EC55989_RS00050	SM00852	Probable molybdopterin binding domain
EC55989_RS00075	SM00271	DnaJ molecular chaperone homology domain
EC55989_RS00120	SM00904	Riboflavin kinase
EC55989_RS00165	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
EC55989_RS00170	SM00851	MGS-like domain
EC55989_RS00170	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
EC55989_RS00215	SM00893	Electron transfer flavoprotein domain
EC55989_RS00220	SM00893	Electron transfer flavoprotein domain
EC55989_RS00265	SM00650	Ribosomal RNA adenine dimethylases
EC55989_RS00285	SM00271	DnaJ molecular chaperone homology domain
EC55989_RS00295	SM00487	DEAD-like helicases superfamily
EC55989_RS00295	SM00490	helicase superfamily c-terminal domain
EC55989_RS00300	SM00486	DNA polymerase type-B family
EC55989_RS00305	SM01007	Class II Aldolase and Adducin N-terminal domain
EC55989_RS00320	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS00330	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS00370	SM01329	EC55989_RS00370
EC55989_RS00375	SM00917	LeuA allosteric (dimerisation) domain
EC55989_RS00405	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS00475	SM00842	Cell division protein FtsA
EC55989_RS00480	SM00864	Tubulin/FtsZ family, GTPase domain
EC55989_RS00480	SM00865	Tubulin/FtsZ family, C-terminal domain
EC55989_RS00495	SM00957	SecA DEAD-like domain
EC55989_RS00495	SM00958	SecA preprotein cross-linking domain
EC55989_RS00525	SM01240	EC55989_RS00525
EC55989_RS00555	SM00644	EC55989_RS00555
EC55989_RS00570	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS00570	SM00895	EC55989_RS00570
EC55989_RS00625	SM00564	beta-propeller repeat
EC55989_RS00635	SM00947	Carbonic anhydrase
EC55989_RS00640	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS00745	SM00487	DEAD-like helicases superfamily
EC55989_RS00745	SM00490	helicase superfamily c-terminal domain
EC55989_RS00745	SM00847	Helicase associated domain (HA2)  Add an annotation
EC55989_RS00765	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS00810	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EC55989_RS00815	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EC55989_RS00835	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EC55989_RS00880	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EC55989_RS00890	SM00935	Outer membrane protein (OmpH-like)
EC55989_RS00920	SM00481	DNA polymerase alpha chain like domain
EC55989_RS00940	SM00977	TilS substrate C-terminal domain
EC55989_RS00955	SM01322	EC55989_RS00955
EC55989_RS01010	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS01010	SM00930	EC55989_RS01010
EC55989_RS01075	SM00257	Lysin motif
EC55989_RS01080	SM00849	Metallo-beta-lactamase superfamily
EC55989_RS01095	SM00479	EC55989_RS01095
EC55989_RS01145	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS01145	SM01086	C-terminal, D2-small domain, of ClpB protein
EC55989_RS01355	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
EC55989_RS01425	SM00945	ProQ/FINO family
EC55989_RS01485	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
EC55989_RS01490	SM01092	CO dehydrogenase flavoprotein C-terminal domain
EC55989_RS01535	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS01560	SM00634	Bacterial Ig-like domain (group 1)
EC55989_RS01565	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS01565	SM00871	Bacterial transcription activator, effector binding domain
EC55989_RS01585	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS01635	SM00869	Autotransporter beta-domain
EC55989_RS01640	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS01640	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS01655	SM00248	ankyrin repeats
EC55989_RS01685	SM01022	EC55989_RS01685
EC55989_RS01695	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS01710	SM00829	Enoylreductase
EC55989_RS01735	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS01780	SM00947	Carbonic anhydrase
EC55989_RS01785	SM01116	EC55989_RS01785
EC55989_RS01795	SM01266	EC55989_RS01795
EC55989_RS01805	SM01038	Beta galactosidase small chain
EC55989_RS01815	SM00346	helix_turn_helix isocitrate lyase regulation
EC55989_RS01840	SM00859	Semialdehyde dehydrogenase, NAD binding domain
EC55989_RS01870	SM00829	Enoylreductase
EC55989_RS01900	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS01905	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS01920	SM01004	Delta-aminolevulinic acid dehydratase
EC55989_RS01925	SM00869	Autotransporter beta-domain
EC55989_RS01995	SM00098	Alkaline phosphatase homologues
EC55989_RS02005	SM00267	diguanylate cyclase
EC55989_RS02075	SM00448	cheY-homologous receiver domain
EC55989_RS02075	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS02080	SM00091	PAS domain
EC55989_RS02080	SM00387	Histidine kinase-like ATPases
EC55989_RS02080	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS02095	SM00642	Alpha-amylase domain
EC55989_RS02115	SM01323	EC55989_RS02115
EC55989_RS02130	SM00507	HNH nucleases
EC55989_RS02185	SM00861	Transketolase, pyrimidine binding domain
EC55989_RS02200	SM00981	EC55989_RS02200
EC55989_RS02225	SM00671	Sel1-like repeats.
EC55989_RS02295	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS02295	SM00994	ClpX C4-type zinc finger
EC55989_RS02295	SM01086	C-terminal, D2-small domain, of ClpB protein
EC55989_RS02300	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS02300	SM00464	Found in ATP-dependent protease La (LON)
EC55989_RS02305	SM00411	bacterial (prokaryotic) histone like domain
EC55989_RS02315	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EC55989_RS02340	SM00344	helix_turn_helix ASNC type
EC55989_RS02345	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS02350	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS02355	SM00938	Nitrogen regulatory protein P-II
EC55989_RS02385	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS02395	SM01266	EC55989_RS02395
EC55989_RS02455	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS02465	SM00493	EC55989_RS02465
EC55989_RS02470	SM00387	Histidine kinase-like ATPases
EC55989_RS02520	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS02540	SM00422	helix_turn_helix, mercury resistance
EC55989_RS02550	SM00244	prohibitin homologues
EC55989_RS02555	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS02570	SM00822	EC55989_RS02570
EC55989_RS02580	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS02625	SM00450	Rhodanese Homology Domain
EC55989_RS02640	SM00346	helix_turn_helix isocitrate lyase regulation
EC55989_RS02720	SM01001	AIR carboxylase
EC55989_RS02735	SM00840	EC55989_RS02735
EC55989_RS02780	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS02780	SM00448	cheY-homologous receiver domain
EC55989_RS02790	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS02800	SM00028	Tetratricopeptide repeats
EC55989_RS02840	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS02840	SM00387	Histidine kinase-like ATPases
EC55989_RS02840	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS02845	SM00448	cheY-homologous receiver domain
EC55989_RS02845	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS02935	SM00923	MbtH-like protein
EC55989_RS02940	SM00823	Phosphopantetheine attachment site
EC55989_RS02940	SM00824	Thioesterase
EC55989_RS02950	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS02990	SM00822	EC55989_RS02990
EC55989_RS03020	SM00470	ParB-like nuclease domain
EC55989_RS03105	SM00764	Citrate lyase ligase C-terminal domain
EC55989_RS03110	SM00091	PAS domain
EC55989_RS03110	SM00387	Histidine kinase-like ATPases
EC55989_RS03115	SM00448	cheY-homologous receiver domain
EC55989_RS03130	SM00357	Cold shock protein domain
EC55989_RS03150	SM00729	Elongator protein 3, MiaB family, Radical SAM
EC55989_RS03175	SM00936	Penicillin-binding protein 5, C-terminal domain 
EC55989_RS03205	SM00855	Phosphoglycerate mutase family
EC55989_RS03235	SM00671	Sel1-like repeats.
EC55989_RS03245	SM00271	DnaJ molecular chaperone homology domain
EC55989_RS03250	SM00671	Sel1-like repeats.
EC55989_RS03280	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS03295	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS03310	SM00116	Domain in cystathionine beta-synthase and other proteins.
EC55989_RS03310	SM01091	Transporter associated domain
EC55989_RS03325	SM00729	Elongator protein 3, MiaB family, Radical SAM
EC55989_RS03470	SM00448	cheY-homologous receiver domain
EC55989_RS03470	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS03475	SM00387	Histidine kinase-like ATPases
EC55989_RS03475	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS03555	SM00796	Allophanate hydrolase subunit 1
EC55989_RS03560	SM00797	Allophanate hydrolase subunit 2
EC55989_RS03570	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
EC55989_RS03570	SM01232	EC55989_RS03570
EC55989_RS03635	SM00861	Transketolase, pyrimidine binding domain
EC55989_RS03650	SM00881	CoA binding domain
EC55989_RS03655	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS03655	SM00866	EC55989_RS03655
EC55989_RS03665	SM00872	Alpha mannosidase, middle domain
EC55989_RS03795	SM00855	Phosphoglycerate mutase family
EC55989_RS03820	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS03845	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS03955	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS03995	SM00857	Resolvase, N terminal domain
EC55989_RS04060	SM01252	EC55989_RS04060
EC55989_RS04150	SM00635	Bacterial Ig-like domain 2
EC55989_RS04180	SM00232	JAB/MPN domain
EC55989_RS04190	SM00060	Fibronectin type 3 domain
EC55989_RS04220	SM00267	diguanylate cyclase
EC55989_RS04235	SM00729	Elongator protein 3, MiaB family, Radical SAM
EC55989_RS04235	SM00876	Biotin and Thiamin Synthesis associated domain
EC55989_RS04255	SM00487	DEAD-like helicases superfamily
EC55989_RS04255	SM00490	helicase superfamily c-terminal domain
EC55989_RS04270	SM00729	Elongator protein 3, MiaB family, Radical SAM
EC55989_RS04275	SM00852	Probable molybdopterin binding domain
EC55989_RS04315	SM00155	Phospholipase D. Active site motifs.
EC55989_RS04340	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04355	SM00487	DEAD-like helicases superfamily
EC55989_RS04355	SM00490	helicase superfamily c-terminal domain
EC55989_RS04365	SM00487	DEAD-like helicases superfamily
EC55989_RS04365	SM00488	EC55989_RS04365
EC55989_RS04365	SM00491	EC55989_RS04365
EC55989_RS04390	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
EC55989_RS04420	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04430	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS04430	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EC55989_RS04465	SM00529	Helix-turn-helix diphteria tox regulatory element
EC55989_RS04480	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04520	SM00852	Probable molybdopterin binding domain
EC55989_RS04530	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04550	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS04555	SM00267	diguanylate cyclase
EC55989_RS04560	SM00729	Elongator protein 3, MiaB family, Radical SAM
EC55989_RS04580	SM00936	Penicillin-binding protein 5, C-terminal domain 
EC55989_RS04585	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS04585	SM01134	EC55989_RS04585
EC55989_RS04590	SM00014	Acid phosphatase homologues
EC55989_RS04665	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04690	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS04690	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EC55989_RS04705	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS04705	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EC55989_RS04710	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04725	SM00644	EC55989_RS04725
EC55989_RS04790	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04795	SM00357	Cold shock protein domain
EC55989_RS04805	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04805	SM01086	C-terminal, D2-small domain, of ClpB protein
EC55989_RS04815	SM00316	Ribosomal protein S1-like RNA-binding domain
EC55989_RS04825	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04830	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04840	SM00344	helix_turn_helix ASNC type
EC55989_RS04845	SM00843	EC55989_RS04845
EC55989_RS04855	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS04865	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS04950	SM00316	Ribosomal protein S1-like RNA-binding domain
EC55989_RS04955	SM00411	bacterial (prokaryotic) histone like domain
EC55989_RS04960	SM00849	Metallo-beta-lactamase superfamily
EC55989_RS04965	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS05030	SM00849	Metallo-beta-lactamase superfamily
EC55989_RS05070	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS05085	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS05145	SM00981	EC55989_RS05145
EC55989_RS05150	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS05225	SM00851	MGS-like domain
EC55989_RS05240	SM00881	CoA binding domain
EC55989_RS05245	SM00992	Hemimethylated DNA-binding protein YccV like
EC55989_RS05250	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
EC55989_RS05310	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS05395	SM00507	HNH nucleases
EC55989_RS05535	SM00635	Bacterial Ig-like domain 2
EC55989_RS05565	SM00232	JAB/MPN domain
EC55989_RS05655	SM00226	Low molecular weight phosphatase family
EC55989_RS05685	SM00357	Cold shock protein domain
EC55989_RS05695	SM00357	Cold shock protein domain
EC55989_RS05715	SM00073	Histidine Phosphotransfer domain
EC55989_RS05715	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS05715	SM00387	Histidine kinase-like ATPases
EC55989_RS05715	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS05715	SM00448	cheY-homologous receiver domain
EC55989_RS05725	SM00448	cheY-homologous receiver domain
EC55989_RS05725	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS05750	SM00271	DnaJ molecular chaperone homology domain
EC55989_RS05790	SM00903	Flavin reductase like domain
EC55989_RS05885	SM00028	Tetratricopeptide repeats
EC55989_RS05940	SM00481	DNA polymerase alpha chain like domain
EC55989_RS05970	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS06000	SM00506	Appr-1"-p processing enzyme
EC55989_RS06005	SM00155	Phospholipase D. Active site motifs.
EC55989_RS06060	SM00450	Rhodanese Homology Domain
EC55989_RS06065	SM00867	YceI-like domain 
EC55989_RS06145	SM00858	EC55989_RS06145
EC55989_RS06190	SM00047	Lysozyme subfamily 2
EC55989_RS06205	SM00316	Ribosomal protein S1-like RNA-binding domain
EC55989_RS06215	SM00363	S4 RNA-binding domain
EC55989_RS06245	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
EC55989_RS06250	SM00822	EC55989_RS06250
EC55989_RS06260	SM00825	Beta-ketoacyl synthase
EC55989_RS06350	SM00257	Lysin motif
EC55989_RS06355	SM00487	DEAD-like helicases superfamily
EC55989_RS06355	SM00490	helicase superfamily c-terminal domain
EC55989_RS06355	SM00982	EC55989_RS06355
EC55989_RS06355	SM01058	CarD-like/TRCF domain
EC55989_RS06370	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS06415	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS06430	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
EC55989_RS06435	SM00387	Histidine kinase-like ATPases
EC55989_RS06440	SM00448	cheY-homologous receiver domain
EC55989_RS06440	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS06470	SM01329	EC55989_RS06470
EC55989_RS06490	SM00422	helix_turn_helix, mercury resistance
EC55989_RS06495	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS06495	SM01034	Sensors of blue-light using FAD
EC55989_RS06520	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS06545	SM00869	Autotransporter beta-domain
EC55989_RS06640	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS06655	SM01005	Alanine racemase, C-terminal domain
EC55989_RS06660	SM01091	Transporter associated domain
EC55989_RS06700	SM01120	EC55989_RS06700
EC55989_RS06710	SM00091	PAS domain
EC55989_RS06710	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS06715	SM00869	Autotransporter beta-domain
EC55989_RS06745	SM01400	EC55989_RS06745
EC55989_RS06765	SM00937	EC55989_RS06765
EC55989_RS06825	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS06825	SM00448	cheY-homologous receiver domain
EC55989_RS06830	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS06830	SM00387	Histidine kinase-like ATPases
EC55989_RS06845	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS06895	SM00448	cheY-homologous receiver domain
EC55989_RS06905	SM00528	Domain in histone-like proteins of HNS family
EC55989_RS06950	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS06955	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS06965	SM00155	Phospholipase D. Active site motifs.
EC55989_RS07060	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS07120	SM00507	HNH nucleases
EC55989_RS07135	SM00220	Serine/Threonine protein kinases, catalytic domain
EC55989_RS07250	SM00635	Bacterial Ig-like domain 2
EC55989_RS07370	SM00481	DNA polymerase alpha chain like domain
EC55989_RS07380	SM00363	S4 RNA-binding domain
EC55989_RS07390	SM00822	EC55989_RS07390
EC55989_RS07415	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
EC55989_RS07415	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
EC55989_RS07415	SM00493	EC55989_RS07415
EC55989_RS07450	SM00014	Acid phosphatase homologues
EC55989_RS07460	SM00028	Tetratricopeptide repeats
EC55989_RS07465	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
EC55989_RS07480	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS07480	SM01134	EC55989_RS07480
EC55989_RS07490	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS07490	SM00091	PAS domain
EC55989_RS07490	SM00267	diguanylate cyclase
EC55989_RS07500	SM00357	Cold shock protein domain
EC55989_RS07500	SM00955	EC55989_RS07500
EC55989_RS07525	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS07530	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS07565	SM01230	EC55989_RS07565
EC55989_RS07575	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS07595	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS07620	SM00450	Rhodanese Homology Domain
EC55989_RS07625	SM00642	Alpha-amylase domain
EC55989_RS07670	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS07680	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS07695	SM00091	PAS domain
EC55989_RS07695	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS07705	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EC55989_RS07755	SM00100	Cyclic nucleotide-monophosphate binding domain
EC55989_RS07755	SM00419	helix_turn_helix, cAMP Regulatory protein
EC55989_RS07790	SM00463	Small MutS-related domain
EC55989_RS07795	SM00091	PAS domain
EC55989_RS07795	SM00267	diguanylate cyclase
EC55989_RS07810	SM00487	DEAD-like helicases superfamily
EC55989_RS07810	SM00490	helicase superfamily c-terminal domain
EC55989_RS07830	SM00890	Domain of unknown function
EC55989_RS07865	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS07975	SM00195	Dual specificity phosphatase, catalytic domain
EC55989_RS07975	SM00404	Protein tyrosine phosphatase, catalytic domain motif
EC55989_RS07985	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS07985	SM00487	DEAD-like helicases superfamily
EC55989_RS07985	SM00490	helicase superfamily c-terminal domain
EC55989_RS07985	SM00847	Helicase associated domain (HA2)  Add an annotation
EC55989_RS08000	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
EC55989_RS08020	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EC55989_RS08020	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS08020	SM00319	Homologues of the ligand binding domain of Tar
EC55989_RS08030	SM01150	EC55989_RS08030
EC55989_RS08090	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS08110	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS08115	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS08125	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS08175	SM00829	Enoylreductase
EC55989_RS08180	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS08180	SM00895	EC55989_RS08180
EC55989_RS08235	SM00903	Flavin reductase like domain
EC55989_RS08265	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS08290	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS08310	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS08315	SM00829	Enoylreductase
EC55989_RS08320	SM00919	Malic enzyme, NAD binding domain
EC55989_RS08320	SM01274	EC55989_RS08320
EC55989_RS08340	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS08345	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS08370	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS08370	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
EC55989_RS08370	SM00091	PAS domain
EC55989_RS08370	SM00267	diguanylate cyclase
EC55989_RS08375	SM00267	diguanylate cyclase
EC55989_RS08405	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS08420	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS08475	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS08480	SM00869	Autotransporter beta-domain
EC55989_RS08495	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS08515	SM01133	EC55989_RS08515
EC55989_RS08540	SM00267	diguanylate cyclase
EC55989_RS08585	SM00347	helix_turn_helix multiple antibiotic resistance protein
EC55989_RS08590	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS08625	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS08625	SM00866	EC55989_RS08625
EC55989_RS08650	SM00267	diguanylate cyclase
EC55989_RS08675	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS08675	SM00895	EC55989_RS08675
EC55989_RS08745	SM00060	Fibronectin type 3 domain
EC55989_RS08755	SM00232	JAB/MPN domain
EC55989_RS08785	SM00635	Bacterial Ig-like domain 2
EC55989_RS08910	SM00507	HNH nucleases
EC55989_RS08955	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS09010	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EC55989_RS09040	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS09045	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS09125	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
EC55989_RS09125	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
EC55989_RS09150	SM00448	cheY-homologous receiver domain
EC55989_RS09150	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS09155	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS09155	SM00387	Histidine kinase-like ATPases
EC55989_RS09155	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS09210	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS09270	SM00900	EC55989_RS09270
EC55989_RS09280	SM00478	endonuclease III
EC55989_RS09280	SM00525	EC55989_RS09280
EC55989_RS09305	SM00363	S4 RNA-binding domain
EC55989_RS09330	SM00347	helix_turn_helix multiple antibiotic resistance protein
EC55989_RS09380	SM00479	EC55989_RS09380
EC55989_RS09385	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS09385	SM00487	DEAD-like helicases superfamily
EC55989_RS09385	SM00490	helicase superfamily c-terminal domain
EC55989_RS09415	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS09490	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
EC55989_RS09515	SM00257	Lysin motif
EC55989_RS09535	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS09595	SM00882	Coenzyme A transferase
EC55989_RS09605	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS09615	SM00893	Electron transfer flavoprotein domain
EC55989_RS09620	SM00893	Electron transfer flavoprotein domain
EC55989_RS09680	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS09695	SM00411	bacterial (prokaryotic) histone like domain
EC55989_RS09700	SM00873	B3/4 domain
EC55989_RS09700	SM00874	tRNA synthetase B5 domain
EC55989_RS09700	SM00896	Ferredoxin-fold anticodon binding domain
EC55989_RS09730	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
EC55989_RS09805	SM01060	EC55989_RS09805
EC55989_RS09820	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS09855	SM00465	GIY-YIG type nucleases (URI domain)
EC55989_RS09930	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS09935	SM00450	Rhodanese Homology Domain
EC55989_RS09955	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
EC55989_RS09965	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
EC55989_RS09965	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
EC55989_RS09965	SM00493	EC55989_RS09965
EC55989_RS09995	SM00870	EC55989_RS09995
EC55989_RS10010	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS10010	SM01134	EC55989_RS10010
EC55989_RS10055	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
EC55989_RS10075	SM00763	PrkA AAA domain
EC55989_RS10085	SM00267	diguanylate cyclase
EC55989_RS10090	SM00267	diguanylate cyclase
EC55989_RS10110	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS10130	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EC55989_RS10130	SM00267	diguanylate cyclase
EC55989_RS10175	SM01329	EC55989_RS10175
EC55989_RS10195	SM00341	Helicase and RNase D C-terminal
EC55989_RS10195	SM00474	3'-5' exonuclease
EC55989_RS10215	SM00487	DEAD-like helicases superfamily
EC55989_RS10215	SM00491	EC55989_RS10215
EC55989_RS10250	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS10255	SM01091	Transporter associated domain
EC55989_RS10300	SM00357	Cold shock protein domain
EC55989_RS10340	SM00346	helix_turn_helix isocitrate lyase regulation
EC55989_RS10355	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EC55989_RS10355	SM00245	tail specific protease
EC55989_RS10360	SM00945	ProQ/FINO family
EC55989_RS10365	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EC55989_RS10430	SM00479	EC55989_RS10430
EC55989_RS10500	SM00257	Lysin motif
EC55989_RS10510	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS10520	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS10525	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EC55989_RS10600	SM00836	DALR anticodon binding domain
EC55989_RS10600	SM01016	Arginyl tRNA synthetase N terminal dom
EC55989_RS10630	SM00448	cheY-homologous receiver domain
EC55989_RS10635	SM00448	cheY-homologous receiver domain
EC55989_RS10640	SM00138	Methyltransferase, chemotaxis proteins 
EC55989_RS10645	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EC55989_RS10645	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS10645	SM00319	Homologues of the ligand binding domain of Tar
EC55989_RS10650	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EC55989_RS10650	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS10650	SM00319	Homologues of the ligand binding domain of Tar
EC55989_RS10655	SM00260	Two component signalling adaptor domain
EC55989_RS10660	SM00073	Histidine Phosphotransfer domain
EC55989_RS10660	SM00260	Two component signalling adaptor domain
EC55989_RS10660	SM00387	Histidine kinase-like ATPases
EC55989_RS10660	SM01231	EC55989_RS10660
EC55989_RS10705	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS10770	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS11010	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EC55989_RS11010	SM00465	GIY-YIG type nucleases (URI domain)
EC55989_RS11015	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS11015	SM00448	cheY-homologous receiver domain
EC55989_RS11030	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS11035	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS11050	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS11050	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
EC55989_RS11085	SM00642	Alpha-amylase domain
EC55989_RS11110	SM01321	EC55989_RS11110
EC55989_RS11115	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS11155	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS11205	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS11255	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EC55989_RS11305	SM00387	Histidine kinase-like ATPases
EC55989_RS11305	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS11310	SM00448	cheY-homologous receiver domain
EC55989_RS11310	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS11315	SM00095	Transthyretin
EC55989_RS11370	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS11375	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS11380	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS11385	SM00823	Phosphopantetheine attachment site
EC55989_RS11390	SM00822	EC55989_RS11390
EC55989_RS11390	SM00823	Phosphopantetheine attachment site
EC55989_RS11390	SM00824	Thioesterase
EC55989_RS11390	SM00825	Beta-ketoacyl synthase
EC55989_RS11390	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
EC55989_RS11425	SM00634	Bacterial Ig-like domain (group 1)
EC55989_RS11525	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS11720	SM00871	Bacterial transcription activator, effector binding domain
EC55989_RS11725	SM00936	Penicillin-binding protein 5, C-terminal domain 
EC55989_RS11730	SM00479	EC55989_RS11730
EC55989_RS11815	SM00984	UDP binding domain
EC55989_RS11820	SM01350	EC55989_RS11820
EC55989_RS11860	SM00858	EC55989_RS11860
EC55989_RS11970	SM00226	Low molecular weight phosphatase family
EC55989_RS11980	SM01091	Transporter associated domain
EC55989_RS12000	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS12000	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
EC55989_RS12000	SM00091	PAS domain
EC55989_RS12000	SM00267	diguanylate cyclase
EC55989_RS12005	SM00478	endonuclease III
EC55989_RS12005	SM01009	AlkA N-terminal domain
EC55989_RS12025	SM00327	von Willebrand factor (vWF) type A domain
EC55989_RS12050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS12050	SM00387	Histidine kinase-like ATPases
EC55989_RS12050	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS12055	SM00448	cheY-homologous receiver domain
EC55989_RS12055	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS12090	SM00046	Diacylglycerol kinase catalytic domain (presumed)
EC55989_RS12095	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS12095	SM01134	EC55989_RS12095
EC55989_RS12100	SM00829	Enoylreductase
EC55989_RS12130	SM01133	EC55989_RS12130
EC55989_RS12150	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS12150	SM00866	EC55989_RS12150
EC55989_RS12155	SM00641	Glycosyl hydrolases family 25
EC55989_RS12225	SM00773	Proposed nucleic acid binding domain
EC55989_RS12240	SM00448	cheY-homologous receiver domain
EC55989_RS12240	SM00850	LytTr DNA-binding domain
EC55989_RS12245	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EC55989_RS12250	SM00422	helix_turn_helix, mercury resistance
EC55989_RS12265	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS12280	SM01217	EC55989_RS12280
EC55989_RS12365	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS12375	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS12430	SM00518	AP endonuclease family 2
EC55989_RS12450	SM00100	Cyclic nucleotide-monophosphate binding domain
EC55989_RS12495	SM00841	Elongation factor P, C-terminal
EC55989_RS12495	SM01185	EC55989_RS12495
EC55989_RS12505	SM00833	Cobalamin synthesis protein cobW C-terminal domain
EC55989_RS12510	SM00014	Acid phosphatase homologues
EC55989_RS12520	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS12540	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS12555	SM00363	S4 RNA-binding domain
EC55989_RS12560	SM00487	DEAD-like helicases superfamily
EC55989_RS12560	SM00490	helicase superfamily c-terminal domain
EC55989_RS12595	SM00869	Autotransporter beta-domain
EC55989_RS12605	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS12605	SM00448	cheY-homologous receiver domain
EC55989_RS12645	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS12670	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS12700	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS12710	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS12735	SM00387	Histidine kinase-like ATPases
EC55989_RS12740	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS12740	SM00448	cheY-homologous receiver domain
EC55989_RS12745	SM00387	Histidine kinase-like ATPases
EC55989_RS12745	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS12745	SM00448	cheY-homologous receiver domain
EC55989_RS12760	SM01359	EC55989_RS12760
EC55989_RS12760	SM01360	EC55989_RS12760
EC55989_RS12775	SM00434	DNA Topoisomerase IV
EC55989_RS12785	SM00869	Autotransporter beta-domain
EC55989_RS12855	SM00852	Probable molybdopterin binding domain
EC55989_RS12920	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EC55989_RS12955	SM00849	Metallo-beta-lactamase superfamily
EC55989_RS13010	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS13010	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
EC55989_RS13015	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
EC55989_RS13050	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EC55989_RS13115	SM00905	Dihydroneopterin aldolase
EC55989_RS13130	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS13145	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS13150	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS13195	SM00859	Semialdehyde dehydrogenase, NAD binding domain
EC55989_RS13215	SM00825	Beta-ketoacyl synthase
EC55989_RS13255	SM00463	Small MutS-related domain
EC55989_RS13375	SM01040	BRO family, N-terminal domain
EC55989_RS13585	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS13665	SM00640	Glycosyl hydrolases family 32
EC55989_RS13670	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS13695	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS13695	SM00448	cheY-homologous receiver domain
EC55989_RS13700	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS13700	SM00073	Histidine Phosphotransfer domain
EC55989_RS13700	SM00387	Histidine kinase-like ATPases
EC55989_RS13700	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS13700	SM00448	cheY-homologous receiver domain
EC55989_RS13755	SM00387	Histidine kinase-like ATPases
EC55989_RS13760	SM00448	cheY-homologous receiver domain
EC55989_RS13760	SM00850	LytTr DNA-binding domain
EC55989_RS13765	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS13825	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS13825	SM00267	diguanylate cyclase
EC55989_RS13915	SM00278	Helix-hairpin-helix DNA-binding motif class 1
EC55989_RS13915	SM00292	breast cancer carboxy-terminal domain
EC55989_RS13915	SM00532	Ligase N family
EC55989_RS13920	SM00771	ZipA, C-terminal domain (FtsZ-binding)
EC55989_RS13965	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS13985	SM00822	EC55989_RS13985
EC55989_RS14030	SM00646	EC55989_RS14030
EC55989_RS14040	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS14045	SM00877	EC55989_RS14045
EC55989_RS14050	SM00877	EC55989_RS14050
EC55989_RS14095	SM00877	EC55989_RS14095
EC55989_RS14120	SM00877	EC55989_RS14120
EC55989_RS14125	SM00919	Malic enzyme, NAD binding domain
EC55989_RS14125	SM01274	EC55989_RS14125
EC55989_RS14135	SM00861	Transketolase, pyrimidine binding domain
EC55989_RS14155	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS14155	SM00387	Histidine kinase-like ATPases
EC55989_RS14225	SM01130	EC55989_RS14225
EC55989_RS14295	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EC55989_RS14295	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS14355	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS14355	SM00267	diguanylate cyclase
EC55989_RS14385	SM00116	Domain in cystathionine beta-synthase and other proteins.
EC55989_RS14385	SM01240	EC55989_RS14385
EC55989_RS14405	SM00564	beta-propeller repeat
EC55989_RS14425	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS14435	SM00562	EC55989_RS14435
EC55989_RS14445	SM01359	EC55989_RS14445
EC55989_RS14445	SM01360	EC55989_RS14445
EC55989_RS14450	SM00450	Rhodanese Homology Domain
EC55989_RS14480	SM00271	DnaJ molecular chaperone homology domain
EC55989_RS14570	SM00829	Enoylreductase
EC55989_RS14580	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS14590	SM00028	Tetratricopeptide repeats
EC55989_RS14610	SM00938	Nitrogen regulatory protein P-II
EC55989_RS14615	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS14615	SM00448	cheY-homologous receiver domain
EC55989_RS14625	SM00387	Histidine kinase-like ATPases
EC55989_RS14625	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS14630	SM01211	EC55989_RS14630
EC55989_RS14635	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS14695	SM00358	Double-stranded RNA binding motif
EC55989_RS14695	SM00535	Ribonuclease III family
EC55989_RS14745	SM00487	DEAD-like helicases superfamily
EC55989_RS14745	SM00490	helicase superfamily c-terminal domain
EC55989_RS14770	SM00986	Uracil DNA glycosylase superfamily
EC55989_RS14770	SM00987	UreE urease accessory protein, C-terminal domain 
EC55989_RS14775	SM00967	RNA 2'-O ribose methyltransferase substrate binding
EC55989_RS14790	SM01144	EC55989_RS14790
EC55989_RS14795	SM00881	CoA binding domain
EC55989_RS14800	SM00155	Phospholipase D. Active site motifs.
EC55989_RS14840	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS14840	SM01086	C-terminal, D2-small domain, of ClpB protein
EC55989_RS14850	SM00363	S4 RNA-binding domain
EC55989_RS14870	SM00830	Chorismate mutase type II
EC55989_RS14875	SM00830	Chorismate mutase type II
EC55989_RS14895	SM00267	diguanylate cyclase
EC55989_RS14925	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS14925	SM00962	SRP54-type protein, GTPase domain
EC55989_RS14925	SM00963	SRP54-type protein, helical bundle domain
EC55989_RS14935	SM01091	Transporter associated domain
EC55989_RS15080	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS15080	SM00895	EC55989_RS15080
EC55989_RS15085	SM00257	Lysin motif
EC55989_RS15085	SM00749	bacterial OsmY and nodulation domain
EC55989_RS15095	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
EC55989_RS15100	SM00450	Rhodanese Homology Domain
EC55989_RS15105	SM00528	Domain in histone-like proteins of HNS family
EC55989_RS15145	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS15175	SM00347	helix_turn_helix multiple antibiotic resistance protein
EC55989_RS15240	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
EC55989_RS15255	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS15295	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS15295	SM01134	EC55989_RS15295
EC55989_RS15305	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EC55989_RS15305	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS15310	SM00849	Metallo-beta-lactamase superfamily
EC55989_RS15330	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS15350	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS15435	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EC55989_RS15435	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS15450	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
EC55989_RS15450	SM00534	ATPase domain of DNA mismatch repair MUTS family
EC55989_RS15460	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS15460	SM01134	EC55989_RS15460
EC55989_RS15475	SM01007	Class II Aldolase and Adducin N-terminal domain
EC55989_RS15505	SM00347	helix_turn_helix multiple antibiotic resistance protein
EC55989_RS15515	SM00257	Lysin motif
EC55989_RS15585	SM01101	EC55989_RS15585
EC55989_RS15610	SM00487	DEAD-like helicases superfamily
EC55989_RS15660	SM00893	Electron transfer flavoprotein domain
EC55989_RS15705	SM01192	EC55989_RS15705
EC55989_RS15705	SM01193	EC55989_RS15705
EC55989_RS15725	SM00966	SpoVT / AbrB like domain 
EC55989_RS15730	SM00954	Region found in RelA / SpoT proteins
EC55989_RS15750	SM00073	Histidine Phosphotransfer domain
EC55989_RS15750	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS15750	SM00387	Histidine kinase-like ATPases
EC55989_RS15750	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS15750	SM00448	cheY-homologous receiver domain
EC55989_RS15755	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EC55989_RS15815	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
EC55989_RS15815	SM00475	5'-3' exonuclease
EC55989_RS15825	SM01007	Class II Aldolase and Adducin N-terminal domain
EC55989_RS15850	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS15850	SM01134	EC55989_RS15850
EC55989_RS15890	SM00925	MltA specific insert domain
EC55989_RS15910	SM00646	EC55989_RS15910
EC55989_RS15920	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS15970	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
EC55989_RS15990	SM00927	DNA mismatch repair enzyme MutH
EC55989_RS16015	SM00563	Phosphate acyltransferases
EC55989_RS16020	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS16070	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS16095	SM00028	Tetratricopeptide repeats
EC55989_RS16095	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS16110	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS16155	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS16215	SM00257	Lysin motif
EC55989_RS16220	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
EC55989_RS16225	SM01092	CO dehydrogenase flavoprotein C-terminal domain
EC55989_RS16235	SM00091	PAS domain
EC55989_RS16235	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS16290	SM01092	CO dehydrogenase flavoprotein C-terminal domain
EC55989_RS16295	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
EC55989_RS16350	SM00937	EC55989_RS16350
EC55989_RS16400	SM01022	EC55989_RS16400
EC55989_RS16440	SM01011	Aminopeptidase P, N-terminal domain
EC55989_RS16535	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
EC55989_RS16555	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS16560	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS16595	SM00861	Transketolase, pyrimidine binding domain
EC55989_RS16645	SM00731	SprT homologues.
EC55989_RS16670	SM00732	Likely ribonuclease with RNase H fold.
EC55989_RS16675	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS16690	SM01152	EC55989_RS16690
EC55989_RS16700	SM00729	Elongator protein 3, MiaB family, Radical SAM
EC55989_RS16710	SM00870	EC55989_RS16710
EC55989_RS16735	SM00478	endonuclease III
EC55989_RS16735	SM00525	EC55989_RS16735
EC55989_RS16790	SM00487	DEAD-like helicases superfamily
EC55989_RS16790	SM00490	helicase superfamily c-terminal domain
EC55989_RS16795	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS16860	SM00869	Autotransporter beta-domain
EC55989_RS16895	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS16895	SM01086	C-terminal, D2-small domain, of ClpB protein
EC55989_RS17015	SM00470	ParB-like nuclease domain
EC55989_RS17050	SM00974	EC55989_RS17050
EC55989_RS17135	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS17135	SM01086	C-terminal, D2-small domain, of ClpB protein
EC55989_RS17235	SM00869	Autotransporter beta-domain
EC55989_RS17335	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS17360	SM01276	EC55989_RS17360
EC55989_RS17400	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS17400	SM00895	EC55989_RS17400
EC55989_RS17570	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS17600	SM00729	Elongator protein 3, MiaB family, Radical SAM
EC55989_RS17610	SM00563	Phosphate acyltransferases
EC55989_RS17615	SM00434	DNA Topoisomerase IV
EC55989_RS17625	SM00871	Bacterial transcription activator, effector binding domain
EC55989_RS17635	SM00448	cheY-homologous receiver domain
EC55989_RS17635	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS17640	SM00387	Histidine kinase-like ATPases
EC55989_RS17640	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS17660	SM00387	Histidine kinase-like ATPases
EC55989_RS17660	SM00433	TopoisomeraseII
EC55989_RS17760	SM00244	prohibitin homologues
EC55989_RS17785	SM01118	EC55989_RS17785
EC55989_RS17795	SM00287	Bacterial SH3 domain homologues
EC55989_RS17810	SM00905	Dihydroneopterin aldolase
EC55989_RS17815	SM01207	EC55989_RS17815
EC55989_RS17850	SM00400	zinc finger
EC55989_RS17850	SM00493	EC55989_RS17850
EC55989_RS17850	SM00766	DNA primase DnaG DnaB-binding
EC55989_RS17880	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
EC55989_RS17880	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EC55989_RS17895	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS17900	SM01038	Beta galactosidase small chain
EC55989_RS17930	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS17975	SM00858	EC55989_RS17975
EC55989_RS18010	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS18010	SM00895	EC55989_RS18010
EC55989_RS18170	SM00858	EC55989_RS18170
EC55989_RS18185	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS18185	SM01134	EC55989_RS18185
EC55989_RS18290	SM00749	bacterial OsmY and nodulation domain
EC55989_RS18300	SM00859	Semialdehyde dehydrogenase, NAD binding domain
EC55989_RS18315	SM00465	GIY-YIG type nucleases (URI domain)
EC55989_RS18355	SM00487	DEAD-like helicases superfamily
EC55989_RS18355	SM00490	helicase superfamily c-terminal domain
EC55989_RS18360	SM00028	Tetratricopeptide repeats
EC55989_RS18365	SM00316	Ribosomal protein S1-like RNA-binding domain
EC55989_RS18365	SM00322	K homology RNA-binding domain
EC55989_RS18370	SM01387	EC55989_RS18370
EC55989_RS18390	SM00316	Ribosomal protein S1-like RNA-binding domain
EC55989_RS18435	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS18445	SM01103	EC55989_RS18445
EC55989_RS18520	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS18550	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS18595	SM00073	Histidine Phosphotransfer domain
EC55989_RS18595	SM00091	PAS domain
EC55989_RS18595	SM00387	Histidine kinase-like ATPases
EC55989_RS18595	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS18595	SM00448	cheY-homologous receiver domain
EC55989_RS18600	SM00729	Elongator protein 3, MiaB family, Radical SAM
EC55989_RS18645	SM01130	EC55989_RS18645
EC55989_RS18650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS18650	SM00895	EC55989_RS18650
EC55989_RS18690	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EC55989_RS18695	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
EC55989_RS18750	SM00316	Ribosomal protein S1-like RNA-binding domain
EC55989_RS18780	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS18780	SM00267	diguanylate cyclase
EC55989_RS18785	SM00829	Enoylreductase
EC55989_RS18810	SM00878	Biotin carboxylase C-terminal domain
EC55989_RS18875	SM00062	Bacterial periplasmic substrate-binding proteins
EC55989_RS18890	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS18995	SM00422	helix_turn_helix, mercury resistance
EC55989_RS19010	SM00662	RNA polymerases D
EC55989_RS19015	SM00363	S4 RNA-binding domain
EC55989_RS19015	SM01390	EC55989_RS19015
EC55989_RS19080	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
EC55989_RS19085	SM01374	EC55989_RS19085
EC55989_RS19105	SM00322	K homology RNA-binding domain
EC55989_RS19120	SM01382	EC55989_RS19120
EC55989_RS19120	SM01383	EC55989_RS19120
EC55989_RS19140	SM01403	EC55989_RS19140
EC55989_RS19170	SM00838	Elongation factor G C-terminus
EC55989_RS19170	SM00889	Elongation factor G, domain IV
EC55989_RS19235	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19265	SM00100	Cyclic nucleotide-monophosphate binding domain
EC55989_RS19265	SM00419	helix_turn_helix, cAMP Regulatory protein
EC55989_RS19350	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS19350	SM00866	EC55989_RS19350
EC55989_RS19430	SM00965	Secretin and TonB N terminus short domain
EC55989_RS19475	SM00363	S4 RNA-binding domain
EC55989_RS19510	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS19510	SM00387	Histidine kinase-like ATPases
EC55989_RS19510	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS19515	SM00448	cheY-homologous receiver domain
EC55989_RS19515	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS19525	SM00316	Ribosomal protein S1-like RNA-binding domain
EC55989_RS19525	SM00732	Likely ribonuclease with RNase H fold.
EC55989_RS19530	SM00899	EC55989_RS19530
EC55989_RS19580	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS19595	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19600	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS19600	SM01134	EC55989_RS19600
EC55989_RS19610	SM00450	Rhodanese Homology Domain
EC55989_RS19655	SM00642	Alpha-amylase domain
EC55989_RS19660	SM00642	Alpha-amylase domain
EC55989_RS19665	SM00859	Semialdehyde dehydrogenase, NAD binding domain
EC55989_RS19685	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS19735	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19760	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19765	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19810	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19815	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19815	SM00962	SRP54-type protein, GTPase domain
EC55989_RS19815	SM00963	SRP54-type protein, helical bundle domain
EC55989_RS19890	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19895	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19920	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS19965	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS19965	SM00387	Histidine kinase-like ATPases
EC55989_RS19965	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS19970	SM00448	cheY-homologous receiver domain
EC55989_RS19970	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS20015	SM00746	metallochaperone-like domain
EC55989_RS20045	SM00448	cheY-homologous receiver domain
EC55989_RS20045	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS20050	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS20050	SM00387	Histidine kinase-like ATPases
EC55989_RS20050	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS20070	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS20095	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS20165	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
EC55989_RS20180	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
EC55989_RS20200	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS20245	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS20250	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS20260	SM01235	EC55989_RS20260
EC55989_RS20270	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS20295	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS20320	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS20320	SM00267	diguanylate cyclase
EC55989_RS20325	SM00028	Tetratricopeptide repeats
EC55989_RS20395	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS20400	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS20500	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS20505	SM00357	Cold shock protein domain
EC55989_RS20560	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS20570	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS20575	SM00047	Lysozyme subfamily 2
EC55989_RS20580	SM00642	Alpha-amylase domain
EC55989_RS20600	SM00346	helix_turn_helix isocitrate lyase regulation
EC55989_RS20635	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
EC55989_RS20645	SM01007	Class II Aldolase and Adducin N-terminal domain
EC55989_RS20790	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS20790	SM00895	EC55989_RS20790
EC55989_RS20805	SM00971	Serine acetyltransferase, N-terminal
EC55989_RS20825	SM00450	Rhodanese Homology Domain
EC55989_RS20850	SM00829	Enoylreductase
EC55989_RS20930	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
EC55989_RS20930	SM01232	EC55989_RS20930
EC55989_RS20990	SM00532	Ligase N family
EC55989_RS20995	SM00072	Guanylate kinase homologues.
EC55989_RS21000	SM01409	EC55989_RS21000
EC55989_RS21005	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EC55989_RS21005	SM00954	Region found in RelA / SpoT proteins
EC55989_RS21015	SM00487	DEAD-like helicases superfamily
EC55989_RS21015	SM00490	helicase superfamily c-terminal domain
EC55989_RS21110	SM00387	Histidine kinase-like ATPases
EC55989_RS21115	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS21115	SM00448	cheY-homologous receiver domain
EC55989_RS21185	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS21200	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS21200	SM00866	EC55989_RS21200
EC55989_RS21240	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EC55989_RS21255	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS21255	SM00895	EC55989_RS21255
EC55989_RS21280	SM00387	Histidine kinase-like ATPases
EC55989_RS21280	SM00433	TopoisomeraseII
EC55989_RS21290	SM00480	DNA polymerase III beta subunit
EC55989_RS21295	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS21295	SM00760	Bacterial dnaA protein helix-turn-helix domain
EC55989_RS21310	SM01234	EC55989_RS21310
EC55989_RS21410	SM01061	CAT RNA binding domain
EC55989_RS21420	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS21475	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS21520	SM01228	EC55989_RS21520
EC55989_RS21530	SM00344	helix_turn_helix ASNC type
EC55989_RS21540	SM00327	von Willebrand factor (vWF) type A domain
EC55989_RS21545	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS21560	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS21580	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS21590	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS21590	SM00895	EC55989_RS21590
EC55989_RS21635	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS21700	SM00487	DEAD-like helicases superfamily
EC55989_RS21700	SM00490	helicase superfamily c-terminal domain
EC55989_RS21715	SM00357	Cold shock protein domain
EC55989_RS21715	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS21715	SM00959	Rho termination factor, N-terminal domain
EC55989_RS21740	SM00984	UDP binding domain
EC55989_RS21845	SM01219	EC55989_RS21845
EC55989_RS21945	SM00341	Helicase and RNase D C-terminal
EC55989_RS21945	SM00487	DEAD-like helicases superfamily
EC55989_RS21945	SM00490	helicase superfamily c-terminal domain
EC55989_RS21945	SM00956	EC55989_RS21945
EC55989_RS22035	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
EC55989_RS22135	SM00563	Phosphate acyltransferases
EC55989_RS22145	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
EC55989_RS22145	SM00474	3'-5' exonuclease
EC55989_RS22145	SM00475	5'-3' exonuclease
EC55989_RS22145	SM00482	DNA polymerase A domain
EC55989_RS22160	SM00729	Elongator protein 3, MiaB family, Radical SAM
EC55989_RS22170	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS22170	SM00448	cheY-homologous receiver domain
EC55989_RS22175	SM00091	PAS domain
EC55989_RS22175	SM00387	Histidine kinase-like ATPases
EC55989_RS22175	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS22180	SM01230	EC55989_RS22180
EC55989_RS22195	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS22195	SM00866	EC55989_RS22195
EC55989_RS22210	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS22210	SM01134	EC55989_RS22210
EC55989_RS22225	SM01133	EC55989_RS22225
EC55989_RS22230	SM00829	Enoylreductase
EC55989_RS22280	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS22320	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS22360	SM01007	Class II Aldolase and Adducin N-terminal domain
EC55989_RS22380	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS22385	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS22415	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS22415	SM00387	Histidine kinase-like ATPases
EC55989_RS22415	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS22420	SM00448	cheY-homologous receiver domain
EC55989_RS22420	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS22510	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS22510	SM01086	C-terminal, D2-small domain, of ClpB protein
EC55989_RS22525	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS22530	SM00487	DEAD-like helicases superfamily
EC55989_RS22530	SM00490	helicase superfamily c-terminal domain
EC55989_RS22660	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS22680	SM00859	Semialdehyde dehydrogenase, NAD binding domain
EC55989_RS22695	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
EC55989_RS22810	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
EC55989_RS22810	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
EC55989_RS22815	SM00649	Ribosomal protein L11/L12
EC55989_RS22840	SM00663	RNA polymerase I subunit A N-terminus
EC55989_RS22850	SM00876	Biotin and Thiamin Synthesis associated domain
EC55989_RS22905	SM00411	bacterial (prokaryotic) histone like domain
EC55989_RS22920	SM00387	Histidine kinase-like ATPases
EC55989_RS22920	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS22925	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS22925	SM00448	cheY-homologous receiver domain
EC55989_RS22930	SM01209	EC55989_RS22930
EC55989_RS22930	SM01210	EC55989_RS22930
EC55989_RS22935	SM00798	AICARFT/IMPCHase bienzyme
EC55989_RS22935	SM00851	MGS-like domain
EC55989_RS23000	SM00346	helix_turn_helix isocitrate lyase regulation
EC55989_RS23005	SM01018	B12 binding domain
EC55989_RS23020	SM00363	S4 RNA-binding domain
EC55989_RS23030	SM00244	prohibitin homologues
EC55989_RS23115	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS23150	SM00563	Phosphate acyltransferases
EC55989_RS23200	SM00829	Enoylreductase
EC55989_RS23205	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS23210	SM01005	Alanine racemase, C-terminal domain
EC55989_RS23255	SM00052	Putative diguanylate phosphodiesterase
EC55989_RS23260	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS23265	SM00422	helix_turn_helix, mercury resistance
EC55989_RS23330	SM00028	Tetratricopeptide repeats
EC55989_RS23340	SM00671	Sel1-like repeats.
EC55989_RS23350	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
EC55989_RS23375	SM00849	Metallo-beta-lactamase superfamily
EC55989_RS23400	SM00072	Guanylate kinase homologues.
EC55989_RS23410	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS23415	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS23440	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS23440	SM00866	EC55989_RS23440
EC55989_RS23455	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS23490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS23490	SM00387	Histidine kinase-like ATPases
EC55989_RS23490	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS23495	SM00448	cheY-homologous receiver domain
EC55989_RS23495	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS23510	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS23520	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS23560	SM00448	cheY-homologous receiver domain
EC55989_RS23565	SM00091	PAS domain
EC55989_RS23565	SM00387	Histidine kinase-like ATPases
EC55989_RS23615	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS23715	SM01006	Siderophore biosynthesis protein domain
EC55989_RS23785	SM00869	Autotransporter beta-domain
EC55989_RS23905	SM00869	Autotransporter beta-domain
EC55989_RS23980	SM00883	Chaperonin 10 Kd subunit
EC55989_RS24010	SM00841	Elongation factor P, C-terminal
EC55989_RS24010	SM01185	EC55989_RS24010
EC55989_RS24095	SM00479	EC55989_RS24095
EC55989_RS24130	SM00646	EC55989_RS24130
EC55989_RS24135	SM00853	MutL C terminal dimerisation domain
EC55989_RS24135	SM01340	EC55989_RS24135
EC55989_RS24155	SM00244	prohibitin homologues
EC55989_RS24160	SM00244	prohibitin homologues
EC55989_RS24170	SM00788	Adenylosuccinate synthetase
EC55989_RS24180	SM00316	Ribosomal protein S1-like RNA-binding domain
EC55989_RS24180	SM00357	Cold shock protein domain
EC55989_RS24180	SM00955	EC55989_RS24180
EC55989_RS24185	SM00967	RNA 2'-O ribose methyltransferase substrate binding
EC55989_RS24240	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS24240	SM01134	EC55989_RS24240
EC55989_RS24265	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
EC55989_RS24275	SM01007	Class II Aldolase and Adducin N-terminal domain
EC55989_RS24390	SM01091	Transporter associated domain
EC55989_RS24420	SM00966	SpoVT / AbrB like domain 
EC55989_RS24440	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS24490	SM00642	Alpha-amylase domain
EC55989_RS24500	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS24505	SM00831	Cation transporter/ATPase, N-terminus
EC55989_RS24545	SM00822	EC55989_RS24545
EC55989_RS24620	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS24645	SM00829	Enoylreductase
EC55989_RS24725	SM00945	ProQ/FINO family
EC55989_RS24780	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
EC55989_RS24800	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS24810	SM00528	Domain in histone-like proteins of HNS family
EC55989_RS24880	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS24975	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
EC55989_RS25005	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS25075	SM00354	helix_turn _helix lactose operon repressor
EC55989_RS25115	SM00420	helix_turn_helix, Deoxyribose operon repressor
EC55989_RS25115	SM01134	EC55989_RS25115
EC55989_RS25215	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS25235	SM00965	Secretin and TonB N terminus short domain
EC55989_RS25365	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS25365	SM00895	EC55989_RS25365
EC55989_RS25450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
EC55989_RS25485	SM00487	DEAD-like helicases superfamily
EC55989_RS25495	SM00833	Cobalamin synthesis protein cobW C-terminal domain
EC55989_RS25515	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EC55989_RS25515	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS25515	SM00319	Homologues of the ligand binding domain of Tar
EC55989_RS25525	SM00895	EC55989_RS25525
EC55989_RS25530	SM00829	Enoylreductase
EC55989_RS25545	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS25565	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS25570	SM00421	helix_turn_helix, Lux Regulon
EC55989_RS25630	SM00749	bacterial OsmY and nodulation domain
EC55989_RS25665	SM01133	EC55989_RS25665
EC55989_RS25670	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
EC55989_RS25705	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS25710	SM00530	Helix-turn-helix XRE-family like proteins 
EC55989_RS25720	SM00382	ATPases associated with a variety of cellular activities
EC55989_RS25740	SM00855	Phosphoglycerate mutase family
EC55989_RS25745	SM00342	helix_turn_helix, arabinose operon control protein
EC55989_RS25745	SM00871	Bacterial transcription activator, effector binding domain
EC55989_RS25755	SM00448	cheY-homologous receiver domain
EC55989_RS25755	SM00862	Transcriptional regulatory protein, C terminal
EC55989_RS25760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
EC55989_RS25760	SM00387	Histidine kinase-like ATPases
EC55989_RS25760	SM00388	His Kinase A (phosphoacceptor) domain
EC55989_RS25770	SM00448	cheY-homologous receiver domain
EC55989_RS25770	SM00862	Transcriptional regulatory protein, C terminal
