_RS07400 PF00072 Response regulator receiver domain CP48_RS07400 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS07405 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CP48_RS07410 PF00486 Transcriptional regulatory protein, C terminal CP48_RS07410 PF00072 Response regulator receiver domain CP48_RS07415 PF03264 NapC/NirT cytochrome c family, N-terminal region CP48_RS07420 PF01568 Molydopterin dinucleotide binding domain CP48_RS07420 PF00384 Molybdopterin oxidoreductase CP48_RS07420 PF18364 Molybdopterin oxidoreductase N-terminal domain CP48_RS07425 PF02613 Nitrate reductase delta subunit CP48_RS07435 PF00226 DnaJ domain CP48_RS07435 PF01556 DnaJ C terminal domain CP48_RS07445 PF00328 Histidine phosphatase superfamily (branch 2) CP48_RS07450 PF13993 YccJ-like protein CP48_RS07455 PF03358 NADPH-dependent FMN reductase CP48_RS07465 PF10685 Stress-induced bacterial acidophilic repeat motif CP48_RS07470 PF00860 Permease family CP48_RS07475 PF01613 Flavin reductase like domain CP48_RS07480 PF00881 Nitroreductase family CP48_RS07485 PF12697 Alpha/beta hydrolase family CP48_RS07490 PF01042 Endoribonuclease L-PSP CP48_RS07495 PF00857 Isochorismatase family CP48_RS07500 PF00296 Luciferase-like monooxygenase CP48_RS07505 PF00440 Bacterial regulatory proteins, tetR family CP48_RS07505 PF08362 YcdC-like protein, C-terminal region CP48_RS07510 PF00171 Aldehyde dehydrogenase family CP48_RS07510 PF14850 DNA-binding domain of Proline dehydrogenase CP48_RS07510 PF01619 Proline dehydrogenase CP48_RS07510 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CP48_RS07520 PF00474 Sodium:solute symporter family CP48_RS07530 PF03239 Iron permease FTR1 family CP48_RS07535 PF13473 Cupredoxin-like domain CP48_RS07535 PF09375 Imelysin CP48_RS07540 PF04261 Dyp-type peroxidase family CP48_RS07550 PF02562 PhoH-like protein CP48_RS07555 PF13994 PgaD-like protein CP48_RS07575 PF03400 IS1 transposase CP48_RS07580 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS07580 PF17158 Membrane-associated sensor, integral membrane domain CP48_RS07585 PF13276 HTH-like domain CP48_RS07585 PF00665 Integrase core domain CP48_RS07585 PF13333 Integrase core domain CP48_RS07590 PF01527 Transposase CP48_RS07615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CP48_RS07620 PF02811 PHP domain CP48_RS07625 PF02613 Nitrate reductase delta subunit CP48_RS07630 PF06496 Protein of unknown function (DUF1097) CP48_RS07635 PF03783 Curli production assembly/transport component CsgG CP48_RS07640 PF10614 Type VIII secretion system (T8SS), CsgF protein CP48_RS07645 PF10627 Curli assembly protein CsgE CP48_RS07650 PF00196 Bacterial regulatory proteins, luxR family CP48_RS07660 PF07012 Curlin associated repeat CP48_RS07665 PF07012 Curlin associated repeat CP48_RS07670 PF10610 Thin aggregative fimbriae synthesis protein CP48_RS07680 PF01661 Macro domain CP48_RS07685 PF13091 PLD-like domain CP48_RS07690 PF01757 Acyltransferase family CP48_RS07705 PF04349 Periplasmic glucan biosynthesis protein, MdoG CP48_RS07710 PF00535 Glycosyl transferase family 2 CP48_RS07715 PF07119 Protein of unknown function (DUF1375) CP48_RS07720 PF13984 MsyB protein CP48_RS07730 PF07690 Major Facilitator Superfamily CP48_RS07735 PF03279 Bacterial lipid A biosynthesis acyltransferase CP48_RS07745 PF04264 YceI-like domain CP48_RS07750 PF01292 Prokaryotic cytochrome b561 CP48_RS07755 PF10968 Protein of unknown function (DUF2770) CP48_RS07760 PF01266 FAD dependent oxidoreductase CP48_RS07765 PF13991 BssS protein family CP48_RS07770 PF06183 DinI-like family CP48_RS07775 PF01979 Amidohydrolase family CP48_RS07780 PF07273 Protein of unknown function (DUF1439) CP48_RS07785 PF13417 Glutathione S-transferase, N-terminal domain CP48_RS07785 PF04399 Glutaredoxin 2, C terminal domain CP48_RS07790 PF07690 Major Facilitator Superfamily CP48_RS07795 PF13302 Acetyltransferase (GNAT) domain CP48_RS07800 PF04337 Protein of unknown function, DUF480 CP48_RS07805 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CP48_RS07810 PF03023 Lipid II flippase MurJ CP48_RS07815 PF05130 FlgN protein CP48_RS07820 PF04316 Anti-sigma-28 factor, FlgM CP48_RS07825 PF13144 Chaperone for flagella basal body P-ring formation CP48_RS07830 PF00460 Flagella basal body rod protein CP48_RS07835 PF00460 Flagella basal body rod protein CP48_RS07835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CP48_RS07840 PF03963 Flagellar hook capping protein - N-terminal region CP48_RS07840 PF13860 FlgD Ig-like domain CP48_RS07840 PF13861 FlgD Tudor-like domain CP48_RS07845 PF07559 Flagellar basal body protein FlaE CP48_RS07845 PF00460 Flagella basal body rod protein CP48_RS07845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CP48_RS07850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CP48_RS07850 PF00460 Flagella basal body rod protein CP48_RS07855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CP48_RS07855 PF00460 Flagella basal body rod protein CP48_RS07860 PF02107 Flagellar L-ring protein CP48_RS07865 PF02119 Flagellar P-ring protein CP48_RS07870 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CP48_RS07870 PF10135 Rod binding protein CP48_RS07875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CP48_RS07875 PF00460 Flagella basal body rod protein CP48_RS07880 PF00669 Bacterial flagellin N-terminal helical region CP48_RS07885 PF10150 Ribonuclease E/G family CP48_RS07885 PF12111 Polyribonucleotide phosphorylase C terminal CP48_RS07885 PF00575 S1 RNA binding domain CP48_RS07895 PF01479 S4 domain CP48_RS07895 PF00849 RNA pseudouridylate synthase CP48_RS07900 PF02545 Maf-like protein CP48_RS07905 PF02620 Large ribosomal RNA subunit accumulation protein YceD CP48_RS07910 PF01783 Ribosomal L32p protein family CP48_RS07915 PF02504 Fatty acid synthesis protein CP48_RS07920 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CP48_RS07920 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CP48_RS07925 PF00698 Acyl transferase domain CP48_RS07935 PF00550 Phosphopantetheine attachment site CP48_RS07940 PF02801 Beta-ketoacyl synthase, C-terminal domain CP48_RS07940 PF00109 Beta-ketoacyl synthase, N-terminal domain CP48_RS07945 PF01063 Amino-transferase class IV CP48_RS07950 PF02618 YceG-like family CP48_RS07955 PF02223 Thymidylate kinase CP48_RS07960 PF09115 DNA polymerase III, delta subunit, C terminal CP48_RS07965 PF01026 TatD related DNase CP48_RS07970 PF00367 phosphotransferase system, EIIB CP48_RS07970 PF02378 Phosphotransferase system, EIIC CP48_RS07975 PF00593 TonB dependent receptor CP48_RS07975 PF07715 TonB-dependent Receptor Plug Domain CP48_RS07980 PF01230 HIT domain CP48_RS07985 PF07233 Protein of unknown function (DUF1425) CP48_RS07990 PF13036 Peptidoglycan-synthase activator LpoB CP48_RS07995 PF01636 Phosphotransferase enzyme family CP48_RS08000 PF00933 Glycosyl hydrolase family 3 N terminal domain CP48_RS08005 PF05728 Uncharacterised protein family (UPF0227) CP48_RS08010 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS08015 PF05433 Glycine zipper 2TM domain CP48_RS08020 PF00440 Bacterial regulatory proteins, tetR family CP48_RS08025 PF07338 Protein of unknown function (DUF1471) CP48_RS08030 PF03734 L,D-transpeptidase catalytic domain CP48_RS08030 PF17969 L,D-transpeptidase C-terminal domain CP48_RS08030 PF01476 LysM domain CP48_RS08035 PF00271 Helicase conserved C-terminal domain CP48_RS08035 PF00270 DEAD/DEAH box helicase CP48_RS08035 PF03461 TRCF domain CP48_RS08035 PF17757 UvrB interaction domain CP48_RS08035 PF02559 CarD-like/TRCF domain CP48_RS08040 PF01757 Acyltransferase family CP48_RS08045 PF12704 MacB-like periplasmic core domain CP48_RS08045 PF02687 FtsX-like permease family CP48_RS08050 PF00005 ABC transporter CP48_RS08055 PF12704 MacB-like periplasmic core domain CP48_RS08055 PF02687 FtsX-like permease family CP48_RS08060 PF00480 ROK family CP48_RS08065 PF02146 Sir2 family CP48_RS08070 PF04536 TPM domain CP48_RS08075 PF12158 Protein of unknown function (DUF3592) CP48_RS08080 PF03400 IS1 transposase CP48_RS08085 PF12158 Protein of unknown function (DUF3592) CP48_RS08090 PF13416 Bacterial extracellular solute-binding protein CP48_RS08095 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS08100 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain CP48_RS08100 PF00589 Phage integrase family CP48_RS08115 PF07358 Protein of unknown function (DUF1482) CP48_RS08120 PF05358 DicB protein CP48_RS08135 PF07151 Protein of unknown function (DUF1391) CP48_RS08145 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT CP48_RS08205 PF01848 Hok/gef family CP48_RS08215 PF06147 Protein of unknown function (DUF968) CP48_RS08220 PF05866 Endodeoxyribonuclease RusA CP48_RS08230 PF12833 Helix-turn-helix domain CP48_RS08250 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase CP48_RS08260 PF04971 Bacteriophage P21 holin S CP48_RS08275 PF00959 Phage lysozyme CP48_RS08280 PF03245 Bacteriophage Rz lysis protein CP48_RS08310 PF00574 Clp protease CP48_RS08390 PF08400 Prophage tail fibre N-terminal CP48_RS08390 PF03335 Phage tail fibre repeat CP48_RS08390 PF07484 Phage Tail Collar Domain CP48_RS08400 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS08405 PF00005 ABC transporter CP48_RS08405 PF08402 TOBE domain CP48_RS08415 PF01546 Peptidase family M20/M25/M40 CP48_RS08415 PF07687 Peptidase dimerisation domain CP48_RS08420 PF08007 Cupin superfamily protein CP48_RS08425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS08425 PF08918 PhoQ Sensor CP48_RS08430 PF00486 Transcriptional regulatory protein, C terminal CP48_RS08430 PF00072 Response regulator receiver domain CP48_RS08435 PF00206 Lyase CP48_RS08435 PF08328 Adenylosuccinate lyase C-terminal CP48_RS08440 PF04356 Protein of unknown function (DUF489) CP48_RS08450 PF00293 NUDIX domain CP48_RS08455 PF00849 RNA pseudouridylate synthase CP48_RS08460 PF00180 Isocitrate/isopropylmalate dehydrogenase CP48_RS08475 PF07166 Protein of unknown function (DUF1398) CP48_RS08480 PF13411 MerR HTH family regulatory protein CP48_RS08485 PF00563 EAL domain CP48_RS08485 PF04940 Sensors of blue-light using FAD CP48_RS08490 PF10798 Biofilm development protein YmgB/AriR CP48_RS08500 PF10798 Biofilm development protein YmgB/AriR CP48_RS08510 PF00563 EAL domain CP48_RS08510 PF12792 CSS motif domain associated with EAL CP48_RS08525 PF03797 Autotransporter beta-domain CP48_RS08530 PF03797 Autotransporter beta-domain CP48_RS08535 PF16456 YmgD protein CP48_RS08540 PF13436 Glycine-zipper domain CP48_RS08550 PF03797 Autotransporter beta-domain CP48_RS08555 PF03776 Septum formation topological specificity factor MinE CP48_RS08560 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CP48_RS08565 PF05209 Septum formation inhibitor MinC, N-terminal domain CP48_RS08565 PF03775 Septum formation inhibitor MinC, C-terminal domain CP48_RS08570 PF05666 Fels-1 Prophage Protein-like CP48_RS08575 PF04151 Bacterial pre-peptidase C-terminal domain CP48_RS08585 PF05166 YcgL domain CP48_RS08590 PF01557 Fumarylacetoacetate (FAA) hydrolase family CP48_RS08595 PF03692 Putative zinc- or iron-chelating domain CP48_RS08600 PF06109 Haemolysin E (HlyE) CP48_RS08605 PF06109 Haemolysin E (HlyE) CP48_RS08610 PF00717 Peptidase S24-like CP48_RS08615 PF11798 IMS family HHH motif CP48_RS08615 PF11799 impB/mucB/samB family C-terminal domain CP48_RS08615 PF00817 impB/mucB/samB family CP48_RS08615 PF13438 Domain of unknown function (DUF4113) CP48_RS08620 PF02600 Disulfide bond formation protein DsbB CP48_RS08625 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CP48_RS08630 PF07840 FadR C-terminal domain CP48_RS08630 PF00392 Bacterial regulatory proteins, gntR family CP48_RS08635 PF04293 SpoVR like protein CP48_RS08640 PF01266 FAD dependent oxidoreductase CP48_RS08645 PF00842 Alanine racemase, C-terminal domain CP48_RS08645 PF01168 Alanine racemase, N-terminal domain CP48_RS08650 PF02080 TrkA-C domain CP48_RS08650 PF00999 Sodium/hydrogen exchanger family CP48_RS08650 PF03471 Transporter associated domain CP48_RS08655 PF17676 LD-carboxypeptidase C-terminal domain CP48_RS08655 PF02016 LD-carboxypeptidase N-terminal domain CP48_RS08660 PF01464 Transglycosylase SLT domain CP48_RS08665 PF07238 PilZ domain CP48_RS08665 PF07317 Flagellar regulator YcgR CP48_RS08670 PF04226 Transglycosylase associated protein CP48_RS08680 PF01204 Trehalase CP48_RS08685 PF00391 PEP-utilising enzyme, mobile domain CP48_RS08685 PF00381 PTS HPr component phosphorylation site CP48_RS08685 PF05524 PEP-utilising enzyme, N-terminal CP48_RS08685 PF03610 PTS system fructose IIA component CP48_RS08690 PF02734 DAK2 domain CP48_RS08695 PF02733 Dak1 domain CP48_RS08700 PF00158 Sigma-54 interaction domain CP48_RS08700 PF02954 Bacterial regulatory protein, Fis family CP48_RS08700 PF00989 PAS fold CP48_RS08705 PF03797 Autotransporter beta-domain CP48_RS08705 PF03212 Pertactin CP48_RS08715 PF06071 Protein of unknown function (DUF933) CP48_RS08715 PF01926 50S ribosome-binding GTPase CP48_RS08720 PF01195 Peptidyl-tRNA hydrolase CP48_RS08725 PF10762 Protein of unknown function (DUF2583) CP48_RS08730 PF00916 Sulfate permease family CP48_RS08730 PF01740 STAS domain CP48_RS08735 PF14572 Phosphoribosyl synthetase-associated domain CP48_RS08735 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CP48_RS08740 PF00288 GHMP kinases N terminal domain CP48_RS08740 PF08544 GHMP kinases C terminal CP48_RS08745 PF03550 Outer membrane lipoprotein LolB CP48_RS08750 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CP48_RS08750 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CP48_RS08750 PF01488 Shikimate / quinate 5-dehydrogenase CP48_RS08755 PF00472 RF-1 domain CP48_RS08755 PF03462 PCRF domain CP48_RS08760 PF13847 Methyltransferase domain CP48_RS08760 PF17827 PrmC N-terminal domain CP48_RS08765 PF04247 Invasion gene expression up-regulator, SirB CP48_RS08770 PF13369 Transglutaminase-like superfamily CP48_RS08775 PF00793 DAHP synthetase I family CP48_RS08780 PF13940 Toxin Ldr, type I toxin-antitoxin system CP48_RS08785 PF13940 Toxin Ldr, type I toxin-antitoxin system CP48_RS08790 PF01699 Sodium/calcium exchanger protein CP48_RS08795 PF06150 ChaB CP48_RS08800 PF04752 ChaC-like protein CP48_RS08805 PF02635 DsrE/DsrF-like family CP48_RS08810 PF11924 Inverse autotransporter, beta-domain CP48_RS08815 PF00196 Bacterial regulatory proteins, luxR family CP48_RS08815 PF00072 Response regulator receiver domain CP48_RS08820 PF07730 Histidine kinase CP48_RS08820 PF00672 HAMP domain CP48_RS08820 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CP48_RS08820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS08830 PF07690 Major Facilitator Superfamily CP48_RS08835 PF01568 Molydopterin dinucleotide binding domain CP48_RS08835 PF00384 Molybdopterin oxidoreductase CP48_RS08835 PF14710 Respiratory nitrate reductase alpha N-terminal CP48_RS08840 PF13247 4Fe-4S dicluster domain CP48_RS08840 PF14711 Respiratory nitrate reductase beta C-terminal CP48_RS08845 PF02613 Nitrate reductase delta subunit CP48_RS08850 PF02665 Nitrate reductase gamma subunit CP48_RS08875 PF00551 Formyl transferase CP48_RS08875 PF01842 ACT domain CP48_RS08880 PF02810 SEC-C motif CP48_RS08885 PF01734 Patatin-like phospholipase CP48_RS08890 PF00072 Response regulator receiver domain CP48_RS08895 PF00483 Nucleotidyl transferase CP48_RS08900 PF00816 H-NS histone family CP48_RS08905 PF00265 Thymidine kinase CP48_RS08910 PF00171 Aldehyde dehydrogenase family CP48_RS08910 PF00465 Iron-containing alcohol dehydrogenase CP48_RS08915 PF01914 MarC family integral membrane protein CP48_RS08920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS08925 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS08930 PF12911 N-terminal TM domain of oligopeptide transport permease C CP48_RS08930 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS08935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP48_RS08935 PF00005 ABC transporter CP48_RS08940 PF00005 ABC transporter CP48_RS08940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP48_RS08945 PF04269 Protein of unknown function, DUF440 CP48_RS08950 PF13091 PLD-like domain CP48_RS08950 PF13396 Phospholipase_D-nuclease N-terminal CP48_RS08960 PF07885 Ion channel CP48_RS08960 PF02254 TrkA-N domain CP48_RS08965 PF03795 YCII-related domain CP48_RS08970 PF03544 Gram-negative bacterial TonB protein C-terminal CP48_RS08975 PF03061 Thioesterase superfamily CP48_RS08980 PF04279 Intracellular septation protein A CP48_RS08990 PF03922 OmpW family CP48_RS08995 PF00589 Phage integrase family CP48_RS08995 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain CP48_RS09010 PF07358 Protein of unknown function (DUF1482) CP48_RS09015 PF05358 DicB protein CP48_RS09035 PF07151 Protein of unknown function (DUF1391) CP48_RS09075 PF07789 Protein of unknown function (DUF1627) CP48_RS09105 PF01848 Hok/gef family CP48_RS09120 PF06147 Protein of unknown function (DUF968) CP48_RS09125 PF05866 Endodeoxyribonuclease RusA CP48_RS09130 PF03589 Antitermination protein CP48_RS09140 PF01555 DNA methylase CP48_RS09170 PF04971 Bacteriophage P21 holin S CP48_RS09175 PF00959 Phage lysozyme CP48_RS09180 PF03245 Bacteriophage Rz lysis protein CP48_RS09185 PF00300 Histidine phosphatase superfamily (branch 1) CP48_RS09200 PF07471 Phage DNA packaging protein Nu1 CP48_RS09210 PF02831 gpW CP48_RS09230 PF03864 Phage major capsid protein E CP48_RS09285 PF17482 Phage tail sheath C-terminal domain CP48_RS09285 PF04984 Phage tail sheath protein subtilisin-like domain CP48_RS09320 PF07484 Phage Tail Collar Domain CP48_RS09320 PF08400 Prophage tail fibre N-terminal CP48_RS09320 PF03335 Phage tail fibre repeat CP48_RS09330 PF03050 Transposase IS66 family CP48_RS09330 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS09330 PF13007 Transposase C of IS166 homeodomain CP48_RS09330 PF13817 IS66 C-terminal element CP48_RS09350 PF05974 Domain of unknown function (DUF892) CP48_RS09355 PF05974 Domain of unknown function (DUF892) CP48_RS09360 PF10685 Stress-induced bacterial acidophilic repeat motif CP48_RS09365 PF00290 Tryptophan synthase alpha chain CP48_RS09370 PF00291 Pyridoxal-phosphate dependent enzyme CP48_RS09375 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CP48_RS09375 PF00218 Indole-3-glycerol phosphate synthase CP48_RS09380 PF00117 Glutamine amidotransferase class-I CP48_RS09380 PF02885 Glycosyl transferase family, helical bundle domain CP48_RS09380 PF00591 Glycosyl transferase family, a/b domain CP48_RS09385 PF00425 chorismate binding enzyme CP48_RS09385 PF04715 Anthranilate synthase component I, N terminal region CP48_RS09390 PF02811 PHP domain CP48_RS09395 PF01300 Telomere recombination CP48_RS09400 PF01479 S4 domain CP48_RS09400 PF00849 RNA pseudouridylate synthase CP48_RS09405 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CP48_RS09405 PF12557 Cob(I)alamin adenosyltransferase N terminal CP48_RS09410 PF00106 short chain dehydrogenase CP48_RS09420 PF08496 Peptidase family S49 N-terminal CP48_RS09420 PF01343 Peptidase family S49 CP48_RS09425 PF10692 Protein of unknown function (DUF2498) CP48_RS09435 PF01751 Toprim domain CP48_RS09435 PF01396 Topoisomerase DNA binding C4 zinc finger CP48_RS09435 PF08272 Topoisomerase I zinc-ribbon-like CP48_RS09435 PF01131 DNA topoisomerase CP48_RS09440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS09440 PF03466 LysR substrate binding domain CP48_RS09460 PF00694 Aconitase C-terminal domain CP48_RS09460 PF00330 Aconitase family (aconitate hydratase) CP48_RS09465 PF00925 GTP cyclohydrolase II CP48_RS09470 PF01569 PAP2 superfamily CP48_RS09475 PF06305 Lipopolysaccharide assembly protein A domain CP48_RS09480 PF18073 Rubredoxin metal binding domain CP48_RS09485 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CP48_RS09490 PF01253 Translation initiation factor SUI1 CP48_RS09495 PF05433 Glycine zipper 2TM domain CP48_RS09500 PF00455 DeoR C terminal sensor domain CP48_RS09500 PF08220 DeoR-like helix-turn-helix domain CP48_RS09510 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS09510 PF00563 EAL domain CP48_RS09510 PF13426 PAS domain CP48_RS09520 PF00773 RNB domain CP48_RS09520 PF00575 S1 RNA binding domain CP48_RS09520 PF08206 Ribonuclease B OB domain CP48_RS09520 PF17876 Cold shock domain CP48_RS09535 PF04480 Protein of unknown function (DUF559) CP48_RS09540 PF00005 ABC transporter CP48_RS09545 PF00005 ABC transporter CP48_RS09545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP48_RS09550 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS09550 PF12911 N-terminal TM domain of oligopeptide transport permease C CP48_RS09555 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS09560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS09570 PF10820 Protein of unknown function (DUF2543) CP48_RS09575 PF00324 Amino acid permease CP48_RS09580 PF00120 Glutamine synthetase, catalytic domain CP48_RS09585 PF07722 Peptidase C26 CP48_RS09590 PF07883 Cupin domain CP48_RS09590 PF01381 Helix-turn-helix CP48_RS09595 PF00171 Aldehyde dehydrogenase family CP48_RS09600 PF01266 FAD dependent oxidoreductase CP48_RS09605 PF00202 Aminotransferase class-III CP48_RS09610 PF00158 Sigma-54 interaction domain CP48_RS09610 PF02954 Bacterial regulatory protein, Fis family CP48_RS09615 PF04012 PspA/IM30 family CP48_RS09620 PF06667 Phage shock protein B CP48_RS09625 PF04024 PspC domain CP48_RS09630 PF09584 Phage shock protein PspD (Phageshock_PspD) CP48_RS09635 PF00581 Rhodanese-like domain CP48_RS09640 PF00128 Alpha amylase, catalytic domain CP48_RS09645 PF01547 Bacterial extracellular solute-binding protein CP48_RS09650 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS09655 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS09660 PF00107 Zinc-binding dehydrogenase CP48_RS09665 PF01261 Xylose isomerase-like TIM barrel CP48_RS09670 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CP48_RS09670 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CP48_RS09675 PF03636 Glycosyl hydrolase family 65, N-terminal domain CP48_RS09675 PF03632 Glycosyl hydrolase family 65 central catalytic domain CP48_RS09675 PF03633 Glycosyl hydrolase family 65, C-terminal domain CP48_RS09680 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS09690 PF09381 Outer membrane protein G (OmpG) CP48_RS09695 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CP48_RS09695 PF00356 Bacterial regulatory proteins, lacI family CP48_RS09700 PF04317 YcjX-like family, DUF463 CP48_RS09705 PF05128 Domain of unknown function (DUF697) CP48_RS09710 PF13188 PAS domain CP48_RS09710 PF00158 Sigma-54 interaction domain CP48_RS09710 PF18024 Helix-turn-helix domain CP48_RS09715 PF08534 Redoxin CP48_RS09720 PF13378 Enolase C-terminal domain-like CP48_RS09720 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CP48_RS09725 PF00246 Zinc carboxypeptidase CP48_RS09735 PF12146 Serine aminopeptidase, S33 CP48_RS09750 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS09755 PF00924 Mechanosensitive ion channel CP48_RS09760 PF10749 Protein of unknown function (DUF2534) CP48_RS09765 PF00582 Universal stress protein family CP48_RS09770 PF00325 Bacterial regulatory proteins, crp family CP48_RS09770 PF00027 Cyclic nucleotide-binding domain CP48_RS09775 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CP48_RS09775 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CP48_RS09780 PF03806 AbgT putative transporter family CP48_RS09790 PF01546 Peptidase family M20/M25/M40 CP48_RS09795 PF07687 Peptidase dimerisation domain CP48_RS09795 PF01546 Peptidase family M20/M25/M40 CP48_RS09800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS09800 PF03466 LysR substrate binding domain CP48_RS09810 PF01713 Smr domain CP48_RS09815 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS09815 PF08448 PAS fold CP48_RS09820 PF01544 CorA-like Mg2+ transporter protein CP48_RS09830 PF03880 DbpA RNA binding domain CP48_RS09830 PF00271 Helicase conserved C-terminal domain CP48_RS09830 PF00270 DEAD/DEAH box helicase CP48_RS09835 PF01171 PP-loop family CP48_RS09840 PF00582 Universal stress protein family CP48_RS09845 PF00267 Gram-negative porin CP48_RS09850 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CP48_RS09850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP48_RS09850 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CP48_RS09850 PF10371 Domain of unknown function CP48_RS09850 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CP48_RS09855 PF03891 Domain of unknown function (DUF333) CP48_RS09860 PF03724 META domain CP48_RS09865 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CP48_RS09865 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CP48_RS09870 PF11739 Dicarboxylate transport CP48_RS09875 PF13617 YnbE-like lipoprotein CP48_RS09880 PF07027 Protein of unknown function (DUF1318) CP48_RS09885 PF12833 Helix-turn-helix domain CP48_RS09885 PF14525 AraC-binding-like domain CP48_RS09890 PF00171 Aldehyde dehydrogenase family CP48_RS09895 PF01179 Copper amine oxidase, enzyme domain CP48_RS09895 PF02728 Copper amine oxidase, N3 domain CP48_RS09895 PF07833 Copper amine oxidase N-terminal domain CP48_RS09895 PF02727 Copper amine oxidase, N2 domain CP48_RS09900 PF01575 MaoC like domain CP48_RS09900 PF00171 Aldehyde dehydrogenase family CP48_RS09905 PF05138 Phenylacetic acid catabolic protein CP48_RS09910 PF06243 Phenylacetic acid degradation B CP48_RS09915 PF05138 Phenylacetic acid catabolic protein CP48_RS09920 PF01883 Iron-sulfur cluster assembly protein CP48_RS09925 PF00175 Oxidoreductase NAD-binding domain CP48_RS09925 PF00970 Oxidoreductase FAD-binding domain CP48_RS09925 PF00111 2Fe-2S iron-sulfur cluster binding domain CP48_RS09930 PF00378 Enoyl-CoA hydratase/isomerase CP48_RS09935 PF00378 Enoyl-CoA hydratase/isomerase CP48_RS09940 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CP48_RS09940 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CP48_RS09940 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CP48_RS09945 PF03061 Thioesterase superfamily CP48_RS09950 PF00108 Thiolase, N-terminal domain CP48_RS09950 PF02803 Thiolase, C-terminal domain CP48_RS09955 PF14535 AMP-binding enzyme C-terminal domain CP48_RS09955 PF00501 AMP-binding enzyme CP48_RS09960 PF08223 PaaX-like protein C-terminal domain CP48_RS09960 PF07848 PaaX-like protein CP48_RS09965 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS09975 PF01527 Transposase CP48_RS09980 PF13333 Integrase core domain CP48_RS09980 PF00665 Integrase core domain CP48_RS09980 PF13276 HTH-like domain CP48_RS09990 PF00248 Aldo/keto reductase family CP48_RS10000 PF12146 Serine aminopeptidase, S33 CP48_RS10000 PF12147 Putative methyltransferase CP48_RS10005 PF00782 Dual specificity phosphatase, catalytic domain CP48_RS10010 PF02525 Flavodoxin-like fold CP48_RS10015 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CP48_RS10015 PF00270 DEAD/DEAH box helicase CP48_RS10015 PF11898 Domain of unknown function (DUF3418) CP48_RS10015 PF00271 Helicase conserved C-terminal domain CP48_RS10015 PF04408 Helicase associated domain (HA2) CP48_RS10020 PF02698 DUF218 domain CP48_RS10025 PF00171 Aldehyde dehydrogenase family CP48_RS10030 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CP48_RS10030 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CP48_RS10035 PF01292 Prokaryotic cytochrome b561 CP48_RS10045 PF01848 Hok/gef family CP48_RS10050 PF02203 Tar ligand binding domain homologue CP48_RS10050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CP48_RS10050 PF00672 HAMP domain CP48_RS10055 PF03466 LysR substrate binding domain CP48_RS10055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS10060 PF07063 Domain of unknown function (DUF1338) CP48_RS10065 PF04349 Periplasmic glucan biosynthesis protein, MdoG CP48_RS10075 PF04325 Protein of unknown function (DUF465) CP48_RS10080 PF13302 Acetyltransferase (GNAT) domain CP48_RS10085 PF18836 Beta solenoid repeat from YDCK CP48_RS10090 PF03595 Voltage-dependent anion channel CP48_RS10095 PF03848 Tellurite resistance protein TehB CP48_RS10100 PF11769 Protein of unknown function (DUF3313) CP48_RS10110 PF01797 Transposase IS200 like CP48_RS10115 PF12323 Helix-turn-helix domain CP48_RS10115 PF01385 Probable transposase CP48_RS10115 PF07282 Putative transposase DNA-binding domain CP48_RS10120 PF03594 Benzoate membrane transport protein CP48_RS10125 PF07883 Cupin domain CP48_RS10125 PF01381 Helix-turn-helix CP48_RS10130 PF01136 Peptidase family U32 CP48_RS10130 PF12392 Collagenase CP48_RS10135 PF10829 Protein of unknown function (DUF2554) CP48_RS10140 PF07927 HicA toxin of bacterial toxin-antitoxin, CP48_RS10145 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system CP48_RS10145 PF01381 Helix-turn-helix CP48_RS10150 PF00392 Bacterial regulatory proteins, gntR family CP48_RS10150 PF00155 Aminotransferase class I and II CP48_RS10155 PF13416 Bacterial extracellular solute-binding protein CP48_RS10160 PF00005 ABC transporter CP48_RS10160 PF08402 TOBE domain CP48_RS10165 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS10170 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS10175 PF00171 Aldehyde dehydrogenase family CP48_RS10185 PF10753 Toxin GhoT_OrtT CP48_RS10190 PF10735 Protein of unknown function (DUF2526) CP48_RS10195 PF04657 Putative inner membrane exporter, YdcZ CP48_RS10200 PF00583 Acetyltransferase (GNAT) family CP48_RS10205 PF16884 N-terminal domain of oxidoreductase CP48_RS10205 PF00107 Zinc-binding dehydrogenase CP48_RS10210 PF00392 Bacterial regulatory proteins, gntR family CP48_RS10210 PF07729 FCD domain CP48_RS10215 PF00593 TonB dependent receptor CP48_RS10215 PF07715 TonB-dependent Receptor Plug Domain CP48_RS10225 PF00324 Amino acid permease CP48_RS10230 PF13417 Glutathione S-transferase, N-terminal domain CP48_RS10235 PF17520 Family of unknown function (DUF5445) CP48_RS10240 PF04717 Type VI secretion system, phage-baseplate injector CP48_RS10245 PF03527 RHS protein CP48_RS10245 PF05593 RHS Repeat CP48_RS10245 PF14220 Domain of unknown function (DUF4329) CP48_RS10260 PF01527 Transposase CP48_RS10265 PF13276 HTH-like domain CP48_RS10265 PF00665 Integrase core domain CP48_RS10275 PF13808 DDE_Tnp_1-associated CP48_RS10275 PF01609 Transposase DDE domain CP48_RS10300 PF01609 Transposase DDE domain CP48_RS10300 PF13808 DDE_Tnp_1-associated CP48_RS10305 PF01361 Tautomerase enzyme CP48_RS10310 PF01613 Flavin reductase like domain CP48_RS10315 PF00797 N-acetyltransferase CP48_RS10320 PF02567 Phenazine biosynthesis-like protein CP48_RS10325 PF02665 Nitrate reductase gamma subunit CP48_RS10330 PF02613 Nitrate reductase delta subunit CP48_RS10335 PF14711 Respiratory nitrate reductase beta C-terminal CP48_RS10335 PF13247 4Fe-4S dicluster domain CP48_RS10340 PF01568 Molydopterin dinucleotide binding domain CP48_RS10340 PF00384 Molybdopterin oxidoreductase CP48_RS10340 PF14710 Respiratory nitrate reductase alpha N-terminal CP48_RS10345 PF07690 Major Facilitator Superfamily CP48_RS10355 PF00267 Gram-negative porin CP48_RS10360 PF00892 EamA-like transporter family CP48_RS10365 PF00384 Molybdopterin oxidoreductase CP48_RS10365 PF01568 Molydopterin dinucleotide binding domain CP48_RS10365 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS10370 PF01568 Molydopterin dinucleotide binding domain CP48_RS10370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS10370 PF00384 Molybdopterin oxidoreductase CP48_RS10375 PF12800 4Fe-4S binding domain CP48_RS10375 PF13247 4Fe-4S dicluster domain CP48_RS10375 PF09163 Formate dehydrogenase N, transmembrane CP48_RS10380 PF01292 Prokaryotic cytochrome b561 CP48_RS10385 PF01381 Helix-turn-helix CP48_RS10390 PF00107 Zinc-binding dehydrogenase CP48_RS10390 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS10395 PF03949 Malic enzyme, NAD binding domain CP48_RS10395 PF00390 Malic enzyme, N-terminal domain CP48_RS10400 PF08136 30S ribosomal protein subunit S22 family CP48_RS10405 PF10684 Putative biofilm-dependent modulation protein CP48_RS10410 PF02566 OsmC-like protein CP48_RS10415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP48_RS10415 PF00005 ABC transporter CP48_RS10420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP48_RS10420 PF00005 ABC transporter CP48_RS10425 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS10425 PF12911 N-terminal TM domain of oligopeptide transport permease C CP48_RS10430 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS10435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS10440 PF01427 D-ala-D-ala dipeptidase CP48_RS10445 PF00563 EAL domain CP48_RS10445 PF13426 PAS domain CP48_RS10445 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS10450 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS10455 PF02638 Glycosyl hydrolase-like 10 CP48_RS10460 PF13520 Amino acid permease CP48_RS10465 PF00282 Pyridoxal-dependent decarboxylase conserved domain CP48_RS10475 PF00675 Insulinase (Peptidase family M16) CP48_RS10475 PF05193 Peptidase M16 inactive domain CP48_RS10480 PF07715 TonB-dependent Receptor Plug Domain CP48_RS10485 PF06472 ABC transporter transmembrane region 2 CP48_RS10485 PF00005 ABC transporter CP48_RS10490 PF04055 Radical SAM superfamily CP48_RS10490 PF13186 Iron-sulfur cluster-binding domain CP48_RS10495 PF00884 Sulfatase CP48_RS10500 PF12833 Helix-turn-helix domain CP48_RS10505 PF17073 Two-component-system connector protein CP48_RS10510 PF00384 Molybdopterin oxidoreductase CP48_RS10515 PF09160 FimH, mannose binding CP48_RS10520 PF00419 Fimbrial protein CP48_RS10525 PF00419 Fimbrial protein CP48_RS10535 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS10535 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS10540 PF00419 Fimbrial protein CP48_RS10550 PF07804 HipA-like C-terminal domain CP48_RS10550 PF13657 HipA N-terminal domain CP48_RS10555 PF01381 Helix-turn-helix CP48_RS10560 PF03797 Autotransporter beta-domain CP48_RS10570 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CP48_RS10570 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CP48_RS10575 PF04198 Putative sugar-binding domain CP48_RS10580 PF00005 ABC transporter CP48_RS10585 PF02653 Branched-chain amino acid transport system / permease component CP48_RS10590 PF02653 Branched-chain amino acid transport system / permease component CP48_RS10595 PF13407 Periplasmic binding protein domain CP48_RS10600 PF01791 DeoC/LacD family aldolase CP48_RS10605 PF03992 Antibiotic biosynthesis monooxygenase CP48_RS10610 PF13649 Methyltransferase domain CP48_RS10615 PF01062 Bestrophin, RFP-TM, chloride channel CP48_RS10620 PF01232 Mannitol dehydrogenase Rossmann domain CP48_RS10620 PF08125 Mannitol dehydrogenase C-terminal domain CP48_RS10625 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS10630 PF13811 Domain of unknown function (DUF4186) CP48_RS10635 PF04960 Glutaminase CP48_RS10640 PF00171 Aldehyde dehydrogenase family CP48_RS10645 PF03466 LysR substrate binding domain CP48_RS10645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS10655 PF07690 Major Facilitator Superfamily CP48_RS10660 PF01914 MarC family integral membrane protein CP48_RS10675 PF01047 MarR family CP48_RS10680 PF12833 Helix-turn-helix domain CP48_RS10685 PF13999 MarB protein CP48_RS10695 PF07690 Major Facilitator Superfamily CP48_RS10705 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS10710 PF04076 Bacterial OB fold (BOF) protein CP48_RS10715 PF02464 Competence-damaged protein CP48_RS10720 PF01432 Peptidase family M3 CP48_RS10725 PF00106 short chain dehydrogenase CP48_RS10730 PF07729 FCD domain CP48_RS10730 PF00392 Bacterial regulatory proteins, gntR family CP48_RS10735 PF14001 YdfZ protein CP48_RS10740 PF08125 Mannitol dehydrogenase C-terminal domain CP48_RS10740 PF01232 Mannitol dehydrogenase Rossmann domain CP48_RS10745 PF07690 Major Facilitator Superfamily CP48_RS10745 PF00083 Sugar (and other) transporter CP48_RS10755 PF00239 Resolvase, N terminal domain CP48_RS10755 PF02796 Helix-turn-helix domain of resolvase CP48_RS10760 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CP48_RS10765 PF07484 Phage Tail Collar Domain CP48_RS10765 PF03335 Phage tail fibre repeat CP48_RS10780 PF06316 Enterobacterial Ail/Lom protein CP48_RS10875 PF13817 IS66 C-terminal element CP48_RS10875 PF13007 Transposase C of IS166 homeodomain CP48_RS10875 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS10875 PF03050 Transposase IS66 family CP48_RS10880 PF05717 IS66 Orf2 like protein CP48_RS10885 PF01527 Transposase CP48_RS10885 PF13276 HTH-like domain CP48_RS10885 PF00665 Integrase core domain CP48_RS10895 PF07166 Protein of unknown function (DUF1398) CP48_RS10900 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system CP48_RS10910 PF00313 'Cold-shock' DNA-binding domain CP48_RS10915 PF10721 Protein of unknown function (DUF2514) CP48_RS10920 PF00959 Phage lysozyme CP48_RS10925 PF07041 Protein of unknown function (DUF1327) CP48_RS10930 PF04971 Bacteriophage P21 holin S CP48_RS10935 PF00313 'Cold-shock' DNA-binding domain CP48_RS10940 PF00313 'Cold-shock' DNA-binding domain CP48_RS10945 PF03589 Antitermination protein CP48_RS10950 PF06147 Protein of unknown function (DUF968) CP48_RS10965 PF01848 Hok/gef family CP48_RS10970 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CP48_RS10975 PF04221 RelB antitoxin CP48_RS10980 PF14282 FlxA-like protein CP48_RS11010 PF01381 Helix-turn-helix CP48_RS11015 PF07151 Protein of unknown function (DUF1391) CP48_RS11025 PF05358 DicB protein CP48_RS11030 PF07358 Protein of unknown function (DUF1482) CP48_RS11045 PF00589 Phage integrase family CP48_RS11045 PF12167 Arm DNA-binding domain CP48_RS11050 PF00107 Zinc-binding dehydrogenase CP48_RS11050 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS11055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CP48_RS11055 PF13378 Enolase C-terminal domain-like CP48_RS11060 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CP48_RS11065 PF06932 Protein of unknown function (DUF1283) CP48_RS11070 PF13302 Acetyltransferase (GNAT) domain CP48_RS11075 PF06788 Uncharacterised protein family (UPF0257) CP48_RS11080 PF06649 Protein of unknown function (DUF1161) CP48_RS11085 PF00384 Molybdopterin oxidoreductase CP48_RS11085 PF01568 Molydopterin dinucleotide binding domain CP48_RS11085 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS11090 PF01568 Molydopterin dinucleotide binding domain CP48_RS11090 PF00384 Molybdopterin oxidoreductase CP48_RS11090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS11095 PF12800 4Fe-4S binding domain CP48_RS11095 PF13247 4Fe-4S dicluster domain CP48_RS11100 PF04976 DMSO reductase anchor subunit (DmsC) CP48_RS11105 PF02613 Nitrate reductase delta subunit CP48_RS11110 PF00654 Voltage gated chloride channel CP48_RS11120 PF00480 ROK family CP48_RS11125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS11125 PF03466 LysR substrate binding domain CP48_RS11130 PF07690 Major Facilitator Superfamily CP48_RS11145 PF00089 Trypsin CP48_RS11150 PF00893 Small Multidrug Resistance protein CP48_RS11155 PF00893 Small Multidrug Resistance protein CP48_RS11160 PF01594 AI-2E family transporter CP48_RS11165 PF02233 NAD(P) transhydrogenase beta subunit CP48_RS11170 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CP48_RS11170 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CP48_RS11170 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CP48_RS11175 PF07338 Protein of unknown function (DUF1471) CP48_RS11180 PF13520 Amino acid permease CP48_RS11190 PF06942 GlpM protein CP48_RS11195 PF00072 Response regulator receiver domain CP48_RS11195 PF00486 Transcriptional regulatory protein, C terminal CP48_RS11200 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS11200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS11200 PF00672 HAMP domain CP48_RS11205 PF05472 DNA replication terminus site-binding protein (Ter protein) CP48_RS11210 PF10415 Fumarase C C-terminus CP48_RS11210 PF00206 Lyase CP48_RS11215 PF05683 Fumarase C-terminus CP48_RS11215 PF05681 Fumarate hydratase (Fumerase) CP48_RS11220 PF01238 Phosphomannose isomerase type I CP48_RS11225 PF06097 Bacterial protein of unknown function (DUF945) CP48_RS11230 PF03573 outer membrane porin, OprD family CP48_RS11240 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CP48_RS11240 PF00703 Glycosyl hydrolases family 2 CP48_RS11240 PF02837 Glycosyl hydrolases family 2, sugar binding domain CP48_RS11245 PF00440 Bacterial regulatory proteins, tetR family CP48_RS11255 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CP48_RS11255 PF00356 Bacterial regulatory proteins, lacI family CP48_RS11260 PF00367 phosphotransferase system, EIIB CP48_RS11260 PF02378 Phosphotransferase system, EIIC CP48_RS11265 PF00155 Aminotransferase class I and II CP48_RS11270 PF00962 Adenosine/AMP deaminase CP48_RS11275 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CP48_RS11275 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CP48_RS11285 PF05321 Haemolysin expression modulating protein CP48_RS11290 PF10754 Protein of unknown function (DUF2569) CP48_RS11295 PF02508 Rnf-Nqr subunit, membrane protein CP48_RS11300 PF04060 Putative Fe-S cluster CP48_RS11305 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CP48_RS11305 PF13375 RnfC Barrel sandwich hybrid domain CP48_RS11305 PF12838 4Fe-4S dicluster domain CP48_RS11305 PF10531 SLBB domain CP48_RS11315 PF04205 FMN-binding domain CP48_RS11320 PF02508 Rnf-Nqr subunit, membrane protein CP48_RS11325 PF00633 Helix-hairpin-helix motif CP48_RS11325 PF10576 Iron-sulfur binding domain of endonuclease III CP48_RS11325 PF00730 HhH-GPD superfamily base excision DNA repair protein CP48_RS11335 PF00854 POT family CP48_RS11340 PF00043 Glutathione S-transferase, C-terminal domain CP48_RS11340 PF02798 Glutathione S-transferase, N-terminal domain CP48_RS11345 PF08543 Phosphomethylpyrimidine kinase CP48_RS11350 PF01479 S4 domain CP48_RS11350 PF00579 tRNA synthetases class I (W and Y) CP48_RS11355 PF01243 Pyridoxamine 5'-phosphate oxidase CP48_RS11355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CP48_RS11360 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CP48_RS11365 PF03702 Anhydro-N-acetylmuramic acid kinase CP48_RS11370 PF05433 Glycine zipper 2TM domain CP48_RS11375 PF01047 MarR family CP48_RS11380 PF07869 Protein of unknown function (DUF1656) CP48_RS11385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS11385 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS11390 PF04632 Fusaric acid resistance protein family CP48_RS11395 PF00080 Copper/zinc superoxide dismutase (SODC) CP48_RS11400 PF00248 Aldo/keto reductase family CP48_RS11405 PF06945 Protein of unknown function (DUF1289) CP48_RS11410 PF16925 Tetracyclin repressor-like, C-terminal domain CP48_RS11410 PF00440 Bacterial regulatory proteins, tetR family CP48_RS11415 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CP48_RS11420 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CP48_RS11425 PF00929 Exonuclease CP48_RS11430 PF00271 Helicase conserved C-terminal domain CP48_RS11430 PF08494 DEAD/H associated CP48_RS11430 PF00270 DEAD/DEAH box helicase CP48_RS11435 PF00462 Glutaredoxin CP48_RS11440 PF00877 NlpC/P60 family CP48_RS11445 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CP48_RS11445 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CP48_RS11450 PF07690 Major Facilitator Superfamily CP48_RS11460 PF00356 Bacterial regulatory proteins, lacI family CP48_RS11465 PF03466 LysR substrate binding domain CP48_RS11465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS11470 PF07690 Major Facilitator Superfamily CP48_RS11480 PF00677 Lumazine binding domain CP48_RS11485 PF01554 MatE CP48_RS11490 PF03212 Pertactin CP48_RS11490 PF16168 Adhesin of bacterial autotransporter system, probable stalk CP48_RS11505 PF08803 Putative mono-oxygenase ydhR CP48_RS11510 PF13454 FAD-NAD(P)-binding CP48_RS11520 PF01292 Prokaryotic cytochrome b561 CP48_RS11525 PF13247 4Fe-4S dicluster domain CP48_RS11535 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain CP48_RS11535 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 CP48_RS11540 PF12800 4Fe-4S binding domain CP48_RS11540 PF13247 4Fe-4S dicluster domain CP48_RS11545 PF10965 Protein of unknown function (DUF2767) CP48_RS11550 PF02887 Pyruvate kinase, alpha/beta domain CP48_RS11550 PF00224 Pyruvate kinase, barrel domain CP48_RS11555 PF04728 Lipoprotein leucine-zipper CP48_RS11560 PF01476 LysM domain CP48_RS11560 PF17969 L,D-transpeptidase C-terminal domain CP48_RS11560 PF03734 L,D-transpeptidase catalytic domain CP48_RS11565 PF02657 Fe-S metabolism associated domain CP48_RS11570 PF00266 Aminotransferase class-V CP48_RS11580 PF00005 ABC transporter CP48_RS11585 PF01458 Uncharacterized protein family (UPF0051) CP48_RS11590 PF01521 Iron-sulphur cluster biosynthesis CP48_RS11595 PF15930 Domain of unknown function CP48_RS11600 PF03061 Thioesterase superfamily CP48_RS11605 PF13183 4Fe-4S dicluster domain CP48_RS11605 PF01565 FAD binding domain CP48_RS11605 PF02913 FAD linked oxidases, C-terminal domain CP48_RS11610 PF01594 AI-2E family transporter CP48_RS11620 PF08965 Domain of unknown function (DUF1870) CP48_RS11625 PF07690 Major Facilitator Superfamily CP48_RS11630 PF07690 Major Facilitator Superfamily CP48_RS11635 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CP48_RS11635 PF08501 Shikimate dehydrogenase substrate binding domain CP48_RS11640 PF01487 Type I 3-dehydroquinase CP48_RS11645 PF01144 Coenzyme A transferase CP48_RS11650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CP48_RS11650 PF02770 Acyl-CoA dehydrogenase, middle domain CP48_RS11650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP48_RS11655 PF12833 Helix-turn-helix domain CP48_RS11655 PF02311 AraC-like ligand binding domain CP48_RS11665 PF01012 Electron transfer flavoprotein domain CP48_RS11670 PF01012 Electron transfer flavoprotein domain CP48_RS11670 PF00766 Electron transfer flavoprotein FAD-binding domain CP48_RS11675 PF01494 FAD binding domain CP48_RS11685 PF00501 AMP-binding enzyme CP48_RS11685 PF13193 AMP-binding enzyme C-terminal domain CP48_RS11690 PF02896 PEP-utilising enzyme, TIM barrel domain CP48_RS11690 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CP48_RS11690 PF00391 PEP-utilising enzyme, mobile domain CP48_RS11700 PF03618 Kinase/pyrophosphorylase CP48_RS11705 PF00793 DAHP synthetase I family CP48_RS11710 PF10636 Hemin uptake protein hemP CP48_RS11715 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CP48_RS11720 PF00563 EAL domain CP48_RS11725 PF00877 NlpC/P60 family CP48_RS11730 PF00005 ABC transporter CP48_RS11735 PF00255 Glutathione peroxidase CP48_RS11740 PF01032 FecCD transport family CP48_RS11745 PF00216 Bacterial DNA-binding protein CP48_RS11750 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CP48_RS11750 PF03147 Ferredoxin-fold anticodon binding domain CP48_RS11750 PF01588 Putative tRNA binding domain CP48_RS11750 PF03483 B3/4 domain CP48_RS11750 PF03484 tRNA synthetase B5 domain CP48_RS11755 PF01409 tRNA synthetases class II core domain (F) CP48_RS11755 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CP48_RS11765 PF00453 Ribosomal protein L20 CP48_RS11770 PF01632 Ribosomal protein L35 CP48_RS11775 PF00707 Translation initiation factor IF-3, C-terminal domain CP48_RS11775 PF05198 Translation initiation factor IF-3, N-terminal domain CP48_RS11780 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CP48_RS11780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CP48_RS11780 PF03129 Anticodon binding domain CP48_RS11780 PF02824 TGS domain CP48_RS11795 PF04338 Protein of unknown function, DUF481 CP48_RS11800 PF00294 pfkB family carbohydrate kinase CP48_RS11805 PF11080 Endoribonuclease GhoS CP48_RS11810 PF03881 Fructosamine kinase CP48_RS11815 PF14002 YniB-like protein CP48_RS11820 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS11825 PF04307 LexA-binding, inner membrane-associated putative hydrolase CP48_RS11830 PF00375 Sodium:dicarboxylate symporter family CP48_RS11840 PF10729 Cell division activator CedA CP48_RS11845 PF00199 Catalase CP48_RS11845 PF06628 Catalase-related immune-responsive CP48_RS11845 PF18011 C-terminal domain found in long catalases CP48_RS11850 PF04794 YdjC-like protein CP48_RS11855 PF11975 Family 4 glycosyl hydrolase C-terminal domain CP48_RS11855 PF02056 Family 4 glycosyl hydrolase CP48_RS11860 PF07883 Cupin domain CP48_RS11860 PF12833 Helix-turn-helix domain CP48_RS11865 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CP48_RS11870 PF02378 Phosphotransferase system, EIIC CP48_RS11875 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS11880 PF04355 SmpA / OmlA family CP48_RS11885 PF02540 NAD synthase CP48_RS11900 PF05962 HutD CP48_RS11905 PF07813 LTXXQ motif family protein CP48_RS11910 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CP48_RS11915 PF04996 Succinylarginine dihydrolase CP48_RS11920 PF00171 Aldehyde dehydrogenase family CP48_RS11925 PF04958 Arginine N-succinyltransferase beta subunit CP48_RS11930 PF00202 Aminotransferase class-III CP48_RS11935 PF03372 Endonuclease/Exonuclease/phosphatase family CP48_RS11940 PF09335 SNARE associated Golgi protein CP48_RS11950 PF09335 SNARE associated Golgi protein CP48_RS11955 PF02627 Carboxymuconolactone decarboxylase family CP48_RS11960 PF13416 Bacterial extracellular solute-binding protein CP48_RS11965 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS11970 PF00005 ABC transporter CP48_RS11975 PF00581 Rhodanese-like domain CP48_RS11980 PF01066 CDP-alcohol phosphatidyltransferase CP48_RS11985 PF00293 NUDIX domain CP48_RS11990 PF07383 Protein of unknown function (DUF1496) CP48_RS11995 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CP48_RS11995 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CP48_RS12000 PF06889 Protein of unknown function (DUF1266) CP48_RS12005 PF01131 DNA topoisomerase CP48_RS12005 PF01751 Toprim domain CP48_RS12010 PF02769 AIR synthase related protein, C-terminal domain CP48_RS12010 PF00586 AIR synthase related protein, N-terminal domain CP48_RS12020 PF00881 Nitroreductase family CP48_RS12030 PF01343 Peptidase family S49 CP48_RS12035 PF00710 Asparaginase, N-terminal CP48_RS12035 PF17763 Glutaminase/Asparaginase C-terminal domain CP48_RS12040 PF00857 Isochorismatase family CP48_RS12045 PF00083 Sugar (and other) transporter CP48_RS12050 PF00455 DeoR C terminal sensor domain CP48_RS12050 PF08220 DeoR-like helix-turn-helix domain CP48_RS12055 PF00248 Aldo/keto reductase family CP48_RS12060 PF00294 pfkB family carbohydrate kinase CP48_RS12065 PF01116 Fructose-bisphosphate aldolase class-II CP48_RS12070 PF00107 Zinc-binding dehydrogenase CP48_RS12070 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS12075 PF00083 Sugar (and other) transporter CP48_RS12085 PF07023 Protein of unknown function (DUF1315) CP48_RS12090 PF01641 SelR domain CP48_RS12095 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CP48_RS12095 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CP48_RS12100 PF01263 Aldose 1-epimerase CP48_RS12105 PF00248 Aldo/keto reductase family CP48_RS12110 PF06629 MltA-interacting protein MipA CP48_RS12115 PF08298 PrkA AAA domain CP48_RS12115 PF06798 PrkA serine protein kinase C-terminal domain CP48_RS12120 PF04285 Protein of unknown function (DUF444) CP48_RS12125 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS12125 PF17158 Membrane-associated sensor, integral membrane domain CP48_RS12130 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS12130 PF17155 Gammaproteobacterial periplasmic sensor domain CP48_RS12135 PF04073 Aminoacyl-tRNA editing domain CP48_RS12145 PF04284 Protein of unknown function (DUF441) CP48_RS12150 PF12833 Helix-turn-helix domain CP48_RS12150 PF02311 AraC-like ligand binding domain CP48_RS12155 PF07690 Major Facilitator Superfamily CP48_RS12160 PF04343 Protein of unknown function, DUF488 CP48_RS12165 PF03891 Domain of unknown function (DUF333) CP48_RS12170 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS12170 PF13185 GAF domain CP48_RS12180 PF04226 Transglycosylase associated protein CP48_RS12185 PF08956 Domain of unknown function (DUF1869) CP48_RS12190 PF09313 Domain of unknown function (DUF1971) CP48_RS12195 PF01609 Transposase DDE domain CP48_RS12200 PF09313 Domain of unknown function (DUF1971) CP48_RS12205 PF01810 LysE type translocator CP48_RS12210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS12210 PF03466 LysR substrate binding domain CP48_RS12215 PF00180 Isocitrate/isopropylmalate dehydrogenase CP48_RS12220 PF02028 BCCT, betaine/carnitine/choline family transporter CP48_RS12225 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP48_RS12225 PF00355 Rieske [2Fe-2S] domain CP48_RS12230 PF00111 2Fe-2S iron-sulfur cluster binding domain CP48_RS12230 PF00175 Oxidoreductase NAD-binding domain CP48_RS12230 PF00970 Oxidoreductase FAD-binding domain CP48_RS12235 PF01612 3'-5' exonuclease CP48_RS12235 PF00570 HRDC domain CP48_RS12240 PF00501 AMP-binding enzyme CP48_RS12240 PF13193 AMP-binding enzyme C-terminal domain CP48_RS12245 PF03843 Outer membrane lipoprotein Slp family CP48_RS12250 PF00814 Glycoprotease family CP48_RS12255 PF13307 Helicase C-terminal domain CP48_RS12255 PF04851 Type III restriction enzyme, res subunit CP48_RS12260 PF01042 Endoribonuclease L-PSP CP48_RS12270 PF08986 Domain of unknown function (DUF1889) CP48_RS12275 PF03701 Uncharacterised protein family (UPF0181) CP48_RS12280 PF04715 Anthranilate synthase component I, N terminal region CP48_RS12280 PF00425 chorismate binding enzyme CP48_RS12285 PF00293 NUDIX domain CP48_RS12290 PF03313 Serine dehydratase alpha chain CP48_RS12290 PF03315 Serine dehydratase beta chain CP48_RS12295 PF00563 EAL domain CP48_RS12295 PF12792 CSS motif domain associated with EAL CP48_RS12300 PF03471 Transporter associated domain CP48_RS12300 PF03741 Integral membrane protein TerC family CP48_RS12310 PF03610 PTS system fructose IIA component CP48_RS12310 PF03830 PTS system sorbose subfamily IIB component CP48_RS12315 PF03609 PTS system sorbose-specific iic component CP48_RS12320 PF03613 PTS system mannose/fructose/sorbose family IID component CP48_RS12325 PF06173 Protein of unknown function (DUF986) CP48_RS12335 PF02659 Putative manganese efflux pump CP48_RS12340 PF13847 Methyltransferase domain CP48_RS12345 PF00313 'Cold-shock' DNA-binding domain CP48_RS12350 PF10736 Protein of unknown function (DUF2627) CP48_RS12360 PF13974 YebO-like protein CP48_RS12365 PF13998 MgrB protein CP48_RS12370 PF13996 YobH-like protein CP48_RS12375 PF01614 Bacterial transcriptional regulator CP48_RS12375 PF09339 IclR helix-turn-helix domain CP48_RS12380 PF07690 Major Facilitator Superfamily CP48_RS12385 PF01435 Peptidase family M48 CP48_RS12390 PF00595 PDZ domain CP48_RS12390 PF03572 Peptidase family S41 CP48_RS12390 PF17804 Tail specific protease N-terminal domain CP48_RS12390 PF11818 C-terminal domain of tail specific protease (DUF3340) CP48_RS12395 PF04352 ProQ/FINO family CP48_RS12395 PF17516 ProQ C-terminal domain CP48_RS12400 PF13185 GAF domain CP48_RS12405 PF04403 Paraquat-inducible protein A CP48_RS12410 PF02470 MlaD protein CP48_RS12415 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CP48_RS12415 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CP48_RS12415 PF01189 16S rRNA methyltransferase RsmB/F CP48_RS12420 PF07351 Protein of unknown function (DUF1480) CP48_RS12425 PF07358 Protein of unknown function (DUF1482) CP48_RS12430 PF00149 Calcineurin-like phosphoesterase CP48_RS12440 PF10709 Protein of unknown function (DUF2511) CP48_RS12445 PF05425 Copper resistance protein D CP48_RS12450 PF04234 CopC domain CP48_RS12455 PF06440 DNA polymerase III, theta subunit CP48_RS12460 PF00795 Carbon-nitrogen hydrolase CP48_RS12465 PF00929 Exonuclease CP48_RS12470 PF00326 Prolyl oligopeptidase family CP48_RS12470 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CP48_RS12475 PF04391 Protein of unknown function (DUF533) CP48_RS12485 PF13995 YebF-like protein CP48_RS12490 PF07130 YebG protein CP48_RS12495 PF02222 ATP-grasp domain CP48_RS12500 PF01081 KDPG and KHG aldolase CP48_RS12505 PF00920 Dehydratase family CP48_RS12510 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CP48_RS12510 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CP48_RS12520 PF01418 Helix-turn-helix domain, rpiR family CP48_RS12520 PF01380 SIS domain CP48_RS12525 PF00224 Pyruvate kinase, barrel domain CP48_RS12525 PF02887 Pyruvate kinase, alpha/beta domain CP48_RS12530 PF03279 Bacterial lipid A biosynthesis acyltransferase CP48_RS12535 PF08525 Opacity-associated protein A N-terminal motif CP48_RS12535 PF01551 Peptidase family M23 CP48_RS12535 PF01476 LysM domain CP48_RS12540 PF01297 Zinc-uptake complex component A periplasmic CP48_RS12545 PF00005 ABC transporter CP48_RS12550 PF00950 ABC 3 transport family CP48_RS12555 PF05496 Holliday junction DNA helicase RuvB P-loop domain CP48_RS12555 PF05491 RuvB C-terminal winged helix domain CP48_RS12555 PF17864 RuvB AAA lid domain CP48_RS12560 PF01330 RuvA N terminal domain CP48_RS12560 PF07499 RuvA, C-terminal domain CP48_RS12565 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CP48_RS12570 PF02075 Crossover junction endodeoxyribonuclease RuvC CP48_RS12575 PF01709 Transcriptional regulator CP48_RS12580 PF00293 NUDIX domain CP48_RS12585 PF02938 GAD domain CP48_RS12585 PF00152 tRNA synthetases class II (D, K and N) CP48_RS12585 PF01336 OB-fold nucleic acid binding domain CP48_RS12590 PF00857 Isochorismatase family CP48_RS12605 PF07484 Phage Tail Collar Domain CP48_RS12605 PF03335 Phage tail fibre repeat CP48_RS12605 PF08400 Prophage tail fibre N-terminal CP48_RS12610 PF06316 Enterobacterial Ail/Lom protein CP48_RS12680 PF03864 Phage major capsid protein E CP48_RS12690 PF01343 Peptidase family S49 CP48_RS12700 PF02831 gpW CP48_RS12705 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CP48_RS12710 PF07471 Phage DNA packaging protein Nu1 CP48_RS12715 PF13132 Domain of unknown function (DUF3950) CP48_RS12725 PF03245 Bacteriophage Rz lysis protein CP48_RS12740 PF00959 Phage lysozyme CP48_RS12755 PF04971 Bacteriophage P21 holin S CP48_RS12790 PF12833 Helix-turn-helix domain CP48_RS12805 PF06530 Phage antitermination protein Q CP48_RS12815 PF00772 DnaB-like helicase N terminal domain CP48_RS12815 PF03796 DnaB-like helicase C terminal domain CP48_RS12820 PF01695 IstB-like ATP binding protein CP48_RS12855 PF01726 LexA DNA binding domain CP48_RS12855 PF00717 Peptidase S24-like CP48_RS12905 PF00589 Phage integrase family CP48_RS12905 PF12167 Arm DNA-binding domain CP48_RS12910 PF01904 Protein of unknown function DUF72 CP48_RS12915 PF01124 MAPEG family CP48_RS12920 PF13649 Methyltransferase domain CP48_RS12925 PF08003 Protein of unknown function (DUF1698) CP48_RS12930 PF00384 Molybdopterin oxidoreductase CP48_RS12930 PF01568 Molydopterin dinucleotide binding domain CP48_RS12930 PF18364 Molybdopterin oxidoreductase N-terminal domain CP48_RS12935 PF03264 NapC/NirT cytochrome c family, N-terminal region CP48_RS12940 PF03932 CutC family CP48_RS12945 PF06185 YecM protein CP48_RS12950 PF03485 Arginyl tRNA synthetase N terminal domain CP48_RS12950 PF05746 DALR anticodon binding domain CP48_RS12950 PF00750 tRNA synthetases class I (R) CP48_RS12955 PF07007 Lysozyme inhibitor LprI CP48_RS12960 PF06366 Flagellar protein FlhE CP48_RS12965 PF00771 FHIPEP family CP48_RS12970 PF01312 FlhB HrpN YscU SpaS Family CP48_RS12975 PF04344 Chemotaxis phosphatase, CheZ CP48_RS12980 PF00072 Response regulator receiver domain CP48_RS12985 PF00072 Response regulator receiver domain CP48_RS12985 PF01339 CheB methylesterase CP48_RS12990 PF03705 CheR methyltransferase, all-alpha domain CP48_RS12990 PF01739 CheR methyltransferase, SAM binding domain CP48_RS12995 PF00672 HAMP domain CP48_RS12995 PF02203 Tar ligand binding domain homologue CP48_RS12995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CP48_RS13000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CP48_RS13000 PF02203 Tar ligand binding domain homologue CP48_RS13000 PF00672 HAMP domain CP48_RS13005 PF01584 CheW-like domain CP48_RS13010 PF01584 CheW-like domain CP48_RS13010 PF09078 CheY binding CP48_RS13010 PF02895 Signal transducing histidine kinase, homodimeric domain CP48_RS13010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS13010 PF01627 Hpt domain CP48_RS13015 PF00691 OmpA family CP48_RS13015 PF13677 Membrane MotB of proton-channel complex MotA/MotB CP48_RS13020 PF01618 MotA/TolQ/ExbB proton channel family CP48_RS13025 PF05280 Flagellar transcriptional activator (FlhC) CP48_RS13030 PF05247 Flagellar transcriptional activator (FlhD) CP48_RS13035 PF00582 Universal stress protein family CP48_RS13040 PF00982 Glycosyltransferase family 20 CP48_RS13045 PF02358 Trehalose-phosphatase CP48_RS13050 PF02653 Branched-chain amino acid transport system / permease component CP48_RS13055 PF00005 ABC transporter CP48_RS13060 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CP48_RS13065 PF00210 Ferritin-like domain CP48_RS13070 PF10964 Protein of unknown function (DUF2766) CP48_RS13080 PF13992 YecR-like lipoprotein CP48_RS13085 PF00210 Ferritin-like domain CP48_RS13090 PF10678 Protein of unknown function (DUF2492) CP48_RS13095 PF03222 Tryptophan/tyrosine permease family CP48_RS13100 PF03695 Uncharacterised protein family (UPF0149) CP48_RS13100 PF02810 SEC-C motif CP48_RS13125 PF01609 Transposase DDE domain CP48_RS13130 PF08676 MutL C terminal dimerisation domain CP48_RS13130 PF01119 DNA mismatch repair protein, C-terminal domain CP48_RS13135 PF04546 Sigma-70, non-essential region CP48_RS13135 PF03979 Sigma-70 factor, region 1.1 CP48_RS13135 PF00140 Sigma-70 factor, region 1.2 CP48_RS13135 PF04542 Sigma-70 region 2 CP48_RS13135 PF04539 Sigma-70 region 3 CP48_RS13135 PF04545 Sigma-70, region 4 CP48_RS13160 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CP48_RS13160 PF18766 SWI2/SNF2 ATPase CP48_RS13160 PF11867 Domain of unknown function (DUF3387) CP48_RS13165 PF03695 Uncharacterised protein family (UPF0149) CP48_RS13165 PF02810 SEC-C motif CP48_RS13175 PF12161 HsdM N-terminal domain CP48_RS13175 PF02384 N-6 DNA Methylase CP48_RS13190 PF02899 Phage integrase, N-terminal SAM-like domain CP48_RS13190 PF00589 Phage integrase family CP48_RS13265 PF01066 CDP-alcohol phosphatidyltransferase CP48_RS13270 PF08459 UvrC Helix-hairpin-helix N-terminal CP48_RS13270 PF01541 GIY-YIG catalytic domain CP48_RS13270 PF02151 UvrB/uvrC motif CP48_RS13275 PF00196 Bacterial regulatory proteins, luxR family CP48_RS13275 PF00072 Response regulator receiver domain CP48_RS13285 PF10769 Protein of unknown function (DUF2594) CP48_RS13290 PF03472 Autoinducer binding domain CP48_RS13290 PF00196 Bacterial regulatory proteins, luxR family CP48_RS13295 PF00005 ABC transporter CP48_RS13300 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS13305 PF00291 Pyridoxal-phosphate dependent enzyme CP48_RS13310 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS13315 PF02899 Phage integrase, N-terminal SAM-like domain CP48_RS13320 PF04545 Sigma-70, region 4 CP48_RS13320 PF04539 Sigma-70 region 3 CP48_RS13320 PF04542 Sigma-70 region 2 CP48_RS13325 PF00669 Bacterial flagellin N-terminal helical region CP48_RS13325 PF00700 Bacterial flagellin C-terminal helical region CP48_RS13325 PF08884 Flagellin D3 domain CP48_RS13330 PF07196 Flagellin hook IN motif CP48_RS13330 PF07195 Flagellar hook-associated protein 2 C-terminus CP48_RS13330 PF02465 Flagellar hook-associated protein 2 N-terminus CP48_RS13335 PF02561 Flagellar protein FliS CP48_RS13340 PF05400 Flagellar protein FliT CP48_RS13345 PF02806 Alpha amylase, C-terminal all-beta domain CP48_RS13345 PF00128 Alpha amylase, catalytic domain CP48_RS13350 PF13987 YedD-like protein CP48_RS13355 PF04143 Sulphur transport CP48_RS13360 PF01206 Sulfurtransferase TusA CP48_RS13365 PF02586 SOS response associated peptidase (SRAP) CP48_RS13370 PF07282 Putative transposase DNA-binding domain CP48_RS13370 PF01385 Probable transposase CP48_RS13370 PF12323 Helix-turn-helix domain CP48_RS13380 PF12833 Helix-turn-helix domain CP48_RS13385 PF01161 Phosphatidylethanolamine-binding protein CP48_RS13390 PF00893 Small Multidrug Resistance protein CP48_RS13400 PF02049 Flagellar hook-basal body complex protein FliE CP48_RS13405 PF01514 Secretory protein of YscJ/FliF family CP48_RS13405 PF08345 Flagellar M-ring protein C-terminal CP48_RS13410 PF14842 FliG N-terminal domain CP48_RS13410 PF14841 FliG middle domain CP48_RS13410 PF01706 FliG C-terminal domain CP48_RS13415 PF02108 Flagellar assembly protein FliH CP48_RS13420 PF18269 T3SS EscN ATPase C-terminal domain CP48_RS13420 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP48_RS13425 PF02050 Flagellar FliJ protein CP48_RS13430 PF02120 Flagellar hook-length control protein FliK CP48_RS13435 PF03748 Flagellar basal body-associated protein FliL CP48_RS13440 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CP48_RS13440 PF02154 Flagellar motor switch protein FliM CP48_RS13445 PF16973 Flagellar motor switch protein FliN N-terminal CP48_RS13445 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CP48_RS13450 PF04347 Flagellar biosynthesis protein, FliO CP48_RS13455 PF00813 FliP family CP48_RS13460 PF01313 Bacterial export proteins, family 3 CP48_RS13465 PF01311 Bacterial export proteins, family 1 CP48_RS13470 PF00196 Bacterial regulatory proteins, luxR family CP48_RS13475 PF10781 Dextransucrase DSRB CP48_RS13480 PF10733 Protein of unknown function (DUF2525) CP48_RS13490 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS13490 PF17151 Periplasmic sensor domain CP48_RS13495 PF09926 Uncharacterized small protein (DUF2158) CP48_RS13500 PF05661 Protein of unknown function (DUF808) CP48_RS13505 PF00892 EamA-like transporter family CP48_RS13510 PF03852 DNA mismatch endonuclease Vsr CP48_RS13515 PF18284 DNA methylase N-terminal domain CP48_RS13515 PF00145 C-5 cytosine-specific DNA methylase CP48_RS13520 PF01966 HD domain CP48_RS13530 PF00267 Gram-negative porin CP48_RS13545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS13545 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS13550 PF00486 Transcriptional regulatory protein, C terminal CP48_RS13550 PF00072 Response regulator receiver domain CP48_RS13555 PF00576 HIUase/Transthyretin family CP48_RS13560 PF00174 Oxidoreductase molybdopterin binding domain CP48_RS13565 PF01794 Ferric reductase like transmembrane component CP48_RS13570 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CP48_RS13580 PF10685 Stress-induced bacterial acidophilic repeat motif CP48_RS13585 PF05974 Domain of unknown function (DUF892) CP48_RS13590 PF05974 Domain of unknown function (DUF892) CP48_RS13595 PF05067 Manganese containing catalase CP48_RS13610 PF08400 Prophage tail fibre N-terminal CP48_RS13610 PF03335 Phage tail fibre repeat CP48_RS13610 PF07484 Phage Tail Collar Domain CP48_RS13645 PF17482 Phage tail sheath C-terminal domain CP48_RS13645 PF04984 Phage tail sheath protein subtilisin-like domain CP48_RS13700 PF03864 Phage major capsid protein E CP48_RS13720 PF02831 gpW CP48_RS13725 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CP48_RS13730 PF07471 Phage DNA packaging protein Nu1 CP48_RS13790 PF12833 Helix-turn-helix domain CP48_RS13800 PF05866 Endodeoxyribonuclease RusA CP48_RS13805 PF06147 Protein of unknown function (DUF968) CP48_RS13815 PF01848 Hok/gef family CP48_RS13830 PF07789 Protein of unknown function (DUF1627) CP48_RS13855 PF01381 Helix-turn-helix CP48_RS13860 PF07151 Protein of unknown function (DUF1391) CP48_RS13880 PF10549 ORF11CD3 domain CP48_RS13880 PF09669 Phage regulatory protein Rha (Phage_pRha) CP48_RS13890 PF07358 Protein of unknown function (DUF1482) CP48_RS13915 PF06167 Glucose-regulated metallo-peptidase M90 CP48_RS13925 PF00589 Phage integrase family CP48_RS13925 PF13356 Arm DNA-binding domain CP48_RS13930 PF00425 chorismate binding enzyme CP48_RS13935 PF07690 Major Facilitator Superfamily CP48_RS13940 PF00005 ABC transporter CP48_RS13940 PF00664 ABC transporter transmembrane region CP48_RS13945 PF04954 Siderophore-interacting protein CP48_RS13945 PF08021 Siderophore-interacting FAD-binding domain CP48_RS13945 PF00005 ABC transporter CP48_RS13945 PF00664 ABC transporter transmembrane region CP48_RS13955 PF00550 Phosphopantetheine attachment site CP48_RS13955 PF00668 Condensation domain CP48_RS13955 PF00501 AMP-binding enzyme CP48_RS13955 PF08242 Methyltransferase domain CP48_RS13960 PF00550 Phosphopantetheine attachment site CP48_RS13960 PF00109 Beta-ketoacyl synthase, N-terminal domain CP48_RS13960 PF16197 Ketoacyl-synthetase C-terminal extension CP48_RS13960 PF00668 Condensation domain CP48_RS13960 PF00698 Acyl transferase domain CP48_RS13960 PF02801 Beta-ketoacyl synthase, C-terminal domain CP48_RS13970 PF00975 Thioesterase domain CP48_RS13975 PF13193 AMP-binding enzyme C-terminal domain CP48_RS13975 PF00501 AMP-binding enzyme CP48_RS13980 PF07715 TonB-dependent Receptor Plug Domain CP48_RS13980 PF00593 TonB dependent receptor CP48_RS13985 PF02369 Bacterial Ig-like domain (group 1) CP48_RS13985 PF09134 Invasin, domain 3 CP48_RS13985 PF11924 Inverse autotransporter, beta-domain CP48_RS13990 PF02369 Bacterial Ig-like domain (group 1) CP48_RS13990 PF09134 Invasin, domain 3 CP48_RS13990 PF11924 Inverse autotransporter, beta-domain CP48_RS13995 PF09134 Invasin, domain 3 CP48_RS13995 PF02369 Bacterial Ig-like domain (group 1) CP48_RS13995 PF11924 Inverse autotransporter, beta-domain CP48_RS14005 PF07690 Major Facilitator Superfamily CP48_RS14005 PF00083 Sugar (and other) transporter CP48_RS14010 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CP48_RS14010 PF01048 Phosphorylase superfamily CP48_RS14015 PF01709 Transcriptional regulator CP48_RS14025 PF01554 MatE CP48_RS14035 PF03466 LysR substrate binding domain CP48_RS14035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS14040 PF03466 LysR substrate binding domain CP48_RS14050 PF17969 L,D-transpeptidase C-terminal domain CP48_RS14050 PF03734 L,D-transpeptidase catalytic domain CP48_RS14055 PF02277 Phosphoribosyltransferase CP48_RS14060 PF02654 Cobalamin-5-phosphate synthase CP48_RS14065 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CP48_RS14080 PF00294 pfkB family carbohydrate kinase CP48_RS14095 PF02126 Phosphotriesterase family CP48_RS14135 PF01527 Transposase CP48_RS14140 PF13276 HTH-like domain CP48_RS14140 PF00665 Integrase core domain CP48_RS14180 PF00665 Integrase core domain CP48_RS14185 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS14185 PF13007 Transposase C of IS166 homeodomain CP48_RS14185 PF03050 Transposase IS66 family CP48_RS14185 PF13817 IS66 C-terminal element CP48_RS14195 PF05717 IS66 Orf2 like protein CP48_RS14205 PF00665 Integrase core domain CP48_RS14220 PF00665 Integrase core domain CP48_RS14220 PF01527 Transposase CP48_RS14220 PF13276 HTH-like domain CP48_RS14225 PF05717 IS66 Orf2 like protein CP48_RS14230 PF13007 Transposase C of IS166 homeodomain CP48_RS14230 PF13817 IS66 C-terminal element CP48_RS14230 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS14230 PF03050 Transposase IS66 family CP48_RS14240 PF13990 YjcZ-like protein CP48_RS14260 PF06067 Domain of unknown function (DUF932) CP48_RS14265 PF03230 Antirestriction protein CP48_RS14270 PF04002 RadC-like JAB domain CP48_RS14275 PF06174 Protein of unknown function (DUF987) CP48_RS14280 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CP48_RS14285 PF06755 CbtA_toxin of type IV toxin-antitoxin system CP48_RS14300 PF10662 Ethanolamine utilisation - propanediol utilisation CP48_RS14305 PF04363 Protein of unknown function (DUF496) CP48_RS14310 PF04632 Fusaric acid resistance protein family CP48_RS14315 PF06445 GyrI-like small molecule binding domain CP48_RS14320 PF00768 D-alanyl-D-alanine carboxypeptidase CP48_RS14320 PF07943 Penicillin-binding protein 5, C-terminal domain CP48_RS14325 PF00929 Exonuclease CP48_RS14325 PF08411 Exonuclease C-terminal CP48_RS14330 PF01206 Sulfurtransferase TusA CP48_RS14335 PF04143 Sulphur transport CP48_RS14340 PF13520 Amino acid permease CP48_RS14345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS14345 PF03466 LysR substrate binding domain CP48_RS14350 PF01370 NAD dependent epimerase/dehydratase family CP48_RS14355 PF08029 HisG, C-terminal domain CP48_RS14355 PF01634 ATP phosphoribosyltransferase CP48_RS14360 PF00815 Histidinol dehydrogenase CP48_RS14365 PF00155 Aminotransferase class I and II CP48_RS14370 PF00475 Imidazoleglycerol-phosphate dehydratase CP48_RS14375 PF00117 Glutamine amidotransferase class-I CP48_RS14380 PF00977 Histidine biosynthesis protein CP48_RS14385 PF00977 Histidine biosynthesis protein CP48_RS14390 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CP48_RS14390 PF01502 Phosphoribosyl-AMP cyclohydrolase CP48_RS14395 PF02706 Chain length determinant protein CP48_RS14400 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CP48_RS14400 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CP48_RS14400 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CP48_RS14405 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CP48_RS14405 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CP48_RS14410 PF03808 Glycosyl transferase WecB/TagA/CpsF family CP48_RS14435 PF08666 SAF domain CP48_RS14435 PF03102 NeuB family CP48_RS14440 PF02348 Cytidylyltransferase CP48_RS14445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CP48_RS14450 PF02719 Polysaccharide biosynthesis protein CP48_RS14455 PF00483 Nucleotidyl transferase CP48_RS14465 PF00534 Glycosyl transferases group 1 CP48_RS14465 PF13439 Glycosyltransferase Family 4 CP48_RS14470 PF04230 Polysaccharide pyruvyl transferase CP48_RS14480 PF02397 Bacterial sugar transferase CP48_RS14485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CP48_RS14485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CP48_RS14485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CP48_RS14485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CP48_RS14490 PF00483 Nucleotidyl transferase CP48_RS14490 PF01050 Mannose-6-phosphate isomerase CP48_RS14495 PF00534 Glycosyl transferases group 1 CP48_RS14495 PF13579 Glycosyl transferase 4-like domain CP48_RS14500 PF00293 NUDIX domain CP48_RS14505 PF01370 NAD dependent epimerase/dehydratase family CP48_RS14510 PF16363 GDP-mannose 4,6 dehydratase CP48_RS14515 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS14520 PF00535 Glycosyl transferase family 2 CP48_RS14530 PF13439 Glycosyltransferase Family 4 CP48_RS14530 PF00534 Glycosyl transferases group 1 CP48_RS14535 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS14540 PF00535 Glycosyl transferase family 2 CP48_RS14545 PF13807 G-rich domain on putative tyrosine kinase CP48_RS14545 PF13614 AAA domain CP48_RS14545 PF02706 Chain length determinant protein CP48_RS14550 PF01451 Low molecular weight phosphotyrosine protein phosphatase CP48_RS14555 PF02563 Polysaccharide biosynthesis/export protein CP48_RS14555 PF10531 SLBB domain CP48_RS14555 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CP48_RS14560 PF03471 Transporter associated domain CP48_RS14560 PF03741 Integral membrane protein TerC family CP48_RS14560 PF00571 CBS domain CP48_RS14565 PF05170 AsmA family CP48_RS14570 PF00692 dUTPase CP48_RS14575 PF00485 Phosphoribulokinase / Uridine kinase family CP48_RS14580 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS14580 PF00563 EAL domain CP48_RS14580 PF08448 PAS fold CP48_RS14580 PF08447 PAS fold CP48_RS14580 PF13426 PAS domain CP48_RS14580 PF05231 MASE1 CP48_RS14585 PF06029 AlkA N-terminal domain CP48_RS14585 PF00730 HhH-GPD superfamily base excision DNA repair protein CP48_RS14590 PF00012 Hsp70 protein CP48_RS14605 PF00092 von Willebrand factor type A domain CP48_RS14610 PF01609 Transposase DDE domain CP48_RS14615 PF13533 Biotin-lipoyl like CP48_RS14620 PF00873 AcrB/AcrD/AcrF family CP48_RS14625 PF00873 AcrB/AcrD/AcrF family CP48_RS14630 PF07690 Major Facilitator Superfamily CP48_RS14635 PF00672 HAMP domain CP48_RS14635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS14635 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS14640 PF00486 Transcriptional regulatory protein, C terminal CP48_RS14640 PF00072 Response regulator receiver domain CP48_RS14645 PF07411 Domain of unknown function (DUF1508) CP48_RS14650 PF01136 Peptidase family U32 CP48_RS14650 PF16325 Peptidase family U32 C-terminal domain CP48_RS14665 PF00781 Diacylglycerol kinase catalytic domain CP48_RS14670 PF08220 DeoR-like helix-turn-helix domain CP48_RS14675 PF00107 Zinc-binding dehydrogenase CP48_RS14675 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS14680 PF03611 PTS system sugar-specific permease component CP48_RS14685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS14690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS14695 PF08013 Tagatose 6 phosphate kinase CP48_RS14700 PF01116 Fructose-bisphosphate aldolase class-II CP48_RS14705 PF01791 DeoC/LacD family aldolase CP48_RS14710 PF03825 Nucleoside H+ symporter CP48_RS14715 PF03747 ADP-ribosylglycohydrolase CP48_RS14720 PF00294 pfkB family carbohydrate kinase CP48_RS14725 PF07702 UTRA domain CP48_RS14725 PF00392 Bacterial regulatory proteins, gntR family CP48_RS14730 PF01183 Glycosyl hydrolases family 25 CP48_RS14735 PF08543 Phosphomethylpyrimidine kinase CP48_RS14740 PF02110 Hydroxyethylthiazole kinase family CP48_RS14745 PF02583 Metal-sensitive transcriptional repressor CP48_RS14750 PF03824 High-affinity nickel-transport protein CP48_RS14755 PF11776 Nickel/cobalt transporter regulator CP48_RS14760 PF00419 Fimbrial protein CP48_RS14765 PF13953 PapC C-terminal domain CP48_RS14765 PF13954 PapC N-terminal domain CP48_RS14765 PF00577 Outer membrane usher protein CP48_RS14770 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS14770 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS14775 PF00419 Fimbrial protein CP48_RS14785 PF10836 Protein of unknown function (DUF2574) CP48_RS14790 PF10609 NUBPL iron-transfer P-loop NTPase CP48_RS14795 PF09334 tRNA synthetases class I (M) CP48_RS14795 PF01588 Putative tRNA binding domain CP48_RS14800 PF13569 Domain of unknown function (DUF4132) CP48_RS14805 PF13569 Domain of unknown function (DUF4132) CP48_RS14810 PF13569 Domain of unknown function (DUF4132) CP48_RS14830 PF07728 AAA domain (dynein-related subfamily) CP48_RS14845 PF05762 VWA domain containing CoxE-like protein CP48_RS14850 PF04434 SWIM zinc finger CP48_RS14855 PF06998 Protein of unknown function (DUF1307) CP48_RS14860 PF07308 Protein of unknown function (DUF1456) CP48_RS14865 PF00072 Response regulator receiver domain CP48_RS14865 PF04397 LytTr DNA-binding domain CP48_RS14870 PF06580 Histidine kinase CP48_RS14870 PF07694 5TMR of 5TMR-LYT CP48_RS14875 PF13411 MerR HTH family regulatory protein CP48_RS14885 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS14890 PF00005 ABC transporter CP48_RS14895 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS14900 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CP48_RS14905 PF14310 Fibronectin type III-like domain CP48_RS14905 PF00933 Glycosyl hydrolase family 3 N terminal domain CP48_RS14905 PF01915 Glycosyl hydrolase family 3 C-terminal domain CP48_RS14910 PF09330 D-lactate dehydrogenase, membrane binding CP48_RS14910 PF01565 FAD binding domain CP48_RS14915 PF00768 D-alanyl-D-alanine carboxypeptidase CP48_RS14920 PF04893 Yip1 domain CP48_RS14925 PF09335 SNARE associated Golgi protein CP48_RS14935 PF02321 Outer membrane efflux protein CP48_RS14945 PF01207 Dihydrouridine synthase (Dus) CP48_RS14950 PF03788 LrgA family CP48_RS14955 PF04172 LrgB-like family CP48_RS14960 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CP48_RS14960 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CP48_RS14965 PF02698 DUF218 domain CP48_RS14970 PF10808 Protein of unknown function (DUF2542) CP48_RS14975 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS14975 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CP48_RS14980 PF01180 Dihydroorotate dehydrogenase CP48_RS14985 PF02653 Branched-chain amino acid transport system / permease component CP48_RS14990 PF00005 ABC transporter CP48_RS14995 PF13407 Periplasmic binding protein domain CP48_RS15000 PF00356 Bacterial regulatory proteins, lacI family CP48_RS15010 PF04235 Protein of unknown function (DUF418) CP48_RS15015 PF01227 GTP cyclohydrolase I CP48_RS15025 PF00756 Putative esterase CP48_RS15030 PF00593 TonB dependent receptor CP48_RS15030 PF07715 TonB-dependent Receptor Plug Domain CP48_RS15040 PF00324 Amino acid permease CP48_RS15045 PF03466 LysR substrate binding domain CP48_RS15045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS15050 PF03601 Conserved hypothetical protein 698 CP48_RS15055 PF01261 Xylose isomerase-like TIM barrel CP48_RS15060 PF00294 pfkB family carbohydrate kinase CP48_RS15065 PF07662 Na+ dependent nucleoside transporter C-terminus CP48_RS15065 PF01773 Na+ dependent nucleoside transporter N-terminus CP48_RS15070 PF01156 Inosine-uridine preferring nucleoside hydrolase CP48_RS15075 PF00027 Cyclic nucleotide-binding domain CP48_RS15080 PF01773 Na+ dependent nucleoside transporter N-terminus CP48_RS15080 PF07662 Na+ dependent nucleoside transporter C-terminus CP48_RS15085 PF04227 Indigoidine synthase A like protein CP48_RS15090 PF00294 pfkB family carbohydrate kinase CP48_RS15095 PF02378 Phosphotransferase system, EIIC CP48_RS15095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS15100 PF00294 pfkB family carbohydrate kinase CP48_RS15105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS15105 PF00381 PTS HPr component phosphorylation site CP48_RS15110 PF07690 Major Facilitator Superfamily CP48_RS15115 PF03692 Putative zinc- or iron-chelating domain CP48_RS15120 PF08207 Elongation factor P (EF-P) KOW-like domain CP48_RS15120 PF09285 Elongation factor P, C-terminal CP48_RS15120 PF01132 Elongation factor P (EF-P) OB domain CP48_RS15125 PF01232 Mannitol dehydrogenase Rossmann domain CP48_RS15125 PF08125 Mannitol dehydrogenase C-terminal domain CP48_RS15130 PF07683 Cobalamin synthesis protein cobW C-terminal domain CP48_RS15130 PF02492 CobW/HypB/UreG, nucleotide-binding domain CP48_RS15135 PF01569 PAP2 superfamily CP48_RS15140 PF00877 NlpC/P60 family CP48_RS15145 PF12792 CSS motif domain associated with EAL CP48_RS15145 PF00563 EAL domain CP48_RS15150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS15155 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS15160 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS15160 PF12911 N-terminal TM domain of oligopeptide transport permease C CP48_RS15165 PF00005 ABC transporter CP48_RS15165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP48_RS15170 PF13989 YejG-like protein CP48_RS15175 PF07690 Major Facilitator Superfamily CP48_RS15180 PF00849 RNA pseudouridylate synthase CP48_RS15180 PF01479 S4 domain CP48_RS15185 PF04851 Type III restriction enzyme, res subunit CP48_RS15185 PF00271 Helicase conserved C-terminal domain CP48_RS15190 PF01386 Ribosomal L25p family CP48_RS15195 PF04245 37-kD nucleoid-associated bacterial protein CP48_RS15200 PF07208 Protein of unknown function (DUF1414) CP48_RS15205 PF00884 Sulfatase CP48_RS15205 PF11893 Domain of unknown function (DUF3413) CP48_RS15215 PF00589 Phage integrase family CP48_RS15215 PF13356 Arm DNA-binding domain CP48_RS15270 PF00574 Clp protease CP48_RS15290 PF06069 PerC transcriptional activator CP48_RS15300 PF03797 Autotransporter beta-domain CP48_RS15300 PF16168 Adhesin of bacterial autotransporter system, probable stalk CP48_RS15300 PF03212 Pertactin CP48_RS15305 PF03797 Autotransporter beta-domain CP48_RS15305 PF03212 Pertactin CP48_RS15305 PF16168 Adhesin of bacterial autotransporter system, probable stalk CP48_RS15310 PF03797 Autotransporter beta-domain CP48_RS15310 PF03212 Pertactin CP48_RS15310 PF16168 Adhesin of bacterial autotransporter system, probable stalk CP48_RS15320 PF00072 Response regulator receiver domain CP48_RS15320 PF00196 Bacterial regulatory proteins, luxR family CP48_RS15325 PF03918 Cytochrome C biogenesis protein CP48_RS15330 PF08534 Redoxin CP48_RS15335 PF01578 Cytochrome C assembly protein CP48_RS15335 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CP48_RS15340 PF03100 CcmE CP48_RS15345 PF04995 Heme exporter protein D (CcmD) CP48_RS15350 PF01578 Cytochrome C assembly protein CP48_RS15355 PF03379 CcmB protein CP48_RS15360 PF00005 ABC transporter CP48_RS15365 PF03264 NapC/NirT cytochrome c family, N-terminal region CP48_RS15370 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CP48_RS15375 PF13237 4Fe-4S dicluster domain CP48_RS15375 PF12801 4Fe-4S binding domain CP48_RS15380 PF12800 4Fe-4S binding domain CP48_RS15380 PF12838 4Fe-4S dicluster domain CP48_RS15385 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS15385 PF00384 Molybdopterin oxidoreductase CP48_RS15385 PF01568 Molydopterin dinucleotide binding domain CP48_RS15390 PF03927 NapD protein CP48_RS15395 PF00037 4Fe-4S binding domain CP48_RS15395 PF12800 4Fe-4S binding domain CP48_RS15395 PF13187 4Fe-4S dicluster domain CP48_RS15405 PF03974 Ecotin CP48_RS15410 PF06039 Malate:quinone oxidoreductase (Mqo) CP48_RS15415 PF00005 ABC transporter CP48_RS15420 PF13532 2OG-Fe(II) oxygenase superfamily CP48_RS15425 PF12833 Helix-turn-helix domain CP48_RS15425 PF02805 Metal binding domain of Ada CP48_RS15425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CP48_RS15425 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CP48_RS15430 PF02424 ApbE family CP48_RS15435 PF00267 Gram-negative porin CP48_RS15450 PF16359 RcsD-ABL domain CP48_RS15450 PF01627 Hpt domain CP48_RS15450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS15455 PF00196 Bacterial regulatory proteins, luxR family CP48_RS15455 PF00072 Response regulator receiver domain CP48_RS15460 PF09456 RcsC Alpha-Beta-Loop (ABL) CP48_RS15460 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS15460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS15460 PF00072 Response regulator receiver domain CP48_RS15465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS15465 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS15465 PF00989 PAS fold CP48_RS15470 PF02954 Bacterial regulatory protein, Fis family CP48_RS15470 PF00072 Response regulator receiver domain CP48_RS15470 PF00158 Sigma-54 interaction domain CP48_RS15475 PF01144 Coenzyme A transferase CP48_RS15480 PF01144 Coenzyme A transferase CP48_RS15485 PF02667 Short chain fatty acid transporter CP48_RS15490 PF02803 Thiolase, C-terminal domain CP48_RS15490 PF00108 Thiolase, N-terminal domain CP48_RS15495 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CP48_RS15500 PF10062 Predicted secreted protein (DUF2300) CP48_RS15500 PF08486 Stage II sporulation protein CP48_RS15505 PF00207 Alpha-2-macroglobulin family CP48_RS15505 PF07703 Alpha-2-macroglobulin bait region domain CP48_RS15505 PF01835 MG2 domain CP48_RS15510 PF06672 Protein of unknown function (DUF1175) CP48_RS15515 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) CP48_RS15520 PF03989 DNA gyrase C-terminal domain, beta-propeller CP48_RS15520 PF00521 DNA gyrase/topoisomerase IV, subunit A CP48_RS15530 PF12951 Passenger-associated-transport-repeat CP48_RS15530 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat CP48_RS15530 PF03797 Autotransporter beta-domain CP48_RS15540 PF03477 ATP cone domain CP48_RS15540 PF02867 Ribonucleotide reductase, barrel domain CP48_RS15540 PF00317 Ribonucleotide reductase, all-alpha domain CP48_RS15545 PF00268 Ribonucleotide reductase, small chain CP48_RS15550 PF00111 2Fe-2S iron-sulfur cluster binding domain CP48_RS15565 PF03009 Glycerophosphoryl diester phosphodiesterase family CP48_RS15570 PF07690 Major Facilitator Superfamily CP48_RS15575 PF04324 BFD-like [2Fe-2S] binding domain CP48_RS15575 PF01266 FAD dependent oxidoreductase CP48_RS15580 PF00890 FAD binding domain CP48_RS15585 PF13183 4Fe-4S dicluster domain CP48_RS15585 PF02754 Cysteine-rich domain CP48_RS15590 PF04754 Putative transposase, YhgA-like CP48_RS15595 PF03328 HpcH/HpaI aldolase/citrate lyase family CP48_RS15600 PF07690 Major Facilitator Superfamily CP48_RS15605 PF13378 Enolase C-terminal domain-like CP48_RS15605 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CP48_RS15610 PF01614 Bacterial transcriptional regulator CP48_RS15610 PF09339 IclR helix-turn-helix domain CP48_RS15615 PF00994 Probable molybdopterin binding domain CP48_RS15620 PF07437 YfaZ precursor CP48_RS15625 PF00293 NUDIX domain CP48_RS15630 PF00300 Histidine phosphatase superfamily (branch 1) CP48_RS15635 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CP48_RS15640 PF00535 Glycosyl transferase family 2 CP48_RS15645 PF00551 Formyl transferase CP48_RS15645 PF02911 Formyl transferase, C-terminal domain CP48_RS15645 PF01370 NAD dependent epimerase/dehydratase family CP48_RS15650 PF01522 Polysaccharide deacetylase CP48_RS15655 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CP48_RS15660 PF00892 EamA-like transporter family CP48_RS15675 PF00501 AMP-binding enzyme CP48_RS15675 PF13193 AMP-binding enzyme C-terminal domain CP48_RS15680 PF13378 Enolase C-terminal domain-like CP48_RS15685 PF00378 Enoyl-CoA hydratase/isomerase CP48_RS15690 PF12697 Alpha/beta hydrolase family CP48_RS15695 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP48_RS15695 PF16582 Middle domain of thiamine pyrophosphate CP48_RS15695 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP48_RS15700 PF00425 chorismate binding enzyme CP48_RS15705 PF05957 Bacterial protein of unknown function (DUF883) CP48_RS15710 PF13673 Acetyltransferase (GNAT) domain CP48_RS15715 PF12706 Beta-lactamase superfamily domain CP48_RS15720 PF02902 Ulp1 protease family, C-terminal catalytic domain CP48_RS15725 PF04389 Peptidase family M28 CP48_RS15730 PF08974 Domain of unknown function (DUF1877) CP48_RS15735 PF00361 Proton-conducting membrane transporter CP48_RS15740 PF00361 Proton-conducting membrane transporter CP48_RS15745 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CP48_RS15745 PF00361 Proton-conducting membrane transporter CP48_RS15750 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CP48_RS15755 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CP48_RS15760 PF12838 4Fe-4S dicluster domain CP48_RS15765 PF00146 NADH dehydrogenase CP48_RS15770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS15770 PF00384 Molybdopterin oxidoreductase CP48_RS15770 PF01568 Molydopterin dinucleotide binding domain CP48_RS15770 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CP48_RS15775 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CP48_RS15775 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CP48_RS15775 PF10531 SLBB domain CP48_RS15785 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CP48_RS15785 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CP48_RS15790 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CP48_RS15795 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CP48_RS15800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS15800 PF03466 LysR substrate binding domain CP48_RS15805 PF00155 Aminotransferase class I and II CP48_RS15815 PF03600 Citrate transporter CP48_RS15815 PF02080 TrkA-C domain CP48_RS15820 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS15825 PF03887 YfbU domain CP48_RS15830 PF04217 Protein of unknown function, DUF412 CP48_RS15840 PF00871 Acetokinase family CP48_RS15845 PF07085 DRTGG domain CP48_RS15845 PF01515 Phosphate acetyl/butaryl transferase CP48_RS15850 PF03606 C4-dicarboxylate anaerobic carrier CP48_RS15855 PF00293 NUDIX domain CP48_RS15860 PF12850 Calcineurin-like phosphoesterase superfamily domain CP48_RS15865 PF14834 Glutathione S-transferase, C-terminal domain CP48_RS15865 PF02798 Glutathione S-transferase, N-terminal domain CP48_RS15870 PF00043 Glutathione S-transferase, C-terminal domain CP48_RS15870 PF02798 Glutathione S-transferase, N-terminal domain CP48_RS15875 PF02152 Dihydroneopterin aldolase CP48_RS15880 PF08338 Domain of unknown function (DUF1731) CP48_RS15880 PF01370 NAD dependent epimerase/dehydratase family CP48_RS15890 PF00005 ABC transporter CP48_RS15895 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS15900 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS15905 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS15910 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS15915 PF02441 Flavoprotein CP48_RS15920 PF00156 Phosphoribosyl transferase domain CP48_RS15925 PF02674 Colicin V production protein CP48_RS15930 PF05036 Sporulation related domain CP48_RS15935 PF02875 Mur ligase family, glutamate ligase domain CP48_RS15935 PF08245 Mur ligase middle domain CP48_RS15940 PF01039 Carboxyl transferase domain CP48_RS15940 PF17848 Acetyl-coA carboxylase zinc finger domain CP48_RS15945 PF09335 SNARE associated Golgi protein CP48_RS15950 PF01416 tRNA pseudouridine synthase CP48_RS15955 PF01118 Semialdehyde dehydrogenase, NAD binding domain CP48_RS15955 PF02774 Semialdehyde dehydrogenase, dimerisation domain CP48_RS15960 PF11890 Domain of unknown function (DUF3410) CP48_RS15960 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CP48_RS15960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CP48_RS15970 PF07690 Major Facilitator Superfamily CP48_RS15975 PF02801 Beta-ketoacyl synthase, C-terminal domain CP48_RS15975 PF00109 Beta-ketoacyl synthase, N-terminal domain CP48_RS15980 PF01266 FAD dependent oxidoreductase CP48_RS15980 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CP48_RS15985 PF08891 YfcL protein CP48_RS15990 PF04315 Elongation factor P hydroxylase CP48_RS15995 PF01925 Sulfite exporter TauE/SafE CP48_RS16000 PF03411 Penicillin-insensitive murein endopeptidase CP48_RS16005 PF01264 Chorismate synthase CP48_RS16010 PF05175 Methyltransferase small domain CP48_RS16015 PF01713 Smr domain CP48_RS16020 PF11245 Protein of unknown function (DUF2544) CP48_RS16025 PF00419 Fimbrial protein CP48_RS16030 PF00419 Fimbrial protein CP48_RS16035 PF00419 Fimbrial protein CP48_RS16040 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS16040 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS16045 PF13954 PapC N-terminal domain CP48_RS16045 PF13953 PapC C-terminal domain CP48_RS16045 PF00577 Outer membrane usher protein CP48_RS16050 PF00419 Fimbrial protein CP48_RS16055 PF00300 Histidine phosphatase superfamily (branch 1) CP48_RS16060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CP48_RS16060 PF00378 Enoyl-CoA hydratase/isomerase CP48_RS16060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CP48_RS16065 PF02803 Thiolase, C-terminal domain CP48_RS16065 PF00108 Thiolase, N-terminal domain CP48_RS16070 PF04175 Protein of unknown function (DUF406) CP48_RS16075 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CP48_RS16085 PF04333 MlaA lipoprotein CP48_RS16090 PF01226 Formate/nitrite transporter CP48_RS16100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS16100 PF03466 LysR substrate binding domain CP48_RS16105 PF02447 GntP family permease CP48_RS16110 PF00291 Pyridoxal-phosphate dependent enzyme CP48_RS16115 PF07690 Major Facilitator Superfamily CP48_RS16120 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS16120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS16125 PF00072 Response regulator receiver domain CP48_RS16125 PF00196 Bacterial regulatory proteins, luxR family CP48_RS16130 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS16130 PF00072 Response regulator receiver domain CP48_RS16130 PF01627 Hpt domain CP48_RS16130 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS16130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS16135 PF02515 CoA-transferase family III CP48_RS16140 PF03547 Membrane transport protein CP48_RS16145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP48_RS16145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP48_RS16145 PF00205 Thiamine pyrophosphate enzyme, central domain CP48_RS16150 PF02515 CoA-transferase family III CP48_RS16155 PF10938 YfdX protein CP48_RS16170 PF10810 Protein of unknown function (DUF2545) CP48_RS16175 PF03279 Bacterial lipid A biosynthesis acyltransferase CP48_RS16180 PF00155 Aminotransferase class I and II CP48_RS16185 PF06580 Histidine kinase CP48_RS16185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS16185 PF07694 5TMR of 5TMR-LYT CP48_RS16190 PF04397 LytTr DNA-binding domain CP48_RS16190 PF00072 Response regulator receiver domain CP48_RS16195 PF12833 Helix-turn-helix domain CP48_RS16200 PF02896 PEP-utilising enzyme, TIM barrel domain CP48_RS16200 PF00381 PTS HPr component phosphorylation site CP48_RS16200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS16200 PF05524 PEP-utilising enzyme, N-terminal CP48_RS16200 PF00391 PEP-utilising enzyme, mobile domain CP48_RS16205 PF05343 M42 glutamyl aminopeptidase CP48_RS16210 PF00557 Metallopeptidase family M24 CP48_RS16210 PF01321 Creatinase/Prolidase N-terminal domain CP48_RS16220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS16225 PF02685 Glucokinase CP48_RS16230 PF00654 Voltage gated chloride channel CP48_RS16235 PF10697 Protein of unknown function (DUF2502) CP48_RS16245 PF01566 Natural resistance-associated macrophage protein CP48_RS16250 PF07662 Na+ dependent nucleoside transporter C-terminus CP48_RS16250 PF07670 Nucleoside recognition CP48_RS16250 PF01773 Na+ dependent nucleoside transporter N-terminus CP48_RS16255 PF01609 Transposase DDE domain CP48_RS16260 PF05231 MASE1 CP48_RS16260 PF00563 EAL domain CP48_RS16275 PF07037 Putative transcription regulator (DUF1323) CP48_RS16280 PF07037 Putative transcription regulator (DUF1323) CP48_RS16285 PF00749 tRNA synthetases class I (E and Q), catalytic domain CP48_RS16315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS16315 PF03466 LysR substrate binding domain CP48_RS16325 PF03825 Nucleoside H+ symporter CP48_RS16330 PF01048 Phosphorylase superfamily CP48_RS16335 PF03502 Nucleoside-specific channel-forming protein, Tsx CP48_RS16340 PF03466 LysR substrate binding domain CP48_RS16340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS16345 PF13593 SBF-like CPA transporter family (DUF4137) CP48_RS16350 PF12843 Putative quorum-sensing-regulated virulence factor CP48_RS16355 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CP48_RS16355 PF03120 NAD-dependent DNA ligase OB-fold domain CP48_RS16355 PF12826 Helix-hairpin-helix motif CP48_RS16355 PF01653 NAD-dependent DNA ligase adenylation domain CP48_RS16355 PF00533 BRCA1 C Terminus (BRCT) domain CP48_RS16360 PF04354 ZipA, C-terminal FtsZ-binding domain CP48_RS16370 PF00291 Pyridoxal-phosphate dependent enzyme CP48_RS16375 PF00381 PTS HPr component phosphorylation site CP48_RS16380 PF05524 PEP-utilising enzyme, N-terminal CP48_RS16380 PF00391 PEP-utilising enzyme, mobile domain CP48_RS16380 PF02896 PEP-utilising enzyme, TIM barrel domain CP48_RS16385 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CP48_RS16390 PF08543 Phosphomethylpyrimidine kinase CP48_RS16395 PF17263 Family of unknown function (DUF5329) CP48_RS16400 PF00291 Pyridoxal-phosphate dependent enzyme CP48_RS16405 PF00005 ABC transporter CP48_RS16410 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS16415 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS16430 PF01418 Helix-turn-helix domain, rpiR family CP48_RS16430 PF01380 SIS domain CP48_RS16435 PF01380 SIS domain CP48_RS16440 PF00367 phosphotransferase system, EIIB CP48_RS16440 PF02378 Phosphotransferase system, EIIC CP48_RS16445 PF00144 Beta-lactamase CP48_RS16450 PF04261 Dyp-type peroxidase family CP48_RS16455 PF06572 Protein of unknown function (DUF1131) CP48_RS16460 PF11143 Protein of unknown function (DUF2919) CP48_RS16465 PF00583 Acetyltransferase (GNAT) family CP48_RS16470 PF01520 N-acetylmuramoyl-L-alanine amidase CP48_RS16475 PF01218 Coproporphyrinogen III oxidase CP48_RS16480 PF12833 Helix-turn-helix domain CP48_RS16485 PF16365 Ethanolamine utilization protein EutK C-terminus CP48_RS16485 PF00936 BMC domain CP48_RS16490 PF00936 BMC domain CP48_RS16495 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CP48_RS16500 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CP48_RS16505 PF06277 Ethanolamine utilisation protein EutA CP48_RS16510 PF04346 Ethanolamine utilisation protein, EutH CP48_RS16515 PF00465 Iron-containing alcohol dehydrogenase CP48_RS16525 PF00171 Aldehyde dehydrogenase family CP48_RS16530 PF03319 Ethanolamine utilisation protein EutN/carboxysome CP48_RS16535 PF00936 BMC domain CP48_RS16540 PF01515 Phosphate acetyl/butaryl transferase CP48_RS16545 PF01923 Cobalamin adenosyltransferase CP48_RS16550 PF06249 Ethanolamine utilisation protein EutQ CP48_RS16555 PF10662 Ethanolamine utilisation - propanediol utilisation CP48_RS16560 PF00936 BMC domain CP48_RS16565 PF03949 Malic enzyme, NAD binding domain CP48_RS16565 PF01515 Phosphate acetyl/butaryl transferase CP48_RS16565 PF00390 Malic enzyme, N-terminal domain CP48_RS16570 PF00923 Transaldolase/Fructose-6-phosphate aldolase CP48_RS16575 PF00456 Transketolase, thiamine diphosphate binding domain CP48_RS16575 PF02779 Transketolase, pyrimidine binding domain CP48_RS16575 PF02780 Transketolase, C-terminal domain CP48_RS16580 PF06674 Protein of unknown function (DUF1176) CP48_RS16585 PF00293 NUDIX domain CP48_RS16590 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS16590 PF13247 4Fe-4S dicluster domain CP48_RS16590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CP48_RS16595 PF00672 HAMP domain CP48_RS16595 PF07730 Histidine kinase CP48_RS16595 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CP48_RS16595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS16600 PF00873 AcrB/AcrD/AcrF family CP48_RS16610 PF03960 ArsC family CP48_RS16615 PF01546 Peptidase family M20/M25/M40 CP48_RS16615 PF07687 Peptidase dimerisation domain CP48_RS16620 PF13980 Uncharacterised protein family (UPF0370) CP48_RS16625 PF02230 Phospholipase/Carboxylesterase CP48_RS16630 PF05127 Helicase CP48_RS16630 PF17176 tRNA-binding domain CP48_RS16630 PF08351 Domain of unknown function (DUF1726) CP48_RS16630 PF13718 GNAT acetyltransferase 2 CP48_RS16635 PF04228 Putative neutral zinc metallopeptidase CP48_RS16640 PF01259 SAICAR synthetase CP48_RS16650 PF06804 NlpB/DapX lipoprotein CP48_RS16655 PF00701 Dihydrodipicolinate synthetase family CP48_RS16660 PF01842 ACT domain CP48_RS16665 PF00578 AhpC/TSA family CP48_RS16670 PF00037 4Fe-4S binding domain CP48_RS16670 PF12798 4Fe-4S binding domain CP48_RS16675 PF01609 Transposase DDE domain CP48_RS16680 PF00361 Proton-conducting membrane transporter CP48_RS16685 PF00361 Proton-conducting membrane transporter CP48_RS16690 PF00146 NADH dehydrogenase CP48_RS16695 PF00361 Proton-conducting membrane transporter CP48_RS16695 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CP48_RS16700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CP48_RS16705 PF00361 Proton-conducting membrane transporter CP48_RS16705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CP48_RS16710 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CP48_RS16710 PF00361 Proton-conducting membrane transporter CP48_RS16715 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CP48_RS16715 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CP48_RS16715 PF00374 Nickel-dependent hydrogenase CP48_RS16720 PF12838 4Fe-4S dicluster domain CP48_RS16730 PF07450 Formate hydrogenlyase maturation protein HycH CP48_RS16735 PF00158 Sigma-54 interaction domain CP48_RS16735 PF01590 GAF domain CP48_RS16740 PF01226 Formate/nitrite transporter CP48_RS16745 PF01594 AI-2E family transporter CP48_RS16750 PF01435 Peptidase family M48 CP48_RS16755 PF03960 ArsC family CP48_RS16760 PF00308 Bacterial dnaA protein CP48_RS16765 PF00860 Permease family CP48_RS16775 PF02769 AIR synthase related protein, C-terminal domain CP48_RS16775 PF00586 AIR synthase related protein, N-terminal domain CP48_RS16780 PF00551 Formyl transferase CP48_RS16785 PF13090 Polyphosphate kinase C-terminal domain 2 CP48_RS16785 PF02503 Polyphosphate kinase middle domain CP48_RS16785 PF13089 Polyphosphate kinase N-terminal domain CP48_RS16785 PF17941 Polyphosphate kinase C-terminal domain 1 CP48_RS16790 PF02541 Ppx/GppA phosphatase family CP48_RS16795 PF05231 MASE1 CP48_RS16795 PF00563 EAL domain CP48_RS16805 PF11119 Protein of unknown function (DUF2633) CP48_RS16810 PF05433 Glycine zipper 2TM domain CP48_RS16815 PF17358 Family of unknown function (DUF5384) CP48_RS16820 PF00958 GMP synthase C terminal domain CP48_RS16820 PF00117 Glutamine amidotransferase class-I CP48_RS16820 PF02540 NAD synthase CP48_RS16825 PF00571 CBS domain CP48_RS16825 PF00478 IMP dehydrogenase / GMP reductase domain CP48_RS16830 PF02601 Exonuclease VII, large subunit CP48_RS16830 PF13742 OB-fold nucleic acid binding domain CP48_RS16835 PF07191 zinc-ribbons CP48_RS16840 PF01926 50S ribosome-binding GTPase CP48_RS16840 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CP48_RS16845 PF13360 PQQ-like domain CP48_RS16850 PF09976 Tetratricopeptide repeat-like domain CP48_RS16855 PF03129 Anticodon binding domain CP48_RS16855 PF13393 Histidyl-tRNA synthetase CP48_RS16860 PF04551 GcpE protein CP48_RS16865 PF13464 Domain of unknown function (DUF4115) CP48_RS16870 PF04055 Radical SAM superfamily CP48_RS16875 PF00334 Nucleoside diphosphate kinase CP48_RS16880 PF06832 Penicillin-Binding Protein C-terminus Family CP48_RS16880 PF00912 Transglycosylase CP48_RS16880 PF00905 Penicillin binding protein transpeptidase domain CP48_RS16885 PF01835 MG2 domain CP48_RS16885 PF17962 Bacterial macroglobulin domain 6 CP48_RS16885 PF07678 A-macroglobulin TED domain CP48_RS16885 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CP48_RS16885 PF00207 Alpha-2-macroglobulin family CP48_RS16885 PF07703 Alpha-2-macroglobulin bait region domain CP48_RS16885 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CP48_RS16885 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CP48_RS16885 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CP48_RS16895 PF07179 SseB protein N-terminal domain CP48_RS16895 PF14581 SseB protein C-terminal domain CP48_RS16900 PF12404 Peptidase CP48_RS16900 PF00883 Cytosol aminopeptidase family, catalytic domain CP48_RS16905 PF04384 Iron-sulphur cluster assembly CP48_RS16910 PF00111 2Fe-2S iron-sulfur cluster binding domain CP48_RS16915 PF00012 Hsp70 protein CP48_RS16920 PF07743 HSCB C-terminal oligomerisation domain CP48_RS16925 PF01521 Iron-sulphur cluster biosynthesis CP48_RS16930 PF01592 NifU-like N terminal domain CP48_RS16935 PF00266 Aminotransferase class-V CP48_RS16940 PF02082 Transcriptional regulator CP48_RS16945 PF00588 SpoU rRNA Methylase family CP48_RS16950 PF00459 Inositol monophosphatase family CP48_RS16955 PF12146 Serine aminopeptidase, S33 CP48_RS16960 PF00874 PRD domain CP48_RS16965 PF12832 MFS_1 like family CP48_RS16970 PF03466 LysR substrate binding domain CP48_RS16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS16975 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CP48_RS16975 PF00355 Rieske [2Fe-2S] domain CP48_RS16980 PF00866 Ring hydroxylating beta subunit CP48_RS16985 PF00355 Rieske [2Fe-2S] domain CP48_RS16990 PF00106 short chain dehydrogenase CP48_RS16995 PF14759 Reductase C-terminal CP48_RS16995 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS17000 PF07681 DoxX CP48_RS17005 PF01263 Aldose 1-epimerase CP48_RS17010 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS17010 PF00107 Zinc-binding dehydrogenase CP48_RS17015 PF02653 Branched-chain amino acid transport system / permease component CP48_RS17020 PF00005 ABC transporter CP48_RS17025 PF13407 Periplasmic binding protein domain CP48_RS17030 PF13181 Tetratricopeptide repeat CP48_RS17030 PF17128 Domain of unknown function (DUF5107) CP48_RS17035 PF00480 ROK family CP48_RS17040 PF00464 Serine hydroxymethyltransferase CP48_RS17045 PF00175 Oxidoreductase NAD-binding domain CP48_RS17045 PF00970 Oxidoreductase FAD-binding domain CP48_RS17045 PF00042 Globin CP48_RS17050 PF00543 Nitrogen regulatory protein P-II CP48_RS17055 PF00072 Response regulator receiver domain CP48_RS17055 PF00158 Sigma-54 interaction domain CP48_RS17060 PF13942 YfhG lipoprotein CP48_RS17065 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS17065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS17070 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CP48_RS17070 PF02769 AIR synthase related protein, C-terminal domain CP48_RS17070 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CP48_RS17075 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS17075 PF01464 Transglycosylase SLT domain CP48_RS17080 PF14437 MafB19-like deaminase CP48_RS17090 PF01380 SIS domain CP48_RS17090 PF01418 Helix-turn-helix domain, rpiR family CP48_RS17095 PF12838 4Fe-4S dicluster domain CP48_RS17115 PF01648 4'-phosphopantetheinyl transferase superfamily CP48_RS17120 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CP48_RS17125 PF02565 Recombination protein O C terminal CP48_RS17125 PF11967 Recombination protein O N terminal CP48_RS17130 PF01926 50S ribosome-binding GTPase CP48_RS17130 PF07650 KH domain CP48_RS17135 PF14622 Ribonuclease-III-like CP48_RS17135 PF00035 Double-stranded RNA binding motif CP48_RS17140 PF10502 Signal peptidase, peptidase S26 CP48_RS17145 PF00009 Elongation factor Tu GTP binding domain CP48_RS17145 PF00679 Elongation factor G C-terminus CP48_RS17145 PF03144 Elongation factor Tu domain 2 CP48_RS17145 PF06421 GTP-binding protein LepA C-terminus CP48_RS17155 PF03888 MucB/RseB N-terminal domain CP48_RS17155 PF17188 MucB/RseB C-terminal domain CP48_RS17160 PF03872 Anti sigma-E protein RseA, N-terminal domain CP48_RS17160 PF03873 Anti sigma-E protein RseA, C-terminal domain CP48_RS17165 PF08281 Sigma-70, region 4 CP48_RS17165 PF04542 Sigma-70 region 2 CP48_RS17175 PF02910 Fumarate reductase flavoprotein C-term CP48_RS17175 PF00890 FAD binding domain CP48_RS17180 PF05175 Methyltransferase small domain CP48_RS17185 PF00271 Helicase conserved C-terminal domain CP48_RS17185 PF00270 DEAD/DEAH box helicase CP48_RS17195 PF03466 LysR substrate binding domain CP48_RS17195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS17200 PF01810 LysE type translocator CP48_RS17205 PF01228 Glycine radical CP48_RS17210 PF03167 Uracil DNA glycosylase superfamily CP48_RS17215 PF08032 RNA 2'-O ribose methyltransferase substrate binding CP48_RS17215 PF00588 SpoU rRNA Methylase family CP48_RS17225 PF00085 Thioredoxin CP48_RS17230 PF03942 DTW domain CP48_RS17235 PF13380 CoA binding domain CP48_RS17235 PF13607 Succinyl-CoA ligase like flavodoxin domain CP48_RS17235 PF00583 Acetyltransferase (GNAT) family CP48_RS17240 PF13091 PLD-like domain CP48_RS17245 PF10043 Predicted periplasmic lipoprotein (DUF2279) CP48_RS17250 PF00083 Sugar (and other) transporter CP48_RS17280 PF07724 AAA domain (Cdc48 subfamily) CP48_RS17280 PF17871 AAA lid domain CP48_RS17280 PF02861 Clp amino terminal domain, pathogenicity island component CP48_RS17280 PF00004 ATPase family associated with various cellular activities (AAA) CP48_RS17280 PF10431 C-terminal, D2-small domain, of ClpB protein CP48_RS17285 PF02578 Multi-copper polyphenol oxidoreductase laccase CP48_RS17290 PF00849 RNA pseudouridylate synthase CP48_RS17290 PF01479 S4 domain CP48_RS17295 PF13525 Outer membrane lipoprotein CP48_RS17305 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CP48_RS17310 PF00800 Prephenate dehydratase CP48_RS17310 PF01817 Chorismate mutase type II CP48_RS17315 PF01817 Chorismate mutase type II CP48_RS17315 PF02153 Prephenate dehydrogenase CP48_RS17320 PF00793 DAHP synthetase I family CP48_RS17325 PF10973 Protein of unknown function (DUF2799) CP48_RS17330 PF13689 YfiR/HmsC-like CP48_RS17335 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS17335 PF17152 Periplasmic sensor domain CP48_RS17340 PF00691 OmpA family CP48_RS17345 PF01245 Ribosomal protein L19 CP48_RS17350 PF01746 tRNA (Guanine-1)-methyltransferase CP48_RS17355 PF01782 RimM N-terminal domain CP48_RS17355 PF05239 PRC-barrel domain CP48_RS17360 PF00886 Ribosomal protein S16 CP48_RS17365 PF02978 Signal peptide binding domain CP48_RS17365 PF02881 SRP54-type protein, helical bundle domain CP48_RS17365 PF00448 SRP54-type protein, GTPase domain CP48_RS17370 PF01578 Cytochrome C assembly protein CP48_RS17375 PF01595 Cyclin M transmembrane N-terminal domain CP48_RS17375 PF03471 Transporter associated domain CP48_RS17375 PF00571 CBS domain CP48_RS17380 PF01025 GrpE CP48_RS17385 PF01513 ATP-NAD kinase CP48_RS17390 PF02463 RecF/RecN/SMC N terminal domain CP48_RS17395 PF04355 SmpA / OmlA family CP48_RS17400 PF03658 RnfH family Ubiquitin CP48_RS17405 PF03364 Polyketide cyclase / dehydrase and lipid transport CP48_RS17410 PF01668 SmpB protein CP48_RS17420 PF03797 Autotransporter beta-domain CP48_RS17420 PF16168 Adhesin of bacterial autotransporter system, probable stalk CP48_RS17420 PF03212 Pertactin CP48_RS17425 PF17621 Family of unknown function (DUF5508) CP48_RS17430 PF17612 Family of unknown function (DUF5507) CP48_RS17445 PF00128 Alpha amylase, catalytic domain CP48_RS17450 PF08943 CsiD CP48_RS17455 PF01266 FAD dependent oxidoreductase CP48_RS17460 PF00171 Aldehyde dehydrogenase family CP48_RS17465 PF00202 Aminotransferase class-III CP48_RS17470 PF00324 Amino acid permease CP48_RS17475 PF00392 Bacterial regulatory proteins, gntR family CP48_RS17475 PF07729 FCD domain CP48_RS17480 PF04972 BON domain CP48_RS17480 PF01476 LysM domain CP48_RS17485 PF01679 Proteolipid membrane potential modulator CP48_RS17490 PF01022 Bacterial regulatory protein, arsR family CP48_RS17495 PF00581 Rhodanese-like domain CP48_RS17495 PF11127 Protein of unknown function (DUF2892) CP48_RS17500 PF00816 H-NS histone family CP48_RS17505 PF06610 L-alanine exporter CP48_RS17510 PF09400 Protein of unknown function (DUF2002) CP48_RS17515 PF05957 Bacterial protein of unknown function (DUF883) CP48_RS17520 PF00462 Glutaredoxin CP48_RS17525 PF07972 NrdI Flavodoxin like CP48_RS17530 PF00317 Ribonucleotide reductase, all-alpha domain CP48_RS17530 PF08343 Ribonucleotide reductase N-terminal CP48_RS17530 PF02867 Ribonucleotide reductase, barrel domain CP48_RS17535 PF00268 Ribonucleotide reductase, small chain CP48_RS17540 PF00005 ABC transporter CP48_RS17540 PF00571 CBS domain CP48_RS17545 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS17550 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CP48_RS17555 PF07690 Major Facilitator Superfamily CP48_RS17560 PF03591 AzlC protein CP48_RS17565 PF05437 Branched-chain amino acid transport protein (AzlD) CP48_RS17570 PF01047 MarR family CP48_RS17575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS17575 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS17580 PF07690 Major Facilitator Superfamily CP48_RS17585 PF02664 S-Ribosylhomocysteinase (LuxS) CP48_RS17590 PF04262 Glutamate-cysteine ligase CP48_RS17595 PF09335 SNARE associated Golgi protein CP48_RS17600 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS17630 PF02599 Global regulator protein family CP48_RS17635 PF01411 tRNA synthetases class II (A) CP48_RS17635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CP48_RS17635 PF02272 DHHA1 domain CP48_RS17645 PF02631 RecX family CP48_RS17650 PF00154 recA bacterial DNA recombination protein CP48_RS17655 PF02464 Competence-damaged protein CP48_RS17660 PF13406 Transglycosylase SLT domain CP48_RS17665 PF03608 PTS system enzyme II sorbitol-specific factor CP48_RS17670 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CP48_RS17670 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CP48_RS17675 PF03829 PTS system glucitol/sorbitol-specific IIA component CP48_RS17680 PF00106 short chain dehydrogenase CP48_RS17685 PF06923 Glucitol operon activator protein (GutM) CP48_RS17690 PF08220 DeoR-like helix-turn-helix domain CP48_RS17690 PF00455 DeoR C terminal sensor domain CP48_RS17695 PF00571 CBS domain CP48_RS17695 PF01380 SIS domain CP48_RS17700 PF00158 Sigma-54 interaction domain CP48_RS17700 PF01590 GAF domain CP48_RS17705 PF00301 Rubredoxin CP48_RS17705 PF00258 Flavodoxin CP48_RS17705 PF00753 Metallo-beta-lactamase superfamily CP48_RS17710 PF18113 Rubredoxin binding C-terminal domain CP48_RS17710 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS17715 PF01300 Telomere recombination CP48_RS17715 PF17788 HypF Kae1-like domain CP48_RS17715 PF00708 Acylphosphatase CP48_RS17715 PF07503 HypF finger CP48_RS17720 PF13247 4Fe-4S dicluster domain CP48_RS17720 PF12800 4Fe-4S binding domain CP48_RS17725 PF00356 Bacterial regulatory proteins, lacI family CP48_RS17730 PF02378 Phosphotransferase system, EIIC CP48_RS17730 PF00367 phosphotransferase system, EIIB CP48_RS17735 PF00232 Glycosyl hydrolase family 1 CP48_RS17740 PF01381 Helix-turn-helix CP48_RS17745 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CP48_RS17755 PF01750 Hydrogenase maturation protease CP48_RS17760 PF07450 Formate hydrogenlyase maturation protein HycH CP48_RS17765 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CP48_RS17770 PF12838 4Fe-4S dicluster domain CP48_RS17775 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CP48_RS17775 PF00374 Nickel-dependent hydrogenase CP48_RS17775 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CP48_RS17780 PF00146 NADH dehydrogenase CP48_RS17785 PF00361 Proton-conducting membrane transporter CP48_RS17790 PF13247 4Fe-4S dicluster domain CP48_RS17800 PF11046 Transcriptional repressor of hyc and hyp operons CP48_RS17805 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CP48_RS17810 PF02492 CobW/HypB/UreG, nucleotide-binding domain CP48_RS17815 PF01455 HupF/HypC family CP48_RS17820 PF01924 Hydrogenase formation hypA family CP48_RS17825 PF02769 AIR synthase related protein, C-terminal domain CP48_RS17825 PF00586 AIR synthase related protein, N-terminal domain CP48_RS17830 PF01590 GAF domain CP48_RS17830 PF00158 Sigma-54 interaction domain CP48_RS17835 PF11756 Nitrous oxide-stimulated promoter CP48_RS17840 PF05192 MutS domain III CP48_RS17840 PF05190 MutS family domain IV CP48_RS17840 PF00488 MutS domain V CP48_RS17840 PF05188 MutS domain II CP48_RS17840 PF01624 MutS domain I CP48_RS17845 PF00149 Calcineurin-like phosphoesterase CP48_RS17850 PF00455 DeoR C terminal sensor domain CP48_RS17850 PF08220 DeoR-like helix-turn-helix domain CP48_RS17855 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CP48_RS17855 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CP48_RS17860 PF17042 Nucleotide-binding C-terminal domain CP48_RS17860 PF07005 Sugar-binding N-terminal domain CP48_RS17865 PF00596 Class II Aldolase and Adducin N-terminal domain CP48_RS17870 PF01261 Xylose isomerase-like TIM barrel CP48_RS17875 PF02447 GntP family permease CP48_RS17880 PF04545 Sigma-70, region 4 CP48_RS17880 PF04539 Sigma-70 region 3 CP48_RS17880 PF04542 Sigma-70 region 2 CP48_RS17880 PF00140 Sigma-70 factor, region 1.2 CP48_RS17885 PF01476 LysM domain CP48_RS17885 PF01551 Peptidase family M23 CP48_RS17895 PF01975 Survival protein SurE CP48_RS17900 PF01142 tRNA pseudouridine synthase D (TruD) CP48_RS17905 PF02542 YgbB family CP48_RS17910 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CP48_RS17915 PF04977 Septum formation initiator CP48_RS17920 PF12084 Protein of unknown function (DUF3561) CP48_RS17930 PF00009 Elongation factor Tu GTP binding domain CP48_RS17935 PF01507 Phosphoadenosine phosphosulfate reductase family CP48_RS17940 PF04389 Peptidase family M28 CP48_RS17945 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) CP48_RS17950 PF01867 CRISPR associated protein Cas1 CP48_RS17960 PF09704 CRISPR-associated protein (Cas_Cas5) CP48_RS17965 PF09344 CT1975-like protein CP48_RS17975 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) CP48_RS17985 PF01609 Transposase DDE domain CP48_RS17990 PF01609 Transposase DDE domain CP48_RS17995 PF01848 Hok/gef family CP48_RS18000 PF01507 Phosphoadenosine phosphosulfate reductase family CP48_RS18005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CP48_RS18005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CP48_RS18010 PF00175 Oxidoreductase NAD-binding domain CP48_RS18010 PF00667 FAD binding domain CP48_RS18010 PF00258 Flavodoxin CP48_RS18015 PF01242 6-pyruvoyl tetrahydropterin synthase CP48_RS18020 PF01266 FAD dependent oxidoreductase CP48_RS18030 PF04309 Glycerol-3-phosphate responsive antiterminator CP48_RS18035 PF01012 Electron transfer flavoprotein domain CP48_RS18035 PF00766 Electron transfer flavoprotein FAD-binding domain CP48_RS18040 PF01012 Electron transfer flavoprotein domain CP48_RS18045 PF00083 Sugar (and other) transporter CP48_RS18050 PF02913 FAD linked oxidases, C-terminal domain CP48_RS18050 PF01565 FAD binding domain CP48_RS18060 PF07690 Major Facilitator Superfamily CP48_RS18065 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CP48_RS18065 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CP48_RS18070 PF04055 Radical SAM superfamily CP48_RS18080 PF04536 TPM domain CP48_RS18085 PF03952 Enolase, N-terminal domain CP48_RS18085 PF00113 Enolase, C-terminal TIM barrel domain CP48_RS18090 PF00117 Glutamine amidotransferase class-I CP48_RS18090 PF06418 CTP synthase N-terminus CP48_RS18095 PF03819 MazG nucleotide pyrophosphohydrolase domain CP48_RS18100 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CP48_RS18105 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CP48_RS18110 PF13291 ACT domain CP48_RS18110 PF04607 Region found in RelA / SpoT proteins CP48_RS18110 PF02824 TGS domain CP48_RS18115 PF05958 tRNA (Uracil-5-)-methyltransferase CP48_RS18115 PF01938 TRAM domain CP48_RS18120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CP48_RS18120 PF00072 Response regulator receiver domain CP48_RS18120 PF01627 Hpt domain CP48_RS18120 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS18120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS18120 PF00672 HAMP domain CP48_RS18125 PF13378 Enolase C-terminal domain-like CP48_RS18130 PF13378 Enolase C-terminal domain-like CP48_RS18130 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CP48_RS18135 PF07690 Major Facilitator Superfamily CP48_RS18140 PF00258 Flavodoxin CP48_RS18145 PF00849 RNA pseudouridylate synthase CP48_RS18150 PF04287 tRNA pseudouridine synthase C CP48_RS18160 PF07348 Syd protein (SUKH-2) CP48_RS18165 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CP48_RS18165 PF14489 QueF-like protein CP48_RS18170 PF11892 Domain of unknown function (DUF3412) CP48_RS18170 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CP48_RS18170 PF03641 Possible lysine decarboxylase CP48_RS18180 PF03313 Serine dehydratase alpha chain CP48_RS18180 PF03315 Serine dehydratase beta chain CP48_RS18185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CP48_RS18185 PF01367 5'-3' exonuclease, C-terminal SAM fold CP48_RS18190 PF00465 Iron-containing alcohol dehydrogenase CP48_RS18195 PF00596 Class II Aldolase and Adducin N-terminal domain CP48_RS18200 PF07690 Major Facilitator Superfamily CP48_RS18205 PF07882 L-fucose isomerase, second N-terminal domain CP48_RS18205 PF07881 L-fucose isomerase, first N-terminal domain CP48_RS18205 PF02952 L-fucose isomerase, C-terminal domain CP48_RS18210 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CP48_RS18210 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CP48_RS18215 PF05025 RbsD / FucU transport protein family CP48_RS18220 PF00455 DeoR C terminal sensor domain CP48_RS18220 PF08220 DeoR-like helix-turn-helix domain CP48_RS18225 PF18125 RlmM ferredoxin-like domain CP48_RS18225 PF01728 FtsJ-like methyltransferase CP48_RS18230 PF04241 Protein of unknown function (DUF423) CP48_RS18235 PF03466 LysR substrate binding domain CP48_RS18235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS18240 PF06004 Bacterial protein of unknown function (DUF903) CP48_RS18245 PF00266 Aminotransferase class-V CP48_RS18250 PF02657 Fe-S metabolism associated domain CP48_RS18255 PF00899 ThiF family CP48_RS18260 PF06725 3D domain CP48_RS18260 PF03562 MltA specific insert domain CP48_RS18280 PF11741 AMIN domain CP48_RS18280 PF01520 N-acetylmuramoyl-L-alanine amidase CP48_RS18285 PF00696 Amino acid kinase family CP48_RS18285 PF00583 Acetyltransferase (GNAT) family CP48_RS18290 PF13538 UvrD-like helicase C-terminal domain CP48_RS18295 PF13361 UvrD-like helicase C-terminal domain CP48_RS18295 PF12705 PD-(D/E)XK nuclease superfamily CP48_RS18295 PF00580 UvrD/REP helicase N-terminal domain CP48_RS18300 PF00675 Insulinase (Peptidase family M16) CP48_RS18300 PF16187 Middle or third domain of peptidase_M16 CP48_RS18300 PF05193 Peptidase M16 inactive domain CP48_RS18305 PF17946 RecC C-terminal domain CP48_RS18310 PF12528 Type II secretion prepilin peptidase dependent protein C CP48_RS18310 PF07963 Prokaryotic N-terminal methylation motif CP48_RS18315 PF10713 Protein of unknown function (DUF2509) CP48_RS18320 PF07963 Prokaryotic N-terminal methylation motif CP48_RS18325 PF07963 Prokaryotic N-terminal methylation motif CP48_RS18330 PF00303 Thymidylate synthase CP48_RS18335 PF01790 Prolipoprotein diacylglyceryl transferase CP48_RS18340 PF05524 PEP-utilising enzyme, N-terminal CP48_RS18340 PF02896 PEP-utilising enzyme, TIM barrel domain CP48_RS18340 PF01590 GAF domain CP48_RS18340 PF00391 PEP-utilising enzyme, mobile domain CP48_RS18345 PF00293 NUDIX domain CP48_RS18360 PF02976 DNA mismatch repair enzyme MutH CP48_RS18365 PF03741 Integral membrane protein TerC family CP48_RS18370 PF06004 Bacterial protein of unknown function (DUF903) CP48_RS18375 PF00248 Aldo/keto reductase family CP48_RS18380 PF07690 Major Facilitator Superfamily CP48_RS18385 PF00501 AMP-binding enzyme CP48_RS18385 PF01553 Acyltransferase CP48_RS18390 PF00356 Bacterial regulatory proteins, lacI family CP48_RS18395 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CP48_RS18395 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CP48_RS18400 PF03466 LysR substrate binding domain CP48_RS18400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS18405 PF01177 Asp/Glu/Hydantoin racemase CP48_RS18410 PF00083 Sugar (and other) transporter CP48_RS18420 PF04962 KduI/IolB family CP48_RS18425 PF02803 Thiolase, C-terminal domain CP48_RS18425 PF00108 Thiolase, N-terminal domain CP48_RS18430 PF03222 Tryptophan/tyrosine permease family CP48_RS18435 PF00665 Integrase core domain CP48_RS18435 PF13276 HTH-like domain CP48_RS18440 PF01527 Transposase CP48_RS18445 PF00196 Bacterial regulatory proteins, luxR family CP48_RS18450 PF00486 Transcriptional regulatory protein, C terminal CP48_RS18470 PF07720 Tetratricopeptide repeat CP48_RS18475 PF00486 Transcriptional regulatory protein, C terminal CP48_RS18485 PF01464 Transglycosylase SLT domain CP48_RS18490 PF00196 Bacterial regulatory proteins, luxR family CP48_RS18490 PF00072 Response regulator receiver domain CP48_RS18495 PF00196 Bacterial regulatory proteins, luxR family CP48_RS18495 PF00072 Response regulator receiver domain CP48_RS18510 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) CP48_RS18515 PF01514 Secretory protein of YscJ/FliF family CP48_RS18530 PF09480 Type III secretion system protein PrgH-EprH (PrgH) CP48_RS18545 PF01312 FlhB HrpN YscU SpaS Family CP48_RS18550 PF01312 FlhB HrpN YscU SpaS Family CP48_RS18560 PF01311 Bacterial export proteins, family 1 CP48_RS18565 PF01313 Bacterial export proteins, family 3 CP48_RS18570 PF00813 FliP family CP48_RS18575 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CP48_RS18600 PF00771 FHIPEP family CP48_RS18660 PF06069 PerC transcriptional activator CP48_RS18665 PF04352 ProQ/FINO family CP48_RS18665 PF17516 ProQ C-terminal domain CP48_RS18715 PF00589 Phage integrase family CP48_RS18715 PF14659 Phage integrase, N-terminal SAM-like domain CP48_RS18715 PF13356 Arm DNA-binding domain CP48_RS18815 PF01476 LysM domain CP48_RS18815 PF01551 Peptidase family M23 CP48_RS18820 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CP48_RS18820 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CP48_RS18825 PF03450 CO dehydrogenase flavoprotein C-terminal domain CP48_RS18825 PF00941 FAD binding domain in molybdopterin dehydrogenase CP48_RS18830 PF00111 2Fe-2S iron-sulfur cluster binding domain CP48_RS18830 PF01799 [2Fe-2S] binding domain CP48_RS18835 PF13188 PAS domain CP48_RS18835 PF00158 Sigma-54 interaction domain CP48_RS18835 PF02954 Bacterial regulatory protein, Fis family CP48_RS18840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CP48_RS18840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CP48_RS18845 PF00291 Pyridoxal-phosphate dependent enzyme CP48_RS18850 PF01546 Peptidase family M20/M25/M40 CP48_RS18850 PF07687 Peptidase dimerisation domain CP48_RS18855 PF01979 Amidohydrolase family CP48_RS18860 PF00696 Amino acid kinase family CP48_RS18865 PF02625 XdhC and CoxI family CP48_RS18865 PF13478 XdhC Rossmann domain CP48_RS18875 PF12804 MobA-like NTP transferase domain CP48_RS18880 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS18880 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CP48_RS18885 PF01979 Amidohydrolase family CP48_RS18890 PF00941 FAD binding domain in molybdopterin dehydrogenase CP48_RS18895 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CP48_RS18895 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CP48_RS18895 PF01799 [2Fe-2S] binding domain CP48_RS18900 PF00860 Permease family CP48_RS18905 PF01979 Amidohydrolase family CP48_RS18910 PF00860 Permease family CP48_RS18915 PF13247 4Fe-4S dicluster domain CP48_RS18920 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CP48_RS18920 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS18920 PF13247 4Fe-4S dicluster domain CP48_RS18930 PF00860 Permease family CP48_RS18940 PF00293 NUDIX domain CP48_RS18945 PF01336 OB-fold nucleic acid binding domain CP48_RS18945 PF00152 tRNA synthetases class II (D, K and N) CP48_RS18950 PF03462 PCRF domain CP48_RS18950 PF00472 RF-1 domain CP48_RS18955 PF17768 RecJ OB domain CP48_RS18955 PF02272 DHHA1 domain CP48_RS18955 PF01368 DHH family CP48_RS18960 PF13098 Thioredoxin-like domain CP48_RS18960 PF10411 Disulfide bond isomerase protein N-terminus CP48_RS18965 PF00589 Phage integrase family CP48_RS18965 PF02899 Phage integrase, N-terminal SAM-like domain CP48_RS18970 PF00258 Flavodoxin CP48_RS18975 PF07254 Membrane-bound toxin component of toxin-antitoxin system CP48_RS18980 PF03937 Flavinator of succinate dehydrogenase CP48_RS18985 PF01571 Aminomethyltransferase folate-binding domain CP48_RS18990 PF03006 Haemolysin-III related CP48_RS18995 PF04266 ASCH domain CP48_RS19000 PF00232 Glycosyl hydrolase family 1 CP48_RS19010 PF02347 Glycine cleavage system P-protein CP48_RS19015 PF01597 Glycine cleavage H-protein CP48_RS19020 PF01571 Aminomethyltransferase folate-binding domain CP48_RS19020 PF08669 Glycine cleavage T-protein C-terminal barrel domain CP48_RS19025 PF01494 FAD binding domain CP48_RS19030 PF01494 FAD binding domain CP48_RS19035 PF00557 Metallopeptidase family M24 CP48_RS19035 PF05195 Aminopeptidase P, N-terminal domain CP48_RS19040 PF03695 Uncharacterised protein family (UPF0149) CP48_RS19045 PF05164 Cell division protein ZapA CP48_RS19055 PF01812 5-formyltetrahydrofolate cyclo-ligase family CP48_RS19065 PF01842 ACT domain CP48_RS19065 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CP48_RS19065 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CP48_RS19070 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CP48_RS19075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS19075 PF03466 LysR substrate binding domain CP48_RS19080 PF01642 Methylmalonyl-CoA mutase CP48_RS19080 PF02310 B12 binding domain CP48_RS19090 PF00378 Enoyl-CoA hydratase/isomerase CP48_RS19095 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CP48_RS19095 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CP48_RS19100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS19100 PF03466 LysR substrate binding domain CP48_RS19105 PF04402 Protein of unknown function (DUF541) CP48_RS19110 PF01810 LysE type translocator CP48_RS19115 PF05552 Conserved TM helix CP48_RS19115 PF00924 Mechanosensitive ion channel CP48_RS19120 PF01116 Fructose-bisphosphate aldolase class-II CP48_RS19125 PF00162 Phosphoglycerate kinase CP48_RS19130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CP48_RS19130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CP48_RS19140 PF05068 Mannitol repressor CP48_RS19145 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CP48_RS19150 PF00107 Zinc-binding dehydrogenase CP48_RS19150 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS19155 PF02378 Phosphotransferase system, EIIC CP48_RS19155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS19160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS19165 PF00456 Transketolase, thiamine diphosphate binding domain CP48_RS19165 PF02779 Transketolase, pyrimidine binding domain CP48_RS19165 PF02780 Transketolase, C-terminal domain CP48_RS19170 PF01435 Peptidase family M48 CP48_RS19175 PF00491 Arginase family CP48_RS19185 PF17944 Arginine decarboxylase C-terminal helical extension CP48_RS19185 PF17810 Arginine decarboxylase helical bundle domain CP48_RS19185 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CP48_RS19190 PF11036 Virulence promoting factor CP48_RS19195 PF17430 Uncharacterized YqgC-like CP48_RS19205 PF02772 S-adenosylmethionine synthetase, central domain CP48_RS19205 PF00438 S-adenosylmethionine synthetase, N-terminal domain CP48_RS19205 PF02773 S-adenosylmethionine synthetase, C-terminal domain CP48_RS19210 PF00083 Sugar (and other) transporter CP48_RS19215 PF17283 SprT-like zinc ribbon domain CP48_RS19215 PF10263 SprT-like family CP48_RS19220 PF04231 Endonuclease I CP48_RS19225 PF04452 RNA methyltransferase CP48_RS19230 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CP48_RS19230 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CP48_RS19235 PF02622 Uncharacterized ACR, COG1678 CP48_RS19240 PF03652 Holliday junction resolvase CP48_RS19245 PF00437 Type II/IV secretion system protein CP48_RS19250 PF01168 Alanine racemase, N-terminal domain CP48_RS19255 PF02325 YGGT family CP48_RS19260 PF02594 Uncharacterised ACR, YggU family COG1872 CP48_RS19265 PF01725 Ham1 family CP48_RS19270 PF06969 HemN C-terminal domain CP48_RS19270 PF04055 Radical SAM superfamily CP48_RS19275 PF06717 Protein of unknown function (DUF1202) CP48_RS19280 PF00710 Asparaginase, N-terminal CP48_RS19280 PF17763 Glutaminase/Asparaginase C-terminal domain CP48_RS19285 PF11101 Protein of unknown function (DUF2884) CP48_RS19295 PF04320 Protein with unknown function (DUF469) CP48_RS19300 PF02390 Putative methyltransferase CP48_RS19305 PF14815 NUDIX domain CP48_RS19305 PF00730 HhH-GPD superfamily base excision DNA repair protein CP48_RS19305 PF00633 Helix-hairpin-helix motif CP48_RS19305 PF10576 Iron-sulfur binding domain of endonuclease III CP48_RS19310 PF04362 Bacterial Fe(2+) trafficking CP48_RS19315 PF01464 Transglycosylase SLT domain CP48_RS19315 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CP48_RS19320 PF03825 Nucleoside H+ symporter CP48_RS19325 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CP48_RS19325 PF01276 Orn/Lys/Arg decarboxylase, major domain CP48_RS19325 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CP48_RS19330 PF04474 Protein of unknown function (DUF554) CP48_RS19340 PF14659 Phage integrase, N-terminal SAM-like domain CP48_RS19340 PF13356 Arm DNA-binding domain CP48_RS19340 PF00589 Phage integrase family CP48_RS19345 PF00589 Phage integrase family CP48_RS19345 PF13356 Arm DNA-binding domain CP48_RS19355 PF05717 IS66 Orf2 like protein CP48_RS19360 PF13817 IS66 C-terminal element CP48_RS19360 PF03050 Transposase IS66 family CP48_RS19360 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS19360 PF13007 Transposase C of IS166 homeodomain CP48_RS19370 PF05491 RuvB C-terminal winged helix domain CP48_RS19370 PF17864 RuvB AAA lid domain CP48_RS19370 PF05496 Holliday junction DNA helicase RuvB P-loop domain CP48_RS19380 PF01555 DNA methylase CP48_RS19395 PF05717 IS66 Orf2 like protein CP48_RS19400 PF02371 Transposase IS116/IS110/IS902 family CP48_RS19400 PF01548 Transposase CP48_RS19405 PF00589 Phage integrase family CP48_RS19405 PF13356 Arm DNA-binding domain CP48_RS19410 PF00884 Sulfatase CP48_RS19415 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS19415 PF13007 Transposase C of IS166 homeodomain CP48_RS19415 PF13817 IS66 C-terminal element CP48_RS19415 PF03050 Transposase IS66 family CP48_RS19420 PF05717 IS66 Orf2 like protein CP48_RS19425 PF13276 HTH-like domain CP48_RS19425 PF00665 Integrase core domain CP48_RS19425 PF01527 Transposase CP48_RS19440 PF06316 Enterobacterial Ail/Lom protein CP48_RS19455 PF05860 haemagglutination activity domain CP48_RS19455 PF04829 Pre-toxin domain with VENN motif CP48_RS19455 PF13332 Hemagglutinin repeat CP48_RS19455 PF13018 Extended Signal Peptide of Type V secretion system CP48_RS19465 PF05860 haemagglutination activity domain CP48_RS19465 PF04829 Pre-toxin domain with VENN motif CP48_RS19465 PF13018 Extended Signal Peptide of Type V secretion system CP48_RS19465 PF13332 Hemagglutinin repeat CP48_RS19470 PF13332 Hemagglutinin repeat CP48_RS19470 PF13018 Extended Signal Peptide of Type V secretion system CP48_RS19470 PF05860 haemagglutination activity domain CP48_RS19470 PF04829 Pre-toxin domain with VENN motif CP48_RS19485 PF13817 IS66 C-terminal element CP48_RS19485 PF13007 Transposase C of IS166 homeodomain CP48_RS19485 PF03050 Transposase IS66 family CP48_RS19485 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS19495 PF02794 RTX toxin acyltransferase family CP48_RS19500 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CP48_RS19500 PF17287 POTRA domain CP48_RS19500 PF08479 POTRA domain, ShlB-type CP48_RS19550 PF05321 Haemolysin expression modulating protein CP48_RS19580 PF03797 Autotransporter beta-domain CP48_RS19580 PF13018 Extended Signal Peptide of Type V secretion system CP48_RS19580 PF16168 Adhesin of bacterial autotransporter system, probable stalk CP48_RS19585 PF06067 Domain of unknown function (DUF932) CP48_RS19590 PF03230 Antirestriction protein CP48_RS19595 PF04002 RadC-like JAB domain CP48_RS19600 PF06174 Protein of unknown function (DUF987) CP48_RS19605 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CP48_RS19610 PF06755 CbtA_toxin of type IV toxin-antitoxin system CP48_RS19630 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CP48_RS19640 PF13356 Arm DNA-binding domain CP48_RS19640 PF00589 Phage integrase family CP48_RS19645 PF00884 Sulfatase CP48_RS19650 PF13505 Outer membrane protein beta-barrel domain CP48_RS19660 PF02371 Transposase IS116/IS110/IS902 family CP48_RS19660 PF01548 Transposase CP48_RS19670 PF04612 Type II secretion system (T2SS), protein M CP48_RS19675 PF12693 GspL periplasmic domain CP48_RS19680 PF03934 Type II secretion system (T2SS), protein K CP48_RS19685 PF11612 Type II secretion system (T2SS), protein J CP48_RS19685 PF07963 Prokaryotic N-terminal methylation motif CP48_RS19690 PF02501 Type II secretion system (T2SS), protein I CP48_RS19690 PF07963 Prokaryotic N-terminal methylation motif CP48_RS19695 PF12019 Type II transport protein GspH CP48_RS19700 PF07963 Prokaryotic N-terminal methylation motif CP48_RS19700 PF08334 Type II secretion system (T2SS), protein G CP48_RS19705 PF00482 Type II secretion system (T2SS), protein F CP48_RS19710 PF00437 Type II/IV secretion system protein CP48_RS19715 PF03958 Bacterial type II/III secretion system short domain CP48_RS19715 PF00263 Bacterial type II and III secretion system protein CP48_RS19720 PF11356 Type II secretion system protein C CP48_RS19725 PF16549 Type II secretion system (T2SS) pilotin, S protein CP48_RS19730 PF01478 Type IV leader peptidase family CP48_RS19730 PF06750 Bacterial Peptidase A24 N-terminal domain CP48_RS19735 PF17291 N-terminal domain of M60-like peptidases CP48_RS19735 PF13322 Domain of unknown function (DUF4092) CP48_RS19735 PF13402 Peptidase M60, enhancin and enhancin-like CP48_RS19745 PF02652 L-lactate permease CP48_RS19750 PF01274 Malate synthase CP48_RS19755 PF03928 Haem-degrading CP48_RS19760 PF13183 4Fe-4S dicluster domain CP48_RS19760 PF02754 Cysteine-rich domain CP48_RS19770 PF01565 FAD binding domain CP48_RS19770 PF02913 FAD linked oxidases, C-terminal domain CP48_RS19775 PF00392 Bacterial regulatory proteins, gntR family CP48_RS19775 PF07729 FCD domain CP48_RS19785 PF14535 AMP-binding enzyme C-terminal domain CP48_RS19785 PF00501 AMP-binding enzyme CP48_RS19795 PF00550 Phosphopantetheine attachment site CP48_RS19800 PF00155 Aminotransferase class I and II CP48_RS19810 PF03739 Lipopolysaccharide export system permease LptF/LptG CP48_RS19815 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CP48_RS19825 PF01943 Polysaccharide biosynthesis protein CP48_RS19845 PF01384 Phosphate transporter family CP48_RS19850 PF03738 Glutathionylspermidine synthase preATP-grasp CP48_RS19850 PF05257 CHAP domain CP48_RS19855 PF02798 Glutathione S-transferase, N-terminal domain CP48_RS19860 PF01455 HupF/HypC family CP48_RS19865 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CP48_RS19870 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CP48_RS19875 PF01750 Hydrogenase maturation protease CP48_RS19880 PF00374 Nickel-dependent hydrogenase CP48_RS19885 PF03916 Polysulphide reductase, NrfD CP48_RS19890 PF13247 4Fe-4S dicluster domain CP48_RS19895 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CP48_RS19895 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CP48_RS19905 PF11115 Protein of unknown function (DUF2623) CP48_RS19910 PF01738 Dienelactone hydrolase family CP48_RS19915 PF00248 Aldo/keto reductase family CP48_RS19920 PF03350 Uncharacterized protein family, UPF0114 CP48_RS19930 PF02472 Biopolymer transport protein ExbD/TolR CP48_RS19935 PF01618 MotA/TolQ/ExbB proton channel family CP48_RS19945 PF01053 Cys/Met metabolism PLP-dependent enzyme CP48_RS19950 PF09335 SNARE associated Golgi protein CP48_RS19955 PF06719 AraC-type transcriptional regulator N-terminus CP48_RS19955 PF12833 Helix-turn-helix domain CP48_RS19965 PF00465 Iron-containing alcohol dehydrogenase CP48_RS19970 PF00248 Aldo/keto reductase family CP48_RS19980 PF04728 Lipoprotein leucine-zipper CP48_RS19985 PF11842 Domain of unknown function (DUF3362) CP48_RS19985 PF08497 Radical SAM N-terminal CP48_RS19985 PF04055 Radical SAM superfamily CP48_RS19990 PF00394 Multicopper oxidase CP48_RS19990 PF07731 Multicopper oxidase CP48_RS19990 PF07732 Multicopper oxidase CP48_RS19995 PF01553 Acyltransferase CP48_RS20000 PF03989 DNA gyrase C-terminal domain, beta-propeller CP48_RS20000 PF00521 DNA gyrase/topoisomerase IV, subunit A CP48_RS20005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS20010 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CP48_RS20015 PF15723 Motility quorum-sensing regulator, toxin of MqsA CP48_RS20020 PF06445 GyrI-like small molecule binding domain CP48_RS20025 PF04076 Bacterial OB fold (BOF) protein CP48_RS20030 PF00486 Transcriptional regulatory protein, C terminal CP48_RS20030 PF00072 Response regulator receiver domain CP48_RS20035 PF08521 Two-component sensor kinase N-terminal CP48_RS20035 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS20035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS20040 PF10840 Protein of unknown function (DUF2645) CP48_RS20055 PF02525 Flavodoxin-like fold CP48_RS20060 PF03992 Antibiotic biosynthesis monooxygenase CP48_RS20065 PF01751 Toprim domain CP48_RS20065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS20065 PF00986 DNA gyrase B subunit, carboxyl terminus CP48_RS20065 PF00204 DNA gyrase B CP48_RS20070 PF05728 Uncharacterised protein family (UPF0227) CP48_RS20075 PF00149 Calcineurin-like phosphoesterase CP48_RS20080 PF06853 Protein of unknown function (DUF1249) CP48_RS20085 PF00293 NUDIX domain CP48_RS20090 PF02321 Outer membrane efflux protein CP48_RS20100 PF06693 Protein of unknown function (DUF1190) CP48_RS20105 PF03738 Glutathionylspermidine synthase preATP-grasp CP48_RS20110 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CP48_RS20115 PF02535 ZIP Zinc transporter CP48_RS20125 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CP48_RS20130 PF04380 Membrane fusogenic activity CP48_RS20135 PF00419 Fimbrial protein CP48_RS20140 PF13954 PapC N-terminal domain CP48_RS20140 PF13953 PapC C-terminal domain CP48_RS20140 PF00577 Outer membrane usher protein CP48_RS20145 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS20145 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS20155 PF08971 Glycogen synthesis protein CP48_RS20160 PF07290 Protein of unknown function (DUF1449) CP48_RS20165 PF15975 Flotillin CP48_RS20165 PF01145 SPFH domain / Band 7 family CP48_RS20175 PF01467 Cytidylyltransferase-like CP48_RS20175 PF00294 pfkB family carbohydrate kinase CP48_RS20180 PF08335 GlnD PII-uridylyltransferase CP48_RS20180 PF03710 Glutamate-ammonia ligase adenylyltransferase CP48_RS20185 PF01928 CYTH domain CP48_RS20195 PF08239 Bacterial SH3 domain CP48_RS20200 PF01743 Poly A polymerase head domain CP48_RS20200 PF12627 Probable RNA and SrmB- binding site of polymerase A CP48_RS20200 PF01966 HD domain CP48_RS20205 PF02673 Bacitracin resistance protein BacA CP48_RS20210 PF02152 Dihydroneopterin aldolase CP48_RS20215 PF02660 Glycerol-3-phosphate acyltransferase CP48_RS20220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS20220 PF03466 LysR substrate binding domain CP48_RS20225 PF05681 Fumarate hydratase (Fumerase) CP48_RS20230 PF05683 Fumarase C-terminus CP48_RS20235 PF00939 Sodium:sulfate symporter transmembrane region CP48_RS20240 PF00814 Glycoprotease family CP48_RS20245 PF01165 Ribosomal protein S21 CP48_RS20250 PF08275 DNA primase catalytic core, N-terminal domain CP48_RS20250 PF01807 CHC2 zinc finger CP48_RS20250 PF10410 DnaB-helicase binding domain of primase CP48_RS20250 PF08278 DNA primase DnaG DnaB-binding CP48_RS20255 PF04546 Sigma-70, non-essential region CP48_RS20255 PF03979 Sigma-70 factor, region 1.1 CP48_RS20255 PF00140 Sigma-70 factor, region 1.2 CP48_RS20255 PF04542 Sigma-70 region 2 CP48_RS20255 PF04539 Sigma-70 region 3 CP48_RS20255 PF04545 Sigma-70, region 4 CP48_RS20260 PF03167 Uracil DNA glycosylase superfamily CP48_RS20270 PF04954 Siderophore-interacting protein CP48_RS20270 PF08021 Siderophore-interacting FAD-binding domain CP48_RS20275 PF03551 Transcriptional regulator PadR-like family CP48_RS20280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CP48_RS20280 PF08447 PAS fold CP48_RS20285 PF00202 Aminotransferase class-III CP48_RS20290 PF01588 Putative tRNA binding domain CP48_RS20295 PF00356 Bacterial regulatory proteins, lacI family CP48_RS20300 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CP48_RS20300 PF02929 Beta galactosidase small chain CP48_RS20300 PF00703 Glycosyl hydrolases family 2 CP48_RS20300 PF16353 Domain of unknown function(DUF4981) CP48_RS20300 PF02837 Glycosyl hydrolases family 2, sugar binding domain CP48_RS20305 PF04074 YhcH/YjgK/YiaL CP48_RS20310 PF13520 Amino acid permease CP48_RS20320 PF01204 Trehalase CP48_RS20325 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CP48_RS20325 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS20330 PF05175 Methyltransferase small domain CP48_RS20335 PF01863 Protein of unknown function DUF45 CP48_RS20340 PF02698 DUF218 domain CP48_RS20345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CP48_RS20350 PF03741 Integral membrane protein TerC family CP48_RS20355 PF00375 Sodium:dicarboxylate symporter family CP48_RS20360 PF10688 Bacterial inner membrane protein CP48_RS20365 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CP48_RS20365 PF08666 SAF domain CP48_RS20370 PF02614 Glucuronate isomerase CP48_RS20375 PF07690 Major Facilitator Superfamily CP48_RS20390 PF01527 Transposase CP48_RS20400 PF16967 E-set like domain CP48_RS20400 PF15976 CS1-pili formation C-terminal CP48_RS20400 PF17271 TcfC Usher-like barrel domain CP48_RS20405 PF04449 CS1 type fimbrial major subunit CP48_RS20415 PF00392 Bacterial regulatory proteins, gntR family CP48_RS20415 PF07729 FCD domain CP48_RS20420 PF09335 SNARE associated Golgi protein CP48_RS20425 PF13721 SecD export protein N-terminal TM region CP48_RS20430 PF06476 Protein of unknown function (DUF1090) CP48_RS20435 PF05957 Bacterial protein of unknown function (DUF883) CP48_RS20440 PF07332 Putative Actinobacterial Holin-X, holin superfamily III CP48_RS20445 PF13997 YqjK-like protein CP48_RS20450 PF07681 DoxX CP48_RS20455 PF13409 Glutathione S-transferase, N-terminal domain CP48_RS20460 PF05656 Protein of unknown function (DUF805) CP48_RS20465 PF05656 Protein of unknown function (DUF805) CP48_RS20470 PF03466 LysR substrate binding domain CP48_RS20470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS20475 PF02678 Pirin CP48_RS20475 PF17954 Quercetinase C-terminal cupin domain CP48_RS20485 PF03313 Serine dehydratase alpha chain CP48_RS20495 PF03315 Serine dehydratase beta chain CP48_RS20495 PF03313 Serine dehydratase alpha chain CP48_RS20500 PF01042 Endoribonuclease L-PSP CP48_RS20505 PF02901 Pyruvate formate lyase-like CP48_RS20505 PF01228 Glycine radical CP48_RS20510 PF00871 Acetokinase family CP48_RS20515 PF03222 Tryptophan/tyrosine permease family CP48_RS20520 PF00291 Pyridoxal-phosphate dependent enzyme CP48_RS20525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS20525 PF03466 LysR substrate binding domain CP48_RS20550 PF02595 Glycerate kinase family CP48_RS20555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CP48_RS20555 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CP48_RS20560 PF03328 HpcH/HpaI aldolase/citrate lyase family CP48_RS20565 PF07690 Major Facilitator Superfamily CP48_RS20570 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CP48_RS20570 PF08666 SAF domain CP48_RS20575 PF15937 prlF antitoxin for toxin YhaV_toxin CP48_RS20580 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system CP48_RS20585 PF00455 DeoR C terminal sensor domain CP48_RS20585 PF08220 DeoR-like helix-turn-helix domain CP48_RS20590 PF08013 Tagatose 6 phosphate kinase CP48_RS20595 PF03830 PTS system sorbose subfamily IIB component CP48_RS20600 PF03609 PTS system sorbose-specific iic component CP48_RS20605 PF03613 PTS system mannose/fructose/sorbose family IID component CP48_RS20610 PF03610 PTS system fructose IIA component CP48_RS20615 PF01979 Amidohydrolase family CP48_RS20620 PF01380 SIS domain CP48_RS20625 PF01116 Fructose-bisphosphate aldolase class-II CP48_RS20630 PF03830 PTS system sorbose subfamily IIB component CP48_RS20635 PF03609 PTS system sorbose-specific iic component CP48_RS20640 PF03613 PTS system mannose/fructose/sorbose family IID component CP48_RS20645 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CP48_RS20650 PF00419 Fimbrial protein CP48_RS20655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS20655 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS20660 PF13954 PapC N-terminal domain CP48_RS20660 PF13953 PapC C-terminal domain CP48_RS20660 PF00577 Outer membrane usher protein CP48_RS20665 PF00419 Fimbrial protein CP48_RS20670 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CP48_RS20675 PF04348 LppC putative lipoprotein CP48_RS20680 PF02021 Uncharacterised protein family UPF0102 CP48_RS20685 PF13580 SIS domain CP48_RS20690 PF04972 BON domain CP48_RS20695 PF03773 Predicted permease CP48_RS20700 PF13460 NAD(P)H-binding CP48_RS20705 PF01965 DJ-1/PfpI family CP48_RS20715 PF01541 GIY-YIG catalytic domain CP48_RS20720 PF13508 Acetyltransferase (GNAT) domain CP48_RS20725 PF02036 SCP-2 sterol transfer family CP48_RS20730 PF01136 Peptidase family U32 CP48_RS20735 PF01136 Peptidase family U32 CP48_RS20740 PF00296 Luciferase-like monooxygenase CP48_RS20745 PF03222 Tryptophan/tyrosine permease family CP48_RS20755 PF00270 DEAD/DEAH box helicase CP48_RS20755 PF03880 DbpA RNA binding domain CP48_RS20755 PF12343 Cold shock protein DEAD box A CP48_RS20755 PF00271 Helicase conserved C-terminal domain CP48_RS20760 PF13181 Tetratricopeptide repeat CP48_RS20760 PF07719 Tetratricopeptide repeat CP48_RS20765 PF00013 KH domain CP48_RS20765 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CP48_RS20765 PF03725 3' exoribonuclease family, domain 2 CP48_RS20765 PF01138 3' exoribonuclease family, domain 1 CP48_RS20765 PF00575 S1 RNA binding domain CP48_RS20770 PF00312 Ribosomal protein S15 CP48_RS20775 PF01509 TruB family pseudouridylate synthase (N terminal domain) CP48_RS20775 PF16198 tRNA pseudouridylate synthase B C-terminal domain CP48_RS20775 PF09157 Pseudouridine synthase II TruB, C-terminal CP48_RS20780 PF02033 Ribosome-binding factor A CP48_RS20785 PF00009 Elongation factor Tu GTP binding domain CP48_RS20785 PF11987 Translation-initiation factor 2 CP48_RS20785 PF04760 Translation initiation factor IF-2, N-terminal region CP48_RS20785 PF08364 Bacterial translation initiation factor IF-2 associated region CP48_RS20790 PF08529 NusA N-terminal domain CP48_RS20790 PF13184 NusA-like KH domain CP48_RS20790 PF00575 S1 RNA binding domain CP48_RS20795 PF17384 RimP C-terminal SH3 domain CP48_RS20795 PF02576 RimP N-terminal domain CP48_RS20805 PF00764 Arginosuccinate synthase CP48_RS20810 PF00884 Sulfatase CP48_RS20820 PF03840 Preprotein translocase SecG subunit CP48_RS20825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CP48_RS20825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CP48_RS20825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CP48_RS20825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CP48_RS20830 PF00809 Pterin binding enzyme CP48_RS20835 PF00004 ATPase family associated with various cellular activities (AAA) CP48_RS20835 PF17862 AAA+ lid domain CP48_RS20835 PF01434 Peptidase family M41 CP48_RS20835 PF06480 FtsH Extracellular CP48_RS20840 PF01728 FtsJ-like methyltransferase CP48_RS20845 PF01985 CRS1 / YhbY (CRM) domain CP48_RS20850 PF03449 Transcription elongation factor, N-terminal CP48_RS20850 PF01272 Transcription elongation factor, GreA/GreB, C-term CP48_RS20855 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CP48_RS20860 PF01018 GTP1/OBG CP48_RS20860 PF01926 50S ribosome-binding GTPase CP48_RS20865 PF00892 EamA-like transporter family CP48_RS20870 PF01016 Ribosomal L27 protein CP48_RS20875 PF00829 Ribosomal prokaryotic L21 protein CP48_RS20880 PF00348 Polyprenyl synthetase CP48_RS20885 PF13693 Winged helix-turn-helix DNA-binding CP48_RS20890 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CP48_RS20895 PF01722 BolA-like protein CP48_RS20900 PF13466 STAS domain CP48_RS20905 PF05494 MlaC protein CP48_RS20910 PF02470 MlaD protein CP48_RS20915 PF02405 Permease MlaE CP48_RS20920 PF00005 ABC transporter CP48_RS20925 PF01699 Sodium/calcium exchanger protein CP48_RS20930 PF01380 SIS domain CP48_RS20930 PF00571 CBS domain CP48_RS20940 PF06835 Lipopolysaccharide-assembly, LptC-related CP48_RS20945 PF03968 OstA-like protein CP48_RS20950 PF00005 ABC transporter CP48_RS20950 PF12399 Branched-chain amino acid ATP-binding cassette transporter CP48_RS20955 PF00309 Sigma-54 factor, Activator interacting domain (AID) CP48_RS20955 PF04963 Sigma-54 factor, core binding domain CP48_RS20955 PF04552 Sigma-54, DNA binding domain CP48_RS20960 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CP48_RS20965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS20970 PF03668 P-loop ATPase protein family CP48_RS20975 PF00381 PTS HPr component phosphorylation site CP48_RS20980 PF10707 PhoP regulatory network protein YrbL CP48_RS20985 PF00912 Transglycosylase CP48_RS20995 PF00072 Response regulator receiver domain CP48_RS20995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS20995 PF18415 Histidine kinase receptor ArcB trans-membrane domain CP48_RS20995 PF01627 Hpt domain CP48_RS20995 PF00989 PAS fold CP48_RS20995 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS21000 PF16199 Radical_SAM C-terminal domain CP48_RS21000 PF04055 Radical SAM superfamily CP48_RS21005 PF01493 GXGXG motif CP48_RS21005 PF01645 Conserved region in glutamate synthase CP48_RS21005 PF04898 Glutamate synthase central domain CP48_RS21005 PF00310 Glutamine amidotransferases class-II CP48_RS21010 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS21010 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CP48_RS21015 PF06250 YhcG PDDEXK nuclease domain CP48_RS21015 PF17761 DUF1016 N-terminal domain CP48_RS21025 PF04074 YhcH/YjgK/YiaL CP48_RS21030 PF00480 ROK family CP48_RS21035 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CP48_RS21040 PF07690 Major Facilitator Superfamily CP48_RS21045 PF00701 Dihydrodipicolinate synthetase family CP48_RS21050 PF00392 Bacterial regulatory proteins, gntR family CP48_RS21050 PF07729 FCD domain CP48_RS21055 PF03606 C4-dicarboxylate anaerobic carrier CP48_RS21060 PF04386 Stringent starvation protein B CP48_RS21065 PF00043 Glutathione S-transferase, C-terminal domain CP48_RS21065 PF02798 Glutathione S-transferase, N-terminal domain CP48_RS21070 PF00380 Ribosomal protein S9/S16 CP48_RS21075 PF00572 Ribosomal protein L13 CP48_RS21080 PF03969 AFG1-like ATPase CP48_RS21085 PF06295 Protein of unknown function (DUF1043) CP48_RS21090 PF13180 PDZ domain CP48_RS21090 PF00595 PDZ domain CP48_RS21095 PF13180 PDZ domain CP48_RS21100 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CP48_RS21100 PF00056 lactate/malate dehydrogenase, NAD binding domain CP48_RS21105 PF02863 Arginine repressor, C-terminal domain CP48_RS21105 PF01316 Arginine repressor, DNA binding domain CP48_RS21110 PF07338 Protein of unknown function (DUF1471) CP48_RS21115 PF01337 Barstar (barnase inhibitor) CP48_RS21120 PF04632 Fusaric acid resistance protein family CP48_RS21125 PF13533 Biotin-lipoyl like CP48_RS21130 PF07869 Protein of unknown function (DUF1656) CP48_RS21135 PF03466 LysR substrate binding domain CP48_RS21135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS21140 PF01523 Putative modulator of DNA gyrase CP48_RS21145 PF13116 Protein of unknown function CP48_RS21145 PF13502 AsmA-like C-terminal region CP48_RS21150 PF00575 S1 RNA binding domain CP48_RS21150 PF10150 Ribonuclease E/G family CP48_RS21155 PF02545 Maf-like protein CP48_RS21160 PF04093 rod shape-determining protein MreD CP48_RS21165 PF04085 rod shape-determining protein MreC CP48_RS21180 PF17157 Gammaproteobacterial periplasmic sensor domain CP48_RS21180 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS21180 PF00563 EAL domain CP48_RS21185 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS21185 PF00107 Zinc-binding dehydrogenase CP48_RS21200 PF01794 Ferric reductase like transmembrane component CP48_RS21205 PF00364 Biotin-requiring enzyme CP48_RS21210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CP48_RS21210 PF02785 Biotin carboxylase C-terminal domain CP48_RS21210 PF00289 Biotin carboxylase, N-terminal domain CP48_RS21215 PF06196 Protein of unknown function (DUF997) CP48_RS21220 PF00474 Sodium:solute symporter family CP48_RS21230 PF01207 Dihydrouridine synthase (Dus) CP48_RS21235 PF02954 Bacterial regulatory protein, Fis family CP48_RS21240 PF01555 DNA methylase CP48_RS21245 PF10831 Protein of unknown function (DUF2556) CP48_RS21250 PF08361 MAATS-type transcriptional repressor, C-terminal region CP48_RS21250 PF00440 Bacterial regulatory proteins, tetR family CP48_RS21255 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS21255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS21260 PF00873 AcrB/AcrD/AcrF family CP48_RS21275 PF00497 Bacterial extracellular solute-binding proteins, family 3 CP48_RS21280 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS21285 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS21290 PF00005 ABC transporter CP48_RS21330 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS21335 PF07369 Protein of unknown function (DUF1488) CP48_RS21340 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CP48_RS21340 PF01488 Shikimate / quinate 5-dehydrogenase CP48_RS21340 PF08501 Shikimate dehydrogenase substrate binding domain CP48_RS21345 PF01300 Telomere recombination CP48_RS21350 PF01396 Topoisomerase DNA binding C4 zinc finger CP48_RS21355 PF04361 Protein of unknown function (DUF494) CP48_RS21360 PF02481 DNA recombination-mediator protein A CP48_RS21360 PF17782 DprA winged helix domain CP48_RS21365 PF01327 Polypeptide deformylase CP48_RS21370 PF00551 Formyl transferase CP48_RS21370 PF02911 Formyl transferase, C-terminal domain CP48_RS21375 PF01029 NusB family CP48_RS21375 PF01189 16S rRNA methyltransferase RsmB/F CP48_RS21380 PF02254 TrkA-N domain CP48_RS21380 PF02080 TrkA-C domain CP48_RS21385 PF01741 Large-conductance mechanosensitive channel, MscL CP48_RS21390 PF03889 Alternative ribosome-rescue factor A CP48_RS21395 PF13411 MerR HTH family regulatory protein CP48_RS21400 PF09350 Domain of unknown function (DUF1992) CP48_RS21405 PF01196 Ribosomal protein L17 CP48_RS21410 PF01000 RNA polymerase Rpb3/RpoA insert domain CP48_RS21410 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CP48_RS21410 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CP48_RS21415 PF01479 S4 domain CP48_RS21415 PF00163 Ribosomal protein S4/S9 N-terminal domain CP48_RS21420 PF00411 Ribosomal protein S11 CP48_RS21425 PF00416 Ribosomal protein S13/S18 CP48_RS21430 PF00444 Ribosomal protein L36 CP48_RS21435 PF00344 SecY translocase CP48_RS21440 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CP48_RS21445 PF00327 Ribosomal protein L30p/L7e CP48_RS21450 PF03719 Ribosomal protein S5, C-terminal domain CP48_RS21450 PF00333 Ribosomal protein S5, N-terminal domain CP48_RS21455 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CP48_RS21460 PF00347 Ribosomal protein L6 CP48_RS21465 PF00410 Ribosomal protein S8 CP48_RS21470 PF00253 Ribosomal protein S14p/S29e CP48_RS21475 PF00281 Ribosomal protein L5 CP48_RS21475 PF00673 ribosomal L5P family C-terminus CP48_RS21480 PF00467 KOW motif CP48_RS21480 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CP48_RS21485 PF00238 Ribosomal protein L14p/L23e CP48_RS21490 PF00366 Ribosomal protein S17 CP48_RS21495 PF00831 Ribosomal L29 protein CP48_RS21500 PF00252 Ribosomal protein L16p/L10e CP48_RS21505 PF00189 Ribosomal protein S3, C-terminal domain CP48_RS21505 PF07650 KH domain CP48_RS21510 PF00237 Ribosomal protein L22p/L17e CP48_RS21515 PF00203 Ribosomal protein S19 CP48_RS21520 PF00181 Ribosomal Proteins L2, RNA binding domain CP48_RS21520 PF03947 Ribosomal Proteins L2, C-terminal domain CP48_RS21525 PF00276 Ribosomal protein L23 CP48_RS21530 PF00573 Ribosomal protein L4/L1 family CP48_RS21535 PF00297 Ribosomal protein L3 CP48_RS21540 PF00338 Ribosomal protein S10p/S20e CP48_RS21550 PF13401 AAA domain CP48_RS21550 PF01471 Putative peptidoglycan binding domain CP48_RS21555 PF11356 Type II secretion system protein C CP48_RS21560 PF03958 Bacterial type II/III secretion system short domain CP48_RS21560 PF00263 Bacterial type II and III secretion system protein CP48_RS21565 PF00437 Type II/IV secretion system protein CP48_RS21570 PF00482 Type II secretion system (T2SS), protein F CP48_RS21575 PF07963 Prokaryotic N-terminal methylation motif CP48_RS21575 PF08334 Type II secretion system (T2SS), protein G CP48_RS21580 PF12019 Type II transport protein GspH CP48_RS21580 PF07963 Prokaryotic N-terminal methylation motif CP48_RS21585 PF02501 Type II secretion system (T2SS), protein I CP48_RS21585 PF07963 Prokaryotic N-terminal methylation motif CP48_RS21590 PF07963 Prokaryotic N-terminal methylation motif CP48_RS21590 PF11612 Type II secretion system (T2SS), protein J CP48_RS21595 PF03934 Type II secretion system (T2SS), protein K CP48_RS21600 PF12693 GspL periplasmic domain CP48_RS21600 PF05134 Type II secretion system (T2SS), protein L CP48_RS21605 PF04612 Type II secretion system (T2SS), protein M CP48_RS21615 PF00210 Ferritin-like domain CP48_RS21620 PF04324 BFD-like [2Fe-2S] binding domain CP48_RS21625 PF02839 Carbohydrate binding domain CP48_RS21630 PF00009 Elongation factor Tu GTP binding domain CP48_RS21630 PF03144 Elongation factor Tu domain 2 CP48_RS21630 PF03143 Elongation factor Tu C-terminal domain CP48_RS21635 PF03144 Elongation factor Tu domain 2 CP48_RS21635 PF00679 Elongation factor G C-terminus CP48_RS21635 PF03764 Elongation factor G, domain IV CP48_RS21635 PF14492 Elongation Factor G, domain II CP48_RS21635 PF00009 Elongation factor Tu GTP binding domain CP48_RS21640 PF00177 Ribosomal protein S7p/S5e CP48_RS21645 PF00164 Ribosomal protein S12/S23 CP48_RS21650 PF04077 DsrH like protein CP48_RS21655 PF02635 DsrE/DsrF-like family CP48_RS21660 PF02635 DsrE/DsrF-like family CP48_RS21665 PF13309 HTH domain CP48_RS21665 PF08348 YheO-like PAS domain CP48_RS21670 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CP48_RS21670 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CP48_RS21675 PF04102 SlyX CP48_RS21680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CP48_RS21685 PF09526 Probable metal-binding protein (DUF2387) CP48_RS21690 PF00999 Sodium/hydrogen exchanger family CP48_RS21690 PF02254 TrkA-N domain CP48_RS21695 PF02525 Flavodoxin-like fold CP48_RS21700 PF12848 ABC transporter CP48_RS21700 PF00005 ABC transporter CP48_RS21705 PF00561 alpha/beta hydrolase fold CP48_RS21710 PF06794 Uncharacterised protein family (UPF0270) CP48_RS21715 PF00485 Phosphoribulokinase / Uridine kinase family CP48_RS21720 PF02566 OsmC-like protein CP48_RS21730 PF00027 Cyclic nucleotide-binding domain CP48_RS21730 PF13545 Crp-like helix-turn-helix domain CP48_RS21735 PF12805 FUSC-like inner membrane protein yccS CP48_RS21740 PF00202 Aminotransferase class-III CP48_RS21745 PF00117 Glutamine amidotransferase class-I CP48_RS21750 PF02661 Fic/DOC family CP48_RS21755 PF10832 Protein of unknown function (DUF2559) CP48_RS21760 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CP48_RS21765 PF07690 Major Facilitator Superfamily CP48_RS21770 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS21770 PF18267 Rubredoxin NAD+ reductase C-terminal domain CP48_RS21770 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CP48_RS21770 PF04324 BFD-like [2Fe-2S] binding domain CP48_RS21770 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CP48_RS21775 PF13806 Rieske-like [2Fe-2S] domain CP48_RS21780 PF01226 Formate/nitrite transporter CP48_RS21785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CP48_RS21785 PF10414 Sirohaem synthase dimerisation region CP48_RS21785 PF14824 Sirohaem biosynthesis protein central CP48_RS21790 PF13978 Protein of unknown function (DUF4223) CP48_RS21795 PF13520 Amino acid permease CP48_RS21800 PF01380 SIS domain CP48_RS21805 PF01261 Xylose isomerase-like TIM barrel CP48_RS21810 PF00294 pfkB family carbohydrate kinase CP48_RS21815 PF07702 UTRA domain CP48_RS21815 PF00392 Bacterial regulatory proteins, gntR family CP48_RS21820 PF00155 Aminotransferase class I and II CP48_RS21825 PF10797 Protein of unknown function CP48_RS21830 PF10941 Protein of unknown function DUF2620 CP48_RS21835 PF02126 Phosphotriesterase family CP48_RS21840 PF01676 Metalloenzyme superfamily CP48_RS21845 PF01168 Alanine racemase, N-terminal domain CP48_RS21855 PF14503 YhfZ C-terminal domain CP48_RS21855 PF14502 Helix-turn-helix domain CP48_RS21860 PF00579 tRNA synthetases class I (W and Y) CP48_RS21865 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS21870 PF00834 Ribulose-phosphate 3 epimerase family CP48_RS21875 PF02086 D12 class N6 adenine-specific DNA methyltransferase CP48_RS21880 PF05036 Sporulation related domain CP48_RS21885 PF01761 3-dehydroquinate synthase CP48_RS21890 PF01202 Shikimate kinase CP48_RS21895 PF00263 Bacterial type II and III secretion system protein CP48_RS21895 PF03958 Bacterial type II/III secretion system short domain CP48_RS21900 PF10748 DNA utilization proteins HofP CP48_RS21910 PF05137 Fimbrial assembly protein (PilN) CP48_RS21920 PF00905 Penicillin binding protein transpeptidase domain CP48_RS21920 PF17092 Penicillin-binding protein OB-like domain CP48_RS21920 PF00912 Transglycosylase CP48_RS21925 PF00293 NUDIX domain CP48_RS21930 PF07095 Intracellular growth attenuator protein IgaA CP48_RS21935 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS21940 PF01479 S4 domain CP48_RS21945 PF01430 Hsp33 protein CP48_RS21950 PF13687 Domain of unknown function (DUF4153) CP48_RS21960 PF01293 Phosphoenolpyruvate carboxykinase CP48_RS21965 PF00672 HAMP domain CP48_RS21965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS21965 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS21970 PF00486 Transcriptional regulatory protein, C terminal CP48_RS21970 PF00072 Response regulator receiver domain CP48_RS21975 PF01272 Transcription elongation factor, GreA/GreB, C-term CP48_RS21975 PF03449 Transcription elongation factor, N-terminal CP48_RS21980 PF17674 HHH domain CP48_RS21980 PF00575 S1 RNA binding domain CP48_RS21980 PF16921 Tex protein YqgF-like domain CP48_RS21980 PF09371 Tex-like protein N-terminal domain CP48_RS21985 PF04023 FeoA domain CP48_RS21990 PF07670 Nucleoside recognition CP48_RS21990 PF02421 Ferrous iron transport protein B CP48_RS21990 PF17910 FeoB cytosolic helical domain CP48_RS21990 PF07664 Ferrous iron transport protein B C terminus CP48_RS21995 PF09012 FeoC like transcriptional regulator CP48_RS22000 PF04754 Putative transposase, YhgA-like CP48_RS22005 PF00561 alpha/beta hydrolase fold CP48_RS22010 PF00156 Phosphoribosyl transferase domain CP48_RS22015 PF01521 Iron-sulphur cluster biosynthesis CP48_RS22015 PF01106 NifU-like domain CP48_RS22020 PF02447 GntP family permease CP48_RS22025 PF02446 4-alpha-glucanotransferase CP48_RS22030 PF00343 Carbohydrate phosphorylase CP48_RS22035 PF00196 Bacterial regulatory proteins, luxR family CP48_RS22035 PF17874 MalT-like TPR region CP48_RS22040 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain CP48_RS22040 PF01137 RNA 3'-terminal phosphate cyclase CP48_RS22045 PF01139 tRNA-splicing ligase RtcB CP48_RS22050 PF00158 Sigma-54 interaction domain CP48_RS22050 PF06956 Regulator of RNA terminal phosphate cyclase CP48_RS22055 PF08220 DeoR-like helix-turn-helix domain CP48_RS22055 PF00455 DeoR C terminal sensor domain CP48_RS22060 PF01694 Rhomboid family CP48_RS22060 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CP48_RS22065 PF00581 Rhodanese-like domain CP48_RS22070 PF01266 FAD dependent oxidoreductase CP48_RS22070 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CP48_RS22080 PF00343 Carbohydrate phosphorylase CP48_RS22085 PF08323 Starch synthase catalytic domain CP48_RS22085 PF00534 Glycosyl transferases group 1 CP48_RS22090 PF00483 Nucleotidyl transferase CP48_RS22095 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CP48_RS22095 PF00128 Alpha amylase, catalytic domain CP48_RS22095 PF18390 Glycogen debranching enzyme C-terminal domain CP48_RS22100 PF00128 Alpha amylase, catalytic domain CP48_RS22100 PF02806 Alpha amylase, C-terminal all-beta domain CP48_RS22100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CP48_RS22105 PF02774 Semialdehyde dehydrogenase, dimerisation domain CP48_RS22105 PF01118 Semialdehyde dehydrogenase, NAD binding domain CP48_RS22110 PF01914 MarC family integral membrane protein CP48_RS22115 PF02447 GntP family permease CP48_RS22120 PF01202 Shikimate kinase CP48_RS22125 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CP48_RS22125 PF00356 Bacterial regulatory proteins, lacI family CP48_RS22130 PF02678 Pirin CP48_RS22130 PF17954 Quercetinase C-terminal cupin domain CP48_RS22135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CP48_RS22135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CP48_RS22140 PF00583 Acetyltransferase (GNAT) family CP48_RS22145 PF05638 Type VI secretion system effector, Hcp CP48_RS22155 PF15567 Immunity protein 35 CP48_RS22165 PF10956 Protein of unknown function (DUF2756) CP48_RS22170 PF03009 Glycerophosphoryl diester phosphodiesterase family CP48_RS22175 PF17912 MalK OB fold domain CP48_RS22175 PF00005 ABC transporter CP48_RS22180 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS22185 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS22190 PF13416 Bacterial extracellular solute-binding protein CP48_RS22200 PF00005 ABC transporter CP48_RS22205 PF12399 Branched-chain amino acid ATP-binding cassette transporter CP48_RS22205 PF00005 ABC transporter CP48_RS22210 PF02653 Branched-chain amino acid transport system / permease component CP48_RS22210 PF11862 Domain of unknown function (DUF3382) CP48_RS22215 PF02653 Branched-chain amino acid transport system / permease component CP48_RS22220 PF13458 Periplasmic binding protein CP48_RS22225 PF12568 Acetyltransferase (GNAT) domain, PanZ CP48_RS22235 PF13458 Periplasmic binding protein CP48_RS22240 PF04545 Sigma-70, region 4 CP48_RS22240 PF04542 Sigma-70 region 2 CP48_RS22245 PF02687 FtsX-like permease family CP48_RS22245 PF18075 FtsX extracellular domain CP48_RS22250 PF00005 ABC transporter CP48_RS22255 PF02881 SRP54-type protein, helical bundle domain CP48_RS22255 PF00448 SRP54-type protein, GTPase domain CP48_RS22265 PF06611 Protein of unknown function (DUF1145) CP48_RS22270 PF10694 Protein of unknown function (DUF2500) CP48_RS22275 PF07947 YhhN family CP48_RS22280 PF00403 Heavy-metal-associated domain CP48_RS22285 PF01206 Sulfurtransferase TusA CP48_RS22290 PF02592 Putative vitamin uptake transporter CP48_RS22295 PF08786 DcrB CP48_RS22300 PF07690 Major Facilitator Superfamily CP48_RS22305 PF01594 AI-2E family transporter CP48_RS22310 PF01648 4'-phosphopantetheinyl transferase superfamily CP48_RS22315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS22320 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS22325 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS22330 PF00005 ABC transporter CP48_RS22335 PF00005 ABC transporter CP48_RS22340 PF01402 Ribbon-helix-helix protein, copG family CP48_RS22340 PF08753 NikR C terminal nickel binding domain CP48_RS22360 PF00005 ABC transporter CP48_RS22365 PF13533 Biotin-lipoyl like CP48_RS22370 PF13258 Domain of unknown function (DUF4049) CP48_RS22375 PF13258 Domain of unknown function (DUF4049) CP48_RS22390 PF10951 Protein of unknown function (DUF2776) CP48_RS22400 PF01384 Phosphate transporter family CP48_RS22405 PF10625 Universal stress protein B (UspB) CP48_RS22410 PF00582 Universal stress protein family CP48_RS22415 PF00854 POT family CP48_RS22420 PF04445 Putative SAM-dependent methyltransferase CP48_RS22425 PF01432 Peptidase family M3 CP48_RS22430 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CP48_RS22435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP48_RS22435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS22450 PF01022 Bacterial regulatory protein, arsR family CP48_RS22455 PF02040 Arsenical pump membrane protein CP48_RS22460 PF03960 ArsC family CP48_RS22470 PF03843 Outer membrane lipoprotein Slp family CP48_RS22475 PF00196 Bacterial regulatory proteins, luxR family CP48_RS22480 PF02308 MgtC family CP48_RS22485 PF06411 HdeA/HdeB family CP48_RS22490 PF06411 HdeA/HdeB family CP48_RS22495 PF03729 Short repeat of unknown function (DUF308) CP48_RS22500 PF00196 Bacterial regulatory proteins, luxR family CP48_RS22510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS22510 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS22515 PF00873 AcrB/AcrD/AcrF family CP48_RS22520 PF12833 Helix-turn-helix domain CP48_RS22525 PF12833 Helix-turn-helix domain CP48_RS22530 PF00282 Pyridoxal-dependent decarboxylase conserved domain CP48_RS22535 PF00034 Cytochrome c CP48_RS22535 PF14376 Haem-binding domain CP48_RS22535 PF03150 Di-haem cytochrome c peroxidase CP48_RS22540 PF01204 Trehalase CP48_RS22545 PF00196 Bacterial regulatory proteins, luxR family CP48_RS22550 PF03466 LysR substrate binding domain CP48_RS22550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS22555 PF03631 Virulence factor BrkB CP48_RS22560 PF00083 Sugar (and other) transporter CP48_RS22560 PF07690 Major Facilitator Superfamily CP48_RS22565 PF05170 AsmA family CP48_RS22570 PF00563 EAL domain CP48_RS22580 PF01609 Transposase DDE domain CP48_RS22585 PF00294 pfkB family carbohydrate kinase CP48_RS22590 PF00675 Insulinase (Peptidase family M16) CP48_RS22590 PF05193 Peptidase M16 inactive domain CP48_RS22595 PF00375 Sodium:dicarboxylate symporter family CP48_RS22600 PF00672 HAMP domain CP48_RS22600 PF17154 Gammaproteobacterial periplasmic sensor domain CP48_RS22600 PF00563 EAL domain CP48_RS22600 PF00990 Diguanylate cyclase, GGDEF domain CP48_RS22605 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CP48_RS22610 PF01270 Glycosyl hydrolases family 8 CP48_RS22615 PF03170 Bacterial cellulose synthase subunit CP48_RS22620 PF03400 IS1 transposase CP48_RS22625 PF07238 PilZ domain CP48_RS22625 PF00535 Glycosyl transferase family 2 CP48_RS22625 PF03552 Cellulose synthase CP48_RS22630 PF06564 Cellulose biosynthesis protein BcsQ CP48_RS22635 PF10945 Cellulose biosynthesis protein BcsR CP48_RS22640 PF10995 Cellulose biosynthesis GIL CP48_RS22645 PF11120 Cellulose biosynthesis protein BcsF CP48_RS22650 PF11658 Cellulose biosynthesis protein BcsG CP48_RS22655 PF13940 Toxin Ldr, type I toxin-antitoxin system CP48_RS22660 PF13940 Toxin Ldr, type I toxin-antitoxin system CP48_RS22665 PF13940 Toxin Ldr, type I toxin-antitoxin system CP48_RS22675 PF03222 Tryptophan/tyrosine permease family CP48_RS22680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP48_RS22680 PF00005 ABC transporter CP48_RS22685 PF00005 ABC transporter CP48_RS22685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CP48_RS22690 PF12911 N-terminal TM domain of oligopeptide transport permease C CP48_RS22690 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS22695 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS22705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CP48_RS22725 PF00884 Sulfatase CP48_RS22725 PF08019 Phosphoethanolamine transferase EptA/EptB CP48_RS22730 PF07690 Major Facilitator Superfamily CP48_RS22735 PF03797 Autotransporter beta-domain CP48_RS22740 PF03352 Methyladenine glycosylase CP48_RS22745 PF00583 Acetyltransferase (GNAT) family CP48_RS22750 PF18364 Molybdopterin oxidoreductase N-terminal domain CP48_RS22750 PF00384 Molybdopterin oxidoreductase CP48_RS22750 PF01568 Molydopterin dinucleotide binding domain CP48_RS22755 PF13488 Glycine zipper CP48_RS22755 PF00691 OmpA family CP48_RS22760 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CP48_RS22760 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CP48_RS22765 PF11254 Protein of unknown function (DUF3053) CP48_RS22770 PF01381 Helix-turn-helix CP48_RS22775 PF00313 'Cold-shock' DNA-binding domain CP48_RS22780 PF01848 Hok/gef family CP48_RS22785 PF13276 HTH-like domain CP48_RS22785 PF13333 Integrase core domain CP48_RS22785 PF00665 Integrase core domain CP48_RS22795 PF05746 DALR anticodon binding domain CP48_RS22795 PF02092 Glycyl-tRNA synthetase beta subunit CP48_RS22800 PF02091 Glycyl-tRNA synthetase alpha subunit CP48_RS22805 PF13983 YsaB-like lipoprotein CP48_RS22810 PF01757 Acyltransferase family CP48_RS22815 PF05360 yiaA/B two helix domain CP48_RS22820 PF05360 yiaA/B two helix domain CP48_RS22825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CP48_RS22825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CP48_RS22835 PF13407 Periplasmic binding protein domain CP48_RS22840 PF00005 ABC transporter CP48_RS22845 PF02653 Branched-chain amino acid transport system / permease component CP48_RS22850 PF12833 Helix-turn-helix domain CP48_RS22855 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CP48_RS22860 PF00128 Alpha amylase, catalytic domain CP48_RS22865 PF00155 Aminotransferase class I and II CP48_RS22875 PF13247 4Fe-4S dicluster domain CP48_RS22880 PF09339 IclR helix-turn-helix domain CP48_RS22880 PF01614 Bacterial transcriptional regulator CP48_RS22885 PF02615 Malate/L-lactate dehydrogenase CP48_RS22890 PF04074 YhcH/YjgK/YiaL CP48_RS22895 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CP48_RS22900 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CP48_RS22905 PF03480 Bacterial extracellular solute-binding protein, family 7 CP48_RS22910 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CP48_RS22910 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CP48_RS22915 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CP48_RS22920 PF01261 Xylose isomerase-like TIM barrel CP48_RS22925 PF00596 Class II Aldolase and Adducin N-terminal domain CP48_RS22930 PF01609 Transposase DDE domain CP48_RS22935 PF00596 Class II Aldolase and Adducin N-terminal domain CP48_RS22940 PF06629 MltA-interacting protein MipA CP48_RS22945 PF03466 LysR substrate binding domain CP48_RS22945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS22950 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS22950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS22955 PF11742 Protein of unknown function (DUF3302) CP48_RS22965 PF00171 Aldehyde dehydrogenase family CP48_RS22970 PF00465 Iron-containing alcohol dehydrogenase CP48_RS22975 PF00009 Elongation factor Tu GTP binding domain CP48_RS22975 PF03144 Elongation factor Tu domain 2 CP48_RS22975 PF09106 Elongation factor SelB, winged helix CP48_RS22975 PF09107 Elongation factor SelB, winged helix CP48_RS22980 PF03841 L-seryl-tRNA selenium transferase CP48_RS22980 PF12390 Selenocysteine synthase N terminal CP48_RS22985 PF13417 Glutathione S-transferase, N-terminal domain CP48_RS22985 PF00043 Glutathione S-transferase, C-terminal domain CP48_RS22990 PF03527 RHS protein CP48_RS22990 PF05593 RHS Repeat CP48_RS22990 PF15606 Bacterial toxin 34 CP48_RS22995 PF03130 PBS lyase HEAT-like repeat CP48_RS23000 PF03527 RHS protein CP48_RS23010 PF15596 Immunity protein 57 CP48_RS23015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS23015 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS23020 PF11742 Protein of unknown function (DUF3302) CP48_RS23025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS23025 PF02378 Phosphotransferase system, EIIC CP48_RS23025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS23030 PF01232 Mannitol dehydrogenase Rossmann domain CP48_RS23030 PF08125 Mannitol dehydrogenase C-terminal domain CP48_RS23035 PF05068 Mannitol repressor CP48_RS23045 PF10928 Protein of unknown function (DUF2810) CP48_RS23050 PF11622 Protein of unknown function (DUF3251) CP48_RS23055 PF13018 Extended Signal Peptide of Type V secretion system CP48_RS23055 PF05662 Coiled stalk of trimeric autotransporter adhesin CP48_RS23055 PF03895 YadA-like membrane anchor domain CP48_RS23055 PF05658 Head domain of trimeric autotransporter adhesin CP48_RS23060 PF02652 L-lactate permease CP48_RS23065 PF00392 Bacterial regulatory proteins, gntR family CP48_RS23065 PF07729 FCD domain CP48_RS23070 PF01070 FMN-dependent dehydrogenase CP48_RS23075 PF00588 SpoU rRNA Methylase family CP48_RS23080 PF06426 Serine acetyltransferase, N-terminal CP48_RS23080 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS23085 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CP48_RS23085 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CP48_RS23090 PF02556 Preprotein translocase subunit SecB CP48_RS23095 PF00462 Glutaredoxin CP48_RS23100 PF00581 Rhodanese-like domain CP48_RS23105 PF01676 Metalloenzyme superfamily CP48_RS23105 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CP48_RS23110 PF01551 Peptidase family M23 CP48_RS23115 PF04748 Divergent polysaccharide deacetylase CP48_RS23120 PF00535 Glycosyl transferase family 2 CP48_RS23125 PF00107 Zinc-binding dehydrogenase CP48_RS23125 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS23130 PF00155 Aminotransferase class I and II CP48_RS23135 PF01370 NAD dependent epimerase/dehydratase family CP48_RS23140 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CP48_RS23145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CP48_RS23160 PF01501 Glycosyl transferase family 8 CP48_RS23160 PF08437 Glycosyl transferase family 8 C-terminal CP48_RS23165 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) CP48_RS23170 PF08437 Glycosyl transferase family 8 C-terminal CP48_RS23170 PF01501 Glycosyl transferase family 8 CP48_RS23175 PF01501 Glycosyl transferase family 8 CP48_RS23175 PF08437 Glycosyl transferase family 8 C-terminal CP48_RS23185 PF13439 Glycosyltransferase Family 4 CP48_RS23185 PF00534 Glycosyl transferases group 1 CP48_RS23190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CP48_RS23195 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CP48_RS23200 PF01467 Cytidylyltransferase-like CP48_RS23205 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CP48_RS23205 PF06827 Zinc finger found in FPG and IleRS CP48_RS23205 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CP48_RS23210 PF00471 Ribosomal protein L33 CP48_RS23215 PF00830 Ribosomal L28 family CP48_RS23220 PF04002 RadC-like JAB domain CP48_RS23225 PF02441 Flavoprotein CP48_RS23225 PF04127 DNA / pantothenate metabolism flavoprotein CP48_RS23230 PF00692 dUTPase CP48_RS23235 PF00440 Bacterial regulatory proteins, tetR family CP48_RS23240 PF00156 Phosphoribosyl transferase domain CP48_RS23245 PF01138 3' exoribonuclease family, domain 1 CP48_RS23245 PF03725 3' exoribonuclease family, domain 2 CP48_RS23250 PF08340 Domain of unknown function (DUF1732) CP48_RS23250 PF03755 YicC-like family, N-terminal region CP48_RS23260 PF03458 UPF0126 domain CP48_RS23265 PF01653 NAD-dependent DNA ligase adenylation domain CP48_RS23265 PF03120 NAD-dependent DNA ligase OB-fold domain CP48_RS23270 PF00625 Guanylate kinase CP48_RS23275 PF01192 RNA polymerase Rpb6 CP48_RS23280 PF04607 Region found in RelA / SpoT proteins CP48_RS23280 PF13291 ACT domain CP48_RS23280 PF02824 TGS domain CP48_RS23285 PF12105 SpoU, rRNA methylase, C-terminal CP48_RS23285 PF00588 SpoU rRNA Methylase family CP48_RS23290 PF00271 Helicase conserved C-terminal domain CP48_RS23290 PF00270 DEAD/DEAH box helicase CP48_RS23290 PF17191 RecG wedge domain CP48_RS23295 PF03616 Sodium/glutamate symporter CP48_RS23300 PF00860 Permease family CP48_RS23305 PF05170 AsmA family CP48_RS23310 PF13802 Galactose mutarotase-like CP48_RS23310 PF01055 Glycosyl hydrolases family 31 CP48_RS23325 PF00589 Phage integrase family CP48_RS23325 PF14659 Phage integrase, N-terminal SAM-like domain CP48_RS23325 PF13356 Arm DNA-binding domain CP48_RS23370 PF17345 Family of unknown function (DUF5375) CP48_RS23385 PF07690 Major Facilitator Superfamily CP48_RS23390 PF00892 EamA-like transporter family CP48_RS23395 PF03180 NLPA lipoprotein CP48_RS23410 PF07690 Major Facilitator Superfamily CP48_RS23415 PF06711 Protein of unknown function (DUF1198) CP48_RS23420 PF00860 Permease family CP48_RS23425 PF01979 Amidohydrolase family CP48_RS23425 PF13382 Adenine deaminase C-terminal domain CP48_RS23430 PF07690 Major Facilitator Superfamily CP48_RS23435 PF07690 Major Facilitator Superfamily CP48_RS23440 PF05231 MASE1 CP48_RS23440 PF07730 Histidine kinase CP48_RS23440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS23445 PF00072 Response regulator receiver domain CP48_RS23445 PF00196 Bacterial regulatory proteins, luxR family CP48_RS23450 PF01842 ACT domain CP48_RS23455 PF00205 Thiamine pyrophosphate enzyme, central domain CP48_RS23455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP48_RS23455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP48_RS23470 PF13939 Toxin TisB, type I toxin-antitoxin system CP48_RS23475 PF07690 Major Facilitator Superfamily CP48_RS23485 PF02656 Domain of unknown function (DUF202) CP48_RS23490 PF02656 Domain of unknown function (DUF202) CP48_RS23500 PF16347 Domain of unknown function (DUF4976) CP48_RS23500 PF00884 Sulfatase CP48_RS23505 PF00474 Sodium:solute symporter family CP48_RS23510 PF02311 AraC-like ligand binding domain CP48_RS23510 PF12833 Helix-turn-helix domain CP48_RS23515 PF02056 Family 4 glycosyl hydrolase CP48_RS23515 PF11975 Family 4 glycosyl hydrolase C-terminal domain CP48_RS23520 PF00367 phosphotransferase system, EIIB CP48_RS23520 PF02378 Phosphotransferase system, EIIC CP48_RS23530 PF02080 TrkA-C domain CP48_RS23530 PF06826 Predicted Permease Membrane Region CP48_RS23535 PF00011 Hsp20/alpha crystallin family CP48_RS23540 PF00011 Hsp20/alpha crystallin family CP48_RS23545 PF07119 Protein of unknown function (DUF1375) CP48_RS23550 PF12566 Protein of unknown function (DUF3748) CP48_RS23550 PF07676 WD40-like Beta Propeller Repeat CP48_RS23555 PF01494 FAD binding domain CP48_RS23560 PF07690 Major Facilitator Superfamily CP48_RS23565 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CP48_RS23565 PF13378 Enolase C-terminal domain-like CP48_RS23570 PF01081 KDPG and KHG aldolase CP48_RS23575 PF05035 2-keto-3-deoxy-galactonokinase CP48_RS23580 PF00392 Bacterial regulatory proteins, gntR family CP48_RS23580 PF07729 FCD domain CP48_RS23595 PF06078 Bacterial protein of unknown function (DUF937) CP48_RS23605 PF01751 Toprim domain CP48_RS23605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS23605 PF18053 DNA gyrase B subunit insert domain CP48_RS23605 PF00986 DNA gyrase B subunit, carboxyl terminus CP48_RS23605 PF00204 DNA gyrase B CP48_RS23610 PF02463 RecF/RecN/SMC N terminal domain CP48_RS23615 PF02768 DNA polymerase III beta subunit, C-terminal domain CP48_RS23615 PF02767 DNA polymerase III beta subunit, central domain CP48_RS23615 PF00712 DNA polymerase III beta subunit, N-terminal domain CP48_RS23620 PF11638 DnaA N-terminal domain CP48_RS23620 PF00308 Bacterial dnaA protein CP48_RS23620 PF08299 Bacterial dnaA protein helix-turn-helix CP48_RS23625 PF00468 Ribosomal protein L34 CP48_RS23630 PF00825 Ribonuclease P CP48_RS23635 PF01809 Putative membrane protein insertion efficiency factor CP48_RS23640 PF14849 YidC periplasmic domain CP48_RS23640 PF02096 60Kd inner membrane protein CP48_RS23645 PF01926 50S ribosome-binding GTPase CP48_RS23645 PF12631 MnmE helical domain CP48_RS23645 PF10396 GTP-binding protein TrmE N-terminus CP48_RS23650 PF08053 Tryptophanase operon leader peptide CP48_RS23655 PF01212 Beta-eliminating lyase CP48_RS23660 PF03222 Tryptophan/tyrosine permease family CP48_RS23665 PF07690 Major Facilitator Superfamily CP48_RS23670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS23670 PF03466 LysR substrate binding domain CP48_RS23680 PF03358 NADPH-dependent FMN reductase CP48_RS23685 PF00860 Permease family CP48_RS23690 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS23700 PF03691 Uncharacterised protein family (UPF0167) CP48_RS23705 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CP48_RS23710 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CP48_RS23710 PF00756 Putative esterase CP48_RS23715 PF11471 Maltoporin periplasmic N-terminal extension CP48_RS23715 PF02264 LamB porin CP48_RS23720 PF02264 LamB porin CP48_RS23720 PF11471 Maltoporin periplasmic N-terminal extension CP48_RS23725 PF00232 Glycosyl hydrolase family 1 CP48_RS23730 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CP48_RS23730 PF00367 phosphotransferase system, EIIB CP48_RS23730 PF02378 Phosphotransferase system, EIIC CP48_RS23735 PF03123 CAT RNA binding domain CP48_RS23735 PF00874 PRD domain CP48_RS23740 PF01895 PhoU domain CP48_RS23745 PF00005 ABC transporter CP48_RS23750 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS23755 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS23760 PF12849 PBP superfamily domain CP48_RS23770 PF00577 Outer membrane usher protein CP48_RS23770 PF13954 PapC N-terminal domain CP48_RS23770 PF13953 PapC C-terminal domain CP48_RS23775 PF02753 Pili assembly chaperone PapD, C-terminal domain CP48_RS23775 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CP48_RS23780 PF00419 Fimbrial protein CP48_RS23785 PF01380 SIS domain CP48_RS23790 PF12804 MobA-like NTP transferase domain CP48_RS23790 PF14602 Hexapeptide repeat of succinyl-transferase CP48_RS23790 PF00132 Bacterial transferase hexapeptide (six repeats) CP48_RS23795 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CP48_RS23795 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CP48_RS23800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP48_RS23800 PF02874 ATP synthase alpha/beta family, beta-barrel domain CP48_RS23805 PF00231 ATP synthase CP48_RS23810 PF02874 ATP synthase alpha/beta family, beta-barrel domain CP48_RS23810 PF00306 ATP synthase alpha/beta chain, C terminal domain CP48_RS23810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP48_RS23815 PF00213 ATP synthase delta (OSCP) subunit CP48_RS23820 PF00430 ATP synthase B/B' CF(0) CP48_RS23825 PF00137 ATP synthase subunit C CP48_RS23830 PF00119 ATP synthase A chain CP48_RS23835 PF03899 ATP synthase I chain CP48_RS23840 PF02527 rRNA small subunit methyltransferase G CP48_RS23845 PF13932 GidA associated domain CP48_RS23845 PF01134 Glucose inhibited division protein A CP48_RS23850 PF00258 Flavodoxin CP48_RS23855 PF01037 Lrp/AsnC ligand binding domain CP48_RS23860 PF03590 Aspartate-ammonia ligase CP48_RS23865 PF05762 VWA domain containing CoxE-like protein CP48_RS23870 PF07728 AAA domain (dynein-related subfamily) CP48_RS23870 PF17868 AAA lid domain CP48_RS23870 PF12592 Protein of unknown function (DUF3763) CP48_RS23875 PF02705 K+ potassium transporter CP48_RS23880 PF05025 RbsD / FucU transport protein family CP48_RS23885 PF00005 ABC transporter CP48_RS23890 PF02653 Branched-chain amino acid transport system / permease component CP48_RS23895 PF13407 Periplasmic binding protein domain CP48_RS23900 PF00294 pfkB family carbohydrate kinase CP48_RS23905 PF00356 Bacterial regulatory proteins, lacI family CP48_RS23910 PF07690 Major Facilitator Superfamily CP48_RS23915 PF00392 Bacterial regulatory proteins, gntR family CP48_RS23915 PF07729 FCD domain CP48_RS23950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS23950 PF03466 LysR substrate binding domain CP48_RS23955 PF04219 Protein of unknown function, DUF CP48_RS23960 PF13335 Magnesium chelatase, subunit ChlI C-terminal CP48_RS23960 PF01078 Magnesium chelatase, subunit ChlI CP48_RS23965 PF08046 IlvGEDA operon leader peptide CP48_RS23970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CP48_RS23970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CP48_RS23970 PF00205 Thiamine pyrophosphate enzyme, central domain CP48_RS23980 PF01063 Amino-transferase class IV CP48_RS23985 PF00920 Dehydratase family CP48_RS23990 PF00585 C-terminal regulatory domain of Threonine dehydratase CP48_RS23990 PF00291 Pyridoxal-phosphate dependent enzyme CP48_RS23995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS23995 PF03466 LysR substrate binding domain CP48_RS24000 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CP48_RS24000 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CP48_RS24010 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CP48_RS24015 PF00580 UvrD/REP helicase N-terminal domain CP48_RS24015 PF13361 UvrD-like helicase C-terminal domain CP48_RS24020 PF02541 Ppx/GppA phosphatase family CP48_RS24025 PF00271 Helicase conserved C-terminal domain CP48_RS24025 PF00270 DEAD/DEAH box helicase CP48_RS24030 PF00085 Thioredoxin CP48_RS24040 PF07498 Rho termination factor, N-terminal domain CP48_RS24040 PF07497 Rho termination factor, RNA-binding domain CP48_RS24040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CP48_RS24050 PF00953 Glycosyl transferase family 4 CP48_RS24055 PF02706 Chain length determinant protein CP48_RS24060 PF02350 UDP-N-acetylglucosamine 2-epimerase CP48_RS24065 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CP48_RS24065 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CP48_RS24065 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CP48_RS24070 PF16363 GDP-mannose 4,6 dehydratase CP48_RS24075 PF00483 Nucleotidyl transferase CP48_RS24085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CP48_RS24090 PF01943 Polysaccharide biosynthesis protein CP48_RS24095 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 CP48_RS24100 PF06899 WzyE protein, O-antigen assembly polymerase CP48_RS24105 PF03808 Glycosyl transferase WecB/TagA/CpsF family CP48_RS24110 PF00324 Amino acid permease CP48_RS24135 PF04055 Radical SAM superfamily CP48_RS24135 PF13186 Iron-sulfur cluster-binding domain CP48_RS24140 PF00884 Sulfatase CP48_RS24145 PF07219 HemY protein N-terminus CP48_RS24145 PF07719 Tetratricopeptide repeat CP48_RS24150 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CP48_RS24155 PF02602 Uroporphyrinogen-III synthase HemD CP48_RS24160 PF03900 Porphobilinogen deaminase, C-terminal domain CP48_RS24160 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CP48_RS24165 PF12633 Adenylate cyclase NT domain CP48_RS24165 PF01295 Adenylate cyclase, class-I CP48_RS24170 PF01491 Frataxin-like domain CP48_RS24175 PF13627 Prokaryotic lipoprotein-attachment site CP48_RS24180 PF01678 Diaminopimelate epimerase CP48_RS24185 PF04340 Protein of unknown function, DUF484 CP48_RS24190 PF02899 Phage integrase, N-terminal SAM-like domain CP48_RS24190 PF00589 Phage integrase family CP48_RS24195 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS24200 PF13361 UvrD-like helicase C-terminal domain CP48_RS24200 PF00580 UvrD/REP helicase N-terminal domain CP48_RS24205 PF09992 Phosphodiester glycosidase CP48_RS24215 PF01544 CorA-like Mg2+ transporter protein CP48_RS24230 PF01544 CorA-like Mg2+ transporter protein CP48_RS24235 PF10947 Protein of unknown function (DUF2628) CP48_RS24250 PF03061 Thioesterase superfamily CP48_RS24255 PF02253 Phospholipase A1 CP48_RS24260 PF09382 RQC domain CP48_RS24260 PF00270 DEAD/DEAH box helicase CP48_RS24260 PF16124 RecQ zinc-binding CP48_RS24260 PF00271 Helicase conserved C-terminal domain CP48_RS24260 PF00570 HRDC domain CP48_RS24265 PF01810 LysE type translocator CP48_RS24270 PF01810 LysE type translocator CP48_RS24275 PF12146 Serine aminopeptidase, S33 CP48_RS24285 PF00892 EamA-like transporter family CP48_RS24290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS24290 PF03466 LysR substrate binding domain CP48_RS24295 PF01717 Cobalamin-independent synthase, Catalytic domain CP48_RS24295 PF08267 Cobalamin-independent synthase, N-terminal domain CP48_RS24300 PF01738 Dienelactone hydrolase family CP48_RS24305 PF01048 Phosphorylase superfamily CP48_RS24310 PF02646 RmuC family CP48_RS24315 PF01209 ubiE/COQ5 methyltransferase family CP48_RS24320 PF02036 SCP-2 sterol transfer family CP48_RS24325 PF03109 ABC1 family CP48_RS24330 PF02416 mttA/Hcf106 family CP48_RS24340 PF00902 Sec-independent protein translocase protein (TatC) CP48_RS24345 PF01026 TatD related DNase CP48_RS24350 PF02357 Transcription termination factor nusG CP48_RS24355 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CP48_RS24360 PF00970 Oxidoreductase FAD-binding domain CP48_RS24360 PF00175 Oxidoreductase NAD-binding domain CP48_RS24365 PF02803 Thiolase, C-terminal domain CP48_RS24365 PF00108 Thiolase, N-terminal domain CP48_RS24370 PF00378 Enoyl-CoA hydratase/isomerase CP48_RS24370 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CP48_RS24370 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CP48_RS24375 PF00557 Metallopeptidase family M24 CP48_RS24380 PF09186 Domain of unknown function (DUF1949) CP48_RS24380 PF01205 Uncharacterized protein family UPF0029 CP48_RS24385 PF02386 Cation transport protein CP48_RS24390 PF12724 Flavodoxin domain CP48_RS24420 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CP48_RS24425 PF12804 MobA-like NTP transferase domain CP48_RS24430 PF06288 Protein of unknown function (DUF1040) CP48_RS24435 PF01636 Phosphotransferase enzyme family CP48_RS24440 PF01323 DSBA-like thioredoxin domain CP48_RS24445 PF06097 Bacterial protein of unknown function (DUF945) CP48_RS24450 PF01553 Acyltransferase CP48_RS24465 PF01367 5'-3' exonuclease, C-terminal SAM fold CP48_RS24465 PF01612 3'-5' exonuclease CP48_RS24465 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CP48_RS24465 PF00476 DNA polymerase family A CP48_RS24470 PF01926 50S ribosome-binding GTPase CP48_RS24475 PF04220 Der GTPase activator (YihI) CP48_RS24480 PF04055 Radical SAM superfamily CP48_RS24480 PF06969 HemN C-terminal domain CP48_RS24490 PF00158 Sigma-54 interaction domain CP48_RS24490 PF00072 Response regulator receiver domain CP48_RS24490 PF02954 Bacterial regulatory protein, Fis family CP48_RS24495 PF00989 PAS fold CP48_RS24495 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS24495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS24500 PF00120 Glutamine synthetase, catalytic domain CP48_RS24500 PF03951 Glutamine synthetase, beta-Grasp domain CP48_RS24510 PF00679 Elongation factor G C-terminus CP48_RS24510 PF03144 Elongation factor Tu domain 2 CP48_RS24510 PF00009 Elongation factor Tu GTP binding domain CP48_RS24515 PF07702 UTRA domain CP48_RS24515 PF00392 Bacterial regulatory proteins, gntR family CP48_RS24520 PF01261 Xylose isomerase-like TIM barrel CP48_RS24525 PF07690 Major Facilitator Superfamily CP48_RS24530 PF06178 Oligogalacturonate-specific porin protein (KdgM) CP48_RS24545 PF01055 Glycosyl hydrolases family 31 CP48_RS24550 PF01263 Aldose 1-epimerase CP48_RS24560 PF01791 DeoC/LacD family aldolase CP48_RS24565 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CP48_RS24565 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CP48_RS24570 PF00294 pfkB family carbohydrate kinase CP48_RS24575 PF08220 DeoR-like helix-turn-helix domain CP48_RS24575 PF00455 DeoR C terminal sensor domain CP48_RS24580 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS24585 PF03631 Virulence factor BrkB CP48_RS24590 PF02580 D-Tyr-tRNA(Tyr) deacylase CP48_RS24595 PF00583 Acetyltransferase (GNAT) family CP48_RS24595 PF09500 Putative thioesterase (yiiD_Cterm) CP48_RS24600 PF01402 Ribbon-helix-helix protein, copG family CP48_RS24615 PF04216 Protein involved in formate dehydrogenase formation CP48_RS24620 PF01292 Prokaryotic cytochrome b561 CP48_RS24625 PF13247 4Fe-4S dicluster domain CP48_RS24625 PF09163 Formate dehydrogenase N, transmembrane CP48_RS24630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS24630 PF01568 Molydopterin dinucleotide binding domain CP48_RS24630 PF00384 Molybdopterin oxidoreductase CP48_RS24635 PF00384 Molybdopterin oxidoreductase CP48_RS24635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS24635 PF01568 Molydopterin dinucleotide binding domain CP48_RS24640 PF02634 FdhD/NarQ family CP48_RS24645 PF12889 Protein of unknown function (DUF3829) CP48_RS24650 PF08279 HTH domain CP48_RS24650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS24655 PF05343 M42 glutamyl aminopeptidase CP48_RS24660 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS24660 PF02378 Phosphotransferase system, EIIC CP48_RS24665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS24670 PF05336 L-rhamnose mutarotase CP48_RS24675 PF00596 Class II Aldolase and Adducin N-terminal domain CP48_RS24680 PF06134 L-rhamnose isomerase (RhaA) CP48_RS24685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CP48_RS24685 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CP48_RS24695 PF12833 Helix-turn-helix domain CP48_RS24695 PF02311 AraC-like ligand binding domain CP48_RS24705 PF06379 L-rhamnose-proton symport protein (RhaT) CP48_RS24710 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CP48_RS24710 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CP48_RS24725 PF03473 MOSC domain CP48_RS24725 PF03475 3-alpha domain CP48_RS24730 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS24730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS24730 PF00672 HAMP domain CP48_RS24730 PF16527 Two-component sensor protein CpxA, periplasmic domain CP48_RS24735 PF00072 Response regulator receiver domain CP48_RS24735 PF00486 Transcriptional regulatory protein, C terminal CP48_RS24740 PF07813 LTXXQ motif family protein CP48_RS24745 PF16916 Dimerisation domain of Zinc Transporter CP48_RS24745 PF01545 Cation efflux family CP48_RS24750 PF00365 Phosphofructokinase CP48_RS24760 PF02611 CDP-diacylglycerol pyrophosphatase CP48_RS24765 PF00121 Triosephosphate isomerase CP48_RS24770 PF07305 Protein of unknown function (DUF1454) CP48_RS24775 PF05656 Protein of unknown function (DUF805) CP48_RS24780 PF04175 Protein of unknown function (DUF406) CP48_RS24785 PF00582 Universal stress protein family CP48_RS24790 PF00175 Oxidoreductase NAD-binding domain CP48_RS24790 PF00970 Oxidoreductase FAD-binding domain CP48_RS24795 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CP48_RS24800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CP48_RS24800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CP48_RS24805 PF00230 Major intrinsic protein CP48_RS24810 PF06005 Cell division protein ZapB CP48_RS24815 PF03737 Aldolase/RraA CP48_RS24820 PF01040 UbiA prenyltransferase family CP48_RS24825 PF07724 AAA domain (Cdc48 subfamily) CP48_RS24825 PF00004 ATPase family associated with various cellular activities (AAA) CP48_RS24825 PF10431 C-terminal, D2-small domain, of ClpB protein CP48_RS24830 PF00227 Proteasome subunit CP48_RS24835 PF05036 Sporulation related domain CP48_RS24840 PF00356 Bacterial regulatory proteins, lacI family CP48_RS24845 PF00271 Helicase conserved C-terminal domain CP48_RS24845 PF17764 3′ DNA-binding domain (3′BD) CP48_RS24845 PF18074 Primosomal protein N C-terminal domain CP48_RS24845 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CP48_RS24845 PF00270 DEAD/DEAH box helicase CP48_RS24850 PF01197 Ribosomal protein L31 CP48_RS24855 PF15606 Bacterial toxin 34 CP48_RS24855 PF05593 RHS Repeat CP48_RS24855 PF03527 RHS protein CP48_RS24860 PF01609 Transposase DDE domain CP48_RS24865 PF05593 RHS Repeat CP48_RS24865 PF03527 RHS protein CP48_RS24865 PF14220 Domain of unknown function (DUF4329) CP48_RS24875 PF03400 IS1 transposase CP48_RS24880 PF03400 IS1 transposase CP48_RS24885 PF03811 InsA N-terminal domain CP48_RS24885 PF12759 InsA C-terminal domain CP48_RS24895 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family CP48_RS24900 PF01340 Met Apo-repressor, MetJ CP48_RS24905 PF01053 Cys/Met metabolism PLP-dependent enzyme CP48_RS24910 PF03447 Homoserine dehydrogenase, NAD binding domain CP48_RS24910 PF00742 Homoserine dehydrogenase CP48_RS24910 PF00696 Amino acid kinase family CP48_RS24920 PF02219 Methylenetetrahydrofolate reductase CP48_RS24925 PF00141 Peroxidase CP48_RS24930 PF00892 EamA-like transporter family CP48_RS24935 PF06940 Domain of unknown function (DUF1287) CP48_RS24945 PF00465 Iron-containing alcohol dehydrogenase CP48_RS24950 PF00923 Transaldolase/Fructose-6-phosphate aldolase CP48_RS24955 PF02896 PEP-utilising enzyme, TIM barrel domain CP48_RS24955 PF00391 PEP-utilising enzyme, mobile domain CP48_RS24955 PF00381 PTS HPr component phosphorylation site CP48_RS24955 PF05524 PEP-utilising enzyme, N-terminal CP48_RS24955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS24965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS24970 PF02901 Pyruvate formate lyase-like CP48_RS24970 PF01228 Glycine radical CP48_RS24975 PF04055 Radical SAM superfamily CP48_RS24980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS24985 PF12833 Helix-turn-helix domain CP48_RS24990 PF00884 Sulfatase CP48_RS24995 PF00311 Phosphoenolpyruvate carboxylase CP48_RS25000 PF07687 Peptidase dimerisation domain CP48_RS25000 PF01546 Peptidase family M20/M25/M40 CP48_RS25005 PF01118 Semialdehyde dehydrogenase, NAD binding domain CP48_RS25005 PF02774 Semialdehyde dehydrogenase, dimerisation domain CP48_RS25010 PF00696 Amino acid kinase family CP48_RS25015 PF14698 Argininosuccinate lyase C-terminal CP48_RS25015 PF00206 Lyase CP48_RS25020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS25020 PF03466 LysR substrate binding domain CP48_RS25025 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CP48_RS25025 PF07992 Pyridine nucleotide-disulphide oxidoreductase CP48_RS25030 PF00440 Bacterial regulatory proteins, tetR family CP48_RS25035 PF07226 Protein of unknown function (DUF1422) CP48_RS25040 PF05958 tRNA (Uracil-5-)-methyltransferase CP48_RS25045 PF07715 TonB-dependent Receptor Plug Domain CP48_RS25045 PF00593 TonB dependent receptor CP48_RS25050 PF01177 Asp/Glu/Hydantoin racemase CP48_RS25075 PF01565 FAD binding domain CP48_RS25075 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CP48_RS25080 PF02237 Biotin protein ligase C terminal domain CP48_RS25080 PF03099 Biotin/lipoate A/B protein ligase family CP48_RS25080 PF08279 HTH domain CP48_RS25085 PF00485 Phosphoribulokinase / Uridine kinase family CP48_RS25115 PF00009 Elongation factor Tu GTP binding domain CP48_RS25115 PF03144 Elongation factor Tu domain 2 CP48_RS25115 PF03143 Elongation factor Tu C-terminal domain CP48_RS25120 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CP48_RS25125 PF00467 KOW motif CP48_RS25125 PF02357 Transcription termination factor nusG CP48_RS25130 PF03946 Ribosomal protein L11, N-terminal domain CP48_RS25130 PF00298 Ribosomal protein L11, RNA binding domain CP48_RS25135 PF00687 Ribosomal protein L1p/L10e family CP48_RS25140 PF00466 Ribosomal protein L10 CP48_RS25145 PF00542 Ribosomal protein L7/L12 C-terminal domain CP48_RS25145 PF16320 Ribosomal protein L7/L12 dimerisation domain CP48_RS25150 PF04561 RNA polymerase Rpb2, domain 2 CP48_RS25150 PF04560 RNA polymerase Rpb2, domain 7 CP48_RS25150 PF04563 RNA polymerase beta subunit CP48_RS25150 PF00562 RNA polymerase Rpb2, domain 6 CP48_RS25150 PF10385 RNA polymerase beta subunit external 1 domain CP48_RS25150 PF04565 RNA polymerase Rpb2, domain 3 CP48_RS25155 PF04983 RNA polymerase Rpb1, domain 3 CP48_RS25155 PF05000 RNA polymerase Rpb1, domain 4 CP48_RS25155 PF00623 RNA polymerase Rpb1, domain 2 CP48_RS25155 PF04997 RNA polymerase Rpb1, domain 1 CP48_RS25155 PF04998 RNA polymerase Rpb1, domain 5 CP48_RS25165 PF06968 Biotin and Thiamin Synthesis associated domain CP48_RS25165 PF04055 Radical SAM superfamily CP48_RS25170 PF05690 Thiazole biosynthesis protein ThiG CP48_RS25175 PF02597 ThiS family CP48_RS25180 PF00899 ThiF family CP48_RS25185 PF02581 Thiamine monophosphate synthase CP48_RS25190 PF01964 Radical SAM ThiC family CP48_RS25190 PF13667 ThiC-associated domain CP48_RS25195 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CP48_RS25200 PF00293 NUDIX domain CP48_RS25200 PF09297 NADH pyrophosphatase zinc ribbon domain CP48_RS25205 PF01208 Uroporphyrinogen decarboxylase (URO-D) CP48_RS25210 PF04493 Endonuclease V CP48_RS25215 PF04222 Protein of unknown function (DUF416) CP48_RS25220 PF00216 Bacterial DNA-binding protein CP48_RS25225 PF07356 Protein of unknown function (DUF1481) CP48_RS25230 PF13801 Heavy-metal resistance CP48_RS25235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS25235 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS25240 PF00158 Sigma-54 interaction domain CP48_RS25240 PF02954 Bacterial regulatory protein, Fis family CP48_RS25240 PF00072 Response regulator receiver domain CP48_RS25245 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CP48_RS25245 PF02843 Phosphoribosylglycinamide synthetase, C domain CP48_RS25245 PF02844 Phosphoribosylglycinamide synthetase, N domain CP48_RS25250 PF01808 AICARFT/IMPCHase bienzyme CP48_RS25250 PF02142 MGS-like domain CP48_RS25280 PF13673 Acetyltransferase (GNAT) domain CP48_RS25285 PF04204 Homoserine O-succinyltransferase CP48_RS25290 PF01274 Malate synthase CP48_RS25295 PF00463 Isocitrate lyase family CP48_RS25300 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CP48_RS25305 PF07906 ShET2 enterotoxin, N-terminal region CP48_RS25310 PF07906 ShET2 enterotoxin, N-terminal region CP48_RS25315 PF01614 Bacterial transcriptional regulator CP48_RS25315 PF09339 IclR helix-turn-helix domain CP48_RS25320 PF02574 Homocysteine S-methyltransferase CP48_RS25320 PF00809 Pterin binding enzyme CP48_RS25320 PF02607 B12 binding domain CP48_RS25320 PF02310 B12 binding domain CP48_RS25320 PF02965 Vitamin B12 dependent methionine synthase, activation domain CP48_RS25325 PF02690 Na+/Pi-cotransporter CP48_RS25330 PF03575 Peptidase family S51 CP48_RS25335 PF01479 S4 domain CP48_RS25335 PF00849 RNA pseudouridylate synthase CP48_RS25340 PF11656 YjbD family (DUF3811) CP48_RS25345 PF00696 Amino acid kinase family CP48_RS25345 PF01842 ACT domain CP48_RS25350 PF00342 Phosphoglucose isomerase CP48_RS25355 PF11106 Exopolysaccharide production protein YjbE CP48_RS25360 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF CP48_RS25365 PF06251 Capsule biosynthesis GfcC CP48_RS25370 PF06082 Exopolysaccharide biosynthesis protein YbjH CP48_RS25375 PF17089 Uncharacterised protein family CP48_RS25385 PF06146 Phosphate-starvation-inducible E CP48_RS25390 PF00083 Sugar (and other) transporter CP48_RS25395 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS25400 PF14785 Maltose transport system permease protein MalF P2 domain CP48_RS25400 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS25405 PF01547 Bacterial extracellular solute-binding protein CP48_RS25415 PF17912 MalK OB fold domain CP48_RS25415 PF00005 ABC transporter CP48_RS25420 PF02264 LamB porin CP48_RS25425 PF07148 Maltose operon periplasmic protein precursor (MalM) CP48_RS25435 PF13599 Pentapeptide repeats (9 copies) CP48_RS25435 PF13981 SopA-like central domain CP48_RS25440 PF04345 Chorismate lyase CP48_RS25445 PF01040 UbiA prenyltransferase family CP48_RS25450 PF01553 Acyltransferase CP48_RS25455 PF01219 Prokaryotic diacylglycerol kinase CP48_RS25460 PF01726 LexA DNA binding domain CP48_RS25460 PF00717 Peptidase S24-like CP48_RS25465 PF01554 MatE CP48_RS25470 PF05532 CsbD-like CP48_RS25475 PF01475 Ferric uptake regulator family CP48_RS25485 PF10897 Protein of unknown function (DUF2713) CP48_RS25490 PF01207 Dihydrouridine synthase (Dus) CP48_RS25495 PF09583 Phage shock protein G (Phageshock_PspG) CP48_RS25500 PF00107 Zinc-binding dehydrogenase CP48_RS25500 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS25505 PF03796 DnaB-like helicase C terminal domain CP48_RS25505 PF00772 DnaB-like helicase N terminal domain CP48_RS25510 PF00842 Alanine racemase, C-terminal domain CP48_RS25510 PF01168 Alanine racemase, N-terminal domain CP48_RS25515 PF00155 Aminotransferase class I and II CP48_RS25525 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CP48_RS25530 PF01894 Uncharacterised protein family UPF0047 CP48_RS25535 PF04237 YjbR CP48_RS25540 PF00005 ABC transporter CP48_RS25540 PF17760 UvrA interaction domain CP48_RS25540 PF17755 UvrA DNA-binding domain CP48_RS25545 PF00436 Single-strand binding protein family CP48_RS25550 PF15940 Family of unknown function CP48_RS25555 PF00563 EAL domain CP48_RS25555 PF12792 CSS motif domain associated with EAL CP48_RS25560 PF12833 Helix-turn-helix domain CP48_RS25565 PF00376 MerR family regulatory protein CP48_RS25565 PF09278 MerR, DNA binding CP48_RS25570 PF00860 Permease family CP48_RS25575 PF00999 Sodium/hydrogen exchanger family CP48_RS25580 PF00805 Pentapeptide repeats (8 copies) CP48_RS25585 PF00474 Sodium:solute symporter family CP48_RS25590 PF04341 Protein of unknown function, DUF485 CP48_RS25595 PF00501 AMP-binding enzyme CP48_RS25595 PF13193 AMP-binding enzyme C-terminal domain CP48_RS25595 PF16177 Acetyl-coenzyme A synthetase N-terminus CP48_RS25600 PF02335 Cytochrome c552 CP48_RS25605 PF13435 Cytochrome c554 and c-prime CP48_RS25605 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CP48_RS25610 PF00037 4Fe-4S binding domain CP48_RS25610 PF13247 4Fe-4S dicluster domain CP48_RS25615 PF03916 Polysulphide reductase, NrfD CP48_RS25620 PF01578 Cytochrome C assembly protein CP48_RS25620 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CP48_RS25625 PF03918 Cytochrome C biogenesis protein CP48_RS25635 PF00375 Sodium:dicarboxylate symporter family CP48_RS25640 PF08238 Sel1 repeat CP48_RS25645 PF00384 Molybdopterin oxidoreductase CP48_RS25645 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS25645 PF01568 Molydopterin dinucleotide binding domain CP48_RS25650 PF00384 Molybdopterin oxidoreductase CP48_RS25650 PF01568 Molydopterin dinucleotide binding domain CP48_RS25650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS25655 PF02321 Outer membrane efflux protein CP48_RS25660 PF04632 Fusaric acid resistance protein family CP48_RS25665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CP48_RS25665 PF00529 HlyD membrane-fusion protein of T1SS CP48_RS25670 PF17090 Uncharacterised protein family CP48_RS25675 PF14864 Alkyl sulfatase C-terminal CP48_RS25675 PF00753 Metallo-beta-lactamase superfamily CP48_RS25675 PF14863 Alkyl sulfatase dimerisation CP48_RS25680 PF02502 Ribose/Galactose Isomerase CP48_RS25690 PF12706 Beta-lactamase superfamily domain CP48_RS25695 PF00583 Acetyltransferase (GNAT) family CP48_RS25705 PF07969 Amidohydrolase family CP48_RS25710 PF00005 ABC transporter CP48_RS25715 PF00005 ABC transporter CP48_RS25720 PF06007 Phosphonate metabolism protein PhnJ CP48_RS25725 PF05861 Bacterial phosphonate metabolism protein (PhnI) CP48_RS25730 PF05845 Bacterial phosphonate metabolism protein (PhnH) CP48_RS25735 PF06754 Phosphonate metabolism protein PhnG CP48_RS25740 PF07702 UTRA domain CP48_RS25740 PF00392 Bacterial regulatory proteins, gntR family CP48_RS25745 PF00528 Binding-protein-dependent transport system inner membrane component CP48_RS25755 PF00005 ABC transporter CP48_RS25760 PF06983 3-demethylubiquinone-9 3-methyltransferase CP48_RS25765 PF03831 PhnA domain CP48_RS25765 PF08274 PhnA Zinc-Ribbon CP48_RS25770 PF00350 Dynamin family CP48_RS25775 PF13990 YjcZ-like protein CP48_RS25780 PF08946 Osmosensory transporter coiled coil CP48_RS25780 PF00083 Sugar (and other) transporter CP48_RS25790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS25790 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS25795 PF00486 Transcriptional regulatory protein, C terminal CP48_RS25795 PF00072 Response regulator receiver domain CP48_RS25800 PF00884 Sulfatase CP48_RS25800 PF08019 Phosphoethanolamine transferase EptA/EptB CP48_RS25805 PF13520 Amino acid permease CP48_RS25810 PF12833 Helix-turn-helix domain CP48_RS25815 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CP48_RS25815 PF01276 Orn/Lys/Arg decarboxylase, major domain CP48_RS25815 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CP48_RS25820 PF12833 Helix-turn-helix domain CP48_RS25830 PF11975 Family 4 glycosyl hydrolase C-terminal domain CP48_RS25830 PF02056 Family 4 glycosyl hydrolase CP48_RS25840 PF09997 Predicted membrane protein (DUF2238) CP48_RS25845 PF05683 Fumarase C-terminus CP48_RS25845 PF05681 Fumarate hydratase (Fumerase) CP48_RS25850 PF03605 Anaerobic c4-dicarboxylate membrane transporter CP48_RS25860 PF00072 Response regulator receiver domain CP48_RS25865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS25865 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CP48_RS25865 PF17203 Single cache domain 3 CP48_RS25865 PF00989 PAS fold CP48_RS25870 PF06902 Divergent 4Fe-4S mono-cluster CP48_RS25875 PF14542 GCN5-related N-acetyl-transferase CP48_RS25880 PF11080 Endoribonuclease GhoS CP48_RS25885 PF10753 Toxin GhoT_OrtT CP48_RS25890 PF01336 OB-fold nucleic acid binding domain CP48_RS25890 PF00152 tRNA synthetases class II (D, K and N) CP48_RS25895 PF00854 POT family CP48_RS25900 PF01276 Orn/Lys/Arg decarboxylase, major domain CP48_RS25900 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CP48_RS25900 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CP48_RS25905 PF13520 Amino acid permease CP48_RS25910 PF00486 Transcriptional regulatory protein, C terminal CP48_RS25910 PF18500 CadC C-terminal domain 1 CP48_RS25930 PF02683 Cytochrome C biogenesis protein transmembrane region CP48_RS25930 PF11412 Disulphide bond corrector protein DsbC CP48_RS25935 PF03091 CutA1 divalent ion tolerance protein CP48_RS25940 PF03605 Anaerobic c4-dicarboxylate membrane transporter CP48_RS25945 PF10415 Fumarase C C-terminus CP48_RS25945 PF00206 Lyase CP48_RS25950 PF04186 FxsA cytoplasmic membrane protein CP48_RS25955 PF13520 Amino acid permease CP48_RS25960 PF00166 Chaperonin 10 Kd subunit CP48_RS25965 PF00118 TCP-1/cpn60 chaperonin family CP48_RS25970 PF13698 Domain of unknown function (DUF4156) CP48_RS25975 PF15922 YjeJ-like CP48_RS25980 PF04055 Radical SAM superfamily CP48_RS25985 PF01132 Elongation factor P (EF-P) OB domain CP48_RS25985 PF09285 Elongation factor P, C-terminal CP48_RS25985 PF08207 Elongation factor P (EF-P) KOW-like domain CP48_RS25990 PF08085 Entericidin EcnA/B family CP48_RS25995 PF08085 Entericidin EcnA/B family CP48_RS26000 PF00893 Small Multidrug Resistance protein CP48_RS26005 PF08212 Lipocalin-like domain CP48_RS26010 PF00144 Beta-lactamase CP48_RS26015 PF02313 Fumarate reductase subunit D CP48_RS26020 PF02300 Fumarate reductase subunit C CP48_RS26025 PF13085 2Fe-2S iron-sulfur cluster binding domain CP48_RS26025 PF13183 4Fe-4S dicluster domain CP48_RS26030 PF02910 Fumarate reductase flavoprotein C-term CP48_RS26030 PF00890 FAD binding domain CP48_RS26035 PF00152 tRNA synthetases class II (D, K and N) CP48_RS26040 PF13520 Amino acid permease CP48_RS26045 PF12795 Mechanosensitive ion channel porin domain CP48_RS26045 PF12794 Mechanosensitive ion channel inner membrane domain 1 CP48_RS26045 PF00924 Mechanosensitive ion channel CP48_RS26050 PF02666 Phosphatidylserine decarboxylase CP48_RS26055 PF03193 RsgA GTPase CP48_RS26060 PF00929 Exonuclease CP48_RS26080 PF08331 Domain of unknown function (DUF1730) CP48_RS26085 PF01256 Carbohydrate kinase CP48_RS26085 PF03853 YjeF-related protein N-terminus CP48_RS26090 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CP48_RS26095 PF01520 N-acetylmuramoyl-L-alanine amidase CP48_RS26100 PF01119 DNA mismatch repair protein, C-terminal domain CP48_RS26100 PF08676 MutL C terminal dimerisation domain CP48_RS26110 PF17209 Hfq protein CP48_RS26115 PF01926 50S ribosome-binding GTPase CP48_RS26115 PF13167 GTP-binding GTPase N-terminal CP48_RS26115 PF16360 GTP-binding GTPase Middle Region CP48_RS26125 PF01145 SPFH domain / Band 7 family CP48_RS26130 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CP48_RS26135 PF00709 Adenylosuccinate synthetase CP48_RS26140 PF02082 Transcriptional regulator CP48_RS26145 PF00575 S1 RNA binding domain CP48_RS26145 PF08461 Ribonuclease R winged-helix domain CP48_RS26145 PF08206 Ribonuclease B OB domain CP48_RS26145 PF17876 Cold shock domain CP48_RS26145 PF00773 RNB domain CP48_RS26150 PF00588 SpoU rRNA Methylase family CP48_RS26150 PF08032 RNA 2'-O ribose methyltransferase substrate binding CP48_RS26155 PF01614 Bacterial transcriptional regulator CP48_RS26155 PF09339 IclR helix-turn-helix domain CP48_RS26160 PF00701 Dihydrodipicolinate synthetase family CP48_RS26165 PF07690 Major Facilitator Superfamily CP48_RS26170 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CP48_RS26170 PF08666 SAF domain CP48_RS26175 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) CP48_RS26180 PF04012 PspA/IM30 family CP48_RS26185 PF10679 Protein of unknown function (DUF2491) CP48_RS26190 PF03994 Domain of Unknown Function (DUF350) CP48_RS26195 PF06693 Protein of unknown function (DUF1190) CP48_RS26200 PF03738 Glutathionylspermidine synthase preATP-grasp CP48_RS26205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CP48_RS26205 PF02770 Acyl-CoA dehydrogenase, middle domain CP48_RS26205 PF18158 Adaptive response protein AidB N-terminal domain CP48_RS26210 PF07338 Protein of unknown function (DUF1471) CP48_RS26215 PF07338 Protein of unknown function (DUF1471) CP48_RS26220 PF00326 Prolyl oligopeptidase family CP48_RS26225 PF08220 DeoR-like helix-turn-helix domain CP48_RS26225 PF00455 DeoR C terminal sensor domain CP48_RS26235 PF03611 PTS system sugar-specific permease component CP48_RS26240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CP48_RS26245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CP48_RS26250 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CP48_RS26255 PF01261 Xylose isomerase-like TIM barrel CP48_RS26260 PF00596 Class II Aldolase and Adducin N-terminal domain CP48_RS26265 PF07338 Protein of unknown function (DUF1471) CP48_RS26275 PF01250 Ribosomal protein S6 CP48_RS26280 PF00436 Single-strand binding protein family CP48_RS26285 PF01084 Ribosomal protein S18 CP48_RS26290 PF01281 Ribosomal protein L9, N-terminal domain CP48_RS26290 PF03948 Ribosomal protein L9, C-terminal domain CP48_RS26295 PF03480 Bacterial extracellular solute-binding protein, family 7 CP48_RS26300 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CP48_RS26305 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CP48_RS26310 PF02910 Fumarate reductase flavoprotein C-term CP48_RS26310 PF00890 FAD binding domain CP48_RS26315 PF01144 Coenzyme A transferase CP48_RS26320 PF00378 Enoyl-CoA hydratase/isomerase CP48_RS26335 PF17938 Tetracyclin repressor-like, C-terminal domain CP48_RS26340 PF04225 Opacity-associated protein A LysM-like domain CP48_RS26340 PF08525 Opacity-associated protein A N-terminal motif CP48_RS26345 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CP48_RS26345 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CP48_RS26350 PF00324 Amino acid permease CP48_RS26355 PF04405 Domain of Unknown function (DUF542) CP48_RS26355 PF01814 Hemerythrin HHE cation binding domain CP48_RS26360 PF00892 EamA-like transporter family CP48_RS26365 PF05368 NmrA-like family CP48_RS26370 PF01638 HxlR-like helix-turn-helix CP48_RS26375 PF02872 5'-nucleotidase, C-terminal domain CP48_RS26375 PF00149 Calcineurin-like phosphoesterase CP48_RS26380 PF00459 Inositol monophosphatase family CP48_RS26385 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CP48_RS26390 PF06526 Protein of unknown function (DUF1107) CP48_RS26395 PF00571 CBS domain CP48_RS26395 PF03471 Transporter associated domain CP48_RS26395 PF01595 Cyclin M transmembrane N-terminal domain CP48_RS26400 PF01625 Peptide methionine sulfoxide reductase CP48_RS26410 PF01103 Surface antigen CP48_RS26410 PF07244 Surface antigen variable number repeat CP48_RS26410 PF17243 POTRA domain TamA domain 1 CP48_RS26415 PF04357 TamB, inner membrane protein subunit of TAM complex CP48_RS26420 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CP48_RS26425 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CP48_RS26430 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CP48_RS26435 PF00719 Inorganic pyrophosphatase CP48_RS26440 PF13407 Periplasmic binding protein domain CP48_RS26445 PF00005 ABC transporter CP48_RS26450 PF02653 Branched-chain amino acid transport system / permease component CP48_RS26455 PF02653 Branched-chain amino acid transport system / permease component CP48_RS26460 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CP48_RS26465 PF02875 Mur ligase family, glutamate ligase domain CP48_RS26465 PF08245 Mur ligase middle domain CP48_RS26465 PF01225 Mur ligase family, catalytic domain CP48_RS26470 PF04751 Protein of unknown function (DUF615) CP48_RS26475 PF01523 Putative modulator of DNA gyrase CP48_RS26480 PF07361 Cytochrome b562 CP48_RS26490 PF13597 Anaerobic ribonucleoside-triphosphate reductase CP48_RS26490 PF03477 ATP cone domain CP48_RS26495 PF11941 Domain of unknown function (DUF3459) CP48_RS26495 PF00128 Alpha amylase, catalytic domain CP48_RS26500 PF02378 Phosphotransferase system, EIIC CP48_RS26500 PF00367 phosphotransferase system, EIIB CP48_RS26505 PF00356 Bacterial regulatory proteins, lacI family CP48_RS26510 PF00690 Cation transporter/ATPase, N-terminus CP48_RS26510 PF00689 Cation transporting ATPase, C-terminus CP48_RS26515 PF01042 Endoribonuclease L-PSP CP48_RS26520 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CP48_RS26520 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CP48_RS26525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CP48_RS26525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CP48_RS26530 PF08052 PyrBI operon leader peptide CP48_RS26540 PF01042 Endoribonuclease L-PSP CP48_RS26550 PF00440 Bacterial regulatory proteins, tetR family CP48_RS26555 PF04074 YhcH/YjgK/YiaL CP48_RS26565 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CP48_RS26565 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CP48_RS26570 PF06877 Regulator of ribonuclease activity B CP48_RS26575 PF00583 Acetyltransferase (GNAT) family CP48_RS26580 PF05987 Bacterial protein of unknown function (DUF898) CP48_RS26585 PF10458 Valyl tRNA synthetase tRNA binding arm CP48_RS26585 PF08264 Anticodon-binding domain of tRNA CP48_RS26585 PF00133 tRNA synthetases class I (I, L, M and V) CP48_RS26590 PF04364 DNA polymerase III chi subunit, HolC CP48_RS26595 PF00883 Cytosol aminopeptidase family, catalytic domain CP48_RS26595 PF02789 Cytosol aminopeptidase family, N-terminal domain CP48_RS26600 PF03739 Lipopolysaccharide export system permease LptF/LptG CP48_RS26605 PF03739 Lipopolysaccharide export system permease LptF/LptG CP48_RS26610 PF05872 Bacterial protein of unknown function (DUF853) CP48_RS26615 PF05872 Bacterial protein of unknown function (DUF853) CP48_RS26620 PF00356 Bacterial regulatory proteins, lacI family CP48_RS26625 PF02447 GntP family permease CP48_RS26630 PF00106 short chain dehydrogenase CP48_RS26635 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS26635 PF00107 Zinc-binding dehydrogenase CP48_RS26640 PF01202 Shikimate kinase CP48_RS26645 PF00107 Zinc-binding dehydrogenase CP48_RS26645 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS26655 PF13356 Arm DNA-binding domain CP48_RS26655 PF00589 Phage integrase family CP48_RS26665 PF00884 Sulfatase CP48_RS26685 PF01609 Transposase DDE domain CP48_RS26685 PF13006 Insertion element 4 transposase N-terminal CP48_RS26695 PF07690 Major Facilitator Superfamily CP48_RS26700 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CP48_RS26700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CP48_RS26705 PF16747 Surface-adhesin protein E CP48_RS26710 PF11700 Vacuole effluxer Atg22 like CP48_RS26715 PF03400 IS1 transposase CP48_RS26720 PF13953 PapC C-terminal domain CP48_RS26720 PF13954 PapC N-terminal domain CP48_RS26720 PF00577 Outer membrane usher protein CP48_RS26725 PF00419 Fimbrial protein CP48_RS26740 PF02447 GntP family permease CP48_RS26750 PF03786 D-mannonate dehydratase (UxuA) CP48_RS26755 PF01232 Mannitol dehydrogenase Rossmann domain CP48_RS26755 PF08125 Mannitol dehydrogenase C-terminal domain CP48_RS26765 PF07729 FCD domain CP48_RS26765 PF00392 Bacterial regulatory proteins, gntR family CP48_RS26770 PF10887 Protein of unknown function (DUF2686) CP48_RS26785 PF04965 Gene 25-like lysozyme CP48_RS26790 PF03466 LysR substrate binding domain CP48_RS26790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CP48_RS26795 PF01979 Amidohydrolase family CP48_RS26800 PF07670 Nucleoside recognition CP48_RS26805 PF07670 Nucleoside recognition CP48_RS26810 PF01609 Transposase DDE domain CP48_RS26815 PF07670 Nucleoside recognition CP48_RS26820 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family CP48_RS26825 PF06779 Uncharacterised MFS-type transporter YbfB CP48_RS26830 PF06977 SdiA-regulated CP48_RS26840 PF01869 BadF/BadG/BcrA/BcrD ATPase family CP48_RS26845 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CP48_RS26855 PF07690 Major Facilitator Superfamily CP48_RS26860 PF04754 Putative transposase, YhgA-like CP48_RS26865 PF00392 Bacterial regulatory proteins, gntR family CP48_RS26865 PF00155 Aminotransferase class I and II CP48_RS26870 PF06568 Domain of unknown function (DUF1127) CP48_RS26880 PF01609 Transposase DDE domain CP48_RS26890 PF08845 Toxin SymE, type I toxin-antitoxin system CP48_RS26895 PF11867 Domain of unknown function (DUF3387) CP48_RS26895 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CP48_RS26895 PF18766 SWI2/SNF2 ATPase CP48_RS26900 PF01420 Type I restriction modification DNA specificity domain CP48_RS26905 PF02384 N-6 DNA Methylase CP48_RS26910 PF14338 Mrr N-terminal domain CP48_RS26910 PF04471 Restriction endonuclease CP48_RS26925 PF07683 Cobalamin synthesis protein cobW C-terminal domain CP48_RS26925 PF02492 CobW/HypB/UreG, nucleotide-binding domain CP48_RS26930 PF04328 Selenoprotein, putative CP48_RS26935 PF13722 5TM C-terminal transporter carbon starvation CstA CP48_RS26935 PF02554 Carbon starvation protein CstA CP48_RS26945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CP48_RS26945 PF02203 Tar ligand binding domain homologue CP48_RS26945 PF00672 HAMP domain CP48_RS26950 PF07690 Major Facilitator Superfamily CP48_RS26955 PF07729 FCD domain CP48_RS26955 PF00392 Bacterial regulatory proteins, gntR family CP48_RS26960 PF08240 Alcohol dehydrogenase GroES-like domain CP48_RS26960 PF00107 Zinc-binding dehydrogenase CP48_RS26965 PF00884 Sulfatase CP48_RS26970 PF10696 Protein of unknown function (DUF2501) CP48_RS26975 PF01695 IstB-like ATP binding protein CP48_RS26980 PF17948 DnaT DNA-binding domain CP48_RS26985 PF12821 Threonine/Serine exporter, ThrE CP48_RS26990 PF06738 Putative threonine/serine exporter CP48_RS26995 PF00196 Bacterial regulatory proteins, luxR family CP48_RS27000 PF00196 Bacterial regulatory proteins, luxR family CP48_RS27005 PF06276 Ferric iron reductase FhuF-like transporter CP48_RS27005 PF11575 FhuF 2Fe-2S C-terminal domain CP48_RS27010 PF07256 Protein of unknown function (DUF1435) CP48_RS27035 PF08468 Methyltransferase small domain N-terminal CP48_RS27035 PF05175 Methyltransferase small domain CP48_RS27040 PF03603 DNA polymerase III psi subunit CP48_RS27045 PF00583 Acetyltransferase (GNAT) family CP48_RS27050 PF13419 Haloacid dehalogenase-like hydrolase CP48_RS27060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CP48_RS27070 PF03400 IS1 transposase CP48_RS27095 PF10065 Uncharacterized conserved protein (DUF2303) CP48_RS27110 PF00717 Peptidase S24-like CP48_RS27115 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT CP48_RS27125 PF10549 ORF11CD3 domain CP48_RS27125 PF09669 Phage regulatory protein Rha (Phage_pRha) CP48_RS27145 PF03335 Phage tail fibre repeat CP48_RS27145 PF07484 Phage Tail Collar Domain CP48_RS27145 PF08400 Prophage tail fibre N-terminal CP48_RS27155 PF07484 Phage Tail Collar Domain CP48_RS27155 PF03335 Phage tail fibre repeat CP48_RS27155 PF08400 Prophage tail fibre N-terminal CP48_RS27195 PF13276 HTH-like domain CP48_RS27195 PF00665 Integrase core domain CP48_RS27195 PF01527 Transposase CP48_RS27200 PF05717 IS66 Orf2 like protein CP48_RS27205 PF13005 zinc-finger binding domain of transposase IS66 CP48_RS27205 PF13817 IS66 C-terminal element CP48_RS27205 PF03050 Transposase IS66 family CP48_RS27205 PF13007 Transposase C of IS166 homeodomain CP48_RS27250 PF10124 Mu-like prophage major head subunit gpT CP48_RS27275 PF06074 Protein of unknown function (DUF935) CP48_RS27285 PF01555 DNA methylase CP48_RS27390 PF13401 AAA domain CP48_RS27390 PF09077 Mu B transposition protein, C terminal CP48_RS27415 PF06069 PerC transcriptional activator CP48_RS27420 PF01726 LexA DNA binding domain CP48_RS27420 PF00717 Peptidase S24-like CP48_RS27425 PF05866 Endodeoxyribonuclease RusA CP48_RS27440 PF06147 Protein of unknown function (DUF968) CP48_RS27445 PF05866 Endodeoxyribonuclease RusA CP48_RS27450 PF03589 Antitermination protein CP48_RS27465 PF01555 DNA methylase CP48_RS27490 PF04971 Bacteriophage P21 holin S CP48_RS27505 PF00959 Phage lysozyme CP48_RS27520 PF03245 Bacteriophage Rz lysis protein CP48_RS27530 PF13132 Domain of unknown function (DUF3950) CP48_RS27535 PF07471 Phage DNA packaging protein Nu1 CP48_RS27540 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CP48_RS27545 PF02831 gpW CP48_RS27555 PF01343 Peptidase family S49 CP48_RS27565 PF03864 Phage major capsid protein E CP48_RS27635 PF06316 Enterobacterial Ail/Lom protein CP48_RS27640 PF08400 Prophage tail fibre N-terminal CP48_RS27640 PF07484 Phage Tail Collar Domain CP48_RS27640 PF03335 Phage tail fibre repeat CP48_RS27650 PF06183 DinI-like family CP48_RS27655 PF03144 Elongation factor Tu domain 2 CP48_RS27655 PF16658 Class II release factor RF3, C-terminal domain CP48_RS27655 PF00009 Elongation factor Tu GTP binding domain CP48_RS27660 PF04972 BON domain CP48_RS27665 PF07043 Protein of unknown function (DUF1328) CP48_RS27670 PF01734 Patatin-like phospholipase CP48_RS27675 PF01026 TatD related DNase CP48_RS27680 PF04055 Radical SAM superfamily CP48_RS27685 PF11230 Protein of unknown function (DUF3029) CP48_RS27695 PF01791 DeoC/LacD family aldolase CP48_RS27700 PF00591 Glycosyl transferase family, a/b domain CP48_RS27700 PF02885 Glycosyl transferase family, helical bundle domain CP48_RS27700 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CP48_RS27705 PF01676 Metalloenzyme superfamily CP48_RS27710 PF01048 Phosphorylase superfamily CP48_RS27715 PF07804 HipA-like C-terminal domain CP48_RS27720 PF10437 Bacterial lipoate protein ligase C-terminus CP48_RS27720 PF03099 Biotin/lipoate A/B protein ligase family CP48_RS27725 PF10144 Bacterial virulence factor haemolysin CP48_RS27730 PF18429 Domain of unknown function (DUF5609) CP48_RS27735 PF18073 Rubredoxin metal binding domain CP48_RS27740 PF13521 AAA domain CP48_RS27740 PF01381 Helix-turn-helix CP48_RS27750 PF12848 ABC transporter CP48_RS27750 PF00005 ABC transporter CP48_RS27755 PF01464 Transglycosylase SLT domain CP48_RS27755 PF14718 Soluble lytic murein transglycosylase L domain CP48_RS27760 PF01371 Trp repressor protein CP48_RS27765 PF01931 Protein of unknown function DUF84 CP48_RS27770 PF00300 Histidine phosphatase superfamily (branch 1) CP48_RS27775 PF12833 Helix-turn-helix domain CP48_RS27775 PF06445 GyrI-like small molecule binding domain CP48_RS27780 PF05981 CreA protein CP48_RS27785 PF00486 Transcriptional regulatory protein, C terminal CP48_RS27785 PF00072 Response regulator receiver domain CP48_RS27790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CP48_RS27790 PF00512 His Kinase A (phospho-acceptor) domain CP48_RS27790 PF00672 HAMP domain CP48_RS27795 PF06123 Inner membrane protein CreD CP48_RS27800 PF00072 Response regulator receiver domain CP48_RS27800 PF00486 Transcriptional regulatory protein, C terminal CP48_RS27810 PF00588 SpoU rRNA Methylase family