AM440_RS00010	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AM440_RS00020	SM00841	Elongation factor P, C-terminal
AM440_RS00020	SM01185	AM440_RS00020
AM440_RS00065	SM00100	Cyclic nucleotide-monophosphate binding domain
AM440_RS00085	SM00518	AP endonuclease family 2
AM440_RS00150	SM00354	helix_turn _helix lactose operon repressor
AM440_RS00160	SM00382	ATPases associated with a variety of cellular activities
AM440_RS00255	SM01217	AM440_RS00255
AM440_RS00270	SM00382	ATPases associated with a variety of cellular activities
AM440_RS00285	SM00422	helix_turn_helix, mercury resistance
AM440_RS00290	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM440_RS00295	SM00448	cheY-homologous receiver domain
AM440_RS00295	SM00850	LytTr DNA-binding domain
AM440_RS00315	SM00327	von Willebrand factor (vWF) type A domain
AM440_RS00325	SM00382	ATPases associated with a variety of cellular activities
AM440_RS00420	SM00641	Glycosyl hydrolases family 25
AM440_RS00425	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS00425	SM00866	AM440_RS00425
AM440_RS00445	SM01133	AM440_RS00445
AM440_RS00475	SM00829	Enoylreductase
AM440_RS00480	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS00480	SM01134	AM440_RS00480
AM440_RS00485	SM00046	Diacylglycerol kinase catalytic domain (presumed)
AM440_RS00510	SM00448	cheY-homologous receiver domain
AM440_RS00510	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS00515	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS00515	SM00387	Histidine kinase-like ATPases
AM440_RS00515	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS00545	SM00327	von Willebrand factor (vWF) type A domain
AM440_RS00570	SM00478	endonuclease III
AM440_RS00570	SM01009	AlkA N-terminal domain
AM440_RS00575	SM00052	Putative diguanylate phosphodiesterase
AM440_RS00575	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AM440_RS00575	SM00091	PAS domain
AM440_RS00575	SM00267	diguanylate cyclase
AM440_RS00595	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM440_RS00595	SM01091	Transporter associated domain
AM440_RS00605	SM00226	Low molecular weight phosphatase family
AM440_RS00775	SM01350	AM440_RS00775
AM440_RS00780	SM00984	UDP binding domain
AM440_RS00870	SM00479	AM440_RS00870
AM440_RS00875	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM440_RS00880	SM00871	Bacterial transcription activator, effector binding domain
AM440_RS00950	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS00950	SM01134	AM440_RS00950
AM440_RS01150	SM00095	Transthyretin
AM440_RS01165	SM00448	cheY-homologous receiver domain
AM440_RS01165	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS01170	SM00387	Histidine kinase-like ATPases
AM440_RS01170	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS01195	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM440_RS01230	SM00267	diguanylate cyclase
AM440_RS01255	SM00421	helix_turn_helix, Lux Regulon
AM440_RS01305	SM00382	ATPases associated with a variety of cellular activities
AM440_RS01370	SM00642	Alpha-amylase domain
AM440_RS01410	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS01410	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM440_RS01425	SM00382	ATPases associated with a variety of cellular activities
AM440_RS01430	SM00421	helix_turn_helix, Lux Regulon
AM440_RS01440	SM00421	helix_turn_helix, Lux Regulon
AM440_RS01440	SM00448	cheY-homologous receiver domain
AM440_RS01445	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM440_RS01445	SM00465	GIY-YIG type nucleases (URI domain)
AM440_RS01520	SM00382	ATPases associated with a variety of cellular activities
AM440_RS01565	SM00073	Histidine Phosphotransfer domain
AM440_RS01565	SM00260	Two component signalling adaptor domain
AM440_RS01565	SM00387	Histidine kinase-like ATPases
AM440_RS01565	SM01231	AM440_RS01565
AM440_RS01570	SM00260	Two component signalling adaptor domain
AM440_RS01575	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM440_RS01575	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS01575	SM00319	Homologues of the ligand binding domain of Tar
AM440_RS01580	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM440_RS01580	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS01580	SM00319	Homologues of the ligand binding domain of Tar
AM440_RS01585	SM00138	Methyltransferase, chemotaxis proteins 
AM440_RS01590	SM00448	cheY-homologous receiver domain
AM440_RS01595	SM00448	cheY-homologous receiver domain
AM440_RS01625	SM00836	DALR anticodon binding domain
AM440_RS01625	SM01016	Arginyl tRNA synthetase N terminal dom
AM440_RS01710	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM440_RS01715	SM00382	ATPases associated with a variety of cellular activities
AM440_RS01725	SM00382	ATPases associated with a variety of cellular activities
AM440_RS01735	SM00257	Lysin motif
AM440_RS01800	SM00479	AM440_RS01800
AM440_RS01860	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM440_RS01865	SM00945	ProQ/FINO family
AM440_RS01870	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM440_RS01870	SM00245	tail specific protease
AM440_RS01885	SM00346	helix_turn_helix isocitrate lyase regulation
AM440_RS01915	SM00357	Cold shock protein domain
AM440_RS01965	SM01091	Transporter associated domain
AM440_RS01970	SM00052	Putative diguanylate phosphodiesterase
AM440_RS02015	SM00487	DEAD-like helicases superfamily
AM440_RS02015	SM00491	AM440_RS02015
AM440_RS02035	SM00341	Helicase and RNase D C-terminal
AM440_RS02035	SM00474	3'-5' exonuclease
AM440_RS02055	SM01329	AM440_RS02055
AM440_RS02095	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM440_RS02095	SM00267	diguanylate cyclase
AM440_RS02115	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS02135	SM00267	diguanylate cyclase
AM440_RS02140	SM00267	diguanylate cyclase
AM440_RS02150	SM00763	PrkA AAA domain
AM440_RS02170	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM440_RS02195	SM00829	Enoylreductase
AM440_RS02225	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS02225	SM01134	AM440_RS02225
AM440_RS02240	SM00870	AM440_RS02240
AM440_RS02270	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AM440_RS02270	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AM440_RS02270	SM00493	AM440_RS02270
AM440_RS02280	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AM440_RS02300	SM00450	Rhodanese Homology Domain
AM440_RS02305	SM00382	ATPases associated with a variety of cellular activities
AM440_RS02385	SM00465	GIY-YIG type nucleases (URI domain)
AM440_RS02420	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS02435	SM01060	AM440_RS02435
AM440_RS02505	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AM440_RS02530	SM00873	B3/4 domain
AM440_RS02530	SM00874	tRNA synthetase B5 domain
AM440_RS02530	SM00896	Ferredoxin-fold anticodon binding domain
AM440_RS02535	SM00411	bacterial (prokaryotic) histone like domain
AM440_RS02550	SM00382	ATPases associated with a variety of cellular activities
AM440_RS02610	SM00893	Electron transfer flavoprotein domain
AM440_RS02615	SM00893	Electron transfer flavoprotein domain
AM440_RS02625	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS02635	SM00882	Coenzyme A transferase
AM440_RS02705	SM00382	ATPases associated with a variety of cellular activities
AM440_RS02725	SM00257	Lysin motif
AM440_RS02750	SM00790	Aldehyde ferredoxin oxidoreductase, N-terminal domain
AM440_RS02825	SM00354	helix_turn _helix lactose operon repressor
AM440_RS02860	SM00382	ATPases associated with a variety of cellular activities
AM440_RS02860	SM00487	DEAD-like helicases superfamily
AM440_RS02860	SM00490	helicase superfamily c-terminal domain
AM440_RS02865	SM00479	AM440_RS02865
AM440_RS02915	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM440_RS02940	SM00363	S4 RNA-binding domain
AM440_RS02965	SM00478	endonuclease III
AM440_RS02965	SM00525	AM440_RS02965
AM440_RS02975	SM00900	AM440_RS02975
AM440_RS03040	SM00354	helix_turn _helix lactose operon repressor
AM440_RS03095	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS03095	SM00387	Histidine kinase-like ATPases
AM440_RS03095	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS03100	SM00448	cheY-homologous receiver domain
AM440_RS03100	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS03130	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AM440_RS03130	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AM440_RS03215	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM440_RS03220	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM440_RS03255	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM440_RS03280	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS03280	SM00895	AM440_RS03280
AM440_RS03305	SM00267	diguanylate cyclase
AM440_RS03325	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS03325	SM00866	AM440_RS03325
AM440_RS03365	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS03370	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM440_RS03415	SM00267	diguanylate cyclase
AM440_RS03450	SM01133	AM440_RS03450
AM440_RS03470	SM00382	ATPases associated with a variety of cellular activities
AM440_RS03485	SM00869	Autotransporter beta-domain
AM440_RS03490	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS03525	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS03540	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS03555	SM00487	DEAD-like helicases superfamily
AM440_RS03595	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS03610	SM00382	ATPases associated with a variety of cellular activities
AM440_RS03645	SM00267	diguanylate cyclase
AM440_RS03650	SM00052	Putative diguanylate phosphodiesterase
AM440_RS03650	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AM440_RS03650	SM00091	PAS domain
AM440_RS03650	SM00267	diguanylate cyclase
AM440_RS03675	SM00382	ATPases associated with a variety of cellular activities
AM440_RS03680	SM00382	ATPases associated with a variety of cellular activities
AM440_RS03705	SM00919	Malic enzyme, NAD binding domain
AM440_RS03705	SM01274	AM440_RS03705
AM440_RS03710	SM00829	Enoylreductase
AM440_RS03715	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS03770	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM440_RS03800	SM00903	Flavin reductase like domain
AM440_RS03855	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS03855	SM00895	AM440_RS03855
AM440_RS03860	SM00829	Enoylreductase
AM440_RS03915	SM00382	ATPases associated with a variety of cellular activities
AM440_RS03925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS03930	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS03950	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS03965	SM01321	AM440_RS03965
AM440_RS04015	SM01150	AM440_RS04015
AM440_RS04025	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM440_RS04025	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS04025	SM00319	Homologues of the ligand binding domain of Tar
AM440_RS04045	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM440_RS04060	SM00382	ATPases associated with a variety of cellular activities
AM440_RS04060	SM00487	DEAD-like helicases superfamily
AM440_RS04060	SM00490	helicase superfamily c-terminal domain
AM440_RS04060	SM00847	Helicase associated domain (HA2)  Add an annotation
AM440_RS04070	SM00195	Dual specificity phosphatase, catalytic domain
AM440_RS04070	SM00404	Protein tyrosine phosphatase, catalytic domain motif
AM440_RS04190	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS04225	SM00890	Domain of unknown function
AM440_RS04250	SM00857	Resolvase, N terminal domain
AM440_RS04280	SM00470	ParB-like nuclease domain
AM440_RS04360	SM00487	DEAD-like helicases superfamily
AM440_RS04360	SM00490	helicase superfamily c-terminal domain
AM440_RS04375	SM00091	PAS domain
AM440_RS04375	SM00267	diguanylate cyclase
AM440_RS04380	SM00463	Small MutS-related domain
AM440_RS04420	SM00100	Cyclic nucleotide-monophosphate binding domain
AM440_RS04420	SM00419	helix_turn_helix, cAMP Regulatory protein
AM440_RS04465	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM440_RS04475	SM00091	PAS domain
AM440_RS04475	SM00382	ATPases associated with a variety of cellular activities
AM440_RS04490	SM00354	helix_turn _helix lactose operon repressor
AM440_RS04515	SM00450	Rhodanese Homology Domain
AM440_RS04540	SM00382	ATPases associated with a variety of cellular activities
AM440_RS04565	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS04575	SM01230	AM440_RS04575
AM440_RS04610	SM00382	ATPases associated with a variety of cellular activities
AM440_RS04615	SM00382	ATPases associated with a variety of cellular activities
AM440_RS04640	SM00357	Cold shock protein domain
AM440_RS04640	SM00955	AM440_RS04640
AM440_RS04650	SM00052	Putative diguanylate phosphodiesterase
AM440_RS04650	SM00091	PAS domain
AM440_RS04650	SM00267	diguanylate cyclase
AM440_RS04660	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS04660	SM01134	AM440_RS04660
AM440_RS04675	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AM440_RS04680	SM00028	Tetratricopeptide repeats
AM440_RS04690	SM00014	Acid phosphatase homologues
AM440_RS04730	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AM440_RS04730	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AM440_RS04730	SM00493	AM440_RS04730
AM440_RS04750	SM00822	AM440_RS04750
AM440_RS04760	SM00363	S4 RNA-binding domain
AM440_RS04775	SM00481	DNA polymerase alpha chain like domain
AM440_RS04865	SM00155	Phospholipase D. Active site motifs.
AM440_RS04875	SM00382	ATPases associated with a variety of cellular activities
AM440_RS04880	SM00382	ATPases associated with a variety of cellular activities
AM440_RS04920	SM00528	Domain in histone-like proteins of HNS family
AM440_RS04930	SM00448	cheY-homologous receiver domain
AM440_RS04985	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM440_RS05000	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS05000	SM00387	Histidine kinase-like ATPases
AM440_RS05005	SM00421	helix_turn_helix, Lux Regulon
AM440_RS05005	SM00448	cheY-homologous receiver domain
AM440_RS05065	SM00937	AM440_RS05065
AM440_RS05085	SM01400	AM440_RS05085
AM440_RS05120	SM00869	Autotransporter beta-domain
AM440_RS05125	SM00091	PAS domain
AM440_RS05125	SM00382	ATPases associated with a variety of cellular activities
AM440_RS05135	SM01120	AM440_RS05135
AM440_RS05195	SM01091	Transporter associated domain
AM440_RS05200	SM01005	Alanine racemase, C-terminal domain
AM440_RS05215	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS05345	SM00052	Putative diguanylate phosphodiesterase
AM440_RS05370	SM00052	Putative diguanylate phosphodiesterase
AM440_RS05370	SM01034	Sensors of blue-light using FAD
AM440_RS05375	SM00422	helix_turn_helix, mercury resistance
AM440_RS05390	SM01329	AM440_RS05390
AM440_RS05420	SM00448	cheY-homologous receiver domain
AM440_RS05420	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS05425	SM00387	Histidine kinase-like ATPases
AM440_RS05430	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
AM440_RS05445	SM00382	ATPases associated with a variety of cellular activities
AM440_RS05490	SM00382	ATPases associated with a variety of cellular activities
AM440_RS05505	SM00487	DEAD-like helicases superfamily
AM440_RS05505	SM00490	helicase superfamily c-terminal domain
AM440_RS05505	SM00982	AM440_RS05505
AM440_RS05505	SM01058	CarD-like/TRCF domain
AM440_RS05510	SM00257	Lysin motif
AM440_RS05605	SM00825	Beta-ketoacyl synthase
AM440_RS05615	SM00822	AM440_RS05615
AM440_RS05620	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AM440_RS05650	SM00363	S4 RNA-binding domain
AM440_RS05660	SM00316	Ribosomal protein S1-like RNA-binding domain
AM440_RS05675	SM00047	Lysozyme subfamily 2
AM440_RS05720	SM00858	AM440_RS05720
AM440_RS05800	SM00867	YceI-like domain 
AM440_RS05805	SM00450	Rhodanese Homology Domain
AM440_RS05855	SM00155	Phospholipase D. Active site motifs.
AM440_RS05860	SM00506	Appr-1"-p processing enzyme
AM440_RS05895	SM00421	helix_turn_helix, Lux Regulon
AM440_RS05925	SM00481	DNA polymerase alpha chain like domain
AM440_RS05945	SM00267	diguanylate cyclase
AM440_RS05950	SM00028	Tetratricopeptide repeats
AM440_RS06050	SM00903	Flavin reductase like domain
AM440_RS06095	SM00271	DnaJ molecular chaperone homology domain
AM440_RS06120	SM00448	cheY-homologous receiver domain
AM440_RS06120	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS06130	SM00073	Histidine Phosphotransfer domain
AM440_RS06130	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS06130	SM00387	Histidine kinase-like ATPases
AM440_RS06130	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS06130	SM00448	cheY-homologous receiver domain
AM440_RS06155	SM00357	Cold shock protein domain
AM440_RS06160	SM00357	Cold shock protein domain
AM440_RS06190	SM00226	Low molecular weight phosphatase family
AM440_RS06270	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AM440_RS06275	SM00992	Hemimethylated DNA-binding protein YccV like
AM440_RS06280	SM00881	CoA binding domain
AM440_RS06290	SM00851	MGS-like domain
AM440_RS06365	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06370	SM00981	AM440_RS06370
AM440_RS06435	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS06450	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06490	SM00849	Metallo-beta-lactamase superfamily
AM440_RS06560	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06565	SM00849	Metallo-beta-lactamase superfamily
AM440_RS06570	SM00411	bacterial (prokaryotic) histone like domain
AM440_RS06575	SM00316	Ribosomal protein S1-like RNA-binding domain
AM440_RS06660	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM440_RS06670	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06680	SM00843	AM440_RS06680
AM440_RS06685	SM00344	helix_turn_helix ASNC type
AM440_RS06700	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06705	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06720	SM00316	Ribosomal protein S1-like RNA-binding domain
AM440_RS06730	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06730	SM01086	C-terminal, D2-small domain, of ClpB protein
AM440_RS06740	SM00357	Cold shock protein domain
AM440_RS06745	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06810	SM00644	AM440_RS06810
AM440_RS06825	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06830	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS06830	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM440_RS06845	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS06845	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM440_RS06870	SM00382	ATPases associated with a variety of cellular activities
AM440_RS06945	SM00014	Acid phosphatase homologues
AM440_RS06950	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS06950	SM01134	AM440_RS06950
AM440_RS06955	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM440_RS06975	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM440_RS06980	SM00267	diguanylate cyclase
AM440_RS06985	SM00052	Putative diguanylate phosphodiesterase
AM440_RS07005	SM00382	ATPases associated with a variety of cellular activities
AM440_RS07015	SM00852	Probable molybdopterin binding domain
AM440_RS07050	SM00382	ATPases associated with a variety of cellular activities
AM440_RS07065	SM00529	Helix-turn-helix diphteria tox regulatory element
AM440_RS07110	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS07110	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AM440_RS07120	SM00382	ATPases associated with a variety of cellular activities
AM440_RS07145	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
AM440_RS07170	SM00487	DEAD-like helicases superfamily
AM440_RS07170	SM00488	AM440_RS07170
AM440_RS07170	SM00491	AM440_RS07170
AM440_RS07185	SM00487	DEAD-like helicases superfamily
AM440_RS07185	SM00490	helicase superfamily c-terminal domain
AM440_RS07200	SM00382	ATPases associated with a variety of cellular activities
AM440_RS07225	SM00155	Phospholipase D. Active site motifs.
AM440_RS07260	SM00852	Probable molybdopterin binding domain
AM440_RS07265	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM440_RS07275	SM00487	DEAD-like helicases superfamily
AM440_RS07275	SM00490	helicase superfamily c-terminal domain
AM440_RS07295	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM440_RS07295	SM00876	Biotin and Thiamin Synthesis associated domain
AM440_RS07350	SM00382	ATPases associated with a variety of cellular activities
AM440_RS07380	SM00382	ATPases associated with a variety of cellular activities
AM440_RS07405	SM00855	Phosphoglycerate mutase family
AM440_RS07535	SM00872	Alpha mannosidase, middle domain
AM440_RS07545	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS07545	SM00866	AM440_RS07545
AM440_RS07550	SM00881	CoA binding domain
AM440_RS07565	SM00861	Transketolase, pyrimidine binding domain
AM440_RS07630	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AM440_RS07630	SM01232	AM440_RS07630
AM440_RS07640	SM00797	Allophanate hydrolase subunit 2
AM440_RS07645	SM00796	Allophanate hydrolase subunit 1
AM440_RS07730	SM00387	Histidine kinase-like ATPases
AM440_RS07730	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS07735	SM00448	cheY-homologous receiver domain
AM440_RS07735	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS07900	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM440_RS07915	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM440_RS07915	SM01091	Transporter associated domain
AM440_RS07935	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS07950	SM00382	ATPases associated with a variety of cellular activities
AM440_RS07975	SM00671	Sel1-like repeats.
AM440_RS07980	SM00271	DnaJ molecular chaperone homology domain
AM440_RS07990	SM00671	Sel1-like repeats.
AM440_RS08020	SM00855	Phosphoglycerate mutase family
AM440_RS08050	SM00936	Penicillin-binding protein 5, C-terminal domain 
AM440_RS08080	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM440_RS08100	SM00357	Cold shock protein domain
AM440_RS08120	SM00448	cheY-homologous receiver domain
AM440_RS08125	SM00091	PAS domain
AM440_RS08125	SM00387	Histidine kinase-like ATPases
AM440_RS08130	SM00764	Citrate lyase ligase C-terminal domain
AM440_RS08185	SM00829	Enoylreductase
AM440_RS08225	SM00470	ParB-like nuclease domain
AM440_RS08255	SM00822	AM440_RS08255
AM440_RS08300	SM00382	ATPases associated with a variety of cellular activities
AM440_RS08310	SM00823	Phosphopantetheine attachment site
AM440_RS08310	SM00824	Thioesterase
AM440_RS08315	SM00923	MbtH-like protein
AM440_RS08415	SM00448	cheY-homologous receiver domain
AM440_RS08415	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS08420	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS08420	SM00387	Histidine kinase-like ATPases
AM440_RS08420	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS08465	SM00028	Tetratricopeptide repeats
AM440_RS08480	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS08495	SM00421	helix_turn_helix, Lux Regulon
AM440_RS08495	SM00448	cheY-homologous receiver domain
AM440_RS08540	SM00840	AM440_RS08540
AM440_RS08560	SM01001	AIR carboxylase
AM440_RS08640	SM00346	helix_turn_helix isocitrate lyase regulation
AM440_RS08655	SM00450	Rhodanese Homology Domain
AM440_RS08665	SM00382	ATPases associated with a variety of cellular activities
AM440_RS08675	SM00822	AM440_RS08675
AM440_RS08690	SM00382	ATPases associated with a variety of cellular activities
AM440_RS08695	SM00244	prohibitin homologues
AM440_RS08705	SM00422	helix_turn_helix, mercury resistance
AM440_RS08730	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS08795	SM00387	Histidine kinase-like ATPases
AM440_RS08800	SM00493	AM440_RS08800
AM440_RS08810	SM00382	ATPases associated with a variety of cellular activities
AM440_RS08875	SM01266	AM440_RS08875
AM440_RS08885	SM00052	Putative diguanylate phosphodiesterase
AM440_RS08920	SM00938	Nitrogen regulatory protein P-II
AM440_RS08925	SM00382	ATPases associated with a variety of cellular activities
AM440_RS08930	SM00382	ATPases associated with a variety of cellular activities
AM440_RS08935	SM00344	helix_turn_helix ASNC type
AM440_RS08960	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM440_RS08970	SM00411	bacterial (prokaryotic) histone like domain
AM440_RS08975	SM00382	ATPases associated with a variety of cellular activities
AM440_RS08975	SM00464	Found in ATP-dependent protease La (LON)
AM440_RS08980	SM00382	ATPases associated with a variety of cellular activities
AM440_RS08980	SM00994	ClpX C4-type zinc finger
AM440_RS08980	SM01086	C-terminal, D2-small domain, of ClpB protein
AM440_RS09065	SM00981	AM440_RS09065
AM440_RS09080	SM00861	Transketolase, pyrimidine binding domain
AM440_RS09130	SM00507	HNH nucleases
AM440_RS09145	SM01323	AM440_RS09145
AM440_RS09165	SM00642	Alpha-amylase domain
AM440_RS09180	SM00091	PAS domain
AM440_RS09180	SM00387	Histidine kinase-like ATPases
AM440_RS09180	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS09185	SM00448	cheY-homologous receiver domain
AM440_RS09185	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS09260	SM00267	diguanylate cyclase
AM440_RS09270	SM00098	Alkaline phosphatase homologues
AM440_RS09325	SM00869	Autotransporter beta-domain
AM440_RS09335	SM01004	Delta-aminolevulinic acid dehydratase
AM440_RS09350	SM00382	ATPases associated with a variety of cellular activities
AM440_RS09355	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS09400	SM00829	Enoylreductase
AM440_RS09425	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM440_RS09450	SM00346	helix_turn_helix isocitrate lyase regulation
AM440_RS09455	SM00354	helix_turn _helix lactose operon repressor
AM440_RS09465	SM01038	Beta galactosidase small chain
AM440_RS09475	SM01266	AM440_RS09475
AM440_RS09485	SM01116	AM440_RS09485
AM440_RS09490	SM00947	Carbonic anhydrase
AM440_RS09530	SM00382	ATPases associated with a variety of cellular activities
AM440_RS09555	SM00829	Enoylreductase
AM440_RS09590	SM00248	ankyrin repeats
AM440_RS09610	SM00052	Putative diguanylate phosphodiesterase
AM440_RS09610	SM00421	helix_turn_helix, Lux Regulon
AM440_RS09680	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS09700	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS09700	SM00871	Bacterial transcription activator, effector binding domain
AM440_RS09745	SM00421	helix_turn_helix, Lux Regulon
AM440_RS09800	SM01092	CO dehydrogenase flavoprotein C-terminal domain
AM440_RS09805	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AM440_RS09970	SM00507	HNH nucleases
AM440_RS10080	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS10155	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AM440_RS10225	SM01321	AM440_RS10225
AM440_RS10355	SM00479	AM440_RS10355
AM440_RS10370	SM00849	Metallo-beta-lactamase superfamily
AM440_RS10375	SM00257	Lysin motif
AM440_RS10435	SM00382	ATPases associated with a variety of cellular activities
AM440_RS10435	SM00930	AM440_RS10435
AM440_RS10480	SM01322	AM440_RS10480
AM440_RS10495	SM00977	TilS substrate C-terminal domain
AM440_RS10515	SM00481	DNA polymerase alpha chain like domain
AM440_RS10545	SM00935	Outer membrane protein (OmpH-like)
AM440_RS10555	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM440_RS10610	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM440_RS10635	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM440_RS10645	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM440_RS10690	SM00382	ATPases associated with a variety of cellular activities
AM440_RS10705	SM00487	DEAD-like helicases superfamily
AM440_RS10705	SM00490	helicase superfamily c-terminal domain
AM440_RS10705	SM00847	Helicase associated domain (HA2)  Add an annotation
AM440_RS10820	SM00382	ATPases associated with a variety of cellular activities
AM440_RS10825	SM00947	Carbonic anhydrase
AM440_RS10835	SM00564	beta-propeller repeat
AM440_RS10900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS10900	SM00895	AM440_RS10900
AM440_RS10915	SM00644	AM440_RS10915
AM440_RS10945	SM01240	AM440_RS10945
AM440_RS10970	SM00957	SecA DEAD-like domain
AM440_RS10970	SM00958	SecA preprotein cross-linking domain
AM440_RS10985	SM00864	Tubulin/FtsZ family, GTPase domain
AM440_RS10985	SM00865	Tubulin/FtsZ family, C-terminal domain
AM440_RS10990	SM00842	Cell division protein FtsA
AM440_RS11065	SM00354	helix_turn _helix lactose operon repressor
AM440_RS11095	SM00917	LeuA allosteric (dimerisation) domain
AM440_RS11100	SM01329	AM440_RS11100
AM440_RS11140	SM00382	ATPases associated with a variety of cellular activities
AM440_RS11150	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS11170	SM01007	Class II Aldolase and Adducin N-terminal domain
AM440_RS11175	SM00486	DNA polymerase type-B family
AM440_RS11180	SM00487	DEAD-like helicases superfamily
AM440_RS11180	SM00490	helicase superfamily c-terminal domain
AM440_RS11190	SM00271	DnaJ molecular chaperone homology domain
AM440_RS11210	SM00650	Ribosomal RNA adenine dimethylases
AM440_RS11255	SM00893	Electron transfer flavoprotein domain
AM440_RS11260	SM00893	Electron transfer flavoprotein domain
AM440_RS11305	SM00851	MGS-like domain
AM440_RS11305	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AM440_RS11310	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AM440_RS11345	SM00904	Riboflavin kinase
AM440_RS11395	SM00271	DnaJ molecular chaperone homology domain
AM440_RS11420	SM00852	Probable molybdopterin binding domain
AM440_RS11475	SM00448	cheY-homologous receiver domain
AM440_RS11475	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS11485	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS11485	SM00387	Histidine kinase-like ATPases
AM440_RS11485	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS11490	SM00448	cheY-homologous receiver domain
AM440_RS11490	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS11500	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS11500	SM00871	Bacterial transcription activator, effector binding domain
AM440_RS11505	SM00855	Phosphoglycerate mutase family
AM440_RS11530	SM00382	ATPases associated with a variety of cellular activities
AM440_RS11535	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS11540	SM00382	ATPases associated with a variety of cellular activities
AM440_RS11570	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
AM440_RS11575	SM01133	AM440_RS11575
AM440_RS11605	SM00749	bacterial OsmY and nodulation domain
AM440_RS11660	SM00421	helix_turn_helix, Lux Regulon
AM440_RS11665	SM00421	helix_turn_helix, Lux Regulon
AM440_RS11685	SM00382	ATPases associated with a variety of cellular activities
AM440_RS11700	SM00829	Enoylreductase
AM440_RS11705	SM00895	AM440_RS11705
AM440_RS11715	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM440_RS11715	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS11715	SM00319	Homologues of the ligand binding domain of Tar
AM440_RS11735	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AM440_RS11835	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS11835	SM00895	AM440_RS11835
AM440_RS11950	SM00382	ATPases associated with a variety of cellular activities
AM440_RS12025	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS12025	SM01134	AM440_RS12025
AM440_RS12065	SM00354	helix_turn _helix lactose operon repressor
AM440_RS12110	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS12125	SM00857	Resolvase, N terminal domain
AM440_RS12155	SM00829	Enoylreductase
AM440_RS12235	SM00822	AM440_RS12235
AM440_RS12270	SM00831	Cation transporter/ATPase, N-terminus
AM440_RS12275	SM00354	helix_turn _helix lactose operon repressor
AM440_RS12285	SM00642	Alpha-amylase domain
AM440_RS12335	SM00382	ATPases associated with a variety of cellular activities
AM440_RS12355	SM00966	SpoVT / AbrB like domain 
AM440_RS12385	SM01091	Transporter associated domain
AM440_RS12470	SM00882	Coenzyme A transferase
AM440_RS12520	SM01007	Class II Aldolase and Adducin N-terminal domain
AM440_RS12530	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AM440_RS12555	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS12555	SM01134	AM440_RS12555
AM440_RS12615	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AM440_RS12620	SM00316	Ribosomal protein S1-like RNA-binding domain
AM440_RS12620	SM00357	Cold shock protein domain
AM440_RS12620	SM00955	AM440_RS12620
AM440_RS12630	SM00788	Adenylosuccinate synthetase
AM440_RS12640	SM00244	prohibitin homologues
AM440_RS12645	SM00244	prohibitin homologues
AM440_RS12665	SM00853	MutL C terminal dimerisation domain
AM440_RS12665	SM01340	AM440_RS12665
AM440_RS12670	SM00646	AM440_RS12670
AM440_RS12705	SM00479	AM440_RS12705
AM440_RS12790	SM00841	Elongation factor P, C-terminal
AM440_RS12790	SM01185	AM440_RS12790
AM440_RS12815	SM00883	Chaperonin 10 Kd subunit
AM440_RS12865	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS12915	SM00091	PAS domain
AM440_RS12915	SM00387	Histidine kinase-like ATPases
AM440_RS12920	SM00448	cheY-homologous receiver domain
AM440_RS12955	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS12965	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS12980	SM00448	cheY-homologous receiver domain
AM440_RS12980	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS12985	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS12985	SM00387	Histidine kinase-like ATPases
AM440_RS12985	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS13025	SM00382	ATPases associated with a variety of cellular activities
AM440_RS13040	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS13040	SM00866	AM440_RS13040
AM440_RS13065	SM00382	ATPases associated with a variety of cellular activities
AM440_RS13070	SM00382	ATPases associated with a variety of cellular activities
AM440_RS13080	SM00072	Guanylate kinase homologues.
AM440_RS13120	SM00382	ATPases associated with a variety of cellular activities
AM440_RS13140	SM00849	Metallo-beta-lactamase superfamily
AM440_RS13170	SM00671	Sel1-like repeats.
AM440_RS13185	SM00028	Tetratricopeptide repeats
AM440_RS13270	SM00422	helix_turn_helix, mercury resistance
AM440_RS13275	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS13280	SM00052	Putative diguanylate phosphodiesterase
AM440_RS13335	SM01005	Alanine racemase, C-terminal domain
AM440_RS13340	SM00382	ATPases associated with a variety of cellular activities
AM440_RS13345	SM00829	Enoylreductase
AM440_RS13395	SM00563	Phosphate acyltransferases
AM440_RS13435	SM00382	ATPases associated with a variety of cellular activities
AM440_RS13525	SM00363	S4 RNA-binding domain
AM440_RS13540	SM01018	B12 binding domain
AM440_RS13545	SM00346	helix_turn_helix isocitrate lyase regulation
AM440_RS13605	SM00798	AICARFT/IMPCHase bienzyme
AM440_RS13605	SM00851	MGS-like domain
AM440_RS13610	SM01209	AM440_RS13610
AM440_RS13610	SM01210	AM440_RS13610
AM440_RS13615	SM00382	ATPases associated with a variety of cellular activities
AM440_RS13615	SM00448	cheY-homologous receiver domain
AM440_RS13620	SM00387	Histidine kinase-like ATPases
AM440_RS13620	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS13640	SM00411	bacterial (prokaryotic) histone like domain
AM440_RS13695	SM00876	Biotin and Thiamin Synthesis associated domain
AM440_RS13705	SM00663	RNA polymerase I subunit A N-terminus
AM440_RS13735	SM00649	Ribosomal protein L11/L12
AM440_RS13740	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AM440_RS13740	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AM440_RS13875	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM440_RS13895	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS13995	SM00487	DEAD-like helicases superfamily
AM440_RS13995	SM00490	helicase superfamily c-terminal domain
AM440_RS14000	SM00354	helix_turn _helix lactose operon repressor
AM440_RS14015	SM00382	ATPases associated with a variety of cellular activities
AM440_RS14015	SM01086	C-terminal, D2-small domain, of ClpB protein
AM440_RS14110	SM00448	cheY-homologous receiver domain
AM440_RS14110	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS14115	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS14115	SM00387	Histidine kinase-like ATPases
AM440_RS14115	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS14145	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS14150	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS14165	SM01007	Class II Aldolase and Adducin N-terminal domain
AM440_RS14210	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM440_RS14265	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS14265	SM01134	AM440_RS14265
AM440_RS14280	SM01133	AM440_RS14280
AM440_RS14345	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS14345	SM00866	AM440_RS14345
AM440_RS14360	SM01230	AM440_RS14360
AM440_RS14365	SM00091	PAS domain
AM440_RS14365	SM00387	Histidine kinase-like ATPases
AM440_RS14365	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS14370	SM00382	ATPases associated with a variety of cellular activities
AM440_RS14370	SM00448	cheY-homologous receiver domain
AM440_RS14380	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM440_RS14395	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AM440_RS14395	SM00474	3'-5' exonuclease
AM440_RS14395	SM00475	5'-3' exonuclease
AM440_RS14395	SM00482	DNA polymerase A domain
AM440_RS14405	SM00563	Phosphate acyltransferases
AM440_RS14505	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AM440_RS14595	SM00341	Helicase and RNase D C-terminal
AM440_RS14595	SM00487	DEAD-like helicases superfamily
AM440_RS14595	SM00490	helicase superfamily c-terminal domain
AM440_RS14595	SM00956	AM440_RS14595
AM440_RS14665	SM01219	AM440_RS14665
AM440_RS14765	SM00984	UDP binding domain
AM440_RS14790	SM00357	Cold shock protein domain
AM440_RS14790	SM00382	ATPases associated with a variety of cellular activities
AM440_RS14790	SM00959	Rho termination factor, N-terminal domain
AM440_RS14805	SM00487	DEAD-like helicases superfamily
AM440_RS14805	SM00490	helicase superfamily c-terminal domain
AM440_RS14880	SM00382	ATPases associated with a variety of cellular activities
AM440_RS14925	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS14925	SM00895	AM440_RS14925
AM440_RS14935	SM00354	helix_turn _helix lactose operon repressor
AM440_RS14955	SM00382	ATPases associated with a variety of cellular activities
AM440_RS14970	SM00382	ATPases associated with a variety of cellular activities
AM440_RS14975	SM00327	von Willebrand factor (vWF) type A domain
AM440_RS14985	SM00344	helix_turn_helix ASNC type
AM440_RS14995	SM01228	AM440_RS14995
AM440_RS15040	SM00382	ATPases associated with a variety of cellular activities
AM440_RS15080	SM00382	ATPases associated with a variety of cellular activities
AM440_RS15090	SM01061	CAT RNA binding domain
AM440_RS15185	SM01234	AM440_RS15185
AM440_RS15205	SM00382	ATPases associated with a variety of cellular activities
AM440_RS15205	SM00760	Bacterial dnaA protein helix-turn-helix domain
AM440_RS15210	SM00480	DNA polymerase III beta subunit
AM440_RS15220	SM00387	Histidine kinase-like ATPases
AM440_RS15220	SM00433	TopoisomeraseII
AM440_RS15240	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS15240	SM00895	AM440_RS15240
AM440_RS15255	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM440_RS15310	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS15390	SM00421	helix_turn_helix, Lux Regulon
AM440_RS15390	SM00448	cheY-homologous receiver domain
AM440_RS15395	SM00387	Histidine kinase-like ATPases
AM440_RS15595	SM00487	DEAD-like helicases superfamily
AM440_RS15595	SM00490	helicase superfamily c-terminal domain
AM440_RS15605	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM440_RS15605	SM00954	Region found in RelA / SpoT proteins
AM440_RS15610	SM01409	AM440_RS15610
AM440_RS15615	SM00072	Guanylate kinase homologues.
AM440_RS15620	SM00532	Ligase N family
AM440_RS15690	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AM440_RS15690	SM01232	AM440_RS15690
AM440_RS15770	SM00829	Enoylreductase
AM440_RS15800	SM00450	Rhodanese Homology Domain
AM440_RS15820	SM00971	Serine acetyltransferase, N-terminal
AM440_RS15835	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS15835	SM00895	AM440_RS15835
AM440_RS16000	SM01007	Class II Aldolase and Adducin N-terminal domain
AM440_RS16010	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AM440_RS16045	SM00346	helix_turn_helix isocitrate lyase regulation
AM440_RS16060	SM00642	Alpha-amylase domain
AM440_RS16065	SM00047	Lysozyme subfamily 2
AM440_RS16070	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS16080	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16140	SM00357	Cold shock protein domain
AM440_RS16145	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS16235	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16240	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16340	SM00028	Tetratricopeptide repeats
AM440_RS16345	SM00052	Putative diguanylate phosphodiesterase
AM440_RS16345	SM00267	diguanylate cyclase
AM440_RS16380	SM00052	Putative diguanylate phosphodiesterase
AM440_RS16405	SM00421	helix_turn_helix, Lux Regulon
AM440_RS16415	SM01235	AM440_RS16415
AM440_RS16425	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS16430	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS16480	SM00421	helix_turn_helix, Lux Regulon
AM440_RS16510	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AM440_RS16600	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16635	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16640	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16715	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16715	SM00962	SRP54-type protein, GTPase domain
AM440_RS16715	SM00963	SRP54-type protein, helical bundle domain
AM440_RS16720	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16765	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16770	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16790	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16850	SM00354	helix_turn _helix lactose operon repressor
AM440_RS16870	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM440_RS16875	SM00642	Alpha-amylase domain
AM440_RS16880	SM00642	Alpha-amylase domain
AM440_RS16925	SM00450	Rhodanese Homology Domain
AM440_RS16935	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS16935	SM01134	AM440_RS16935
AM440_RS16940	SM00382	ATPases associated with a variety of cellular activities
AM440_RS16955	SM00421	helix_turn_helix, Lux Regulon
AM440_RS17010	SM00899	AM440_RS17010
AM440_RS17020	SM00316	Ribosomal protein S1-like RNA-binding domain
AM440_RS17020	SM00732	Likely ribonuclease with RNase H fold.
AM440_RS17035	SM00448	cheY-homologous receiver domain
AM440_RS17035	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS17040	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS17040	SM00387	Histidine kinase-like ATPases
AM440_RS17040	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS17065	SM00363	S4 RNA-binding domain
AM440_RS17110	SM00965	Secretin and TonB N terminus short domain
AM440_RS17195	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS17195	SM00866	AM440_RS17195
AM440_RS17285	SM00100	Cyclic nucleotide-monophosphate binding domain
AM440_RS17285	SM00419	helix_turn_helix, cAMP Regulatory protein
AM440_RS17315	SM00382	ATPases associated with a variety of cellular activities
AM440_RS17385	SM00838	Elongation factor G C-terminus
AM440_RS17385	SM00889	Elongation factor G, domain IV
AM440_RS17395	SM00495	Chitin-binding domain type 3
AM440_RS17455	SM00382	ATPases associated with a variety of cellular activities
AM440_RS17480	SM01403	AM440_RS17480
AM440_RS17500	SM01382	AM440_RS17500
AM440_RS17500	SM01383	AM440_RS17500
AM440_RS17515	SM00322	K homology RNA-binding domain
AM440_RS17535	SM01374	AM440_RS17535
AM440_RS17540	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AM440_RS17605	SM00363	S4 RNA-binding domain
AM440_RS17605	SM01390	AM440_RS17605
AM440_RS17610	SM00662	RNA polymerases D
AM440_RS17625	SM00422	helix_turn_helix, mercury resistance
AM440_RS17730	SM00382	ATPases associated with a variety of cellular activities
AM440_RS17745	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS17815	SM00878	Biotin carboxylase C-terminal domain
AM440_RS17830	SM00829	Enoylreductase
AM440_RS17835	SM00052	Putative diguanylate phosphodiesterase
AM440_RS17835	SM00267	diguanylate cyclase
AM440_RS17870	SM00316	Ribosomal protein S1-like RNA-binding domain
AM440_RS17925	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM440_RS17930	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AM440_RS17980	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS17980	SM00895	AM440_RS17980
AM440_RS17985	SM01130	AM440_RS17985
AM440_RS18040	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM440_RS18045	SM00073	Histidine Phosphotransfer domain
AM440_RS18045	SM00091	PAS domain
AM440_RS18045	SM00387	Histidine kinase-like ATPases
AM440_RS18045	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS18045	SM00448	cheY-homologous receiver domain
AM440_RS18090	SM00382	ATPases associated with a variety of cellular activities
AM440_RS18120	SM00382	ATPases associated with a variety of cellular activities
AM440_RS18195	SM01103	AM440_RS18195
AM440_RS18205	SM00382	ATPases associated with a variety of cellular activities
AM440_RS18255	SM00316	Ribosomal protein S1-like RNA-binding domain
AM440_RS18275	SM01387	AM440_RS18275
AM440_RS18280	SM00316	Ribosomal protein S1-like RNA-binding domain
AM440_RS18280	SM00322	K homology RNA-binding domain
AM440_RS18285	SM00028	Tetratricopeptide repeats
AM440_RS18295	SM00487	DEAD-like helicases superfamily
AM440_RS18295	SM00490	helicase superfamily c-terminal domain
AM440_RS18330	SM00465	GIY-YIG type nucleases (URI domain)
AM440_RS18355	SM00749	bacterial OsmY and nodulation domain
AM440_RS18465	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS18465	SM01134	AM440_RS18465
AM440_RS18480	SM00858	AM440_RS18480
AM440_RS18645	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS18645	SM00895	AM440_RS18645
AM440_RS18675	SM00858	AM440_RS18675
AM440_RS18725	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS18755	SM01038	Beta galactosidase small chain
AM440_RS18760	SM00354	helix_turn _helix lactose operon repressor
AM440_RS18785	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AM440_RS18785	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AM440_RS18825	SM00400	zinc finger
AM440_RS18825	SM00493	AM440_RS18825
AM440_RS18825	SM00766	DNA primase DnaG DnaB-binding
AM440_RS18870	SM01207	AM440_RS18870
AM440_RS18875	SM00905	Dihydroneopterin aldolase
AM440_RS18890	SM00287	Bacterial SH3 domain homologues
AM440_RS18900	SM01118	AM440_RS18900
AM440_RS18915	SM00244	prohibitin homologues
AM440_RS19020	SM00387	Histidine kinase-like ATPases
AM440_RS19020	SM00433	TopoisomeraseII
AM440_RS19040	SM00387	Histidine kinase-like ATPases
AM440_RS19040	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS19045	SM00448	cheY-homologous receiver domain
AM440_RS19045	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS19055	SM00871	Bacterial transcription activator, effector binding domain
AM440_RS19065	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS19075	SM00434	DNA Topoisomerase IV
AM440_RS19080	SM00563	Phosphate acyltransferases
AM440_RS19090	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM440_RS19115	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS19305	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS19305	SM00895	AM440_RS19305
AM440_RS19445	SM00478	endonuclease III
AM440_RS19445	SM00525	AM440_RS19445
AM440_RS19470	SM00870	AM440_RS19470
AM440_RS19480	SM00729	Elongator protein 3, MiaB family, Radical SAM
AM440_RS19490	SM01152	AM440_RS19490
AM440_RS19505	SM00382	ATPases associated with a variety of cellular activities
AM440_RS19510	SM00732	Likely ribonuclease with RNase H fold.
AM440_RS19535	SM00731	SprT homologues.
AM440_RS19580	SM00861	Transketolase, pyrimidine binding domain
AM440_RS19620	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AM440_RS19730	SM01011	Aminopeptidase P, N-terminal domain
AM440_RS19765	SM01022	AM440_RS19765
AM440_RS19865	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AM440_RS19870	SM01092	CO dehydrogenase flavoprotein C-terminal domain
AM440_RS19925	SM00091	PAS domain
AM440_RS19925	SM00382	ATPases associated with a variety of cellular activities
AM440_RS19935	SM01092	CO dehydrogenase flavoprotein C-terminal domain
AM440_RS19940	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AM440_RS19950	SM00257	Lysin motif
AM440_RS20005	SM00421	helix_turn_helix, Lux Regulon
AM440_RS20040	SM00421	helix_turn_helix, Lux Regulon
AM440_RS20055	SM00028	Tetratricopeptide repeats
AM440_RS20110	SM00862	Transcriptional regulatory protein, C terminal
AM440_RS20160	SM00354	helix_turn _helix lactose operon repressor
AM440_RS20165	SM00563	Phosphate acyltransferases
AM440_RS20190	SM00927	DNA mismatch repair enzyme MutH
AM440_RS20200	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM440_RS20250	SM00382	ATPases associated with a variety of cellular activities
AM440_RS20260	SM00646	AM440_RS20260
AM440_RS20285	SM00925	MltA specific insert domain
AM440_RS20325	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS20325	SM01134	AM440_RS20325
AM440_RS20350	SM01007	Class II Aldolase and Adducin N-terminal domain
AM440_RS20360	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AM440_RS20360	SM00475	5'-3' exonuclease
AM440_RS20410	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM440_RS20415	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM440_RS20420	SM00073	Histidine Phosphotransfer domain
AM440_RS20420	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS20420	SM00387	Histidine kinase-like ATPases
AM440_RS20420	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS20420	SM00448	cheY-homologous receiver domain
AM440_RS20430	SM00954	Region found in RelA / SpoT proteins
AM440_RS20435	SM00966	SpoVT / AbrB like domain 
AM440_RS20455	SM01192	AM440_RS20455
AM440_RS20455	SM01193	AM440_RS20455
AM440_RS20515	SM00893	Electron transfer flavoprotein domain
AM440_RS20560	SM00487	DEAD-like helicases superfamily
AM440_RS20560	SM00490	helicase superfamily c-terminal domain
AM440_RS20585	SM01101	AM440_RS20585
AM440_RS20655	SM00257	Lysin motif
AM440_RS20675	SM01007	Class II Aldolase and Adducin N-terminal domain
AM440_RS20690	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS20690	SM01134	AM440_RS20690
AM440_RS20700	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AM440_RS20700	SM00534	ATPase domain of DNA mismatch repair MUTS family
AM440_RS20715	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM440_RS20715	SM00382	ATPases associated with a variety of cellular activities
AM440_RS20805	SM00354	helix_turn _helix lactose operon repressor
AM440_RS20825	SM00849	Metallo-beta-lactamase superfamily
AM440_RS20830	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM440_RS20830	SM00382	ATPases associated with a variety of cellular activities
AM440_RS20840	SM00420	helix_turn_helix, Deoxyribose operon repressor
AM440_RS20840	SM01134	AM440_RS20840
AM440_RS20880	SM00382	ATPases associated with a variety of cellular activities
AM440_RS20890	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AM440_RS20955	SM00347	helix_turn_helix multiple antibiotic resistance protein
AM440_RS20985	SM00382	ATPases associated with a variety of cellular activities
AM440_RS21030	SM00528	Domain in histone-like proteins of HNS family
AM440_RS21035	SM00450	Rhodanese Homology Domain
AM440_RS21040	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AM440_RS21050	SM00257	Lysin motif
AM440_RS21050	SM00749	bacterial OsmY and nodulation domain
AM440_RS21055	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AM440_RS21055	SM00895	AM440_RS21055
AM440_RS21145	SM00869	Autotransporter beta-domain
AM440_RS21195	SM01091	Transporter associated domain
AM440_RS21205	SM00382	ATPases associated with a variety of cellular activities
AM440_RS21205	SM00962	SRP54-type protein, GTPase domain
AM440_RS21205	SM00963	SRP54-type protein, helical bundle domain
AM440_RS21235	SM00267	diguanylate cyclase
AM440_RS21260	SM00830	Chorismate mutase type II
AM440_RS21265	SM00830	Chorismate mutase type II
AM440_RS21285	SM00363	S4 RNA-binding domain
AM440_RS21295	SM00382	ATPases associated with a variety of cellular activities
AM440_RS21295	SM01086	C-terminal, D2-small domain, of ClpB protein
AM440_RS21335	SM00155	Phospholipase D. Active site motifs.
AM440_RS21340	SM00881	CoA binding domain
AM440_RS21345	SM01144	AM440_RS21345
AM440_RS21360	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AM440_RS21365	SM00986	Uracil DNA glycosylase superfamily
AM440_RS21365	SM00987	UreE urease accessory protein, C-terminal domain 
AM440_RS21385	SM00487	DEAD-like helicases superfamily
AM440_RS21385	SM00490	helicase superfamily c-terminal domain
AM440_RS21435	SM00358	Double-stranded RNA binding motif
AM440_RS21435	SM00535	Ribonuclease III family
AM440_RS21495	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS21505	SM01211	AM440_RS21505
AM440_RS21510	SM00387	Histidine kinase-like ATPases
AM440_RS21510	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS21520	SM00382	ATPases associated with a variety of cellular activities
AM440_RS21520	SM00448	cheY-homologous receiver domain
AM440_RS21525	SM00938	Nitrogen regulatory protein P-II
AM440_RS21545	SM00028	Tetratricopeptide repeats
AM440_RS21560	SM00382	ATPases associated with a variety of cellular activities
AM440_RS21570	SM00829	Enoylreductase
AM440_RS21660	SM00271	DnaJ molecular chaperone homology domain
AM440_RS21690	SM00450	Rhodanese Homology Domain
AM440_RS21695	SM01359	AM440_RS21695
AM440_RS21695	SM01360	AM440_RS21695
AM440_RS21705	SM00562	AM440_RS21705
AM440_RS21715	SM00530	Helix-turn-helix XRE-family like proteins 
AM440_RS21735	SM00564	beta-propeller repeat
AM440_RS21755	SM00116	Domain in cystathionine beta-synthase and other proteins.
AM440_RS21755	SM01240	AM440_RS21755
AM440_RS21790	SM00052	Putative diguanylate phosphodiesterase
AM440_RS21790	SM00267	diguanylate cyclase
AM440_RS21855	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AM440_RS21855	SM00382	ATPases associated with a variety of cellular activities
AM440_RS21930	SM01130	AM440_RS21930
AM440_RS21985	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AM440_RS21985	SM00387	Histidine kinase-like ATPases
AM440_RS22005	SM00861	Transketolase, pyrimidine binding domain
AM440_RS22020	SM00919	Malic enzyme, NAD binding domain
AM440_RS22020	SM01274	AM440_RS22020
AM440_RS22025	SM00877	AM440_RS22025
AM440_RS22050	SM00877	AM440_RS22050
AM440_RS22155	SM00877	AM440_RS22155
AM440_RS22160	SM00877	AM440_RS22160
AM440_RS22165	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS22175	SM00646	AM440_RS22175
AM440_RS22220	SM00822	AM440_RS22220
AM440_RS22240	SM00382	ATPases associated with a variety of cellular activities
AM440_RS22255	SM00773	Proposed nucleic acid binding domain
AM440_RS22295	SM00771	ZipA, C-terminal domain (FtsZ-binding)
AM440_RS22300	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AM440_RS22300	SM00292	breast cancer carboxy-terminal domain
AM440_RS22300	SM00532	Ligase N family
AM440_RS22445	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS22450	SM00448	cheY-homologous receiver domain
AM440_RS22450	SM00850	LytTr DNA-binding domain
AM440_RS22455	SM00387	Histidine kinase-like ATPases
AM440_RS22510	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS22510	SM00073	Histidine Phosphotransfer domain
AM440_RS22510	SM00387	Histidine kinase-like ATPases
AM440_RS22510	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS22510	SM00448	cheY-homologous receiver domain
AM440_RS22515	SM00421	helix_turn_helix, Lux Regulon
AM440_RS22515	SM00448	cheY-homologous receiver domain
AM440_RS22565	SM00382	ATPases associated with a variety of cellular activities
AM440_RS22590	SM00869	Autotransporter beta-domain
AM440_RS22725	SM00463	Small MutS-related domain
AM440_RS22765	SM00825	Beta-ketoacyl synthase
AM440_RS22790	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AM440_RS22835	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS22840	SM00062	Bacterial periplasmic substrate-binding proteins
AM440_RS22855	SM00382	ATPases associated with a variety of cellular activities
AM440_RS22870	SM00905	Dihydroneopterin aldolase
AM440_RS22930	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AM440_RS22970	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AM440_RS22975	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM440_RS22975	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AM440_RS23040	SM00327	von Willebrand factor (vWF) type A domain
AM440_RS23085	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM440_RS23150	SM00852	Probable molybdopterin binding domain
AM440_RS23155	SM00346	helix_turn_helix isocitrate lyase regulation
AM440_RS23160	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AM440_RS23240	SM00869	Autotransporter beta-domain
AM440_RS23250	SM00434	DNA Topoisomerase IV
AM440_RS23290	SM00882	Coenzyme A transferase
AM440_RS23295	SM00882	Coenzyme A transferase
AM440_RS23300	SM00382	ATPases associated with a variety of cellular activities
AM440_RS23300	SM00448	cheY-homologous receiver domain
AM440_RS23310	SM00387	Histidine kinase-like ATPases
AM440_RS23310	SM00388	His Kinase A (phosphoacceptor) domain
AM440_RS23310	SM00448	cheY-homologous receiver domain
AM440_RS23315	SM00421	helix_turn_helix, Lux Regulon
AM440_RS23315	SM00448	cheY-homologous receiver domain
AM440_RS23320	SM00387	Histidine kinase-like ATPases
AM440_RS23340	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS23350	SM00382	ATPases associated with a variety of cellular activities
AM440_RS23380	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM440_RS23405	SM00382	ATPases associated with a variety of cellular activities
AM440_RS23445	SM00421	helix_turn_helix, Lux Regulon
AM440_RS23445	SM00448	cheY-homologous receiver domain
AM440_RS23455	SM00869	Autotransporter beta-domain
AM440_RS23485	SM00487	DEAD-like helicases superfamily
AM440_RS23485	SM00490	helicase superfamily c-terminal domain
AM440_RS23495	SM00363	S4 RNA-binding domain
AM440_RS23515	SM00382	ATPases associated with a variety of cellular activities
AM440_RS23535	SM00052	Putative diguanylate phosphodiesterase
AM440_RS23650	SM00857	Resolvase, N terminal domain
AM440_RS23665	SM00945	ProQ/FINO family
AM440_RS23695	SM00155	Phospholipase D. Active site motifs.
AM440_RS23720	SM00857	Resolvase, N terminal domain
AM440_RS23800	SM00382	ATPases associated with a variety of cellular activities
AM440_RS23840	SM00155	Phospholipase D. Active site motifs.
AM440_RS23910	SM00528	Domain in histone-like proteins of HNS family
AM440_RS24000	SM00857	Resolvase, N terminal domain
AM440_RS24210	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AM440_RS24235	SM01321	AM440_RS24235
AM440_RS24250	SM00342	helix_turn_helix, arabinose operon control protein
AM440_RS24260	SM00857	Resolvase, N terminal domain
AM440_RS24330	SM00857	Resolvase, N terminal domain
AM440_RS24380	SM00052	Putative diguanylate phosphodiesterase
AM440_RS24390	SM00422	helix_turn_helix, mercury resistance
AM440_RS24415	SM00422	helix_turn_helix, mercury resistance
