locus-tag	class	description
C3029_RS00040	COG0814	amino acid
C3029_RS00055	COG2091	lysine biosynthetic process via aminoadipic acid
C3029_RS00060	COG0431	NADPH-dependent FMN reductase
C3029_RS00065	COG2252	PERMEase
C3029_RS00070	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3029_RS00080	COG3196	Protein conserved in bacteria
C3029_RS00085	COG0363	glucosamine-6-phosphate deaminase activity
C3029_RS00090	COG2382	esterase
C3029_RS00100	COG2723	6-phospho-beta-galactosidase activity
C3029_RS00105	COG1263	PTS System
C3029_RS00105	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS00105	COG2190	(PTS) system
C3029_RS00110	COG3711	transcriptional antiterminator
C3029_RS00115	COG0704	Plays a role in the regulation of phosphate uptake
C3029_RS00120	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
C3029_RS00125	COG0581	inorganic phosphate transmembrane transporter activity
C3029_RS00130	COG0573	inorganic phosphate transmembrane transporter activity
C3029_RS00135	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
C3029_RS00140	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
C3029_RS00190	COG3312	ion transport
C3029_RS00205	COG0716	FMN binding
C3029_RS00210	COG1522	sequence-specific DNA binding
C3029_RS00240	COG2801	Transposase and inactivated derivatives
C3029_RS00245	COG2963	transposase activity
C3029_RS00255	COG1129	ABC transporter
C3029_RS00260	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3029_RS00265	COG1879	ABC-type sugar transport system periplasmic component
C3029_RS00270	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3029_RS00275	COG1609	Transcriptional regulator
C3029_RS00280	COG0477	Major facilitator Superfamily
C3029_RS00285	COG2186	Transcriptional regulator
C3029_RS00325	COG3085	chromosome segregation
C3029_RS00330	COG0606	chelatase, subunit chli
C3029_RS00345	COG3978	acetolactate synthase activity
C3029_RS00350	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3029_RS00360	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C3029_RS00365	COG0583	DNA-binding transcription factor activity
C3029_RS00375	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C3029_RS00385	COG0210	DNA helicase
C3029_RS00400	COG3118	belongs to the thioredoxin family
C3029_RS00410	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
C3029_RS00420	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
C3029_RS00425	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
C3029_RS00430	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
C3029_RS00435	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
C3029_RS00440	COG1088	dTDP-glucose 4,6-dehydratase activity
C3029_RS00445	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
C3029_RS00450	COG0456	acetyltransferase
C3029_RS00455	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
C3029_RS00460	COG2244	polysaccharide biosynthetic process
C3029_RS00480	COG1113	amino acid transport
C3029_RS00505	COG0641	radical SAM
C3029_RS00510	COG3119	arylsulfatase activity
C3029_RS00515	COG3071	HemY protein
C3029_RS00520	COG2959	enzyme of heme biosynthesis
C3029_RS00525	COG1587	Uroporphyrinogen-III synthase
C3029_RS00535	COG3072	Adenylate cyclase
C3029_RS00545	COG5567	small periplasmic lipoprotein
C3029_RS00555	COG3159	Protein conserved in bacteria
C3029_RS00565	COG1011	Hydrolase
C3029_RS00570	COG0210	DNA helicase
C3029_RS00575	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
C3029_RS00580	COG3698	Phosphodiester glycosidase
C3029_RS00590	COG0598	Magnesium transport protein CorA
C3029_RS00620	COG2962	Rard protein
C3029_RS00625	COG2050	protein possibly involved in aromatic compounds catabolism
C3029_RS00630	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
C3029_RS00635	COG0514	ATP-dependent DNA helicase (RecQ)
C3029_RS00640	COG1280	lysine exporter protein (LysE YggA)
C3029_RS00645	COG1280	lysine exporter protein (LysE YggA)
C3029_RS00650	COG2267	carboxylic ester hydrolase activity
C3029_RS00655	COG0561	phosphatase activity
C3029_RS00660	COG0697	spore germination
C3029_RS00665	COG0583	DNA-binding transcription factor activity
C3029_RS00670	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
C3029_RS00675	COG0583	DNA-binding transcription factor activity
C3029_RS00680	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
C3029_RS00690	COG0549	Belongs to the carbamate kinase family
C3029_RS00695	COG1304	FMN binding
C3029_RS00700	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3029_RS00710	COG1335	isochorismatase
C3029_RS00720	COG0412	Dienelactone hydrolase
C3029_RS00725	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
C3029_RS00745	COG0800	Aldolase
C3029_RS00750	COG3734	2-keto-3-deoxy-galactonokinase
C3029_RS00755	COG1414	Transcriptional regulator
C3029_RS00760	COG1322	Protein conserved in bacteria
C3029_RS00770	COG3165	ubiquinone biosynthetic process from chorismate
C3029_RS00780	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
C3029_RS00785	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
C3029_RS00790	COG0805	protein transport
C3029_RS00795	COG0084	hydrolase, TatD family'
C3029_RS00800	COG0250	Participates in transcription elongation, termination and antitermination
C3029_RS00805	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
C3029_RS00810	COG0543	2 iron, 2 sulfur cluster binding
C3029_RS00830	COG1739	Uncharacterized protein family UPF0029
C3029_RS00835	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3029_RS00840	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
C3029_RS00870	COG1763	Mo-molybdopterin cofactor biosynthetic process
C3029_RS00875	COG0746	molybdenum cofactor guanylyltransferase activity
C3029_RS00880	COG3084	Protein conserved in bacteria
C3029_RS00885	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
C3029_RS00890	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3029_RS00895	COG5339	Protein conserved in bacteria
C3029_RS00900	COG0204	Acyl-transferase
C3029_RS00910	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3029_RS00910	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3029_RS00925	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C3029_RS00935	COG2204	response regulator
C3029_RS00940	COG3852	Histidine kinase
C3029_RS00945	COG0174	glutamine synthetase
C3029_RS00955	COG1217	gtp-binding protein TYPA
C3029_RS00960	COG2188	Transcriptional regulator
C3029_RS00965	COG1082	Xylose isomerase domain protein TIM barrel
C3029_RS00970	COG2271	Major facilitator Superfamily
C3029_RS00975	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
C3029_RS00980	COG2211	Major facilitator Superfamily
C3029_RS00985	COG2211	Major facilitator Superfamily
C3029_RS00990	COG1501	Belongs to the glycosyl hydrolase 31 family
C3029_RS00995	COG2017	converts alpha-aldose to the beta-anomer
C3029_RS01000	COG2942	2-epimerase
C3029_RS01005	COG3684	Belongs to the aldolase LacD family
C3029_RS01010	COG2084	Dehydrogenase
C3029_RS01015	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3029_RS01020	COG1349	DNA-binding transcription factor activity
C3029_RS01025	COG1011	Hydrolase
C3029_RS01040	COG0456	acetyltransferase
C3029_RS01045	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
C3029_RS01050	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
C3029_RS01065	COG2864	formate dehydrogenase
C3029_RS01070	COG0437	4 iron, 4 sulfur cluster binding
C3029_RS01075	COG3383	formate dehydrogenase (NAD+) activity
C3029_RS01075	COG0243	molybdopterin cofactor binding
C3029_RS01080	COG3383	formate dehydrogenase (NAD+) activity
C3029_RS01080	COG0243	molybdopterin cofactor binding
C3029_RS01095	COG3711	transcriptional antiterminator
C3029_RS01095	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS01100	COG1363	Peptidase, m42
C3029_RS01105	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS01105	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS01110	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS01160	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
C3029_RS01175	COG2258	MOSC domain
C3029_RS01180	COG2205	protein histidine kinase activity
C3029_RS01185	COG0745	RESPONSE REGULATOR receiver
C3029_RS01190	COG3678	ATP-independent chaperone mediated protein folding
C3029_RS01205	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
C3029_RS01225	COG3152	Membrane
C3029_RS01230	COG3691	Protein conserved in bacteria
C3029_RS01235	COG0589	response to stress
C3029_RS01245	COG1494	fructose-1,6-bisphosphatase
C3029_RS01255	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
C3029_RS01270	COG1575	Belongs to the MenA family. Type 1 subfamily
C3029_RS01285	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
C3029_RS01290	COG1609	Transcriptional regulator
C3029_RS01295	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
C3029_RS01310	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
C3029_RS01320	COG0626	cystathionine gamma-synthase activity
C3029_RS01325	COG0527	aspartate kinase activity
C3029_RS01325	COG0460	homoserine dehydrogenase
C3029_RS01335	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
C3029_RS01345	COG0697	spore germination
C3029_RS01350	COG3738	Protein conserved in bacteria
C3029_RS01360	COG0371	Dehydrogenase
C3029_RS01365	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
C3029_RS01370	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS01370	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
C3029_RS01370	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS01375	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS01380	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS01385	COG1882	Formate acetyltransferase
C3029_RS01390	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
C3029_RS01395	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS01400	COG2207	Transcriptional regulator
C3029_RS01405	COG2194	sulfuric ester hydrolase activity
C3029_RS01420	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
C3029_RS01435	COG0583	DNA-binding transcription factor activity
C3029_RS01495	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
C3029_RS01495	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
C3029_RS01535	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C3029_RS01540	COG0250	Participates in transcription elongation, termination and antitermination
C3029_RS01580	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
C3029_RS01590	COG2104	thiamine diphosphate biosynthetic process
C3029_RS01595	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C3029_RS01630	COG3068	Protein conserved in bacteria
C3029_RS01645	COG3678	ATP-independent chaperone mediated protein folding
C3029_RS01650	COG4191	Histidine kinase
C3029_RS01655	COG2204	response regulator
C3029_RS01660	COG0151	Belongs to the GarS family
C3029_RS01695	COG0456	acetyltransferase
C3029_RS01705	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
C3029_RS01710	COG2224	Isocitrate lyase
C3029_RS01725	COG1414	Transcriptional regulator
C3029_RS01730	COG0646	methionine synthase
C3029_RS01730	COG1410	methionine synthase
C3029_RS01735	COG1283	sodium-dependent phosphate transmembrane transporter activity
C3029_RS01745	COG1187	pseudouridine synthase activity
C3029_RS01755	COG0527	aspartate kinase activity
C3029_RS01780	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3029_RS01800	COG2814	Major facilitator Superfamily
C3029_RS01800	COG0477	Major facilitator Superfamily
C3029_RS01805	COG3833	ABC-type maltose transport systems, permease component
C3029_RS01810	COG1175	transmembrane transport
C3029_RS01815	COG2182	Extracellular solute-binding protein
C3029_RS01825	COG3842	ATPase activity
C3029_RS01845	COG1357	PFAM Pentapeptide repeats (8 copies)
C3029_RS01865	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
C3029_RS01875	COG0534	Mate efflux family protein
C3029_RS01880	COG3237	CsbD-like
C3029_RS01885	COG0735	belongs to the Fur family
C3029_RS01900	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C3029_RS01910	COG0604	alcohol dehydrogenase
C3029_RS01915	COG0305	Participates in initiation and elongation during chromosome replication
C3029_RS01920	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3029_RS01925	COG1448	Aminotransferase
C3029_RS01935	COG3700	Belongs to the class B bacterial acid phosphatase family
C3029_RS01940	COG0432	Pfam Uncharacterised protein family UPF0047
C3029_RS01945	COG2315	Protein conserved in bacteria
C3029_RS01950	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
C3029_RS01955	COG0629	single-stranded DNA binding
C3029_RS01965	COG4943	cyclic-guanylate-specific phosphodiesterase activity
C3029_RS01970	COG2207	Transcriptional regulator
C3029_RS01975	COG0789	Transcriptional regulator
C3029_RS01980	COG2252	PERMEase
C3029_RS01985	COG0025	NhaP-type Na H and K H
C3029_RS02000	COG3162	membrane
C3029_RS02005	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3029_RS02015	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
C3029_RS02020	COG0437	4 iron, 4 sulfur cluster binding
C3029_RS02025	COG3301	Polysulphide reductase, NrfD
C3029_RS02030	COG1138	Cytochrome C-type biogenesis protein
C3029_RS02035	COG3088	subunit of a heme lyase
C3029_RS02040	COG4235	cytochrome complex assembly
C3029_RS02045	COG1301	dicarboxylic acid transport
C3029_RS02050	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
C3029_RS02055	COG3383	formate dehydrogenase (NAD+) activity
C3029_RS02060	COG3383	formate dehydrogenase (NAD+) activity
C3029_RS02065	COG1538	Outer membrane efflux protein
C3029_RS02070	COG1289	transmembrane transporter activity
C3029_RS02075	COG1566	PFAM secretion protein HlyD family protein
C3029_RS02085	COG2015	COG2015, Alkyl sulfatase and related hydrolases
C3029_RS02090	COG1940	carbohydrate kinase activity
C3029_RS02095	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C3029_RS02100	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3029_RS02105	COG1129	ABC transporter
C3029_RS02110	COG1879	ABC-type sugar transport system periplasmic component
C3029_RS02115	COG1737	Transcriptional regulator
C3029_RS02120	COG0698	ribose 5-phosphate isomerase
C3029_RS02130	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
C3029_RS02135	COG0456	acetyltransferase
C3029_RS02140	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
C3029_RS02145	COG3454	Phosphonate metabolism
C3029_RS02150	COG4778	phosphonate C-P lyase system protein PhnL
C3029_RS02155	COG4107	phosphonate C-P lyase system protein PhnK
C3029_RS02160	COG3627	carbon phosphorus lyase activity
C3029_RS02165	COG3626	phosphonate metabolism
C3029_RS02170	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
C3029_RS02175	COG3624	Phosphonate C-P lyase system protein PhnG
C3029_RS02180	COG2188	Transcriptional regulator
C3029_RS02185	COG3639	organic phosphonate transmembrane transporter activity
C3029_RS02190	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
C3029_RS02200	COG2764	glyoxalase bleomycin resistance protein dioxygenase
C3029_RS02205	COG2824	Alkylphosphonate utilization operon protein PhnA
C3029_RS02220	COG0477	Major facilitator Superfamily
C3029_RS02230	COG0642	Histidine kinase
C3029_RS02235	COG0745	RESPONSE REGULATOR receiver
C3029_RS02240	COG2194	sulfuric ester hydrolase activity
C3029_RS02245	COG0531	amino acid
C3029_RS02250	COG2207	Transcriptional regulator
C3029_RS02255	COG1982	Orn Lys Arg decarboxylase major
C3029_RS02260	COG2169	Transcriptional regulator
C3029_RS02270	COG1486	melibiose metabolic process
C3029_RS02275	COG2211	Major facilitator Superfamily
C3029_RS02280	COG3647	Membrane
C3029_RS02285	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
C3029_RS02285	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
C3029_RS02290	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
C3029_RS02300	COG4565	transcriptional regulatory protein
C3029_RS02310	COG3592	Divergent 4Fe-4S mono-cluster
C3029_RS02315	COG2388	GCN5-related N-acetyl-transferase
C3029_RS02335	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
C3029_RS02340	COG3104	oligopeptide transport
C3029_RS02345	COG1982	Orn Lys Arg decarboxylase major
C3029_RS02350	COG0531	amino acid
C3029_RS02355	COG3710	Transcriptional regulator
C3029_RS02365	COG1309	transcriptional regulator
C3029_RS02380	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
C3029_RS02385	COG1027	Aspartate ammonia-lyase
C3029_RS02390	COG3030	protein affecting phage T7 exclusion by the F plasmid
C3029_RS02395	COG0531	amino acid
C3029_RS02420	COG1509	lysine 2,3-aminomutase activity
C3029_RS02430	COG5510	response to toxic substance
C3029_RS02435	COG5510	response to toxic substance
C3029_RS02440	COG2076	Multidrug Resistance protein
C3029_RS02445	COG3040	lipid binding
C3029_RS02450	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
C3029_RS02465	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
C3029_RS02470	COG1053	succinate dehydrogenase
C3029_RS02480	COG0531	amino acid
C3029_RS02485	COG3264	Mechanosensitive ion channel
C3029_RS02485	COG1511	domain protein
C3029_RS02520	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
C3029_RS02525	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
C3029_RS02525	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
C3029_RS02530	COG0802	atpase or kinase
C3029_RS02535	COG0860	N-Acetylmuramoyl-L-alanine amidase
C3029_RS02555	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
C3029_RS02560	COG0330	HflC and HflK could
C3029_RS02565	COG0330	HflC and HflK could
C3029_RS02570	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
C3029_RS02585	COG0557	exoribonuclease II activity
C3029_RS02590	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3029_RS02595	COG3789	protein conserved in bacteria
C3029_RS02600	COG1842	Phage shock protein A
C3029_RS02610	COG3766	membrane
C3029_RS02615	COG5463	Belongs to the UPF0441 family
C3029_RS02620	COG0754	glutathionylspermidine amidase activity
C3029_RS02625	COG1960	acyl-CoA dehydrogenase activity
C3029_RS02635	COG3650	response to hydrogen peroxide
C3029_RS02640	COG1073	alpha beta
C3029_RS02655	COG3037	sugar-specific permease SgaT UlaA
C3029_RS02660	COG3414	Phosphotransferase system galactitol-specific IIB component
C3029_RS02705	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
C3029_RS02715	COG2271	Major facilitator Superfamily
C3029_RS02720	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
C3029_RS02725	COG4670	ketone body catabolic process
C3029_RS02730	COG1024	Enoyl-CoA hydratase
C3029_RS02740	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS02745	COG1309	transcriptional regulator
C3029_RS02750	COG3061	Opacity-associated protein A
C3029_RS02755	COG0545	Peptidyl-prolyl cis-trans isomerase
C3029_RS02760	COG1113	amino acid transport
C3029_RS02770	COG0697	spore germination
C3029_RS02775	COG0702	epimerase
C3029_RS02780	COG1733	regulation of RNA biosynthetic process
C3029_RS02785	COG0737	Belongs to the 5'-nucleotidase family
C3029_RS02790	COG1218	3'(2'),5'-bisphosphate nucleotidase
C3029_RS02795	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
C3029_RS02805	COG1253	flavin adenine dinucleotide binding
C3029_RS02820	COG0729	surface antigen
C3029_RS02825	COG2911	Protein conserved in bacteria
C3029_RS02830	COG2105	PFAM AIG2 family protein
C3029_RS02835	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
C3029_RS02840	COG1879	ABC-type sugar transport system periplasmic component
C3029_RS02845	COG1129	ABC transporter
C3029_RS02850	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3029_RS02855	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3029_RS02865	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C3029_RS02875	COG0312	modulator of DNA gyrase
C3029_RS02880	COG3783	Cytochrome b(562)
C3029_RS02885	COG0602	queuosine metabolic process
C3029_RS02890	COG1328	CTP reductase activity
C3029_RS02895	COG0366	Alpha amylase catalytic
C3029_RS02900	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS02900	COG1263	PTS System
C3029_RS02905	COG1609	Transcriptional regulator
C3029_RS02910	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
C3029_RS02915	COG0251	oxidation-reduction process
C3029_RS02940	COG0251	oxidation-reduction process
C3029_RS02945	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS02950	COG1309	transcriptional regulator
C3029_RS02955	COG2731	YhcH YjgK YiaL family protein
C3029_RS02970	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
C3029_RS02975	COG0456	acetyltransferase
C3029_RS02980	COG4269	membrane
C3029_RS02990	COG2927	DNA polymerase III (CHI subunit)
C3029_RS03000	COG0795	lipopolysaccharide-transporting ATPase activity
C3029_RS03005	COG0795	lipopolysaccharide-transporting ATPase activity
C3029_RS03010	COG0433	COG0433 Predicted ATPase
C3029_RS03015	COG1609	Transcriptional regulator
C3029_RS03020	COG2610	gluconate transmembrane transporter activity
C3029_RS03025	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS03030	COG1063	alcohol dehydrogenase
C3029_RS03035	COG3265	gluconokinase activity
C3029_RS03040	COG1064	alcohol dehydrogenase
C3029_RS03050	COG0582	viral genome integration into host DNA
C3029_RS03075	COG3385	transposase activity
C3029_RS03080	COG2814	Major facilitator Superfamily
C3029_RS03085	COG0673	inositol 2-dehydrogenase activity
C3029_RS03115	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3029_RS03135	COG2085	NADP oxidoreductase coenzyme F420-dependent
C3029_RS03140	COG1120	ATPase activity
C3029_RS03145	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3029_RS03150	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3029_RS03155	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
C3029_RS03160	COG4772	TonB-dependent receptor
C3029_RS03165	COG3712	iron ion homeostasis
C3029_RS03170	COG1595	DNA-templated transcription, initiation
C3029_RS03200	COG1662	PFAM IS1 transposase
C3029_RS03215	COG3188	usher protein
C3029_RS03225	COG0583	DNA-binding transcription factor activity
C3029_RS03240	COG3385	transposase activity
C3029_RS03260	COG4735	regulation of single-species biofilm formation
C3029_RS03265	COG1584	GPR1 FUN34 yaaH family protein
C3029_RS03270	COG0521	Mo-molybdopterin cofactor biosynthetic process
C3029_RS03280	COG1115	amino acid carrier protein
C3029_RS03300	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
C3029_RS03310	COG0527	aspartate kinase activity
C3029_RS03310	COG0460	homoserine dehydrogenase
C3029_RS03320	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
C3029_RS03330	COG0745	RESPONSE REGULATOR receiver
C3029_RS03335	COG4452	Inner membrane protein CreD
C3029_RS03340	COG2205	protein histidine kinase activity
C3029_RS03345	COG0745	RESPONSE REGULATOR receiver
C3029_RS03350	COG3045	CreA protein
C3029_RS03355	COG3708	Transcriptional regulator
C3029_RS03355	COG2207	Transcriptional regulator
C3029_RS03375	COG0741	lytic transglycosylase activity
C3029_RS03380	COG0488	(ABC) transporter
C3029_RS03390	COG3172	ATPase kinase involved in NAD metabolism
C3029_RS03390	COG1056	cytidyltransferase-related domain
C3029_RS03395	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
C3029_RS03400	COG0560	Phosphoserine phosphatase
C3029_RS03405	COG3726	membrane protein affecting hemolysin expression
C3029_RS03415	COG3550	peptidyl-serine autophosphorylation
C3029_RS03445	COG1328	CTP reductase activity
C3029_RS03450	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
C3029_RS03455	COG0084	hydrolase, TatD family'
C3029_RS03460	COG4667	esterase of the alpha-beta hydrolase superfamily
C3029_RS03470	COG2823	Periplasmic or secreted lipoprotein
C3029_RS03480	COG1011	Hydrolase
C3029_RS03485	COG0456	acetyltransferase
C3029_RS03490	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
C3029_RS03520	COG4114	ferric iron reductase
C3029_RS03525	COG2197	response regulator
C3029_RS03530	COG2197	response regulator
C3029_RS03535	COG2966	Psort location CytoplasmicMembrane, score
C3029_RS03550	COG1484	DNA-dependent DNA replication
C3029_RS03570	COG5457	Domain of unknown function (DUF1127)
C3029_RS03575	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3029_RS03585	COG2814	Major facilitator Superfamily
C3029_RS03590	COG2733	membrane
C3029_RS03595	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
C3029_RS03600	COG1924	4 iron, 4 sulfur cluster binding
C3029_RS03610	COG3204	pilus organization
C3029_RS03615	COG0477	Major facilitator Superfamily
C3029_RS03625	COG3366	ferrous iron transmembrane transporter activity
C3029_RS03630	COG0700	Nucleoside recognition
C3029_RS03635	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
C3029_RS03640	COG0583	DNA-binding transcription factor activity
C3029_RS03665	COG2186	Transcriptional regulator
C3029_RS03675	COG0246	Mannitol dehydrogenase
C3029_RS03690	COG2610	gluconate transmembrane transporter activity
C3029_RS03695	COG3539	Fimbrial protein
C3029_RS03700	COG3539	Fimbrial protein
C3029_RS03705	COG3539	Fimbrial protein
C3029_RS03710	COG3188	usher protein
C3029_RS03715	COG3121	Chaperone
C3029_RS03720	COG3539	Fimbrial protein
C3029_RS03725	COG3539	Fimbrial protein
C3029_RS03735	COG4974	Belongs to the 'phage' integrase family
C3029_RS03745	COG0582	viral genome integration into host DNA
C3029_RS03760	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
C3029_RS03765	COG3055	Converts alpha-N-acetylneuranimic acid (Neu5Ac) to the beta-anomer, accelerating the equilibrium between the alpha- and beta-anomers. Probably facilitates sialidase-negative bacteria to compete sucessfully for limited amounts of extracellular Neu5Ac, which is likely taken up in the beta-anomer. In addition, the rapid removal of sialic acid from solution might be advantageous to the bacterium to damp down host responses
C3029_RS03800	COG3153	acetyltransferase
C3029_RS03805	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
C3029_RS03810	COG1363	Peptidase, m42
C3029_RS03815	COG3414	Phosphotransferase system galactitol-specific IIB component
C3029_RS03820	COG3775	system Galactitol-specific IIC component
C3029_RS03825	COG0434	BtpA family
C3029_RS03830	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS03835	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C3029_RS03840	COG1349	DNA-binding transcription factor activity
C3029_RS03845	COG1662	PFAM IS1 transposase
C3029_RS03865	COG0196	riboflavin kinase activity
C3029_RS03880	COG1047	Peptidyl-prolyl cis-trans
C3029_RS03910	COG0505	Belongs to the CarA family
C3029_RS03915	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
C3029_RS03970	COG0644	oxidoreductase
C3029_RS03975	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
C3029_RS03980	COG2271	Major facilitator Superfamily
C3029_RS03995	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
C3029_RS04020	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C3029_RS04025	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
C3029_RS04030	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
C3029_RS04035	COG0564	pseudouridine synthase activity
C3029_RS04045	COG0417	DNA replication proofreading
C3029_RS04050	COG0235	Class ii aldolase
C3029_RS04065	COG4977	sequence-specific DNA binding
C3029_RS04070	COG0586	Pfam SNARE associated Golgi protein
C3029_RS04080	COG1178	ABC-type Fe3 transport system permease component
C3029_RS04085	COG4143	(ABC) transporter
C3029_RS04100	COG2814	Major facilitator Superfamily
C3029_RS04115	COG0473	3-isopropylmalate dehydrogenase activity
C3029_RS04130	COG0583	DNA-binding transcription factor activity
C3029_RS04135	COG0028	Belongs to the TPP enzyme family
C3029_RS04140	COG0440	acetolactate synthase activity
C3029_RS04150	COG1609	Transcriptional regulator
C3029_RS04165	COG3116	cell division
C3029_RS04170	COG0768	penicillin binding
C3029_RS04175	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C3029_RS04180	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
C3029_RS04190	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
C3029_RS04195	COG0772	Belongs to the SEDS family
C3029_RS04210	COG1181	Belongs to the D-alanine--D-alanine ligase family
C3029_RS04215	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
C3029_RS04220	COG0849	cell division
C3029_RS04225	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
C3029_RS04245	COG0494	nUDIX hydrolase
C3029_RS04265	COG0237	dephospho-CoA kinase activity
C3029_RS04275	COG1459	type II secretion system
C3029_RS04280	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
C3029_RS04285	COG4969	Belongs to the N-Me-Phe pilin family
C3029_RS04295	COG0157	Belongs to the NadC ModD family
C3029_RS04300	COG3023	N-Acetylmuramoyl-L-alanine amidase
C3029_RS04305	COG3725	Membrane protein required for beta-lactamase induction
C3029_RS04310	COG1113	amino acid transport
C3029_RS04315	COG2186	Transcriptional regulator
C3029_RS04320	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
C3029_RS04325	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3029_RS04330	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3029_RS04335	COG3064	Membrane
C3029_RS04340	COG1049	propionate catabolic process, 2-methylcitrate cycle
C3029_RS04365	COG2132	Multicopper oxidase
C3029_RS04370	COG4993	Dehydrogenase
C3029_RS04375	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
C3029_RS04380	COG0288	reversible hydration of carbon dioxide
C3029_RS04385	COG1131	(ABC) transporter
C3029_RS04390	COG0842	Transport permease protein
C3029_RS04395	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS04400	COG0726	polysaccharide deacetylase
C3029_RS04410	COG5464	transposase or invertase
C3029_RS04425	COG3539	Fimbrial protein
C3029_RS04430	COG3539	Fimbrial protein
C3029_RS04435	COG3539	Fimbrial protein
C3029_RS04440	COG3539	Fimbrial protein
C3029_RS04445	COG3188	usher protein
C3029_RS04450	COG3121	Chaperone
C3029_RS04455	COG3539	Fimbrial protein
C3029_RS04460	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
C3029_RS04465	COG0617	tRNA 3'-terminal CCA addition
C3029_RS04475	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
C3029_RS04485	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
C3029_RS04490	COG1643	Atp-dependent helicase
C3029_RS04500	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3029_RS04505	COG4774	siderophore transport
C3029_RS04525	COG4774	siderophore transport
C3029_RS04530	COG1120	ATPase activity
C3029_RS04535	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3029_RS04540	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3029_RS04560	COG2860	membrane
C3029_RS04565	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3029_RS04580	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3029_RS04585	COG3835	regulator
C3029_RS04595	COG1408	metallophosphoesterase
C3029_RS04610	COG0024	Methionine aminopeptidase
C3029_RS04635	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
C3029_RS04640	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
C3029_RS04645	COG0575	Belongs to the CDS family
C3029_RS04650	COG0750	zinc metalloprotease
C3029_RS04660	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
C3029_RS04665	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3029_RS04690	COG0587	DNA-directed DNA polymerase activity
C3029_RS04700	COG1982	Orn Lys Arg decarboxylase major
C3029_RS04705	COG0346	lactoylglutathione lyase activity
C3029_RS04710	COG0037	tRNA processing
C3029_RS04715	COG4568	rho-dependent transcription termination
C3029_RS04725	COG4681	YaeQ
C3029_RS04730	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
C3029_RS04735	COG3015	lipoprotein NlpE involved in copper resistance
C3029_RS04740	COG0791	NLP P60 protein
C3029_RS04750	COG1720	tRNA m6t6A37 methyltransferase activity
C3029_RS04760	COG1464	Belongs to the NlpA lipoprotein family
C3029_RS04765	COG2011	ABC-type metal ion transport system permease component
C3029_RS04770	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
C3029_RS04775	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
C3029_RS04810	COG0656	L-ascorbic acid biosynthetic process
C3029_RS04815	COG0583	DNA-binding transcription factor activity
C3029_RS04825	COG2226	methyltransferase
C3029_RS04830	COG0741	lytic transglycosylase activity
C3029_RS04830	COG1388	LysM domain
C3029_RS04840	COG2226	methyltransferase
C3029_RS04850	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C3029_RS04870	COG5433	transposase activity
C3029_RS04875	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
C3029_RS04885	COG1960	acyl-CoA dehydrogenase activity
C3029_RS04895	COG0121	glutamine amidotransferase
C3029_RS04900	COG3034	peptidoglycan biosynthetic process
C3029_RS04905	COG3041	Addiction module toxin RelE StbE family
C3029_RS04910	COG3077	Addiction module antitoxin, RelB DinJ family
C3029_RS04915	COG0791	NLP P60 protein
C3029_RS04920	COG1943	Transposase
C3029_RS04940	COG2161	toxin-antitoxin pair type II binding
C3029_RS04950	COG0454	-acetyltransferase
C3029_RS04955	COG1690	Belongs to the RtcB family
C3029_RS04960	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
C3029_RS04965	COG2195	Cleaves the N-terminal amino acid of tripeptides
C3029_RS04990	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C3029_RS05010	COG0583	DNA-binding transcription factor activity
C3029_RS05015	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
C3029_RS05020	COG1529	Aldehyde oxidase and xanthine dehydrogenase
C3029_RS05025	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
C3029_RS05030	COG2080	2 iron, 2 sulfur cluster binding
C3029_RS05035	COG3477	response to acidic pH
C3029_RS05045	COG0727	PFAM Uncharacterised protein family (UPF0153)
C3029_RS05050	COG3121	Chaperone
C3029_RS05060	COG3188	usher protein
C3029_RS05100	COG1388	LysM domain
C3029_RS05105	COG3708	Transcriptional regulator
C3029_RS05105	COG2207	Transcriptional regulator
C3029_RS05110	COG3059	membrane
C3029_RS05120	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3029_RS05125	COG2207	Transcriptional regulator
C3029_RS05130	COG0247	lactate metabolic process
C3029_RS05135	COG1139	Iron-sulfur cluster binding protein
C3029_RS05140	COG1556	Lactate utilization protein
C3029_RS05165	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3029_RS05175	COG2771	luxR family
C3029_RS05175	COG2200	EAL domain
C3029_RS05180	COG0583	DNA-binding transcription factor activity
C3029_RS05190	COG0666	response to abiotic stimulus
C3029_RS05200	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3029_RS05205	COG1304	FMN binding
C3029_RS05215	COG0549	Belongs to the carbamate kinase family
C3029_RS05220	COG0402	S-adenosylhomocysteine deaminase activity
C3029_RS05225	COG1064	alcohol dehydrogenase
C3029_RS05240	COG1280	lysine exporter protein (LysE YggA)
C3029_RS05250	COG3829	transcription factor binding
C3029_RS05255	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
C3029_RS05260	COG0372	Belongs to the citrate synthase family
C3029_RS05265	COG2079	MmgE PrpD family protein
C3029_RS05270	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3029_RS05275	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
C3029_RS05280	COG0402	S-adenosylhomocysteine deaminase activity
C3029_RS05285	COG0583	DNA-binding transcription factor activity
C3029_RS05290	COG0288	reversible hydration of carbon dioxide
C3029_RS05300	COG2807	transmembrane transport
C3029_RS05305	COG0110	maltose O-acetyltransferase activity
C3029_RS05310	COG2223	nitrite transmembrane transporter activity
C3029_RS05330	COG1609	Transcriptional regulator
C3029_RS05335	COG1414	Transcriptional regulator
C3029_RS05355	COG3971	2-oxopent-4-enoate hydratase activity
C3029_RS05370	COG2814	Major facilitator Superfamily
C3029_RS05375	COG3122	Protein conserved in bacteria
C3029_RS05400	COG1662	PFAM IS1 transposase
C3029_RS05405	COG4521	taurine ABC transporter
C3029_RS05410	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
C3029_RS05415	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3029_RS05420	COG2175	clavaminate synthase activity
C3029_RS05425	COG0113	porphobilinogen synthase activity
C3029_RS05430	COG3468	outer membrane autotransporter barrel domain protein
C3029_RS05435	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3029_RS05440	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
C3029_RS05450	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
C3029_RS05470	COG1181	Belongs to the D-alanine--D-alanine ligase family
C3029_RS05485	COG1785	Belongs to the alkaline phosphatase family
C3029_RS05495	COG3706	GGDEF domain
C3029_RS05500	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
C3029_RS05525	COG4126	flavin adenine dinucleotide binding
C3029_RS05540	COG1662	PFAM IS1 transposase
C3029_RS05550	COG1940	carbohydrate kinase activity
C3029_RS05555	COG2814	Major facilitator Superfamily
C3029_RS05560	COG0419	ATPase involved in DNA repair
C3029_RS05565	COG0420	3'-5' exonuclease activity
C3029_RS05570	COG0745	RESPONSE REGULATOR receiver
C3029_RS05575	COG5002	protein histidine kinase activity
C3029_RS05580	COG1114	Component of the transport system for branched-chain amino acids
C3029_RS05585	COG1113	amino acid transport
C3029_RS05590	COG0366	Alpha amylase catalytic
C3029_RS05610	COG1862	Preprotein translocase
C3029_RS05615	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C3029_RS05620	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C3029_RS05625	COG1403	HNH endonuclease
C3029_RS05635	COG3248	Nucleoside-binding outer membrane protein
C3029_RS05640	COG4238	major outer membrane lipoprotein
C3029_RS05650	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3029_RS05650	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3029_RS05665	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
C3029_RS05670	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
C3029_RS05675	COG0667	Aldo Keto reductase
C3029_RS05685	COG0142	geranyltranstransferase activity
C3029_RS05700	COG0693	protein deglycase activity
C3029_RS05705	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
C3029_RS05715	COG2814	Major facilitator Superfamily
C3029_RS05740	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
C3029_RS05745	COG1845	cytochrome c oxidase, subunit III
C3029_RS05750	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C3029_RS05755	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
C3029_RS05760	COG2223	nitrite transmembrane transporter activity
C3029_RS05765	COG3056	Lipoprotein
C3029_RS05770	COG0271	Belongs to the BolA IbaG family
C3029_RS05795	COG3385	transposase activity
C3029_RS05800	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
C3029_RS05805	COG0776	regulation of translation
C3029_RS05810	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C3029_RS05815	COG1555	photosystem II stabilization
C3029_RS05820	COG0824	Thioesterase
C3029_RS05830	COG4533	DNA binding
C3029_RS05840	COG1522	sequence-specific DNA binding
C3029_RS05845	COG1132	(ABC) transporter
C3029_RS05850	COG1132	(ABC) transporter
C3029_RS05855	COG0347	Belongs to the P(II) protein family
C3029_RS05860	COG0004	ammonium transporteR
C3029_RS05865	COG1946	Acyl-CoA thioesterase
C3029_RS05870	COG3126	Type III secretion system lipoprotein chaperone (YscW)
C3029_RS05875	COG3695	enzyme binding
C3029_RS05885	COG5507	3-demethylubiquinone-9 3-methyltransferase
C3029_RS05890	COG4943	cyclic-guanylate-specific phosphodiesterase activity
C3029_RS05900	COG0110	maltose O-acetyltransferase activity
C3029_RS05915	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3029_RS05920	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3029_RS05925	COG1309	transcriptional regulator
C3029_RS05930	COG1196	nuclear chromosome segregation
C3029_RS05930	COG3264	Mechanosensitive ion channel
C3029_RS05945	COG3923	Primosomal replication protein n
C3029_RS05950	COG2832	Protein of unknown function (DUF454)
C3029_RS05960	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
C3029_RS05995	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3029_RS06000	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C3029_RS06000	COG4651	solute:proton antiporter activity
C3029_RS06005	COG2223	nitrite transmembrane transporter activity
C3029_RS06010	COG0737	Belongs to the 5'-nucleotidase family
C3029_RS06015	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
C3029_RS06020	COG3735	TraB family
C3029_RS06025	COG3093	addiction module antidote protein HigA
C3029_RS06030	COG2217	Heavy metal translocating P-type atpase
C3029_RS06035	COG2066	Belongs to the glutaminase family
C3029_RS06040	COG0531	amino acid
C3029_RS06045	COG0789	Transcriptional regulator
C3029_RS06050	COG1585	Membrane protein implicated in regulation of membrane protease activity
C3029_RS06055	COG0330	HflC and HflK could
C3029_RS06060	COG4619	ABC transporter
C3029_RS06065	COG0390	transport system, permease component
C3029_RS06070	COG3118	belongs to the thioredoxin family
C3029_RS06075	COG0300	oxidoreductase activity
C3029_RS06080	COG2755	lipolytic protein G-D-S-L family
C3029_RS06085	COG4181	ATPase activity
C3029_RS06090	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
C3029_RS06095	COG3209	COG3209 Rhs family protein
C3029_RS06105	COG3209	COG3209 Rhs family protein
C3029_RS06115	COG2801	Transposase and inactivated derivatives
C3029_RS06125	COG0583	DNA-binding transcription factor activity
C3029_RS06135	COG1414	Transcriptional regulator
C3029_RS06140	COG3960	tartronate-semialdehyde synthase activity
C3029_RS06145	COG3622	Belongs to the hyi family
C3029_RS06150	COG2084	Dehydrogenase
C3029_RS06155	COG1953	Uracil, thiamine, allantoin
C3029_RS06165	COG2233	PERMEase
C3029_RS06170	COG1929	Belongs to the glycerate kinase type-1 family
C3029_RS06175	COG3257	ureidoglycine aminohydrolase activity
C3029_RS06180	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C3029_RS06185	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
C3029_RS06190	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3029_RS06195	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3029_RS06205	COG0549	Belongs to the carbamate kinase family
C3029_RS06210	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
C3029_RS06215	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
C3029_RS06225	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
C3029_RS06235	COG1988	membrane-bound metal-dependent
C3029_RS06240	COG2501	S4 domain
C3029_RS06250	COG3539	Fimbrial protein
C3029_RS06255	COG3121	Chaperone
C3029_RS06260	COG3188	usher protein
C3029_RS06265	COG3539	Fimbrial protein
C3029_RS06270	COG3539	Fimbrial protein
C3029_RS06275	COG2197	response regulator
C3029_RS06285	COG0582	viral genome integration into host DNA
C3029_RS06320	COG2076	Multidrug Resistance protein
C3029_RS06330	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
C3029_RS06335	COG1881	PFAM PEBP family protein
C3029_RS06340	COG2207	Transcriptional regulator
C3029_RS06380	COG1662	PFAM IS1 transposase
C3029_RS06395	COG3772	lysozyme
C3029_RS06415	COG4220	transposase activity
C3029_RS06435	COG5002	protein histidine kinase activity
C3029_RS06440	COG0745	RESPONSE REGULATOR receiver
C3029_RS06445	COG1538	Outer membrane efflux protein
C3029_RS06450	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3029_RS06455	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3029_RS06460	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3029_RS06465	COG1113	amino acid transport
C3029_RS06470	COG0668	transmembrane transport
C3029_RS06475	COG0778	Nitroreductase
C3029_RS06480	COG2315	Protein conserved in bacteria
C3029_RS06500	COG2963	transposase activity
C3029_RS06505	COG2801	Transposase and inactivated derivatives
C3029_RS06520	COG3385	transposase activity
C3029_RS06525	COG2977	Belongs to the P-Pant transferase superfamily
C3029_RS06530	COG4771	TonB-dependent receptor
C3029_RS06535	COG2382	esterase
C3029_RS06540	COG3251	PFAM MbtH domain protein
C3029_RS06545	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
C3029_RS06545	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
C3029_RS06550	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
C3029_RS06555	COG1120	ATPase activity
C3029_RS06560	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3029_RS06565	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3029_RS06575	COG4592	Periplasmic binding protein
C3029_RS06580	COG1169	isochorismate synthase
C3029_RS06585	COG1021	2,3-dihydroxybenzoate-AMP ligase
C3029_RS06590	COG1535	isochorismatase
C3029_RS06590	COG3433	isochorismatase activity
C3029_RS06595	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS06600	COG2050	protein possibly involved in aromatic compounds catabolism
C3029_RS06610	COG2879	small protein
C3029_RS06615	COG0371	Dehydrogenase
C3029_RS06620	COG0436	Aminotransferase
C3029_RS06625	COG1475	DNA binding
C3029_RS06630	COG3969	phosphoadenosine phosphosulfate
C3029_RS06635	COG1662	PFAM IS1 transposase
C3029_RS06640	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3029_RS06645	COG0450	alkyl hydroperoxide reductase
C3029_RS06650	COG3634	alkyl hydroperoxide reductase activity
C3029_RS06655	COG0589	response to stress
C3029_RS06660	COG1063	alcohol dehydrogenase
C3029_RS06670	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C3029_RS06675	COG3719	Belongs to the RNase T2 family
C3029_RS06680	COG0471	metal ion transport
C3029_RS06695	COG3051	citrate lyase alpha subunit
C3029_RS06700	COG2301	Belongs to the HpcH HpaI aldolase family
C3029_RS06710	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
C3029_RS06715	COG1662	PFAM IS1 transposase
C3029_RS06720	COG3290	protein histidine kinase activity
C3029_RS06725	COG4565	transcriptional regulatory protein
C3029_RS06730	COG3069	C4-dicarboxylate transmembrane transporter activity
C3029_RS06750	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
C3029_RS06755	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
C3029_RS06765	COG0583	DNA-binding transcription factor activity
C3029_RS06785	COG1686	Belongs to the peptidase S11 family
C3029_RS06790	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
C3029_RS06795	COG0772	Belongs to the SEDS family
C3029_RS06800	COG0768	penicillin binding
C3029_RS06810	COG0799	negative regulation of ribosome biogenesis
C3029_RS06815	COG0406	alpha-ribazole phosphatase activity
C3029_RS06825	COG1466	dna polymerase III delta subunit
C3029_RS06840	COG2888	peptidyl-tyrosine sulfation
C3029_RS06855	COG2214	Heat shock protein DnaJ domain protein
C3029_RS06860	COG0443	Heat shock 70 kDa protein
C3029_RS06870	COG1126	abc transporter atp-binding protein
C3029_RS06875	COG2963	transposase activity
C3029_RS06880	COG2801	Transposase and inactivated derivatives
C3029_RS06885	COG1126	abc transporter atp-binding protein
C3029_RS06890	COG0765	amino acid transport
C3029_RS06895	COG0765	amino acid transport
C3029_RS06900	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3029_RS06910	COG0815	Transfers the fatty acyl group on membrane lipoproteins
C3029_RS06915	COG4535	Mg2 and Co2 transporter CorC
C3029_RS06925	COG1702	phosphate starvation-inducible protein PhoH
C3029_RS06935	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3029_RS06975	COG0367	asparagine synthase
C3029_RS06980	COG0647	UMP catabolic process
C3029_RS06985	COG1846	Transcriptional regulator
C3029_RS06985	COG1940	carbohydrate kinase activity
C3029_RS06990	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
C3029_RS07000	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS07000	COG2190	(PTS) system
C3029_RS07000	COG1263	PTS System
C3029_RS07020	COG0735	belongs to the Fur family
C3029_RS07035	COG0716	FMN binding
C3029_RS07045	COG0596	Alpha beta hydrolase
C3029_RS07050	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
C3029_RS07055	COG0033	Phosphoglucomutase
C3029_RS07075	COG0531	amino acid
C3029_RS07080	COG1982	Orn Lys Arg decarboxylase major
C3029_RS07090	COG0745	RESPONSE REGULATOR receiver
C3029_RS07095	COG2205	protein histidine kinase activity
C3029_RS07125	COG3209	COG3209 Rhs family protein
C3029_RS07130	COG3209	COG3209 Rhs family protein
C3029_RS07140	COG3209	COG3209 Rhs family protein
C3029_RS07155	COG5433	transposase activity
C3029_RS07165	COG5433	transposase activity
C3029_RS07170	COG3272	Protein of unknown function (DUF1722)
C3029_RS07175	COG0415	Belongs to the DNA photolyase family
C3029_RS07185	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
C3029_RS07190	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
C3029_RS07195	COG1984	allophanate hydrolase subunit 2
C3029_RS07210	COG3180	Ammonia monooxygenase
C3029_RS07215	COG3539	Fimbrial protein
C3029_RS07220	COG3121	Chaperone
C3029_RS07225	COG3188	usher protein
C3029_RS07230	COG3539	Fimbrial protein
C3029_RS07235	COG0372	Belongs to the citrate synthase family
C3029_RS07245	COG2009	succinate dehydrogenase
C3029_RS07250	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
C3029_RS07255	COG1053	succinate dehydrogenase
C3029_RS07260	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
C3029_RS07270	COG0567	Dehydrogenase, E1 component
C3029_RS07275	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3029_RS07285	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3029_RS07290	COG2188	Transcriptional regulator
C3029_RS07295	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS07295	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS07295	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS07300	COG0383	alpha-mannosidase activity
C3029_RS07310	COG1271	oxidase subunit
C3029_RS07315	COG1294	oxidase, subunit
C3029_RS07320	COG4890	Cyd operon protein YbgT
C3029_RS07325	COG3790	cyd operon protein YbgE
C3029_RS07330	COG0824	Thioesterase
C3029_RS07335	COG0811	peptide transport
C3029_RS07340	COG0848	biopolymer transport protein
C3029_RS07345	COG3064	Membrane
C3029_RS07355	COG2885	chlorophyll binding
C3029_RS07360	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
C3029_RS07420	COG3201	nicotinamide mononucleotide transporter
C3029_RS07425	COG1230	cation diffusion facilitator family transporter
C3029_RS07440	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C3029_RS07455	COG4677	pectinesterase activity
C3029_RS07460	COG0582	viral genome integration into host DNA
C3029_RS07620	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C3029_RS07650	COG5562	phage envelope protein
C3029_RS07665	COG4220	transposase activity
C3029_RS07685	COG1030	water channel activity
C3029_RS07735	COG1196	nuclear chromosome segregation
C3029_RS07770	COG4677	pectinesterase activity
C3029_RS07795	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3029_RS07800	COG1609	Transcriptional regulator
C3029_RS07810	COG0582	viral genome integration into host DNA
C3029_RS07945	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C3029_RS07975	COG5562	phage envelope protein
C3029_RS07985	COG4220	transposase activity
C3029_RS08005	COG1030	water channel activity
C3029_RS08055	COG1196	nuclear chromosome segregation
C3029_RS08090	COG4677	pectinesterase activity
C3029_RS08115	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3029_RS08120	COG1609	Transcriptional regulator
C3029_RS08130	COG1881	PFAM PEBP family protein
C3029_RS08135	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C3029_RS08150	COG2226	methyltransferase
C3029_RS08155	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
C3029_RS08165	COG0391	Required for morphogenesis under gluconeogenic growth conditions
C3029_RS08175	COG0521	Mo-molybdopterin cofactor biosynthetic process
C3029_RS08185	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
C3029_RS08190	COG0314	molybdopterin synthase activity
C3029_RS08195	COG0670	Belongs to the BI1 family
C3029_RS08200	COG0670	Belongs to the BI1 family
C3029_RS08205	COG0392	lysyltransferase activity
C3029_RS08210	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3029_RS08215	COG3568	Endonuclease Exonuclease Phosphatase
C3029_RS08225	COG0842	Transport permease protein
C3029_RS08230	COG0842	Transport permease protein
C3029_RS08235	COG1131	(ABC) transporter
C3029_RS08245	COG1309	transcriptional regulator
C3029_RS08250	COG0513	Belongs to the DEAD box helicase family
C3029_RS08255	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
C3029_RS08260	COG1199	ATP-dependent helicase activity
C3029_RS08265	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C3029_RS08270	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
C3029_RS08280	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
C3029_RS08290	COG4774	siderophore transport
C3029_RS08305	COG0668	transmembrane transport
C3029_RS08310	COG1126	abc transporter atp-binding protein
C3029_RS08315	COG0765	amino acid transport
C3029_RS08320	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3029_RS08335	COG5006	permease, DMT superfamily
C3029_RS08340	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
C3029_RS08345	COG2194	sulfuric ester hydrolase activity
C3029_RS08355	COG1321	iron dependent repressor
C3029_RS08360	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
C3029_RS08365	COG1376	ErfK ybiS ycfS ynhG family protein
C3029_RS08370	COG0488	(ABC) transporter
C3029_RS08380	COG0561	phosphatase activity
C3029_RS08385	COG1882	Formate acetyltransferase
C3029_RS08390	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
C3029_RS08395	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
C3029_RS08400	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C3029_RS08405	COG0303	'Molybdopterin
C3029_RS08410	COG1446	asparaginase
C3029_RS08415	COG4172	Belongs to the ABC transporter superfamily
C3029_RS08420	COG0747	negative chemotaxis
C3029_RS08430	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3029_RS08440	COG2199	diguanylate cyclase activity
C3029_RS08455	COG2133	pyrroloquinoline quinone binding
C3029_RS08460	COG0625	glutathione transferase activity
C3029_RS08465	COG1686	Belongs to the peptidase S11 family
C3029_RS08470	COG1349	DNA-binding transcription factor activity
C3029_RS08475	COG0671	phosphoesterase, PA-phosphatase related
C3029_RS08480	COG2814	Major facilitator Superfamily
C3029_RS08490	COG0561	phosphatase activity
C3029_RS08495	COG0738	Major facilitator superfamily
C3029_RS08500	COG3226	Transcriptional regulator
C3029_RS08510	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
C3029_RS08555	COG4695	Portal protein
C3029_RS08625	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
C3029_RS08630	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
C3029_RS08650	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
C3029_RS08660	COG0778	Nitroreductase
C3029_RS08680	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
C3029_RS08685	COG3842	ATPase activity
C3029_RS08690	COG1176	ABC-type spermidine putrescine transport system, permease component I
C3029_RS08695	COG1177	transmembrane transport
C3029_RS08710	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3029_RS08715	COG4160	amino acid transport
C3029_RS08720	COG4215	(ABC) transporter
C3029_RS08725	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3029_RS08730	COG1126	abc transporter atp-binding protein
C3029_RS08745	COG3023	N-Acetylmuramoyl-L-alanine amidase
C3029_RS08750	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3029_RS08755	COG0702	epimerase
C3029_RS08760	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
C3029_RS08765	COG0028	Belongs to the TPP enzyme family
C3029_RS08770	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3029_RS08780	COG2431	L-lysine efflux transmembrane transporter activity
C3029_RS08795	COG3593	DNA synthesis involved in DNA repair
C3029_RS08800	COG2990	Protein conserved in bacteria
C3029_RS08805	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3029_RS08810	COG1136	(ABC) transporter
C3029_RS08810	COG0577	efflux transmembrane transporter activity
C3029_RS08815	COG1278	Cold shock
C3029_RS08825	COG0542	response to heat
C3029_RS08845	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
C3029_RS08850	COG4988	ABC transporter
C3029_RS08855	COG1522	sequence-specific DNA binding
C3029_RS08860	COG1674	ftsk spoiiie
C3029_RS08860	COG1178	ABC-type Fe3 transport system permease component
C3029_RS08870	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
C3029_RS08880	COG0243	molybdopterin cofactor binding
C3029_RS08885	COG0437	4 iron, 4 sulfur cluster binding
C3029_RS08890	COG3302	dmso reductase anchor subunit
C3029_RS08895	COG1335	isochorismatase
C3029_RS08905	COG0531	amino acid
C3029_RS08910	COG0583	DNA-binding transcription factor activity
C3029_RS08915	COG2249	NAD(P)H dehydrogenase (quinone) activity
C3029_RS08920	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
C3029_RS08925	COG1882	Formate acetyltransferase
C3029_RS08930	COG2116	formate transmembrane transporter activity
C3029_RS08935	COG1944	ATP diphosphatase activity
C3029_RS08940	COG2323	membrane
C3029_RS08955	COG0501	Belongs to the peptidase M48B family
C3029_RS08965	COG0539	negative regulation of cytoplasmic translation
C3029_RS08975	COG0658	competence protein
C3029_RS08975	COG2333	competence protein COMEC
C3029_RS08980	COG1132	(ABC) transporter
C3029_RS08985	COG1663	tetraacyldisaccharide 4'-kinase activity
C3029_RS08990	COG3214	Protein conserved in bacteria
C3029_RS09005	COG3173	Aminoglycoside phosphotransferase
C3029_RS09010	COG1434	Gram-negative-bacterium-type cell wall biogenesis
C3029_RS09015	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
C3029_RS09025	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
C3029_RS09035	COG2989	Protein conserved in bacteria
C3029_RS09040	COG3108	Peptidase M15
C3029_RS09045	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3029_RS09050	COG1448	Aminotransferase
C3029_RS09075	COG0308	aminopeptidase N
C3029_RS09080	COG1116	anion transmembrane transporter activity
C3029_RS09085	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3029_RS09095	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
C3029_RS09100	COG0431	NADPH-dependent FMN reductase
C3029_RS09105	COG3539	Fimbrial protein
C3029_RS09110	COG3121	Chaperone
C3029_RS09115	COG3188	usher protein
C3029_RS09120	COG3539	Fimbrial protein
C3029_RS09125	COG3539	Fimbrial protein
C3029_RS09130	COG3539	Fimbrial protein
C3029_RS09135	COG3121	Chaperone
C3029_RS09150	COG0633	Ferredoxin
C3029_RS09150	COG3217	Mosc domain protein beta barrel domain protein
C3029_RS09160	COG0488	(ABC) transporter
C3029_RS09165	COG2995	paraquat-inducible protein a
C3029_RS09170	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C3029_RS09170	COG3008	intermembrane lipid transfer
C3029_RS09175	COG3009	Protein conserved in bacteria
C3029_RS09180	COG3130	regulation of translation
C3029_RS09190	COG1067	ATP-dependent peptidase activity
C3029_RS09200	COG2885	chlorophyll binding
C3029_RS09200	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
C3029_RS09215	COG3070	regulator of competence-specific genes
C3029_RS09220	COG1289	transmembrane transporter activity
C3029_RS09225	COG3304	Inner membrane component domain
C3029_RS09230	COG0210	DNA helicase
C3029_RS09250	COG1832	CoA-binding protein
C3029_RS09265	COG1254	Belongs to the acylphosphatase family
C3029_RS09270	COG2920	part of a sulfur-relay system
C3029_RS09275	COG0670	Belongs to the BI1 family
C3029_RS09285	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
C3029_RS09290	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
C3029_RS09295	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
C3029_RS09300	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
C3029_RS09305	COG1999	signal sequence binding
C3029_RS09310	COG1773	rubredoxin
C3029_RS09315	COG1271	oxidase subunit
C3029_RS09320	COG1294	oxidase, subunit
C3029_RS09335	COG0489	protein tyrosine kinase activity
C3029_RS09335	COG3206	protein involved in exopolysaccharide biosynthesis
C3029_RS09340	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
C3029_RS09345	COG1596	polysaccharide export
C3029_RS09350	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3029_RS09375	COG1662	PFAM IS1 transposase
C3029_RS09380	COG1278	Cold shock
C3029_RS09385	COG1278	Cold shock
C3029_RS09400	COG0348	domain, Protein
C3029_RS09405	COG0784	Response regulator, receiver
C3029_RS09405	COG2198	Histidine kinase
C3029_RS09405	COG2205	protein histidine kinase activity
C3029_RS09410	COG1879	ABC-type sugar transport system periplasmic component
C3029_RS09415	COG0745	RESPONSE REGULATOR receiver
C3029_RS09420	COG3005	denitrification pathway
C3029_RS09425	COG0243	molybdopterin cofactor binding
C3029_RS09430	COG3381	protein complex oligomerization
C3029_RS09470	COG3729	General stress protein
C3029_RS09475	COG2233	PERMEase
C3029_RS09500	COG1335	isochorismatase
C3029_RS09510	COG1309	transcriptional regulator
C3029_RS09515	COG0506	proline dehydrogenase activity
C3029_RS09515	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
C3029_RS09515	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
C3029_RS09525	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3029_RS09540	COG2822	iron ion transport
C3029_RS09545	COG2837	iron assimilation
C3029_RS09555	COG1702	phosphate starvation-inducible protein PhoH
C3029_RS09560	COG3658	cytochrome
C3029_RS09565	COG1215	transferase activity, transferring glycosyl groups
C3029_RS09570	COG0726	polysaccharide deacetylase
C3029_RS09570	COG1649	PFAM Uncharacterised BCR, COG1649
C3029_RS09575	COG0457	Tetratricopeptide repeat
C3029_RS09580	COG3706	GGDEF domain
C3029_RS09585	COG2801	Transposase and inactivated derivatives
C3029_RS09615	COG3381	protein complex oligomerization
C3029_RS09625	COG1462	curli production assembly transport component CsgG
C3029_RS09640	COG2197	response regulator
C3029_RS09670	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
C3029_RS09675	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3029_RS09700	COG2943	transferase activity, transferring hexosyl groups
C3029_RS09705	COG5645	(Lipo)protein
C3029_RS09725	COG1560	Kdo2-lipid A biosynthetic process
C3029_RS09735	COG2353	YceI-like domain
C3029_RS09740	COG3038	cytochrome b561
C3029_RS09775	COG2999	glutathione oxidoreductase activity
C3029_RS09785	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3029_RS09795	COG0673	inositol 2-dehydrogenase activity
C3029_RS09800	COG0728	peptidoglycan biosynthetic process
C3029_RS09805	COG3418	PFAM FlgN family protein
C3029_RS09810	COG2747	anti-sigma28 factor FlgM
C3029_RS09815	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
C3029_RS09820	COG1815	bacterial-type flagellum-dependent cell motility
C3029_RS09825	COG1558	bacterial-type flagellum-dependent cell motility
C3029_RS09830	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
C3029_RS09835	COG1749	Flagellar hook protein flgE
C3029_RS09840	COG4787	bacterial-type flagellum-dependent cell motility
C3029_RS09845	COG4786	Flagellar basal body rod
C3029_RS09860	COG3951	Flagellar rod assembly protein muramidase FlgJ
C3029_RS09860	COG1705	Flagellar rod assembly protein muramidase FlgJ
C3029_RS09865	COG1256	bacterial-type flagellum assembly
C3029_RS09870	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
C3029_RS09875	COG1530	ribonuclease E activity
C3029_RS09885	COG0564	pseudouridine synthase activity
C3029_RS09890	COG0424	maF-like protein
C3029_RS09895	COG1399	metal-binding, possibly nucleic acid-binding protein
C3029_RS09915	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
C3029_RS09920	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS09930	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C3029_RS09935	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3029_RS09940	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
C3029_RS09950	COG0470	DNA polymerase III
C3029_RS09955	COG0084	hydrolase, TatD family'
C3029_RS09960	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS09960	COG1263	PTS System
C3029_RS09965	COG4773	Receptor
C3029_RS09970	COG0537	adenosine 5'-monophosphoramidase activity
C3029_RS09975	COG5633	Lipoprotein
C3029_RS09980	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
C3029_RS10000	COG1252	NADH dehydrogenase
C3029_RS10005	COG3134	Outer membrane lipoprotein
C3029_RS10010	COG1309	transcriptional regulator
C3029_RS10020	COG1388	LysM domain
C3029_RS10020	COG1376	ErfK ybiS ycfS ynhG family protein
C3029_RS10025	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
C3029_RS10030	COG4763	Acyl-transferase
C3029_RS10035	COG4591	ABC-type transport system involved in lipoprotein release permease component
C3029_RS10045	COG4591	ABC-type transport system involved in lipoprotein release permease component
C3029_RS10065	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
C3029_RS10070	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
C3029_RS10080	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
C3029_RS10085	COG1177	transmembrane transport
C3029_RS10110	COG2850	peptidyl-arginine hydroxylation
C3029_RS10115	COG2205	protein histidine kinase activity
C3029_RS10125	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
C3029_RS10145	COG1187	pseudouridine synthase activity
C3029_RS10150	COG0538	isocitrate dehydrogenase activity
C3029_RS10165	COG5562	phage envelope protein
C3029_RS10175	COG5562	phage envelope protein
C3029_RS10180	COG0789	Transcriptional regulator
C3029_RS10185	COG2200	EAL domain
C3029_RS10210	COG2200	EAL domain
C3029_RS10255	COG2894	cell division
C3029_RS10280	COG0179	Fumarylacetoacetate (FAA) hydrolase
C3029_RS10300	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
C3029_RS10305	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
C3029_RS10310	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
C3029_RS10325	COG2719	SpoVR family
C3029_RS10335	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3029_RS10345	COG1619	proteins homologs of microcin C7 resistance protein MccF
C3029_RS10355	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
C3029_RS10375	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
C3029_RS10375	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
C3029_RS10375	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS10380	COG1461	Dihydroxyacetone kinase
C3029_RS10385	COG2376	Dihydroxyacetone kinase
C3029_RS10390	COG3284	Transcriptional regulator
C3029_RS10395	COG3468	outer membrane autotransporter barrel domain protein
C3029_RS10405	COG0012	GTP binding
C3029_RS10420	COG0659	secondary active sulfate transmembrane transporter activity
C3029_RS10425	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
C3029_RS10450	COG2890	protein-(glutamine-N5) methyltransferase activity
C3029_RS10455	COG3094	Invasion gene expression up-regulator, SirB
C3029_RS10460	COG2912	Transglutaminase-like superfamily
C3029_RS10485	COG0387	Pfam Sodium calcium exchanger
C3029_RS10490	COG4572	Cation transport regulator
C3029_RS10495	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
C3029_RS10500	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
C3029_RS10505	COG4932	domain protein
C3029_RS10510	COG2197	response regulator
C3029_RS10515	COG3850	Histidine kinase
C3029_RS10525	COG2223	nitrite transmembrane transporter activity
C3029_RS10530	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
C3029_RS10535	COG1140	nitrate reductase beta subunit
C3029_RS10540	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
C3029_RS10545	COG2181	nitrate reductase activity
C3029_RS10570	COG0788	formyltetrahydrofolate deformylase activity
C3029_RS10580	COG1752	Esterase of the alpha-beta hydrolase superfamily
C3029_RS10585	COG0745	RESPONSE REGULATOR receiver
C3029_RS10590	COG1210	Utp--glucose-1-phosphate uridylyltransferase
C3029_RS10600	COG1435	thymidine kinase activity
C3029_RS10605	COG1454	alcohol dehydrogenase
C3029_RS10605	COG1012	belongs to the aldehyde dehydrogenase family
C3029_RS10610	COG2095	MarC family integral membrane protein
C3029_RS10615	COG4166	transmembrane transport
C3029_RS10620	COG0601	transmembrane transport
C3029_RS10625	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3029_RS10630	COG0444	Belongs to the ABC transporter superfamily
C3029_RS10635	COG4608	Belongs to the ABC transporter superfamily
C3029_RS10655	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C3029_RS10660	COG2350	Protein conserved in bacteria
C3029_RS10665	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
C3029_RS10670	COG1607	acyl-coa hydrolase
C3029_RS10685	COG3047	cAMP biosynthetic process
C3029_RS10690	COG3685	Protein conserved in bacteria
C3029_RS10695	COG3685	Protein conserved in bacteria
C3029_RS10700	COG3729	General stress protein
C3029_RS10715	COG0134	indole-3-glycerol-phosphate synthase activity
C3029_RS10715	COG0135	phosphoribosylanthranilate isomerase activity
C3029_RS10720	COG0512	Glutamine amidotransferase of anthranilate synthase
C3029_RS10720	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C3029_RS10725	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
C3029_RS10730	COG0613	PHP domain protein
C3029_RS10735	COG0009	L-threonylcarbamoyladenylate synthase
C3029_RS10740	COG4907	membrane protein (DUF2207)
C3029_RS10745	COG1662	PFAM IS1 transposase
C3029_RS10750	COG4907	membrane protein (DUF2207)
C3029_RS10755	COG1187	pseudouridine synthase activity
C3029_RS10760	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
C3029_RS10765	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS10775	COG0616	signal peptide processing
C3029_RS10790	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
C3029_RS10795	COG0583	DNA-binding transcription factor activity
C3029_RS10815	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
C3029_RS10825	COG0671	phosphoesterase, PA-phosphatase related
C3029_RS10830	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
C3029_RS10835	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
C3029_RS10845	COG0023	Translation Initiation Factor
C3029_RS10855	COG1349	DNA-binding transcription factor activity
C3029_RS10865	COG5001	Diguanylate cyclase
C3029_RS10880	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3029_RS10880	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3029_RS10885	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
C3029_RS10890	COG2852	Protein conserved in bacteria
C3029_RS10895	COG4172	Belongs to the ABC transporter superfamily
C3029_RS10900	COG4172	Belongs to the ABC transporter superfamily
C3029_RS10905	COG4171	peptide transport system, permease
C3029_RS10910	COG4168	peptide transport system, permease
C3029_RS10915	COG4166	transmembrane transport
C3029_RS10930	COG0531	amino acid
C3029_RS10935	COG0174	glutamine synthetase
C3029_RS10940	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
C3029_RS10945	COG1917	Cupin 2, conserved barrel domain protein
C3029_RS10945	COG1396	sequence-specific DNA binding
C3029_RS10950	COG1012	belongs to the aldehyde dehydrogenase family
C3029_RS10955	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3029_RS10960	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C3029_RS10965	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
C3029_RS10970	COG1842	Phage shock protein A
C3029_RS10980	COG1983	PspC domain protein
C3029_RS10990	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3029_RS10995	COG0366	Alpha amylase catalytic
C3029_RS11000	COG1653	transport
C3029_RS11005	COG1175	transmembrane transport
C3029_RS11010	COG0395	ABC-type sugar transport system, permease component
C3029_RS11015	COG1063	alcohol dehydrogenase
C3029_RS11020	COG1082	Xylose isomerase domain protein TIM barrel
C3029_RS11025	COG0673	inositol 2-dehydrogenase activity
C3029_RS11030	COG1554	hydrolase, family 65, central catalytic
C3029_RS11035	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3029_RS11040	COG3842	ATPase activity
C3029_RS11050	COG1609	Transcriptional regulator
C3029_RS11055	COG3106	COG3106 Predicted ATPase
C3029_RS11065	COG3283	Transcriptional regulator of aromatic amino acids metabolism
C3029_RS11070	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
C3029_RS11075	COG4948	Mandelate Racemase Muconate Lactonizing
C3029_RS11080	COG2866	Carboxypeptidase
C3029_RS11085	COG0702	epimerase
C3029_RS11090	COG1073	alpha beta
C3029_RS11095	COG0583	DNA-binding transcription factor activity
C3029_RS11105	COG4166	transmembrane transport
C3029_RS11110	COG0668	transmembrane transport
C3029_RS11115	COG3182	Iron-regulated membrane protein
C3029_RS11120	COG0589	response to stress
C3029_RS11130	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
C3029_RS11135	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
C3029_RS11145	COG1473	amidohydrolase
C3029_RS11150	COG1473	amidohydrolase
C3029_RS11155	COG0583	DNA-binding transcription factor activity
C3029_RS11165	COG2840	Smr protein MutS2
C3029_RS11170	COG3706	GGDEF domain
C3029_RS11185	COG0513	Belongs to the DEAD box helicase family
C3029_RS11195	COG0582	viral genome integration into host DNA
C3029_RS11215	COG3723	Recombinational DNA repair protein, rece pathway
C3029_RS11265	COG3772	lysozyme
C3029_RS11275	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3029_RS11280	COG1475	DNA binding
C3029_RS11300	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
C3029_RS11305	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
C3029_RS11315	COG0589	response to stress
C3029_RS11320	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C3029_RS11325	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3029_RS11325	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
C3029_RS11325	COG1013	pyruvate-flavodoxin oxidoreductase activity
C3029_RS11325	COG0674	pyruvate-flavodoxin oxidoreductase activity
C3029_RS11330	COG3042	response to heat
C3029_RS11335	COG3187	Heat shock protein
C3029_RS11340	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
C3029_RS11345	COG2911	Protein conserved in bacteria
C3029_RS11355	COG3784	Protein of unknown function (DUF1318)
C3029_RS11360	COG2207	Transcriptional regulator
C3029_RS11365	COG1012	belongs to the aldehyde dehydrogenase family
C3029_RS11370	COG3733	amine oxidase
C3029_RS11380	COG2801	Transposase and inactivated derivatives
C3029_RS11385	COG0667	Aldo Keto reductase
C3029_RS11395	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
C3029_RS11400	COG4589	Belongs to the CDS family
C3029_RS11405	COG2267	carboxylic ester hydrolase activity
C3029_RS11410	COG0671	phosphoesterase, PA-phosphatase related
C3029_RS11410	COG2453	phosphatase
C3029_RS11420	COG1643	Atp-dependent helicase
C3029_RS11425	COG1434	Gram-negative-bacterium-type cell wall biogenesis
C3029_RS11430	COG1012	belongs to the aldehyde dehydrogenase family
C3029_RS11435	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C3029_RS11440	COG1662	PFAM IS1 transposase
C3029_RS11445	COG3038	cytochrome b561
C3029_RS11460	COG0840	transmembrane signaling receptor activity
C3029_RS11465	COG0583	DNA-binding transcription factor activity
C3029_RS11470	COG5383	Protein conserved in bacteria
C3029_RS11485	COG2841	Protein conserved in bacteria
C3029_RS11490	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3029_RS11495	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
C3029_RS11500	COG1275	C4-dicarboxylate transporter malic acid transport protein
C3029_RS11505	COG0500	methyltransferase
C3029_RS11525	COG0675	Transposase, IS605 OrfB family
C3029_RS11530	COG3135	benzoate transporter
C3029_RS11535	COG1396	sequence-specific DNA binding
C3029_RS11540	COG0826	peptidase U32
C3029_RS11550	COG1724	mRNA binding
C3029_RS11555	COG1598	PFAM Uncharacterised protein family UPF0150
C3029_RS11560	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3029_RS11565	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
C3029_RS11570	COG3842	ATPase activity
C3029_RS11575	COG1176	ABC-type spermidine putrescine transport system, permease component I
C3029_RS11580	COG1177	transmembrane transport
C3029_RS11605	COG3238	Protein conserved in bacteria
C3029_RS11610	COG1247	-acetyltransferase
C3029_RS11615	COG2130	NADP-dependent
C3029_RS11620	COG1802	Transcriptional regulator
C3029_RS11625	COG4772	TonB-dependent receptor
C3029_RS11630	COG3391	amine dehydrogenase activity
C3029_RS11635	COG1113	amino acid transport
C3029_RS11640	COG0625	glutathione transferase activity
C3029_RS11655	COG3209	COG3209 Rhs family protein
C3029_RS11670	COG5433	transposase activity
C3029_RS11675	COG5433	transposase activity
C3029_RS11685	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3029_RS11690	COG2162	N-hydroxyarylamine O-acetyltransferase activity
C3029_RS11700	COG2181	nitrate reductase activity
C3029_RS11705	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
C3029_RS11710	COG1140	nitrate reductase beta subunit
C3029_RS11715	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
C3029_RS11720	COG2223	nitrite transmembrane transporter activity
C3029_RS11730	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C3029_RS11735	COG0697	spore germination
C3029_RS11740	COG0243	molybdopterin cofactor binding
C3029_RS11740	COG3383	formate dehydrogenase (NAD+) activity
C3029_RS11745	COG3383	formate dehydrogenase (NAD+) activity
C3029_RS11745	COG0243	molybdopterin cofactor binding
C3029_RS11750	COG0437	4 iron, 4 sulfur cluster binding
C3029_RS11755	COG2864	formate dehydrogenase
C3029_RS11760	COG3093	addiction module antidote protein HigA
C3029_RS11765	COG1064	alcohol dehydrogenase
C3029_RS11785	COG1764	response to oxidative stress
C3029_RS11790	COG4608	Belongs to the ABC transporter superfamily
C3029_RS11795	COG0444	Belongs to the ABC transporter superfamily
C3029_RS11800	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3029_RS11805	COG0601	transmembrane transport
C3029_RS11810	COG0747	negative chemotaxis
C3029_RS11815	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
C3029_RS11820	COG2200	EAL domain
C3029_RS11820	COG2199	diguanylate cyclase activity
C3029_RS11820	COG2202	Pas domain
C3029_RS11830	COG1649	PFAM Uncharacterised BCR, COG1649
C3029_RS11835	COG0531	amino acid
C3029_RS11840	COG0076	glutamate decarboxylase activity
C3029_RS11850	COG0612	Peptidase, M16
C3029_RS11855	COG4771	TonB-dependent receptor
C3029_RS11860	COG4178	(ABC) transporter
C3029_RS11865	COG0641	radical SAM
C3029_RS11870	COG3119	arylsulfatase activity
C3029_RS11875	COG2207	Transcriptional regulator
C3029_RS11885	COG0243	molybdopterin cofactor binding
C3029_RS11890	COG3539	Fimbrial protein
C3029_RS11895	COG3539	Fimbrial protein
C3029_RS11900	COG3539	Fimbrial protein
C3029_RS11905	COG3188	usher protein
C3029_RS11910	COG3188	usher protein
C3029_RS11925	COG3539	Fimbrial protein
C3029_RS11930	COG3550	peptidyl-serine autophosphorylation
C3029_RS11935	COG1396	sequence-specific DNA binding
C3029_RS11970	COG3781	membrane
C3029_RS11980	COG2199	diguanylate cyclase activity
C3029_RS11990	COG2066	Belongs to the glutaminase family
C3029_RS11995	COG1012	belongs to the aldehyde dehydrogenase family
C3029_RS12000	COG0583	DNA-binding transcription factor activity
C3029_RS12030	COG1846	Transcriptional regulator
C3029_RS12035	COG4977	sequence-specific DNA binding
C3029_RS12045	COG0697	spore germination
C3029_RS12050	COG2814	Major facilitator Superfamily
C3029_RS12060	COG3706	GGDEF domain
C3029_RS12065	COG3111	PFAM Bacterial OB fold (BOF) protein
C3029_RS12070	COG1546	Belongs to the CinA family
C3029_RS12075	COG0339	signal peptide processing
C3029_RS12080	COG4221	oxidoreductase activity
C3029_RS12085	COG1802	Transcriptional regulator
C3029_RS12095	COG0246	Mannitol dehydrogenase
C3029_RS12100	COG0477	Major facilitator Superfamily
C3029_RS12115	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
C3029_RS12145	COG2801	Transposase and inactivated derivatives
C3029_RS12160	COG1403	HNH endonuclease
C3029_RS12160	COG1403	HNH endonuclease
C3029_RS12185	COG1846	Transcriptional regulator
C3029_RS12200	COG1396	sequence-specific DNA binding
C3029_RS12230	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C3029_RS12245	COG1063	alcohol dehydrogenase
C3029_RS12250	COG4948	Mandelate Racemase Muconate Lactonizing
C3029_RS12265	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3029_RS12280	COG0243	molybdopterin cofactor binding
C3029_RS12285	COG0243	molybdopterin cofactor binding
C3029_RS12290	COG0437	4 iron, 4 sulfur cluster binding
C3029_RS12295	COG3302	dmso reductase anchor subunit
C3029_RS12300	COG3381	protein complex oligomerization
C3029_RS12310	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
C3029_RS12315	COG1940	carbohydrate kinase activity
C3029_RS12320	COG0583	DNA-binding transcription factor activity
C3029_RS12325	COG2814	Major facilitator Superfamily
C3029_RS12340	COG3591	Belongs to the peptidase S1B family
C3029_RS12355	COG0628	permease
C3029_RS12360	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
C3029_RS12365	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
C3029_RS12375	COG0531	amino acid
C3029_RS12385	COG3136	membrane protein required for alginate biosynthesis
C3029_RS12390	COG0745	RESPONSE REGULATOR receiver
C3029_RS12395	COG2205	protein histidine kinase activity
C3029_RS12405	COG0114	fumarate hydratase activity
C3029_RS12410	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
C3029_RS12410	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
C3029_RS12415	COG1482	cell wall glycoprotein biosynthetic process
C3029_RS12420	COG5339	Protein conserved in bacteria
C3029_RS12435	COG3250	beta-galactosidase activity
C3029_RS12440	COG1309	transcriptional regulator
C3029_RS12445	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS12450	COG1609	Transcriptional regulator
C3029_RS12455	COG1263	PTS System
C3029_RS12455	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS12460	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
C3029_RS12470	COG0673	inositol 2-dehydrogenase activity
C3029_RS12510	COG4659	FMN binding
C3029_RS12520	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
C3029_RS12530	COG3104	oligopeptide transport
C3029_RS12535	COG0625	glutathione transferase activity
C3029_RS12540	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
C3029_RS12555	COG3895	Periplasmic Protein
C3029_RS12565	COG3133	Outer membrane lipoprotein
C3029_RS12580	COG1566	PFAM secretion protein HlyD family protein
C3029_RS12585	COG1289	transmembrane transporter activity
C3029_RS12590	COG2032	superoxide dismutase activity
C3029_RS12595	COG4989	oxidoreductase activity
C3029_RS12600	COG3313	Fe-S protein
C3029_RS12605	COG1309	transcriptional regulator
C3029_RS12610	COG1902	pentaerythritol trinitrate reductase activity
C3029_RS12615	COG0346	lactoylglutathione lyase activity
C3029_RS12625	COG1201	RNA secondary structure unwinding
C3029_RS12630	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
C3029_RS12635	COG0791	NLP P60 protein
C3029_RS12640	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
C3029_RS12645	COG2814	Major facilitator Superfamily
C3029_RS12660	COG0583	DNA-binding transcription factor activity
C3029_RS12665	COG2814	Major facilitator Superfamily
C3029_RS12670	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
C3029_RS12675	COG0307	riboflavin synthase, alpha
C3029_RS12685	COG3468	outer membrane autotransporter barrel domain protein
C3029_RS12705	COG4529	Protein conserved in bacteria
C3029_RS12715	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
C3029_RS12720	COG0437	4 iron, 4 sulfur cluster binding
C3029_RS12730	COG2414	aldehyde ferredoxin oxidoreductase
C3029_RS12735	COG0437	4 iron, 4 sulfur cluster binding
C3029_RS12745	COG0469	pyruvate kinase activity
C3029_RS12750	COG4238	major outer membrane lipoprotein
C3029_RS12755	COG1376	ErfK ybiS ycfS ynhG family protein
C3029_RS12770	COG0719	Fe-S assembly protein
C3029_RS12775	COG0396	ATPase activity
C3029_RS12780	COG0719	Fe-S assembly protein
C3029_RS12785	COG0316	Belongs to the HesB IscA family
C3029_RS12795	COG2050	protein possibly involved in aromatic compounds catabolism
C3029_RS12800	COG0247	lactate metabolic process
C3029_RS12800	COG0277	FAD linked oxidase domain protein
C3029_RS12805	COG0628	permease
C3029_RS12825	COG2271	Major facilitator Superfamily
C3029_RS12840	COG4670	ketone body catabolic process
C3029_RS12845	COG1960	acyl-CoA dehydrogenase activity
C3029_RS12850	COG1917	Cupin 2, conserved barrel domain protein
C3029_RS12850	COG2207	Transcriptional regulator
C3029_RS12860	COG2086	electron transfer activity
C3029_RS12865	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
C3029_RS12870	COG0644	oxidoreductase
C3029_RS12875	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
C3029_RS12880	COG0318	PFAM AMP-dependent synthetase and ligase
C3029_RS12885	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
C3029_RS12885	COG0574	Belongs to the PEP-utilizing enzyme family
C3029_RS12900	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C3029_RS12905	COG4256	Hemin uptake protein
C3029_RS12920	COG0791	NLP P60 protein
C3029_RS12930	COG0386	Belongs to the glutathione peroxidase family
C3029_RS12945	COG0072	phenylalanine-tRNA ligase activity
C3029_RS12945	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3029_RS12990	COG3137	Salt-induced outer membrane protein
C3029_RS12995	COG1105	Belongs to the carbohydrate kinase PfkB family
C3029_RS13005	COG3001	Fructosamine kinase
C3029_RS13015	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3029_RS13020	COG1988	membrane-bound metal-dependent
C3029_RS13025	COG1823	symporter activity
C3029_RS13040	COG0753	catalase activity
C3029_RS13050	COG0753	catalase activity
C3029_RS13060	COG1486	melibiose metabolic process
C3029_RS13065	COG1917	Cupin 2, conserved barrel domain protein
C3029_RS13065	COG2169	Transcriptional regulator
C3029_RS13070	COG1447	Phosphotransferase system cellobiose-specific component IIA
C3029_RS13075	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
C3029_RS13080	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
C3029_RS13085	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3029_RS13100	COG0322	excinuclease ABC activity
C3029_RS13110	COG3678	ATP-independent chaperone mediated protein folding
C3029_RS13140	COG0708	Exodeoxyribonuclease III
C3029_RS13145	COG0398	Pfam SNARE associated Golgi protein
C3029_RS13155	COG0398	Pfam SNARE associated Golgi protein
C3029_RS13160	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3029_RS13165	COG4134	Bacterial extracellular solute-binding protein
C3029_RS13170	COG4135	transport system, permease component
C3029_RS13175	COG4136	ATPase activity
C3029_RS13180	COG2897	thiosulfate sulfurtransferase activity
C3029_RS13185	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
C3029_RS13190	COG0494	nUDIX hydrolase
C3029_RS13200	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C3029_RS13210	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
C3029_RS13225	COG0778	Nitroreductase
C3029_RS13235	COG0616	signal peptide processing
C3029_RS13240	COG0252	asparaginase activity
C3029_RS13245	COG1335	isochorismatase
C3029_RS13250	COG2814	Major facilitator Superfamily
C3029_RS13255	COG1349	DNA-binding transcription factor activity
C3029_RS13260	COG0667	Aldo Keto reductase
C3029_RS13265	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3029_RS13270	COG0191	fructose-bisphosphate aldolase activity
C3029_RS13275	COG1063	alcohol dehydrogenase
C3029_RS13280	COG2271	Major facilitator Superfamily
C3029_RS13285	COG1063	alcohol dehydrogenase
C3029_RS13290	COG3139	Protein of unknown function (DUF1315)
C3029_RS13300	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C3029_RS13305	COG0676	glucose-6-phosphate 1-epimerase activity
C3029_RS13310	COG0656	L-ascorbic acid biosynthetic process
C3029_RS13315	COG3713	MltA-interacting MipA family protein
C3029_RS13320	COG2766	serine protein kinase
C3029_RS13330	COG2199	diguanylate cyclase activity
C3029_RS13335	COG2199	diguanylate cyclase activity
C3029_RS13340	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
C3029_RS13355	COG2207	Transcriptional regulator
C3029_RS13360	COG2807	transmembrane transport
C3029_RS13365	COG3189	MarR family transcriptional regulator
C3029_RS13370	COG3042	response to heat
C3029_RS13375	COG2203	Gaf domain
C3029_RS13375	COG2199	diguanylate cyclase activity
C3029_RS13385	COG2261	transglycosylase associated protein
C3029_RS13395	COG3615	Tellurite resistance protein tehB
C3029_RS13400	COG3385	transposase activity
C3029_RS13405	COG3615	Tellurite resistance protein tehB
C3029_RS13415	COG0583	DNA-binding transcription factor activity
C3029_RS13420	COG0473	3-isopropylmalate dehydrogenase activity
C3029_RS13425	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3029_RS13430	COG4638	Rieske (2fe-2S)
C3029_RS13435	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3029_RS13440	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
C3029_RS13445	COG0318	PFAM AMP-dependent synthetase and ligase
C3029_RS13450	COG3065	identical protein binding
C3029_RS13455	COG1214	PFAM Peptidase M22, glycoprotease
C3029_RS13460	COG1199	ATP-dependent helicase activity
C3029_RS13465	COG0251	oxidation-reduction process
C3029_RS13485	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
C3029_RS13495	COG1760	l-serine dehydratase
C3029_RS13500	COG2200	EAL domain
C3029_RS13505	COG1253	flavin adenine dinucleotide binding
C3029_RS13515	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS13515	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS13520	COG3715	PTS system
C3029_RS13525	COG3716	PTS system mannose fructose sorbose family IID component
C3029_RS13545	COG2226	methyltransferase
C3029_RS13580	COG1414	Transcriptional regulator
C3029_RS13585	COG2814	Major facilitator Superfamily
C3029_RS13595	COG0793	Belongs to the peptidase S41A family
C3029_RS13605	COG1956	GAF domain-containing protein
C3029_RS13610	COG2995	paraquat-inducible protein a
C3029_RS13615	COG3008	intermembrane lipid transfer
C3029_RS13635	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C3029_RS13650	COG1276	copper resistance
C3029_RS13655	COG2372	response to copper ion
C3029_RS13665	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
C3029_RS13670	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C3029_RS13675	COG1770	oligopeptidase
C3029_RS13680	COG2979	Protein of unknown function (DUF533)
C3029_RS13695	COG3141	response to X-ray
C3029_RS13705	COG0800	Aldolase
C3029_RS13710	COG0129	dihydroxy-acid dehydratase activity
C3029_RS13715	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
C3029_RS13725	COG1737	Transcriptional regulator
C3029_RS13730	COG0469	pyruvate kinase activity
C3029_RS13735	COG1560	Kdo2-lipid A biosynthetic process
C3029_RS13740	COG0739	heme binding
C3029_RS13745	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
C3029_RS13755	COG1108	ABC-type Mn2 Zn2 transport systems permease components
C3029_RS13780	COG0217	transcriptional regulatory protein
C3029_RS13785	COG0494	nUDIX hydrolase
C3029_RS13795	COG1335	isochorismatase
C3029_RS13800	COG1801	Protein of unknown function DUF72
C3029_RS13805	COG3788	relative of glutathione S-transferase, MAPEG superfamily
C3029_RS13820	COG0243	molybdopterin cofactor binding
C3029_RS13825	COG3005	denitrification pathway
C3029_RS13835	COG3102	Protein conserved in bacteria
C3029_RS13845	COG3755	Protein conserved in bacteria
C3029_RS13855	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
C3029_RS13860	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
C3029_RS13865	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
C3029_RS13870	COG0745	RESPONSE REGULATOR receiver
C3029_RS13880	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
C3029_RS13885	COG0840	transmembrane signaling receptor activity
C3029_RS13890	COG0840	transmembrane signaling receptor activity
C3029_RS13895	COG0835	chemotaxis
C3029_RS13900	COG0643	Histidine kinase
C3029_RS13900	COG2198	Histidine kinase
C3029_RS13905	COG1360	Flagellar Motor Protein
C3029_RS13910	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
C3029_RS13925	COG0589	response to stress
C3029_RS13935	COG1877	trehalose-phosphatase activity
C3029_RS13940	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3029_RS13945	COG1129	ABC transporter
C3029_RS13950	COG1879	ABC-type sugar transport system periplasmic component
C3029_RS13955	COG1528	Iron-storage protein
C3029_RS13975	COG1528	Iron-storage protein
C3029_RS13985	COG0814	amino acid
C3029_RS13990	COG3318	Belongs to the UPF0149 family
C3029_RS13990	COG3012	SEC-C Motif Domain Protein
C3029_RS14020	COG2197	response regulator
C3029_RS14025	COG1662	PFAM IS1 transposase
C3029_RS14035	COG2205	protein histidine kinase activity
C3029_RS14040	COG0745	RESPONSE REGULATOR receiver
C3029_RS14045	COG2351	hydroxyisourate hydrolase activity
C3029_RS14060	COG3443	Belongs to the bacterial solute-binding protein 9 family
C3029_RS14065	COG3038	cytochrome b561
C3029_RS14090	COG1470	cell adhesion involved in biofilm formation
C3029_RS14090	COG1388	LysM domain
C3029_RS14100	COG0477	Major facilitator Superfamily
C3029_RS14105	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
C3029_RS14110	COG0217	transcriptional regulatory protein
C3029_RS14120	COG0534	Mate efflux family protein
C3029_RS14130	COG0583	DNA-binding transcription factor activity
C3029_RS14135	COG0583	DNA-binding transcription factor activity
C3029_RS14145	COG1376	ErfK ybiS ycfS ynhG family protein
C3029_RS14160	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
C3029_RS14190	COG4372	Transposase
C3029_RS14205	COG1289	transmembrane transporter activity
C3029_RS14215	COG1686	Belongs to the peptidase S11 family
C3029_RS14220	COG2925	Exonuclease
C3029_RS14225	COG0425	Belongs to the sulfur carrier protein TusA family
C3029_RS14230	COG2391	methyltransferase activity
C3029_RS14235	COG0531	amino acid
C3029_RS14240	COG0583	DNA-binding transcription factor activity
C3029_RS14245	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3029_RS14255	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
C3029_RS14265	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
C3029_RS14265	COG0131	Imidazoleglycerol-phosphate dehydratase
C3029_RS14270	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
C3029_RS14285	COG0140	phosphoribosyl-ATP diphosphatase activity
C3029_RS14285	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
C3029_RS14290	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
C3029_RS14295	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
C3029_RS14300	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
C3029_RS14305	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
C3029_RS14315	COG1662	PFAM IS1 transposase
C3029_RS14355	COG2244	polysaccharide biosynthetic process
C3029_RS14365	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
C3029_RS14375	COG1088	dTDP-glucose 4,6-dehydratase activity
C3029_RS14380	COG1210	Utp--glucose-1-phosphate uridylyltransferase
C3029_RS14390	COG0438	transferase activity, transferring glycosyl groups
C3029_RS14395	COG2327	Polysaccharide pyruvyl transferase
C3029_RS14400	COG2244	polysaccharide biosynthetic process
C3029_RS14405	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
C3029_RS14410	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
C3029_RS14415	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
C3029_RS14415	COG0662	Cupin 2, conserved barrel domain protein
C3029_RS14420	COG0297	glycogen (starch) synthase activity
C3029_RS14425	COG1051	belongs to the nudix hydrolase family
C3029_RS14430	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3029_RS14435	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
C3029_RS14440	COG0110	maltose O-acetyltransferase activity
C3029_RS14445	COG1216	Glycosyl transferase, family 2
C3029_RS14455	COG0438	transferase activity, transferring glycosyl groups
C3029_RS14460	COG1045	serine acetyltransferase
C3029_RS14465	COG0463	Glycosyl transferase, family 2
C3029_RS14470	COG0489	protein tyrosine kinase activity
C3029_RS14470	COG3206	protein involved in exopolysaccharide biosynthesis
C3029_RS14475	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
C3029_RS14480	COG1596	polysaccharide export
C3029_RS14485	COG1253	flavin adenine dinucleotide binding
C3029_RS14490	COG2982	Protein involved in outer membrane biogenesis
C3029_RS14500	COG0572	uridine kinase
C3029_RS14505	COG5002	protein histidine kinase activity
C3029_RS14505	COG3447	MASE1 domain protein
C3029_RS14505	COG5001	Diguanylate cyclase
C3029_RS14510	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
C3029_RS14515	COG0443	Heat shock 70 kDa protein
C3029_RS14520	COG4248	protein with protein kinase and helix-hairpin-helix DNA-binding domains
C3029_RS14525	COG0631	protein serine/threonine phosphatase activity
C3029_RS14530	COG4245	von Willebrand factor, type A
C3029_RS14555	COG2205	protein histidine kinase activity
C3029_RS14560	COG0745	RESPONSE REGULATOR receiver
C3029_RS14570	COG0826	peptidase U32
C3029_RS14605	COG1063	alcohol dehydrogenase
C3029_RS14610	COG3775	system Galactitol-specific IIC component
C3029_RS14615	COG3414	Phosphotransferase system galactitol-specific IIB component
C3029_RS14620	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS14640	COG1830	Aldolase
C3029_RS14645	COG2211	Major facilitator Superfamily
C3029_RS14650	COG1397	ADP-ribosylglycohydrolase
C3029_RS14655	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3029_RS14660	COG2188	Transcriptional regulator
C3029_RS14665	COG3757	hydrolase, family 25
C3029_RS14670	COG0351	phosphomethylpyrimidine kinase
C3029_RS14740	COG0489	protein tyrosine kinase activity
C3029_RS14750	COG3831	ATPase activity
C3029_RS14755	COG3831	ATPase activity
C3029_RS14765	COG0714	Associated with various cellular activities
C3029_RS14770	COG2425	protein containing a von Willebrand factor type A (vWA) domain
C3029_RS14775	COG3552	Protein containing von Willebrand factor type A (VWA) domain
C3029_RS14780	COG4715	Zinc finger, swim domain protein
C3029_RS14785	COG4808	Protein conserved in bacteria
C3029_RS14790	COG4807	Protein conserved in bacteria
C3029_RS14795	COG3279	Response regulator of the LytR AlgR family
C3029_RS14800	COG3275	phosphorelay sensor kinase activity
C3029_RS14805	COG0789	Transcriptional regulator
C3029_RS14815	COG1174	glycine betaine transport
C3029_RS14820	COG1125	glycine betaine transport
C3029_RS14825	COG1174	glycine betaine transport
C3029_RS14830	COG1732	Glycine betaine
C3029_RS14835	COG1472	Belongs to the glycosyl hydrolase 3 family
C3029_RS14840	COG0277	FAD linked oxidase domain protein
C3029_RS14845	COG1686	Belongs to the peptidase S11 family
C3029_RS14855	COG0586	Pfam SNARE associated Golgi protein
C3029_RS14860	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS14875	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C3029_RS14885	COG1346	cytolysis
C3029_RS14895	COG2949	membrane
C3029_RS14905	COG0493	'glutamate synthase
C3029_RS14910	COG0167	dihydroorotate dehydrogenase activity
C3029_RS14910	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
C3029_RS14915	COG4211	Belongs to the binding-protein-dependent transport system permease family
C3029_RS14920	COG1129	ABC transporter
C3029_RS14930	COG1609	Transcriptional regulator
C3029_RS14940	COG2311	Membrane
C3029_RS14960	COG4771	TonB-dependent receptor
C3029_RS14965	COG0833	amino acid
C3029_RS14970	COG0583	DNA-binding transcription factor activity
C3029_RS14975	COG2855	membrane
C3029_RS14985	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3029_RS14985	COG1522	sequence-specific DNA binding
C3029_RS14990	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3029_RS15000	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3029_RS15005	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3029_RS15010	COG2313	pseudouridylate synthase activity
C3029_RS15015	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3029_RS15020	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
C3029_RS15020	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS15020	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS15025	COG1105	Belongs to the carbohydrate kinase PfkB family
C3029_RS15030	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS15030	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS15035	COG2814	Major facilitator Superfamily
C3029_RS15050	COG0246	Mannitol dehydrogenase
C3029_RS15055	COG0523	cobalamin synthesis protein
C3029_RS15060	COG0671	phosphoesterase, PA-phosphatase related
C3029_RS15065	COG0791	NLP P60 protein
C3029_RS15070	COG2200	EAL domain
C3029_RS15075	COG4166	transmembrane transport
C3029_RS15080	COG4174	ABC transporter (Permease)
C3029_RS15085	COG4239	(ABC) transporter, permease
C3029_RS15090	COG4172	Belongs to the ABC transporter superfamily
C3029_RS15100	COG2814	Major facilitator Superfamily
C3029_RS15105	COG1187	pseudouridine synthase activity
C3029_RS15110	COG1061	Type III restriction enzyme res subunit
C3029_RS15130	COG3083	sulfuric ester hydrolase activity
C3029_RS15140	COG3468	outer membrane autotransporter barrel domain protein
C3029_RS15150	COG2197	response regulator
C3029_RS15155	COG3088	subunit of a heme lyase
C3029_RS15155	COG4235	cytochrome complex assembly
C3029_RS15160	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3029_RS15165	COG1138	Cytochrome C-type biogenesis protein
C3029_RS15175	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3029_RS15180	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3029_RS15185	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3029_RS15190	COG4133	protoheme IX ABC transporter activity
C3029_RS15195	COG3005	denitrification pathway
C3029_RS15200	COG3043	anaerobic respiration
C3029_RS15205	COG0348	domain, Protein
C3029_RS15210	COG0437	4 iron, 4 sulfur cluster binding
C3029_RS15220	COG3062	negative regulation of establishment of protein localization
C3029_RS15225	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS15225	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS15245	COG4615	Cyclic peptide transporter
C3029_RS15250	COG3145	DNA-N1-methyladenine dioxygenase activity
C3029_RS15255	COG2169	Transcriptional regulator
C3029_RS15255	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
C3029_RS15260	COG1477	protein flavinylation
C3029_RS15265	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C3029_RS15270	COG1662	PFAM IS1 transposase
C3029_RS15275	COG0784	Response regulator, receiver
C3029_RS15275	COG2205	protein histidine kinase activity
C3029_RS15280	COG3852	Histidine kinase
C3029_RS15285	COG2204	response regulator
C3029_RS15290	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
C3029_RS15295	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C3029_RS15300	COG2031	fatty acid transporter
C3029_RS15305	COG0183	Belongs to the thiolase family
C3029_RS15310	COG4676	Protein conserved in bacteria
C3029_RS15315	COG5445	Predicted secreted protein (DUF2300)
C3029_RS15320	COG2373	Large extracellular alpha-helical protein
C3029_RS15325	COG3234	Protein of unknown function (DUF1175)
C3029_RS15330	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
C3029_RS15335	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
C3029_RS15345	COG3468	outer membrane autotransporter barrel domain protein
C3029_RS15355	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3029_RS15360	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3029_RS15365	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3029_RS15370	COG3642	lipopolysaccharide core region biosynthetic process
C3029_RS15375	COG0583	DNA-binding transcription factor activity
C3029_RS15380	COG0584	glycerophosphoryl diester phosphodiesterase
C3029_RS15385	COG2271	Major facilitator Superfamily
C3029_RS15390	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
C3029_RS15400	COG0247	lactate metabolic process
C3029_RS15405	COG5464	transposase or invertase
C3029_RS15415	COG2271	Major facilitator Superfamily
C3029_RS15425	COG1414	Transcriptional regulator
C3029_RS15490	COG0318	PFAM AMP-dependent synthetase and ligase
C3029_RS15500	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
C3029_RS15515	COG1169	isochorismate synthase
C3029_RS15520	COG4575	ribosome binding
C3029_RS15525	COG2153	protein acetylation
C3029_RS15535	COG5160	protein modification by small protein removal
C3029_RS15540	COG2234	aminopeptidase activity
C3029_RS15555	COG2801	Transposase and inactivated derivatives
C3029_RS15565	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3029_RS15570	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
C3029_RS15580	COG0839	Belongs to the complex I subunit 6 family
C3029_RS15595	COG1034	ATP synthesis coupled electron transport
C3029_RS15600	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
C3029_RS15605	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
C3029_RS15625	COG0583	DNA-binding transcription factor activity
C3029_RS15630	COG0436	Aminotransferase
C3029_RS15640	COG0471	metal ion transport
C3029_RS15640	COG0490	domain, Protein
C3029_RS15645	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3029_RS15665	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
C3029_RS15670	COG0857	belongs to the CobB CobQ family
C3029_RS15670	COG0280	phosphate acetyltransferase
C3029_RS15675	COG1288	antiporter activity
C3029_RS15680	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
C3029_RS15685	COG0622	Phosphoesterase
C3029_RS15690	COG0625	glutathione transferase activity
C3029_RS15695	COG0625	glutathione transferase activity
C3029_RS15700	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
C3029_RS15705	COG1090	epimerase
C3029_RS15710	COG5464	transposase or invertase
C3029_RS15715	COG4598	ABC transporter
C3029_RS15720	COG4160	amino acid transport
C3029_RS15725	COG4215	(ABC) transporter
C3029_RS15730	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3029_RS15735	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3029_RS15740	COG0163	prenyltransferase activity
C3029_RS15745	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
C3029_RS15750	COG1286	toxin biosynthetic process
C3029_RS15755	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
C3029_RS15760	COG0285	dihydrofolate synthase activity
C3029_RS15770	COG0586	Pfam SNARE associated Golgi protein
C3029_RS15780	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
C3029_RS15795	COG2814	Major facilitator Superfamily
C3029_RS15800	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C3029_RS15815	COG3101	peptidyl-lysine hydroxylation
C3029_RS15820	COG0730	response to heat
C3029_RS15850	COG3539	Fimbrial protein
C3029_RS15855	COG3539	Fimbrial protein
C3029_RS15860	COG3539	Fimbrial protein
C3029_RS15865	COG3121	Chaperone
C3029_RS15870	COG3188	usher protein
C3029_RS15875	COG3539	Fimbrial protein
C3029_RS15880	COG2062	phosphohistidine phosphatase, SixA
C3029_RS15895	COG3691	Protein conserved in bacteria
C3029_RS15900	COG2067	long-chain fatty acid transport protein
C3029_RS15920	COG2853	Lipoprotein
C3029_RS15925	COG2116	formate transmembrane transporter activity
C3029_RS15935	COG0583	DNA-binding transcription factor activity
C3029_RS15940	COG2610	gluconate transmembrane transporter activity
C3029_RS15950	COG0477	Major facilitator Superfamily
C3029_RS15955	COG1566	PFAM secretion protein HlyD family protein
C3029_RS15960	COG2197	response regulator
C3029_RS15965	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3029_RS15965	COG2205	protein histidine kinase activity
C3029_RS15965	COG0784	Response regulator, receiver
C3029_RS15965	COG2198	Histidine kinase
C3029_RS15970	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3029_RS15975	COG0679	Auxin Efflux Carrier
C3029_RS15980	COG0028	Belongs to the TPP enzyme family
C3029_RS16010	COG1560	Kdo2-lipid A biosynthetic process
C3029_RS16015	COG0436	Aminotransferase
C3029_RS16020	COG3275	phosphorelay sensor kinase activity
C3029_RS16025	COG3279	Response regulator of the LytR AlgR family
C3029_RS16030	COG2207	Transcriptional regulator
C3029_RS16035	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS16035	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS16035	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
C3029_RS16040	COG1363	Peptidase, m42
C3029_RS16045	COG0006	proline dipeptidase activity
C3029_RS16050	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS16055	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3029_RS16085	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3029_RS16090	COG2199	diguanylate cyclase activity
C3029_RS16090	COG2200	EAL domain
C3029_RS16105	COG3415	Transposase
C3029_RS16110	COG3415	Transposase
C3029_RS16145	COG0583	DNA-binding transcription factor activity
C3029_RS16150	COG0385	Bile acid
C3029_RS16155	COG3530	Putative quorum-sensing-regulated virulence factor
C3029_RS16175	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3029_RS16180	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS16185	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
C3029_RS16190	COG2190	(PTS) system
C3029_RS16205	COG3831	ATPase activity
C3029_RS16205	COG4884	unkown
C3029_RS16210	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3029_RS16215	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
C3029_RS16220	COG4208	sulfate ABC transporter
C3029_RS16225	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
C3029_RS16230	COG4150	thiosulfate binding
C3029_RS16235	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS16240	COG1737	Transcriptional regulator
C3029_RS16250	COG1263	PTS System
C3029_RS16250	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS16255	COG2837	iron assimilation
C3029_RS16280	COG0860	N-Acetylmuramoyl-L-alanine amidase
C3029_RS16290	COG2207	Transcriptional regulator
C3029_RS16295	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
C3029_RS16300	COG4816	utilization protein
C3029_RS16310	COG4303	Ethanolamine ammonia lyase large subunit
C3029_RS16315	COG4819	ethanolamine utilization protein
C3029_RS16320	COG3192	ethanolamine utilization protein
C3029_RS16325	COG1454	alcohol dehydrogenase
C3029_RS16330	COG4820	ethanolamine utilization protein (EutJ)
C3029_RS16335	COG1012	belongs to the aldehyde dehydrogenase family
C3029_RS16340	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
C3029_RS16345	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
C3029_RS16350	COG0280	phosphate acetyltransferase
C3029_RS16355	COG4812	Cobalamin adenosyltransferase
C3029_RS16360	COG4766	ethanolamine catabolic process
C3029_RS16365	COG4917	ethanolamine utilization protein
C3029_RS16370	COG4810	utilization protein
C3029_RS16375	COG0280	phosphate acetyltransferase
C3029_RS16375	COG0281	malic enzyme
C3029_RS16380	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
C3029_RS16385	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
C3029_RS16390	COG5342	invasion associated locus B
C3029_RS16400	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS16400	COG0493	'glutamate synthase
C3029_RS16405	COG3850	Histidine kinase
C3029_RS16410	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3029_RS16420	COG1393	Belongs to the ArsC family
C3029_RS16435	COG0400	carboxylic ester hydrolase activity
C3029_RS16440	COG1444	tRNA N-acetyltransferase activity
C3029_RS16445	COG2321	neutral zinc metallopeptidase
C3029_RS16460	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
C3029_RS16470	COG2716	regulation of RNA biosynthetic process
C3029_RS16475	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
C3029_RS16480	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS16485	COG0651	ATP synthesis coupled electron transport
C3029_RS16495	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
C3029_RS16500	COG4237	Hydrogenase 4 membrane
C3029_RS16505	COG0651	ATP synthesis coupled electron transport
C3029_RS16510	COG3261	NADH dehydrogenase
C3029_RS16510	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
C3029_RS16515	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3029_RS16520	COG3260	NADH ubiquinone oxidoreductase 20
C3029_RS16530	COG3604	Transcriptional regulator
C3029_RS16535	COG2116	formate transmembrane transporter activity
C3029_RS16540	COG0628	permease
C3029_RS16545	COG4783	chaperone-mediated protein folding
C3029_RS16550	COG1393	Belongs to the ArsC family
C3029_RS16560	COG2233	PERMEase
C3029_RS16575	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
C3029_RS16580	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
C3029_RS16585	COG0248	Ppx GppA phosphatase
C3029_RS16590	COG2200	EAL domain
C3029_RS16605	COG3133	Outer membrane lipoprotein
C3029_RS16620	COG0517	IMP dehydrogenase activity
C3029_RS16620	COG0516	GMP reductase activity
C3029_RS16630	COG1645	bacterial-type flagellum-dependent swarming motility
C3029_RS16645	COG2976	Protein conserved in bacteria
C3029_RS16675	COG4953	penicillin-binding protein 1C
C3029_RS16680	COG2373	Large extracellular alpha-helical protein
C3029_RS16685	COG2897	thiosulfate sulfurtransferase activity
C3029_RS16695	COG2801	Transposase and inactivated derivatives
C3029_RS16710	COG2975	iron-sulfur cluster assembly
C3029_RS16715	COG0633	Ferredoxin
C3029_RS16735	COG0822	iron-sulfur transferase activity
C3029_RS16755	COG0483	inositol monophosphate 1-phosphatase activity
C3029_RS16760	COG1073	alpha beta
C3029_RS16765	COG3711	transcriptional antiterminator
C3029_RS16770	COG2814	Major facilitator Superfamily
C3029_RS16775	COG0583	DNA-binding transcription factor activity
C3029_RS16780	COG4638	Rieske (2fe-2S)
C3029_RS16805	COG2259	Doxx family
C3029_RS16810	COG2017	converts alpha-aldose to the beta-anomer
C3029_RS16815	COG1063	alcohol dehydrogenase
C3029_RS16820	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3029_RS16825	COG1129	ABC transporter
C3029_RS16830	COG1879	ABC-type sugar transport system periplasmic component
C3029_RS16835	COG0457	Tetratricopeptide repeat
C3029_RS16840	COG1940	carbohydrate kinase activity
C3029_RS16850	COG1017	nitric oxide dioxygenase activity
C3029_RS16850	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3029_RS16855	COG0347	Belongs to the P(II) protein family
C3029_RS16860	COG2204	response regulator
C3029_RS16865	COG3170	Tfp pilus assembly protein FimV
C3029_RS16870	COG2205	protein histidine kinase activity
C3029_RS16895	COG0560	Phosphoserine phosphatase
C3029_RS16900	COG1737	Transcriptional regulator
C3029_RS16905	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS16930	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
C3029_RS16950	COG0681	Belongs to the peptidase S26 family
C3029_RS16960	COG3086	response to oxidative stress
C3029_RS16965	COG3026	antisigma factor binding
C3029_RS16970	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
C3029_RS16975	COG1595	DNA-templated transcription, initiation
C3029_RS16985	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
C3029_RS16995	COG0513	Belongs to the DEAD box helicase family
C3029_RS17005	COG0583	DNA-binding transcription factor activity
C3029_RS17025	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3029_RS17035	COG3118	belongs to the thioredoxin family
C3029_RS17040	COG3148	PFAM DTW domain containing protein
C3029_RS17045	COG0045	succinate-CoA ligase (ADP-forming) activity
C3029_RS17045	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3029_RS17045	COG1042	CoA-binding domain protein
C3029_RS17050	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3029_RS17055	COG5544	Lipoprotein
C3029_RS17060	COG0477	Major facilitator Superfamily
C3029_RS17085	COG0542	response to heat
C3029_RS17095	COG0564	pseudouridine synthase activity
C3029_RS17100	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3029_RS17110	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
C3029_RS17115	COG1605	Chorismate mutase
C3029_RS17115	COG0077	Prephenate dehydratase
C3029_RS17120	COG0287	Prephenate dehydrogenase
C3029_RS17120	COG1605	Chorismate mutase
C3029_RS17125	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C3029_RS17140	COG2199	diguanylate cyclase activity
C3029_RS17145	COG2885	chlorophyll binding
C3029_RS17170	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
C3029_RS17175	COG4137	Cytochrome C assembly protein
C3029_RS17180	COG4536	flavin adenine dinucleotide binding
C3029_RS17200	COG0497	DNA recombination
C3029_RS17205	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3029_RS17215	COG2867	negative regulation of translational initiation
C3029_RS17230	COG0582	viral genome integration into host DNA
C3029_RS17240	COG1475	DNA binding
C3029_RS17260	COG0579	oxidoreductase
C3029_RS17265	COG1012	belongs to the aldehyde dehydrogenase family
C3029_RS17270	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C3029_RS17275	COG1113	amino acid transport
C3029_RS17280	COG1802	Transcriptional regulator
C3029_RS17285	COG1652	LysM domain
C3029_RS17290	COG0401	homolog of Blt101
C3029_RS17295	COG0640	Transcriptional regulator
C3029_RS17300	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3029_RS17305	COG2916	Histone family protein nucleoid-structuring protein H-NS
C3029_RS17320	COG4575	ribosome binding
C3029_RS17325	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
C3029_RS17335	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3029_RS17340	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3029_RS17345	COG4175	Glycine betaine
C3029_RS17350	COG4176	ABC-type proline glycine betaine transport system permease component
C3029_RS17355	COG2113	Glycine betaine
C3029_RS17360	COG2814	Major facilitator Superfamily
C3029_RS17365	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
C3029_RS17375	COG1846	Transcriptional regulator
C3029_RS17380	COG1566	PFAM secretion protein HlyD family protein
C3029_RS17385	COG2814	Major facilitator Superfamily
C3029_RS17400	COG1238	metal cluster binding
C3029_RS17405	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3029_RS17435	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
C3029_RS17460	COG1546	Belongs to the CinA family
C3029_RS17465	COG2951	lytic endotransglycosylase activity
C3029_RS17470	COG3730	PTS system glucitol sorbitol-specific
C3029_RS17475	COG3732	PTS system glucitol sorbitol-specific
C3029_RS17485	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS17490	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS17495	COG1349	DNA-binding transcription factor activity
C3029_RS17500	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
C3029_RS17500	COG0517	IMP dehydrogenase activity
C3029_RS17520	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
C3029_RS17525	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS17530	COG1609	Transcriptional regulator
C3029_RS17535	COG1263	PTS System
C3029_RS17535	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS17540	COG2723	6-phospho-beta-galactosidase activity
C3029_RS17545	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
C3029_RS17555	COG3260	NADH ubiquinone oxidoreductase 20
C3029_RS17560	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3029_RS17565	COG3261	NADH dehydrogenase
C3029_RS17565	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
C3029_RS17570	COG0650	Formate hydrogenlyase subunit 4
C3029_RS17575	COG0651	ATP synthesis coupled electron transport
C3029_RS17580	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS17595	COG0375	protein maturation
C3029_RS17600	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
C3029_RS17605	COG0298	carbon dioxide binding
C3029_RS17610	COG0409	Hydrogenase expression formation protein
C3029_RS17615	COG0309	Hydrogenase expression formation protein (HypE)
C3029_RS17620	COG3604	Transcriptional regulator
C3029_RS17635	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C3029_RS17640	COG1349	DNA-binding transcription factor activity
C3029_RS17645	COG2084	Dehydrogenase
C3029_RS17650	COG3395	kinase activity
C3029_RS17655	COG0235	Class ii aldolase
C3029_RS17660	COG3622	Belongs to the hyi family
C3029_RS17665	COG2610	gluconate transmembrane transporter activity
C3029_RS17670	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C3029_RS17675	COG4942	peptidase
C3029_RS17675	COG1388	LysM domain
C3029_RS17730	COG2234	aminopeptidase activity
C3029_RS17735	COG3385	transposase activity
C3029_RS17750	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3029_RS17760	COG0720	synthase
C3029_RS17765	COG0644	oxidoreductase
C3029_RS17770	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
C3029_RS17775	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
C3029_RS17780	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
C3029_RS17785	COG2086	electron transfer activity
C3029_RS17790	COG0477	Major facilitator Superfamily
C3029_RS17795	COG0277	FAD linked oxidase domain protein
C3029_RS17800	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS17805	COG2223	nitrite transmembrane transporter activity
C3029_RS17810	COG1070	Carbohydrate kinase
C3029_RS17815	COG0602	queuosine metabolic process
C3029_RS17825	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
C3029_RS17840	COG3956	TIGRFAM MazG family protein
C3029_RS17845	COG2337	Toxic component of a toxin-antitoxin (TA) module
C3029_RS17850	COG2336	PFAM SpoVT AbrB
C3029_RS17855	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C3029_RS17860	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
C3029_RS17865	COG4999	Histidine kinase
C3029_RS17865	COG3850	Histidine kinase
C3029_RS17865	COG3437	response regulator, receiver
C3029_RS17865	COG2205	protein histidine kinase activity
C3029_RS17870	COG4948	Mandelate Racemase Muconate Lactonizing
C3029_RS17875	COG4948	Mandelate Racemase Muconate Lactonizing
C3029_RS17880	COG2271	Major facilitator Superfamily
C3029_RS17885	COG0716	FMN binding
C3029_RS17890	COG0564	pseudouridine synthase activity
C3029_RS17895	COG3098	single-species biofilm formation
C3029_RS17915	COG1611	Belongs to the LOG family
C3029_RS17920	COG0814	amino acid
C3029_RS17925	COG1760	l-serine dehydratase
C3029_RS17935	COG1454	alcohol dehydrogenase
C3029_RS17940	COG0235	Class ii aldolase
C3029_RS17950	COG0235	Class ii aldolase
C3029_RS17960	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
C3029_RS17965	COG1609	Transcriptional regulator
C3029_RS17970	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3029_RS17975	COG1129	ABC transporter
C3029_RS17985	COG1070	Carbohydrate kinase
C3029_RS17995	COG1349	DNA-binding transcription factor activity
C3029_RS18005	COG2363	Small membrane protein
C3029_RS18010	COG0583	DNA-binding transcription factor activity
C3029_RS18020	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
C3029_RS18025	COG2166	iron-sulfur cluster assembly
C3029_RS18030	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
C3029_RS18035	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
C3029_RS18055	COG0860	N-Acetylmuramoyl-L-alanine amidase
C3029_RS18060	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C3029_RS18060	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
C3029_RS18065	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
C3029_RS18070	COG1074	ATP-dependent DNA helicase activity
C3029_RS18080	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
C3029_RS18085	COG4967	type IV pilus modification protein PilV
C3029_RS18095	COG4795	General secretion pathway protein
C3029_RS18100	COG2165	general secretion pathway protein
C3029_RS18115	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
C3029_RS18140	COG0861	Integral membrane protein TerC family
C3029_RS18150	COG0667	Aldo Keto reductase
C3029_RS18165	COG1609	Transcriptional regulator
C3029_RS18175	COG0583	DNA-binding transcription factor activity
C3029_RS18180	COG1794	racemase activity, acting on amino acids and derivatives
C3029_RS18185	COG2814	Major facilitator Superfamily
C3029_RS18190	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS18195	COG2963	transposase activity
C3029_RS18200	COG2801	Transposase and inactivated derivatives
C3029_RS18205	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS18215	COG0183	Belongs to the thiolase family
C3029_RS18220	COG0814	amino acid
C3029_RS18225	COG0814	amino acid
C3029_RS18230	COG2771	luxR family
C3029_RS18240	COG2801	Transposase and inactivated derivatives
C3029_RS18245	COG3387	PFAM Glycoside hydrolase 15-related
C3029_RS18255	COG4942	peptidase
C3029_RS18260	COG1529	Aldehyde oxidase and xanthine dehydrogenase
C3029_RS18265	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
C3029_RS18270	COG2080	2 iron, 2 sulfur cluster binding
C3029_RS18275	COG3829	transcription factor binding
C3029_RS18280	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
C3029_RS18285	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C3029_RS18290	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C3029_RS18300	COG0549	Belongs to the carbamate kinase family
C3029_RS18305	COG3608	succinylglutamate desuccinylase aspartoacylase
C3029_RS18305	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
C3029_RS18310	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C3029_RS18315	COG2068	MobA-Related Protein
C3029_RS18320	COG0493	'glutamate synthase
C3029_RS18320	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS18325	COG0402	S-adenosylhomocysteine deaminase activity
C3029_RS18330	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
C3029_RS18335	COG2080	2 iron, 2 sulfur cluster binding
C3029_RS18335	COG1529	Aldehyde oxidase and xanthine dehydrogenase
C3029_RS18340	COG2233	PERMEase
C3029_RS18350	COG1166	arginine decarboxylase activity
C3029_RS18360	COG0501	Belongs to the peptidase M48B family
C3029_RS18365	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
C3029_RS18370	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS18375	COG2213	PTS system mannitol-specific
C3029_RS18380	COG1063	alcohol dehydrogenase
C3029_RS18385	COG1494	fructose-1,6-bisphosphatase
C3029_RS18390	COG3722	fumarate hydratase activity
C3029_RS18395	COG1072	(Pantothenic acid kinase))
C3029_RS18410	COG0191	fructose-bisphosphate aldolase activity
C3029_RS18415	COG0668	transmembrane transport
C3029_RS18420	COG1279	arginine transmembrane transporter activity
C3029_RS18425	COG2968	Membrane
C3029_RS18430	COG0583	DNA-binding transcription factor activity
C3029_RS18435	COG0427	acetyl-CoA hydrolase
C3029_RS18440	COG1024	Enoyl-CoA hydratase
C3029_RS18445	COG1703	isobutyryl-CoA mutase activity
C3029_RS18450	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
C3029_RS18450	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
C3029_RS18470	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3029_RS18475	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
C3029_RS18495	COG0006	proline dipeptidase activity
C3029_RS18500	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3029_RS18505	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3029_RS18525	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS18530	COG2723	6-phospho-beta-galactosidase activity
C3029_RS18540	COG1272	protein, Hemolysin III
C3029_RS18550	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
C3029_RS18560	COG0716	FMN binding
C3029_RS18565	COG4974	Belongs to the 'phage' integrase family
C3029_RS18570	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3029_RS18575	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
C3029_RS18585	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
C3029_RS18600	COG2233	PERMEase
C3029_RS18610	COG0493	'glutamate synthase
C3029_RS18610	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS18615	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS18620	COG2252	PERMEase
C3029_RS18625	COG0402	S-adenosylhomocysteine deaminase activity
C3029_RS18635	COG1166	arginine decarboxylase activity
C3029_RS18660	COG2814	Major facilitator Superfamily
C3029_RS18670	COG2356	endonuclease I
C3029_RS18675	COG1385	rRNA (uridine-N3-)-methyltransferase activity
C3029_RS18680	COG0189	ligase activity
C3029_RS18695	COG2805	Type II/IV secretion system protein
C3029_RS18700	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
C3029_RS18705	COG0762	integral membrane protein
C3029_RS18715	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
C3029_RS18720	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C3029_RS18730	COG0252	asparaginase activity
C3029_RS18745	COG3171	Protein conserved in bacteria
C3029_RS18755	COG1194	a g-specific adenine glycosylase
C3029_RS18770	COG2211	Major facilitator Superfamily
C3029_RS18775	COG1982	Orn Lys Arg decarboxylase major
C3029_RS18780	COG1811	Na channel or pump
C3029_RS18790	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
C3029_RS18800	COG3031	protein transport across the cell outer membrane
C3029_RS18810	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
C3029_RS18815	COG3064	Membrane
C3029_RS18825	COG1620	l-lactate permease
C3029_RS18830	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
C3029_RS18835	COG3193	protein, possibly involved in utilization of glycolate and propanediol
C3029_RS18840	COG0247	lactate metabolic process
C3029_RS18845	COG0277	FAD linked oxidase domain protein
C3029_RS18850	COG0277	FAD linked oxidase domain protein
C3029_RS18855	COG2186	Transcriptional regulator
C3029_RS18860	COG0456	acetyltransferase
C3029_RS18865	COG0318	PFAM AMP-dependent synthetase and ligase
C3029_RS18875	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
C3029_RS18880	COG0156	8-amino-7-oxononanoate synthase activity
C3029_RS18890	COG0795	lipopolysaccharide-transporting ATPase activity
C3029_RS18895	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
C3029_RS18905	COG2244	polysaccharide biosynthetic process
C3029_RS18910	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
C3029_RS18915	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
C3029_RS18920	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
C3029_RS18925	COG0306	phosphate transporter
C3029_RS18935	COG0306	phosphate transporter
C3029_RS18940	COG0754	glutathionylspermidine amidase activity
C3029_RS18945	COG0625	glutathione transferase activity
C3029_RS18950	COG0298	carbon dioxide binding
C3029_RS18955	COG0375	protein maturation
C3029_RS18960	COG1773	rubredoxin
C3029_RS18965	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
C3029_RS18970	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
C3029_RS18975	COG5557	Pfam Polysulphide reductase, NrfD
C3029_RS18980	COG0437	4 iron, 4 sulfur cluster binding
C3029_RS18985	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
C3029_RS19005	COG0667	Aldo Keto reductase
C3029_RS19015	COG1028	Short-chain dehydrogenase reductase Sdr
C3029_RS19020	COG0848	biopolymer transport protein
C3029_RS19025	COG0811	peptide transport
C3029_RS19035	COG0626	cystathionine gamma-synthase activity
C3029_RS19040	COG0586	Pfam SNARE associated Golgi protein
C3029_RS19045	COG2207	Transcriptional regulator
C3029_RS19055	COG1979	alcohol dehydrogenase
C3029_RS19060	COG0656	L-ascorbic acid biosynthetic process
C3029_RS19070	COG4238	major outer membrane lipoprotein
C3029_RS19075	COG1032	radical SAM domain protein
C3029_RS19080	COG2132	Multicopper oxidase
C3029_RS19085	COG0204	Acyl-transferase
C3029_RS19090	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
C3029_RS19095	COG4166	transmembrane transport
C3029_RS19100	COG2944	sequence-specific DNA binding
C3029_RS19110	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
C3029_RS19115	COG3111	PFAM Bacterial OB fold (BOF) protein
C3029_RS19120	COG0745	RESPONSE REGULATOR receiver
C3029_RS19125	COG0642	Histidine kinase
C3029_RS19135	COG2249	NAD(P)H dehydrogenase (quinone) activity
C3029_RS19140	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
C3029_RS19145	COG0187	DNA topoisomerase II activity
C3029_RS19150	COG3150	esterase
C3029_RS19155	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
C3029_RS19160	COG3151	Protein conserved in bacteria
C3029_RS19165	COG0494	nUDIX hydrolase
C3029_RS19170	COG1538	Outer membrane efflux protein
C3029_RS19185	COG0754	glutathionylspermidine amidase activity
C3029_RS19190	COG3384	dioxygenase
C3029_RS19210	COG2960	long-chain fatty acid transporting porin activity
C3029_RS19215	COG3539	Fimbrial protein
C3029_RS19220	COG3188	usher protein
C3029_RS19225	COG3121	Chaperone
C3029_RS19230	COG3539	Fimbrial protein
C3029_RS19240	COG1585	Membrane protein implicated in regulation of membrane protease activity
C3029_RS19245	COG2268	Band 7 protein
C3029_RS19270	COG3025	triphosphatase activity
C3029_RS19280	COG4991	sh3 domain protein
C3029_RS19295	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
C3029_RS19305	COG0583	DNA-binding transcription factor activity
C3029_RS19310	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
C3029_RS19315	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
C3029_RS19320	COG0471	metal ion transport
C3029_RS19330	COG0828	Belongs to the bacterial ribosomal protein bS21 family
C3029_RS19335	COG0358	DNA primase activity
C3029_RS19340	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C3029_RS19355	COG2375	cellular response to nickel ion
C3029_RS19360	COG1695	Transcriptional regulator
C3029_RS19365	COG0840	transmembrane signaling receptor activity
C3029_RS19375	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3029_RS19380	COG1609	Transcriptional regulator
C3029_RS19385	COG3250	beta-galactosidase activity
C3029_RS19390	COG2731	YhcH YjgK YiaL family protein
C3029_RS19395	COG0531	amino acid
C3029_RS19405	COG3408	Glycogen debranching enzyme
C3029_RS19405	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
C3029_RS19410	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3029_RS19410	COG1902	pentaerythritol trinitrate reductase activity
C3029_RS19415	COG5499	transcription regulator containing HTH domain
C3029_RS19420	COG4680	protein conserved in bacteria
C3029_RS19435	COG1451	nucleotide metabolic process
C3029_RS19440	COG2949	membrane
C3029_RS19445	COG0673	inositol 2-dehydrogenase activity
C3029_RS19450	COG0861	Integral membrane protein TerC family
C3029_RS19455	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
C3029_RS19465	COG2721	sulfolactate sulfo-lyase activity
C3029_RS19475	COG2271	Major facilitator Superfamily
C3029_RS19480	COG2186	Transcriptional regulator
C3029_RS19485	COG0586	Pfam SNARE associated Golgi protein
C3029_RS19495	COG1422	Protein of unknown function (DUF1090)
C3029_RS19500	COG4575	ribosome binding
C3029_RS19505	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
C3029_RS19515	COG2259	Doxx family
C3029_RS19520	COG0435	Glutathione S-transferase
C3029_RS19525	COG3152	Membrane
C3029_RS19530	COG3152	Membrane
C3029_RS19535	COG0583	DNA-binding transcription factor activity
C3029_RS19540	COG1741	Belongs to the pirin family
C3029_RS19555	COG0814	amino acid
C3029_RS19560	COG1760	l-serine dehydratase
C3029_RS19565	COG0251	oxidation-reduction process
C3029_RS19570	COG1882	Formate acetyltransferase
C3029_RS19575	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
C3029_RS19585	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C3029_RS19590	COG0583	DNA-binding transcription factor activity
C3029_RS19615	COG1929	Belongs to the glycerate kinase type-1 family
C3029_RS19620	COG2084	Dehydrogenase
C3029_RS19630	COG2271	Major facilitator Superfamily
C3029_RS19635	COG2721	sulfolactate sulfo-lyase activity
C3029_RS19640	COG2002	toxin-antitoxin pair type II binding
C3029_RS19650	COG1349	DNA-binding transcription factor activity
C3029_RS19660	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS19670	COG3716	PTS system mannose fructose sorbose family IID component
C3029_RS19675	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS19680	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
C3029_RS19685	COG2222	sugar isomerase
C3029_RS19695	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3029_RS19700	COG3715	PTS system
C3029_RS19705	COG3716	PTS system mannose fructose sorbose family IID component
C3029_RS19710	COG0363	glucosamine-6-phosphate deaminase activity
C3029_RS19715	COG3539	Fimbrial protein
C3029_RS19720	COG3121	Chaperone
C3029_RS19725	COG3188	usher protein
C3029_RS19730	COG3539	Fimbrial protein
C3029_RS19735	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
C3029_RS19740	COG3107	peptidoglycan biosynthetic process
C3029_RS19755	COG2823	Periplasmic or secreted lipoprotein
C3029_RS19760	COG0701	Predicted permease
C3029_RS19765	COG0702	epimerase
C3029_RS19770	COG0693	protein deglycase activity
C3029_RS19785	COG3153	acetyltransferase
C3029_RS19790	COG3154	lipid carrier protein
C3029_RS19795	COG0826	peptidase U32
C3029_RS19800	COG0826	peptidase U32
C3029_RS19805	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3029_RS19810	COG0814	amino acid
C3029_RS19820	COG0513	Belongs to the DEAD box helicase family
C3029_RS19855	COG0195	Participates in both transcription termination and antitermination
C3029_RS19875	COG2194	sulfuric ester hydrolase activity
C3029_RS19885	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C3029_RS19895	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
C3029_RS19900	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C3029_RS19910	COG1534	Rna-binding protein
C3029_RS19915	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C3029_RS19920	COG2027	D-alanyl-D-alanine carboxypeptidase
C3029_RS19930	COG0697	spore germination
C3029_RS19945	COG0142	geranyltranstransferase activity
C3029_RS19950	COG3423	Transcriptional regulator
C3029_RS19960	COG5007	Belongs to the BolA IbaG family
C3029_RS19965	COG3113	response to antibiotic
C3029_RS19970	COG2854	intermembrane phospholipid transfer
C3029_RS19975	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C3029_RS19980	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
C3029_RS19985	COG1127	ABC transporter
C3029_RS19990	COG0530	calcium, potassium:sodium antiporter activity
C3029_RS19995	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
C3029_RS19995	COG0517	IMP dehydrogenase activity
C3029_RS20000	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
C3029_RS20005	COG3117	lipopolysaccharide transmembrane transporter activity
C3029_RS20010	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
C3029_RS20015	COG1137	ATPase activity
C3029_RS20020	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
C3029_RS20025	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
C3029_RS20040	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS20045	COG0515	serine threonine protein kinase
C3029_RS20055	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
C3029_RS20060	COG0784	Response regulator, receiver
C3029_RS20060	COG2198	Histidine kinase
C3029_RS20060	COG5002	protein histidine kinase activity
C3029_RS20065	COG1242	4 iron, 4 sulfur cluster binding
C3029_RS20070	COG0069	glutamate synthase activity
C3029_RS20070	COG0067	glutamate synthase
C3029_RS20070	COG0070	glutamate synthase
C3029_RS20075	COG0493	'glutamate synthase
C3029_RS20080	COG4804	nuclease activity
C3029_RS20090	COG2731	YhcH YjgK YiaL family protein
C3029_RS20120	COG3069	C4-dicarboxylate transmembrane transporter activity
C3029_RS20125	COG2969	positive regulation of protein catabolic process
C3029_RS20130	COG0625	glutathione transferase activity
C3029_RS20145	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
C3029_RS20150	COG3105	Protein conserved in bacteria
C3029_RS20155	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3029_RS20160	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3029_RS20180	COG2732	(Barnase) inhibitor
C3029_RS20200	COG0583	DNA-binding transcription factor activity
C3029_RS20205	COG0312	modulator of DNA gyrase
C3029_RS20210	COG3164	Protein of unknown function
C3029_RS20215	COG1530	ribonuclease E activity
C3029_RS20220	COG0424	maF-like protein
C3029_RS20225	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
C3029_RS20230	COG1792	Involved in formation and maintenance of cell shape
C3029_RS20235	COG1077	Cell shape determining protein MreB Mrl
C3029_RS20245	COG2200	EAL domain
C3029_RS20245	COG2199	diguanylate cyclase activity
C3029_RS20250	COG0604	alcohol dehydrogenase
C3029_RS20270	COG0511	ligase activity, forming carbon-carbon bonds
C3029_RS20275	COG0439	Biotin carboxylase
C3029_RS20280	COG3924	membrane
C3029_RS20285	COG4145	pantothenate transmembrane transporter activity
C3029_RS20295	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C3029_RS20305	COG2189	Belongs to the N(4) N(6)-methyltransferase family
C3029_RS20315	COG1309	transcriptional regulator
C3029_RS20320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3029_RS20325	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3029_RS20340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3029_RS20345	COG4597	amino acid ABC transporter
C3029_RS20350	COG0765	amino acid transport
C3029_RS20355	COG1126	abc transporter atp-binding protein
C3029_RS20395	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
C3029_RS20415	COG0551	DNA topoisomerase type I activity
C3029_RS20425	COG0758	DNA mediated transformation
C3029_RS20445	COG0569	domain protein
C3029_RS20455	COG3036	rescue of stalled ribosome
C3029_RS20460	COG0789	Transcriptional regulator
C3029_RS20500	COG0201	protein transport
C3029_RS20590	COG0089	rRNA binding
C3029_RS20615	COG3409	Peptidoglycan-binding domain 1 protein
C3029_RS20615	COG3267	Type II secretory pathway component ExeA
C3029_RS20620	COG3031	protein transport across the cell outer membrane
C3029_RS20625	COG1450	Type ii and iii secretion system protein
C3029_RS20630	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
C3029_RS20635	COG1459	type II secretion system
C3029_RS20640	COG2165	general secretion pathway protein
C3029_RS20645	COG2165	general secretion pathway protein
C3029_RS20650	COG2165	general secretion pathway protein
C3029_RS20655	COG4795	General secretion pathway protein
C3029_RS20660	COG3156	type II secretion system protein K
C3029_RS20665	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
C3029_RS20670	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
C3029_RS20675	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
C3029_RS20680	COG2193	ferroxidase activity
C3029_RS20685	COG2906	2 iron, 2 sulfur cluster binding
C3029_RS20690	COG3979	chitinase
C3029_RS20730	COG2964	Protein conserved in bacteria
C3029_RS20735	COG0545	Peptidyl-prolyl cis-trans isomerase
C3029_RS20745	COG1047	Peptidyl-prolyl cis-trans
C3029_RS20750	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
C3029_RS20765	COG0488	(ABC) transporter
C3029_RS20770	COG0429	hydrolase of the alpha beta-hydrolase fold
C3029_RS20780	COG3954	Phosphoribulokinase
C3029_RS20785	COG1765	OsmC-like protein
C3029_RS20795	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3029_RS20800	COG1289	transmembrane transporter activity
C3029_RS20805	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C3029_RS20810	COG0512	Glutamine amidotransferase of anthranilate synthase
C3029_RS20815	COG2184	nucleotidyltransferase activity
C3029_RS20825	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
C3029_RS20835	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3029_RS20840	COG2146	nitrite reductase [NAD(P)H] activity
C3029_RS20845	COG2116	formate transmembrane transporter activity
C3029_RS20860	COG0531	amino acid
C3029_RS20865	COG2222	sugar isomerase
C3029_RS20870	COG1082	Xylose isomerase domain protein TIM barrel
C3029_RS20875	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3029_RS20880	COG2188	Transcriptional regulator
C3029_RS20885	COG0626	cystathionine gamma-synthase activity
C3029_RS20895	COG0626	cystathionine gamma-synthase activity
C3029_RS20910	COG1735	metal-dependent hydrolase with the TIM-barrel fold
C3029_RS20915	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
C3029_RS20920	COG3457	Alanine racemase
C3029_RS20930	COG2188	Transcriptional regulator
C3029_RS20935	COG0180	Tryptophanyl-tRNA synthetase
C3029_RS20940	COG0546	phosphoglycolate phosphatase activity
C3029_RS20945	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C3029_RS20950	COG0338	D12 class N6 adenine-specific DNA methyltransferase
C3029_RS20955	COG3266	domain, Protein
C3029_RS20970	COG4796	Type ii and iii secretion system protein
C3029_RS20985	COG3166	PFAM Fimbrial assembly family protein
C3029_RS20990	COG4972	Pilus assembly protein
C3029_RS20995	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
C3029_RS21000	COG0494	nUDIX hydrolase
C3029_RS21010	COG1011	Hydrolase
C3029_RS21015	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
C3029_RS21025	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
C3029_RS21050	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C3029_RS21055	COG2183	response to ionizing radiation
C3029_RS21060	COG1918	ferrous iron import across plasma membrane
C3029_RS21065	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
C3029_RS21075	COG5464	transposase or invertase
C3029_RS21095	COG2610	gluconate transmembrane transporter activity
C3029_RS21100	COG1640	4-alpha-glucanotransferase
C3029_RS21105	COG0058	SHG alpha-glucan phosphorylase activity
C3029_RS21120	COG1690	Belongs to the RtcB family
C3029_RS21125	COG4650	regulator
C3029_RS21130	COG1349	DNA-binding transcription factor activity
C3029_RS21145	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
C3029_RS21160	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
C3029_RS21165	COG0058	SHG alpha-glucan phosphorylase activity
C3029_RS21190	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
C3029_RS21195	COG2095	MarC family integral membrane protein
C3029_RS21200	COG2610	gluconate transmembrane transporter activity
C3029_RS21205	COG3265	gluconokinase activity
C3029_RS21210	COG1609	Transcriptional regulator
C3029_RS21215	COG1741	Belongs to the pirin family
C3029_RS21220	COG0673	inositol 2-dehydrogenase activity
C3029_RS21225	COG1247	-acetyltransferase
C3029_RS21230	COG3157	Type VI secretion system effector, Hcp
C3029_RS21245	COG0405	Gamma-glutamyltransferase
C3029_RS21255	COG0584	glycerophosphoryl diester phosphodiesterase
C3029_RS21260	COG3842	ATPase activity
C3029_RS21265	COG0395	ABC-type sugar transport system, permease component
C3029_RS21270	COG1175	transmembrane transport
C3029_RS21275	COG1653	transport
C3029_RS21285	COG0410	ABC transporter
C3029_RS21290	COG0411	ABC transporter
C3029_RS21295	COG4177	L-phenylalanine transmembrane transporter activity
C3029_RS21300	COG0559	Belongs to the binding-protein-dependent transport system permease family
C3029_RS21305	COG0683	leucine binding
C3029_RS21310	COG0456	acetyltransferase
C3029_RS21320	COG0683	leucine binding
C3029_RS21325	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C3029_RS21330	COG2177	Part of the ABC transporter FtsEX involved in
C3029_RS21335	COG2884	Cell division ATP-binding protein ftsE
C3029_RS21340	COG0552	protein localization to endoplasmic reticulum
C3029_RS21345	COG0742	ribosomal rna small subunit methyltransferase
C3029_RS21350	COG3776	membrane
C3029_RS21360	COG3714	YhhN family
C3029_RS21375	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
C3029_RS21385	COG0477	Major facilitator Superfamily
C3029_RS21390	COG0628	permease
C3029_RS21395	COG2091	lysine biosynthetic process via aminoadipic acid
C3029_RS21400	COG0747	negative chemotaxis
C3029_RS21405	COG0601	transmembrane transport
C3029_RS21410	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3029_RS21415	COG0444	Belongs to the ABC transporter superfamily
C3029_RS21430	COG3209	COG3209 Rhs family protein
C3029_RS21445	COG5433	transposase activity
C3029_RS21450	COG0842	Transport permease protein
C3029_RS21455	COG1129	ABC transporter
C3029_RS21455	COG0842	Transport permease protein
C3029_RS21460	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3029_RS21490	COG2081	HI0933 family
C3029_RS21495	COG0306	phosphate transporter
C3029_RS21505	COG0589	response to stress
C3029_RS21510	COG3104	oligopeptide transport
C3029_RS21520	COG0339	signal peptide processing
C3029_RS21525	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
C3029_RS21540	COG0640	Transcriptional regulator
C3029_RS21545	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
C3029_RS21550	COG1393	Belongs to the ArsC family
C3029_RS21570	COG3065	identical protein binding
C3029_RS21575	COG2197	response regulator
C3029_RS21580	COG1285	pathogenesis
C3029_RS21595	COG3247	response to pH
C3029_RS21600	COG2771	luxR family
C3029_RS21610	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3029_RS21615	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3029_RS21620	COG2207	Transcriptional regulator
C3029_RS21625	COG2207	Transcriptional regulator
C3029_RS21630	COG0076	glutamate decarboxylase activity
C3029_RS21635	COG1858	cytochrome C peroxidase
C3029_RS21645	COG2197	response regulator
C3029_RS21650	COG0583	DNA-binding transcription factor activity
C3029_RS21655	COG1295	ribonuclease BN
C3029_RS21660	COG0477	Major facilitator Superfamily
C3029_RS21665	COG2982	Protein involved in outer membrane biogenesis
C3029_RS21670	COG2200	EAL domain
C3029_RS21685	COG0612	Peptidase, M16
C3029_RS21695	COG2199	diguanylate cyclase activity
C3029_RS21695	COG2200	EAL domain
C3029_RS21700	COG0457	Tetratricopeptide repeat
C3029_RS21700	COG3118	belongs to the thioredoxin family
C3029_RS21705	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
C3029_RS21710	COG1215	transferase activity, transferring glycosyl groups
C3029_RS21715	COG1215	transferase activity, transferring glycosyl groups
C3029_RS21740	COG2194	sulfuric ester hydrolase activity
C3029_RS21760	COG0814	amino acid
C3029_RS21765	COG4608	Belongs to the ABC transporter superfamily
C3029_RS21770	COG0444	Belongs to the ABC transporter superfamily
C3029_RS21775	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3029_RS21780	COG0601	transmembrane transport
C3029_RS21790	COG0747	negative chemotaxis
C3029_RS21810	COG2194	sulfuric ester hydrolase activity
C3029_RS21815	COG2223	nitrite transmembrane transporter activity
C3029_RS21820	COG5571	outer membrane autotransporter
C3029_RS21825	COG2818	Glycosylase
C3029_RS21830	COG0456	acetyltransferase
C3029_RS21835	COG0243	molybdopterin cofactor binding
C3029_RS21840	COG2885	chlorophyll binding
C3029_RS21855	COG2944	sequence-specific DNA binding
C3029_RS21860	COG1278	Cold shock
C3029_RS21870	COG2963	transposase activity
C3029_RS21875	COG2801	Transposase and inactivated derivatives
C3029_RS21895	COG3274	enterobacterial common antigen metabolic process
C3029_RS21900	COG4682	membrane
C3029_RS21905	COG4682	membrane
C3029_RS21910	COG1070	Carbohydrate kinase
C3029_RS21920	COG4213	ABC transporter substrate-binding protein
C3029_RS21930	COG4214	carbohydrate transport
C3029_RS21935	COG2207	Transcriptional regulator
C3029_RS21935	COG1609	Transcriptional regulator
C3029_RS21940	COG2992	FlgJ-related protein
C3029_RS21945	COG0366	Alpha amylase catalytic
C3029_RS21950	COG3977	Valine--pyruvate aminotransferase
C3029_RS21960	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3029_RS21965	COG1414	Transcriptional regulator
C3029_RS21975	COG2731	YhcH YjgK YiaL family protein
C3029_RS21980	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
C3029_RS21985	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
C3029_RS21990	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
C3029_RS21995	COG1070	Carbohydrate kinase
C3029_RS22000	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
C3029_RS22005	COG3623	hexulose-6-phosphate isomerase
C3029_RS22010	COG0235	Class ii aldolase
C3029_RS22020	COG2211	Major facilitator Superfamily
C3029_RS22030	COG3713	MltA-interacting MipA family protein
C3029_RS22035	COG0583	DNA-binding transcription factor activity
C3029_RS22040	COG1566	PFAM secretion protein HlyD family protein
C3029_RS22055	COG1012	belongs to the aldehyde dehydrogenase family
C3029_RS22060	COG1454	alcohol dehydrogenase
C3029_RS22065	COG3276	selenocysteine insertion sequence binding
C3029_RS22075	COG0625	glutathione transferase activity
C3029_RS22080	COG3209	COG3209 Rhs family protein
C3029_RS22085	COG1413	lyase activity
C3029_RS22090	COG3209	COG3209 Rhs family protein
C3029_RS22095	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
C3029_RS22105	COG1566	PFAM secretion protein HlyD family protein
C3029_RS22115	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3029_RS22115	COG2213	PTS system mannitol-specific
C3029_RS22125	COG3722	fumarate hydratase activity
C3029_RS22145	COG5295	Hep Hag repeat protein
C3029_RS22150	COG1620	l-lactate permease
C3029_RS22155	COG2186	Transcriptional regulator
C3029_RS22165	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
C3029_RS22170	COG1045	serine acetyltransferase
C3029_RS22185	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
C3029_RS22190	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3029_RS22200	COG4942	peptidase
C3029_RS22205	COG2861	carbohydrate metabolic process
C3029_RS22210	COG1216	Glycosyl transferase, family 2
C3029_RS22220	COG0156	8-amino-7-oxononanoate synthase activity
C3029_RS22230	COG0859	PFAM glycosyl transferase family 9
C3029_RS22235	COG0859	PFAM glycosyl transferase family 9
C3029_RS22240	COG3307	-O-antigen
C3029_RS22245	COG1216	Glycosyl transferase, family 2
C3029_RS22250	COG1442	glycosyl transferase family 8
C3029_RS22255	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
C3029_RS22280	COG0515	serine threonine protein kinase
C3029_RS22285	COG0438	transferase activity, transferring glycosyl groups
C3029_RS22290	COG0859	PFAM glycosyl transferase family 9
C3029_RS22295	COG1519	Transferase
C3029_RS22325	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
C3029_RS22350	COG1561	YicC-like family, N-terminal region
C3029_RS22355	COG3645	SOS response
C3029_RS22360	COG2860	membrane
C3029_RS22370	COG0194	GDP metabolic process
C3029_RS22380	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C3029_RS22385	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3029_RS22390	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
C3029_RS22400	COG0786	glutamate:sodium symporter activity
C3029_RS22405	COG2233	PERMEase
C3029_RS22410	COG2982	Protein involved in outer membrane biogenesis
C3029_RS22415	COG1501	Belongs to the glycosyl hydrolase 31 family
C3029_RS22420	COG2211	Major facilitator Superfamily
C3029_RS22430	COG0582	viral genome integration into host DNA
C3029_RS22440	COG1609	Transcriptional regulator
C3029_RS22445	COG2271	Major facilitator Superfamily
C3029_RS22490	COG2963	transposase activity
C3029_RS22495	COG2826	transposase and inactivated derivatives, IS30 family
C3029_RS22525	COG2814	Major facilitator Superfamily
C3029_RS22530	COG0697	spore germination
C3029_RS22535	COG1464	Belongs to the NlpA lipoprotein family
C3029_RS22560	COG2252	PERMEase
C3029_RS22570	COG2271	Major facilitator Superfamily
C3029_RS22575	COG2271	Major facilitator Superfamily
C3029_RS22580	COG3851	Histidine kinase
C3029_RS22585	COG2197	response regulator
C3029_RS22590	COG0440	acetolactate synthase activity
C3029_RS22595	COG0028	Belongs to the TPP enzyme family
C3029_RS22620	COG2814	Major facilitator Superfamily
C3029_RS22625	COG0641	radical SAM
C3029_RS22635	COG2149	membrane
C3029_RS22645	COG3119	arylsulfatase activity
C3029_RS22650	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3029_RS22655	COG2207	Transcriptional regulator
C3029_RS22690	COG5645	(Lipo)protein
C3029_RS22695	COG0823	Involved in the tonB-independent uptake of proteins
C3029_RS22705	COG2271	Major facilitator Superfamily
C3029_RS22715	COG0800	Aldolase
C3029_RS22720	COG3734	2-keto-3-deoxy-galactonokinase
C3029_RS22725	COG2186	Transcriptional regulator
C3029_RS22735	COG0561	phosphatase activity
C3029_RS22740	COG3753	Protein conserved in bacteria
C3029_RS22750	COG0187	DNA topoisomerase II activity
C3029_RS22760	COG0592	DNA-directed DNA polymerase activity