locus-tag class description BEN53_RS00005 PF03918 Cytochrome C biogenesis protein BEN53_RS00015 PF00375 Sodium:dicarboxylate symporter family BEN53_RS00020 PF08238 Sel1 repeat BEN53_RS00030 PF02321 Outer membrane efflux protein BEN53_RS00035 PF04632 Fusaric acid resistance protein family BEN53_RS00040 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS00040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS00045 PF17090 Uncharacterised protein family BEN53_RS00050 PF14863 Alkyl sulfatase dimerisation BEN53_RS00050 PF14864 Alkyl sulfatase C-terminal BEN53_RS00050 PF00753 Metallo-beta-lactamase superfamily BEN53_RS00055 PF00480 ROK family BEN53_RS00060 PF00834 Ribulose-phosphate 3 epimerase family BEN53_RS00065 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS00070 PF00005 ABC transporter BEN53_RS00075 PF13407 Periplasmic binding protein domain BEN53_RS00080 PF01380 SIS domain BEN53_RS00080 PF01418 Helix-turn-helix domain, rpiR family BEN53_RS00090 PF02502 Ribose/Galactose Isomerase BEN53_RS00100 PF12706 Beta-lactamase superfamily domain BEN53_RS00105 PF00583 Acetyltransferase (GNAT) family BEN53_RS00115 PF07969 Amidohydrolase family BEN53_RS00120 PF00005 ABC transporter BEN53_RS00125 PF00005 ABC transporter BEN53_RS00130 PF06007 Phosphonate metabolism protein PhnJ BEN53_RS00135 PF05861 Bacterial phosphonate metabolism protein (PhnI) BEN53_RS00140 PF05845 Bacterial phosphonate metabolism protein (PhnH) BEN53_RS00145 PF06754 Phosphonate metabolism protein PhnG BEN53_RS00150 PF07702 UTRA domain BEN53_RS00150 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS00155 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS00165 PF00005 ABC transporter BEN53_RS00170 PF06983 3-demethylubiquinone-9 3-methyltransferase BEN53_RS00175 PF08274 PhnA Zinc-Ribbon BEN53_RS00175 PF03831 PhnA domain BEN53_RS00185 PF00350 Dynamin family BEN53_RS00190 PF13990 YjcZ-like protein BEN53_RS00195 PF08946 Osmosensory transporter coiled coil BEN53_RS00195 PF00083 Sugar (and other) transporter BEN53_RS00205 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS00205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS00210 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS00210 PF00072 Response regulator receiver domain BEN53_RS00215 PF08019 Phosphoethanolamine transferase EptA/EptB BEN53_RS00215 PF00884 Sulfatase BEN53_RS00220 PF13520 Amino acid permease BEN53_RS00225 PF12833 Helix-turn-helix domain BEN53_RS00230 PF01276 Orn/Lys/Arg decarboxylase, major domain BEN53_RS00230 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BEN53_RS00230 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BEN53_RS00235 PF12833 Helix-turn-helix domain BEN53_RS00240 PF02056 Family 4 glycosyl hydrolase BEN53_RS00240 PF11975 Family 4 glycosyl hydrolase C-terminal domain BEN53_RS00245 PF09997 Predicted membrane protein (DUF2238) BEN53_RS00250 PF05681 Fumarate hydratase (Fumerase) BEN53_RS00250 PF05683 Fumarase C-terminus BEN53_RS00255 PF03605 Anaerobic c4-dicarboxylate membrane transporter BEN53_RS00265 PF00072 Response regulator receiver domain BEN53_RS00270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS00270 PF17203 Single cache domain 3 BEN53_RS00270 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BEN53_RS00270 PF00989 PAS fold BEN53_RS00275 PF06902 Divergent 4Fe-4S mono-cluster BEN53_RS00280 PF14542 GCN5-related N-acetyl-transferase BEN53_RS00285 PF11080 Endoribonuclease GhoS BEN53_RS00290 PF10753 Toxin GhoT_OrtT BEN53_RS00295 PF00152 tRNA synthetases class II (D, K and N) BEN53_RS00295 PF01336 OB-fold nucleic acid binding domain BEN53_RS00300 PF00854 POT family BEN53_RS00305 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BEN53_RS00305 PF01276 Orn/Lys/Arg decarboxylase, major domain BEN53_RS00305 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BEN53_RS00310 PF13520 Amino acid permease BEN53_RS00320 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS00320 PF18500 CadC C-terminal domain 1 BEN53_RS00345 PF06755 CbtA_toxin of type IV toxin-antitoxin system BEN53_RS00350 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A BEN53_RS00355 PF06174 Protein of unknown function (DUF987) BEN53_RS00360 PF04002 RadC-like JAB domain BEN53_RS00365 PF03230 Antirestriction protein BEN53_RS00370 PF06067 Domain of unknown function (DUF932) BEN53_RS00380 PF13018 Extended Signal Peptide of Type V secretion system BEN53_RS00380 PF16168 Adhesin of bacterial autotransporter system, probable stalk BEN53_RS00380 PF03797 Autotransporter beta-domain BEN53_RS00420 PF05321 Haemolysin expression modulating protein BEN53_RS00500 PF13737 Transposase DDE domain BEN53_RS00515 PF00072 Response regulator receiver domain BEN53_RS00520 PF17763 Glutaminase/Asparaginase C-terminal domain BEN53_RS00520 PF00710 Asparaginase, N-terminal BEN53_RS00525 PF03605 Anaerobic c4-dicarboxylate membrane transporter BEN53_RS00530 PF00206 Lyase BEN53_RS00530 PF10415 Fumarase C C-terminus BEN53_RS00535 PF07687 Peptidase dimerisation domain BEN53_RS00535 PF01546 Peptidase family M20/M25/M40 BEN53_RS00540 PF03606 C4-dicarboxylate anaerobic carrier BEN53_RS00545 PF01385 Probable transposase BEN53_RS00545 PF12323 Helix-turn-helix domain BEN53_RS00545 PF07282 Putative transposase DNA-binding domain BEN53_RS00565 PF01112 Asparaginase BEN53_RS00585 PF02308 MgtC family BEN53_RS00590 PF01156 Inosine-uridine preferring nucleoside hydrolase BEN53_RS00595 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS00600 PF07690 Major Facilitator Superfamily BEN53_RS00600 PF00083 Sugar (and other) transporter BEN53_RS00640 PF07729 FCD domain BEN53_RS00640 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS00645 PF05035 2-keto-3-deoxy-galactonokinase BEN53_RS00650 PF01081 KDPG and KHG aldolase BEN53_RS00655 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN53_RS00655 PF13378 Enolase C-terminal domain-like BEN53_RS00660 PF07690 Major Facilitator Superfamily BEN53_RS00680 PF03466 LysR substrate binding domain BEN53_RS00680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS00685 PF01177 Asp/Glu/Hydantoin racemase BEN53_RS00690 PF03605 Anaerobic c4-dicarboxylate membrane transporter BEN53_RS00695 PF10415 Fumarase C C-terminus BEN53_RS00695 PF00206 Lyase BEN53_RS00715 PF00589 Phage integrase family BEN53_RS00715 PF13356 Arm DNA-binding domain BEN53_RS00730 PF02683 Cytochrome C biogenesis protein transmembrane region BEN53_RS00730 PF11412 Disulphide bond corrector protein DsbC BEN53_RS00735 PF03091 CutA1 divalent ion tolerance protein BEN53_RS00740 PF03605 Anaerobic c4-dicarboxylate membrane transporter BEN53_RS00745 PF00206 Lyase BEN53_RS00745 PF10415 Fumarase C C-terminus BEN53_RS00750 PF04186 FxsA cytoplasmic membrane protein BEN53_RS00755 PF13520 Amino acid permease BEN53_RS00760 PF00166 Chaperonin 10 Kd subunit BEN53_RS00765 PF00118 TCP-1/cpn60 chaperonin family BEN53_RS00770 PF13698 Domain of unknown function (DUF4156) BEN53_RS00775 PF15922 YjeJ-like BEN53_RS00780 PF04055 Radical SAM superfamily BEN53_RS00785 PF08207 Elongation factor P (EF-P) KOW-like domain BEN53_RS00785 PF09285 Elongation factor P, C-terminal BEN53_RS00785 PF01132 Elongation factor P (EF-P) OB domain BEN53_RS00790 PF08085 Entericidin EcnA/B family BEN53_RS00795 PF08085 Entericidin EcnA/B family BEN53_RS00800 PF00893 Small Multidrug Resistance protein BEN53_RS00805 PF08212 Lipocalin-like domain BEN53_RS00815 PF02313 Fumarate reductase subunit D BEN53_RS00820 PF02300 Fumarate reductase subunit C BEN53_RS00825 PF13085 2Fe-2S iron-sulfur cluster binding domain BEN53_RS00825 PF13183 4Fe-4S dicluster domain BEN53_RS00830 PF02910 Fumarate reductase flavoprotein C-term BEN53_RS00830 PF00890 FAD binding domain BEN53_RS00835 PF00152 tRNA synthetases class II (D, K and N) BEN53_RS00840 PF13520 Amino acid permease BEN53_RS00860 PF10840 Protein of unknown function (DUF2645) BEN53_RS00865 PF00924 Mechanosensitive ion channel BEN53_RS00865 PF12795 Mechanosensitive ion channel porin domain BEN53_RS00865 PF12794 Mechanosensitive ion channel inner membrane domain 1 BEN53_RS00870 PF02666 Phosphatidylserine decarboxylase BEN53_RS00875 PF03193 RsgA GTPase BEN53_RS00880 PF00929 Exonuclease BEN53_RS00905 PF08331 Domain of unknown function (DUF1730) BEN53_RS00910 PF03853 YjeF-related protein N-terminus BEN53_RS00910 PF01256 Carbohydrate kinase BEN53_RS00915 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BEN53_RS00920 PF01520 N-acetylmuramoyl-L-alanine amidase BEN53_RS00925 PF01119 DNA mismatch repair protein, C-terminal domain BEN53_RS00925 PF08676 MutL C terminal dimerisation domain BEN53_RS00935 PF17209 Hfq protein BEN53_RS00940 PF13167 GTP-binding GTPase N-terminal BEN53_RS00940 PF16360 GTP-binding GTPase Middle Region BEN53_RS00940 PF01926 50S ribosome-binding GTPase BEN53_RS00945 PF01145 SPFH domain / Band 7 family BEN53_RS00945 PF12221 Bacterial membrane protein N terminal BEN53_RS00950 PF01145 SPFH domain / Band 7 family BEN53_RS00955 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) BEN53_RS00960 PF00709 Adenylosuccinate synthetase BEN53_RS00965 PF02082 Transcriptional regulator BEN53_RS00970 PF08206 Ribonuclease B OB domain BEN53_RS00970 PF17876 Cold shock domain BEN53_RS00970 PF08461 Ribonuclease R winged-helix domain BEN53_RS00970 PF00773 RNB domain BEN53_RS00970 PF00575 S1 RNA binding domain BEN53_RS00975 PF00588 SpoU rRNA Methylase family BEN53_RS00975 PF08032 RNA 2'-O ribose methyltransferase substrate binding BEN53_RS00980 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) BEN53_RS00985 PF04012 PspA/IM30 family BEN53_RS00990 PF10679 Protein of unknown function (DUF2491) BEN53_RS00995 PF03994 Domain of Unknown Function (DUF350) BEN53_RS01000 PF06693 Protein of unknown function (DUF1190) BEN53_RS01005 PF03738 Glutathionylspermidine synthase preATP-grasp BEN53_RS01010 PF02770 Acyl-CoA dehydrogenase, middle domain BEN53_RS01010 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BEN53_RS01010 PF18158 Adaptive response protein AidB N-terminal domain BEN53_RS01015 PF07338 Protein of unknown function (DUF1471) BEN53_RS01020 PF07338 Protein of unknown function (DUF1471) BEN53_RS01025 PF00326 Prolyl oligopeptidase family BEN53_RS01030 PF08220 DeoR-like helix-turn-helix domain BEN53_RS01030 PF00455 DeoR C terminal sensor domain BEN53_RS01040 PF03611 PTS system sugar-specific permease component BEN53_RS01045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS01050 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS01055 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BEN53_RS01060 PF01261 Xylose isomerase-like TIM barrel BEN53_RS01065 PF00596 Class II Aldolase and Adducin N-terminal domain BEN53_RS01070 PF07338 Protein of unknown function (DUF1471) BEN53_RS01075 PF01250 Ribosomal protein S6 BEN53_RS01080 PF00436 Single-strand binding protein family BEN53_RS01085 PF01084 Ribosomal protein S18 BEN53_RS01090 PF03948 Ribosomal protein L9, C-terminal domain BEN53_RS01090 PF01281 Ribosomal protein L9, N-terminal domain BEN53_RS01095 PF03480 Bacterial extracellular solute-binding protein, family 7 BEN53_RS01100 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BEN53_RS01105 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BEN53_RS01110 PF02910 Fumarate reductase flavoprotein C-term BEN53_RS01110 PF00890 FAD binding domain BEN53_RS01115 PF01144 Coenzyme A transferase BEN53_RS01120 PF00378 Enoyl-CoA hydratase/isomerase BEN53_RS01135 PF17938 Tetracyclin repressor-like, C-terminal domain BEN53_RS01140 PF08525 Opacity-associated protein A N-terminal motif BEN53_RS01140 PF04225 Opacity-associated protein A LysM-like domain BEN53_RS01145 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BEN53_RS01145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BEN53_RS01150 PF00324 Amino acid permease BEN53_RS01155 PF04405 Domain of Unknown function (DUF542) BEN53_RS01155 PF01814 Hemerythrin HHE cation binding domain BEN53_RS01160 PF00892 EamA-like transporter family BEN53_RS01165 PF05368 NmrA-like family BEN53_RS01170 PF01638 HxlR-like helix-turn-helix BEN53_RS01175 PF02872 5'-nucleotidase, C-terminal domain BEN53_RS01175 PF00149 Calcineurin-like phosphoesterase BEN53_RS01180 PF00459 Inositol monophosphatase family BEN53_RS01185 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) BEN53_RS01190 PF06526 Protein of unknown function (DUF1107) BEN53_RS01195 PF01595 Cyclin M transmembrane N-terminal domain BEN53_RS01195 PF03471 Transporter associated domain BEN53_RS01195 PF00571 CBS domain BEN53_RS01200 PF01625 Peptide methionine sulfoxide reductase BEN53_RS01210 PF07244 Surface antigen variable number repeat BEN53_RS01210 PF17243 POTRA domain TamA domain 1 BEN53_RS01210 PF01103 Surface antigen BEN53_RS01215 PF04357 TamB, inner membrane protein subunit of TAM complex BEN53_RS01220 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like BEN53_RS01225 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BEN53_RS01230 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BEN53_RS01235 PF00719 Inorganic pyrophosphatase BEN53_RS01240 PF13407 Periplasmic binding protein domain BEN53_RS01245 PF00005 ABC transporter BEN53_RS01250 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS01255 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS01260 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BEN53_RS01265 PF02875 Mur ligase family, glutamate ligase domain BEN53_RS01265 PF08245 Mur ligase middle domain BEN53_RS01265 PF01225 Mur ligase family, catalytic domain BEN53_RS01270 PF04751 Protein of unknown function (DUF615) BEN53_RS01275 PF01523 Putative modulator of DNA gyrase BEN53_RS01280 PF07361 Cytochrome b562 BEN53_RS01290 PF04221 RelB antitoxin BEN53_RS01295 PF05016 ParE toxin of type II toxin-antitoxin system, parDE BEN53_RS01305 PF03477 ATP cone domain BEN53_RS01305 PF13597 Anaerobic ribonucleoside-triphosphate reductase BEN53_RS01310 PF00128 Alpha amylase, catalytic domain BEN53_RS01310 PF11941 Domain of unknown function (DUF3459) BEN53_RS01315 PF02378 Phosphotransferase system, EIIC BEN53_RS01315 PF00367 phosphotransferase system, EIIB BEN53_RS01320 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS01325 PF17059 MgtA leader peptide BEN53_RS01330 PF00690 Cation transporter/ATPase, N-terminus BEN53_RS01330 PF00689 Cation transporting ATPase, C-terminus BEN53_RS01335 PF01042 Endoribonuclease L-PSP BEN53_RS01340 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BEN53_RS01340 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BEN53_RS01345 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEN53_RS01345 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEN53_RS01350 PF08052 PyrBI operon leader peptide BEN53_RS01360 PF01042 Endoribonuclease L-PSP BEN53_RS01370 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS01375 PF04074 YhcH/YjgK/YiaL BEN53_RS01385 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEN53_RS01385 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEN53_RS01390 PF06877 Regulator of ribonuclease activity B BEN53_RS01395 PF00583 Acetyltransferase (GNAT) family BEN53_RS01400 PF05987 Bacterial protein of unknown function (DUF898) BEN53_RS01405 PF08264 Anticodon-binding domain of tRNA BEN53_RS01405 PF10458 Valyl tRNA synthetase tRNA binding arm BEN53_RS01405 PF00133 tRNA synthetases class I (I, L, M and V) BEN53_RS01410 PF04364 DNA polymerase III chi subunit, HolC BEN53_RS01415 PF02789 Cytosol aminopeptidase family, N-terminal domain BEN53_RS01415 PF00883 Cytosol aminopeptidase family, catalytic domain BEN53_RS01420 PF03739 Lipopolysaccharide export system permease LptF/LptG BEN53_RS01425 PF03739 Lipopolysaccharide export system permease LptF/LptG BEN53_RS01430 PF05872 Bacterial protein of unknown function (DUF853) BEN53_RS01435 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS01440 PF02447 GntP family permease BEN53_RS01445 PF00106 short chain dehydrogenase BEN53_RS01450 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS01450 PF00107 Zinc-binding dehydrogenase BEN53_RS01455 PF01202 Shikimate kinase BEN53_RS01460 PF00107 Zinc-binding dehydrogenase BEN53_RS01460 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS01480 PF02796 Helix-turn-helix domain of resolvase BEN53_RS01480 PF00239 Resolvase, N terminal domain BEN53_RS01545 PF00075 RNase H BEN53_RS01555 PF13091 PLD-like domain BEN53_RS01555 PF13087 AAA domain BEN53_RS01565 PF13676 TIR domain BEN53_RS01570 PF02384 N-6 DNA Methylase BEN53_RS01575 PF12161 HsdM N-terminal domain BEN53_RS01575 PF02384 N-6 DNA Methylase BEN53_RS01585 PF18766 SWI2/SNF2 ATPase BEN53_RS01585 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) BEN53_RS01585 PF11867 Domain of unknown function (DUF3387) BEN53_RS01590 PF01420 Type I restriction modification DNA specificity domain BEN53_RS01605 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase BEN53_RS01615 PF06178 Oligogalacturonate-specific porin protein (KdgM) BEN53_RS01630 PF00589 Phage integrase family BEN53_RS01635 PF00589 Phage integrase family BEN53_RS01645 PF00419 Fimbrial protein BEN53_RS01650 PF00419 Fimbrial protein BEN53_RS01655 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS01655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS01660 PF13953 PapC C-terminal domain BEN53_RS01660 PF13954 PapC N-terminal domain BEN53_RS01660 PF00577 Outer membrane usher protein BEN53_RS01665 PF00419 Fimbrial protein BEN53_RS01675 PF09160 FimH, mannose binding BEN53_RS01675 PF00419 Fimbrial protein BEN53_RS01680 PF02447 GntP family permease BEN53_RS01690 PF03786 D-mannonate dehydratase (UxuA) BEN53_RS01695 PF08125 Mannitol dehydrogenase C-terminal domain BEN53_RS01695 PF01232 Mannitol dehydrogenase Rossmann domain BEN53_RS01705 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS01705 PF07729 FCD domain BEN53_RS01710 PF10887 Protein of unknown function (DUF2686) BEN53_RS01720 PF04965 Gene 25-like lysozyme BEN53_RS01725 PF03466 LysR substrate binding domain BEN53_RS01725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS01730 PF01979 Amidohydrolase family BEN53_RS01735 PF07670 Nucleoside recognition BEN53_RS01740 PF07670 Nucleoside recognition BEN53_RS01750 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family BEN53_RS01755 PF06779 Uncharacterised MFS-type transporter YbfB BEN53_RS01760 PF06977 SdiA-regulated BEN53_RS01765 PF11823 Protein of unknown function (DUF3343) BEN53_RS01770 PF01869 BadF/BadG/BcrA/BcrD ATPase family BEN53_RS01775 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component BEN53_RS01780 PF04286 Protein of unknown function (DUF445) BEN53_RS01785 PF07690 Major Facilitator Superfamily BEN53_RS01800 PF04754 Putative transposase, YhgA-like BEN53_RS01805 PF00155 Aminotransferase class I and II BEN53_RS01805 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS01810 PF06568 Domain of unknown function (DUF1127) BEN53_RS01815 PF08845 Toxin SymE, type I toxin-antitoxin system BEN53_RS01830 PF14338 Mrr N-terminal domain BEN53_RS01830 PF04471 Restriction endonuclease BEN53_RS01845 PF07683 Cobalamin synthesis protein cobW C-terminal domain BEN53_RS01845 PF02492 CobW/HypB/UreG, nucleotide-binding domain BEN53_RS01850 PF04328 Selenoprotein, putative BEN53_RS01855 PF13722 5TM C-terminal transporter carbon starvation CstA BEN53_RS01855 PF02554 Carbon starvation protein CstA BEN53_RS01875 PF07969 Amidohydrolase family BEN53_RS01885 PF00474 Sodium:solute symporter family BEN53_RS01890 PF02685 Glucokinase BEN53_RS01890 PF01418 Helix-turn-helix domain, rpiR family BEN53_RS01890 PF01380 SIS domain BEN53_RS01895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN53_RS01895 PF00672 HAMP domain BEN53_RS01895 PF02203 Tar ligand binding domain homologue BEN53_RS01900 PF07690 Major Facilitator Superfamily BEN53_RS01905 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS01905 PF07729 FCD domain BEN53_RS01910 PF00107 Zinc-binding dehydrogenase BEN53_RS01910 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS01915 PF00884 Sulfatase BEN53_RS01920 PF10696 Protein of unknown function (DUF2501) BEN53_RS01925 PF01695 IstB-like ATP binding protein BEN53_RS01930 PF17948 DnaT DNA-binding domain BEN53_RS01935 PF12821 Threonine/Serine exporter, ThrE BEN53_RS01940 PF06738 Putative threonine/serine exporter BEN53_RS01945 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS01950 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS01955 PF06276 Ferric iron reductase FhuF-like transporter BEN53_RS01955 PF11575 FhuF 2Fe-2S C-terminal domain BEN53_RS01960 PF07256 Protein of unknown function (DUF1435) BEN53_RS01980 PF08468 Methyltransferase small domain N-terminal BEN53_RS01980 PF05175 Methyltransferase small domain BEN53_RS01985 PF03603 DNA polymerase III psi subunit BEN53_RS01990 PF00583 Acetyltransferase (GNAT) family BEN53_RS01995 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS02000 PF16658 Class II release factor RF3, C-terminal domain BEN53_RS02000 PF00009 Elongation factor Tu GTP binding domain BEN53_RS02000 PF03144 Elongation factor Tu domain 2 BEN53_RS02005 PF04972 BON domain BEN53_RS02010 PF07043 Protein of unknown function (DUF1328) BEN53_RS02015 PF01734 Patatin-like phospholipase BEN53_RS02020 PF01026 TatD related DNase BEN53_RS02025 PF04055 Radical SAM superfamily BEN53_RS02030 PF11230 Protein of unknown function (DUF3029) BEN53_RS02035 PF01791 DeoC/LacD family aldolase BEN53_RS02040 PF00591 Glycosyl transferase family, a/b domain BEN53_RS02040 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BEN53_RS02040 PF02885 Glycosyl transferase family, helical bundle domain BEN53_RS02045 PF01676 Metalloenzyme superfamily BEN53_RS02050 PF01048 Phosphorylase superfamily BEN53_RS02060 PF03099 Biotin/lipoate A/B protein ligase family BEN53_RS02060 PF10437 Bacterial lipoate protein ligase C-terminus BEN53_RS02065 PF10144 Bacterial virulence factor haemolysin BEN53_RS02070 PF18429 Domain of unknown function (DUF5609) BEN53_RS02075 PF18073 Rubredoxin metal binding domain BEN53_RS02080 PF01381 Helix-turn-helix BEN53_RS02080 PF13521 AAA domain BEN53_RS02085 PF12848 ABC transporter BEN53_RS02085 PF00005 ABC transporter BEN53_RS02095 PF01464 Transglycosylase SLT domain BEN53_RS02095 PF14718 Soluble lytic murein transglycosylase L domain BEN53_RS02100 PF01371 Trp repressor protein BEN53_RS02105 PF01931 Protein of unknown function DUF84 BEN53_RS02110 PF00300 Histidine phosphatase superfamily (branch 1) BEN53_RS02115 PF12833 Helix-turn-helix domain BEN53_RS02115 PF06445 GyrI-like small molecule binding domain BEN53_RS02120 PF05981 CreA protein BEN53_RS02125 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS02125 PF00072 Response regulator receiver domain BEN53_RS02130 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS02130 PF00672 HAMP domain BEN53_RS02130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS02135 PF06123 Inner membrane protein CreD BEN53_RS02140 PF00072 Response regulator receiver domain BEN53_RS02140 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS02150 PF00588 SpoU rRNA Methylase family BEN53_RS02160 PF00696 Amino acid kinase family BEN53_RS02160 PF03447 Homoserine dehydrogenase, NAD binding domain BEN53_RS02160 PF01842 ACT domain BEN53_RS02160 PF13840 ACT domain BEN53_RS02160 PF00742 Homoserine dehydrogenase BEN53_RS02165 PF00288 GHMP kinases N terminal domain BEN53_RS02165 PF08544 GHMP kinases C terminal BEN53_RS02170 PF00291 Pyridoxal-phosphate dependent enzyme BEN53_RS02170 PF14821 Threonine synthase N terminus BEN53_RS02175 PF10697 Protein of unknown function (DUF2502) BEN53_RS02180 PF03883 Peroxide stress protein YaaA BEN53_RS02185 PF01235 Sodium:alanine symporter family BEN53_RS02190 PF00923 Transaldolase/Fructose-6-phosphate aldolase BEN53_RS02195 PF00994 Probable molybdopterin binding domain BEN53_RS02200 PF01184 GPR1/FUN34/yaaH family BEN53_RS02205 PF03981 Ubiquinol-cytochrome C chaperone BEN53_RS02205 PF13099 Domain of unknown function (DUF3944) BEN53_RS02210 PF10807 Protein of unknown function (DUF2541) BEN53_RS02215 PF00012 Hsp70 protein BEN53_RS02220 PF01556 DnaJ C terminal domain BEN53_RS02220 PF00684 DnaJ central domain BEN53_RS02220 PF00226 DnaJ domain BEN53_RS02225 PF01848 Hok/gef family BEN53_RS02235 PF00884 Sulfatase BEN53_RS02235 PF16385 Domain of unknown function BEN53_RS02245 PF06965 Na+/H+ antiporter 1 BEN53_RS02250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS02250 PF03466 LysR substrate binding domain BEN53_RS02260 PF13936 Helix-turn-helix domain BEN53_RS02260 PF00665 Integrase core domain BEN53_RS02275 PF01649 Ribosomal protein S20 BEN53_RS02280 PF10837 Protein of unknown function (DUF2575) BEN53_RS02285 PF01687 Riboflavin kinase BEN53_RS02285 PF06574 FAD synthetase BEN53_RS02290 PF08264 Anticodon-binding domain of tRNA BEN53_RS02290 PF00133 tRNA synthetases class I (I, L, M and V) BEN53_RS02290 PF06827 Zinc finger found in FPG and IleRS BEN53_RS02295 PF01252 Signal peptidase (SPase) II BEN53_RS02300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BEN53_RS02305 PF02401 LytB protein BEN53_RS02310 PF01156 Inosine-uridine preferring nucleoside hydrolase BEN53_RS02315 PF05173 Dihydrodipicolinate reductase, C-terminus BEN53_RS02315 PF01113 Dihydrodipicolinate reductase, N-terminus BEN53_RS02325 PF00117 Glutamine amidotransferase class-I BEN53_RS02325 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BEN53_RS02330 PF02142 MGS-like domain BEN53_RS02330 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BEN53_RS02330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BEN53_RS02340 PF07180 CaiF/GrlA transcriptional regulator BEN53_RS02345 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS02350 PF00378 Enoyl-CoA hydratase/isomerase BEN53_RS02355 PF00501 AMP-binding enzyme BEN53_RS02355 PF13193 AMP-binding enzyme C-terminal domain BEN53_RS02360 PF02515 CoA-transferase family III BEN53_RS02365 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BEN53_RS02365 PF02770 Acyl-CoA dehydrogenase, middle domain BEN53_RS02365 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BEN53_RS02370 PF02028 BCCT, betaine/carnitine/choline family transporter BEN53_RS02375 PF01012 Electron transfer flavoprotein domain BEN53_RS02380 PF00766 Electron transfer flavoprotein FAD-binding domain BEN53_RS02380 PF01012 Electron transfer flavoprotein domain BEN53_RS02385 PF01494 FAD binding domain BEN53_RS02395 PF00083 Sugar (and other) transporter BEN53_RS02400 PF02525 Flavodoxin-like fold BEN53_RS02405 PF02254 TrkA-N domain BEN53_RS02405 PF00999 Sodium/hydrogen exchanger family BEN53_RS02410 PF00186 Dihydrofolate reductase BEN53_RS02430 PF00149 Calcineurin-like phosphoesterase BEN53_RS02435 PF04379 ApaG domain BEN53_RS02440 PF00398 Ribosomal RNA adenine dimethylase BEN53_RS02445 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BEN53_RS02450 PF00639 PPIC-type PPIASE domain BEN53_RS02450 PF09312 SurA N-terminal domain BEN53_RS02455 PF03968 OstA-like protein BEN53_RS02455 PF04453 LPS transport system D BEN53_RS02460 PF05099 Tellurite resistance protein TerB BEN53_RS02460 PF00226 DnaJ domain BEN53_RS02465 PF01548 Transposase BEN53_RS02465 PF02371 Transposase IS116/IS110/IS902 family BEN53_RS02475 PF00849 RNA pseudouridylate synthase BEN53_RS02480 PF12137 RNA polymerase recycling family C-terminal BEN53_RS02480 PF18337 RapA N-terminal Tudor like domain BEN53_RS02480 PF00271 Helicase conserved C-terminal domain BEN53_RS02480 PF00176 SNF2 family N-terminal domain BEN53_RS02480 PF18339 RapA N-terminal Tudor like domain 1 BEN53_RS02485 PF00136 DNA polymerase family B BEN53_RS02485 PF03104 DNA polymerase family B, exonuclease domain BEN53_RS02490 PF00596 Class II Aldolase and Adducin N-terminal domain BEN53_RS02495 PF02610 L-arabinose isomerase BEN53_RS02495 PF11762 L-arabinose isomerase C-terminal domain BEN53_RS02500 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN53_RS02510 PF02311 AraC-like ligand binding domain BEN53_RS02510 PF12833 Helix-turn-helix domain BEN53_RS02525 PF09335 SNARE associated Golgi protein BEN53_RS02530 PF00005 ABC transporter BEN53_RS02535 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS02550 PF12793 Sugar transport-related sRNA regulator N-term BEN53_RS02550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS02560 PF00694 Aconitase C-terminal domain BEN53_RS02565 PF00330 Aconitase family (aconitate hydratase) BEN53_RS02570 PF00180 Isocitrate/isopropylmalate dehydrogenase BEN53_RS02575 PF08502 LeuA allosteric (dimerisation) domain BEN53_RS02575 PF00682 HMGL-like BEN53_RS02580 PF08054 Leucine operon leader peptide BEN53_RS02585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS02585 PF03466 LysR substrate binding domain BEN53_RS02590 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN53_RS02590 PF00205 Thiamine pyrophosphate enzyme, central domain BEN53_RS02590 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN53_RS02595 PF10369 Small subunit of acetolactate synthase BEN53_RS02605 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BEN53_RS02605 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS02615 PF02381 MraZ protein, putative antitoxin-like BEN53_RS02620 PF01795 MraW methylase family BEN53_RS02625 PF04999 Cell division protein FtsL BEN53_RS02630 PF00905 Penicillin binding protein transpeptidase domain BEN53_RS02630 PF03717 Penicillin-binding Protein dimerisation domain BEN53_RS02635 PF02875 Mur ligase family, glutamate ligase domain BEN53_RS02635 PF01225 Mur ligase family, catalytic domain BEN53_RS02635 PF08245 Mur ligase middle domain BEN53_RS02640 PF02875 Mur ligase family, glutamate ligase domain BEN53_RS02640 PF01225 Mur ligase family, catalytic domain BEN53_RS02640 PF08245 Mur ligase middle domain BEN53_RS02645 PF00953 Glycosyl transferase family 4 BEN53_RS02645 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BEN53_RS02650 PF08245 Mur ligase middle domain BEN53_RS02650 PF02875 Mur ligase family, glutamate ligase domain BEN53_RS02655 PF01098 Cell cycle protein BEN53_RS02660 PF04101 Glycosyltransferase family 28 C-terminal domain BEN53_RS02660 PF03033 Glycosyltransferase family 28 N-terminal domain BEN53_RS02665 PF08245 Mur ligase middle domain BEN53_RS02665 PF02875 Mur ligase family, glutamate ligase domain BEN53_RS02665 PF01225 Mur ligase family, catalytic domain BEN53_RS02670 PF07478 D-ala D-ala ligase C-terminus BEN53_RS02670 PF01820 D-ala D-ala ligase N-terminus BEN53_RS02675 PF08478 POTRA domain, FtsQ-type BEN53_RS02675 PF03799 Cell division protein FtsQ BEN53_RS02680 PF02491 SHS2 domain inserted in FTSA BEN53_RS02685 PF12327 FtsZ family, C-terminal domain BEN53_RS02685 PF00091 Tubulin/FtsZ family, GTPase domain BEN53_RS02690 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BEN53_RS02695 PF06558 Secretion monitor precursor protein (SecM) BEN53_RS02700 PF01043 SecA preprotein cross-linking domain BEN53_RS02700 PF02810 SEC-C motif BEN53_RS02700 PF07516 SecA Wing and Scaffold domain BEN53_RS02700 PF07517 SecA DEAD-like domain BEN53_RS02705 PF00293 NUDIX domain BEN53_RS02710 PF03884 DNA gyrase inhibitor YacG BEN53_RS02715 PF07072 Cell division protein BEN53_RS02720 PF01121 Dephospho-CoA kinase BEN53_RS02725 PF00478 IMP dehydrogenase / GMP reductase domain BEN53_RS02730 PF00482 Type II secretion system (T2SS), protein F BEN53_RS02735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BEN53_RS02735 PF00437 Type II/IV secretion system protein BEN53_RS02740 PF07963 Prokaryotic N-terminal methylation motif BEN53_RS02750 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BEN53_RS02750 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BEN53_RS02755 PF01510 N-acetylmuramoyl-L-alanine amidase BEN53_RS02760 PF17113 Regulatory signalling modulator protein AmpE BEN53_RS02765 PF00324 Amino acid permease BEN53_RS02770 PF07729 FCD domain BEN53_RS02770 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS02780 PF17831 Pyruvate dehydrogenase E1 component middle domain BEN53_RS02780 PF00456 Transketolase, thiamine diphosphate binding domain BEN53_RS02785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BEN53_RS02785 PF00364 Biotin-requiring enzyme BEN53_RS02785 PF02817 e3 binding domain BEN53_RS02790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEN53_RS02790 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS02795 PF02371 Transposase IS116/IS110/IS902 family BEN53_RS02795 PF01548 Transposase BEN53_RS02805 PF11737 Protein of unknown function (DUF3300) BEN53_RS02815 PF11791 Aconitate B N-terminal domain BEN53_RS02815 PF06434 Aconitate hydratase 2 N-terminus BEN53_RS02815 PF00330 Aconitase family (aconitate hydratase) BEN53_RS02820 PF06062 Uncharacterised protein family (UPF0231) BEN53_RS02825 PF02675 S-adenosylmethionine decarboxylase BEN53_RS02830 PF17284 Spermidine synthase tetramerisation domain BEN53_RS02835 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) BEN53_RS02840 PF07732 Multicopper oxidase BEN53_RS02840 PF00394 Multicopper oxidase BEN53_RS02840 PF07731 Multicopper oxidase BEN53_RS02845 PF01011 PQQ enzyme repeat BEN53_RS02850 PF00156 Phosphoribosyl transferase domain BEN53_RS02855 PF00484 Carbonic anhydrase BEN53_RS02860 PF00005 ABC transporter BEN53_RS02865 PF01061 ABC-2 type transporter BEN53_RS02870 PF03610 PTS system fructose IIA component BEN53_RS02875 PF01522 Polysaccharide deacetylase BEN53_RS02880 PF02261 Aspartate decarboxylase BEN53_RS02895 PF04754 Putative transposase, YhgA-like BEN53_RS02905 PF02569 Pantoate-beta-alanine ligase BEN53_RS02910 PF02548 Ketopantoate hydroxymethyltransferase BEN53_RS02915 PF00419 Fimbrial protein BEN53_RS02920 PF00419 Fimbrial protein BEN53_RS02925 PF00419 Fimbrial protein BEN53_RS02930 PF00419 Fimbrial protein BEN53_RS02935 PF13953 PapC C-terminal domain BEN53_RS02935 PF13954 PapC N-terminal domain BEN53_RS02935 PF00577 Outer membrane usher protein BEN53_RS02940 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS02940 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS02945 PF00419 Fimbrial protein BEN53_RS02950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BEN53_RS02955 PF01743 Poly A polymerase head domain BEN53_RS02955 PF12626 Polymerase A arginine-rich C-terminus BEN53_RS02955 PF12627 Probable RNA and SrmB- binding site of polymerase A BEN53_RS02960 PF00749 tRNA synthetases class I (E and Q), catalytic domain BEN53_RS02965 PF01258 Prokaryotic dksA/traR C4-type zinc finger BEN53_RS02970 PF17746 SfsA N-terminal OB domain BEN53_RS02970 PF03749 Sugar fermentation stimulation protein RE domain BEN53_RS02975 PF02834 LigT like Phosphoesterase BEN53_RS02980 PF08482 ATP-dependent helicase C-terminal BEN53_RS02980 PF00271 Helicase conserved C-terminal domain BEN53_RS02980 PF04408 Helicase associated domain (HA2) BEN53_RS02980 PF00270 DEAD/DEAH box helicase BEN53_RS02985 PF00912 Transglycosylase BEN53_RS02985 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal BEN53_RS02985 PF00905 Penicillin binding protein transpeptidase domain BEN53_RS02985 PF14814 Bifunctional transglycosylase second domain BEN53_RS02990 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS02990 PF00593 TonB dependent receptor BEN53_RS02995 PF00005 ABC transporter BEN53_RS03000 PF01497 Periplasmic binding protein BEN53_RS03005 PF01032 FecCD transport family BEN53_RS03010 PF00202 Aminotransferase class-III BEN53_RS03015 PF00654 Voltage gated chloride channel BEN53_RS03020 PF01521 Iron-sulphur cluster biosynthesis BEN53_RS03025 PF03458 UPF0126 domain BEN53_RS03030 PF01497 Periplasmic binding protein BEN53_RS03035 PF01048 Phosphorylase superfamily BEN53_RS03040 PF01966 HD domain BEN53_RS03040 PF13286 Phosphohydrolase-associated domain BEN53_RS03050 PF00595 PDZ domain BEN53_RS03055 PF17853 GGDEF-like domain BEN53_RS03055 PF05651 Putative sugar diacid recognition BEN53_RS03055 PF13556 PucR C-terminal helix-turn-helix domain BEN53_RS03060 PF11944 Protein of unknown function (DUF3461) BEN53_RS03065 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BEN53_RS03065 PF14602 Hexapeptide repeat of succinyl-transferase BEN53_RS03065 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS03070 PF01966 HD domain BEN53_RS03070 PF01909 Nucleotidyltransferase domain BEN53_RS03070 PF08335 GlnD PII-uridylyltransferase BEN53_RS03070 PF01842 ACT domain BEN53_RS03075 PF00557 Metallopeptidase family M24 BEN53_RS03085 PF00318 Ribosomal protein S2 BEN53_RS03090 PF00889 Elongation factor TS BEN53_RS03095 PF00696 Amino acid kinase family BEN53_RS03100 PF01765 Ribosome recycling factor BEN53_RS03105 PF13288 DXP reductoisomerase C-terminal domain BEN53_RS03105 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BEN53_RS03105 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BEN53_RS03110 PF01255 Putative undecaprenyl diphosphate synthase BEN53_RS03120 PF02163 Peptidase family M50 BEN53_RS03120 PF17820 PDZ domain BEN53_RS03125 PF07244 Surface antigen variable number repeat BEN53_RS03125 PF01103 Surface antigen BEN53_RS03130 PF03938 Outer membrane protein (OmpH-like) BEN53_RS03135 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS03135 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BEN53_RS03140 PF07977 FabA-like domain BEN53_RS03145 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS03145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BEN53_RS03150 PF02684 Lipid-A-disaccharide synthetase BEN53_RS03155 PF01351 Ribonuclease HII BEN53_RS03160 PF07733 Bacterial DNA polymerase III alpha NTPase domain BEN53_RS03160 PF01336 OB-fold nucleic acid binding domain BEN53_RS03160 PF02811 PHP domain BEN53_RS03160 PF14579 Helix-hairpin-helix motif BEN53_RS03160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BEN53_RS03165 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BEN53_RS03170 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BEN53_RS03170 PF01276 Orn/Lys/Arg decarboxylase, major domain BEN53_RS03170 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BEN53_RS03175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN53_RS03180 PF09179 TilS substrate binding domain BEN53_RS03180 PF01171 PP-loop family BEN53_RS03180 PF11734 TilS substrate C-terminal domain BEN53_RS03185 PF07073 Modulator of Rho-dependent transcription termination (ROF) BEN53_RS03190 PF06786 Uncharacterised protein family (UPF0253) BEN53_RS03195 PF07152 YaeQ protein BEN53_RS03200 PF00472 RF-1 domain BEN53_RS03205 PF17185 NlpE C-terminal OB domain BEN53_RS03205 PF04170 NlpE N-terminal domain BEN53_RS03210 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family BEN53_RS03215 PF04073 Aminoacyl-tRNA editing domain BEN53_RS03215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEN53_RS03215 PF03129 Anticodon binding domain BEN53_RS03220 PF18389 TrmO C-terminal domain BEN53_RS03220 PF01980 tRNA-methyltransferase O BEN53_RS03225 PF16358 RcsF lipoprotein BEN53_RS03230 PF03180 NLPA lipoprotein BEN53_RS03235 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS03240 PF09383 NIL domain BEN53_RS03240 PF00005 ABC transporter BEN53_RS03280 PF00248 Aldo/keto reductase family BEN53_RS03285 PF03466 LysR substrate binding domain BEN53_RS03285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS03290 PF03372 Endonuclease/Exonuclease/phosphatase family BEN53_RS03295 PF08241 Methyltransferase domain BEN53_RS03300 PF01464 Transglycosylase SLT domain BEN53_RS03300 PF01476 LysM domain BEN53_RS03305 PF00753 Metallo-beta-lactamase superfamily BEN53_RS03305 PF16123 Hydroxyacylglutathione hydrolase C-terminus BEN53_RS03310 PF08241 Methyltransferase domain BEN53_RS03315 PF00075 RNase H BEN53_RS03320 PF00929 Exonuclease BEN53_RS03335 PF00795 Carbon-nitrogen hydrolase BEN53_RS03345 PF02770 Acyl-CoA dehydrogenase, middle domain BEN53_RS03345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BEN53_RS03345 PF09317 Domain of unknown function (DUF1974) BEN53_RS03345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BEN53_RS03350 PF13580 SIS domain BEN53_RS03355 PF13230 Glutamine amidotransferases class-II BEN53_RS03360 PF03734 L,D-transpeptidase catalytic domain BEN53_RS03365 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ BEN53_RS03370 PF04221 RelB antitoxin BEN53_RS03375 PF00877 NlpC/P60 family BEN53_RS03385 PF00771 FHIPEP family BEN53_RS03390 PF13677 Membrane MotB of proton-channel complex MotA/MotB BEN53_RS03390 PF00691 OmpA family BEN53_RS03395 PF11799 impB/mucB/samB family C-terminal domain BEN53_RS03395 PF00817 impB/mucB/samB family BEN53_RS03395 PF11798 IMS family HHH motif BEN53_RS03400 PF13673 Acetyltransferase (GNAT) domain BEN53_RS03410 PF00472 RF-1 domain BEN53_RS03425 PF01546 Peptidase family M20/M25/M40 BEN53_RS03425 PF07687 Peptidase dimerisation domain BEN53_RS03430 PF00156 Phosphoribosyl transferase domain BEN53_RS03435 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) BEN53_RS03440 PF07417 Sigma factor-binding transcriptional regulator Crl BEN53_RS03445 PF00267 Gram-negative porin BEN53_RS03450 PF00696 Amino acid kinase family BEN53_RS03450 PF01472 PUA domain BEN53_RS03455 PF00171 Aldehyde dehydrogenase family BEN53_RS03545 PF07274 Protein of unknown function (DUF1440) BEN53_RS03550 PF03692 Putative zinc- or iron-chelating domain BEN53_RS03565 PF15976 CS1-pili formation C-terminal BEN53_RS03565 PF16967 E-set like domain BEN53_RS03570 PF18649 EcpB C-terminal domain BEN53_RS03575 PF16449 Fimbrillin MatB BEN53_RS03580 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS03595 PF00444 Ribosomal protein L36 BEN53_RS03600 PF01197 Ribosomal protein L31 BEN53_RS03615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BEN53_RS03620 PF12146 Serine aminopeptidase, S33 BEN53_RS03625 PF03466 LysR substrate binding domain BEN53_RS03625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS03630 PF03466 LysR substrate binding domain BEN53_RS03630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS03635 PF00248 Aldo/keto reductase family BEN53_RS03640 PF00248 Aldo/keto reductase family BEN53_RS03645 PF11924 Inverse autotransporter, beta-domain BEN53_RS03655 PF12833 Helix-turn-helix domain BEN53_RS03660 PF00248 Aldo/keto reductase family BEN53_RS03665 PF04224 Protein of unknown function, DUF417 BEN53_RS03670 PF07338 Protein of unknown function (DUF1471) BEN53_RS03675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEN53_RS03675 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS03680 PF12852 Cupin BEN53_RS03680 PF12833 Helix-turn-helix domain BEN53_RS03685 PF02754 Cysteine-rich domain BEN53_RS03690 PF02589 LUD domain BEN53_RS03690 PF13183 4Fe-4S dicluster domain BEN53_RS03690 PF11870 Domain of unknown function (DUF3390) BEN53_RS03695 PF02589 LUD domain BEN53_RS03710 PF00732 GMC oxidoreductase BEN53_RS03710 PF05199 GMC oxidoreductase BEN53_RS03715 PF00171 Aldehyde dehydrogenase family BEN53_RS03720 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS03720 PF13977 BetI-type transcriptional repressor, C-terminal BEN53_RS03730 PF02028 BCCT, betaine/carnitine/choline family transporter BEN53_RS03740 PF00563 EAL domain BEN53_RS03740 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS03745 PF03466 LysR substrate binding domain BEN53_RS03745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS03750 PF06496 Protein of unknown function (DUF1097) BEN53_RS03760 PF12796 Ankyrin repeats (3 copies) BEN53_RS03765 PF11392 Protein of unknown function (DUF2877) BEN53_RS03770 PF00549 CoA-ligase BEN53_RS03770 PF02629 CoA binding domain BEN53_RS03775 PF06545 Protein of unknown function (DUF1116) BEN53_RS03780 PF00696 Amino acid kinase family BEN53_RS03785 PF07969 Amidohydrolase family BEN53_RS03790 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS03790 PF00107 Zinc-binding dehydrogenase BEN53_RS03805 PF01810 LysE type translocator BEN53_RS03810 PF07338 Protein of unknown function (DUF1471) BEN53_RS03815 PF00158 Sigma-54 interaction domain BEN53_RS03815 PF06506 Propionate catabolism activator BEN53_RS03815 PF02954 Bacterial regulatory protein, Fis family BEN53_RS03825 PF00285 Citrate synthase, C-terminal domain BEN53_RS03830 PF03972 MmgE/PrpD family BEN53_RS03835 PF13193 AMP-binding enzyme C-terminal domain BEN53_RS03835 PF00501 AMP-binding enzyme BEN53_RS03835 PF16177 Acetyl-coenzyme A synthetase N-terminus BEN53_RS03840 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BEN53_RS03845 PF07969 Amidohydrolase family BEN53_RS03850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS03850 PF03466 LysR substrate binding domain BEN53_RS03855 PF00484 Carbonic anhydrase BEN53_RS03860 PF02560 Cyanate lyase C-terminal domain BEN53_RS03865 PF07690 Major Facilitator Superfamily BEN53_RS03870 PF12464 Maltose acetyltransferase BEN53_RS03870 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS03875 PF01306 LacY proton/sugar symporter BEN53_RS03880 PF16353 Domain of unknown function(DUF4981) BEN53_RS03880 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BEN53_RS03880 PF02837 Glycosyl hydrolases family 2, sugar binding domain BEN53_RS03880 PF02929 Beta galactosidase small chain BEN53_RS03880 PF00703 Glycosyl hydrolases family 2 BEN53_RS03890 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS03895 PF01614 Bacterial transcriptional regulator BEN53_RS03895 PF09339 IclR helix-turn-helix domain BEN53_RS03900 PF01494 FAD binding domain BEN53_RS03905 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BEN53_RS03910 PF12697 Alpha/beta hydrolase family BEN53_RS03915 PF01557 Fumarylacetoacetate (FAA) hydrolase family BEN53_RS03920 PF01118 Semialdehyde dehydrogenase, NAD binding domain BEN53_RS03920 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation BEN53_RS03925 PF07836 DmpG-like communication domain BEN53_RS03925 PF00682 HMGL-like BEN53_RS03930 PF07690 Major Facilitator Superfamily BEN53_RS03935 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) BEN53_RS03940 PF00756 Putative esterase BEN53_RS03945 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS03945 PF00107 Zinc-binding dehydrogenase BEN53_RS03950 PF02583 Metal-sensitive transcriptional repressor BEN53_RS03960 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS03965 PF00535 Glycosyl transferase family 2 BEN53_RS03970 PF02585 GlcNAc-PI de-N-acetylase BEN53_RS03975 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BEN53_RS03980 PF00005 ABC transporter BEN53_RS03985 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS03990 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BEN53_RS03995 PF00490 Delta-aminolevulinic acid dehydratase BEN53_RS04000 PF03797 Autotransporter beta-domain BEN53_RS04000 PF03212 Pertactin BEN53_RS04005 PF15977 Winged helix-turn-helix DNA binding BEN53_RS04010 PF00144 Beta-lactamase BEN53_RS04020 PF05992 SbmA/BacA-like family BEN53_RS04025 PF07759 Protein of unknown function (DUF1615) BEN53_RS04030 PF10954 Protein of unknown function (DUF2755) BEN53_RS04040 PF10953 Protein of unknown function (DUF2754) BEN53_RS04045 PF01820 D-ala D-ala ligase N-terminus BEN53_RS04045 PF07478 D-ala D-ala ligase C-terminus BEN53_RS04055 PF10796 Sigma-S stabilisation anti-adaptor protein BEN53_RS04060 PF00245 Alkaline phosphatase BEN53_RS04065 PF07769 psiF repeat BEN53_RS04070 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS04070 PF05230 MASE2 domain BEN53_RS04075 PF03807 NADP oxidoreductase coenzyme F420-dependent BEN53_RS04075 PF14748 Pyrroline-5-carboxylate reductase dimerisation BEN53_RS04080 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BEN53_RS04085 PF01202 Shikimate kinase BEN53_RS04090 PF16362 YaiA protein BEN53_RS04100 PF07302 AroM protein BEN53_RS04105 PF06865 Pyrimidine/purine nucleoside phosphorylase BEN53_RS04125 PF04381 Putative exonuclease, RdgC BEN53_RS04130 PF00480 ROK family BEN53_RS04135 PF07690 Major Facilitator Superfamily BEN53_RS04140 PF13476 AAA domain BEN53_RS04145 PF12320 Type 5 capsule protein repressor C-terminal domain BEN53_RS04145 PF00149 Calcineurin-like phosphoesterase BEN53_RS04150 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS04150 PF00072 Response regulator receiver domain BEN53_RS04155 PF11808 Phosphate regulon sensor protein PhoR BEN53_RS04155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS04155 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS04155 PF00989 PAS fold BEN53_RS04160 PF05525 Branched-chain amino acid transport protein BEN53_RS04165 PF00324 Amino acid permease BEN53_RS04170 PF00128 Alpha amylase, catalytic domain BEN53_RS04170 PF02903 Alpha amylase, N-terminal ig-like domain BEN53_RS04180 PF04336 Acyl carrier protein phosphodiesterase BEN53_RS04185 PF02547 Queuosine biosynthesis protein BEN53_RS04190 PF01702 Queuine tRNA-ribosyltransferase BEN53_RS04195 PF02699 Preprotein translocase subunit BEN53_RS04200 PF07549 SecD/SecF GG Motif BEN53_RS04200 PF02355 Protein export membrane protein BEN53_RS04200 PF13721 SecD export protein N-terminal TM region BEN53_RS04205 PF07549 SecD/SecF GG Motif BEN53_RS04205 PF02355 Protein export membrane protein BEN53_RS04210 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH BEN53_RS04220 PF01844 HNH endonuclease BEN53_RS04225 PF03502 Nucleoside-specific channel-forming protein, Tsx BEN53_RS04240 PF01385 Probable transposase BEN53_RS04240 PF07282 Putative transposase DNA-binding domain BEN53_RS04240 PF12323 Helix-turn-helix domain BEN53_RS04250 PF03477 ATP cone domain BEN53_RS04255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BEN53_RS04255 PF01872 RibD C-terminal domain BEN53_RS04260 PF00885 6,7-dimethyl-8-ribityllumazine synthase BEN53_RS04265 PF01029 NusB family BEN53_RS04270 PF00586 AIR synthase related protein, N-terminal domain BEN53_RS04270 PF02769 AIR synthase related protein, C-terminal domain BEN53_RS04275 PF04608 Phosphatidylglycerophosphatase A BEN53_RS04280 PF00248 Aldo/keto reductase family BEN53_RS04285 PF02779 Transketolase, pyrimidine binding domain BEN53_RS04285 PF02780 Transketolase, C-terminal domain BEN53_RS04285 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BEN53_RS04290 PF00348 Polyprenyl synthetase BEN53_RS04295 PF02609 Exonuclease VII small subunit BEN53_RS04300 PF02568 Thiamine biosynthesis protein (ThiI) BEN53_RS04300 PF02926 THUMP domain BEN53_RS04305 PF01965 DJ-1/PfpI family BEN53_RS04310 PF08546 Ketopantoate reductase PanE/ApbA C terminal BEN53_RS04310 PF02558 Ketopantoate reductase PanE/ApbA BEN53_RS04315 PF04461 Protein of unknown function (DUF520) BEN53_RS04320 PF07690 Major Facilitator Superfamily BEN53_RS04340 PF01040 UbiA prenyltransferase family BEN53_RS04345 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BEN53_RS04350 PF00510 Cytochrome c oxidase subunit III BEN53_RS04355 PF00115 Cytochrome C and Quinol oxidase polypeptide I BEN53_RS04360 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BEN53_RS04360 PF06481 COX Aromatic Rich Motif BEN53_RS04365 PF07690 Major Facilitator Superfamily BEN53_RS04370 PF03923 Uncharacterized lipoprotein BEN53_RS04370 PF08139 Prokaryotic membrane lipoprotein lipid attachment site BEN53_RS04380 PF01722 BolA-like protein BEN53_RS04390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BEN53_RS04390 PF05698 Bacterial trigger factor protein (TF) C-terminus BEN53_RS04390 PF05697 Bacterial trigger factor protein (TF) BEN53_RS04395 PF00574 Clp protease BEN53_RS04400 PF10431 C-terminal, D2-small domain, of ClpB protein BEN53_RS04400 PF06689 ClpX C4-type zinc finger BEN53_RS04400 PF07724 AAA domain (Cdc48 subfamily) BEN53_RS04405 PF00004 ATPase family associated with various cellular activities (AAA) BEN53_RS04405 PF05362 Lon protease (S16) C-terminal proteolytic domain BEN53_RS04405 PF02190 ATP-dependent protease La (LON) substrate-binding domain BEN53_RS04410 PF00216 Bacterial DNA-binding protein BEN53_RS04415 PF13145 PPIC-type PPIASE domain BEN53_RS04430 PF06508 Queuosine biosynthesis protein QueC BEN53_RS04435 PF12793 Sugar transport-related sRNA regulator N-term BEN53_RS04435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS04445 PF01037 Lrp/AsnC ligand binding domain BEN53_RS04445 PF13404 AsnC-type helix-turn-helix domain BEN53_RS04450 PF00005 ABC transporter BEN53_RS04450 PF00664 ABC transporter transmembrane region BEN53_RS04455 PF00664 ABC transporter transmembrane region BEN53_RS04455 PF00005 ABC transporter BEN53_RS04460 PF00543 Nitrogen regulatory protein P-II BEN53_RS04465 PF00909 Ammonium Transporter Family BEN53_RS04475 PF09619 Type III secretion system lipoprotein chaperone (YscW) BEN53_RS04480 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BEN53_RS04490 PF07237 Protein of unknown function (DUF1428) BEN53_RS04495 PF12792 CSS motif domain associated with EAL BEN53_RS04495 PF00563 EAL domain BEN53_RS04500 PF10777 Inner membrane protein YlaC BEN53_RS04505 PF14602 Hexapeptide repeat of succinyl-transferase BEN53_RS04505 PF12464 Maltose acetyltransferase BEN53_RS04510 PF05321 Haemolysin expression modulating protein BEN53_RS04515 PF10757 Biofilm formation regulator YbaJ BEN53_RS04520 PF00873 AcrB/AcrD/AcrF family BEN53_RS04525 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS04525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS04530 PF08361 MAATS-type transcriptional repressor, C-terminal region BEN53_RS04530 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS04535 PF12794 Mechanosensitive ion channel inner membrane domain 1 BEN53_RS04535 PF12795 Mechanosensitive ion channel porin domain BEN53_RS04535 PF00924 Mechanosensitive ion channel BEN53_RS04540 PF10689 Protein of unknown function (DUF2496) BEN53_RS04545 PF07445 Primosomal replication protein priC BEN53_RS04550 PF04304 Protein of unknown function (DUF454) BEN53_RS04560 PF00156 Phosphoribosyl transferase domain BEN53_RS04565 PF12170 DNA polymerase III tau subunit V interacting with alpha BEN53_RS04565 PF12169 DNA polymerase III subunits gamma and tau domain III BEN53_RS04565 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BEN53_RS04570 PF02575 YbaB/EbfC DNA-binding family BEN53_RS04575 PF13662 Toprim domain BEN53_RS04575 PF02132 RecR protein BEN53_RS04580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS04580 PF00183 Hsp90 protein BEN53_RS04590 PF05191 Adenylate kinase, active site lid BEN53_RS04595 PF00762 Ferrochelatase BEN53_RS04600 PF07859 alpha/beta hydrolase fold BEN53_RS04605 PF00294 pfkB family carbohydrate kinase BEN53_RS04610 PF02254 TrkA-N domain BEN53_RS04610 PF00999 Sodium/hydrogen exchanger family BEN53_RS04615 PF07690 Major Facilitator Superfamily BEN53_RS04625 PF02872 5'-nucleotidase, C-terminal domain BEN53_RS04625 PF00149 Calcineurin-like phosphoesterase BEN53_RS04630 PF04073 Aminoacyl-tRNA editing domain BEN53_RS04640 PF01963 TraB family BEN53_RS04645 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BEN53_RS04650 PF01381 Helix-turn-helix BEN53_RS04655 PF00403 Heavy-metal-associated domain BEN53_RS04660 PF04960 Glutaminase BEN53_RS04665 PF13520 Amino acid permease BEN53_RS04670 PF13411 MerR HTH family regulatory protein BEN53_RS04695 PF01957 NfeD-like C-terminal, partner-binding BEN53_RS04700 PF01145 SPFH domain / Band 7 family BEN53_RS04700 PF16200 C-terminal region of band_7 BEN53_RS04705 PF00005 ABC transporter BEN53_RS04710 PF03649 Uncharacterised protein family (UPF0014) BEN53_RS04715 PF00085 Thioredoxin BEN53_RS04720 PF00106 short chain dehydrogenase BEN53_RS04725 PF13472 GDSL-like Lipase/Acylhydrolase family BEN53_RS04730 PF00005 ABC transporter BEN53_RS04745 PF03466 LysR substrate binding domain BEN53_RS04745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS04750 PF04115 Ureidoglycolate lyase BEN53_RS04755 PF09339 IclR helix-turn-helix domain BEN53_RS04755 PF01614 Bacterial transcriptional regulator BEN53_RS04760 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN53_RS04760 PF00205 Thiamine pyrophosphate enzyme, central domain BEN53_RS04760 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN53_RS04765 PF01261 Xylose isomerase-like TIM barrel BEN53_RS04770 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BEN53_RS04770 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BEN53_RS04775 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BEN53_RS04780 PF01979 Amidohydrolase family BEN53_RS04785 PF00860 Permease family BEN53_RS04790 PF02595 Glycerate kinase family BEN53_RS04795 PF07883 Cupin domain BEN53_RS04795 PF05899 Protein of unknown function (DUF861) BEN53_RS04800 PF01546 Peptidase family M20/M25/M40 BEN53_RS04805 PF02615 Malate/L-lactate dehydrogenase BEN53_RS04810 PF02629 CoA binding domain BEN53_RS04810 PF00549 CoA-ligase BEN53_RS04815 PF06545 Protein of unknown function (DUF1116) BEN53_RS04820 PF11392 Protein of unknown function (DUF2877) BEN53_RS04825 PF00696 Amino acid kinase family BEN53_RS04830 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BEN53_RS04830 PF02222 ATP-grasp domain BEN53_RS04835 PF00731 AIR carboxylase BEN53_RS04845 PF12850 Calcineurin-like phosphoesterase superfamily domain BEN53_RS04850 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BEN53_RS04855 PF01406 tRNA synthetases class I (C) catalytic domain BEN53_RS04855 PF09190 DALR domain BEN53_RS04860 PF04307 LexA-binding, inner membrane-associated putative hydrolase BEN53_RS04870 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BEN53_RS04870 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BEN53_RS04875 PF00419 Fimbrial protein BEN53_RS04880 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS04880 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS04885 PF13954 PapC N-terminal domain BEN53_RS04885 PF13953 PapC C-terminal domain BEN53_RS04885 PF00577 Outer membrane usher protein BEN53_RS04890 PF00419 Fimbrial protein BEN53_RS04895 PF00419 Fimbrial protein BEN53_RS04900 PF00072 Response regulator receiver domain BEN53_RS04900 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS04910 PF00589 Phage integrase family BEN53_RS04980 PF01381 Helix-turn-helix BEN53_RS04980 PF00717 Peptidase S24-like BEN53_RS05000 PF06992 Replication protein P BEN53_RS05010 PF00893 Small Multidrug Resistance protein BEN53_RS05015 PF13408 Recombinase zinc beta ribbon domain BEN53_RS05015 PF07508 Recombinase BEN53_RS05015 PF00239 Resolvase, N terminal domain BEN53_RS05045 PF07102 Protein of unknown function (DUF1364) BEN53_RS05050 PF05866 Endodeoxyribonuclease RusA BEN53_RS05090 PF03245 Bacteriophage Rz lysis protein BEN53_RS05095 PF06291 Bor protein BEN53_RS05100 PF13132 Domain of unknown function (DUF3950) BEN53_RS05110 PF07471 Phage DNA packaging protein Nu1 BEN53_RS05115 PF02413 Caudovirales tail fibre assembly protein, lambda gpK BEN53_RS05120 PF02831 gpW BEN53_RS05130 PF01957 NfeD-like C-terminal, partner-binding BEN53_RS05130 PF01972 Serine dehydrogenase proteinase BEN53_RS05140 PF03864 Phage major capsid protein E BEN53_RS05180 PF06791 Prophage tail length tape measure protein BEN53_RS05210 PF06316 Enterobacterial Ail/Lom protein BEN53_RS05215 PF07484 Phage Tail Collar Domain BEN53_RS05215 PF03335 Phage tail fibre repeat BEN53_RS05215 PF08400 Prophage tail fibre N-terminal BEN53_RS05245 PF08242 Methyltransferase domain BEN53_RS05255 PF00561 alpha/beta hydrolase fold BEN53_RS05260 PF01278 Omptin family BEN53_RS05275 PF12833 Helix-turn-helix domain BEN53_RS05285 PF14488 Domain of unknown function (DUF4434) BEN53_RS05290 PF13283 Bacteriophage N adsorption protein A C-term BEN53_RS05295 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BEN53_RS05295 PF13632 Glycosyl transferase family group 2 BEN53_RS05300 PF00672 HAMP domain BEN53_RS05300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS05300 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS05305 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS05305 PF00072 Response regulator receiver domain BEN53_RS05315 PF02321 Outer membrane efflux protein BEN53_RS05320 PF11604 Copper binding periplasmic protein CusF BEN53_RS05325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS05325 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS05330 PF00873 AcrB/AcrD/AcrF family BEN53_RS05335 PF00324 Amino acid permease BEN53_RS05340 PF00924 Mechanosensitive ion channel BEN53_RS05345 PF00881 Nitroreductase family BEN53_RS05350 PF04237 YjbR BEN53_RS05355 PF06643 Protein of unknown function (DUF1158) BEN53_RS05360 PF04107 Glutamate-cysteine ligase family 2(GCS2) BEN53_RS05375 PF01848 Hok/gef family BEN53_RS05380 PF01648 4'-phosphopantetheinyl transferase superfamily BEN53_RS05380 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BEN53_RS05385 PF00593 TonB dependent receptor BEN53_RS05385 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS05390 PF00756 Putative esterase BEN53_RS05390 PF11806 Domain of unknown function (DUF3327) BEN53_RS05395 PF03621 MbtH-like protein BEN53_RS05400 PF00668 Condensation domain BEN53_RS05400 PF00550 Phosphopantetheine attachment site BEN53_RS05400 PF13193 AMP-binding enzyme C-terminal domain BEN53_RS05400 PF00975 Thioesterase domain BEN53_RS05400 PF00501 AMP-binding enzyme BEN53_RS05405 PF02706 Chain length determinant protein BEN53_RS05410 PF00005 ABC transporter BEN53_RS05415 PF01032 FecCD transport family BEN53_RS05420 PF01032 FecCD transport family BEN53_RS05425 PF05977 Transmembrane secretion effector BEN53_RS05430 PF01497 Periplasmic binding protein BEN53_RS05435 PF00425 chorismate binding enzyme BEN53_RS05440 PF00501 AMP-binding enzyme BEN53_RS05440 PF13193 AMP-binding enzyme C-terminal domain BEN53_RS05445 PF00550 Phosphopantetheine attachment site BEN53_RS05445 PF00857 Isochorismatase family BEN53_RS05455 PF03061 Thioesterase superfamily BEN53_RS05460 PF02554 Carbon starvation protein CstA BEN53_RS05460 PF13722 5TM C-terminal transporter carbon starvation CstA BEN53_RS05465 PF04328 Selenoprotein, putative BEN53_RS05470 PF00465 Iron-containing alcohol dehydrogenase BEN53_RS05475 PF00155 Aminotransferase class I and II BEN53_RS05480 PF02195 ParB-like nuclease domain BEN53_RS05485 PF11922 Domain of unknown function (DUF3440) BEN53_RS05485 PF01507 Phosphoadenosine phosphosulfate reductase family BEN53_RS05490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS05490 PF03466 LysR substrate binding domain BEN53_RS05495 PF13098 Thioredoxin-like domain BEN53_RS05500 PF10417 C-terminal domain of 1-Cys peroxiredoxin BEN53_RS05500 PF00578 AhpC/TSA family BEN53_RS05510 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS05510 PF13192 Thioredoxin domain BEN53_RS05515 PF00582 Universal stress protein family BEN53_RS05520 PF01272 Transcription elongation factor, GreA/GreB, C-term BEN53_RS05520 PF14760 Rnk N-terminus BEN53_RS05530 PF00445 Ribonuclease T2 family BEN53_RS05535 PF00939 Sodium:sulfate symporter transmembrane region BEN53_RS05540 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase BEN53_RS05545 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase BEN53_RS05550 PF04223 Citrate lyase, alpha subunit (CitF) BEN53_RS05555 PF03328 HpcH/HpaI aldolase/citrate lyase family BEN53_RS05560 PF06857 Malonate decarboxylase delta subunit (MdcD) BEN53_RS05565 PF08218 Citrate lyase ligase C-terminal domain BEN53_RS05570 PF00989 PAS fold BEN53_RS05570 PF17203 Single cache domain 3 BEN53_RS05570 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BEN53_RS05570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS05575 PF12431 Transcriptional regulator BEN53_RS05575 PF00072 Response regulator receiver domain BEN53_RS05580 PF03606 C4-dicarboxylate anaerobic carrier BEN53_RS05590 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP BEN53_RS05595 PF00313 'Cold-shock' DNA-binding domain BEN53_RS05600 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BEN53_RS05605 PF00795 Carbon-nitrogen hydrolase BEN53_RS05610 PF02416 mttA/Hcf106 family BEN53_RS05615 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BEN53_RS05615 PF04055 Radical SAM superfamily BEN53_RS05625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS05625 PF03466 LysR substrate binding domain BEN53_RS05635 PF03099 Biotin/lipoate A/B protein ligase family BEN53_RS05640 PF04359 Protein of unknown function (DUF493) BEN53_RS05645 PF00768 D-alanyl-D-alanine carboxypeptidase BEN53_RS05645 PF07943 Penicillin-binding protein 5, C-terminal domain BEN53_RS05650 PF05036 Sporulation related domain BEN53_RS05650 PF03330 Lytic transglycolase BEN53_RS05655 PF01098 Cell cycle protein BEN53_RS05660 PF00905 Penicillin binding protein transpeptidase domain BEN53_RS05660 PF03717 Penicillin-binding Protein dimerisation domain BEN53_RS05665 PF02590 Predicted SPOUT methyltransferase BEN53_RS05675 PF00300 Histidine phosphatase superfamily (branch 1) BEN53_RS05680 PF01467 Cytidylyltransferase-like BEN53_RS05685 PF14840 Processivity clamp loader gamma complex DNA pol III C-term BEN53_RS05685 PF06144 DNA polymerase III, delta subunit BEN53_RS05690 PF04390 Lipopolysaccharide-assembly BEN53_RS05695 PF13603 Leucyl-tRNA synthetase, Domain 2 BEN53_RS05695 PF00133 tRNA synthetases class I (I, L, M and V) BEN53_RS05695 PF08264 Anticodon-binding domain of tRNA BEN53_RS05700 PF07295 Zinc-ribbon containing domain BEN53_RS05705 PF08238 Sel1 repeat BEN53_RS05710 PF06889 Protein of unknown function (DUF1266) BEN53_RS05720 PF08238 Sel1 repeat BEN53_RS05725 PF06889 Protein of unknown function (DUF1266) BEN53_RS05735 PF00012 Hsp70 protein BEN53_RS05740 PF01156 Inosine-uridine preferring nucleoside hydrolase BEN53_RS05745 PF00005 ABC transporter BEN53_RS05750 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS05755 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS05760 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS05765 PF01694 Rhomboid family BEN53_RS05770 PF00795 Carbon-nitrogen hydrolase BEN53_RS05775 PF00571 CBS domain BEN53_RS05775 PF03471 Transporter associated domain BEN53_RS05780 PF02130 Uncharacterized protein family UPF0054 BEN53_RS05785 PF02562 PhoH-like protein BEN53_RS05790 PF01938 TRAM domain BEN53_RS05790 PF04055 Radical SAM superfamily BEN53_RS05790 PF00919 Uncharacterized protein family UPF0004 BEN53_RS05795 PF01494 FAD binding domain BEN53_RS05845 PF13537 Glutamine amidotransferase domain BEN53_RS05845 PF00733 Asparagine synthase BEN53_RS05855 PF13344 Haloacid dehalogenase-like hydrolase BEN53_RS05860 PF00480 ROK family BEN53_RS05860 PF01047 MarR family BEN53_RS05865 PF01979 Amidohydrolase family BEN53_RS05870 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BEN53_RS05875 PF02378 Phosphotransferase system, EIIC BEN53_RS05875 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BEN53_RS05875 PF00367 phosphotransferase system, EIIB BEN53_RS05880 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BEN53_RS05880 PF00749 tRNA synthetases class I (E and Q), catalytic domain BEN53_RS05885 PF03573 outer membrane porin, OprD family BEN53_RS05890 PF13982 YbfN-like lipoprotein BEN53_RS05895 PF01475 Ferric uptake regulator family BEN53_RS05905 PF00258 Flavodoxin BEN53_RS05910 PF01402 Ribbon-helix-helix protein, copG family BEN53_RS05915 PF12697 Alpha/beta hydrolase family BEN53_RS05920 PF03925 SeqA protein C-terminal domain BEN53_RS05920 PF17206 SeqA protein N-terminal domain BEN53_RS05925 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEN53_RS05925 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEN53_RS05925 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEN53_RS05925 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEN53_RS05930 PF13520 Amino acid permease BEN53_RS05935 PF01276 Orn/Lys/Arg decarboxylase, major domain BEN53_RS05935 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BEN53_RS05935 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BEN53_RS05945 PF00072 Response regulator receiver domain BEN53_RS05945 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS05950 PF13493 Domain of unknown function (DUF4118) BEN53_RS05950 PF02702 Osmosensitive K+ channel His kinase sensor domain BEN53_RS05950 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS05950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS05950 PF13492 GAF domain BEN53_RS05955 PF02669 K+-transporting ATPase, c chain BEN53_RS05965 PF03814 Potassium-transporting ATPase A subunit BEN53_RS05970 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) BEN53_RS05975 PF10725 Protein of unknown function (DUF2517) BEN53_RS05980 PF08349 Protein of unknown function (DUF1722) BEN53_RS05985 PF03441 FAD binding domain of DNA photolyase BEN53_RS05985 PF00875 DNA photolyase BEN53_RS05990 PF00854 POT family BEN53_RS05995 PF01784 NIF3 (NGG1p interacting factor 3) BEN53_RS06000 PF02682 Carboxyltransferase domain, subdomain C and D BEN53_RS06005 PF02626 Carboxyltransferase domain, subdomain A and B BEN53_RS06010 PF03746 LamB/YcsF family BEN53_RS06015 PF06827 Zinc finger found in FPG and IleRS BEN53_RS06015 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BEN53_RS06015 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BEN53_RS06020 PF05145 Transition state regulatory protein AbrB BEN53_RS06025 PF07729 FCD domain BEN53_RS06025 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS06030 PF00180 Isocitrate/isopropylmalate dehydrogenase BEN53_RS06030 PF03737 Aldolase/RraA BEN53_RS06035 PF00107 Zinc-binding dehydrogenase BEN53_RS06035 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS06050 PF08666 SAF domain BEN53_RS06050 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BEN53_RS06055 PF03480 Bacterial extracellular solute-binding protein, family 7 BEN53_RS06065 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BEN53_RS06070 PF00285 Citrate synthase, C-terminal domain BEN53_RS06080 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BEN53_RS06085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BEN53_RS06090 PF00890 FAD binding domain BEN53_RS06090 PF02910 Fumarate reductase flavoprotein C-term BEN53_RS06095 PF13085 2Fe-2S iron-sulfur cluster binding domain BEN53_RS06100 PF02779 Transketolase, pyrimidine binding domain BEN53_RS06100 PF16870 2-oxoglutarate dehydrogenase C-terminal BEN53_RS06100 PF00676 Dehydrogenase E1 component BEN53_RS06100 PF16078 2-oxoglutarate dehydrogenase N-terminus BEN53_RS06105 PF02817 e3 binding domain BEN53_RS06105 PF00364 Biotin-requiring enzyme BEN53_RS06105 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BEN53_RS06110 PF08442 ATP-grasp domain BEN53_RS06110 PF00549 CoA-ligase BEN53_RS06115 PF02629 CoA binding domain BEN53_RS06115 PF00549 CoA-ligase BEN53_RS06125 PF17392 Urocanase C-terminal domain BEN53_RS06125 PF01175 Urocanase Rossmann-like domain BEN53_RS06125 PF17391 Urocanase N-terminal domain BEN53_RS06130 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BEN53_RS06135 PF05962 HutD BEN53_RS06140 PF01979 Amidohydrolase family BEN53_RS06145 PF00491 Arginase family BEN53_RS06150 PF00221 Aromatic amino acid lyase BEN53_RS06155 PF03466 LysR substrate binding domain BEN53_RS06155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS06160 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BEN53_RS06160 PF12557 Cob(I)alamin adenosyltransferase N terminal BEN53_RS06165 PF05683 Fumarase C-terminus BEN53_RS06165 PF05681 Fumarate hydratase (Fumerase) BEN53_RS06170 PF00375 Sodium:dicarboxylate symporter family BEN53_RS06185 PF05034 Methylaspartate ammonia-lyase N-terminus BEN53_RS06185 PF07476 Methylaspartate ammonia-lyase C-terminus BEN53_RS06190 PF06368 Methylaspartate mutase E chain (MutE) BEN53_RS06195 PF13941 MutL protein BEN53_RS06200 PF02310 B12 binding domain BEN53_RS06230 PF01654 Cytochrome bd terminal oxidase subunit I BEN53_RS06235 PF02322 Cytochrome bd terminal oxidase subunit II BEN53_RS06240 PF08173 Membrane bound YbgT-like protein BEN53_RS06245 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) BEN53_RS06250 PF03061 Thioesterase superfamily BEN53_RS06255 PF01618 MotA/TolQ/ExbB proton channel family BEN53_RS06260 PF02472 Biopolymer transport protein ExbD/TolR BEN53_RS06265 PF06519 TolA C-terminal BEN53_RS06270 PF07676 WD40-like Beta Propeller Repeat BEN53_RS06270 PF04052 TolB amino-terminal domain BEN53_RS06275 PF00691 OmpA family BEN53_RS06280 PF16331 TolA binding protein trimerisation BEN53_RS06280 PF13174 Tetratricopeptide repeat BEN53_RS06320 PF02445 Quinolinate synthetase A protein BEN53_RS06325 PF04973 Nicotinamide mononucleotide transporter BEN53_RS06330 PF01545 Cation efflux family BEN53_RS06335 PF13985 YbgS-like protein BEN53_RS06345 PF00793 DAHP synthetase I family BEN53_RS06350 PF00300 Histidine phosphatase superfamily (branch 1) BEN53_RS06355 PF01263 Aldose 1-epimerase BEN53_RS06360 PF08544 GHMP kinases C terminal BEN53_RS06360 PF10509 Galactokinase galactose-binding signature BEN53_RS06360 PF00288 GHMP kinases N terminal domain BEN53_RS06365 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BEN53_RS06365 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BEN53_RS06370 PF16363 GDP-mannose 4,6 dehydratase BEN53_RS06375 PF00005 ABC transporter BEN53_RS06380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS06380 PF03459 TOBE domain BEN53_RS06385 PF10766 Multidrug efflux pump-associated protein AcrZ BEN53_RS06400 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS06405 PF00005 ABC transporter BEN53_RS06405 PF03459 TOBE domain BEN53_RS06415 PF10282 Lactonase, 7-bladed beta-propeller BEN53_RS06420 PF03466 LysR substrate binding domain BEN53_RS06420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS06425 PF04303 PrpF protein BEN53_RS06430 PF00939 Sodium:sulfate symporter transmembrane region BEN53_RS06435 PF00330 Aconitase family (aconitate hydratase) BEN53_RS06435 PF00694 Aconitase C-terminal domain BEN53_RS06440 PF01095 Pectinesterase BEN53_RS06445 PF01161 Phosphatidylethanolamine-binding protein BEN53_RS06450 PF00202 Aminotransferase class-III BEN53_RS06455 PF04055 Radical SAM superfamily BEN53_RS06455 PF06968 Biotin and Thiamin Synthesis associated domain BEN53_RS06460 PF00155 Aminotransferase class I and II BEN53_RS06465 PF08241 Methyltransferase domain BEN53_RS06475 PF17757 UvrB interaction domain BEN53_RS06475 PF02151 UvrB/uvrC motif BEN53_RS06475 PF00271 Helicase conserved C-terminal domain BEN53_RS06475 PF04851 Type III restriction enzyme, res subunit BEN53_RS06475 PF12344 Ultra-violet resistance protein B BEN53_RS06480 PF01933 Uncharacterised protein family UPF0052 BEN53_RS06485 PF06463 Molybdenum Cofactor Synthesis C BEN53_RS06485 PF04055 Radical SAM superfamily BEN53_RS06490 PF00994 Probable molybdopterin binding domain BEN53_RS06495 PF01967 MoaC family BEN53_RS06500 PF02597 ThiS family BEN53_RS06505 PF02391 MoaE protein BEN53_RS06510 PF01027 Inhibitor of apoptosis-promoting Bax1 BEN53_RS06520 PF01027 Inhibitor of apoptosis-promoting Bax1 BEN53_RS06525 PF03706 Lysylphosphatidylglycerol synthase TM region BEN53_RS06530 PF13091 PLD-like domain BEN53_RS06535 PF03372 Endonuclease/Exonuclease/phosphatase family BEN53_RS06540 PF11076 Putative inner membrane protein YbhQ BEN53_RS06555 PF00005 ABC transporter BEN53_RS06560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS06565 PF09209 Tetracyclin repressor-like, C-terminal domain BEN53_RS06565 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS06570 PF00270 DEAD/DEAH box helicase BEN53_RS06570 PF00271 Helicase conserved C-terminal domain BEN53_RS06590 PF06733 DEAD_2 BEN53_RS06590 PF00270 DEAD/DEAH box helicase BEN53_RS06590 PF13307 Helicase C-terminal domain BEN53_RS06595 PF02885 Glycosyl transferase family, helical bundle domain BEN53_RS06600 PF02615 Malate/L-lactate dehydrogenase BEN53_RS06605 PF07338 Protein of unknown function (DUF1471) BEN53_RS06610 PF01258 Prokaryotic dksA/traR C4-type zinc finger BEN53_RS06615 PF18331 PKHD-type hydroxylase C-terminal domain BEN53_RS06615 PF13640 2OG-Fe(II) oxygenase superfamily BEN53_RS06620 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS06620 PF00593 TonB dependent receptor BEN53_RS06625 PF07338 Protein of unknown function (DUF1471) BEN53_RS06630 PF05971 RNA methyltransferase BEN53_RS06635 PF00924 Mechanosensitive ion channel BEN53_RS06640 PF00005 ABC transporter BEN53_RS06645 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS06650 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS06660 PF00210 Ferritin-like domain BEN53_RS06665 PF00892 EamA-like transporter family BEN53_RS06670 PF13505 Outer membrane protein beta-barrel domain BEN53_RS06675 PF00884 Sulfatase BEN53_RS06685 PF02742 Iron dependent repressor, metal binding and dimerisation domain BEN53_RS06685 PF01325 Iron dependent repressor, N-terminal DNA binding domain BEN53_RS06690 PF03600 Citrate transporter BEN53_RS06695 PF17969 L,D-transpeptidase C-terminal domain BEN53_RS06695 PF03734 L,D-transpeptidase catalytic domain BEN53_RS06700 PF12848 ABC transporter BEN53_RS06700 PF00005 ABC transporter BEN53_RS06715 PF07350 Protein of unknown function (DUF1479) BEN53_RS06725 PF01228 Glycine radical BEN53_RS06725 PF02901 Pyruvate formate lyase-like BEN53_RS06730 PF04055 Radical SAM superfamily BEN53_RS06735 PF00923 Transaldolase/Fructose-6-phosphate aldolase BEN53_RS06740 PF00899 ThiF family BEN53_RS06745 PF03453 MoeA N-terminal region (domain I and II) BEN53_RS06745 PF03454 MoeA C-terminal region (domain IV) BEN53_RS06745 PF00994 Probable molybdopterin binding domain BEN53_RS06750 PF01112 Asparaginase BEN53_RS06755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN53_RS06755 PF00005 ABC transporter BEN53_RS06760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS06765 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS06770 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS06770 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN53_RS06775 PF17153 Periplasmic sensor domain, extracellular BEN53_RS06775 PF00563 EAL domain BEN53_RS06795 PF00919 Uncharacterized protein family UPF0004 BEN53_RS06795 PF04055 Radical SAM superfamily BEN53_RS06795 PF18693 TRAM domain BEN53_RS06800 PF10799 Biofilm formation protein (YliH/bssR) BEN53_RS06805 PF07995 Glucose / Sorbosone dehydrogenase BEN53_RS06810 PF00043 Glutathione S-transferase, C-terminal domain BEN53_RS06810 PF13417 Glutathione S-transferase, N-terminal domain BEN53_RS06815 PF00768 D-alanyl-D-alanine carboxypeptidase BEN53_RS06815 PF07943 Penicillin-binding protein 5, C-terminal domain BEN53_RS06820 PF00455 DeoR C terminal sensor domain BEN53_RS06820 PF08220 DeoR-like helix-turn-helix domain BEN53_RS06825 PF01569 PAP2 superfamily BEN53_RS06830 PF07690 Major Facilitator Superfamily BEN53_RS06845 PF07690 Major Facilitator Superfamily BEN53_RS06850 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS06855 PF06826 Predicted Permease Membrane Region BEN53_RS06855 PF02080 TrkA-C domain BEN53_RS06860 PF11045 Putative inner membrane protein of Enterobacteriaceae BEN53_RS06865 PF00462 Glutaredoxin BEN53_RS06870 PF07214 Protein of unknown function (DUF1418) BEN53_RS06875 PF00881 Nitroreductase family BEN53_RS06880 PF08443 RimK-like ATP-grasp domain BEN53_RS06880 PF18030 RimK PreATP-grasp domain BEN53_RS06885 PF10722 Putative bacterial sensory transduction regulator BEN53_RS06895 PF13416 Bacterial extracellular solute-binding protein BEN53_RS06900 PF08402 TOBE domain BEN53_RS06900 PF00005 ABC transporter BEN53_RS06905 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS06910 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS06915 PF10767 Protein of unknown function (DUF2593) BEN53_RS06920 PF05958 tRNA (Uracil-5-)-methyltransferase BEN53_RS06925 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS06930 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS06935 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS06940 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS06945 PF00005 ABC transporter BEN53_RS06950 PF12883 Protein of unknown function (DUF3828) BEN53_RS06970 PF01906 Putative heavy-metal-binding BEN53_RS06975 PF01510 N-acetylmuramoyl-L-alanine amidase BEN53_RS06980 PF01370 NAD dependent epimerase/dehydratase family BEN53_RS06985 PF13460 NAD(P)H-binding BEN53_RS06985 PF11066 Protein of unknown function (DUF2867) BEN53_RS06990 PF01212 Beta-eliminating lyase BEN53_RS06995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN53_RS06995 PF00205 Thiamine pyrophosphate enzyme, central domain BEN53_RS06995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN53_RS07000 PF00175 Oxidoreductase NAD-binding domain BEN53_RS07000 PF00111 2Fe-2S iron-sulfur cluster binding domain BEN53_RS07000 PF00970 Oxidoreductase FAD-binding domain BEN53_RS07005 PF03063 Prismane/CO dehydrogenase family BEN53_RS07010 PF03956 Lysine exporter LysO BEN53_RS07020 PF02371 Transposase IS116/IS110/IS902 family BEN53_RS07020 PF01548 Transposase BEN53_RS07040 PF02321 Outer membrane efflux protein BEN53_RS07050 PF09335 SNARE associated Golgi protein BEN53_RS07055 PF04893 Yip1 domain BEN53_RS07060 PF00768 D-alanyl-D-alanine carboxypeptidase BEN53_RS07065 PF09330 D-lactate dehydrogenase, membrane binding BEN53_RS07065 PF01565 FAD binding domain BEN53_RS07070 PF01915 Glycosyl hydrolase family 3 C-terminal domain BEN53_RS07070 PF14310 Fibronectin type III-like domain BEN53_RS07070 PF00933 Glycosyl hydrolase family 3 N terminal domain BEN53_RS07075 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BEN53_RS07080 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS07085 PF00005 ABC transporter BEN53_RS07090 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS07100 PF13411 MerR HTH family regulatory protein BEN53_RS07105 PF07694 5TMR of 5TMR-LYT BEN53_RS07105 PF06580 Histidine kinase BEN53_RS07110 PF00072 Response regulator receiver domain BEN53_RS07110 PF04397 LytTr DNA-binding domain BEN53_RS07115 PF07308 Protein of unknown function (DUF1456) BEN53_RS07120 PF06998 Protein of unknown function (DUF1307) BEN53_RS07125 PF04434 SWIM zinc finger BEN53_RS07130 PF05762 VWA domain containing CoxE-like protein BEN53_RS07140 PF07728 AAA domain (dynein-related subfamily) BEN53_RS07150 PF13569 Domain of unknown function (DUF4132) BEN53_RS07155 PF13569 Domain of unknown function (DUF4132) BEN53_RS07160 PF13569 Domain of unknown function (DUF4132) BEN53_RS07165 PF01588 Putative tRNA binding domain BEN53_RS07165 PF09334 tRNA synthetases class I (M) BEN53_RS07170 PF10609 NUBPL iron-transfer P-loop NTPase BEN53_RS07175 PF10836 Protein of unknown function (DUF2574) BEN53_RS07185 PF00419 Fimbrial protein BEN53_RS07190 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS07190 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS07195 PF13953 PapC C-terminal domain BEN53_RS07195 PF00577 Outer membrane usher protein BEN53_RS07195 PF13954 PapC N-terminal domain BEN53_RS07200 PF00419 Fimbrial protein BEN53_RS07205 PF11776 Nickel/cobalt transporter regulator BEN53_RS07210 PF03824 High-affinity nickel-transport protein BEN53_RS07215 PF02583 Metal-sensitive transcriptional repressor BEN53_RS07235 PF01381 Helix-turn-helix BEN53_RS07240 PF00239 Resolvase, N terminal domain BEN53_RS07240 PF02796 Helix-turn-helix domain of resolvase BEN53_RS07270 PF02110 Hydroxyethylthiazole kinase family BEN53_RS07275 PF08543 Phosphomethylpyrimidine kinase BEN53_RS07280 PF01183 Glycosyl hydrolases family 25 BEN53_RS07285 PF07702 UTRA domain BEN53_RS07285 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS07290 PF00294 pfkB family carbohydrate kinase BEN53_RS07295 PF03747 ADP-ribosylglycohydrolase BEN53_RS07300 PF03825 Nucleoside H+ symporter BEN53_RS07305 PF01791 DeoC/LacD family aldolase BEN53_RS07310 PF01116 Fructose-bisphosphate aldolase class-II BEN53_RS07315 PF08013 Tagatose 6 phosphate kinase BEN53_RS07320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS07325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS07330 PF03611 PTS system sugar-specific permease component BEN53_RS07335 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS07335 PF00107 Zinc-binding dehydrogenase BEN53_RS07340 PF08220 DeoR-like helix-turn-helix domain BEN53_RS07345 PF00781 Diacylglycerol kinase catalytic domain BEN53_RS07360 PF01136 Peptidase family U32 BEN53_RS07360 PF16325 Peptidase family U32 C-terminal domain BEN53_RS07370 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH BEN53_RS07375 PF07411 Domain of unknown function (DUF1508) BEN53_RS07380 PF00072 Response regulator receiver domain BEN53_RS07380 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS07385 PF00672 HAMP domain BEN53_RS07385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS07385 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS07390 PF07690 Major Facilitator Superfamily BEN53_RS07395 PF00873 AcrB/AcrD/AcrF family BEN53_RS07400 PF00873 AcrB/AcrD/AcrF family BEN53_RS07405 PF13533 Biotin-lipoyl like BEN53_RS07435 PF00092 von Willebrand factor type A domain BEN53_RS07450 PF00012 Hsp70 protein BEN53_RS07460 PF00730 HhH-GPD superfamily base excision DNA repair protein BEN53_RS07460 PF06029 AlkA N-terminal domain BEN53_RS07465 PF00563 EAL domain BEN53_RS07465 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS07465 PF05231 MASE1 BEN53_RS07465 PF08447 PAS fold BEN53_RS07465 PF08448 PAS fold BEN53_RS07465 PF13426 PAS domain BEN53_RS07470 PF00485 Phosphoribulokinase / Uridine kinase family BEN53_RS07475 PF00692 dUTPase BEN53_RS07480 PF05170 AsmA family BEN53_RS07495 PF03471 Transporter associated domain BEN53_RS07495 PF03741 Integral membrane protein TerC family BEN53_RS07495 PF00571 CBS domain BEN53_RS07500 PF02563 Polysaccharide biosynthesis/export protein BEN53_RS07500 PF10531 SLBB domain BEN53_RS07500 PF18412 Outer-membrane lipoprotein Wza C-terminal domain BEN53_RS07505 PF01451 Low molecular weight phosphotyrosine protein phosphatase BEN53_RS07510 PF13614 AAA domain BEN53_RS07510 PF13807 G-rich domain on putative tyrosine kinase BEN53_RS07510 PF02706 Chain length determinant protein BEN53_RS07515 PF00535 Glycosyl transferase family 2 BEN53_RS07520 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS07525 PF13439 Glycosyltransferase Family 4 BEN53_RS07525 PF00534 Glycosyl transferases group 1 BEN53_RS07535 PF00535 Glycosyl transferase family 2 BEN53_RS07540 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS07545 PF16363 GDP-mannose 4,6 dehydratase BEN53_RS07550 PF01370 NAD dependent epimerase/dehydratase family BEN53_RS07555 PF00293 NUDIX domain BEN53_RS07560 PF00534 Glycosyl transferases group 1 BEN53_RS07560 PF13579 Glycosyl transferase 4-like domain BEN53_RS07565 PF00483 Nucleotidyl transferase BEN53_RS07565 PF01050 Mannose-6-phosphate isomerase BEN53_RS07570 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEN53_RS07570 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEN53_RS07570 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEN53_RS07570 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEN53_RS07575 PF02397 Bacterial sugar transferase BEN53_RS07585 PF04230 Polysaccharide pyruvyl transferase BEN53_RS07590 PF13439 Glycosyltransferase Family 4 BEN53_RS07590 PF00534 Glycosyl transferases group 1 BEN53_RS07600 PF01370 NAD dependent epimerase/dehydratase family BEN53_RS07605 PF00483 Nucleotidyl transferase BEN53_RS07610 PF01943 Polysaccharide biosynthesis protein BEN53_RS07615 PF00535 Glycosyl transferase family 2 BEN53_RS07625 PF13439 Glycosyltransferase Family 4 BEN53_RS07625 PF00534 Glycosyl transferases group 1 BEN53_RS07630 PF16363 GDP-mannose 4,6 dehydratase BEN53_RS07640 PF16363 GDP-mannose 4,6 dehydratase BEN53_RS07645 PF01370 NAD dependent epimerase/dehydratase family BEN53_RS07650 PF00293 NUDIX domain BEN53_RS07655 PF00483 Nucleotidyl transferase BEN53_RS07655 PF01050 Mannose-6-phosphate isomerase BEN53_RS07660 PF00535 Glycosyl transferase family 2 BEN53_RS07665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEN53_RS07665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEN53_RS07665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEN53_RS07665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEN53_RS07670 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BEN53_RS07670 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain BEN53_RS07675 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BEN53_RS07675 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BEN53_RS07675 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BEN53_RS07680 PF02706 Chain length determinant protein BEN53_RS07685 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BEN53_RS07685 PF01502 Phosphoribosyl-AMP cyclohydrolase BEN53_RS07690 PF00977 Histidine biosynthesis protein BEN53_RS07695 PF00977 Histidine biosynthesis protein BEN53_RS07700 PF00117 Glutamine amidotransferase class-I BEN53_RS07705 PF00475 Imidazoleglycerol-phosphate dehydratase BEN53_RS07710 PF00155 Aminotransferase class I and II BEN53_RS07715 PF00815 Histidinol dehydrogenase BEN53_RS07720 PF08029 HisG, C-terminal domain BEN53_RS07720 PF01634 ATP phosphoribosyltransferase BEN53_RS07735 PF01370 NAD dependent epimerase/dehydratase family BEN53_RS07740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS07740 PF03466 LysR substrate binding domain BEN53_RS07750 PF13520 Amino acid permease BEN53_RS07755 PF04143 Sulphur transport BEN53_RS07760 PF01206 Sulfurtransferase TusA BEN53_RS07765 PF00929 Exonuclease BEN53_RS07765 PF08411 Exonuclease C-terminal BEN53_RS07770 PF07943 Penicillin-binding protein 5, C-terminal domain BEN53_RS07770 PF00768 D-alanyl-D-alanine carboxypeptidase BEN53_RS07775 PF06445 GyrI-like small molecule binding domain BEN53_RS07780 PF04632 Fusaric acid resistance protein family BEN53_RS07785 PF04363 Protein of unknown function (DUF496) BEN53_RS07790 PF10662 Ethanolamine utilisation - propanediol utilisation BEN53_RS07795 PF00936 BMC domain BEN53_RS07805 PF13237 4Fe-4S dicluster domain BEN53_RS07805 PF13375 RnfC Barrel sandwich hybrid domain BEN53_RS07805 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BEN53_RS07805 PF10531 SLBB domain BEN53_RS07810 PF00171 Aldehyde dehydrogenase family BEN53_RS07810 PF00465 Iron-containing alcohol dehydrogenase BEN53_RS07815 PF00171 Aldehyde dehydrogenase family BEN53_RS07820 PF01923 Cobalamin adenosyltransferase BEN53_RS07825 PF03319 Ethanolamine utilisation protein EutN/carboxysome BEN53_RS07835 PF06130 Phosphate propanoyltransferase BEN53_RS07840 PF00936 BMC domain BEN53_RS07845 PF00936 BMC domain BEN53_RS07855 PF18427 DD-reactivating factor swiveling domain BEN53_RS07855 PF08841 Diol dehydratase reactivase ATPase-like domain BEN53_RS07860 PF02287 Dehydratase small subunit BEN53_RS07865 PF02288 Dehydratase medium subunit BEN53_RS07870 PF02286 Dehydratase large subunit BEN53_RS07875 PF00936 BMC domain BEN53_RS07880 PF00936 BMC domain BEN53_RS07885 PF00230 Major intrinsic protein BEN53_RS07890 PF10114 Sensory domain found in PocR BEN53_RS07890 PF12833 Helix-turn-helix domain BEN53_RS07895 PF01890 Cobalamin synthesis G C-terminus BEN53_RS07895 PF11760 Cobalamin synthesis G N-terminal BEN53_RS07895 PF11761 Cobalamin biosynthesis central region BEN53_RS07900 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase BEN53_RS07905 PF02654 Cobalamin-5-phosphate synthase BEN53_RS07910 PF02277 Phosphoribosyltransferase BEN53_RS07915 PF03734 L,D-transpeptidase catalytic domain BEN53_RS07915 PF17969 L,D-transpeptidase C-terminal domain BEN53_RS07925 PF01554 MatE BEN53_RS07955 PF01381 Helix-turn-helix BEN53_RS07960 PF13693 Winged helix-turn-helix DNA-binding BEN53_RS07980 PF03527 RHS protein BEN53_RS07980 PF05593 RHS Repeat BEN53_RS07990 PF05593 RHS Repeat BEN53_RS07990 PF03527 RHS protein BEN53_RS08005 PF05973 Phage derived protein Gp49-like (DUF891) BEN53_RS08010 PF00589 Phage integrase family BEN53_RS08010 PF13356 Arm DNA-binding domain BEN53_RS08020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS08020 PF03466 LysR substrate binding domain BEN53_RS08025 PF03466 LysR substrate binding domain BEN53_RS08025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS08050 PF13808 DDE_Tnp_1-associated BEN53_RS08050 PF01609 Transposase DDE domain BEN53_RS08065 PF03527 RHS protein BEN53_RS08065 PF05593 RHS Repeat BEN53_RS08085 PF03527 RHS protein BEN53_RS08085 PF05593 RHS Repeat BEN53_RS08095 PF04717 Type VI secretion system, phage-baseplate injector BEN53_RS08100 PF05638 Type VI secretion system effector, Hcp BEN53_RS08110 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath BEN53_RS08140 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE BEN53_RS08150 PF07724 AAA domain (Cdc48 subfamily) BEN53_RS08150 PF00004 ATPase family associated with various cellular activities (AAA) BEN53_RS08150 PF10431 C-terminal, D2-small domain, of ClpB protein BEN53_RS08150 PF17871 AAA lid domain BEN53_RS08165 PF06744 Type VI secretion protein IcmF C-terminal BEN53_RS08165 PF06761 Intracellular multiplication and human macrophage-killing BEN53_RS08165 PF14331 ImcF-related N-terminal domain BEN53_RS08175 PF05638 Type VI secretion system effector, Hcp BEN53_RS08205 PF00589 Phage integrase family BEN53_RS08205 PF13356 Arm DNA-binding domain BEN53_RS08215 PF06167 Glucose-regulated metallo-peptidase M90 BEN53_RS08255 PF00816 H-NS histone family BEN53_RS08265 PF05732 Firmicute plasmid replication protein (RepL) BEN53_RS08360 PF13356 Arm DNA-binding domain BEN53_RS08360 PF00589 Phage integrase family BEN53_RS08370 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment BEN53_RS08375 PF01794 Ferric reductase like transmembrane component BEN53_RS08380 PF00174 Oxidoreductase molybdopterin binding domain BEN53_RS08385 PF00576 HIUase/Transthyretin family BEN53_RS08390 PF00072 Response regulator receiver domain BEN53_RS08390 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS08395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS08395 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS08410 PF00267 Gram-negative porin BEN53_RS08425 PF01966 HD domain BEN53_RS08430 PF18284 DNA methylase N-terminal domain BEN53_RS08430 PF00145 C-5 cytosine-specific DNA methylase BEN53_RS08435 PF03852 DNA mismatch endonuclease Vsr BEN53_RS08440 PF00892 EamA-like transporter family BEN53_RS08445 PF05661 Protein of unknown function (DUF808) BEN53_RS08450 PF09926 Uncharacterized small protein (DUF2158) BEN53_RS08460 PF17151 Periplasmic sensor domain BEN53_RS08460 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS08470 PF10733 Protein of unknown function (DUF2525) BEN53_RS08475 PF10781 Dextransucrase DSRB BEN53_RS08480 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS08485 PF01311 Bacterial export proteins, family 1 BEN53_RS08490 PF01313 Bacterial export proteins, family 3 BEN53_RS08495 PF00813 FliP family BEN53_RS08500 PF04347 Flagellar biosynthesis protein, FliO BEN53_RS08505 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BEN53_RS08505 PF16973 Flagellar motor switch protein FliN N-terminal BEN53_RS08510 PF02154 Flagellar motor switch protein FliM BEN53_RS08510 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BEN53_RS08515 PF03748 Flagellar basal body-associated protein FliL BEN53_RS08520 PF02120 Flagellar hook-length control protein FliK BEN53_RS08525 PF02050 Flagellar FliJ protein BEN53_RS08530 PF18269 T3SS EscN ATPase C-terminal domain BEN53_RS08530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEN53_RS08535 PF02108 Flagellar assembly protein FliH BEN53_RS08540 PF14841 FliG middle domain BEN53_RS08540 PF01706 FliG C-terminal domain BEN53_RS08540 PF14842 FliG N-terminal domain BEN53_RS08545 PF01514 Secretory protein of YscJ/FliF family BEN53_RS08545 PF08345 Flagellar M-ring protein C-terminal BEN53_RS08550 PF02049 Flagellar hook-basal body complex protein FliE BEN53_RS08560 PF02586 SOS response associated peptidase (SRAP) BEN53_RS08565 PF01206 Sulfurtransferase TusA BEN53_RS08570 PF04143 Sulphur transport BEN53_RS08580 PF13987 YedD-like protein BEN53_RS08585 PF02806 Alpha amylase, C-terminal all-beta domain BEN53_RS08585 PF00128 Alpha amylase, catalytic domain BEN53_RS08590 PF05400 Flagellar protein FliT BEN53_RS08595 PF02561 Flagellar protein FliS BEN53_RS08600 PF02465 Flagellar hook-associated protein 2 N-terminus BEN53_RS08600 PF07195 Flagellar hook-associated protein 2 C-terminus BEN53_RS08605 PF00700 Bacterial flagellin C-terminal helical region BEN53_RS08605 PF00669 Bacterial flagellin N-terminal helical region BEN53_RS08605 PF12445 Flagellin protein BEN53_RS08610 PF04539 Sigma-70 region 3 BEN53_RS08610 PF04542 Sigma-70 region 2 BEN53_RS08610 PF04545 Sigma-70, region 4 BEN53_RS08615 PF02899 Phage integrase, N-terminal SAM-like domain BEN53_RS08620 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS08625 PF00291 Pyridoxal-phosphate dependent enzyme BEN53_RS08630 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS08635 PF00005 ABC transporter BEN53_RS08640 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS08640 PF03472 Autoinducer binding domain BEN53_RS08645 PF10769 Protein of unknown function (DUF2594) BEN53_RS08650 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS08650 PF00072 Response regulator receiver domain BEN53_RS08655 PF01541 GIY-YIG catalytic domain BEN53_RS08655 PF08459 UvrC Helix-hairpin-helix N-terminal BEN53_RS08655 PF02151 UvrB/uvrC motif BEN53_RS08660 PF01066 CDP-alcohol phosphatidyltransferase BEN53_RS08680 PF02810 SEC-C motif BEN53_RS08680 PF03695 Uncharacterised protein family (UPF0149) BEN53_RS08685 PF03222 Tryptophan/tyrosine permease family BEN53_RS08690 PF10678 Protein of unknown function (DUF2492) BEN53_RS08695 PF00210 Ferritin-like domain BEN53_RS08700 PF13992 YecR-like lipoprotein BEN53_RS08715 PF10964 Protein of unknown function (DUF2766) BEN53_RS08720 PF00210 Ferritin-like domain BEN53_RS08730 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BEN53_RS08735 PF00005 ABC transporter BEN53_RS08740 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS08745 PF02358 Trehalose-phosphatase BEN53_RS08750 PF00982 Glycosyltransferase family 20 BEN53_RS08755 PF00582 Universal stress protein family BEN53_RS08760 PF05247 Flagellar transcriptional activator (FlhD) BEN53_RS08765 PF05280 Flagellar transcriptional activator (FlhC) BEN53_RS08770 PF01618 MotA/TolQ/ExbB proton channel family BEN53_RS08775 PF00691 OmpA family BEN53_RS08775 PF13677 Membrane MotB of proton-channel complex MotA/MotB BEN53_RS08780 PF02895 Signal transducing histidine kinase, homodimeric domain BEN53_RS08780 PF09078 CheY binding BEN53_RS08780 PF01584 CheW-like domain BEN53_RS08780 PF01627 Hpt domain BEN53_RS08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS08785 PF01584 CheW-like domain BEN53_RS08790 PF00672 HAMP domain BEN53_RS08790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN53_RS08790 PF02203 Tar ligand binding domain homologue BEN53_RS08795 PF00672 HAMP domain BEN53_RS08795 PF02203 Tar ligand binding domain homologue BEN53_RS08795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN53_RS08800 PF01739 CheR methyltransferase, SAM binding domain BEN53_RS08800 PF03705 CheR methyltransferase, all-alpha domain BEN53_RS08805 PF00072 Response regulator receiver domain BEN53_RS08805 PF01339 CheB methylesterase BEN53_RS08810 PF00072 Response regulator receiver domain BEN53_RS08815 PF04344 Chemotaxis phosphatase, CheZ BEN53_RS08820 PF01312 FlhB HrpN YscU SpaS Family BEN53_RS08825 PF00771 FHIPEP family BEN53_RS08830 PF06366 Flagellar protein FlhE BEN53_RS08835 PF05746 DALR anticodon binding domain BEN53_RS08835 PF00750 tRNA synthetases class I (R) BEN53_RS08835 PF03485 Arginyl tRNA synthetase N terminal domain BEN53_RS08845 PF06185 YecM protein BEN53_RS08850 PF03932 CutC family BEN53_RS08855 PF03264 NapC/NirT cytochrome c family, N-terminal region BEN53_RS08860 PF18364 Molybdopterin oxidoreductase N-terminal domain BEN53_RS08860 PF01568 Molydopterin dinucleotide binding domain BEN53_RS08860 PF00384 Molybdopterin oxidoreductase BEN53_RS08865 PF08003 Protein of unknown function (DUF1698) BEN53_RS08870 PF13649 Methyltransferase domain BEN53_RS08875 PF01124 MAPEG family BEN53_RS08880 PF01904 Protein of unknown function DUF72 BEN53_RS08885 PF00857 Isochorismatase family BEN53_RS08890 PF00152 tRNA synthetases class II (D, K and N) BEN53_RS08890 PF02938 GAD domain BEN53_RS08890 PF01336 OB-fold nucleic acid binding domain BEN53_RS08895 PF00293 NUDIX domain BEN53_RS08900 PF01709 Transcriptional regulator BEN53_RS08905 PF02075 Crossover junction endodeoxyribonuclease RuvC BEN53_RS08910 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family BEN53_RS08920 PF01330 RuvA N terminal domain BEN53_RS08920 PF07499 RuvA, C-terminal domain BEN53_RS08925 PF17864 RuvB AAA lid domain BEN53_RS08925 PF05491 RuvB C-terminal winged helix domain BEN53_RS08925 PF05496 Holliday junction DNA helicase RuvB P-loop domain BEN53_RS08940 PF00950 ABC 3 transport family BEN53_RS08945 PF00005 ABC transporter BEN53_RS08950 PF01297 Zinc-uptake complex component A periplasmic BEN53_RS08955 PF08525 Opacity-associated protein A N-terminal motif BEN53_RS08955 PF01551 Peptidase family M23 BEN53_RS08955 PF01476 LysM domain BEN53_RS08960 PF03279 Bacterial lipid A biosynthesis acyltransferase BEN53_RS08965 PF00224 Pyruvate kinase, barrel domain BEN53_RS08965 PF02887 Pyruvate kinase, alpha/beta domain BEN53_RS08970 PF01380 SIS domain BEN53_RS08970 PF01418 Helix-turn-helix domain, rpiR family BEN53_RS08975 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain BEN53_RS08975 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain BEN53_RS08980 PF00920 Dehydratase family BEN53_RS08985 PF01081 KDPG and KHG aldolase BEN53_RS08990 PF02222 ATP-grasp domain BEN53_RS08995 PF07130 YebG protein BEN53_RS09000 PF13995 YebF-like protein BEN53_RS09005 PF04391 Protein of unknown function (DUF533) BEN53_RS09010 PF00326 Prolyl oligopeptidase family BEN53_RS09010 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BEN53_RS09015 PF00929 Exonuclease BEN53_RS09020 PF00795 Carbon-nitrogen hydrolase BEN53_RS09025 PF06440 DNA polymerase III, theta subunit BEN53_RS09030 PF04234 CopC domain BEN53_RS09035 PF05425 Copper resistance protein D BEN53_RS09040 PF10709 Protein of unknown function (DUF2511) BEN53_RS09045 PF00149 Calcineurin-like phosphoesterase BEN53_RS09050 PF07358 Protein of unknown function (DUF1482) BEN53_RS09055 PF07351 Protein of unknown function (DUF1480) BEN53_RS09060 PF01189 16S rRNA methyltransferase RsmB/F BEN53_RS09060 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BEN53_RS09060 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BEN53_RS09065 PF02470 MlaD protein BEN53_RS09070 PF04403 Paraquat-inducible protein A BEN53_RS09075 PF13185 GAF domain BEN53_RS09080 PF17516 ProQ C-terminal domain BEN53_RS09080 PF04352 ProQ/FINO family BEN53_RS09085 PF11818 C-terminal domain of tail specific protease (DUF3340) BEN53_RS09085 PF03572 Peptidase family S41 BEN53_RS09085 PF17804 Tail specific protease N-terminal domain BEN53_RS09085 PF00595 PDZ domain BEN53_RS09090 PF01435 Peptidase family M48 BEN53_RS09095 PF07690 Major Facilitator Superfamily BEN53_RS09100 PF01614 Bacterial transcriptional regulator BEN53_RS09100 PF09339 IclR helix-turn-helix domain BEN53_RS09105 PF13996 YobH-like protein BEN53_RS09110 PF13998 MgrB protein BEN53_RS09115 PF13974 YebO-like protein BEN53_RS09125 PF10736 Protein of unknown function (DUF2627) BEN53_RS09130 PF00313 'Cold-shock' DNA-binding domain BEN53_RS09135 PF13847 Methyltransferase domain BEN53_RS09140 PF02659 Putative manganese efflux pump BEN53_RS09150 PF06173 Protein of unknown function (DUF986) BEN53_RS09155 PF03613 PTS system mannose/fructose/sorbose family IID component BEN53_RS09160 PF03609 PTS system sorbose-specific iic component BEN53_RS09165 PF03830 PTS system sorbose subfamily IIB component BEN53_RS09165 PF03610 PTS system fructose IIA component BEN53_RS09180 PF03741 Integral membrane protein TerC family BEN53_RS09180 PF03471 Transporter associated domain BEN53_RS09185 PF12792 CSS motif domain associated with EAL BEN53_RS09185 PF00563 EAL domain BEN53_RS09190 PF03313 Serine dehydratase alpha chain BEN53_RS09190 PF03315 Serine dehydratase beta chain BEN53_RS09195 PF00293 NUDIX domain BEN53_RS09200 PF04715 Anthranilate synthase component I, N terminal region BEN53_RS09200 PF00425 chorismate binding enzyme BEN53_RS09205 PF03701 Uncharacterised protein family (UPF0181) BEN53_RS09210 PF08986 Domain of unknown function (DUF1889) BEN53_RS09215 PF01042 Endoribonuclease L-PSP BEN53_RS09220 PF13307 Helicase C-terminal domain BEN53_RS09220 PF04851 Type III restriction enzyme, res subunit BEN53_RS09225 PF00814 Glycoprotease family BEN53_RS09230 PF03843 Outer membrane lipoprotein Slp family BEN53_RS09235 PF13193 AMP-binding enzyme C-terminal domain BEN53_RS09235 PF00501 AMP-binding enzyme BEN53_RS09240 PF00570 HRDC domain BEN53_RS09240 PF01612 3'-5' exonuclease BEN53_RS09245 PF00111 2Fe-2S iron-sulfur cluster binding domain BEN53_RS09245 PF00970 Oxidoreductase FAD-binding domain BEN53_RS09245 PF00175 Oxidoreductase NAD-binding domain BEN53_RS09250 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BEN53_RS09250 PF00355 Rieske [2Fe-2S] domain BEN53_RS09255 PF02028 BCCT, betaine/carnitine/choline family transporter BEN53_RS09260 PF00180 Isocitrate/isopropylmalate dehydrogenase BEN53_RS09265 PF03466 LysR substrate binding domain BEN53_RS09265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS09270 PF01810 LysE type translocator BEN53_RS09275 PF09313 Domain of unknown function (DUF1971) BEN53_RS09280 PF08956 Domain of unknown function (DUF1869) BEN53_RS09285 PF04226 Transglycosylase associated protein BEN53_RS09300 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS09300 PF13185 GAF domain BEN53_RS09305 PF03891 Domain of unknown function (DUF333) BEN53_RS09310 PF04343 Protein of unknown function, DUF488 BEN53_RS09315 PF07690 Major Facilitator Superfamily BEN53_RS09320 PF12833 Helix-turn-helix domain BEN53_RS09320 PF02311 AraC-like ligand binding domain BEN53_RS09325 PF04284 Protein of unknown function (DUF441) BEN53_RS09335 PF04073 Aminoacyl-tRNA editing domain BEN53_RS09340 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS09340 PF17155 Gammaproteobacterial periplasmic sensor domain BEN53_RS09345 PF17158 Membrane-associated sensor, integral membrane domain BEN53_RS09345 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS09350 PF04285 Protein of unknown function (DUF444) BEN53_RS09355 PF06798 PrkA serine protein kinase C-terminal domain BEN53_RS09355 PF08298 PrkA AAA domain BEN53_RS09360 PF06629 MltA-interacting protein MipA BEN53_RS09365 PF00248 Aldo/keto reductase family BEN53_RS09370 PF01263 Aldose 1-epimerase BEN53_RS09375 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BEN53_RS09375 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEN53_RS09380 PF01641 SelR domain BEN53_RS09385 PF07023 Protein of unknown function (DUF1315) BEN53_RS09390 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS09390 PF00107 Zinc-binding dehydrogenase BEN53_RS09395 PF00083 Sugar (and other) transporter BEN53_RS09400 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS09400 PF00107 Zinc-binding dehydrogenase BEN53_RS09405 PF01116 Fructose-bisphosphate aldolase class-II BEN53_RS09410 PF00294 pfkB family carbohydrate kinase BEN53_RS09415 PF00248 Aldo/keto reductase family BEN53_RS09420 PF00455 DeoR C terminal sensor domain BEN53_RS09420 PF08220 DeoR-like helix-turn-helix domain BEN53_RS09425 PF00083 Sugar (and other) transporter BEN53_RS09430 PF00857 Isochorismatase family BEN53_RS09435 PF00710 Asparaginase, N-terminal BEN53_RS09435 PF17763 Glutaminase/Asparaginase C-terminal domain BEN53_RS09440 PF01343 Peptidase family S49 BEN53_RS09450 PF00881 Nitroreductase family BEN53_RS09460 PF00586 AIR synthase related protein, N-terminal domain BEN53_RS09460 PF02769 AIR synthase related protein, C-terminal domain BEN53_RS09465 PF01751 Toprim domain BEN53_RS09465 PF01131 DNA topoisomerase BEN53_RS09470 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BEN53_RS09470 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEN53_RS09475 PF07383 Protein of unknown function (DUF1496) BEN53_RS09480 PF00293 NUDIX domain BEN53_RS09485 PF01066 CDP-alcohol phosphatidyltransferase BEN53_RS09490 PF00581 Rhodanese-like domain BEN53_RS09495 PF00005 ABC transporter BEN53_RS09500 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS09505 PF13416 Bacterial extracellular solute-binding protein BEN53_RS09510 PF02627 Carboxymuconolactone decarboxylase family BEN53_RS09515 PF09335 SNARE associated Golgi protein BEN53_RS09525 PF09335 SNARE associated Golgi protein BEN53_RS09530 PF03372 Endonuclease/Exonuclease/phosphatase family BEN53_RS09540 PF00202 Aminotransferase class-III BEN53_RS09545 PF04958 Arginine N-succinyltransferase beta subunit BEN53_RS09550 PF00171 Aldehyde dehydrogenase family BEN53_RS09555 PF04996 Succinylarginine dihydrolase BEN53_RS09560 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BEN53_RS09565 PF07813 LTXXQ motif family protein BEN53_RS09570 PF05962 HutD BEN53_RS09585 PF02540 NAD synthase BEN53_RS09590 PF04355 SmpA / OmlA family BEN53_RS09600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS09605 PF02378 Phosphotransferase system, EIIC BEN53_RS09610 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BEN53_RS09615 PF12833 Helix-turn-helix domain BEN53_RS09615 PF07883 Cupin domain BEN53_RS09620 PF02056 Family 4 glycosyl hydrolase BEN53_RS09620 PF11975 Family 4 glycosyl hydrolase C-terminal domain BEN53_RS09625 PF04794 YdjC-like protein BEN53_RS09630 PF18011 C-terminal domain found in long catalases BEN53_RS09630 PF06628 Catalase-related immune-responsive BEN53_RS09630 PF00199 Catalase BEN53_RS09635 PF10729 Cell division activator CedA BEN53_RS09645 PF00375 Sodium:dicarboxylate symporter family BEN53_RS09650 PF04307 LexA-binding, inner membrane-associated putative hydrolase BEN53_RS09655 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS09660 PF14002 YniB-like protein BEN53_RS09665 PF03881 Fructosamine kinase BEN53_RS09670 PF11080 Endoribonuclease GhoS BEN53_RS09675 PF00294 pfkB family carbohydrate kinase BEN53_RS09680 PF04338 Protein of unknown function, DUF481 BEN53_RS09695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEN53_RS09695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BEN53_RS09695 PF02824 TGS domain BEN53_RS09695 PF03129 Anticodon binding domain BEN53_RS09700 PF05198 Translation initiation factor IF-3, N-terminal domain BEN53_RS09700 PF00707 Translation initiation factor IF-3, C-terminal domain BEN53_RS09705 PF01632 Ribosomal protein L35 BEN53_RS09710 PF00453 Ribosomal protein L20 BEN53_RS09720 PF01409 tRNA synthetases class II core domain (F) BEN53_RS09720 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BEN53_RS09725 PF03147 Ferredoxin-fold anticodon binding domain BEN53_RS09725 PF01588 Putative tRNA binding domain BEN53_RS09725 PF03484 tRNA synthetase B5 domain BEN53_RS09725 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BEN53_RS09725 PF03483 B3/4 domain BEN53_RS09730 PF00216 Bacterial DNA-binding protein BEN53_RS09735 PF01032 FecCD transport family BEN53_RS09740 PF00255 Glutathione peroxidase BEN53_RS09745 PF00005 ABC transporter BEN53_RS09750 PF00877 NlpC/P60 family BEN53_RS09755 PF00563 EAL domain BEN53_RS09760 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BEN53_RS09765 PF10636 Hemin uptake protein hemP BEN53_RS09770 PF00793 DAHP synthetase I family BEN53_RS09775 PF03618 Kinase/pyrophosphorylase BEN53_RS09785 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BEN53_RS09785 PF00391 PEP-utilising enzyme, mobile domain BEN53_RS09785 PF02896 PEP-utilising enzyme, TIM barrel domain BEN53_RS09790 PF00939 Sodium:sulfate symporter transmembrane region BEN53_RS09795 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN53_RS09795 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEN53_RS09810 PF13193 AMP-binding enzyme C-terminal domain BEN53_RS09810 PF00501 AMP-binding enzyme BEN53_RS09820 PF01494 FAD binding domain BEN53_RS09825 PF01012 Electron transfer flavoprotein domain BEN53_RS09825 PF00766 Electron transfer flavoprotein FAD-binding domain BEN53_RS09830 PF01012 Electron transfer flavoprotein domain BEN53_RS09840 PF12833 Helix-turn-helix domain BEN53_RS09840 PF02311 AraC-like ligand binding domain BEN53_RS09845 PF02770 Acyl-CoA dehydrogenase, middle domain BEN53_RS09845 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BEN53_RS09845 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BEN53_RS09850 PF01144 Coenzyme A transferase BEN53_RS09855 PF01487 Type I 3-dehydroquinase BEN53_RS09860 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BEN53_RS09860 PF08501 Shikimate dehydrogenase substrate binding domain BEN53_RS09865 PF07690 Major Facilitator Superfamily BEN53_RS09870 PF07690 Major Facilitator Superfamily BEN53_RS09875 PF08965 Domain of unknown function (DUF1870) BEN53_RS09885 PF01594 AI-2E family transporter BEN53_RS09890 PF02913 FAD linked oxidases, C-terminal domain BEN53_RS09890 PF13183 4Fe-4S dicluster domain BEN53_RS09890 PF01565 FAD binding domain BEN53_RS09895 PF03061 Thioesterase superfamily BEN53_RS09900 PF15930 Domain of unknown function BEN53_RS09905 PF01521 Iron-sulphur cluster biosynthesis BEN53_RS09910 PF01458 Uncharacterized protein family (UPF0051) BEN53_RS09915 PF00005 ABC transporter BEN53_RS09920 PF01458 Uncharacterized protein family (UPF0051) BEN53_RS09925 PF00266 Aminotransferase class-V BEN53_RS09930 PF02657 Fe-S metabolism associated domain BEN53_RS09935 PF01476 LysM domain BEN53_RS09935 PF17969 L,D-transpeptidase C-terminal domain BEN53_RS09935 PF03734 L,D-transpeptidase catalytic domain BEN53_RS09940 PF04728 Lipoprotein leucine-zipper BEN53_RS09945 PF02887 Pyruvate kinase, alpha/beta domain BEN53_RS09945 PF00224 Pyruvate kinase, barrel domain BEN53_RS09950 PF10965 Protein of unknown function (DUF2767) BEN53_RS09955 PF13247 4Fe-4S dicluster domain BEN53_RS09955 PF12800 4Fe-4S binding domain BEN53_RS09960 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain BEN53_RS09960 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 BEN53_RS09970 PF13247 4Fe-4S dicluster domain BEN53_RS09975 PF01292 Prokaryotic cytochrome b561 BEN53_RS09985 PF13454 FAD-NAD(P)-binding BEN53_RS09990 PF08803 Putative mono-oxygenase ydhR BEN53_RS10005 PF16168 Adhesin of bacterial autotransporter system, probable stalk BEN53_RS10005 PF03212 Pertactin BEN53_RS10010 PF01554 MatE BEN53_RS10015 PF00677 Lumazine binding domain BEN53_RS10025 PF07690 Major Facilitator Superfamily BEN53_RS10030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS10030 PF03466 LysR substrate binding domain BEN53_RS10035 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS10050 PF07690 Major Facilitator Superfamily BEN53_RS10055 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BEN53_RS10055 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BEN53_RS10060 PF00877 NlpC/P60 family BEN53_RS10065 PF00462 Glutaredoxin BEN53_RS10070 PF00271 Helicase conserved C-terminal domain BEN53_RS10070 PF00270 DEAD/DEAH box helicase BEN53_RS10070 PF08494 DEAD/H associated BEN53_RS10075 PF00929 Exonuclease BEN53_RS10080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN53_RS10085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BEN53_RS10090 PF16925 Tetracyclin repressor-like, C-terminal domain BEN53_RS10090 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS10095 PF06945 Protein of unknown function (DUF1289) BEN53_RS10100 PF00248 Aldo/keto reductase family BEN53_RS10105 PF00080 Copper/zinc superoxide dismutase (SODC) BEN53_RS10110 PF04632 Fusaric acid resistance protein family BEN53_RS10115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS10115 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS10120 PF07869 Protein of unknown function (DUF1656) BEN53_RS10125 PF01047 MarR family BEN53_RS10130 PF05433 Glycine zipper 2TM domain BEN53_RS10135 PF03702 Anhydro-N-acetylmuramic acid kinase BEN53_RS10140 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme BEN53_RS10145 PF01243 Pyridoxamine 5'-phosphate oxidase BEN53_RS10145 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BEN53_RS10150 PF00579 tRNA synthetases class I (W and Y) BEN53_RS10150 PF01479 S4 domain BEN53_RS10155 PF08543 Phosphomethylpyrimidine kinase BEN53_RS10160 PF02798 Glutathione S-transferase, N-terminal domain BEN53_RS10160 PF00043 Glutathione S-transferase, C-terminal domain BEN53_RS10165 PF00854 POT family BEN53_RS10175 PF00633 Helix-hairpin-helix motif BEN53_RS10175 PF00730 HhH-GPD superfamily base excision DNA repair protein BEN53_RS10175 PF10576 Iron-sulfur binding domain of endonuclease III BEN53_RS10180 PF02508 Rnf-Nqr subunit, membrane protein BEN53_RS10185 PF04205 FMN-binding domain BEN53_RS10190 PF03116 NQR2, RnfD, RnfE family BEN53_RS10195 PF12838 4Fe-4S dicluster domain BEN53_RS10195 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BEN53_RS10195 PF13375 RnfC Barrel sandwich hybrid domain BEN53_RS10195 PF10531 SLBB domain BEN53_RS10200 PF04060 Putative Fe-S cluster BEN53_RS10205 PF02508 Rnf-Nqr subunit, membrane protein BEN53_RS10210 PF10754 Protein of unknown function (DUF2569) BEN53_RS10215 PF05321 Haemolysin expression modulating protein BEN53_RS10230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEN53_RS10230 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEN53_RS10235 PF00962 Adenosine/AMP deaminase BEN53_RS10240 PF00155 Aminotransferase class I and II BEN53_RS10245 PF02378 Phosphotransferase system, EIIC BEN53_RS10245 PF00367 phosphotransferase system, EIIB BEN53_RS10250 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS10250 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BEN53_RS10260 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS10265 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BEN53_RS10265 PF02837 Glycosyl hydrolases family 2, sugar binding domain BEN53_RS10265 PF00703 Glycosyl hydrolases family 2 BEN53_RS10275 PF03573 outer membrane porin, OprD family BEN53_RS10280 PF06097 Bacterial protein of unknown function (DUF945) BEN53_RS10285 PF01238 Phosphomannose isomerase type I BEN53_RS10290 PF05681 Fumarate hydratase (Fumerase) BEN53_RS10290 PF05683 Fumarase C-terminus BEN53_RS10295 PF00206 Lyase BEN53_RS10295 PF10415 Fumarase C C-terminus BEN53_RS10300 PF05472 DNA replication terminus site-binding protein (Ter protein) BEN53_RS10305 PF00672 HAMP domain BEN53_RS10305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS10305 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS10310 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS10310 PF00072 Response regulator receiver domain BEN53_RS10315 PF06942 GlpM protein BEN53_RS10325 PF13520 Amino acid permease BEN53_RS10335 PF07338 Protein of unknown function (DUF1471) BEN53_RS10340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BEN53_RS10340 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BEN53_RS10340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BEN53_RS10345 PF02233 NAD(P) transhydrogenase beta subunit BEN53_RS10350 PF01594 AI-2E family transporter BEN53_RS10360 PF00893 Small Multidrug Resistance protein BEN53_RS10365 PF00893 Small Multidrug Resistance protein BEN53_RS10370 PF00089 Trypsin BEN53_RS10390 PF07690 Major Facilitator Superfamily BEN53_RS10395 PF03466 LysR substrate binding domain BEN53_RS10395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS10400 PF00480 ROK family BEN53_RS10410 PF00654 Voltage gated chloride channel BEN53_RS10415 PF02613 Nitrate reductase delta subunit BEN53_RS10420 PF04976 DMSO reductase anchor subunit (DmsC) BEN53_RS10425 PF13247 4Fe-4S dicluster domain BEN53_RS10425 PF12800 4Fe-4S binding domain BEN53_RS10430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BEN53_RS10430 PF00384 Molybdopterin oxidoreductase BEN53_RS10430 PF01568 Molydopterin dinucleotide binding domain BEN53_RS10435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BEN53_RS10435 PF00384 Molybdopterin oxidoreductase BEN53_RS10435 PF01568 Molydopterin dinucleotide binding domain BEN53_RS10440 PF06649 Protein of unknown function (DUF1161) BEN53_RS10445 PF06788 Uncharacterised protein family (UPF0257) BEN53_RS10450 PF13302 Acetyltransferase (GNAT) domain BEN53_RS10455 PF06932 Protein of unknown function (DUF1283) BEN53_RS10460 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BEN53_RS10470 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN53_RS10470 PF13378 Enolase C-terminal domain-like BEN53_RS10475 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS10475 PF00107 Zinc-binding dehydrogenase BEN53_RS10480 PF00083 Sugar (and other) transporter BEN53_RS10480 PF07690 Major Facilitator Superfamily BEN53_RS10485 PF08125 Mannitol dehydrogenase C-terminal domain BEN53_RS10485 PF01232 Mannitol dehydrogenase Rossmann domain BEN53_RS10490 PF14001 YdfZ protein BEN53_RS10495 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS10495 PF07729 FCD domain BEN53_RS10500 PF00106 short chain dehydrogenase BEN53_RS10510 PF01432 Peptidase family M3 BEN53_RS10520 PF04076 Bacterial OB fold (BOF) protein BEN53_RS10525 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS10535 PF01965 DJ-1/PfpI family BEN53_RS10545 PF07690 Major Facilitator Superfamily BEN53_RS10550 PF00892 EamA-like transporter family BEN53_RS10555 PF07702 UTRA domain BEN53_RS10555 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS10560 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS10570 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit BEN53_RS10575 PF02264 LamB porin BEN53_RS10575 PF11471 Maltoporin periplasmic N-terminal extension BEN53_RS10580 PF00232 Glycosyl hydrolase family 1 BEN53_RS10585 PF13999 MarB protein BEN53_RS10590 PF12833 Helix-turn-helix domain BEN53_RS10595 PF01047 MarR family BEN53_RS10600 PF01914 MarC family integral membrane protein BEN53_RS10605 PF07690 Major Facilitator Superfamily BEN53_RS10615 PF03466 LysR substrate binding domain BEN53_RS10615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS10620 PF00171 Aldehyde dehydrogenase family BEN53_RS10625 PF04960 Glutaminase BEN53_RS10630 PF13811 Domain of unknown function (DUF4186) BEN53_RS10640 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS10650 PF08125 Mannitol dehydrogenase C-terminal domain BEN53_RS10650 PF01232 Mannitol dehydrogenase Rossmann domain BEN53_RS10655 PF01062 Bestrophin, RFP-TM, chloride channel BEN53_RS10660 PF13649 Methyltransferase domain BEN53_RS10665 PF03992 Antibiotic biosynthesis monooxygenase BEN53_RS10670 PF01791 DeoC/LacD family aldolase BEN53_RS10675 PF13407 Periplasmic binding protein domain BEN53_RS10680 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS10685 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS10690 PF00005 ABC transporter BEN53_RS10695 PF04198 Putative sugar-binding domain BEN53_RS10700 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN53_RS10700 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN53_RS10715 PF00419 Fimbrial protein BEN53_RS10720 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS10720 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS10725 PF00577 Outer membrane usher protein BEN53_RS10725 PF13953 PapC C-terminal domain BEN53_RS10725 PF13954 PapC N-terminal domain BEN53_RS10730 PF00419 Fimbrial protein BEN53_RS10735 PF00419 Fimbrial protein BEN53_RS10740 PF09160 FimH, mannose binding BEN53_RS10745 PF00384 Molybdopterin oxidoreductase BEN53_RS10750 PF17073 Two-component-system connector protein BEN53_RS10755 PF12833 Helix-turn-helix domain BEN53_RS10760 PF00884 Sulfatase BEN53_RS10765 PF04055 Radical SAM superfamily BEN53_RS10765 PF13186 Iron-sulfur cluster-binding domain BEN53_RS10770 PF00005 ABC transporter BEN53_RS10770 PF06472 ABC transporter transmembrane region 2 BEN53_RS10775 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS10780 PF00675 Insulinase (Peptidase family M16) BEN53_RS10780 PF05193 Peptidase M16 inactive domain BEN53_RS10785 PF00282 Pyridoxal-dependent decarboxylase conserved domain BEN53_RS10790 PF13520 Amino acid permease BEN53_RS10795 PF02638 Glycosyl hydrolase-like 10 BEN53_RS10800 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS10805 PF00563 EAL domain BEN53_RS10805 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS10805 PF13426 PAS domain BEN53_RS10810 PF01427 D-ala-D-ala dipeptidase BEN53_RS10815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS10820 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS10825 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS10825 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN53_RS10830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN53_RS10830 PF00005 ABC transporter BEN53_RS10835 PF00005 ABC transporter BEN53_RS10835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN53_RS10840 PF02566 OsmC-like protein BEN53_RS10850 PF10684 Putative biofilm-dependent modulation protein BEN53_RS10855 PF08136 30S ribosomal protein subunit S22 family BEN53_RS10860 PF03949 Malic enzyme, NAD binding domain BEN53_RS10860 PF00390 Malic enzyme, N-terminal domain BEN53_RS10865 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS10865 PF00107 Zinc-binding dehydrogenase BEN53_RS10870 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB BEN53_RS10875 PF01381 Helix-turn-helix BEN53_RS10880 PF01292 Prokaryotic cytochrome b561 BEN53_RS10885 PF09163 Formate dehydrogenase N, transmembrane BEN53_RS10885 PF12800 4Fe-4S binding domain BEN53_RS10885 PF13247 4Fe-4S dicluster domain BEN53_RS10895 PF00892 EamA-like transporter family BEN53_RS10900 PF00267 Gram-negative porin BEN53_RS10915 PF07690 Major Facilitator Superfamily BEN53_RS10920 PF14710 Respiratory nitrate reductase alpha N-terminal BEN53_RS10920 PF01568 Molydopterin dinucleotide binding domain BEN53_RS10920 PF00384 Molybdopterin oxidoreductase BEN53_RS10925 PF13247 4Fe-4S dicluster domain BEN53_RS10925 PF14711 Respiratory nitrate reductase beta C-terminal BEN53_RS10930 PF02613 Nitrate reductase delta subunit BEN53_RS10935 PF02665 Nitrate reductase gamma subunit BEN53_RS10940 PF02567 Phenazine biosynthesis-like protein BEN53_RS10955 PF00797 N-acetyltransferase BEN53_RS10960 PF01613 Flavin reductase like domain BEN53_RS10965 PF01361 Tautomerase enzyme BEN53_RS10970 PF14864 Alkyl sulfatase C-terminal BEN53_RS10970 PF14863 Alkyl sulfatase dimerisation BEN53_RS10970 PF00753 Metallo-beta-lactamase superfamily BEN53_RS10975 PF00360 Phytochrome region BEN53_RS10975 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS10975 PF01590 GAF domain BEN53_RS10975 PF00563 EAL domain BEN53_RS10980 PF13417 Glutathione S-transferase, N-terminal domain BEN53_RS10985 PF00324 Amino acid permease BEN53_RS11005 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS11005 PF00593 TonB dependent receptor BEN53_RS11010 PF07729 FCD domain BEN53_RS11010 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS11015 PF16884 N-terminal domain of oxidoreductase BEN53_RS11015 PF00107 Zinc-binding dehydrogenase BEN53_RS11020 PF00583 Acetyltransferase (GNAT) family BEN53_RS11025 PF04657 Putative inner membrane exporter, YdcZ BEN53_RS11030 PF10735 Protein of unknown function (DUF2526) BEN53_RS11035 PF10753 Toxin GhoT_OrtT BEN53_RS11050 PF00171 Aldehyde dehydrogenase family BEN53_RS11055 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS11060 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS11065 PF08402 TOBE domain BEN53_RS11065 PF00005 ABC transporter BEN53_RS11070 PF13416 Bacterial extracellular solute-binding protein BEN53_RS11075 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS11075 PF00155 Aminotransferase class I and II BEN53_RS11080 PF10829 Protein of unknown function (DUF2554) BEN53_RS11085 PF12392 Collagenase BEN53_RS11085 PF01136 Peptidase family U32 BEN53_RS11090 PF07883 Cupin domain BEN53_RS11090 PF01381 Helix-turn-helix BEN53_RS11095 PF03594 Benzoate membrane transport protein BEN53_RS11100 PF07282 Putative transposase DNA-binding domain BEN53_RS11100 PF12323 Helix-turn-helix domain BEN53_RS11100 PF01385 Probable transposase BEN53_RS11110 PF11769 Protein of unknown function (DUF3313) BEN53_RS11115 PF03848 Tellurite resistance protein TehB BEN53_RS11120 PF03595 Voltage-dependent anion channel BEN53_RS11125 PF18836 Beta solenoid repeat from YDCK BEN53_RS11130 PF13302 Acetyltransferase (GNAT) domain BEN53_RS11135 PF04325 Protein of unknown function (DUF465) BEN53_RS11145 PF04349 Periplasmic glucan biosynthesis protein, MdoG BEN53_RS11155 PF07063 Domain of unknown function (DUF1338) BEN53_RS11160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS11160 PF03466 LysR substrate binding domain BEN53_RS11165 PF00672 HAMP domain BEN53_RS11165 PF02203 Tar ligand binding domain homologue BEN53_RS11165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN53_RS11180 PF01848 Hok/gef family BEN53_RS11190 PF01292 Prokaryotic cytochrome b561 BEN53_RS11195 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEN53_RS11195 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BEN53_RS11200 PF00171 Aldehyde dehydrogenase family BEN53_RS11205 PF02698 DUF218 domain BEN53_RS11210 PF00271 Helicase conserved C-terminal domain BEN53_RS11210 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BEN53_RS11210 PF11898 Domain of unknown function (DUF3418) BEN53_RS11210 PF04408 Helicase associated domain (HA2) BEN53_RS11210 PF00270 DEAD/DEAH box helicase BEN53_RS11215 PF02525 Flavodoxin-like fold BEN53_RS11220 PF00782 Dual specificity phosphatase, catalytic domain BEN53_RS11225 PF12146 Serine aminopeptidase, S33 BEN53_RS11225 PF12147 Putative methyltransferase BEN53_RS11235 PF01066 CDP-alcohol phosphatidyltransferase BEN53_RS11240 PF10971 Protein of unknown function (DUF2773) BEN53_RS11245 PF00248 Aldo/keto reductase family BEN53_RS11250 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS11255 PF07848 PaaX-like protein BEN53_RS11255 PF08223 PaaX-like protein C-terminal domain BEN53_RS11260 PF14525 AraC-binding-like domain BEN53_RS11260 PF12833 Helix-turn-helix domain BEN53_RS11265 PF07027 Protein of unknown function (DUF1318) BEN53_RS11270 PF13617 YnbE-like lipoprotein BEN53_RS11275 PF11739 Dicarboxylate transport BEN53_RS11280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEN53_RS11280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN53_RS11285 PF03724 META domain BEN53_RS11290 PF03891 Domain of unknown function (DUF333) BEN53_RS11295 PF10371 Domain of unknown function BEN53_RS11295 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BEN53_RS11295 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BEN53_RS11295 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BEN53_RS11295 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN53_RS11300 PF00267 Gram-negative porin BEN53_RS11305 PF00582 Universal stress protein family BEN53_RS11310 PF01171 PP-loop family BEN53_RS11315 PF03880 DbpA RNA binding domain BEN53_RS11315 PF00270 DEAD/DEAH box helicase BEN53_RS11315 PF00271 Helicase conserved C-terminal domain BEN53_RS11325 PF01544 CorA-like Mg2+ transporter protein BEN53_RS11330 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS11330 PF08448 PAS fold BEN53_RS11335 PF01713 Smr domain BEN53_RS11345 PF03466 LysR substrate binding domain BEN53_RS11345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS11350 PF07687 Peptidase dimerisation domain BEN53_RS11350 PF01546 Peptidase family M20/M25/M40 BEN53_RS11355 PF01546 Peptidase family M20/M25/M40 BEN53_RS11365 PF03806 AbgT putative transporter family BEN53_RS11370 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BEN53_RS11370 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BEN53_RS11375 PF00325 Bacterial regulatory proteins, crp family BEN53_RS11375 PF00027 Cyclic nucleotide-binding domain BEN53_RS11380 PF00582 Universal stress protein family BEN53_RS11385 PF10749 Protein of unknown function (DUF2534) BEN53_RS11390 PF00924 Mechanosensitive ion channel BEN53_RS11395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS11400 PF00246 Zinc carboxypeptidase BEN53_RS11405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN53_RS11405 PF13378 Enolase C-terminal domain-like BEN53_RS11410 PF08534 Redoxin BEN53_RS11415 PF18024 Helix-turn-helix domain BEN53_RS11415 PF00158 Sigma-54 interaction domain BEN53_RS11415 PF13188 PAS domain BEN53_RS11420 PF05128 Domain of unknown function (DUF697) BEN53_RS11425 PF04317 YcjX-like family, DUF463 BEN53_RS11430 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BEN53_RS11430 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS11435 PF09381 Outer membrane protein G (OmpG) BEN53_RS11440 PF03459 TOBE domain BEN53_RS11440 PF00005 ABC transporter BEN53_RS11440 PF17912 MalK OB fold domain BEN53_RS11445 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS11450 PF03633 Glycosyl hydrolase family 65, C-terminal domain BEN53_RS11450 PF03632 Glycosyl hydrolase family 65 central catalytic domain BEN53_RS11450 PF03636 Glycosyl hydrolase family 65, N-terminal domain BEN53_RS11455 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEN53_RS11455 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEN53_RS11460 PF01261 Xylose isomerase-like TIM barrel BEN53_RS11465 PF00107 Zinc-binding dehydrogenase BEN53_RS11470 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS11475 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS11480 PF01547 Bacterial extracellular solute-binding protein BEN53_RS11485 PF00128 Alpha amylase, catalytic domain BEN53_RS11490 PF00581 Rhodanese-like domain BEN53_RS11495 PF09584 Phage shock protein PspD (Phageshock_PspD) BEN53_RS11500 PF04024 PspC domain BEN53_RS11505 PF06667 Phage shock protein B BEN53_RS11510 PF04012 PspA/IM30 family BEN53_RS11515 PF02954 Bacterial regulatory protein, Fis family BEN53_RS11515 PF00158 Sigma-54 interaction domain BEN53_RS11520 PF00202 Aminotransferase class-III BEN53_RS11525 PF01266 FAD dependent oxidoreductase BEN53_RS11530 PF00171 Aldehyde dehydrogenase family BEN53_RS11535 PF01381 Helix-turn-helix BEN53_RS11535 PF07883 Cupin domain BEN53_RS11540 PF07722 Peptidase C26 BEN53_RS11545 PF00120 Glutamine synthetase, catalytic domain BEN53_RS11550 PF00324 Amino acid permease BEN53_RS11555 PF10820 Protein of unknown function (DUF2543) BEN53_RS11565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS11570 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS11575 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS11575 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN53_RS11580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN53_RS11580 PF00005 ABC transporter BEN53_RS11585 PF00005 ABC transporter BEN53_RS11590 PF07690 Major Facilitator Superfamily BEN53_RS11595 PF02321 Outer membrane efflux protein BEN53_RS11605 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS11605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS11610 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS11610 PF16295 Tetracyclin repressor-like, C-terminal domain BEN53_RS11630 PF00575 S1 RNA binding domain BEN53_RS11630 PF08206 Ribonuclease B OB domain BEN53_RS11630 PF00773 RNB domain BEN53_RS11630 PF17876 Cold shock domain BEN53_RS11640 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS11640 PF00563 EAL domain BEN53_RS11640 PF13426 PAS domain BEN53_RS11650 PF00455 DeoR C terminal sensor domain BEN53_RS11650 PF08220 DeoR-like helix-turn-helix domain BEN53_RS11655 PF05433 Glycine zipper 2TM domain BEN53_RS11660 PF01253 Translation initiation factor SUI1 BEN53_RS11665 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BEN53_RS11670 PF18073 Rubredoxin metal binding domain BEN53_RS11675 PF06305 Lipopolysaccharide assembly protein A domain BEN53_RS11680 PF01569 PAP2 superfamily BEN53_RS11685 PF00925 GTP cyclohydrolase II BEN53_RS11690 PF00694 Aconitase C-terminal domain BEN53_RS11690 PF00330 Aconitase family (aconitate hydratase) BEN53_RS11715 PF03466 LysR substrate binding domain BEN53_RS11715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS11725 PF08272 Topoisomerase I zinc-ribbon-like BEN53_RS11725 PF01131 DNA topoisomerase BEN53_RS11725 PF01751 Toprim domain BEN53_RS11725 PF01396 Topoisomerase DNA binding C4 zinc finger BEN53_RS11735 PF10692 Protein of unknown function (DUF2498) BEN53_RS11740 PF01343 Peptidase family S49 BEN53_RS11740 PF08496 Peptidase family S49 N-terminal BEN53_RS11745 PF00106 short chain dehydrogenase BEN53_RS11750 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP BEN53_RS11750 PF12557 Cob(I)alamin adenosyltransferase N terminal BEN53_RS11765 PF01479 S4 domain BEN53_RS11765 PF00849 RNA pseudouridylate synthase BEN53_RS11770 PF09972 Predicted membrane protein (DUF2207) BEN53_RS11775 PF01300 Telomere recombination BEN53_RS11780 PF02811 PHP domain BEN53_RS11785 PF08255 Trp-operon Leader Peptide BEN53_RS11790 PF00425 chorismate binding enzyme BEN53_RS11790 PF04715 Anthranilate synthase component I, N terminal region BEN53_RS11795 PF02885 Glycosyl transferase family, helical bundle domain BEN53_RS11795 PF00117 Glutamine amidotransferase class-I BEN53_RS11795 PF00591 Glycosyl transferase family, a/b domain BEN53_RS11800 PF00218 Indole-3-glycerol phosphate synthase BEN53_RS11800 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BEN53_RS11805 PF00291 Pyridoxal-phosphate dependent enzyme BEN53_RS11810 PF00290 Tryptophan synthase alpha chain BEN53_RS11815 PF10685 Stress-induced bacterial acidophilic repeat motif BEN53_RS11820 PF05974 Domain of unknown function (DUF892) BEN53_RS11825 PF05974 Domain of unknown function (DUF892) BEN53_RS11830 PF03922 OmpW family BEN53_RS11845 PF04279 Intracellular septation protein A BEN53_RS11850 PF03061 Thioesterase superfamily BEN53_RS11855 PF03544 Gram-negative bacterial TonB protein C-terminal BEN53_RS11860 PF03795 YCII-related domain BEN53_RS11865 PF02254 TrkA-N domain BEN53_RS11865 PF07885 Ion channel BEN53_RS11875 PF13091 PLD-like domain BEN53_RS11875 PF13396 Phospholipase_D-nuclease N-terminal BEN53_RS11880 PF04269 Protein of unknown function, DUF440 BEN53_RS11885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN53_RS11885 PF00005 ABC transporter BEN53_RS11890 PF00005 ABC transporter BEN53_RS11890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN53_RS11895 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN53_RS11895 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS11900 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS11905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS11915 PF01914 MarC family integral membrane protein BEN53_RS11920 PF00171 Aldehyde dehydrogenase family BEN53_RS11920 PF00465 Iron-containing alcohol dehydrogenase BEN53_RS11930 PF00265 Thymidine kinase BEN53_RS11935 PF00816 H-NS histone family BEN53_RS11940 PF00483 Nucleotidyl transferase BEN53_RS11945 PF00072 Response regulator receiver domain BEN53_RS11950 PF01734 Patatin-like phospholipase BEN53_RS11955 PF02810 SEC-C motif BEN53_RS11960 PF00551 Formyl transferase BEN53_RS11960 PF01842 ACT domain BEN53_RS11985 PF02665 Nitrate reductase gamma subunit BEN53_RS11990 PF02613 Nitrate reductase delta subunit BEN53_RS11995 PF14711 Respiratory nitrate reductase beta C-terminal BEN53_RS11995 PF13247 4Fe-4S dicluster domain BEN53_RS12000 PF14710 Respiratory nitrate reductase alpha N-terminal BEN53_RS12000 PF00384 Molybdopterin oxidoreductase BEN53_RS12000 PF01568 Molydopterin dinucleotide binding domain BEN53_RS12005 PF07690 Major Facilitator Superfamily BEN53_RS12015 PF00672 HAMP domain BEN53_RS12015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS12015 PF07730 Histidine kinase BEN53_RS12015 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BEN53_RS12020 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS12020 PF00072 Response regulator receiver domain BEN53_RS12025 PF11924 Inverse autotransporter, beta-domain BEN53_RS12030 PF02635 DsrE/DsrF-like family BEN53_RS12035 PF04752 ChaC-like protein BEN53_RS12040 PF06150 ChaB BEN53_RS12045 PF01699 Sodium/calcium exchanger protein BEN53_RS12055 PF13940 Toxin Ldr, type I toxin-antitoxin system BEN53_RS12060 PF13940 Toxin Ldr, type I toxin-antitoxin system BEN53_RS12065 PF13940 Toxin Ldr, type I toxin-antitoxin system BEN53_RS12070 PF00793 DAHP synthetase I family BEN53_RS12075 PF13369 Transglutaminase-like superfamily BEN53_RS12080 PF04247 Invasion gene expression up-regulator, SirB BEN53_RS12085 PF13847 Methyltransferase domain BEN53_RS12085 PF17827 PrmC N-terminal domain BEN53_RS12090 PF03462 PCRF domain BEN53_RS12090 PF00472 RF-1 domain BEN53_RS12095 PF01488 Shikimate / quinate 5-dehydrogenase BEN53_RS12095 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BEN53_RS12095 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BEN53_RS12100 PF03550 Outer membrane lipoprotein LolB BEN53_RS12105 PF08544 GHMP kinases C terminal BEN53_RS12105 PF00288 GHMP kinases N terminal domain BEN53_RS12115 PF14572 Phosphoribosyl synthetase-associated domain BEN53_RS12115 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BEN53_RS12125 PF01740 STAS domain BEN53_RS12125 PF00916 Sulfate permease family BEN53_RS12130 PF10762 Protein of unknown function (DUF2583) BEN53_RS12135 PF01195 Peptidyl-tRNA hydrolase BEN53_RS12140 PF01926 50S ribosome-binding GTPase BEN53_RS12140 PF06071 Protein of unknown function (DUF933) BEN53_RS12150 PF00158 Sigma-54 interaction domain BEN53_RS12150 PF00989 PAS fold BEN53_RS12150 PF02954 Bacterial regulatory protein, Fis family BEN53_RS12155 PF02733 Dak1 domain BEN53_RS12160 PF02734 DAK2 domain BEN53_RS12165 PF00381 PTS HPr component phosphorylation site BEN53_RS12165 PF03610 PTS system fructose IIA component BEN53_RS12165 PF05524 PEP-utilising enzyme, N-terminal BEN53_RS12165 PF00391 PEP-utilising enzyme, mobile domain BEN53_RS12175 PF01204 Trehalase BEN53_RS12185 PF01497 Periplasmic binding protein BEN53_RS12190 PF01032 FecCD transport family BEN53_RS12195 PF00005 ABC transporter BEN53_RS12200 PF13649 Methyltransferase domain BEN53_RS12205 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BEN53_RS12205 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BEN53_RS12215 PF04226 Transglycosylase associated protein BEN53_RS12220 PF07317 Flagellar regulator YcgR BEN53_RS12220 PF07238 PilZ domain BEN53_RS12225 PF01464 Transglycosylase SLT domain BEN53_RS12235 PF17676 LD-carboxypeptidase C-terminal domain BEN53_RS12235 PF02016 LD-carboxypeptidase N-terminal domain BEN53_RS12240 PF02080 TrkA-C domain BEN53_RS12240 PF00999 Sodium/hydrogen exchanger family BEN53_RS12240 PF03471 Transporter associated domain BEN53_RS12250 PF01168 Alanine racemase, N-terminal domain BEN53_RS12250 PF00842 Alanine racemase, C-terminal domain BEN53_RS12255 PF01266 FAD dependent oxidoreductase BEN53_RS12260 PF04293 SpoVR like protein BEN53_RS12265 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS12265 PF07840 FadR C-terminal domain BEN53_RS12270 PF06450 Bacterial Na+/H+ antiporter B (NhaB) BEN53_RS12275 PF02600 Disulfide bond formation protein DsbB BEN53_RS12280 PF13438 Domain of unknown function (DUF4113) BEN53_RS12280 PF00817 impB/mucB/samB family BEN53_RS12280 PF11799 impB/mucB/samB family C-terminal domain BEN53_RS12280 PF11798 IMS family HHH motif BEN53_RS12285 PF00717 Peptidase S24-like BEN53_RS12290 PF06109 Haemolysin E (HlyE) BEN53_RS12295 PF03692 Putative zinc- or iron-chelating domain BEN53_RS12300 PF01557 Fumarylacetoacetate (FAA) hydrolase family BEN53_RS12305 PF05166 YcgL domain BEN53_RS12315 PF04151 Bacterial pre-peptidase C-terminal domain BEN53_RS12320 PF05666 Fels-1 Prophage Protein-like BEN53_RS12330 PF03775 Septum formation inhibitor MinC, C-terminal domain BEN53_RS12330 PF05209 Septum formation inhibitor MinC, N-terminal domain BEN53_RS12335 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BEN53_RS12340 PF03776 Septum formation topological specificity factor MinE BEN53_RS12355 PF03797 Autotransporter beta-domain BEN53_RS12370 PF13436 Glycine-zipper domain BEN53_RS12375 PF16456 YmgD protein BEN53_RS12380 PF03797 Autotransporter beta-domain BEN53_RS12395 PF12792 CSS motif domain associated with EAL BEN53_RS12395 PF00563 EAL domain BEN53_RS12405 PF10798 Biofilm development protein YmgB/AriR BEN53_RS12415 PF10798 Biofilm development protein YmgB/AriR BEN53_RS12420 PF00563 EAL domain BEN53_RS12420 PF04940 Sensors of blue-light using FAD BEN53_RS12425 PF13411 MerR HTH family regulatory protein BEN53_RS12430 PF07166 Protein of unknown function (DUF1398) BEN53_RS12440 PF00180 Isocitrate/isopropylmalate dehydrogenase BEN53_RS12445 PF00849 RNA pseudouridylate synthase BEN53_RS12450 PF00293 NUDIX domain BEN53_RS12460 PF04356 Protein of unknown function (DUF489) BEN53_RS12465 PF08328 Adenylosuccinate lyase C-terminal BEN53_RS12465 PF00206 Lyase BEN53_RS12470 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS12470 PF00072 Response regulator receiver domain BEN53_RS12475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS12475 PF08918 PhoQ Sensor BEN53_RS12480 PF08007 Cupin superfamily protein BEN53_RS12485 PF07687 Peptidase dimerisation domain BEN53_RS12485 PF01546 Peptidase family M20/M25/M40 BEN53_RS12495 PF08402 TOBE domain BEN53_RS12495 PF00005 ABC transporter BEN53_RS12500 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS12505 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS12510 PF13416 Bacterial extracellular solute-binding protein BEN53_RS12515 PF12158 Protein of unknown function (DUF3592) BEN53_RS12520 PF04536 TPM domain BEN53_RS12525 PF02146 Sir2 family BEN53_RS12530 PF00480 ROK family BEN53_RS12535 PF12704 MacB-like periplasmic core domain BEN53_RS12535 PF02687 FtsX-like permease family BEN53_RS12540 PF00005 ABC transporter BEN53_RS12545 PF12704 MacB-like periplasmic core domain BEN53_RS12545 PF02687 FtsX-like permease family BEN53_RS12550 PF01757 Acyltransferase family BEN53_RS12555 PF02559 CarD-like/TRCF domain BEN53_RS12555 PF00271 Helicase conserved C-terminal domain BEN53_RS12555 PF03461 TRCF domain BEN53_RS12555 PF17757 UvrB interaction domain BEN53_RS12555 PF00270 DEAD/DEAH box helicase BEN53_RS12560 PF03734 L,D-transpeptidase catalytic domain BEN53_RS12560 PF17969 L,D-transpeptidase C-terminal domain BEN53_RS12560 PF01476 LysM domain BEN53_RS12565 PF07338 Protein of unknown function (DUF1471) BEN53_RS12570 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS12575 PF05433 Glycine zipper 2TM domain BEN53_RS12585 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS12590 PF05728 Uncharacterised protein family (UPF0227) BEN53_RS12595 PF00933 Glycosyl hydrolase family 3 N terminal domain BEN53_RS12600 PF01636 Phosphotransferase enzyme family BEN53_RS12605 PF13036 Peptidoglycan-synthase activator LpoB BEN53_RS12610 PF07233 Protein of unknown function (DUF1425) BEN53_RS12615 PF01230 HIT domain BEN53_RS12620 PF00593 TonB dependent receptor BEN53_RS12620 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS12625 PF02378 Phosphotransferase system, EIIC BEN53_RS12625 PF00367 phosphotransferase system, EIIB BEN53_RS12630 PF01026 TatD related DNase BEN53_RS12635 PF09115 DNA polymerase III, delta subunit, C terminal BEN53_RS12640 PF02223 Thymidylate kinase BEN53_RS12645 PF02618 YceG-like family BEN53_RS12650 PF01063 Amino-transferase class IV BEN53_RS12655 PF00109 Beta-ketoacyl synthase, N-terminal domain BEN53_RS12655 PF02801 Beta-ketoacyl synthase, C-terminal domain BEN53_RS12660 PF00550 Phosphopantetheine attachment site BEN53_RS12670 PF00698 Acyl transferase domain BEN53_RS12675 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BEN53_RS12675 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BEN53_RS12680 PF02504 Fatty acid synthesis protein BEN53_RS12685 PF01783 Ribosomal L32p protein family BEN53_RS12690 PF02620 Large ribosomal RNA subunit accumulation protein YceD BEN53_RS12695 PF02545 Maf-like protein BEN53_RS12700 PF00849 RNA pseudouridylate synthase BEN53_RS12700 PF01479 S4 domain BEN53_RS12710 PF12111 Polyribonucleotide phosphorylase C terminal BEN53_RS12710 PF10150 Ribonuclease E/G family BEN53_RS12710 PF00575 S1 RNA binding domain BEN53_RS12725 PF00669 Bacterial flagellin N-terminal helical region BEN53_RS12730 PF00460 Flagella basal body rod protein BEN53_RS12730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN53_RS12735 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BEN53_RS12735 PF10135 Rod binding protein BEN53_RS12740 PF02119 Flagellar P-ring protein BEN53_RS12745 PF02107 Flagellar L-ring protein BEN53_RS12750 PF00460 Flagella basal body rod protein BEN53_RS12750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN53_RS12755 PF00460 Flagella basal body rod protein BEN53_RS12755 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN53_RS12760 PF07559 Flagellar basal body protein FlaE BEN53_RS12760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN53_RS12760 PF00460 Flagella basal body rod protein BEN53_RS12765 PF13861 FlgD Tudor-like domain BEN53_RS12765 PF03963 Flagellar hook capping protein - N-terminal region BEN53_RS12765 PF13860 FlgD Ig-like domain BEN53_RS12770 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BEN53_RS12770 PF00460 Flagella basal body rod protein BEN53_RS12775 PF00460 Flagella basal body rod protein BEN53_RS12780 PF13144 Chaperone for flagella basal body P-ring formation BEN53_RS12785 PF04316 Anti-sigma-28 factor, FlgM BEN53_RS12790 PF05130 FlgN protein BEN53_RS12795 PF03023 Lipid II flippase MurJ BEN53_RS12800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEN53_RS12805 PF04337 Protein of unknown function, DUF480 BEN53_RS12810 PF13302 Acetyltransferase (GNAT) domain BEN53_RS12815 PF07690 Major Facilitator Superfamily BEN53_RS12820 PF13417 Glutathione S-transferase, N-terminal domain BEN53_RS12820 PF04399 Glutaredoxin 2, C terminal domain BEN53_RS12825 PF07273 Protein of unknown function (DUF1439) BEN53_RS12830 PF01979 Amidohydrolase family BEN53_RS12835 PF06183 DinI-like family BEN53_RS12845 PF13991 BssS protein family BEN53_RS12850 PF01266 FAD dependent oxidoreductase BEN53_RS12855 PF10968 Protein of unknown function (DUF2770) BEN53_RS12860 PF01292 Prokaryotic cytochrome b561 BEN53_RS12865 PF04264 YceI-like domain BEN53_RS12870 PF00581 Rhodanese-like domain BEN53_RS12870 PF17773 UPF0176 acylphosphatase like domain BEN53_RS12870 PF12368 Rhodanase C-terminal BEN53_RS12875 PF03279 Bacterial lipid A biosynthesis acyltransferase BEN53_RS12880 PF07690 Major Facilitator Superfamily BEN53_RS12885 PF13984 MsyB protein BEN53_RS12890 PF07119 Protein of unknown function (DUF1375) BEN53_RS12895 PF00535 Glycosyl transferase family 2 BEN53_RS12900 PF04349 Periplasmic glucan biosynthesis protein, MdoG BEN53_RS12915 PF01757 Acyltransferase family BEN53_RS12920 PF13091 PLD-like domain BEN53_RS12925 PF01661 Macro domain BEN53_RS12935 PF10610 Thin aggregative fimbriae synthesis protein BEN53_RS12940 PF07012 Curlin associated repeat BEN53_RS12945 PF07012 Curlin associated repeat BEN53_RS12955 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS12960 PF10627 Curli assembly protein CsgE BEN53_RS12965 PF10614 Type VIII secretion system (T8SS), CsgF protein BEN53_RS12970 PF03783 Curli production assembly/transport component CsgG BEN53_RS12975 PF06496 Protein of unknown function (DUF1097) BEN53_RS12980 PF02613 Nitrate reductase delta subunit BEN53_RS12985 PF02811 PHP domain BEN53_RS12990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN53_RS13000 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS13000 PF17158 Membrane-associated sensor, integral membrane domain BEN53_RS13010 PF01522 Polysaccharide deacetylase BEN53_RS13010 PF14883 Hypothetical glycosyl hydrolase family 13 BEN53_RS13015 PF00535 Glycosyl transferase family 2 BEN53_RS13020 PF13994 PgaD-like protein BEN53_RS13025 PF02562 PhoH-like protein BEN53_RS13035 PF04261 Dyp-type peroxidase family BEN53_RS13040 PF13473 Cupredoxin-like domain BEN53_RS13040 PF09375 Imelysin BEN53_RS13045 PF03239 Iron permease FTR1 family BEN53_RS13060 PF00474 Sodium:solute symporter family BEN53_RS13075 PF01619 Proline dehydrogenase BEN53_RS13075 PF14850 DNA-binding domain of Proline dehydrogenase BEN53_RS13075 PF00171 Aldehyde dehydrogenase family BEN53_RS13075 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BEN53_RS13080 PF08362 YcdC-like protein, C-terminal region BEN53_RS13080 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS13085 PF00296 Luciferase-like monooxygenase BEN53_RS13090 PF00857 Isochorismatase family BEN53_RS13095 PF01042 Endoribonuclease L-PSP BEN53_RS13100 PF00561 alpha/beta hydrolase fold BEN53_RS13105 PF00881 Nitroreductase family BEN53_RS13110 PF01613 Flavin reductase like domain BEN53_RS13115 PF00860 Permease family BEN53_RS13120 PF10685 Stress-induced bacterial acidophilic repeat motif BEN53_RS13130 PF03358 NADPH-dependent FMN reductase BEN53_RS13135 PF13993 YccJ-like protein BEN53_RS13140 PF00328 Histidine phosphatase superfamily (branch 2) BEN53_RS13150 PF01556 DnaJ C terminal domain BEN53_RS13150 PF00226 DnaJ domain BEN53_RS13160 PF02613 Nitrate reductase delta subunit BEN53_RS13165 PF00384 Molybdopterin oxidoreductase BEN53_RS13165 PF18364 Molybdopterin oxidoreductase N-terminal domain BEN53_RS13165 PF01568 Molydopterin dinucleotide binding domain BEN53_RS13170 PF03264 NapC/NirT cytochrome c family, N-terminal region BEN53_RS13175 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS13175 PF00072 Response regulator receiver domain BEN53_RS13180 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BEN53_RS13185 PF00072 Response regulator receiver domain BEN53_RS13185 PF00672 HAMP domain BEN53_RS13185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS13185 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS13185 PF01627 Hpt domain BEN53_RS13190 PF12801 4Fe-4S binding domain BEN53_RS13195 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system BEN53_RS13200 PF15939 Putative antitoxin of bacterial toxin-antitoxin system BEN53_RS13210 PF00313 'Cold-shock' DNA-binding domain BEN53_RS13215 PF00313 'Cold-shock' DNA-binding domain BEN53_RS13220 PF00328 Histidine phosphatase superfamily (branch 2) BEN53_RS13225 PF08173 Membrane bound YbgT-like protein BEN53_RS13230 PF02322 Cytochrome bd terminal oxidase subunit II BEN53_RS13235 PF01654 Cytochrome bd terminal oxidase subunit I BEN53_RS13240 PF04809 HupH hydrogenase expression protein, C-terminal conserved region BEN53_RS13245 PF07449 Hydrogenase-1 expression protein HyaE BEN53_RS13250 PF01750 Hydrogenase maturation protease BEN53_RS13255 PF01292 Prokaryotic cytochrome b561 BEN53_RS13260 PF00374 Nickel-dependent hydrogenase BEN53_RS13265 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal BEN53_RS13265 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BEN53_RS13280 PF01027 Inhibitor of apoptosis-promoting Bax1 BEN53_RS13285 PF04358 DsrC like protein BEN53_RS13290 PF00708 Acylphosphatase BEN53_RS13295 PF10672 S-adenosylmethionine-dependent methyltransferase BEN53_RS13295 PF17785 PUA-like domain BEN53_RS13300 PF08755 Hemimethylated DNA-binding protein YccV like BEN53_RS13305 PF13380 CoA binding domain BEN53_RS13310 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BEN53_RS13315 PF02142 MGS-like domain BEN53_RS13320 PF13361 UvrD-like helicase C-terminal domain BEN53_RS13320 PF00580 UvrD/REP helicase N-terminal domain BEN53_RS13320 PF12462 DNA helicase IV / RNA helicase N terminal BEN53_RS13325 PF03733 Inner membrane component domain BEN53_RS13330 PF12805 FUSC-like inner membrane protein yccS BEN53_RS13335 PF04994 TfoX C-terminal domain BEN53_RS13335 PF04993 TfoX N-terminal domain BEN53_RS13340 PF03846 Cell division inhibitor SulA BEN53_RS13350 PF01389 OmpA-like transmembrane domain BEN53_RS13350 PF00691 OmpA family BEN53_RS13355 PF17414 MatP C-terminal ribbon-helix-helix domain BEN53_RS13355 PF06303 MatP N-terminal domain BEN53_RS13360 PF13654 AAA domain BEN53_RS13360 PF05362 Lon protease (S16) C-terminal proteolytic domain BEN53_RS13365 PF07977 FabA-like domain BEN53_RS13370 PF04957 Ribosome modulation factor BEN53_RS13375 PF03886 ABC-type transport auxiliary lipoprotein component BEN53_RS13380 PF02470 MlaD protein BEN53_RS13385 PF04403 Paraquat-inducible protein A BEN53_RS13390 PF00005 ABC transporter BEN53_RS13390 PF12848 ABC transporter BEN53_RS13390 PF16326 ABC transporter C-terminal domain BEN53_RS13395 PF01170 Putative RNA methylase family UPF0020 BEN53_RS13395 PF02926 THUMP domain BEN53_RS13395 PF10672 S-adenosylmethionine-dependent methyltransferase BEN53_RS13400 PF03473 MOSC domain BEN53_RS13400 PF00111 2Fe-2S iron-sulfur cluster binding domain BEN53_RS13400 PF03476 MOSC N-terminal beta barrel domain BEN53_RS13405 PF07126 Cell-division protein ZapC BEN53_RS13410 PF01180 Dihydroorotate dehydrogenase BEN53_RS13415 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS13415 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS13420 PF00419 Fimbrial protein BEN53_RS13425 PF00419 Fimbrial protein BEN53_RS13430 PF00419 Fimbrial protein BEN53_RS13435 PF00577 Outer membrane usher protein BEN53_RS13435 PF13954 PapC N-terminal domain BEN53_RS13435 PF13953 PapC C-terminal domain BEN53_RS13440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS13440 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS13445 PF00419 Fimbrial protein BEN53_RS13455 PF03358 NADPH-dependent FMN reductase BEN53_RS13460 PF09084 NMT1/THI5 like BEN53_RS13465 PF00296 Luciferase-like monooxygenase BEN53_RS13470 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS13475 PF00005 ABC transporter BEN53_RS13480 PF11940 Domain of unknown function (DUF3458) Ig-like fold BEN53_RS13480 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BEN53_RS13480 PF01433 Peptidase family M1 domain BEN53_RS13485 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BEN53_RS13485 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BEN53_RS13490 PF01336 OB-fold nucleic acid binding domain BEN53_RS13490 PF00152 tRNA synthetases class II (D, K and N) BEN53_RS13495 PF00267 Gram-negative porin BEN53_RS13505 PF00155 Aminotransferase class I and II BEN53_RS13510 PF00753 Metallo-beta-lactamase superfamily BEN53_RS13515 PF05951 Bacterial protein of unknown function (DUF882) BEN53_RS13525 PF03734 L,D-transpeptidase catalytic domain BEN53_RS13525 PF01471 Putative peptidoglycan binding domain BEN53_RS13530 PF04310 MukB N-terminal BEN53_RS13530 PF16330 MukB hinge domain BEN53_RS13535 PF04288 MukE-like family BEN53_RS13540 PF17193 MukF C-terminal domain BEN53_RS13540 PF17192 MukF middle domain BEN53_RS13540 PF03882 MukF winged-helix domain BEN53_RS13545 PF13847 Methyltransferase domain BEN53_RS13550 PF02698 DUF218 domain BEN53_RS13555 PF01636 Phosphotransferase enzyme family BEN53_RS13560 PF02348 Cytidylyltransferase BEN53_RS13565 PF03966 Trm112p-like protein BEN53_RS13570 PF06224 Winged helix DNA-binding domain BEN53_RS13575 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BEN53_RS13580 PF00005 ABC transporter BEN53_RS13580 PF00664 ABC transporter transmembrane region BEN53_RS13585 PF03772 Competence protein BEN53_RS13585 PF00753 Metallo-beta-lactamase superfamily BEN53_RS13590 PF00216 Bacterial DNA-binding protein BEN53_RS13595 PF00575 S1 RNA binding domain BEN53_RS13600 PF02224 Cytidylate kinase BEN53_RS13605 PF01435 Peptidase family M48 BEN53_RS13610 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BEN53_RS13615 PF00266 Aminotransferase class-V BEN53_RS13620 PF04239 Protein of unknown function (DUF421) BEN53_RS13625 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding BEN53_RS13625 PF18381 YcaO cyclodehydratase C-terminal domain BEN53_RS13630 PF01226 Formate/nitrite transporter BEN53_RS13635 PF01228 Glycine radical BEN53_RS13635 PF02901 Pyruvate formate lyase-like BEN53_RS13640 PF04055 Radical SAM superfamily BEN53_RS13645 PF02525 Flavodoxin-like fold BEN53_RS13650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS13650 PF03466 LysR substrate binding domain BEN53_RS13655 PF13520 Amino acid permease BEN53_RS13660 PF07690 Major Facilitator Superfamily BEN53_RS13665 PF00857 Isochorismatase family BEN53_RS13670 PF04976 DMSO reductase anchor subunit (DmsC) BEN53_RS13675 PF13247 4Fe-4S dicluster domain BEN53_RS13675 PF12800 4Fe-4S binding domain BEN53_RS13680 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BEN53_RS13680 PF01568 Molydopterin dinucleotide binding domain BEN53_RS13680 PF00384 Molybdopterin oxidoreductase BEN53_RS13685 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BEN53_RS13685 PF02403 Seryl-tRNA synthetase N-terminal domain BEN53_RS13690 PF00004 ATPase family associated with various cellular activities (AAA) BEN53_RS13690 PF16193 AAA C-terminal domain BEN53_RS13690 PF12002 MgsA AAA+ ATPase C terminal BEN53_RS13695 PF03548 Outer membrane lipoprotein carrier protein LolA BEN53_RS13700 PF09397 Ftsk gamma domain BEN53_RS13700 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BEN53_RS13700 PF17854 FtsK alpha domain BEN53_RS13700 PF01580 FtsK/SpoIIIE family BEN53_RS13705 PF01037 Lrp/AsnC ligand binding domain BEN53_RS13715 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS13720 PF00005 ABC transporter BEN53_RS13720 PF00664 ABC transporter transmembrane region BEN53_RS13725 PF00005 ABC transporter BEN53_RS13725 PF00664 ABC transporter transmembrane region BEN53_RS13730 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BEN53_RS13735 PF01176 Translation initiation factor 1A / IF-1 BEN53_RS13745 PF00004 ATPase family associated with various cellular activities (AAA) BEN53_RS13745 PF07724 AAA domain (Cdc48 subfamily) BEN53_RS13745 PF10431 C-terminal, D2-small domain, of ClpB protein BEN53_RS13745 PF02861 Clp amino terminal domain, pathogenicity island component BEN53_RS13745 PF17871 AAA lid domain BEN53_RS13750 PF02617 ATP-dependent Clp protease adaptor protein ClpS BEN53_RS13755 PF00313 'Cold-shock' DNA-binding domain BEN53_RS13760 PF12704 MacB-like periplasmic core domain BEN53_RS13760 PF02687 FtsX-like permease family BEN53_RS13760 PF00005 ABC transporter BEN53_RS13765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS13770 PF04393 Protein of unknown function (DUF535) BEN53_RS13775 PF11398 Protein of unknown function (DUF2813) BEN53_RS13780 PF00230 Major intrinsic protein BEN53_RS13790 PF01548 Transposase BEN53_RS13790 PF02371 Transposase IS116/IS110/IS902 family BEN53_RS13795 PF01207 Dihydrouridine synthase (Dus) BEN53_RS13800 PF03788 LrgA family BEN53_RS13805 PF04172 LrgB-like family BEN53_RS13810 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BEN53_RS13810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BEN53_RS13815 PF02698 DUF218 domain BEN53_RS13820 PF10808 Protein of unknown function (DUF2542) BEN53_RS13825 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS13825 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BEN53_RS13830 PF01180 Dihydroorotate dehydrogenase BEN53_RS13835 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS13840 PF00005 ABC transporter BEN53_RS13845 PF13407 Periplasmic binding protein domain BEN53_RS13850 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS13860 PF04235 Protein of unknown function (DUF418) BEN53_RS13865 PF01227 GTP cyclohydrolase I BEN53_RS13880 PF00756 Putative esterase BEN53_RS13890 PF03315 Serine dehydratase beta chain BEN53_RS13890 PF03313 Serine dehydratase alpha chain BEN53_RS13895 PF18429 Domain of unknown function (DUF5609) BEN53_RS13900 PF07690 Major Facilitator Superfamily BEN53_RS13905 PF00593 TonB dependent receptor BEN53_RS13905 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS13915 PF00324 Amino acid permease BEN53_RS13925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS13925 PF03466 LysR substrate binding domain BEN53_RS13930 PF03601 Conserved hypothetical protein 698 BEN53_RS13935 PF01261 Xylose isomerase-like TIM barrel BEN53_RS13940 PF00294 pfkB family carbohydrate kinase BEN53_RS13945 PF01773 Na+ dependent nucleoside transporter N-terminus BEN53_RS13945 PF07662 Na+ dependent nucleoside transporter C-terminus BEN53_RS13950 PF01156 Inosine-uridine preferring nucleoside hydrolase BEN53_RS13955 PF00027 Cyclic nucleotide-binding domain BEN53_RS13960 PF01773 Na+ dependent nucleoside transporter N-terminus BEN53_RS13960 PF07662 Na+ dependent nucleoside transporter C-terminus BEN53_RS13965 PF04227 Indigoidine synthase A like protein BEN53_RS13970 PF00294 pfkB family carbohydrate kinase BEN53_RS13975 PF02378 Phosphotransferase system, EIIC BEN53_RS13975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS13980 PF00294 pfkB family carbohydrate kinase BEN53_RS13985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS13985 PF00381 PTS HPr component phosphorylation site BEN53_RS13990 PF07690 Major Facilitator Superfamily BEN53_RS13995 PF03692 Putative zinc- or iron-chelating domain BEN53_RS14000 PF09285 Elongation factor P, C-terminal BEN53_RS14000 PF01132 Elongation factor P (EF-P) OB domain BEN53_RS14000 PF08207 Elongation factor P (EF-P) KOW-like domain BEN53_RS14005 PF08125 Mannitol dehydrogenase C-terminal domain BEN53_RS14005 PF01232 Mannitol dehydrogenase Rossmann domain BEN53_RS14010 PF02492 CobW/HypB/UreG, nucleotide-binding domain BEN53_RS14010 PF07683 Cobalamin synthesis protein cobW C-terminal domain BEN53_RS14015 PF01569 PAP2 superfamily BEN53_RS14020 PF00877 NlpC/P60 family BEN53_RS14025 PF00563 EAL domain BEN53_RS14025 PF12792 CSS motif domain associated with EAL BEN53_RS14030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS14035 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS14040 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN53_RS14040 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS14045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN53_RS14045 PF00005 ABC transporter BEN53_RS14050 PF13989 YejG-like protein BEN53_RS14060 PF07690 Major Facilitator Superfamily BEN53_RS14065 PF00849 RNA pseudouridylate synthase BEN53_RS14065 PF01479 S4 domain BEN53_RS14075 PF00271 Helicase conserved C-terminal domain BEN53_RS14075 PF04851 Type III restriction enzyme, res subunit BEN53_RS14080 PF01386 Ribosomal L25p family BEN53_RS14085 PF04245 37-kD nucleoid-associated bacterial protein BEN53_RS14090 PF07208 Protein of unknown function (DUF1414) BEN53_RS14095 PF11893 Domain of unknown function (DUF3413) BEN53_RS14095 PF00884 Sulfatase BEN53_RS14105 PF03212 Pertactin BEN53_RS14105 PF16168 Adhesin of bacterial autotransporter system, probable stalk BEN53_RS14105 PF03797 Autotransporter beta-domain BEN53_RS14115 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS14115 PF00072 Response regulator receiver domain BEN53_RS14120 PF03918 Cytochrome C biogenesis protein BEN53_RS14125 PF08534 Redoxin BEN53_RS14130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BEN53_RS14130 PF01578 Cytochrome C assembly protein BEN53_RS14135 PF03100 CcmE BEN53_RS14140 PF04995 Heme exporter protein D (CcmD) BEN53_RS14145 PF01578 Cytochrome C assembly protein BEN53_RS14150 PF03379 CcmB protein BEN53_RS14155 PF00005 ABC transporter BEN53_RS14160 PF03264 NapC/NirT cytochrome c family, N-terminal region BEN53_RS14165 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BEN53_RS14170 PF12801 4Fe-4S binding domain BEN53_RS14170 PF13237 4Fe-4S dicluster domain BEN53_RS14175 PF12800 4Fe-4S binding domain BEN53_RS14175 PF12838 4Fe-4S dicluster domain BEN53_RS14180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BEN53_RS14180 PF01568 Molydopterin dinucleotide binding domain BEN53_RS14180 PF00384 Molybdopterin oxidoreductase BEN53_RS14185 PF03927 NapD protein BEN53_RS14190 PF00037 4Fe-4S binding domain BEN53_RS14190 PF12800 4Fe-4S binding domain BEN53_RS14190 PF13187 4Fe-4S dicluster domain BEN53_RS14200 PF03974 Ecotin BEN53_RS14205 PF06039 Malate:quinone oxidoreductase (Mqo) BEN53_RS14210 PF00005 ABC transporter BEN53_RS14215 PF13532 2OG-Fe(II) oxygenase superfamily BEN53_RS14220 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BEN53_RS14220 PF12833 Helix-turn-helix domain BEN53_RS14220 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BEN53_RS14220 PF02805 Metal binding domain of Ada BEN53_RS14225 PF02424 ApbE family BEN53_RS14230 PF00267 Gram-negative porin BEN53_RS14245 PF01627 Hpt domain BEN53_RS14245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS14245 PF16359 RcsD-ABL domain BEN53_RS14250 PF00072 Response regulator receiver domain BEN53_RS14250 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS14255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS14255 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS14255 PF09456 RcsC Alpha-Beta-Loop (ABL) BEN53_RS14255 PF00072 Response regulator receiver domain BEN53_RS14260 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS14260 PF00989 PAS fold BEN53_RS14260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS14265 PF00158 Sigma-54 interaction domain BEN53_RS14265 PF00072 Response regulator receiver domain BEN53_RS14265 PF02954 Bacterial regulatory protein, Fis family BEN53_RS14270 PF01144 Coenzyme A transferase BEN53_RS14275 PF01144 Coenzyme A transferase BEN53_RS14280 PF02667 Short chain fatty acid transporter BEN53_RS14285 PF02803 Thiolase, C-terminal domain BEN53_RS14285 PF00108 Thiolase, N-terminal domain BEN53_RS14290 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) BEN53_RS14295 PF08486 Stage II sporulation protein BEN53_RS14295 PF10062 Predicted secreted protein (DUF2300) BEN53_RS14300 PF01835 MG2 domain BEN53_RS14300 PF00207 Alpha-2-macroglobulin family BEN53_RS14300 PF07703 Alpha-2-macroglobulin bait region domain BEN53_RS14305 PF06672 Protein of unknown function (DUF1175) BEN53_RS14310 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) BEN53_RS14315 PF00521 DNA gyrase/topoisomerase IV, subunit A BEN53_RS14315 PF03989 DNA gyrase C-terminal domain, beta-propeller BEN53_RS14320 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN53_RS14320 PF13378 Enolase C-terminal domain-like BEN53_RS14325 PF07690 Major Facilitator Superfamily BEN53_RS14330 PF07729 FCD domain BEN53_RS14330 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS14340 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat BEN53_RS14340 PF12951 Passenger-associated-transport-repeat BEN53_RS14340 PF03797 Autotransporter beta-domain BEN53_RS14350 PF02867 Ribonucleotide reductase, barrel domain BEN53_RS14350 PF03477 ATP cone domain BEN53_RS14350 PF00317 Ribonucleotide reductase, all-alpha domain BEN53_RS14355 PF00268 Ribonucleotide reductase, small chain BEN53_RS14360 PF00111 2Fe-2S iron-sulfur cluster binding domain BEN53_RS14370 PF07690 Major Facilitator Superfamily BEN53_RS14375 PF03466 LysR substrate binding domain BEN53_RS14375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS14380 PF03009 Glycerophosphoryl diester phosphodiesterase family BEN53_RS14385 PF07690 Major Facilitator Superfamily BEN53_RS14390 PF01266 FAD dependent oxidoreductase BEN53_RS14390 PF04324 BFD-like [2Fe-2S] binding domain BEN53_RS14395 PF00890 FAD binding domain BEN53_RS14400 PF13183 4Fe-4S dicluster domain BEN53_RS14400 PF02754 Cysteine-rich domain BEN53_RS14405 PF04754 Putative transposase, YhgA-like BEN53_RS14415 PF03328 HpcH/HpaI aldolase/citrate lyase family BEN53_RS14420 PF07690 Major Facilitator Superfamily BEN53_RS14425 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN53_RS14425 PF13378 Enolase C-terminal domain-like BEN53_RS14430 PF01614 Bacterial transcriptional regulator BEN53_RS14430 PF09339 IclR helix-turn-helix domain BEN53_RS14435 PF00994 Probable molybdopterin binding domain BEN53_RS14440 PF07437 YfaZ precursor BEN53_RS14445 PF00293 NUDIX domain BEN53_RS14450 PF00300 Histidine phosphatase superfamily (branch 1) BEN53_RS14455 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BEN53_RS14460 PF00535 Glycosyl transferase family 2 BEN53_RS14465 PF00551 Formyl transferase BEN53_RS14465 PF02911 Formyl transferase, C-terminal domain BEN53_RS14465 PF01370 NAD dependent epimerase/dehydratase family BEN53_RS14470 PF01522 Polysaccharide deacetylase BEN53_RS14475 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BEN53_RS14480 PF00892 EamA-like transporter family BEN53_RS14495 PF13193 AMP-binding enzyme C-terminal domain BEN53_RS14495 PF00501 AMP-binding enzyme BEN53_RS14500 PF13378 Enolase C-terminal domain-like BEN53_RS14505 PF00378 Enoyl-CoA hydratase/isomerase BEN53_RS14510 PF12697 Alpha/beta hydrolase family BEN53_RS14515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN53_RS14515 PF16582 Middle domain of thiamine pyrophosphate BEN53_RS14515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN53_RS14520 PF00425 chorismate binding enzyme BEN53_RS14525 PF05957 Bacterial protein of unknown function (DUF883) BEN53_RS14530 PF13673 Acetyltransferase (GNAT) domain BEN53_RS14535 PF12706 Beta-lactamase superfamily domain BEN53_RS14550 PF08974 Domain of unknown function (DUF1877) BEN53_RS14555 PF00361 Proton-conducting membrane transporter BEN53_RS14560 PF00361 Proton-conducting membrane transporter BEN53_RS14565 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BEN53_RS14565 PF00361 Proton-conducting membrane transporter BEN53_RS14570 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BEN53_RS14575 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BEN53_RS14580 PF12838 4Fe-4S dicluster domain BEN53_RS14585 PF00146 NADH dehydrogenase BEN53_RS14590 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BEN53_RS14590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BEN53_RS14590 PF00384 Molybdopterin oxidoreductase BEN53_RS14590 PF01568 Molydopterin dinucleotide binding domain BEN53_RS14595 PF10531 SLBB domain BEN53_RS14595 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BEN53_RS14595 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BEN53_RS14605 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BEN53_RS14605 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BEN53_RS14610 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BEN53_RS14615 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BEN53_RS14620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS14620 PF03466 LysR substrate binding domain BEN53_RS14630 PF00155 Aminotransferase class I and II BEN53_RS14640 PF03600 Citrate transporter BEN53_RS14640 PF02080 TrkA-C domain BEN53_RS14645 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS14650 PF03887 YfbU domain BEN53_RS14655 PF04217 Protein of unknown function, DUF412 BEN53_RS14660 PF00871 Acetokinase family BEN53_RS14665 PF01515 Phosphate acetyl/butaryl transferase BEN53_RS14665 PF07085 DRTGG domain BEN53_RS14670 PF03606 C4-dicarboxylate anaerobic carrier BEN53_RS14675 PF00293 NUDIX domain BEN53_RS14680 PF12850 Calcineurin-like phosphoesterase superfamily domain BEN53_RS14685 PF14834 Glutathione S-transferase, C-terminal domain BEN53_RS14685 PF02798 Glutathione S-transferase, N-terminal domain BEN53_RS14690 PF00043 Glutathione S-transferase, C-terminal domain BEN53_RS14690 PF02798 Glutathione S-transferase, N-terminal domain BEN53_RS14695 PF02152 Dihydroneopterin aldolase BEN53_RS14700 PF01370 NAD dependent epimerase/dehydratase family BEN53_RS14700 PF08338 Domain of unknown function (DUF1731) BEN53_RS14705 PF03553 Na+/H+ antiporter family BEN53_RS14710 PF01053 Cys/Met metabolism PLP-dependent enzyme BEN53_RS14715 PF04754 Putative transposase, YhgA-like BEN53_RS14720 PF00005 ABC transporter BEN53_RS14725 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS14730 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS14735 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS14740 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS14745 PF02441 Flavoprotein BEN53_RS14750 PF00156 Phosphoribosyl transferase domain BEN53_RS14755 PF02674 Colicin V production protein BEN53_RS14765 PF02371 Transposase IS116/IS110/IS902 family BEN53_RS14765 PF01548 Transposase BEN53_RS14775 PF05036 Sporulation related domain BEN53_RS14780 PF02875 Mur ligase family, glutamate ligase domain BEN53_RS14780 PF08245 Mur ligase middle domain BEN53_RS14785 PF01039 Carboxyl transferase domain BEN53_RS14785 PF17848 Acetyl-coA carboxylase zinc finger domain BEN53_RS14790 PF09335 SNARE associated Golgi protein BEN53_RS14795 PF01416 tRNA pseudouridine synthase BEN53_RS14800 PF02774 Semialdehyde dehydrogenase, dimerisation domain BEN53_RS14800 PF01118 Semialdehyde dehydrogenase, NAD binding domain BEN53_RS14805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN53_RS14805 PF11890 Domain of unknown function (DUF3410) BEN53_RS14805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEN53_RS14815 PF07690 Major Facilitator Superfamily BEN53_RS14825 PF00109 Beta-ketoacyl synthase, N-terminal domain BEN53_RS14825 PF02801 Beta-ketoacyl synthase, C-terminal domain BEN53_RS14830 PF01266 FAD dependent oxidoreductase BEN53_RS14830 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BEN53_RS14835 PF08891 YfcL protein BEN53_RS14840 PF04315 Elongation factor P hydroxylase BEN53_RS14845 PF01925 Sulfite exporter TauE/SafE BEN53_RS14850 PF03411 Penicillin-insensitive murein endopeptidase BEN53_RS14855 PF01264 Chorismate synthase BEN53_RS14860 PF05175 Methyltransferase small domain BEN53_RS14865 PF01713 Smr domain BEN53_RS14880 PF11245 Protein of unknown function (DUF2544) BEN53_RS14885 PF00419 Fimbrial protein BEN53_RS14890 PF00419 Fimbrial protein BEN53_RS14895 PF00419 Fimbrial protein BEN53_RS14900 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS14900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS14905 PF00577 Outer membrane usher protein BEN53_RS14905 PF13954 PapC N-terminal domain BEN53_RS14905 PF13953 PapC C-terminal domain BEN53_RS14910 PF00419 Fimbrial protein BEN53_RS14915 PF00300 Histidine phosphatase superfamily (branch 1) BEN53_RS14920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BEN53_RS14920 PF00378 Enoyl-CoA hydratase/isomerase BEN53_RS14920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BEN53_RS14925 PF00108 Thiolase, N-terminal domain BEN53_RS14925 PF02803 Thiolase, C-terminal domain BEN53_RS14930 PF04175 Protein of unknown function (DUF406) BEN53_RS14940 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BEN53_RS14950 PF04333 MlaA lipoprotein BEN53_RS14960 PF01226 Formate/nitrite transporter BEN53_RS14975 PF03797 Autotransporter beta-domain BEN53_RS14985 PF00589 Phage integrase family BEN53_RS14990 PF00589 Phage integrase family BEN53_RS14995 PF03466 LysR substrate binding domain BEN53_RS14995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS15000 PF02447 GntP family permease BEN53_RS15005 PF00291 Pyridoxal-phosphate dependent enzyme BEN53_RS15010 PF07690 Major Facilitator Superfamily BEN53_RS15015 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS15015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS15020 PF00072 Response regulator receiver domain BEN53_RS15020 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS15025 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS15025 PF00072 Response regulator receiver domain BEN53_RS15025 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS15025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS15030 PF02515 CoA-transferase family III BEN53_RS15035 PF03547 Membrane transport protein BEN53_RS15040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN53_RS15040 PF00205 Thiamine pyrophosphate enzyme, central domain BEN53_RS15040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN53_RS15045 PF02515 CoA-transferase family III BEN53_RS15050 PF10938 YfdX protein BEN53_RS15060 PF10810 Protein of unknown function (DUF2545) BEN53_RS15070 PF03279 Bacterial lipid A biosynthesis acyltransferase BEN53_RS15080 PF00155 Aminotransferase class I and II BEN53_RS15085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS15085 PF07694 5TMR of 5TMR-LYT BEN53_RS15085 PF06580 Histidine kinase BEN53_RS15090 PF04397 LytTr DNA-binding domain BEN53_RS15090 PF00072 Response regulator receiver domain BEN53_RS15095 PF12833 Helix-turn-helix domain BEN53_RS15100 PF05524 PEP-utilising enzyme, N-terminal BEN53_RS15100 PF00391 PEP-utilising enzyme, mobile domain BEN53_RS15100 PF02896 PEP-utilising enzyme, TIM barrel domain BEN53_RS15100 PF00381 PTS HPr component phosphorylation site BEN53_RS15100 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS15105 PF05343 M42 glutamyl aminopeptidase BEN53_RS15110 PF00557 Metallopeptidase family M24 BEN53_RS15110 PF01321 Creatinase/Prolidase N-terminal domain BEN53_RS15115 PF02378 Phosphotransferase system, EIIC BEN53_RS15120 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS15125 PF02685 Glucokinase BEN53_RS15130 PF00654 Voltage gated chloride channel BEN53_RS15135 PF10697 Protein of unknown function (DUF2502) BEN53_RS15140 PF01566 Natural resistance-associated macrophage protein BEN53_RS15145 PF01773 Na+ dependent nucleoside transporter N-terminus BEN53_RS15145 PF07662 Na+ dependent nucleoside transporter C-terminus BEN53_RS15145 PF07670 Nucleoside recognition BEN53_RS15150 PF05231 MASE1 BEN53_RS15150 PF00563 EAL domain BEN53_RS15165 PF07037 Putative transcription regulator (DUF1323) BEN53_RS15170 PF07037 Putative transcription regulator (DUF1323) BEN53_RS15185 PF00749 tRNA synthetases class I (E and Q), catalytic domain BEN53_RS15210 PF03466 LysR substrate binding domain BEN53_RS15210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS15220 PF03825 Nucleoside H+ symporter BEN53_RS15225 PF01048 Phosphorylase superfamily BEN53_RS15230 PF03502 Nucleoside-specific channel-forming protein, Tsx BEN53_RS15235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS15235 PF03466 LysR substrate binding domain BEN53_RS15240 PF13593 SBF-like CPA transporter family (DUF4137) BEN53_RS15245 PF12843 Putative quorum-sensing-regulated virulence factor BEN53_RS15250 PF01653 NAD-dependent DNA ligase adenylation domain BEN53_RS15250 PF03120 NAD-dependent DNA ligase OB-fold domain BEN53_RS15250 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BEN53_RS15250 PF12826 Helix-hairpin-helix motif BEN53_RS15250 PF00533 BRCA1 C Terminus (BRCT) domain BEN53_RS15255 PF04354 ZipA, C-terminal FtsZ-binding domain BEN53_RS15265 PF00291 Pyridoxal-phosphate dependent enzyme BEN53_RS15270 PF00381 PTS HPr component phosphorylation site BEN53_RS15275 PF00391 PEP-utilising enzyme, mobile domain BEN53_RS15275 PF05524 PEP-utilising enzyme, N-terminal BEN53_RS15275 PF02896 PEP-utilising enzyme, TIM barrel domain BEN53_RS15280 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BEN53_RS15285 PF08543 Phosphomethylpyrimidine kinase BEN53_RS15290 PF17263 Family of unknown function (DUF5329) BEN53_RS15295 PF00291 Pyridoxal-phosphate dependent enzyme BEN53_RS15300 PF00005 ABC transporter BEN53_RS15305 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS15310 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS15325 PF01380 SIS domain BEN53_RS15325 PF01418 Helix-turn-helix domain, rpiR family BEN53_RS15330 PF01380 SIS domain BEN53_RS15335 PF00367 phosphotransferase system, EIIB BEN53_RS15335 PF02378 Phosphotransferase system, EIIC BEN53_RS15340 PF00144 Beta-lactamase BEN53_RS15345 PF04261 Dyp-type peroxidase family BEN53_RS15350 PF06572 Protein of unknown function (DUF1131) BEN53_RS15355 PF11143 Protein of unknown function (DUF2919) BEN53_RS15360 PF00583 Acetyltransferase (GNAT) family BEN53_RS15365 PF01520 N-acetylmuramoyl-L-alanine amidase BEN53_RS15370 PF01218 Coproporphyrinogen III oxidase BEN53_RS15375 PF12833 Helix-turn-helix domain BEN53_RS15380 PF16365 Ethanolamine utilization protein EutK C-terminus BEN53_RS15380 PF00936 BMC domain BEN53_RS15385 PF00936 BMC domain BEN53_RS15390 PF05985 Ethanolamine ammonia-lyase light chain (EutC) BEN53_RS15395 PF06751 Ethanolamine ammonia lyase large subunit (EutB) BEN53_RS15400 PF06277 Ethanolamine utilisation protein EutA BEN53_RS15405 PF04346 Ethanolamine utilisation protein, EutH BEN53_RS15410 PF00465 Iron-containing alcohol dehydrogenase BEN53_RS15420 PF00171 Aldehyde dehydrogenase family BEN53_RS15425 PF03319 Ethanolamine utilisation protein EutN/carboxysome BEN53_RS15430 PF00936 BMC domain BEN53_RS15435 PF01515 Phosphate acetyl/butaryl transferase BEN53_RS15440 PF01923 Cobalamin adenosyltransferase BEN53_RS15445 PF06249 Ethanolamine utilisation protein EutQ BEN53_RS15450 PF10662 Ethanolamine utilisation - propanediol utilisation BEN53_RS15455 PF00936 BMC domain BEN53_RS15460 PF00390 Malic enzyme, N-terminal domain BEN53_RS15460 PF03949 Malic enzyme, NAD binding domain BEN53_RS15460 PF01515 Phosphate acetyl/butaryl transferase BEN53_RS15465 PF00923 Transaldolase/Fructose-6-phosphate aldolase BEN53_RS15470 PF02780 Transketolase, C-terminal domain BEN53_RS15470 PF00456 Transketolase, thiamine diphosphate binding domain BEN53_RS15470 PF02779 Transketolase, pyrimidine binding domain BEN53_RS15475 PF06674 Protein of unknown function (DUF1176) BEN53_RS15480 PF00293 NUDIX domain BEN53_RS15485 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BEN53_RS15485 PF13247 4Fe-4S dicluster domain BEN53_RS15485 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS15490 PF00672 HAMP domain BEN53_RS15490 PF07730 Histidine kinase BEN53_RS15490 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BEN53_RS15490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS15495 PF00873 AcrB/AcrD/AcrF family BEN53_RS15500 PF13936 Helix-turn-helix domain BEN53_RS15500 PF00665 Integrase core domain BEN53_RS15510 PF03960 ArsC family BEN53_RS15515 PF01546 Peptidase family M20/M25/M40 BEN53_RS15515 PF07687 Peptidase dimerisation domain BEN53_RS15520 PF13980 Uncharacterised protein family (UPF0370) BEN53_RS15525 PF02230 Phospholipase/Carboxylesterase BEN53_RS15530 PF13718 GNAT acetyltransferase 2 BEN53_RS15530 PF17176 tRNA-binding domain BEN53_RS15530 PF05127 Helicase BEN53_RS15530 PF08351 Domain of unknown function (DUF1726) BEN53_RS15535 PF04228 Putative neutral zinc metallopeptidase BEN53_RS15540 PF01259 SAICAR synthetase BEN53_RS15545 PF06804 NlpB/DapX lipoprotein BEN53_RS15550 PF00701 Dihydrodipicolinate synthetase family BEN53_RS15555 PF01842 ACT domain BEN53_RS15560 PF00578 AhpC/TSA family BEN53_RS15565 PF00037 4Fe-4S binding domain BEN53_RS15565 PF12798 4Fe-4S binding domain BEN53_RS15570 PF00361 Proton-conducting membrane transporter BEN53_RS15575 PF00146 NADH dehydrogenase BEN53_RS15580 PF00361 Proton-conducting membrane transporter BEN53_RS15580 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BEN53_RS15585 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BEN53_RS15590 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BEN53_RS15590 PF00361 Proton-conducting membrane transporter BEN53_RS15595 PF00374 Nickel-dependent hydrogenase BEN53_RS15595 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BEN53_RS15595 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BEN53_RS15600 PF12838 4Fe-4S dicluster domain BEN53_RS15605 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BEN53_RS15610 PF07450 Formate hydrogenlyase maturation protein HycH BEN53_RS15615 PF00158 Sigma-54 interaction domain BEN53_RS15615 PF01590 GAF domain BEN53_RS15620 PF01226 Formate/nitrite transporter BEN53_RS15625 PF01594 AI-2E family transporter BEN53_RS15630 PF01435 Peptidase family M48 BEN53_RS15635 PF03960 ArsC family BEN53_RS15640 PF00308 Bacterial dnaA protein BEN53_RS15645 PF00860 Permease family BEN53_RS15655 PF00586 AIR synthase related protein, N-terminal domain BEN53_RS15655 PF02769 AIR synthase related protein, C-terminal domain BEN53_RS15660 PF00551 Formyl transferase BEN53_RS15665 PF02503 Polyphosphate kinase middle domain BEN53_RS15665 PF17941 Polyphosphate kinase C-terminal domain 1 BEN53_RS15665 PF13090 Polyphosphate kinase C-terminal domain 2 BEN53_RS15665 PF13089 Polyphosphate kinase N-terminal domain BEN53_RS15670 PF02541 Ppx/GppA phosphatase family BEN53_RS15675 PF05231 MASE1 BEN53_RS15675 PF00563 EAL domain BEN53_RS15685 PF11119 Protein of unknown function (DUF2633) BEN53_RS15695 PF05433 Glycine zipper 2TM domain BEN53_RS15700 PF17358 Family of unknown function (DUF5384) BEN53_RS15705 PF00117 Glutamine amidotransferase class-I BEN53_RS15705 PF02540 NAD synthase BEN53_RS15705 PF00958 GMP synthase C terminal domain BEN53_RS15710 PF00478 IMP dehydrogenase / GMP reductase domain BEN53_RS15710 PF00571 CBS domain BEN53_RS15715 PF02601 Exonuclease VII, large subunit BEN53_RS15715 PF13742 OB-fold nucleic acid binding domain BEN53_RS15730 PF11924 Inverse autotransporter, beta-domain BEN53_RS15730 PF07979 Intimin C-type lectin domain BEN53_RS15730 PF02369 Bacterial Ig-like domain (group 1) BEN53_RS15730 PF09134 Invasin, domain 3 BEN53_RS15735 PF07191 zinc-ribbons BEN53_RS15740 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BEN53_RS15740 PF01926 50S ribosome-binding GTPase BEN53_RS15745 PF13360 PQQ-like domain BEN53_RS15750 PF09976 Tetratricopeptide repeat-like domain BEN53_RS15755 PF03129 Anticodon binding domain BEN53_RS15755 PF13393 Histidyl-tRNA synthetase BEN53_RS15760 PF04551 GcpE protein BEN53_RS15765 PF13464 Domain of unknown function (DUF4115) BEN53_RS15775 PF04055 Radical SAM superfamily BEN53_RS15780 PF00334 Nucleoside diphosphate kinase BEN53_RS15785 PF06832 Penicillin-Binding Protein C-terminus Family BEN53_RS15785 PF00912 Transglycosylase BEN53_RS15785 PF00905 Penicillin binding protein transpeptidase domain BEN53_RS15790 PF00207 Alpha-2-macroglobulin family BEN53_RS15790 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BEN53_RS15790 PF17962 Bacterial macroglobulin domain 6 BEN53_RS15790 PF01835 MG2 domain BEN53_RS15790 PF07678 A-macroglobulin TED domain BEN53_RS15790 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BEN53_RS15790 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BEN53_RS15790 PF07703 Alpha-2-macroglobulin bait region domain BEN53_RS15790 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BEN53_RS15795 PF00581 Rhodanese-like domain BEN53_RS15805 PF07179 SseB protein N-terminal domain BEN53_RS15805 PF14581 SseB protein C-terminal domain BEN53_RS15810 PF00883 Cytosol aminopeptidase family, catalytic domain BEN53_RS15810 PF12404 Peptidase BEN53_RS15815 PF04384 Iron-sulphur cluster assembly BEN53_RS15820 PF00111 2Fe-2S iron-sulfur cluster binding domain BEN53_RS15825 PF00012 Hsp70 protein BEN53_RS15830 PF07743 HSCB C-terminal oligomerisation domain BEN53_RS15835 PF01521 Iron-sulphur cluster biosynthesis BEN53_RS15840 PF01592 NifU-like N terminal domain BEN53_RS15845 PF00266 Aminotransferase class-V BEN53_RS15850 PF02082 Transcriptional regulator BEN53_RS15855 PF00588 SpoU rRNA Methylase family BEN53_RS15860 PF00459 Inositol monophosphatase family BEN53_RS15865 PF12146 Serine aminopeptidase, S33 BEN53_RS15870 PF00874 PRD domain BEN53_RS15875 PF12832 MFS_1 like family BEN53_RS15880 PF03466 LysR substrate binding domain BEN53_RS15880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS15885 PF00355 Rieske [2Fe-2S] domain BEN53_RS15885 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BEN53_RS15890 PF00866 Ring hydroxylating beta subunit BEN53_RS15895 PF00355 Rieske [2Fe-2S] domain BEN53_RS15900 PF00106 short chain dehydrogenase BEN53_RS15905 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS15905 PF14759 Reductase C-terminal BEN53_RS15910 PF07681 DoxX BEN53_RS15915 PF01263 Aldose 1-epimerase BEN53_RS15920 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS15920 PF00107 Zinc-binding dehydrogenase BEN53_RS15925 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS15930 PF00005 ABC transporter BEN53_RS15935 PF13407 Periplasmic binding protein domain BEN53_RS15940 PF17128 Domain of unknown function (DUF5107) BEN53_RS15940 PF13181 Tetratricopeptide repeat BEN53_RS15945 PF00480 ROK family BEN53_RS15950 PF00464 Serine hydroxymethyltransferase BEN53_RS15955 PF00042 Globin BEN53_RS15955 PF00175 Oxidoreductase NAD-binding domain BEN53_RS15955 PF00970 Oxidoreductase FAD-binding domain BEN53_RS15960 PF00543 Nitrogen regulatory protein P-II BEN53_RS15965 PF00072 Response regulator receiver domain BEN53_RS15965 PF00158 Sigma-54 interaction domain BEN53_RS15970 PF13942 YfhG lipoprotein BEN53_RS15975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS15975 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS15980 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BEN53_RS15980 PF02769 AIR synthase related protein, C-terminal domain BEN53_RS15980 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BEN53_RS15985 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS15985 PF01464 Transglycosylase SLT domain BEN53_RS15990 PF14437 MafB19-like deaminase BEN53_RS16000 PF01380 SIS domain BEN53_RS16000 PF01418 Helix-turn-helix domain, rpiR family BEN53_RS16005 PF12838 4Fe-4S dicluster domain BEN53_RS16020 PF01648 4'-phosphopantetheinyl transferase superfamily BEN53_RS16025 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BEN53_RS16030 PF11967 Recombination protein O N terminal BEN53_RS16030 PF02565 Recombination protein O C terminal BEN53_RS16035 PF01926 50S ribosome-binding GTPase BEN53_RS16035 PF07650 KH domain BEN53_RS16040 PF14622 Ribonuclease-III-like BEN53_RS16040 PF00035 Double-stranded RNA binding motif BEN53_RS16050 PF10502 Signal peptidase, peptidase S26 BEN53_RS16055 PF00679 Elongation factor G C-terminus BEN53_RS16055 PF06421 GTP-binding protein LepA C-terminus BEN53_RS16055 PF03144 Elongation factor Tu domain 2 BEN53_RS16055 PF00009 Elongation factor Tu GTP binding domain BEN53_RS16065 PF17188 MucB/RseB C-terminal domain BEN53_RS16065 PF03888 MucB/RseB N-terminal domain BEN53_RS16070 PF03872 Anti sigma-E protein RseA, N-terminal domain BEN53_RS16070 PF03873 Anti sigma-E protein RseA, C-terminal domain BEN53_RS16075 PF08281 Sigma-70, region 4 BEN53_RS16075 PF04542 Sigma-70 region 2 BEN53_RS16080 PF02910 Fumarate reductase flavoprotein C-term BEN53_RS16080 PF00890 FAD binding domain BEN53_RS16085 PF05175 Methyltransferase small domain BEN53_RS16090 PF00270 DEAD/DEAH box helicase BEN53_RS16090 PF00271 Helicase conserved C-terminal domain BEN53_RS16095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS16095 PF03466 LysR substrate binding domain BEN53_RS16100 PF01810 LysE type translocator BEN53_RS16105 PF01228 Glycine radical BEN53_RS16110 PF03167 Uracil DNA glycosylase superfamily BEN53_RS16115 PF08032 RNA 2'-O ribose methyltransferase substrate binding BEN53_RS16115 PF00588 SpoU rRNA Methylase family BEN53_RS16125 PF00085 Thioredoxin BEN53_RS16130 PF03942 DTW domain BEN53_RS16135 PF13380 CoA binding domain BEN53_RS16135 PF13607 Succinyl-CoA ligase like flavodoxin domain BEN53_RS16135 PF00583 Acetyltransferase (GNAT) family BEN53_RS16140 PF13091 PLD-like domain BEN53_RS16145 PF10043 Predicted periplasmic lipoprotein (DUF2279) BEN53_RS16150 PF00083 Sugar (and other) transporter BEN53_RS16175 PF07724 AAA domain (Cdc48 subfamily) BEN53_RS16175 PF17871 AAA lid domain BEN53_RS16175 PF10431 C-terminal, D2-small domain, of ClpB protein BEN53_RS16175 PF00004 ATPase family associated with various cellular activities (AAA) BEN53_RS16175 PF02861 Clp amino terminal domain, pathogenicity island component BEN53_RS16180 PF02578 Multi-copper polyphenol oxidoreductase laccase BEN53_RS16185 PF01479 S4 domain BEN53_RS16185 PF00849 RNA pseudouridylate synthase BEN53_RS16190 PF13525 Outer membrane lipoprotein BEN53_RS16195 PF01609 Transposase DDE domain BEN53_RS16195 PF13006 Insertion element 4 transposase N-terminal BEN53_RS16205 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BEN53_RS16215 PF01817 Chorismate mutase type II BEN53_RS16215 PF00800 Prephenate dehydratase BEN53_RS16220 PF01817 Chorismate mutase type II BEN53_RS16220 PF02153 Prephenate dehydrogenase BEN53_RS16225 PF00793 DAHP synthetase I family BEN53_RS16230 PF10973 Protein of unknown function (DUF2799) BEN53_RS16235 PF13689 YfiR/HmsC-like BEN53_RS16240 PF17152 Periplasmic sensor domain BEN53_RS16240 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS16245 PF00691 OmpA family BEN53_RS16250 PF01245 Ribosomal protein L19 BEN53_RS16255 PF01746 tRNA (Guanine-1)-methyltransferase BEN53_RS16260 PF01782 RimM N-terminal domain BEN53_RS16260 PF05239 PRC-barrel domain BEN53_RS16265 PF00886 Ribosomal protein S16 BEN53_RS16270 PF00448 SRP54-type protein, GTPase domain BEN53_RS16270 PF02881 SRP54-type protein, helical bundle domain BEN53_RS16270 PF02978 Signal peptide binding domain BEN53_RS16275 PF01578 Cytochrome C assembly protein BEN53_RS16280 PF01595 Cyclin M transmembrane N-terminal domain BEN53_RS16280 PF03471 Transporter associated domain BEN53_RS16280 PF00571 CBS domain BEN53_RS16285 PF01025 GrpE BEN53_RS16295 PF01513 ATP-NAD kinase BEN53_RS16300 PF02463 RecF/RecN/SMC N terminal domain BEN53_RS16305 PF04355 SmpA / OmlA family BEN53_RS16310 PF03658 RnfH family Ubiquitin BEN53_RS16315 PF03364 Polyketide cyclase / dehydrase and lipid transport BEN53_RS16320 PF01668 SmpB protein BEN53_RS16330 PF03797 Autotransporter beta-domain BEN53_RS16330 PF03212 Pertactin BEN53_RS16330 PF16168 Adhesin of bacterial autotransporter system, probable stalk BEN53_RS16345 PF17621 Family of unknown function (DUF5508) BEN53_RS16350 PF17612 Family of unknown function (DUF5507) BEN53_RS16360 PF00128 Alpha amylase, catalytic domain BEN53_RS16365 PF08943 CsiD BEN53_RS16370 PF01266 FAD dependent oxidoreductase BEN53_RS16375 PF00171 Aldehyde dehydrogenase family BEN53_RS16380 PF00202 Aminotransferase class-III BEN53_RS16385 PF00324 Amino acid permease BEN53_RS16390 PF07729 FCD domain BEN53_RS16390 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS16395 PF04972 BON domain BEN53_RS16395 PF01476 LysM domain BEN53_RS16400 PF01679 Proteolipid membrane potential modulator BEN53_RS16405 PF01022 Bacterial regulatory protein, arsR family BEN53_RS16410 PF00581 Rhodanese-like domain BEN53_RS16410 PF11127 Protein of unknown function (DUF2892) BEN53_RS16415 PF00816 H-NS histone family BEN53_RS16420 PF06610 L-alanine exporter BEN53_RS16425 PF09400 Protein of unknown function (DUF2002) BEN53_RS16430 PF05957 Bacterial protein of unknown function (DUF883) BEN53_RS16435 PF00155 Aminotransferase class I and II BEN53_RS16435 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS16440 PF02627 Carboxymuconolactone decarboxylase family BEN53_RS16450 PF00462 Glutaredoxin BEN53_RS16455 PF07972 NrdI Flavodoxin like BEN53_RS16460 PF08343 Ribonucleotide reductase N-terminal BEN53_RS16460 PF00317 Ribonucleotide reductase, all-alpha domain BEN53_RS16460 PF02867 Ribonucleotide reductase, barrel domain BEN53_RS16465 PF00268 Ribonucleotide reductase, small chain BEN53_RS16475 PF00571 CBS domain BEN53_RS16475 PF00005 ABC transporter BEN53_RS16480 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS16485 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BEN53_RS16490 PF07690 Major Facilitator Superfamily BEN53_RS16495 PF03591 AzlC protein BEN53_RS16500 PF05437 Branched-chain amino acid transport protein (AzlD) BEN53_RS16505 PF01047 MarR family BEN53_RS16510 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS16510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS16515 PF07690 Major Facilitator Superfamily BEN53_RS16520 PF02664 S-Ribosylhomocysteinase (LuxS) BEN53_RS16525 PF04262 Glutamate-cysteine ligase BEN53_RS16530 PF09335 SNARE associated Golgi protein BEN53_RS16535 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS16570 PF02599 Global regulator protein family BEN53_RS16575 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BEN53_RS16575 PF02272 DHHA1 domain BEN53_RS16575 PF01411 tRNA synthetases class II (A) BEN53_RS16580 PF02631 RecX family BEN53_RS16585 PF00154 recA bacterial DNA recombination protein BEN53_RS16590 PF02464 Competence-damaged protein BEN53_RS16595 PF13406 Transglycosylase SLT domain BEN53_RS16600 PF03608 PTS system enzyme II sorbitol-specific factor BEN53_RS16605 PF07663 Sorbitol phosphotransferase enzyme II C-terminus BEN53_RS16605 PF03612 Sorbitol phosphotransferase enzyme II N-terminus BEN53_RS16610 PF03829 PTS system glucitol/sorbitol-specific IIA component BEN53_RS16615 PF00106 short chain dehydrogenase BEN53_RS16620 PF06923 Glucitol operon activator protein (GutM) BEN53_RS16625 PF00455 DeoR C terminal sensor domain BEN53_RS16625 PF08220 DeoR-like helix-turn-helix domain BEN53_RS16630 PF00571 CBS domain BEN53_RS16630 PF01380 SIS domain BEN53_RS16635 PF01590 GAF domain BEN53_RS16635 PF00158 Sigma-54 interaction domain BEN53_RS16640 PF00258 Flavodoxin BEN53_RS16640 PF00753 Metallo-beta-lactamase superfamily BEN53_RS16640 PF00301 Rubredoxin BEN53_RS16645 PF18113 Rubredoxin binding C-terminal domain BEN53_RS16645 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS16650 PF07503 HypF finger BEN53_RS16650 PF01300 Telomere recombination BEN53_RS16650 PF17788 HypF Kae1-like domain BEN53_RS16650 PF00708 Acylphosphatase BEN53_RS16655 PF13247 4Fe-4S dicluster domain BEN53_RS16655 PF12800 4Fe-4S binding domain BEN53_RS16660 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS16665 PF02378 Phosphotransferase system, EIIC BEN53_RS16665 PF00367 phosphotransferase system, EIIB BEN53_RS16670 PF00232 Glycosyl hydrolase family 1 BEN53_RS16680 PF01750 Hydrogenase maturation protease BEN53_RS16685 PF07450 Formate hydrogenlyase maturation protein HycH BEN53_RS16690 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BEN53_RS16695 PF12838 4Fe-4S dicluster domain BEN53_RS16700 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BEN53_RS16700 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BEN53_RS16700 PF00374 Nickel-dependent hydrogenase BEN53_RS16705 PF00146 NADH dehydrogenase BEN53_RS16710 PF00361 Proton-conducting membrane transporter BEN53_RS16715 PF13247 4Fe-4S dicluster domain BEN53_RS16720 PF11046 Transcriptional repressor of hyc and hyp operons BEN53_RS16725 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BEN53_RS16730 PF02492 CobW/HypB/UreG, nucleotide-binding domain BEN53_RS16735 PF01455 HupF/HypC family BEN53_RS16740 PF01924 Hydrogenase formation hypA family BEN53_RS16745 PF02769 AIR synthase related protein, C-terminal domain BEN53_RS16745 PF00586 AIR synthase related protein, N-terminal domain BEN53_RS16750 PF00158 Sigma-54 interaction domain BEN53_RS16750 PF01590 GAF domain BEN53_RS16760 PF11756 Nitrous oxide-stimulated promoter BEN53_RS16765 PF05190 MutS family domain IV BEN53_RS16765 PF05188 MutS domain II BEN53_RS16765 PF05192 MutS domain III BEN53_RS16765 PF00488 MutS domain V BEN53_RS16765 PF01624 MutS domain I BEN53_RS16770 PF00149 Calcineurin-like phosphoesterase BEN53_RS16780 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BEN53_RS16785 PF02441 Flavoprotein BEN53_RS16790 PF01047 MarR family BEN53_RS16795 PF04545 Sigma-70, region 4 BEN53_RS16795 PF00140 Sigma-70 factor, region 1.2 BEN53_RS16795 PF04542 Sigma-70 region 2 BEN53_RS16795 PF04539 Sigma-70 region 3 BEN53_RS16800 PF01551 Peptidase family M23 BEN53_RS16800 PF01476 LysM domain BEN53_RS16810 PF01975 Survival protein SurE BEN53_RS16815 PF01142 tRNA pseudouridine synthase D (TruD) BEN53_RS16820 PF02542 YgbB family BEN53_RS16825 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BEN53_RS16830 PF04977 Septum formation initiator BEN53_RS16835 PF12084 Protein of unknown function (DUF3561) BEN53_RS16845 PF00009 Elongation factor Tu GTP binding domain BEN53_RS16850 PF01507 Phosphoadenosine phosphosulfate reductase family BEN53_RS16855 PF04389 Peptidase family M28 BEN53_RS16860 PF01848 Hok/gef family BEN53_RS16870 PF01507 Phosphoadenosine phosphosulfate reductase family BEN53_RS16875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BEN53_RS16875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BEN53_RS16880 PF00258 Flavodoxin BEN53_RS16880 PF00175 Oxidoreductase NAD-binding domain BEN53_RS16880 PF00667 FAD binding domain BEN53_RS16885 PF01242 6-pyruvoyl tetrahydropterin synthase BEN53_RS16890 PF01266 FAD dependent oxidoreductase BEN53_RS16900 PF04309 Glycerol-3-phosphate responsive antiterminator BEN53_RS16905 PF00766 Electron transfer flavoprotein FAD-binding domain BEN53_RS16905 PF01012 Electron transfer flavoprotein domain BEN53_RS16910 PF01012 Electron transfer flavoprotein domain BEN53_RS16915 PF00083 Sugar (and other) transporter BEN53_RS16920 PF02913 FAD linked oxidases, C-terminal domain BEN53_RS16920 PF01565 FAD binding domain BEN53_RS16930 PF07690 Major Facilitator Superfamily BEN53_RS16935 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN53_RS16935 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN53_RS16940 PF00294 pfkB family carbohydrate kinase BEN53_RS16945 PF11471 Maltoporin periplasmic N-terminal extension BEN53_RS16945 PF02264 LamB porin BEN53_RS16950 PF02378 Phosphotransferase system, EIIC BEN53_RS16950 PF00367 phosphotransferase system, EIIB BEN53_RS16955 PF00251 Glycosyl hydrolases family 32 N-terminal domain BEN53_RS16955 PF08244 Glycosyl hydrolases family 32 C terminal BEN53_RS16960 PF13407 Periplasmic binding protein domain BEN53_RS16960 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS16965 PF04055 Radical SAM superfamily BEN53_RS16975 PF04536 TPM domain BEN53_RS16985 PF04536 TPM domain BEN53_RS16990 PF03952 Enolase, N-terminal domain BEN53_RS16990 PF00113 Enolase, C-terminal TIM barrel domain BEN53_RS16995 PF00117 Glutamine amidotransferase class-I BEN53_RS16995 PF06418 CTP synthase N-terminus BEN53_RS17000 PF03819 MazG nucleotide pyrophosphohydrolase domain BEN53_RS17005 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BEN53_RS17010 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BEN53_RS17015 PF04607 Region found in RelA / SpoT proteins BEN53_RS17015 PF02824 TGS domain BEN53_RS17015 PF13291 ACT domain BEN53_RS17020 PF05958 tRNA (Uracil-5-)-methyltransferase BEN53_RS17020 PF01938 TRAM domain BEN53_RS17025 PF00072 Response regulator receiver domain BEN53_RS17025 PF01627 Hpt domain BEN53_RS17025 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BEN53_RS17025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS17025 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS17025 PF00672 HAMP domain BEN53_RS17035 PF00239 Resolvase, N terminal domain BEN53_RS17035 PF02796 Helix-turn-helix domain of resolvase BEN53_RS17040 PF07484 Phage Tail Collar Domain BEN53_RS17045 PF02413 Caudovirales tail fibre assembly protein, lambda gpK BEN53_RS17050 PF07484 Phage Tail Collar Domain BEN53_RS17155 PF04233 Phage Mu protein F like protein BEN53_RS17165 PF03237 Terminase-like family BEN53_RS17250 PF13401 AAA domain BEN53_RS17250 PF01471 Putative peptidoglycan binding domain BEN53_RS17260 PF07352 Bacteriophage Mu Gam like protein BEN53_RS17295 PF06252 Protein of unknown function (DUF1018) BEN53_RS17300 PF08765 Mor transcription activator family BEN53_RS17310 PF13378 Enolase C-terminal domain-like BEN53_RS17315 PF13378 Enolase C-terminal domain-like BEN53_RS17315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN53_RS17320 PF07690 Major Facilitator Superfamily BEN53_RS17325 PF00258 Flavodoxin BEN53_RS17330 PF00849 RNA pseudouridylate synthase BEN53_RS17335 PF04287 tRNA pseudouridine synthase C BEN53_RS17340 PF07348 Syd protein (SUKH-2) BEN53_RS17345 PF14489 QueF-like protein BEN53_RS17345 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BEN53_RS17350 PF03641 Possible lysine decarboxylase BEN53_RS17350 PF11892 Domain of unknown function (DUF3412) BEN53_RS17350 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BEN53_RS17360 PF03313 Serine dehydratase alpha chain BEN53_RS17360 PF03315 Serine dehydratase beta chain BEN53_RS17365 PF01367 5'-3' exonuclease, C-terminal SAM fold BEN53_RS17365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BEN53_RS17370 PF00465 Iron-containing alcohol dehydrogenase BEN53_RS17375 PF00596 Class II Aldolase and Adducin N-terminal domain BEN53_RS17380 PF07690 Major Facilitator Superfamily BEN53_RS17385 PF07882 L-fucose isomerase, second N-terminal domain BEN53_RS17385 PF02952 L-fucose isomerase, C-terminal domain BEN53_RS17385 PF07881 L-fucose isomerase, first N-terminal domain BEN53_RS17390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN53_RS17390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN53_RS17395 PF05025 RbsD / FucU transport protein family BEN53_RS17400 PF00455 DeoR C terminal sensor domain BEN53_RS17400 PF08220 DeoR-like helix-turn-helix domain BEN53_RS17405 PF18125 RlmM ferredoxin-like domain BEN53_RS17405 PF01728 FtsJ-like methyltransferase BEN53_RS17410 PF04241 Protein of unknown function (DUF423) BEN53_RS17415 PF03466 LysR substrate binding domain BEN53_RS17415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS17420 PF06004 Bacterial protein of unknown function (DUF903) BEN53_RS17425 PF00266 Aminotransferase class-V BEN53_RS17430 PF02657 Fe-S metabolism associated domain BEN53_RS17435 PF00899 ThiF family BEN53_RS17440 PF06725 3D domain BEN53_RS17440 PF03562 MltA specific insert domain BEN53_RS17465 PF01842 ACT domain BEN53_RS17465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN53_RS17465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEN53_RS17470 PF01380 SIS domain BEN53_RS17470 PF00571 CBS domain BEN53_RS17475 PF00155 Aminotransferase class I and II BEN53_RS17480 PF02378 Phosphotransferase system, EIIC BEN53_RS17480 PF00367 phosphotransferase system, EIIB BEN53_RS17485 PF03123 CAT RNA binding domain BEN53_RS17485 PF00874 PRD domain BEN53_RS17490 PF11741 AMIN domain BEN53_RS17490 PF01520 N-acetylmuramoyl-L-alanine amidase BEN53_RS17495 PF00696 Amino acid kinase family BEN53_RS17495 PF00583 Acetyltransferase (GNAT) family BEN53_RS17500 PF13538 UvrD-like helicase C-terminal domain BEN53_RS17505 PF13361 UvrD-like helicase C-terminal domain BEN53_RS17505 PF12705 PD-(D/E)XK nuclease superfamily BEN53_RS17505 PF00580 UvrD/REP helicase N-terminal domain BEN53_RS17510 PF00675 Insulinase (Peptidase family M16) BEN53_RS17510 PF16187 Middle or third domain of peptidase_M16 BEN53_RS17510 PF05193 Peptidase M16 inactive domain BEN53_RS17515 PF17946 RecC C-terminal domain BEN53_RS17520 PF12528 Type II secretion prepilin peptidase dependent protein C BEN53_RS17520 PF07963 Prokaryotic N-terminal methylation motif BEN53_RS17525 PF10713 Protein of unknown function (DUF2509) BEN53_RS17530 PF07963 Prokaryotic N-terminal methylation motif BEN53_RS17535 PF07963 Prokaryotic N-terminal methylation motif BEN53_RS17545 PF00303 Thymidylate synthase BEN53_RS17550 PF01790 Prolipoprotein diacylglyceryl transferase BEN53_RS17555 PF05524 PEP-utilising enzyme, N-terminal BEN53_RS17555 PF00391 PEP-utilising enzyme, mobile domain BEN53_RS17555 PF02896 PEP-utilising enzyme, TIM barrel domain BEN53_RS17555 PF01590 GAF domain BEN53_RS17560 PF00293 NUDIX domain BEN53_RS17565 PF02976 DNA mismatch repair enzyme MutH BEN53_RS17570 PF03741 Integral membrane protein TerC family BEN53_RS17575 PF06004 Bacterial protein of unknown function (DUF903) BEN53_RS17580 PF00248 Aldo/keto reductase family BEN53_RS17585 PF07690 Major Facilitator Superfamily BEN53_RS17590 PF01553 Acyltransferase BEN53_RS17590 PF00501 AMP-binding enzyme BEN53_RS17595 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS17600 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BEN53_RS17600 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BEN53_RS17605 PF03466 LysR substrate binding domain BEN53_RS17605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS17610 PF01177 Asp/Glu/Hydantoin racemase BEN53_RS17615 PF00083 Sugar (and other) transporter BEN53_RS17625 PF04962 KduI/IolB family BEN53_RS17630 PF02803 Thiolase, C-terminal domain BEN53_RS17630 PF00108 Thiolase, N-terminal domain BEN53_RS17635 PF03222 Tryptophan/tyrosine permease family BEN53_RS17645 PF01476 LysM domain BEN53_RS17645 PF01551 Peptidase family M23 BEN53_RS17655 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BEN53_RS17655 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BEN53_RS17660 PF00941 FAD binding domain in molybdopterin dehydrogenase BEN53_RS17660 PF03450 CO dehydrogenase flavoprotein C-terminal domain BEN53_RS17665 PF01799 [2Fe-2S] binding domain BEN53_RS17665 PF00111 2Fe-2S iron-sulfur cluster binding domain BEN53_RS17670 PF13188 PAS domain BEN53_RS17670 PF02954 Bacterial regulatory protein, Fis family BEN53_RS17670 PF00158 Sigma-54 interaction domain BEN53_RS17675 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BEN53_RS17675 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BEN53_RS17680 PF00291 Pyridoxal-phosphate dependent enzyme BEN53_RS17685 PF07687 Peptidase dimerisation domain BEN53_RS17685 PF01546 Peptidase family M20/M25/M40 BEN53_RS17690 PF01979 Amidohydrolase family BEN53_RS17695 PF00696 Amino acid kinase family BEN53_RS17700 PF02625 XdhC and CoxI family BEN53_RS17700 PF13478 XdhC Rossmann domain BEN53_RS17710 PF12804 MobA-like NTP transferase domain BEN53_RS17715 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS17715 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BEN53_RS17720 PF01979 Amidohydrolase family BEN53_RS17725 PF00941 FAD binding domain in molybdopterin dehydrogenase BEN53_RS17730 PF01799 [2Fe-2S] binding domain BEN53_RS17730 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BEN53_RS17730 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BEN53_RS17735 PF00860 Permease family BEN53_RS17740 PF01979 Amidohydrolase family BEN53_RS17745 PF00860 Permease family BEN53_RS17750 PF13247 4Fe-4S dicluster domain BEN53_RS17755 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS17755 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BEN53_RS17755 PF13247 4Fe-4S dicluster domain BEN53_RS17765 PF00860 Permease family BEN53_RS17775 PF00293 NUDIX domain BEN53_RS17780 PF00152 tRNA synthetases class II (D, K and N) BEN53_RS17780 PF01336 OB-fold nucleic acid binding domain BEN53_RS17790 PF02272 DHHA1 domain BEN53_RS17790 PF17768 RecJ OB domain BEN53_RS17790 PF01368 DHH family BEN53_RS17795 PF10411 Disulfide bond isomerase protein N-terminus BEN53_RS17795 PF13098 Thioredoxin-like domain BEN53_RS17800 PF00589 Phage integrase family BEN53_RS17800 PF02899 Phage integrase, N-terminal SAM-like domain BEN53_RS17805 PF00258 Flavodoxin BEN53_RS17810 PF07254 Membrane-bound toxin component of toxin-antitoxin system BEN53_RS17815 PF03937 Flavinator of succinate dehydrogenase BEN53_RS17820 PF01571 Aminomethyltransferase folate-binding domain BEN53_RS17825 PF03006 Haemolysin-III related BEN53_RS17830 PF04266 ASCH domain BEN53_RS17835 PF00232 Glycosyl hydrolase family 1 BEN53_RS17840 PF02347 Glycine cleavage system P-protein BEN53_RS17845 PF01597 Glycine cleavage H-protein BEN53_RS17850 PF01571 Aminomethyltransferase folate-binding domain BEN53_RS17850 PF08669 Glycine cleavage T-protein C-terminal barrel domain BEN53_RS17855 PF01494 FAD binding domain BEN53_RS17860 PF01494 FAD binding domain BEN53_RS17865 PF05195 Aminopeptidase P, N-terminal domain BEN53_RS17865 PF00557 Metallopeptidase family M24 BEN53_RS17870 PF03695 Uncharacterised protein family (UPF0149) BEN53_RS17880 PF05164 Cell division protein ZapA BEN53_RS17890 PF01812 5-formyltetrahydrofolate cyclo-ligase family BEN53_RS17900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEN53_RS17900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN53_RS17900 PF01842 ACT domain BEN53_RS17905 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BEN53_RS17910 PF03466 LysR substrate binding domain BEN53_RS17915 PF03466 LysR substrate binding domain BEN53_RS17915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS17920 PF01642 Methylmalonyl-CoA mutase BEN53_RS17920 PF02310 B12 binding domain BEN53_RS17930 PF00378 Enoyl-CoA hydratase/isomerase BEN53_RS17935 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BEN53_RS17935 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BEN53_RS17940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS17940 PF03466 LysR substrate binding domain BEN53_RS17945 PF04402 Protein of unknown function (DUF541) BEN53_RS17950 PF01810 LysE type translocator BEN53_RS17955 PF00924 Mechanosensitive ion channel BEN53_RS17955 PF05552 Conserved TM helix BEN53_RS17965 PF01116 Fructose-bisphosphate aldolase class-II BEN53_RS17970 PF00162 Phosphoglycerate kinase BEN53_RS17975 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEN53_RS17975 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BEN53_RS17990 PF05068 Mannitol repressor BEN53_RS17995 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BEN53_RS18000 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS18000 PF00107 Zinc-binding dehydrogenase BEN53_RS18005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS18005 PF02378 Phosphotransferase system, EIIC BEN53_RS18015 PF02779 Transketolase, pyrimidine binding domain BEN53_RS18015 PF00456 Transketolase, thiamine diphosphate binding domain BEN53_RS18015 PF02780 Transketolase, C-terminal domain BEN53_RS18020 PF01435 Peptidase family M48 BEN53_RS18025 PF00491 Arginase family BEN53_RS18030 PF17810 Arginine decarboxylase helical bundle domain BEN53_RS18030 PF17944 Arginine decarboxylase C-terminal helical extension BEN53_RS18030 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BEN53_RS18035 PF11036 Virulence promoting factor BEN53_RS18040 PF17430 Uncharacterized YqgC-like BEN53_RS18050 PF02772 S-adenosylmethionine synthetase, central domain BEN53_RS18050 PF02773 S-adenosylmethionine synthetase, C-terminal domain BEN53_RS18050 PF00438 S-adenosylmethionine synthetase, N-terminal domain BEN53_RS18055 PF00083 Sugar (and other) transporter BEN53_RS18065 PF04231 Endonuclease I BEN53_RS18070 PF04452 RNA methyltransferase BEN53_RS18075 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BEN53_RS18075 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BEN53_RS18080 PF02622 Uncharacterized ACR, COG1678 BEN53_RS18085 PF03652 Holliday junction resolvase BEN53_RS18090 PF00437 Type II/IV secretion system protein BEN53_RS18095 PF01168 Alanine racemase, N-terminal domain BEN53_RS18100 PF02325 YGGT family BEN53_RS18105 PF02594 Uncharacterised ACR, YggU family COG1872 BEN53_RS18110 PF01725 Ham1 family BEN53_RS18115 PF06969 HemN C-terminal domain BEN53_RS18115 PF04055 Radical SAM superfamily BEN53_RS18120 PF06717 Protein of unknown function (DUF1202) BEN53_RS18125 PF17763 Glutaminase/Asparaginase C-terminal domain BEN53_RS18125 PF00710 Asparaginase, N-terminal BEN53_RS18130 PF11101 Protein of unknown function (DUF2884) BEN53_RS18135 PF04320 Protein with unknown function (DUF469) BEN53_RS18140 PF02390 Putative methyltransferase BEN53_RS18150 PF00633 Helix-hairpin-helix motif BEN53_RS18150 PF00730 HhH-GPD superfamily base excision DNA repair protein BEN53_RS18150 PF14815 NUDIX domain BEN53_RS18150 PF10576 Iron-sulfur binding domain of endonuclease III BEN53_RS18155 PF04362 Bacterial Fe(2+) trafficking BEN53_RS18160 PF01464 Transglycosylase SLT domain BEN53_RS18160 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BEN53_RS18165 PF03825 Nucleoside H+ symporter BEN53_RS18170 PF01276 Orn/Lys/Arg decarboxylase, major domain BEN53_RS18170 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BEN53_RS18170 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BEN53_RS18180 PF04474 Protein of unknown function (DUF554) BEN53_RS18190 PF13356 Arm DNA-binding domain BEN53_RS18190 PF00589 Phage integrase family BEN53_RS18245 PF05321 Haemolysin expression modulating protein BEN53_RS18290 PF16168 Adhesin of bacterial autotransporter system, probable stalk BEN53_RS18290 PF03797 Autotransporter beta-domain BEN53_RS18290 PF13018 Extended Signal Peptide of Type V secretion system BEN53_RS18305 PF06006 Bacterial protein of unknown function (DUF905) BEN53_RS18315 PF06067 Domain of unknown function (DUF932) BEN53_RS18320 PF03230 Antirestriction protein BEN53_RS18325 PF04002 RadC-like JAB domain BEN53_RS18330 PF06174 Protein of unknown function (DUF987) BEN53_RS18335 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A BEN53_RS18340 PF06755 CbtA_toxin of type IV toxin-antitoxin system BEN53_RS18360 PF05159 Capsule polysaccharide biosynthesis protein BEN53_RS18365 PF05159 Capsule polysaccharide biosynthesis protein BEN53_RS18370 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BEN53_RS18375 PF00483 Nucleotidyl transferase BEN53_RS18380 PF04321 RmlD substrate binding domain BEN53_RS18385 PF16363 GDP-mannose 4,6 dehydratase BEN53_RS18395 PF00535 Glycosyl transferase family 2 BEN53_RS18405 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BEN53_RS18405 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BEN53_RS18405 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BEN53_RS18415 PF00535 Glycosyl transferase family 2 BEN53_RS18430 PF00005 ABC transporter BEN53_RS18435 PF01061 ABC-2 type transporter BEN53_RS18440 PF10531 SLBB domain BEN53_RS18440 PF02563 Polysaccharide biosynthesis/export protein BEN53_RS18450 PF04612 Type II secretion system (T2SS), protein M BEN53_RS18455 PF12693 GspL periplasmic domain BEN53_RS18460 PF03934 Type II secretion system (T2SS), protein K BEN53_RS18465 PF07963 Prokaryotic N-terminal methylation motif BEN53_RS18465 PF11612 Type II secretion system (T2SS), protein J BEN53_RS18470 PF07963 Prokaryotic N-terminal methylation motif BEN53_RS18470 PF02501 Type II secretion system (T2SS), protein I BEN53_RS18475 PF12019 Type II transport protein GspH BEN53_RS18480 PF07963 Prokaryotic N-terminal methylation motif BEN53_RS18480 PF08334 Type II secretion system (T2SS), protein G BEN53_RS18485 PF00482 Type II secretion system (T2SS), protein F BEN53_RS18490 PF00437 Type II/IV secretion system protein BEN53_RS18495 PF00263 Bacterial type II and III secretion system protein BEN53_RS18495 PF03958 Bacterial type II/III secretion system short domain BEN53_RS18500 PF11356 Type II secretion system protein C BEN53_RS18505 PF16549 Type II secretion system (T2SS) pilotin, S protein BEN53_RS18510 PF01478 Type IV leader peptidase family BEN53_RS18510 PF06750 Bacterial Peptidase A24 N-terminal domain BEN53_RS18520 PF13402 Peptidase M60, enhancin and enhancin-like BEN53_RS18520 PF17291 N-terminal domain of M60-like peptidases BEN53_RS18520 PF13322 Domain of unknown function (DUF4092) BEN53_RS18530 PF02652 L-lactate permease BEN53_RS18535 PF01274 Malate synthase BEN53_RS18540 PF03928 Haem-degrading BEN53_RS18545 PF13183 4Fe-4S dicluster domain BEN53_RS18545 PF02754 Cysteine-rich domain BEN53_RS18550 PF01565 FAD binding domain BEN53_RS18555 PF01565 FAD binding domain BEN53_RS18555 PF02913 FAD linked oxidases, C-terminal domain BEN53_RS18560 PF07729 FCD domain BEN53_RS18560 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS18570 PF00501 AMP-binding enzyme BEN53_RS18570 PF14535 AMP-binding enzyme C-terminal domain BEN53_RS18580 PF00550 Phosphopantetheine attachment site BEN53_RS18585 PF00155 Aminotransferase class I and II BEN53_RS18595 PF03739 Lipopolysaccharide export system permease LptF/LptG BEN53_RS18600 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) BEN53_RS18610 PF01943 Polysaccharide biosynthesis protein BEN53_RS18630 PF01384 Phosphate transporter family BEN53_RS18635 PF05257 CHAP domain BEN53_RS18635 PF03738 Glutathionylspermidine synthase preATP-grasp BEN53_RS18640 PF02798 Glutathione S-transferase, N-terminal domain BEN53_RS18645 PF01455 HupF/HypC family BEN53_RS18650 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BEN53_RS18655 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE BEN53_RS18660 PF01750 Hydrogenase maturation protease BEN53_RS18665 PF00374 Nickel-dependent hydrogenase BEN53_RS18670 PF03916 Polysulphide reductase, NrfD BEN53_RS18675 PF13247 4Fe-4S dicluster domain BEN53_RS18680 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal BEN53_RS18680 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BEN53_RS18690 PF11115 Protein of unknown function (DUF2623) BEN53_RS18705 PF00248 Aldo/keto reductase family BEN53_RS18710 PF03350 Uncharacterized protein family, UPF0114 BEN53_RS18720 PF02472 Biopolymer transport protein ExbD/TolR BEN53_RS18725 PF01618 MotA/TolQ/ExbB proton channel family BEN53_RS18735 PF01053 Cys/Met metabolism PLP-dependent enzyme BEN53_RS18740 PF09335 SNARE associated Golgi protein BEN53_RS18745 PF12833 Helix-turn-helix domain BEN53_RS18745 PF06719 AraC-type transcriptional regulator N-terminus BEN53_RS18750 PF00465 Iron-containing alcohol dehydrogenase BEN53_RS18755 PF00248 Aldo/keto reductase family BEN53_RS18760 PF12883 Protein of unknown function (DUF3828) BEN53_RS18765 PF04728 Lipoprotein leucine-zipper BEN53_RS18770 PF08497 Radical SAM N-terminal BEN53_RS18770 PF11842 Domain of unknown function (DUF3362) BEN53_RS18770 PF04055 Radical SAM superfamily BEN53_RS18775 PF07732 Multicopper oxidase BEN53_RS18775 PF00394 Multicopper oxidase BEN53_RS18775 PF07731 Multicopper oxidase BEN53_RS18780 PF01553 Acyltransferase BEN53_RS18785 PF00521 DNA gyrase/topoisomerase IV, subunit A BEN53_RS18785 PF03989 DNA gyrase C-terminal domain, beta-propeller BEN53_RS18790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS18800 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA BEN53_RS18805 PF15723 Motility quorum-sensing regulator, toxin of MqsA BEN53_RS18810 PF06445 GyrI-like small molecule binding domain BEN53_RS18815 PF04076 Bacterial OB fold (BOF) protein BEN53_RS18820 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS18820 PF00072 Response regulator receiver domain BEN53_RS18825 PF08521 Two-component sensor kinase N-terminal BEN53_RS18825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS18825 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS18830 PF10840 Protein of unknown function (DUF2645) BEN53_RS18840 PF02525 Flavodoxin-like fold BEN53_RS18845 PF03992 Antibiotic biosynthesis monooxygenase BEN53_RS18850 PF00986 DNA gyrase B subunit, carboxyl terminus BEN53_RS18850 PF00204 DNA gyrase B BEN53_RS18850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS18850 PF01751 Toprim domain BEN53_RS18855 PF05728 Uncharacterised protein family (UPF0227) BEN53_RS18860 PF00149 Calcineurin-like phosphoesterase BEN53_RS18865 PF06853 Protein of unknown function (DUF1249) BEN53_RS18870 PF00293 NUDIX domain BEN53_RS18875 PF02321 Outer membrane efflux protein BEN53_RS18885 PF06693 Protein of unknown function (DUF1190) BEN53_RS18890 PF03738 Glutathionylspermidine synthase preATP-grasp BEN53_RS18895 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BEN53_RS18900 PF02535 ZIP Zinc transporter BEN53_RS18910 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BEN53_RS18915 PF04380 Membrane fusogenic activity BEN53_RS18920 PF00419 Fimbrial protein BEN53_RS18925 PF13954 PapC N-terminal domain BEN53_RS18925 PF13953 PapC C-terminal domain BEN53_RS18925 PF00577 Outer membrane usher protein BEN53_RS18930 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS18930 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS18940 PF08971 Glycogen synthesis protein BEN53_RS18945 PF07290 Protein of unknown function (DUF1449) BEN53_RS18950 PF01145 SPFH domain / Band 7 family BEN53_RS18950 PF15975 Flotillin BEN53_RS18965 PF01467 Cytidylyltransferase-like BEN53_RS18965 PF00294 pfkB family carbohydrate kinase BEN53_RS18970 PF08335 GlnD PII-uridylyltransferase BEN53_RS18970 PF03710 Glutamate-ammonia ligase adenylyltransferase BEN53_RS18975 PF01928 CYTH domain BEN53_RS18985 PF08239 Bacterial SH3 domain BEN53_RS18990 PF01966 HD domain BEN53_RS18990 PF01743 Poly A polymerase head domain BEN53_RS18990 PF12627 Probable RNA and SrmB- binding site of polymerase A BEN53_RS18995 PF02673 Bacitracin resistance protein BacA BEN53_RS19000 PF02152 Dihydroneopterin aldolase BEN53_RS19005 PF02660 Glycerol-3-phosphate acyltransferase BEN53_RS19010 PF03466 LysR substrate binding domain BEN53_RS19010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS19020 PF05681 Fumarate hydratase (Fumerase) BEN53_RS19025 PF05683 Fumarase C-terminus BEN53_RS19030 PF00939 Sodium:sulfate symporter transmembrane region BEN53_RS19035 PF00814 Glycoprotease family BEN53_RS19045 PF01165 Ribosomal protein S21 BEN53_RS19050 PF01807 CHC2 zinc finger BEN53_RS19050 PF08275 DNA primase catalytic core, N-terminal domain BEN53_RS19050 PF10410 DnaB-helicase binding domain of primase BEN53_RS19050 PF08278 DNA primase DnaG DnaB-binding BEN53_RS19060 PF04545 Sigma-70, region 4 BEN53_RS19060 PF00140 Sigma-70 factor, region 1.2 BEN53_RS19060 PF04546 Sigma-70, non-essential region BEN53_RS19060 PF03979 Sigma-70 factor, region 1.1 BEN53_RS19060 PF04542 Sigma-70 region 2 BEN53_RS19060 PF04539 Sigma-70 region 3 BEN53_RS19065 PF03167 Uracil DNA glycosylase superfamily BEN53_RS19075 PF08021 Siderophore-interacting FAD-binding domain BEN53_RS19075 PF04954 Siderophore-interacting protein BEN53_RS19080 PF03551 Transcriptional regulator PadR-like family BEN53_RS19085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BEN53_RS19085 PF08447 PAS fold BEN53_RS19095 PF00202 Aminotransferase class-III BEN53_RS19100 PF01588 Putative tRNA binding domain BEN53_RS19110 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS19115 PF02929 Beta galactosidase small chain BEN53_RS19115 PF16353 Domain of unknown function(DUF4981) BEN53_RS19115 PF00703 Glycosyl hydrolases family 2 BEN53_RS19115 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BEN53_RS19115 PF02837 Glycosyl hydrolases family 2, sugar binding domain BEN53_RS19120 PF04074 YhcH/YjgK/YiaL BEN53_RS19125 PF13520 Amino acid permease BEN53_RS19135 PF01204 Trehalase BEN53_RS19140 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BEN53_RS19140 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS19145 PF05175 Methyltransferase small domain BEN53_RS19150 PF01863 Protein of unknown function DUF45 BEN53_RS19155 PF02698 DUF218 domain BEN53_RS19160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEN53_RS19165 PF03741 Integral membrane protein TerC family BEN53_RS19170 PF00375 Sodium:dicarboxylate symporter family BEN53_RS19175 PF10688 Bacterial inner membrane protein BEN53_RS19180 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BEN53_RS19180 PF08666 SAF domain BEN53_RS19185 PF02614 Glucuronate isomerase BEN53_RS19190 PF07690 Major Facilitator Superfamily BEN53_RS19200 PF16967 E-set like domain BEN53_RS19200 PF15976 CS1-pili formation C-terminal BEN53_RS19200 PF17271 TcfC Usher-like barrel domain BEN53_RS19205 PF04449 CS1 type fimbrial major subunit BEN53_RS19215 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS19215 PF07729 FCD domain BEN53_RS19220 PF09335 SNARE associated Golgi protein BEN53_RS19225 PF13721 SecD export protein N-terminal TM region BEN53_RS19230 PF06476 Protein of unknown function (DUF1090) BEN53_RS19235 PF05957 Bacterial protein of unknown function (DUF883) BEN53_RS19240 PF07332 Putative Actinobacterial Holin-X, holin superfamily III BEN53_RS19245 PF13997 YqjK-like protein BEN53_RS19250 PF07681 DoxX BEN53_RS19255 PF13409 Glutathione S-transferase, N-terminal domain BEN53_RS19260 PF05656 Protein of unknown function (DUF805) BEN53_RS19265 PF05656 Protein of unknown function (DUF805) BEN53_RS19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS19275 PF03466 LysR substrate binding domain BEN53_RS19280 PF02678 Pirin BEN53_RS19280 PF17954 Quercetinase C-terminal cupin domain BEN53_RS19290 PF03313 Serine dehydratase alpha chain BEN53_RS19305 PF03315 Serine dehydratase beta chain BEN53_RS19305 PF03313 Serine dehydratase alpha chain BEN53_RS19310 PF01042 Endoribonuclease L-PSP BEN53_RS19315 PF01228 Glycine radical BEN53_RS19315 PF02901 Pyruvate formate lyase-like BEN53_RS19320 PF00871 Acetokinase family BEN53_RS19325 PF03222 Tryptophan/tyrosine permease family BEN53_RS19330 PF00291 Pyridoxal-phosphate dependent enzyme BEN53_RS19340 PF03466 LysR substrate binding domain BEN53_RS19340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS19365 PF02595 Glycerate kinase family BEN53_RS19370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BEN53_RS19370 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BEN53_RS19375 PF03328 HpcH/HpaI aldolase/citrate lyase family BEN53_RS19380 PF07690 Major Facilitator Superfamily BEN53_RS19385 PF08666 SAF domain BEN53_RS19385 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus BEN53_RS19390 PF15937 prlF antitoxin for toxin YhaV_toxin BEN53_RS19395 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system BEN53_RS19400 PF08220 DeoR-like helix-turn-helix domain BEN53_RS19400 PF00455 DeoR C terminal sensor domain BEN53_RS19410 PF08013 Tagatose 6 phosphate kinase BEN53_RS19415 PF03830 PTS system sorbose subfamily IIB component BEN53_RS19420 PF03609 PTS system sorbose-specific iic component BEN53_RS19425 PF03613 PTS system mannose/fructose/sorbose family IID component BEN53_RS19430 PF03610 PTS system fructose IIA component BEN53_RS19435 PF01979 Amidohydrolase family BEN53_RS19440 PF01380 SIS domain BEN53_RS19445 PF01116 Fructose-bisphosphate aldolase class-II BEN53_RS19450 PF03830 PTS system sorbose subfamily IIB component BEN53_RS19455 PF03609 PTS system sorbose-specific iic component BEN53_RS19460 PF03613 PTS system mannose/fructose/sorbose family IID component BEN53_RS19465 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BEN53_RS19470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEN53_RS19475 PF04348 LppC putative lipoprotein BEN53_RS19480 PF02021 Uncharacterised protein family UPF0102 BEN53_RS19485 PF13580 SIS domain BEN53_RS19490 PF04972 BON domain BEN53_RS19495 PF03773 Predicted permease BEN53_RS19500 PF13460 NAD(P)H-binding BEN53_RS19505 PF01965 DJ-1/PfpI family BEN53_RS19515 PF01541 GIY-YIG catalytic domain BEN53_RS19520 PF13508 Acetyltransferase (GNAT) domain BEN53_RS19525 PF02036 SCP-2 sterol transfer family BEN53_RS19530 PF01136 Peptidase family U32 BEN53_RS19535 PF01136 Peptidase family U32 BEN53_RS19540 PF00296 Luciferase-like monooxygenase BEN53_RS19545 PF03222 Tryptophan/tyrosine permease family BEN53_RS19550 PF00271 Helicase conserved C-terminal domain BEN53_RS19550 PF00270 DEAD/DEAH box helicase BEN53_RS19550 PF12343 Cold shock protein DEAD box A BEN53_RS19550 PF03880 DbpA RNA binding domain BEN53_RS19560 PF07719 Tetratricopeptide repeat BEN53_RS19560 PF13181 Tetratricopeptide repeat BEN53_RS19565 PF00013 KH domain BEN53_RS19565 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BEN53_RS19565 PF00575 S1 RNA binding domain BEN53_RS19565 PF03725 3' exoribonuclease family, domain 2 BEN53_RS19565 PF01138 3' exoribonuclease family, domain 1 BEN53_RS19570 PF00312 Ribosomal protein S15 BEN53_RS19575 PF09157 Pseudouridine synthase II TruB, C-terminal BEN53_RS19575 PF01509 TruB family pseudouridylate synthase (N terminal domain) BEN53_RS19575 PF16198 tRNA pseudouridylate synthase B C-terminal domain BEN53_RS19580 PF02033 Ribosome-binding factor A BEN53_RS19585 PF00009 Elongation factor Tu GTP binding domain BEN53_RS19585 PF08364 Bacterial translation initiation factor IF-2 associated region BEN53_RS19585 PF04760 Translation initiation factor IF-2, N-terminal region BEN53_RS19585 PF11987 Translation-initiation factor 2 BEN53_RS19590 PF00575 S1 RNA binding domain BEN53_RS19590 PF08529 NusA N-terminal domain BEN53_RS19590 PF13184 NusA-like KH domain BEN53_RS19595 PF02576 RimP N-terminal domain BEN53_RS19595 PF17384 RimP C-terminal SH3 domain BEN53_RS19605 PF00764 Arginosuccinate synthase BEN53_RS19610 PF00884 Sulfatase BEN53_RS19620 PF03840 Preprotein translocase SecG subunit BEN53_RS19625 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEN53_RS19625 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEN53_RS19625 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEN53_RS19625 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEN53_RS19630 PF00809 Pterin binding enzyme BEN53_RS19635 PF00004 ATPase family associated with various cellular activities (AAA) BEN53_RS19635 PF17862 AAA+ lid domain BEN53_RS19635 PF06480 FtsH Extracellular BEN53_RS19635 PF01434 Peptidase family M41 BEN53_RS19640 PF01728 FtsJ-like methyltransferase BEN53_RS19645 PF01985 CRS1 / YhbY (CRM) domain BEN53_RS19650 PF03449 Transcription elongation factor, N-terminal BEN53_RS19650 PF01272 Transcription elongation factor, GreA/GreB, C-term BEN53_RS19655 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BEN53_RS19660 PF01018 GTP1/OBG BEN53_RS19660 PF01926 50S ribosome-binding GTPase BEN53_RS19665 PF00892 EamA-like transporter family BEN53_RS19670 PF01016 Ribosomal L27 protein BEN53_RS19675 PF00829 Ribosomal prokaryotic L21 protein BEN53_RS19680 PF00348 Polyprenyl synthetase BEN53_RS19685 PF13693 Winged helix-turn-helix DNA-binding BEN53_RS19690 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BEN53_RS19695 PF01722 BolA-like protein BEN53_RS19700 PF13466 STAS domain BEN53_RS19705 PF05494 MlaC protein BEN53_RS19710 PF02470 MlaD protein BEN53_RS19715 PF02405 Permease MlaE BEN53_RS19720 PF00005 ABC transporter BEN53_RS19725 PF01699 Sodium/calcium exchanger protein BEN53_RS19730 PF01380 SIS domain BEN53_RS19730 PF00571 CBS domain BEN53_RS19740 PF06835 Lipopolysaccharide-assembly, LptC-related BEN53_RS19745 PF03968 OstA-like protein BEN53_RS19750 PF12399 Branched-chain amino acid ATP-binding cassette transporter BEN53_RS19750 PF00005 ABC transporter BEN53_RS19755 PF04552 Sigma-54, DNA binding domain BEN53_RS19755 PF04963 Sigma-54 factor, core binding domain BEN53_RS19755 PF00309 Sigma-54 factor, Activator interacting domain (AID) BEN53_RS19760 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BEN53_RS19765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS19770 PF03668 P-loop ATPase protein family BEN53_RS19775 PF00381 PTS HPr component phosphorylation site BEN53_RS19780 PF10707 PhoP regulatory network protein YrbL BEN53_RS19785 PF00912 Transglycosylase BEN53_RS19795 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS19795 PF18415 Histidine kinase receptor ArcB trans-membrane domain BEN53_RS19795 PF00072 Response regulator receiver domain BEN53_RS19795 PF00989 PAS fold BEN53_RS19795 PF01627 Hpt domain BEN53_RS19795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS19800 PF04055 Radical SAM superfamily BEN53_RS19800 PF16199 Radical_SAM C-terminal domain BEN53_RS19815 PF01493 GXGXG motif BEN53_RS19815 PF00310 Glutamine amidotransferases class-II BEN53_RS19815 PF04898 Glutamate synthase central domain BEN53_RS19815 PF01645 Conserved region in glutamate synthase BEN53_RS19820 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BEN53_RS19820 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS19825 PF06250 YhcG PDDEXK nuclease domain BEN53_RS19825 PF17761 DUF1016 N-terminal domain BEN53_RS19830 PF04074 YhcH/YjgK/YiaL BEN53_RS19835 PF00480 ROK family BEN53_RS19840 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase BEN53_RS19845 PF07690 Major Facilitator Superfamily BEN53_RS19850 PF00701 Dihydrodipicolinate synthetase family BEN53_RS19855 PF07729 FCD domain BEN53_RS19855 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS19865 PF03606 C4-dicarboxylate anaerobic carrier BEN53_RS19870 PF04386 Stringent starvation protein B BEN53_RS19875 PF02798 Glutathione S-transferase, N-terminal domain BEN53_RS19875 PF00043 Glutathione S-transferase, C-terminal domain BEN53_RS19890 PF00380 Ribosomal protein S9/S16 BEN53_RS19895 PF00572 Ribosomal protein L13 BEN53_RS19900 PF03969 AFG1-like ATPase BEN53_RS19905 PF06295 Protein of unknown function (DUF1043) BEN53_RS19910 PF13180 PDZ domain BEN53_RS19910 PF00595 PDZ domain BEN53_RS19915 PF13180 PDZ domain BEN53_RS19920 PF00056 lactate/malate dehydrogenase, NAD binding domain BEN53_RS19920 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BEN53_RS19925 PF02863 Arginine repressor, C-terminal domain BEN53_RS19925 PF01316 Arginine repressor, DNA binding domain BEN53_RS19930 PF07338 Protein of unknown function (DUF1471) BEN53_RS19935 PF01337 Barstar (barnase inhibitor) BEN53_RS19940 PF04632 Fusaric acid resistance protein family BEN53_RS19945 PF13533 Biotin-lipoyl like BEN53_RS19950 PF07869 Protein of unknown function (DUF1656) BEN53_RS19955 PF03466 LysR substrate binding domain BEN53_RS19955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS19960 PF01523 Putative modulator of DNA gyrase BEN53_RS19965 PF13116 Protein of unknown function BEN53_RS19965 PF13502 AsmA-like C-terminal region BEN53_RS19970 PF10150 Ribonuclease E/G family BEN53_RS19970 PF00575 S1 RNA binding domain BEN53_RS19975 PF02545 Maf-like protein BEN53_RS19980 PF04093 rod shape-determining protein MreD BEN53_RS19985 PF04085 rod shape-determining protein MreC BEN53_RS20005 PF00563 EAL domain BEN53_RS20005 PF17157 Gammaproteobacterial periplasmic sensor domain BEN53_RS20005 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS20010 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS20010 PF00107 Zinc-binding dehydrogenase BEN53_RS20020 PF00364 Biotin-requiring enzyme BEN53_RS20025 PF00289 Biotin carboxylase, N-terminal domain BEN53_RS20025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BEN53_RS20025 PF02785 Biotin carboxylase C-terminal domain BEN53_RS20035 PF00294 pfkB family carbohydrate kinase BEN53_RS20040 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS20045 PF00005 ABC transporter BEN53_RS20050 PF13407 Periplasmic binding protein domain BEN53_RS20055 PF01116 Fructose-bisphosphate aldolase class-II BEN53_RS20060 PF00455 DeoR C terminal sensor domain BEN53_RS20060 PF08220 DeoR-like helix-turn-helix domain BEN53_RS20065 PF00294 pfkB family carbohydrate kinase BEN53_RS20070 PF06196 Protein of unknown function (DUF997) BEN53_RS20075 PF00474 Sodium:solute symporter family BEN53_RS20085 PF01207 Dihydrouridine synthase (Dus) BEN53_RS20090 PF02954 Bacterial regulatory protein, Fis family BEN53_RS20095 PF01555 DNA methylase BEN53_RS20100 PF10831 Protein of unknown function (DUF2556) BEN53_RS20105 PF08361 MAATS-type transcriptional repressor, C-terminal region BEN53_RS20105 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS20115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS20115 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS20120 PF00873 AcrB/AcrD/AcrF family BEN53_RS20140 PF00497 Bacterial extracellular solute-binding proteins, family 3 BEN53_RS20145 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS20150 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS20155 PF00005 ABC transporter BEN53_RS20195 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS20200 PF07369 Protein of unknown function (DUF1488) BEN53_RS20205 PF01488 Shikimate / quinate 5-dehydrogenase BEN53_RS20205 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BEN53_RS20205 PF08501 Shikimate dehydrogenase substrate binding domain BEN53_RS20210 PF01300 Telomere recombination BEN53_RS20215 PF01396 Topoisomerase DNA binding C4 zinc finger BEN53_RS20220 PF04361 Protein of unknown function (DUF494) BEN53_RS20225 PF17782 DprA winged helix domain BEN53_RS20225 PF02481 DNA recombination-mediator protein A BEN53_RS20230 PF01327 Polypeptide deformylase BEN53_RS20235 PF02911 Formyl transferase, C-terminal domain BEN53_RS20235 PF00551 Formyl transferase BEN53_RS20240 PF01029 NusB family BEN53_RS20240 PF01189 16S rRNA methyltransferase RsmB/F BEN53_RS20245 PF02254 TrkA-N domain BEN53_RS20245 PF02080 TrkA-C domain BEN53_RS20250 PF01741 Large-conductance mechanosensitive channel, MscL BEN53_RS20255 PF03889 Alternative ribosome-rescue factor A BEN53_RS20260 PF13411 MerR HTH family regulatory protein BEN53_RS20265 PF09350 Domain of unknown function (DUF1992) BEN53_RS20270 PF01196 Ribosomal protein L17 BEN53_RS20275 PF01000 RNA polymerase Rpb3/RpoA insert domain BEN53_RS20275 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BEN53_RS20275 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BEN53_RS20280 PF01479 S4 domain BEN53_RS20280 PF00163 Ribosomal protein S4/S9 N-terminal domain BEN53_RS20285 PF00411 Ribosomal protein S11 BEN53_RS20290 PF00416 Ribosomal protein S13/S18 BEN53_RS20295 PF00444 Ribosomal protein L36 BEN53_RS20300 PF00344 SecY translocase BEN53_RS20305 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BEN53_RS20310 PF00327 Ribosomal protein L30p/L7e BEN53_RS20315 PF03719 Ribosomal protein S5, C-terminal domain BEN53_RS20315 PF00333 Ribosomal protein S5, N-terminal domain BEN53_RS20320 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BEN53_RS20325 PF00347 Ribosomal protein L6 BEN53_RS20330 PF00410 Ribosomal protein S8 BEN53_RS20335 PF00253 Ribosomal protein S14p/S29e BEN53_RS20340 PF00673 ribosomal L5P family C-terminus BEN53_RS20340 PF00281 Ribosomal protein L5 BEN53_RS20345 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BEN53_RS20345 PF00467 KOW motif BEN53_RS20350 PF00238 Ribosomal protein L14p/L23e BEN53_RS20355 PF00366 Ribosomal protein S17 BEN53_RS20360 PF00831 Ribosomal L29 protein BEN53_RS20365 PF00252 Ribosomal protein L16p/L10e BEN53_RS20370 PF07650 KH domain BEN53_RS20370 PF00189 Ribosomal protein S3, C-terminal domain BEN53_RS20375 PF00237 Ribosomal protein L22p/L17e BEN53_RS20380 PF00203 Ribosomal protein S19 BEN53_RS20385 PF00181 Ribosomal Proteins L2, RNA binding domain BEN53_RS20385 PF03947 Ribosomal Proteins L2, C-terminal domain BEN53_RS20390 PF00276 Ribosomal protein L23 BEN53_RS20395 PF00573 Ribosomal protein L4/L1 family BEN53_RS20400 PF00297 Ribosomal protein L3 BEN53_RS20405 PF00338 Ribosomal protein S10p/S20e BEN53_RS20415 PF01478 Type IV leader peptidase family BEN53_RS20420 PF00210 Ferritin-like domain BEN53_RS20425 PF04324 BFD-like [2Fe-2S] binding domain BEN53_RS20435 PF03144 Elongation factor Tu domain 2 BEN53_RS20435 PF00009 Elongation factor Tu GTP binding domain BEN53_RS20435 PF03143 Elongation factor Tu C-terminal domain BEN53_RS20440 PF03764 Elongation factor G, domain IV BEN53_RS20440 PF00009 Elongation factor Tu GTP binding domain BEN53_RS20440 PF00679 Elongation factor G C-terminus BEN53_RS20440 PF03144 Elongation factor Tu domain 2 BEN53_RS20440 PF14492 Elongation Factor G, domain II BEN53_RS20445 PF00177 Ribosomal protein S7p/S5e BEN53_RS20450 PF00164 Ribosomal protein S12/S23 BEN53_RS20455 PF04077 DsrH like protein BEN53_RS20460 PF02635 DsrE/DsrF-like family BEN53_RS20465 PF02635 DsrE/DsrF-like family BEN53_RS20470 PF13309 HTH domain BEN53_RS20470 PF08348 YheO-like PAS domain BEN53_RS20475 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BEN53_RS20475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BEN53_RS20480 PF04102 SlyX BEN53_RS20485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BEN53_RS20490 PF09526 Probable metal-binding protein (DUF2387) BEN53_RS20495 PF00999 Sodium/hydrogen exchanger family BEN53_RS20495 PF02254 TrkA-N domain BEN53_RS20500 PF02525 Flavodoxin-like fold BEN53_RS20510 PF00005 ABC transporter BEN53_RS20510 PF12848 ABC transporter BEN53_RS20515 PF00561 alpha/beta hydrolase fold BEN53_RS20520 PF06794 Uncharacterised protein family (UPF0270) BEN53_RS20525 PF00485 Phosphoribulokinase / Uridine kinase family BEN53_RS20530 PF02566 OsmC-like protein BEN53_RS20540 PF13545 Crp-like helix-turn-helix domain BEN53_RS20540 PF00027 Cyclic nucleotide-binding domain BEN53_RS20545 PF12805 FUSC-like inner membrane protein yccS BEN53_RS20550 PF00202 Aminotransferase class-III BEN53_RS20555 PF00117 Glutamine amidotransferase class-I BEN53_RS20560 PF02661 Fic/DOC family BEN53_RS20565 PF10832 Protein of unknown function (DUF2559) BEN53_RS20570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BEN53_RS20575 PF07690 Major Facilitator Superfamily BEN53_RS20580 PF18267 Rubredoxin NAD+ reductase C-terminal domain BEN53_RS20580 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BEN53_RS20580 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BEN53_RS20580 PF04324 BFD-like [2Fe-2S] binding domain BEN53_RS20580 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS20585 PF13806 Rieske-like [2Fe-2S] domain BEN53_RS20590 PF01226 Formate/nitrite transporter BEN53_RS20595 PF10414 Sirohaem synthase dimerisation region BEN53_RS20595 PF14824 Sirohaem biosynthesis protein central BEN53_RS20595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BEN53_RS20600 PF13978 Protein of unknown function (DUF4223) BEN53_RS20605 PF00665 Integrase core domain BEN53_RS20605 PF13936 Helix-turn-helix domain BEN53_RS20610 PF00155 Aminotransferase class I and II BEN53_RS20615 PF10797 Protein of unknown function BEN53_RS20620 PF10941 Protein of unknown function DUF2620 BEN53_RS20625 PF02126 Phosphotriesterase family BEN53_RS20630 PF01676 Metalloenzyme superfamily BEN53_RS20635 PF01168 Alanine racemase, N-terminal domain BEN53_RS20645 PF14502 Helix-turn-helix domain BEN53_RS20645 PF14503 YhfZ C-terminal domain BEN53_RS20650 PF00579 tRNA synthetases class I (W and Y) BEN53_RS20655 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS20660 PF00834 Ribulose-phosphate 3 epimerase family BEN53_RS20665 PF02086 D12 class N6 adenine-specific DNA methyltransferase BEN53_RS20670 PF05036 Sporulation related domain BEN53_RS20675 PF01761 3-dehydroquinate synthase BEN53_RS20680 PF01202 Shikimate kinase BEN53_RS20685 PF03958 Bacterial type II/III secretion system short domain BEN53_RS20685 PF00263 Bacterial type II and III secretion system protein BEN53_RS20690 PF10748 DNA utilization proteins HofP BEN53_RS20700 PF05137 Fimbrial assembly protein (PilN) BEN53_RS20710 PF17092 Penicillin-binding protein OB-like domain BEN53_RS20710 PF00905 Penicillin binding protein transpeptidase domain BEN53_RS20710 PF00912 Transglycosylase BEN53_RS20715 PF00293 NUDIX domain BEN53_RS20720 PF07095 Intracellular growth attenuator protein IgaA BEN53_RS20725 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS20730 PF01479 S4 domain BEN53_RS20735 PF01430 Hsp33 protein BEN53_RS20740 PF13687 Domain of unknown function (DUF4153) BEN53_RS20750 PF01293 Phosphoenolpyruvate carboxykinase BEN53_RS20765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS20765 PF00672 HAMP domain BEN53_RS20765 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS20770 PF00072 Response regulator receiver domain BEN53_RS20770 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS20780 PF03449 Transcription elongation factor, N-terminal BEN53_RS20780 PF01272 Transcription elongation factor, GreA/GreB, C-term BEN53_RS20785 PF16921 Tex protein YqgF-like domain BEN53_RS20785 PF09371 Tex-like protein N-terminal domain BEN53_RS20785 PF17674 HHH domain BEN53_RS20785 PF00575 S1 RNA binding domain BEN53_RS20795 PF04023 FeoA domain BEN53_RS20800 PF02421 Ferrous iron transport protein B BEN53_RS20800 PF07664 Ferrous iron transport protein B C terminus BEN53_RS20800 PF17910 FeoB cytosolic helical domain BEN53_RS20800 PF07670 Nucleoside recognition BEN53_RS20805 PF09012 FeoC like transcriptional regulator BEN53_RS20815 PF04754 Putative transposase, YhgA-like BEN53_RS20820 PF00561 alpha/beta hydrolase fold BEN53_RS20825 PF00156 Phosphoribosyl transferase domain BEN53_RS20830 PF01521 Iron-sulphur cluster biosynthesis BEN53_RS20830 PF01106 NifU-like domain BEN53_RS20835 PF02447 GntP family permease BEN53_RS20840 PF02446 4-alpha-glucanotransferase BEN53_RS20845 PF00343 Carbohydrate phosphorylase BEN53_RS20850 PF17874 MalT-like TPR region BEN53_RS20850 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS20855 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain BEN53_RS20855 PF01137 RNA 3'-terminal phosphate cyclase BEN53_RS20860 PF01139 tRNA-splicing ligase RtcB BEN53_RS20865 PF00158 Sigma-54 interaction domain BEN53_RS20865 PF06956 Regulator of RNA terminal phosphate cyclase BEN53_RS20870 PF08220 DeoR-like helix-turn-helix domain BEN53_RS20870 PF00455 DeoR C terminal sensor domain BEN53_RS20875 PF01694 Rhomboid family BEN53_RS20875 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease BEN53_RS20880 PF00581 Rhodanese-like domain BEN53_RS20885 PF01266 FAD dependent oxidoreductase BEN53_RS20885 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BEN53_RS20905 PF00343 Carbohydrate phosphorylase BEN53_RS20910 PF08323 Starch synthase catalytic domain BEN53_RS20910 PF00534 Glycosyl transferases group 1 BEN53_RS20915 PF00483 Nucleotidyl transferase BEN53_RS20920 PF00128 Alpha amylase, catalytic domain BEN53_RS20920 PF18390 Glycogen debranching enzyme C-terminal domain BEN53_RS20920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BEN53_RS20925 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BEN53_RS20925 PF02806 Alpha amylase, C-terminal all-beta domain BEN53_RS20925 PF00128 Alpha amylase, catalytic domain BEN53_RS20930 PF01118 Semialdehyde dehydrogenase, NAD binding domain BEN53_RS20930 PF02774 Semialdehyde dehydrogenase, dimerisation domain BEN53_RS20935 PF01914 MarC family integral membrane protein BEN53_RS20945 PF00271 Helicase conserved C-terminal domain BEN53_RS20945 PF09382 RQC domain BEN53_RS20945 PF00270 DEAD/DEAH box helicase BEN53_RS20945 PF00570 HRDC domain BEN53_RS20945 PF16124 RecQ zinc-binding BEN53_RS20950 PF02447 GntP family permease BEN53_RS20955 PF01202 Shikimate kinase BEN53_RS20960 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS20960 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BEN53_RS20965 PF02678 Pirin BEN53_RS20965 PF17954 Quercetinase C-terminal cupin domain BEN53_RS20970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BEN53_RS20970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BEN53_RS20980 PF00583 Acetyltransferase (GNAT) family BEN53_RS20985 PF05638 Type VI secretion system effector, Hcp BEN53_RS21010 PF10956 Protein of unknown function (DUF2756) BEN53_RS21015 PF03009 Glycerophosphoryl diester phosphodiesterase family BEN53_RS21020 PF00005 ABC transporter BEN53_RS21020 PF17912 MalK OB fold domain BEN53_RS21025 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS21030 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS21035 PF13416 Bacterial extracellular solute-binding protein BEN53_RS21040 PF00005 ABC transporter BEN53_RS21045 PF00005 ABC transporter BEN53_RS21045 PF12399 Branched-chain amino acid ATP-binding cassette transporter BEN53_RS21050 PF11862 Domain of unknown function (DUF3382) BEN53_RS21050 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS21055 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS21060 PF13458 Periplasmic binding protein BEN53_RS21065 PF12568 Acetyltransferase (GNAT) domain, PanZ BEN53_RS21070 PF13458 Periplasmic binding protein BEN53_RS21080 PF04542 Sigma-70 region 2 BEN53_RS21080 PF04545 Sigma-70, region 4 BEN53_RS21085 PF18075 FtsX extracellular domain BEN53_RS21085 PF02687 FtsX-like permease family BEN53_RS21090 PF00005 ABC transporter BEN53_RS21095 PF00448 SRP54-type protein, GTPase domain BEN53_RS21095 PF02881 SRP54-type protein, helical bundle domain BEN53_RS21105 PF06611 Protein of unknown function (DUF1145) BEN53_RS21110 PF10694 Protein of unknown function (DUF2500) BEN53_RS21115 PF07947 YhhN family BEN53_RS21120 PF00403 Heavy-metal-associated domain BEN53_RS21130 PF01206 Sulfurtransferase TusA BEN53_RS21135 PF02592 Putative vitamin uptake transporter BEN53_RS21140 PF08786 DcrB BEN53_RS21145 PF07690 Major Facilitator Superfamily BEN53_RS21150 PF01594 AI-2E family transporter BEN53_RS21155 PF01648 4'-phosphopantetheinyl transferase superfamily BEN53_RS21160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS21165 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS21170 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS21175 PF00005 ABC transporter BEN53_RS21180 PF00005 ABC transporter BEN53_RS21185 PF08753 NikR C terminal nickel binding domain BEN53_RS21185 PF01402 Ribbon-helix-helix protein, copG family BEN53_RS21205 PF00005 ABC transporter BEN53_RS21210 PF13533 Biotin-lipoyl like BEN53_RS21215 PF13258 Domain of unknown function (DUF4049) BEN53_RS21220 PF13258 Domain of unknown function (DUF4049) BEN53_RS21230 PF10951 Protein of unknown function (DUF2776) BEN53_RS21240 PF01384 Phosphate transporter family BEN53_RS21245 PF10625 Universal stress protein B (UspB) BEN53_RS21250 PF00582 Universal stress protein family BEN53_RS21260 PF00854 POT family BEN53_RS21265 PF04445 Putative SAM-dependent methyltransferase BEN53_RS21270 PF01432 Peptidase family M3 BEN53_RS21275 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BEN53_RS21280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEN53_RS21280 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS21295 PF01022 Bacterial regulatory protein, arsR family BEN53_RS21300 PF02040 Arsenical pump membrane protein BEN53_RS21305 PF03960 ArsC family BEN53_RS21325 PF03843 Outer membrane lipoprotein Slp family BEN53_RS21335 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS21340 PF05171 Haemin-degrading HemS.ChuX domain BEN53_RS21345 PF00593 TonB dependent receptor BEN53_RS21345 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS21365 PF04055 Radical SAM superfamily BEN53_RS21370 PF06228 Haem utilisation ChuX/HutX BEN53_RS21380 PF01032 FecCD transport family BEN53_RS21385 PF00005 ABC transporter BEN53_RS21390 PF02308 MgtC family BEN53_RS21395 PF06411 HdeA/HdeB family BEN53_RS21400 PF06411 HdeA/HdeB family BEN53_RS21405 PF03729 Short repeat of unknown function (DUF308) BEN53_RS21410 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS21420 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS21420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS21425 PF00873 AcrB/AcrD/AcrF family BEN53_RS21435 PF12833 Helix-turn-helix domain BEN53_RS21440 PF12833 Helix-turn-helix domain BEN53_RS21455 PF00282 Pyridoxal-dependent decarboxylase conserved domain BEN53_RS21460 PF14376 Haem-binding domain BEN53_RS21460 PF00034 Cytochrome c BEN53_RS21460 PF03150 Di-haem cytochrome c peroxidase BEN53_RS21465 PF01204 Trehalase BEN53_RS21470 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS21475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS21475 PF03466 LysR substrate binding domain BEN53_RS21480 PF03631 Virulence factor BrkB BEN53_RS21485 PF00083 Sugar (and other) transporter BEN53_RS21485 PF07690 Major Facilitator Superfamily BEN53_RS21490 PF05170 AsmA family BEN53_RS21495 PF00563 EAL domain BEN53_RS21505 PF00294 pfkB family carbohydrate kinase BEN53_RS21510 PF00675 Insulinase (Peptidase family M16) BEN53_RS21510 PF05193 Peptidase M16 inactive domain BEN53_RS21520 PF00375 Sodium:dicarboxylate symporter family BEN53_RS21530 PF00672 HAMP domain BEN53_RS21530 PF00990 Diguanylate cyclase, GGDEF domain BEN53_RS21530 PF17154 Gammaproteobacterial periplasmic sensor domain BEN53_RS21530 PF00563 EAL domain BEN53_RS21535 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) BEN53_RS21540 PF01270 Glycosyl hydrolases family 8 BEN53_RS21545 PF03170 Bacterial cellulose synthase subunit BEN53_RS21550 PF03552 Cellulose synthase BEN53_RS21550 PF00535 Glycosyl transferase family 2 BEN53_RS21550 PF07238 PilZ domain BEN53_RS21555 PF06564 Cellulose biosynthesis protein BcsQ BEN53_RS21560 PF10945 Cellulose biosynthesis protein BcsR BEN53_RS21565 PF10995 Cellulose biosynthesis GIL BEN53_RS21570 PF11120 Cellulose biosynthesis protein BcsF BEN53_RS21595 PF13940 Toxin Ldr, type I toxin-antitoxin system BEN53_RS21600 PF13940 Toxin Ldr, type I toxin-antitoxin system BEN53_RS21615 PF03222 Tryptophan/tyrosine permease family BEN53_RS21620 PF00005 ABC transporter BEN53_RS21620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN53_RS21625 PF00005 ABC transporter BEN53_RS21625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BEN53_RS21630 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS21630 PF12911 N-terminal TM domain of oligopeptide transport permease C BEN53_RS21635 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS21645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BEN53_RS21655 PF00884 Sulfatase BEN53_RS21655 PF08019 Phosphoethanolamine transferase EptA/EptB BEN53_RS21660 PF07690 Major Facilitator Superfamily BEN53_RS21670 PF03797 Autotransporter beta-domain BEN53_RS21675 PF03352 Methyladenine glycosylase BEN53_RS21680 PF00583 Acetyltransferase (GNAT) family BEN53_RS21685 PF01568 Molydopterin dinucleotide binding domain BEN53_RS21685 PF18364 Molybdopterin oxidoreductase N-terminal domain BEN53_RS21685 PF00384 Molybdopterin oxidoreductase BEN53_RS21690 PF00691 OmpA family BEN53_RS21690 PF13488 Glycine zipper BEN53_RS21695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BEN53_RS21695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BEN53_RS21700 PF11254 Protein of unknown function (DUF3053) BEN53_RS21705 PF01381 Helix-turn-helix BEN53_RS21710 PF00313 'Cold-shock' DNA-binding domain BEN53_RS21715 PF01848 Hok/gef family BEN53_RS21725 PF05746 DALR anticodon binding domain BEN53_RS21725 PF02092 Glycyl-tRNA synthetase beta subunit BEN53_RS21730 PF02091 Glycyl-tRNA synthetase alpha subunit BEN53_RS21735 PF13983 YsaB-like lipoprotein BEN53_RS21740 PF01757 Acyltransferase family BEN53_RS21745 PF05360 yiaA/B two helix domain BEN53_RS21750 PF05360 yiaA/B two helix domain BEN53_RS21755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN53_RS21755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN53_RS21765 PF13407 Periplasmic binding protein domain BEN53_RS21770 PF00005 ABC transporter BEN53_RS21775 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS21780 PF12833 Helix-turn-helix domain BEN53_RS21785 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BEN53_RS21790 PF00128 Alpha amylase, catalytic domain BEN53_RS21795 PF00155 Aminotransferase class I and II BEN53_RS21800 PF13247 4Fe-4S dicluster domain BEN53_RS21805 PF09339 IclR helix-turn-helix domain BEN53_RS21805 PF01614 Bacterial transcriptional regulator BEN53_RS21810 PF02615 Malate/L-lactate dehydrogenase BEN53_RS21815 PF04074 YhcH/YjgK/YiaL BEN53_RS21820 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BEN53_RS21825 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BEN53_RS21830 PF03480 Bacterial extracellular solute-binding protein, family 7 BEN53_RS21835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN53_RS21835 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN53_RS21840 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BEN53_RS21845 PF01261 Xylose isomerase-like TIM barrel BEN53_RS21850 PF00596 Class II Aldolase and Adducin N-terminal domain BEN53_RS21865 PF07944 Beta-L-arabinofuranosidase, GH127 BEN53_RS21870 PF01381 Helix-turn-helix BEN53_RS21870 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system BEN53_RS21890 PF00171 Aldehyde dehydrogenase family BEN53_RS21900 PF00465 Iron-containing alcohol dehydrogenase BEN53_RS21905 PF09107 Elongation factor SelB, winged helix BEN53_RS21905 PF00009 Elongation factor Tu GTP binding domain BEN53_RS21905 PF03144 Elongation factor Tu domain 2 BEN53_RS21905 PF09106 Elongation factor SelB, winged helix BEN53_RS21910 PF03841 L-seryl-tRNA selenium transferase BEN53_RS21910 PF12390 Selenocysteine synthase N terminal BEN53_RS21915 PF13417 Glutathione S-transferase, N-terminal domain BEN53_RS21915 PF00043 Glutathione S-transferase, C-terminal domain BEN53_RS21920 PF03797 Autotransporter beta-domain BEN53_RS21920 PF02395 Immunoglobulin A1 protease BEN53_RS21920 PF13018 Extended Signal Peptide of Type V secretion system BEN53_RS21940 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS21940 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS21945 PF00577 Outer membrane usher protein BEN53_RS21945 PF13954 PapC N-terminal domain BEN53_RS21960 PF12833 Helix-turn-helix domain BEN53_RS21965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BEN53_RS21965 PF00529 HlyD membrane-fusion protein of T1SS BEN53_RS21970 PF11742 Protein of unknown function (DUF3302) BEN53_RS21975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS21975 PF02378 Phosphotransferase system, EIIC BEN53_RS21975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS21980 PF01232 Mannitol dehydrogenase Rossmann domain BEN53_RS21980 PF08125 Mannitol dehydrogenase C-terminal domain BEN53_RS21985 PF05068 Mannitol repressor BEN53_RS21995 PF10928 Protein of unknown function (DUF2810) BEN53_RS22000 PF11622 Protein of unknown function (DUF3251) BEN53_RS22005 PF13018 Extended Signal Peptide of Type V secretion system BEN53_RS22005 PF03895 YadA-like membrane anchor domain BEN53_RS22005 PF05658 Head domain of trimeric autotransporter adhesin BEN53_RS22005 PF05662 Coiled stalk of trimeric autotransporter adhesin BEN53_RS22010 PF02652 L-lactate permease BEN53_RS22015 PF07729 FCD domain BEN53_RS22015 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS22020 PF01070 FMN-dependent dehydrogenase BEN53_RS22025 PF00588 SpoU rRNA Methylase family BEN53_RS22030 PF06426 Serine acetyltransferase, N-terminal BEN53_RS22030 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS22035 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BEN53_RS22035 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BEN53_RS22040 PF02556 Preprotein translocase subunit SecB BEN53_RS22045 PF00462 Glutaredoxin BEN53_RS22050 PF00581 Rhodanese-like domain BEN53_RS22060 PF01676 Metalloenzyme superfamily BEN53_RS22060 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BEN53_RS22065 PF01551 Peptidase family M23 BEN53_RS22070 PF04748 Divergent polysaccharide deacetylase BEN53_RS22075 PF00535 Glycosyl transferase family 2 BEN53_RS22080 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS22080 PF00107 Zinc-binding dehydrogenase BEN53_RS22085 PF00155 Aminotransferase class I and II BEN53_RS22090 PF01370 NAD dependent epimerase/dehydratase family BEN53_RS22095 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BEN53_RS22100 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BEN53_RS22105 PF04932 O-Antigen ligase BEN53_RS22110 PF00535 Glycosyl transferase family 2 BEN53_RS22115 PF01501 Glycosyl transferase family 8 BEN53_RS22115 PF08437 Glycosyl transferase family 8 C-terminal BEN53_RS22120 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) BEN53_RS22125 PF08437 Glycosyl transferase family 8 C-terminal BEN53_RS22125 PF01501 Glycosyl transferase family 8 BEN53_RS22130 PF08437 Glycosyl transferase family 8 C-terminal BEN53_RS22130 PF01501 Glycosyl transferase family 8 BEN53_RS22140 PF00534 Glycosyl transferases group 1 BEN53_RS22140 PF13439 Glycosyltransferase Family 4 BEN53_RS22145 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BEN53_RS22150 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BEN53_RS22155 PF01467 Cytidylyltransferase-like BEN53_RS22160 PF06827 Zinc finger found in FPG and IleRS BEN53_RS22160 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BEN53_RS22160 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BEN53_RS22165 PF00471 Ribosomal protein L33 BEN53_RS22170 PF00830 Ribosomal L28 family BEN53_RS22175 PF04002 RadC-like JAB domain BEN53_RS22180 PF02441 Flavoprotein BEN53_RS22180 PF04127 DNA / pantothenate metabolism flavoprotein BEN53_RS22185 PF00692 dUTPase BEN53_RS22190 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS22195 PF00156 Phosphoribosyl transferase domain BEN53_RS22200 PF01138 3' exoribonuclease family, domain 1 BEN53_RS22200 PF03725 3' exoribonuclease family, domain 2 BEN53_RS22210 PF08340 Domain of unknown function (DUF1732) BEN53_RS22210 PF03755 YicC-like family, N-terminal region BEN53_RS22325 PF06069 PerC transcriptional activator BEN53_RS22335 PF03458 UPF0126 domain BEN53_RS22340 PF01653 NAD-dependent DNA ligase adenylation domain BEN53_RS22340 PF03120 NAD-dependent DNA ligase OB-fold domain BEN53_RS22345 PF00625 Guanylate kinase BEN53_RS22350 PF01192 RNA polymerase Rpb6 BEN53_RS22355 PF04607 Region found in RelA / SpoT proteins BEN53_RS22355 PF13291 ACT domain BEN53_RS22355 PF02824 TGS domain BEN53_RS22360 PF00588 SpoU rRNA Methylase family BEN53_RS22360 PF12105 SpoU, rRNA methylase, C-terminal BEN53_RS22365 PF00270 DEAD/DEAH box helicase BEN53_RS22365 PF00271 Helicase conserved C-terminal domain BEN53_RS22365 PF17191 RecG wedge domain BEN53_RS22370 PF03616 Sodium/glutamate symporter BEN53_RS22375 PF00860 Permease family BEN53_RS22380 PF05170 AsmA family BEN53_RS22390 PF00480 ROK family BEN53_RS22395 PF01116 Fructose-bisphosphate aldolase class-II BEN53_RS22400 PF01116 Fructose-bisphosphate aldolase class-II BEN53_RS22405 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS22410 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS22415 PF02378 Phosphotransferase system, EIIC BEN53_RS22415 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS22415 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS22420 PF08279 HTH domain BEN53_RS22420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS22420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS22420 PF05043 Mga helix-turn-helix domain BEN53_RS22420 PF00874 PRD domain BEN53_RS22425 PF01055 Glycosyl hydrolases family 31 BEN53_RS22425 PF13802 Galactose mutarotase-like BEN53_RS22440 PF14659 Phage integrase, N-terminal SAM-like domain BEN53_RS22440 PF00589 Phage integrase family BEN53_RS22440 PF13356 Arm DNA-binding domain BEN53_RS22445 PF12833 Helix-turn-helix domain BEN53_RS22490 PF05853 beta-keto acid cleavage enzyme BEN53_RS22495 PF01261 Xylose isomerase-like TIM barrel BEN53_RS22500 PF08220 DeoR-like helix-turn-helix domain BEN53_RS22500 PF00455 DeoR C terminal sensor domain BEN53_RS22505 PF00596 Class II Aldolase and Adducin N-terminal domain BEN53_RS22510 PF17042 Nucleotide-binding C-terminal domain BEN53_RS22510 PF07005 Sugar-binding N-terminal domain BEN53_RS22530 PF13276 HTH-like domain BEN53_RS22530 PF00665 Integrase core domain BEN53_RS22530 PF01527 Transposase BEN53_RS22535 PF05717 IS66 Orf2 like protein BEN53_RS22540 PF03050 Transposase IS66 family BEN53_RS22540 PF13817 IS66 C-terminal element BEN53_RS22540 PF13007 Transposase C of IS166 homeodomain BEN53_RS22540 PF13005 zinc-finger binding domain of transposase IS66 BEN53_RS22550 PF08053 Tryptophanase operon leader peptide BEN53_RS22555 PF01212 Beta-eliminating lyase BEN53_RS22560 PF03222 Tryptophan/tyrosine permease family BEN53_RS22610 PF00294 pfkB family carbohydrate kinase BEN53_RS22615 PF07662 Na+ dependent nucleoside transporter C-terminus BEN53_RS22615 PF01773 Na+ dependent nucleoside transporter N-terminus BEN53_RS22620 PF04227 Indigoidine synthase A like protein BEN53_RS22625 PF00294 pfkB family carbohydrate kinase BEN53_RS22630 PF14602 Hexapeptide repeat of succinyl-transferase BEN53_RS22630 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS22630 PF12804 MobA-like NTP transferase domain BEN53_RS22660 PF01926 50S ribosome-binding GTPase BEN53_RS22665 PF08220 DeoR-like helix-turn-helix domain BEN53_RS22665 PF13280 WYL domain BEN53_RS22675 PF06006 Bacterial protein of unknown function (DUF905) BEN53_RS22680 PF06067 Domain of unknown function (DUF932) BEN53_RS22685 PF03230 Antirestriction protein BEN53_RS22690 PF04002 RadC-like JAB domain BEN53_RS22695 PF06174 Protein of unknown function (DUF987) BEN53_RS22700 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A BEN53_RS22705 PF06755 CbtA_toxin of type IV toxin-antitoxin system BEN53_RS22735 PF07690 Major Facilitator Superfamily BEN53_RS22740 PF00892 EamA-like transporter family BEN53_RS22745 PF03180 NLPA lipoprotein BEN53_RS22755 PF07720 Tetratricopeptide repeat BEN53_RS22775 PF06511 Type III secretion systems tip complex components BEN53_RS22780 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS22785 PF09134 Invasin, domain 3 BEN53_RS22785 PF11924 Inverse autotransporter, beta-domain BEN53_RS22785 PF02369 Bacterial Ig-like domain (group 1) BEN53_RS22790 PF07690 Major Facilitator Superfamily BEN53_RS22810 PF06711 Protein of unknown function (DUF1198) BEN53_RS22815 PF00860 Permease family BEN53_RS22820 PF13382 Adenine deaminase C-terminal domain BEN53_RS22820 PF01979 Amidohydrolase family BEN53_RS22825 PF07690 Major Facilitator Superfamily BEN53_RS22830 PF07690 Major Facilitator Superfamily BEN53_RS22835 PF07730 Histidine kinase BEN53_RS22835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS22835 PF05231 MASE1 BEN53_RS22840 PF00196 Bacterial regulatory proteins, luxR family BEN53_RS22840 PF00072 Response regulator receiver domain BEN53_RS22855 PF01842 ACT domain BEN53_RS22860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN53_RS22860 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN53_RS22860 PF00205 Thiamine pyrophosphate enzyme, central domain BEN53_RS22865 PF08049 IlvB leader peptide BEN53_RS22885 PF13939 Toxin TisB, type I toxin-antitoxin system BEN53_RS22895 PF07690 Major Facilitator Superfamily BEN53_RS22905 PF02656 Domain of unknown function (DUF202) BEN53_RS22910 PF02656 Domain of unknown function (DUF202) BEN53_RS22915 PF16347 Domain of unknown function (DUF4976) BEN53_RS22915 PF00884 Sulfatase BEN53_RS22920 PF00474 Sodium:solute symporter family BEN53_RS22925 PF12833 Helix-turn-helix domain BEN53_RS22925 PF02311 AraC-like ligand binding domain BEN53_RS22930 PF02056 Family 4 glycosyl hydrolase BEN53_RS22930 PF11975 Family 4 glycosyl hydrolase C-terminal domain BEN53_RS22935 PF02378 Phosphotransferase system, EIIC BEN53_RS22935 PF00367 phosphotransferase system, EIIB BEN53_RS22940 PF07702 UTRA domain BEN53_RS22940 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS22945 PF02080 TrkA-C domain BEN53_RS22945 PF06826 Predicted Permease Membrane Region BEN53_RS22950 PF00011 Hsp20/alpha crystallin family BEN53_RS22955 PF00011 Hsp20/alpha crystallin family BEN53_RS22960 PF07119 Protein of unknown function (DUF1375) BEN53_RS22965 PF07676 WD40-like Beta Propeller Repeat BEN53_RS22965 PF12566 Protein of unknown function (DUF3748) BEN53_RS22970 PF01494 FAD binding domain BEN53_RS22975 PF07690 Major Facilitator Superfamily BEN53_RS22980 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN53_RS22980 PF13378 Enolase C-terminal domain-like BEN53_RS22985 PF01081 KDPG and KHG aldolase BEN53_RS22990 PF05035 2-keto-3-deoxy-galactonokinase BEN53_RS22995 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS22995 PF07729 FCD domain BEN53_RS23010 PF06078 Bacterial protein of unknown function (DUF937) BEN53_RS23015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS23015 PF01751 Toprim domain BEN53_RS23015 PF00204 DNA gyrase B BEN53_RS23015 PF00986 DNA gyrase B subunit, carboxyl terminus BEN53_RS23015 PF18053 DNA gyrase B subunit insert domain BEN53_RS23020 PF02463 RecF/RecN/SMC N terminal domain BEN53_RS23025 PF02768 DNA polymerase III beta subunit, C-terminal domain BEN53_RS23025 PF00712 DNA polymerase III beta subunit, N-terminal domain BEN53_RS23025 PF02767 DNA polymerase III beta subunit, central domain BEN53_RS23030 PF11638 DnaA N-terminal domain BEN53_RS23030 PF08299 Bacterial dnaA protein helix-turn-helix BEN53_RS23030 PF00308 Bacterial dnaA protein BEN53_RS23040 PF00468 Ribosomal protein L34 BEN53_RS23045 PF00825 Ribonuclease P BEN53_RS23050 PF01809 Putative membrane protein insertion efficiency factor BEN53_RS23055 PF14849 YidC periplasmic domain BEN53_RS23055 PF02096 60Kd inner membrane protein BEN53_RS23060 PF10396 GTP-binding protein TrmE N-terminus BEN53_RS23060 PF12631 MnmE helical domain BEN53_RS23060 PF01926 50S ribosome-binding GTPase BEN53_RS23065 PF08053 Tryptophanase operon leader peptide BEN53_RS23070 PF01212 Beta-eliminating lyase BEN53_RS23075 PF03222 Tryptophan/tyrosine permease family BEN53_RS23080 PF07690 Major Facilitator Superfamily BEN53_RS23085 PF03466 LysR substrate binding domain BEN53_RS23085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS23095 PF03358 NADPH-dependent FMN reductase BEN53_RS23100 PF00860 Permease family BEN53_RS23105 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS23145 PF01895 PhoU domain BEN53_RS23150 PF00005 ABC transporter BEN53_RS23155 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS23160 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS23165 PF12849 PBP superfamily domain BEN53_RS23175 PF00577 Outer membrane usher protein BEN53_RS23175 PF13954 PapC N-terminal domain BEN53_RS23175 PF13953 PapC C-terminal domain BEN53_RS23180 PF02753 Pili assembly chaperone PapD, C-terminal domain BEN53_RS23180 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BEN53_RS23185 PF00419 Fimbrial protein BEN53_RS23190 PF01380 SIS domain BEN53_RS23195 PF00132 Bacterial transferase hexapeptide (six repeats) BEN53_RS23195 PF14602 Hexapeptide repeat of succinyl-transferase BEN53_RS23195 PF12804 MobA-like NTP transferase domain BEN53_RS23200 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BEN53_RS23200 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BEN53_RS23205 PF02874 ATP synthase alpha/beta family, beta-barrel domain BEN53_RS23205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEN53_RS23210 PF00231 ATP synthase BEN53_RS23215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEN53_RS23215 PF00306 ATP synthase alpha/beta chain, C terminal domain BEN53_RS23215 PF02874 ATP synthase alpha/beta family, beta-barrel domain BEN53_RS23220 PF00213 ATP synthase delta (OSCP) subunit BEN53_RS23225 PF00430 ATP synthase B/B' CF(0) BEN53_RS23230 PF00137 ATP synthase subunit C BEN53_RS23235 PF00119 ATP synthase A chain BEN53_RS23240 PF03899 ATP synthase I chain BEN53_RS23245 PF02527 rRNA small subunit methyltransferase G BEN53_RS23250 PF13932 GidA associated domain BEN53_RS23250 PF01134 Glucose inhibited division protein A BEN53_RS23255 PF00258 Flavodoxin BEN53_RS23260 PF01037 Lrp/AsnC ligand binding domain BEN53_RS23265 PF03590 Aspartate-ammonia ligase BEN53_RS23270 PF05762 VWA domain containing CoxE-like protein BEN53_RS23275 PF07728 AAA domain (dynein-related subfamily) BEN53_RS23275 PF17868 AAA lid domain BEN53_RS23275 PF12592 Protein of unknown function (DUF3763) BEN53_RS23280 PF02705 K+ potassium transporter BEN53_RS23285 PF05025 RbsD / FucU transport protein family BEN53_RS23290 PF00005 ABC transporter BEN53_RS23295 PF02653 Branched-chain amino acid transport system / permease component BEN53_RS23300 PF13407 Periplasmic binding protein domain BEN53_RS23305 PF00294 pfkB family carbohydrate kinase BEN53_RS23310 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS23315 PF07690 Major Facilitator Superfamily BEN53_RS23320 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS23320 PF07729 FCD domain BEN53_RS23355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS23355 PF03466 LysR substrate binding domain BEN53_RS23360 PF04219 Protein of unknown function, DUF BEN53_RS23365 PF01078 Magnesium chelatase, subunit ChlI BEN53_RS23365 PF13335 Magnesium chelatase, subunit ChlI C-terminal BEN53_RS23375 PF08046 IlvGEDA operon leader peptide BEN53_RS23385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BEN53_RS23385 PF00205 Thiamine pyrophosphate enzyme, central domain BEN53_RS23385 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BEN53_RS23395 PF01063 Amino-transferase class IV BEN53_RS23400 PF00920 Dehydratase family BEN53_RS23405 PF00291 Pyridoxal-phosphate dependent enzyme BEN53_RS23405 PF00585 C-terminal regulatory domain of Threonine dehydratase BEN53_RS23410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS23410 PF03466 LysR substrate binding domain BEN53_RS23415 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BEN53_RS23415 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BEN53_RS23425 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BEN53_RS23430 PF00580 UvrD/REP helicase N-terminal domain BEN53_RS23430 PF13361 UvrD-like helicase C-terminal domain BEN53_RS23435 PF02541 Ppx/GppA phosphatase family BEN53_RS23445 PF00271 Helicase conserved C-terminal domain BEN53_RS23445 PF00270 DEAD/DEAH box helicase BEN53_RS23450 PF00085 Thioredoxin BEN53_RS23460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BEN53_RS23460 PF07498 Rho termination factor, N-terminal domain BEN53_RS23460 PF07497 Rho termination factor, RNA-binding domain BEN53_RS23470 PF00953 Glycosyl transferase family 4 BEN53_RS23475 PF02706 Chain length determinant protein BEN53_RS23480 PF02350 UDP-N-acetylglucosamine 2-epimerase BEN53_RS23485 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BEN53_RS23485 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BEN53_RS23485 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BEN53_RS23490 PF16363 GDP-mannose 4,6 dehydratase BEN53_RS23495 PF00483 Nucleotidyl transferase BEN53_RS23505 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BEN53_RS23510 PF01943 Polysaccharide biosynthesis protein BEN53_RS23515 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 BEN53_RS23520 PF06899 WzyE protein, O-antigen assembly polymerase BEN53_RS23525 PF03808 Glycosyl transferase WecB/TagA/CpsF family BEN53_RS23530 PF00324 Amino acid permease BEN53_RS23555 PF13186 Iron-sulfur cluster-binding domain BEN53_RS23555 PF04055 Radical SAM superfamily BEN53_RS23560 PF00884 Sulfatase BEN53_RS23565 PF07219 HemY protein N-terminus BEN53_RS23565 PF07719 Tetratricopeptide repeat BEN53_RS23570 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase BEN53_RS23575 PF02602 Uroporphyrinogen-III synthase HemD BEN53_RS23580 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BEN53_RS23580 PF03900 Porphobilinogen deaminase, C-terminal domain BEN53_RS23590 PF01295 Adenylate cyclase, class-I BEN53_RS23590 PF12633 Adenylate cyclase NT domain BEN53_RS23595 PF01491 Frataxin-like domain BEN53_RS23620 PF13627 Prokaryotic lipoprotein-attachment site BEN53_RS23625 PF01678 Diaminopimelate epimerase BEN53_RS23630 PF04340 Protein of unknown function, DUF484 BEN53_RS23635 PF02899 Phage integrase, N-terminal SAM-like domain BEN53_RS23635 PF00589 Phage integrase family BEN53_RS23640 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS23645 PF13361 UvrD-like helicase C-terminal domain BEN53_RS23645 PF00580 UvrD/REP helicase N-terminal domain BEN53_RS23650 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase BEN53_RS23655 PF09992 Phosphodiester glycosidase BEN53_RS23660 PF01544 CorA-like Mg2+ transporter protein BEN53_RS23675 PF00892 EamA-like transporter family BEN53_RS23680 PF03061 Thioesterase superfamily BEN53_RS23685 PF02253 Phospholipase A1 BEN53_RS23690 PF16124 RecQ zinc-binding BEN53_RS23690 PF00570 HRDC domain BEN53_RS23690 PF00270 DEAD/DEAH box helicase BEN53_RS23690 PF09382 RQC domain BEN53_RS23690 PF00271 Helicase conserved C-terminal domain BEN53_RS23695 PF01810 LysE type translocator BEN53_RS23700 PF01810 LysE type translocator BEN53_RS23705 PF12146 Serine aminopeptidase, S33 BEN53_RS23715 PF00892 EamA-like transporter family BEN53_RS23720 PF03466 LysR substrate binding domain BEN53_RS23720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS23725 PF01717 Cobalamin-independent synthase, Catalytic domain BEN53_RS23725 PF08267 Cobalamin-independent synthase, N-terminal domain BEN53_RS23730 PF03466 LysR substrate binding domain BEN53_RS23730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS23735 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin BEN53_RS23745 PF00696 Amino acid kinase family BEN53_RS23750 PF06545 Protein of unknown function (DUF1116) BEN53_RS23755 PF02629 CoA binding domain BEN53_RS23755 PF00549 CoA-ligase BEN53_RS23765 PF00857 Isochorismatase family BEN53_RS23770 PF01738 Dienelactone hydrolase family BEN53_RS23775 PF01048 Phosphorylase superfamily BEN53_RS23790 PF03401 Tripartite tricarboxylate transporter family receptor BEN53_RS23795 PF01081 KDPG and KHG aldolase BEN53_RS23800 PF05035 2-keto-3-deoxy-galactonokinase BEN53_RS23805 PF09339 IclR helix-turn-helix domain BEN53_RS23805 PF01614 Bacterial transcriptional regulator BEN53_RS23810 PF02646 RmuC family BEN53_RS23815 PF01209 ubiE/COQ5 methyltransferase family BEN53_RS23820 PF02036 SCP-2 sterol transfer family BEN53_RS23825 PF03109 ABC1 family BEN53_RS23830 PF02416 mttA/Hcf106 family BEN53_RS23840 PF00902 Sec-independent protein translocase protein (TatC) BEN53_RS23845 PF01026 TatD related DNase BEN53_RS23850 PF02357 Transcription termination factor nusG BEN53_RS23855 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BEN53_RS23860 PF00175 Oxidoreductase NAD-binding domain BEN53_RS23860 PF00970 Oxidoreductase FAD-binding domain BEN53_RS23865 PF02803 Thiolase, C-terminal domain BEN53_RS23865 PF00108 Thiolase, N-terminal domain BEN53_RS23870 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BEN53_RS23870 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BEN53_RS23870 PF00378 Enoyl-CoA hydratase/isomerase BEN53_RS23875 PF00557 Metallopeptidase family M24 BEN53_RS23880 PF01205 Uncharacterized protein family UPF0029 BEN53_RS23880 PF09186 Domain of unknown function (DUF1949) BEN53_RS23885 PF02386 Cation transport protein BEN53_RS23890 PF12724 Flavodoxin domain BEN53_RS23920 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BEN53_RS23925 PF12804 MobA-like NTP transferase domain BEN53_RS23930 PF06288 Protein of unknown function (DUF1040) BEN53_RS23935 PF01636 Phosphotransferase enzyme family BEN53_RS23940 PF01323 DSBA-like thioredoxin domain BEN53_RS23945 PF06097 Bacterial protein of unknown function (DUF945) BEN53_RS23950 PF01553 Acyltransferase BEN53_RS23960 PF01367 5'-3' exonuclease, C-terminal SAM fold BEN53_RS23960 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BEN53_RS23960 PF01612 3'-5' exonuclease BEN53_RS23960 PF00476 DNA polymerase family A BEN53_RS23965 PF01926 50S ribosome-binding GTPase BEN53_RS23970 PF04220 Der GTPase activator (YihI) BEN53_RS23975 PF04055 Radical SAM superfamily BEN53_RS23975 PF06969 HemN C-terminal domain BEN53_RS23985 PF00072 Response regulator receiver domain BEN53_RS23985 PF00158 Sigma-54 interaction domain BEN53_RS23985 PF02954 Bacterial regulatory protein, Fis family BEN53_RS23990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS23990 PF00989 PAS fold BEN53_RS23990 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS23995 PF00120 Glutamine synthetase, catalytic domain BEN53_RS23995 PF03951 Glutamine synthetase, beta-Grasp domain BEN53_RS24005 PF03144 Elongation factor Tu domain 2 BEN53_RS24005 PF00009 Elongation factor Tu GTP binding domain BEN53_RS24005 PF00679 Elongation factor G C-terminus BEN53_RS24010 PF01609 Transposase DDE domain BEN53_RS24010 PF13006 Insertion element 4 transposase N-terminal BEN53_RS24015 PF07702 UTRA domain BEN53_RS24015 PF00392 Bacterial regulatory proteins, gntR family BEN53_RS24020 PF01261 Xylose isomerase-like TIM barrel BEN53_RS24025 PF07690 Major Facilitator Superfamily BEN53_RS24030 PF06178 Oligogalacturonate-specific porin protein (KdgM) BEN53_RS24045 PF01055 Glycosyl hydrolases family 31 BEN53_RS24050 PF01263 Aldose 1-epimerase BEN53_RS24060 PF01791 DeoC/LacD family aldolase BEN53_RS24065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BEN53_RS24065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BEN53_RS24070 PF00294 pfkB family carbohydrate kinase BEN53_RS24075 PF00455 DeoR C terminal sensor domain BEN53_RS24075 PF08220 DeoR-like helix-turn-helix domain BEN53_RS24080 PF13419 Haloacid dehalogenase-like hydrolase BEN53_RS24085 PF03631 Virulence factor BrkB BEN53_RS24090 PF02580 D-Tyr-tRNA(Tyr) deacylase BEN53_RS24095 PF00583 Acetyltransferase (GNAT) family BEN53_RS24095 PF09500 Putative thioesterase (yiiD_Cterm) BEN53_RS24115 PF01402 Ribbon-helix-helix protein, copG family BEN53_RS24130 PF04216 Protein involved in formate dehydrogenase formation BEN53_RS24135 PF01292 Prokaryotic cytochrome b561 BEN53_RS24140 PF13247 4Fe-4S dicluster domain BEN53_RS24140 PF09163 Formate dehydrogenase N, transmembrane BEN53_RS24155 PF02634 FdhD/NarQ family BEN53_RS24160 PF00183 Hsp90 protein BEN53_RS24160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS24170 PF12889 Protein of unknown function (DUF3829) BEN53_RS24175 PF08279 HTH domain BEN53_RS24175 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS24180 PF05343 M42 glutamyl aminopeptidase BEN53_RS24185 PF02378 Phosphotransferase system, EIIC BEN53_RS24185 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS24190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS24200 PF05336 L-rhamnose mutarotase BEN53_RS24205 PF00596 Class II Aldolase and Adducin N-terminal domain BEN53_RS24210 PF06134 L-rhamnose isomerase (RhaA) BEN53_RS24215 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN53_RS24215 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN53_RS24220 PF12833 Helix-turn-helix domain BEN53_RS24220 PF02311 AraC-like ligand binding domain BEN53_RS24225 PF12833 Helix-turn-helix domain BEN53_RS24225 PF02311 AraC-like ligand binding domain BEN53_RS24230 PF06379 L-rhamnose-proton symport protein (RhaT) BEN53_RS24235 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BEN53_RS24235 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BEN53_RS24245 PF03812 2-keto-3-deoxygluconate permease BEN53_RS24250 PF03475 3-alpha domain BEN53_RS24250 PF03473 MOSC domain BEN53_RS24255 PF01548 Transposase BEN53_RS24255 PF02371 Transposase IS116/IS110/IS902 family BEN53_RS24265 PF16527 Two-component sensor protein CpxA, periplasmic domain BEN53_RS24265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS24265 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS24265 PF00672 HAMP domain BEN53_RS24270 PF00072 Response regulator receiver domain BEN53_RS24270 PF00486 Transcriptional regulatory protein, C terminal BEN53_RS24275 PF07813 LTXXQ motif family protein BEN53_RS24280 PF01545 Cation efflux family BEN53_RS24280 PF16916 Dimerisation domain of Zinc Transporter BEN53_RS24285 PF00365 Phosphofructokinase BEN53_RS24295 PF02611 CDP-diacylglycerol pyrophosphatase BEN53_RS24300 PF00121 Triosephosphate isomerase BEN53_RS24305 PF07305 Protein of unknown function (DUF1454) BEN53_RS24310 PF05656 Protein of unknown function (DUF805) BEN53_RS24315 PF04175 Protein of unknown function (DUF406) BEN53_RS24320 PF00582 Universal stress protein family BEN53_RS24325 PF00970 Oxidoreductase FAD-binding domain BEN53_RS24325 PF00175 Oxidoreductase NAD-binding domain BEN53_RS24330 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BEN53_RS24335 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BEN53_RS24335 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BEN53_RS24340 PF00230 Major intrinsic protein BEN53_RS24345 PF06005 Cell division protein ZapB BEN53_RS24360 PF03737 Aldolase/RraA BEN53_RS24365 PF01040 UbiA prenyltransferase family BEN53_RS24370 PF00004 ATPase family associated with various cellular activities (AAA) BEN53_RS24370 PF07724 AAA domain (Cdc48 subfamily) BEN53_RS24370 PF10431 C-terminal, D2-small domain, of ClpB protein BEN53_RS24375 PF00227 Proteasome subunit BEN53_RS24380 PF05036 Sporulation related domain BEN53_RS24385 PF00356 Bacterial regulatory proteins, lacI family BEN53_RS24390 PF00270 DEAD/DEAH box helicase BEN53_RS24390 PF00271 Helicase conserved C-terminal domain BEN53_RS24390 PF17764 3′ DNA-binding domain (3′BD) BEN53_RS24390 PF18074 Primosomal protein N C-terminal domain BEN53_RS24390 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BEN53_RS24395 PF01197 Ribosomal protein L31 BEN53_RS24400 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family BEN53_RS24405 PF01340 Met Apo-repressor, MetJ BEN53_RS24410 PF01053 Cys/Met metabolism PLP-dependent enzyme BEN53_RS24415 PF03447 Homoserine dehydrogenase, NAD binding domain BEN53_RS24415 PF00742 Homoserine dehydrogenase BEN53_RS24415 PF00696 Amino acid kinase family BEN53_RS24420 PF03502 Nucleoside-specific channel-forming protein, Tsx BEN53_RS24425 PF00149 Calcineurin-like phosphoesterase BEN53_RS24425 PF02872 5'-nucleotidase, C-terminal domain BEN53_RS24430 PF00149 Calcineurin-like phosphoesterase BEN53_RS24430 PF02872 5'-nucleotidase, C-terminal domain BEN53_RS24440 PF00149 Calcineurin-like phosphoesterase BEN53_RS24440 PF02872 5'-nucleotidase, C-terminal domain BEN53_RS24445 PF02219 Methylenetetrahydrofolate reductase BEN53_RS24450 PF00141 Peroxidase BEN53_RS24455 PF00892 EamA-like transporter family BEN53_RS24460 PF06940 Domain of unknown function (DUF1287) BEN53_RS24465 PF00465 Iron-containing alcohol dehydrogenase BEN53_RS24470 PF00923 Transaldolase/Fructose-6-phosphate aldolase BEN53_RS24475 PF02896 PEP-utilising enzyme, TIM barrel domain BEN53_RS24475 PF00391 PEP-utilising enzyme, mobile domain BEN53_RS24475 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BEN53_RS24475 PF00381 PTS HPr component phosphorylation site BEN53_RS24475 PF05524 PEP-utilising enzyme, N-terminal BEN53_RS24485 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS24490 PF01228 Glycine radical BEN53_RS24490 PF02901 Pyruvate formate lyase-like BEN53_RS24495 PF04055 Radical SAM superfamily BEN53_RS24500 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BEN53_RS24505 PF12833 Helix-turn-helix domain BEN53_RS24510 PF00884 Sulfatase BEN53_RS24515 PF00311 Phosphoenolpyruvate carboxylase BEN53_RS24520 PF01546 Peptidase family M20/M25/M40 BEN53_RS24520 PF07687 Peptidase dimerisation domain BEN53_RS24525 PF01118 Semialdehyde dehydrogenase, NAD binding domain BEN53_RS24525 PF02774 Semialdehyde dehydrogenase, dimerisation domain BEN53_RS24530 PF00696 Amino acid kinase family BEN53_RS24535 PF00206 Lyase BEN53_RS24535 PF14698 Argininosuccinate lyase C-terminal BEN53_RS24540 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BEN53_RS24540 PF13378 Enolase C-terminal domain-like BEN53_RS24545 PF07690 Major Facilitator Superfamily BEN53_RS24550 PF03466 LysR substrate binding domain BEN53_RS24550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS24555 PF07992 Pyridine nucleotide-disulphide oxidoreductase BEN53_RS24555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BEN53_RS24565 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS24570 PF07226 Protein of unknown function (DUF1422) BEN53_RS24575 PF05958 tRNA (Uracil-5-)-methyltransferase BEN53_RS24580 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS24580 PF00593 TonB dependent receptor BEN53_RS24585 PF01177 Asp/Glu/Hydantoin racemase BEN53_RS24610 PF01565 FAD binding domain BEN53_RS24610 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BEN53_RS24615 PF08279 HTH domain BEN53_RS24615 PF02237 Biotin protein ligase C terminal domain BEN53_RS24615 PF03099 Biotin/lipoate A/B protein ligase family BEN53_RS24620 PF00485 Phosphoribulokinase / Uridine kinase family BEN53_RS24655 PF00009 Elongation factor Tu GTP binding domain BEN53_RS24655 PF03144 Elongation factor Tu domain 2 BEN53_RS24655 PF03143 Elongation factor Tu C-terminal domain BEN53_RS24660 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BEN53_RS24665 PF02357 Transcription termination factor nusG BEN53_RS24665 PF00467 KOW motif BEN53_RS24670 PF00298 Ribosomal protein L11, RNA binding domain BEN53_RS24670 PF03946 Ribosomal protein L11, N-terminal domain BEN53_RS24675 PF00687 Ribosomal protein L1p/L10e family BEN53_RS24685 PF00466 Ribosomal protein L10 BEN53_RS24690 PF00542 Ribosomal protein L7/L12 C-terminal domain BEN53_RS24690 PF16320 Ribosomal protein L7/L12 dimerisation domain BEN53_RS24695 PF04565 RNA polymerase Rpb2, domain 3 BEN53_RS24695 PF04561 RNA polymerase Rpb2, domain 2 BEN53_RS24695 PF04563 RNA polymerase beta subunit BEN53_RS24695 PF00562 RNA polymerase Rpb2, domain 6 BEN53_RS24695 PF04560 RNA polymerase Rpb2, domain 7 BEN53_RS24695 PF10385 RNA polymerase beta subunit external 1 domain BEN53_RS24700 PF05000 RNA polymerase Rpb1, domain 4 BEN53_RS24700 PF04997 RNA polymerase Rpb1, domain 1 BEN53_RS24700 PF00623 RNA polymerase Rpb1, domain 2 BEN53_RS24700 PF04983 RNA polymerase Rpb1, domain 3 BEN53_RS24700 PF04998 RNA polymerase Rpb1, domain 5 BEN53_RS24705 PF00294 pfkB family carbohydrate kinase BEN53_RS24725 PF06968 Biotin and Thiamin Synthesis associated domain BEN53_RS24725 PF04055 Radical SAM superfamily BEN53_RS24730 PF05690 Thiazole biosynthesis protein ThiG BEN53_RS24735 PF02597 ThiS family BEN53_RS24740 PF00899 ThiF family BEN53_RS24745 PF02581 Thiamine monophosphate synthase BEN53_RS24750 PF13667 ThiC-associated domain BEN53_RS24750 PF01964 Radical SAM ThiC family BEN53_RS24755 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BEN53_RS24760 PF00293 NUDIX domain BEN53_RS24760 PF09297 NADH pyrophosphatase zinc ribbon domain BEN53_RS24765 PF01208 Uroporphyrinogen decarboxylase (URO-D) BEN53_RS24770 PF04493 Endonuclease V BEN53_RS24775 PF04222 Protein of unknown function (DUF416) BEN53_RS24780 PF00216 Bacterial DNA-binding protein BEN53_RS24785 PF07356 Protein of unknown function (DUF1481) BEN53_RS24790 PF13801 Heavy-metal resistance BEN53_RS24800 PF00512 His Kinase A (phospho-acceptor) domain BEN53_RS24800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BEN53_RS24805 PF02954 Bacterial regulatory protein, Fis family BEN53_RS24805 PF00072 Response regulator receiver domain BEN53_RS24805 PF00158 Sigma-54 interaction domain BEN53_RS24810 PF02844 Phosphoribosylglycinamide synthetase, N domain BEN53_RS24810 PF02843 Phosphoribosylglycinamide synthetase, C domain BEN53_RS24810 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BEN53_RS24815 PF01808 AICARFT/IMPCHase bienzyme BEN53_RS24815 PF02142 MGS-like domain BEN53_RS24845 PF13673 Acetyltransferase (GNAT) domain BEN53_RS24850 PF04204 Homoserine O-succinyltransferase BEN53_RS24855 PF01274 Malate synthase BEN53_RS24860 PF00463 Isocitrate lyase family BEN53_RS24865 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BEN53_RS24870 PF09339 IclR helix-turn-helix domain BEN53_RS24870 PF01614 Bacterial transcriptional regulator BEN53_RS24875 PF02607 B12 binding domain BEN53_RS24875 PF02310 B12 binding domain BEN53_RS24875 PF02574 Homocysteine S-methyltransferase BEN53_RS24875 PF00809 Pterin binding enzyme BEN53_RS24875 PF02965 Vitamin B12 dependent methionine synthase, activation domain BEN53_RS24890 PF02690 Na+/Pi-cotransporter BEN53_RS24895 PF03575 Peptidase family S51 BEN53_RS24900 PF08501 Shikimate dehydrogenase substrate binding domain BEN53_RS24905 PF00107 Zinc-binding dehydrogenase BEN53_RS24905 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS24910 PF03613 PTS system mannose/fructose/sorbose family IID component BEN53_RS24915 PF03609 PTS system sorbose-specific iic component BEN53_RS24920 PF03830 PTS system sorbose subfamily IIB component BEN53_RS24925 PF03610 PTS system fructose IIA component BEN53_RS24930 PF00106 short chain dehydrogenase BEN53_RS24935 PF13936 Helix-turn-helix domain BEN53_RS24935 PF04198 Putative sugar-binding domain BEN53_RS24940 PF00849 RNA pseudouridylate synthase BEN53_RS24940 PF01479 S4 domain BEN53_RS24945 PF11656 YjbD family (DUF3811) BEN53_RS24955 PF10127 RNA repair pathway DNA polymerase beta family BEN53_RS24970 PF07484 Phage Tail Collar Domain BEN53_RS24970 PF03335 Phage tail fibre repeat BEN53_RS25050 PF01464 Transglycosylase SLT domain BEN53_RS25050 PF14718 Soluble lytic murein transglycosylase L domain BEN53_RS25060 PF08765 Mor transcription activator family BEN53_RS25065 PF00696 Amino acid kinase family BEN53_RS25065 PF01842 ACT domain BEN53_RS25080 PF00342 Phosphoglucose isomerase BEN53_RS25085 PF11106 Exopolysaccharide production protein YjbE BEN53_RS25090 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF BEN53_RS25095 PF06251 Capsule biosynthesis GfcC BEN53_RS25100 PF06082 Exopolysaccharide biosynthesis protein YbjH BEN53_RS25105 PF17089 Uncharacterised protein family BEN53_RS25110 PF06146 Phosphate-starvation-inducible E BEN53_RS25115 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS25120 PF14785 Maltose transport system permease protein MalF P2 domain BEN53_RS25120 PF00528 Binding-protein-dependent transport system inner membrane component BEN53_RS25125 PF01547 Bacterial extracellular solute-binding protein BEN53_RS25135 PF00005 ABC transporter BEN53_RS25135 PF17912 MalK OB fold domain BEN53_RS25140 PF02264 LamB porin BEN53_RS25145 PF07148 Maltose operon periplasmic protein precursor (MalM) BEN53_RS25150 PF13981 SopA-like central domain BEN53_RS25150 PF13599 Pentapeptide repeats (9 copies) BEN53_RS25160 PF04345 Chorismate lyase BEN53_RS25165 PF01040 UbiA prenyltransferase family BEN53_RS25170 PF01553 Acyltransferase BEN53_RS25175 PF01219 Prokaryotic diacylglycerol kinase BEN53_RS25180 PF00717 Peptidase S24-like BEN53_RS25180 PF01726 LexA DNA binding domain BEN53_RS25185 PF01554 MatE BEN53_RS25190 PF05532 CsbD-like BEN53_RS25195 PF01475 Ferric uptake regulator family BEN53_RS25200 PF10897 Protein of unknown function (DUF2713) BEN53_RS25205 PF01207 Dihydrouridine synthase (Dus) BEN53_RS25210 PF09583 Phage shock protein G (Phageshock_PspG) BEN53_RS25215 PF08240 Alcohol dehydrogenase GroES-like domain BEN53_RS25215 PF00107 Zinc-binding dehydrogenase BEN53_RS25220 PF00772 DnaB-like helicase N terminal domain BEN53_RS25220 PF03796 DnaB-like helicase C terminal domain BEN53_RS25225 PF01168 Alanine racemase, N-terminal domain BEN53_RS25225 PF00842 Alanine racemase, C-terminal domain BEN53_RS25230 PF00155 Aminotransferase class I and II BEN53_RS25240 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BEN53_RS25245 PF01894 Uncharacterised protein family UPF0047 BEN53_RS25250 PF04237 YjbR BEN53_RS25255 PF17760 UvrA interaction domain BEN53_RS25255 PF00005 ABC transporter BEN53_RS25255 PF17755 UvrA DNA-binding domain BEN53_RS25265 PF00436 Single-strand binding protein family BEN53_RS25270 PF15940 Family of unknown function BEN53_RS25280 PF00563 EAL domain BEN53_RS25280 PF12792 CSS motif domain associated with EAL BEN53_RS25285 PF12833 Helix-turn-helix domain BEN53_RS25290 PF09278 MerR, DNA binding BEN53_RS25290 PF00376 MerR family regulatory protein BEN53_RS25310 PF00860 Permease family BEN53_RS25315 PF00999 Sodium/hydrogen exchanger family BEN53_RS25320 PF00474 Sodium:solute symporter family BEN53_RS25325 PF04341 Protein of unknown function, DUF485 BEN53_RS25330 PF00501 AMP-binding enzyme BEN53_RS25330 PF16177 Acetyl-coenzyme A synthetase N-terminus BEN53_RS25330 PF13193 AMP-binding enzyme C-terminal domain BEN53_RS25340 PF02335 Cytochrome c552 BEN53_RS25345 PF13435 Cytochrome c554 and c-prime BEN53_RS25345 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) BEN53_RS25350 PF13247 4Fe-4S dicluster domain BEN53_RS25350 PF00037 4Fe-4S binding domain BEN53_RS25355 PF03916 Polysulphide reductase, NrfD BEN53_RS25360 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BEN53_RS25360 PF01578 Cytochrome C assembly protein BEN53_RS25365 PF03358 NADPH-dependent FMN reductase BEN53_RS25370 PF13610 DDE domain BEN53_RS25385 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS25385 PF02909 Tetracyclin repressor-like, C-terminal domain BEN53_RS25390 PF07690 Major Facilitator Superfamily BEN53_RS25395 PF00892 EamA-like transporter family BEN53_RS25415 PF02909 Tetracyclin repressor-like, C-terminal domain BEN53_RS25415 PF00440 Bacterial regulatory proteins, tetR family BEN53_RS25420 PF07690 Major Facilitator Superfamily BEN53_RS25425 PF00892 EamA-like transporter family BEN53_RS25440 PF13610 DDE domain BEN53_RS25455 PF13495 Phage integrase, N-terminal SAM-like domain BEN53_RS25455 PF00589 Phage integrase family BEN53_RS25460 PF00186 Dihydrofolate reductase BEN53_RS25465 PF13610 DDE domain BEN53_RS25480 PF01526 Tn3 transposase DDE domain BEN53_RS25480 PF13700 Domain of unknown function (DUF4158) BEN53_RS25485 PF01548 Transposase BEN53_RS25485 PF02371 Transposase IS116/IS110/IS902 family BEN53_RS25500 PF00809 Pterin binding enzyme BEN53_RS25505 PF01636 Phosphotransferase enzyme family BEN53_RS25510 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase BEN53_RS25525 PF02796 Helix-turn-helix domain of resolvase BEN53_RS25525 PF00239 Resolvase, N terminal domain BEN53_RS25535 PF13610 DDE domain BEN53_RS25580 PF13614 AAA domain BEN53_RS25610 PF06406 StbA protein BEN53_RS25640 PF10502 Signal peptidase, peptidase S26 BEN53_RS25650 PF06834 TraU protein BEN53_RS25665 PF13361 UvrD-like helicase C-terminal domain BEN53_RS25665 PF00580 UvrD/REP helicase N-terminal domain BEN53_RS25775 PF00665 Integrase core domain BEN53_RS25775 PF13936 Helix-turn-helix domain BEN53_RS25780 PF00884 Sulfatase BEN53_RS25780 PF08019 Phosphoethanolamine transferase EptA/EptB BEN53_RS25800 PF05321 Haemolysin expression modulating protein BEN53_RS25820 PF00092 von Willebrand factor type A domain BEN53_RS25825 PF00092 von Willebrand factor type A domain BEN53_RS25830 PF02342 TerD domain BEN53_RS25855 PF15608 PELOTA RNA binding domain BEN53_RS25855 PF11202 Phosphoribosyl transferase (PRTase) BEN53_RS25875 PF02342 TerD domain BEN53_RS25880 PF02342 TerD domain BEN53_RS25885 PF05099 Tellurite resistance protein TerB BEN53_RS25890 PF03741 Integral membrane protein TerC family BEN53_RS25895 PF02342 TerD domain BEN53_RS25900 PF02342 TerD domain BEN53_RS25910 PF02342 TerD domain BEN53_RS25945 PF07804 HipA-like C-terminal domain BEN53_RS25945 PF13657 HipA N-terminal domain BEN53_RS25990 PF01526 Tn3 transposase DDE domain BEN53_RS25990 PF13700 Domain of unknown function (DUF4158) BEN53_RS26020 PF13610 DDE domain BEN53_RS26025 PF01051 Initiator Replication protein BEN53_RS26035 PF02371 Transposase IS116/IS110/IS902 family BEN53_RS26035 PF01548 Transposase BEN53_RS26050 PF13610 DDE domain BEN53_RS26060 PF01636 Phosphotransferase enzyme family BEN53_RS26085 PF13610 DDE domain BEN53_RS26095 PF13610 DDE domain BEN53_RS26135 PF00145 C-5 cytosine-specific DNA methylase BEN53_RS26135 PF18284 DNA methylase N-terminal domain BEN53_RS26140 PF00565 Staphylococcal nuclease homologue BEN53_RS26195 PF13610 DDE domain BEN53_RS26210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BEN53_RS26230 PF13610 DDE domain BEN53_RS26235 PF02522 Aminoglycoside 3-N-acetyltransferase BEN53_RS26245 PF01636 Phosphotransferase enzyme family BEN53_RS26255 PF13610 DDE domain BEN53_RS26270 PF02332 Methane/Phenol/Toluene Hydroxylase BEN53_RS26290 PF00809 Pterin binding enzyme BEN53_RS26295 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BEN53_RS26295 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BEN53_RS26295 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BEN53_RS26295 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BEN53_RS26310 PF03466 LysR substrate binding domain BEN53_RS26310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS26315 PF07690 Major Facilitator Superfamily BEN53_RS26330 PF03466 LysR substrate binding domain BEN53_RS26330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BEN53_RS26335 PF07690 Major Facilitator Superfamily BEN53_RS26350 PF13610 DDE domain BEN53_RS26360 PF13610 DDE domain BEN53_RS26385 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system BEN53_RS26390 PF02517 CPBP intramembrane metalloprotease BEN53_RS26400 PF02387 IncFII RepA protein family BEN53_RS26410 PF08048 Tap RepA1 leader peptide BEN53_RS26420 PF10723 Replication regulatory protein RepB BEN53_RS26425 PF01848 Hok/gef family BEN53_RS26440 PF04352 ProQ/FINO family BEN53_RS26440 PF12602 Fertility inhibition protein N terminal BEN53_RS26445 PF00561 alpha/beta hydrolase fold BEN53_RS26450 PF05857 TraX protein BEN53_RS26455 PF18272 single-stranded DNA binding TraI N-terminal subdomain BEN53_RS26455 PF18340 DNA relaxase TraI 2B/2B-like domain BEN53_RS26455 PF08751 TrwC relaxase BEN53_RS26455 PF07057 DNA helicase TraI BEN53_RS26460 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BEN53_RS26465 PF01850 PIN domain BEN53_RS26470 PF10412 Type IV secretion-system coupling protein DNA-binding domain BEN53_RS26470 PF12615 F sex factor protein N terminal BEN53_RS26475 PF05818 Enterobacterial TraT complement resistance protein BEN53_RS26485 PF07916 TraG-like protein, N-terminal region BEN53_RS26490 PF06122 Conjugative relaxosome accessory transposon protein BEN53_RS26505 PF13728 F plasmid transfer operon protein BEN53_RS26510 PF09679 Type-F conjugative transfer system pilin chaperone (TraQ) BEN53_RS26525 PF13728 F plasmid transfer operon protein BEN53_RS26530 PF11100 Conjugal transfer protein TrbE BEN53_RS26535 PF06986 Type-1V conjugative transfer system mating pair stabilisation BEN53_RS26540 PF09673 Type-F conjugative transfer system pilin assembly protein BEN53_RS26545 PF06834 TraU protein BEN53_RS26550 PF12477 Sex factor F TraW protein N terminal BEN53_RS26555 PF09677 Type-F conjugative transfer system protein (TrbI_Ftype) BEN53_RS26560 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer BEN53_RS26565 PF01258 Prokaryotic dksA/traR C4-type zinc finger BEN53_RS26570 PF09676 Type IV conjugative transfer system lipoprotein (TraV) BEN53_RS26580 PF10894 Protein of unknown function (DUF2689) BEN53_RS26585 PF07296 TraP protein BEN53_RS26590 PF03743 Bacterial conjugation TrbI-like protein BEN53_RS26595 PF06586 TraK protein BEN53_RS26600 PF05309 TraE protein BEN53_RS26605 PF07178 TraL protein BEN53_RS26610 PF05513 TraA BEN53_RS26615 PF05509 TraY domain BEN53_RS26625 PF05261 TraM protein, DNA-binding BEN53_RS26630 PF01464 Transglycosylase SLT domain BEN53_RS26635 PF06067 Domain of unknown function (DUF932) BEN53_RS26660 PF01848 Hok/gef family BEN53_RS26665 PF06952 PsiA protein BEN53_RS26670 PF06290 Plasmid SOS inhibition protein (PsiB) BEN53_RS26680 PF06006 Bacterial protein of unknown function (DUF905) BEN53_RS26685 PF00436 Single-strand binding protein family BEN53_RS26695 PF07339 Protein of unknown function (DUF1472) BEN53_RS26710 PF02195 ParB-like nuclease domain BEN53_RS26710 PF18090 Centromere-binding protein HTH domain BEN53_RS26715 PF13614 AAA domain BEN53_RS26735 PF00593 TonB dependent receptor BEN53_RS26735 PF07715 TonB-dependent Receptor Plug Domain BEN53_RS26740 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BEN53_RS26745 PF06276 Ferric iron reductase FhuF-like transporter BEN53_RS26745 PF04183 IucA / IucC family BEN53_RS26755 PF06276 Ferric iron reductase FhuF-like transporter BEN53_RS26755 PF04183 IucA / IucC family BEN53_RS26765 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BEN53_RS26785 PF00950 ABC 3 transport family BEN53_RS26790 PF00950 ABC 3 transport family BEN53_RS26795 PF00005 ABC transporter BEN53_RS26800 PF01297 Zinc-uptake complex component A periplasmic BEN53_RS26840 PF01051 Initiator Replication protein BEN53_RS26845 PF00589 Phage integrase family BEN53_RS26870 PF01278 Omptin family BEN53_RS26910 PF17508 Microcin V bacteriocin BEN53_RS26935 PF00665 Integrase core domain BEN53_RS26935 PF13936 Helix-turn-helix domain BEN53_RS26950 PF14859 Colicin M BEN53_RS26955 PF13995 YebF-like protein BEN53_RS26960 PF00589 Phage integrase family BEN53_RS26980 PF07693 KAP family P-loop domain BEN53_RS26985 PF10137 Predicted nucleotide-binding protein containing TIR-like domain BEN53_RS27000 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin BEN53_RS27005 PF01850 PIN domain