CP48_RS01475 SM00852 Probable molybdopterin binding domain CP48_RS01500 SM00271 DnaJ molecular chaperone homology domain CP48_RS01550 SM00904 Riboflavin kinase CP48_RS01595 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CP48_RS01600 SM00851 MGS-like domain CP48_RS01600 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CP48_RS01645 SM00893 Electron transfer flavoprotein domain CP48_RS01650 SM00893 Electron transfer flavoprotein domain CP48_RS01695 SM00650 Ribosomal RNA adenine dimethylases CP48_RS01715 SM00271 DnaJ molecular chaperone homology domain CP48_RS01725 SM00487 DEAD-like helicases superfamily CP48_RS01725 SM00490 helicase superfamily c-terminal domain CP48_RS01730 SM00486 DNA polymerase type-B family CP48_RS01735 SM01007 Class II Aldolase and Adducin N-terminal domain CP48_RS01750 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS01760 SM00382 ATPases associated with a variety of cellular activities CP48_RS01800 SM01329 CP48_RS01800 CP48_RS01805 SM00917 LeuA allosteric (dimerisation) domain CP48_RS01835 SM00354 helix_turn _helix lactose operon repressor CP48_RS01905 SM00842 Cell division protein FtsA CP48_RS01910 SM00864 Tubulin/FtsZ family, GTPase domain CP48_RS01910 SM00865 Tubulin/FtsZ family, C-terminal domain CP48_RS01925 SM00957 SecA DEAD-like domain CP48_RS01925 SM00958 SecA preprotein cross-linking domain CP48_RS01955 SM01240 CP48_RS01955 CP48_RS01985 SM00644 CP48_RS01985 CP48_RS02000 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS02000 SM00895 CP48_RS02000 CP48_RS02055 SM00564 beta-propeller repeat CP48_RS02065 SM00947 Carbonic anhydrase CP48_RS02070 SM00382 ATPases associated with a variety of cellular activities CP48_RS02175 SM00487 DEAD-like helicases superfamily CP48_RS02175 SM00490 helicase superfamily c-terminal domain CP48_RS02175 SM00847 Helicase associated domain (HA2) Add an annotation CP48_RS02195 SM00382 ATPases associated with a variety of cellular activities CP48_RS02240 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CP48_RS02245 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CP48_RS02270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CP48_RS02315 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CP48_RS02325 SM00935 Outer membrane protein (OmpH-like) CP48_RS02355 SM00481 DNA polymerase alpha chain like domain CP48_RS02375 SM00977 TilS substrate C-terminal domain CP48_RS02390 SM01322 CP48_RS02390 CP48_RS02435 SM00382 ATPases associated with a variety of cellular activities CP48_RS02435 SM00930 CP48_RS02435 CP48_RS02495 SM00257 Lysin motif CP48_RS02500 SM00849 Metallo-beta-lactamase superfamily CP48_RS02515 SM00479 CP48_RS02515 CP48_RS02590 SM01321 CP48_RS02590 CP48_RS02655 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CP48_RS02700 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS02745 SM01252 CP48_RS02745 CP48_RS02755 SM00507 HNH nucleases CP48_RS02890 SM00635 Bacterial Ig-like domain 2 CP48_RS02965 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS03000 SM00857 Resolvase, N terminal domain CP48_RS03090 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CP48_RS03095 SM01092 CO dehydrogenase flavoprotein C-terminal domain CP48_RS03140 SM00421 helix_turn_helix, Lux Regulon CP48_RS03180 SM00634 Bacterial Ig-like domain (group 1) CP48_RS03205 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS03255 SM00052 Putative diguanylate phosphodiesterase CP48_RS03255 SM00421 helix_turn_helix, Lux Regulon CP48_RS03270 SM00248 ankyrin repeats CP48_RS03305 SM00829 Enoylreductase CP48_RS03330 SM00382 ATPases associated with a variety of cellular activities CP48_RS03370 SM00947 Carbonic anhydrase CP48_RS03375 SM01116 CP48_RS03375 CP48_RS03385 SM01266 CP48_RS03385 CP48_RS03395 SM01038 Beta galactosidase small chain CP48_RS03405 SM00346 helix_turn_helix isocitrate lyase regulation CP48_RS03430 SM00859 Semialdehyde dehydrogenase, NAD binding domain CP48_RS03455 SM00829 Enoylreductase CP48_RS03495 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS03500 SM00382 ATPases associated with a variety of cellular activities CP48_RS03515 SM01004 Delta-aminolevulinic acid dehydratase CP48_RS03520 SM00869 Autotransporter beta-domain CP48_RS03575 SM00098 Alkaline phosphatase homologues CP48_RS03585 SM00267 diguanylate cyclase CP48_RS03655 SM00448 cheY-homologous receiver domain CP48_RS03655 SM00862 Transcriptional regulatory protein, C terminal CP48_RS03660 SM00091 PAS domain CP48_RS03660 SM00387 Histidine kinase-like ATPases CP48_RS03660 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS03675 SM00642 Alpha-amylase domain CP48_RS03695 SM01323 CP48_RS03695 CP48_RS03710 SM00507 HNH nucleases CP48_RS03765 SM00861 Transketolase, pyrimidine binding domain CP48_RS03780 SM00981 CP48_RS03780 CP48_RS03860 SM00382 ATPases associated with a variety of cellular activities CP48_RS03860 SM00994 ClpX C4-type zinc finger CP48_RS03860 SM01086 C-terminal, D2-small domain, of ClpB protein CP48_RS03865 SM00382 ATPases associated with a variety of cellular activities CP48_RS03865 SM00464 Found in ATP-dependent protease La (LON) CP48_RS03870 SM00411 bacterial (prokaryotic) histone like domain CP48_RS03880 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CP48_RS03905 SM00344 helix_turn_helix ASNC type CP48_RS03910 SM00382 ATPases associated with a variety of cellular activities CP48_RS03915 SM00382 ATPases associated with a variety of cellular activities CP48_RS03920 SM00938 Nitrogen regulatory protein P-II CP48_RS03955 SM00052 Putative diguanylate phosphodiesterase CP48_RS03965 SM01266 CP48_RS03965 CP48_RS04025 SM00382 ATPases associated with a variety of cellular activities CP48_RS04035 SM00493 CP48_RS04035 CP48_RS04040 SM00387 Histidine kinase-like ATPases CP48_RS04090 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS04110 SM00422 helix_turn_helix, mercury resistance CP48_RS04120 SM00244 prohibitin homologues CP48_RS04125 SM00382 ATPases associated with a variety of cellular activities CP48_RS04140 SM00822 CP48_RS04140 CP48_RS04150 SM00382 ATPases associated with a variety of cellular activities CP48_RS04160 SM00450 Rhodanese Homology Domain CP48_RS04175 SM00346 helix_turn_helix isocitrate lyase regulation CP48_RS04255 SM01001 AIR carboxylase CP48_RS04270 SM00840 CP48_RS04270 CP48_RS04315 SM00421 helix_turn_helix, Lux Regulon CP48_RS04315 SM00448 cheY-homologous receiver domain CP48_RS04325 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS04335 SM00028 Tetratricopeptide repeats CP48_RS04380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS04380 SM00387 Histidine kinase-like ATPases CP48_RS04380 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS04385 SM00448 cheY-homologous receiver domain CP48_RS04385 SM00862 Transcriptional regulatory protein, C terminal CP48_RS04470 SM00923 MbtH-like protein CP48_RS04475 SM00823 Phosphopantetheine attachment site CP48_RS04475 SM00824 Thioesterase CP48_RS04485 SM00382 ATPases associated with a variety of cellular activities CP48_RS04525 SM00822 CP48_RS04525 CP48_RS04555 SM00470 ParB-like nuclease domain CP48_RS04640 SM00764 Citrate lyase ligase C-terminal domain CP48_RS04645 SM00091 PAS domain CP48_RS04645 SM00387 Histidine kinase-like ATPases CP48_RS04650 SM00448 cheY-homologous receiver domain CP48_RS04665 SM00357 Cold shock protein domain CP48_RS04685 SM00729 Elongator protein 3, MiaB family, Radical SAM CP48_RS04710 SM00936 Penicillin-binding protein 5, C-terminal domain CP48_RS04740 SM00855 Phosphoglycerate mutase family CP48_RS04770 SM00671 Sel1-like repeats. CP48_RS04780 SM00271 DnaJ molecular chaperone homology domain CP48_RS04785 SM00671 Sel1-like repeats. CP48_RS04810 SM00382 ATPases associated with a variety of cellular activities CP48_RS04825 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS04840 SM00116 Domain in cystathionine beta-synthase and other proteins. CP48_RS04840 SM01091 Transporter associated domain CP48_RS04855 SM00729 Elongator protein 3, MiaB family, Radical SAM CP48_RS05015 SM00448 cheY-homologous receiver domain CP48_RS05015 SM00862 Transcriptional regulatory protein, C terminal CP48_RS05020 SM00387 Histidine kinase-like ATPases CP48_RS05020 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS05100 SM00796 Allophanate hydrolase subunit 1 CP48_RS05105 SM00797 Allophanate hydrolase subunit 2 CP48_RS05115 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CP48_RS05115 SM01232 CP48_RS05115 CP48_RS05180 SM00861 Transketolase, pyrimidine binding domain CP48_RS05195 SM00881 CoA binding domain CP48_RS05200 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS05200 SM00866 CP48_RS05200 CP48_RS05210 SM00872 Alpha mannosidase, middle domain CP48_RS05355 SM00855 Phosphoglycerate mutase family CP48_RS05380 SM00382 ATPases associated with a variety of cellular activities CP48_RS05405 SM00382 ATPases associated with a variety of cellular activities CP48_RS05455 SM00729 Elongator protein 3, MiaB family, Radical SAM CP48_RS05455 SM00876 Biotin and Thiamin Synthesis associated domain CP48_RS05475 SM00487 DEAD-like helicases superfamily CP48_RS05475 SM00490 helicase superfamily c-terminal domain CP48_RS05485 SM00729 Elongator protein 3, MiaB family, Radical SAM CP48_RS05490 SM00852 Probable molybdopterin binding domain CP48_RS05525 SM00155 Phospholipase D. Active site motifs. CP48_RS05550 SM00382 ATPases associated with a variety of cellular activities CP48_RS05565 SM00487 DEAD-like helicases superfamily CP48_RS05565 SM00490 helicase superfamily c-terminal domain CP48_RS05575 SM00487 DEAD-like helicases superfamily CP48_RS05575 SM00488 CP48_RS05575 CP48_RS05575 SM00491 CP48_RS05575 CP48_RS05600 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CP48_RS05630 SM00382 ATPases associated with a variety of cellular activities CP48_RS05640 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS05640 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CP48_RS05675 SM00529 Helix-turn-helix diphteria tox regulatory element CP48_RS05690 SM00382 ATPases associated with a variety of cellular activities CP48_RS05725 SM00852 Probable molybdopterin binding domain CP48_RS05735 SM00382 ATPases associated with a variety of cellular activities CP48_RS05755 SM00052 Putative diguanylate phosphodiesterase CP48_RS05760 SM00267 diguanylate cyclase CP48_RS05765 SM00729 Elongator protein 3, MiaB family, Radical SAM CP48_RS05785 SM00936 Penicillin-binding protein 5, C-terminal domain CP48_RS05790 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS05790 SM01134 CP48_RS05790 CP48_RS05795 SM00014 Acid phosphatase homologues CP48_RS06010 SM00857 Resolvase, N terminal domain CP48_RS06095 SM00382 ATPases associated with a variety of cellular activities CP48_RS06120 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS06120 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CP48_RS06135 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS06135 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CP48_RS06140 SM00382 ATPases associated with a variety of cellular activities CP48_RS06155 SM00644 CP48_RS06155 CP48_RS06220 SM00382 ATPases associated with a variety of cellular activities CP48_RS06225 SM00357 Cold shock protein domain CP48_RS06235 SM00382 ATPases associated with a variety of cellular activities CP48_RS06235 SM01086 C-terminal, D2-small domain, of ClpB protein CP48_RS06280 SM00487 DEAD-like helicases superfamily CP48_RS06375 SM00988 UreE urease accessory protein, N-terminal domain CP48_RS06660 SM00470 ParB-like nuclease domain CP48_RS06690 SM01006 Siderophore biosynthesis protein domain CP48_RS06755 SM00869 Autotransporter beta-domain CP48_RS06835 SM00316 Ribosomal protein S1-like RNA-binding domain CP48_RS06845 SM00382 ATPases associated with a variety of cellular activities CP48_RS06850 SM00382 ATPases associated with a variety of cellular activities CP48_RS06860 SM00344 helix_turn_helix ASNC type CP48_RS06865 SM00843 CP48_RS06865 CP48_RS06875 SM00382 ATPases associated with a variety of cellular activities CP48_RS06885 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS06970 SM00316 Ribosomal protein S1-like RNA-binding domain CP48_RS06975 SM00411 bacterial (prokaryotic) histone like domain CP48_RS06980 SM00849 Metallo-beta-lactamase superfamily CP48_RS06985 SM00382 ATPases associated with a variety of cellular activities CP48_RS07050 SM00849 Metallo-beta-lactamase superfamily CP48_RS07085 SM00382 ATPases associated with a variety of cellular activities CP48_RS07100 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS07160 SM00981 CP48_RS07160 CP48_RS07165 SM00382 ATPases associated with a variety of cellular activities CP48_RS07240 SM00851 MGS-like domain CP48_RS07255 SM00881 CoA binding domain CP48_RS07260 SM00992 Hemimethylated DNA-binding protein YccV like CP48_RS07265 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CP48_RS07345 SM00226 Low molecular weight phosphatase family CP48_RS07375 SM00357 Cold shock protein domain CP48_RS07380 SM00357 Cold shock protein domain CP48_RS07400 SM00073 Histidine Phosphotransfer domain CP48_RS07400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS07400 SM00387 Histidine kinase-like ATPases CP48_RS07400 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS07400 SM00448 cheY-homologous receiver domain CP48_RS07410 SM00448 cheY-homologous receiver domain CP48_RS07410 SM00862 Transcriptional regulatory protein, C terminal CP48_RS07435 SM00271 DnaJ molecular chaperone homology domain CP48_RS07475 SM00903 Flavin reductase like domain CP48_RS07580 SM00267 diguanylate cyclase CP48_RS07620 SM00481 DNA polymerase alpha chain like domain CP48_RS07650 SM00421 helix_turn_helix, Lux Regulon CP48_RS07680 SM00506 Appr-1"-p processing enzyme CP48_RS07685 SM00155 Phospholipase D. Active site motifs. CP48_RS07745 SM00867 YceI-like domain CP48_RS07825 SM00858 CP48_RS07825 CP48_RS07870 SM00047 Lysozyme subfamily 2 CP48_RS07885 SM00316 Ribosomal protein S1-like RNA-binding domain CP48_RS07895 SM00363 S4 RNA-binding domain CP48_RS07925 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CP48_RS07930 SM00822 CP48_RS07930 CP48_RS07940 SM00825 Beta-ketoacyl synthase CP48_RS08030 SM00257 Lysin motif CP48_RS08035 SM00487 DEAD-like helicases superfamily CP48_RS08035 SM00490 helicase superfamily c-terminal domain CP48_RS08035 SM00982 CP48_RS08035 CP48_RS08035 SM01058 CarD-like/TRCF domain CP48_RS08050 SM00382 ATPases associated with a variety of cellular activities CP48_RS08215 SM00507 HNH nucleases CP48_RS08230 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS08335 SM00635 Bacterial Ig-like domain 2 CP48_RS08405 SM00382 ATPases associated with a variety of cellular activities CP48_RS08420 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CP48_RS08425 SM00387 Histidine kinase-like ATPases CP48_RS08430 SM00448 cheY-homologous receiver domain CP48_RS08430 SM00862 Transcriptional regulatory protein, C terminal CP48_RS08460 SM01329 CP48_RS08460 CP48_RS08480 SM00422 helix_turn_helix, mercury resistance CP48_RS08485 SM00052 Putative diguanylate phosphodiesterase CP48_RS08485 SM01034 Sensors of blue-light using FAD CP48_RS08510 SM00052 Putative diguanylate phosphodiesterase CP48_RS08530 SM00869 Autotransporter beta-domain CP48_RS08630 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS08645 SM01005 Alanine racemase, C-terminal domain CP48_RS08650 SM01091 Transporter associated domain CP48_RS08690 SM01120 CP48_RS08690 CP48_RS08700 SM00091 PAS domain CP48_RS08700 SM00382 ATPases associated with a variety of cellular activities CP48_RS08705 SM00869 Autotransporter beta-domain CP48_RS08735 SM01400 CP48_RS08735 CP48_RS08755 SM00937 CP48_RS08755 CP48_RS08815 SM00421 helix_turn_helix, Lux Regulon CP48_RS08815 SM00448 cheY-homologous receiver domain CP48_RS08820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS08820 SM00387 Histidine kinase-like ATPases CP48_RS08835 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS08890 SM00448 cheY-homologous receiver domain CP48_RS08900 SM00528 Domain in histone-like proteins of HNS family CP48_RS08935 SM00382 ATPases associated with a variety of cellular activities CP48_RS08940 SM00382 ATPases associated with a variety of cellular activities CP48_RS08950 SM00155 Phospholipase D. Active site motifs. CP48_RS09050 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS09055 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS09120 SM00507 HNH nucleases CP48_RS09390 SM00481 DNA polymerase alpha chain like domain CP48_RS09400 SM00363 S4 RNA-binding domain CP48_RS09410 SM00822 CP48_RS09410 CP48_RS09435 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CP48_RS09435 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CP48_RS09435 SM00493 CP48_RS09435 CP48_RS09470 SM00014 Acid phosphatase homologues CP48_RS09480 SM00028 Tetratricopeptide repeats CP48_RS09485 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CP48_RS09500 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS09500 SM01134 CP48_RS09500 CP48_RS09510 SM00052 Putative diguanylate phosphodiesterase CP48_RS09510 SM00091 PAS domain CP48_RS09510 SM00267 diguanylate cyclase CP48_RS09520 SM00357 Cold shock protein domain CP48_RS09520 SM00955 CP48_RS09520 CP48_RS09540 SM00382 ATPases associated with a variety of cellular activities CP48_RS09545 SM00382 ATPases associated with a variety of cellular activities CP48_RS09580 SM01230 CP48_RS09580 CP48_RS09590 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS09610 SM00382 ATPases associated with a variety of cellular activities CP48_RS09635 SM00450 Rhodanese Homology Domain CP48_RS09640 SM00642 Alpha-amylase domain CP48_RS09695 SM00354 helix_turn _helix lactose operon repressor CP48_RS09710 SM00091 PAS domain CP48_RS09710 SM00382 ATPases associated with a variety of cellular activities CP48_RS09720 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CP48_RS09770 SM00100 Cyclic nucleotide-monophosphate binding domain CP48_RS09770 SM00419 helix_turn_helix, cAMP Regulatory protein CP48_RS09810 SM00463 Small MutS-related domain CP48_RS09815 SM00091 PAS domain CP48_RS09815 SM00267 diguanylate cyclase CP48_RS09830 SM00487 DEAD-like helicases superfamily CP48_RS09830 SM00490 helicase superfamily c-terminal domain CP48_RS09850 SM00890 Domain of unknown function CP48_RS09885 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS10005 SM00195 Dual specificity phosphatase, catalytic domain CP48_RS10005 SM00404 Protein tyrosine phosphatase, catalytic domain motif CP48_RS10015 SM00382 ATPases associated with a variety of cellular activities CP48_RS10015 SM00487 DEAD-like helicases superfamily CP48_RS10015 SM00490 helicase superfamily c-terminal domain CP48_RS10015 SM00847 Helicase associated domain (HA2) Add an annotation CP48_RS10030 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CP48_RS10050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CP48_RS10050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS10050 SM00319 Homologues of the ligand binding domain of Tar CP48_RS10060 SM01150 CP48_RS10060 CP48_RS10110 SM01321 CP48_RS10110 CP48_RS10125 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS10145 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS10150 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS10160 SM00382 ATPases associated with a variety of cellular activities CP48_RS10205 SM00829 Enoylreductase CP48_RS10210 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS10210 SM00895 CP48_RS10210 CP48_RS10310 SM00903 Flavin reductase like domain CP48_RS10340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS10365 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS10385 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS10390 SM00829 Enoylreductase CP48_RS10395 SM00919 Malic enzyme, NAD binding domain CP48_RS10395 SM01274 CP48_RS10395 CP48_RS10415 SM00382 ATPases associated with a variety of cellular activities CP48_RS10420 SM00382 ATPases associated with a variety of cellular activities CP48_RS10445 SM00052 Putative diguanylate phosphodiesterase CP48_RS10445 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CP48_RS10445 SM00091 PAS domain CP48_RS10445 SM00267 diguanylate cyclase CP48_RS10450 SM00267 diguanylate cyclase CP48_RS10485 SM00382 ATPases associated with a variety of cellular activities CP48_RS10500 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS10555 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS10560 SM00869 Autotransporter beta-domain CP48_RS10580 SM00382 ATPases associated with a variety of cellular activities CP48_RS10600 SM01133 CP48_RS10600 CP48_RS10625 SM00267 diguanylate cyclase CP48_RS10665 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS10675 SM00347 helix_turn_helix multiple antibiotic resistance protein CP48_RS10680 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS10705 SM00267 diguanylate cyclase CP48_RS10730 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS10730 SM00895 CP48_RS10730 CP48_RS10755 SM00857 Resolvase, N terminal domain CP48_RS10785 SM00060 Fibronectin type 3 domain CP48_RS10795 SM00232 JAB/MPN domain CP48_RS10825 SM00635 Bacterial Ig-like domain 2 CP48_RS10910 SM00357 Cold shock protein domain CP48_RS10935 SM00357 Cold shock protein domain CP48_RS10940 SM00357 Cold shock protein domain CP48_RS10950 SM00507 HNH nucleases CP48_RS11010 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS11055 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CP48_RS11085 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS11090 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS11170 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CP48_RS11170 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CP48_RS11195 SM00448 cheY-homologous receiver domain CP48_RS11195 SM00862 Transcriptional regulatory protein, C terminal CP48_RS11200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS11200 SM00387 Histidine kinase-like ATPases CP48_RS11200 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS11255 SM00354 helix_turn _helix lactose operon repressor CP48_RS11315 SM00900 CP48_RS11315 CP48_RS11325 SM00478 endonuclease III CP48_RS11325 SM00525 CP48_RS11325 CP48_RS11350 SM00363 S4 RNA-binding domain CP48_RS11375 SM00347 helix_turn_helix multiple antibiotic resistance protein CP48_RS11425 SM00479 CP48_RS11425 CP48_RS11430 SM00382 ATPases associated with a variety of cellular activities CP48_RS11430 SM00487 DEAD-like helicases superfamily CP48_RS11430 SM00490 helicase superfamily c-terminal domain CP48_RS11460 SM00354 helix_turn _helix lactose operon repressor CP48_RS11535 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain CP48_RS11560 SM00257 Lysin motif CP48_RS11580 SM00382 ATPases associated with a variety of cellular activities CP48_RS11645 SM00882 Coenzyme A transferase CP48_RS11655 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS11665 SM00893 Electron transfer flavoprotein domain CP48_RS11670 SM00893 Electron transfer flavoprotein domain CP48_RS11730 SM00382 ATPases associated with a variety of cellular activities CP48_RS11745 SM00411 bacterial (prokaryotic) histone like domain CP48_RS11750 SM00873 B3/4 domain CP48_RS11750 SM00874 tRNA synthetase B5 domain CP48_RS11750 SM00896 Ferredoxin-fold anticodon binding domain CP48_RS11780 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CP48_RS11845 SM01060 CP48_RS11845 CP48_RS11860 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS11895 SM00465 GIY-YIG type nucleases (URI domain) CP48_RS11970 SM00382 ATPases associated with a variety of cellular activities CP48_RS11975 SM00450 Rhodanese Homology Domain CP48_RS11995 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CP48_RS12005 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CP48_RS12005 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CP48_RS12005 SM00493 CP48_RS12005 CP48_RS12035 SM00870 CP48_RS12035 CP48_RS12050 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS12050 SM01134 CP48_RS12050 CP48_RS12070 SM00829 Enoylreductase CP48_RS12095 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CP48_RS12115 SM00763 PrkA AAA domain CP48_RS12125 SM00267 diguanylate cyclase CP48_RS12130 SM00267 diguanylate cyclase CP48_RS12150 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS12170 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CP48_RS12170 SM00267 diguanylate cyclase CP48_RS12215 SM01329 CP48_RS12215 CP48_RS12235 SM00341 Helicase and RNase D C-terminal CP48_RS12235 SM00474 3'-5' exonuclease CP48_RS12255 SM00487 DEAD-like helicases superfamily CP48_RS12255 SM00491 CP48_RS12255 CP48_RS12295 SM00052 Putative diguanylate phosphodiesterase CP48_RS12300 SM01091 Transporter associated domain CP48_RS12345 SM00357 Cold shock protein domain CP48_RS12375 SM00346 helix_turn_helix isocitrate lyase regulation CP48_RS12390 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CP48_RS12390 SM00245 tail specific protease CP48_RS12395 SM00945 ProQ/FINO family CP48_RS12400 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CP48_RS12465 SM00479 CP48_RS12465 CP48_RS12535 SM00257 Lysin motif CP48_RS12545 SM00382 ATPases associated with a variety of cellular activities CP48_RS12555 SM00382 ATPases associated with a variety of cellular activities CP48_RS12560 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CP48_RS12790 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS12855 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS12860 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS12880 SM00244 prohibitin homologues CP48_RS12950 SM00836 DALR anticodon binding domain CP48_RS12950 SM01016 Arginyl tRNA synthetase N terminal dom CP48_RS12980 SM00448 cheY-homologous receiver domain CP48_RS12985 SM00448 cheY-homologous receiver domain CP48_RS12990 SM00138 Methyltransferase, chemotaxis proteins CP48_RS12995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CP48_RS12995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS12995 SM00319 Homologues of the ligand binding domain of Tar CP48_RS13000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CP48_RS13000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS13000 SM00319 Homologues of the ligand binding domain of Tar CP48_RS13005 SM00260 Two component signalling adaptor domain CP48_RS13010 SM00073 Histidine Phosphotransfer domain CP48_RS13010 SM00260 Two component signalling adaptor domain CP48_RS13010 SM00387 Histidine kinase-like ATPases CP48_RS13010 SM01231 CP48_RS13010 CP48_RS13055 SM00382 ATPases associated with a variety of cellular activities CP48_RS13160 SM00487 DEAD-like helicases superfamily CP48_RS13215 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS13270 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CP48_RS13270 SM00465 GIY-YIG type nucleases (URI domain) CP48_RS13275 SM00421 helix_turn_helix, Lux Regulon CP48_RS13275 SM00448 cheY-homologous receiver domain CP48_RS13290 SM00421 helix_turn_helix, Lux Regulon CP48_RS13295 SM00382 ATPases associated with a variety of cellular activities CP48_RS13310 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS13310 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CP48_RS13345 SM00642 Alpha-amylase domain CP48_RS13380 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS13420 SM00382 ATPases associated with a variety of cellular activities CP48_RS13470 SM00421 helix_turn_helix, Lux Regulon CP48_RS13490 SM00267 diguanylate cyclase CP48_RS13545 SM00387 Histidine kinase-like ATPases CP48_RS13545 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS13550 SM00448 cheY-homologous receiver domain CP48_RS13550 SM00862 Transcriptional regulatory protein, C terminal CP48_RS13555 SM00095 Transthyretin CP48_RS13790 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS13805 SM00507 HNH nucleases CP48_RS13855 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS13940 SM00382 ATPases associated with a variety of cellular activities CP48_RS13945 SM00382 ATPases associated with a variety of cellular activities CP48_RS13950 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS13955 SM00823 Phosphopantetheine attachment site CP48_RS13960 SM00822 CP48_RS13960 CP48_RS13960 SM00823 Phosphopantetheine attachment site CP48_RS13960 SM00824 Thioesterase CP48_RS13960 SM00825 Beta-ketoacyl synthase CP48_RS13960 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CP48_RS13995 SM00634 Bacterial Ig-like domain (group 1) CP48_RS14080 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS14315 SM00871 Bacterial transcription activator, effector binding domain CP48_RS14320 SM00936 Penicillin-binding protein 5, C-terminal domain CP48_RS14325 SM00479 CP48_RS14325 CP48_RS14400 SM00984 UDP binding domain CP48_RS14405 SM01350 CP48_RS14405 CP48_RS14435 SM00858 CP48_RS14435 CP48_RS14550 SM00226 Low molecular weight phosphatase family CP48_RS14560 SM01091 Transporter associated domain CP48_RS14580 SM00052 Putative diguanylate phosphodiesterase CP48_RS14580 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CP48_RS14580 SM00091 PAS domain CP48_RS14580 SM00267 diguanylate cyclase CP48_RS14585 SM00478 endonuclease III CP48_RS14585 SM01009 AlkA N-terminal domain CP48_RS14605 SM00327 von Willebrand factor (vWF) type A domain CP48_RS14635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS14635 SM00387 Histidine kinase-like ATPases CP48_RS14635 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS14640 SM00448 cheY-homologous receiver domain CP48_RS14640 SM00862 Transcriptional regulatory protein, C terminal CP48_RS14665 SM00046 Diacylglycerol kinase catalytic domain (presumed) CP48_RS14670 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS14670 SM01134 CP48_RS14670 CP48_RS14675 SM00829 Enoylreductase CP48_RS14705 SM01133 CP48_RS14705 CP48_RS14725 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS14725 SM00866 CP48_RS14725 CP48_RS14730 SM00641 Glycosyl hydrolases family 25 CP48_RS14800 SM00773 Proposed nucleic acid binding domain CP48_RS14830 SM00382 ATPases associated with a variety of cellular activities CP48_RS14845 SM00327 von Willebrand factor (vWF) type A domain CP48_RS14865 SM00448 cheY-homologous receiver domain CP48_RS14865 SM00850 LytTr DNA-binding domain CP48_RS14870 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CP48_RS14875 SM00422 helix_turn_helix, mercury resistance CP48_RS14890 SM00382 ATPases associated with a variety of cellular activities CP48_RS14905 SM01217 CP48_RS14905 CP48_RS14990 SM00382 ATPases associated with a variety of cellular activities CP48_RS15000 SM00354 helix_turn _helix lactose operon repressor CP48_RS15055 SM00518 AP endonuclease family 2 CP48_RS15075 SM00100 Cyclic nucleotide-monophosphate binding domain CP48_RS15120 SM00841 Elongation factor P, C-terminal CP48_RS15120 SM01185 CP48_RS15120 CP48_RS15130 SM00833 Cobalamin synthesis protein cobW C-terminal domain CP48_RS15135 SM00014 Acid phosphatase homologues CP48_RS15145 SM00052 Putative diguanylate phosphodiesterase CP48_RS15165 SM00382 ATPases associated with a variety of cellular activities CP48_RS15180 SM00363 S4 RNA-binding domain CP48_RS15185 SM00487 DEAD-like helicases superfamily CP48_RS15185 SM00490 helicase superfamily c-terminal domain CP48_RS15255 SM00885 D5 N terminal like CP48_RS15320 SM00421 helix_turn_helix, Lux Regulon CP48_RS15320 SM00448 cheY-homologous receiver domain CP48_RS15360 SM00382 ATPases associated with a variety of cellular activities CP48_RS15385 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS15415 SM00382 ATPases associated with a variety of cellular activities CP48_RS15425 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS15450 SM00387 Histidine kinase-like ATPases CP48_RS15455 SM00421 helix_turn_helix, Lux Regulon CP48_RS15455 SM00448 cheY-homologous receiver domain CP48_RS15460 SM00387 Histidine kinase-like ATPases CP48_RS15460 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS15460 SM00448 cheY-homologous receiver domain CP48_RS15465 SM00091 PAS domain CP48_RS15465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS15465 SM00387 Histidine kinase-like ATPases CP48_RS15465 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS15470 SM00382 ATPases associated with a variety of cellular activities CP48_RS15470 SM00448 cheY-homologous receiver domain CP48_RS15475 SM00882 Coenzyme A transferase CP48_RS15480 SM00882 Coenzyme A transferase CP48_RS15505 SM01359 CP48_RS15505 CP48_RS15505 SM01360 CP48_RS15505 CP48_RS15520 SM00434 DNA Topoisomerase IV CP48_RS15530 SM00869 Autotransporter beta-domain CP48_RS15605 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CP48_RS15610 SM00346 helix_turn_helix isocitrate lyase regulation CP48_RS15615 SM00852 Probable molybdopterin binding domain CP48_RS15680 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CP48_RS15715 SM00849 Metallo-beta-lactamase superfamily CP48_RS15770 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS15770 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CP48_RS15775 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CP48_RS15810 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CP48_RS15875 SM00905 Dihydroneopterin aldolase CP48_RS15890 SM00382 ATPases associated with a variety of cellular activities CP48_RS15905 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS15910 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS15955 SM00859 Semialdehyde dehydrogenase, NAD binding domain CP48_RS15975 SM00825 Beta-ketoacyl synthase CP48_RS16015 SM00463 Small MutS-related domain CP48_RS16125 SM00421 helix_turn_helix, Lux Regulon CP48_RS16125 SM00448 cheY-homologous receiver domain CP48_RS16130 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS16130 SM00073 Histidine Phosphotransfer domain CP48_RS16130 SM00387 Histidine kinase-like ATPases CP48_RS16130 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS16130 SM00448 cheY-homologous receiver domain CP48_RS16185 SM00387 Histidine kinase-like ATPases CP48_RS16190 SM00448 cheY-homologous receiver domain CP48_RS16190 SM00850 LytTr DNA-binding domain CP48_RS16195 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS16260 SM00052 Putative diguanylate phosphodiesterase CP48_RS16260 SM00267 diguanylate cyclase CP48_RS16355 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CP48_RS16355 SM00292 breast cancer carboxy-terminal domain CP48_RS16355 SM00532 Ligase N family CP48_RS16360 SM00771 ZipA, C-terminal domain (FtsZ-binding) CP48_RS16405 SM00382 ATPases associated with a variety of cellular activities CP48_RS16425 SM00822 CP48_RS16425 CP48_RS16470 SM00646 CP48_RS16470 CP48_RS16480 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS16485 SM00877 CP48_RS16485 CP48_RS16490 SM00877 CP48_RS16490 CP48_RS16535 SM00877 CP48_RS16535 CP48_RS16560 SM00877 CP48_RS16560 CP48_RS16565 SM00919 Malic enzyme, NAD binding domain CP48_RS16565 SM01274 CP48_RS16565 CP48_RS16575 SM00861 Transketolase, pyrimidine binding domain CP48_RS16595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS16595 SM00387 Histidine kinase-like ATPases CP48_RS16655 SM01130 CP48_RS16655 CP48_RS16735 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CP48_RS16735 SM00382 ATPases associated with a variety of cellular activities CP48_RS16795 SM00052 Putative diguanylate phosphodiesterase CP48_RS16795 SM00267 diguanylate cyclase CP48_RS16825 SM00116 Domain in cystathionine beta-synthase and other proteins. CP48_RS16825 SM01240 CP48_RS16825 CP48_RS16845 SM00564 beta-propeller repeat CP48_RS16865 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS16875 SM00562 CP48_RS16875 CP48_RS16885 SM01359 CP48_RS16885 CP48_RS16885 SM01360 CP48_RS16885 CP48_RS16920 SM00271 DnaJ molecular chaperone homology domain CP48_RS17010 SM00829 Enoylreductase CP48_RS17020 SM00382 ATPases associated with a variety of cellular activities CP48_RS17030 SM00028 Tetratricopeptide repeats CP48_RS17050 SM00938 Nitrogen regulatory protein P-II CP48_RS17055 SM00382 ATPases associated with a variety of cellular activities CP48_RS17055 SM00448 cheY-homologous receiver domain CP48_RS17065 SM00387 Histidine kinase-like ATPases CP48_RS17065 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS17070 SM01211 CP48_RS17070 CP48_RS17075 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS17135 SM00358 Double-stranded RNA binding motif CP48_RS17135 SM00535 Ribonuclease III family CP48_RS17185 SM00487 DEAD-like helicases superfamily CP48_RS17185 SM00490 helicase superfamily c-terminal domain CP48_RS17210 SM00986 Uracil DNA glycosylase superfamily CP48_RS17210 SM00987 UreE urease accessory protein, C-terminal domain CP48_RS17215 SM00967 RNA 2'-O ribose methyltransferase substrate binding CP48_RS17230 SM01144 CP48_RS17230 CP48_RS17235 SM00881 CoA binding domain CP48_RS17240 SM00155 Phospholipase D. Active site motifs. CP48_RS17280 SM00382 ATPases associated with a variety of cellular activities CP48_RS17280 SM01086 C-terminal, D2-small domain, of ClpB protein CP48_RS17290 SM00363 S4 RNA-binding domain CP48_RS17310 SM00830 Chorismate mutase type II CP48_RS17315 SM00830 Chorismate mutase type II CP48_RS17335 SM00267 diguanylate cyclase CP48_RS17365 SM00382 ATPases associated with a variety of cellular activities CP48_RS17365 SM00962 SRP54-type protein, GTPase domain CP48_RS17365 SM00963 SRP54-type protein, helical bundle domain CP48_RS17375 SM01091 Transporter associated domain CP48_RS17420 SM00869 Autotransporter beta-domain CP48_RS17475 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS17475 SM00895 CP48_RS17475 CP48_RS17480 SM00257 Lysin motif CP48_RS17480 SM00749 bacterial OsmY and nodulation domain CP48_RS17490 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CP48_RS17495 SM00450 Rhodanese Homology Domain CP48_RS17500 SM00528 Domain in histone-like proteins of HNS family CP48_RS17540 SM00382 ATPases associated with a variety of cellular activities CP48_RS17570 SM00347 helix_turn_helix multiple antibiotic resistance protein CP48_RS17635 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CP48_RS17650 SM00382 ATPases associated with a variety of cellular activities CP48_RS17690 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS17690 SM01134 CP48_RS17690 CP48_RS17700 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CP48_RS17700 SM00382 ATPases associated with a variety of cellular activities CP48_RS17705 SM00849 Metallo-beta-lactamase superfamily CP48_RS17725 SM00354 helix_turn _helix lactose operon repressor CP48_RS17740 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS17830 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CP48_RS17830 SM00382 ATPases associated with a variety of cellular activities CP48_RS17840 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CP48_RS17840 SM00534 ATPase domain of DNA mismatch repair MUTS family CP48_RS17850 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS17850 SM01134 CP48_RS17850 CP48_RS17865 SM01007 Class II Aldolase and Adducin N-terminal domain CP48_RS17885 SM00257 Lysin motif CP48_RS17955 SM01101 CP48_RS17955 CP48_RS18040 SM00893 Electron transfer flavoprotein domain CP48_RS18085 SM01192 CP48_RS18085 CP48_RS18085 SM01193 CP48_RS18085 CP48_RS18105 SM00966 SpoVT / AbrB like domain CP48_RS18110 SM00954 Region found in RelA / SpoT proteins CP48_RS18120 SM00073 Histidine Phosphotransfer domain CP48_RS18120 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS18120 SM00387 Histidine kinase-like ATPases CP48_RS18120 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS18120 SM00448 cheY-homologous receiver domain CP48_RS18125 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CP48_RS18130 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CP48_RS18185 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CP48_RS18185 SM00475 5'-3' exonuclease CP48_RS18195 SM01007 Class II Aldolase and Adducin N-terminal domain CP48_RS18220 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS18220 SM01134 CP48_RS18220 CP48_RS18260 SM00925 MltA specific insert domain CP48_RS18280 SM00646 CP48_RS18280 CP48_RS18290 SM00382 ATPases associated with a variety of cellular activities CP48_RS18340 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CP48_RS18360 SM00927 DNA mismatch repair enzyme MutH CP48_RS18385 SM00563 Phosphate acyltransferases CP48_RS18390 SM00354 helix_turn _helix lactose operon repressor CP48_RS18450 SM00862 Transcriptional regulatory protein, C terminal CP48_RS18475 SM00028 Tetratricopeptide repeats CP48_RS18475 SM00862 Transcriptional regulatory protein, C terminal CP48_RS18490 SM00421 helix_turn_helix, Lux Regulon CP48_RS18535 SM00421 helix_turn_helix, Lux Regulon CP48_RS18665 SM00945 ProQ/FINO family CP48_RS18675 SM00885 D5 N terminal like CP48_RS18815 SM00257 Lysin motif CP48_RS18820 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CP48_RS18825 SM01092 CO dehydrogenase flavoprotein C-terminal domain CP48_RS18835 SM00091 PAS domain CP48_RS18835 SM00382 ATPases associated with a variety of cellular activities CP48_RS18890 SM01092 CO dehydrogenase flavoprotein C-terminal domain CP48_RS18895 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CP48_RS18950 SM00937 CP48_RS18950 CP48_RS18995 SM01022 CP48_RS18995 CP48_RS19035 SM01011 Aminopeptidase P, N-terminal domain CP48_RS19130 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CP48_RS19165 SM00861 Transketolase, pyrimidine binding domain CP48_RS19215 SM00731 SprT homologues. CP48_RS19240 SM00732 Likely ribonuclease with RNase H fold. CP48_RS19245 SM00382 ATPases associated with a variety of cellular activities CP48_RS19260 SM01152 CP48_RS19260 CP48_RS19270 SM00729 Elongator protein 3, MiaB family, Radical SAM CP48_RS19280 SM00870 CP48_RS19280 CP48_RS19305 SM00478 endonuclease III CP48_RS19305 SM00525 CP48_RS19305 CP48_RS19370 SM00382 ATPases associated with a variety of cellular activities CP48_RS19430 SM00487 DEAD-like helicases superfamily CP48_RS19430 SM00491 CP48_RS19430 CP48_RS19580 SM00869 Autotransporter beta-domain CP48_RS19710 SM00382 ATPases associated with a variety of cellular activities CP48_RS19735 SM01276 CP48_RS19735 CP48_RS19775 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS19775 SM00895 CP48_RS19775 CP48_RS19955 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS19985 SM00729 Elongator protein 3, MiaB family, Radical SAM CP48_RS19995 SM00563 Phosphate acyltransferases CP48_RS20000 SM00434 DNA Topoisomerase IV CP48_RS20010 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS20020 SM00871 Bacterial transcription activator, effector binding domain CP48_RS20030 SM00448 cheY-homologous receiver domain CP48_RS20030 SM00862 Transcriptional regulatory protein, C terminal CP48_RS20035 SM00387 Histidine kinase-like ATPases CP48_RS20035 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS20065 SM00387 Histidine kinase-like ATPases CP48_RS20065 SM00433 TopoisomeraseII CP48_RS20165 SM00244 prohibitin homologues CP48_RS20185 SM01118 CP48_RS20185 CP48_RS20195 SM00287 Bacterial SH3 domain homologues CP48_RS20210 SM00905 Dihydroneopterin aldolase CP48_RS20215 SM01207 CP48_RS20215 CP48_RS20250 SM00400 zinc finger CP48_RS20250 SM00493 CP48_RS20250 CP48_RS20250 SM00766 DNA primase DnaG DnaB-binding CP48_RS20280 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CP48_RS20280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CP48_RS20295 SM00354 helix_turn _helix lactose operon repressor CP48_RS20300 SM01038 Beta galactosidase small chain CP48_RS20365 SM00858 CP48_RS20365 CP48_RS20415 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS20415 SM00895 CP48_RS20415 CP48_RS20570 SM00858 CP48_RS20570 CP48_RS20585 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS20585 SM01134 CP48_RS20585 CP48_RS20690 SM00749 bacterial OsmY and nodulation domain CP48_RS20700 SM00859 Semialdehyde dehydrogenase, NAD binding domain CP48_RS20715 SM00465 GIY-YIG type nucleases (URI domain) CP48_RS20755 SM00487 DEAD-like helicases superfamily CP48_RS20755 SM00490 helicase superfamily c-terminal domain CP48_RS20760 SM00028 Tetratricopeptide repeats CP48_RS20765 SM00316 Ribosomal protein S1-like RNA-binding domain CP48_RS20765 SM00322 K homology RNA-binding domain CP48_RS20770 SM01387 CP48_RS20770 CP48_RS20790 SM00316 Ribosomal protein S1-like RNA-binding domain CP48_RS20835 SM00382 ATPases associated with a variety of cellular activities CP48_RS20845 SM01103 CP48_RS20845 CP48_RS20920 SM00382 ATPases associated with a variety of cellular activities CP48_RS20950 SM00382 ATPases associated with a variety of cellular activities CP48_RS20995 SM00073 Histidine Phosphotransfer domain CP48_RS20995 SM00091 PAS domain CP48_RS20995 SM00387 Histidine kinase-like ATPases CP48_RS20995 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS20995 SM00448 cheY-homologous receiver domain CP48_RS21000 SM00729 Elongator protein 3, MiaB family, Radical SAM CP48_RS21045 SM01130 CP48_RS21045 CP48_RS21050 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS21050 SM00895 CP48_RS21050 CP48_RS21090 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CP48_RS21095 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CP48_RS21150 SM00316 Ribosomal protein S1-like RNA-binding domain CP48_RS21180 SM00052 Putative diguanylate phosphodiesterase CP48_RS21180 SM00267 diguanylate cyclase CP48_RS21185 SM00829 Enoylreductase CP48_RS21210 SM00878 Biotin carboxylase C-terminal domain CP48_RS21275 SM00062 Bacterial periplasmic substrate-binding proteins CP48_RS21290 SM00382 ATPases associated with a variety of cellular activities CP48_RS21395 SM00422 helix_turn_helix, mercury resistance CP48_RS21410 SM00662 RNA polymerases D CP48_RS21415 SM00363 S4 RNA-binding domain CP48_RS21415 SM01390 CP48_RS21415 CP48_RS21480 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CP48_RS21485 SM01374 CP48_RS21485 CP48_RS21505 SM00322 K homology RNA-binding domain CP48_RS21520 SM01382 CP48_RS21520 CP48_RS21520 SM01383 CP48_RS21520 CP48_RS21540 SM01403 CP48_RS21540 CP48_RS21565 SM00382 ATPases associated with a variety of cellular activities CP48_RS21625 SM00495 Chitin-binding domain type 3 CP48_RS21635 SM00838 Elongation factor G C-terminus CP48_RS21635 SM00889 Elongation factor G, domain IV CP48_RS21700 SM00382 ATPases associated with a variety of cellular activities CP48_RS21730 SM00100 Cyclic nucleotide-monophosphate binding domain CP48_RS21730 SM00419 helix_turn_helix, cAMP Regulatory protein CP48_RS21815 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS21815 SM00866 CP48_RS21815 CP48_RS21895 SM00965 Secretin and TonB N terminus short domain CP48_RS21940 SM00363 S4 RNA-binding domain CP48_RS21965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS21965 SM00387 Histidine kinase-like ATPases CP48_RS21965 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS21970 SM00448 cheY-homologous receiver domain CP48_RS21970 SM00862 Transcriptional regulatory protein, C terminal CP48_RS21980 SM00316 Ribosomal protein S1-like RNA-binding domain CP48_RS21980 SM00732 Likely ribonuclease with RNase H fold. CP48_RS21985 SM00899 CP48_RS21985 CP48_RS22035 SM00421 helix_turn_helix, Lux Regulon CP48_RS22050 SM00382 ATPases associated with a variety of cellular activities CP48_RS22055 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS22055 SM01134 CP48_RS22055 CP48_RS22065 SM00450 Rhodanese Homology Domain CP48_RS22095 SM00642 Alpha-amylase domain CP48_RS22100 SM00642 Alpha-amylase domain CP48_RS22105 SM00859 Semialdehyde dehydrogenase, NAD binding domain CP48_RS22125 SM00354 helix_turn _helix lactose operon repressor CP48_RS22175 SM00382 ATPases associated with a variety of cellular activities CP48_RS22200 SM00382 ATPases associated with a variety of cellular activities CP48_RS22205 SM00382 ATPases associated with a variety of cellular activities CP48_RS22250 SM00382 ATPases associated with a variety of cellular activities CP48_RS22255 SM00382 ATPases associated with a variety of cellular activities CP48_RS22255 SM00962 SRP54-type protein, GTPase domain CP48_RS22255 SM00963 SRP54-type protein, helical bundle domain CP48_RS22330 SM00382 ATPases associated with a variety of cellular activities CP48_RS22335 SM00382 ATPases associated with a variety of cellular activities CP48_RS22360 SM00382 ATPases associated with a variety of cellular activities CP48_RS22450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CP48_RS22475 SM00421 helix_turn_helix, Lux Regulon CP48_RS22520 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS22525 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS22535 SM01235 CP48_RS22535 CP48_RS22545 SM00421 helix_turn_helix, Lux Regulon CP48_RS22570 SM00052 Putative diguanylate phosphodiesterase CP48_RS22600 SM00052 Putative diguanylate phosphodiesterase CP48_RS22600 SM00267 diguanylate cyclase CP48_RS22605 SM00028 Tetratricopeptide repeats CP48_RS22680 SM00382 ATPases associated with a variety of cellular activities CP48_RS22685 SM00382 ATPases associated with a variety of cellular activities CP48_RS22770 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS22775 SM00357 Cold shock protein domain CP48_RS22840 SM00382 ATPases associated with a variety of cellular activities CP48_RS22850 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS22855 SM00047 Lysozyme subfamily 2 CP48_RS22860 SM00642 Alpha-amylase domain CP48_RS22880 SM00346 helix_turn_helix isocitrate lyase regulation CP48_RS22915 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CP48_RS22925 SM01007 Class II Aldolase and Adducin N-terminal domain CP48_RS23065 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS23065 SM00895 CP48_RS23065 CP48_RS23080 SM00971 Serine acetyltransferase, N-terminal CP48_RS23100 SM00450 Rhodanese Homology Domain CP48_RS23125 SM00829 Enoylreductase CP48_RS23205 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CP48_RS23205 SM01232 CP48_RS23205 CP48_RS23265 SM00532 Ligase N family CP48_RS23270 SM00072 Guanylate kinase homologues. CP48_RS23275 SM01409 CP48_RS23275 CP48_RS23280 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CP48_RS23280 SM00954 Region found in RelA / SpoT proteins CP48_RS23290 SM00487 DEAD-like helicases superfamily CP48_RS23290 SM00490 helicase superfamily c-terminal domain CP48_RS23375 SM00493 CP48_RS23375 CP48_RS23375 SM00778 Zinc-binding domain of primase-helicase CP48_RS23375 SM00885 D5 N terminal like CP48_RS23440 SM00387 Histidine kinase-like ATPases CP48_RS23445 SM00421 helix_turn_helix, Lux Regulon CP48_RS23445 SM00448 cheY-homologous receiver domain CP48_RS23510 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS23565 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CP48_RS23580 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS23580 SM00895 CP48_RS23580 CP48_RS23605 SM00387 Histidine kinase-like ATPases CP48_RS23605 SM00433 TopoisomeraseII CP48_RS23615 SM00480 DNA polymerase III beta subunit CP48_RS23620 SM00382 ATPases associated with a variety of cellular activities CP48_RS23620 SM00760 Bacterial dnaA protein helix-turn-helix domain CP48_RS23635 SM01234 CP48_RS23635 CP48_RS23735 SM01061 CAT RNA binding domain CP48_RS23745 SM00382 ATPases associated with a variety of cellular activities CP48_RS23800 SM00382 ATPases associated with a variety of cellular activities CP48_RS23845 SM01228 CP48_RS23845 CP48_RS23855 SM00344 helix_turn_helix ASNC type CP48_RS23865 SM00327 von Willebrand factor (vWF) type A domain CP48_RS23870 SM00382 ATPases associated with a variety of cellular activities CP48_RS23885 SM00382 ATPases associated with a variety of cellular activities CP48_RS23905 SM00354 helix_turn _helix lactose operon repressor CP48_RS23915 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS23915 SM00895 CP48_RS23915 CP48_RS23960 SM00382 ATPases associated with a variety of cellular activities CP48_RS24025 SM00487 DEAD-like helicases superfamily CP48_RS24025 SM00490 helicase superfamily c-terminal domain CP48_RS24040 SM00357 Cold shock protein domain CP48_RS24040 SM00382 ATPases associated with a variety of cellular activities CP48_RS24040 SM00959 Rho termination factor, N-terminal domain CP48_RS24065 SM00984 UDP binding domain CP48_RS24170 SM01219 CP48_RS24170 CP48_RS24260 SM00341 Helicase and RNase D C-terminal CP48_RS24260 SM00487 DEAD-like helicases superfamily CP48_RS24260 SM00490 helicase superfamily c-terminal domain CP48_RS24260 SM00956 CP48_RS24260 CP48_RS24350 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CP48_RS24450 SM00563 Phosphate acyltransferases CP48_RS24465 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CP48_RS24465 SM00474 3'-5' exonuclease CP48_RS24465 SM00475 5'-3' exonuclease CP48_RS24465 SM00482 DNA polymerase A domain CP48_RS24480 SM00729 Elongator protein 3, MiaB family, Radical SAM CP48_RS24490 SM00382 ATPases associated with a variety of cellular activities CP48_RS24490 SM00448 cheY-homologous receiver domain CP48_RS24495 SM00091 PAS domain CP48_RS24495 SM00387 Histidine kinase-like ATPases CP48_RS24495 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS24500 SM01230 CP48_RS24500 CP48_RS24515 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS24515 SM00866 CP48_RS24515 CP48_RS24560 SM01133 CP48_RS24560 CP48_RS24575 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS24575 SM01134 CP48_RS24575 CP48_RS24635 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS24675 SM01007 Class II Aldolase and Adducin N-terminal domain CP48_RS24695 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS24730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS24730 SM00387 Histidine kinase-like ATPases CP48_RS24730 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS24735 SM00448 cheY-homologous receiver domain CP48_RS24735 SM00862 Transcriptional regulatory protein, C terminal CP48_RS24825 SM00382 ATPases associated with a variety of cellular activities CP48_RS24825 SM01086 C-terminal, D2-small domain, of ClpB protein CP48_RS24840 SM00354 helix_turn _helix lactose operon repressor CP48_RS24845 SM00487 DEAD-like helicases superfamily CP48_RS24845 SM00490 helicase superfamily c-terminal domain CP48_RS24985 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS25005 SM00859 Semialdehyde dehydrogenase, NAD binding domain CP48_RS25125 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CP48_RS25125 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CP48_RS25130 SM00649 Ribosomal protein L11/L12 CP48_RS25155 SM00663 RNA polymerase I subunit A N-terminus CP48_RS25165 SM00876 Biotin and Thiamin Synthesis associated domain CP48_RS25220 SM00411 bacterial (prokaryotic) histone like domain CP48_RS25235 SM00387 Histidine kinase-like ATPases CP48_RS25235 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS25240 SM00382 ATPases associated with a variety of cellular activities CP48_RS25240 SM00448 cheY-homologous receiver domain CP48_RS25245 SM01209 CP48_RS25245 CP48_RS25245 SM01210 CP48_RS25245 CP48_RS25250 SM00798 AICARFT/IMPCHase bienzyme CP48_RS25250 SM00851 MGS-like domain CP48_RS25315 SM00346 helix_turn_helix isocitrate lyase regulation CP48_RS25320 SM01018 B12 binding domain CP48_RS25335 SM00363 S4 RNA-binding domain CP48_RS25415 SM00382 ATPases associated with a variety of cellular activities CP48_RS25450 SM00563 Phosphate acyltransferases CP48_RS25500 SM00829 Enoylreductase CP48_RS25505 SM00382 ATPases associated with a variety of cellular activities CP48_RS25510 SM01005 Alanine racemase, C-terminal domain CP48_RS25555 SM00052 Putative diguanylate phosphodiesterase CP48_RS25560 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS25565 SM00422 helix_turn_helix, mercury resistance CP48_RS25630 SM00028 Tetratricopeptide repeats CP48_RS25640 SM00671 Sel1-like repeats. CP48_RS25650 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CP48_RS25675 SM00849 Metallo-beta-lactamase superfamily CP48_RS25700 SM00072 Guanylate kinase homologues. CP48_RS25710 SM00382 ATPases associated with a variety of cellular activities CP48_RS25715 SM00382 ATPases associated with a variety of cellular activities CP48_RS25740 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS25740 SM00866 CP48_RS25740 CP48_RS25755 SM00382 ATPases associated with a variety of cellular activities CP48_RS25790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS25790 SM00387 Histidine kinase-like ATPases CP48_RS25790 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS25795 SM00448 cheY-homologous receiver domain CP48_RS25795 SM00862 Transcriptional regulatory protein, C terminal CP48_RS25810 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS25820 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS25860 SM00448 cheY-homologous receiver domain CP48_RS25865 SM00091 PAS domain CP48_RS25865 SM00387 Histidine kinase-like ATPases CP48_RS25910 SM00862 Transcriptional regulatory protein, C terminal CP48_RS25960 SM00883 Chaperonin 10 Kd subunit CP48_RS25985 SM00841 Elongation factor P, C-terminal CP48_RS25985 SM01185 CP48_RS25985 CP48_RS26060 SM00479 CP48_RS26060 CP48_RS26095 SM00646 CP48_RS26095 CP48_RS26100 SM00853 MutL C terminal dimerisation domain CP48_RS26100 SM01340 CP48_RS26100 CP48_RS26125 SM00244 prohibitin homologues CP48_RS26135 SM00788 Adenylosuccinate synthetase CP48_RS26145 SM00316 Ribosomal protein S1-like RNA-binding domain CP48_RS26145 SM00357 Cold shock protein domain CP48_RS26145 SM00955 CP48_RS26145 CP48_RS26150 SM00967 RNA 2'-O ribose methyltransferase substrate binding CP48_RS26155 SM00346 helix_turn_helix isocitrate lyase regulation CP48_RS26160 SM01130 CP48_RS26160 CP48_RS26170 SM00858 CP48_RS26170 CP48_RS26225 SM00420 helix_turn_helix, Deoxyribose operon repressor CP48_RS26225 SM01134 CP48_RS26225 CP48_RS26250 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CP48_RS26260 SM01007 Class II Aldolase and Adducin N-terminal domain CP48_RS26315 SM00882 Coenzyme A transferase CP48_RS26395 SM01091 Transporter associated domain CP48_RS26425 SM00966 SpoVT / AbrB like domain CP48_RS26445 SM00382 ATPases associated with a variety of cellular activities CP48_RS26495 SM00642 Alpha-amylase domain CP48_RS26505 SM00354 helix_turn _helix lactose operon repressor CP48_RS26510 SM00831 Cation transporter/ATPase, N-terminus CP48_RS26545 SM00822 CP48_RS26545 CP48_RS26620 SM00354 helix_turn _helix lactose operon repressor CP48_RS26645 SM00829 Enoylreductase CP48_RS26765 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS26765 SM00895 CP48_RS26765 CP48_RS26865 SM00345 helix_turn_helix gluconate operon transcriptional repressor CP48_RS26895 SM00487 DEAD-like helicases superfamily CP48_RS26925 SM00833 Cobalamin synthesis protein cobW C-terminal domain CP48_RS26945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CP48_RS26945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS26945 SM00319 Homologues of the ligand binding domain of Tar CP48_RS26955 SM00895 CP48_RS26955 CP48_RS26960 SM00829 Enoylreductase CP48_RS26975 SM00382 ATPases associated with a variety of cellular activities CP48_RS27000 SM00421 helix_turn_helix, Lux Regulon CP48_RS27430 SM01252 CP48_RS27430 CP48_RS27440 SM00507 HNH nucleases CP48_RS27590 SM00635 Bacterial Ig-like domain 2 CP48_RS27620 SM00232 JAB/MPN domain CP48_RS27630 SM00060 Fibronectin type 3 domain CP48_RS27660 SM00749 bacterial OsmY and nodulation domain CP48_RS27695 SM01133 CP48_RS27695 CP48_RS27700 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CP48_RS27735 SM00382 ATPases associated with a variety of cellular activities CP48_RS27740 SM00530 Helix-turn-helix XRE-family like proteins CP48_RS27750 SM00382 ATPases associated with a variety of cellular activities CP48_RS27770 SM00855 Phosphoglycerate mutase family CP48_RS27775 SM00342 helix_turn_helix, arabinose operon control protein CP48_RS27775 SM00871 Bacterial transcription activator, effector binding domain CP48_RS27785 SM00448 cheY-homologous receiver domain CP48_RS27785 SM00862 Transcriptional regulatory protein, C terminal CP48_RS27790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CP48_RS27790 SM00387 Histidine kinase-like ATPases CP48_RS27790 SM00388 His Kinase A (phosphoacceptor) domain CP48_RS27800 SM00448 cheY-homologous receiver domain CP48_RS27800 SM00862 Transcriptional regulatory protein, C terminal