locus-tag	class	description
JR895_RS00010	COG0592	DNA-directed DNA polymerase activity
JR895_RS00020	COG0187	DNA topoisomerase II activity
JR895_RS00025	COG3753	Protein conserved in bacteria
JR895_RS00030	COG0561	phosphatase activity
JR895_RS00040	COG2186	Transcriptional regulator
JR895_RS00045	COG3734	2-keto-3-deoxy-galactonokinase
JR895_RS00050	COG0800	Aldolase
JR895_RS00060	COG2271	Major facilitator Superfamily
JR895_RS00070	COG0823	Involved in the tonB-independent uptake of proteins
JR895_RS00075	COG5645	(Lipo)protein
JR895_RS00095	COG2188	Transcriptional regulator
JR895_RS00110	COG2207	Transcriptional regulator
JR895_RS00115	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JR895_RS00120	COG3119	arylsulfatase activity
JR895_RS00130	COG2149	membrane
JR895_RS00140	COG0641	radical SAM
JR895_RS00145	COG2814	Major facilitator Superfamily
JR895_RS00165	COG0028	Belongs to the TPP enzyme family
JR895_RS00170	COG0440	acetolactate synthase activity
JR895_RS00175	COG2197	response regulator
JR895_RS00180	COG3851	Histidine kinase
JR895_RS00185	COG2271	Major facilitator Superfamily
JR895_RS00190	COG2271	Major facilitator Superfamily
JR895_RS00200	COG2252	PERMEase
JR895_RS00220	COG1464	Belongs to the NlpA lipoprotein family
JR895_RS00225	COG0697	spore germination
JR895_RS00230	COG2814	Major facilitator Superfamily
JR895_RS00265	COG2003	Belongs to the UPF0758 family
JR895_RS00295	COG0232	Belongs to the dGTPase family. Type 2 subfamily
JR895_RS00305	COG3436	PFAM IS66 Orf2 family protein
JR895_RS00310	COG4372	Transposase
JR895_RS00315	COG3436	PFAM IS66 Orf2 family protein
JR895_RS00345	COG0582	viral genome integration into host DNA
JR895_RS00360	COG1501	Belongs to the glycosyl hydrolase 31 family
JR895_RS00365	COG2982	Protein involved in outer membrane biogenesis
JR895_RS00370	COG2233	PERMEase
JR895_RS00375	COG0786	glutamate:sodium symporter activity
JR895_RS00380	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JR895_RS00385	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JR895_RS00390	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JR895_RS00400	COG0194	GDP metabolic process
JR895_RS00410	COG2860	membrane
JR895_RS00415	COG3645	SOS response
JR895_RS00420	COG1561	YicC-like family, N-terminal region
JR895_RS00445	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JR895_RS00475	COG1519	Transferase
JR895_RS00480	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS00485	COG0859	PFAM glycosyl transferase family 9
JR895_RS00490	COG0438	transferase activity, transferring glycosyl groups
JR895_RS00495	COG0515	serine threonine protein kinase
JR895_RS00510	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JR895_RS00515	COG1442	glycosyl transferase family 8
JR895_RS00530	COG0859	PFAM glycosyl transferase family 9
JR895_RS00535	COG0859	PFAM glycosyl transferase family 9
JR895_RS00545	COG0156	8-amino-7-oxononanoate synthase activity
JR895_RS00555	COG1216	Glycosyl transferase, family 2
JR895_RS00560	COG2861	carbohydrate metabolic process
JR895_RS00565	COG4942	peptidase
JR895_RS00570	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JR895_RS00575	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JR895_RS00580	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JR895_RS00595	COG1045	serine acetyltransferase
JR895_RS00600	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JR895_RS00610	COG2186	Transcriptional regulator
JR895_RS00615	COG1620	l-lactate permease
JR895_RS00630	COG3722	fumarate hydratase activity
JR895_RS00640	COG2213	PTS system mannitol-specific
JR895_RS00640	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS00650	COG1566	PFAM secretion protein HlyD family protein
JR895_RS00660	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JR895_RS00670	COG1413	lyase activity
JR895_RS00680	COG0625	glutathione transferase activity
JR895_RS00690	COG3276	selenocysteine insertion sequence binding
JR895_RS00695	COG1454	alcohol dehydrogenase
JR895_RS00700	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS00715	COG1566	PFAM secretion protein HlyD family protein
JR895_RS00720	COG0583	DNA-binding transcription factor activity
JR895_RS00725	COG3713	MltA-interacting MipA family protein
JR895_RS00735	COG0235	Class ii aldolase
JR895_RS00740	COG3623	hexulose-6-phosphate isomerase
JR895_RS00745	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
JR895_RS00750	COG1070	Carbohydrate kinase
JR895_RS00755	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JR895_RS00760	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
JR895_RS00765	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
JR895_RS00770	COG2731	YhcH YjgK YiaL family protein
JR895_RS00780	COG1414	Transcriptional regulator
JR895_RS00785	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS00790	COG3977	Valine--pyruvate aminotransferase
JR895_RS00795	COG0366	Alpha amylase catalytic
JR895_RS00800	COG2992	FlgJ-related protein
JR895_RS00805	COG1609	Transcriptional regulator
JR895_RS00805	COG2207	Transcriptional regulator
JR895_RS00810	COG4214	carbohydrate transport
JR895_RS00815	COG1129	ABC transporter
JR895_RS00820	COG4213	ABC transporter substrate-binding protein
JR895_RS00830	COG1070	Carbohydrate kinase
JR895_RS00835	COG4682	membrane
JR895_RS00840	COG4682	membrane
JR895_RS00845	COG3274	enterobacterial common antigen metabolic process
JR895_RS00875	COG1278	Cold shock
JR895_RS00880	COG2944	sequence-specific DNA binding
JR895_RS00895	COG2885	chlorophyll binding
JR895_RS00900	COG0243	molybdopterin cofactor binding
JR895_RS00905	COG0456	acetyltransferase
JR895_RS00910	COG2818	Glycosylase
JR895_RS00915	COG5571	outer membrane autotransporter
JR895_RS00920	COG2223	nitrite transmembrane transporter activity
JR895_RS00925	COG2194	sulfuric ester hydrolase activity
JR895_RS00940	COG0747	negative chemotaxis
JR895_RS00945	COG0601	transmembrane transport
JR895_RS00950	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JR895_RS00955	COG0444	Belongs to the ABC transporter superfamily
JR895_RS00960	COG4608	Belongs to the ABC transporter superfamily
JR895_RS00965	COG0814	amino acid
JR895_RS00975	COG2194	sulfuric ester hydrolase activity
JR895_RS01000	COG1215	transferase activity, transferring glycosyl groups
JR895_RS01005	COG1215	transferase activity, transferring glycosyl groups
JR895_RS01010	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JR895_RS01015	COG3118	belongs to the thioredoxin family
JR895_RS01015	COG0457	Tetratricopeptide repeat
JR895_RS01020	COG2199	diguanylate cyclase activity
JR895_RS01020	COG2200	EAL domain
JR895_RS01030	COG0612	Peptidase, M16
JR895_RS01035	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JR895_RS01040	COG2200	EAL domain
JR895_RS01045	COG2982	Protein involved in outer membrane biogenesis
JR895_RS01050	COG0477	Major facilitator Superfamily
JR895_RS01055	COG1295	ribonuclease BN
JR895_RS01060	COG0583	DNA-binding transcription factor activity
JR895_RS01065	COG2197	response regulator
JR895_RS01075	COG1858	cytochrome C peroxidase
JR895_RS01080	COG0076	glutamate decarboxylase activity
JR895_RS01085	COG2207	Transcriptional regulator
JR895_RS01090	COG2207	Transcriptional regulator
JR895_RS01095	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JR895_RS01100	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JR895_RS01110	COG2771	luxR family
JR895_RS01115	COG3247	response to pH
JR895_RS01130	COG1285	pathogenesis
JR895_RS01135	COG2197	response regulator
JR895_RS01140	COG3065	identical protein binding
JR895_RS01160	COG1393	Belongs to the ArsC family
JR895_RS01165	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JR895_RS01170	COG0640	Transcriptional regulator
JR895_RS01180	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JR895_RS01185	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JR895_RS01190	COG0339	signal peptide processing
JR895_RS01200	COG3104	oligopeptide transport
JR895_RS01205	COG0589	response to stress
JR895_RS01215	COG0306	phosphate transporter
JR895_RS01220	COG2081	HI0933 family
JR895_RS01240	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JR895_RS01245	COG0842	Transport permease protein
JR895_RS01245	COG1129	ABC transporter
JR895_RS01250	COG0842	Transport permease protein
JR895_RS01255	COG5433	transposase activity
JR895_RS01270	COG3209	COG3209 Rhs family protein
JR895_RS01280	COG1124	(ABC) transporter
JR895_RS01285	COG0444	Belongs to the ABC transporter superfamily
JR895_RS01290	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JR895_RS01295	COG0601	transmembrane transport
JR895_RS01300	COG0747	negative chemotaxis
JR895_RS01305	COG2091	lysine biosynthetic process via aminoadipic acid
JR895_RS01310	COG0628	permease
JR895_RS01325	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JR895_RS01340	COG3714	YhhN family
JR895_RS01350	COG3776	membrane
JR895_RS01355	COG0742	ribosomal rna small subunit methyltransferase
JR895_RS01360	COG0552	protein localization to endoplasmic reticulum
JR895_RS01365	COG2884	Cell division ATP-binding protein ftsE
JR895_RS01370	COG2177	Part of the ABC transporter FtsEX involved in
JR895_RS01375	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JR895_RS01380	COG0683	leucine binding
JR895_RS01385	COG0456	acetyltransferase
JR895_RS01390	COG0683	leucine binding
JR895_RS01395	COG0559	Belongs to the binding-protein-dependent transport system permease family
JR895_RS01400	COG4177	L-phenylalanine transmembrane transporter activity
JR895_RS01405	COG0411	ABC transporter
JR895_RS01410	COG0410	ABC transporter
JR895_RS01415	COG1653	transport
JR895_RS01420	COG1175	transmembrane transport
JR895_RS01425	COG0395	ABC-type sugar transport system, permease component
JR895_RS01430	COG3842	ATPase activity
JR895_RS01435	COG0584	glycerophosphoryl diester phosphodiesterase
JR895_RS01445	COG0405	Gamma-glutamyltransferase
JR895_RS01465	COG3157	Type VI secretion system effector, Hcp
JR895_RS01470	COG1247	-acetyltransferase
JR895_RS01475	COG0673	inositol 2-dehydrogenase activity
JR895_RS01480	COG1741	Belongs to the pirin family
JR895_RS01485	COG1609	Transcriptional regulator
JR895_RS01490	COG3265	gluconokinase activity
JR895_RS01495	COG2610	gluconate transmembrane transporter activity
JR895_RS01500	COG2095	MarC family integral membrane protein
JR895_RS01505	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JR895_RS01530	COG0058	SHG alpha-glucan phosphorylase activity
JR895_RS01535	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JR895_RS01555	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JR895_RS01570	COG1349	DNA-binding transcription factor activity
JR895_RS01575	COG4650	regulator
JR895_RS01580	COG1690	Belongs to the RtcB family
JR895_RS01595	COG0058	SHG alpha-glucan phosphorylase activity
JR895_RS01600	COG1640	4-alpha-glucanotransferase
JR895_RS01605	COG2610	gluconate transmembrane transporter activity
JR895_RS01615	COG1040	competence protein
JR895_RS01625	COG5464	transposase or invertase
JR895_RS01635	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JR895_RS01640	COG1918	ferrous iron import across plasma membrane
JR895_RS01645	COG2183	response to ionizing radiation
JR895_RS01650	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JR895_RS01670	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
JR895_RS01680	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JR895_RS01685	COG1011	Hydrolase
JR895_RS01695	COG0494	nUDIX hydrolase
JR895_RS01700	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JR895_RS01705	COG4972	Pilus assembly protein
JR895_RS01710	COG3166	PFAM Fimbrial assembly family protein
JR895_RS01725	COG4796	Type ii and iii secretion system protein
JR895_RS01740	COG3266	domain, Protein
JR895_RS01745	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JR895_RS01750	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JR895_RS01755	COG0546	phosphoglycolate phosphatase activity
JR895_RS01760	COG0180	Tryptophanyl-tRNA synthetase
JR895_RS01765	COG2188	Transcriptional regulator
JR895_RS01775	COG3457	Alanine racemase
JR895_RS01780	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JR895_RS01785	COG1735	metal-dependent hydrolase with the TIM-barrel fold
JR895_RS01800	COG0626	cystathionine gamma-synthase activity
JR895_RS01805	COG2188	Transcriptional regulator
JR895_RS01815	COG1082	Xylose isomerase domain protein TIM barrel
JR895_RS01820	COG2222	sugar isomerase
JR895_RS01825	COG0531	amino acid
JR895_RS01840	COG2116	formate transmembrane transporter activity
JR895_RS01845	COG2146	nitrite reductase [NAD(P)H] activity
JR895_RS01850	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JR895_RS01860	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JR895_RS01870	COG2184	nucleotidyltransferase activity
JR895_RS01875	COG0512	Glutamine amidotransferase of anthranilate synthase
JR895_RS01880	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JR895_RS01885	COG1289	transmembrane transporter activity
JR895_RS01890	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JR895_RS01895	COG1765	OsmC-like protein
JR895_RS01900	COG3954	Phosphoribulokinase
JR895_RS01910	COG0429	hydrolase of the alpha beta-hydrolase fold
JR895_RS01915	COG0488	(ABC) transporter
JR895_RS01930	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
JR895_RS01935	COG1047	Peptidyl-prolyl cis-trans
JR895_RS01945	COG0545	Peptidyl-prolyl cis-trans isomerase
JR895_RS01950	COG2964	Protein conserved in bacteria
JR895_RS01990	COG3979	chitinase
JR895_RS01995	COG2906	2 iron, 2 sulfur cluster binding
JR895_RS02000	COG2193	ferroxidase activity
JR895_RS02005	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JR895_RS02010	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
JR895_RS02015	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
JR895_RS02020	COG3156	type II secretion system protein K
JR895_RS02025	COG4795	General secretion pathway protein
JR895_RS02030	COG2165	general secretion pathway protein
JR895_RS02035	COG2165	general secretion pathway protein
JR895_RS02040	COG2165	general secretion pathway protein
JR895_RS02050	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JR895_RS02055	COG1450	Type ii and iii secretion system protein
JR895_RS02060	COG3031	protein transport across the cell outer membrane
JR895_RS02065	COG3267	Type II secretory pathway component ExeA
JR895_RS02065	COG3409	Peptidoglycan-binding domain 1 protein
JR895_RS02090	COG0089	rRNA binding
JR895_RS02180	COG0201	protein transport
JR895_RS02220	COG0789	Transcriptional regulator
JR895_RS02225	COG3036	rescue of stalled ribosome
JR895_RS02235	COG0569	domain protein
JR895_RS02255	COG0758	DNA mediated transformation
JR895_RS02265	COG0551	DNA topoisomerase type I activity
JR895_RS02285	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JR895_RS02325	COG1126	abc transporter atp-binding protein
JR895_RS02330	COG0765	amino acid transport
JR895_RS02335	COG4597	amino acid ABC transporter
JR895_RS02340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JR895_RS02350	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JR895_RS02355	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JR895_RS02360	COG1309	transcriptional regulator
JR895_RS02370	COG2189	Belongs to the N(4) N(6)-methyltransferase family
JR895_RS02380	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JR895_RS02390	COG4145	pantothenate transmembrane transporter activity
JR895_RS02395	COG3924	membrane
JR895_RS02400	COG0439	Biotin carboxylase
JR895_RS02405	COG0511	ligase activity, forming carbon-carbon bonds
JR895_RS02410	COG0604	alcohol dehydrogenase
JR895_RS02415	COG2199	diguanylate cyclase activity
JR895_RS02415	COG2200	EAL domain
JR895_RS02420	COG1077	Cell shape determining protein MreB Mrl
JR895_RS02425	COG1792	Involved in formation and maintenance of cell shape
JR895_RS02430	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JR895_RS02440	COG1530	ribonuclease E activity
JR895_RS02445	COG3164	Protein of unknown function
JR895_RS02450	COG0312	modulator of DNA gyrase
JR895_RS02455	COG0583	DNA-binding transcription factor activity
JR895_RS02475	COG2732	(Barnase) inhibitor
JR895_RS02495	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JR895_RS02500	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JR895_RS02505	COG3105	Protein conserved in bacteria
JR895_RS02510	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JR895_RS02525	COG0625	glutathione transferase activity
JR895_RS02530	COG2969	positive regulation of protein catabolic process
JR895_RS02535	COG3069	C4-dicarboxylate transmembrane transporter activity
JR895_RS02565	COG2731	YhcH YjgK YiaL family protein
JR895_RS02570	COG4804	nuclease activity
JR895_RS02575	COG3539	Fimbrial protein
JR895_RS02585	COG3188	usher protein
JR895_RS02590	COG3121	Chaperone
JR895_RS02595	COG3539	Fimbrial protein
JR895_RS02600	COG0493	'glutamate synthase
JR895_RS02605	COG0070	glutamate synthase
JR895_RS02605	COG0067	glutamate synthase
JR895_RS02605	COG0069	glutamate synthase activity
JR895_RS02610	COG1242	4 iron, 4 sulfur cluster binding
JR895_RS02615	COG2198	Histidine kinase
JR895_RS02615	COG0784	Response regulator, receiver
JR895_RS02615	COG5002	protein histidine kinase activity
JR895_RS02620	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
JR895_RS02630	COG0515	serine threonine protein kinase
JR895_RS02635	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS02650	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JR895_RS02655	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JR895_RS02660	COG1137	ATPase activity
JR895_RS02665	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
JR895_RS02670	COG3117	lipopolysaccharide transmembrane transporter activity
JR895_RS02675	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
JR895_RS02680	COG0517	IMP dehydrogenase activity
JR895_RS02680	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JR895_RS02685	COG0530	calcium, potassium:sodium antiporter activity
JR895_RS02690	COG1127	ABC transporter
JR895_RS02695	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JR895_RS02700	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JR895_RS02705	COG2854	intermembrane phospholipid transfer
JR895_RS02710	COG3113	response to antibiotic
JR895_RS02715	COG5007	Belongs to the BolA IbaG family
JR895_RS02725	COG3423	Transcriptional regulator
JR895_RS02730	COG0142	geranyltranstransferase activity
JR895_RS02745	COG0697	spore germination
JR895_RS02755	COG2027	D-alanyl-D-alanine carboxypeptidase
JR895_RS02760	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JR895_RS02765	COG1534	Rna-binding protein
JR895_RS02775	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JR895_RS02780	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JR895_RS02790	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JR895_RS02800	COG2194	sulfuric ester hydrolase activity
JR895_RS02820	COG0195	Participates in both transcription termination and antitermination
JR895_RS02860	COG0513	Belongs to the DEAD box helicase family
JR895_RS02865	COG0814	amino acid
JR895_RS02870	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JR895_RS02875	COG0826	peptidase U32
JR895_RS02880	COG0826	peptidase U32
JR895_RS02885	COG3154	lipid carrier protein
JR895_RS02890	COG3153	acetyltransferase
JR895_RS02905	COG0693	protein deglycase activity
JR895_RS02910	COG0702	epimerase
JR895_RS02915	COG0701	Predicted permease
JR895_RS02920	COG2823	Periplasmic or secreted lipoprotein
JR895_RS02935	COG3107	peptidoglycan biosynthetic process
JR895_RS02940	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JR895_RS02945	COG3539	Fimbrial protein
JR895_RS02950	COG3188	usher protein
JR895_RS02955	COG3121	Chaperone
JR895_RS02960	COG3539	Fimbrial protein
JR895_RS02965	COG0363	glucosamine-6-phosphate deaminase activity
JR895_RS02970	COG3716	PTS system mannose fructose sorbose family IID component
JR895_RS02980	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS02990	COG2222	sugar isomerase
JR895_RS02995	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JR895_RS03000	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS03005	COG3716	PTS system mannose fructose sorbose family IID component
JR895_RS03015	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS03025	COG1349	DNA-binding transcription factor activity
JR895_RS03035	COG2002	toxin-antitoxin pair type II binding
JR895_RS03040	COG2721	sulfolactate sulfo-lyase activity
JR895_RS03045	COG2271	Major facilitator Superfamily
JR895_RS03055	COG2084	Dehydrogenase
JR895_RS03060	COG1929	Belongs to the glycerate kinase type-1 family
JR895_RS03085	COG0583	DNA-binding transcription factor activity
JR895_RS03090	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JR895_RS03100	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JR895_RS03105	COG1882	Formate acetyltransferase
JR895_RS03110	COG0251	oxidation-reduction process
JR895_RS03115	COG1760	l-serine dehydratase
JR895_RS03120	COG0814	amino acid
JR895_RS03135	COG1741	Belongs to the pirin family
JR895_RS03140	COG0583	DNA-binding transcription factor activity
JR895_RS03145	COG3152	Membrane
JR895_RS03150	COG3152	Membrane
JR895_RS03155	COG0435	Glutathione S-transferase
JR895_RS03160	COG2259	Doxx family
JR895_RS03170	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
JR895_RS03175	COG4575	ribosome binding
JR895_RS03180	COG1422	Protein of unknown function (DUF1090)
JR895_RS03190	COG0586	Pfam SNARE associated Golgi protein
JR895_RS03195	COG2186	Transcriptional regulator
JR895_RS03200	COG2271	Major facilitator Superfamily
JR895_RS03210	COG2721	sulfolactate sulfo-lyase activity
JR895_RS03220	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JR895_RS03225	COG0861	Integral membrane protein TerC family
JR895_RS03230	COG0673	inositol 2-dehydrogenase activity
JR895_RS03235	COG2949	membrane
JR895_RS03240	COG1451	nucleotide metabolic process
JR895_RS03250	COG4680	protein conserved in bacteria
JR895_RS03255	COG5499	transcription regulator containing HTH domain
JR895_RS03260	COG0446	pyridine nucleotide-disulphide oxidoreductase
JR895_RS03260	COG1902	pentaerythritol trinitrate reductase activity
JR895_RS03265	COG3408	Glycogen debranching enzyme
JR895_RS03265	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
JR895_RS03275	COG0531	amino acid
JR895_RS03280	COG2731	YhcH YjgK YiaL family protein
JR895_RS03285	COG3250	beta-galactosidase activity
JR895_RS03290	COG1609	Transcriptional regulator
JR895_RS03295	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JR895_RS03305	COG0840	transmembrane signaling receptor activity
JR895_RS03310	COG1695	Transcriptional regulator
JR895_RS03315	COG2375	cellular response to nickel ion
JR895_RS03330	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JR895_RS03335	COG0358	DNA primase activity
JR895_RS03340	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JR895_RS03350	COG0471	metal ion transport
JR895_RS03355	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JR895_RS03360	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JR895_RS03365	COG0583	DNA-binding transcription factor activity
JR895_RS03375	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JR895_RS03390	COG4991	sh3 domain protein
JR895_RS03395	COG3025	triphosphatase activity
JR895_RS03420	COG2268	Band 7 protein
JR895_RS03425	COG1585	Membrane protein implicated in regulation of membrane protease activity
JR895_RS03435	COG3539	Fimbrial protein
JR895_RS03445	COG3188	usher protein
JR895_RS03450	COG3539	Fimbrial protein
JR895_RS03455	COG2960	long-chain fatty acid transporting porin activity
JR895_RS03475	COG3384	dioxygenase
JR895_RS03480	COG0754	glutathionylspermidine amidase activity
JR895_RS03490	COG1538	Outer membrane efflux protein
JR895_RS03495	COG0494	nUDIX hydrolase
JR895_RS03500	COG3151	Protein conserved in bacteria
JR895_RS03505	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JR895_RS03510	COG3150	esterase
JR895_RS03515	COG0187	DNA topoisomerase II activity
JR895_RS03520	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
JR895_RS03525	COG2249	NAD(P)H dehydrogenase (quinone) activity
JR895_RS03535	COG0642	Histidine kinase
JR895_RS03540	COG0745	RESPONSE REGULATOR receiver
JR895_RS03545	COG3111	PFAM Bacterial OB fold (BOF) protein
JR895_RS03550	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
JR895_RS03560	COG2944	sequence-specific DNA binding
JR895_RS03565	COG4166	transmembrane transport
JR895_RS03570	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JR895_RS03575	COG0204	Acyl-transferase
JR895_RS03580	COG2132	Multicopper oxidase
JR895_RS03585	COG1032	radical SAM domain protein
JR895_RS03590	COG4238	major outer membrane lipoprotein
JR895_RS03600	COG0656	L-ascorbic acid biosynthetic process
JR895_RS03605	COG1979	alcohol dehydrogenase
JR895_RS03610	COG2207	Transcriptional regulator
JR895_RS03615	COG0586	Pfam SNARE associated Golgi protein
JR895_RS03620	COG0626	cystathionine gamma-synthase activity
JR895_RS03625	COG0811	peptide transport
JR895_RS03630	COG0848	biopolymer transport protein
JR895_RS03635	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS03645	COG0667	Aldo Keto reductase
JR895_RS03660	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
JR895_RS03665	COG0437	4 iron, 4 sulfur cluster binding
JR895_RS03670	COG5557	Pfam Polysulphide reductase, NrfD
JR895_RS03675	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
JR895_RS03680	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JR895_RS03685	COG1773	rubredoxin
JR895_RS03690	COG0375	protein maturation
JR895_RS03695	COG0298	carbon dioxide binding
JR895_RS03700	COG0625	glutathione transferase activity
JR895_RS03705	COG0754	glutathionylspermidine amidase activity
JR895_RS03710	COG0306	phosphate transporter
JR895_RS03715	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JR895_RS03720	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JR895_RS03725	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JR895_RS03730	COG2244	polysaccharide biosynthetic process
JR895_RS03740	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JR895_RS03745	COG0795	lipopolysaccharide-transporting ATPase activity
JR895_RS03755	COG0156	8-amino-7-oxononanoate synthase activity
JR895_RS03760	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JR895_RS03770	COG0318	PFAM AMP-dependent synthetase and ligase
JR895_RS03775	COG0456	acetyltransferase
JR895_RS03780	COG2186	Transcriptional regulator
JR895_RS03785	COG0277	FAD linked oxidase domain protein
JR895_RS03790	COG0277	FAD linked oxidase domain protein
JR895_RS03795	COG0247	lactate metabolic process
JR895_RS03800	COG3193	protein, possibly involved in utilization of glycolate and propanediol
JR895_RS03805	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JR895_RS03810	COG1620	l-lactate permease
JR895_RS03830	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
JR895_RS03840	COG1811	Na channel or pump
JR895_RS03845	COG1982	Orn Lys Arg decarboxylase major
JR895_RS03850	COG2211	Major facilitator Superfamily
JR895_RS03865	COG1194	a g-specific adenine glycosylase
JR895_RS03875	COG3171	Protein conserved in bacteria
JR895_RS03885	COG0252	asparaginase activity
JR895_RS03895	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JR895_RS03910	COG0762	integral membrane protein
JR895_RS03915	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JR895_RS03920	COG2805	Type II/IV secretion system protein
JR895_RS03935	COG0189	ligase activity
JR895_RS03940	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JR895_RS03945	COG2356	endonuclease I
JR895_RS03955	COG2814	Major facilitator Superfamily
JR895_RS03975	COG1166	arginine decarboxylase activity
JR895_RS03985	COG0501	Belongs to the peptidase M48B family
JR895_RS03990	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JR895_RS03995	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS04000	COG2213	PTS system mannitol-specific
JR895_RS04005	COG1063	alcohol dehydrogenase
JR895_RS04010	COG1494	fructose-1,6-bisphosphatase
JR895_RS04015	COG3722	fumarate hydratase activity
JR895_RS04020	COG1072	(Pantothenic acid kinase))
JR895_RS04035	COG0191	fructose-bisphosphate aldolase activity
JR895_RS04040	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS04045	COG0668	transmembrane transport
JR895_RS04055	COG2968	Membrane
JR895_RS04060	COG0583	DNA-binding transcription factor activity
JR895_RS04065	COG0427	acetyl-CoA hydrolase
JR895_RS04070	COG1024	Enoyl-CoA hydratase
JR895_RS04075	COG1703	isobutyryl-CoA mutase activity
JR895_RS04080	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JR895_RS04080	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
JR895_RS04100	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JR895_RS04110	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JR895_RS04130	COG0006	proline dipeptidase activity
JR895_RS04135	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JR895_RS04140	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JR895_RS04165	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS04170	COG2723	6-phospho-beta-galactosidase activity
JR895_RS04180	COG1272	protein, Hemolysin III
JR895_RS04190	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
JR895_RS04200	COG0716	FMN binding
JR895_RS04205	COG4974	Belongs to the 'phage' integrase family
JR895_RS04210	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JR895_RS04215	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JR895_RS04225	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JR895_RS04245	COG2233	PERMEase
JR895_RS04250	COG0493	'glutamate synthase
JR895_RS04250	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS04255	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS04260	COG2252	PERMEase
JR895_RS04265	COG0402	S-adenosylhomocysteine deaminase activity
JR895_RS04270	COG2233	PERMEase
JR895_RS04275	COG2080	2 iron, 2 sulfur cluster binding
JR895_RS04275	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JR895_RS04280	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JR895_RS04285	COG0402	S-adenosylhomocysteine deaminase activity
JR895_RS04290	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS04290	COG0493	'glutamate synthase
JR895_RS04295	COG2068	MobA-Related Protein
JR895_RS04300	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JR895_RS04305	COG3608	succinylglutamate desuccinylase aspartoacylase
JR895_RS04305	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JR895_RS04310	COG0549	Belongs to the carbamate kinase family
JR895_RS04320	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JR895_RS04325	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JR895_RS04330	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JR895_RS04335	COG3829	transcription factor binding
JR895_RS04340	COG2080	2 iron, 2 sulfur cluster binding
JR895_RS04350	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JR895_RS04355	COG4942	peptidase
JR895_RS04365	COG3387	PFAM Glycoside hydrolase 15-related
JR895_RS04450	COG2197	response regulator
JR895_RS04465	COG0457	Tetratricopeptide repeat
JR895_RS04465	COG3710	Transcriptional regulator
JR895_RS04470	COG0457	Tetratricopeptide repeat
JR895_RS04495	COG3710	Transcriptional regulator
JR895_RS04500	COG2771	luxR family
JR895_RS04505	COG0814	amino acid
JR895_RS04510	COG0183	Belongs to the thiolase family
JR895_RS04520	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS04525	COG2814	Major facilitator Superfamily
JR895_RS04530	COG1794	racemase activity, acting on amino acids and derivatives
JR895_RS04535	COG0583	DNA-binding transcription factor activity
JR895_RS04545	COG1609	Transcriptional regulator
JR895_RS04560	COG0667	Aldo Keto reductase
JR895_RS04570	COG0861	Integral membrane protein TerC family
JR895_RS04585	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
JR895_RS04600	COG2165	general secretion pathway protein
JR895_RS04605	COG4795	General secretion pathway protein
JR895_RS04615	COG4967	type IV pilus modification protein PilV
JR895_RS04620	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
JR895_RS04630	COG1074	ATP-dependent DNA helicase activity
JR895_RS04635	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JR895_RS04640	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JR895_RS04640	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JR895_RS04645	COG0860	N-Acetylmuramoyl-L-alanine amidase
JR895_RS04665	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
JR895_RS04670	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JR895_RS04675	COG2166	iron-sulfur cluster assembly
JR895_RS04680	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JR895_RS04690	COG0583	DNA-binding transcription factor activity
JR895_RS04695	COG2363	Small membrane protein
JR895_RS04705	COG1349	DNA-binding transcription factor activity
JR895_RS04715	COG1070	Carbohydrate kinase
JR895_RS04725	COG0738	Major facilitator superfamily
JR895_RS04730	COG0235	Class ii aldolase
JR895_RS04735	COG1454	alcohol dehydrogenase
JR895_RS04745	COG1760	l-serine dehydratase
JR895_RS04750	COG0814	amino acid
JR895_RS04755	COG1611	Belongs to the LOG family
JR895_RS04770	COG3098	single-species biofilm formation
JR895_RS04775	COG0564	pseudouridine synthase activity
JR895_RS04780	COG0716	FMN binding
JR895_RS04785	COG2271	Major facilitator Superfamily
JR895_RS04790	COG4948	Mandelate Racemase Muconate Lactonizing
JR895_RS04795	COG4948	Mandelate Racemase Muconate Lactonizing
JR895_RS04800	COG4999	Histidine kinase
JR895_RS04800	COG3437	response regulator, receiver
JR895_RS04800	COG2205	protein histidine kinase activity
JR895_RS04800	COG3850	Histidine kinase
JR895_RS04805	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JR895_RS04810	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JR895_RS04815	COG2336	PFAM SpoVT AbrB
JR895_RS04820	COG2337	Toxic component of a toxin-antitoxin (TA) module
JR895_RS04825	COG3956	TIGRFAM MazG family protein
JR895_RS04840	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JR895_RS04850	COG0602	queuosine metabolic process
JR895_RS04855	COG1070	Carbohydrate kinase
JR895_RS04860	COG2223	nitrite transmembrane transporter activity
JR895_RS04865	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS04870	COG0277	FAD linked oxidase domain protein
JR895_RS04875	COG0477	Major facilitator Superfamily
JR895_RS04880	COG2086	electron transfer activity
JR895_RS04885	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JR895_RS04890	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JR895_RS04895	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
JR895_RS04900	COG0644	oxidoreductase
JR895_RS04905	COG0720	synthase
JR895_RS04915	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JR895_RS04925	COG1203	CRISPR-associated helicase, Cas3
JR895_RS04940	COG1857	crispr-associated protein
JR895_RS04955	COG1518	maintenance of DNA repeat elements
JR895_RS04960	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JR895_RS04965	COG2234	aminopeptidase activity
JR895_RS05020	COG1388	LysM domain
JR895_RS05020	COG4942	peptidase
JR895_RS05025	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JR895_RS05030	COG2610	gluconate transmembrane transporter activity
JR895_RS05035	COG3622	Belongs to the hyi family
JR895_RS05040	COG0235	Class ii aldolase
JR895_RS05045	COG3395	kinase activity
JR895_RS05050	COG2084	Dehydrogenase
JR895_RS05055	COG1349	DNA-binding transcription factor activity
JR895_RS05060	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JR895_RS05080	COG3604	Transcriptional regulator
JR895_RS05085	COG0309	Hydrogenase expression formation protein (HypE)
JR895_RS05090	COG0409	Hydrogenase expression formation protein
JR895_RS05095	COG0298	carbon dioxide binding
JR895_RS05100	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
JR895_RS05105	COG0375	protein maturation
JR895_RS05115	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS05120	COG0651	ATP synthesis coupled electron transport
JR895_RS05125	COG0650	Formate hydrogenlyase subunit 4
JR895_RS05130	COG3261	NADH dehydrogenase
JR895_RS05130	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
JR895_RS05135	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JR895_RS05140	COG3260	NADH ubiquinone oxidoreductase 20
JR895_RS05150	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JR895_RS05155	COG2723	6-phospho-beta-galactosidase activity
JR895_RS05160	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS05160	COG1263	PTS System
JR895_RS05165	COG1609	Transcriptional regulator
JR895_RS05170	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS05175	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
JR895_RS05195	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JR895_RS05195	COG0517	IMP dehydrogenase activity
JR895_RS05200	COG1349	DNA-binding transcription factor activity
JR895_RS05205	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS05210	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS05215	COG3731	PTS system glucitol sorbitol-specific IIA component
JR895_RS05220	COG3732	PTS system glucitol sorbitol-specific
JR895_RS05225	COG3730	PTS system glucitol sorbitol-specific
JR895_RS05230	COG2951	lytic endotransglycosylase activity
JR895_RS05235	COG1546	Belongs to the CinA family
JR895_RS05255	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
JR895_RS05285	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JR895_RS05290	COG1238	metal cluster binding
JR895_RS05305	COG2814	Major facilitator Superfamily
JR895_RS05310	COG1566	PFAM secretion protein HlyD family protein
JR895_RS05315	COG1846	Transcriptional regulator
JR895_RS05325	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
JR895_RS05330	COG2814	Major facilitator Superfamily
JR895_RS05340	COG2113	Glycine betaine
JR895_RS05345	COG4176	ABC-type proline glycine betaine transport system permease component
JR895_RS05350	COG4175	Glycine betaine
JR895_RS05355	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JR895_RS05360	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JR895_RS05370	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JR895_RS05375	COG4575	ribosome binding
JR895_RS05390	COG2916	Histone family protein nucleoid-structuring protein H-NS
JR895_RS05395	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JR895_RS05400	COG0640	Transcriptional regulator
JR895_RS05405	COG0401	homolog of Blt101
JR895_RS05410	COG1652	LysM domain
JR895_RS05415	COG1802	Transcriptional regulator
JR895_RS05420	COG1113	amino acid transport
JR895_RS05425	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JR895_RS05430	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS05435	COG0579	oxidoreductase
JR895_RS05470	COG3468	outer membrane autotransporter barrel domain protein
JR895_RS05480	COG0210	DNA helicase
JR895_RS05570	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
JR895_RS05580	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
JR895_RS05590	COG0582	viral genome integration into host DNA
JR895_RS05605	COG2867	negative regulation of translational initiation
JR895_RS05615	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JR895_RS05620	COG0497	DNA recombination
JR895_RS05635	COG4536	flavin adenine dinucleotide binding
JR895_RS05640	COG4137	Cytochrome C assembly protein
JR895_RS05645	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JR895_RS05670	COG2885	chlorophyll binding
JR895_RS05675	COG2199	diguanylate cyclase activity
JR895_RS05690	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JR895_RS05695	COG1605	Chorismate mutase
JR895_RS05695	COG0287	Prephenate dehydrogenase
JR895_RS05700	COG0077	Prephenate dehydratase
JR895_RS05700	COG1605	Chorismate mutase
JR895_RS05710	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JR895_RS05715	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JR895_RS05720	COG0564	pseudouridine synthase activity
JR895_RS05725	COG1496	oxidoreductase activity
JR895_RS05730	COG0542	response to heat
JR895_RS05755	COG0477	Major facilitator Superfamily
JR895_RS05760	COG5544	Lipoprotein
JR895_RS05765	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JR895_RS05770	COG1042	CoA-binding domain protein
JR895_RS05770	COG0045	succinate-CoA ligase (ADP-forming) activity
JR895_RS05770	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JR895_RS05775	COG3148	PFAM DTW domain containing protein
JR895_RS05780	COG3118	belongs to the thioredoxin family
JR895_RS05785	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JR895_RS05805	COG0583	DNA-binding transcription factor activity
JR895_RS05810	COG0513	Belongs to the DEAD box helicase family
JR895_RS05820	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JR895_RS05830	COG1595	DNA-templated transcription, initiation
JR895_RS05835	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
JR895_RS05840	COG3026	antisigma factor binding
JR895_RS05845	COG3086	response to oxidative stress
JR895_RS05855	COG0681	Belongs to the peptidase S26 family
JR895_RS05875	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JR895_RS05890	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS05895	COG1737	Transcriptional regulator
JR895_RS05900	COG0560	Phosphoserine phosphatase
JR895_RS05915	COG0047	phosphoribosylformylglycinamidine synthase activity
JR895_RS05915	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JR895_RS05920	COG2205	protein histidine kinase activity
JR895_RS05925	COG3170	Tfp pilus assembly protein FimV
JR895_RS05930	COG2204	response regulator
JR895_RS05935	COG0347	Belongs to the P(II) protein family
JR895_RS05940	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JR895_RS05940	COG1017	nitric oxide dioxygenase activity
JR895_RS05950	COG1940	carbohydrate kinase activity
JR895_RS05955	COG0457	Tetratricopeptide repeat
JR895_RS05960	COG1879	ABC-type sugar transport system periplasmic component
JR895_RS05965	COG1129	ABC transporter
JR895_RS05970	COG1172	Belongs to the binding-protein-dependent transport system permease family
JR895_RS05975	COG1063	alcohol dehydrogenase
JR895_RS05980	COG2017	converts alpha-aldose to the beta-anomer
JR895_RS05985	COG2259	Doxx family
JR895_RS05990	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS06015	COG4638	Rieske (2fe-2S)
JR895_RS06020	COG0583	DNA-binding transcription factor activity
JR895_RS06025	COG2814	Major facilitator Superfamily
JR895_RS06030	COG3711	transcriptional antiterminator
JR895_RS06035	COG1073	alpha beta
JR895_RS06040	COG0483	inositol monophosphate 1-phosphatase activity
JR895_RS06060	COG0822	iron-sulfur transferase activity
JR895_RS06080	COG0633	Ferredoxin
JR895_RS06085	COG2975	iron-sulfur cluster assembly
JR895_RS06100	COG2897	thiosulfate sulfurtransferase activity
JR895_RS06105	COG2373	Large extracellular alpha-helical protein
JR895_RS06110	COG4953	penicillin-binding protein 1C
JR895_RS06140	COG2976	Protein conserved in bacteria
JR895_RS06155	COG1645	bacterial-type flagellum-dependent swarming motility
JR895_RS06165	COG0517	IMP dehydrogenase activity
JR895_RS06165	COG0516	GMP reductase activity
JR895_RS06180	COG3133	Outer membrane lipoprotein
JR895_RS06195	COG2200	EAL domain
JR895_RS06200	COG0248	Ppx GppA phosphatase
JR895_RS06205	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JR895_RS06210	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JR895_RS06225	COG2233	PERMEase
JR895_RS06235	COG1393	Belongs to the ArsC family
JR895_RS06240	COG4783	chaperone-mediated protein folding
JR895_RS06245	COG0628	permease
JR895_RS06250	COG2116	formate transmembrane transporter activity
JR895_RS06255	COG3604	Transcriptional regulator
JR895_RS06265	COG3260	NADH ubiquinone oxidoreductase 20
JR895_RS06270	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JR895_RS06275	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
JR895_RS06275	COG3261	NADH dehydrogenase
JR895_RS06280	COG0651	ATP synthesis coupled electron transport
JR895_RS06285	COG4237	Hydrogenase 4 membrane
JR895_RS06290	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JR895_RS06295	COG0650	Formate hydrogenlyase subunit 4
JR895_RS06305	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS06310	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JR895_RS06315	COG2716	regulation of RNA biosynthetic process
JR895_RS06325	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JR895_RS06335	COG2321	neutral zinc metallopeptidase
JR895_RS06345	COG0400	carboxylic ester hydrolase activity
JR895_RS06360	COG1393	Belongs to the ArsC family
JR895_RS06370	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JR895_RS06375	COG3850	Histidine kinase
JR895_RS06380	COG0493	'glutamate synthase
JR895_RS06380	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS06390	COG5342	invasion associated locus B
JR895_RS06395	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JR895_RS06400	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JR895_RS06405	COG0281	malic enzyme
JR895_RS06405	COG0280	phosphate acetyltransferase
JR895_RS06410	COG4810	utilization protein
JR895_RS06415	COG4917	ethanolamine utilization protein
JR895_RS06420	COG4766	ethanolamine catabolic process
JR895_RS06425	COG4812	Cobalamin adenosyltransferase
JR895_RS06430	COG0280	phosphate acetyltransferase
JR895_RS06435	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
JR895_RS06440	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
JR895_RS06445	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS06450	COG4820	ethanolamine utilization protein (EutJ)
JR895_RS06455	COG1454	alcohol dehydrogenase
JR895_RS06460	COG3192	ethanolamine utilization protein
JR895_RS06465	COG4819	ethanolamine utilization protein
JR895_RS06475	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JR895_RS06480	COG0531	amino acid
JR895_RS06485	COG0076	glutamate decarboxylase activity
JR895_RS06490	COG0076	glutamate decarboxylase activity
JR895_RS06530	COG2207	Transcriptional regulator
JR895_RS06540	COG0860	N-Acetylmuramoyl-L-alanine amidase
JR895_RS06560	COG2837	iron assimilation
JR895_RS06565	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JR895_RS06570	COG1263	PTS System
JR895_RS06570	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS06585	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS06590	COG4150	thiosulfate binding
JR895_RS06595	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JR895_RS06600	COG4208	sulfate ABC transporter
JR895_RS06605	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JR895_RS06610	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JR895_RS06625	COG2190	(PTS) system
JR895_RS06630	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JR895_RS06635	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS06640	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JR895_RS06660	COG3530	Putative quorum-sensing-regulated virulence factor
JR895_RS06665	COG0385	Bile acid
JR895_RS06670	COG0583	DNA-binding transcription factor activity
JR895_RS06680	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
JR895_RS06685	COG2211	Major facilitator Superfamily
JR895_RS06695	COG0583	DNA-binding transcription factor activity
JR895_RS06730	COG3415	Transposase
JR895_RS06735	COG3415	Transposase
JR895_RS06750	COG2199	diguanylate cyclase activity
JR895_RS06750	COG2200	EAL domain
JR895_RS06755	COG3385	transposase activity
JR895_RS06760	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JR895_RS06785	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS06790	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS06795	COG0006	proline dipeptidase activity
JR895_RS06800	COG1363	Peptidase, m42
JR895_RS06810	COG2207	Transcriptional regulator
JR895_RS06815	COG3279	Response regulator of the LytR AlgR family
JR895_RS06820	COG3275	phosphorelay sensor kinase activity
JR895_RS06825	COG0436	Aminotransferase
JR895_RS06835	COG1560	Kdo2-lipid A biosynthetic process
JR895_RS06860	COG0028	Belongs to the TPP enzyme family
JR895_RS06865	COG0679	Auxin Efflux Carrier
JR895_RS06870	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JR895_RS06875	COG2198	Histidine kinase
JR895_RS06875	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JR895_RS06875	COG0784	Response regulator, receiver
JR895_RS06875	COG2205	protein histidine kinase activity
JR895_RS06880	COG2197	response regulator
JR895_RS06885	COG1566	PFAM secretion protein HlyD family protein
JR895_RS06890	COG0477	Major facilitator Superfamily
JR895_RS06905	COG0583	DNA-binding transcription factor activity
JR895_RS06915	COG2116	formate transmembrane transporter activity
JR895_RS06920	COG2853	Lipoprotein
JR895_RS06930	COG2067	long-chain fatty acid transport protein
JR895_RS06935	COG3691	Protein conserved in bacteria
JR895_RS06950	COG2062	phosphohistidine phosphatase, SixA
JR895_RS06955	COG3539	Fimbrial protein
JR895_RS06960	COG3188	usher protein
JR895_RS06965	COG3121	Chaperone
JR895_RS06970	COG3539	Fimbrial protein
JR895_RS06975	COG3539	Fimbrial protein
JR895_RS06980	COG3539	Fimbrial protein
JR895_RS07010	COG0730	response to heat
JR895_RS07015	COG3101	peptidyl-lysine hydroxylation
JR895_RS07030	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JR895_RS07035	COG2814	Major facilitator Superfamily
JR895_RS07050	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JR895_RS07060	COG0586	Pfam SNARE associated Golgi protein
JR895_RS07070	COG0285	dihydrofolate synthase activity
JR895_RS07075	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
JR895_RS07080	COG1286	toxin biosynthetic process
JR895_RS07085	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JR895_RS07090	COG0163	prenyltransferase activity
JR895_RS07095	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JR895_RS07100	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JR895_RS07105	COG4215	(ABC) transporter
JR895_RS07110	COG4160	amino acid transport
JR895_RS07115	COG4598	ABC transporter
JR895_RS07120	COG5464	transposase or invertase
JR895_RS07125	COG1090	epimerase
JR895_RS07130	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JR895_RS07135	COG0625	glutathione transferase activity
JR895_RS07140	COG0625	glutathione transferase activity
JR895_RS07145	COG0622	Phosphoesterase
JR895_RS07150	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
JR895_RS07155	COG1288	antiporter activity
JR895_RS07160	COG0857	belongs to the CobB CobQ family
JR895_RS07160	COG0280	phosphate acetyltransferase
JR895_RS07165	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JR895_RS07180	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JR895_RS07185	COG0490	domain, Protein
JR895_RS07185	COG0471	metal ion transport
JR895_RS07195	COG0436	Aminotransferase
JR895_RS07200	COG0583	DNA-binding transcription factor activity
JR895_RS07220	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
JR895_RS07225	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
JR895_RS07230	COG1034	ATP synthesis coupled electron transport
JR895_RS07245	COG0839	Belongs to the complex I subunit 6 family
JR895_RS07255	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JR895_RS07260	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JR895_RS07290	COG2153	protein acetylation
JR895_RS07295	COG4575	ribosome binding
JR895_RS07300	COG1169	isochorismate synthase
JR895_RS07315	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JR895_RS07325	COG0318	PFAM AMP-dependent synthetase and ligase
JR895_RS07390	COG1414	Transcriptional regulator
JR895_RS07400	COG2271	Major facilitator Superfamily
JR895_RS07415	COG5464	transposase or invertase
JR895_RS07420	COG0247	lactate metabolic process
JR895_RS07430	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JR895_RS07435	COG2271	Major facilitator Superfamily
JR895_RS07440	COG0584	glycerophosphoryl diester phosphodiesterase
JR895_RS07450	COG3642	lipopolysaccharide core region biosynthetic process
JR895_RS07455	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JR895_RS07460	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JR895_RS07465	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JR895_RS07470	COG3468	outer membrane autotransporter barrel domain protein
JR895_RS07480	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JR895_RS07485	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
JR895_RS07490	COG3234	Protein of unknown function (DUF1175)
JR895_RS07495	COG2373	Large extracellular alpha-helical protein
JR895_RS07500	COG5445	Predicted secreted protein (DUF2300)
JR895_RS07505	COG4676	Protein conserved in bacteria
JR895_RS07510	COG0183	Belongs to the thiolase family
JR895_RS07515	COG2031	fatty acid transporter
JR895_RS07520	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JR895_RS07525	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JR895_RS07530	COG2204	response regulator
JR895_RS07535	COG3852	Histidine kinase
JR895_RS07540	COG2205	protein histidine kinase activity
JR895_RS07540	COG0784	Response regulator, receiver
JR895_RS07545	COG2197	response regulator
JR895_RS07550	COG0642	Histidine kinase
JR895_RS07550	COG2198	Histidine kinase
JR895_RS07555	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JR895_RS07560	COG1477	protein flavinylation
JR895_RS07565	COG2169	Transcriptional regulator
JR895_RS07565	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JR895_RS07570	COG3145	DNA-N1-methyladenine dioxygenase activity
JR895_RS07575	COG4615	Cyclic peptide transporter
JR895_RS07590	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS07590	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
JR895_RS07595	COG3062	negative regulation of establishment of protein localization
JR895_RS07605	COG0437	4 iron, 4 sulfur cluster binding
JR895_RS07610	COG0348	domain, Protein
JR895_RS07615	COG3043	anaerobic respiration
JR895_RS07620	COG3005	denitrification pathway
JR895_RS07625	COG4133	protoheme IX ABC transporter activity
JR895_RS07630	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JR895_RS07635	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JR895_RS07640	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JR895_RS07650	COG1138	Cytochrome C-type biogenesis protein
JR895_RS07655	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JR895_RS07660	COG3088	subunit of a heme lyase
JR895_RS07660	COG4235	cytochrome complex assembly
JR895_RS07665	COG2197	response regulator
JR895_RS07670	COG3468	outer membrane autotransporter barrel domain protein
JR895_RS07680	COG3083	sulfuric ester hydrolase activity
JR895_RS07700	COG1061	Type III restriction enzyme res subunit
JR895_RS07705	COG1187	pseudouridine synthase activity
JR895_RS07710	COG2814	Major facilitator Superfamily
JR895_RS07720	COG4172	Belongs to the ABC transporter superfamily
JR895_RS07725	COG4239	(ABC) transporter, permease
JR895_RS07730	COG4174	ABC transporter (Permease)
JR895_RS07735	COG4166	transmembrane transport
JR895_RS07740	COG2200	EAL domain
JR895_RS07745	COG0791	NLP P60 protein
JR895_RS07750	COG0671	phosphoesterase, PA-phosphatase related
JR895_RS07755	COG0523	cobalamin synthesis protein
JR895_RS07760	COG0246	Mannitol dehydrogenase
JR895_RS07775	COG2814	Major facilitator Superfamily
JR895_RS07780	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS07780	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS07785	COG1105	Belongs to the carbohydrate kinase PfkB family
JR895_RS07790	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
JR895_RS07790	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS07790	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS07795	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JR895_RS07800	COG2313	pseudouridylate synthase activity
JR895_RS07805	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JR895_RS07810	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JR895_RS07820	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JR895_RS07825	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JR895_RS07825	COG1522	sequence-specific DNA binding
JR895_RS07835	COG2855	membrane
JR895_RS07840	COG0583	DNA-binding transcription factor activity
JR895_RS07845	COG0833	amino acid
JR895_RS07850	COG4771	TonB-dependent receptor
JR895_RS07865	COG2311	Membrane
JR895_RS07870	COG1609	Transcriptional regulator
JR895_RS07875	COG1879	ABC-type sugar transport system periplasmic component
JR895_RS07880	COG1129	ABC transporter
JR895_RS07885	COG4211	Belongs to the binding-protein-dependent transport system permease family
JR895_RS07890	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
JR895_RS07890	COG0167	dihydroorotate dehydrogenase activity
JR895_RS07895	COG0493	'glutamate synthase
JR895_RS07905	COG2949	membrane
JR895_RS07915	COG1346	cytolysis
JR895_RS07925	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JR895_RS07940	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS07945	COG0586	Pfam SNARE associated Golgi protein
JR895_RS07955	COG1686	Belongs to the peptidase S11 family
JR895_RS07960	COG0277	FAD linked oxidase domain protein
JR895_RS07965	COG1472	Belongs to the glycosyl hydrolase 3 family
JR895_RS07970	COG1732	Glycine betaine
JR895_RS07975	COG1174	glycine betaine transport
JR895_RS07980	COG1125	glycine betaine transport
JR895_RS07985	COG1174	glycine betaine transport
JR895_RS07995	COG0789	Transcriptional regulator
JR895_RS08000	COG3275	phosphorelay sensor kinase activity
JR895_RS08005	COG3279	Response regulator of the LytR AlgR family
JR895_RS08010	COG4807	Protein conserved in bacteria
JR895_RS08015	COG4808	Protein conserved in bacteria
JR895_RS08020	COG4715	Zinc finger, swim domain protein
JR895_RS08025	COG3552	Protein containing von Willebrand factor type A (VWA) domain
JR895_RS08030	COG2425	protein containing a von Willebrand factor type A (vWA) domain
JR895_RS08035	COG0714	Associated with various cellular activities
JR895_RS08045	COG3831	ATPase activity
JR895_RS08050	COG3831	ATPase activity
JR895_RS08060	COG0489	protein tyrosine kinase activity
JR895_RS08070	COG3539	Fimbrial protein
JR895_RS08075	COG3121	Chaperone
JR895_RS08080	COG3188	usher protein
JR895_RS08100	COG5455	response to cobalt ion
JR895_RS08120	COG0351	phosphomethylpyrimidine kinase
JR895_RS08125	COG3757	hydrolase, family 25
JR895_RS08130	COG2188	Transcriptional regulator
JR895_RS08135	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JR895_RS08140	COG1397	ADP-ribosylglycohydrolase
JR895_RS08145	COG2211	Major facilitator Superfamily
JR895_RS08150	COG1830	Aldolase
JR895_RS08165	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS08170	COG3414	Phosphotransferase system galactitol-specific IIB component
JR895_RS08175	COG3775	system Galactitol-specific IIC component
JR895_RS08180	COG1063	alcohol dehydrogenase
JR895_RS08200	COG0826	peptidase U32
JR895_RS08210	COG3609	addiction module antidote protein, CC2985 family
JR895_RS08220	COG0745	RESPONSE REGULATOR receiver
JR895_RS08225	COG2205	protein histidine kinase activity
JR895_RS08265	COG4245	von Willebrand factor, type A
JR895_RS08270	COG0631	protein serine/threonine phosphatase activity
JR895_RS08275	COG4248	protein with protein kinase and helix-hairpin-helix DNA-binding domains
JR895_RS08280	COG0443	Heat shock 70 kDa protein
JR895_RS08285	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JR895_RS08290	COG3447	MASE1 domain protein
JR895_RS08290	COG5001	Diguanylate cyclase
JR895_RS08290	COG5002	protein histidine kinase activity
JR895_RS08295	COG0572	uridine kinase
JR895_RS08305	COG2982	Protein involved in outer membrane biogenesis
JR895_RS08310	COG1253	flavin adenine dinucleotide binding
JR895_RS08315	COG1596	polysaccharide export
JR895_RS08320	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JR895_RS08325	COG0489	protein tyrosine kinase activity
JR895_RS08325	COG3206	protein involved in exopolysaccharide biosynthesis
JR895_RS08330	COG0463	Glycosyl transferase, family 2
JR895_RS08335	COG1045	serine acetyltransferase
JR895_RS08340	COG0438	transferase activity, transferring glycosyl groups
JR895_RS08350	COG1216	Glycosyl transferase, family 2
JR895_RS08355	COG0110	maltose O-acetyltransferase activity
JR895_RS08360	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
JR895_RS08365	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JR895_RS08370	COG1051	belongs to the nudix hydrolase family
JR895_RS08375	COG0297	glycogen (starch) synthase activity
JR895_RS08380	COG0662	Cupin 2, conserved barrel domain protein
JR895_RS08380	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
JR895_RS08385	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JR895_RS08390	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JR895_RS08395	COG2244	polysaccharide biosynthetic process
JR895_RS08400	COG2327	Polysaccharide pyruvyl transferase
JR895_RS08405	COG0438	transferase activity, transferring glycosyl groups
JR895_RS08415	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JR895_RS08420	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JR895_RS08455	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JR895_RS08460	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JR895_RS08485	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JR895_RS08490	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JR895_RS08490	COG0131	Imidazoleglycerol-phosphate dehydratase
JR895_RS08500	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JR895_RS08515	COG2161	toxin-antitoxin pair type II binding
JR895_RS08520	COG4115	mRNA cleavage
JR895_RS08525	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JR895_RS08530	COG0583	DNA-binding transcription factor activity
JR895_RS08540	COG0531	amino acid
JR895_RS08545	COG2391	methyltransferase activity
JR895_RS08550	COG0425	Belongs to the sulfur carrier protein TusA family
JR895_RS08555	COG2925	Exonuclease
JR895_RS08560	COG1686	Belongs to the peptidase S11 family
JR895_RS08570	COG1289	transmembrane transporter activity
JR895_RS08615	COG2003	Belongs to the UPF0758 family
JR895_RS08680	COG3436	PFAM IS66 Orf2 family protein
JR895_RS08725	COG1735	metal-dependent hydrolase with the TIM-barrel fold
JR895_RS08745	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JR895_RS08755	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
JR895_RS08770	COG1376	ErfK ybiS ycfS ynhG family protein
JR895_RS08780	COG0583	DNA-binding transcription factor activity
JR895_RS08785	COG0583	DNA-binding transcription factor activity
JR895_RS08795	COG0534	Mate efflux family protein
JR895_RS08805	COG0217	transcriptional regulatory protein
JR895_RS08810	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JR895_RS08815	COG0477	Major facilitator Superfamily
JR895_RS08845	COG3038	cytochrome b561
JR895_RS08850	COG3443	Belongs to the bacterial solute-binding protein 9 family
JR895_RS08865	COG2351	hydroxyisourate hydrolase activity
JR895_RS08870	COG0745	RESPONSE REGULATOR receiver
JR895_RS08875	COG2205	protein histidine kinase activity
JR895_RS08890	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS08910	COG1418	mRNA catabolic process
JR895_RS08915	COG0270	DNA (cytosine-5-)-methyltransferase activity
JR895_RS08920	COG3727	T/G mismatch-specific endonuclease activity
JR895_RS08925	COG0697	spore germination
JR895_RS08930	COG2354	Protein conserved in bacteria
JR895_RS08935	COG5475	Uncharacterized small protein (DUF2158)
JR895_RS08940	COG3706	GGDEF domain
JR895_RS08960	COG2197	response regulator
JR895_RS08965	COG1684	flagellar biosynthetic protein fliR
JR895_RS08970	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS08985	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS09000	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS09005	COG1987	bacterial-type flagellum assembly
JR895_RS09010	COG1338	Plays a role in the flagellum-specific transport system
JR895_RS09015	COG3190	flagellar
JR895_RS09020	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JR895_RS09025	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JR895_RS09030	COG1580	Controls the rotational direction of flagella during chemotaxis
JR895_RS09035	COG3144	bacterial-type flagellum assembly
JR895_RS09040	COG2882	bacterial-type flagellum organization
JR895_RS09045	COG1157	protein secretion by the type III secretion system
JR895_RS09050	COG1317	bacterial-type flagellum organization
JR895_RS09055	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JR895_RS09060	COG1766	The M ring may be actively involved in energy transduction
JR895_RS09070	COG2135	peptidase activity
JR895_RS09075	COG0425	Belongs to the sulfur carrier protein TusA family
JR895_RS09080	COG2391	methyltransferase activity
JR895_RS09090	COG0366	Alpha amylase catalytic
JR895_RS09100	COG1516	flagellar protein fliS
JR895_RS09105	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JR895_RS09115	COG1191	sigma factor activity
JR895_RS09125	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JR895_RS09135	COG0765	amino acid transport
JR895_RS09140	COG1126	abc transporter atp-binding protein
JR895_RS09145	COG2197	response regulator
JR895_RS09160	COG2197	response regulator
JR895_RS09285	COG3318	Belongs to the UPF0149 family
JR895_RS09285	COG3012	SEC-C Motif Domain Protein
JR895_RS09295	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
JR895_RS09335	COG3318	Belongs to the UPF0149 family
JR895_RS09335	COG3012	SEC-C Motif Domain Protein
JR895_RS09340	COG0814	amino acid
JR895_RS09350	COG1528	Iron-storage protein
JR895_RS09370	COG1528	Iron-storage protein
JR895_RS09375	COG1879	ABC-type sugar transport system periplasmic component
JR895_RS09380	COG1129	ABC transporter
JR895_RS09385	COG1172	Belongs to the binding-protein-dependent transport system permease family
JR895_RS09390	COG1877	trehalose-phosphatase activity
JR895_RS09400	COG0589	response to stress
JR895_RS09415	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JR895_RS09420	COG1360	Flagellar Motor Protein
JR895_RS09425	COG2198	Histidine kinase
JR895_RS09425	COG0643	Histidine kinase
JR895_RS09430	COG0835	chemotaxis
JR895_RS09435	COG0840	transmembrane signaling receptor activity
JR895_RS09440	COG0840	transmembrane signaling receptor activity
JR895_RS09445	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JR895_RS09450	COG2201	protein-glutamate methylesterase activity
JR895_RS09455	COG0745	RESPONSE REGULATOR receiver
JR895_RS09460	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
JR895_RS09465	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JR895_RS09470	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JR895_RS09480	COG3755	Protein conserved in bacteria
JR895_RS09490	COG3102	Protein conserved in bacteria
JR895_RS09500	COG3005	denitrification pathway
JR895_RS09505	COG0243	molybdopterin cofactor binding
JR895_RS09520	COG3788	relative of glutathione S-transferase, MAPEG superfamily
JR895_RS09525	COG1801	Protein of unknown function DUF72
JR895_RS09530	COG1335	isochorismatase
JR895_RS09540	COG0494	nUDIX hydrolase
JR895_RS09545	COG0217	transcriptional regulatory protein
JR895_RS09575	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JR895_RS09585	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
JR895_RS09590	COG0739	heme binding
JR895_RS09595	COG1560	Kdo2-lipid A biosynthetic process
JR895_RS09600	COG0469	pyruvate kinase activity
JR895_RS09605	COG1737	Transcriptional regulator
JR895_RS09610	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JR895_RS09615	COG0129	dihydroxy-acid dehydratase activity
JR895_RS09620	COG0800	Aldolase
JR895_RS09630	COG3141	response to X-ray
JR895_RS09640	COG2979	Protein of unknown function (DUF533)
JR895_RS09645	COG1770	oligopeptidase
JR895_RS09650	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JR895_RS09655	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JR895_RS09665	COG2372	response to copper ion
JR895_RS09670	COG1276	copper resistance
JR895_RS09680	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JR895_RS09700	COG3008	intermembrane lipid transfer
JR895_RS09705	COG2995	paraquat-inducible protein a
JR895_RS09710	COG1956	GAF domain-containing protein
JR895_RS09720	COG0793	Belongs to the peptidase S41A family
JR895_RS09730	COG2814	Major facilitator Superfamily
JR895_RS09735	COG1414	Transcriptional regulator
JR895_RS09765	COG2226	methyltransferase
JR895_RS09780	COG3716	PTS system mannose fructose sorbose family IID component
JR895_RS09785	COG3715	PTS system
JR895_RS09790	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS09790	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS09795	COG1253	flavin adenine dinucleotide binding
JR895_RS09800	COG2200	EAL domain
JR895_RS09805	COG1760	l-serine dehydratase
JR895_RS09815	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JR895_RS09830	COG0251	oxidation-reduction process
JR895_RS09835	COG1199	ATP-dependent helicase activity
JR895_RS09840	COG1214	PFAM Peptidase M22, glycoprotease
JR895_RS09845	COG3065	identical protein binding
JR895_RS09850	COG0318	PFAM AMP-dependent synthetase and ligase
JR895_RS09855	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
JR895_RS09860	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JR895_RS09865	COG4638	Rieske (2fe-2S)
JR895_RS09875	COG0473	3-isopropylmalate dehydrogenase activity
JR895_RS09880	COG0583	DNA-binding transcription factor activity
JR895_RS09890	COG3615	Tellurite resistance protein tehB
JR895_RS09900	COG2261	transglycosylase associated protein
JR895_RS09915	COG2203	Gaf domain
JR895_RS09915	COG2199	diguanylate cyclase activity
JR895_RS09920	COG3042	response to heat
JR895_RS09925	COG3189	MarR family transcriptional regulator
JR895_RS09930	COG2807	transmembrane transport
JR895_RS09935	COG2207	Transcriptional regulator
JR895_RS09950	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JR895_RS09955	COG2199	diguanylate cyclase activity
JR895_RS09960	COG2199	diguanylate cyclase activity
JR895_RS09970	COG2766	serine protein kinase
JR895_RS09975	COG3713	MltA-interacting MipA family protein
JR895_RS09980	COG0656	L-ascorbic acid biosynthetic process
JR895_RS09985	COG0676	glucose-6-phosphate 1-epimerase activity
JR895_RS09990	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JR895_RS10000	COG3139	Protein of unknown function (DUF1315)
JR895_RS10005	COG1063	alcohol dehydrogenase
JR895_RS10010	COG2271	Major facilitator Superfamily
JR895_RS10015	COG1063	alcohol dehydrogenase
JR895_RS10020	COG0191	fructose-bisphosphate aldolase activity
JR895_RS10025	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JR895_RS10030	COG0667	Aldo Keto reductase
JR895_RS10035	COG1349	DNA-binding transcription factor activity
JR895_RS10040	COG2814	Major facilitator Superfamily
JR895_RS10045	COG1335	isochorismatase
JR895_RS10050	COG0252	asparaginase activity
JR895_RS10055	COG0616	signal peptide processing
JR895_RS10060	COG0778	Nitroreductase
JR895_RS10070	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JR895_RS10080	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JR895_RS10090	COG0494	nUDIX hydrolase
JR895_RS10095	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JR895_RS10100	COG2897	thiosulfate sulfurtransferase activity
JR895_RS10105	COG4136	ATPase activity
JR895_RS10110	COG4135	transport system, permease component
JR895_RS10115	COG4134	Bacterial extracellular solute-binding protein
JR895_RS10120	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JR895_RS10125	COG0398	Pfam SNARE associated Golgi protein
JR895_RS10135	COG0398	Pfam SNARE associated Golgi protein
JR895_RS10140	COG0708	Exodeoxyribonuclease III
JR895_RS10170	COG3678	ATP-independent chaperone mediated protein folding
JR895_RS10180	COG0322	excinuclease ABC activity
JR895_RS10190	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JR895_RS10195	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JR895_RS10230	COG0640	Transcriptional regulator
JR895_RS10245	COG0786	glutamate:sodium symporter activity
JR895_RS10265	COG1447	Phosphotransferase system cellobiose-specific component IIA
JR895_RS10270	COG1917	Cupin 2, conserved barrel domain protein
JR895_RS10270	COG2169	Transcriptional regulator
JR895_RS10275	COG1486	melibiose metabolic process
JR895_RS10285	COG0753	catalase activity
JR895_RS10300	COG1823	symporter activity
JR895_RS10305	COG1988	membrane-bound metal-dependent
JR895_RS10310	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JR895_RS10320	COG3001	Fructosamine kinase
JR895_RS10330	COG1105	Belongs to the carbohydrate kinase PfkB family
JR895_RS10335	COG3137	Salt-induced outer membrane protein
JR895_RS10380	COG0072	phenylalanine-tRNA ligase activity
JR895_RS10380	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JR895_RS10395	COG0386	Belongs to the glutathione peroxidase family
JR895_RS10405	COG0791	NLP P60 protein
JR895_RS10410	COG2200	EAL domain
JR895_RS10420	COG4256	Hemin uptake protein
JR895_RS10425	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JR895_RS10435	COG0574	Belongs to the PEP-utilizing enzyme family
JR895_RS10435	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JR895_RS10440	COG0318	PFAM AMP-dependent synthetase and ligase
JR895_RS10445	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
JR895_RS10450	COG0644	oxidoreductase
JR895_RS10455	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JR895_RS10460	COG2086	electron transfer activity
JR895_RS10465	COG1917	Cupin 2, conserved barrel domain protein
JR895_RS10465	COG2207	Transcriptional regulator
JR895_RS10470	COG1917	Cupin 2, conserved barrel domain protein
JR895_RS10470	COG2207	Transcriptional regulator
JR895_RS10475	COG1960	acyl-CoA dehydrogenase activity
JR895_RS10480	COG4670	ketone body catabolic process
JR895_RS10495	COG2271	Major facilitator Superfamily
JR895_RS10500	COG0738	Major facilitator superfamily
JR895_RS10515	COG0628	permease
JR895_RS10520	COG0247	lactate metabolic process
JR895_RS10520	COG0277	FAD linked oxidase domain protein
JR895_RS10525	COG2050	protein possibly involved in aromatic compounds catabolism
JR895_RS10535	COG0316	Belongs to the HesB IscA family
JR895_RS10540	COG0719	Fe-S assembly protein
JR895_RS10545	COG0396	ATPase activity
JR895_RS10550	COG0719	Fe-S assembly protein
JR895_RS10565	COG1376	ErfK ybiS ycfS ynhG family protein
JR895_RS10570	COG4238	major outer membrane lipoprotein
JR895_RS10575	COG0469	pyruvate kinase activity
JR895_RS10585	COG0437	4 iron, 4 sulfur cluster binding
JR895_RS10590	COG2414	aldehyde ferredoxin oxidoreductase
JR895_RS10600	COG0437	4 iron, 4 sulfur cluster binding
JR895_RS10605	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
JR895_RS10615	COG4529	Protein conserved in bacteria
JR895_RS10635	COG3468	outer membrane autotransporter barrel domain protein
JR895_RS10645	COG0307	riboflavin synthase, alpha
JR895_RS10650	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JR895_RS10655	COG2814	Major facilitator Superfamily
JR895_RS10660	COG0583	DNA-binding transcription factor activity
JR895_RS10675	COG2814	Major facilitator Superfamily
JR895_RS10680	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JR895_RS10685	COG0791	NLP P60 protein
JR895_RS10690	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JR895_RS10705	COG0346	lactoylglutathione lyase activity
JR895_RS10710	COG1902	pentaerythritol trinitrate reductase activity
JR895_RS10715	COG1309	transcriptional regulator
JR895_RS10720	COG3313	Fe-S protein
JR895_RS10725	COG4989	oxidoreductase activity
JR895_RS10730	COG2032	superoxide dismutase activity
JR895_RS10735	COG1289	transmembrane transporter activity
JR895_RS10740	COG1566	PFAM secretion protein HlyD family protein
JR895_RS10755	COG3133	Outer membrane lipoprotein
JR895_RS10765	COG3895	Periplasmic Protein
JR895_RS10780	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JR895_RS10785	COG0625	glutathione transferase activity
JR895_RS10790	COG3104	oligopeptide transport
JR895_RS10795	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JR895_RS10805	COG4659	FMN binding
JR895_RS10845	COG0673	inositol 2-dehydrogenase activity
JR895_RS10855	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JR895_RS10860	COG1263	PTS System
JR895_RS10860	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS10865	COG1609	Transcriptional regulator
JR895_RS10870	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS10875	COG1309	transcriptional regulator
JR895_RS10880	COG3250	beta-galactosidase activity
JR895_RS10895	COG5339	Protein conserved in bacteria
JR895_RS10900	COG1482	cell wall glycoprotein biosynthetic process
JR895_RS10905	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JR895_RS10905	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JR895_RS10910	COG0114	fumarate hydratase activity
JR895_RS10920	COG2205	protein histidine kinase activity
JR895_RS10925	COG0745	RESPONSE REGULATOR receiver
JR895_RS10930	COG3136	membrane protein required for alginate biosynthesis
JR895_RS10940	COG0531	amino acid
JR895_RS10950	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JR895_RS10955	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
JR895_RS10960	COG0628	permease
JR895_RS10975	COG3591	Belongs to the peptidase S1B family
JR895_RS10990	COG2814	Major facilitator Superfamily
JR895_RS10995	COG0583	DNA-binding transcription factor activity
JR895_RS11000	COG1940	carbohydrate kinase activity
JR895_RS11005	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JR895_RS11015	COG3381	protein complex oligomerization
JR895_RS11020	COG3302	dmso reductase anchor subunit
JR895_RS11025	COG0437	4 iron, 4 sulfur cluster binding
JR895_RS11030	COG0243	molybdopterin cofactor binding
JR895_RS11035	COG0243	molybdopterin cofactor binding
JR895_RS11050	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JR895_RS11065	COG4948	Mandelate Racemase Muconate Lactonizing
JR895_RS11070	COG1063	alcohol dehydrogenase
JR895_RS11080	COG0582	viral genome integration into host DNA
JR895_RS11090	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JR895_RS11170	COG1403	HNH endonuclease
JR895_RS11175	COG0484	heat shock protein binding
JR895_RS11185	COG1278	Cold shock
JR895_RS11200	COG3772	lysozyme
JR895_RS11210	COG1278	Cold shock
JR895_RS11235	COG5562	phage envelope protein
JR895_RS11265	COG0740	serine-type endopeptidase activity
JR895_RS11340	COG5301	cellulose 1,4-beta-cellobiosidase activity
JR895_RS11345	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
JR895_RS11350	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JR895_RS11370	COG0246	Mannitol dehydrogenase
JR895_RS11380	COG1802	Transcriptional regulator
JR895_RS11385	COG4221	oxidoreductase activity
JR895_RS11390	COG0339	signal peptide processing
JR895_RS11395	COG1546	Belongs to the CinA family
JR895_RS11400	COG3111	PFAM Bacterial OB fold (BOF) protein
JR895_RS11405	COG3706	GGDEF domain
JR895_RS11415	COG2814	Major facilitator Superfamily
JR895_RS11420	COG0697	spore germination
JR895_RS11425	COG2188	Transcriptional regulator
JR895_RS11435	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JR895_RS11440	COG1447	Phosphotransferase system cellobiose-specific component IIA
JR895_RS11450	COG2723	6-phospho-beta-galactosidase activity
JR895_RS11460	COG4977	sequence-specific DNA binding
JR895_RS11465	COG1846	Transcriptional regulator
JR895_RS11485	COG0583	DNA-binding transcription factor activity
JR895_RS11490	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS11495	COG2066	Belongs to the glutaminase family
JR895_RS11505	COG2199	diguanylate cyclase activity
JR895_RS11515	COG3781	membrane
JR895_RS11575	COG1396	sequence-specific DNA binding
JR895_RS11580	COG3550	peptidyl-serine autophosphorylation
JR895_RS11595	COG3539	Fimbrial protein
JR895_RS11600	COG3539	Fimbrial protein
JR895_RS11605	COG3539	Fimbrial protein
JR895_RS11610	COG0243	molybdopterin cofactor binding
JR895_RS11625	COG3119	arylsulfatase activity
JR895_RS11630	COG0641	radical SAM
JR895_RS11640	COG4178	(ABC) transporter
JR895_RS11645	COG4771	TonB-dependent receptor
JR895_RS11650	COG0612	Peptidase, M16
JR895_RS11655	COG0076	glutamate decarboxylase activity
JR895_RS11660	COG0531	amino acid
JR895_RS11665	COG1649	PFAM Uncharacterised BCR, COG1649
JR895_RS11675	COG3706	GGDEF domain
JR895_RS11680	COG2202	Pas domain
JR895_RS11680	COG2200	EAL domain
JR895_RS11680	COG2199	diguanylate cyclase activity
JR895_RS11685	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
JR895_RS11690	COG0747	negative chemotaxis
JR895_RS11695	COG0601	transmembrane transport
JR895_RS11700	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JR895_RS11705	COG0444	Belongs to the ABC transporter superfamily
JR895_RS11710	COG4608	Belongs to the ABC transporter superfamily
JR895_RS11715	COG1764	response to oxidative stress
JR895_RS11735	COG1064	alcohol dehydrogenase
JR895_RS11740	COG3093	addiction module antidote protein HigA
JR895_RS11745	COG2864	formate dehydrogenase
JR895_RS11750	COG0437	4 iron, 4 sulfur cluster binding
JR895_RS11760	COG0697	spore germination
JR895_RS11765	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JR895_RS11775	COG2223	nitrite transmembrane transporter activity
JR895_RS11780	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JR895_RS11785	COG1140	nitrate reductase beta subunit
JR895_RS11790	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JR895_RS11795	COG2181	nitrate reductase activity
JR895_RS11800	COG0384	phenazine biosynthesis protein PhzF
JR895_RS11805	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JR895_RS11810	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JR895_RS11820	COG5433	transposase activity
JR895_RS11840	COG3209	COG3209 Rhs family protein
JR895_RS11850	COG0625	glutathione transferase activity
JR895_RS11855	COG1113	amino acid transport
JR895_RS11860	COG3391	amine dehydrogenase activity
JR895_RS11865	COG4772	TonB-dependent receptor
JR895_RS11870	COG1802	Transcriptional regulator
JR895_RS11875	COG2130	NADP-dependent
JR895_RS11880	COG1247	-acetyltransferase
JR895_RS11885	COG3238	Protein conserved in bacteria
JR895_RS11915	COG1177	transmembrane transport
JR895_RS11920	COG1176	ABC-type spermidine putrescine transport system, permease component I
JR895_RS11925	COG3842	ATPase activity
JR895_RS11930	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JR895_RS11935	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JR895_RS11940	COG1598	PFAM Uncharacterised protein family UPF0150
JR895_RS11945	COG1724	mRNA binding
JR895_RS11955	COG0826	peptidase U32
JR895_RS11960	COG1396	sequence-specific DNA binding
JR895_RS11965	COG3135	benzoate transporter
JR895_RS11970	COG0675	Transposase, IS605 OrfB family
JR895_RS11985	COG0500	methyltransferase
JR895_RS11990	COG1275	C4-dicarboxylate transporter malic acid transport protein
JR895_RS11995	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JR895_RS12000	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JR895_RS12005	COG2841	Protein conserved in bacteria
JR895_RS12015	COG5383	Protein conserved in bacteria
JR895_RS12020	COG0583	DNA-binding transcription factor activity
JR895_RS12025	COG0840	transmembrane signaling receptor activity
JR895_RS12045	COG3038	cytochrome b561
JR895_RS12055	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS12060	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JR895_RS12065	COG1643	Atp-dependent helicase
JR895_RS12075	COG0671	phosphoesterase, PA-phosphatase related
JR895_RS12075	COG2453	phosphatase
JR895_RS12095	COG0667	Aldo Keto reductase
JR895_RS12100	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JR895_RS12105	COG3327	negative regulation of DNA-templated transcription, initiation
JR895_RS12110	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
JR895_RS12115	COG0183	Belongs to the thiolase family
JR895_RS12120	COG2050	protein possibly involved in aromatic compounds catabolism
JR895_RS12125	COG1250	3-hydroxyacyl-CoA dehydrogenase
JR895_RS12130	COG1024	Enoyl-CoA hydratase
JR895_RS12135	COG1024	Enoyl-CoA hydratase
JR895_RS12140	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JR895_RS12145	COG2151	metal-sulfur cluster biosynthetic enzyme
JR895_RS12150	COG3396	Phenylacetate-CoA oxygenase
JR895_RS12155	COG3460	Phenylacetate-CoA oxygenase
JR895_RS12160	COG3396	Phenylacetate-CoA oxygenase
JR895_RS12165	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS12165	COG2030	dehydratase
JR895_RS12170	COG3733	amine oxidase
JR895_RS12175	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS12180	COG2207	Transcriptional regulator
JR895_RS12185	COG3784	Protein of unknown function (DUF1318)
JR895_RS12195	COG2911	Protein conserved in bacteria
JR895_RS12200	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JR895_RS12205	COG3187	Heat shock protein
JR895_RS12210	COG3042	response to heat
JR895_RS12215	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JR895_RS12215	COG1013	pyruvate-flavodoxin oxidoreductase activity
JR895_RS12215	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JR895_RS12215	COG0674	pyruvate-flavodoxin oxidoreductase activity
JR895_RS12220	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JR895_RS12225	COG0589	response to stress
JR895_RS12235	COG0513	Belongs to the DEAD box helicase family
JR895_RS12245	COG3706	GGDEF domain
JR895_RS12250	COG2840	Smr protein MutS2
JR895_RS12255	COG0583	DNA-binding transcription factor activity
JR895_RS12260	COG1473	amidohydrolase
JR895_RS12270	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JR895_RS12275	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JR895_RS12280	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JR895_RS12285	COG0589	response to stress
JR895_RS12290	COG3182	Iron-regulated membrane protein
JR895_RS12295	COG0668	transmembrane transport
JR895_RS12300	COG4166	transmembrane transport
JR895_RS12305	COG0583	DNA-binding transcription factor activity
JR895_RS12310	COG1073	alpha beta
JR895_RS12320	COG2866	Carboxypeptidase
JR895_RS12325	COG4948	Mandelate Racemase Muconate Lactonizing
JR895_RS12330	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JR895_RS12335	COG3283	Transcriptional regulator of aromatic amino acids metabolism
JR895_RS12345	COG3106	COG3106 Predicted ATPase
JR895_RS12350	COG1609	Transcriptional regulator
JR895_RS12360	COG3842	ATPase activity
JR895_RS12370	COG1554	hydrolase, family 65, central catalytic
JR895_RS12375	COG0673	inositol 2-dehydrogenase activity
JR895_RS12380	COG1082	Xylose isomerase domain protein TIM barrel
JR895_RS12390	COG0395	ABC-type sugar transport system, permease component
JR895_RS12395	COG1175	transmembrane transport
JR895_RS12400	COG1653	transport
JR895_RS12405	COG0366	Alpha amylase catalytic
JR895_RS12410	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JR895_RS12420	COG1983	PspC domain protein
JR895_RS12430	COG1842	Phage shock protein A
JR895_RS12435	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JR895_RS12445	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JR895_RS12450	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS12455	COG1396	sequence-specific DNA binding
JR895_RS12455	COG1917	Cupin 2, conserved barrel domain protein
JR895_RS12460	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JR895_RS12475	COG0531	amino acid
JR895_RS12485	COG4166	transmembrane transport
JR895_RS12490	COG4168	peptide transport system, permease
JR895_RS12495	COG4171	peptide transport system, permease
JR895_RS12500	COG4172	Belongs to the ABC transporter superfamily
JR895_RS12505	COG4172	Belongs to the ABC transporter superfamily
JR895_RS12510	COG2852	Protein conserved in bacteria
JR895_RS12515	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JR895_RS12520	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JR895_RS12520	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JR895_RS12535	COG5001	Diguanylate cyclase
JR895_RS12545	COG1349	DNA-binding transcription factor activity
JR895_RS12555	COG0023	Translation Initiation Factor
JR895_RS12565	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JR895_RS12570	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
JR895_RS12575	COG0671	phosphoesterase, PA-phosphatase related
JR895_RS12585	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JR895_RS12605	COG0583	DNA-binding transcription factor activity
JR895_RS12610	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JR895_RS12620	COG0616	signal peptide processing
JR895_RS12625	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS12630	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
JR895_RS12635	COG1187	pseudouridine synthase activity
JR895_RS12640	COG4907	membrane protein (DUF2207)
JR895_RS12645	COG0009	L-threonylcarbamoyladenylate synthase
JR895_RS12650	COG0613	PHP domain protein
JR895_RS12660	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JR895_RS12665	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JR895_RS12665	COG0512	Glutamine amidotransferase of anthranilate synthase
JR895_RS12670	COG0134	indole-3-glycerol-phosphate synthase activity
JR895_RS12670	COG0135	phosphoribosylanthranilate isomerase activity
JR895_RS12685	COG3729	General stress protein
JR895_RS12690	COG3685	Protein conserved in bacteria
JR895_RS12695	COG3685	Protein conserved in bacteria
JR895_RS12700	COG3047	cAMP biosynthetic process
JR895_RS12720	COG1607	acyl-coa hydrolase
JR895_RS12725	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JR895_RS12730	COG2350	Protein conserved in bacteria
JR895_RS12735	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JR895_RS12755	COG4608	Belongs to the ABC transporter superfamily
JR895_RS12760	COG0444	Belongs to the ABC transporter superfamily
JR895_RS12765	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JR895_RS12770	COG0601	transmembrane transport
JR895_RS12775	COG4166	transmembrane transport
JR895_RS12785	COG2095	MarC family integral membrane protein
JR895_RS12790	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS12790	COG1454	alcohol dehydrogenase
JR895_RS12800	COG1435	thymidine kinase activity
JR895_RS12810	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JR895_RS12815	COG0745	RESPONSE REGULATOR receiver
JR895_RS12820	COG1752	Esterase of the alpha-beta hydrolase superfamily
JR895_RS12830	COG0788	formyltetrahydrofolate deformylase activity
JR895_RS12895	COG2181	nitrate reductase activity
JR895_RS12900	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JR895_RS12905	COG1140	nitrate reductase beta subunit
JR895_RS12910	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JR895_RS12915	COG2223	nitrite transmembrane transporter activity
JR895_RS12920	COG3850	Histidine kinase
JR895_RS12925	COG2197	response regulator
JR895_RS12930	COG4932	domain protein
JR895_RS12935	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
JR895_RS12940	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
JR895_RS12945	COG4572	Cation transport regulator
JR895_RS12950	COG0387	Pfam Sodium calcium exchanger
JR895_RS12975	COG2912	Transglutaminase-like superfamily
JR895_RS12980	COG3094	Invasion gene expression up-regulator, SirB
JR895_RS12985	COG2890	protein-(glutamine-N5) methyltransferase activity
JR895_RS13010	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JR895_RS13015	COG0659	secondary active sulfate transmembrane transporter activity
JR895_RS13030	COG0012	GTP binding
JR895_RS13035	COG3468	outer membrane autotransporter barrel domain protein
JR895_RS13040	COG3284	Transcriptional regulator
JR895_RS13045	COG2376	Dihydroxyacetone kinase
JR895_RS13050	COG1461	Dihydroxyacetone kinase
JR895_RS13055	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS13055	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
JR895_RS13055	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JR895_RS13075	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
JR895_RS13085	COG1619	proteins homologs of microcin C7 resistance protein MccF
JR895_RS13095	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JR895_RS13105	COG2719	SpoVR family
JR895_RS13120	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JR895_RS13125	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JR895_RS13130	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JR895_RS13145	COG0179	Fumarylacetoacetate (FAA) hydrolase
JR895_RS13170	COG2894	cell division
JR895_RS13220	COG2200	EAL domain
JR895_RS13250	COG0789	Transcriptional regulator
JR895_RS13255	COG5562	phage envelope protein
JR895_RS13275	COG0538	isocitrate dehydrogenase activity
JR895_RS13280	COG1187	pseudouridine synthase activity
JR895_RS13300	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JR895_RS13310	COG2205	protein histidine kinase activity
JR895_RS13315	COG2850	peptidyl-arginine hydroxylation
JR895_RS13335	COG1177	transmembrane transport
JR895_RS13340	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JR895_RS13350	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JR895_RS13355	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JR895_RS13365	COG4591	ABC-type transport system involved in lipoprotein release permease component
JR895_RS13375	COG4591	ABC-type transport system involved in lipoprotein release permease component
JR895_RS13380	COG4763	Acyl-transferase
JR895_RS13385	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JR895_RS13390	COG1376	ErfK ybiS ycfS ynhG family protein
JR895_RS13390	COG1388	LysM domain
JR895_RS13400	COG1309	transcriptional regulator
JR895_RS13405	COG3134	Outer membrane lipoprotein
JR895_RS13410	COG1252	NADH dehydrogenase
JR895_RS13430	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
JR895_RS13435	COG5633	Lipoprotein
JR895_RS13440	COG0537	adenosine 5'-monophosphoramidase activity
JR895_RS13445	COG4773	Receptor
JR895_RS13450	COG1263	PTS System
JR895_RS13450	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS13455	COG0084	hydrolase, TatD family'
JR895_RS13460	COG0470	DNA polymerase III
JR895_RS13470	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JR895_RS13475	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JR895_RS13480	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JR895_RS13490	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS13495	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JR895_RS13515	COG1399	metal-binding, possibly nucleic acid-binding protein
JR895_RS13520	COG0424	maF-like protein
JR895_RS13525	COG0564	pseudouridine synthase activity
JR895_RS13530	COG1530	ribonuclease E activity
JR895_RS13535	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JR895_RS13540	COG1256	bacterial-type flagellum assembly
JR895_RS13545	COG3951	Flagellar rod assembly protein muramidase FlgJ
JR895_RS13545	COG1705	Flagellar rod assembly protein muramidase FlgJ
JR895_RS13560	COG4786	Flagellar basal body rod
JR895_RS13565	COG4787	bacterial-type flagellum-dependent cell motility
JR895_RS13570	COG1749	Flagellar hook protein flgE
JR895_RS13575	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
JR895_RS13580	COG1558	bacterial-type flagellum-dependent cell motility
JR895_RS13585	COG1815	bacterial-type flagellum-dependent cell motility
JR895_RS13590	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
JR895_RS13595	COG2747	anti-sigma28 factor FlgM
JR895_RS13600	COG3418	PFAM FlgN family protein
JR895_RS13605	COG0728	peptidoglycan biosynthetic process
JR895_RS13610	COG0673	inositol 2-dehydrogenase activity
JR895_RS13620	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JR895_RS13630	COG2999	glutathione oxidoreductase activity
JR895_RS13665	COG3038	cytochrome b561
JR895_RS13670	COG2353	YceI-like domain
JR895_RS13680	COG1560	Kdo2-lipid A biosynthetic process
JR895_RS13695	COG5645	(Lipo)protein
JR895_RS13700	COG2943	transferase activity, transferring hexosyl groups
JR895_RS13715	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JR895_RS13720	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
JR895_RS13745	COG2197	response regulator
JR895_RS13760	COG1462	curli production assembly transport component CsgG
JR895_RS13770	COG3381	protein complex oligomerization
JR895_RS13795	COG1702	phosphate starvation-inducible protein PhoH
JR895_RS13800	COG2837	iron assimilation
JR895_RS13805	COG2822	iron ion transport
JR895_RS13815	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JR895_RS13825	COG0506	proline dehydrogenase activity
JR895_RS13825	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JR895_RS13825	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JR895_RS13830	COG1309	transcriptional regulator
JR895_RS13865	COG2233	PERMEase
JR895_RS13870	COG3729	General stress protein
JR895_RS13905	COG3381	protein complex oligomerization
JR895_RS13910	COG0243	molybdopterin cofactor binding
JR895_RS13915	COG3005	denitrification pathway
JR895_RS13920	COG0745	RESPONSE REGULATOR receiver
JR895_RS13925	COG1879	ABC-type sugar transport system periplasmic component
JR895_RS13930	COG2205	protein histidine kinase activity
JR895_RS13930	COG0784	Response regulator, receiver
JR895_RS13930	COG2198	Histidine kinase
JR895_RS13935	COG0348	domain, Protein
JR895_RS13955	COG1278	Cold shock
JR895_RS13960	COG1278	Cold shock
JR895_RS13980	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JR895_RS13985	COG1596	polysaccharide export
JR895_RS13990	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JR895_RS13995	COG0489	protein tyrosine kinase activity
JR895_RS13995	COG3206	protein involved in exopolysaccharide biosynthesis
JR895_RS14010	COG1294	oxidase, subunit
JR895_RS14015	COG1271	oxidase subunit
JR895_RS14020	COG1773	rubredoxin
JR895_RS14025	COG1999	signal sequence binding
JR895_RS14030	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JR895_RS14035	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
JR895_RS14040	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
JR895_RS14045	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
JR895_RS14055	COG0670	Belongs to the BI1 family
JR895_RS14060	COG2920	part of a sulfur-relay system
JR895_RS14065	COG1254	Belongs to the acylphosphatase family
JR895_RS14080	COG1832	CoA-binding protein
JR895_RS14095	COG0210	DNA helicase
JR895_RS14100	COG3304	Inner membrane component domain
JR895_RS14105	COG1289	transmembrane transporter activity
JR895_RS14110	COG3070	regulator of competence-specific genes
JR895_RS14130	COG1067	ATP-dependent peptidase activity
JR895_RS14140	COG3130	regulation of translation
JR895_RS14145	COG3009	Protein conserved in bacteria
JR895_RS14150	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JR895_RS14150	COG3008	intermembrane lipid transfer
JR895_RS14155	COG2995	paraquat-inducible protein a
JR895_RS14160	COG0488	(ABC) transporter
JR895_RS14170	COG3217	Mosc domain protein beta barrel domain protein
JR895_RS14170	COG0633	Ferredoxin
JR895_RS14185	COG3121	Chaperone
JR895_RS14190	COG3539	Fimbrial protein
JR895_RS14195	COG3539	Fimbrial protein
JR895_RS14200	COG3539	Fimbrial protein
JR895_RS14205	COG3188	usher protein
JR895_RS14210	COG3121	Chaperone
JR895_RS14215	COG3539	Fimbrial protein
JR895_RS14220	COG0431	NADPH-dependent FMN reductase
JR895_RS14225	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JR895_RS14235	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JR895_RS14240	COG1116	anion transmembrane transporter activity
JR895_RS14245	COG0308	aminopeptidase N
JR895_RS14265	COG1448	Aminotransferase
JR895_RS14270	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JR895_RS14275	COG3108	Peptidase M15
JR895_RS14280	COG2989	Protein conserved in bacteria
JR895_RS14290	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
JR895_RS14300	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JR895_RS14305	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JR895_RS14310	COG3173	Aminoglycoside phosphotransferase
JR895_RS14325	COG3214	Protein conserved in bacteria
JR895_RS14330	COG1663	tetraacyldisaccharide 4'-kinase activity
JR895_RS14335	COG1132	(ABC) transporter
JR895_RS14340	COG0658	competence protein
JR895_RS14340	COG2333	competence protein COMEC
JR895_RS14350	COG0539	negative regulation of cytoplasmic translation
JR895_RS14360	COG0501	Belongs to the peptidase M48B family
JR895_RS14375	COG2323	membrane
JR895_RS14380	COG1944	ATP diphosphatase activity
JR895_RS14385	COG2116	formate transmembrane transporter activity
JR895_RS14390	COG1882	Formate acetyltransferase
JR895_RS14395	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JR895_RS14400	COG2249	NAD(P)H dehydrogenase (quinone) activity
JR895_RS14405	COG0583	DNA-binding transcription factor activity
JR895_RS14410	COG0531	amino acid
JR895_RS14420	COG1335	isochorismatase
JR895_RS14425	COG3302	dmso reductase anchor subunit
JR895_RS14430	COG0437	4 iron, 4 sulfur cluster binding
JR895_RS14435	COG0243	molybdopterin cofactor binding
JR895_RS14445	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JR895_RS14455	COG1178	ABC-type Fe3 transport system permease component
JR895_RS14455	COG1674	ftsk spoiiie
JR895_RS14460	COG1522	sequence-specific DNA binding
JR895_RS14465	COG0492	ferredoxin-NADP+ reductase activity
JR895_RS14470	COG4988	ABC transporter
JR895_RS14475	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JR895_RS14495	COG0542	response to heat
JR895_RS14505	COG1278	Cold shock
JR895_RS14510	COG0577	efflux transmembrane transporter activity
JR895_RS14510	COG1136	(ABC) transporter
JR895_RS14515	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JR895_RS14520	COG2990	Protein conserved in bacteria
JR895_RS14525	COG3593	DNA synthesis involved in DNA repair
JR895_RS14535	COG2431	L-lysine efflux transmembrane transporter activity
JR895_RS14545	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JR895_RS14550	COG0028	Belongs to the TPP enzyme family
JR895_RS14555	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
JR895_RS14560	COG0702	epimerase
JR895_RS14565	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JR895_RS14570	COG3023	N-Acetylmuramoyl-L-alanine amidase
JR895_RS14585	COG1126	abc transporter atp-binding protein
JR895_RS14590	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JR895_RS14595	COG4215	(ABC) transporter
JR895_RS14600	COG4160	amino acid transport
JR895_RS14605	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JR895_RS14620	COG1177	transmembrane transport
JR895_RS14625	COG1176	ABC-type spermidine putrescine transport system, permease component I
JR895_RS14630	COG3842	ATPase activity
JR895_RS14635	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JR895_RS14650	COG0778	Nitroreductase
JR895_RS14660	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JR895_RS14675	COG3226	Transcriptional regulator
JR895_RS14680	COG0738	Major facilitator superfamily
JR895_RS14685	COG0561	phosphatase activity
JR895_RS14695	COG2814	Major facilitator Superfamily
JR895_RS14700	COG0671	phosphoesterase, PA-phosphatase related
JR895_RS14705	COG1349	DNA-binding transcription factor activity
JR895_RS14710	COG1686	Belongs to the peptidase S11 family
JR895_RS14715	COG0625	glutathione transferase activity
JR895_RS14720	COG2133	pyrroloquinoline quinone binding
JR895_RS14735	COG2199	diguanylate cyclase activity
JR895_RS14740	COG2200	EAL domain
JR895_RS14745	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JR895_RS14755	COG0747	negative chemotaxis
JR895_RS14765	COG1446	asparaginase
JR895_RS14770	COG0303	'Molybdopterin
JR895_RS14775	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JR895_RS14780	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JR895_RS14785	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JR895_RS14790	COG1882	Formate acetyltransferase
JR895_RS14795	COG0561	phosphatase activity
JR895_RS14805	COG0488	(ABC) transporter
JR895_RS14810	COG1376	ErfK ybiS ycfS ynhG family protein
JR895_RS14815	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JR895_RS14820	COG1321	iron dependent repressor
JR895_RS14830	COG2194	sulfuric ester hydrolase activity
JR895_RS14835	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JR895_RS14845	COG5006	permease, DMT superfamily
JR895_RS14855	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JR895_RS14860	COG0765	amino acid transport
JR895_RS14865	COG1126	abc transporter atp-binding protein
JR895_RS14870	COG0668	transmembrane transport
JR895_RS14890	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS14905	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JR895_RS14915	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
JR895_RS14920	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JR895_RS14925	COG1199	ATP-dependent helicase activity
JR895_RS14930	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
JR895_RS14935	COG0513	Belongs to the DEAD box helicase family
JR895_RS14940	COG1309	transcriptional regulator
JR895_RS14950	COG1131	(ABC) transporter
JR895_RS14955	COG0842	Transport permease protein
JR895_RS14960	COG0842	Transport permease protein
JR895_RS14970	COG3568	Endonuclease Exonuclease Phosphatase
JR895_RS14975	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JR895_RS14980	COG0392	lysyltransferase activity
JR895_RS14985	COG0670	Belongs to the BI1 family
JR895_RS14990	COG0670	Belongs to the BI1 family
JR895_RS14995	COG0314	molybdopterin synthase activity
JR895_RS15000	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JR895_RS15010	COG0521	Mo-molybdopterin cofactor biosynthetic process
JR895_RS15020	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JR895_RS15030	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JR895_RS15035	COG2226	methyltransferase
JR895_RS15050	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JR895_RS15055	COG1881	PFAM PEBP family protein
JR895_RS15060	COG4677	pectinesterase activity
JR895_RS15065	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JR895_RS15070	COG0471	metal ion transport
JR895_RS15075	COG2828	Protein conserved in bacteria
JR895_RS15080	COG0583	DNA-binding transcription factor activity
JR895_RS15090	COG0561	phosphatase activity
JR895_RS15095	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JR895_RS15100	COG4149	molybdate abc transporter
JR895_RS15105	COG0725	ABC transporter, periplasmic molybdate-binding protein
JR895_RS15115	COG2005	Transcriptional regulator
JR895_RS15115	COG3585	molybdate ion transport
JR895_RS15120	COG1119	ATPase activity
JR895_RS15125	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JR895_RS15130	COG1085	galactose-1-phosphate uridylyltransferase
JR895_RS15140	COG2017	converts alpha-aldose to the beta-anomer
JR895_RS15150	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JR895_RS15160	COG1230	cation diffusion facilitator family transporter
JR895_RS15165	COG3201	nicotinamide mononucleotide transporter
JR895_RS15210	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
JR895_RS15215	COG2885	chlorophyll binding
JR895_RS15225	COG3064	Membrane
JR895_RS15230	COG0848	biopolymer transport protein
JR895_RS15235	COG0811	peptide transport
JR895_RS15240	COG0824	Thioesterase
JR895_RS15245	COG3790	cyd operon protein YbgE
JR895_RS15250	COG4890	Cyd operon protein YbgT
JR895_RS15255	COG1294	oxidase, subunit
JR895_RS15260	COG1271	oxidase subunit
JR895_RS15265	COG0383	alpha-mannosidase activity
JR895_RS15270	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS15270	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS15270	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS15275	COG2188	Transcriptional regulator
JR895_RS15280	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JR895_RS15290	COG0508	dehydrogenase complex catalyzes the overall conversion of
JR895_RS15295	COG0567	Dehydrogenase, E1 component
JR895_RS15300	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JR895_RS15305	COG1053	succinate dehydrogenase
JR895_RS15310	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
JR895_RS15315	COG2009	succinate dehydrogenase
JR895_RS15325	COG0372	Belongs to the citrate synthase family
JR895_RS15330	COG3539	Fimbrial protein
JR895_RS15335	COG3188	usher protein
JR895_RS15340	COG3121	Chaperone
JR895_RS15345	COG3539	Fimbrial protein
JR895_RS15350	COG3180	Ammonia monooxygenase
JR895_RS15365	COG1984	allophanate hydrolase subunit 2
JR895_RS15370	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JR895_RS15375	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JR895_RS15380	COG3104	oligopeptide transport
JR895_RS15385	COG0415	Belongs to the DNA photolyase family
JR895_RS15390	COG3272	Protein of unknown function (DUF1722)
JR895_RS15425	COG3209	COG3209 Rhs family protein
JR895_RS15455	COG2205	protein histidine kinase activity
JR895_RS15460	COG0745	RESPONSE REGULATOR receiver
JR895_RS15470	COG1982	Orn Lys Arg decarboxylase major
JR895_RS15475	COG0531	amino acid
JR895_RS15500	COG0033	Phosphoglucomutase
JR895_RS15505	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
JR895_RS15510	COG0596	Alpha beta hydrolase
JR895_RS15520	COG0716	FMN binding
JR895_RS15530	COG0735	belongs to the Fur family
JR895_RS15550	COG1263	PTS System
JR895_RS15550	COG2190	(PTS) system
JR895_RS15550	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS15560	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JR895_RS15565	COG1940	carbohydrate kinase activity
JR895_RS15565	COG1846	Transcriptional regulator
JR895_RS15570	COG0647	UMP catabolic process
JR895_RS15575	COG0367	asparagine synthase
JR895_RS15615	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JR895_RS15625	COG1702	phosphate starvation-inducible protein PhoH
JR895_RS15635	COG4535	Mg2 and Co2 transporter CorC
JR895_RS15640	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JR895_RS15650	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JR895_RS15655	COG0765	amino acid transport
JR895_RS15660	COG0765	amino acid transport
JR895_RS15665	COG1126	abc transporter atp-binding protein
JR895_RS15675	COG0443	Heat shock 70 kDa protein
JR895_RS15680	COG2214	Heat shock protein DnaJ domain protein
JR895_RS15690	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JR895_RS15695	COG2214	Heat shock protein DnaJ domain protein
JR895_RS15705	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JR895_RS15710	COG2888	peptidyl-tyrosine sulfation
JR895_RS15725	COG1466	dna polymerase III delta subunit
JR895_RS15735	COG0406	alpha-ribazole phosphatase activity
JR895_RS15740	COG0799	negative regulation of ribosome biogenesis
JR895_RS15750	COG0768	penicillin binding
JR895_RS15755	COG0772	Belongs to the SEDS family
JR895_RS15760	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JR895_RS15765	COG1686	Belongs to the peptidase S11 family
JR895_RS15780	COG0583	DNA-binding transcription factor activity
JR895_RS15790	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JR895_RS15795	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JR895_RS15815	COG3069	C4-dicarboxylate transmembrane transporter activity
JR895_RS15820	COG4565	transcriptional regulatory protein
JR895_RS15825	COG3290	protein histidine kinase activity
JR895_RS15830	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
JR895_RS15840	COG2301	Belongs to the HpcH HpaI aldolase family
JR895_RS15845	COG3051	citrate lyase alpha subunit
JR895_RS15860	COG0471	metal ion transport
JR895_RS15865	COG3719	Belongs to the RNase T2 family
JR895_RS15870	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JR895_RS15875	COG1063	alcohol dehydrogenase
JR895_RS15880	COG0589	response to stress
JR895_RS15885	COG3634	alkyl hydroperoxide reductase activity
JR895_RS15890	COG0450	alkyl hydroperoxide reductase
JR895_RS15895	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JR895_RS15900	COG0583	DNA-binding transcription factor activity
JR895_RS15905	COG3969	phosphoadenosine phosphosulfate
JR895_RS15910	COG1475	DNA binding
JR895_RS15915	COG0436	Aminotransferase
JR895_RS15920	COG0371	Dehydrogenase
JR895_RS15925	COG2879	small protein
JR895_RS15930	COG1966	Carbon starvation protein
JR895_RS15935	COG2050	protein possibly involved in aromatic compounds catabolism
JR895_RS15940	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS15945	COG3433	isochorismatase activity
JR895_RS15945	COG1535	isochorismatase
JR895_RS15950	COG1021	2,3-dihydroxybenzoate-AMP ligase
JR895_RS15955	COG1169	isochorismate synthase
JR895_RS15960	COG4592	Periplasmic binding protein
JR895_RS15970	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JR895_RS15975	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JR895_RS15980	COG1120	ATPase activity
JR895_RS15985	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
JR895_RS15990	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
JR895_RS15990	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JR895_RS15995	COG3251	PFAM MbtH domain protein
JR895_RS16000	COG2382	esterase
JR895_RS16005	COG4771	TonB-dependent receptor
JR895_RS16010	COG2977	Belongs to the P-Pant transferase superfamily
JR895_RS16015	COG3385	transposase activity
JR895_RS16035	COG2315	Protein conserved in bacteria
JR895_RS16040	COG0778	Nitroreductase
JR895_RS16045	COG0668	transmembrane transport
JR895_RS16050	COG1113	amino acid transport
JR895_RS16055	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JR895_RS16060	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JR895_RS16065	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JR895_RS16070	COG1538	Outer membrane efflux protein
JR895_RS16075	COG0745	RESPONSE REGULATOR receiver
JR895_RS16080	COG5002	protein histidine kinase activity
JR895_RS16085	COG3501	Rhs element vgr protein
JR895_RS16125	COG3209	COG3209 Rhs family protein
JR895_RS16125	COG4104	PAAR repeat-containing protein
JR895_RS16145	COG5433	transposase activity
JR895_RS16150	COG1215	transferase activity, transferring glycosyl groups
JR895_RS16170	COG4571	Outer membrane protease
JR895_RS16175	COG2207	Transcriptional regulator
JR895_RS16185	COG0500	methyltransferase
JR895_RS16200	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JR895_RS16210	COG3772	lysozyme
JR895_RS16220	COG2207	Transcriptional regulator
JR895_RS16225	COG3272	Protein of unknown function (DUF1722)
JR895_RS16300	COG0582	viral genome integration into host DNA
JR895_RS16310	COG2197	response regulator
JR895_RS16315	COG3539	Fimbrial protein
JR895_RS16320	COG3539	Fimbrial protein
JR895_RS16325	COG3188	usher protein
JR895_RS16330	COG3121	Chaperone
JR895_RS16335	COG3539	Fimbrial protein
JR895_RS16345	COG2501	S4 domain
JR895_RS16350	COG1988	membrane-bound metal-dependent
JR895_RS16360	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JR895_RS16370	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JR895_RS16375	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JR895_RS16380	COG0549	Belongs to the carbamate kinase family
JR895_RS16390	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JR895_RS16395	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JR895_RS16400	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
JR895_RS16405	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JR895_RS16410	COG3257	ureidoglycine aminohydrolase activity
JR895_RS16415	COG1929	Belongs to the glycerate kinase type-1 family
JR895_RS16420	COG2233	PERMEase
JR895_RS16430	COG1953	Uracil, thiamine, allantoin
JR895_RS16435	COG2084	Dehydrogenase
JR895_RS16440	COG3622	Belongs to the hyi family
JR895_RS16445	COG3960	tartronate-semialdehyde synthase activity
JR895_RS16450	COG1414	Transcriptional regulator
JR895_RS16460	COG0583	DNA-binding transcription factor activity
JR895_RS16485	COG3209	COG3209 Rhs family protein
JR895_RS16495	COG3209	COG3209 Rhs family protein
JR895_RS16500	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
JR895_RS16505	COG4181	ATPase activity
JR895_RS16510	COG2755	lipolytic protein G-D-S-L family
JR895_RS16515	COG0300	oxidoreductase activity
JR895_RS16520	COG3118	belongs to the thioredoxin family
JR895_RS16525	COG0390	transport system, permease component
JR895_RS16530	COG4619	ABC transporter
JR895_RS16535	COG0330	HflC and HflK could
JR895_RS16540	COG1585	Membrane protein implicated in regulation of membrane protease activity
JR895_RS16545	COG0789	Transcriptional regulator
JR895_RS16550	COG0531	amino acid
JR895_RS16555	COG2066	Belongs to the glutaminase family
JR895_RS16560	COG2217	Heavy metal translocating P-type atpase
JR895_RS16565	COG3093	addiction module antidote protein HigA
JR895_RS16570	COG3735	TraB family
JR895_RS16575	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JR895_RS16580	COG0737	Belongs to the 5'-nucleotidase family
JR895_RS16585	COG2223	nitrite transmembrane transporter activity
JR895_RS16590	COG4651	solute:proton antiporter activity
JR895_RS16590	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JR895_RS16595	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JR895_RS16630	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JR895_RS16640	COG2832	Protein of unknown function (DUF454)
JR895_RS16645	COG3923	Primosomal replication protein n
JR895_RS16655	COG3264	Mechanosensitive ion channel
JR895_RS16655	COG1196	nuclear chromosome segregation
JR895_RS16660	COG1309	transcriptional regulator
JR895_RS16665	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JR895_RS16670	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JR895_RS16685	COG0110	maltose O-acetyltransferase activity
JR895_RS16695	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JR895_RS16700	COG5507	3-demethylubiquinone-9 3-methyltransferase
JR895_RS16710	COG3695	enzyme binding
JR895_RS16715	COG3126	Type III secretion system lipoprotein chaperone (YscW)
JR895_RS16720	COG1946	Acyl-CoA thioesterase
JR895_RS16725	COG0004	ammonium transporteR
JR895_RS16730	COG0347	Belongs to the P(II) protein family
JR895_RS16735	COG1132	(ABC) transporter
JR895_RS16740	COG1132	(ABC) transporter
JR895_RS16745	COG1522	sequence-specific DNA binding
JR895_RS16755	COG4533	DNA binding
JR895_RS16765	COG0824	Thioesterase
JR895_RS16770	COG1555	photosystem II stabilization
JR895_RS16775	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JR895_RS16780	COG0776	regulation of translation
JR895_RS16785	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JR895_RS16805	COG0271	Belongs to the BolA IbaG family
JR895_RS16810	COG3056	Lipoprotein
JR895_RS16815	COG2223	nitrite transmembrane transporter activity
JR895_RS16820	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JR895_RS16825	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JR895_RS16830	COG1845	cytochrome c oxidase, subunit III
JR895_RS16835	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JR895_RS16845	COG2814	Major facilitator Superfamily
JR895_RS16855	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JR895_RS16860	COG0693	protein deglycase activity
JR895_RS16875	COG0142	geranyltranstransferase activity
JR895_RS16885	COG0667	Aldo Keto reductase
JR895_RS16890	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JR895_RS16895	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JR895_RS16910	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JR895_RS16910	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JR895_RS16920	COG4238	major outer membrane lipoprotein
JR895_RS16925	COG3248	Nucleoside-binding outer membrane protein
JR895_RS16930	COG1403	HNH endonuclease
JR895_RS16935	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JR895_RS16940	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JR895_RS16945	COG1862	Preprotein translocase
JR895_RS16965	COG0366	Alpha amylase catalytic
JR895_RS16970	COG1113	amino acid transport
JR895_RS16975	COG1114	Component of the transport system for branched-chain amino acids
JR895_RS16980	COG5002	protein histidine kinase activity
JR895_RS16985	COG0745	RESPONSE REGULATOR receiver
JR895_RS16990	COG0420	3'-5' exonuclease activity
JR895_RS16995	COG0419	ATPase involved in DNA repair
JR895_RS17000	COG2814	Major facilitator Superfamily
JR895_RS17005	COG1940	carbohydrate kinase activity
JR895_RS17030	COG4126	flavin adenine dinucleotide binding
JR895_RS17050	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JR895_RS17055	COG3706	GGDEF domain
JR895_RS17065	COG1785	Belongs to the alkaline phosphatase family
JR895_RS17080	COG1181	Belongs to the D-alanine--D-alanine ligase family
JR895_RS17100	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
JR895_RS17105	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JR895_RS17110	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JR895_RS17115	COG3468	outer membrane autotransporter barrel domain protein
JR895_RS17120	COG0113	porphobilinogen synthase activity
JR895_RS17125	COG2175	clavaminate synthase activity
JR895_RS17130	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JR895_RS17135	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
JR895_RS17145	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JR895_RS17150	COG1215	transferase activity, transferring glycosyl groups
JR895_RS17180	COG3122	Protein conserved in bacteria
JR895_RS17185	COG2814	Major facilitator Superfamily
JR895_RS17200	COG3971	2-oxopent-4-enoate hydratase activity
JR895_RS17220	COG1414	Transcriptional regulator
JR895_RS17225	COG1609	Transcriptional regulator
JR895_RS17230	COG3250	beta-galactosidase activity
JR895_RS17235	COG2223	nitrite transmembrane transporter activity
JR895_RS17245	COG2807	transmembrane transport
JR895_RS17255	COG0288	reversible hydration of carbon dioxide
JR895_RS17260	COG0583	DNA-binding transcription factor activity
JR895_RS17265	COG0402	S-adenosylhomocysteine deaminase activity
JR895_RS17270	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JR895_RS17275	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JR895_RS17280	COG2079	MmgE PrpD family protein
JR895_RS17285	COG0372	Belongs to the citrate synthase family
JR895_RS17290	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JR895_RS17295	COG3829	transcription factor binding
JR895_RS17305	COG1280	lysine exporter protein (LysE YggA)
JR895_RS17320	COG1064	alcohol dehydrogenase
JR895_RS17325	COG0402	S-adenosylhomocysteine deaminase activity
JR895_RS17330	COG0549	Belongs to the carbamate kinase family
JR895_RS17340	COG1304	FMN binding
JR895_RS17345	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JR895_RS17355	COG0666	response to abiotic stimulus
JR895_RS17365	COG0583	DNA-binding transcription factor activity
JR895_RS17370	COG2200	EAL domain
JR895_RS17370	COG2771	luxR family
JR895_RS17380	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JR895_RS17405	COG1556	Lactate utilization protein
JR895_RS17410	COG1139	Iron-sulfur cluster binding protein
JR895_RS17415	COG0247	lactate metabolic process
JR895_RS17420	COG2207	Transcriptional regulator
JR895_RS17425	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JR895_RS17435	COG3059	membrane
JR895_RS17445	COG3708	Transcriptional regulator
JR895_RS17445	COG2207	Transcriptional regulator
JR895_RS17450	COG1388	LysM domain
JR895_RS17490	COG3188	usher protein
JR895_RS17500	COG3121	Chaperone
JR895_RS17505	COG0727	PFAM Uncharacterised protein family (UPF0153)
JR895_RS17530	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
JR895_RS17535	COG4220	transposase activity
JR895_RS17545	COG5562	phage envelope protein
JR895_RS17560	COG3772	lysozyme
JR895_RS17620	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JR895_RS17630	COG2076	Multidrug Resistance protein
JR895_RS17645	COG0582	viral genome integration into host DNA
JR895_RS17650	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS17690	COG3093	addiction module antidote protein HigA
JR895_RS17725	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JR895_RS17745	COG2195	Cleaves the N-terminal amino acid of tripeptides
JR895_RS17760	COG0454	-acetyltransferase
JR895_RS17770	COG2161	toxin-antitoxin pair type II binding
JR895_RS17790	COG1943	Transposase
JR895_RS17795	COG0791	NLP P60 protein
JR895_RS17800	COG3077	Addiction module antitoxin, RelB DinJ family
JR895_RS17805	COG3041	Addiction module toxin RelE StbE family
JR895_RS17810	COG3034	peptidoglycan biosynthetic process
JR895_RS17815	COG0121	glutamine amidotransferase
JR895_RS17825	COG1960	acyl-CoA dehydrogenase activity
JR895_RS17835	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JR895_RS17840	COG5433	transposase activity
JR895_RS17895	COG3157	Type VI secretion system effector, Hcp
JR895_RS17900	COG4104	PAAR repeat-containing protein
JR895_RS17915	COG0582	viral genome integration into host DNA
JR895_RS17930	COG4983	Phage plasmid primase, P4 family domain protein
JR895_RS17965	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JR895_RS17965	COG0758	DNA mediated transformation
JR895_RS17975	COG2831	hemolysin activation secretion protein
JR895_RS17980	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JR895_RS17985	COG1454	alcohol dehydrogenase
JR895_RS17985	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS17990	COG3958	Transketolase
JR895_RS17995	COG3959	Transketolase, thiamine diphosphate binding domain
JR895_RS18000	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS18005	COG2271	Major facilitator Superfamily
JR895_RS18010	COG0583	DNA-binding transcription factor activity
JR895_RS18015	COG2188	Transcriptional regulator
JR895_RS18020	COG2222	sugar isomerase
JR895_RS18030	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JR895_RS18065	COG3842	ATPase activity
JR895_RS18070	COG2040	homocysteine
JR895_RS18075	COG0833	amino acid
JR895_RS18095	COG3596	GTP binding
JR895_RS18105	COG2378	regulation of single-species biofilm formation
JR895_RS18115	COG2378	regulation of single-species biofilm formation
JR895_RS18135	COG2003	Belongs to the UPF0758 family
JR895_RS18180	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JR895_RS18190	COG2226	methyltransferase
JR895_RS18200	COG1388	LysM domain
JR895_RS18200	COG0741	lytic transglycosylase activity
JR895_RS18215	COG0583	DNA-binding transcription factor activity
JR895_RS18220	COG0656	L-ascorbic acid biosynthetic process
JR895_RS18255	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JR895_RS18260	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JR895_RS18265	COG2011	ABC-type metal ion transport system permease component
JR895_RS18270	COG1464	Belongs to the NlpA lipoprotein family
JR895_RS18280	COG1720	tRNA m6t6A37 methyltransferase activity
JR895_RS18290	COG0791	NLP P60 protein
JR895_RS18295	COG3015	lipoprotein NlpE involved in copper resistance
JR895_RS18300	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JR895_RS18305	COG4681	YaeQ
JR895_RS18315	COG4568	rho-dependent transcription termination
JR895_RS18320	COG0037	tRNA processing
JR895_RS18325	COG0346	lactoylglutathione lyase activity
JR895_RS18330	COG1982	Orn Lys Arg decarboxylase major
JR895_RS18340	COG0587	DNA-directed DNA polymerase activity
JR895_RS18365	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JR895_RS18370	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
JR895_RS18380	COG0750	zinc metalloprotease
JR895_RS18385	COG0575	Belongs to the CDS family
JR895_RS18390	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JR895_RS18395	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JR895_RS18420	COG0024	Methionine aminopeptidase
JR895_RS18435	COG1408	metallophosphoesterase
JR895_RS18445	COG3835	regulator
JR895_RS18450	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JR895_RS18465	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JR895_RS18470	COG2860	membrane
JR895_RS18495	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JR895_RS18500	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JR895_RS18505	COG1120	ATPase activity
JR895_RS18510	COG4774	siderophore transport
JR895_RS18515	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JR895_RS18520	COG1643	Atp-dependent helicase
JR895_RS18525	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JR895_RS18535	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JR895_RS18545	COG0617	tRNA 3'-terminal CCA addition
JR895_RS18550	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JR895_RS18555	COG3539	Fimbrial protein
JR895_RS18560	COG3121	Chaperone
JR895_RS18565	COG3188	usher protein
JR895_RS18570	COG3539	Fimbrial protein
JR895_RS18575	COG3539	Fimbrial protein
JR895_RS18580	COG3539	Fimbrial protein
JR895_RS18585	COG3539	Fimbrial protein
JR895_RS18600	COG5464	transposase or invertase
JR895_RS18610	COG0726	polysaccharide deacetylase
JR895_RS18615	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS18620	COG0842	Transport permease protein
JR895_RS18625	COG1131	(ABC) transporter
JR895_RS18630	COG0288	reversible hydration of carbon dioxide
JR895_RS18635	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JR895_RS18640	COG4993	Dehydrogenase
JR895_RS18645	COG2132	Multicopper oxidase
JR895_RS18670	COG1049	propionate catabolic process, 2-methylcitrate cycle
JR895_RS18675	COG3064	Membrane
JR895_RS18680	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JR895_RS18685	COG0508	dehydrogenase complex catalyzes the overall conversion of
JR895_RS18690	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JR895_RS18695	COG2186	Transcriptional regulator
JR895_RS18705	COG3725	Membrane protein required for beta-lactamase induction
JR895_RS18710	COG3023	N-Acetylmuramoyl-L-alanine amidase
JR895_RS18715	COG0157	Belongs to the NadC ModD family
JR895_RS18720	COG4969	Belongs to the N-Me-Phe pilin family
JR895_RS18730	COG1459	type II secretion system
JR895_RS18745	COG0237	dephospho-CoA kinase activity
JR895_RS18760	COG0494	nUDIX hydrolase
JR895_RS18780	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JR895_RS18785	COG0849	cell division
JR895_RS18790	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JR895_RS18795	COG1181	Belongs to the D-alanine--D-alanine ligase family
JR895_RS18810	COG0772	Belongs to the SEDS family
JR895_RS18815	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JR895_RS18825	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JR895_RS18830	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JR895_RS18835	COG0768	penicillin binding
JR895_RS18840	COG3116	cell division
JR895_RS18855	COG1609	Transcriptional regulator
JR895_RS18865	COG0440	acetolactate synthase activity
JR895_RS18870	COG0028	Belongs to the TPP enzyme family
JR895_RS18880	COG0583	DNA-binding transcription factor activity
JR895_RS18895	COG0473	3-isopropylmalate dehydrogenase activity
JR895_RS18910	COG2814	Major facilitator Superfamily
JR895_RS18920	COG4533	DNA binding
JR895_RS18925	COG4143	(ABC) transporter
JR895_RS18930	COG1178	ABC-type Fe3 transport system permease component
JR895_RS18935	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
JR895_RS18940	COG0586	Pfam SNARE associated Golgi protein
JR895_RS18945	COG4977	sequence-specific DNA binding
JR895_RS18950	COG1069	ribulokinase activity
JR895_RS18955	COG2160	L-arabinose isomerase activity
JR895_RS18960	COG0235	Class ii aldolase
JR895_RS18965	COG0417	DNA replication proofreading
JR895_RS18975	COG0564	pseudouridine synthase activity
JR895_RS18980	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JR895_RS18985	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JR895_RS18990	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JR895_RS19015	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JR895_RS19030	COG2271	Major facilitator Superfamily
JR895_RS19035	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
JR895_RS19040	COG0644	oxidoreductase
JR895_RS19090	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JR895_RS19095	COG0505	Belongs to the CarA family
JR895_RS19115	COG1047	Peptidyl-prolyl cis-trans
JR895_RS19130	COG0196	riboflavin kinase activity
JR895_RS19160	COG0583	DNA-binding transcription factor activity
JR895_RS19175	COG3385	transposase activity
JR895_RS19195	COG4735	regulation of single-species biofilm formation
JR895_RS19200	COG1584	GPR1 FUN34 yaaH family protein
JR895_RS19205	COG0521	Mo-molybdopterin cofactor biosynthetic process
JR895_RS19210	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JR895_RS19215	COG1115	amino acid carrier protein
JR895_RS19230	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JR895_RS19240	COG0527	aspartate kinase activity
JR895_RS19240	COG0460	homoserine dehydrogenase
JR895_RS19250	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
JR895_RS19260	COG0745	RESPONSE REGULATOR receiver
JR895_RS19265	COG4452	Inner membrane protein CreD
JR895_RS19270	COG2205	protein histidine kinase activity
JR895_RS19275	COG0745	RESPONSE REGULATOR receiver
JR895_RS19280	COG3045	CreA protein
JR895_RS19285	COG3708	Transcriptional regulator
JR895_RS19285	COG2207	Transcriptional regulator
JR895_RS19305	COG0741	lytic transglycosylase activity
JR895_RS19310	COG0488	(ABC) transporter
JR895_RS19315	COG3172	ATPase kinase involved in NAD metabolism
JR895_RS19315	COG1056	cytidyltransferase-related domain
JR895_RS19320	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JR895_RS19325	COG0560	Phosphoserine phosphatase
JR895_RS19330	COG3726	membrane protein affecting hemolysin expression
JR895_RS19365	COG1328	CTP reductase activity
JR895_RS19370	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JR895_RS19375	COG0084	hydrolase, TatD family'
JR895_RS19380	COG4667	esterase of the alpha-beta hydrolase superfamily
JR895_RS19390	COG2823	Periplasmic or secreted lipoprotein
JR895_RS19400	COG1011	Hydrolase
JR895_RS19405	COG0456	acetyltransferase
JR895_RS19410	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
JR895_RS19440	COG4114	ferric iron reductase
JR895_RS19445	COG2197	response regulator
JR895_RS19450	COG2197	response regulator
JR895_RS19455	COG2966	Psort location CytoplasmicMembrane, score
JR895_RS19470	COG1484	DNA-dependent DNA replication
JR895_RS19485	COG1063	alcohol dehydrogenase
JR895_RS19490	COG1802	Transcriptional regulator
JR895_RS19495	COG0025	NhaP-type Na H and K H
JR895_RS19500	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JR895_RS19515	COG0840	transmembrane signaling receptor activity
JR895_RS19520	COG1846	Transcriptional regulator
JR895_RS19525	COG0179	Fumarylacetoacetate (FAA) hydrolase
JR895_RS19530	COG1012	belongs to the aldehyde dehydrogenase family
JR895_RS19535	COG3384	dioxygenase
JR895_RS19545	COG3971	2-oxopent-4-enoate hydratase activity
JR895_RS19565	COG2368	4-hydroxyphenylacetate
JR895_RS19570	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JR895_RS19575	COG1966	Carbon starvation protein
JR895_RS19580	COG2879	small protein
JR895_RS19585	COG0523	cobalamin synthesis protein
JR895_RS19610	COG0732	type I restriction modification DNA specificity domain
JR895_RS19625	COG5457	Domain of unknown function (DUF1127)
JR895_RS19630	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JR895_RS19640	COG2814	Major facilitator Superfamily
JR895_RS19645	COG2733	membrane
JR895_RS19650	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
JR895_RS19655	COG1924	4 iron, 4 sulfur cluster binding
JR895_RS19670	COG0477	Major facilitator Superfamily
JR895_RS19680	COG3366	ferrous iron transmembrane transporter activity
JR895_RS19685	COG0700	Nucleoside recognition
JR895_RS19690	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JR895_RS19695	COG0583	DNA-binding transcription factor activity
JR895_RS19715	COG2186	Transcriptional regulator
JR895_RS19720	COG0246	Mannitol dehydrogenase
JR895_RS19735	COG3539	Fimbrial protein
JR895_RS19740	COG3539	Fimbrial protein
JR895_RS19745	COG3539	Fimbrial protein
JR895_RS19750	COG3188	usher protein
JR895_RS19755	COG3121	Chaperone
JR895_RS19760	COG3539	Fimbrial protein
JR895_RS19765	COG3385	transposase activity
JR895_RS19775	COG4974	Belongs to the 'phage' integrase family
JR895_RS19780	COG0582	viral genome integration into host DNA
JR895_RS19785	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JR895_RS19790	COG3055	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
JR895_RS19845	COG1064	alcohol dehydrogenase
JR895_RS19850	COG0433	COG0433 Predicted ATPase
JR895_RS19855	COG0795	lipopolysaccharide-transporting ATPase activity
JR895_RS19860	COG0795	lipopolysaccharide-transporting ATPase activity
JR895_RS19870	COG2927	DNA polymerase III (CHI subunit)
JR895_RS19880	COG4269	membrane
JR895_RS19885	COG0456	acetyltransferase
JR895_RS19890	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
JR895_RS19905	COG2731	YhcH YjgK YiaL family protein
JR895_RS19910	COG1309	transcriptional regulator
JR895_RS19915	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS19920	COG0251	oxidation-reduction process
JR895_RS19940	COG0251	oxidation-reduction process
JR895_RS19945	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JR895_RS19955	COG1609	Transcriptional regulator
JR895_RS19960	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS19960	COG1263	PTS System
JR895_RS19965	COG0366	Alpha amylase catalytic
JR895_RS19970	COG1328	CTP reductase activity
JR895_RS19975	COG0602	queuosine metabolic process
JR895_RS19980	COG3783	Cytochrome b(562)
JR895_RS19985	COG0312	modulator of DNA gyrase
JR895_RS19995	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JR895_RS20005	COG1172	Belongs to the binding-protein-dependent transport system permease family
JR895_RS20010	COG1172	Belongs to the binding-protein-dependent transport system permease family
JR895_RS20015	COG1129	ABC transporter
JR895_RS20020	COG1879	ABC-type sugar transport system periplasmic component
JR895_RS20025	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JR895_RS20030	COG2105	PFAM AIG2 family protein
JR895_RS20035	COG2911	Protein conserved in bacteria
JR895_RS20040	COG0729	surface antigen
JR895_RS20050	COG1253	flavin adenine dinucleotide binding
JR895_RS20060	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JR895_RS20065	COG1218	3'(2'),5'-bisphosphate nucleotidase
JR895_RS20075	COG1733	regulation of RNA biosynthetic process
JR895_RS20080	COG0702	epimerase
JR895_RS20085	COG0697	spore germination
JR895_RS20095	COG1113	amino acid transport
JR895_RS20100	COG0545	Peptidyl-prolyl cis-trans isomerase
JR895_RS20105	COG3061	Opacity-associated protein A
JR895_RS20110	COG1309	transcriptional regulator
JR895_RS20115	COG1028	Short-chain dehydrogenase reductase Sdr
JR895_RS20125	COG1024	Enoyl-CoA hydratase
JR895_RS20130	COG4670	ketone body catabolic process
JR895_RS20135	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JR895_RS20140	COG2271	Major facilitator Superfamily
JR895_RS20155	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JR895_RS20195	COG3414	Phosphotransferase system galactitol-specific IIB component
JR895_RS20200	COG3037	sugar-specific permease SgaT UlaA
JR895_RS20215	COG1073	alpha beta
JR895_RS20220	COG3650	response to hydrogen peroxide
JR895_RS20230	COG1960	acyl-CoA dehydrogenase activity
JR895_RS20235	COG0754	glutathionylspermidine amidase activity
JR895_RS20240	COG5463	Belongs to the UPF0441 family
JR895_RS20245	COG3766	membrane
JR895_RS20255	COG1842	Phage shock protein A
JR895_RS20260	COG3789	protein conserved in bacteria
JR895_RS20265	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JR895_RS20270	COG0557	exoribonuclease II activity
JR895_RS20285	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
JR895_RS20290	COG0330	HflC and HflK could
JR895_RS20295	COG0330	HflC and HflK could
JR895_RS20300	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JR895_RS20320	COG0860	N-Acetylmuramoyl-L-alanine amidase
JR895_RS20325	COG0802	atpase or kinase
JR895_RS20330	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JR895_RS20330	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JR895_RS20335	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JR895_RS20375	COG1511	domain protein
JR895_RS20375	COG3264	Mechanosensitive ion channel
JR895_RS20380	COG0531	amino acid
JR895_RS20390	COG1053	succinate dehydrogenase
JR895_RS20395	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JR895_RS20410	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JR895_RS20415	COG3040	lipid binding
JR895_RS20420	COG2076	Multidrug Resistance protein
JR895_RS20425	COG5510	response to toxic substance
JR895_RS20430	COG5510	response to toxic substance
JR895_RS20440	COG1509	lysine 2,3-aminomutase activity
JR895_RS20465	COG0531	amino acid
JR895_RS20470	COG3030	protein affecting phage T7 exclusion by the F plasmid
JR895_RS20475	COG1027	Aspartate ammonia-lyase
JR895_RS20480	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JR895_RS20495	COG1309	transcriptional regulator
JR895_RS20505	COG3710	Transcriptional regulator
JR895_RS20510	COG0531	amino acid
JR895_RS20515	COG1982	Orn Lys Arg decarboxylase major
JR895_RS20520	COG3104	oligopeptide transport
JR895_RS20525	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JR895_RS20540	COG2388	GCN5-related N-acetyl-transferase
JR895_RS20545	COG3592	Divergent 4Fe-4S mono-cluster
JR895_RS20550	COG3290	protein histidine kinase activity
JR895_RS20555	COG4565	transcriptional regulatory protein
JR895_RS20560	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JR895_RS20565	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
JR895_RS20565	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
JR895_RS20570	COG3647	Membrane
JR895_RS20575	COG2211	Major facilitator Superfamily
JR895_RS20580	COG1486	melibiose metabolic process
JR895_RS20585	COG2169	Transcriptional regulator
JR895_RS20590	COG1982	Orn Lys Arg decarboxylase major
JR895_RS20595	COG2207	Transcriptional regulator
JR895_RS20600	COG0531	amino acid
JR895_RS20605	COG2194	sulfuric ester hydrolase activity
JR895_RS20610	COG0745	RESPONSE REGULATOR receiver
JR895_RS20615	COG0642	Histidine kinase
JR895_RS20625	COG0477	Major facilitator Superfamily
JR895_RS20635	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JR895_RS20640	COG2824	Alkylphosphonate utilization operon protein PhnA
JR895_RS20645	COG2764	glyoxalase bleomycin resistance protein dioxygenase
JR895_RS20650	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JR895_RS20655	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
JR895_RS20665	COG2188	Transcriptional regulator
JR895_RS20670	COG3624	Phosphonate C-P lyase system protein PhnG
JR895_RS20675	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
JR895_RS20680	COG3627	carbon phosphorus lyase activity
JR895_RS20685	COG4107	phosphonate C-P lyase system protein PhnK
JR895_RS20690	COG4778	phosphonate C-P lyase system protein PhnL
JR895_RS20695	COG3454	Phosphonate metabolism
JR895_RS20700	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
JR895_RS20705	COG0456	acetyltransferase
JR895_RS20710	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JR895_RS20720	COG0698	ribose 5-phosphate isomerase
JR895_RS20725	COG1737	Transcriptional regulator
JR895_RS20730	COG1879	ABC-type sugar transport system periplasmic component
JR895_RS20735	COG1129	ABC transporter
JR895_RS20740	COG1172	Belongs to the binding-protein-dependent transport system permease family
JR895_RS20745	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JR895_RS20750	COG1940	carbohydrate kinase activity
JR895_RS20755	COG2015	COG2015, Alkyl sulfatase and related hydrolases
JR895_RS20765	COG1566	PFAM secretion protein HlyD family protein
JR895_RS20770	COG1289	transmembrane transporter activity
JR895_RS20775	COG1538	Outer membrane efflux protein
JR895_RS20785	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JR895_RS20790	COG1301	dicarboxylic acid transport
JR895_RS20795	COG4235	cytochrome complex assembly
JR895_RS20800	COG3088	subunit of a heme lyase
JR895_RS20805	COG1138	Cytochrome C-type biogenesis protein
JR895_RS20810	COG3301	Polysulphide reductase, NrfD
JR895_RS20815	COG0437	4 iron, 4 sulfur cluster binding
JR895_RS20820	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
JR895_RS20830	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JR895_RS20835	COG3162	membrane
JR895_RS20845	COG1357	PFAM Pentapeptide repeats (8 copies)
JR895_RS20850	COG0025	NhaP-type Na H and K H
JR895_RS20855	COG2252	PERMEase
JR895_RS20860	COG0789	Transcriptional regulator
JR895_RS20865	COG2207	Transcriptional regulator
JR895_RS20870	COG4943	cyclic-guanylate-specific phosphodiesterase activity
JR895_RS20880	COG0629	single-stranded DNA binding
JR895_RS20885	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JR895_RS20890	COG2315	Protein conserved in bacteria
JR895_RS20895	COG0432	Pfam Uncharacterised protein family UPF0047
JR895_RS20900	COG3700	Belongs to the class B bacterial acid phosphatase family
JR895_RS20910	COG1448	Aminotransferase
JR895_RS20915	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JR895_RS20920	COG0305	Participates in initiation and elongation during chromosome replication
JR895_RS20925	COG0604	alcohol dehydrogenase
JR895_RS20935	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JR895_RS20945	COG0735	belongs to the Fur family
JR895_RS20950	COG3237	CsbD-like
JR895_RS20955	COG0534	Mate efflux family protein
JR895_RS20965	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JR895_RS21000	COG3842	ATPase activity
JR895_RS21005	COG2182	Extracellular solute-binding protein
JR895_RS21010	COG1175	transmembrane transport
JR895_RS21015	COG3833	ABC-type maltose transport systems, permease component
JR895_RS21020	COG0477	Major facilitator Superfamily
JR895_RS21020	COG2814	Major facilitator Superfamily
JR895_RS21040	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JR895_RS21065	COG0527	aspartate kinase activity
JR895_RS21075	COG1187	pseudouridine synthase activity
JR895_RS21120	COG1283	sodium-dependent phosphate transmembrane transporter activity
JR895_RS21125	COG1410	methionine synthase
JR895_RS21125	COG0646	methionine synthase
JR895_RS21130	COG1414	Transcriptional regulator
JR895_RS21145	COG2224	Isocitrate lyase
JR895_RS21150	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JR895_RS21160	COG0456	acetyltransferase
JR895_RS21190	COG0151	Belongs to the GarS family
JR895_RS21195	COG2204	response regulator
JR895_RS21200	COG4191	Histidine kinase
JR895_RS21205	COG3678	ATP-independent chaperone mediated protein folding
JR895_RS21220	COG3068	Protein conserved in bacteria
JR895_RS21255	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JR895_RS21260	COG2104	thiamine diphosphate biosynthetic process
JR895_RS21270	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JR895_RS21310	COG0250	Participates in transcription elongation, termination and antitermination
JR895_RS21315	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JR895_RS21350	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
JR895_RS21350	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
JR895_RS21355	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JR895_RS21380	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JR895_RS21385	COG4206	TonB-dependent receptor
JR895_RS21400	COG1309	transcriptional regulator
JR895_RS21410	COG0583	DNA-binding transcription factor activity
JR895_RS21425	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JR895_RS21440	COG2194	sulfuric ester hydrolase activity
JR895_RS21445	COG2207	Transcriptional regulator
JR895_RS21450	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS21455	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JR895_RS21460	COG1882	Formate acetyltransferase
JR895_RS21465	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS21470	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS21475	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS21475	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS21475	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JR895_RS21480	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JR895_RS21485	COG0371	Dehydrogenase
JR895_RS21490	COG3738	Protein conserved in bacteria
JR895_RS21495	COG0697	spore germination
JR895_RS21505	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
JR895_RS21510	COG0527	aspartate kinase activity
JR895_RS21510	COG0460	homoserine dehydrogenase
JR895_RS21515	COG0626	cystathionine gamma-synthase activity
JR895_RS21525	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
JR895_RS21535	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JR895_RS21540	COG1609	Transcriptional regulator
JR895_RS21545	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JR895_RS21560	COG1575	Belongs to the MenA family. Type 1 subfamily
JR895_RS21575	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JR895_RS21585	COG1494	fructose-1,6-bisphosphatase
JR895_RS21590	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JR895_RS21595	COG0589	response to stress
JR895_RS21600	COG3691	Protein conserved in bacteria
JR895_RS21605	COG3152	Membrane
JR895_RS21625	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JR895_RS21640	COG3678	ATP-independent chaperone mediated protein folding
JR895_RS21645	COG0745	RESPONSE REGULATOR receiver
JR895_RS21650	COG2205	protein histidine kinase activity
JR895_RS21655	COG2258	MOSC domain
JR895_RS21665	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JR895_RS21675	COG1917	Cupin 2, conserved barrel domain protein
JR895_RS21675	COG4977	sequence-specific DNA binding
JR895_RS21710	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS21715	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS21715	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JR895_RS21720	COG1363	Peptidase, m42
JR895_RS21725	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JR895_RS21725	COG3711	transcriptional antiterminator
JR895_RS21745	COG0437	4 iron, 4 sulfur cluster binding
JR895_RS21750	COG2864	formate dehydrogenase
JR895_RS21760	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JR895_RS21765	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JR895_RS21770	COG0456	acetyltransferase
JR895_RS21785	COG1011	Hydrolase
JR895_RS21790	COG1349	DNA-binding transcription factor activity
JR895_RS21795	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JR895_RS21800	COG2084	Dehydrogenase
JR895_RS21805	COG3684	Belongs to the aldolase LacD family
JR895_RS21810	COG2942	2-epimerase
JR895_RS21815	COG2017	converts alpha-aldose to the beta-anomer
JR895_RS21820	COG1501	Belongs to the glycosyl hydrolase 31 family
JR895_RS21825	COG2211	Major facilitator Superfamily
JR895_RS21830	COG2211	Major facilitator Superfamily
JR895_RS21835	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JR895_RS21840	COG2271	Major facilitator Superfamily
JR895_RS21845	COG1082	Xylose isomerase domain protein TIM barrel
JR895_RS21850	COG2188	Transcriptional regulator
JR895_RS21855	COG1217	gtp-binding protein TYPA
JR895_RS21860	COG0174	glutamine synthetase
JR895_RS21865	COG3852	Histidine kinase
JR895_RS21870	COG2204	response regulator
JR895_RS21880	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JR895_RS21885	COG3078	GTPase activator activity
JR895_RS21895	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JR895_RS21895	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JR895_RS21900	COG0204	Acyl-transferase
JR895_RS21905	COG5339	Protein conserved in bacteria
JR895_RS21910	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JR895_RS21915	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JR895_RS21920	COG3084	Protein conserved in bacteria
JR895_RS21925	COG0746	molybdenum cofactor guanylyltransferase activity
JR895_RS21930	COG1763	Mo-molybdopterin cofactor biosynthetic process
JR895_RS21960	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
JR895_RS21965	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JR895_RS21970	COG1739	Uncharacterized protein family UPF0029
JR895_RS21985	COG0183	Belongs to the thiolase family
JR895_RS21990	COG0543	2 iron, 2 sulfur cluster binding
JR895_RS21995	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JR895_RS22000	COG0250	Participates in transcription elongation, termination and antitermination
JR895_RS22005	COG0084	hydrolase, TatD family'
JR895_RS22010	COG0805	protein transport
JR895_RS22015	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JR895_RS22020	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JR895_RS22030	COG3165	ubiquinone biosynthetic process from chorismate
JR895_RS22040	COG1322	Protein conserved in bacteria
JR895_RS22045	COG1414	Transcriptional regulator
JR895_RS22050	COG3734	2-keto-3-deoxy-galactonokinase
JR895_RS22055	COG0800	Aldolase
JR895_RS22075	COG1216	Glycosyl transferase, family 2
JR895_RS22100	COG2244	polysaccharide biosynthetic process
JR895_RS22110	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JR895_RS22115	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JR895_RS22130	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
JR895_RS22135	COG0412	Dienelactone hydrolase
JR895_RS22140	COG1335	isochorismatase
JR895_RS22150	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JR895_RS22155	COG1304	FMN binding
JR895_RS22160	COG0549	Belongs to the carbamate kinase family
JR895_RS22170	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JR895_RS22175	COG0583	DNA-binding transcription factor activity
JR895_RS22185	COG0583	DNA-binding transcription factor activity
JR895_RS22190	COG0697	spore germination
JR895_RS22195	COG0561	phosphatase activity
JR895_RS22200	COG2267	carboxylic ester hydrolase activity
JR895_RS22205	COG1280	lysine exporter protein (LysE YggA)
JR895_RS22210	COG1280	lysine exporter protein (LysE YggA)
JR895_RS22215	COG0514	ATP-dependent DNA helicase (RecQ)
JR895_RS22220	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
JR895_RS22225	COG2050	protein possibly involved in aromatic compounds catabolism
JR895_RS22230	COG2962	Rard protein
JR895_RS22245	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS22255	COG0598	Magnesium transport protein CorA
JR895_RS22260	COG3698	Phosphodiester glycosidase
JR895_RS22265	COG0210	DNA helicase
JR895_RS22270	COG1011	Hydrolase
JR895_RS22280	COG3159	Protein conserved in bacteria
JR895_RS22290	COG5567	small periplasmic lipoprotein
JR895_RS22300	COG3072	Adenylate cyclase
JR895_RS22310	COG1587	Uroporphyrinogen-III synthase
JR895_RS22315	COG2959	enzyme of heme biosynthesis
JR895_RS22320	COG3071	HemY protein
JR895_RS22325	COG3119	arylsulfatase activity
JR895_RS22330	COG0641	radical SAM
JR895_RS22355	COG1113	amino acid transport
JR895_RS22375	COG2244	polysaccharide biosynthetic process
JR895_RS22380	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JR895_RS22385	COG0456	acetyltransferase
JR895_RS22390	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JR895_RS22395	COG1088	dTDP-glucose 4,6-dehydratase activity
JR895_RS22400	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
JR895_RS22405	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JR895_RS22410	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
JR895_RS22415	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JR895_RS22420	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JR895_RS22430	COG3118	belongs to the thioredoxin family
JR895_RS22445	COG0210	DNA helicase
JR895_RS22450	COG3692	DNA binding
JR895_RS22455	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JR895_RS22465	COG0583	DNA-binding transcription factor activity
JR895_RS22470	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JR895_RS22480	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JR895_RS22485	COG3978	acetolactate synthase activity
JR895_RS22505	COG0606	chelatase, subunit chli
JR895_RS22510	COG3085	chromosome segregation
JR895_RS22550	COG2186	Transcriptional regulator
JR895_RS22555	COG0477	Major facilitator Superfamily
JR895_RS22560	COG1609	Transcriptional regulator
JR895_RS22565	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JR895_RS22570	COG1879	ABC-type sugar transport system periplasmic component
JR895_RS22575	COG1172	Belongs to the binding-protein-dependent transport system permease family
JR895_RS22580	COG1129	ABC transporter
JR895_RS22610	COG1522	sequence-specific DNA binding
JR895_RS22615	COG0716	FMN binding
JR895_RS22630	COG3312	ion transport
JR895_RS22680	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JR895_RS22685	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JR895_RS22690	COG0573	inorganic phosphate transmembrane transporter activity
JR895_RS22695	COG0581	inorganic phosphate transmembrane transporter activity
JR895_RS22700	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JR895_RS22705	COG0704	Plays a role in the regulation of phosphate uptake
JR895_RS22710	COG3711	transcriptional antiterminator
JR895_RS22715	COG2190	(PTS) system
JR895_RS22715	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JR895_RS22715	COG1263	PTS System
JR895_RS22720	COG2723	6-phospho-beta-galactosidase activity
JR895_RS22730	COG2382	esterase
JR895_RS22735	COG0363	glucosamine-6-phosphate deaminase activity
JR895_RS22740	COG3196	Protein conserved in bacteria
JR895_RS22750	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JR895_RS22755	COG2252	PERMEase
JR895_RS22760	COG0431	NADPH-dependent FMN reductase
JR895_RS22765	COG2091	lysine biosynthetic process via aminoadipic acid
JR895_RS22780	COG0814	amino acid
JR895_RS22910	COG0210	DNA helicase
JR895_RS23065	COG0589	response to stress
JR895_RS23070	COG0659	secondary active sulfate transmembrane transporter activity
JR895_RS23205	COG4221	oxidoreductase activity
JR895_RS23290	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JR895_RS23340	COG4644	lycopene metabolic process
JR895_RS23475	COG2826	transposase and inactivated derivatives, IS30 family
JR895_RS23565	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JR895_RS23635	COG0445	tRNA wobble uridine modification
JR895_RS23670	COG1192	Involved in chromosome partitioning