locus-tag class description Eco28_RS00005 IPR020591 Chromosomal replication control, initiator DnaA-like Eco28_RS00005 IPR010921 Trp repressor/replication initiator Eco28_RS00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site Eco28_RS00005 IPR013317 Chromosomal replication initiator protein DnaA Eco28_RS00005 IPR038454 DnaA, N-terminal domain superfamily Eco28_RS00005 IPR001957 Chromosomal replication control, initiator DnaA Eco28_RS00005 IPR003593 AAA+ ATPase domain Eco28_RS00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal Eco28_RS00005 IPR024633 DnaA N-terminal domain Eco28_RS00010 IPR022637 DNA polymerase III, beta sliding clamp, central Eco28_RS00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal Eco28_RS00010 IPR001001 DNA polymerase III, beta sliding clamp Eco28_RS00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal Eco28_RS00015 IPR018078 DNA-binding, RecF, conserved site Eco28_RS00015 IPR042174 DNA-binding RecF, domain 2 Eco28_RS00015 IPR003395 RecF/RecN/SMC, N-terminal Eco28_RS00015 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS00015 IPR001238 DNA-binding, RecF Eco28_RS00020 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS00020 IPR034160 DNA gyrase subunit B, TOPRIM domain Eco28_RS00020 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS00020 IPR018522 DNA topoisomerase, type IIA, conserved site Eco28_RS00020 IPR002288 DNA gyrase B subunit, C-terminal Eco28_RS00020 IPR011557 DNA gyrase, subunit B Eco28_RS00020 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 Eco28_RS00020 IPR006171 TOPRIM domain Eco28_RS00020 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal Eco28_RS00020 IPR013760 DNA topoisomerase, type IIA-like domain superfamily Eco28_RS00020 IPR001241 DNA topoisomerase, type IIA Eco28_RS00020 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS00020 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS00020 IPR041423 DNA gyrase subunit B insert domain Eco28_RS00025 IPR027405 YidB-like Eco28_RS00025 IPR009282 Protein of unknown function DUF937 Eco28_RS00030 IPR036412 HAD-like superfamily Eco28_RS00030 IPR006379 HAD-superfamily hydrolase, subfamily IIB Eco28_RS00030 IPR023214 HAD superfamily Eco28_RS00030 IPR000150 Cof family Eco28_RS00040 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS00040 IPR002938 FAD-binding domain Eco28_RS00045 IPR011042 Six-bladed beta-propeller, TolB-like Eco28_RS00045 IPR011659 WD40-like Beta Propeller Eco28_RS00045 IPR022223 Protein of unknown function DUF3748 Eco28_RS00050 IPR010780 Protein of unknown function DUF1375 Eco28_RS00055 IPR023728 Small heat shock protein IbpA Eco28_RS00055 IPR008978 HSP20-like chaperone Eco28_RS00055 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain Eco28_RS00055 IPR002068 Alpha crystallin/Hsp20 domain Eco28_RS00060 IPR037913 Small heat shock protein IbpA/IbpB, ACD domain Eco28_RS00060 IPR022848 Small heat shock protein IbpB Eco28_RS00060 IPR002068 Alpha crystallin/Hsp20 domain Eco28_RS00060 IPR008978 HSP20-like chaperone Eco28_RS00065 IPR006037 Regulator of K+ conductance, C-terminal Eco28_RS00065 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Eco28_RS00065 IPR023018 Transport protein YidE, putative Eco28_RS00065 IPR006512 YidE/YbjL duplication Eco28_RS00070 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Eco28_RS00070 IPR000524 Transcription regulator HTH, GntR Eco28_RS00070 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS00070 IPR011663 UbiC transcription regulator-associated Eco28_RS00070 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS00075 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component Eco28_RS00075 IPR001996 Phosphotransferase system, IIB component, type 1 Eco28_RS00075 IPR036878 Glucose permease domain IIB Eco28_RS00075 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Eco28_RS00075 IPR003352 Phosphotransferase system, EIIC Eco28_RS00075 IPR013013 Phosphotransferase system, EIIC component, type 1 Eco28_RS00075 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Eco28_RS00080 IPR001088 Glycoside hydrolase, family 4 Eco28_RS00080 IPR022616 Glycosyl hydrolase, family 4, C-terminal Eco28_RS00080 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Eco28_RS00080 IPR036291 NAD(P)-binding domain superfamily Eco28_RS00080 IPR019802 Glycoside hydrolase, family 4, conserved site Eco28_RS00085 IPR003313 AraC-type arabinose-binding/dimerisation domain Eco28_RS00085 IPR009057 Homeobox-like domain superfamily Eco28_RS00085 IPR018062 HTH domain AraC-type, conserved site Eco28_RS00085 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS00085 IPR037923 Transcription regulator HTH-like Eco28_RS00090 IPR038377 Sodium/glucose symporter superfamily Eco28_RS00090 IPR001734 Sodium/solute symporter Eco28_RS00090 IPR018212 Sodium/solute symporter, conserved site Eco28_RS00095 IPR000917 Sulfatase, N-terminal Eco28_RS00095 IPR024607 Sulfatase, conserved site Eco28_RS00095 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS00095 IPR032506 Domain of unknown function DUF4976 Eco28_RS00100 IPR016512 Uncharacterised protein family, inner membrane YidI Eco28_RS00105 IPR003807 Domain of unknown function DUF202 Eco28_RS00110 IPR003807 Domain of unknown function DUF202 Eco28_RS00115 IPR013785 Aldolase-type TIM barrel Eco28_RS00120 IPR004734 Multidrug resistance protein Eco28_RS00120 IPR036259 MFS transporter superfamily Eco28_RS00120 IPR011701 Major facilitator superfamily Eco28_RS00120 IPR020846 Major facilitator superfamily domain Eco28_RS00125 IPR025211 Toxin TisB, type I toxin-antitoxin system Eco28_RS00145 IPR012566 IlvB leader peptide Eco28_RS00150 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Eco28_RS00150 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS00150 IPR029061 Thiamin diphosphate-binding fold Eco28_RS00150 IPR012000 Thiamine pyrophosphate enzyme, central domain Eco28_RS00150 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Eco28_RS00150 IPR000399 TPP-binding enzyme, conserved site Eco28_RS00150 IPR039368 Acetolactate synthase large subunit, TPP binding domain Eco28_RS00150 IPR012846 Acetolactate synthase, large subunit, biosynthetic Eco28_RS00155 IPR002912 ACT domain Eco28_RS00155 IPR039557 AHAS, ACT domain Eco28_RS00155 IPR004789 Acetolactate synthase, small subunit Eco28_RS00180 IPR011006 CheY-like superfamily Eco28_RS00180 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS00180 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS00180 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS00185 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain Eco28_RS00185 IPR007895 MASE1 Eco28_RS00185 IPR005467 Histidine kinase domain Eco28_RS00185 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS00185 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS00190 IPR021159 Glycerate/sugar phosphate transporter, conserved site Eco28_RS00190 IPR036259 MFS transporter superfamily Eco28_RS00190 IPR000849 Sugar phosphate transporter Eco28_RS00190 IPR011701 Major facilitator superfamily Eco28_RS00190 IPR020846 Major facilitator superfamily domain Eco28_RS00195 IPR036259 MFS transporter superfamily Eco28_RS00195 IPR011701 Major facilitator superfamily Eco28_RS00195 IPR000849 Sugar phosphate transporter Eco28_RS00195 IPR021159 Glycerate/sugar phosphate transporter, conserved site Eco28_RS00195 IPR020846 Major facilitator superfamily domain Eco28_RS00200 IPR026912 Adenine deaminase C-terminal domain Eco28_RS00200 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS00200 IPR032466 Metal-dependent hydrolase Eco28_RS00200 IPR006679 Adenine deaminase Eco28_RS00200 IPR006680 Amidohydrolase-related Eco28_RS00205 IPR026033 Azaguanine-like transporters Eco28_RS00205 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS00210 IPR009587 Protein of unknown function DUF1198 Eco28_RS00230 IPR011701 Major facilitator superfamily Eco28_RS00230 IPR023680 Purine ribonucleoside efflux pump, NepI Eco28_RS00230 IPR036259 MFS transporter superfamily Eco28_RS00230 IPR020846 Major facilitator superfamily domain Eco28_RS00235 IPR018392 LysM domain Eco28_RS00235 IPR022409 PKD/Chitinase domain Eco28_RS00235 IPR038177 Inverse autotransporter, beta-domain superfamily Eco28_RS00235 IPR013783 Immunoglobulin-like fold Eco28_RS00235 IPR003535 Intimin/invasin bacterial adhesion mediator protein Eco28_RS00235 IPR008964 Invasin/intimin cell-adhesion fragments Eco28_RS00235 IPR015217 Invasin, domain 3 Eco28_RS00235 IPR003344 Big-1 (bacterial Ig-like domain 1) domain Eco28_RS00235 IPR024519 Inverse autotransporter, beta-domain Eco28_RS00240 IPR022409 PKD/Chitinase domain Eco28_RS00240 IPR024519 Inverse autotransporter, beta-domain Eco28_RS00240 IPR038177 Inverse autotransporter, beta-domain superfamily Eco28_RS00240 IPR013783 Immunoglobulin-like fold Eco28_RS00240 IPR003535 Intimin/invasin bacterial adhesion mediator protein Eco28_RS00240 IPR008964 Invasin/intimin cell-adhesion fragments Eco28_RS00240 IPR015217 Invasin, domain 3 Eco28_RS00240 IPR018392 LysM domain Eco28_RS00240 IPR003344 Big-1 (bacterial Ig-like domain 1) domain Eco28_RS00255 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS00255 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS00255 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS00255 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS00255 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS00255 IPR019734 Tetratricopeptide repeat Eco28_RS00255 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS00260 IPR036708 BipD-like superfamily Eco28_RS00260 IPR009483 Type III secretion systems tip complex components Eco28_RS00280 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD Eco28_RS00280 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS00280 IPR011716 Tetratricopeptide TPR-3 Eco28_RS00280 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup Eco28_RS00290 IPR004872 Lipoprotein NlpA family Eco28_RS00295 IPR000620 EamA domain Eco28_RS00295 IPR004779 Carboxylate/Amino Acid/Amine Transporter Eco28_RS00300 IPR011701 Major facilitator superfamily Eco28_RS00300 IPR020846 Major facilitator superfamily domain Eco28_RS00300 IPR036259 MFS transporter superfamily Eco28_RS00300 IPR004750 Sugar efflux Eco28_RS00315 IPR001927 Sodium:galactoside symporter Eco28_RS00315 IPR036259 MFS transporter superfamily Eco28_RS00315 IPR018043 Sodium:galactoside symporter, conserved site Eco28_RS00315 IPR039672 Lactose permease-like Eco28_RS00320 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS00320 IPR000322 Glycoside hydrolase family 31 Eco28_RS00320 IPR017853 Glycoside hydrolase superfamily Eco28_RS00320 IPR025887 Glycoside hydrolase family 31, N-terminal domain Eco28_RS00320 IPR013780 Glycosyl hydrolase, all-beta Eco28_RS00325 IPR007844 AsmA Eco28_RS00330 IPR006042 Xanthine/uracil permease Eco28_RS00330 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS00335 IPR004445 Sodium/glutamate symport carrier protein GltS Eco28_RS00340 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS00340 IPR011545 DEAD/DEAH box helicase domain Eco28_RS00340 IPR004609 ATP-dependent DNA helicase RecG Eco28_RS00340 IPR001650 Helicase, C-terminal Eco28_RS00340 IPR033454 RecG, wedge domain Eco28_RS00340 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS00340 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS00345 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Eco28_RS00345 IPR033671 tRNA (guanosine(18)-2'-O)-methyltransferase Eco28_RS00345 IPR001537 tRNA/rRNA methyltransferase, SpoU type Eco28_RS00345 IPR022724 RNA methyltransferase, SpoU/TrmH type, C-terminal Eco28_RS00345 IPR029028 Alpha/beta knot methyltransferases Eco28_RS00350 IPR033655 RelA, TGS domain Eco28_RS00350 IPR004811 RelA/SpoT family Eco28_RS00350 IPR003607 HD/PDEase domain Eco28_RS00350 IPR012676 TGS-like Eco28_RS00350 IPR004095 TGS Eco28_RS00350 IPR012675 Beta-grasp domain superfamily Eco28_RS00350 IPR002912 ACT domain Eco28_RS00350 IPR007685 RelA/SpoT Eco28_RS00355 IPR006110 RNA polymerase, subunit omega/K/RPB6 Eco28_RS00355 IPR012293 RNA polymerase subunit, RPB6/omega Eco28_RS00355 IPR036161 RPB6/omega subunit-like superfamily Eco28_RS00355 IPR003716 DNA-directed RNA polymerase, omega subunit Eco28_RS00360 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Eco28_RS00360 IPR020590 Guanylate kinase, conserved site Eco28_RS00360 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS00360 IPR008144 Guanylate kinase-like domain Eco28_RS00360 IPR017665 Guanylate kinase Eco28_RS00365 IPR004150 NAD-dependent DNA ligase, OB-fold Eco28_RS00365 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS00365 IPR013840 NAD-dependent DNA ligase, N-terminal Eco28_RS00365 IPR013839 NAD-dependent DNA ligase, adenylation Eco28_RS00365 IPR033136 NAD-dependent DNA ligase, conserved site Eco28_RS00365 IPR020923 DNA ligase B Eco28_RS00365 IPR018239 NAD-dependent DNA ligase, active site Eco28_RS00365 IPR010994 RuvA domain 2-like Eco28_RS00370 IPR005115 Uncharacterised domain UPF0126 Eco28_RS00380 IPR005229 Conserved hypothetical protein CHP00255 Eco28_RS00380 IPR013527 YicC-like, N-terminal Eco28_RS00380 IPR013551 Domain of unknown function DUF1732 Eco28_RS00390 IPR001247 Exoribonuclease, phosphorolytic domain 1 Eco28_RS00390 IPR015847 Exoribonuclease, phosphorolytic domain 2 Eco28_RS00390 IPR018336 Ribonuclease PH, conserved site Eco28_RS00390 IPR002381 Ribonuclease PH, bacterial-type Eco28_RS00390 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS00390 IPR027408 PNPase/RNase PH domain superfamily Eco28_RS00390 IPR036345 Exoribonuclease, PH domain 2 superfamily Eco28_RS00395 IPR029057 Phosphoribosyltransferase-like Eco28_RS00395 IPR000836 Phosphoribosyltransferase domain Eco28_RS00395 IPR023031 Orotate phosphoribosyltransferase Eco28_RS00395 IPR004467 Orotate phosphoribosyl transferase domain Eco28_RS00400 IPR009057 Homeobox-like domain superfamily Eco28_RS00400 IPR023769 Nucleoid occlusion factor SlmA Eco28_RS00400 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS00400 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS00400 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS00405 IPR036157 dUTPase-like superfamily Eco28_RS00405 IPR029054 dUTPase-like Eco28_RS00405 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase Eco28_RS00405 IPR033704 dUTPase, trimeric Eco28_RS00410 IPR003382 Flavoprotein Eco28_RS00410 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal Eco28_RS00410 IPR036551 Flavin prenyltransferase-like Eco28_RS00410 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC Eco28_RS00410 IPR035929 CoaB-like superfamily Eco28_RS00415 IPR001405 Uncharacterised protein family UPF0758 Eco28_RS00415 IPR037518 MPN domain Eco28_RS00415 IPR022820 Uncharacterised protein family UPF0758, YicR subfamily Eco28_RS00415 IPR025657 RadC-like JAB domain Eco28_RS00415 IPR010994 RuvA domain 2-like Eco28_RS00415 IPR020891 Uncharacterised protein family UPF0758, conserved site Eco28_RS00420 IPR026569 Ribosomal protein L28/L24 Eco28_RS00420 IPR037147 Ribosomal protein L28/L24 superfamily Eco28_RS00420 IPR001383 Ribosomal protein L28 Eco28_RS00420 IPR034704 L28p-like Eco28_RS00425 IPR038584 Ribosomal protein L33 superfamily Eco28_RS00425 IPR001705 Ribosomal protein L33 Eco28_RS00425 IPR018264 Ribosomal protein L33, conserved site Eco28_RS00425 IPR011332 Zinc-binding ribosomal protein Eco28_RS00430 IPR010979 Ribosomal protein S13-like, H2TH Eco28_RS00430 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type Eco28_RS00430 IPR020629 Formamidopyrimidine-DNA glycosylase Eco28_RS00430 IPR035937 MutM-like, N-terminal Eco28_RS00430 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain Eco28_RS00430 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding Eco28_RS00430 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site Eco28_RS00430 IPR010663 Zinc finger, FPG/IleRS-type Eco28_RS00435 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS00435 IPR001980 Phosphopantetheine adenylyltransferase Eco28_RS00435 IPR004821 Cytidyltransferase-like domain Eco28_RS00440 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily Eco28_RS00440 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal Eco28_RS00440 IPR039901 3-deoxy-D-manno-octulosonic acid transferase Eco28_RS00445 IPR011916 Lipopolysaccharide heptosyltransferase III, putative Eco28_RS00445 IPR002201 Glycosyl transferase, family 9 Eco28_RS00450 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Eco28_RS00450 IPR001296 Glycosyl transferase, family 1 Eco28_RS00455 IPR011009 Protein kinase-like domain superfamily Eco28_RS00455 IPR017172 Lipopolysaccharide core heptose(I) kinase rfaP Eco28_RS00460 IPR002495 Glycosyl transferase, family 8 Eco28_RS00460 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS00460 IPR013645 Glycosyl transferase, family 8, C-terminal Eco28_RS00465 IPR013645 Glycosyl transferase, family 8, C-terminal Eco28_RS00465 IPR002495 Glycosyl transferase, family 8 Eco28_RS00465 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS00470 IPR009330 Lipopolysaccharide core heptose(II) kinase Eco28_RS00470 IPR011009 Protein kinase-like domain superfamily Eco28_RS00475 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS00475 IPR013645 Glycosyl transferase, family 8, C-terminal Eco28_RS00475 IPR002495 Glycosyl transferase, family 8 Eco28_RS00485 IPR007016 O-antigen ligase-related Eco28_RS00490 IPR011908 Lipopolysaccharide heptosyltransferase I Eco28_RS00490 IPR002201 Glycosyl transferase, family 9 Eco28_RS00495 IPR002201 Glycosyl transferase, family 9 Eco28_RS00495 IPR011910 ADP-heptose--LPS heptosyltransferase 2 Eco28_RS00500 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase Eco28_RS00500 IPR001509 NAD-dependent epimerase/dehydratase Eco28_RS00500 IPR036291 NAD(P)-binding domain superfamily Eco28_RS00505 IPR004839 Aminotransferase, class I/classII Eco28_RS00505 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS00505 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS00505 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS00505 IPR011282 2-amino-3-ketobutyrate coenzyme A ligase Eco28_RS00505 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site Eco28_RS00510 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS00510 IPR036291 NAD(P)-binding domain superfamily Eco28_RS00510 IPR011032 GroES-like superfamily Eco28_RS00510 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS00510 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS00510 IPR004627 L-threonine 3-dehydrogenase Eco28_RS00510 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS00515 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS00515 IPR001173 Glycosyltransferase 2-like Eco28_RS00520 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Eco28_RS00520 IPR006837 Divergent polysaccharide deacetylase Eco28_RS00525 IPR016047 Peptidase M23 Eco28_RS00525 IPR011055 Duplicated hybrid motif Eco28_RS00530 IPR011258 BPG-independent PGAM, N-terminal Eco28_RS00530 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily Eco28_RS00530 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS00530 IPR006124 Metalloenzyme Eco28_RS00530 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent Eco28_RS00540 IPR036873 Rhodanese-like domain superfamily Eco28_RS00540 IPR001763 Rhodanese-like domain Eco28_RS00545 IPR036249 Thioredoxin-like superfamily Eco28_RS00545 IPR011900 Glutaredoxin, GrxC Eco28_RS00545 IPR014025 Glutaredoxin subgroup Eco28_RS00545 IPR002109 Glutaredoxin Eco28_RS00545 IPR011767 Glutaredoxin active site Eco28_RS00550 IPR003708 Bacterial protein export chaperone SecB Eco28_RS00550 IPR035958 SecB-like superfamily Eco28_RS00555 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS00555 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent Eco28_RS00555 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS00555 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal Eco28_RS00555 IPR036291 NAD(P)-binding domain superfamily Eco28_RS00555 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal Eco28_RS00560 IPR011004 Trimeric LpxA-like superfamily Eco28_RS00560 IPR042122 Serine acetyltransferase, N-terminal domain superfamily Eco28_RS00560 IPR018357 Hexapeptide transferase, conserved site Eco28_RS00560 IPR001451 Hexapeptide repeat Eco28_RS00560 IPR005881 Serine O-acetyltransferase Eco28_RS00560 IPR010493 Serine acetyltransferase, N-terminal Eco28_RS00565 IPR029028 Alpha/beta knot methyltransferases Eco28_RS00565 IPR001537 tRNA/rRNA methyltransferase, SpoU type Eco28_RS00565 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase Eco28_RS00565 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Eco28_RS00570 IPR000262 FMN-dependent dehydrogenase Eco28_RS00570 IPR020920 L-lactate dehydrogenase, bacterial Eco28_RS00570 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent Eco28_RS00570 IPR013785 Aldolase-type TIM barrel Eco28_RS00570 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site Eco28_RS00570 IPR037396 FMN hydroxy acid dehydrogenase domain Eco28_RS00575 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS00575 IPR011711 GntR, C-terminal Eco28_RS00575 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS00575 IPR000524 Transcription regulator HTH, GntR Eco28_RS00575 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS00580 IPR003804 L-lactate permease Eco28_RS00595 IPR021658 Domain of unknown function DUF3251 Eco28_RS00595 IPR037125 Lipoprotein YajI-like superfamily Eco28_RS00600 IPR021230 Protein of unknown function DUF2810 Eco28_RS00610 IPR007761 Mannitol repressor MtlR-like Eco28_RS00610 IPR038026 MtlR-like superfamily Eco28_RS00615 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS00615 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS00615 IPR013131 Mannitol dehydrogenase, N-terminal Eco28_RS00615 IPR036291 NAD(P)-binding domain superfamily Eco28_RS00615 IPR000669 Mannitol dehydrogenase Eco28_RS00615 IPR013118 Mannitol dehydrogenase, C-terminal Eco28_RS00615 IPR023028 Mannitol-1-phosphate 5-dehydrogenase Eco28_RS00615 IPR023027 Mannitol dehydrogenase, conserved site Eco28_RS00620 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC Eco28_RS00620 IPR002178 PTS EIIA type-2 domain Eco28_RS00620 IPR016152 Phosphotransferase/anion transporter Eco28_RS00620 IPR036095 PTS system IIB component-like superfamily Eco28_RS00620 IPR013011 Phosphotransferase system, EIIB component, type 2 Eco28_RS00620 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS00620 IPR013014 Phosphotransferase system, EIIC component, type 2 Eco28_RS00620 IPR003352 Phosphotransferase system, EIIC Eco28_RS00620 IPR029503 Phosphotransferase system EIIB component, mannitol-specific Eco28_RS00625 IPR011223 Uncharacterised conserved protein UCP028770 Eco28_RS00630 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS00635 IPR028955 Immunity protein 57 Eco28_RS00640 IPR022385 Rhs repeat-associated core Eco28_RS00640 IPR031325 RHS repeat Eco28_RS00640 IPR001826 RHS protein Eco28_RS00650 IPR028921 NTF2 fold domain Eco28_RS00655 IPR001826 RHS protein Eco28_RS00655 IPR025479 Domain of unknown function DUF4329 Eco28_RS00655 IPR022385 Rhs repeat-associated core Eco28_RS00655 IPR031325 RHS repeat Eco28_RS00655 IPR006530 YD repeat Eco28_RS00660 IPR004046 Glutathione S-transferase, C-terminal Eco28_RS00660 IPR034343 Uncharacterized GST-like protein YibF Eco28_RS00660 IPR036249 Thioredoxin-like superfamily Eco28_RS00660 IPR010987 Glutathione S-transferase, C-terminal-like Eco28_RS00660 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Eco28_RS00660 IPR004045 Glutathione S-transferase, N-terminal Eco28_RS00665 IPR018319 L-seryl-tRNA selenium transferase-like Eco28_RS00665 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS00665 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain Eco28_RS00665 IPR004534 L-seryl-tRNA(Sec) selenium transferase Eco28_RS00665 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS00670 IPR015190 Translation elongation factor SelB, winged helix, type 2 Eco28_RS00670 IPR004535 Translation elongation factor, selenocysteine-specific Eco28_RS00670 IPR004161 Translation elongation factor EFTu-like, domain 2 Eco28_RS00670 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Eco28_RS00670 IPR000795 Transcription factor, GTP-binding domain Eco28_RS00670 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS00670 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS00670 IPR031157 Tr-type G domain, conserved site Eco28_RS00670 IPR015191 Translation elongation factor SelB, winged helix, type 3 Eco28_RS00670 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS00670 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS00675 IPR039697 Iron-type alcohol dehydrogenase-like Eco28_RS00675 IPR018211 Alcohol dehydrogenase, iron-type, conserved site Eco28_RS00675 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA Eco28_RS00685 IPR039697 Iron-type alcohol dehydrogenase-like Eco28_RS00685 IPR018211 Alcohol dehydrogenase, iron-type, conserved site Eco28_RS00685 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA Eco28_RS00695 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Eco28_RS00695 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS00695 IPR015590 Aldehyde dehydrogenase domain Eco28_RS00695 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS00695 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS00695 IPR016160 Aldehyde dehydrogenase, cysteine active site Eco28_RS00705 IPR011223 Uncharacterised conserved protein UCP028770 Eco28_RS00710 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS00715 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS00715 IPR005119 LysR, substrate-binding Eco28_RS00715 IPR000847 Transcription regulator HTH, LysR Eco28_RS00715 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS00720 IPR010583 MltA-interacting MipA Eco28_RS00725 IPR012878 Beta-L-arabinofuranosidase, GH127 Eco28_RS00725 IPR008928 Six-hairpin glycosidase superfamily Eco28_RS00730 IPR039672 Lactose permease-like Eco28_RS00730 IPR001927 Sodium:galactoside symporter Eco28_RS00730 IPR036259 MFS transporter superfamily Eco28_RS00730 IPR018043 Sodium:galactoside symporter, conserved site Eco28_RS00740 IPR029016 GAF-like domain superfamily Eco28_RS00740 IPR014757 Transcription regulator IclR, C-terminal Eco28_RS00740 IPR005471 Transcription regulator IclR, N-terminal Eco28_RS00740 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS00740 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS00745 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS00745 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS00750 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS00750 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS00750 IPR004839 Aminotransferase, class I/classII Eco28_RS00755 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Eco28_RS00755 IPR014635 Alpha-amylase, MalS type Eco28_RS00755 IPR017853 Glycoside hydrolase superfamily Eco28_RS00760 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain Eco28_RS00765 IPR018062 HTH domain AraC-type, conserved site Eco28_RS00765 IPR009057 Homeobox-like domain superfamily Eco28_RS00765 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS00765 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS00765 IPR028082 Periplasmic binding protein-like I Eco28_RS00770 IPR001851 ABC transporter, permease Eco28_RS00775 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS00775 IPR003593 AAA+ ATPase domain Eco28_RS00775 IPR013455 ABC transporter, D-xylose, ATP-binding protein Eco28_RS00775 IPR017871 ABC transporter, conserved site Eco28_RS00775 IPR003439 ABC transporter-like Eco28_RS00780 IPR028082 Periplasmic binding protein-like I Eco28_RS00780 IPR025997 Periplasmic binding protein Eco28_RS00780 IPR013456 D-xylose ABC transporter, substrate-binding protein Eco28_RS00785 IPR001998 Xylose isomerase Eco28_RS00785 IPR013452 Xylose isomerase, bacterial-type Eco28_RS00785 IPR036237 Xylose isomerase-like superfamily Eco28_RS00790 IPR018484 Carbohydrate kinase, FGGY, N-terminal Eco28_RS00790 IPR018483 Carbohydrate kinase, FGGY, conserved site Eco28_RS00790 IPR006000 Xylulokinase Eco28_RS00790 IPR018485 Carbohydrate kinase, FGGY, C-terminal Eco28_RS00790 IPR000577 Carbohydrate kinase, FGGY Eco28_RS00795 IPR038972 Inner membrane protein YiaA-like Eco28_RS00795 IPR008024 YiaAB two helix Eco28_RS00800 IPR008024 YiaAB two helix Eco28_RS00800 IPR038972 Inner membrane protein YiaA-like Eco28_RS00805 IPR002656 Acyltransferase 3 Eco28_RS00805 IPR032905 O-acetyltransferase WecH Eco28_RS00810 IPR025728 YsaB-like lipoprotein Eco28_RS00815 IPR006194 Glycine-tRNA synthetase, heterodimeric Eco28_RS00815 IPR002310 Glycine-tRNA ligase, alpha subunit Eco28_RS00820 IPR008909 DALR anticodon binding Eco28_RS00820 IPR015944 Glycine-tRNA ligase, beta subunit Eco28_RS00820 IPR006194 Glycine-tRNA synthetase, heterodimeric Eco28_RS00825 IPR000021 Hok/gef cell toxic protein Eco28_RS00825 IPR018084 Hok/gef cell toxic protein, conserved site Eco28_RS00830 IPR019844 Cold-shock (CSD) domain Eco28_RS00830 IPR011129 Cold shock domain Eco28_RS00830 IPR012156 Cold shock, CspA Eco28_RS00830 IPR002059 Cold-shock protein, DNA-binding Eco28_RS00830 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS00835 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS00835 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS00840 IPR021413 Protein of unknown function DUF3053 Eco28_RS00845 IPR036291 NAD(P)-binding domain superfamily Eco28_RS00845 IPR023756 Glyoxylate/hydroxypyruvate reductase B Eco28_RS00845 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Eco28_RS00845 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Eco28_RS00845 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS00850 IPR006665 OmpA-like domain Eco28_RS00850 IPR036737 OmpA-like domain superfamily Eco28_RS00850 IPR006690 Outer membrane protein, OmpA-like, conserved site Eco28_RS00850 IPR006664 Outer membrane protein, bacterial Eco28_RS00850 IPR039567 Glycine zipper domain Eco28_RS00855 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS00855 IPR006656 Molybdopterin oxidoreductase Eco28_RS00855 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS00855 IPR041954 Trimethylamine-N-oxide reductase-like, molybdopterin-binding domain Eco28_RS00855 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase Eco28_RS00855 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS00855 IPR041460 Molybdopterin oxidoreductase, N-terminal Eco28_RS00860 IPR000182 GNAT domain Eco28_RS00860 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS00865 IPR004597 DNA-3-methyladenine glycosylase I Eco28_RS00865 IPR011257 DNA glycosylase Eco28_RS00865 IPR005019 Methyladenine glycosylase Eco28_RS00870 IPR036709 Autotransporter beta-domain superfamily Eco28_RS00870 IPR006315 Outer membrane autotransporter barrel Eco28_RS00870 IPR016955 Autotransporter, YhjY, predicted Eco28_RS00870 IPR005546 Autotransporter beta-domain Eco28_RS00880 IPR020846 Major facilitator superfamily domain Eco28_RS00880 IPR036259 MFS transporter superfamily Eco28_RS00880 IPR004741 Oxalate/formate antiporter family transporter Eco28_RS00880 IPR011701 Major facilitator superfamily Eco28_RS00885 IPR000259 Fimbrial-type adhesion domain Eco28_RS00885 IPR008966 Adhesion domain superfamily Eco28_RS00885 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS00890 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS00890 IPR013783 Immunoglobulin-like fold Eco28_RS00890 IPR018046 Pili assembly chaperone, conserved site Eco28_RS00890 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS00890 IPR008962 PapD-like superfamily Eco28_RS00890 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS00890 IPR001829 Pili assembly chaperone, bacterial Eco28_RS00895 IPR037224 PapC, N-terminal domain superfamily Eco28_RS00895 IPR000015 Outer membrane usher protein Eco28_RS00895 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS00895 IPR025949 PapC-like, C-terminal domain Eco28_RS00895 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS00895 IPR025885 PapC, N-terminal domain Eco28_RS00900 IPR008966 Adhesion domain superfamily Eco28_RS00900 IPR000259 Fimbrial-type adhesion domain Eco28_RS00900 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS00905 IPR008966 Adhesion domain superfamily Eco28_RS00905 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS00905 IPR000259 Fimbrial-type adhesion domain Eco28_RS00910 IPR040423 Phosphoethanolamine transferase Eco28_RS00910 IPR012549 Phosphoethanolamine transferase, N-terminal Eco28_RS00910 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS00910 IPR000917 Sulfatase, N-terminal Eco28_RS00925 IPR030678 Peptide/nickel binding protein, MppA-type Eco28_RS00925 IPR039424 Solute-binding protein family 5 Eco28_RS00925 IPR023765 Solute-binding protein family 5, conserved site Eco28_RS00925 IPR000914 Solute-binding protein family 5 domain Eco28_RS00935 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS00935 IPR035906 MetI-like superfamily Eco28_RS00940 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS00940 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Eco28_RS00940 IPR035906 MetI-like superfamily Eco28_RS00945 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Eco28_RS00945 IPR003593 AAA+ ATPase domain Eco28_RS00945 IPR017871 ABC transporter, conserved site Eco28_RS00945 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS00945 IPR003439 ABC transporter-like Eco28_RS00950 IPR017871 ABC transporter, conserved site Eco28_RS00950 IPR003439 ABC transporter-like Eco28_RS00950 IPR003593 AAA+ ATPase domain Eco28_RS00950 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Eco28_RS00950 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS00955 IPR018227 Amino acid/polyamine transporter 2 Eco28_RS00965 IPR025253 Type I toxin-antitoxin system, toxin Ldr Eco28_RS00975 IPR025253 Type I toxin-antitoxin system, toxin Ldr Eco28_RS00985 IPR025253 Type I toxin-antitoxin system, toxin Ldr Eco28_RS00990 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS00990 IPR017744 Cellulose biosynthesis protein BcsG Eco28_RS00995 IPR019995 Cellulose biosynthesis, BcsF/YhjT Eco28_RS01000 IPR017745 Cellulose biosynthesis protein BcsE Eco28_RS01005 IPR024487 Protein YhjR Eco28_RS01010 IPR017746 Cellulose synthase operon protein BcsQ Eco28_RS01010 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01015 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS01015 IPR005150 Cellulose synthase Eco28_RS01015 IPR003919 Cellulose synthase, subunit A Eco28_RS01015 IPR001173 Glycosyltransferase 2-like Eco28_RS01015 IPR009875 PilZ domain Eco28_RS01020 IPR003920 Cellulose synthase, subunit B Eco28_RS01020 IPR018513 Cellulose synthase BcsB, bacterial Eco28_RS01020 IPR008979 Galactose-binding-like domain superfamily Eco28_RS01025 IPR019834 Glycoside hydrolase, family 8, conserved site Eco28_RS01025 IPR002037 Glycoside hydrolase, family 8 Eco28_RS01025 IPR012341 Six-hairpin glycosidase-like superfamily Eco28_RS01025 IPR008928 Six-hairpin glycosidase superfamily Eco28_RS01030 IPR019734 Tetratricopeptide repeat Eco28_RS01030 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS01030 IPR008410 Cellulose synthase operon C, C-terminal Eco28_RS01030 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS01035 IPR029787 Nucleotide cyclase Eco28_RS01035 IPR000160 GGDEF domain Eco28_RS01035 IPR033419 Gammaproteobacterial periplasmic sensor domain GAPES3 Eco28_RS01035 IPR035919 EAL domain superfamily Eco28_RS01035 IPR001633 EAL domain Eco28_RS01035 IPR003660 HAMP domain Eco28_RS01045 IPR036458 Sodium:dicarboxylate symporter superfamily Eco28_RS01045 IPR018107 Sodium:dicarboxylate symporter, conserved site Eco28_RS01045 IPR001991 Sodium:dicarboxylate symporter Eco28_RS01045 IPR023954 C4-dicarboxylate transport protein Eco28_RS01055 IPR007863 Peptidase M16, C-terminal Eco28_RS01055 IPR011765 Peptidase M16, N-terminal Eco28_RS01055 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like Eco28_RS01060 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS01060 IPR011611 Carbohydrate kinase PfkB Eco28_RS01060 IPR029056 Ribokinase-like Eco28_RS01070 IPR035919 EAL domain superfamily Eco28_RS01070 IPR001633 EAL domain Eco28_RS01075 IPR007844 AsmA Eco28_RS01080 IPR005829 Sugar transporter, conserved site Eco28_RS01080 IPR011701 Major facilitator superfamily Eco28_RS01080 IPR004736 MFS transporter, metabolite:H symporter Eco28_RS01080 IPR036259 MFS transporter superfamily Eco28_RS01080 IPR005828 Major facilitator, sugar transporter-like Eco28_RS01080 IPR020846 Major facilitator superfamily domain Eco28_RS01085 IPR005274 Inner membrane protein YhjD Eco28_RS01085 IPR017039 Virulence factor BrkB Eco28_RS01090 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS01090 IPR000847 Transcription regulator HTH, LysR Eco28_RS01090 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01090 IPR005119 LysR, substrate-binding Eco28_RS01095 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS01095 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS01100 IPR023715 Trehalase, cytoplasmic Eco28_RS01100 IPR012341 Six-hairpin glycosidase-like superfamily Eco28_RS01100 IPR008928 Six-hairpin glycosidase superfamily Eco28_RS01100 IPR001661 Glycoside hydrolase, family 37 Eco28_RS01100 IPR018232 Glycoside hydrolase, family 37, conserved site Eco28_RS01105 IPR004852 Di-haem cytochrome c peroxidase Eco28_RS01105 IPR036909 Cytochrome c-like domain superfamily Eco28_RS01105 IPR009056 Cytochrome c-like domain Eco28_RS01105 IPR025992 Haem-binding domain Eco28_RS01110 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS01110 IPR021115 Pyridoxal-phosphate binding site Eco28_RS01110 IPR010107 Glutamate decarboxylase Eco28_RS01110 IPR002129 Pyridoxal phosphate-dependent decarboxylase Eco28_RS01110 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS01115 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS01115 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS01115 IPR009057 Homeobox-like domain superfamily Eco28_RS01115 IPR018062 HTH domain AraC-type, conserved site Eco28_RS01120 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS01120 IPR009057 Homeobox-like domain superfamily Eco28_RS01120 IPR018062 HTH domain AraC-type, conserved site Eco28_RS01120 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS01130 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Eco28_RS01130 IPR001036 Acriflavin resistance protein Eco28_RS01130 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 Eco28_RS01135 IPR006143 RND efflux pump, membrane fusion protein Eco28_RS01135 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS01145 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS01145 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS01145 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01150 IPR005325 Protein of unknown function DUF308, membrane Eco28_RS01155 IPR036831 HNS-dependent expression A superfamily Eco28_RS01155 IPR024972 HNS-dependent expression A Eco28_RS01155 IPR038303 HNS-dependent expression A/B superfamily Eco28_RS01155 IPR010486 HNS-dependent expression A/B Eco28_RS01160 IPR038303 HNS-dependent expression A/B superfamily Eco28_RS01160 IPR010486 HNS-dependent expression A/B Eco28_RS01160 IPR028623 HNS-dependent expression B Eco28_RS01165 IPR003416 MgtC/SapB/SrpB/YhiD family Eco28_RS01170 IPR017871 ABC transporter, conserved site Eco28_RS01170 IPR003593 AAA+ ATPase domain Eco28_RS01170 IPR003439 ABC transporter-like Eco28_RS01170 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01170 IPR015863 ABC transporter, hemin import, HmuV Eco28_RS01175 IPR037294 ABC transporter, BtuC-like Eco28_RS01175 IPR000522 ABC transporter, permease protein, BtuC-like Eco28_RS01190 IPR002491 ABC transporter periplasmic binding domain Eco28_RS01200 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor Eco28_RS01200 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS01200 IPR010916 TonB box, conserved site Eco28_RS01200 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS01200 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS01200 IPR039426 Vitamin B12 transporter BtuB-like Eco28_RS01200 IPR012910 TonB-dependent receptor, plug domain Eco28_RS01200 IPR011276 TonB-dependent haem/haemoglobin receptor Eco28_RS01205 IPR007845 Haemin-degrading HemS/ChuX domain Eco28_RS01210 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS01210 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS01210 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01220 IPR004658 Outer membrane lipoprotein Slp Eco28_RS01235 IPR006659 Arsenate reductase Eco28_RS01235 IPR006660 Arsenate reductase-like Eco28_RS01235 IPR036249 Thioredoxin-like superfamily Eco28_RS01250 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS01250 IPR023753 FAD/NAD(P)-binding domain Eco28_RS01250 IPR006322 Glutathione reductase, eukaryote/bacterial Eco28_RS01250 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Eco28_RS01250 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Eco28_RS01250 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site Eco28_RS01250 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Eco28_RS01255 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS01255 IPR007473 Ribosomal RNA large subunit methyltransferase J Eco28_RS01255 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS01260 IPR001567 Peptidase M3A/M3B catalytic domain Eco28_RS01260 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 Eco28_RS01265 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS01265 IPR007536 Ribosomal RNA small subunit methyltransferase J Eco28_RS01270 IPR013785 Aldolase-type TIM barrel Eco28_RS01270 IPR000056 Ribulose-phosphate 3-epimerase-like Eco28_RS01270 IPR011060 Ribulose-phosphate binding barrel Eco28_RS01270 IPR026019 Ribulose-phosphate 3-epimerase Eco28_RS01275 IPR001347 Sugar isomerase (SIS) Eco28_RS01275 IPR017552 3-hexulose-6-phosphate isomerase Eco28_RS01280 IPR036412 HAD-like superfamily Eco28_RS01280 IPR006439 HAD hydrolase, subfamily IA Eco28_RS01280 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS01280 IPR023214 HAD superfamily Eco28_RS01280 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Eco28_RS01285 IPR016205 Glycerol dehydrogenase Eco28_RS01285 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA Eco28_RS01285 IPR018211 Alcohol dehydrogenase, iron-type, conserved site Eco28_RS01290 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Eco28_RS01290 IPR002178 PTS EIIA type-2 domain Eco28_RS01290 IPR016152 Phosphotransferase/anion transporter Eco28_RS01290 IPR016258 Multiphosphoryl transfer protein FruB Eco28_RS01290 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Eco28_RS01290 IPR035895 HPr-like superfamily Eco28_RS01290 IPR000032 Phosphocarrier protein HPr-like Eco28_RS01295 IPR036291 NAD(P)-binding domain superfamily Eco28_RS01295 IPR013131 Mannitol dehydrogenase, N-terminal Eco28_RS01295 IPR013118 Mannitol dehydrogenase, C-terminal Eco28_RS01295 IPR000669 Mannitol dehydrogenase Eco28_RS01295 IPR023028 Mannitol-1-phosphate 5-dehydrogenase Eco28_RS01295 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS01295 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS01300 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS01300 IPR014036 DeoR C-terminal sensor domain Eco28_RS01300 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS01300 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01300 IPR001034 DeoR-type HTH domain Eco28_RS01300 IPR037171 NagB/RpiA transferase-like Eco28_RS01305 IPR002178 PTS EIIA type-2 domain Eco28_RS01305 IPR016152 Phosphotransferase/anion transporter Eco28_RS01310 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC Eco28_RS01310 IPR016152 Phosphotransferase/anion transporter Eco28_RS01310 IPR002178 PTS EIIA type-2 domain Eco28_RS01310 IPR013014 Phosphotransferase system, EIIC component, type 2 Eco28_RS01310 IPR036095 PTS system IIB component-like superfamily Eco28_RS01310 IPR003352 Phosphotransferase system, EIIC Eco28_RS01310 IPR029503 Phosphotransferase system EIIB component, mannitol-specific Eco28_RS01310 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS01310 IPR013011 Phosphotransferase system, EIIB component, type 2 Eco28_RS01315 IPR036291 NAD(P)-binding domain superfamily Eco28_RS01315 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS01315 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS01320 IPR000109 Proton-dependent oligopeptide transporter family Eco28_RS01320 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site Eco28_RS01320 IPR005279 Dipeptide/tripeptide permease Eco28_RS01320 IPR023778 Amino acid/peptide transporter family, dipeptide/tripeptide permease B Eco28_RS01320 IPR036259 MFS transporter superfamily Eco28_RS01330 IPR006015 Universal stress protein A family Eco28_RS01330 IPR006016 UspA Eco28_RS01330 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS01335 IPR019598 Universal stress protein B Eco28_RS01340 IPR001204 Phosphate transporter Eco28_RS01345 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like Eco28_RS01345 IPR023166 HI0933-like insert domain superfamily Eco28_RS01345 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS01350 IPR021240 Protein of unknown function DUF2776 Eco28_RS01370 IPR025123 Domain of unknown function DUF4049 Eco28_RS01385 IPR025123 Domain of unknown function DUF4049 Eco28_RS01390 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Eco28_RS01395 IPR003593 AAA+ ATPase domain Eco28_RS01395 IPR000412 ABC-2 transporter Eco28_RS01395 IPR003439 ABC transporter-like Eco28_RS01395 IPR017871 ABC transporter, conserved site Eco28_RS01395 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01400 IPR000412 ABC-2 transporter Eco28_RS01415 IPR002145 Ribbon-helix-helix protein, CopG Eco28_RS01415 IPR013321 Arc-type ribbon-helix-helix Eco28_RS01415 IPR022988 Nickel-responsive transcriptional regulator NikR Eco28_RS01415 IPR010985 Ribbon-helix-helix Eco28_RS01415 IPR014160 Nickel-responsive transcriptional regulator NikR, proteobacteria Eco28_RS01415 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Eco28_RS01415 IPR014864 Transcription factor, NikR, nickel binding C-terminal Eco28_RS01420 IPR017871 ABC transporter, conserved site Eco28_RS01420 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01420 IPR014137 Nickel import ATP-binding protein NikE Eco28_RS01420 IPR015858 ABC transporter, nickel import, NikE Eco28_RS01420 IPR003439 ABC transporter-like Eco28_RS01420 IPR003593 AAA+ ATPase domain Eco28_RS01425 IPR017871 ABC transporter, conserved site Eco28_RS01425 IPR003439 ABC transporter-like Eco28_RS01425 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01425 IPR003593 AAA+ ATPase domain Eco28_RS01425 IPR015857 ABC transporter, nickel import, NikD Eco28_RS01425 IPR014138 Nickel import ATP-binding protein NikD Eco28_RS01430 IPR014157 Nickel ABC transporter, permease subunit NikC Eco28_RS01430 IPR035906 MetI-like superfamily Eco28_RS01430 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS01435 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS01435 IPR014156 Nickel ABC transporter, permease subunit NikB Eco28_RS01435 IPR035906 MetI-like superfamily Eco28_RS01440 IPR023765 Solute-binding protein family 5, conserved site Eco28_RS01440 IPR000914 Solute-binding protein family 5 domain Eco28_RS01440 IPR030678 Peptide/nickel binding protein, MppA-type Eco28_RS01440 IPR039424 Solute-binding protein family 5 Eco28_RS01440 IPR011980 Nickel ABC transporter, substrate-binding protein NikA Eco28_RS01445 IPR037143 4'-phosphopantetheinyl transferase domain superfamily Eco28_RS01445 IPR008278 4'-phosphopantetheinyl transferase domain Eco28_RS01450 IPR014030 Beta-ketoacyl synthase, N-terminal Eco28_RS01450 IPR014031 Beta-ketoacyl synthase, C-terminal Eco28_RS01450 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Eco28_RS01450 IPR018201 Beta-ketoacyl synthase, active site Eco28_RS01450 IPR000794 Beta-ketoacyl synthase Eco28_RS01450 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 Eco28_RS01450 IPR016039 Thiolase-like Eco28_RS01455 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS01455 IPR036291 NAD(P)-binding domain superfamily Eco28_RS01455 IPR011285 3-oxoacyl-(acyl-carrier-protein) reductase, putative Eco28_RS01465 IPR000794 Beta-ketoacyl synthase Eco28_RS01465 IPR016039 Thiolase-like Eco28_RS01465 IPR014031 Beta-ketoacyl synthase, C-terminal Eco28_RS01465 IPR014030 Beta-ketoacyl synthase, N-terminal Eco28_RS01465 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Eco28_RS01465 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 Eco28_RS01465 IPR018201 Beta-ketoacyl synthase, active site Eco28_RS01490 IPR039528 DPM1-like Eco28_RS01490 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS01490 IPR001173 Glycosyltransferase 2-like Eco28_RS01500 IPR001031 Thioesterase Eco28_RS01500 IPR006162 Phosphopantetheine attachment site Eco28_RS01500 IPR009081 Phosphopantetheine binding ACP domain Eco28_RS01500 IPR020806 Polyketide synthase, phosphopantetheine-binding domain Eco28_RS01500 IPR010060 Non-ribosomal peptide synthase Eco28_RS01500 IPR036736 ACP-like superfamily Eco28_RS01500 IPR010071 Amino acid adenylation domain Eco28_RS01500 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS01500 IPR025110 AMP-binding enzyme, C-terminal domain Eco28_RS01500 IPR000873 AMP-dependent synthetase/ligase Eco28_RS01500 IPR001242 Condensation domain Eco28_RS01500 IPR029058 Alpha/Beta hydrolase fold Eco28_RS01500 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Eco28_RS01500 IPR020845 AMP-binding, conserved site Eco28_RS01510 IPR009081 Phosphopantetheine binding ACP domain Eco28_RS01510 IPR036736 ACP-like superfamily Eco28_RS01510 IPR003231 Acyl carrier protein (ACP) Eco28_RS01515 IPR036736 ACP-like superfamily Eco28_RS01515 IPR003231 Acyl carrier protein (ACP) Eco28_RS01515 IPR009081 Phosphopantetheine binding ACP domain Eco28_RS01515 IPR020806 Polyketide synthase, phosphopantetheine-binding domain Eco28_RS01515 IPR006162 Phosphopantetheine attachment site Eco28_RS01520 IPR002123 Phospholipid/glycerol acyltransferase Eco28_RS01520 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase Eco28_RS01530 IPR016461 O-methyltransferase COMT-type Eco28_RS01530 IPR001077 O-methyltransferase domain Eco28_RS01530 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01530 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS01530 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS01540 IPR002549 Transmembrane protein TqsA-like Eco28_RS01545 IPR036259 MFS transporter superfamily Eco28_RS01545 IPR020846 Major facilitator superfamily domain Eco28_RS01545 IPR023008 Uncharacterized MFS-type transporter YhhS-like Eco28_RS01545 IPR011701 Major facilitator superfamily Eco28_RS01550 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich Eco28_RS01550 IPR014894 Protein DcrB Eco28_RS01555 IPR003744 Queuosine precursor transporter Eco28_RS01560 IPR022931 Sulfur carrier protein TusA Eco28_RS01560 IPR001455 TusA-like domain Eco28_RS01560 IPR036868 TusA-like domain superfamily Eco28_RS01570 IPR006121 Heavy metal-associated domain, HMA Eco28_RS01570 IPR017969 Heavy-metal-associated, conserved site Eco28_RS01570 IPR023299 P-type ATPase, cytoplasmic domain N Eco28_RS01570 IPR018303 P-type ATPase, phosphorylation site Eco28_RS01570 IPR008250 P-type ATPase, A domain superfamily Eco28_RS01570 IPR027256 P-type ATPase, subfamily IB Eco28_RS01570 IPR023298 P-type ATPase, transmembrane domain superfamily Eco28_RS01570 IPR036412 HAD-like superfamily Eco28_RS01570 IPR036163 Heavy metal-associated domain superfamily Eco28_RS01570 IPR023214 HAD superfamily Eco28_RS01570 IPR001757 P-type ATPase Eco28_RS01575 IPR012506 YhhN-like Eco28_RS01580 IPR019635 Protein of unknown function DUF2500 Eco28_RS01585 IPR009525 Protein of unknown function DUF1145 Eco28_RS01590 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS01590 IPR004398 RNA methyltransferase, RsmD Eco28_RS01590 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS01595 IPR013822 Signal recognition particle SRP54, helical bundle Eco28_RS01595 IPR004390 Signal-recognition particle receptor FtsY Eco28_RS01595 IPR036225 SRP/SRP receptor, N-terminal Eco28_RS01595 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01595 IPR003593 AAA+ ATPase domain Eco28_RS01595 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily Eco28_RS01595 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain Eco28_RS01600 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01600 IPR005286 Cell division protein FtsE, ATP-binding Eco28_RS01600 IPR017871 ABC transporter, conserved site Eco28_RS01600 IPR003439 ABC transporter-like Eco28_RS01600 IPR003593 AAA+ ATPase domain Eco28_RS01605 IPR003838 ABC transporter permease protein domain Eco28_RS01605 IPR004513 Cell division protein FtsX Eco28_RS01605 IPR040690 FtsX, extracellular domain Eco28_RS01610 IPR007630 RNA polymerase sigma-70 region 4 Eco28_RS01610 IPR013324 RNA polymerase sigma factor, region 3/4-like Eco28_RS01610 IPR007627 RNA polymerase sigma-70 region 2 Eco28_RS01610 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria Eco28_RS01610 IPR014284 RNA polymerase sigma-70 like domain Eco28_RS01610 IPR013325 RNA polymerase sigma factor, region 2 Eco28_RS01610 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01610 IPR000943 RNA polymerase sigma-70 Eco28_RS01615 IPR000709 Leu/Ile/Val-binding protein Eco28_RS01615 IPR028081 Leucine-binding protein domain Eco28_RS01615 IPR028082 Periplasmic binding protein-like I Eco28_RS01630 IPR000182 GNAT domain Eco28_RS01630 IPR040448 PanZ, acetyltransferase (GNAT) domain Eco28_RS01630 IPR032900 PanD regulatory factor PanZ Eco28_RS01630 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS01640 IPR028081 Leucine-binding protein domain Eco28_RS01640 IPR000709 Leu/Ile/Val-binding protein Eco28_RS01640 IPR028082 Periplasmic binding protein-like I Eco28_RS01645 IPR001851 ABC transporter, permease Eco28_RS01650 IPR001851 ABC transporter, permease Eco28_RS01650 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal Eco28_RS01655 IPR003439 ABC transporter-like Eco28_RS01655 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01655 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Eco28_RS01655 IPR003593 AAA+ ATPase domain Eco28_RS01655 IPR017871 ABC transporter, conserved site Eco28_RS01660 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein Eco28_RS01660 IPR003439 ABC transporter-like Eco28_RS01660 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01660 IPR017871 ABC transporter, conserved site Eco28_RS01660 IPR003593 AAA+ ATPase domain Eco28_RS01670 IPR006061 Solute-binding family 1, conserved site Eco28_RS01670 IPR006059 Bacterial extracellular solute-binding protein Eco28_RS01675 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS01675 IPR035906 MetI-like superfamily Eco28_RS01680 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS01680 IPR030165 sn-Glycerol-3-phosphate transport system permease protein UgpE Eco28_RS01680 IPR035906 MetI-like superfamily Eco28_RS01685 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS01685 IPR017922 sn-Glycerol-3-phosphate import ATP-binding protein UgpC Eco28_RS01685 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01685 IPR040582 MalK, OB fold domain Eco28_RS01685 IPR017871 ABC transporter, conserved site Eco28_RS01685 IPR003439 ABC transporter-like Eco28_RS01685 IPR003593 AAA+ ATPase domain Eco28_RS01690 IPR030395 Glycerophosphodiester phosphodiesterase domain Eco28_RS01690 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily Eco28_RS01695 IPR020158 Protein of unknown function DUF2756 Eco28_RS01700 IPR029055 Nucleophile aminohydrolases, N-terminal Eco28_RS01700 IPR000101 Gamma-glutamyltranspeptidase Eco28_RS01715 IPR000182 GNAT domain Eco28_RS01715 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS01725 IPR004104 Oxidoreductase, C-terminal Eco28_RS01725 IPR000683 Oxidoreductase, N-terminal Eco28_RS01725 IPR036291 NAD(P)-binding domain superfamily Eco28_RS01730 IPR003829 Pirin, N-terminal domain Eco28_RS01730 IPR012093 Pirin Eco28_RS01730 IPR014710 RmlC-like jelly roll fold Eco28_RS01730 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain Eco28_RS01730 IPR011051 RmlC-like cupin domain superfamily Eco28_RS01735 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS01735 IPR001761 Periplasmic binding protein/LacI sugar binding domain Eco28_RS01735 IPR028082 Periplasmic binding protein-like I Eco28_RS01735 IPR000843 LacI-type HTH domain Eco28_RS01740 IPR031322 Shikimate kinase/gluconokinase Eco28_RS01740 IPR006001 Carbohydrate kinase, thermoresistant glucokinase Eco28_RS01740 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01745 IPR003474 Gluconate transporter Eco28_RS01750 IPR018982 RQC domain Eco28_RS01750 IPR002121 HRDC domain Eco28_RS01750 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01750 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain Eco28_RS01750 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01750 IPR004589 DNA helicase, ATP-dependent, RecQ type Eco28_RS01750 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS01750 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial Eco28_RS01750 IPR010997 HRDC-like superfamily Eco28_RS01750 IPR011545 DEAD/DEAH box helicase domain Eco28_RS01750 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS01750 IPR001650 Helicase, C-terminal Eco28_RS01760 IPR002771 Multiple antibiotic resistance (MarC)-related Eco28_RS01765 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type Eco28_RS01765 IPR012280 Semialdehyde dehydrogenase, dimerisation domain Eco28_RS01765 IPR000534 Semialdehyde dehydrogenase, NAD-binding Eco28_RS01765 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site Eco28_RS01765 IPR036291 NAD(P)-binding domain superfamily Eco28_RS01765 IPR012080 Aspartate-semialdehyde dehydrogenase Eco28_RS01770 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB Eco28_RS01770 IPR037439 1,4-alpha-glucan-branching enzyme Eco28_RS01770 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta Eco28_RS01770 IPR013780 Glycosyl hydrolase, all-beta Eco28_RS01770 IPR014756 Immunoglobulin E-set Eco28_RS01770 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Eco28_RS01770 IPR004193 Glycoside hydrolase, family 13, N-terminal Eco28_RS01770 IPR013783 Immunoglobulin-like fold Eco28_RS01770 IPR017853 Glycoside hydrolase superfamily Eco28_RS01775 IPR014756 Immunoglobulin E-set Eco28_RS01775 IPR013783 Immunoglobulin-like fold Eco28_RS01775 IPR017853 Glycoside hydrolase superfamily Eco28_RS01775 IPR011837 Glycogen debranching enzyme, GlgX type Eco28_RS01775 IPR004193 Glycoside hydrolase, family 13, N-terminal Eco28_RS01775 IPR022844 Glycogen debranching enzyme, bacterial Eco28_RS01775 IPR013780 Glycosyl hydrolase, all-beta Eco28_RS01775 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Eco28_RS01775 IPR040784 Glycogen debranching enzyme, C-terminal domain Eco28_RS01780 IPR011831 Glucose-1-phosphate adenylyltransferase Eco28_RS01780 IPR005836 ADP-glucose pyrophosphorylase, conserved site Eco28_RS01780 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial Eco28_RS01780 IPR005835 Nucleotidyl transferase domain Eco28_RS01780 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS01780 IPR011004 Trimeric LpxA-like superfamily Eco28_RS01785 IPR011835 Bacterial/plant glycogen synthase Eco28_RS01785 IPR013534 Starch synthase, catalytic domain Eco28_RS01785 IPR001296 Glycosyl transferase, family 1 Eco28_RS01790 IPR000811 Glycosyl transferase, family 35 Eco28_RS01790 IPR035090 Phosphorylase pyridoxal-phosphate attachment site Eco28_RS01790 IPR011833 Glycogen/starch/alpha-glucan phosphorylase Eco28_RS01825 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS01825 IPR006076 FAD dependent oxidoreductase Eco28_RS01825 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily Eco28_RS01825 IPR031656 Alpha-glycerophosphate oxidase, C-terminal Eco28_RS01825 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase Eco28_RS01830 IPR001763 Rhodanese-like domain Eco28_RS01830 IPR036873 Rhodanese-like domain superfamily Eco28_RS01830 IPR023695 Thiosulfate sulfurtransferase, bacterial Eco28_RS01835 IPR022732 Peptidase S54, GlpG peptidase, N-terminal Eco28_RS01835 IPR038236 GlpG peptidase, N-terminal domain superfamily Eco28_RS01835 IPR023662 Rhomboid protease GlpG Eco28_RS01835 IPR022764 Peptidase S54, rhomboid domain Eco28_RS01835 IPR035952 Rhomboid-like superfamily Eco28_RS01840 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS01840 IPR014036 DeoR C-terminal sensor domain Eco28_RS01840 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01840 IPR037171 NagB/RpiA transferase-like Eco28_RS01840 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS01840 IPR001034 DeoR-type HTH domain Eco28_RS01845 IPR003593 AAA+ ATPase domain Eco28_RS01845 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS01845 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01845 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS01845 IPR017183 Sigma54-dependent transcriptional activator, RtcR Eco28_RS01845 IPR009715 Regulator of RNA terminal phosphate cyclase Eco28_RS01855 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01855 IPR009715 Regulator of RNA terminal phosphate cyclase Eco28_RS01855 IPR003593 AAA+ ATPase domain Eco28_RS01855 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS01855 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS01855 IPR017183 Sigma54-dependent transcriptional activator, RtcR Eco28_RS01860 IPR036025 tRNA-splicing ligase RtcB-like superfamily Eco28_RS01860 IPR001233 tRNA-splicing ligase, RtcB Eco28_RS01865 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Eco28_RS01865 IPR013791 RNA 3'-terminal phosphate cyclase, insert domain Eco28_RS01865 IPR020719 RNA 3'-terminal phosphate cyclase-like, conserved site Eco28_RS01865 IPR023797 RNA 3'-terminal phosphate cyclase domain Eco28_RS01865 IPR037136 RNA 3'-terminal phosphate cyclase domain superfamily Eco28_RS01865 IPR000228 RNA 3'-terminal phosphate cyclase Eco28_RS01865 IPR017770 RNA 3'-terminal phosphate cyclase type 1 Eco28_RS01865 IPR036553 RNA 3'-terminal phosphate cyclase, insert domain superfamily Eco28_RS01870 IPR023768 Transcriptional regulator HTH-type, MalT Eco28_RS01870 IPR041617 MalT-like TPR region Eco28_RS01870 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS01870 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01870 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01870 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS01870 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS01875 IPR000811 Glycosyl transferase, family 35 Eco28_RS01875 IPR035090 Phosphorylase pyridoxal-phosphate attachment site Eco28_RS01875 IPR011833 Glycogen/starch/alpha-glucan phosphorylase Eco28_RS01880 IPR017853 Glycoside hydrolase superfamily Eco28_RS01880 IPR003385 Glycoside hydrolase, family 77 Eco28_RS01885 IPR003474 Gluconate transporter Eco28_RS01890 IPR017726 Fe/S biogenesis protein NfuA Eco28_RS01890 IPR034904 Fe-S cluster assembly domain superfamily Eco28_RS01890 IPR035903 HesB-like domain superfamily Eco28_RS01890 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal Eco28_RS01890 IPR000361 FeS cluster biogenesis Eco28_RS01895 IPR000836 Phosphoribosyltransferase domain Eco28_RS01895 IPR005222 Competence protein ComF Eco28_RS01895 IPR029057 Phosphoribosyltransferase-like Eco28_RS01900 IPR000073 Alpha/beta hydrolase fold-1 Eco28_RS01900 IPR010076 Pimeloyl-[acyl-carrier protein] methyl ester esterase Eco28_RS01900 IPR029058 Alpha/Beta hydrolase fold Eco28_RS01905 IPR006842 Transposase (putative), YhgA-like Eco28_RS01905 IPR010106 Recombination-promoting nuclease RpnA Eco28_RS01915 IPR015102 Transcriptional regulator HTH-type, FeoC Eco28_RS01915 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS01915 IPR023732 Probable [Fe-S]-dependent transcriptional repressor Eco28_RS01915 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01920 IPR003373 Ferrous iron transport protein B Eco28_RS01920 IPR041069 FeoB, cytosolic helical domain Eco28_RS01920 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS01920 IPR030389 FeoB-type guanine nucleotide-binding (G) domain Eco28_RS01920 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Eco28_RS01920 IPR011640 Ferrous iron transport protein B, C-terminal Eco28_RS01925 IPR038157 Ferrous iron transporter, core domain Eco28_RS01925 IPR007167 Ferrous iron transporter FeoA domain Eco28_RS01925 IPR008988 Transcriptional repressor, C-terminal Eco28_RS01935 IPR032639 Tex protein, YqgF-like domain Eco28_RS01935 IPR037027 YqgF/RNase H-like domain superfamily Eco28_RS01935 IPR006641 YqgF/RNase H-like domain Eco28_RS01935 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS01935 IPR018974 Tex-like protein, N-terminal Eco28_RS01935 IPR023319 Tex-like protein, HTH domain superfamily Eco28_RS01935 IPR023323 Tex-like domain superfamily Eco28_RS01935 IPR012337 Ribonuclease H-like superfamily Eco28_RS01935 IPR003029 S1 domain Eco28_RS01935 IPR022967 RNA-binding domain, S1 Eco28_RS01935 IPR010994 RuvA domain 2-like Eco28_RS01935 IPR041692 HHH domain 9 Eco28_RS01940 IPR018151 Transcription elongation factor, GreA/GreB, conserved site Eco28_RS01940 IPR006358 Transcription elongation factor GreB Eco28_RS01940 IPR023459 Transcription elongation factor GreA/GreB family Eco28_RS01940 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily Eco28_RS01940 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal Eco28_RS01940 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily Eco28_RS01940 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal Eco28_RS01940 IPR028624 Transcription elongation factor GreA/GreB Eco28_RS01950 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS01950 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS01950 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS01950 IPR011006 CheY-like superfamily Eco28_RS01950 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS01950 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS01955 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS01955 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS01955 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS01955 IPR003660 HAMP domain Eco28_RS01955 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS01955 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS01955 IPR005467 Histidine kinase domain Eco28_RS01960 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site Eco28_RS01960 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising Eco28_RS01960 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal Eco28_RS01960 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal Eco28_RS01970 IPR025291 Protein of unknown function DUF4153 Eco28_RS01975 IPR016153 Heat shock protein Hsp33, N-terminal Eco28_RS01975 IPR016154 Heat shock protein Hsp33, C-terminal Eco28_RS01975 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain superfamily Eco28_RS01975 IPR000397 Heat shock protein Hsp33 Eco28_RS01980 IPR025708 Heat shock protein 15 Eco28_RS01980 IPR036986 RNA-binding S4 domain superfamily Eco28_RS01980 IPR002942 RNA-binding S4 domain Eco28_RS01985 IPR036412 HAD-like superfamily Eco28_RS01985 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS01985 IPR023214 HAD superfamily Eco28_RS01985 IPR006439 HAD hydrolase, subfamily IA Eco28_RS01990 IPR010771 Intracellular growth attenuator IgaA Eco28_RS01995 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS01995 IPR020084 NUDIX hydrolase, conserved site Eco28_RS01995 IPR000086 NUDIX hydrolase domain Eco28_RS02000 IPR036950 Penicillin binding protein transglycosylase domain Eco28_RS02000 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS02000 IPR001264 Glycosyl transferase, family 51 Eco28_RS02000 IPR023346 Lysozyme-like domain superfamily Eco28_RS02000 IPR031376 Penicillin-binding protein, OB-like domain Eco28_RS02000 IPR001460 Penicillin-binding protein, transpeptidase Eco28_RS02010 IPR007813 Fimbrial assembly PilN Eco28_RS02020 IPR019684 HofP protein Eco28_RS02025 IPR013355 Type IV pilus secretin PilQ Eco28_RS02025 IPR004846 Type II/III secretion system Eco28_RS02025 IPR001775 GspD/PilQ family Eco28_RS02025 IPR005644 NolW-like Eco28_RS02025 IPR011662 Secretin/TonB, short N-terminal domain Eco28_RS02025 IPR038591 NolW-like superfamily Eco28_RS02025 IPR004845 Type II secretion system GspD, conserved site Eco28_RS02030 IPR023000 Shikimate kinase, conserved site Eco28_RS02030 IPR000623 Shikimate kinase/Threonine synthase-like 1 Eco28_RS02030 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02030 IPR031322 Shikimate kinase/gluconokinase Eco28_RS02035 IPR016037 3-dehydroquinate synthase AroB Eco28_RS02035 IPR030960 3-dehydroquinate synthase domain Eco28_RS02035 IPR030963 3-dehydroquinate synthase family Eco28_RS02040 IPR036680 Sporulation-like domain superfamily Eco28_RS02040 IPR032899 Cell division protein DamX Eco28_RS02040 IPR007730 Sporulation-like domain Eco28_RS02045 IPR012327 D12 class N6 adenine-specific DNA methyltransferase Eco28_RS02045 IPR012263 Adenine modification methylase, M.EcoRV-type Eco28_RS02045 IPR023095 Adenine-specific methyltransferase, domain 2 Eco28_RS02045 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS02045 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS02050 IPR026019 Ribulose-phosphate 3-epimerase Eco28_RS02050 IPR011060 Ribulose-phosphate binding barrel Eco28_RS02050 IPR000056 Ribulose-phosphate 3-epimerase-like Eco28_RS02050 IPR013785 Aldolase-type TIM barrel Eco28_RS02055 IPR036412 HAD-like superfamily Eco28_RS02055 IPR006346 2-phosphoglycolate phosphatase-like, prokaryotic Eco28_RS02055 IPR037512 Phosphoglycolate phosphatase, prokaryotic Eco28_RS02055 IPR006439 HAD hydrolase, subfamily IA Eco28_RS02055 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Eco28_RS02055 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS02055 IPR023214 HAD superfamily Eco28_RS02060 IPR002305 Aminoacyl-tRNA synthetase, class Ic Eco28_RS02060 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS02060 IPR002306 Tryptophan-tRNA ligase Eco28_RS02060 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Eco28_RS02060 IPR024109 Tryptophan-tRNA ligase, bacterial-type Eco28_RS02065 IPR011663 UbiC transcription regulator-associated Eco28_RS02065 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS02065 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Eco28_RS02065 IPR000524 Transcription regulator HTH, GntR Eco28_RS02065 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS02070 IPR029056 Ribokinase-like Eco28_RS02070 IPR011611 Carbohydrate kinase PfkB Eco28_RS02070 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS02075 IPR036237 Xylose isomerase-like superfamily Eco28_RS02075 IPR013022 Xylose isomerase-like, TIM barrel domain Eco28_RS02085 IPR001347 Sugar isomerase (SIS) Eco28_RS02085 IPR035490 GlmS/FrlB, SIS domain 2 Eco28_RS02090 IPR002293 Amino acid/polyamine transporter I Eco28_RS02095 IPR025318 Protein of unknown function DUF4223 Eco28_RS02100 IPR000878 Tetrapyrrole methylase Eco28_RS02100 IPR006367 Sirohaem synthase, N-terminal Eco28_RS02100 IPR019478 Sirohaem synthase, dimerisation domain Eco28_RS02100 IPR028281 Siroheme synthase, central domain Eco28_RS02100 IPR012409 Sirohaem synthase Eco28_RS02100 IPR036291 NAD(P)-binding domain superfamily Eco28_RS02100 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site Eco28_RS02100 IPR037115 Sirohaem synthase, dimerisation domain superfamily Eco28_RS02100 IPR006366 Uroporphyrin-III C-methyltransferase Eco28_RS02100 IPR014776 Tetrapyrrole methylase, subdomain 2 Eco28_RS02100 IPR014777 Tetrapyrrole methylase, subdomain 1 Eco28_RS02100 IPR035996 Tetrapyrrole methylase superfamily Eco28_RS02105 IPR023271 Aquaporin-like Eco28_RS02105 IPR024002 Formate/nitrite transporter, conserved site Eco28_RS02105 IPR000292 Formate/nitrite transporter Eco28_RS02110 IPR017881 Nitrite reductase (NADH) small subunit Eco28_RS02110 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type Eco28_RS02110 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily Eco28_RS02115 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal Eco28_RS02115 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site Eco28_RS02115 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain Eco28_RS02115 IPR007419 BFD-like [2Fe-2S]-binding domain Eco28_RS02115 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain Eco28_RS02115 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB Eco28_RS02115 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily Eco28_RS02115 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS02115 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily Eco28_RS02115 IPR017121 Nitrite reductase [NAD(P)H], large subunit Eco28_RS02115 IPR023753 FAD/NAD(P)-binding domain Eco28_RS02120 IPR023528 Major facilitator superfamily transporter, TsgA Eco28_RS02120 IPR011701 Major facilitator superfamily Eco28_RS02120 IPR036259 MFS transporter superfamily Eco28_RS02120 IPR020846 Major facilitator superfamily domain Eco28_RS02125 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site Eco28_RS02125 IPR029000 Cyclophilin-like domain superfamily Eco28_RS02125 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain Eco28_RS02130 IPR022541 Protein of unknown function DUF2559 Eco28_RS02135 IPR003812 Fido domain Eco28_RS02135 IPR036597 Fido-like domain superfamily Eco28_RS02140 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain Eco28_RS02140 IPR029062 Class I glutamine amidotransferase-like Eco28_RS02140 IPR017926 Glutamine amidotransferase Eco28_RS02145 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS02145 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS02145 IPR005814 Aminotransferase class-III Eco28_RS02145 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS02145 IPR004636 Acetylornithine/Succinylornithine transaminase family Eco28_RS02145 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria Eco28_RS02150 IPR032692 Integral membrane protein YccS, N-terminal Eco28_RS02150 IPR010020 Integral membrane protein, YccS/YhfK Eco28_RS02155 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS02155 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS02155 IPR018335 Transcription regulator HTH, Crp-type, conserved site Eco28_RS02155 IPR014710 RmlC-like jelly roll fold Eco28_RS02155 IPR018490 Cyclic nucleotide-binding-like Eco28_RS02155 IPR018488 Cyclic nucleotide-binding, conserved site Eco28_RS02155 IPR000595 Cyclic nucleotide-binding domain Eco28_RS02155 IPR012318 Crp-type HTH domain Eco28_RS02165 IPR015946 K homology domain-like, alpha/beta Eco28_RS02165 IPR003718 OsmC/Ohr family Eco28_RS02165 IPR036102 OsmC/Ohr superfamily Eco28_RS02170 IPR006082 Phosphoribulokinase Eco28_RS02170 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02170 IPR006083 Phosphoribulokinase/uridine kinase Eco28_RS02175 IPR036685 YehU-like superfamily Eco28_RS02175 IPR010648 Uncharacterised protein family UPF0270 Eco28_RS02180 IPR029058 Alpha/Beta hydrolase fold Eco28_RS02180 IPR000073 Alpha/beta hydrolase fold-1 Eco28_RS02180 IPR000952 AB hydrolase 4, conserved site Eco28_RS02180 IPR012020 AB hydrolase 4 family Eco28_RS02185 IPR003593 AAA+ ATPase domain Eco28_RS02185 IPR032781 ABC-transporter extension domain Eco28_RS02185 IPR003439 ABC transporter-like Eco28_RS02185 IPR017871 ABC transporter, conserved site Eco28_RS02185 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02195 IPR003680 Flavodoxin-like fold Eco28_RS02195 IPR029039 Flavoprotein-like superfamily Eco28_RS02195 IPR023947 Glutathione-regulated potassium-efflux system ancillary protein KefG Eco28_RS02200 IPR004771 K+/H+ exchanger Eco28_RS02200 IPR020884 Glutathione-regulated potassium-efflux system protein KefB Eco28_RS02200 IPR038770 Sodium/solute symporter superfamily Eco28_RS02200 IPR006153 Cation/H+ exchanger Eco28_RS02200 IPR036291 NAD(P)-binding domain superfamily Eco28_RS02200 IPR003148 Regulator of K+ conductance, N-terminal Eco28_RS02205 IPR012658 Conserved hypothetical protein CHP02443 Eco28_RS02210 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Eco28_RS02215 IPR007236 SlyX Eco28_RS02220 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal Eco28_RS02220 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Eco28_RS02220 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily Eco28_RS02225 IPR013559 YheO-like Eco28_RS02225 IPR039446 Transcriptional regulator DauR-like Eco28_RS02225 IPR039445 Transcriptional regulator DauR-like, HTH domain Eco28_RS02230 IPR027396 DsrEFH-like Eco28_RS02230 IPR017463 Sulphur relay, TusD/DsrE Eco28_RS02230 IPR003787 Sulphur relay, DsrE/F-like protein Eco28_RS02235 IPR027396 DsrEFH-like Eco28_RS02235 IPR003787 Sulphur relay, DsrE/F-like protein Eco28_RS02235 IPR037450 Sulphur relay, TusC Eco28_RS02235 IPR017462 Sulphur relay, TusC/DsrF Eco28_RS02240 IPR007215 Sulphur relay, TusB/DsrH Eco28_RS02240 IPR027396 DsrEFH-like Eco28_RS02240 IPR023526 Sulphur relay, TusB Eco28_RS02245 IPR005679 Ribosomal protein S12, bacterial-type Eco28_RS02245 IPR006032 Ribosomal protein S12/S23 Eco28_RS02245 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS02250 IPR000235 Ribosomal protein S5/S7 Eco28_RS02250 IPR023798 Ribosomal protein S7 domain Eco28_RS02250 IPR020606 Ribosomal protein S7, conserved site Eco28_RS02250 IPR005717 Ribosomal protein S7, bacterial/organellar-type Eco28_RS02250 IPR036823 Ribosomal protein S7 domain superfamily Eco28_RS02255 IPR031157 Tr-type G domain, conserved site Eco28_RS02255 IPR000640 Elongation factor EFG, domain V-like Eco28_RS02255 IPR005225 Small GTP-binding protein domain Eco28_RS02255 IPR035649 EFG, domain V Eco28_RS02255 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS02255 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02255 IPR035647 EF-G domain III/V-like Eco28_RS02255 IPR009022 Elongation factor G, domain III Eco28_RS02255 IPR004161 Translation elongation factor EFTu-like, domain 2 Eco28_RS02255 IPR004540 Translation elongation factor EFG/EF2 Eco28_RS02255 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS02255 IPR041095 Elongation Factor G, domain II Eco28_RS02255 IPR000795 Transcription factor, GTP-binding domain Eco28_RS02255 IPR005517 Translation elongation factor EFG/EF2, domain IV Eco28_RS02255 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS02260 IPR031157 Tr-type G domain, conserved site Eco28_RS02260 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02260 IPR005225 Small GTP-binding protein domain Eco28_RS02260 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Eco28_RS02260 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS02260 IPR033720 Elongation factor Tu, domain 2 Eco28_RS02260 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Eco28_RS02260 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle Eco28_RS02260 IPR004161 Translation elongation factor EFTu-like, domain 2 Eco28_RS02260 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain Eco28_RS02260 IPR000795 Transcription factor, GTP-binding domain Eco28_RS02270 IPR007419 BFD-like [2Fe-2S]-binding domain Eco28_RS02270 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily Eco28_RS02275 IPR012347 Ferritin-like Eco28_RS02275 IPR008331 Ferritin/DPS protein domain Eco28_RS02275 IPR009078 Ferritin-like superfamily Eco28_RS02275 IPR009040 Ferritin-like diiron domain Eco28_RS02275 IPR002024 Bacterioferritin Eco28_RS02280 IPR000045 Prepilin type IV endopeptidase, peptidase domain Eco28_RS02280 IPR014032 Peptidase A24A, prepilin type IV, bacterial Eco28_RS02290 IPR018268 Ribosomal protein S10, conserved site Eco28_RS02290 IPR027486 Ribosomal protein S10 domain Eco28_RS02290 IPR036838 Ribosomal protein S10 domain superfamily Eco28_RS02290 IPR001848 Ribosomal protein S10 Eco28_RS02295 IPR019926 Ribosomal protein L3, conserved site Eco28_RS02295 IPR019927 Ribosomal protein L3, bacterial/organelle-type Eco28_RS02295 IPR000597 Ribosomal protein L3 Eco28_RS02295 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS02300 IPR023574 Ribosomal protein L4 domain superfamily Eco28_RS02300 IPR013005 50S ribosomal protein uL4 Eco28_RS02300 IPR002136 Ribosomal protein L4/L1e Eco28_RS02305 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Eco28_RS02305 IPR013025 Ribosomal protein L25/L23 Eco28_RS02305 IPR001014 Ribosomal protein L23/L25, conserved site Eco28_RS02305 IPR012678 Ribosomal protein L23/L15e core domain superfamily Eco28_RS02310 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS02310 IPR008991 Translation protein SH3-like domain superfamily Eco28_RS02310 IPR022666 Ribosomal Proteins L2, RNA binding domain Eco28_RS02310 IPR014726 Ribosomal protein L2, domain 3 Eco28_RS02310 IPR014722 Ribosomal protein L2, domain 2 Eco28_RS02310 IPR002171 Ribosomal protein L2 Eco28_RS02310 IPR005880 Ribosomal protein L2, bacterial/organellar-type Eco28_RS02310 IPR022669 Ribosomal protein L2, C-terminal Eco28_RS02310 IPR022671 Ribosomal protein L2, conserved site Eco28_RS02315 IPR023575 Ribosomal protein S19, superfamily Eco28_RS02315 IPR020934 Ribosomal protein S19 conserved site Eco28_RS02315 IPR005732 Ribosomal protein S19, bacterial-type Eco28_RS02315 IPR002222 Ribosomal protein S19/S15 Eco28_RS02320 IPR036394 Ribosomal protein L22/L17 superfamily Eco28_RS02320 IPR001063 Ribosomal protein L22/L17 Eco28_RS02320 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type Eco28_RS02320 IPR018260 Ribosomal protein L22/L17, conserved site Eco28_RS02325 IPR009019 K homology domain superfamily, prokaryotic type Eco28_RS02325 IPR018280 Ribosomal protein S3, conserved site Eco28_RS02325 IPR036419 Ribosomal protein S3, C-terminal domain superfamily Eco28_RS02325 IPR004087 K Homology domain Eco28_RS02325 IPR015946 K homology domain-like, alpha/beta Eco28_RS02325 IPR004044 K Homology domain, type 2 Eco28_RS02325 IPR005704 Ribosomal protein S3, bacterial-type Eco28_RS02325 IPR001351 Ribosomal protein S3, C-terminal Eco28_RS02330 IPR016180 Ribosomal protein L10e/L16 Eco28_RS02330 IPR036920 Ribosomal protein L10e/L16 superfamily Eco28_RS02330 IPR000114 Ribosomal protein L16 Eco28_RS02330 IPR020798 Ribosomal protein L16, conserved site Eco28_RS02335 IPR018254 Ribosomal protein L29, conserved site Eco28_RS02335 IPR036049 Ribosomal protein L29/L35 superfamily Eco28_RS02335 IPR001854 Ribosomal protein L29/L35 Eco28_RS02340 IPR019979 Ribosomal protein S17, conserved site Eco28_RS02340 IPR000266 Ribosomal protein S17/S11 Eco28_RS02340 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS02340 IPR019984 30S ribosomal protein S17 Eco28_RS02345 IPR036853 Ribosomal protein L14 superfamily Eco28_RS02345 IPR019972 Ribosomal protein L14P, conserved site Eco28_RS02345 IPR005745 Ribosomal protein L14P, bacterial-type Eco28_RS02345 IPR000218 Ribosomal protein L14P Eco28_RS02350 IPR005825 Ribosomal protein L24/L26, conserved site Eco28_RS02350 IPR014722 Ribosomal protein L2, domain 2 Eco28_RS02350 IPR005824 KOW Eco28_RS02350 IPR041988 Ribosomal Protein L26/L24, KOW domain Eco28_RS02350 IPR003256 Ribosomal protein L24 Eco28_RS02350 IPR008991 Translation protein SH3-like domain superfamily Eco28_RS02355 IPR020929 Ribosomal protein L5, conserved site Eco28_RS02355 IPR031309 Ribosomal protein L5, C-terminal Eco28_RS02355 IPR022803 Ribosomal protein L5 domain superfamily Eco28_RS02355 IPR031310 Ribosomal protein L5, N-terminal Eco28_RS02355 IPR002132 Ribosomal protein L5 Eco28_RS02355 IPR020930 Ribosomal protein L5, bacterial-type Eco28_RS02360 IPR018271 Ribosomal protein S14, conserved site Eco28_RS02360 IPR023036 Ribosomal protein S14, bacterial/plastid Eco28_RS02360 IPR001209 Ribosomal protein S14 Eco28_RS02365 IPR000630 Ribosomal protein S8 Eco28_RS02365 IPR035987 Ribosomal protein S8 superfamily Eco28_RS02370 IPR019906 Ribosomal protein L6, bacterial-type Eco28_RS02370 IPR000702 Ribosomal protein L6 Eco28_RS02370 IPR020040 Ribosomal protein L6, alpha-beta domain Eco28_RS02370 IPR002358 Ribosomal protein L6, conserved site Eco28_RS02370 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily Eco28_RS02375 IPR005484 Ribosomal protein L18 Eco28_RS02375 IPR004389 Ribosomal protein L18, bacterial-type Eco28_RS02380 IPR000851 Ribosomal protein S5 Eco28_RS02380 IPR005712 Ribosomal protein S5, bacterial-type Eco28_RS02380 IPR005324 Ribosomal protein S5, C-terminal Eco28_RS02380 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS02380 IPR018192 Ribosomal protein S5, N-terminal, conserved site Eco28_RS02380 IPR013810 Ribosomal protein S5, N-terminal Eco28_RS02380 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS02385 IPR018038 Ribosomal protein L30, conserved site Eco28_RS02385 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Eco28_RS02385 IPR005996 Ribosomal protein L30, bacterial-type Eco28_RS02385 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Eco28_RS02390 IPR036227 Ribosomal L18e/L15P superfamily Eco28_RS02390 IPR021131 Ribosomal protein L18e/L15P Eco28_RS02390 IPR001196 Ribosomal protein L15, conserved site Eco28_RS02390 IPR005749 Ribosomal protein L15, bacterial-type Eco28_RS02390 IPR030878 Ribosomal protein L15 Eco28_RS02395 IPR023201 SecY domain superfamily Eco28_RS02395 IPR030659 SecY conserved site Eco28_RS02395 IPR002208 SecY/SEC61-alpha family Eco28_RS02395 IPR026593 Protein translocase subunit SecY Eco28_RS02400 IPR000473 Ribosomal protein L36 Eco28_RS02400 IPR035977 Ribosomal protein L36 superfamily Eco28_RS02405 IPR018269 Ribosomal protein S13, conserved site Eco28_RS02405 IPR001892 Ribosomal protein S13 Eco28_RS02405 IPR019980 Ribosomal protein S13, bacterial-type Eco28_RS02405 IPR010979 Ribosomal protein S13-like, H2TH Eco28_RS02405 IPR027437 30s ribosomal protein S13, C-terminal Eco28_RS02410 IPR019981 Ribosomal protein S11, bacterial-type Eco28_RS02410 IPR018102 Ribosomal S11, conserved site Eco28_RS02410 IPR036967 Ribosomal protein S11 superfamily Eco28_RS02410 IPR001971 Ribosomal protein S11 Eco28_RS02415 IPR002942 RNA-binding S4 domain Eco28_RS02415 IPR001912 Ribosomal protein S4/S9, N-terminal Eco28_RS02415 IPR005709 Ribosomal protein S4, bacterial-type Eco28_RS02415 IPR018079 Ribosomal protein S4, conserved site Eco28_RS02415 IPR022801 Ribosomal protein S4/S9 Eco28_RS02415 IPR036986 RNA-binding S4 domain superfamily Eco28_RS02420 IPR036643 DNA-directed RNA polymerase, insert domain superfamily Eco28_RS02420 IPR011773 DNA-directed RNA polymerase, alpha subunit Eco28_RS02420 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type Eco28_RS02420 IPR011262 DNA-directed RNA polymerase, insert domain Eco28_RS02420 IPR036603 RNA polymerase, RBP11-like subunit Eco28_RS02420 IPR011260 RNA polymerase, alpha subunit, C-terminal Eco28_RS02425 IPR000456 Ribosomal protein L17 Eco28_RS02425 IPR036373 Ribosomal protein L17 superfamily Eco28_RS02430 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain Eco28_RS02435 IPR011788 Zn(II)-responsive transcriptional regulator Eco28_RS02435 IPR000551 MerR-type HTH domain Eco28_RS02435 IPR009061 Putative DNA-binding domain superfamily Eco28_RS02440 IPR005589 Alternative ribosome-rescue factor A Eco28_RS02445 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L Eco28_RS02445 IPR001185 Large-conductance mechanosensitive channel Eco28_RS02445 IPR019823 Large-conductance mechanosensitive channel, conserved site Eco28_RS02445 IPR036019 Gated mechanosensitive channel Eco28_RS02450 IPR036291 NAD(P)-binding domain superfamily Eco28_RS02450 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Eco28_RS02450 IPR006036 Potassium uptake protein TrkA Eco28_RS02450 IPR003148 Regulator of K+ conductance, N-terminal Eco28_RS02450 IPR006037 Regulator of K+ conductance, C-terminal Eco28_RS02455 IPR004573 rRNA small subunit methyltransferase B Eco28_RS02455 IPR023541 rRNA small subunit methyltransferase B, enterobacteriaceae Eco28_RS02455 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS02455 IPR035926 NusB-like superfamily Eco28_RS02455 IPR023267 RNA (C5-cytosine) methyltransferase Eco28_RS02455 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site Eco28_RS02455 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type Eco28_RS02455 IPR006027 NusB/RsmB/TIM44 Eco28_RS02460 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain Eco28_RS02460 IPR005794 Methionyl-tRNA formyltransferase Eco28_RS02460 IPR005793 Formyl transferase, C-terminal Eco28_RS02460 IPR037022 Formyl transferase, C-terminal domain superfamily Eco28_RS02460 IPR002376 Formyl transferase, N-terminal Eco28_RS02460 IPR011034 Formyl transferase-like, C-terminal domain superfamily Eco28_RS02460 IPR036477 Formyl transferase, N-terminal domain superfamily Eco28_RS02460 IPR001555 Phosphoribosylglycinamide formyltransferase, active site Eco28_RS02465 IPR023635 Peptide deformylase Eco28_RS02465 IPR036821 Peptide deformylase superfamily Eco28_RS02470 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS02470 IPR041614 DprA, winged helix domain Eco28_RS02470 IPR003488 DNA recombination-mediator protein A Eco28_RS02475 IPR007456 Smg Eco28_RS02480 IPR013498 DNA topoisomerase, type IA, zn finger Eco28_RS02480 IPR000380 DNA topoisomerase, type IA Eco28_RS02485 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Eco28_RS02485 IPR006070 YrdC-like domain Eco28_RS02485 IPR023535 Threonylcarbamoyl-AMP synthase Eco28_RS02490 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Eco28_RS02490 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal Eco28_RS02490 IPR011342 Shikimate dehydrogenase Eco28_RS02490 IPR041121 SDH, C-terminal Eco28_RS02490 IPR022893 Shikimate dehydrogenase family Eco28_RS02490 IPR036291 NAD(P)-binding domain superfamily Eco28_RS02495 IPR036692 Shew3726-like superfamily Eco28_RS02495 IPR009962 Protein of unknown function DUF1488 Eco28_RS02500 IPR001451 Hexapeptide repeat Eco28_RS02500 IPR011004 Trimeric LpxA-like superfamily Eco28_RS02540 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type Eco28_RS02540 IPR003439 ABC transporter-like Eco28_RS02540 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02540 IPR017871 ABC transporter, conserved site Eco28_RS02540 IPR003593 AAA+ ATPase domain Eco28_RS02545 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS02545 IPR035906 MetI-like superfamily Eco28_RS02545 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS02550 IPR035906 MetI-like superfamily Eco28_RS02550 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS02550 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS02555 IPR018313 Solute-binding protein family 3, conserved site Eco28_RS02555 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS02570 IPR001036 Acriflavin resistance protein Eco28_RS02570 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Eco28_RS02570 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 Eco28_RS02575 IPR006143 RND efflux pump, membrane fusion protein Eco28_RS02575 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS02585 IPR009057 Homeobox-like domain superfamily Eco28_RS02585 IPR013572 Transcription regulator MAATS, C-terminal Eco28_RS02585 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS02585 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS02585 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS02590 IPR022540 Protein of unknown function DUF2556 Eco28_RS02595 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS02595 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS02595 IPR001091 Restriction/modification DNA-methylase Eco28_RS02595 IPR002941 DNA methylase N-4/N-6 Eco28_RS02600 IPR009057 Homeobox-like domain superfamily Eco28_RS02600 IPR005412 DNA-binding protein Fis Eco28_RS02600 IPR002197 DNA binding HTH domain, Fis-type Eco28_RS02605 IPR018517 tRNA-dihydrouridine synthase, conserved site Eco28_RS02605 IPR001269 tRNA-dihydrouridine synthase Eco28_RS02605 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 Eco28_RS02605 IPR032887 tRNA-dihydrouridine synthase B Eco28_RS02605 IPR013785 Aldolase-type TIM barrel Eco28_RS02605 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal Eco28_RS02605 IPR035587 DUS-like, FMN-binding domain Eco28_RS02610 IPR004498 Ribosomal protein L11 methyltransferase Eco28_RS02610 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS02615 IPR038377 Sodium/glucose symporter superfamily Eco28_RS02615 IPR011849 Sodium/pantothenate symporter Eco28_RS02615 IPR001734 Sodium/solute symporter Eco28_RS02615 IPR018212 Sodium/solute symporter, conserved site Eco28_RS02620 IPR010398 Protein of unknown function DUF997 Eco28_RS02625 IPR011761 ATP-grasp fold Eco28_RS02625 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase Eco28_RS02625 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS02625 IPR005481 Biotin carboxylase-like, N-terminal domain Eco28_RS02625 IPR011764 Biotin carboxylation domain Eco28_RS02625 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS02625 IPR011054 Rudiment single hybrid motif Eco28_RS02625 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain Eco28_RS02625 IPR005482 Biotin carboxylase, C-terminal Eco28_RS02630 IPR001249 Acetyl-CoA biotin carboxyl carrier Eco28_RS02630 IPR001882 Biotin-binding site Eco28_RS02630 IPR000089 Biotin/lipoyl attachment Eco28_RS02630 IPR011053 Single hybrid motif Eco28_RS02640 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS02640 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS02640 IPR014188 Acrylyl-CoA reductase AcuI Eco28_RS02640 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS02640 IPR036291 NAD(P)-binding domain superfamily Eco28_RS02640 IPR011032 GroES-like superfamily Eco28_RS02645 IPR029787 Nucleotide cyclase Eco28_RS02645 IPR000160 GGDEF domain Eco28_RS02645 IPR033423 Gammaproteobacterial periplasmic sensor domain GAPES4 Eco28_RS02645 IPR035919 EAL domain superfamily Eco28_RS02645 IPR001633 EAL domain Eco28_RS02660 IPR004753 Cell shape determining protein MreB Eco28_RS02665 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 Eco28_RS02665 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 Eco28_RS02665 IPR007221 Rod shape-determining protein MreC Eco28_RS02670 IPR026034 Cell shape-determining protein MreD, proteobacterial type Eco28_RS02670 IPR007227 Cell shape-determining protein MreD Eco28_RS02675 IPR029001 Inosine triphosphate pyrophosphatase-like Eco28_RS02675 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein Eco28_RS02680 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G Eco28_RS02680 IPR004659 Ribonuclease E/G Eco28_RS02680 IPR022967 RNA-binding domain, S1 Eco28_RS02680 IPR003029 S1 domain Eco28_RS02680 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS02685 IPR032712 AsmA-like, C-terminal Eco28_RS02685 IPR011836 Conserved hypothetical protein CHP02099 Eco28_RS02685 IPR025263 Domain of unknown function DUF3971 Eco28_RS02690 IPR036059 Metalloprotease TldD/PmbA superfamily Eco28_RS02690 IPR035068 Metalloprotease TldD/PmbA, N-terminal Eco28_RS02690 IPR002510 Metalloprotease TldD/PmbA Eco28_RS02690 IPR025502 TldD Eco28_RS02695 IPR000847 Transcription regulator HTH, LysR Eco28_RS02695 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS02695 IPR005119 LysR, substrate-binding Eco28_RS02695 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS02700 IPR012451 Protein of unknown function DUF1656 Eco28_RS02705 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Eco28_RS02705 IPR022871 Para-hydroxybenzoic acid efflux pump, subunit AaeA Eco28_RS02705 IPR006143 RND efflux pump, membrane fusion protein Eco28_RS02710 IPR023706 Para-hydroxybenzoic acid efflux pump, subunit AaeB Eco28_RS02710 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein Eco28_RS02715 IPR000468 Barstar (barnase inhibitor) Eco28_RS02715 IPR035905 Barstar-like superfamily Eco28_RS02720 IPR036275 YdgH-like superfamily Eco28_RS02720 IPR025543 Dodecin-like Eco28_RS02720 IPR010854 Domain of unknown function DUF1471 Eco28_RS02725 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS02725 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS02725 IPR001669 Arginine repressor Eco28_RS02725 IPR020899 Arginine repressor, C-terminal Eco28_RS02725 IPR036251 Arginine repressor, C-terminal domain superfamily Eco28_RS02725 IPR020900 Arginine repressor, DNA-binding domain Eco28_RS02730 IPR036291 NAD(P)-binding domain superfamily Eco28_RS02730 IPR023958 Malate dehydrogenase, type 1, bacterial Eco28_RS02730 IPR010097 Malate dehydrogenase, type 1 Eco28_RS02730 IPR001252 Malate dehydrogenase, active site Eco28_RS02730 IPR001557 L-lactate/malate dehydrogenase Eco28_RS02730 IPR001236 Lactate/malate dehydrogenase, N-terminal Eco28_RS02730 IPR022383 Lactate/malate dehydrogenase, C-terminal Eco28_RS02730 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Eco28_RS02735 IPR001940 Peptidase S1C Eco28_RS02735 IPR036034 PDZ superfamily Eco28_RS02735 IPR011783 Peptidase S1C, DegS Eco28_RS02735 IPR001478 PDZ domain Eco28_RS02735 IPR009003 Peptidase S1, PA clan Eco28_RS02740 IPR001940 Peptidase S1C Eco28_RS02740 IPR011782 Peptidase S1C, Do Eco28_RS02740 IPR009003 Peptidase S1, PA clan Eco28_RS02740 IPR001478 PDZ domain Eco28_RS02740 IPR036034 PDZ superfamily Eco28_RS02745 IPR009386 Protein of unknown function DUF1043 Eco28_RS02750 IPR005654 ATPase, AFG1-like Eco28_RS02750 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02750 IPR030870 Cell division protein ZapE Eco28_RS02755 IPR005823 Ribosomal protein L13, bacterial-type Eco28_RS02755 IPR023563 Ribosomal protein L13, conserved site Eco28_RS02755 IPR036899 Ribosomal protein L13 superfamily Eco28_RS02755 IPR005822 Ribosomal protein L13 Eco28_RS02760 IPR000754 Ribosomal protein S9 Eco28_RS02760 IPR023035 Ribosomal protein S9, bacterial/plastid Eco28_RS02760 IPR020574 Ribosomal protein S9, conserved site Eco28_RS02760 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS02760 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS02775 IPR034341 Stringent starvation protein A, N-terminal Eco28_RS02775 IPR036249 Thioredoxin-like superfamily Eco28_RS02775 IPR004045 Glutathione S-transferase, N-terminal Eco28_RS02775 IPR040079 Glutathione Transferase family Eco28_RS02775 IPR010987 Glutathione S-transferase, C-terminal-like Eco28_RS02775 IPR004046 Glutathione S-transferase, C-terminal Eco28_RS02775 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Eco28_RS02780 IPR007481 Stringent starvation protein B Eco28_RS02780 IPR036760 SspB-like superfamily Eco28_RS02785 IPR004669 C4-dicarboxylate anaerobic carrier Eco28_RS02785 IPR018385 C4-dicarboxylate anaerobic carrier-like Eco28_RS02795 IPR023730 HTH-type transcriptional repressor NanR Eco28_RS02795 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS02795 IPR011711 GntR, C-terminal Eco28_RS02795 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS02795 IPR000524 Transcription regulator HTH, GntR Eco28_RS02795 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS02800 IPR013785 Aldolase-type TIM barrel Eco28_RS02800 IPR002220 DapA-like Eco28_RS02800 IPR005264 N-acetylneuraminate lyase Eco28_RS02800 IPR020625 Schiff base-forming aldolase, active site Eco28_RS02800 IPR020624 Schiff base-forming aldolase, conserved site Eco28_RS02805 IPR011701 Major facilitator superfamily Eco28_RS02805 IPR020846 Major facilitator superfamily domain Eco28_RS02805 IPR036259 MFS transporter superfamily Eco28_RS02805 IPR004742 Sialic acid transporter Eco28_RS02810 IPR013785 Aldolase-type TIM barrel Eco28_RS02810 IPR007260 Putative N-acetylmannosamine-6-phosphate epimerase Eco28_RS02810 IPR011060 Ribulose-phosphate binding barrel Eco28_RS02815 IPR000600 ROK family Eco28_RS02815 IPR023945 N-acetylmannosamine kinase, bacterial Eco28_RS02820 IPR004375 YhcH/YjgK/YiaL family Eco28_RS02820 IPR037012 YhcH/YjgK/YiaL superfamily Eco28_RS02825 IPR009362 YhcG PDDEXK nuclease domain Eco28_RS02825 IPR041527 YhcG, N-terminal Eco28_RS02830 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 Eco28_RS02830 IPR023753 FAD/NAD(P)-binding domain Eco28_RS02830 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS02830 IPR009051 Alpha-helical ferredoxin Eco28_RS02830 IPR028261 Dihydroprymidine dehydrogenase domain II Eco28_RS02830 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS02835 IPR006982 Glutamate synthase, central-N Eco28_RS02835 IPR029055 Nucleophile aminohydrolases, N-terminal Eco28_RS02835 IPR002932 Glutamate synthase domain Eco28_RS02835 IPR017932 Glutamine amidotransferase type 2 domain Eco28_RS02835 IPR013785 Aldolase-type TIM barrel Eco28_RS02835 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily Eco28_RS02835 IPR002489 Glutamate synthase, alpha subunit, C-terminal Eco28_RS02850 IPR023404 Radical SAM, alpha/beta horseshoe Eco28_RS02850 IPR006638 Elp3/MiaB/NifB Eco28_RS02850 IPR039661 ELP3/YhcC Eco28_RS02850 IPR005911 Protein YhcC-like Eco28_RS02850 IPR032432 Radical SAM, C-terminal extension Eco28_RS02850 IPR007197 Radical SAM Eco28_RS02855 IPR036641 HPT domain superfamily Eco28_RS02855 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Eco28_RS02855 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS02855 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS02855 IPR040642 Histidine kinase receptor ArcB, transmembrane domain Eco28_RS02855 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS02855 IPR011006 CheY-like superfamily Eco28_RS02855 IPR027460 Aerobic respiration control sensor protein ArcB, transmembrane domain superfamily Eco28_RS02855 IPR000700 PAS-associated, C-terminal Eco28_RS02855 IPR035965 PAS domain superfamily Eco28_RS02855 IPR005467 Histidine kinase domain Eco28_RS02855 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS02855 IPR014409 Signal transduction histidine kinase, hybrid-type, aerobic respiration control ArcB Eco28_RS02855 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS02855 IPR013767 PAS fold Eco28_RS02855 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS02855 IPR000014 PAS domain Eco28_RS02860 IPR026041 Glyoxalase ElbB Eco28_RS02860 IPR029062 Class I glutamine amidotransferase-like Eco28_RS02865 IPR001264 Glycosyl transferase, family 51 Eco28_RS02865 IPR023346 Lysozyme-like domain superfamily Eco28_RS02865 IPR036950 Penicillin binding protein transglycosylase domain Eco28_RS02865 IPR011812 Biosynthetic peptidoglycan transglycosylase Eco28_RS02870 IPR011009 Protein kinase-like domain superfamily Eco28_RS02870 IPR019647 PhoP regulatory network protein YrbL Eco28_RS02875 IPR035895 HPr-like superfamily Eco28_RS02875 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Eco28_RS02875 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Eco28_RS02875 IPR000032 Phosphocarrier protein HPr-like Eco28_RS02880 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02880 IPR005337 RapZ-like family Eco28_RS02885 IPR016152 Phosphotransferase/anion transporter Eco28_RS02885 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN Eco28_RS02885 IPR002178 PTS EIIA type-2 domain Eco28_RS02890 IPR003489 Ribosome hibernation promoting factor/RaiA Eco28_RS02890 IPR036567 Ribosome hibernation promotion factor-like Eco28_RS02895 IPR007046 RNA polymerase sigma factor 54, core-binding domain Eco28_RS02895 IPR000394 RNA polymerase sigma factor 54 Eco28_RS02895 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily Eco28_RS02895 IPR007634 RNA polymerase sigma factor 54, DNA-binding Eco28_RS02900 IPR030921 LPS export ABC transporter, ATP-binding protein LptB Eco28_RS02900 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02900 IPR003439 ABC transporter-like Eco28_RS02900 IPR003593 AAA+ ATPase domain Eco28_RS02900 IPR017871 ABC transporter, conserved site Eco28_RS02900 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Eco28_RS02905 IPR005653 Organic solvent tolerance-like, N-terminal Eco28_RS02905 IPR014340 Lipopolysaccharide export system protein LptA Eco28_RS02910 IPR010664 Lipopolysaccharide assembly, LptC-related Eco28_RS02910 IPR026265 Lipopolysaccharide export system protein LptC Eco28_RS02915 IPR036412 HAD-like superfamily Eco28_RS02915 IPR023214 HAD superfamily Eco28_RS02915 IPR010023 KdsC family Eco28_RS02920 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type Eco28_RS02920 IPR035474 KpsF-like, SIS domain Eco28_RS02920 IPR000644 CBS domain Eco28_RS02920 IPR001347 Sugar isomerase (SIS) Eco28_RS02925 IPR004837 Sodium/calcium exchanger membrane region Eco28_RS02925 IPR004481 Sodium/potassium/calcium exchanger Eco28_RS02930 IPR003593 AAA+ ATPase domain Eco28_RS02930 IPR003439 ABC transporter-like Eco28_RS02930 IPR017871 ABC transporter, conserved site Eco28_RS02930 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02930 IPR030296 Probable ABC transporter ATP-binding protein MlaF/Mkl Eco28_RS02935 IPR030802 ABC transporter permease MalE Eco28_RS02935 IPR003453 ABC transport permease subunit MlaE, Proteobacteria Eco28_RS02940 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD Eco28_RS02940 IPR003399 Mce/MlaD Eco28_RS02945 IPR042245 Tgt2/MlaC superfamily Eco28_RS02945 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC Eco28_RS02950 IPR002645 STAS domain Eco28_RS02950 IPR036513 STAS domain superfamily Eco28_RS02955 IPR036065 BolA-like superfamily Eco28_RS02955 IPR002634 BolA protein Eco28_RS02960 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase Eco28_RS02960 IPR036968 Enolpyruvate transferase domain superfamily Eco28_RS02960 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Eco28_RS02960 IPR001986 Enolpyruvate transferase domain Eco28_RS02965 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS02965 IPR038722 Ner, winged helix-turn-helix DNA-binding domain Eco28_RS02970 IPR033749 Polyprenyl synthetase, conserved site Eco28_RS02970 IPR000092 Polyprenyl synthetase Eco28_RS02970 IPR008949 Isoprenoid synthase domain superfamily Eco28_RS02975 IPR028909 Ribosomal protein L21-like Eco28_RS02975 IPR001787 Ribosomal protein L21 Eco28_RS02975 IPR018258 Ribosomal protein L21, conserved site Eco28_RS02975 IPR036164 L21-like superfamily Eco28_RS02980 IPR001684 Ribosomal protein L27 Eco28_RS02980 IPR018261 Ribosomal protein L27, conserved site Eco28_RS02985 IPR000620 EamA domain Eco28_RS02990 IPR006169 GTP1/OBG domain Eco28_RS02990 IPR035101 GTP-binding protein, Obg-type Eco28_RS02990 IPR006073 GTP binding domain Eco28_RS02990 IPR006074 GTP1/OBG, conserved site Eco28_RS02990 IPR031167 OBG-type guanine nucleotide-binding (G) domain Eco28_RS02990 IPR014100 GTP-binding protein Obg/CgtA Eco28_RS02990 IPR036726 GTP1/OBG domain superfamily Eco28_RS02990 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS02995 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C Eco28_RS02995 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS03000 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily Eco28_RS03000 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily Eco28_RS03000 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal Eco28_RS03000 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal Eco28_RS03000 IPR018151 Transcription elongation factor, GreA/GreB, conserved site Eco28_RS03000 IPR006359 Transcription elongation factor GreA Eco28_RS03000 IPR023459 Transcription elongation factor GreA/GreB family Eco28_RS03000 IPR028624 Transcription elongation factor GreA/GreB Eco28_RS03005 IPR017924 RNA-binding protein YhbY Eco28_RS03005 IPR035920 YhbY-like superfamily Eco28_RS03005 IPR001890 RNA-binding, CRM domain Eco28_RS03010 IPR004512 Ribosomal RNA methyltransferase E, gammaproteobacteria Eco28_RS03010 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS03010 IPR002877 Ribosomal RNA methyltransferase FtsJ domain Eco28_RS03010 IPR015507 Ribosomal RNA large subunit methyltransferase E Eco28_RS03015 IPR003593 AAA+ ATPase domain Eco28_RS03015 IPR041569 AAA ATPase, AAA+ lid domain Eco28_RS03015 IPR003959 ATPase, AAA-type, core Eco28_RS03015 IPR005936 Peptidase, FtsH Eco28_RS03015 IPR003960 ATPase, AAA-type, conserved site Eco28_RS03015 IPR011546 Peptidase M41, FtsH extracellular Eco28_RS03015 IPR000642 Peptidase M41 Eco28_RS03015 IPR037219 Peptidase M41-like Eco28_RS03015 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS03020 IPR000489 Pterin-binding domain Eco28_RS03020 IPR011005 Dihydropteroate synthase-like Eco28_RS03020 IPR006390 Dihydropteroate synthase Eco28_RS03025 IPR005843 Alpha-D-phosphohexomutase, C-terminal Eco28_RS03025 IPR016066 Alpha-D-phosphohexomutase, conserved site Eco28_RS03025 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily Eco28_RS03025 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Eco28_RS03025 IPR005841 Alpha-D-phosphohexomutase superfamily Eco28_RS03025 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Eco28_RS03025 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Eco28_RS03025 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Eco28_RS03025 IPR006352 Phosphoglucosamine mutase, bacterial type Eco28_RS03030 IPR004692 Preprotein translocase SecG subunit Eco28_RS03045 IPR000917 Sulfatase, N-terminal Eco28_RS03045 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS03045 IPR040423 Phosphoethanolamine transferase Eco28_RS03050 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body Eco28_RS03050 IPR023434 Argininosuccinate synthase, type 1 subfamily Eco28_RS03050 IPR018223 Argininosuccinate synthase, conserved site Eco28_RS03050 IPR001518 Argininosuccinate synthase Eco28_RS03050 IPR023437 Argininosuccinate synthase, type 2 subfamily Eco28_RS03050 IPR024073 Argininosuccinate synthetase mutimerisation domain, C-terminal tail Eco28_RS03050 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS03060 IPR003728 Ribosome maturation factor RimP Eco28_RS03060 IPR028998 Ribosome maturation factor RimP, C-terminal Eco28_RS03060 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily Eco28_RS03060 IPR028989 Ribosome maturation factor RimP, N-terminal Eco28_RS03060 IPR035956 RimP, N-terminal domain superfamily Eco28_RS03065 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS03065 IPR010213 Transcription termination factor NusA Eco28_RS03065 IPR009019 K homology domain superfamily, prokaryotic type Eco28_RS03065 IPR025249 KH domain, NusA-like Eco28_RS03065 IPR030842 Transcription termination/antitermination protein NusA, bacterial Eco28_RS03065 IPR036555 NusA, N-terminal domain superfamily Eco28_RS03065 IPR015946 K homology domain-like, alpha/beta Eco28_RS03065 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical Eco28_RS03065 IPR022967 RNA-binding domain, S1 Eco28_RS03065 IPR003029 S1 domain Eco28_RS03065 IPR013735 Transcription factor NusA, N-terminal Eco28_RS03065 IPR010214 Transcription termination factor NusA, C-terminal duplication Eco28_RS03070 IPR005225 Small GTP-binding protein domain Eco28_RS03070 IPR015760 Translation initiation factor IF- 2 Eco28_RS03070 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS03070 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Eco28_RS03070 IPR006847 Translation initiation factor IF-2, N-terminal Eco28_RS03070 IPR013575 Initiation factor 2 associated domain, bacterial Eco28_RS03070 IPR009061 Putative DNA-binding domain superfamily Eco28_RS03070 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS03070 IPR000178 Translation initiation factor aIF-2, bacterial-like Eco28_RS03070 IPR000795 Transcription factor, GTP-binding domain Eco28_RS03070 IPR023115 Translation initiation factor IF- 2, domain 3 Eco28_RS03075 IPR000238 Ribosome-binding factor A Eco28_RS03075 IPR015946 K homology domain-like, alpha/beta Eco28_RS03075 IPR023799 Ribosome-binding factor A domain superfamily Eco28_RS03075 IPR020053 Ribosome-binding factor A, conserved site Eco28_RS03080 IPR036974 PUA domain superfamily Eco28_RS03080 IPR014780 tRNA pseudouridine synthase II, TruB Eco28_RS03080 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal Eco28_RS03080 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS03080 IPR032819 tRNA pseudouridylate synthase B, C-terminal Eco28_RS03080 IPR002501 Pseudouridine synthase II, N-terminal Eco28_RS03080 IPR015947 PUA-like superfamily Eco28_RS03085 IPR005290 Ribosomal protein S15, bacterial-type Eco28_RS03085 IPR009068 S15/NS1, RNA-binding Eco28_RS03085 IPR000589 Ribosomal protein S15 Eco28_RS03090 IPR027408 PNPase/RNase PH domain superfamily Eco28_RS03090 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain Eco28_RS03090 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS03090 IPR036345 Exoribonuclease, PH domain 2 superfamily Eco28_RS03090 IPR015847 Exoribonuclease, phosphorolytic domain 2 Eco28_RS03090 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily Eco28_RS03090 IPR001247 Exoribonuclease, phosphorolytic domain 1 Eco28_RS03090 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS03090 IPR036612 K Homology domain, type 1 superfamily Eco28_RS03090 IPR022967 RNA-binding domain, S1 Eco28_RS03090 IPR004087 K Homology domain Eco28_RS03090 IPR012162 Polyribonucleotide nucleotidyltransferase Eco28_RS03090 IPR003029 S1 domain Eco28_RS03090 IPR004088 K Homology domain, type 1 Eco28_RS03095 IPR019734 Tetratricopeptide repeat Eco28_RS03095 IPR013105 Tetratricopeptide repeat 2 Eco28_RS03095 IPR023605 Lipoprotein NlpI Eco28_RS03095 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS03095 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS03105 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Eco28_RS03105 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS03105 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Eco28_RS03105 IPR001650 Helicase, C-terminal Eco28_RS03105 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS03105 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Eco28_RS03105 IPR011545 DEAD/DEAH box helicase domain Eco28_RS03105 IPR034415 CsdA, RNA recognition motif Eco28_RS03105 IPR014014 RNA helicase, DEAD-box type, Q motif Eco28_RS03105 IPR021046 Cold-shock protein, DEAD box A, C-terminal Eco28_RS03105 IPR028618 ATP-dependent RNA helicase DeaD Eco28_RS03110 IPR018227 Amino acid/polyamine transporter 2 Eco28_RS03110 IPR013061 Tryptophan/tryrosine permease, conserved site Eco28_RS03110 IPR013059 Tryptophan/tyrosine transporter Eco28_RS03115 IPR011251 Luciferase-like domain Eco28_RS03115 IPR036661 Luciferase-like domain superfamily Eco28_RS03115 IPR019949 Luciferase family oxidoreductase, group 1 Eco28_RS03120 IPR001539 Peptidase U32 Eco28_RS03125 IPR036206 Thiamin phosphate synthase superfamily Eco28_RS03125 IPR001539 Peptidase U32 Eco28_RS03130 IPR016830 Uncharacterised conserved protein UCP025550, lipid carrier protein, YhbT Eco28_RS03130 IPR036527 SCP2 sterol-binding domain superfamily Eco28_RS03130 IPR003033 SCP2 sterol-binding domain Eco28_RS03130 IPR039543 Lipid-binding protein POX18/YhbT/NSL-TP1 Eco28_RS03135 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS03135 IPR000182 GNAT domain Eco28_RS03140 IPR000305 GIY-YIG endonuclease Eco28_RS03140 IPR035901 GIY-YIG endonuclease superfamily Eco28_RS03140 IPR022992 Uncharacterised protein family UPF0213, GIY-YIG endonuclease Eco28_RS03145 IPR012349 FMN-binding split barrel Eco28_RS03145 IPR011194 Uncharacterised protein family UPF0306 Eco28_RS03150 IPR006286 Deglycase PfpI Eco28_RS03150 IPR029062 Class I glutamine amidotransferase-like Eco28_RS03150 IPR002818 DJ-1/PfpI Eco28_RS03155 IPR000534 Semialdehyde dehydrogenase, NAD-binding Eco28_RS03155 IPR036291 NAD(P)-binding domain superfamily Eco28_RS03155 IPR016040 NAD(P)-binding domain Eco28_RS03160 IPR005524 Predicted permease DUF318 Eco28_RS03165 IPR014004 Transport-associated and nodulation domain, bacteria Eco28_RS03165 IPR007055 BON domain Eco28_RS03170 IPR001347 Sugar isomerase (SIS) Eco28_RS03170 IPR035461 GmhA/DiaA Eco28_RS03170 IPR023070 DnaA initiator-associating protein Eco28_RS03175 IPR011335 Restriction endonuclease type II-like Eco28_RS03175 IPR011856 tRNA endonuclease-like domain superfamily Eco28_RS03175 IPR003509 Uncharacterised protein family UPF0102 Eco28_RS03180 IPR008939 Lytic transglycosylase, superhelical U-shaped Eco28_RS03180 IPR007443 Penicillin-binding protein activator LpoA Eco28_RS03180 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS03180 IPR028082 Periplasmic binding protein-like I Eco28_RS03185 IPR000878 Tetrapyrrole methylase Eco28_RS03185 IPR014776 Tetrapyrrole methylase, subdomain 2 Eco28_RS03185 IPR014777 Tetrapyrrole methylase, subdomain 1 Eco28_RS03185 IPR035996 Tetrapyrrole methylase superfamily Eco28_RS03185 IPR018063 SAM-dependent methyltransferase RsmI, conserved site Eco28_RS03185 IPR008189 rRNA small subunit methyltransferase I Eco28_RS03190 IPR008966 Adhesion domain superfamily Eco28_RS03190 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS03190 IPR000259 Fimbrial-type adhesion domain Eco28_RS03195 IPR025885 PapC, N-terminal domain Eco28_RS03195 IPR037224 PapC, N-terminal domain superfamily Eco28_RS03195 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS03195 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS03195 IPR000015 Outer membrane usher protein Eco28_RS03195 IPR025949 PapC-like, C-terminal domain Eco28_RS03200 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS03200 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS03200 IPR013783 Immunoglobulin-like fold Eco28_RS03200 IPR008962 PapD-like superfamily Eco28_RS03200 IPR018046 Pili assembly chaperone, conserved site Eco28_RS03200 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS03200 IPR001829 Pili assembly chaperone, bacterial Eco28_RS03205 IPR000259 Fimbrial-type adhesion domain Eco28_RS03205 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS03205 IPR008966 Adhesion domain superfamily Eco28_RS03210 IPR037171 NagB/RpiA transferase-like Eco28_RS03210 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase Eco28_RS03210 IPR004547 Glucosamine-6-phosphate isomerase Eco28_RS03210 IPR018321 Glucosamine-6-phosphate isomerase, conserved site Eco28_RS03215 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component Eco28_RS03220 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit Eco28_RS03225 IPR004720 Phosphotransferase system, sorbose subfamily IIB component Eco28_RS03225 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily Eco28_RS03225 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup Eco28_RS03230 IPR023788 D-tagatose-bisphosphate aldolase, class II, subunit KbaY Eco28_RS03230 IPR013785 Aldolase-type TIM barrel Eco28_RS03230 IPR000771 Fructose-bisphosphate aldolase, class-II Eco28_RS03230 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY Eco28_RS03235 IPR035466 GlmS/AgaS, SIS domain 1 Eco28_RS03235 IPR001347 Sugar isomerase (SIS) Eco28_RS03235 IPR014180 Sugar isomerase, AgaS Eco28_RS03235 IPR035464 AgaS, SIS domain Eco28_RS03240 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS03240 IPR006680 Amidohydrolase-related Eco28_RS03240 IPR003764 N-acetylglucosamine-6-phosphate deacetylase Eco28_RS03240 IPR032466 Metal-dependent hydrolase Eco28_RS03245 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily Eco28_RS03245 IPR004701 Phosphotransferase system, mannose-type IIA component Eco28_RS03245 IPR033887 PTS system mannose/sorbose specific IIA subunit Eco28_RS03250 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component Eco28_RS03255 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit Eco28_RS03260 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup Eco28_RS03260 IPR004720 Phosphotransferase system, sorbose subfamily IIB component Eco28_RS03260 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily Eco28_RS03265 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ-like Eco28_RS03265 IPR013785 Aldolase-type TIM barrel Eco28_RS03265 IPR023435 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit KbaZ Eco28_RS03275 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS03275 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS03275 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS03275 IPR037171 NagB/RpiA transferase-like Eco28_RS03275 IPR001034 DeoR-type HTH domain Eco28_RS03275 IPR014036 DeoR C-terminal sensor domain Eco28_RS03280 IPR021679 Toxin endonuclease, YhaV Eco28_RS03285 IPR007159 SpoVT-AbrB domain Eco28_RS03285 IPR037914 SpoVT-AbrB domain superfamily Eco28_RS03285 IPR031848 PrlF antitoxin Eco28_RS03290 IPR017654 Galactarate dehydratase GarD-like Eco28_RS03290 IPR013974 SAF domain Eco28_RS03290 IPR007392 D-galactarate/Altronate dehydratase, C-terminal Eco28_RS03290 IPR032893 Galactarate dehydratase (L-threo-forming) GarD, Enterobacteriaceae Eco28_RS03295 IPR036259 MFS transporter superfamily Eco28_RS03295 IPR020846 Major facilitator superfamily domain Eco28_RS03295 IPR000849 Sugar phosphate transporter Eco28_RS03295 IPR011701 Major facilitator superfamily Eco28_RS03300 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS03300 IPR005000 HpcH/HpaI aldolase/citrate lyase domain Eco28_RS03300 IPR017648 5-keto-4-deoxy-D-glucarate aldolase Eco28_RS03300 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS03305 IPR015815 3-hydroxyisobutyrate dehydrogenase-related Eco28_RS03305 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS03305 IPR036291 NAD(P)-binding domain superfamily Eco28_RS03305 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Eco28_RS03305 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS03305 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site Eco28_RS03305 IPR006398 2-hydroxy-3-oxopropionate reductase Eco28_RS03305 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain Eco28_RS03310 IPR018193 Glycerate kinase, flavodoxin-like fold Eco28_RS03310 IPR004381 Glycerate kinase Eco28_RS03310 IPR036129 Glycerate kinase superfamily Eco28_RS03310 IPR018197 Glycerate kinase, restriction-enzyme-like fold Eco28_RS03325 IPR016420 Uncharacterised conserved protein UCP004546 Eco28_RS03335 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS03335 IPR000847 Transcription regulator HTH, LysR Eco28_RS03335 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS03335 IPR005119 LysR, substrate-binding Eco28_RS03340 IPR005789 Threonine dehydratase, catabolic Eco28_RS03340 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Eco28_RS03340 IPR001926 Pyridoxal-phosphate dependent enzyme Eco28_RS03340 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site Eco28_RS03345 IPR018227 Amino acid/polyamine transporter 2 Eco28_RS03345 IPR023726 Threonine/serine transporter TdcC Eco28_RS03345 IPR004694 Hydroxy amino acid transporter Eco28_RS03350 IPR000890 Aliphatic acid kinase, short-chain Eco28_RS03350 IPR004372 Acetate/propionate kinase Eco28_RS03350 IPR024917 Propionate kinase Eco28_RS03350 IPR023865 Aliphatic acid kinase, short-chain, conserved site Eco28_RS03355 IPR005949 Formate acetyltransferase Eco28_RS03355 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Eco28_RS03355 IPR004184 Pyruvate formate lyase domain Eco28_RS03355 IPR001150 Glycine radical domain Eco28_RS03360 IPR035959 RutC-like superfamily Eco28_RS03360 IPR006175 YjgF/YER057c/UK114 family Eco28_RS03360 IPR006056 RidA family Eco28_RS03360 IPR019897 RidA, conserved site Eco28_RS03365 IPR029009 Allosteric substrate binding domain superfamily Eco28_RS03365 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form Eco28_RS03365 IPR005130 Serine dehydratase-like, alpha subunit Eco28_RS03365 IPR005131 Serine dehydratase beta chain Eco28_RS03375 IPR021144 Uncharacterised protein family UPF0597 Eco28_RS03375 IPR005130 Serine dehydratase-like, alpha subunit Eco28_RS03385 IPR014710 RmlC-like jelly roll fold Eco28_RS03385 IPR012093 Pirin Eco28_RS03385 IPR003829 Pirin, N-terminal domain Eco28_RS03385 IPR011051 RmlC-like cupin domain superfamily Eco28_RS03385 IPR041602 Quercetin 2,3-dioxygenase, C-terminal cupin domain Eco28_RS03390 IPR000847 Transcription regulator HTH, LysR Eco28_RS03390 IPR005119 LysR, substrate-binding Eco28_RS03390 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS03390 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS03400 IPR008523 Protein of unknown function DUF805 Eco28_RS03405 IPR008523 Protein of unknown function DUF805 Eco28_RS03410 IPR040079 Glutathione Transferase family Eco28_RS03410 IPR004045 Glutathione S-transferase, N-terminal Eco28_RS03410 IPR010987 Glutathione S-transferase, C-terminal-like Eco28_RS03410 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Eco28_RS03410 IPR036249 Thioredoxin-like superfamily Eco28_RS03410 IPR016639 Glutathione S-transferase Omega/GSH Eco28_RS03415 IPR032808 DoxX family Eco28_RS03420 IPR025612 YqjK-like protein Eco28_RS03425 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III Eco28_RS03430 IPR010279 Inner membrane protein YqjD/ElaB Eco28_RS03435 IPR009468 Protein of unknown function DUF1090 Eco28_RS03440 IPR026574 Modulator protein MzrA Eco28_RS03440 IPR027398 SecD export protein N-terminal TM domain Eco28_RS03445 IPR032816 SNARE associated Golgi protein Eco28_RS03445 IPR032818 DedA family Eco28_RS03450 IPR011711 GntR, C-terminal Eco28_RS03450 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS03450 IPR000524 Transcription regulator HTH, GntR Eco28_RS03450 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS03450 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS03455 IPR036259 MFS transporter superfamily Eco28_RS03455 IPR011701 Major facilitator superfamily Eco28_RS03455 IPR020846 Major facilitator superfamily domain Eco28_RS03460 IPR003766 Uronate isomerase Eco28_RS03460 IPR032466 Metal-dependent hydrolase Eco28_RS03465 IPR007392 D-galactarate/Altronate dehydratase, C-terminal Eco28_RS03465 IPR013974 SAF domain Eco28_RS03470 IPR026267 Inner membrane protein YgjV Eco28_RS03470 IPR019629 Uncharacterised protein family HI1736/YgjV Eco28_RS03475 IPR036458 Sodium:dicarboxylate symporter superfamily Eco28_RS03475 IPR001991 Sodium:dicarboxylate symporter Eco28_RS03475 IPR023025 Serine/threonine transporter SstT Eco28_RS03485 IPR022369 Integral membrane protein TerC, riboswitch-linked Eco28_RS03485 IPR005496 Integral membrane protein TerC Eco28_RS03490 IPR036291 NAD(P)-binding domain superfamily Eco28_RS03490 IPR000683 Oxidoreductase, N-terminal Eco28_RS03495 IPR003848 Domain of unknown function DUF218 Eco28_RS03500 IPR002725 Protein of unknown function DUF45 Eco28_RS03505 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS03505 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS03505 IPR007848 Methyltransferase small domain Eco28_RS03505 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD Eco28_RS03515 IPR039060 Antitoxin HigA Eco28_RS03515 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS03515 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS03520 IPR013785 Aldolase-type TIM barrel Eco28_RS03520 IPR023753 FAD/NAD(P)-binding domain Eco28_RS03520 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal Eco28_RS03520 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS03530 IPR012341 Six-hairpin glycosidase-like superfamily Eco28_RS03530 IPR001661 Glycoside hydrolase, family 37 Eco28_RS03530 IPR008928 Six-hairpin glycosidase superfamily Eco28_RS03540 IPR002293 Amino acid/polyamine transporter I Eco28_RS03545 IPR037012 YhcH/YjgK/YiaL superfamily Eco28_RS03545 IPR004375 YhcH/YjgK/YiaL family Eco28_RS03550 IPR006103 Glycoside hydrolase family 2, catalytic domain Eco28_RS03550 IPR008979 Galactose-binding-like domain superfamily Eco28_RS03550 IPR032312 Beta-galactosidase, domain 4 Eco28_RS03550 IPR013783 Immunoglobulin-like fold Eco28_RS03550 IPR014718 Glycoside hydrolase-type carbohydrate-binding Eco28_RS03550 IPR023230 Glycoside hydrolase, family 2, conserved site Eco28_RS03550 IPR006101 Glycoside hydrolase, family 2 Eco28_RS03550 IPR004199 Beta galactosidase small chain/ domain 5 Eco28_RS03550 IPR023232 Glycoside hydrolase, family 2, active site Eco28_RS03550 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich Eco28_RS03550 IPR017853 Glycoside hydrolase superfamily Eco28_RS03550 IPR006104 Glycosyl hydrolases family 2, sugar binding domain Eco28_RS03550 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase Eco28_RS03550 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily Eco28_RS03550 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS03555 IPR028082 Periplasmic binding protein-like I Eco28_RS03555 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS03555 IPR000843 LacI-type HTH domain Eco28_RS03565 IPR002547 tRNA-binding domain Eco28_RS03565 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS03570 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS03570 IPR005814 Aminotransferase class-III Eco28_RS03570 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS03570 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS03570 IPR017747 Putrescine aminotransferase Eco28_RS03580 IPR035965 PAS domain superfamily Eco28_RS03580 IPR013655 PAS fold-3 Eco28_RS03580 IPR000014 PAS domain Eco28_RS03580 IPR004090 Chemotaxis methyl-accepting receptor Eco28_RS03580 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS03580 IPR001610 PAC motif Eco28_RS03580 IPR003660 HAMP domain Eco28_RS03585 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS03585 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS03585 IPR005149 Transcription regulator PadR, N-terminal Eco28_RS03595 IPR017927 FAD-binding domain, ferredoxin reductase-type Eco28_RS03595 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Eco28_RS03595 IPR039374 Siderophore-interacting protein Eco28_RS03595 IPR013113 FAD-binding 9, siderophore-interacting Eco28_RS03595 IPR017938 Riboflavin synthase-like beta-barrel Eco28_RS03595 IPR007037 Siderophore-interacting protein, C-terminal domain Eco28_RS03605 IPR015637 G/U mismatch-specific DNA glycosylase Eco28_RS03605 IPR023502 G/U mismatch-specific DNA glycosylase, bacterial Eco28_RS03605 IPR005122 Uracil-DNA glycosylase-like Eco28_RS03605 IPR036895 Uracil-DNA glycosylase-like domain superfamily Eco28_RS03610 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS03610 IPR014284 RNA polymerase sigma-70 like domain Eco28_RS03610 IPR007127 RNA polymerase sigma factor 70, region 1.1 Eco28_RS03610 IPR007630 RNA polymerase sigma-70 region 4 Eco28_RS03610 IPR007631 RNA polymerase sigma factor 70, non-essential domain Eco28_RS03610 IPR009042 RNA polymerase sigma-70 region 1.2 Eco28_RS03610 IPR007627 RNA polymerase sigma-70 region 2 Eco28_RS03610 IPR007624 RNA polymerase sigma-70 region 3 Eco28_RS03610 IPR042189 Sigma-70 factor, region 1.1 superfamily Eco28_RS03610 IPR013325 RNA polymerase sigma factor, region 2 Eco28_RS03610 IPR013324 RNA polymerase sigma factor, region 3/4-like Eco28_RS03610 IPR012760 RNA polymerase sigma factor RpoD, C-terminal Eco28_RS03610 IPR000943 RNA polymerase sigma-70 Eco28_RS03610 IPR028630 RNA polymerase sigma factor RpoD Eco28_RS03620 IPR036977 DNA Primase, CHC2-type zinc finger Eco28_RS03620 IPR013173 DNA primase DnaG, DnaB-binding domain Eco28_RS03620 IPR006295 DNA primase, DnaG Eco28_RS03620 IPR019475 DNA primase, DnaB-helicase binding domain Eco28_RS03620 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily Eco28_RS03620 IPR030846 DNA primase DnaG, bacteria Eco28_RS03620 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Eco28_RS03620 IPR002694 Zinc finger, CHC2-type Eco28_RS03620 IPR013264 DNA primase, catalytic core, N-terminal Eco28_RS03620 IPR006171 TOPRIM domain Eco28_RS03620 IPR034151 Bacterial DnaG primase, TOPRIM domain Eco28_RS03625 IPR038380 Ribosomal protein S21 superfamily Eco28_RS03625 IPR001911 Ribosomal protein S21 Eco28_RS03625 IPR018278 Ribosomal protein S21, conserved site Eco28_RS03635 IPR000905 Gcp-like domain Eco28_RS03635 IPR017861 Kae1/TsaD family Eco28_RS03635 IPR017860 Peptidase M22, conserved site Eco28_RS03635 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD Eco28_RS03640 IPR001898 Solute carrier family 13 Eco28_RS03640 IPR030676 Citrate carrier CitT-related Eco28_RS03645 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain Eco28_RS03645 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily Eco28_RS03650 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain Eco28_RS03660 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS03660 IPR000847 Transcription regulator HTH, LysR Eco28_RS03660 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS03660 IPR005119 LysR, substrate-binding Eco28_RS03665 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY Eco28_RS03670 IPR006157 Dihydroneopterin aldolase/epimerase domain Eco28_RS03670 IPR006156 Dihydroneopterin aldolase Eco28_RS03675 IPR003824 Undecaprenyl-diphosphatase UppP Eco28_RS03680 IPR006674 HD domain Eco28_RS03680 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Eco28_RS03680 IPR003607 HD/PDEase domain Eco28_RS03680 IPR012006 tRNA nucleotidyltransferase, proteobacteria Eco28_RS03680 IPR002646 Poly A polymerase, head domain Eco28_RS03685 IPR003646 SH3-like domain, bacterial-type Eco28_RS03685 IPR016476 SH3 domain protein Eco28_RS03695 IPR039013 Inorganic triphosphatase YgiF Eco28_RS03695 IPR023577 CYTH domain Eco28_RS03695 IPR033469 CYTH-like domain superfamily Eco28_RS03695 IPR007899 CHAD domain Eco28_RS03700 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain Eco28_RS03700 IPR023057 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme Eco28_RS03700 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase Eco28_RS03705 IPR011914 RfaE bifunctional protein, domain II Eco28_RS03705 IPR029056 Ribokinase-like Eco28_RS03705 IPR011913 RfaE bifunctional protein, domain I Eco28_RS03705 IPR011611 Carbohydrate kinase PfkB Eco28_RS03705 IPR004821 Cytidyltransferase-like domain Eco28_RS03705 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS03705 IPR023030 Bifunctional protein HldE Eco28_RS03705 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS03715 IPR031905 Flotillin, C-terminal domain Eco28_RS03715 IPR027705 Flotillin family Eco28_RS03715 IPR036013 Band 7/SPFH domain superfamily Eco28_RS03715 IPR001107 Band 7 domain Eco28_RS03720 IPR010840 Protein of unknown function DUF1449 Eco28_RS03725 IPR015065 Surface composition regulator Eco28_RS03725 IPR036295 GlgS superfamily Eco28_RS03730 IPR007475 Ubiquinone biosynthesis accessory factor UbiK Eco28_RS03735 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Eco28_RS03735 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB Eco28_RS03745 IPR023498 Zinc transporter ZupT Eco28_RS03745 IPR003689 Zinc/iron permease Eco28_RS03750 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA-type Eco28_RS03750 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B Eco28_RS03755 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS03755 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain Eco28_RS03760 IPR009576 Biofilm formation YgiB Eco28_RS03770 IPR010130 Type I secretion outer membrane protein, TolC Eco28_RS03770 IPR003423 Outer membrane efflux protein Eco28_RS03775 IPR020084 NUDIX hydrolase, conserved site Eco28_RS03775 IPR004385 Nucleoside diphosphate pyrophosphatase Eco28_RS03775 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS03775 IPR000086 NUDIX hydrolase domain Eco28_RS03780 IPR009659 Protein of unknown function DUF1249 Eco28_RS03785 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Eco28_RS03785 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA Eco28_RS03785 IPR029052 Metallo-dependent phosphatase-like Eco28_RS03790 IPR029058 Alpha/Beta hydrolase fold Eco28_RS03790 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA Eco28_RS03795 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS03795 IPR002288 DNA gyrase B subunit, C-terminal Eco28_RS03795 IPR006171 TOPRIM domain Eco28_RS03795 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative Eco28_RS03795 IPR018522 DNA topoisomerase, type IIA, conserved site Eco28_RS03795 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 Eco28_RS03795 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal Eco28_RS03795 IPR013760 DNA topoisomerase, type IIA-like domain superfamily Eco28_RS03795 IPR001241 DNA topoisomerase, type IIA Eco28_RS03795 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS03795 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS03795 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS03800 IPR007138 Antibiotic biosynthesis monooxygenase domain Eco28_RS03800 IPR011008 Dimeric alpha-beta barrel Eco28_RS03805 IPR029039 Flavoprotein-like superfamily Eco28_RS03805 IPR003680 Flavodoxin-like fold Eco28_RS03810 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS03810 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS03810 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS03810 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS03810 IPR005467 Histidine kinase domain Eco28_RS03810 IPR013727 Two-component sensor kinase, N-terminal Eco28_RS03810 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS03815 IPR011006 CheY-like superfamily Eco28_RS03815 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS03815 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS03815 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS03815 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS03820 IPR016052 Bacteriophage 933W, L0136 Eco28_RS03820 IPR005220 Bacterial OB-fold Eco28_RS03820 IPR036700 Bacterial OB-fold superfamily Eco28_RS03825 IPR011256 Regulatory factor, effector binding domain superfamily Eco28_RS03825 IPR029442 GyrI-like small molecule binding domain Eco28_RS03825 IPR010499 Bacterial transcription activator, effector binding Eco28_RS03830 IPR031451 mRNA interferase toxin MqsR Eco28_RS03830 IPR038493 Toxin MqsR superfamily Eco28_RS03835 IPR022452 Antitoxin MqsA Eco28_RS03835 IPR032758 Antitoxin MqsA/HigA-2 Eco28_RS03835 IPR022453 Zinc finger, MqsA-type Eco28_RS03835 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS03835 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS03840 IPR030678 Peptide/nickel binding protein, MppA-type Eco28_RS03840 IPR039424 Solute-binding protein family 5 Eco28_RS03840 IPR000914 Solute-binding protein family 5 domain Eco28_RS03845 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative Eco28_RS03845 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat Eco28_RS03845 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Eco28_RS03845 IPR013760 DNA topoisomerase, type IIA-like domain superfamily Eco28_RS03845 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal Eco28_RS03845 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta Eco28_RS03845 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily Eco28_RS03850 IPR002123 Phospholipid/glycerol acyltransferase Eco28_RS03850 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase Eco28_RS03855 IPR001117 Multicopper oxidase, type 1 Eco28_RS03855 IPR011706 Multicopper oxidase, type 2 Eco28_RS03855 IPR011707 Multicopper oxidase, type 3 Eco28_RS03855 IPR008972 Cupredoxin Eco28_RS03855 IPR026589 Cell division protein FtsP Eco28_RS03855 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS03855 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS03860 IPR007197 Radical SAM Eco28_RS03860 IPR020612 Methylthiotransferase, conserved site Eco28_RS03860 IPR023404 Radical SAM, alpha/beta horseshoe Eco28_RS03860 IPR022946 Uncharacterised protein family UPF0313 Eco28_RS03860 IPR006638 Elp3/MiaB/NifB Eco28_RS03860 IPR024560 Uncharacterised protein family UPF0313, C-terminal Eco28_RS03860 IPR013704 Uncharacterised protein family UPF0313, N-terminal Eco28_RS03865 IPR016367 Murein-lipoprotein Eco28_RS03865 IPR006817 Lipoprotein leucine-zipper Eco28_RS03870 IPR024289 Domain of unknown function DUF3828 Eco28_RS03875 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS03875 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS03875 IPR020471 Aldo/keto reductase Eco28_RS03875 IPR018170 Aldo/keto reductase, conserved site Eco28_RS03880 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA Eco28_RS03880 IPR018211 Alcohol dehydrogenase, iron-type, conserved site Eco28_RS03885 IPR009057 Homeobox-like domain superfamily Eco28_RS03885 IPR009594 Transcription regulator HTH, AraC, N-terminal Eco28_RS03885 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS03890 IPR032816 SNARE associated Golgi protein Eco28_RS03890 IPR032818 DedA family Eco28_RS03895 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS03895 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS03895 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS03895 IPR006233 Cystathionine beta-lyase, bacterial Eco28_RS03895 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme Eco28_RS03905 IPR014164 TonB-system energizer ExbB type-1 Eco28_RS03905 IPR002898 MotA/TolQ/ExbB proton channel Eco28_RS03910 IPR014170 TonB system transport protein ExbD type-1 Eco28_RS03910 IPR003400 Biopolymer transport protein ExbD/TolR Eco28_RS03915 IPR036291 NAD(P)-binding domain superfamily Eco28_RS03915 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS03915 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS03920 IPR020761 Uncharacterised protein family UPF0114, bacteria Eco28_RS03920 IPR005134 Uncharacterised protein family UPF0114 Eco28_RS03925 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS03925 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS03930 IPR029058 Alpha/Beta hydrolase fold Eco28_RS03930 IPR002925 Dienelactone hydrolase Eco28_RS03935 IPR022574 Protein of unknown function DUF2623 Eco28_RS03945 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS03945 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS03945 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Eco28_RS03945 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily Eco28_RS03945 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Eco28_RS03945 IPR001821 [NiFe]-hydrogenase, small subunit Eco28_RS03945 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Eco28_RS03950 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS03950 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS03950 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS03955 IPR005614 NrfD family Eco28_RS03960 IPR029014 [NiFe]-hydrogenase, large subunit Eco28_RS03960 IPR001501 Nickel-dependent hydrogenase, large subunit Eco28_RS03960 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site Eco28_RS03970 IPR001501 Nickel-dependent hydrogenase, large subunit Eco28_RS03970 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site Eco28_RS03970 IPR029014 [NiFe]-hydrogenase, large subunit Eco28_RS03975 IPR000671 Peptidase A31 family Eco28_RS03975 IPR004419 Peptidase A31, hydrogenase expression/formation protein Eco28_RS03975 IPR023430 Peptidase HybD-like domain superfamily Eco28_RS03980 IPR038530 [NiFe]-hydrogenase assembly, chaperone, HybE superfamily Eco28_RS03980 IPR023994 [NiFe]-hydrogenase assembly, chaperone, HybE Eco28_RS03985 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site Eco28_RS03985 IPR039002 Hydrogenase maturation factor HybF Eco28_RS03985 IPR000688 Hydrogenase maturation factor HypA/HybF Eco28_RS03990 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Eco28_RS03990 IPR019812 Hydrogenase assembly chaperone, conserved site Eco28_RS03990 IPR037254 HupF/HypC superfamily Eco28_RS03995 IPR004045 Glutathione S-transferase, N-terminal Eco28_RS03995 IPR010987 Glutathione S-transferase, C-terminal-like Eco28_RS03995 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Eco28_RS03995 IPR036249 Thioredoxin-like superfamily Eco28_RS03995 IPR040079 Glutathione Transferase family Eco28_RS04000 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS04000 IPR007921 CHAP domain Eco28_RS04000 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain Eco28_RS04000 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS04010 IPR001204 Phosphate transporter Eco28_RS04015 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04020 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04025 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04030 IPR002797 Polysaccharide biosynthesis protein Eco28_RS04040 IPR006513 Conserved hypothetical protein CHP01626, YtfJ Eco28_RS04045 IPR030922 LPS export ABC transporter permease LptF Eco28_RS04045 IPR005495 Permease LptG/LptF-related Eco28_RS04055 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site Eco28_RS04055 IPR004839 Aminotransferase, class I/classII Eco28_RS04055 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type Eco28_RS04055 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS04055 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS04055 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS04055 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria Eco28_RS04060 IPR036736 ACP-like superfamily Eco28_RS04060 IPR006162 Phosphopantetheine attachment site Eco28_RS04060 IPR003231 Acyl carrier protein (ACP) Eco28_RS04060 IPR009081 Phosphopantetheine binding ACP domain Eco28_RS04060 IPR020806 Polyketide synthase, phosphopantetheine-binding domain Eco28_RS04070 IPR020845 AMP-binding, conserved site Eco28_RS04070 IPR028154 AMP-dependent ligase, C-terminal Eco28_RS04070 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS04070 IPR000873 AMP-dependent synthetase/ligase Eco28_RS04075 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS04075 IPR039968 Uncharacterized protein YghO-like Eco28_RS04080 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS04080 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS04080 IPR011711 GntR, C-terminal Eco28_RS04080 IPR000524 Transcription regulator HTH, GntR Eco28_RS04080 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS04085 IPR016166 FAD-binding domain, PCMH-type Eco28_RS04085 IPR016164 FAD-linked oxidase-like, C-terminal Eco28_RS04085 IPR004113 FAD-linked oxidase, C-terminal Eco28_RS04085 IPR004490 Glycolate oxidase subunit GlcD Eco28_RS04085 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 Eco28_RS04085 IPR006094 FAD linked oxidase, N-terminal Eco28_RS04085 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS04090 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS04090 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS04090 IPR016164 FAD-linked oxidase-like, C-terminal Eco28_RS04090 IPR016166 FAD-binding domain, PCMH-type Eco28_RS04090 IPR006094 FAD linked oxidase, N-terminal Eco28_RS04095 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS04095 IPR009051 Alpha-helical ferredoxin Eco28_RS04095 IPR012257 Glycolate oxidase, iron-sulphur subunit Eco28_RS04095 IPR004017 Cysteine-rich domain Eco28_RS04095 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS04100 IPR005624 Haem-degrading Eco28_RS04100 IPR038084 GlcG-like domain superfamily Eco28_RS04105 IPR001465 Malate synthase Eco28_RS04105 IPR023310 Malate synthase G, beta sub-domain Eco28_RS04105 IPR006253 Malate synthase G Eco28_RS04105 IPR011076 Malate synthase-like superfamily Eco28_RS04110 IPR003804 L-lactate permease Eco28_RS04120 IPR035423 M60-like domain, N-terminal Eco28_RS04120 IPR042279 Peptidase M60, enhancin-like domain 3 Eco28_RS04120 IPR031161 Peptidase family M60 domain Eco28_RS04120 IPR025385 Domain of unknown function DUF4092 Eco28_RS04130 IPR010627 Peptidase A24A, N-terminal Eco28_RS04130 IPR014032 Peptidase A24A, prepilin type IV, bacterial Eco28_RS04130 IPR000045 Prepilin type IV endopeptidase, peptidase domain Eco28_RS04135 IPR016502 Type II secretion system (T2SS) pilotin, S protein Eco28_RS04140 IPR036034 PDZ superfamily Eco28_RS04140 IPR024961 Type II secretion system protein C, N-terminal Eco28_RS04140 IPR001639 Type II secretion system protein C Eco28_RS04145 IPR004846 Type II/III secretion system Eco28_RS04145 IPR038591 NolW-like superfamily Eco28_RS04145 IPR005644 NolW-like Eco28_RS04145 IPR001775 GspD/PilQ family Eco28_RS04145 IPR013356 Type II secretion system GspD Eco28_RS04150 IPR013369 Type II secretion system GspE Eco28_RS04150 IPR042181 Type II secretion system, protein E, N-terminal Eco28_RS04150 IPR001482 Type II/IV secretion system protein Eco28_RS04150 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04150 IPR003593 AAA+ ATPase domain Eco28_RS04150 IPR037257 General secretory system II, protein E, N-terminal superfamily Eco28_RS04155 IPR042094 Type II secretion system F domain superfamily Eco28_RS04155 IPR001992 Type II secretion system conserved site Eco28_RS04155 IPR018076 Type II secretion system F domain Eco28_RS04155 IPR003004 GspF/PilC family Eco28_RS04155 IPR011850 General secretion pathway protein F Eco28_RS04160 IPR010054 General secretion pathway protein G Eco28_RS04160 IPR000983 Bacterial general secretion pathway protein G-type pilin Eco28_RS04160 IPR013545 Type II secretion system protein G Eco28_RS04160 IPR012902 Prokaryotic N-terminal methylation site Eco28_RS04165 IPR022346 General secretion pathway, GspH Eco28_RS04165 IPR002416 Type II secretion system protein H Eco28_RS04165 IPR012902 Prokaryotic N-terminal methylation site Eco28_RS04170 IPR003413 Type II secretion system protein I domain Eco28_RS04170 IPR010052 Type II secretion system protein I Eco28_RS04170 IPR012902 Prokaryotic N-terminal methylation site Eco28_RS04175 IPR010055 Type II secretion system protein J Eco28_RS04175 IPR012902 Prokaryotic N-terminal methylation site Eco28_RS04180 IPR005628 General secretion pathway protein K Eco28_RS04180 IPR038072 GspK, central domain superfamily Eco28_RS04185 IPR007812 Type II secretion system protein L Eco28_RS04185 IPR025691 GspL periplasmic domain Eco28_RS04190 IPR023229 Type II secretion system protein M, periplasmic domain superfamily Eco28_RS04190 IPR007690 Type II secretion system, protein M Eco28_RS04235 IPR026866 Protein CR006, P-loop domain Eco28_RS04235 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04260 IPR009610 CbtA toxin of type IV toxin-antitoxin system Eco28_RS04265 IPR009320 Antitoxin CbeA Eco28_RS04265 IPR038025 Antitoxin CbeA superfamily Eco28_RS04270 IPR009329 Protein of unknown function DUF987 Eco28_RS04275 IPR020891 Uncharacterised protein family UPF0758, conserved site Eco28_RS04275 IPR001405 Uncharacterised protein family UPF0758 Eco28_RS04275 IPR025657 RadC-like JAB domain Eco28_RS04275 IPR037518 MPN domain Eco28_RS04280 IPR042297 Antirestriction domain superfamily Eco28_RS04280 IPR004914 Antirestriction protein Eco28_RS04285 IPR026325 Protein of unknown function DUF932 Eco28_RS04290 IPR038612 YkfF-like domain superfamily Eco28_RS04290 IPR009253 Protein of unknown function DUF905 Eco28_RS04300 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS04300 IPR026881 WYL domain Eco28_RS04300 IPR001034 DeoR-type HTH domain Eco28_RS04305 IPR006073 GTP binding domain Eco28_RS04305 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04335 IPR027454 Histone-like protein H-NS, N-terminal Eco28_RS04335 IPR001801 Histone-like protein H-NS Eco28_RS04335 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily Eco28_RS04335 IPR027444 Histone-like protein H-NS, C-terminal domain Eco28_RS04380 IPR012337 Ribonuclease H-like superfamily Eco28_RS04380 IPR001584 Integrase, catalytic core Eco28_RS04380 IPR025948 HTH-like domain Eco28_RS04380 IPR036397 Ribonuclease H superfamily Eco28_RS04400 IPR000477 Reverse transcriptase domain Eco28_RS04415 IPR038965 Transposase InsF-like Eco28_RS04420 IPR027385 Outer membrane protein beta-barrel domain Eco28_RS04420 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS04435 IPR008490 Transposase InsH, N-terminal Eco28_RS04435 IPR002559 Transposase, IS4-like Eco28_RS04440 IPR015915 Kelch-type beta propeller Eco28_RS04440 IPR019936 Mutatrotase, YjhT-like Eco28_RS04465 IPR023667 NAD-dependent malic enzyme, proteobacteria Eco28_RS04465 IPR015884 Malic enzyme, conserved site Eco28_RS04465 IPR001891 Malic oxidoreductase Eco28_RS04465 IPR037062 Malic enzyme, N-terminal domain superfamily Eco28_RS04465 IPR012302 Malic enzyme, NAD-binding Eco28_RS04465 IPR036291 NAD(P)-binding domain superfamily Eco28_RS04465 IPR012301 Malic enzyme, N-terminal domain Eco28_RS04470 IPR018385 C4-dicarboxylate anaerobic carrier-like Eco28_RS04470 IPR004669 C4-dicarboxylate anaerobic carrier Eco28_RS04475 IPR009057 Homeobox-like domain superfamily Eco28_RS04475 IPR000281 Helix-turn-helix protein RpiR Eco28_RS04475 IPR035472 RpiR-like, SIS domain Eco28_RS04475 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS04475 IPR001347 Sugar isomerase (SIS) Eco28_RS04480 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase Eco28_RS04480 IPR024083 Fumarase/histidase, N-terminal Eco28_RS04480 IPR020557 Fumarate lyase, conserved site Eco28_RS04480 IPR008948 L-Aspartase-like Eco28_RS04480 IPR019468 Adenylosuccinate lyase C-terminal Eco28_RS04480 IPR022761 Fumarate lyase, N-terminal Eco28_RS04480 IPR000362 Fumarate lyase family Eco28_RS04520 IPR006061 Solute-binding family 1, conserved site Eco28_RS04520 IPR006059 Bacterial extracellular solute-binding protein Eco28_RS04540 IPR002104 Integrase, catalytic domain Eco28_RS04540 IPR025166 Integrase, DNA-binding domain Eco28_RS04540 IPR010998 Integrase/recombinase, N-terminal Eco28_RS04540 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS04540 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS04540 IPR038488 Integrase, DNA-binding domain superfamily Eco28_RS04550 IPR007563 Protein of unknown function DUF554 Eco28_RS04560 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily Eco28_RS04560 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal Eco28_RS04560 IPR027464 Ornithine decarboxylase, N-terminal Eco28_RS04560 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS04560 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS04560 IPR011193 Ornithine/lysine/arginine decarboxylase Eco28_RS04560 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS04560 IPR011006 CheY-like superfamily Eco28_RS04560 IPR000310 Orn/Lys/Arg decarboxylase, major domain Eco28_RS04560 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal Eco28_RS04565 IPR036259 MFS transporter superfamily Eco28_RS04565 IPR020846 Major facilitator superfamily domain Eco28_RS04565 IPR033667 Nucleoside permease NupG Eco28_RS04565 IPR004740 Nucleoside:H+ symporter Eco28_RS04570 IPR000189 Prokaryotic transglycosylase, active site Eco28_RS04570 IPR024570 Murein transglycosylase-C, N-terminal Eco28_RS04570 IPR023664 Murein transglycosylase-C Eco28_RS04570 IPR023346 Lysozyme-like domain superfamily Eco28_RS04570 IPR008258 Transglycosylase SLT domain 1 Eco28_RS04575 IPR007457 Fe(II) trafficking protein YggX Eco28_RS04575 IPR036766 Fe(II) trafficking protein YggX superfamily Eco28_RS04580 IPR000445 Helix-hairpin-helix motif Eco28_RS04580 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Eco28_RS04580 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS04580 IPR029119 MutY, C-terminal Eco28_RS04580 IPR005760 A/G-specific adenine glycosylase MutY Eco28_RS04580 IPR011257 DNA glycosylase Eco28_RS04580 IPR004036 Endonuclease III-like, conserved site-2 Eco28_RS04580 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif Eco28_RS04580 IPR004035 Endonuclease III, iron-sulphur binding site Eco28_RS04580 IPR003265 HhH-GPD domain Eco28_RS04590 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS04590 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type Eco28_RS04595 IPR007416 Protein of unknown function DUF469 Eco28_RS04600 IPR021307 Protein of unknown function DUF2884 Eco28_RS04605 IPR020827 Asparaginase/glutaminase, active site 1 Eco28_RS04605 IPR027474 L-asparaginase, N-terminal Eco28_RS04605 IPR027473 L-asparaginase, C-terminal Eco28_RS04605 IPR040919 Asparaginase/glutaminase, C-terminal Eco28_RS04605 IPR027475 Asparaginase/glutaminase, active site 2 Eco28_RS04605 IPR037152 L-asparaginase, N-terminal domain superfamily Eco28_RS04605 IPR036152 Asparaginase/glutaminase-like superfamily Eco28_RS04605 IPR004550 L-asparaginase, type II Eco28_RS04605 IPR006034 Asparaginase/glutaminase-like Eco28_RS04610 IPR009592 Protein of unknown function DUF1202 Eco28_RS04615 IPR023404 Radical SAM, alpha/beta horseshoe Eco28_RS04615 IPR034505 Anaerobic coproporphyrinogen-III oxidase Eco28_RS04615 IPR006638 Elp3/MiaB/NifB Eco28_RS04615 IPR010723 HemN, C-terminal Eco28_RS04615 IPR004559 Heme chaperone HemW-like Eco28_RS04615 IPR007197 Radical SAM Eco28_RS04620 IPR029001 Inosine triphosphate pyrophosphatase-like Eco28_RS04620 IPR002637 Ham1-like protein Eco28_RS04620 IPR020922 dITP/XTP pyrophosphatase Eco28_RS04625 IPR003746 Protein of unknown function DUF167 Eco28_RS04625 IPR036591 YggU-like superfamily Eco28_RS04625 IPR005228 Conserved hypothetical protein CHP00251 Eco28_RS04630 IPR003425 CCB3/YggT Eco28_RS04635 IPR011078 Pyridoxal phosphate homeostasis protein Eco28_RS04635 IPR029066 PLP-binding barrel Eco28_RS04635 IPR001608 Alanine racemase, N-terminal Eco28_RS04640 IPR001482 Type II/IV secretion system protein Eco28_RS04640 IPR003593 AAA+ ATPase domain Eco28_RS04640 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04640 IPR006321 Pilus retraction protein PilT Eco28_RS04645 IPR037027 YqgF/RNase H-like domain superfamily Eco28_RS04645 IPR006641 YqgF/RNase H-like domain Eco28_RS04645 IPR005227 Putative pre-16S rRNA nuclease Eco28_RS04645 IPR012337 Ribonuclease H-like superfamily Eco28_RS04650 IPR003774 Protein of unknown function UPF0301 Eco28_RS04655 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS04655 IPR006284 Glutathione synthetase, prokaryotic Eco28_RS04655 IPR004218 Prokaryotic glutathione synthetase, ATP-binding Eco28_RS04655 IPR004215 Prokaryotic glutathione synthetase, N-terminal Eco28_RS04655 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS04655 IPR011761 ATP-grasp fold Eco28_RS04660 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Eco28_RS04660 IPR006700 Ribosomal RNA small subunit methyltransferase E Eco28_RS04660 IPR015947 PUA-like superfamily Eco28_RS04660 IPR029028 Alpha/beta knot methyltransferases Eco28_RS04665 IPR007346 Endonuclease I Eco28_RS04670 IPR006640 SprT-like Eco28_RS04670 IPR023483 Uncharacterised protein family SprT Eco28_RS04670 IPR035240 SprT-like, zinc ribbon domain Eco28_RS04675 IPR036259 MFS transporter superfamily Eco28_RS04675 IPR003663 Sugar/inositol transporter Eco28_RS04675 IPR005829 Sugar transporter, conserved site Eco28_RS04675 IPR020846 Major facilitator superfamily domain Eco28_RS04675 IPR005828 Major facilitator, sugar transporter-like Eco28_RS04680 IPR022631 S-adenosylmethionine synthetase, conserved site Eco28_RS04680 IPR022630 S-adenosylmethionine synthetase, C-terminal Eco28_RS04680 IPR022629 S-adenosylmethionine synthetase, central domain Eco28_RS04680 IPR022628 S-adenosylmethionine synthetase, N-terminal Eco28_RS04680 IPR002133 S-adenosylmethionine synthetase Eco28_RS04680 IPR022636 S-adenosylmethionine synthetase superfamily Eco28_RS04690 IPR020102 Uncharacterised protein YqgC-like Eco28_RS04695 IPR020196 Uncharacterised protein family YqgB Eco28_RS04700 IPR002985 Arginine decarboxylase Eco28_RS04700 IPR041128 Arginine decarboxylase, C-terminal helical Eco28_RS04700 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal Eco28_RS04700 IPR000183 Ornithine/DAP/Arg decarboxylase Eco28_RS04700 IPR040634 Arginine decarboxylase, helical bundle domain Eco28_RS04700 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Eco28_RS04700 IPR029066 PLP-binding barrel Eco28_RS04700 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Eco28_RS04700 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Eco28_RS04710 IPR020855 Ureohydrolase, manganese-binding site Eco28_RS04710 IPR005925 Agmatinase-related Eco28_RS04710 IPR023696 Ureohydrolase domain superfamily Eco28_RS04710 IPR006035 Ureohydrolase Eco28_RS04710 IPR023694 Agmatinase Eco28_RS04715 IPR001915 Peptidase M48 Eco28_RS04720 IPR005475 Transketolase-like, pyrimidine-binding domain Eco28_RS04720 IPR029061 Thiamin diphosphate-binding fold Eco28_RS04720 IPR033247 Transketolase family Eco28_RS04720 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Eco28_RS04720 IPR005474 Transketolase, N-terminal Eco28_RS04720 IPR020826 Transketolase binding site Eco28_RS04720 IPR005478 Transketolase, bacterial-like Eco28_RS04720 IPR033248 Transketolase, C-terminal domain Eco28_RS04725 IPR001107 Band 7 domain Eco28_RS04725 IPR010200 HflC Eco28_RS04725 IPR036013 Band 7/SPFH domain superfamily Eco28_RS04735 IPR016152 Phosphotransferase/anion transporter Eco28_RS04735 IPR002178 PTS EIIA type-2 domain Eco28_RS04740 IPR003352 Phosphotransferase system, EIIC Eco28_RS04740 IPR013014 Phosphotransferase system, EIIC component, type 2 Eco28_RS04740 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC Eco28_RS04740 IPR013011 Phosphotransferase system, EIIB component, type 2 Eco28_RS04740 IPR036095 PTS system IIB component-like superfamily Eco28_RS04740 IPR029503 Phosphotransferase system EIIB component, mannitol-specific Eco28_RS04740 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS04745 IPR036291 NAD(P)-binding domain superfamily Eco28_RS04745 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS04745 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS04745 IPR011032 GroES-like superfamily Eco28_RS04750 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase Eco28_RS04755 IPR007761 Mannitol repressor MtlR-like Eco28_RS04755 IPR038026 MtlR-like superfamily Eco28_RS04760 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04765 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04765 IPR015856 ABC transporter, CbiO/EcfA subunit Eco28_RS04765 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 Eco28_RS04765 IPR017871 ABC transporter, conserved site Eco28_RS04765 IPR003439 ABC transporter-like Eco28_RS04765 IPR003593 AAA+ ATPase domain Eco28_RS04770 IPR003593 AAA+ ATPase domain Eco28_RS04770 IPR003439 ABC transporter-like Eco28_RS04770 IPR017871 ABC transporter, conserved site Eco28_RS04770 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04795 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site Eco28_RS04795 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family Eco28_RS04795 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain Eco28_RS04795 IPR036291 NAD(P)-binding domain superfamily Eco28_RS04795 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain Eco28_RS04795 IPR006422 D-erythrose-4-phosphate dehydrogenase Eco28_RS04800 IPR015824 Phosphoglycerate kinase, N-terminal Eco28_RS04800 IPR036043 Phosphoglycerate kinase superfamily Eco28_RS04800 IPR015911 Phosphoglycerate kinase, conserved site Eco28_RS04800 IPR001576 Phosphoglycerate kinase Eco28_RS04805 IPR013785 Aldolase-type TIM barrel Eco28_RS04805 IPR000771 Fructose-bisphosphate aldolase, class-II Eco28_RS04805 IPR006411 Fructose-bisphosphate aldolase, class II, yeast/E. coli subtype Eco28_RS04810 IPR010920 LSM domain superfamily Eco28_RS04810 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Eco28_RS04810 IPR006686 Mechanosensitive ion channel MscS, conserved site Eco28_RS04810 IPR011066 Mechanosensitive ion channel MscS, C-terminal Eco28_RS04810 IPR008910 Conserved TM helix Eco28_RS04810 IPR006685 Mechanosensitive ion channel MscS Eco28_RS04810 IPR023408 Mechanosensitive ion channel MscS domain superfamily Eco28_RS04815 IPR023445 Arginine exporter protein ArgO, enterobacteria Eco28_RS04815 IPR001123 Amino acid exporter protein, LeuE-type Eco28_RS04815 IPR004777 L-lysine exporter/arginine exporter Eco28_RS04820 IPR007497 Protein of unknown function DUF541 Eco28_RS04825 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS04825 IPR000847 Transcription regulator HTH, LysR Eco28_RS04825 IPR005119 LysR, substrate-binding Eco28_RS04825 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS04830 IPR003702 Acetyl-CoA hydrolase/transferase Eco28_RS04830 IPR017821 Succinate CoA transferase Eco28_RS04830 IPR038460 Acetyl-CoA hydrolase/transferase, C-terminal domain superfamily Eco28_RS04830 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain Eco28_RS04830 IPR037171 NagB/RpiA transferase-like Eco28_RS04835 IPR001753 Enoyl-CoA hydratase/isomerase Eco28_RS04835 IPR014748 Enoyl-CoA hydratase, C-terminal Eco28_RS04835 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site Eco28_RS04835 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS04840 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS04840 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB Eco28_RS04845 IPR036724 Cobalamin-binding domain superfamily Eco28_RS04845 IPR006158 Cobalamin (vitamin B12)-binding domain Eco28_RS04845 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic Eco28_RS04845 IPR006159 Methylmalonyl-CoA mutase, C-terminal Eco28_RS04845 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic Eco28_RS04845 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic Eco28_RS04855 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS04855 IPR017685 HTH-type transcriptional regulator ArgP Eco28_RS04855 IPR023490 HTH-type transcriptional regulator ArgP, Gammaproteobacteria Eco28_RS04855 IPR005119 LysR, substrate-binding Eco28_RS04855 IPR000847 Transcription regulator HTH, LysR Eco28_RS04855 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS04860 IPR005119 LysR, substrate-binding Eco28_RS04865 IPR037171 NagB/RpiA transferase-like Eco28_RS04865 IPR004788 Ribose 5-phosphate isomerase, type A Eco28_RS04865 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup Eco28_RS04870 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS04870 IPR036291 NAD(P)-binding domain superfamily Eco28_RS04870 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Eco28_RS04870 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Eco28_RS04870 IPR002912 ACT domain Eco28_RS04870 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Eco28_RS04890 IPR002698 5-formyltetrahydrofolate cyclo-ligase Eco28_RS04890 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily Eco28_RS04890 IPR037171 NagB/RpiA transferase-like Eco28_RS04900 IPR007838 Cell division protein ZapA-like Eco28_RS04900 IPR023771 Cell division protein ZapA, eubacteria Eco28_RS04900 IPR036192 Cell division protein ZapA-like superfamily Eco28_RS04910 IPR011978 Uncharacterised protein family UPF0149 Eco28_RS04910 IPR036255 YgfB-like superfamily Eco28_RS04915 IPR007865 Aminopeptidase P, N-terminal Eco28_RS04915 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site Eco28_RS04915 IPR001714 Peptidase M24, methionine aminopeptidase Eco28_RS04915 IPR000994 Peptidase M24 Eco28_RS04915 IPR036005 Creatinase/aminopeptidase-like Eco28_RS04915 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Eco28_RS04920 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site Eco28_RS04920 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase Eco28_RS04920 IPR002938 FAD-binding domain Eco28_RS04920 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS04920 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 Eco28_RS04925 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 Eco28_RS04925 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site Eco28_RS04925 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS04925 IPR002938 FAD-binding domain Eco28_RS04930 IPR022903 Glycine cleavage system T protein, bacteria Eco28_RS04930 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 Eco28_RS04930 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Eco28_RS04930 IPR006222 Aminomethyltransferase, folate-binding domain Eco28_RS04930 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain Eco28_RS04930 IPR028896 Aminomethyltransferase-like Eco28_RS04930 IPR006223 Glycine cleavage system T protein Eco28_RS04935 IPR002930 Glycine cleavage system H-protein Eco28_RS04935 IPR033753 Glycine cleavage system H-protein/Simiate Eco28_RS04935 IPR017453 Glycine cleavage system H-protein, subgroup Eco28_RS04935 IPR011053 Single hybrid motif Eco28_RS04935 IPR000089 Biotin/lipoyl attachment Eco28_RS04935 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Eco28_RS04940 IPR020581 Glycine cleavage system P protein Eco28_RS04940 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS04940 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS04940 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS04940 IPR003437 Glycine dehydrogenase (decarboxylating) Eco28_RS04945 IPR018120 Glycoside hydrolase family 1, active site Eco28_RS04945 IPR001360 Glycoside hydrolase family 1 Eco28_RS04945 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site Eco28_RS04945 IPR017853 Glycoside hydrolase superfamily Eco28_RS04950 IPR008314 Uncharacterised conserved protein UCP029143 Eco28_RS04950 IPR007374 ASCH domain Eco28_RS04950 IPR015947 PUA-like superfamily Eco28_RS04955 IPR005744 Hly-III Eco28_RS04955 IPR004254 AdipoR/Haemolysin-III-related Eco28_RS04960 IPR017703 YgfZ/GcvT conserved site Eco28_RS04960 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Eco28_RS04960 IPR023758 tRNA-modifying protein YgfZ Eco28_RS04960 IPR006222 Aminomethyltransferase, folate-binding domain Eco28_RS04970 IPR005631 Flavinator of succinate dehydrogenase Eco28_RS04970 IPR036714 Flavinator of succinate dehydrogenase superfamily Eco28_RS04975 IPR009883 Inner membrane protein YgfX Eco28_RS04980 IPR010086 Flavodoxin, long chain Eco28_RS04980 IPR001226 Flavodoxin, conserved site Eco28_RS04980 IPR029039 Flavoprotein-like superfamily Eco28_RS04980 IPR008254 Flavodoxin/nitric oxide synthase Eco28_RS04985 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS04985 IPR011932 Tyrosine recombinase XerD Eco28_RS04985 IPR023009 Tyrosine recombinase XerC/XerD Eco28_RS04985 IPR010998 Integrase/recombinase, N-terminal Eco28_RS04985 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS04985 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS04985 IPR002104 Integrase, catalytic domain Eco28_RS04990 IPR013766 Thioredoxin domain Eco28_RS04990 IPR017937 Thioredoxin, conserved site Eco28_RS04990 IPR036249 Thioredoxin-like superfamily Eco28_RS04990 IPR012336 Thioredoxin-like fold Eco28_RS04990 IPR033954 Disulphide bond isomerase, DsbC/G Eco28_RS04990 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal Eco28_RS04990 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily Eco28_RS04995 IPR001667 DDH domain Eco28_RS04995 IPR041122 RecJ, OB domain Eco28_RS04995 IPR038763 DHH phosphoesterase superfamily Eco28_RS04995 IPR003156 DHHA1 domain Eco28_RS04995 IPR004610 Bacterial RecJ exonuclease Eco28_RS05005 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS05005 IPR002313 Lysine-tRNA ligase, class II Eco28_RS05005 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II Eco28_RS05005 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal Eco28_RS05005 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Eco28_RS05005 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Eco28_RS05005 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS05010 IPR000086 NUDIX hydrolase domain Eco28_RS05010 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS05010 IPR011876 Isopentenyl-diphosphate delta-isomerase, type 1 Eco28_RS05020 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS05020 IPR017588 Uric acid permease UacT-like Eco28_RS05020 IPR006042 Xanthine/uracil permease Eco28_RS05030 IPR009051 Alpha-helical ferredoxin Eco28_RS05030 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 Eco28_RS05030 IPR023753 FAD/NAD(P)-binding domain Eco28_RS05030 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS05030 IPR028261 Dihydroprymidine dehydrogenase domain II Eco28_RS05030 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS05030 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS05035 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS05035 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS05040 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS05045 IPR032466 Metal-dependent hydrolase Eco28_RS05045 IPR014311 Guanine deaminase Eco28_RS05045 IPR006680 Amidohydrolase-related Eco28_RS05045 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS05050 IPR006042 Xanthine/uracil permease Eco28_RS05050 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS05055 IPR017699 Molybdenum-binding protein YgfN/XdhD Eco28_RS05055 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Eco28_RS05055 IPR036884 [2Fe-2S]-binding domain superfamily Eco28_RS05055 IPR002888 [2Fe-2S]-binding Eco28_RS05055 IPR016208 Aldehyde oxidase/xanthine dehydrogenase Eco28_RS05055 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily Eco28_RS05055 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily Eco28_RS05055 IPR012675 Beta-grasp domain superfamily Eco28_RS05055 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding Eco28_RS05060 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS05060 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily Eco28_RS05060 IPR005107 CO dehydrogenase flavoprotein, C-terminal Eco28_RS05060 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS05060 IPR002346 Molybdopterin dehydrogenase, FAD-binding Eco28_RS05060 IPR017698 Probable selenate reductase, FAD-binding subunit Eco28_RS05060 IPR016166 FAD-binding domain, PCMH-type Eco28_RS05065 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS05065 IPR017700 Putative aminohydrolase SsnA Eco28_RS05065 IPR032466 Metal-dependent hydrolase Eco28_RS05065 IPR006680 Amidohydrolase-related Eco28_RS05070 IPR028261 Dihydroprymidine dehydrogenase domain II Eco28_RS05070 IPR017701 Putative selenate reductase YgfK Eco28_RS05070 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS05070 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS05070 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS05070 IPR023753 FAD/NAD(P)-binding domain Eco28_RS05070 IPR009051 Alpha-helical ferredoxin Eco28_RS05075 IPR017696 Molybdenum cofactor cytidylyltransferase Eco28_RS05075 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS05075 IPR025877 MobA-like NTP transferase Eco28_RS05080 IPR017587 Putative selenium-dependent hydroxylase accessory protein YqeC Eco28_RS05080 IPR036565 Mur-like, catalytic domain superfamily Eco28_RS05085 IPR003777 XdhC- CoxI Eco28_RS05085 IPR027051 XdhC Rossmann domain Eco28_RS05085 IPR017695 Selenium-dependent molybdenum hydroxylase system protein, YqeB family Eco28_RS05090 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS05090 IPR003964 Carbamate kinase Eco28_RS05090 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS05095 IPR006680 Amidohydrolase-related Eco28_RS05095 IPR023766 D-phenylhydantoinase Eco28_RS05095 IPR011778 Hydantoinase/dihydropyrimidinase Eco28_RS05095 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS05095 IPR032466 Metal-dependent hydrolase Eco28_RS05100 IPR011650 Peptidase M20, dimerisation domain Eco28_RS05100 IPR036264 Bacterial exopeptidase dimerisation domain Eco28_RS05100 IPR002933 Peptidase M20 Eco28_RS05100 IPR017706 Peptidase M20/DapE, YgeY Eco28_RS05100 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site Eco28_RS05105 IPR019871 Diaminopropionate ammonia-lyase, subgroup Eco28_RS05105 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Eco28_RS05105 IPR001926 Pyridoxal-phosphate dependent enzyme Eco28_RS05105 IPR010081 Diaminopropionate ammonia-lyase Eco28_RS05110 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily Eco28_RS05110 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain Eco28_RS05110 IPR017702 Putative carbamoyltransferase YgeW Eco28_RS05110 IPR006130 Aspartate/ornithine carbamoyltransferase Eco28_RS05110 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding Eco28_RS05115 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS05115 IPR002197 DNA binding HTH domain, Fis-type Eco28_RS05115 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS05115 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS05115 IPR035965 PAS domain superfamily Eco28_RS05115 IPR000014 PAS domain Eco28_RS05115 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05115 IPR009057 Homeobox-like domain superfamily Eco28_RS05115 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS05115 IPR003593 AAA+ ATPase domain Eco28_RS05120 IPR002888 [2Fe-2S]-binding Eco28_RS05120 IPR012675 Beta-grasp domain superfamily Eco28_RS05120 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS05120 IPR036884 [2Fe-2S]-binding domain superfamily Eco28_RS05120 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS05125 IPR002346 Molybdopterin dehydrogenase, FAD-binding Eco28_RS05125 IPR005107 CO dehydrogenase flavoprotein, C-terminal Eco28_RS05125 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily Eco28_RS05125 IPR016166 FAD-binding domain, PCMH-type Eco28_RS05125 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS05125 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS05130 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding Eco28_RS05130 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily Eco28_RS05130 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Eco28_RS05130 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily Eco28_RS05140 IPR016047 Peptidase M23 Eco28_RS05140 IPR036779 LysM domain superfamily Eco28_RS05140 IPR018392 LysM domain Eco28_RS05140 IPR011055 Duplicated hybrid motif Eco28_RS05150 IPR008928 Six-hairpin glycosidase superfamily Eco28_RS05150 IPR012341 Six-hairpin glycosidase-like superfamily Eco28_RS05160 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS05160 IPR009057 Homeobox-like domain superfamily Eco28_RS05160 IPR018062 HTH domain AraC-type, conserved site Eco28_RS05165 IPR003522 Type III secretion system outer membrane pore YscC/HrcC Eco28_RS05165 IPR005644 NolW-like Eco28_RS05165 IPR038591 NolW-like superfamily Eco28_RS05165 IPR004846 Type II/III secretion system Eco28_RS05165 IPR004845 Type II secretion system GspD, conserved site Eco28_RS05170 IPR010812 Hypersensitivity response secretion-like, HrpJ Eco28_RS05170 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC Eco28_RS05170 IPR003520 Salmonella/Shigella invasion protein E Eco28_RS05175 IPR042196 FHIPEP, domain 4 Eco28_RS05175 IPR042193 FHIPEP, domain 3 Eco28_RS05175 IPR006302 Type III secretion protein HrcV Eco28_RS05175 IPR025505 FHIPEP conserved site Eco28_RS05175 IPR042194 FHIPEP, domain 1 Eco28_RS05175 IPR001712 Type III secretion system FHIPEP Eco28_RS05180 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Eco28_RS05180 IPR003593 AAA+ ATPase domain Eco28_RS05180 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05180 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain Eco28_RS05180 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Eco28_RS05180 IPR005714 ATPase, type III secretion system, FliI/YscN Eco28_RS05180 IPR040627 T3SS EscN ATPase, C-terminal Eco28_RS05200 IPR005838 Type III secretion system inner membrane P protein Eco28_RS05200 IPR005773 Yop virulence translocation protein R Eco28_RS05205 IPR006306 Type III secretion protein HrpO Eco28_RS05205 IPR002191 Bacterial export protein family 3 Eco28_RS05210 IPR006304 Type III secretion protein SpaR/YscT Eco28_RS05210 IPR002010 Type III secretion system inner membrane R protein Eco28_RS05215 IPR006135 Type III secretion system substrate exporter Eco28_RS05215 IPR006307 Type III exporter system, secretion apparatus protein BsaZ Eco28_RS05215 IPR029025 Type III secretion system substrate exporter, C-terminal Eco28_RS05230 IPR013387 Type III secretion system, PrgH/EprH Eco28_RS05230 IPR019029 Type III secretion system, PrgH/EprH-like Eco28_RS05235 IPR021123 Type III secretion, needle-protein-like Eco28_RS05235 IPR037203 Type III secretion, needle-protein-like superfamily Eco28_RS05235 IPR011841 Type III secretion system, needle protein Eco28_RS05245 IPR006182 Secretory protein YscJ/FliF Eco28_RS05245 IPR003282 Type III secretion system lipoprotein HrcJ/YscJ Eco28_RS05250 IPR013388 Type III secretion apparatus protein OrgA/MxiK Eco28_RS05260 IPR011006 CheY-like superfamily Eco28_RS05260 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS05260 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS05260 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS05265 IPR008258 Transglycosylase SLT domain 1 Eco28_RS05265 IPR023346 Lysozyme-like domain superfamily Eco28_RS05275 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS05275 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS05275 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS05275 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS05275 IPR019734 Tetratricopeptide repeat Eco28_RS05275 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS05280 IPR011716 Tetratricopeptide TPR-3 Eco28_RS05280 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS05280 IPR005415 Type III secretion system, low calcium response, chaperone LcrH/SycD Eco28_RS05280 IPR016379 Type III secretion system, low calcium response, chaperone LcrH/SycD, subgroup Eco28_RS05315 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS05315 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS05315 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS05320 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS05320 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS05325 IPR018227 Amino acid/polyamine transporter 2 Eco28_RS05335 IPR018227 Amino acid/polyamine transporter 2 Eco28_RS05340 IPR020610 Thiolase, active site Eco28_RS05340 IPR016039 Thiolase-like Eco28_RS05340 IPR020613 Thiolase, conserved site Eco28_RS05340 IPR020617 Thiolase, C-terminal Eco28_RS05340 IPR020616 Thiolase, N-terminal Eco28_RS05340 IPR020615 Thiolase, acyl-enzyme intermediate active site Eco28_RS05340 IPR002155 Thiolase Eco28_RS05345 IPR007045 5-keto 4-deoxyuronate isomerase Eco28_RS05345 IPR011051 RmlC-like cupin domain superfamily Eco28_RS05345 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal Eco28_RS05345 IPR021120 KduI/IolB isomerase Eco28_RS05345 IPR014710 RmlC-like jelly roll fold Eco28_RS05350 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS05350 IPR036291 NAD(P)-binding domain superfamily Eco28_RS05350 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS05350 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase Eco28_RS05355 IPR005829 Sugar transporter, conserved site Eco28_RS05355 IPR003663 Sugar/inositol transporter Eco28_RS05355 IPR005828 Major facilitator, sugar transporter-like Eco28_RS05355 IPR020846 Major facilitator superfamily domain Eco28_RS05355 IPR036259 MFS transporter superfamily Eco28_RS05360 IPR004380 Aspartate racemase Eco28_RS05360 IPR001920 Asp/Glu racemase Eco28_RS05360 IPR033134 Asp/Glu racemase, active site 2 Eco28_RS05360 IPR015942 Asp/Glu/hydantoin racemase Eco28_RS05360 IPR018187 Asp/Glu racemase, active site 1 Eco28_RS05365 IPR037414 Transcriptional activator protein LysR, PBP2 domain Eco28_RS05365 IPR005119 LysR, substrate-binding Eco28_RS05365 IPR000847 Transcription regulator HTH, LysR Eco28_RS05365 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS05365 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS05370 IPR002986 Diaminopimelate decarboxylase, LysA Eco28_RS05370 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal Eco28_RS05370 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Eco28_RS05370 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Eco28_RS05370 IPR000183 Ornithine/DAP/Arg decarboxylase Eco28_RS05370 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal Eco28_RS05370 IPR029066 PLP-binding barrel Eco28_RS05370 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Eco28_RS05375 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS05375 IPR000843 LacI-type HTH domain Eco28_RS05375 IPR028082 Periplasmic binding protein-like I Eco28_RS05380 IPR020845 AMP-binding, conserved site Eco28_RS05380 IPR002123 Phospholipid/glycerol acyltransferase Eco28_RS05380 IPR023775 Bifunctional protein Aas Eco28_RS05380 IPR000873 AMP-dependent synthetase/ligase Eco28_RS05380 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS05385 IPR036259 MFS transporter superfamily Eco28_RS05385 IPR023727 Lysophospholipid transporter LplT Eco28_RS05385 IPR011701 Major facilitator superfamily Eco28_RS05390 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS05390 IPR020471 Aldo/keto reductase Eco28_RS05390 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS05395 IPR010920 LSM domain superfamily Eco28_RS05395 IPR010305 Protein of unknown function DUF903 Eco28_RS05400 IPR005496 Integral membrane protein TerC Eco28_RS05405 IPR011335 Restriction endonuclease type II-like Eco28_RS05405 IPR037057 DNA mismatch repair MutH/Restriction endonuclease, type II superfamily Eco28_RS05405 IPR011337 DNA mismatch repair MutH/Restriction endonuclease, type II Eco28_RS05405 IPR004230 DNA mismatch repair protein MutH Eco28_RS05410 IPR020476 NUDIX hydrolase Eco28_RS05410 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS05410 IPR022927 RNA pyrophosphohydrolase RppH Eco28_RS05410 IPR000086 NUDIX hydrolase domain Eco28_RS05410 IPR020084 NUDIX hydrolase, conserved site Eco28_RS05415 IPR008279 PEP-utilising enzyme, mobile domain Eco28_RS05415 IPR029016 GAF-like domain superfamily Eco28_RS05415 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS05415 IPR036618 PtsI, HPr-binding domain superfamily Eco28_RS05415 IPR008731 Phosphotransferase system, enzyme I N-terminal Eco28_RS05415 IPR006318 Phosphotransferase system, enzyme I-like Eco28_RS05415 IPR036637 Phosphohistidine domain superfamily Eco28_RS05415 IPR023151 PEP-utilising enzyme, conserved site Eco28_RS05415 IPR000121 PEP-utilising enzyme, C-terminal Eco28_RS05415 IPR018274 PEP-utilising enzyme, active site Eco28_RS05415 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS05415 IPR003018 GAF domain Eco28_RS05420 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt Eco28_RS05425 IPR000398 Thymidylate synthase Eco28_RS05425 IPR020940 Thymidylate synthase, active site Eco28_RS05425 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily Eco28_RS05425 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain Eco28_RS05430 IPR012902 Prokaryotic N-terminal methylation site Eco28_RS05435 IPR016419 Prepilin peptidase-dependent protein B, predicted Eco28_RS05435 IPR012902 Prokaryotic N-terminal methylation site Eco28_RS05440 IPR019652 Protein of unknown function DUF2509 Eco28_RS05445 IPR012902 Prokaryotic N-terminal methylation site Eco28_RS05445 IPR022204 Prepilin peptidase dependent protein C Eco28_RS05450 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05450 IPR006697 RecBCD enzyme subunit RecC Eco28_RS05450 IPR041500 RecC, C-terminal Eco28_RS05450 IPR011335 Restriction endonuclease type II-like Eco28_RS05450 IPR013986 DExx box DNA helicase domain superfamily Eco28_RS05455 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like Eco28_RS05455 IPR011765 Peptidase M16, N-terminal Eco28_RS05455 IPR007863 Peptidase M16, C-terminal Eco28_RS05455 IPR001431 Peptidase M16, zinc-binding site Eco28_RS05455 IPR032632 Peptidase M16, middle/third domain Eco28_RS05460 IPR014016 UvrD-like helicase, ATP-binding domain Eco28_RS05460 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type Eco28_RS05460 IPR004586 RecBCD enzyme subunit RecB Eco28_RS05460 IPR014017 UvrD-like DNA helicase, C-terminal Eco28_RS05460 IPR000212 DNA helicase, UvrD/REP type Eco28_RS05460 IPR011604 Exonuclease, phage-type/RecB, C-terminal Eco28_RS05460 IPR011335 Restriction endonuclease type II-like Eco28_RS05460 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05460 IPR034739 UvrD/AddA helicase, N-terminal Eco28_RS05465 IPR003593 AAA+ ATPase domain Eco28_RS05465 IPR006344 RecBCD enzyme subunit RecD Eco28_RS05465 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05465 IPR027785 UvrD-like helicase C-terminal domain Eco28_RS05465 IPR041851 RecBCD enzyme subunit RecD, N-terminal domain Eco28_RS05470 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS05470 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS05470 IPR000182 GNAT domain Eco28_RS05470 IPR010167 Amino-acid N-acetyltransferase Eco28_RS05470 IPR033719 N-acetylglutamate synthase, kinase-like domain Eco28_RS05470 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS05475 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain Eco28_RS05475 IPR021731 AMIN domain Eco28_RS05475 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS05500 IPR005300 Lytic transglycosylase MltA, domain B Eco28_RS05500 IPR036908 RlpA-like domain superfamily Eco28_RS05500 IPR026044 Membrane-bound lytic murein transglycosylase A Eco28_RS05500 IPR034654 MltA, 3D domain Eco28_RS05500 IPR010611 3D domain Eco28_RS05505 IPR035985 Ubiquitin-activating enzyme Eco28_RS05505 IPR000594 THIF-type NAD/FAD binding fold Eco28_RS05510 IPR017763 Cysteine desulfurase, sulphur acceptor subunit CsdE Eco28_RS05510 IPR003808 Fe-S metabolism associated domain, SufE-like Eco28_RS05515 IPR000192 Aminotransferase class V domain Eco28_RS05515 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS05515 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS05515 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS05515 IPR022471 Cysteine desulphurase, catalytic subunit, CsdA Eco28_RS05515 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Eco28_RS05520 IPR010305 Protein of unknown function DUF903 Eco28_RS05520 IPR010920 LSM domain superfamily Eco28_RS05525 IPR000847 Transcription regulator HTH, LysR Eco28_RS05525 IPR005119 LysR, substrate-binding Eco28_RS05525 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS05525 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS05530 IPR006696 Protein of unknown function DUF423 Eco28_RS05535 IPR040739 RlmM ferredoxin-like domain Eco28_RS05535 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS05535 IPR002877 Ribosomal RNA methyltransferase FtsJ domain Eco28_RS05535 IPR011224 Ribosomal RNA large subunit methyltransferase M Eco28_RS05540 IPR014036 DeoR C-terminal sensor domain Eco28_RS05540 IPR001034 DeoR-type HTH domain Eco28_RS05540 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS05540 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS05540 IPR037171 NagB/RpiA transferase-like Eco28_RS05540 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS05545 IPR023750 RbsD-like superfamily Eco28_RS05545 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU Eco28_RS05545 IPR023751 L-fucose mutarotase Eco28_RS05550 IPR018483 Carbohydrate kinase, FGGY, conserved site Eco28_RS05550 IPR000577 Carbohydrate kinase, FGGY Eco28_RS05550 IPR018485 Carbohydrate kinase, FGGY, C-terminal Eco28_RS05550 IPR013450 L-fuculokinase Eco28_RS05550 IPR018484 Carbohydrate kinase, FGGY, N-terminal Eco28_RS05555 IPR012889 L-fucose isomerase, N-terminal-2 Eco28_RS05555 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily Eco28_RS05555 IPR038392 L-fucose isomerase, domain 2 superfamily Eco28_RS05555 IPR005763 L-fucose isomerase Eco28_RS05555 IPR015888 L-fucose isomerase, C-terminal Eco28_RS05555 IPR004216 L-fucose/L-arabinose isomerase, C-terminal Eco28_RS05555 IPR038393 L-fucose isomerase, domain 3 superfamily Eco28_RS05555 IPR038391 L-fucose isomerase, domain 1 superfamily Eco28_RS05555 IPR012888 L-fucose isomerase, N-terminal-1 Eco28_RS05560 IPR011701 Major facilitator superfamily Eco28_RS05560 IPR020846 Major facilitator superfamily domain Eco28_RS05560 IPR036259 MFS transporter superfamily Eco28_RS05560 IPR005275 L-fucose permease FucP Eco28_RS05565 IPR001303 Class II aldolase/adducin N-terminal Eco28_RS05565 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Eco28_RS05565 IPR004782 L-fucose phosphate aldolase Eco28_RS05570 IPR018211 Alcohol dehydrogenase, iron-type, conserved site Eco28_RS05570 IPR039697 Iron-type alcohol dehydrogenase-like Eco28_RS05570 IPR013460 Lactaldehyde reductase Eco28_RS05570 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA Eco28_RS05575 IPR038969 Flap endonuclease Eco28_RS05575 IPR022895 Flap endonuclease Xni Eco28_RS05575 IPR029060 PIN-like domain superfamily Eco28_RS05575 IPR008918 Helix-hairpin-helix motif, class 2 Eco28_RS05575 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal Eco28_RS05575 IPR002421 5'-3' exonuclease, N-terminal Eco28_RS05575 IPR036279 5'-3' exonuclease, C-terminal domain superfamily Eco28_RS05575 IPR020045 DNA polymerase I-like, H3TH domain Eco28_RS05580 IPR029009 Allosteric substrate binding domain superfamily Eco28_RS05580 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form Eco28_RS05580 IPR005130 Serine dehydratase-like, alpha subunit Eco28_RS05580 IPR005131 Serine dehydratase beta chain Eco28_RS05585 IPR004694 Hydroxy amino acid transporter Eco28_RS05590 IPR021826 Domain of unknown function DUF3412 Eco28_RS05590 IPR031100 LOG family Eco28_RS05590 IPR037153 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH-like superfamily Eco28_RS05590 IPR027820 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase YgdH, N-terminal Eco28_RS05595 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal Eco28_RS05595 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF Eco28_RS05595 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 Eco28_RS05600 IPR009948 Syd Eco28_RS05600 IPR038228 Syd superfamily Eco28_RS05605 IPR036814 YqcC-like superfamily Eco28_RS05605 IPR023376 YqcC-like domain Eco28_RS05605 IPR007384 Protein of unknown function UCP006257 Eco28_RS05610 IPR006145 Pseudouridine synthase, RsuA/RluA Eco28_RS05610 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site Eco28_RS05610 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS05615 IPR008254 Flavodoxin/nitric oxide synthase Eco28_RS05615 IPR001094 Flavodoxin-like Eco28_RS05615 IPR029039 Flavoprotein-like superfamily Eco28_RS05620 IPR000849 Sugar phosphate transporter Eco28_RS05620 IPR011701 Major facilitator superfamily Eco28_RS05620 IPR020846 Major facilitator superfamily domain Eco28_RS05620 IPR036259 MFS transporter superfamily Eco28_RS05625 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Eco28_RS05625 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Eco28_RS05625 IPR034593 Mandelate racemase-like Eco28_RS05625 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site Eco28_RS05625 IPR034598 D-Glucarate dehydratase-like Eco28_RS05625 IPR029065 Enolase C-terminal domain-like Eco28_RS05625 IPR029017 Enolase-like, N-terminal Eco28_RS05625 IPR036849 Enolase-like, C-terminal domain superfamily Eco28_RS05630 IPR036849 Enolase-like, C-terminal domain superfamily Eco28_RS05630 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Eco28_RS05630 IPR029065 Enolase C-terminal domain-like Eco28_RS05630 IPR017653 Glucarate dehydratase Eco28_RS05630 IPR034593 Mandelate racemase-like Eco28_RS05630 IPR034598 D-Glucarate dehydratase-like Eco28_RS05630 IPR029017 Enolase-like, N-terminal Eco28_RS05635 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS05635 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Eco28_RS05635 IPR036641 HPT domain superfamily Eco28_RS05635 IPR019247 Histidine kinase BarA, N-terminal Eco28_RS05635 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS05635 IPR005467 Histidine kinase domain Eco28_RS05635 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS05635 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS05635 IPR003660 HAMP domain Eco28_RS05635 IPR011006 CheY-like superfamily Eco28_RS05635 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS05635 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS05640 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS05640 IPR002792 TRAM domain Eco28_RS05640 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS05640 IPR030391 RNA methyltransferase TrmA, conserved site Eco28_RS05640 IPR010280 (Uracil-5)-methyltransferase family Eco28_RS05640 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD Eco28_RS05640 IPR030390 RNA methyltransferase TrmA, active site Eco28_RS05645 IPR012676 TGS-like Eco28_RS05645 IPR002912 ACT domain Eco28_RS05645 IPR012675 Beta-grasp domain superfamily Eco28_RS05645 IPR033655 RelA, TGS domain Eco28_RS05645 IPR003607 HD/PDEase domain Eco28_RS05645 IPR004811 RelA/SpoT family Eco28_RS05645 IPR007685 RelA/SpoT Eco28_RS05645 IPR004095 TGS Eco28_RS05650 IPR037914 SpoVT-AbrB domain superfamily Eco28_RS05650 IPR039052 Antitoxin PemI-like Eco28_RS05650 IPR007159 SpoVT-AbrB domain Eco28_RS05655 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor Eco28_RS05655 IPR003477 mRNA interferase PemK-like Eco28_RS05660 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Eco28_RS05660 IPR011551 NTP pyrophosphohydrolase MazG Eco28_RS05665 IPR004468 CTP synthase Eco28_RS05665 IPR029062 Class I glutamine amidotransferase-like Eco28_RS05665 IPR017456 CTP synthase, N-terminal Eco28_RS05665 IPR017926 Glutamine amidotransferase Eco28_RS05665 IPR033828 CTP synthase GATase domain Eco28_RS05665 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05670 IPR020811 Enolase, N-terminal Eco28_RS05670 IPR020810 Enolase, C-terminal TIM barrel domain Eco28_RS05670 IPR020809 Enolase, conserved site Eco28_RS05670 IPR029017 Enolase-like, N-terminal Eco28_RS05670 IPR000941 Enolase Eco28_RS05670 IPR036849 Enolase-like, C-terminal domain superfamily Eco28_RS05675 IPR007621 TPM domain Eco28_RS05685 IPR007621 TPM domain Eco28_RS05695 IPR024924 7-carboxy-7-deazaguanine synthase-like Eco28_RS05695 IPR013785 Aldolase-type TIM barrel Eco28_RS05695 IPR027609 Putative 7-carboxy-7-deazaguanine synthase QueE, Proteobacteria Eco28_RS05695 IPR007197 Radical SAM Eco28_RS05700 IPR018484 Carbohydrate kinase, FGGY, N-terminal Eco28_RS05700 IPR000577 Carbohydrate kinase, FGGY Eco28_RS05700 IPR018485 Carbohydrate kinase, FGGY, C-terminal Eco28_RS05705 IPR011701 Major facilitator superfamily Eco28_RS05705 IPR020846 Major facilitator superfamily domain Eco28_RS05705 IPR036259 MFS transporter superfamily Eco28_RS05710 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS05710 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS05710 IPR036291 NAD(P)-binding domain superfamily Eco28_RS05715 IPR006094 FAD linked oxidase, N-terminal Eco28_RS05715 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS05715 IPR016164 FAD-linked oxidase-like, C-terminal Eco28_RS05715 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS05715 IPR016167 FAD-binding, type PCMH, subdomain 1 Eco28_RS05715 IPR016166 FAD-binding domain, PCMH-type Eco28_RS05715 IPR004113 FAD-linked oxidase, C-terminal Eco28_RS05720 IPR005829 Sugar transporter, conserved site Eco28_RS05720 IPR036259 MFS transporter superfamily Eco28_RS05720 IPR005828 Major facilitator, sugar transporter-like Eco28_RS05720 IPR020846 Major facilitator superfamily domain Eco28_RS05725 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Eco28_RS05725 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal Eco28_RS05725 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS05725 IPR012255 Electron transfer flavoprotein, beta subunit Eco28_RS05730 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Eco28_RS05730 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS05730 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS05730 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Eco28_RS05730 IPR001308 Electron transfer flavoprotein alpha subunit/FixB Eco28_RS05735 IPR035928 GlpP-like superfamily Eco28_RS05735 IPR006699 Glycerol uptake operon antiterminator Eco28_RS05740 IPR012206 Ferredoxin-like, FixX Eco28_RS05740 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS05745 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS05745 IPR039651 Protein FixC-like Eco28_RS05745 IPR006076 FAD dependent oxidoreductase Eco28_RS05750 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Eco28_RS05750 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Eco28_RS05755 IPR001433 Oxidoreductase FAD/NAD(P)-binding Eco28_RS05755 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase Eco28_RS05755 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain Eco28_RS05755 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding Eco28_RS05755 IPR029758 Sulphite reductase [NADPH] flavoprotein, alpha chain, Proteobacteria Eco28_RS05755 IPR017927 FAD-binding domain, ferredoxin reductase-type Eco28_RS05755 IPR001094 Flavodoxin-like Eco28_RS05755 IPR017938 Riboflavin synthase-like beta-barrel Eco28_RS05755 IPR029039 Flavoprotein-like superfamily Eco28_RS05755 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Eco28_RS05755 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily Eco28_RS05755 IPR008254 Flavodoxin/nitric oxide synthase Eco28_RS05760 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site Eco28_RS05760 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily Eco28_RS05760 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain Eco28_RS05760 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit Eco28_RS05760 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain Eco28_RS05765 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase Eco28_RS05765 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS05765 IPR002500 Phosphoadenosine phosphosulphate reductase Eco28_RS05765 IPR011800 Phosphoadenosine phosphosulphate reductase CysH Eco28_RS05775 IPR000021 Hok/gef cell toxic protein Eco28_RS05780 IPR006483 CRISPR-associated Cas3-type HD domain Eco28_RS05780 IPR011545 DEAD/DEAH box helicase domain Eco28_RS05780 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS05780 IPR001650 Helicase, C-terminal Eco28_RS05780 IPR006474 Helicase Cas3, CRISPR-associated, core Eco28_RS05780 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05780 IPR035011 CRISPR-associated endonuclease/helicase Cas3 Eco28_RS05780 IPR038257 CRISPR-associated Cas3-type HD domain superfamily Eco28_RS05800 IPR010148 CRISPR-associated protein, CT1975 Eco28_RS05805 IPR010147 CRISPR-associated protein, CasD Eco28_RS05805 IPR013422 CRISPR-associated protein Cas5, N-terminal Eco28_RS05805 IPR021124 CRISPR-associated protein, Cas5 Eco28_RS05815 IPR002729 CRISPR-associated protein Cas1 Eco28_RS05815 IPR042206 CRISPR-associated endonuclease Cas1, C-terminal domain Eco28_RS05815 IPR019851 CRISPR-associated protein Cas1, ECOLI subtype Eco28_RS05815 IPR042211 CRISPR-associated endonuclease Cas1, N-terminal domain Eco28_RS05815 IPR033641 CRISPR-associated protein Cas1, type I-E Eco28_RS05820 IPR010152 CRISPR-associated protein Cas2 subtype Eco28_RS05825 IPR007484 Peptidase M28 Eco28_RS05830 IPR011784 Sulphate adenylyltransferase, small subunit Eco28_RS05830 IPR002500 Phosphoadenosine phosphosulphate reductase Eco28_RS05830 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS05835 IPR005225 Small GTP-binding protein domain Eco28_RS05835 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05835 IPR031157 Tr-type G domain, conserved site Eco28_RS05835 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Eco28_RS05835 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS05835 IPR041757 Sulfate adenylyltransferase subunit CysN, GTP-binding domain Eco28_RS05835 IPR000795 Transcription factor, GTP-binding domain Eco28_RS05835 IPR011779 Sulphate adenylyltransferase, large subunit Eco28_RS05840 IPR002891 Adenylyl-sulfate kinase Eco28_RS05840 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05845 IPR022721 Protein of unknown function DUF3561 Eco28_RS05850 IPR023081 Cell division protein FtsB Eco28_RS05850 IPR007060 Septum formation initiator FtsL/DivIC Eco28_RS05855 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS05855 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site Eco28_RS05855 IPR034683 Cytidylyltransferase IspD/TarI Eco28_RS05855 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Eco28_RS05860 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily Eco28_RS05860 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site Eco28_RS05860 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Eco28_RS05865 IPR001656 Pseudouridine synthase, TruD Eco28_RS05865 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS05865 IPR020119 Pseudouridine synthase TruD, conserved site Eco28_RS05865 IPR011760 Pseudouridine synthase, TruD, insertion domain Eco28_RS05865 IPR042214 Pseudouridine synthase, TruD, catalytic domain Eco28_RS05870 IPR030048 Survival protein SurE Eco28_RS05870 IPR036523 SurE-like phosphatase/nucleotidase superfamily Eco28_RS05870 IPR002828 Survival protein SurE-like phosphatase/nucleotidase Eco28_RS05875 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS05875 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase Eco28_RS05880 IPR011055 Duplicated hybrid motif Eco28_RS05880 IPR018392 LysM domain Eco28_RS05880 IPR036779 LysM domain superfamily Eco28_RS05880 IPR016047 Peptidase M23 Eco28_RS05885 IPR012761 RNA polymerase sigma factor RpoS Eco28_RS05885 IPR000943 RNA polymerase sigma-70 Eco28_RS05885 IPR013324 RNA polymerase sigma factor, region 3/4-like Eco28_RS05885 IPR009042 RNA polymerase sigma-70 region 1.2 Eco28_RS05885 IPR014284 RNA polymerase sigma-70 like domain Eco28_RS05885 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS05885 IPR013325 RNA polymerase sigma factor, region 2 Eco28_RS05885 IPR007624 RNA polymerase sigma-70 region 3 Eco28_RS05885 IPR007630 RNA polymerase sigma-70 region 4 Eco28_RS05885 IPR007627 RNA polymerase sigma-70 region 2 Eco28_RS05890 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS05890 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS05890 IPR023187 Transcriptional regulator MarR-type, conserved site Eco28_RS05890 IPR000835 MarR-type HTH domain Eco28_RS05895 IPR036551 Flavin prenyltransferase-like Eco28_RS05895 IPR003382 Flavoprotein Eco28_RS05895 IPR032901 Probable UbiX-like flavin prenyltransferase Eco28_RS05895 IPR004507 Flavin prenyltransferase UbiX-like Eco28_RS05900 IPR032902 Phenolic acid decarboxylase subunit C Eco28_RS05900 IPR002830 UbiD decarboxylyase family Eco28_RS05910 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Eco28_RS05910 IPR029052 Metallo-dependent phosphatase-like Eco28_RS05910 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase Eco28_RS05915 IPR007860 DNA mismatch repair protein MutS, connector domain Eco28_RS05915 IPR036187 DNA mismatch repair protein MutS, core domain superfamily Eco28_RS05915 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05915 IPR005748 DNA mismatch repair protein MutS Eco28_RS05915 IPR016151 DNA mismatch repair protein MutS, N-terminal Eco28_RS05915 IPR007696 DNA mismatch repair protein MutS, core Eco28_RS05915 IPR007861 DNA mismatch repair protein MutS, clamp Eco28_RS05915 IPR000432 DNA mismatch repair protein MutS, C-terminal Eco28_RS05915 IPR036678 MutS, connector domain superfamily Eco28_RS05915 IPR017261 DNA mismatch repair protein MutS/MSH Eco28_RS05915 IPR007695 DNA mismatch repair protein MutS-like, N-terminal Eco28_RS05925 IPR020483 Uncharacterised protein family YgbA Eco28_RS05930 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS05930 IPR002197 DNA binding HTH domain, Fis-type Eco28_RS05930 IPR003018 GAF domain Eco28_RS05930 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05930 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS05930 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS05930 IPR003593 AAA+ ATPase domain Eco28_RS05930 IPR009057 Homeobox-like domain superfamily Eco28_RS05930 IPR029016 GAF-like domain superfamily Eco28_RS05935 IPR010918 PurM-like, C-terminal domain Eco28_RS05935 IPR016188 PurM-like, N-terminal domain Eco28_RS05935 IPR036921 PurM-like, N-terminal domain superfamily Eco28_RS05935 IPR011854 Carbamoyl dehydratase HypE Eco28_RS05935 IPR036676 PurM-like, C-terminal domain superfamily Eco28_RS05940 IPR042243 HypD, domain 2 Eco28_RS05940 IPR042244 HypD, domain 1 Eco28_RS05940 IPR002780 Hydrogenase formation HypD protein Eco28_RS05945 IPR019812 Hydrogenase assembly chaperone, conserved site Eco28_RS05945 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Eco28_RS05945 IPR037254 HupF/HypC superfamily Eco28_RS05950 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Eco28_RS05950 IPR004392 Hydrogenase maturation factor HypB Eco28_RS05950 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS05955 IPR020538 Hydrogenase nickel incorporation protein HypA/HybF, conserved site Eco28_RS05955 IPR000688 Hydrogenase maturation factor HypA/HybF Eco28_RS05960 IPR021285 Transcription regulator, HycA Eco28_RS05970 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS05970 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS05975 IPR003918 NADH:ubiquinone oxidoreductase Eco28_RS05975 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Eco28_RS05980 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site Eco28_RS05980 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H Eco28_RS05985 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Eco28_RS05985 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit Eco28_RS05985 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Eco28_RS05985 IPR001135 NADH-quinone oxidoreductase, subunit D Eco28_RS05985 IPR029014 [NiFe]-hydrogenase, large subunit Eco28_RS05985 IPR001501 Nickel-dependent hydrogenase, large subunit Eco28_RS05985 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Eco28_RS05990 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS05990 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS05990 IPR010226 NADH-quinone oxidoreductase, chain I Eco28_RS05995 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit Eco28_RS05995 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Eco28_RS06000 IPR010005 Formate hydrogenlyase maturation HycH Eco28_RS06005 IPR023430 Peptidase HybD-like domain superfamily Eco28_RS06005 IPR004420 Peptidase A31, hydrogenase maturation protease HycI Eco28_RS06005 IPR000671 Peptidase A31 family Eco28_RS06010 IPR039060 Antitoxin HigA Eco28_RS06010 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS06010 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS06015 IPR001360 Glycoside hydrolase family 1 Eco28_RS06015 IPR017853 Glycoside hydrolase superfamily Eco28_RS06015 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site Eco28_RS06015 IPR018120 Glycoside hydrolase family 1, active site Eco28_RS06020 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Eco28_RS06020 IPR003352 Phosphotransferase system, EIIC Eco28_RS06020 IPR013013 Phosphotransferase system, EIIC component, type 1 Eco28_RS06020 IPR001996 Phosphotransferase system, IIB component, type 1 Eco28_RS06020 IPR036878 Glucose permease domain IIB Eco28_RS06020 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Eco28_RS06025 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS06025 IPR028082 Periplasmic binding protein-like I Eco28_RS06025 IPR000843 LacI-type HTH domain Eco28_RS06030 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS06030 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS06035 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Eco28_RS06035 IPR001792 Acylphosphatase-like domain Eco28_RS06035 IPR017968 Acylphosphatase, conserved site Eco28_RS06035 IPR004421 Carbamoyltransferase, HypF-type Eco28_RS06035 IPR011125 Zinc finger, HypF-type Eco28_RS06035 IPR006070 YrdC-like domain Eco28_RS06035 IPR041440 HypF, Kae1-like domain Eco28_RS06035 IPR036046 Acylphosphatase-like domain superfamily Eco28_RS06040 IPR041364 Rubredoxin binding domain Eco28_RS06040 IPR023961 Nitric oxide reductase FlRd-NAD(+) reductase Eco28_RS06040 IPR023753 FAD/NAD(P)-binding domain Eco28_RS06040 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS06045 IPR008254 Flavodoxin/nitric oxide synthase Eco28_RS06045 IPR024935 Rubredoxin domain Eco28_RS06045 IPR016440 Rubredoxin-oxygen oxidoreductase Eco28_RS06045 IPR024934 Rubredoxin-like domain Eco28_RS06045 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Eco28_RS06045 IPR001279 Metallo-beta-lactamase Eco28_RS06045 IPR029039 Flavoprotein-like superfamily Eco28_RS06045 IPR023957 Anaerobic nitric oxide reductase flavorubredoxin Eco28_RS06050 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS06050 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS06050 IPR003593 AAA+ ATPase domain Eco28_RS06050 IPR003018 GAF domain Eco28_RS06050 IPR029016 GAF-like domain superfamily Eco28_RS06050 IPR009057 Homeobox-like domain superfamily Eco28_RS06050 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS06050 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS06050 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS06050 IPR023944 Anaerobic nitric oxide reductase transcription regulator Eco28_RS06055 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type Eco28_RS06055 IPR035474 KpsF-like, SIS domain Eco28_RS06055 IPR001347 Sugar isomerase (SIS) Eco28_RS06055 IPR000644 CBS domain Eco28_RS06060 IPR014036 DeoR C-terminal sensor domain Eco28_RS06060 IPR001034 DeoR-type HTH domain Eco28_RS06060 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS06060 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS06060 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS06060 IPR037171 NagB/RpiA transferase-like Eco28_RS06065 IPR009693 Glucitol operon activator Eco28_RS06070 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS06070 IPR036291 NAD(P)-binding domain superfamily Eco28_RS06070 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS06075 IPR018454 Phosphotransferase system, glucitol/sorbitol-specific IIA component, subgroup Eco28_RS06075 IPR004716 Phosphotransferase system, glucitol/sorbitol-specific IIA component Eco28_RS06075 IPR036665 Phosphotransferase system, glucitol/sorbitol-specific IIA component superfamily Eco28_RS06080 IPR004702 Phosphotransferease, sorbitol phosphotransferase enzyme II Eco28_RS06080 IPR011618 Sorbitol phosphotransferase enzyme II, N-terminal Eco28_RS06080 IPR011638 Sorbitol phosphotransferase enzyme II, C-terminal Eco28_RS06085 IPR004699 Phosphotransferase system, enzyme II sorbitol-specific factor Eco28_RS06090 IPR023346 Lysozyme-like domain superfamily Eco28_RS06090 IPR011757 Lytic transglycosylase MltB Eco28_RS06090 IPR031304 Transglycosylase SLT domain 2 Eco28_RS06095 IPR036653 CinA-like, C-terminal Eco28_RS06095 IPR008136 CinA, C-terminal Eco28_RS06100 IPR023400 DNA recombination and repair protein RecA, C-terminal Eco28_RS06100 IPR013765 DNA recombination and repair protein RecA Eco28_RS06100 IPR020584 DNA recombination/repair protein RecA, conserved site Eco28_RS06100 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS06100 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain Eco28_RS06100 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface Eco28_RS06100 IPR003593 AAA+ ATPase domain Eco28_RS06105 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS06105 IPR003783 Regulatory protein RecX Eco28_RS06110 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria Eco28_RS06110 IPR003156 DHHA1 domain Eco28_RS06110 IPR002318 Alanine-tRNA ligase, class IIc Eco28_RS06110 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily Eco28_RS06110 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain Eco28_RS06110 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS06110 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal Eco28_RS06110 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily Eco28_RS06110 IPR012947 Threonyl/alanyl tRNA synthetase, SAD Eco28_RS06115 IPR036107 Carbon storage regulator superfamily Eco28_RS06115 IPR003751 Translational regulator CsrA Eco28_RS06140 IPR010976 Beta-phosphoglucomutase hydrolase Eco28_RS06140 IPR006439 HAD hydrolase, subfamily IA Eco28_RS06140 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Eco28_RS06140 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS06140 IPR036412 HAD-like superfamily Eco28_RS06140 IPR023214 HAD superfamily Eco28_RS06145 IPR032816 SNARE associated Golgi protein Eco28_RS06150 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Eco28_RS06150 IPR007370 Glutamate--cysteine ligase Eco28_RS06150 IPR006334 Glutamate--cysteine ligase, monofunctional Eco28_RS06155 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like Eco28_RS06155 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily Eco28_RS06155 IPR003815 S-ribosylhomocysteinase (LuxS) Eco28_RS06160 IPR020846 Major facilitator superfamily domain Eco28_RS06160 IPR036259 MFS transporter superfamily Eco28_RS06160 IPR004638 Drug resistance transporter EmrB-like Eco28_RS06160 IPR011701 Major facilitator superfamily Eco28_RS06165 IPR005694 Efflux pump membrane protein Eco28_RS06165 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS06170 IPR000835 MarR-type HTH domain Eco28_RS06170 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS06170 IPR023187 Transcriptional regulator MarR-type, conserved site Eco28_RS06170 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS06175 IPR008407 Branched-chain amino acid transport, AzlD Eco28_RS06180 IPR011606 Branched-chain amino acid transport, permease Eco28_RS06185 IPR036259 MFS transporter superfamily Eco28_RS06185 IPR020846 Major facilitator superfamily domain Eco28_RS06185 IPR011701 Major facilitator superfamily Eco28_RS06190 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain Eco28_RS06195 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS06195 IPR035906 MetI-like superfamily Eco28_RS06200 IPR003439 ABC transporter-like Eco28_RS06200 IPR003593 AAA+ ATPase domain Eco28_RS06200 IPR000644 CBS domain Eco28_RS06200 IPR005892 Glycine betaine transport ATP-binding subunit Eco28_RS06200 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS06200 IPR017871 ABC transporter, conserved site Eco28_RS06210 IPR030475 Ribonucleotide reductase small subunit, acitve site Eco28_RS06210 IPR026494 Ribonucleoside reductase subunit beta, NrdF Eco28_RS06210 IPR009078 Ferritin-like superfamily Eco28_RS06210 IPR012348 Ribonucleotide reductase-like Eco28_RS06210 IPR033909 Ribonucleotide reductase small subunit Eco28_RS06210 IPR000358 Ribonucleotide reductase small subunit family Eco28_RS06215 IPR000788 Ribonucleotide reductase large subunit, C-terminal Eco28_RS06215 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE Eco28_RS06215 IPR013509 Ribonucleotide reductase large subunit, N-terminal Eco28_RS06215 IPR013554 Ribonucleotide reductase N-terminal Eco28_RS06215 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal Eco28_RS06215 IPR013346 Ribonucleotide reductase, class I , alpha subunit Eco28_RS06215 IPR039718 Ribonucleoside-diphosphate reductase large subunit Eco28_RS06220 IPR029039 Flavoprotein-like superfamily Eco28_RS06220 IPR004465 Ribonucleotide reductase Class Ib, NrdI Eco28_RS06220 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial Eco28_RS06225 IPR002109 Glutaredoxin Eco28_RS06225 IPR036249 Thioredoxin-like superfamily Eco28_RS06225 IPR011909 Glutaredoxin-like protein NrdH Eco28_RS06235 IPR029032 AhpD-like Eco28_RS06235 IPR004675 Alkylhydroperoxidase AhpD core Eco28_RS06235 IPR003779 Carboxymuconolactone decarboxylase-like Eco28_RS06240 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS06240 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS06240 IPR004839 Aminotransferase, class I/classII Eco28_RS06240 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS06240 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS06240 IPR000524 Transcription regulator HTH, GntR Eco28_RS06245 IPR010279 Inner membrane protein YqjD/ElaB Eco28_RS06250 IPR018994 Protein of unknown function DUF2002 Eco28_RS06255 IPR010574 L-alanine exporter AlaE Eco28_RS06260 IPR027454 Histone-like protein H-NS, N-terminal Eco28_RS06260 IPR001801 Histone-like protein H-NS Eco28_RS06260 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily Eco28_RS06260 IPR027444 Histone-like protein H-NS, C-terminal domain Eco28_RS06265 IPR001763 Rhodanese-like domain Eco28_RS06265 IPR036873 Rhodanese-like domain superfamily Eco28_RS06265 IPR021309 Protein of unknown function DUF2892 Eco28_RS06270 IPR011991 ArsR-like helix-turn-helix domain Eco28_RS06270 IPR001845 HTH ArsR-type DNA-binding domain Eco28_RS06270 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS06270 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS06275 IPR000612 Proteolipid membrane potential modulator Eco28_RS06280 IPR014004 Transport-associated and nodulation domain, bacteria Eco28_RS06280 IPR007055 BON domain Eco28_RS06280 IPR018392 LysM domain Eco28_RS06280 IPR036779 LysM domain superfamily Eco28_RS06285 IPR011711 GntR, C-terminal Eco28_RS06285 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS06285 IPR000524 Transcription regulator HTH, GntR Eco28_RS06285 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS06285 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS06290 IPR004841 Amino acid permease/ SLC12A domain Eco28_RS06290 IPR004840 Amino acid permease, conserved site Eco28_RS06290 IPR011265 GABA permease Eco28_RS06295 IPR005814 Aminotransferase class-III Eco28_RS06295 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS06295 IPR004632 4-aminobutyrate aminotransferase, bacterial Eco28_RS06295 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS06295 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS06300 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS06300 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS06300 IPR015590 Aldehyde dehydrogenase domain Eco28_RS06300 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Eco28_RS06300 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS06300 IPR010102 Succinate semialdehyde dehydrogenase Eco28_RS06300 IPR016160 Aldehyde dehydrogenase, cysteine active site Eco28_RS06305 IPR006076 FAD dependent oxidoreductase Eco28_RS06305 IPR030862 L-2-hydroxyglutarate dehydrogenase Eco28_RS06305 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS06310 IPR015038 Glutarate 2-hydroxylase GlaH Eco28_RS06310 IPR042098 Taurine dioxygenase TauD-like superfamily Eco28_RS06315 IPR013780 Glycosyl hydrolase, all-beta Eco28_RS06315 IPR017853 Glycoside hydrolase superfamily Eco28_RS06315 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Eco28_RS06330 IPR035124 Protein of unknown function DUF5508 Eco28_RS06335 IPR006119 Resolvase, N-terminal catalytic domain Eco28_RS06350 IPR004899 Pertactin, central region Eco28_RS06350 IPR005546 Autotransporter beta-domain Eco28_RS06350 IPR036709 Autotransporter beta-domain superfamily Eco28_RS06350 IPR006315 Outer membrane autotransporter barrel Eco28_RS06350 IPR012332 P22 tailspike-like, C-terminal domain superfamily Eco28_RS06350 IPR011050 Pectin lyase fold/virulence factor Eco28_RS06350 IPR003991 Pertactin virulence factor family Eco28_RS06350 IPR030930 Adhesin of bacterial autotransporter system Eco28_RS06370 IPR035317 Protein of unknown function DUF5375 Eco28_RS06430 IPR025166 Integrase, DNA-binding domain Eco28_RS06430 IPR038488 Integrase, DNA-binding domain superfamily Eco28_RS06430 IPR002104 Integrase, catalytic domain Eco28_RS06430 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS06430 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS06430 IPR010998 Integrase/recombinase, N-terminal Eco28_RS06440 IPR000037 SsrA-binding protein Eco28_RS06440 IPR020081 SsrA-binding protein, conserved site Eco28_RS06440 IPR023620 Small protein B Eco28_RS06445 IPR005031 Coenzyme Q-binding protein COQ10, START domain Eco28_RS06445 IPR023393 START-like domain superfamily Eco28_RS06450 IPR037021 RnfH superfamily Eco28_RS06450 IPR005346 RnfH protein Eco28_RS06450 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Eco28_RS06455 IPR037873 BamE-like Eco28_RS06455 IPR007450 Lipoprotein SmpA/OmlA Eco28_RS06455 IPR026592 Outer membrane protein assembly factor BamE Eco28_RS06460 IPR004604 DNA recombination/repair protein RecN Eco28_RS06460 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS06460 IPR003395 RecF/RecN/SMC, N-terminal Eco28_RS06465 IPR002504 NAD kinase Eco28_RS06465 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Eco28_RS06465 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal Eco28_RS06465 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal Eco28_RS06475 IPR013805 GrpE nucleotide exchange factor, coiled-coil Eco28_RS06475 IPR009012 GrpE nucleotide exchange factor, head Eco28_RS06475 IPR000740 GrpE nucleotide exchange factor Eco28_RS06480 IPR002550 CNNM, transmembrane domain Eco28_RS06480 IPR000644 CBS domain Eco28_RS06480 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS06480 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS06480 IPR005170 Transporter-associated domain Eco28_RS06485 IPR002541 Cytochrome c assembly protein Eco28_RS06490 IPR003593 AAA+ ATPase domain Eco28_RS06490 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS06490 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily Eco28_RS06490 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily Eco28_RS06490 IPR004780 Signal recognition particle protein Eco28_RS06490 IPR004125 Signal recognition particle, SRP54 subunit, M-domain Eco28_RS06490 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain Eco28_RS06490 IPR022941 Signal recognition particle, SRP54 subunit Eco28_RS06490 IPR013822 Signal recognition particle SRP54, helical bundle Eco28_RS06495 IPR000307 Ribosomal protein S16 Eco28_RS06495 IPR023803 Ribosomal protein S16 domain superfamily Eco28_RS06495 IPR020592 Ribosomal protein S16, conserved site Eco28_RS06500 IPR011033 PRC-barrel-like superfamily Eco28_RS06500 IPR002676 RimM, N-terminal Eco28_RS06500 IPR027275 PRC-barrel domain Eco28_RS06500 IPR036976 RimM, N-terminal domain superfamily Eco28_RS06500 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS06500 IPR011961 16S rRNA processing protein RimM Eco28_RS06505 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria Eco28_RS06505 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain Eco28_RS06505 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal Eco28_RS06505 IPR029028 Alpha/beta knot methyltransferases Eco28_RS06505 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Eco28_RS06510 IPR008991 Translation protein SH3-like domain superfamily Eco28_RS06510 IPR038657 Ribosomal protein L19 superfamily Eco28_RS06510 IPR001857 Ribosomal protein L19 Eco28_RS06510 IPR018257 Ribosomal protein L19, conserved site Eco28_RS06515 IPR006664 Outer membrane protein, bacterial Eco28_RS06515 IPR006665 OmpA-like domain Eco28_RS06515 IPR036737 OmpA-like domain superfamily Eco28_RS06520 IPR003660 HAMP domain Eco28_RS06520 IPR029787 Nucleotide cyclase Eco28_RS06520 IPR000160 GGDEF domain Eco28_RS06520 IPR033417 Periplasmic sensor domain CHASE8 Eco28_RS06525 IPR025293 YfiR/HmsC-like Eco28_RS06530 IPR021242 Protein of unknown function DUF2799 Eco28_RS06535 IPR006218 DAHP synthetase I/KDSA Eco28_RS06535 IPR006219 DHAP synthase, class 1 Eco28_RS06535 IPR013785 Aldolase-type TIM barrel Eco28_RS06540 IPR003099 Prephenate dehydrogenase Eco28_RS06540 IPR036291 NAD(P)-binding domain superfamily Eco28_RS06540 IPR002701 Chorismate mutase II, prokaryotic-type Eco28_RS06540 IPR036979 Chorismate mutase domain superfamily Eco28_RS06540 IPR011277 Chorismate mutase, T-protein Eco28_RS06540 IPR008244 Bifunctional chorismate mutase/prephenate dehydrogenase T-protein Eco28_RS06540 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS06540 IPR036263 Chorismate mutase type II superfamily Eco28_RS06545 IPR018528 Prephenate dehydratase, conserved site Eco28_RS06545 IPR036263 Chorismate mutase type II superfamily Eco28_RS06545 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase Eco28_RS06545 IPR002912 ACT domain Eco28_RS06545 IPR002701 Chorismate mutase II, prokaryotic-type Eco28_RS06545 IPR001086 Prephenate dehydratase Eco28_RS06545 IPR010952 Chorismate mutase, gammaproteobacteria Eco28_RS06545 IPR036979 Chorismate mutase domain superfamily Eco28_RS06550 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS06550 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS06550 IPR023009 Tyrosine recombinase XerC/XerD Eco28_RS06550 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS06550 IPR010998 Integrase/recombinase, N-terminal Eco28_RS06550 IPR002104 Integrase, catalytic domain Eco28_RS06555 IPR035569 Antitoxin epsilon/PezA domain superfamily Eco28_RS06555 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS06555 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS06605 IPR008766 Replication gene A protein Eco28_RS06610 IPR042051 ParM-like Eco28_RS06610 IPR009440 Plasmid segregation protein ParM/StbA Eco28_RS06635 IPR030935 Phage portal protein PBSX family, Proteobacteria Eco28_RS06635 IPR006430 Phage portal protein PBSX family Eco28_RS06720 IPR011083 Phage tail collar domain Eco28_RS06720 IPR037053 Phage tail collar domain superfamily Eco28_RS06725 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS06730 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS06740 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily Eco28_RS06740 IPR006120 Resolvase, HTH domain Eco28_RS06740 IPR006118 Recombinase, conserved site Eco28_RS06740 IPR009057 Homeobox-like domain superfamily Eco28_RS06740 IPR006119 Resolvase, N-terminal catalytic domain Eco28_RS06770 IPR035089 Tail sheath protein, subtilisin-like domain Eco28_RS06770 IPR020287 Tail sheath protein, C-terminal domain Eco28_RS06795 IPR007829 TM2 domain Eco28_RS06805 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS06805 IPR001091 Restriction/modification DNA-methylase Eco28_RS06805 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS06805 IPR002941 DNA methylase N-4/N-6 Eco28_RS06810 IPR036567 Ribosome hibernation promotion factor-like Eco28_RS06810 IPR003489 Ribosome hibernation promoting factor/RaiA Eco28_RS06820 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS06820 IPR039565 Outer membrane lipoprotein BamD-like Eco28_RS06820 IPR017689 Outer membrane protein assembly factor BamD Eco28_RS06825 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS06825 IPR002942 RNA-binding S4 domain Eco28_RS06825 IPR036986 RNA-binding S4 domain superfamily Eco28_RS06825 IPR006225 Pseudouridine synthase, RluC/RluD Eco28_RS06825 IPR006145 Pseudouridine synthase, RsuA/RluA Eco28_RS06825 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site Eco28_RS06830 IPR011324 Cytotoxic necrotizing factor-like, catalytic Eco28_RS06830 IPR038371 Multi-copper polyphenol oxidoreductase superfamily Eco28_RS06830 IPR003730 Multi-copper polyphenol oxidoreductase Eco28_RS06835 IPR028299 ClpA/B, conserved site 2 Eco28_RS06835 IPR001270 ClpA/B family Eco28_RS06835 IPR004176 Clp, N-terminal Eco28_RS06835 IPR036628 Clp, N-terminal domain superfamily Eco28_RS06835 IPR019489 Clp ATPase, C-terminal Eco28_RS06835 IPR017730 Chaperonin ClpB Eco28_RS06835 IPR003959 ATPase, AAA-type, core Eco28_RS06835 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS06835 IPR018368 ClpA/B, conserved site 1 Eco28_RS06835 IPR003593 AAA+ ATPase domain Eco28_RS06835 IPR041546 ClpA/ClpB, AAA lid domain Eco28_RS06865 IPR005828 Major facilitator, sugar transporter-like Eco28_RS06865 IPR005829 Sugar transporter, conserved site Eco28_RS06865 IPR004736 MFS transporter, metabolite:H symporter Eco28_RS06865 IPR020846 Major facilitator superfamily domain Eco28_RS06865 IPR036259 MFS transporter superfamily Eco28_RS06870 IPR017028 Uncharacterised conserved protein UCP034456 Eco28_RS06870 IPR018736 Protein of unknown function DUF2279, periplasmic lipoprotein Eco28_RS06875 IPR001736 Phospholipase D/Transphosphatidylase Eco28_RS06875 IPR025202 Phospholipase D-like domain Eco28_RS06875 IPR016270 CDP-alcohol phosphatidyltransferase class-II family Eco28_RS06880 IPR036291 NAD(P)-binding domain superfamily Eco28_RS06880 IPR016102 Succinyl-CoA synthetase-like Eco28_RS06880 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Eco28_RS06880 IPR000182 GNAT domain Eco28_RS06880 IPR003781 CoA-binding Eco28_RS06880 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS06880 IPR011761 ATP-grasp fold Eco28_RS06880 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS06885 IPR039262 DTW domain-containing protein 2 Eco28_RS06885 IPR005636 DTW Eco28_RS06890 IPR036249 Thioredoxin-like superfamily Eco28_RS06890 IPR005746 Thioredoxin Eco28_RS06890 IPR017937 Thioredoxin, conserved site Eco28_RS06890 IPR013766 Thioredoxin domain Eco28_RS06900 IPR004441 RNA methyltransferase TrmH family Eco28_RS06900 IPR001537 tRNA/rRNA methyltransferase, SpoU type Eco28_RS06900 IPR013123 RNA 2-O ribose methyltransferase, substrate binding Eco28_RS06900 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Eco28_RS06900 IPR029028 Alpha/beta knot methyltransferases Eco28_RS06900 IPR029064 50S ribosomal protein L30e-like Eco28_RS06900 IPR016479 tRNA/rRNA methyltransferase, YfiF, predicted Eco28_RS06905 IPR002043 Uracil-DNA glycosylase family 1 Eco28_RS06905 IPR018085 Uracil-DNA glycosylase, active site Eco28_RS06905 IPR005122 Uracil-DNA glycosylase-like Eco28_RS06905 IPR036895 Uracil-DNA glycosylase-like domain superfamily Eco28_RS06910 IPR001150 Glycine radical domain Eco28_RS06910 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Eco28_RS06910 IPR011140 Autonomous glycyl radical cofactor GrcA Eco28_RS06915 IPR001123 Amino acid exporter protein, LeuE-type Eco28_RS06920 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS06920 IPR000847 Transcription regulator HTH, LysR Eco28_RS06920 IPR005119 LysR, substrate-binding Eco28_RS06920 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS06925 IPR028621 ATP-dependent RNA helicase SrmB Eco28_RS06925 IPR001650 Helicase, C-terminal Eco28_RS06925 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS06925 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Eco28_RS06925 IPR014014 RNA helicase, DEAD-box type, Q motif Eco28_RS06925 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS06925 IPR011545 DEAD/DEAH box helicase domain Eco28_RS06930 IPR007848 Methyltransferase small domain Eco28_RS06930 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS06930 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS06930 IPR022882 tRNA1(Val) (adenine(37)-N6)-methyltransferase Eco28_RS06935 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Eco28_RS06935 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Eco28_RS06935 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Eco28_RS06935 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily Eco28_RS06935 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS06935 IPR005288 L-aspartate oxidase Eco28_RS06940 IPR007627 RNA polymerase sigma-70 region 2 Eco28_RS06940 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 Eco28_RS06940 IPR039425 RNA polymerase sigma-70 like Eco28_RS06940 IPR013325 RNA polymerase sigma factor, region 2 Eco28_RS06940 IPR014286 RNA polymerase sigma-70 RpoE type Eco28_RS06940 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site Eco28_RS06940 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS06940 IPR013324 RNA polymerase sigma factor, region 3/4-like Eco28_RS06940 IPR014284 RNA polymerase sigma-70 like domain Eco28_RS06945 IPR005573 Anti sigma-E protein RseA, C-terminal Eco28_RS06945 IPR005572 Anti sigma-E protein RseA, N-terminal Eco28_RS06945 IPR036147 Anti sigma-E protein RseA, N-terminal domain superfamily Eco28_RS06945 IPR026279 Sigma-E factor negative regulatory protein RseA Eco28_RS06950 IPR033436 MucB/RseB, C-terminal Eco28_RS06950 IPR038484 MucB/RseB, C-terminal domain superfamily Eco28_RS06950 IPR033434 MucB/RseB, N-terminal Eco28_RS06950 IPR005588 MucB/RseB Eco28_RS06955 IPR007359 Positive regulator of sigma(E), RseC/MucC Eco28_RS06955 IPR026268 Protein RseC Eco28_RS06960 IPR000795 Transcription factor, GTP-binding domain Eco28_RS06960 IPR005225 Small GTP-binding protein domain Eco28_RS06960 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS06960 IPR035654 Elongation factor 4, domain IV Eco28_RS06960 IPR013842 GTP-binding protein LepA, C-terminal Eco28_RS06960 IPR038363 LepA, C-terminal domain superfamily Eco28_RS06960 IPR031157 Tr-type G domain, conserved site Eco28_RS06960 IPR004161 Translation elongation factor EFTu-like, domain 2 Eco28_RS06960 IPR000640 Elongation factor EFG, domain V-like Eco28_RS06960 IPR035647 EF-G domain III/V-like Eco28_RS06960 IPR006297 Elongation factor 4 Eco28_RS06965 IPR019757 Peptidase S26A, signal peptidase I, lysine active site Eco28_RS06965 IPR019756 Peptidase S26A, signal peptidase I, serine active site Eco28_RS06965 IPR019533 Peptidase S26 Eco28_RS06965 IPR019758 Peptidase S26A, signal peptidase I, conserved site Eco28_RS06965 IPR036286 LexA/Signal peptidase-like superfamily Eco28_RS06965 IPR000223 Peptidase S26A, signal peptidase I Eco28_RS06975 IPR036389 Ribonuclease III, endonuclease domain superfamily Eco28_RS06975 IPR000999 Ribonuclease III domain Eco28_RS06975 IPR011907 Ribonuclease III Eco28_RS06975 IPR014720 Double-stranded RNA-binding domain Eco28_RS06980 IPR004044 K Homology domain, type 2 Eco28_RS06980 IPR005225 Small GTP-binding protein domain Eco28_RS06980 IPR005662 GTP-binding protein Era Eco28_RS06980 IPR009019 K homology domain superfamily, prokaryotic type Eco28_RS06980 IPR006073 GTP binding domain Eco28_RS06980 IPR015946 K homology domain-like, alpha/beta Eco28_RS06980 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS06980 IPR030388 Era-type guanine nucleotide-binding (G) domain Eco28_RS06985 IPR003717 Recombination protein O, RecO Eco28_RS06985 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS06985 IPR022572 DNA replication/recombination mediator RecO, N-terminal Eco28_RS06985 IPR037278 ARFGAP/RecO-like zinc finger Eco28_RS06990 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ Eco28_RS06990 IPR036130 Pyridoxine 5'-phosphate synthase Eco28_RS06990 IPR013785 Aldolase-type TIM barrel Eco28_RS06995 IPR008278 4'-phosphopantetheinyl transferase domain Eco28_RS06995 IPR004568 Phosphopantetheine-protein transferase domain Eco28_RS06995 IPR002582 Holo-[acyl carrier protein] synthase Eco28_RS06995 IPR037143 4'-phosphopantetheinyl transferase domain superfamily Eco28_RS07015 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS07015 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS07020 IPR001347 Sugar isomerase (SIS) Eco28_RS07020 IPR035472 RpiR-like, SIS domain Eco28_RS07020 IPR000281 Helix-turn-helix protein RpiR Eco28_RS07020 IPR009057 Homeobox-like domain superfamily Eco28_RS07020 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS07025 IPR023214 HAD superfamily Eco28_RS07025 IPR006435 HAD-superfamily hydrolase, subfamily IF, YfhB Eco28_RS07025 IPR036412 HAD-like superfamily Eco28_RS07030 IPR028883 tRNA-specific adenosine deaminase Eco28_RS07030 IPR016192 APOBEC/CMP deaminase, zinc-binding Eco28_RS07030 IPR016193 Cytidine deaminase-like Eco28_RS07030 IPR002125 Cytidine and deoxycytidylate deaminase domain Eco28_RS07035 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS07035 IPR008258 Transglycosylase SLT domain 1 Eco28_RS07035 IPR023703 Membrane-bound lytic murein transglycosylase F Eco28_RS07035 IPR023346 Lysozyme-like domain superfamily Eco28_RS07035 IPR000189 Prokaryotic transglycosylase, active site Eco28_RS07045 IPR017926 Glutamine amidotransferase Eco28_RS07045 IPR010073 Phosphoribosylformylglycinamidine synthase PurL Eco28_RS07045 IPR036676 PurM-like, C-terminal domain superfamily Eco28_RS07045 IPR029062 Class I glutamine amidotransferase-like Eco28_RS07045 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily Eco28_RS07045 IPR036921 PurM-like, N-terminal domain superfamily Eco28_RS07045 IPR010918 PurM-like, C-terminal domain Eco28_RS07045 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain Eco28_RS07045 IPR040707 Phosphoribosylformylglycinamidine synthase, N-terminal Eco28_RS07050 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS07050 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS07050 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS07050 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS07050 IPR005467 Histidine kinase domain Eco28_RS07050 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS07055 IPR025262 Quorum-sensing regulator protein G Eco28_RS07060 IPR003593 AAA+ ATPase domain Eco28_RS07060 IPR009057 Homeobox-like domain superfamily Eco28_RS07060 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS07060 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS07060 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS07060 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS07060 IPR011006 CheY-like superfamily Eco28_RS07060 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS07060 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS07065 IPR002187 Nitrogen regulatory protein PII Eco28_RS07065 IPR011322 Nitrogen regulatory PII-like, alpha/beta Eco28_RS07065 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Eco28_RS07065 IPR017918 Nitrogen regulatory protein PII, conserved site Eco28_RS07065 IPR002332 Nitrogen regulatory protein P-II, urydylation site Eco28_RS07070 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Eco28_RS07070 IPR017938 Riboflavin synthase-like beta-barrel Eco28_RS07070 IPR001433 Oxidoreductase FAD/NAD(P)-binding Eco28_RS07070 IPR000971 Globin Eco28_RS07070 IPR012292 Globin/Protoglobin Eco28_RS07070 IPR009050 Globin-like superfamily Eco28_RS07070 IPR023950 Flavohemoprotein Eco28_RS07070 IPR017927 FAD-binding domain, ferredoxin reductase-type Eco28_RS07070 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Eco28_RS07075 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS07075 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS07075 IPR001085 Serine hydroxymethyltransferase Eco28_RS07075 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site Eco28_RS07075 IPR039429 Serine hydroxymethyltransferase-like domain Eco28_RS07075 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS07080 IPR000600 ROK family Eco28_RS07080 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS07080 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS07085 IPR033396 Domain of unknown function DUF5107 Eco28_RS07085 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS07085 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS07085 IPR019734 Tetratricopeptide repeat Eco28_RS07090 IPR025997 Periplasmic binding protein Eco28_RS07090 IPR028082 Periplasmic binding protein-like I Eco28_RS07095 IPR003593 AAA+ ATPase domain Eco28_RS07095 IPR003439 ABC transporter-like Eco28_RS07095 IPR017871 ABC transporter, conserved site Eco28_RS07095 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS07100 IPR001851 ABC transporter, permease Eco28_RS07105 IPR036291 NAD(P)-binding domain superfamily Eco28_RS07105 IPR011032 GroES-like superfamily Eco28_RS07105 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS07105 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS07105 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS07105 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS07110 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase Eco28_RS07110 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS07110 IPR014718 Glycoside hydrolase-type carbohydrate-binding Eco28_RS07115 IPR032808 DoxX family Eco28_RS07120 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS07120 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Eco28_RS07120 IPR023753 FAD/NAD(P)-binding domain Eco28_RS07120 IPR023744 3-phenylpropionate/cinnamic acid dioxygenase, ferredoxin--NAD(+) reductase subunit Eco28_RS07120 IPR028202 Reductase, C-terminal Eco28_RS07125 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS07125 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS07125 IPR036291 NAD(P)-binding domain superfamily Eco28_RS07125 IPR023643 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase HcaB Eco28_RS07130 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily Eco28_RS07130 IPR017941 Rieske [2Fe-2S] iron-sulphur domain Eco28_RS07130 IPR023739 3-phenylpropionate/cinnamic acid dioxygenase, ferredoxin subunit Eco28_RS07135 IPR000391 Ring-hydroxylating dioxygenase beta subunit Eco28_RS07135 IPR032710 NTF2-like domain superfamily Eco28_RS07135 IPR023712 3-phenylpropionate/cinnamic acid dioxygenase, beta subunit Eco28_RS07140 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit Eco28_RS07140 IPR020875 3-phenylpropionate/cinnamic acid dioxygenase, alpha subunit Eco28_RS07140 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain Eco28_RS07140 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site Eco28_RS07140 IPR017941 Rieske [2Fe-2S] iron-sulphur domain Eco28_RS07140 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily Eco28_RS07145 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS07145 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS07145 IPR000847 Transcription regulator HTH, LysR Eco28_RS07145 IPR005119 LysR, substrate-binding Eco28_RS07150 IPR036259 MFS transporter superfamily Eco28_RS07150 IPR026032 Probable 3-phenylpropionic acid transporter Eco28_RS07150 IPR024989 Major facilitator superfamily associated domain Eco28_RS07155 IPR036634 PRD domain superfamily Eco28_RS07155 IPR011608 PRD domain Eco28_RS07160 IPR029058 Alpha/Beta hydrolase fold Eco28_RS07160 IPR022742 Serine aminopeptidase, S33 Eco28_RS07165 IPR000760 Inositol monophosphatase-like Eco28_RS07165 IPR020583 Inositol monophosphatase, metal-binding site Eco28_RS07165 IPR022337 Inositol monophosphatase, SuhB Eco28_RS07165 IPR020550 Inositol monophosphatase, conserved site Eco28_RS07165 IPR033942 Inositol monophosphatase Eco28_RS07170 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Eco28_RS07170 IPR029028 Alpha/beta knot methyltransferases Eco28_RS07170 IPR004384 RNA methyltransferase TrmJ/LasT Eco28_RS07170 IPR001537 tRNA/rRNA methyltransferase, SpoU type Eco28_RS07175 IPR030489 Transcription regulator Rrf2-type, conserved site Eco28_RS07175 IPR000944 Transcription regulator Rrf2-type Eco28_RS07175 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS07175 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS07175 IPR010242 Transcription factor HTH, IscR Eco28_RS07180 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS07180 IPR000192 Aminotransferase class V domain Eco28_RS07180 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Eco28_RS07180 IPR010240 Cysteine desulfurase IscS Eco28_RS07180 IPR016454 Cysteine desulfurase Eco28_RS07180 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS07180 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS07185 IPR011339 ISC system FeS cluster assembly, IscU scaffold Eco28_RS07185 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal Eco28_RS07190 IPR011302 Iron-binding protein IscA, proteobacteria Eco28_RS07190 IPR017870 FeS cluster insertion, C-terminal, conserved site Eco28_RS07190 IPR016092 FeS cluster insertion protein Eco28_RS07190 IPR000361 FeS cluster biogenesis Eco28_RS07190 IPR035903 HesB-like domain superfamily Eco28_RS07195 IPR036869 Chaperone J-domain superfamily Eco28_RS07195 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain Eco28_RS07195 IPR036386 HscB, C-terminal domain superfamily Eco28_RS07195 IPR004640 Co-chaperone Hsc20 Eco28_RS07195 IPR001623 DnaJ domain Eco28_RS07200 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Eco28_RS07200 IPR010236 ISC system FeS cluster assembly, HscA chaperone Eco28_RS07200 IPR013126 Heat shock protein 70 family Eco28_RS07200 IPR018181 Heat shock protein 70, conserved site Eco28_RS07200 IPR042039 HscA chaperone, nucleotide-binding domain Eco28_RS07200 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Eco28_RS07205 IPR001055 Adrenodoxin Eco28_RS07205 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS07205 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria Eco28_RS07205 IPR018298 Adrenodoxin, iron-sulphur binding site Eco28_RS07205 IPR012675 Beta-grasp domain superfamily Eco28_RS07205 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS07210 IPR036762 IscX-like superfamily Eco28_RS07210 IPR007479 ISC system FeS cluster assembly, IscX Eco28_RS07215 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal Eco28_RS07215 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B Eco28_RS07215 IPR001346 Interferon regulatory factor DNA-binding domain Eco28_RS07215 IPR008330 Peptidase M17, peptidase B Eco28_RS07220 IPR027945 SseB protein, C-terminal Eco28_RS07220 IPR009839 SseB protein N-terminal domain Eco28_RS07225 IPR001307 Thiosulphate sulfurtransferase, conserved site Eco28_RS07225 IPR036873 Rhodanese-like domain superfamily Eco28_RS07225 IPR001763 Rhodanese-like domain Eco28_RS07230 IPR041246 Bacterial alpha-2-macroglobulin MG10 domain Eco28_RS07230 IPR001599 Alpha-2-macroglobulin Eco28_RS07230 IPR002890 Macroglobulin domain Eco28_RS07230 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Eco28_RS07230 IPR041462 Bacterial Alpha-2-macroglobulin, MG6 domain Eco28_RS07230 IPR041203 Bacterial Alpha-2-macroglobulin, MG5 domain Eco28_RS07230 IPR011625 Alpha-2-macroglobulin, bait region domain Eco28_RS07230 IPR011626 Alpha-macroglobulin-like, TED domain Eco28_RS07230 IPR040639 Alpha-2-macroglobulin, MG1 domain Eco28_RS07230 IPR026284 Alpha-2-macroglobulin, bacteria Eco28_RS07230 IPR021868 Alpha-2-macroglobulin MG3 domain Eco28_RS07235 IPR009647 Penicillin-binding, C-terminal Eco28_RS07235 IPR011815 Penicillin-binding protein 1C Eco28_RS07235 IPR023346 Lysozyme-like domain superfamily Eco28_RS07235 IPR001264 Glycosyl transferase, family 51 Eco28_RS07235 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS07235 IPR036950 Penicillin binding protein transglycosylase domain Eco28_RS07235 IPR001460 Penicillin-binding protein, transpeptidase Eco28_RS07240 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS07240 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS07240 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site Eco28_RS07240 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS07240 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS07240 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS07240 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS07240 IPR006656 Molybdopterin oxidoreductase Eco28_RS07240 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE Eco28_RS07245 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS07245 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS07245 IPR014297 Dimethylsulphoxide reductase, chain B Eco28_RS07250 IPR007059 DMSO reductase anchor subunit (DmsC) Eco28_RS07260 IPR023005 Nucleoside diphosphate kinase, active site Eco28_RS07260 IPR036850 Nucleoside diphosphate kinase-like domain superfamily Eco28_RS07260 IPR034907 Nucleoside diphosphate kinase-like domain Eco28_RS07260 IPR001564 Nucleoside diphosphate kinase Eco28_RS07265 IPR007197 Radical SAM Eco28_RS07265 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr Eco28_RS07265 IPR027492 Dual-specificity RNA methyltransferase RlmN Eco28_RS07265 IPR040072 Methyltransferase (Class A) Eco28_RS07265 IPR013785 Aldolase-type TIM barrel Eco28_RS07270 IPR025194 Domain of unknown function DUF4115 Eco28_RS07270 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS07270 IPR023690 Cytoskeleton protein RodZ Eco28_RS07270 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS07275 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial Eco28_RS07275 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type Eco28_RS07275 IPR011005 Dihydropteroate synthase-like Eco28_RS07280 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS07280 IPR036621 Anticodon-binding domain superfamily Eco28_RS07280 IPR015807 Histidine-tRNA ligase Eco28_RS07280 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Eco28_RS07280 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit Eco28_RS07280 IPR033656 Histidyl-anticodon-binding Eco28_RS07280 IPR004154 Anticodon-binding Eco28_RS07285 IPR026039 Uncharacterised protein family UPF0070 Eco28_RS07285 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS07285 IPR018704 Tetratricopeptide repeat-like domain Eco28_RS07290 IPR015943 WD40/YVTN repeat-like-containing domain superfamily Eco28_RS07290 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Eco28_RS07290 IPR002372 Pyrrolo-quinoline quinone repeat Eco28_RS07290 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Eco28_RS07290 IPR017687 Outer membrane protein assembly factor BamB Eco28_RS07295 IPR005225 Small GTP-binding protein domain Eco28_RS07295 IPR032859 GTPase Der, C-terminal KH-domain-like Eco28_RS07295 IPR006073 GTP binding domain Eco28_RS07295 IPR016484 GTP-binding protein EngA Eco28_RS07295 IPR031166 EngA-type guanine nucleotide-binding (G) domain Eco28_RS07295 IPR015946 K homology domain-like, alpha/beta Eco28_RS07295 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS07300 IPR029037 YfgJ-like Eco28_RS07300 IPR010807 Protein of unknown function DUF1407 Eco28_RS07305 IPR020579 Exonuclease VII, large subunit, C-terminal Eco28_RS07305 IPR025824 OB-fold nucleic acid binding domain Eco28_RS07305 IPR003753 Exonuclease VII, large subunit Eco28_RS07310 IPR000644 CBS domain Eco28_RS07310 IPR005990 Inosine-5'-monophosphate dehydrogenase Eco28_RS07310 IPR001093 IMP dehydrogenase/GMP reductase Eco28_RS07310 IPR013785 Aldolase-type TIM barrel Eco28_RS07310 IPR015875 IMP dehydrogenase / GMP reductase, conserved site Eco28_RS07315 IPR004739 GMP synthase, glutamine amidotransferase Eco28_RS07315 IPR022955 GMP synthase Eco28_RS07315 IPR025777 GMP synthetase ATP pyrophosphatase domain Eco28_RS07315 IPR001674 GMP synthase, C-terminal Eco28_RS07315 IPR017926 Glutamine amidotransferase Eco28_RS07315 IPR029062 Class I glutamine amidotransferase-like Eco28_RS07315 IPR022310 NAD/GMP synthase Eco28_RS07315 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS07325 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Eco28_RS07325 IPR029052 Metallo-dependent phosphatase-like Eco28_RS07325 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase Eco28_RS07350 IPR010584 Exodeoxyribonuclease 8 Eco28_RS07350 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain Eco28_RS07430 IPR018925 Phage terminase small subunit Eco28_RS07430 IPR038713 Terminase small subunit, N-terminal domain superfamily Eco28_RS07430 IPR005335 Terminase small subunit Eco28_RS07555 IPR002656 Acyltransferase 3 Eco28_RS07570 IPR000726 Glycoside hydrolase, family 19, catalytic Eco28_RS07570 IPR023346 Lysozyme-like domain superfamily Eco28_RS07580 IPR020231 Uncharacterised protein family, YfgI Eco28_RS07585 IPR008816 Glycine zipper 2TM domain Eco28_RS07595 IPR022576 Protein of unknown function DUF2633 Eco28_RS07605 IPR001633 EAL domain Eco28_RS07605 IPR007895 MASE1 Eco28_RS07605 IPR035919 EAL domain superfamily Eco28_RS07605 IPR000160 GGDEF domain Eco28_RS07610 IPR022371 Exopolyphosphatase Eco28_RS07610 IPR003695 Ppx/GppA phosphatase Eco28_RS07610 IPR030673 Pyrophosphatase, GppA/Ppx-type Eco28_RS07615 IPR036830 Polyphosphate kinase middle domain superfamily Eco28_RS07615 IPR001736 Phospholipase D/Transphosphatidylase Eco28_RS07615 IPR025200 Polyphosphate kinase C-terminal domain 2 Eco28_RS07615 IPR025198 Polyphosphate kinase N-terminal domain Eco28_RS07615 IPR036832 Polyphosphate kinase N-terminal domain superfamily Eco28_RS07615 IPR024953 Polyphosphate kinase middle domain Eco28_RS07615 IPR003414 Polyphosphate kinase Eco28_RS07615 IPR041108 Polyphosphate kinase, C-terminal domain 1 Eco28_RS07620 IPR002376 Formyl transferase, N-terminal Eco28_RS07620 IPR001555 Phosphoribosylglycinamide formyltransferase, active site Eco28_RS07620 IPR004607 Phosphoribosylglycinamide formyltransferase Eco28_RS07620 IPR036477 Formyl transferase, N-terminal domain superfamily Eco28_RS07625 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase Eco28_RS07625 IPR036921 PurM-like, N-terminal domain superfamily Eco28_RS07625 IPR016188 PurM-like, N-terminal domain Eco28_RS07625 IPR036676 PurM-like, C-terminal domain superfamily Eco28_RS07625 IPR010918 PurM-like, C-terminal domain Eco28_RS07635 IPR005765 Uracil phosphoribosyl transferase Eco28_RS07635 IPR000836 Phosphoribosyltransferase domain Eco28_RS07635 IPR029057 Phosphoribosyltransferase-like Eco28_RS07635 IPR034332 Uracil phosphoribosyltransferase, bacterial-type Eco28_RS07640 IPR029935 Uracil permease Eco28_RS07640 IPR006042 Xanthine/uracil permease Eco28_RS07640 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS07645 IPR022864 DnaA regulatory inactivator Hda, Enterobacteriaceae Eco28_RS07645 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS07645 IPR017788 DnaA regulatory inactivator Hda Eco28_RS07645 IPR013317 Chromosomal replication initiator protein DnaA Eco28_RS07645 IPR020591 Chromosomal replication control, initiator DnaA-like Eco28_RS07650 IPR006660 Arsenate reductase-like Eco28_RS07650 IPR006659 Arsenate reductase Eco28_RS07650 IPR036249 Thioredoxin-like superfamily Eco28_RS07655 IPR030873 Beta-barrel assembly-enhancing protease Eco28_RS07655 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS07655 IPR001915 Peptidase M48 Eco28_RS07660 IPR002549 Transmembrane protein TqsA-like Eco28_RS07665 IPR000292 Formate/nitrite transporter Eco28_RS07665 IPR024002 Formate/nitrite transporter, conserved site Eco28_RS07665 IPR023271 Aquaporin-like Eco28_RS07670 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS07670 IPR003593 AAA+ ATPase domain Eco28_RS07670 IPR009057 Homeobox-like domain superfamily Eco28_RS07670 IPR029016 GAF-like domain superfamily Eco28_RS07670 IPR003018 GAF domain Eco28_RS07670 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS07670 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS07670 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS07670 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS07675 IPR010005 Formate hydrogenlyase maturation HycH Eco28_RS07680 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Eco28_RS07680 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit Eco28_RS07685 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS07685 IPR010226 NADH-quinone oxidoreductase, chain I Eco28_RS07685 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS07690 IPR001501 Nickel-dependent hydrogenase, large subunit Eco28_RS07690 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Eco28_RS07690 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit Eco28_RS07690 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Eco28_RS07690 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Eco28_RS07690 IPR029014 [NiFe]-hydrogenase, large subunit Eco28_RS07690 IPR001135 NADH-quinone oxidoreductase, subunit D Eco28_RS07695 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Eco28_RS07695 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Eco28_RS07700 IPR038730 Hydrogenase-4 component E-like Eco28_RS07700 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Eco28_RS07705 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Eco28_RS07705 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Eco28_RS07710 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site Eco28_RS07710 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H Eco28_RS07715 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Eco28_RS07715 IPR003918 NADH:ubiquinone oxidoreductase Eco28_RS07720 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS07720 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS07725 IPR036249 Thioredoxin-like superfamily Eco28_RS07725 IPR024706 Peroxiredoxin, AhpC-type Eco28_RS07725 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant Eco28_RS07725 IPR013766 Thioredoxin domain Eco28_RS07730 IPR002912 ACT domain Eco28_RS07730 IPR016867 Glycine cleavage system transcriptional repressor Eco28_RS07735 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA Eco28_RS07735 IPR002220 DapA-like Eco28_RS07735 IPR020625 Schiff base-forming aldolase, active site Eco28_RS07735 IPR020624 Schiff base-forming aldolase, conserved site Eco28_RS07735 IPR013785 Aldolase-type TIM barrel Eco28_RS07740 IPR014524 Outer membrane protein assembly factor BamC Eco28_RS07740 IPR042268 Outer membrane protein assembly factor BamC, C-terminal Eco28_RS07740 IPR010653 NlpB/DapX lipoprotein Eco28_RS07745 IPR018236 SAICAR synthetase, conserved site Eco28_RS07745 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase Eco28_RS07745 IPR028923 SAICAR synthetase/ADE2, N-terminal Eco28_RS07745 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase Eco28_RS07750 IPR007159 SpoVT-AbrB domain Eco28_RS07750 IPR037914 SpoVT-AbrB domain superfamily Eco28_RS07755 IPR022907 VapC family Eco28_RS07755 IPR002716 PIN domain Eco28_RS07755 IPR029060 PIN-like domain superfamily Eco28_RS07760 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative Eco28_RS07765 IPR032672 TmcA/NAT10/Kre33 Eco28_RS07765 IPR013562 tRNA(Met) cytidine acetyltransferase TmcA, N-terminal Eco28_RS07765 IPR033442 tRNA(Met) cytidine acetyltransferase TmcA, tRNA-binding domain Eco28_RS07765 IPR024914 tRNA(Met) cytidine acetyltransferase TmcA Eco28_RS07765 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS07765 IPR007807 Helicase domain Eco28_RS07765 IPR000182 GNAT domain Eco28_RS07765 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS07765 IPR038321 TmcA, C-terminal domain superfamily Eco28_RS07770 IPR003140 Phospholipase/carboxylesterase/thioesterase Eco28_RS07770 IPR029058 Alpha/Beta hydrolase fold Eco28_RS07775 IPR020910 Uncharacterised protein family UPF0370 Eco28_RS07780 IPR011650 Peptidase M20, dimerisation domain Eco28_RS07780 IPR036264 Bacterial exopeptidase dimerisation domain Eco28_RS07780 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria Eco28_RS07780 IPR002933 Peptidase M20 Eco28_RS07780 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site Eco28_RS07785 IPR006660 Arsenate reductase-like Eco28_RS07785 IPR006504 Transcriptional regulator Spx/MgsR Eco28_RS07785 IPR036249 Thioredoxin-like superfamily Eco28_RS07800 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 Eco28_RS07800 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Eco28_RS07800 IPR001036 Acriflavin resistance protein Eco28_RS07805 IPR003660 HAMP domain Eco28_RS07805 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS07805 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS07805 IPR005467 Histidine kinase domain Eco28_RS07805 IPR029095 NarX-like, N-terminal Eco28_RS07805 IPR042295 NarX-like, N-terminal domain superfamily Eco28_RS07805 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing Eco28_RS07805 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain Eco28_RS07810 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS07810 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS07810 IPR028261 Dihydroprymidine dehydrogenase domain II Eco28_RS07810 IPR023753 FAD/NAD(P)-binding domain Eco28_RS07810 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 Eco28_RS07810 IPR009051 Alpha-helical ferredoxin Eco28_RS07810 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS07815 IPR000086 NUDIX hydrolase domain Eco28_RS07815 IPR004385 Nucleoside diphosphate pyrophosphatase Eco28_RS07815 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS07820 IPR009560 Protein of unknown function DUF1176 Eco28_RS07825 IPR033248 Transketolase, C-terminal domain Eco28_RS07825 IPR033247 Transketolase family Eco28_RS07825 IPR029061 Thiamin diphosphate-binding fold Eco28_RS07825 IPR005474 Transketolase, N-terminal Eco28_RS07825 IPR005475 Transketolase-like, pyrimidine-binding domain Eco28_RS07825 IPR005478 Transketolase, bacterial-like Eco28_RS07825 IPR020826 Transketolase binding site Eco28_RS07825 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Eco28_RS07830 IPR004730 Transaldolase type 1 Eco28_RS07830 IPR013785 Aldolase-type TIM barrel Eco28_RS07830 IPR018225 Transaldolase, active site Eco28_RS07830 IPR001585 Transaldolase/Fructose-6-phosphate aldolase Eco28_RS07840 IPR002505 Phosphate acetyl/butaryl transferase Eco28_RS07840 IPR042112 Phosphate acetyltransferase, domain 2 Eco28_RS07840 IPR042113 Phosphate acetyltransferase, domain 1 Eco28_RS07840 IPR036291 NAD(P)-binding domain superfamily Eco28_RS07840 IPR012188 NAD(P)-dependent malic enzyme Eco28_RS07840 IPR037062 Malic enzyme, N-terminal domain superfamily Eco28_RS07840 IPR012301 Malic enzyme, N-terminal domain Eco28_RS07840 IPR015884 Malic enzyme, conserved site Eco28_RS07840 IPR012302 Malic enzyme, NAD-binding Eco28_RS07845 IPR000249 Microcompartment protein, bacteria Eco28_RS07845 IPR009307 Ethanolamine utilisation EutS Eco28_RS07845 IPR037233 CcmK-like superfamily Eco28_RS07850 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV Eco28_RS07850 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS07855 IPR010424 Ethanolamine utilisation EutQ Eco28_RS07855 IPR011051 RmlC-like cupin domain superfamily Eco28_RS07855 IPR014710 RmlC-like jelly roll fold Eco28_RS07860 IPR009194 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT-type Eco28_RS07860 IPR016030 Cobalamin adenosyltransferase-like Eco28_RS07860 IPR036451 Cobalamin adenosyltransferase-like superfamily Eco28_RS07865 IPR042112 Phosphate acetyltransferase, domain 2 Eco28_RS07865 IPR002505 Phosphate acetyl/butaryl transferase Eco28_RS07865 IPR012147 Phosphate acetyl/butyryltransferase Eco28_RS07865 IPR004614 Phosphate acetyltransferase Eco28_RS07865 IPR042113 Phosphate acetyltransferase, domain 1 Eco28_RS07870 IPR020808 Bacterial microcompartments protein, conserved site Eco28_RS07870 IPR000249 Microcompartment protein, bacteria Eco28_RS07870 IPR037233 CcmK-like superfamily Eco28_RS07875 IPR004992 Ethanolamine utilization protein EutN/carboxysome structural protein Ccml Eco28_RS07875 IPR036677 EutN/Ccml superfamily Eco28_RS07880 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS07880 IPR015590 Aldehyde dehydrogenase domain Eco28_RS07880 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS07880 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS07880 IPR012408 Acetaldehyde/propionaldehyde dehydrogenase, EutE/PduP-related Eco28_RS07885 IPR013366 Ethanolamine utilisation EutJ Eco28_RS07890 IPR039697 Iron-type alcohol dehydrogenase-like Eco28_RS07890 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA Eco28_RS07890 IPR018211 Alcohol dehydrogenase, iron-type, conserved site Eco28_RS07895 IPR007441 Ethanolamine utilisation protein EutH Eco28_RS07900 IPR009377 Ethanolamine utilisation EutA Eco28_RS07905 IPR013785 Aldolase-type TIM barrel Eco28_RS07905 IPR010628 Ethanolamine ammonia lyase large subunit Eco28_RS07910 IPR009246 Ethanolamine ammonia-lyase light chain Eco28_RS07910 IPR042251 Ethanolamine ammonia-lyase light chain, C-terminal Eco28_RS07910 IPR042255 Ethanolamine ammonia-lyase light chain, N-terminal Eco28_RS07915 IPR009193 Polyhedral organelle shell protein, EutL/PduB type Eco28_RS07915 IPR000249 Microcompartment protein, bacteria Eco28_RS07915 IPR037233 CcmK-like superfamily Eco28_RS07915 IPR030983 Ethanolamine utilization protein EutL Eco28_RS07920 IPR020808 Bacterial microcompartments protein, conserved site Eco28_RS07920 IPR037233 CcmK-like superfamily Eco28_RS07920 IPR032298 Ethanolamine utilization protein EutK, C-terminal Eco28_RS07920 IPR000249 Microcompartment protein, bacteria Eco28_RS07920 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS07925 IPR009057 Homeobox-like domain superfamily Eco28_RS07925 IPR018062 HTH domain AraC-type, conserved site Eco28_RS07925 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS07930 IPR018375 Coproporphyrinogen III oxidase, conserved site Eco28_RS07930 IPR001260 Coproporphyrinogen III oxidase, aerobic Eco28_RS07930 IPR036406 Oxygen-dependent coproporphyrinogen III oxidase superfamily Eco28_RS07935 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain Eco28_RS07935 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS07940 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS07940 IPR023072 Acetyltransferase, YpeA Eco28_RS07940 IPR000182 GNAT domain Eco28_RS07945 IPR021318 Protein of unknown function DUF2919 Eco28_RS07950 IPR010938 Protein of unknown function DUF1131 Eco28_RS07950 IPR038714 YfeY-like superfamily Eco28_RS07955 IPR011008 Dimeric alpha-beta barrel Eco28_RS07955 IPR006314 Dyp-type peroxidase Eco28_RS07960 IPR001466 Beta-lactamase-related Eco28_RS07960 IPR022849 Peptidase S12, YfeW/YbbE-like Eco28_RS07960 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS07965 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Eco28_RS07965 IPR036878 Glucose permease domain IIB Eco28_RS07965 IPR001996 Phosphotransferase system, IIB component, type 1 Eco28_RS07965 IPR003352 Phosphotransferase system, EIIC Eco28_RS07965 IPR013013 Phosphotransferase system, EIIC component, type 1 Eco28_RS07970 IPR005486 Glucokinase regulatory protein, conserved site Eco28_RS07970 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein Eco28_RS07970 IPR001347 Sugar isomerase (SIS) Eco28_RS07970 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ Eco28_RS07975 IPR035472 RpiR-like, SIS domain Eco28_RS07975 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS07975 IPR001347 Sugar isomerase (SIS) Eco28_RS07975 IPR022821 Transcription regulator HTH, MurR Eco28_RS07975 IPR009057 Homeobox-like domain superfamily Eco28_RS07975 IPR000281 Helix-turn-helix protein RpiR Eco28_RS07980 IPR036291 NAD(P)-binding domain superfamily Eco28_RS07980 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS07985 IPR000957 Sulphate/thiosulphate-binding, conserved site Eco28_RS07985 IPR034408 Sulphate/thiosulphate-binding site Eco28_RS07985 IPR005669 Thiosulphate/Sulfate-binding protein Eco28_RS07990 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS07990 IPR035906 MetI-like superfamily Eco28_RS07990 IPR005667 Sulphate ABC transporter permease protein 2 Eco28_RS07990 IPR011865 Sulphate ABC transporter, permease protein CysT Eco28_RS07995 IPR011866 Sulphate ABC transporter, permease protein CysW Eco28_RS07995 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS07995 IPR035906 MetI-like superfamily Eco28_RS07995 IPR005667 Sulphate ABC transporter permease protein 2 Eco28_RS08000 IPR003593 AAA+ ATPase domain Eco28_RS08000 IPR017871 ABC transporter, conserved site Eco28_RS08000 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS08000 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS08000 IPR005666 Sulphate transport system permease protein 1 Eco28_RS08000 IPR003439 ABC transporter-like Eco28_RS08000 IPR014769 ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal Eco28_RS08005 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Eco28_RS08005 IPR005856 Cysteine synthase Eco28_RS08005 IPR005858 Cysteine synthase CysM Eco28_RS08005 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site Eco28_RS08005 IPR001926 Pyridoxal-phosphate dependent enzyme Eco28_RS08010 IPR035242 Protein of unknown function DUF5329 Eco28_RS08015 IPR023479 Pyridoxine/pyridoxal/pyridoxamine kinase Eco28_RS08015 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Eco28_RS08015 IPR004625 Pyridoxine kinase Eco28_RS08015 IPR029056 Ribokinase-like Eco28_RS08020 IPR011055 Duplicated hybrid motif Eco28_RS08020 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 Eco28_RS08025 IPR036637 Phosphohistidine domain superfamily Eco28_RS08025 IPR008279 PEP-utilising enzyme, mobile domain Eco28_RS08025 IPR018274 PEP-utilising enzyme, active site Eco28_RS08025 IPR000121 PEP-utilising enzyme, C-terminal Eco28_RS08025 IPR023151 PEP-utilising enzyme, conserved site Eco28_RS08025 IPR024692 Phosphotransferase system, enzyme I Eco28_RS08025 IPR006318 Phosphotransferase system, enzyme I-like Eco28_RS08025 IPR008731 Phosphotransferase system, enzyme I N-terminal Eco28_RS08025 IPR036618 PtsI, HPr-binding domain superfamily Eco28_RS08025 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS08025 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS08030 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Eco28_RS08030 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Eco28_RS08030 IPR000032 Phosphocarrier protein HPr-like Eco28_RS08030 IPR035895 HPr-like superfamily Eco28_RS08035 IPR005859 Cysteine synthase CysK Eco28_RS08035 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Eco28_RS08035 IPR001926 Pyridoxal-phosphate dependent enzyme Eco28_RS08035 IPR005856 Cysteine synthase Eco28_RS08035 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site Eco28_RS08040 IPR022985 Sulfate transporter CysZ Eco28_RS08045 IPR007449 ZipA, C-terminal FtsZ-binding domain Eco28_RS08045 IPR011919 Cell division protein ZipA Eco28_RS08045 IPR036765 ZipA, C-terminal FtsZ-binding domain superfamily Eco28_RS08050 IPR036420 BRCT domain superfamily Eco28_RS08050 IPR001357 BRCT domain Eco28_RS08050 IPR018239 NAD-dependent DNA ligase, active site Eco28_RS08050 IPR033136 NAD-dependent DNA ligase, conserved site Eco28_RS08050 IPR001679 NAD-dependent DNA ligase Eco28_RS08050 IPR041663 DisA/LigA, helix-hairpin-helix motif Eco28_RS08050 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS08050 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type Eco28_RS08050 IPR010994 RuvA domain 2-like Eco28_RS08050 IPR013839 NAD-dependent DNA ligase, adenylation Eco28_RS08050 IPR013840 NAD-dependent DNA ligase, N-terminal Eco28_RS08050 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Eco28_RS08050 IPR004150 NAD-dependent DNA ligase, OB-fold Eco28_RS08055 IPR024530 Putative quorum-sensing-regulated virulence factor Eco28_RS08060 IPR038770 Sodium/solute symporter superfamily Eco28_RS08060 IPR016833 Putative sodium bile acid cotransporter Eco28_RS08065 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS08065 IPR000847 Transcription regulator HTH, LysR Eco28_RS08065 IPR005119 LysR, substrate-binding Eco28_RS08065 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS08100 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 Eco28_RS08100 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Eco28_RS08100 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial Eco28_RS08100 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding Eco28_RS08100 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain Eco28_RS08100 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS08100 IPR033910 Glutamyl-tRNA synthetase Eco28_RS08100 IPR000924 Glutamyl/glutaminyl-tRNA synthetase Eco28_RS08105 IPR036515 Transposase IS200-like superfamily Eco28_RS08105 IPR002686 Transposase IS200-like Eco28_RS08115 IPR010749 Protein of unknown function DUF1323 Eco28_RS08115 IPR009061 Putative DNA-binding domain superfamily Eco28_RS08115 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS08115 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS08120 IPR010749 Protein of unknown function DUF1323 Eco28_RS08120 IPR009061 Putative DNA-binding domain superfamily Eco28_RS08135 IPR029787 Nucleotide cyclase Eco28_RS08135 IPR007895 MASE1 Eco28_RS08135 IPR000160 GGDEF domain Eco28_RS08135 IPR035919 EAL domain superfamily Eco28_RS08135 IPR001633 EAL domain Eco28_RS08140 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial Eco28_RS08140 IPR008276 Concentrative nucleoside transporter Eco28_RS08140 IPR002668 Concentrative nucleoside transporter N-terminal domain Eco28_RS08140 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Eco28_RS08140 IPR011657 Concentrative nucleoside transporter C-terminal domain Eco28_RS08145 IPR001046 NRAMP family Eco28_RS08150 IPR019638 Protein of unknown function DUF2502 Eco28_RS08155 IPR022969 Chloride channel YfeO Eco28_RS08155 IPR014743 Chloride channel, core Eco28_RS08155 IPR001807 Chloride channel, voltage gated Eco28_RS08160 IPR003836 Glucokinase Eco28_RS08165 IPR013011 Phosphotransferase system, EIIB component, type 2 Eco28_RS08165 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS08165 IPR003353 Phosphotransferase system, fructose-specific IIB subunit Eco28_RS08165 IPR036095 PTS system IIB component-like superfamily Eco28_RS08170 IPR013014 Phosphotransferase system, EIIC component, type 2 Eco28_RS08170 IPR003352 Phosphotransferase system, EIIC Eco28_RS08175 IPR000587 Creatinase, N-terminal Eco28_RS08175 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Eco28_RS08175 IPR036005 Creatinase/aminopeptidase-like Eco28_RS08175 IPR000994 Peptidase M24 Eco28_RS08175 IPR001714 Peptidase M24, methionine aminopeptidase Eco28_RS08180 IPR008007 Peptidase M42 Eco28_RS08180 IPR023367 Peptidase M42, domain 2 Eco28_RS08185 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS08185 IPR000032 Phosphocarrier protein HPr-like Eco28_RS08185 IPR035895 HPr-like superfamily Eco28_RS08185 IPR036618 PtsI, HPr-binding domain superfamily Eco28_RS08185 IPR004715 Phosphotransferase system, IIA component fructose subfamily Eco28_RS08185 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS08185 IPR016152 Phosphotransferase/anion transporter Eco28_RS08185 IPR000121 PEP-utilising enzyme, C-terminal Eco28_RS08185 IPR008731 Phosphotransferase system, enzyme I N-terminal Eco28_RS08185 IPR002178 PTS EIIA type-2 domain Eco28_RS08185 IPR006318 Phosphotransferase system, enzyme I-like Eco28_RS08185 IPR023151 PEP-utilising enzyme, conserved site Eco28_RS08185 IPR036637 Phosphohistidine domain superfamily Eco28_RS08185 IPR008279 PEP-utilising enzyme, mobile domain Eco28_RS08190 IPR009057 Homeobox-like domain superfamily Eco28_RS08190 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS08190 IPR018062 HTH domain AraC-type, conserved site Eco28_RS08190 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS08195 IPR007492 LytTR DNA-binding domain Eco28_RS08195 IPR011006 CheY-like superfamily Eco28_RS08195 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS08200 IPR010559 Signal transduction histidine kinase, internal region Eco28_RS08200 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS08200 IPR029016 GAF-like domain superfamily Eco28_RS08200 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS08200 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region Eco28_RS08205 IPR004839 Aminotransferase, class I/classII Eco28_RS08205 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS08205 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS08205 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS08215 IPR004960 Bacterial lipid A biosynthesis acyltransferase Eco28_RS08215 IPR030857 Lipid A biosynthesis palmitoleoyltransferase, LpxP Eco28_RS08215 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase Eco28_RS08220 IPR024470 Protein of unknown function DUF2545 Eco28_RS08230 IPR021236 Uncharacterised protein family YfdX Eco28_RS08235 IPR017659 Formyl-CoA:oxalate CoA-transferase Eco28_RS08235 IPR003673 CoA-transferase family III Eco28_RS08235 IPR023606 CoA-transferase family III domain superfamily Eco28_RS08240 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Eco28_RS08240 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Eco28_RS08240 IPR017660 Oxalyl-CoA decarboxylase Eco28_RS08240 IPR029061 Thiamin diphosphate-binding fold Eco28_RS08240 IPR012000 Thiamine pyrophosphate enzyme, central domain Eco28_RS08240 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS08245 IPR004776 Membrane transport protein Eco28_RS08250 IPR023606 CoA-transferase family III domain superfamily Eco28_RS08250 IPR003673 CoA-transferase family III Eco28_RS08255 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS08255 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Eco28_RS08255 IPR005467 Histidine kinase domain Eco28_RS08255 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS08255 IPR036641 HPT domain superfamily Eco28_RS08255 IPR011006 CheY-like superfamily Eco28_RS08255 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS08255 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS08255 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS08255 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS08255 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS08260 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS08260 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS08260 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS08260 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS08260 IPR011006 CheY-like superfamily Eco28_RS08265 IPR005694 Efflux pump membrane protein Eco28_RS08265 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS08270 IPR004638 Drug resistance transporter EmrB-like Eco28_RS08270 IPR036259 MFS transporter superfamily Eco28_RS08270 IPR011701 Major facilitator superfamily Eco28_RS08270 IPR020846 Major facilitator superfamily domain Eco28_RS08275 IPR011780 D-serine ammonia-lyase Eco28_RS08275 IPR001926 Pyridoxal-phosphate dependent enzyme Eco28_RS08275 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site Eco28_RS08275 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Eco28_RS08280 IPR003474 Gluconate transporter Eco28_RS08285 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS08285 IPR001761 Periplasmic binding protein/LacI sugar binding domain Eco28_RS08285 IPR028082 Periplasmic binding protein-like I Eco28_RS08285 IPR000843 LacI-type HTH domain Eco28_RS08290 IPR013189 Glycosyl hydrolase family 32, C-terminal Eco28_RS08290 IPR013148 Glycosyl hydrolase family 32, N-terminal Eco28_RS08290 IPR001362 Glycoside hydrolase, family 32 Eco28_RS08290 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily Eco28_RS08290 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily Eco28_RS08290 IPR006232 Sucrose-6-phosphate hydrolase Eco28_RS08290 IPR018053 Glycoside hydrolase, family 32, active site Eco28_RS08295 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS08295 IPR011611 Carbohydrate kinase PfkB Eco28_RS08295 IPR002139 Ribokinase/fructokinase Eco28_RS08295 IPR029056 Ribokinase-like Eco28_RS08300 IPR018457 LacY/RafB permease family, conserved site Eco28_RS08300 IPR000576 LacY/RafB permease family Eco28_RS08300 IPR020846 Major facilitator superfamily domain Eco28_RS08300 IPR036259 MFS transporter superfamily Eco28_RS08315 IPR023271 Aquaporin-like Eco28_RS08315 IPR000292 Formate/nitrite transporter Eco28_RS08325 IPR007428 MlaA lipoprotein Eco28_RS08335 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) Eco28_RS08335 IPR042117 OMPP1/FadL/TodX superfamily Eco28_RS08345 IPR035571 UPF0234-like, C-terminal Eco28_RS08345 IPR005272 Conserved hypothetical protein CHP00743 Eco28_RS08350 IPR020616 Thiolase, N-terminal Eco28_RS08350 IPR020617 Thiolase, C-terminal Eco28_RS08350 IPR016039 Thiolase-like Eco28_RS08350 IPR020610 Thiolase, active site Eco28_RS08350 IPR020615 Thiolase, acyl-enzyme intermediate active site Eco28_RS08350 IPR002155 Thiolase Eco28_RS08350 IPR020613 Thiolase, conserved site Eco28_RS08350 IPR012806 Acetyl-CoA C-acyltransferase FadI Eco28_RS08355 IPR001753 Enoyl-CoA hydratase/isomerase Eco28_RS08355 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site Eco28_RS08355 IPR036291 NAD(P)-binding domain superfamily Eco28_RS08355 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS08355 IPR012802 Fatty oxidation complex, alpha subunit FadJ Eco28_RS08355 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal Eco28_RS08355 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS08355 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding Eco28_RS08360 IPR029033 Histidine phosphatase superfamily Eco28_RS08360 IPR013078 Histidine phosphatase superfamily, clade-1 Eco28_RS08360 IPR004449 Phosphohistidine phosphatase SixA Eco28_RS08365 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS08365 IPR000259 Fimbrial-type adhesion domain Eco28_RS08365 IPR008966 Adhesion domain superfamily Eco28_RS08370 IPR037224 PapC, N-terminal domain superfamily Eco28_RS08370 IPR025885 PapC, N-terminal domain Eco28_RS08370 IPR000015 Outer membrane usher protein Eco28_RS08370 IPR025949 PapC-like, C-terminal domain Eco28_RS08370 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS08370 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS08375 IPR008962 PapD-like superfamily Eco28_RS08375 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS08375 IPR001829 Pili assembly chaperone, bacterial Eco28_RS08375 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS08375 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS08375 IPR013783 Immunoglobulin-like fold Eco28_RS08375 IPR018046 Pili assembly chaperone, conserved site Eco28_RS08380 IPR000259 Fimbrial-type adhesion domain Eco28_RS08380 IPR008966 Adhesion domain superfamily Eco28_RS08380 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS08385 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS08385 IPR000259 Fimbrial-type adhesion domain Eco28_RS08385 IPR008966 Adhesion domain superfamily Eco28_RS08390 IPR008966 Adhesion domain superfamily Eco28_RS08390 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS08390 IPR000259 Fimbrial-type adhesion domain Eco28_RS08395 IPR021407 Protein of unknown function DUF2544 Eco28_RS08400 IPR022990 Uncharacterised protein family UPF0115 Eco28_RS08400 IPR036063 Smr domain superfamily Eco28_RS08400 IPR002625 Smr domain Eco28_RS08405 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS08405 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase Eco28_RS08405 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS08405 IPR004556 Methyltransferase HemK-like Eco28_RS08405 IPR007848 Methyltransferase small domain Eco28_RS08410 IPR000453 Chorismate synthase Eco28_RS08410 IPR035904 Chorismate synthase AroC superfamily Eco28_RS08410 IPR020541 Chorismate synthase, conserved site Eco28_RS08415 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Eco28_RS08415 IPR005073 Peptidase M74, penicillin-insensitive murein endopeptidase Eco28_RS08420 IPR002781 Transmembrane protein TauE-like Eco28_RS08425 IPR007411 Elongation factor P hydroxylase Eco28_RS08430 IPR014987 Uncharacterised protein family YfcL Eco28_RS08435 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS08435 IPR006076 FAD dependent oxidoreductase Eco28_RS08435 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal Eco28_RS08435 IPR008471 MnmC-like methyltransferase Eco28_RS08435 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC Eco28_RS08440 IPR000794 Beta-ketoacyl synthase Eco28_RS08440 IPR014030 Beta-ketoacyl synthase, N-terminal Eco28_RS08440 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Eco28_RS08440 IPR016039 Thiolase-like Eco28_RS08440 IPR018201 Beta-ketoacyl synthase, active site Eco28_RS08440 IPR014031 Beta-ketoacyl synthase, C-terminal Eco28_RS08450 IPR011701 Major facilitator superfamily Eco28_RS08450 IPR020846 Major facilitator superfamily domain Eco28_RS08450 IPR037541 Uncharacterized MFS-type transporter YfcJ Eco28_RS08450 IPR036259 MFS transporter superfamily Eco28_RS08455 IPR023597 Flagellar regulator Flk Eco28_RS08460 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS08460 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Eco28_RS08460 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Eco28_RS08460 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Eco28_RS08460 IPR020921 Erythronate-4-phosphate dehydrogenase Eco28_RS08460 IPR038251 PdxB, dimerisation domain superfamily Eco28_RS08460 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain Eco28_RS08460 IPR036291 NAD(P)-binding domain superfamily Eco28_RS08465 IPR000534 Semialdehyde dehydrogenase, NAD-binding Eco28_RS08465 IPR012280 Semialdehyde dehydrogenase, dimerisation domain Eco28_RS08465 IPR036291 NAD(P)-binding domain superfamily Eco28_RS08470 IPR020095 Pseudouridine synthase I, TruA, C-terminal Eco28_RS08470 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain Eco28_RS08470 IPR001406 Pseudouridine synthase I, TruA Eco28_RS08470 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS08475 IPR032818 DedA family Eco28_RS08475 IPR032816 SNARE associated Golgi protein Eco28_RS08480 IPR034733 Acetyl-CoA carboxylase Eco28_RS08480 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit Eco28_RS08480 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS08480 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal Eco28_RS08480 IPR041010 Acetyl-coA carboxylase zinc finger domain Eco28_RS08485 IPR018109 Folylpolyglutamate synthetase, conserved site Eco28_RS08485 IPR036565 Mur-like, catalytic domain superfamily Eco28_RS08485 IPR004101 Mur ligase, C-terminal Eco28_RS08485 IPR001645 Folylpolyglutamate synthetase Eco28_RS08485 IPR036615 Mur ligase, C-terminal domain superfamily Eco28_RS08485 IPR013221 Mur ligase, central Eco28_RS08490 IPR032898 Cell division protein DedD Eco28_RS08490 IPR007730 Sporulation-like domain Eco28_RS08490 IPR036680 Sporulation-like domain superfamily Eco28_RS08495 IPR003825 Colicin V production, CvpA Eco28_RS08500 IPR029055 Nucleophile aminohydrolases, N-terminal Eco28_RS08500 IPR035584 Amidophosphoribosyltransferase, N-terminal Eco28_RS08500 IPR005854 Amidophosphoribosyltransferase Eco28_RS08500 IPR029057 Phosphoribosyltransferase-like Eco28_RS08500 IPR000836 Phosphoribosyltransferase domain Eco28_RS08500 IPR017932 Glutamine amidotransferase type 2 domain Eco28_RS08505 IPR004507 Flavin prenyltransferase UbiX-like Eco28_RS08505 IPR003382 Flavoprotein Eco28_RS08505 IPR036551 Flavin prenyltransferase-like Eco28_RS08510 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS08510 IPR018313 Solute-binding protein family 3, conserved site Eco28_RS08510 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter Eco28_RS08515 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS08515 IPR018313 Solute-binding protein family 3, conserved site Eco28_RS08515 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter Eco28_RS08520 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS08520 IPR030199 Histidine transport system permease protein HisQ Eco28_RS08520 IPR035906 MetI-like superfamily Eco28_RS08520 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS08525 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS08525 IPR035906 MetI-like superfamily Eco28_RS08525 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS08530 IPR003593 AAA+ ATPase domain Eco28_RS08530 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS08530 IPR017871 ABC transporter, conserved site Eco28_RS08530 IPR003439 ABC transporter-like Eco28_RS08530 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type Eco28_RS08535 IPR006842 Transposase (putative), YhgA-like Eco28_RS08535 IPR010106 Recombination-promoting nuclease RpnA Eco28_RS08540 IPR010099 Epimerase family protein SDR39U1 Eco28_RS08540 IPR036291 NAD(P)-binding domain superfamily Eco28_RS08540 IPR013549 Domain of unknown function DUF1731 Eco28_RS08540 IPR001509 NAD-dependent epimerase/dehydratase Eco28_RS08545 IPR006157 Dihydroneopterin aldolase/epimerase domain Eco28_RS08550 IPR004045 Glutathione S-transferase, N-terminal Eco28_RS08550 IPR004046 Glutathione S-transferase, C-terminal Eco28_RS08550 IPR036249 Thioredoxin-like superfamily Eco28_RS08550 IPR010987 Glutathione S-transferase, C-terminal-like Eco28_RS08550 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Eco28_RS08555 IPR036249 Thioredoxin-like superfamily Eco28_RS08555 IPR004045 Glutathione S-transferase, N-terminal Eco28_RS08555 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Eco28_RS08555 IPR010987 Glutathione S-transferase, C-terminal-like Eco28_RS08555 IPR040079 Glutathione Transferase family Eco28_RS08555 IPR034338 Glutathione S-transferases, subfamily 4, C-terminal Eco28_RS08560 IPR029052 Metallo-dependent phosphatase-like Eco28_RS08560 IPR020935 Phosphodiesterase YfcE, conserved site Eco28_RS08560 IPR041802 YfcE-like, metallophosphatase domain Eco28_RS08560 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type Eco28_RS08560 IPR000979 Phosphodiesterase MJ0936/Vps29 Eco28_RS08565 IPR000086 NUDIX hydrolase domain Eco28_RS08565 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS08565 IPR024195 NUDIX hydrolase, YfcD, predicted Eco28_RS08570 IPR018385 C4-dicarboxylate anaerobic carrier-like Eco28_RS08575 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS08575 IPR016475 Phosphate acetyltransferase, bacteria Eco28_RS08575 IPR042113 Phosphate acetyltransferase, domain 1 Eco28_RS08575 IPR042112 Phosphate acetyltransferase, domain 2 Eco28_RS08575 IPR010766 DRTGG Eco28_RS08575 IPR004614 Phosphate acetyltransferase Eco28_RS08575 IPR002505 Phosphate acetyl/butaryl transferase Eco28_RS08575 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Eco28_RS08580 IPR023865 Aliphatic acid kinase, short-chain, conserved site Eco28_RS08580 IPR000890 Aliphatic acid kinase, short-chain Eco28_RS08580 IPR004372 Acetate/propionate kinase Eco28_RS08585 IPR007334 Uncharacterised protein family UPF0208 Eco28_RS08590 IPR023145 YfbU, helix-hairpin domain superfamily Eco28_RS08590 IPR023146 YfbU, alpha-helical bundle domain superfamily Eco28_RS08590 IPR005587 Uncharacterised protein family UPF0304, YfbU Eco28_RS08595 IPR023214 HAD superfamily Eco28_RS08595 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Eco28_RS08595 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS08595 IPR036412 HAD-like superfamily Eco28_RS08595 IPR006439 HAD hydrolase, subfamily IA Eco28_RS08600 IPR006037 Regulator of K+ conductance, C-terminal Eco28_RS08600 IPR031312 Sodium/sulphate symporter, conserved site Eco28_RS08600 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Eco28_RS08600 IPR004680 Citrate transporter-like domain Eco28_RS08605 IPR039356 Metal-dependent nucleoside 5'-monophosphatase Eco28_RS08605 IPR022971 5'-deoxynucleotidase YfbR Eco28_RS08605 IPR003607 HD/PDEase domain Eco28_RS08610 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS08610 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS08610 IPR004839 Aminotransferase, class I/classII Eco28_RS08610 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS08620 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS08620 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS08620 IPR000847 Transcription regulator HTH, LysR Eco28_RS08620 IPR005119 LysR, substrate-binding Eco28_RS08625 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 Eco28_RS08625 IPR038430 NADH:ubiquinone oxidoreductase, subunit 3 superfamily Eco28_RS08625 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid Eco28_RS08630 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit Eco28_RS08630 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Eco28_RS08635 IPR029014 [NiFe]-hydrogenase, large subunit Eco28_RS08635 IPR010218 NADH dehydrogenase, subunit C Eco28_RS08635 IPR023062 NADH dehydrogenase, subunit CD Eco28_RS08635 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Eco28_RS08635 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Eco28_RS08635 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit Eco28_RS08635 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site Eco28_RS08635 IPR020396 NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site Eco28_RS08635 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H Eco28_RS08635 IPR001135 NADH-quinone oxidoreductase, subunit D Eco28_RS08640 IPR036249 Thioredoxin-like superfamily Eco28_RS08640 IPR042128 NuoE domain Eco28_RS08640 IPR041921 NADH-quinone oxidoreductase subunit E, N-terminal Eco28_RS08640 IPR002023 NADH-quinone oxidoreductase subunit E-like Eco28_RS08645 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Eco28_RS08645 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Eco28_RS08645 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain Eco28_RS08645 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Eco28_RS08645 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site Eco28_RS08645 IPR019554 Soluble ligand binding domain Eco28_RS08645 IPR011537 NADH ubiquinone oxidoreductase, F subunit Eco28_RS08650 IPR010228 NADH:ubiquinone oxidoreductase, subunit G Eco28_RS08650 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site Eco28_RS08650 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS08650 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS08650 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS08650 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS08650 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS08650 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding Eco28_RS08650 IPR006656 Molybdopterin oxidoreductase Eco28_RS08655 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H Eco28_RS08655 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site Eco28_RS08660 IPR010226 NADH-quinone oxidoreductase, chain I Eco28_RS08660 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS08660 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS08665 IPR042106 NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ Eco28_RS08665 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 Eco28_RS08670 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K Eco28_RS08670 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Eco28_RS08675 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Eco28_RS08675 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup Eco28_RS08675 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 Eco28_RS08675 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal Eco28_RS08680 IPR003918 NADH:ubiquinone oxidoreductase Eco28_RS08680 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Eco28_RS08680 IPR010227 NADH-quinone oxidoreductase, chain M/4 Eco28_RS08685 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 Eco28_RS08685 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Eco28_RS08705 IPR035944 YfbM-like super family Eco28_RS08705 IPR015068 Protein of unknown function DUF1877 Eco28_RS08720 IPR007484 Peptidase M28 Eco28_RS08730 IPR003653 Ulp1 protease family, C-terminal catalytic domain Eco28_RS08730 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS08735 IPR013471 Ribonuclease Z/BN Eco28_RS08735 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Eco28_RS08735 IPR013469 Ribonuclease BN Eco28_RS08735 IPR001279 Metallo-beta-lactamase Eco28_RS08740 IPR000182 GNAT domain Eco28_RS08740 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS08745 IPR010279 Inner membrane protein YqjD/ElaB Eco28_RS08750 IPR005801 ADC synthase Eco28_RS08750 IPR015890 Chorismate-utilising enzyme, C-terminal Eco28_RS08750 IPR004561 Isochorismate synthase Eco28_RS08750 IPR034681 Isochorismate synthase MenF Eco28_RS08755 IPR029061 Thiamin diphosphate-binding fold Eco28_RS08755 IPR032264 Menaquinone biosynthesis protein MenD, middle domain Eco28_RS08755 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Eco28_RS08755 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Eco28_RS08755 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Eco28_RS08760 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase Eco28_RS08760 IPR000073 Alpha/beta hydrolase fold-1 Eco28_RS08760 IPR029058 Alpha/Beta hydrolase fold Eco28_RS08765 IPR001753 Enoyl-CoA hydratase/isomerase Eco28_RS08765 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS08765 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB Eco28_RS08765 IPR014748 Enoyl-CoA hydratase, C-terminal Eco28_RS08765 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site Eco28_RS08770 IPR010196 o-Succinylbenzoate synthase, MenC type1 Eco28_RS08770 IPR036849 Enolase-like, C-terminal domain superfamily Eco28_RS08770 IPR029065 Enolase C-terminal domain-like Eco28_RS08770 IPR029017 Enolase-like, N-terminal Eco28_RS08770 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Eco28_RS08775 IPR010192 2-succinylbenzoate--CoA ligase Eco28_RS08775 IPR020845 AMP-binding, conserved site Eco28_RS08775 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS08775 IPR000873 AMP-dependent synthetase/ligase Eco28_RS08775 IPR025110 AMP-binding enzyme, C-terminal domain Eco28_RS08780 IPR038679 Signal transduction protein PmrD superfamily Eco28_RS08785 IPR000390 Small multidrug resistance protein family Eco28_RS08785 IPR022832 Probable 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF Eco28_RS08790 IPR022883 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase, subunit ArnE Eco28_RS08790 IPR000620 EamA domain Eco28_RS08790 IPR000390 Small multidrug resistance protein family Eco28_RS08795 IPR022839 Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase Eco28_RS08795 IPR003342 Glycosyl transferase family 39/83 Eco28_RS08800 IPR002509 NodB homology domain Eco28_RS08800 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Eco28_RS08800 IPR023557 4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD, probable Eco28_RS08805 IPR005793 Formyl transferase, C-terminal Eco28_RS08805 IPR011034 Formyl transferase-like, C-terminal domain superfamily Eco28_RS08805 IPR036477 Formyl transferase, N-terminal domain superfamily Eco28_RS08805 IPR036291 NAD(P)-binding domain superfamily Eco28_RS08805 IPR002376 Formyl transferase, N-terminal Eco28_RS08805 IPR021168 Bifunctional polymyxin resistance protein, ArnA Eco28_RS08805 IPR001509 NAD-dependent epimerase/dehydratase Eco28_RS08810 IPR022857 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase Eco28_RS08810 IPR001173 Glycosyltransferase 2-like Eco28_RS08810 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS08815 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS08815 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS08815 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS08815 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Eco28_RS08815 IPR022850 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase, ArnB Eco28_RS08820 IPR011310 Lipopolysaccharide core heptose(II)-phosphate phosphatase Eco28_RS08820 IPR029033 Histidine phosphatase superfamily Eco28_RS08820 IPR013078 Histidine phosphatase superfamily, clade-1 Eco28_RS08825 IPR020476 NUDIX hydrolase Eco28_RS08825 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS08825 IPR000086 NUDIX hydrolase domain Eco28_RS08825 IPR020084 NUDIX hydrolase, conserved site Eco28_RS08825 IPR023781 Nucleoside triphosphatase NudI Eco28_RS08830 IPR009998 YfaZ Eco28_RS08830 IPR023614 Porin domain superfamily Eco28_RS08830 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS08835 IPR008135 Competence-induced protein CinA Eco28_RS08835 IPR036425 MoaB/Mog-like domain superfamily Eco28_RS08835 IPR001453 MoaB/Mog domain Eco28_RS08835 IPR036653 CinA-like, C-terminal Eco28_RS08840 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS08840 IPR005471 Transcription regulator IclR, N-terminal Eco28_RS08840 IPR029016 GAF-like domain superfamily Eco28_RS08840 IPR014757 Transcription regulator IclR, C-terminal Eco28_RS08840 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS08845 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site Eco28_RS08845 IPR023444 L-rhamnonate dehydratase Eco28_RS08845 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Eco28_RS08845 IPR029065 Enolase C-terminal domain-like Eco28_RS08845 IPR029017 Enolase-like, N-terminal Eco28_RS08845 IPR036849 Enolase-like, C-terminal domain superfamily Eco28_RS08845 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Eco28_RS08850 IPR011701 Major facilitator superfamily Eco28_RS08850 IPR036259 MFS transporter superfamily Eco28_RS08850 IPR020846 Major facilitator superfamily domain Eco28_RS08855 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS08855 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS08855 IPR023593 2-keto-3-deoxy-L-rhamnonate aldolase Eco28_RS08855 IPR005000 HpcH/HpaI aldolase/citrate lyase domain Eco28_RS08865 IPR010106 Recombination-promoting nuclease RpnA Eco28_RS08865 IPR006842 Transposase (putative), YhgA-like Eco28_RS08870 IPR004017 Cysteine-rich domain Eco28_RS08870 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS08870 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS08870 IPR017753 Glycerol-3-phosphate dehydrogenase, GlpC subunit Eco28_RS08870 IPR009051 Alpha-helical ferredoxin Eco28_RS08875 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Eco28_RS08875 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS08875 IPR009158 Glycerol-3-phosphate dehydrogenase, GlpB subunit Eco28_RS08880 IPR017752 Glycerol-3-phosphate dehydrogenase, GlpA subunit Eco28_RS08880 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase Eco28_RS08880 IPR006076 FAD dependent oxidoreductase Eco28_RS08880 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily Eco28_RS08880 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS08880 IPR007419 BFD-like [2Fe-2S]-binding domain Eco28_RS08885 IPR036259 MFS transporter superfamily Eco28_RS08885 IPR020846 Major facilitator superfamily domain Eco28_RS08885 IPR011701 Major facilitator superfamily Eco28_RS08885 IPR005267 Glycerol-3-phosphate transporter Eco28_RS08885 IPR021159 Glycerate/sugar phosphate transporter, conserved site Eco28_RS08885 IPR000849 Sugar phosphate transporter Eco28_RS08890 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily Eco28_RS08890 IPR030395 Glycerophosphodiester phosphodiesterase domain Eco28_RS08895 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS08895 IPR005119 LysR, substrate-binding Eco28_RS08895 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS08895 IPR000847 Transcription regulator HTH, LysR Eco28_RS08905 IPR036259 MFS transporter superfamily Eco28_RS08905 IPR011701 Major facilitator superfamily Eco28_RS08905 IPR020846 Major facilitator superfamily domain Eco28_RS08910 IPR011009 Protein kinase-like domain superfamily Eco28_RS08910 IPR027023 Putative lipopolysaccharide kinase InaA Eco28_RS08915 IPR012675 Beta-grasp domain superfamily Eco28_RS08915 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS08915 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS08915 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Eco28_RS08920 IPR012348 Ribonucleotide reductase-like Eco28_RS08920 IPR000358 Ribonucleotide reductase small subunit family Eco28_RS08920 IPR009078 Ferritin-like superfamily Eco28_RS08920 IPR030475 Ribonucleotide reductase small subunit, acitve site Eco28_RS08920 IPR033909 Ribonucleotide reductase small subunit Eco28_RS08925 IPR013346 Ribonucleotide reductase, class I , alpha subunit Eco28_RS08925 IPR005144 ATP-cone domain Eco28_RS08925 IPR000788 Ribonucleotide reductase large subunit, C-terminal Eco28_RS08925 IPR013509 Ribonucleotide reductase large subunit, N-terminal Eco28_RS08925 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal Eco28_RS08925 IPR039718 Ribonucleoside-diphosphate reductase large subunit Eco28_RS08935 IPR011050 Pectin lyase fold/virulence factor Eco28_RS08935 IPR036709 Autotransporter beta-domain superfamily Eco28_RS08935 IPR005546 Autotransporter beta-domain Eco28_RS08935 IPR006315 Outer membrane autotransporter barrel Eco28_RS08935 IPR013425 Autotransporter-associated beta strand repeat Eco28_RS08935 IPR012332 P22 tailspike-like, C-terminal domain superfamily Eco28_RS08935 IPR003368 Polymorphic outer membrane protein repeat Eco28_RS08940 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS08940 IPR010233 Ubiquinone biosynthesis O-methyltransferase Eco28_RS08945 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily Eco28_RS08945 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta Eco28_RS08945 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal Eco28_RS08945 IPR013760 DNA topoisomerase, type IIA-like domain superfamily Eco28_RS08945 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Eco28_RS08945 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat Eco28_RS08945 IPR005743 DNA gyrase, subunit A Eco28_RS08950 IPR018671 Protein of unknown function DUF2138 Eco28_RS08955 IPR009558 Protein of unknown function DUF1175 Eco28_RS08960 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Eco28_RS08960 IPR002890 Macroglobulin domain Eco28_RS08960 IPR001599 Alpha-2-macroglobulin Eco28_RS08960 IPR011625 Alpha-2-macroglobulin, bait region domain Eco28_RS08965 IPR018748 Domain of unknown function DUF2300, secreted Eco28_RS08965 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS08965 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal Eco28_RS08970 IPR019220 Domain of unknown function DUF2135 Eco28_RS08970 IPR012039 Uncharacterised conserved protein UCP012281 Eco28_RS08980 IPR006161 Conserved hypothetical protein CHP00336 Eco28_RS08980 IPR006160 Short chain fatty acid transporter AtoE Eco28_RS08985 IPR004164 Coenzyme A transferase active site Eco28_RS08985 IPR004165 Coenzyme A transferase family I Eco28_RS08985 IPR012791 3-oxoacid CoA-transferase, subunit B Eco28_RS08985 IPR037171 NagB/RpiA transferase-like Eco28_RS08990 IPR004165 Coenzyme A transferase family I Eco28_RS08990 IPR012792 3-oxoacid CoA-transferase, subunit A Eco28_RS08990 IPR004163 Coenzyme A transferase binding site Eco28_RS08990 IPR037171 NagB/RpiA transferase-like Eco28_RS08995 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS08995 IPR009057 Homeobox-like domain superfamily Eco28_RS08995 IPR011006 CheY-like superfamily Eco28_RS08995 IPR002197 DNA binding HTH domain, Fis-type Eco28_RS08995 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS08995 IPR003593 AAA+ ATPase domain Eco28_RS08995 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS08995 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS08995 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS08995 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS09000 IPR003660 HAMP domain Eco28_RS09000 IPR005467 Histidine kinase domain Eco28_RS09000 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS09000 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS09000 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS09000 IPR000700 PAS-associated, C-terminal Eco28_RS09000 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS09000 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS09000 IPR000014 PAS domain Eco28_RS09000 IPR035965 PAS domain superfamily Eco28_RS09000 IPR013767 PAS fold Eco28_RS09005 IPR011006 CheY-like superfamily Eco28_RS09005 IPR005467 Histidine kinase domain Eco28_RS09005 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS09005 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS09005 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS09005 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS09005 IPR019017 Signal transduction histidine kinase RcsC, alpha-beta loop, C-terminal Eco28_RS09005 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS09005 IPR030856 Sensor histidine kinase RcsC Eco28_RS09005 IPR038388 RcsC, C-terminal domain superfamily Eco28_RS09005 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS09010 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS09010 IPR030864 Transcriptional regulatory protein RcsB Eco28_RS09010 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS09010 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS09010 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS09010 IPR011006 CheY-like superfamily Eco28_RS09015 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Eco28_RS09015 IPR038616 Phosphotransferase RcsD, RcsD-ABL domain superfamily Eco28_RS09015 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS09015 IPR036641 HPT domain superfamily Eco28_RS09015 IPR030861 Phosphotransferase RcsD Eco28_RS09015 IPR032306 Phosphotransferase RcsD, RcsD-ABL domain Eco28_RS09015 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS09015 IPR005467 Histidine kinase domain Eco28_RS09030 IPR013793 Porin, Gram-negative type, conserved site Eco28_RS09030 IPR001702 Porin, Gram-negative type Eco28_RS09030 IPR001897 Porin, gammaproteobacterial Eco28_RS09030 IPR023614 Porin domain superfamily Eco28_RS09035 IPR042159 Flavin-trafficking protein ApbE Eco28_RS09035 IPR003374 ApbE-like superfamily Eco28_RS09035 IPR024932 Flavin transferase ApbE Eco28_RS09040 IPR009057 Homeobox-like domain superfamily Eco28_RS09040 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS09040 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily Eco28_RS09040 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain Eco28_RS09040 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding Eco28_RS09040 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site Eco28_RS09040 IPR018062 HTH domain AraC-type, conserved site Eco28_RS09040 IPR035451 Ada-like domain superfamily Eco28_RS09040 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS09040 IPR004026 Ada DNA repair, metal-binding Eco28_RS09040 IPR016221 Bifunctional regulatory protein Ada Eco28_RS09040 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Eco28_RS09045 IPR005123 Oxoglutarate/iron-dependent dioxygenase Eco28_RS09045 IPR037151 Alpha-ketoglutarate-dependent dioxygenase AlkB-like superfamily Eco28_RS09045 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like Eco28_RS09045 IPR004574 Alkylated DNA repair protein AlkB Eco28_RS09050 IPR017871 ABC transporter, conserved site Eco28_RS09050 IPR003593 AAA+ ATPase domain Eco28_RS09050 IPR036640 ABC transporter type 1, transmembrane domain superfamily Eco28_RS09050 IPR003439 ABC transporter-like Eco28_RS09050 IPR005898 Cyclic peptide transporter Eco28_RS09050 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09050 IPR011527 ABC transporter type 1, transmembrane domain Eco28_RS09055 IPR006231 Malate:quinone-oxidoreductase Eco28_RS09055 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS09060 IPR027438 Ecotin, C-terminal Eco28_RS09060 IPR036198 Ecotin superfamily Eco28_RS09060 IPR005658 Proteinase inhibitor I11, ecotin Eco28_RS09060 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria Eco28_RS09070 IPR004496 Ferredoxin-type protein NapF Eco28_RS09070 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS09070 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS09075 IPR005623 Chaperone NapD, nitrate reductase assembly Eco28_RS09080 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site Eco28_RS09080 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS09080 IPR041957 Nitrate reductase NapA-like, molybdopterin-binding domain Eco28_RS09080 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS09080 IPR006656 Molybdopterin oxidoreductase Eco28_RS09080 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS09080 IPR010051 Periplasmic nitrate reductase, large subunit Eco28_RS09080 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS09080 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS09085 IPR004494 MauM/NapG ferredoxin-type protein Eco28_RS09085 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS09085 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS09085 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS09090 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS09090 IPR011886 Ferredoxin-type protein, NapH/MauN family Eco28_RS09090 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS09095 IPR005591 Nitrate reductase cytochrome c-type subunit NapB Eco28_RS09095 IPR036280 Multiheme cytochrome superfamily Eco28_RS09095 IPR011031 Multihaem cytochrome Eco28_RS09100 IPR011885 Periplasmic nitrate reductase c-type cytochrome, NapC/NirT Eco28_RS09100 IPR038266 NapC/NirT cytochrome c superfamily Eco28_RS09100 IPR036280 Multiheme cytochrome superfamily Eco28_RS09100 IPR024717 Denitrification system component NapC/NirT/NrfH Eco28_RS09100 IPR011031 Multihaem cytochrome Eco28_RS09100 IPR005126 NapC/NirT cytochrome c, N-terminal Eco28_RS09105 IPR017871 ABC transporter, conserved site Eco28_RS09105 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09105 IPR005895 ABC transporter, haem export, CcmA Eco28_RS09105 IPR003439 ABC transporter-like Eco28_RS09105 IPR003593 AAA+ ATPase domain Eco28_RS09110 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria Eco28_RS09110 IPR003544 Cytochrome c-type biogenesis protein CcmB Eco28_RS09115 IPR003557 Cytochrome c-type biogenesis protein CcmC Eco28_RS09115 IPR002541 Cytochrome c assembly protein Eco28_RS09120 IPR007078 Haem exporter protein D (CcmD) Eco28_RS09125 IPR004329 CcmE/CycJ protein Eco28_RS09125 IPR036127 CcmE-like superfamily Eco28_RS09130 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal Eco28_RS09130 IPR002541 Cytochrome c assembly protein Eco28_RS09130 IPR003567 Cytochrome c-type biogenesis protein Eco28_RS09130 IPR003568 Cytochrome c-type biogenesis protein CcmF Eco28_RS09135 IPR013766 Thioredoxin domain Eco28_RS09135 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE Eco28_RS09135 IPR013740 Redoxin Eco28_RS09135 IPR017937 Thioredoxin, conserved site Eco28_RS09135 IPR036249 Thioredoxin-like superfamily Eco28_RS09140 IPR019734 Tetratricopeptide repeat Eco28_RS09140 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS09140 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS09140 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily Eco28_RS09140 IPR005616 CcmH/CycL/Ccl2/NrfF family Eco28_RS09145 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS09145 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS09145 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS09145 IPR011006 CheY-like superfamily Eco28_RS09155 IPR006315 Outer membrane autotransporter barrel Eco28_RS09155 IPR030930 Adhesin of bacterial autotransporter system Eco28_RS09155 IPR036709 Autotransporter beta-domain superfamily Eco28_RS09155 IPR005546 Autotransporter beta-domain Eco28_RS09155 IPR003991 Pertactin virulence factor family Eco28_RS09155 IPR004899 Pertactin, central region Eco28_RS09155 IPR011050 Pectin lyase fold/virulence factor Eco28_RS09155 IPR012332 P22 tailspike-like, C-terminal domain superfamily Eco28_RS09165 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS09165 IPR000917 Sulfatase, N-terminal Eco28_RS09165 IPR012159 Inner membrane protein YejM Eco28_RS09165 IPR024588 Inner membrane protein YejM, N-terminal Eco28_RS09170 IPR023202 YejL-like superfamily Eco28_RS09170 IPR009857 Uncharacterised protein family UPF0352 Eco28_RS09175 IPR007358 Nucleoid-associated protein NdpA Eco28_RS09180 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Eco28_RS09180 IPR020055 Ribosomal protein L25, short-form Eco28_RS09180 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily Eco28_RS09180 IPR029751 Ribosomal protein L25 Eco28_RS09185 IPR006935 Helicase/UvrB, N-terminal Eco28_RS09185 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS09185 IPR001650 Helicase, C-terminal Eco28_RS09185 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09185 IPR011332 Zinc-binding ribosomal protein Eco28_RS09195 IPR036986 RNA-binding S4 domain superfamily Eco28_RS09195 IPR002942 RNA-binding S4 domain Eco28_RS09195 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site Eco28_RS09195 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain Eco28_RS09195 IPR006145 Pseudouridine synthase, RsuA/RluA Eco28_RS09195 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS09195 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F Eco28_RS09200 IPR020846 Major facilitator superfamily domain Eco28_RS09200 IPR036259 MFS transporter superfamily Eco28_RS09200 IPR004734 Multidrug resistance protein Eco28_RS09200 IPR011701 Major facilitator superfamily Eco28_RS09200 IPR004812 Drug resistance transporter Bcr/CmlA subfamily Eco28_RS09210 IPR020489 Uncharacterised protein family YejG Eco28_RS09215 IPR003593 AAA+ ATPase domain Eco28_RS09215 IPR003439 ABC transporter-like Eco28_RS09215 IPR017871 ABC transporter, conserved site Eco28_RS09215 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Eco28_RS09215 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09220 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Eco28_RS09220 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS09220 IPR035906 MetI-like superfamily Eco28_RS09225 IPR035906 MetI-like superfamily Eco28_RS09225 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS09230 IPR030678 Peptide/nickel binding protein, MppA-type Eco28_RS09230 IPR039424 Solute-binding protein family 5 Eco28_RS09230 IPR000914 Solute-binding protein family 5 domain Eco28_RS09235 IPR035919 EAL domain superfamily Eco28_RS09235 IPR001633 EAL domain Eco28_RS09235 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Eco28_RS09240 IPR000064 Endopeptidase, NLPC/P60 domain Eco28_RS09240 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS09245 IPR032908 Lipid A 1-diphosphate synthase Eco28_RS09245 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Eco28_RS09245 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Eco28_RS09250 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09250 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Eco28_RS09250 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Eco28_RS09255 IPR036291 NAD(P)-binding domain superfamily Eco28_RS09255 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS09255 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS09255 IPR000669 Mannitol dehydrogenase Eco28_RS09255 IPR013131 Mannitol dehydrogenase, N-terminal Eco28_RS09255 IPR023027 Mannitol dehydrogenase, conserved site Eco28_RS09255 IPR013118 Mannitol dehydrogenase, C-terminal Eco28_RS09260 IPR013185 Translation elongation factor, KOW-like Eco28_RS09260 IPR014722 Ribosomal protein L2, domain 2 Eco28_RS09260 IPR013852 Translation elongation factor P/YeiP, conserved site Eco28_RS09260 IPR008991 Translation protein SH3-like domain superfamily Eco28_RS09260 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS09260 IPR001059 Translation elongation factor P/YeiP, central Eco28_RS09260 IPR020599 Translation elongation factor P/YeiP Eco28_RS09260 IPR011897 Translation elongation factor P-like, YeiP Eco28_RS09260 IPR015365 Elongation factor P, C-terminal Eco28_RS09265 IPR005358 Putative zinc- or iron-chelating domain containing protein Eco28_RS09270 IPR036259 MFS transporter superfamily Eco28_RS09270 IPR004750 Sugar efflux Eco28_RS09270 IPR020846 Major facilitator superfamily domain Eco28_RS09270 IPR011701 Major facilitator superfamily Eco28_RS09275 IPR035895 HPr-like superfamily Eco28_RS09275 IPR000032 Phosphocarrier protein HPr-like Eco28_RS09275 IPR002178 PTS EIIA type-2 domain Eco28_RS09275 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Eco28_RS09275 IPR002114 Phosphotransferase system, HPr serine phosphorylation site Eco28_RS09275 IPR016152 Phosphotransferase/anion transporter Eco28_RS09280 IPR017583 Tagatose/fructose phosphokinase Eco28_RS09280 IPR029056 Ribokinase-like Eco28_RS09280 IPR011611 Carbohydrate kinase PfkB Eco28_RS09280 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS09280 IPR022463 Fructose 1-phosphate kinase Eco28_RS09285 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS09285 IPR013011 Phosphotransferase system, EIIB component, type 2 Eco28_RS09285 IPR036095 PTS system IIB component-like superfamily Eco28_RS09285 IPR013014 Phosphotransferase system, EIIC component, type 2 Eco28_RS09285 IPR003353 Phosphotransferase system, fructose-specific IIB subunit Eco28_RS09285 IPR006327 Phosphotransferase system, fructose IIC component Eco28_RS09285 IPR003352 Phosphotransferase system, EIIC Eco28_RS09290 IPR029056 Ribokinase-like Eco28_RS09290 IPR011611 Carbohydrate kinase PfkB Eco28_RS09290 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS09295 IPR007342 Pseudouridine-5'-phosphate glycosidase Eco28_RS09295 IPR022830 Indigoidine synthase A-like Eco28_RS09300 IPR008276 Concentrative nucleoside transporter Eco28_RS09300 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial Eco28_RS09300 IPR011657 Concentrative nucleoside transporter C-terminal domain Eco28_RS09300 IPR002668 Concentrative nucleoside transporter N-terminal domain Eco28_RS09305 IPR000595 Cyclic nucleotide-binding domain Eco28_RS09305 IPR012318 Crp-type HTH domain Eco28_RS09305 IPR018490 Cyclic nucleotide-binding-like Eco28_RS09310 IPR022977 Pyrimidine-specific ribonucleoside hydrolase RihB Eco28_RS09310 IPR036452 Ribonucleoside hydrolase-like Eco28_RS09310 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site Eco28_RS09310 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Eco28_RS09310 IPR023186 Inosine/uridine-preferring nucleoside hydrolase Eco28_RS09315 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial Eco28_RS09315 IPR008276 Concentrative nucleoside transporter Eco28_RS09315 IPR002668 Concentrative nucleoside transporter N-terminal domain Eco28_RS09315 IPR011657 Concentrative nucleoside transporter C-terminal domain Eco28_RS09320 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS09320 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS09320 IPR029056 Ribokinase-like Eco28_RS09320 IPR011611 Carbohydrate kinase PfkB Eco28_RS09320 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS09325 IPR018246 AP endonuclease 2, zinc binding site Eco28_RS09325 IPR001719 AP endonuclease 2 Eco28_RS09325 IPR036237 Xylose isomerase-like superfamily Eco28_RS09325 IPR013022 Xylose isomerase-like, TIM barrel domain Eco28_RS09330 IPR018383 Uncharacterised protein family UPF0324, prokaryote Eco28_RS09330 IPR004630 Uncharacterised protein family UPF0324, bacteria Eco28_RS09335 IPR005119 LysR, substrate-binding Eco28_RS09335 IPR000847 Transcription regulator HTH, LysR Eco28_RS09335 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS09335 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS09345 IPR004841 Amino acid permease/ SLC12A domain Eco28_RS09345 IPR004840 Amino acid permease, conserved site Eco28_RS09355 IPR012910 TonB-dependent receptor, plug domain Eco28_RS09355 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS09355 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS09355 IPR010916 TonB box, conserved site Eco28_RS09355 IPR039426 Vitamin B12 transporter BtuB-like Eco28_RS09355 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS09355 IPR010917 TonB-dependent receptor, conserved site Eco28_RS09360 IPR000801 Putative esterase Eco28_RS09360 IPR029058 Alpha/Beta hydrolase fold Eco28_RS09360 IPR014186 S-formylglutathione hydrolase Eco28_RS09375 IPR001474 GTP cyclohydrolase I Eco28_RS09375 IPR018234 GTP cyclohydrolase I, conserved site Eco28_RS09375 IPR020602 GTP cyclohydrolase I domain Eco28_RS09380 IPR007349 Domain of unknown function DUF418 Eco28_RS09390 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS09390 IPR028082 Periplasmic binding protein-like I Eco28_RS09390 IPR000843 LacI-type HTH domain Eco28_RS09395 IPR028082 Periplasmic binding protein-like I Eco28_RS09395 IPR025997 Periplasmic binding protein Eco28_RS09400 IPR015862 ABC transporter, galactose import, MglA Eco28_RS09400 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09400 IPR003593 AAA+ ATPase domain Eco28_RS09400 IPR017871 ABC transporter, conserved site Eco28_RS09400 IPR003439 ABC transporter-like Eco28_RS09405 IPR030158 Galactoside transport system permease protein MglC Eco28_RS09405 IPR001851 ABC transporter, permease Eco28_RS09410 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS09410 IPR013785 Aldolase-type TIM barrel Eco28_RS09410 IPR005720 Dihydroorotate dehydrogenase domain Eco28_RS09410 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS09415 IPR009051 Alpha-helical ferredoxin Eco28_RS09415 IPR023753 FAD/NAD(P)-binding domain Eco28_RS09415 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS09415 IPR028261 Dihydroprymidine dehydrogenase domain II Eco28_RS09420 IPR020155 Uncharacterised protein family YeiS Eco28_RS09425 IPR023604 Uncharacterised protein family SanA Eco28_RS09425 IPR003848 Domain of unknown function DUF218 Eco28_RS09430 IPR016192 APOBEC/CMP deaminase, zinc-binding Eco28_RS09430 IPR002125 Cytidine and deoxycytidylate deaminase domain Eco28_RS09430 IPR013171 Cytidine/deoxycytidylate deaminase, zinc-binding domain Eco28_RS09430 IPR006263 Cytidine deaminase, homodimeric Eco28_RS09430 IPR016193 Cytidine deaminase-like Eco28_RS09430 IPR020797 Cytidine deaminase, bacteria Eco28_RS09435 IPR005261 Conserved hypothetical protein CHP00659 Eco28_RS09435 IPR007300 CidB/LrgB family Eco28_RS09440 IPR022957 Uncharacterised protein family UPF0299 Eco28_RS09440 IPR005538 LrgA/CidA family Eco28_RS09445 IPR013785 Aldolase-type TIM barrel Eco28_RS09445 IPR035587 DUS-like, FMN-binding domain Eco28_RS09445 IPR032886 tRNA-dihydrouridine(16) synthase Eco28_RS09445 IPR042270 tRNA-dihydrouridine(16) synthase, C-terminal Eco28_RS09445 IPR001269 tRNA-dihydrouridine synthase Eco28_RS09445 IPR018517 tRNA-dihydrouridine synthase, conserved site Eco28_RS09465 IPR010131 RND efflux system, outer membrane lipoprotein, NodT Eco28_RS09465 IPR003423 Outer membrane efflux protein Eco28_RS09470 IPR036291 NAD(P)-binding domain superfamily Eco28_RS09470 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS09470 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS09475 IPR032816 SNARE associated Golgi protein Eco28_RS09480 IPR006977 Yip1 domain Eco28_RS09485 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS09485 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A Eco28_RS09485 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Eco28_RS09490 IPR006094 FAD linked oxidase, N-terminal Eco28_RS09490 IPR015409 D-lactate dehydrogenase, membrane binding, C-terminal Eco28_RS09490 IPR016164 FAD-linked oxidase-like, C-terminal Eco28_RS09490 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS09490 IPR016173 D-lactate dehydrogenase, C-terminal subdomain 2 Eco28_RS09490 IPR016172 D-lactate dehydrogenase, C-terminal subdomain 1 Eco28_RS09490 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS09490 IPR012256 D-lactate dehydrogenase Eco28_RS09490 IPR016166 FAD-binding domain, PCMH-type Eco28_RS09490 IPR016167 FAD-binding, type PCMH, subdomain 1 Eco28_RS09495 IPR001764 Glycoside hydrolase, family 3, N-terminal Eco28_RS09495 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily Eco28_RS09495 IPR017853 Glycoside hydrolase superfamily Eco28_RS09495 IPR026891 Fibronectin type III-like domain Eco28_RS09495 IPR013783 Immunoglobulin-like fold Eco28_RS09495 IPR019800 Glycoside hydrolase, family 3, active site Eco28_RS09495 IPR002772 Glycoside hydrolase family 3 C-terminal domain Eco28_RS09495 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily Eco28_RS09500 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain Eco28_RS09505 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS09505 IPR035906 MetI-like superfamily Eco28_RS09510 IPR003593 AAA+ ATPase domain Eco28_RS09510 IPR003439 ABC transporter-like Eco28_RS09510 IPR017871 ABC transporter, conserved site Eco28_RS09510 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09515 IPR035906 MetI-like superfamily Eco28_RS09515 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS09520 IPR020870 Uncharacterised protein family UPF0387, membrane Eco28_RS09525 IPR000551 MerR-type HTH domain Eco28_RS09525 IPR009061 Putative DNA-binding domain superfamily Eco28_RS09530 IPR003018 GAF domain Eco28_RS09530 IPR010559 Signal transduction histidine kinase, internal region Eco28_RS09530 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS09530 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region Eco28_RS09535 IPR011006 CheY-like superfamily Eco28_RS09535 IPR007492 LytTR DNA-binding domain Eco28_RS09535 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS09540 IPR009921 Domain of unknown function DUF1456 Eco28_RS09545 IPR036699 YehR-like superfamily Eco28_RS09545 IPR009736 Protein of unknown function DUF1307 Eco28_RS09550 IPR007527 Zinc finger, SWIM-type Eco28_RS09555 IPR036465 von Willebrand factor A-like domain superfamily Eco28_RS09555 IPR002035 von Willebrand factor, type A Eco28_RS09555 IPR008912 Uncharacterised protein family CoxE-like Eco28_RS09565 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09565 IPR011704 ATPase, dynein-related, AAA domain Eco28_RS09565 IPR003593 AAA+ ATPase domain Eco28_RS09585 IPR025406 Domain of unknown function DUF4132 Eco28_RS09595 IPR008893 WGR domain Eco28_RS09595 IPR036930 WGR domain superfamily Eco28_RS09600 IPR023458 Methionine-tRNA ligase, type 1 Eco28_RS09600 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal Eco28_RS09600 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS09600 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain Eco28_RS09600 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Eco28_RS09600 IPR015413 Methionyl/Leucyl tRNA synthetase Eco28_RS09600 IPR014758 Methionyl-tRNA synthetase Eco28_RS09600 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS09600 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Eco28_RS09600 IPR029038 Methionyl-tRNA synthetase, Zn-domain Eco28_RS09600 IPR033911 Methioninyl-tRNA synthetase core domain Eco28_RS09600 IPR002547 tRNA-binding domain Eco28_RS09605 IPR019591 Mrp/NBP35 ATP-binding protein Eco28_RS09605 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Eco28_RS09605 IPR034904 Fe-S cluster assembly domain superfamily Eco28_RS09605 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09605 IPR000808 Mrp, conserved site Eco28_RS09610 IPR020386 Uncharacterised protein family YehE Eco28_RS09620 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS09620 IPR000259 Fimbrial-type adhesion domain Eco28_RS09620 IPR008966 Adhesion domain superfamily Eco28_RS09625 IPR008962 PapD-like superfamily Eco28_RS09625 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS09625 IPR018046 Pili assembly chaperone, conserved site Eco28_RS09625 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS09625 IPR001829 Pili assembly chaperone, bacterial Eco28_RS09625 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS09625 IPR013783 Immunoglobulin-like fold Eco28_RS09630 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS09630 IPR025949 PapC-like, C-terminal domain Eco28_RS09630 IPR000015 Outer membrane usher protein Eco28_RS09630 IPR025885 PapC, N-terminal domain Eco28_RS09630 IPR037224 PapC, N-terminal domain superfamily Eco28_RS09630 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS09645 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS09645 IPR037224 PapC, N-terminal domain superfamily Eco28_RS09645 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS09645 IPR025949 PapC-like, C-terminal domain Eco28_RS09645 IPR000015 Outer membrane usher protein Eco28_RS09645 IPR025885 PapC, N-terminal domain Eco28_RS09650 IPR008966 Adhesion domain superfamily Eco28_RS09650 IPR016959 Uncharacterised conserved protein UCP030811 Eco28_RS09650 IPR000259 Fimbrial-type adhesion domain Eco28_RS09650 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS09655 IPR024572 Nickel/cobalt homeostasis protein RcnB Eco28_RS09660 IPR011541 Nickel/cobalt transporter, high-affinity Eco28_RS09665 IPR003735 Metal-sensitive transcriptional repressor Eco28_RS09665 IPR038390 Metal-sensitive transcriptional repressor superfamily Eco28_RS09670 IPR029056 Ribokinase-like Eco28_RS09670 IPR000417 Hydroxyethylthiazole kinase Eco28_RS09675 IPR029056 Ribokinase-like Eco28_RS09675 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Eco28_RS09675 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase Eco28_RS09680 IPR017853 Glycoside hydrolase superfamily Eco28_RS09680 IPR018077 Glycoside hydrolase, family 25 subgroup Eco28_RS09680 IPR002053 Glycoside hydrolase, family 25 Eco28_RS09680 IPR008270 Glycoside hydrolase, family 25, active site Eco28_RS09685 IPR000524 Transcription regulator HTH, GntR Eco28_RS09685 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Eco28_RS09685 IPR011663 UbiC transcription regulator-associated Eco28_RS09685 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS09685 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS09690 IPR011611 Carbohydrate kinase PfkB Eco28_RS09690 IPR002139 Ribokinase/fructokinase Eco28_RS09690 IPR029056 Ribokinase-like Eco28_RS09690 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS09695 IPR005502 ADP-ribosylation/Crystallin J1 Eco28_RS09695 IPR036705 ADP-ribosylation/Crystallin J1 superfamily Eco28_RS09700 IPR004740 Nucleoside:H+ symporter Eco28_RS09700 IPR036259 MFS transporter superfamily Eco28_RS09700 IPR020846 Major facilitator superfamily domain Eco28_RS09705 IPR013785 Aldolase-type TIM barrel Eco28_RS09705 IPR002915 DeoC/FbaB/ lacD aldolase Eco28_RS09705 IPR041720 Aldolase FbaB-like, archaeal-type Eco28_RS09710 IPR023955 D-tagatose-bisphosphate aldolase, class II, subunit GatY Eco28_RS09710 IPR011288 D-tagatose-bisphosphate aldolase, class II, subunit KbaY/GatY Eco28_RS09710 IPR000771 Fructose-bisphosphate aldolase, class-II Eco28_RS09710 IPR013785 Aldolase-type TIM barrel Eco28_RS09715 IPR023436 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit GatZ Eco28_RS09715 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ-like Eco28_RS09715 IPR013785 Aldolase-type TIM barrel Eco28_RS09725 IPR013785 Aldolase-type TIM barrel Eco28_RS09725 IPR023436 D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit GatZ Eco28_RS09725 IPR012062 D-tagatose-bisphosphate aldolase, non-catalytic subunit GatZ/KbaZ-like Eco28_RS09730 IPR002178 PTS EIIA type-2 domain Eco28_RS09730 IPR016152 Phosphotransferase/anion transporter Eco28_RS09735 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS09735 IPR013011 Phosphotransferase system, EIIB component, type 2 Eco28_RS09735 IPR036095 PTS system IIB component-like superfamily Eco28_RS09740 IPR013014 Phosphotransferase system, EIIC component, type 2 Eco28_RS09740 IPR013853 Galactitol permease IIC component Eco28_RS09740 IPR004703 Phosphotransferase system, sugar-specific permease component Eco28_RS09745 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS09745 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS09745 IPR036291 NAD(P)-binding domain superfamily Eco28_RS09745 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS09745 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS09745 IPR011032 GroES-like superfamily Eco28_RS09750 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS09750 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS09750 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS09750 IPR001034 DeoR-type HTH domain Eco28_RS09755 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal Eco28_RS09755 IPR022433 Lipid kinase YegS Eco28_RS09755 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Eco28_RS09755 IPR005218 Diacylglycerol/lipid kinase Eco28_RS09755 IPR001206 Diacylglycerol kinase, catalytic domain Eco28_RS09785 IPR007684 Zinc finger, Ogr/Delta-type Eco28_RS09790 IPR001539 Peptidase U32 Eco28_RS09790 IPR032525 Peptidase family U32, C-terminal Eco28_RS09795 IPR036913 YegP-like superfamily Eco28_RS09795 IPR010879 Domain of unknown function DUF1508 Eco28_RS09800 IPR011006 CheY-like superfamily Eco28_RS09800 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS09800 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS09800 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS09800 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS09800 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS09805 IPR003660 HAMP domain Eco28_RS09805 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS09805 IPR005467 Histidine kinase domain Eco28_RS09805 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS09805 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS09805 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS09805 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS09810 IPR004638 Drug resistance transporter EmrB-like Eco28_RS09810 IPR036259 MFS transporter superfamily Eco28_RS09810 IPR023721 Multidrug resistance protein MdtD Eco28_RS09810 IPR011701 Major facilitator superfamily Eco28_RS09810 IPR020846 Major facilitator superfamily domain Eco28_RS09815 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Eco28_RS09815 IPR001036 Acriflavin resistance protein Eco28_RS09815 IPR023931 Multidrug resistance protein MdtC Eco28_RS09820 IPR022831 Multidrug resistance protein MdtB Eco28_RS09820 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Eco28_RS09820 IPR001036 Acriflavin resistance protein Eco28_RS09825 IPR006143 RND efflux pump, membrane fusion protein Eco28_RS09825 IPR022824 Multidrug resistance protein MdtA Eco28_RS09825 IPR039562 Membrane fusion protein, biotin-lipoyl like domain Eco28_RS09830 IPR011392 Tellurite resistance, TerY Eco28_RS09830 IPR036465 von Willebrand factor A-like domain superfamily Eco28_RS09830 IPR002035 von Willebrand factor, type A Eco28_RS09835 IPR036457 PPM-type phosphatase domain superfamily Eco28_RS09840 IPR000719 Protein kinase domain Eco28_RS09840 IPR011009 Protein kinase-like domain superfamily Eco28_RS09840 IPR016960 Protein kinase YegI-like Eco28_RS09845 IPR018181 Heat shock protein 70, conserved site Eco28_RS09845 IPR013126 Heat shock protein 70 family Eco28_RS09845 IPR042054 YegD-like Eco28_RS09855 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Eco28_RS09855 IPR011257 DNA glycosylase Eco28_RS09855 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal Eco28_RS09855 IPR000035 Alkylbase DNA glycosidase, conserved site Eco28_RS09855 IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily Eco28_RS09855 IPR003265 HhH-GPD domain Eco28_RS09860 IPR029787 Nucleotide cyclase Eco28_RS09860 IPR001610 PAC motif Eco28_RS09860 IPR013655 PAS fold-3 Eco28_RS09860 IPR013656 PAS fold-4 Eco28_RS09860 IPR035965 PAS domain superfamily Eco28_RS09860 IPR000700 PAS-associated, C-terminal Eco28_RS09860 IPR000014 PAS domain Eco28_RS09860 IPR001633 EAL domain Eco28_RS09860 IPR035919 EAL domain superfamily Eco28_RS09860 IPR000160 GGDEF domain Eco28_RS09860 IPR007895 MASE1 Eco28_RS09865 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09865 IPR006083 Phosphoribulokinase/uridine kinase Eco28_RS09865 IPR026008 Uridine kinase Eco28_RS09865 IPR000764 Uridine kinase-like Eco28_RS09870 IPR011962 dCTP deaminase Eco28_RS09870 IPR029054 dUTPase-like Eco28_RS09870 IPR033704 dUTPase, trimeric Eco28_RS09870 IPR036157 dUTPase-like superfamily Eco28_RS09875 IPR007844 AsmA Eco28_RS09880 IPR005170 Transporter-associated domain Eco28_RS09880 IPR005496 Integral membrane protein TerC Eco28_RS09880 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS09880 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS09880 IPR000644 CBS domain Eco28_RS09885 IPR019554 Soluble ligand binding domain Eco28_RS09885 IPR003715 Polysaccharide export protein Eco28_RS09885 IPR040716 Outer-membrane lipoprotein Wza, C-terminal domain Eco28_RS09890 IPR023485 Phosphotyrosine protein phosphatase I Eco28_RS09890 IPR036196 Phosphotyrosine protein phosphatase I superfamily Eco28_RS09890 IPR017867 Protein-tyrosine phosphatase, low molecular weight Eco28_RS09895 IPR025669 AAA domain Eco28_RS09895 IPR005702 Exopolysaccharide synthesis protein Eco28_RS09895 IPR032807 Tyrosine kinase, G-rich domain Eco28_RS09895 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS09895 IPR003856 Polysaccharide chain length determinant N-terminal domain Eco28_RS09900 IPR024009 Colanic acid biosynthesis, glycosyl transferase, WcaA Eco28_RS09900 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS09900 IPR001173 Glycosyltransferase 2-like Eco28_RS09905 IPR024027 Colanic acid biosynthesis, acetyltransferase, WcaB Eco28_RS09905 IPR001451 Hexapeptide repeat Eco28_RS09905 IPR018357 Hexapeptide transferase, conserved site Eco28_RS09905 IPR005881 Serine O-acetyltransferase Eco28_RS09905 IPR011004 Trimeric LpxA-like superfamily Eco28_RS09910 IPR001296 Glycosyl transferase, family 1 Eco28_RS09910 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Eco28_RS09910 IPR023916 Colanic acid biosynthesis, glycosyl transferase, WcaC Eco28_RS09915 IPR024013 Colanic acid biosynthesis, putative colanic acid polymerase, WcaD Eco28_RS09920 IPR024010 Colanic acid biosynthesis, glycosyl transferase, WcaE Eco28_RS09920 IPR001173 Glycosyltransferase 2-like Eco28_RS09920 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS09925 IPR011004 Trimeric LpxA-like superfamily Eco28_RS09925 IPR018357 Hexapeptide transferase, conserved site Eco28_RS09925 IPR001451 Hexapeptide repeat Eco28_RS09925 IPR024005 Colanic acid biosynthesis, acetyltransferase, WcaF Eco28_RS09930 IPR036291 NAD(P)-binding domain superfamily Eco28_RS09930 IPR016040 NAD(P)-binding domain Eco28_RS09930 IPR006368 GDP-mannose 4,6-dehydratase Eco28_RS09935 IPR036291 NAD(P)-binding domain superfamily Eco28_RS09935 IPR028614 GDP-L-fucose synthase/GDP-L-colitose synthase Eco28_RS09935 IPR001509 NAD-dependent epimerase/dehydratase Eco28_RS09940 IPR033715 GDP-mannose mannosyl hydrolase Eco28_RS09940 IPR028613 GDP-mannose mannosyl hydrolase, Enterobacteria Eco28_RS09940 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS09940 IPR020084 NUDIX hydrolase, conserved site Eco28_RS09940 IPR000086 NUDIX hydrolase domain Eco28_RS09945 IPR001296 Glycosyl transferase, family 1 Eco28_RS09945 IPR023910 Colanic acid biosynthesis, glycosyl transferase, WcaI Eco28_RS09945 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Eco28_RS09950 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase Eco28_RS09950 IPR011051 RmlC-like cupin domain superfamily Eco28_RS09950 IPR014710 RmlC-like jelly roll fold Eco28_RS09950 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal Eco28_RS09950 IPR005835 Nucleotidyl transferase domain Eco28_RS09950 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS09955 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Eco28_RS09955 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Eco28_RS09955 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Eco28_RS09955 IPR005843 Alpha-D-phosphohexomutase, C-terminal Eco28_RS09955 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily Eco28_RS09955 IPR016066 Alpha-D-phosphohexomutase, conserved site Eco28_RS09955 IPR005841 Alpha-D-phosphohexomutase superfamily Eco28_RS09955 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Eco28_RS09960 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase Eco28_RS09960 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ Eco28_RS09960 IPR003362 Bacterial sugar transferase Eco28_RS09970 IPR023918 Colanic acid biosynthesis, pyruvyl transferase, WcaK Eco28_RS09970 IPR007345 Polysaccharide pyruvyl transferase Eco28_RS09975 IPR023884 Colanic acid biosynthesis, glycosyl transferase, WcaL Eco28_RS09975 IPR001296 Glycosyl transferase, family 1 Eco28_RS09975 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Eco28_RS09980 IPR023882 Colanic acid biosynthesis WcaM Eco28_RS09980 IPR011050 Pectin lyase fold/virulence factor Eco28_RS09985 IPR005774 UTP-glucose pyrophosphorylase, regulatory subunit Eco28_RS09985 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS09985 IPR005835 Nucleotidyl transferase domain Eco28_RS09985 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type Eco28_RS09995 IPR036291 NAD(P)-binding domain superfamily Eco28_RS09995 IPR005888 dTDP-glucose 4,6-dehydratase Eco28_RS09995 IPR016040 NAD(P)-binding domain Eco28_RS10000 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS10000 IPR005835 Nucleotidyl transferase domain Eco28_RS10000 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form Eco28_RS10010 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS10010 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS10010 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Eco28_RS10030 IPR029069 HotDog domain superfamily Eco28_RS10030 IPR002539 MaoC-like dehydratase domain Eco28_RS10035 IPR001173 Glycosyltransferase 2-like Eco28_RS10035 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS10050 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Eco28_RS10050 IPR036291 NAD(P)-binding domain superfamily Eco28_RS10050 IPR013692 UDP-glucose 4-epimerase CapD, C-terminal domain Eco28_RS10060 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Eco28_RS10060 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like Eco28_RS10075 IPR036291 NAD(P)-binding domain superfamily Eco28_RS10075 IPR006183 6-phosphogluconate dehydrogenase Eco28_RS10075 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating Eco28_RS10075 IPR006114 6-phosphogluconate dehydrogenase, C-terminal Eco28_RS10075 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS10075 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS10075 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Eco28_RS10075 IPR006184 6-phosphogluconate-binding site Eco28_RS10080 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS10080 IPR036291 NAD(P)-binding domain superfamily Eco28_RS10080 IPR017476 UDP-glucose/GDP-mannose dehydrogenase Eco28_RS10080 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal Eco28_RS10080 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Eco28_RS10080 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation Eco28_RS10080 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal Eco28_RS10080 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type Eco28_RS10085 IPR003856 Polysaccharide chain length determinant N-terminal domain Eco28_RS10095 IPR023019 Histidine biosynthesis bifunctional protein HisIE Eco28_RS10095 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase Eco28_RS10095 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like Eco28_RS10095 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain Eco28_RS10095 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily Eco28_RS10100 IPR006062 Histidine biosynthesis Eco28_RS10100 IPR011060 Ribulose-phosphate binding barrel Eco28_RS10100 IPR013785 Aldolase-type TIM barrel Eco28_RS10100 IPR004651 Histidine biosynthesis, HisF Eco28_RS10105 IPR013785 Aldolase-type TIM barrel Eco28_RS10105 IPR006062 Histidine biosynthesis Eco28_RS10105 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA Eco28_RS10105 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Eco28_RS10105 IPR011060 Ribulose-phosphate binding barrel Eco28_RS10110 IPR029062 Class I glutamine amidotransferase-like Eco28_RS10110 IPR017926 Glutamine amidotransferase Eco28_RS10110 IPR010139 Imidazole glycerol phosphate synthase, subunit H Eco28_RS10115 IPR005954 Histidinol-phosphatase Eco28_RS10115 IPR006543 Histidinol-phosphate phosphatase Eco28_RS10115 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS10115 IPR000807 Imidazoleglycerol-phosphate dehydratase Eco28_RS10115 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily Eco28_RS10115 IPR020566 Histidine biosynthesis bifunctional protein HisB Eco28_RS10115 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Eco28_RS10115 IPR036412 HAD-like superfamily Eco28_RS10115 IPR013954 Polynucleotide kinase 3 phosphatase Eco28_RS10115 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site Eco28_RS10115 IPR023214 HAD superfamily Eco28_RS10120 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS10120 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS10120 IPR005861 Histidinol-phosphate aminotransferase family Eco28_RS10120 IPR004839 Aminotransferase, class I/classII Eco28_RS10120 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site Eco28_RS10120 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS10125 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS10125 IPR012131 Histidinol dehydrogenase Eco28_RS10125 IPR001692 Histidinol dehydrogenase, conserved site Eco28_RS10125 IPR022695 Histidinol dehydrogenase, monofunctional Eco28_RS10130 IPR011322 Nitrogen regulatory PII-like, alpha/beta Eco28_RS10130 IPR013820 ATP phosphoribosyltransferase, catalytic domain Eco28_RS10130 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Eco28_RS10130 IPR018198 ATP phosphoribosyltransferase, conserved site Eco28_RS10130 IPR001348 ATP phosphoribosyltransferase HisG Eco28_RS10130 IPR020621 ATP phosphoribosyltransferase HisG, long form Eco28_RS10130 IPR013115 Histidine biosynthesis HisG, C-terminal Eco28_RS10145 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM Eco28_RS10145 IPR036165 YefM-like superfamily Eco28_RS10150 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Eco28_RS10150 IPR009614 Toxin YoeB Eco28_RS10155 IPR001509 NAD-dependent epimerase/dehydratase Eco28_RS10155 IPR036291 NAD(P)-binding domain superfamily Eco28_RS10160 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS10160 IPR005119 LysR, substrate-binding Eco28_RS10160 IPR000847 Transcription regulator HTH, LysR Eco28_RS10160 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS10165 IPR002293 Amino acid/polyamine transporter I Eco28_RS10170 IPR007272 Sulphur transport domain Eco28_RS10175 IPR036868 TusA-like domain superfamily Eco28_RS10175 IPR001455 TusA-like domain Eco28_RS10180 IPR038649 Exonuclease I, SH3-like domain superfamily Eco28_RS10180 IPR034747 Exonuclease I, SH3-like domain Eco28_RS10180 IPR034748 Exonuclease I, C-terminal alpha-helical domain Eco28_RS10180 IPR023607 Exodeoxyribonuclease I Eco28_RS10180 IPR013520 Exonuclease, RNase T/DNA polymerase III Eco28_RS10180 IPR012337 Ribonuclease H-like superfamily Eco28_RS10180 IPR013620 Exodeoxyribonuclease I, C-terminal Eco28_RS10180 IPR036397 Ribonuclease H superfamily Eco28_RS10185 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Eco28_RS10185 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS10185 IPR015956 Penicillin-binding protein, C-terminal domain superfamily Eco28_RS10185 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A Eco28_RS10185 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily Eco28_RS10185 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal Eco28_RS10190 IPR011256 Regulatory factor, effector binding domain superfamily Eco28_RS10190 IPR010499 Bacterial transcription activator, effector binding Eco28_RS10190 IPR029442 GyrI-like small molecule binding domain Eco28_RS10190 IPR024911 DNA gyrase inhibitor GyrI Eco28_RS10195 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein Eco28_RS10200 IPR007458 Protein of unknown function DUF496 Eco28_RS10205 IPR012381 Ethanolamine/propanediol utilisation protein, EutP/PduV Eco28_RS10205 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS10210 IPR039552 Transposase IS66, C-terminal Eco28_RS10210 IPR004291 Transposase, IS66 Eco28_RS10210 IPR024463 Transposase TnpC, homeodomain Eco28_RS10210 IPR024474 Zinc-finger binding domain of transposase IS66 Eco28_RS10220 IPR009610 CbtA toxin of type IV toxin-antitoxin system Eco28_RS10225 IPR038025 Antitoxin CbeA superfamily Eco28_RS10225 IPR009320 Antitoxin CbeA Eco28_RS10230 IPR009329 Protein of unknown function DUF987 Eco28_RS10235 IPR025657 RadC-like JAB domain Eco28_RS10235 IPR037518 MPN domain Eco28_RS10235 IPR001405 Uncharacterised protein family UPF0758 Eco28_RS10235 IPR020891 Uncharacterised protein family UPF0758, conserved site Eco28_RS10240 IPR004914 Antirestriction protein Eco28_RS10240 IPR042297 Antirestriction domain superfamily Eco28_RS10245 IPR026325 Protein of unknown function DUF932 Eco28_RS10270 IPR025599 YjcZ-like protein Eco28_RS10275 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS10275 IPR022812 Dynamin superfamily Eco28_RS10275 IPR030381 Dynamin-type guanine nucleotide-binding (G) domain Eco28_RS10285 IPR039552 Transposase IS66, C-terminal Eco28_RS10285 IPR004291 Transposase, IS66 Eco28_RS10285 IPR024474 Zinc-finger binding domain of transposase IS66 Eco28_RS10285 IPR024463 Transposase TnpC, homeodomain Eco28_RS10290 IPR008878 Transposase IS66, Orf2 Eco28_RS10295 IPR025948 HTH-like domain Eco28_RS10295 IPR009057 Homeobox-like domain superfamily Eco28_RS10295 IPR036397 Ribonuclease H superfamily Eco28_RS10295 IPR012337 Ribonuclease H-like superfamily Eco28_RS10295 IPR001584 Integrase, catalytic core Eco28_RS10295 IPR002514 Transposase IS3/IS911family Eco28_RS10320 IPR038965 Transposase InsF-like Eco28_RS10320 IPR012337 Ribonuclease H-like superfamily Eco28_RS10320 IPR001584 Integrase, catalytic core Eco28_RS10320 IPR036397 Ribonuclease H superfamily Eco28_RS10325 IPR002514 Transposase IS3/IS911family Eco28_RS10325 IPR009057 Homeobox-like domain superfamily Eco28_RS10330 IPR001584 Integrase, catalytic core Eco28_RS10330 IPR025246 Transposase IS30-like HTH domain Eco28_RS10330 IPR036397 Ribonuclease H superfamily Eco28_RS10330 IPR001598 Transposase, IS30, conserved site Eco28_RS10330 IPR012337 Ribonuclease H-like superfamily Eco28_RS10335 IPR009057 Homeobox-like domain superfamily Eco28_RS10335 IPR002514 Transposase IS3/IS911family Eco28_RS10350 IPR001584 Integrase, catalytic core Eco28_RS10350 IPR006120 Resolvase, HTH domain Eco28_RS10350 IPR012337 Ribonuclease H-like superfamily Eco28_RS10350 IPR036397 Ribonuclease H superfamily Eco28_RS10350 IPR017894 HTH domain, IS21 transposase-type Eco28_RS10355 IPR003593 AAA+ ATPase domain Eco28_RS10355 IPR001270 ClpA/B family Eco28_RS10355 IPR002611 IstB-like ATP-binding protein Eco28_RS10355 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS10355 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Eco28_RS10420 IPR017947 Aryldialkylphosphatase, zinc-binding site Eco28_RS10420 IPR001559 Phosphotriesterase Eco28_RS10420 IPR032466 Metal-dependent hydrolase Eco28_RS10450 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS10455 IPR012910 TonB-dependent receptor, plug domain Eco28_RS10455 IPR039426 Vitamin B12 transporter BtuB-like Eco28_RS10455 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS10485 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase Eco28_RS10485 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS10490 IPR003805 Adenosylcobinamide-GDP ribazoletransferase Eco28_RS10495 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal Eco28_RS10495 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic Eco28_RS10495 IPR036087 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like superfamily Eco28_RS10495 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like Eco28_RS10500 IPR038063 L,D-transpeptidase catalytic domain-like Eco28_RS10500 IPR041597 L,D-transpeptidase C-terminal domain Eco28_RS10500 IPR005490 L,D-transpeptidase catalytic domain Eco28_RS10510 IPR005119 LysR, substrate-binding Eco28_RS10510 IPR000847 Transcription regulator HTH, LysR Eco28_RS10510 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS10510 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS10515 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS10515 IPR000847 Transcription regulator HTH, LysR Eco28_RS10515 IPR005119 LysR, substrate-binding Eco28_RS10515 IPR037408 HTH-type transcriptional regulator cbl, PBP2 domain Eco28_RS10515 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS10525 IPR002528 Multi antimicrobial extrusion protein Eco28_RS10540 IPR026562 Probable transcriptional regulatory protein YeeN Eco28_RS10540 IPR026564 Transcriptional regulator TACO1-like, domain 3 Eco28_RS10540 IPR002876 Transcriptional regulator TACO1-like Eco28_RS10540 IPR017856 Integrase-like, N-terminal Eco28_RS10540 IPR029072 YebC-like Eco28_RS10545 IPR011271 AMP nucleosidase Eco28_RS10545 IPR018953 AMP nucleoside phosphorylase, N-terminal Eco28_RS10545 IPR035994 Nucleoside phosphorylase superfamily Eco28_RS10545 IPR000845 Nucleoside phosphorylase domain Eco28_RS10545 IPR037109 AMP nucleoside phosphorylase, N-terminal domain superfamily Eco28_RS10550 IPR036259 MFS transporter superfamily Eco28_RS10550 IPR004736 MFS transporter, metabolite:H symporter Eco28_RS10550 IPR005829 Sugar transporter, conserved site Eco28_RS10550 IPR011701 Major facilitator superfamily Eco28_RS10550 IPR020846 Major facilitator superfamily domain Eco28_RS10550 IPR005828 Major facilitator, sugar transporter-like Eco28_RS10575 IPR024079 Metallopeptidase, catalytic domain superfamily Eco28_RS10575 IPR042252 MtfA, N-terminal Eco28_RS10575 IPR010384 MtfA family Eco28_RS10590 IPR016174 Di-haem cytochrome, transmembrane Eco28_RS10590 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Eco28_RS10595 IPR012674 Calycin Eco28_RS10595 IPR015304 ZinT domain Eco28_RS10605 IPR025668 Transposase DDE domain Eco28_RS10610 IPR012674 Calycin Eco28_RS10610 IPR015304 ZinT domain Eco28_RS10615 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ Eco28_RS10615 IPR013130 Ferric reductase transmembrane component-like domain Eco28_RS10620 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS10620 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily Eco28_RS10620 IPR000572 Oxidoreductase, molybdopterin-binding domain Eco28_RS10620 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP Eco28_RS10625 IPR023419 Transthyretin, conserved site Eco28_RS10625 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily Eco28_RS10625 IPR023416 Transthyretin/hydroxyisourate hydrolase domain Eco28_RS10625 IPR000895 Transthyretin/hydroxyisourate hydrolase Eco28_RS10625 IPR023418 Transthyretin, thyroxine binding site Eco28_RS10625 IPR014306 Hydroxyisourate hydrolase Eco28_RS10630 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response Eco28_RS10630 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS10630 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS10630 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS10630 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS10630 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS10630 IPR011006 CheY-like superfamily Eco28_RS10635 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS10635 IPR003660 HAMP domain Eco28_RS10635 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS10635 IPR005467 Histidine kinase domain Eco28_RS10635 IPR006290 Heavy metal sensor kinase Eco28_RS10635 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS10635 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS10635 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS10640 IPR017283 Protein/nucleic acid deglycase HchA Eco28_RS10640 IPR029062 Class I glutamine amidotransferase-like Eco28_RS10650 IPR006674 HD domain Eco28_RS10650 IPR003607 HD/PDEase domain Eco28_RS10655 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS10655 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site Eco28_RS10655 IPR018117 DNA methylase, C-5 cytosine-specific, active site Eco28_RS10655 IPR040743 DNA methylase N-terminal domain Eco28_RS10655 IPR001525 C-5 cytosine methyltransferase Eco28_RS10660 IPR011335 Restriction endonuclease type II-like Eco28_RS10660 IPR004603 DNA mismatch endonuclease vsr Eco28_RS10665 IPR004779 Carboxylate/Amino Acid/Amine Transporter Eco28_RS10665 IPR000620 EamA domain Eco28_RS10670 IPR008526 Inner membrane protein YedI Eco28_RS10675 IPR019226 Protein of unknown function DUF2158 Eco28_RS10685 IPR029787 Nucleotide cyclase Eco28_RS10685 IPR000160 GGDEF domain Eco28_RS10685 IPR033416 Periplasmic sensor domain CHASE7 Eco28_RS10690 IPR023214 HAD superfamily Eco28_RS10690 IPR036412 HAD-like superfamily Eco28_RS10690 IPR006381 HAD-superfamily hydrolase, superfamily IIB, MPGP Eco28_RS10690 IPR006379 HAD-superfamily hydrolase, subfamily IIB Eco28_RS10690 IPR012815 Mannosyl-3-phosphoglycerate phosphatase Eco28_RS10695 IPR019669 Uncharacterised bacterial stress protein YodD Eco28_RS10705 IPR019717 Dextransucrase DSRB Eco28_RS10710 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS10710 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS10710 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS10710 IPR030866 Transcriptional regulatory protein RcsA Eco28_RS10715 IPR006303 Flagellar biosynthesis protein FliR Eco28_RS10715 IPR002010 Type III secretion system inner membrane R protein Eco28_RS10720 IPR002191 Bacterial export protein family 3 Eco28_RS10720 IPR006305 Flagellar biosynthesis protein FliQ Eco28_RS10725 IPR005838 Type III secretion system inner membrane P protein Eco28_RS10725 IPR005837 Flagellar transport protein FliP Eco28_RS10730 IPR022781 Flagellar biosynthesis protein, FliO Eco28_RS10735 IPR012826 Flagellar motor switch FliN Eco28_RS10735 IPR031576 Flagellar motor switch protein FliN, N-terminal Eco28_RS10735 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb Eco28_RS10735 IPR001543 Surface presentation of antigen (SpoA) Eco28_RS10735 IPR036429 SpoA-like superfamily Eco28_RS10740 IPR001543 Surface presentation of antigen (SpoA) Eco28_RS10740 IPR001689 Flagellar motor switch protein FliM Eco28_RS10740 IPR028976 CheC-like superfamily Eco28_RS10740 IPR036429 SpoA-like superfamily Eco28_RS10745 IPR005503 Flagellar basal body-associated protein FliL Eco28_RS10750 IPR001635 Flagellar hook-length control protein FliK Eco28_RS10750 IPR021136 Flagellar hook-length control protein-like, C-terminal Eco28_RS10750 IPR038610 FliK-like, C-terminal domain superfamily Eco28_RS10755 IPR018006 Flagellar FliJ, proteobacteria Eco28_RS10755 IPR012823 Flagellar export FliJ Eco28_RS10760 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS10760 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Eco28_RS10760 IPR003593 AAA+ ATPase domain Eco28_RS10760 IPR032463 ATPase, type III secretion system, FliI Eco28_RS10760 IPR005714 ATPase, type III secretion system, FliI/YscN Eco28_RS10760 IPR020005 Flagellar export ATPase FliI, clade 1 Eco28_RS10760 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Eco28_RS10760 IPR040627 T3SS EscN ATPase, C-terminal Eco28_RS10765 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE Eco28_RS10765 IPR000563 Flagellar assembly protein FliH Eco28_RS10770 IPR032779 Flagellar motor switch protein FliG, middle domain Eco28_RS10770 IPR028263 Flagellar motor switch protein FliG, N-terminal domain Eco28_RS10770 IPR000090 Flagellar motor switch protein FliG Eco28_RS10770 IPR023087 Flagellar motor switch protein FliG, C-terminal Eco28_RS10770 IPR011002 Flagellar motor switch protein FliG, alpha-helical Eco28_RS10775 IPR006182 Secretory protein YscJ/FliF Eco28_RS10775 IPR000067 Flagellar M-ring protein FliF Eco28_RS10775 IPR013556 Flagellar M-ring C-terminal Eco28_RS10780 IPR001624 Flagellar hook-basal body complex protein FliE Eco28_RS10790 IPR020484 Protein of unknown function DUF5503 Eco28_RS10800 IPR000182 GNAT domain Eco28_RS10800 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS10805 IPR003738 SOS response associated peptidase (SRAP) Eco28_RS10805 IPR036590 SOS response associated peptidase-like Eco28_RS10810 IPR036868 TusA-like domain superfamily Eco28_RS10810 IPR001455 TusA-like domain Eco28_RS10815 IPR007272 Sulphur transport domain Eco28_RS10825 IPR038624 YedD-like superfamily Eco28_RS10825 IPR025596 YedD-like protein Eco28_RS10830 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Eco28_RS10830 IPR013780 Glycosyl hydrolase, all-beta Eco28_RS10830 IPR013776 Alpha-amylase, thermostable Eco28_RS10830 IPR017853 Glycoside hydrolase superfamily Eco28_RS10830 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta Eco28_RS10835 IPR008622 Flagellar protein FliT Eco28_RS10840 IPR036584 Flagellar protein FliS superfamily Eco28_RS10840 IPR003713 Flagellar protein FliS Eco28_RS10845 IPR010809 Flagellar hook-associated protein 2, C-terminal Eco28_RS10845 IPR040026 Flagellar hook-associated protein 2 Eco28_RS10845 IPR003481 Flagellar hook-associated protein 2, N-terminal Eco28_RS10855 IPR001029 Flagellin, D0/D1 domain Eco28_RS10855 IPR032826 Flagellin, H7-serospecific domain Eco28_RS10855 IPR001492 Flagellin Eco28_RS10860 IPR013324 RNA polymerase sigma factor, region 3/4-like Eco28_RS10860 IPR014284 RNA polymerase sigma-70 like domain Eco28_RS10860 IPR000943 RNA polymerase sigma-70 Eco28_RS10860 IPR028617 RNA polymerase sigma factor FliA Eco28_RS10860 IPR007624 RNA polymerase sigma-70 region 3 Eco28_RS10860 IPR007630 RNA polymerase sigma-70 region 4 Eco28_RS10860 IPR007627 RNA polymerase sigma-70 region 2 Eco28_RS10860 IPR013325 RNA polymerase sigma factor, region 2 Eco28_RS10860 IPR012845 RNA polymerase sigma factor, FliA/WhiG Eco28_RS10865 IPR022523 Flagellar regulator, FliZ Eco28_RS10865 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS10870 IPR018313 Solute-binding protein family 3, conserved site Eco28_RS10870 IPR001320 Ionotropic glutamate receptor Eco28_RS10870 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS10875 IPR001926 Pyridoxal-phosphate dependent enzyme Eco28_RS10875 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Eco28_RS10875 IPR023702 D-cysteine desulphhydrase, bacterial Eco28_RS10875 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Eco28_RS10875 IPR005966 D-cysteine desulfhydrase Eco28_RS10880 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS10880 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS10880 IPR035906 MetI-like superfamily Eco28_RS10885 IPR003439 ABC transporter-like Eco28_RS10885 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type Eco28_RS10885 IPR003593 AAA+ ATPase domain Eco28_RS10885 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS10885 IPR017871 ABC transporter, conserved site Eco28_RS10890 IPR036693 Transcription factor LuxR-like, autoinducer-binding domain superfamily Eco28_RS10890 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS10890 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS10890 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain Eco28_RS10890 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS10900 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS10900 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS10900 IPR011006 CheY-like superfamily Eco28_RS10900 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS10905 IPR038476 UvrC homology region 2 superfamily Eco28_RS10905 IPR001162 UvrC family homology region Eco28_RS10905 IPR036876 UVR domain superfamily Eco28_RS10905 IPR004791 UvrABC system, subunit C Eco28_RS10905 IPR010994 RuvA domain 2-like Eco28_RS10905 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Eco28_RS10905 IPR035901 GIY-YIG endonuclease superfamily Eco28_RS10905 IPR000305 GIY-YIG endonuclease Eco28_RS10905 IPR001943 UVR domain Eco28_RS10910 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Eco28_RS10910 IPR000462 CDP-alcohol phosphatidyltransferase Eco28_RS10910 IPR023762 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, bacterial Eco28_RS10930 IPR036255 YgfB-like superfamily Eco28_RS10930 IPR004027 SEC-C motif Eco28_RS10930 IPR011978 Uncharacterised protein family UPF0149 Eco28_RS10935 IPR018227 Amino acid/polyamine transporter 2 Eco28_RS10935 IPR013059 Tryptophan/tyrosine transporter Eco28_RS10935 IPR013061 Tryptophan/tryrosine permease, conserved site Eco28_RS10940 IPR019620 Putative metal-binding protein Eco28_RS10945 IPR009078 Ferritin-like superfamily Eco28_RS10945 IPR009040 Ferritin-like diiron domain Eco28_RS10945 IPR008331 Ferritin/DPS protein domain Eco28_RS10945 IPR041719 Ferritin, prokaryotic-type Eco28_RS10945 IPR012347 Ferritin-like Eco28_RS10945 IPR001519 Ferritin Eco28_RS10950 IPR025731 YecR-like lipoprotein Eco28_RS10960 IPR020262 Uncharacterised protein family YecJ Eco28_RS10965 IPR001519 Ferritin Eco28_RS10965 IPR009040 Ferritin-like diiron domain Eco28_RS10965 IPR008331 Ferritin/DPS protein domain Eco28_RS10965 IPR012347 Ferritin-like Eco28_RS10965 IPR041719 Ferritin, prokaryotic-type Eco28_RS10965 IPR009078 Ferritin-like superfamily Eco28_RS10975 IPR026266 L-arabinose-binding periplasmic protein Eco28_RS10975 IPR028082 Periplasmic binding protein-like I Eco28_RS10975 IPR001761 Periplasmic binding protein/LacI sugar binding domain Eco28_RS10980 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS10980 IPR017917 ABC transporter, arabinose import, ATP-binding protein, AraG Eco28_RS10980 IPR017871 ABC transporter, conserved site Eco28_RS10980 IPR003593 AAA+ ATPase domain Eco28_RS10980 IPR003439 ABC transporter-like Eco28_RS10985 IPR001851 ABC transporter, permease Eco28_RS10990 IPR023214 HAD superfamily Eco28_RS10990 IPR003337 Trehalose-phosphatase Eco28_RS10990 IPR036412 HAD-like superfamily Eco28_RS10990 IPR006379 HAD-superfamily hydrolase, subfamily IIB Eco28_RS10995 IPR001830 Glycosyl transferase, family 20 Eco28_RS10995 IPR012766 Alpha,alpha-trehalose-phosphate synthase Eco28_RS11000 IPR006015 Universal stress protein A family Eco28_RS11000 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS11000 IPR006016 UspA Eco28_RS11005 IPR023559 Flagellar transcriptional activator FlhD Eco28_RS11005 IPR036194 Flagellar transcriptional activator FlhD superfamily Eco28_RS11010 IPR007944 Flagellar transcriptional activator FlhC Eco28_RS11015 IPR000540 Flagellar motor protein MotA, conserved site Eco28_RS11015 IPR002898 MotA/TolQ/ExbB proton channel Eco28_RS11015 IPR022522 Flagellar motor stator, MotA Eco28_RS11020 IPR006665 OmpA-like domain Eco28_RS11020 IPR025713 Motility protein B, N-terminal domain Eco28_RS11020 IPR036737 OmpA-like domain superfamily Eco28_RS11025 IPR035891 CheY-binding domain of CheA Eco28_RS11025 IPR005467 Histidine kinase domain Eco28_RS11025 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS11025 IPR015162 CheY binding Eco28_RS11025 IPR002545 CheW-like domain Eco28_RS11025 IPR036641 HPT domain superfamily Eco28_RS11025 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS11025 IPR036061 CheW-like domain superfamily Eco28_RS11025 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily Eco28_RS11025 IPR004105 Histidine kinase CheA-like, homodimeric domain Eco28_RS11025 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Eco28_RS11025 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS11025 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS11030 IPR036061 CheW-like domain superfamily Eco28_RS11030 IPR039315 Chemotaxis protein CheW Eco28_RS11030 IPR002545 CheW-like domain Eco28_RS11035 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS11035 IPR003660 HAMP domain Eco28_RS11035 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily Eco28_RS11035 IPR004090 Chemotaxis methyl-accepting receptor Eco28_RS11035 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding Eco28_RS11035 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site Eco28_RS11040 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily Eco28_RS11040 IPR004090 Chemotaxis methyl-accepting receptor Eco28_RS11040 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site Eco28_RS11040 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS11040 IPR003660 HAMP domain Eco28_RS11040 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding Eco28_RS11045 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS11045 IPR036804 Chemotaxis receptor methyltransferase CheR, N-terminal domain superfamily Eco28_RS11045 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal Eco28_RS11045 IPR000780 MCP methyltransferase, CheR-type Eco28_RS11045 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal Eco28_RS11045 IPR026024 Chemotaxis protein methyltransferase CheR Eco28_RS11050 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type Eco28_RS11050 IPR035909 Methylesterase CheB, C-terminal Eco28_RS11050 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase Eco28_RS11050 IPR011006 CheY-like superfamily Eco28_RS11050 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS11055 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS11055 IPR011006 CheY-like superfamily Eco28_RS11060 IPR007439 Chemotaxis phosphatase, CheZ Eco28_RS11065 IPR029025 Type III secretion system substrate exporter, C-terminal Eco28_RS11065 IPR006135 Type III secretion system substrate exporter Eco28_RS11065 IPR006136 Flagellar biosynthetic protein FlhB Eco28_RS11070 IPR042193 FHIPEP, domain 3 Eco28_RS11070 IPR025505 FHIPEP conserved site Eco28_RS11070 IPR042196 FHIPEP, domain 4 Eco28_RS11070 IPR042194 FHIPEP, domain 1 Eco28_RS11070 IPR001712 Type III secretion system FHIPEP Eco28_RS11070 IPR006301 Flagellar biosynthesis protein FlhA Eco28_RS11075 IPR009420 Flagellar protein FlhE Eco28_RS11080 IPR009739 Lysozyme inhibitor LprI, N-terminal Eco28_RS11085 IPR005148 Arginyl tRNA synthetase N-terminal domain Eco28_RS11085 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Eco28_RS11085 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS11085 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily Eco28_RS11085 IPR008909 DALR anticodon binding Eco28_RS11085 IPR035684 Arginyl-tRNA synthetase, catalytic core domain Eco28_RS11085 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Eco28_RS11085 IPR001278 Arginine-tRNA ligase Eco28_RS11095 IPR010393 Protein of unknown function DUF991 Eco28_RS11095 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Eco28_RS11100 IPR036822 Copper homeostasis (CutC) domain superfamily Eco28_RS11100 IPR023648 Copper homeostasis CutC domain Eco28_RS11100 IPR005627 Copper homeostasis protein CutC Eco28_RS11105 IPR036280 Multiheme cytochrome superfamily Eco28_RS11105 IPR011031 Multihaem cytochrome Eco28_RS11105 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK Eco28_RS11105 IPR038266 NapC/NirT cytochrome c superfamily Eco28_RS11105 IPR005126 NapC/NirT cytochrome c, N-terminal Eco28_RS11110 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS11110 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS11110 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS11110 IPR006656 Molybdopterin oxidoreductase Eco28_RS11110 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS11110 IPR041460 Molybdopterin oxidoreductase, N-terminal Eco28_RS11110 IPR041954 Trimethylamine-N-oxide reductase-like, molybdopterin-binding domain Eco28_RS11110 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase Eco28_RS11110 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS11115 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS11115 IPR010017 tRNA U34 carboxymethyltransferase Eco28_RS11115 IPR027555 tRNA (mo5U34)-methyltransferase-like Eco28_RS11120 IPR005271 Carboxy-S-adenosyl-L-methionine synthase Eco28_RS11120 IPR041698 Methyltransferase domain 25 Eco28_RS11120 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS11125 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein Eco28_RS11125 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain superfamily Eco28_RS11130 IPR036520 UPF0759 superfamily Eco28_RS11130 IPR002763 Protein of unknown function DUF72 Eco28_RS11135 IPR000868 Isochorismatase-like Eco28_RS11135 IPR036380 Isochorismatase-like superfamily Eco28_RS11140 IPR029351 GAD domain Eco28_RS11140 IPR004115 GAD-like domain superfamily Eco28_RS11140 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb Eco28_RS11140 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS11140 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Eco28_RS11140 IPR004524 Aspartate-tRNA ligase, type 1 Eco28_RS11140 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS11140 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Eco28_RS11145 IPR000086 NUDIX hydrolase domain Eco28_RS11145 IPR020084 NUDIX hydrolase, conserved site Eco28_RS11145 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS11145 IPR003564 Dihydroneopterin triphosphate diphosphatase Eco28_RS11150 IPR002876 Transcriptional regulator TACO1-like Eco28_RS11150 IPR026564 Transcriptional regulator TACO1-like, domain 3 Eco28_RS11150 IPR029072 YebC-like Eco28_RS11150 IPR017856 Integrase-like, N-terminal Eco28_RS11155 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site Eco28_RS11155 IPR036397 Ribonuclease H superfamily Eco28_RS11155 IPR002176 Crossover junction endodeoxyribonuclease RuvC Eco28_RS11155 IPR012337 Ribonuclease H-like superfamily Eco28_RS11160 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Eco28_RS11160 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS11170 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial Eco28_RS11170 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Eco28_RS11170 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS11170 IPR000085 Bacterial DNA recombination protein RuvA Eco28_RS11170 IPR010994 RuvA domain 2-like Eco28_RS11170 IPR011114 Holliday junction DNA helicase RuvA, C-terminal Eco28_RS11170 IPR036267 RuvA, C-terminal domain superfamily Eco28_RS11175 IPR003593 AAA+ ATPase domain Eco28_RS11175 IPR041445 RuvB, AAA lid domain Eco28_RS11175 IPR004605 DNA helicase, Holliday junction RuvB-type Eco28_RS11175 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS11175 IPR008824 RuvB-like P-loop domain Eco28_RS11175 IPR008823 RuvB C-terminal winged helix domain Eco28_RS11175 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS11175 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS11180 IPR001626 ABC transporter, TroCD-like Eco28_RS11180 IPR037294 ABC transporter, BtuC-like Eco28_RS11185 IPR017882 Zinc import ATP-binding protein ZnuC Eco28_RS11185 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS11185 IPR003593 AAA+ ATPase domain Eco28_RS11185 IPR003439 ABC transporter-like Eco28_RS11190 IPR006127 Periplasmic solute binding protein, ZnuA-like Eco28_RS11190 IPR035520 High-affinity zinc uptake system protein ZnuA Eco28_RS11190 IPR006128 Adhesion lipoprotein Eco28_RS11195 IPR013731 Opacity-associated protein A, N-terminal Eco28_RS11195 IPR016047 Peptidase M23 Eco28_RS11195 IPR018392 LysM domain Eco28_RS11195 IPR011055 Duplicated hybrid motif Eco28_RS11200 IPR004960 Bacterial lipid A biosynthesis acyltransferase Eco28_RS11200 IPR011921 Lipid A biosynthesis myristoyltransferase Eco28_RS11205 IPR011037 Pyruvate kinase-like, insert domain superfamily Eco28_RS11205 IPR015795 Pyruvate kinase, C-terminal Eco28_RS11205 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS11205 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS11205 IPR036918 Pyruvate kinase, C-terminal domain superfamily Eco28_RS11205 IPR015806 Pyruvate kinase, insert domain superfamily Eco28_RS11205 IPR018209 Pyruvate kinase, active site Eco28_RS11205 IPR001697 Pyruvate kinase Eco28_RS11205 IPR015793 Pyruvate kinase, barrel Eco28_RS11210 IPR001347 Sugar isomerase (SIS) Eco28_RS11210 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS11210 IPR000281 Helix-turn-helix protein RpiR Eco28_RS11210 IPR009057 Homeobox-like domain superfamily Eco28_RS11210 IPR035472 RpiR-like, SIS domain Eco28_RS11215 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal Eco28_RS11215 IPR036291 NAD(P)-binding domain superfamily Eco28_RS11215 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding Eco28_RS11215 IPR019796 Glucose-6-phosphate dehydrogenase, active site Eco28_RS11215 IPR001282 Glucose-6-phosphate dehydrogenase Eco28_RS11220 IPR037237 IlvD/EDD, N-terminal domain Eco28_RS11220 IPR042096 Dihydroxy-acid dehydratase, C-terminal Eco28_RS11220 IPR004786 6-phosphogluconate dehydratase Eco28_RS11220 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site Eco28_RS11220 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase Eco28_RS11225 IPR031337 KDPG/KHG aldolase, active site 1 Eco28_RS11225 IPR013785 Aldolase-type TIM barrel Eco28_RS11225 IPR000887 KDPG/KHG aldolase Eco28_RS11225 IPR031338 KDPG/KHG aldolase, active site 2 Eco28_RS11230 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase Eco28_RS11230 IPR011761 ATP-grasp fold Eco28_RS11230 IPR011054 Rudiment single hybrid motif Eco28_RS11230 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS11230 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Eco28_RS11230 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS11235 IPR038627 YebG-like superfamily Eco28_RS11235 IPR009813 Uncharacterised protein family YebG Eco28_RS11240 IPR038703 YebF/Cmi superfamily Eco28_RS11240 IPR020236 Uncharacterised protein family YebF Eco28_RS11240 IPR025603 YebF/Colicin-M immunity protein Eco28_RS11245 IPR007486 Inner membrane protein YebE Eco28_RS11245 IPR029024 TerB-like Eco28_RS11260 IPR013520 Exonuclease, RNase T/DNA polymerase III Eco28_RS11260 IPR036397 Ribonuclease H superfamily Eco28_RS11260 IPR012337 Ribonuclease H-like superfamily Eco28_RS11265 IPR003010 Carbon-nitrogen hydrolase Eco28_RS11265 IPR036526 Carbon-nitrogen hydrolase superfamily Eco28_RS11270 IPR009052 DNA polymerase III-theta, bacterial Eco28_RS11270 IPR036745 DNA polymerase III-theta superfamily Eco28_RS11275 IPR014756 Immunoglobulin E-set Eco28_RS11275 IPR007348 CopC domain Eco28_RS11275 IPR032694 Copper transport protein C/D Eco28_RS11280 IPR008457 Copper resistance protein D Eco28_RS11280 IPR032694 Copper transport protein C/D Eco28_RS11285 IPR019648 Protein of unknown function DUF2511 Eco28_RS11290 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Eco28_RS11290 IPR006186 Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase Eco28_RS11290 IPR029052 Metallo-dependent phosphatase-like Eco28_RS11295 IPR009954 Protein of unknown function DUF1482 Eco28_RS11300 IPR009950 Protein of unknown function DUF1480 Eco28_RS11305 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type Eco28_RS11305 IPR027391 rRNA small subunit methyltransferase F, RNA-binding PUA-like domain Eco28_RS11305 IPR011023 Nop2p Eco28_RS11305 IPR023267 RNA (C5-cytosine) methyltransferase Eco28_RS11305 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS11305 IPR023545 rRNA small subunit methyltransferase F Eco28_RS11305 IPR031341 Ribosomal RNA small subunit methyltransferase F, N-terminal Eco28_RS11305 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site Eco28_RS11310 IPR003399 Mce/MlaD Eco28_RS11315 IPR007498 Intermembrane transport protein PqiA-like Eco28_RS11315 IPR011031 Multihaem cytochrome Eco28_RS11315 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type Eco28_RS11320 IPR029016 GAF-like domain superfamily Eco28_RS11320 IPR000614 Free Met sulfoxide reductase conserved site Eco28_RS11320 IPR003018 GAF domain Eco28_RS11325 IPR016103 ProQ/FinO domain Eco28_RS11325 IPR023529 RNA chaperone ProQ Eco28_RS11325 IPR035236 RNA chaperone ProQ, C-terminal Eco28_RS11325 IPR036442 ProQ/FinO domain superfamily Eco28_RS11330 IPR040573 Tail specific protease, N-terminal domain Eco28_RS11330 IPR020992 Tail specific protease, C-terminal Eco28_RS11330 IPR005151 Tail specific protease Eco28_RS11330 IPR004447 C-terminal-processing peptidase S41A Eco28_RS11330 IPR036034 PDZ superfamily Eco28_RS11330 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS11330 IPR001478 PDZ domain Eco28_RS11335 IPR022919 Peptidase M48, protease HtpX, putative Eco28_RS11335 IPR001915 Peptidase M48 Eco28_RS11340 IPR036259 MFS transporter superfamily Eco28_RS11340 IPR020846 Major facilitator superfamily domain Eco28_RS11340 IPR011701 Major facilitator superfamily Eco28_RS11345 IPR036259 MFS transporter superfamily Eco28_RS11345 IPR020846 Major facilitator superfamily domain Eco28_RS11345 IPR011701 Major facilitator superfamily Eco28_RS11350 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS11350 IPR029016 GAF-like domain superfamily Eco28_RS11350 IPR005471 Transcription regulator IclR, N-terminal Eco28_RS11350 IPR014757 Transcription regulator IclR, C-terminal Eco28_RS11350 IPR011991 ArsR-like helix-turn-helix domain Eco28_RS11350 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS11355 IPR025611 YobH-like protein Eco28_RS11360 IPR020907 PhoP/PhoQ regulator MgrB Eco28_RS11365 IPR025594 YebO-like protein Eco28_RS11375 IPR019672 Protein of unknown function DUF2627 Eco28_RS11380 IPR012156 Cold shock, CspA Eco28_RS11380 IPR019844 Cold-shock (CSD) domain Eco28_RS11380 IPR002059 Cold-shock protein, DNA-binding Eco28_RS11380 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS11380 IPR011129 Cold shock domain Eco28_RS11385 IPR025714 Methyltransferase domain Eco28_RS11385 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted Eco28_RS11385 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS11390 IPR003810 Putative manganese efflux pump Eco28_RS11390 IPR022929 Putative manganese efflux pump MntP Eco28_RS11400 IPR009328 Protein of unknown function DUF986 Eco28_RS11405 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component Eco28_RS11410 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit Eco28_RS11415 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup Eco28_RS11415 IPR004701 Phosphotransferase system, mannose-type IIA component Eco28_RS11415 IPR033887 PTS system mannose/sorbose specific IIA subunit Eco28_RS11415 IPR013789 Phosphotransferase system, mannose family IIA component Eco28_RS11415 IPR004720 Phosphotransferase system, sorbose subfamily IIB component Eco28_RS11415 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily Eco28_RS11415 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily Eco28_RS11430 IPR005170 Transporter-associated domain Eco28_RS11430 IPR000644 CBS domain Eco28_RS11430 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS11430 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS11430 IPR005496 Integral membrane protein TerC Eco28_RS11435 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Eco28_RS11435 IPR001633 EAL domain Eco28_RS11435 IPR035919 EAL domain superfamily Eco28_RS11440 IPR005130 Serine dehydratase-like, alpha subunit Eco28_RS11440 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form Eco28_RS11440 IPR029009 Allosteric substrate binding domain superfamily Eco28_RS11440 IPR005131 Serine dehydratase beta chain Eco28_RS11445 IPR023735 Uncharacterised nudix hydrolase NudL Eco28_RS11445 IPR000059 NUDIX hydrolase, NudL, conserved site Eco28_RS11445 IPR000086 NUDIX hydrolase domain Eco28_RS11445 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS11450 IPR015890 Chorismate-utilising enzyme, C-terminal Eco28_RS11450 IPR019999 Anthranilate synthase component I-like Eco28_RS11450 IPR006805 Anthranilate synthase component I, N-terminal Eco28_RS11450 IPR005802 Aminodeoxychorismate synthase, component I Eco28_RS11450 IPR005801 ADC synthase Eco28_RS11455 IPR005371 Uncharacterised protein family UPF0181 Eco28_RS11460 IPR037210 YoaC-like superfamily Eco28_RS11460 IPR015079 Protein of unknown function DUF1889 Eco28_RS11465 IPR019897 RidA, conserved site Eco28_RS11465 IPR035959 RutC-like superfamily Eco28_RS11465 IPR006175 YjgF/YER057c/UK114 family Eco28_RS11465 IPR035709 RutC family, YoaB-like Eco28_RS11470 IPR006555 ATP-dependent helicase, C-terminal Eco28_RS11470 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type Eco28_RS11470 IPR006935 Helicase/UvrB, N-terminal Eco28_RS11470 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS11470 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS11475 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB Eco28_RS11475 IPR000905 Gcp-like domain Eco28_RS11480 IPR004658 Outer membrane lipoprotein Slp Eco28_RS11485 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS11485 IPR000873 AMP-dependent synthetase/ligase Eco28_RS11485 IPR025110 AMP-binding enzyme, C-terminal domain Eco28_RS11485 IPR020845 AMP-binding, conserved site Eco28_RS11490 IPR002562 3'-5' exonuclease domain Eco28_RS11490 IPR010997 HRDC-like superfamily Eco28_RS11490 IPR002121 HRDC domain Eco28_RS11490 IPR012337 Ribonuclease H-like superfamily Eco28_RS11490 IPR036397 Ribonuclease H superfamily Eco28_RS11490 IPR006292 Ribonuclease D Eco28_RS11495 IPR012675 Beta-grasp domain superfamily Eco28_RS11495 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS11495 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Eco28_RS11495 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS11495 IPR001433 Oxidoreductase FAD/NAD(P)-binding Eco28_RS11495 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Eco28_RS11495 IPR017927 FAD-binding domain, ferredoxin reductase-type Eco28_RS11495 IPR017938 Riboflavin synthase-like beta-barrel Eco28_RS11495 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Eco28_RS11495 IPR000951 Phthalate dioxygenase reductase Eco28_RS11495 IPR039003 Carnitine monooxygenase reductase subunit Eco28_RS11500 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit Eco28_RS11500 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site Eco28_RS11500 IPR039004 Carnitine monooxygenase oxygenase subunit Eco28_RS11500 IPR017941 Rieske [2Fe-2S] iron-sulphur domain Eco28_RS11500 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily Eco28_RS11500 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain Eco28_RS11505 IPR018093 BCCT transporter, conserved site Eco28_RS11505 IPR000060 BCCT transporter family Eco28_RS11510 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site Eco28_RS11510 IPR024084 Isopropylmalate dehydrogenase-like domain Eco28_RS11510 IPR011829 Tartrate dehydrogenase Eco28_RS11515 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS11515 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS11515 IPR000847 Transcription regulator HTH, LysR Eco28_RS11515 IPR005119 LysR, substrate-binding Eco28_RS11520 IPR001123 Amino acid exporter protein, LeuE-type Eco28_RS11525 IPR015392 Domain of unknown function DUF1971 Eco28_RS11525 IPR014710 RmlC-like jelly roll fold Eco28_RS11525 IPR014510 Tellurite resistance predicted, YeaR Eco28_RS11530 IPR036489 YoaG superfamily Eco28_RS11530 IPR015051 Protein YoaG Eco28_RS11535 IPR007341 Transglycosylase-associated protein Eco28_RS11550 IPR029787 Nucleotide cyclase Eco28_RS11550 IPR029016 GAF-like domain superfamily Eco28_RS11550 IPR003018 GAF domain Eco28_RS11550 IPR000160 GGDEF domain Eco28_RS11555 IPR005590 Protein of unknown function DUF333 Eco28_RS11560 IPR007438 Protein of unknown function DUF488 Eco28_RS11565 IPR004747 Cyanate transport system protein Eco28_RS11565 IPR020846 Major facilitator superfamily domain Eco28_RS11565 IPR036259 MFS transporter superfamily Eco28_RS11565 IPR011701 Major facilitator superfamily Eco28_RS11570 IPR009057 Homeobox-like domain superfamily Eco28_RS11570 IPR003313 AraC-type arabinose-binding/dimerisation domain Eco28_RS11570 IPR011051 RmlC-like cupin domain superfamily Eco28_RS11570 IPR014710 RmlC-like jelly roll fold Eco28_RS11570 IPR018062 HTH domain AraC-type, conserved site Eco28_RS11570 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS11575 IPR007382 Uncharacterised protein family UPF0756, transmembrame Eco28_RS11585 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain Eco28_RS11585 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily Eco28_RS11590 IPR033420 Gammaproteobacterial periplasmic sensor domain GAPES1 Eco28_RS11590 IPR029787 Nucleotide cyclase Eco28_RS11590 IPR000160 GGDEF domain Eco28_RS11595 IPR033424 Membrane-associated sensor domain Eco28_RS11595 IPR029787 Nucleotide cyclase Eco28_RS11595 IPR000160 GGDEF domain Eco28_RS11600 IPR006698 Uncharacterised protein family UPF0229 Eco28_RS11605 IPR016230 Serine-protein kinase, PrkA Eco28_RS11605 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS11605 IPR013153 PrkA AAA domain Eco28_RS11605 IPR010650 PrkA C-terminal domain Eco28_RS11610 IPR010583 MltA-interacting MipA Eco28_RS11615 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS11615 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS11615 IPR020471 Aldo/keto reductase Eco28_RS11620 IPR025532 Glucose-6-phosphate 1-epimerase Eco28_RS11620 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase Eco28_RS11620 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS11620 IPR014718 Glycoside hydrolase-type carbohydrate-binding Eco28_RS11625 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family Eco28_RS11625 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain Eco28_RS11625 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain Eco28_RS11625 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I Eco28_RS11625 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site Eco28_RS11625 IPR036291 NAD(P)-binding domain superfamily Eco28_RS11630 IPR002579 Peptide methionine sulphoxide reductase MrsB Eco28_RS11630 IPR028427 Peptide methionine sulfoxide reductase Eco28_RS11630 IPR011057 Mss4-like superfamily Eco28_RS11635 IPR009749 Protein of unknown function DUF1315 Eco28_RS11640 IPR036291 NAD(P)-binding domain superfamily Eco28_RS11640 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS11640 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS11640 IPR011032 GroES-like superfamily Eco28_RS11640 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS11645 IPR020846 Major facilitator superfamily domain Eco28_RS11645 IPR005828 Major facilitator, sugar transporter-like Eco28_RS11645 IPR036259 MFS transporter superfamily Eco28_RS11650 IPR011032 GroES-like superfamily Eco28_RS11650 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS11650 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS11650 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS11650 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS11650 IPR036291 NAD(P)-binding domain superfamily Eco28_RS11655 IPR013785 Aldolase-type TIM barrel Eco28_RS11655 IPR000771 Fructose-bisphosphate aldolase, class-II Eco28_RS11660 IPR029056 Ribokinase-like Eco28_RS11660 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS11660 IPR011611 Carbohydrate kinase PfkB Eco28_RS11660 IPR002139 Ribokinase/fructokinase Eco28_RS11665 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS11665 IPR020471 Aldo/keto reductase Eco28_RS11665 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS11670 IPR014036 DeoR C-terminal sensor domain Eco28_RS11670 IPR037171 NagB/RpiA transferase-like Eco28_RS11670 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS11670 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS11670 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS11670 IPR001034 DeoR-type HTH domain Eco28_RS11680 IPR020846 Major facilitator superfamily domain Eco28_RS11680 IPR036259 MFS transporter superfamily Eco28_RS11680 IPR005828 Major facilitator, sugar transporter-like Eco28_RS11685 IPR000868 Isochorismatase-like Eco28_RS11685 IPR036380 Isochorismatase-like superfamily Eco28_RS11690 IPR037152 L-asparaginase, N-terminal domain superfamily Eco28_RS11690 IPR027474 L-asparaginase, N-terminal Eco28_RS11690 IPR041725 Type I (cytosolic) L-asparaginase Eco28_RS11690 IPR027473 L-asparaginase, C-terminal Eco28_RS11690 IPR040919 Asparaginase/glutaminase, C-terminal Eco28_RS11690 IPR027475 Asparaginase/glutaminase, active site 2 Eco28_RS11690 IPR020827 Asparaginase/glutaminase, active site 1 Eco28_RS11690 IPR006034 Asparaginase/glutaminase-like Eco28_RS11690 IPR036152 Asparaginase/glutaminase-like superfamily Eco28_RS11690 IPR006033 Type I L-asparaginase family Eco28_RS11695 IPR002142 Peptidase S49 Eco28_RS11695 IPR033854 Signal peptide peptidase A Eco28_RS11695 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS11695 IPR004634 Peptidase S49, protease IV Eco28_RS11695 IPR004635 Peptidase S49, SppA Eco28_RS11705 IPR029479 Nitroreductase Eco28_RS11705 IPR000415 Nitroreductase-like Eco28_RS11705 IPR026021 Putative NAD(P)H nitroreductase YdjA-like Eco28_RS11715 IPR023061 Selenophosphate synthetase, class I Eco28_RS11715 IPR036921 PurM-like, N-terminal domain superfamily Eco28_RS11715 IPR016188 PurM-like, N-terminal domain Eco28_RS11715 IPR010918 PurM-like, C-terminal domain Eco28_RS11715 IPR036676 PurM-like, C-terminal domain superfamily Eco28_RS11715 IPR004536 Selenophosphate synthetase Eco28_RS11720 IPR005738 DNA topoisomerase III Eco28_RS11720 IPR006171 TOPRIM domain Eco28_RS11720 IPR003601 DNA topoisomerase, type IA, domain 2 Eco28_RS11720 IPR034144 DNA topoisomerase 3-like, TOPRIM domain Eco28_RS11720 IPR023406 DNA topoisomerase, type IA, active site Eco28_RS11720 IPR013497 DNA topoisomerase, type IA, central Eco28_RS11720 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Eco28_RS11720 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Eco28_RS11720 IPR000380 DNA topoisomerase, type IA Eco28_RS11720 IPR003602 DNA topoisomerase, type IA, DNA-binding domain Eco28_RS11720 IPR023405 DNA topoisomerase, type IA, core domain Eco28_RS11720 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Eco28_RS11725 IPR009677 Protein of unknown function DUF1266 Eco28_RS11730 IPR014362 Glutamate dehydrogenase Eco28_RS11730 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal Eco28_RS11730 IPR033524 Leu/Phe/Val dehydrogenases active site Eco28_RS11730 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase Eco28_RS11730 IPR036291 NAD(P)-binding domain superfamily Eco28_RS11730 IPR033922 NAD(P) binding domain of glutamate dehydrogenase Eco28_RS11730 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain Eco28_RS11735 IPR009971 Protein of unknown function DUF1496 Eco28_RS11740 IPR020084 NUDIX hydrolase, conserved site Eco28_RS11740 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS11740 IPR020476 NUDIX hydrolase Eco28_RS11740 IPR000086 NUDIX hydrolase domain Eco28_RS11745 IPR000462 CDP-alcohol phosphatidyltransferase Eco28_RS11750 IPR001307 Thiosulphate sulfurtransferase, conserved site Eco28_RS11750 IPR036873 Rhodanese-like domain superfamily Eco28_RS11750 IPR001763 Rhodanese-like domain Eco28_RS11755 IPR003439 ABC transporter-like Eco28_RS11755 IPR017871 ABC transporter, conserved site Eco28_RS11755 IPR003593 AAA+ ATPase domain Eco28_RS11755 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS11760 IPR035906 MetI-like superfamily Eco28_RS11760 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS11765 IPR006059 Bacterial extracellular solute-binding protein Eco28_RS11765 IPR027020 Protein ynjB Eco28_RS11770 IPR003779 Carboxymuconolactone decarboxylase-like Eco28_RS11770 IPR029032 AhpD-like Eco28_RS11775 IPR015414 Transmembrane protein TMEM64 Eco28_RS11775 IPR032816 SNARE associated Golgi protein Eco28_RS11780 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS11785 IPR032816 SNARE associated Golgi protein Eco28_RS11790 IPR037493 Exodeoxyribonuclease III-like Eco28_RS11790 IPR005135 Endonuclease/exonuclease/phosphatase Eco28_RS11790 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Eco28_RS11790 IPR020848 AP endonuclease 1, conserved site Eco28_RS11790 IPR020847 AP endonuclease 1, binding site Eco28_RS11790 IPR004808 AP endonuclease 1 Eco28_RS11795 IPR005814 Aminotransferase class-III Eco28_RS11795 IPR004636 Acetylornithine/Succinylornithine transaminase family Eco28_RS11795 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS11795 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS11795 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS11795 IPR026330 Succinylornithine transaminase Eco28_RS11795 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria Eco28_RS11800 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS11800 IPR007041 Arginine N-succinyltransferase AstA/AruG Eco28_RS11800 IPR017650 Arginine N-succinyltransferase Eco28_RS11805 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS11805 IPR016160 Aldehyde dehydrogenase, cysteine active site Eco28_RS11805 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Eco28_RS11805 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS11805 IPR015590 Aldehyde dehydrogenase domain Eco28_RS11805 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS11805 IPR017649 Succinylglutamate-semialdehyde dehydrogenase Eco28_RS11810 IPR007079 Succinylarginine dihydrolase Eco28_RS11810 IPR037031 Succinylarginine dihydrolase superfamily Eco28_RS11815 IPR016681 Succinylglutamate desuccinylase Eco28_RS11815 IPR007036 Succinylglutamate desuccinylase/aspartoacylase Eco28_RS11820 IPR012899 LTXXQ motif family protein Eco28_RS11825 IPR023482 Uncharacterised protein family Ves Eco28_RS11825 IPR010282 Uncharacterised protein family HutD/Ves Eco28_RS11825 IPR011051 RmlC-like cupin domain superfamily Eco28_RS11825 IPR014710 RmlC-like jelly roll fold Eco28_RS11830 IPR035901 GIY-YIG endonuclease superfamily Eco28_RS11830 IPR000305 GIY-YIG endonuclease Eco28_RS11835 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS11835 IPR022926 NH(3)-dependent NAD(+) synthetase Eco28_RS11835 IPR003694 NAD(+) synthetase Eco28_RS11835 IPR022310 NAD/GMP synthase Eco28_RS11840 IPR037873 BamE-like Eco28_RS11840 IPR007450 Lipoprotein SmpA/OmlA Eco28_RS11850 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS11850 IPR036095 PTS system IIB component-like superfamily Eco28_RS11850 IPR013012 Phosphotransferase system, EIIB component, type 3 Eco28_RS11855 IPR003352 Phosphotransferase system, EIIC Eco28_RS11855 IPR004501 Phosphotransferase system, EIIC component, type 3 Eco28_RS11855 IPR004796 Phosphotransferase system, cellobiose-type IIC component Eco28_RS11860 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit Eco28_RS11860 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily Eco28_RS11865 IPR014710 RmlC-like jelly roll fold Eco28_RS11865 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS11865 IPR011051 RmlC-like cupin domain superfamily Eco28_RS11865 IPR018062 HTH domain AraC-type, conserved site Eco28_RS11865 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS11865 IPR009057 Homeobox-like domain superfamily Eco28_RS11865 IPR013096 Cupin 2, conserved barrel Eco28_RS11870 IPR019802 Glycoside hydrolase, family 4, conserved site Eco28_RS11870 IPR022616 Glycosyl hydrolase, family 4, C-terminal Eco28_RS11870 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Eco28_RS11870 IPR036291 NAD(P)-binding domain superfamily Eco28_RS11870 IPR001088 Glycoside hydrolase, family 4 Eco28_RS11875 IPR022948 Chitooligosaccharide deacetylase ChbG-like, bacteria Eco28_RS11875 IPR006879 Carbohydrate deacetylase YdjC-like Eco28_RS11875 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Eco28_RS11880 IPR011614 Catalase core domain Eco28_RS11880 IPR024712 Catalase, mono-functional, haem-containing, clade 2 Eco28_RS11880 IPR024708 Catalase active site Eco28_RS11880 IPR018028 Catalase, mono-functional, haem-containing Eco28_RS11880 IPR041399 Large catalase, C-terminal domain Eco28_RS11880 IPR020835 Catalase superfamily Eco28_RS11880 IPR029062 Class I glutamine amidotransferase-like Eco28_RS11880 IPR037060 Catalase core domain superfamily Eco28_RS11880 IPR002226 Catalase haem-binding site Eco28_RS11880 IPR010582 Catalase immune-responsive domain Eco28_RS11885 IPR019666 Cell division activator CedA Eco28_RS11885 IPR038463 CedA-like superfamily Eco28_RS11895 IPR036458 Sodium:dicarboxylate symporter superfamily Eco28_RS11895 IPR001991 Sodium:dicarboxylate symporter Eco28_RS11900 IPR016956 Inner membrane protein YdjM Eco28_RS11900 IPR007404 LexA-binding, inner membrane-associated putative hydrolase Eco28_RS11905 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS11905 IPR006439 HAD hydrolase, subfamily IA Eco28_RS11905 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Eco28_RS11905 IPR023214 HAD superfamily Eco28_RS11905 IPR036412 HAD-like superfamily Eco28_RS11910 IPR025229 YniB-like protein Eco28_RS11915 IPR011009 Protein kinase-like domain superfamily Eco28_RS11915 IPR016477 Fructosamine/Ketosamine-3-kinase Eco28_RS11920 IPR022597 Endoribonuclease antitoxin GhoS Eco28_RS11920 IPR038241 Endoribonuclease antitoxin GhoS superfamily Eco28_RS11925 IPR017583 Tagatose/fructose phosphokinase Eco28_RS11925 IPR029056 Ribokinase-like Eco28_RS11925 IPR011611 Carbohydrate kinase PfkB Eco28_RS11925 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS11930 IPR007433 Protein of unknown function DUF481 Eco28_RS11945 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily Eco28_RS11945 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS11945 IPR004154 Anticodon-binding Eco28_RS11945 IPR036621 Anticodon-binding domain superfamily Eco28_RS11945 IPR012675 Beta-grasp domain superfamily Eco28_RS11945 IPR033728 Threonine-tRNA ligase catalytic core domain Eco28_RS11945 IPR012947 Threonyl/alanyl tRNA synthetase, SAD Eco28_RS11945 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Eco28_RS11945 IPR002320 Threonine-tRNA ligase, class IIa Eco28_RS11945 IPR012676 TGS-like Eco28_RS11945 IPR004095 TGS Eco28_RS11950 IPR001288 Translation initiation factor 3 Eco28_RS11950 IPR019815 Translation initiation factor 3, C-terminal Eco28_RS11950 IPR019813 Translation initiation factor 3, conserved site Eco28_RS11950 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily Eco28_RS11950 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily Eco28_RS11950 IPR019814 Translation initiation factor 3, N-terminal Eco28_RS11955 IPR001706 Ribosomal protein L35, non-mitochondrial Eco28_RS11955 IPR021137 Ribosomal protein L35 Eco28_RS11955 IPR037229 Ribosomal protein L35 superfamily Eco28_RS11955 IPR018265 Ribosomal protein L35, conserved site Eco28_RS11960 IPR005813 Ribosomal protein L20 Eco28_RS11960 IPR035566 Ribosomal protein L20, C-terminal Eco28_RS11965 IPR002319 Phenylalanyl-tRNA synthetase Eco28_RS11965 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS11965 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit Eco28_RS11965 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal Eco28_RS11965 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial Eco28_RS11965 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm Eco28_RS11970 IPR009061 Putative DNA-binding domain superfamily Eco28_RS11970 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain Eco28_RS11970 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain Eco28_RS11970 IPR005146 B3/B4 tRNA-binding domain Eco28_RS11970 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS11970 IPR005147 tRNA synthetase, B5-domain Eco28_RS11970 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 Eco28_RS11970 IPR002547 tRNA-binding domain Eco28_RS11970 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit Eco28_RS11970 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily Eco28_RS11970 IPR005121 Ferrodoxin-fold anticodon-binding domain Eco28_RS11975 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily Eco28_RS11975 IPR020816 Histone-like DNA-binding protein, conserved site Eco28_RS11975 IPR000119 Histone-like DNA-binding protein Eco28_RS11975 IPR005684 Integration host factor, alpha subunit Eco28_RS11980 IPR023691 ABC transporter, vitamin B12 import, permease protein BtuC Eco28_RS11980 IPR037294 ABC transporter, BtuC-like Eco28_RS11980 IPR000522 ABC transporter, permease protein, BtuC-like Eco28_RS11985 IPR033674 Thioredoxin/glutathione peroxidase BtuE Eco28_RS11985 IPR029759 Glutathione peroxidase active site Eco28_RS11985 IPR029760 Glutathione peroxidase conserved site Eco28_RS11985 IPR036249 Thioredoxin-like superfamily Eco28_RS11985 IPR000889 Glutathione peroxidase Eco28_RS11990 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS11990 IPR023693 ABC transporter, vitamin B12, BtuD Eco28_RS11990 IPR003593 AAA+ ATPase domain Eco28_RS11990 IPR017871 ABC transporter, conserved site Eco28_RS11990 IPR003439 ABC transporter-like Eco28_RS11995 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS11995 IPR000064 Endopeptidase, NLPC/P60 domain Eco28_RS12000 IPR001633 EAL domain Eco28_RS12000 IPR035919 EAL domain superfamily Eco28_RS12005 IPR003846 Protein adenylyltransferase SelO Eco28_RS12010 IPR019600 Hemin uptake protein HemP Eco28_RS12015 IPR006219 DHAP synthase, class 1 Eco28_RS12015 IPR006218 DAHP synthetase I/KDSA Eco28_RS12015 IPR013785 Aldolase-type TIM barrel Eco28_RS12020 IPR005177 Bifunctional kinase-pyrophosphorylase Eco28_RS12020 IPR026530 Phosphoenolpyruvate synthase regulatory protein Eco28_RS12030 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS12030 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS12030 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding Eco28_RS12030 IPR036637 Phosphohistidine domain superfamily Eco28_RS12030 IPR023151 PEP-utilising enzyme, conserved site Eco28_RS12030 IPR000121 PEP-utilising enzyme, C-terminal Eco28_RS12030 IPR018274 PEP-utilising enzyme, active site Eco28_RS12030 IPR006319 Phosphoenolpyruvate synthase Eco28_RS12030 IPR008279 PEP-utilising enzyme, mobile domain Eco28_RS12030 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS12035 IPR030676 Citrate carrier CitT-related Eco28_RS12035 IPR001898 Solute carrier family 13 Eco28_RS12040 IPR036291 NAD(P)-binding domain superfamily Eco28_RS12040 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Eco28_RS12040 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Eco28_RS12040 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS12055 IPR036291 NAD(P)-binding domain superfamily Eco28_RS12055 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS12055 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS12060 IPR025110 AMP-binding enzyme, C-terminal domain Eco28_RS12060 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS12060 IPR020845 AMP-binding, conserved site Eco28_RS12060 IPR000873 AMP-dependent synthetase/ligase Eco28_RS12065 IPR012206 Ferredoxin-like, FixX Eco28_RS12065 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS12070 IPR039651 Protein FixC-like Eco28_RS12070 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS12070 IPR002938 FAD-binding domain Eco28_RS12075 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS12075 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS12075 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Eco28_RS12075 IPR001308 Electron transfer flavoprotein alpha subunit/FixB Eco28_RS12075 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Eco28_RS12075 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Eco28_RS12080 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site Eco28_RS12080 IPR012255 Electron transfer flavoprotein, beta subunit Eco28_RS12080 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Eco28_RS12080 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS12080 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal Eco28_RS12090 IPR003313 AraC-type arabinose-binding/dimerisation domain Eco28_RS12090 IPR009057 Homeobox-like domain superfamily Eco28_RS12090 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS12090 IPR014710 RmlC-like jelly roll fold Eco28_RS12090 IPR011051 RmlC-like cupin domain superfamily Eco28_RS12095 IPR006089 Acyl-CoA dehydrogenase, conserved site Eco28_RS12095 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily Eco28_RS12095 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain Eco28_RS12095 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily Eco28_RS12095 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal Eco28_RS12095 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal Eco28_RS12095 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal Eco28_RS12100 IPR014388 3-oxoacid CoA-transferase Eco28_RS12100 IPR004165 Coenzyme A transferase family I Eco28_RS12100 IPR037171 NagB/RpiA transferase-like Eco28_RS12105 IPR001381 3-dehydroquinate dehydratase type I Eco28_RS12105 IPR013785 Aldolase-type TIM barrel Eco28_RS12105 IPR018508 3-dehydroquinate dehydratase, active site Eco28_RS12110 IPR036291 NAD(P)-binding domain superfamily Eco28_RS12110 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal Eco28_RS12110 IPR041121 SDH, C-terminal Eco28_RS12110 IPR022872 Quinate/Shikimate dehydrogenase Eco28_RS12110 IPR022893 Shikimate dehydrogenase family Eco28_RS12115 IPR036259 MFS transporter superfamily Eco28_RS12115 IPR011701 Major facilitator superfamily Eco28_RS12115 IPR020846 Major facilitator superfamily domain Eco28_RS12125 IPR020846 Major facilitator superfamily domain Eco28_RS12125 IPR036259 MFS transporter superfamily Eco28_RS12125 IPR011701 Major facilitator superfamily Eco28_RS12130 IPR005829 Sugar transporter, conserved site Eco28_RS12130 IPR036259 MFS transporter superfamily Eco28_RS12130 IPR020846 Major facilitator superfamily domain Eco28_RS12130 IPR011701 Major facilitator superfamily Eco28_RS12135 IPR015060 Protein of unknown function DUF1870 Eco28_RS12135 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS12135 IPR027910 YdiL domain superfamily Eco28_RS12145 IPR027910 YdiL domain superfamily Eco28_RS12145 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS12145 IPR015060 Protein of unknown function DUF1870 Eco28_RS12155 IPR002549 Transmembrane protein TqsA-like Eco28_RS12160 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS12160 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS12160 IPR016166 FAD-binding domain, PCMH-type Eco28_RS12160 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS12160 IPR016164 FAD-linked oxidase-like, C-terminal Eco28_RS12160 IPR004113 FAD-linked oxidase, C-terminal Eco28_RS12160 IPR009051 Alpha-helical ferredoxin Eco28_RS12160 IPR006094 FAD linked oxidase, N-terminal Eco28_RS12165 IPR003736 Phenylacetic acid degradation-related domain Eco28_RS12165 IPR030863 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, MenI Eco28_RS12165 IPR006683 Thioesterase domain Eco28_RS12165 IPR029069 HotDog domain superfamily Eco28_RS12170 IPR031830 Uncharacterised protein YdiH Eco28_RS12175 IPR000361 FeS cluster biogenesis Eco28_RS12175 IPR016092 FeS cluster insertion protein Eco28_RS12175 IPR017870 FeS cluster insertion, C-terminal, conserved site Eco28_RS12175 IPR011298 FeS assembly scaffold SufA Eco28_RS12175 IPR035903 HesB-like domain superfamily Eco28_RS12180 IPR037284 SUF system FeS cluster assembly, SufBD superfamily Eco28_RS12180 IPR000825 SUF system FeS cluster assembly, SufBD Eco28_RS12180 IPR010231 SUF system FeS cluster assembly, SufB Eco28_RS12185 IPR003593 AAA+ ATPase domain Eco28_RS12185 IPR003439 ABC transporter-like Eco28_RS12185 IPR010230 FeS cluster assembly SUF system, ATPase SufC Eco28_RS12185 IPR017871 ABC transporter, conserved site Eco28_RS12185 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS12190 IPR011542 SUF system FeS cluster assembly, SufD Eco28_RS12190 IPR000825 SUF system FeS cluster assembly, SufBD Eco28_RS12190 IPR037284 SUF system FeS cluster assembly, SufBD superfamily Eco28_RS12195 IPR000192 Aminotransferase class V domain Eco28_RS12195 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS12195 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS12195 IPR010970 Cysteine desulfurase, SufS Eco28_RS12195 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS12195 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Eco28_RS12200 IPR003808 Fe-S metabolism associated domain, SufE-like Eco28_RS12200 IPR023939 Cysteine desulfuration protein SufE Eco28_RS12205 IPR038063 L,D-transpeptidase catalytic domain-like Eco28_RS12205 IPR018392 LysM domain Eco28_RS12205 IPR041597 L,D-transpeptidase C-terminal domain Eco28_RS12205 IPR005490 L,D-transpeptidase catalytic domain Eco28_RS12210 IPR006817 Lipoprotein leucine-zipper Eco28_RS12210 IPR016367 Murein-lipoprotein Eco28_RS12215 IPR011037 Pyruvate kinase-like, insert domain superfamily Eco28_RS12215 IPR015806 Pyruvate kinase, insert domain superfamily Eco28_RS12215 IPR036918 Pyruvate kinase, C-terminal domain superfamily Eco28_RS12215 IPR015795 Pyruvate kinase, C-terminal Eco28_RS12215 IPR015793 Pyruvate kinase, barrel Eco28_RS12215 IPR001697 Pyruvate kinase Eco28_RS12215 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS12215 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS12215 IPR018209 Pyruvate kinase, active site Eco28_RS12220 IPR024493 Fumarase D Eco28_RS12225 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS12225 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS12230 IPR036021 Aldehyde ferredoxin oxidoreductase-like, C-terminal Eco28_RS12230 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 Eco28_RS12230 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal Eco28_RS12230 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily Eco28_RS12230 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 Eco28_RS12230 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal Eco28_RS12240 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS12240 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS12245 IPR016174 Di-haem cytochrome, transmembrane Eco28_RS12245 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Eco28_RS12255 IPR038732 FAD-dependent urate hydroxylase HpyO, FAD/NAD(P)-binding domain Eco28_RS12255 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS12260 IPR011008 Dimeric alpha-beta barrel Eco28_RS12260 IPR014910 Putative monooxygenase YdhR Eco28_RS12275 IPR030930 Adhesin of bacterial autotransporter system Eco28_RS12275 IPR012332 P22 tailspike-like, C-terminal domain superfamily Eco28_RS12275 IPR011050 Pectin lyase fold/virulence factor Eco28_RS12275 IPR004899 Pertactin, central region Eco28_RS12280 IPR002528 Multi antimicrobial extrusion protein Eco28_RS12280 IPR022913 Multidrug resistance protein MdtK Eco28_RS12285 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily Eco28_RS12285 IPR026017 Lumazine-binding domain Eco28_RS12285 IPR017938 Riboflavin synthase-like beta-barrel Eco28_RS12285 IPR001783 Lumazine-binding protein Eco28_RS12290 IPR003333 Mycolic acid cyclopropane synthase Eco28_RS12290 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS12295 IPR011701 Major facilitator superfamily Eco28_RS12295 IPR036259 MFS transporter superfamily Eco28_RS12295 IPR004812 Drug resistance transporter Bcr/CmlA subfamily Eco28_RS12295 IPR020846 Major facilitator superfamily domain Eco28_RS12300 IPR005119 LysR, substrate-binding Eco28_RS12300 IPR000847 Transcription regulator HTH, LysR Eco28_RS12300 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS12300 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS12305 IPR023588 Transcription regulator HTH, PurR Eco28_RS12305 IPR000843 LacI-type HTH domain Eco28_RS12305 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS12305 IPR028082 Periplasmic binding protein-like I Eco28_RS12320 IPR036259 MFS transporter superfamily Eco28_RS12320 IPR020846 Major facilitator superfamily domain Eco28_RS12320 IPR011701 Major facilitator superfamily Eco28_RS12325 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily Eco28_RS12325 IPR019832 Manganese/iron superoxide dismutase, C-terminal Eco28_RS12325 IPR019833 Manganese/iron superoxide dismutase, binding site Eco28_RS12325 IPR019831 Manganese/iron superoxide dismutase, N-terminal Eco28_RS12325 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily Eco28_RS12325 IPR001189 Manganese/iron superoxide dismutase Eco28_RS12330 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS12330 IPR000064 Endopeptidase, NLPC/P60 domain Eco28_RS12335 IPR004480 Monothiol glutaredoxin-related Eco28_RS12335 IPR036249 Thioredoxin-like superfamily Eco28_RS12335 IPR002109 Glutaredoxin Eco28_RS12335 IPR033658 Glutaredoxin, PICOT-like Eco28_RS12335 IPR014434 Monothiol glutaredoxin Eco28_RS12340 IPR011545 DEAD/DEAH box helicase domain Eco28_RS12340 IPR013701 DEAD/H associated Eco28_RS12340 IPR003593 AAA+ ATPase domain Eco28_RS12340 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS12340 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS12340 IPR001650 Helicase, C-terminal Eco28_RS12345 IPR013520 Exonuclease, RNase T/DNA polymerase III Eco28_RS12345 IPR005987 Ribonuclease T Eco28_RS12345 IPR012337 Ribonuclease H-like superfamily Eco28_RS12345 IPR036397 Ribonuclease H superfamily Eco28_RS12350 IPR018146 Glyoxalase I, conserved site Eco28_RS12350 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Eco28_RS12350 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Eco28_RS12350 IPR004361 Glyoxalase I Eco28_RS12350 IPR037523 Vicinal oxygen chelate (VOC) domain Eco28_RS12355 IPR013785 Aldolase-type TIM barrel Eco28_RS12355 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal Eco28_RS12360 IPR009057 Homeobox-like domain superfamily Eco28_RS12360 IPR011075 Tetracyclin repressor-like, C-terminal domain Eco28_RS12360 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS12360 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS12365 IPR010710 Protein of unknown function DUF1289 Eco28_RS12370 IPR020471 Aldo/keto reductase Eco28_RS12370 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS12370 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS12375 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily Eco28_RS12375 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone Eco28_RS12375 IPR018152 Superoxide dismutase, copper/zinc, binding site Eco28_RS12375 IPR001424 Superoxide dismutase, copper/zinc binding domain Eco28_RS12380 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein Eco28_RS12385 IPR006143 RND efflux pump, membrane fusion protein Eco28_RS12385 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS12390 IPR012451 Protein of unknown function DUF1656 Eco28_RS12395 IPR023071 Transcriptional regulator, SlyA Eco28_RS12395 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS12395 IPR000835 MarR-type HTH domain Eco28_RS12395 IPR023187 Transcriptional regulator MarR-type, conserved site Eco28_RS12395 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS12400 IPR008816 Glycine zipper 2TM domain Eco28_RS12405 IPR005338 Anhydro-N-acetylmuramic acid kinase Eco28_RS12410 IPR018660 C-type lysozyme inhibitor Eco28_RS12410 IPR036328 C-type lysozyme inhibitor superfamily Eco28_RS12415 IPR012349 FMN-binding split barrel Eco28_RS12415 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site Eco28_RS12415 IPR000659 Pyridoxamine 5'-phosphate oxidase Eco28_RS12415 IPR011576 Pyridoxamine 5'-phosphate oxidase, putative Eco28_RS12415 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal Eco28_RS12420 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS12420 IPR002305 Aminoacyl-tRNA synthetase, class Ic Eco28_RS12420 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 Eco28_RS12420 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Eco28_RS12420 IPR002307 Tyrosine-tRNA ligase Eco28_RS12420 IPR036986 RNA-binding S4 domain superfamily Eco28_RS12420 IPR002942 RNA-binding S4 domain Eco28_RS12420 IPR024088 Tyrosine-tRNA ligase, bacterial-type Eco28_RS12425 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Eco28_RS12425 IPR004625 Pyridoxine kinase Eco28_RS12425 IPR029056 Ribokinase-like Eco28_RS12425 IPR023685 Pyridoxal kinase PdxY Eco28_RS12430 IPR040079 Glutathione Transferase family Eco28_RS12430 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Eco28_RS12430 IPR036249 Thioredoxin-like superfamily Eco28_RS12430 IPR010987 Glutathione S-transferase, C-terminal-like Eco28_RS12430 IPR004046 Glutathione S-transferase, C-terminal Eco28_RS12430 IPR004045 Glutathione S-transferase, N-terminal Eco28_RS12435 IPR020846 Major facilitator superfamily domain Eco28_RS12435 IPR005279 Dipeptide/tripeptide permease Eco28_RS12435 IPR023517 Amino acid/peptide transporter family, dipeptide and tripeptide permease A Eco28_RS12435 IPR036259 MFS transporter superfamily Eco28_RS12435 IPR000109 Proton-dependent oligopeptide transporter family Eco28_RS12435 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site Eco28_RS12445 IPR011257 DNA glycosylase Eco28_RS12445 IPR005759 Endonuclease III Eco28_RS12445 IPR003265 HhH-GPD domain Eco28_RS12445 IPR004035 Endonuclease III, iron-sulphur binding site Eco28_RS12445 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif Eco28_RS12445 IPR004036 Endonuclease III-like, conserved site-2 Eco28_RS12445 IPR000445 Helix-hairpin-helix motif Eco28_RS12445 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Eco28_RS12450 IPR010968 Ion-translocating oxidoreductase complex subunit E Eco28_RS12450 IPR003667 NqrDE/RnfAE Eco28_RS12455 IPR007329 FMN-binding Eco28_RS12455 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG Eco28_RS12460 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D Eco28_RS12460 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD Eco28_RS12465 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS12465 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS12465 IPR009051 Alpha-helical ferredoxin Eco28_RS12465 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Eco28_RS12465 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Eco28_RS12465 IPR026902 RnfC Barrel sandwich hybrid domain Eco28_RS12465 IPR019554 Soluble ligand binding domain Eco28_RS12465 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC Eco28_RS12475 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC Eco28_RS12475 IPR019554 Soluble ligand binding domain Eco28_RS12475 IPR026902 RnfC Barrel sandwich hybrid domain Eco28_RS12475 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Eco28_RS12475 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Eco28_RS12475 IPR009051 Alpha-helical ferredoxin Eco28_RS12475 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS12475 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS12480 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB Eco28_RS12480 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS12480 IPR016463 Electron transport complex, RnfB/RsxB, Proteobacteria Eco28_RS12480 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS12480 IPR007202 4Fe-4S domain Eco28_RS12485 IPR003667 NqrDE/RnfAE Eco28_RS12485 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA Eco28_RS12490 IPR019690 Protein of unknown function DUF2569 Eco28_RS12495 IPR007985 Haemolysin expression modulating, HHA Eco28_RS12495 IPR036666 HHA superfamily Eco28_RS12510 IPR036291 NAD(P)-binding domain superfamily Eco28_RS12510 IPR000683 Oxidoreductase, N-terminal Eco28_RS12510 IPR004104 Oxidoreductase, C-terminal Eco28_RS12515 IPR028893 Adenosine deaminase Eco28_RS12515 IPR006330 Adenosine/adenine deaminase Eco28_RS12515 IPR032466 Metal-dependent hydrolase Eco28_RS12515 IPR006650 Adenosine/AMP deaminase active site Eco28_RS12515 IPR001365 Adenosine/AMP deaminase domain Eco28_RS12520 IPR027619 Putative C-S lyase Eco28_RS12520 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS12520 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS12520 IPR004839 Aminotransferase, class I/classII Eco28_RS12520 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS12525 IPR013013 Phosphotransferase system, EIIC component, type 1 Eco28_RS12525 IPR036878 Glucose permease domain IIB Eco28_RS12525 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Eco28_RS12525 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Eco28_RS12525 IPR011301 PTS system, maltose/glucose-specific IIBC component Eco28_RS12525 IPR001996 Phosphotransferase system, IIB component, type 1 Eco28_RS12525 IPR003352 Phosphotransferase system, EIIC Eco28_RS12530 IPR001761 Periplasmic binding protein/LacI sugar binding domain Eco28_RS12530 IPR000843 LacI-type HTH domain Eco28_RS12530 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS12530 IPR028082 Periplasmic binding protein-like I Eco28_RS12535 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS12535 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS12535 IPR036291 NAD(P)-binding domain superfamily Eco28_RS12540 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS12540 IPR009057 Homeobox-like domain superfamily Eco28_RS12540 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS12540 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS12545 IPR013783 Immunoglobulin-like fold Eco28_RS12545 IPR006104 Glycosyl hydrolases family 2, sugar binding domain Eco28_RS12545 IPR017853 Glycoside hydrolase superfamily Eco28_RS12545 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich Eco28_RS12545 IPR023230 Glycoside hydrolase, family 2, conserved site Eco28_RS12545 IPR006103 Glycoside hydrolase family 2, catalytic domain Eco28_RS12545 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily Eco28_RS12545 IPR006101 Glycoside hydrolase, family 2 Eco28_RS12545 IPR008979 Galactose-binding-like domain superfamily Eco28_RS12545 IPR023232 Glycoside hydrolase, family 2, active site Eco28_RS12550 IPR036259 MFS transporter superfamily Eco28_RS12550 IPR001927 Sodium:galactoside symporter Eco28_RS12550 IPR018043 Sodium:galactoside symporter, conserved site Eco28_RS12550 IPR039672 Lactose permease-like Eco28_RS12555 IPR005318 Outer membrane porin, bacterial Eco28_RS12555 IPR023614 Porin domain superfamily Eco28_RS12560 IPR010352 Protein of unknown function DUF945 Eco28_RS12565 IPR001250 Mannose-6-phosphate isomerase, type I Eco28_RS12565 IPR011051 RmlC-like cupin domain superfamily Eco28_RS12565 IPR014710 RmlC-like jelly roll fold Eco28_RS12565 IPR018050 Phosphomannose isomerase, type I, conserved site Eco28_RS12565 IPR016305 Mannose-6-phosphate isomerase Eco28_RS12570 IPR011167 Iron-dependent fumarate hydratase Eco28_RS12570 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain Eco28_RS12570 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain Eco28_RS12570 IPR020557 Fumarate lyase, conserved site Eco28_RS12570 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily Eco28_RS12575 IPR005677 Fumarate hydratase, class II Eco28_RS12575 IPR018951 Fumarase C, C-terminal Eco28_RS12575 IPR024083 Fumarase/histidase, N-terminal Eco28_RS12575 IPR022761 Fumarate lyase, N-terminal Eco28_RS12575 IPR000362 Fumarate lyase family Eco28_RS12575 IPR020557 Fumarate lyase, conserved site Eco28_RS12575 IPR008948 L-Aspartase-like Eco28_RS12580 IPR036384 Replication terminator Tus superfamily Eco28_RS12580 IPR008865 DNA replication terminus site-binding protein Eco28_RS12580 IPR036381 Replication terminator Tus, domain 1 Eco28_RS12585 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS12585 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS12585 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS12585 IPR003660 HAMP domain Eco28_RS12585 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS12585 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS12585 IPR005467 Histidine kinase domain Eco28_RS12590 IPR011006 CheY-like superfamily Eco28_RS12590 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS12590 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS12590 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS12590 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS12590 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS12595 IPR009707 Membrane protein GlpM/YdgC Eco28_RS12600 IPR036291 NAD(P)-binding domain superfamily Eco28_RS12600 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS12600 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS12605 IPR004754 Amino acid antiporter Eco28_RS12605 IPR002293 Amino acid/polyamine transporter I Eco28_RS12615 IPR025543 Dodecin-like Eco28_RS12615 IPR010854 Domain of unknown function DUF1471 Eco28_RS12615 IPR036275 YdgH-like superfamily Eco28_RS12615 IPR025539 YdgH protein Eco28_RS12620 IPR036291 NAD(P)-binding domain superfamily Eco28_RS12620 IPR026255 NAD(P) transhydrogenase, alpha subunit Eco28_RS12620 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Eco28_RS12620 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 Eco28_RS12620 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 Eco28_RS12620 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain Eco28_RS12620 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal Eco28_RS12625 IPR034300 NADP transhydrogenase beta-like domain Eco28_RS12625 IPR012136 NADP transhydrogenase, beta subunit Eco28_RS12625 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS12630 IPR002549 Transmembrane protein TqsA-like Eco28_RS12635 IPR000390 Small multidrug resistance protein family Eco28_RS12635 IPR023740 Spermidine export protein MdtJ Eco28_RS12640 IPR000390 Small multidrug resistance protein family Eco28_RS12640 IPR023737 Spermidine export protein MdtI Eco28_RS12645 IPR009003 Peptidase S1, PA clan Eco28_RS12645 IPR008256 Peptidase S1B Eco28_RS12645 IPR018114 Serine proteases, trypsin family, histidine active site Eco28_RS12645 IPR001254 Serine proteases, trypsin domain Eco28_RS12645 IPR033116 Serine proteases, trypsin family, serine active site Eco28_RS12665 IPR005829 Sugar transporter, conserved site Eco28_RS12665 IPR020846 Major facilitator superfamily domain Eco28_RS12665 IPR036259 MFS transporter superfamily Eco28_RS12665 IPR011701 Major facilitator superfamily Eco28_RS12670 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS12670 IPR005119 LysR, substrate-binding Eco28_RS12670 IPR000847 Transcription regulator HTH, LysR Eco28_RS12670 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS12675 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS12675 IPR000600 ROK family Eco28_RS12675 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS12680 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS12680 IPR004472 Dethiobiotin synthase BioD Eco28_RS12685 IPR014743 Chloride channel, core Eco28_RS12685 IPR001807 Chloride channel, voltage gated Eco28_RS12685 IPR023790 Chloride channel, voltage-gated, ClcB Eco28_RS12690 IPR026269 Tat proofreading chaperone DmsD-type Eco28_RS12690 IPR036411 TorD-like superfamily Eco28_RS12690 IPR028611 Tat proofreading chaperone DmsD Eco28_RS12690 IPR020945 DMSO/Nitrate reductase chaperone Eco28_RS12695 IPR007059 DMSO reductase anchor subunit (DmsC) Eco28_RS12700 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS12700 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS12700 IPR014297 Dimethylsulphoxide reductase, chain B Eco28_RS12705 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS12705 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS12705 IPR006656 Molybdopterin oxidoreductase Eco28_RS12705 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS12705 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS12705 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site Eco28_RS12705 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS12705 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE Eco28_RS12710 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS12710 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE Eco28_RS12710 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS12710 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS12710 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS12710 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS12710 IPR006656 Molybdopterin oxidoreductase Eco28_RS12715 IPR010595 Protein of unknown function DUF1161 Eco28_RS12720 IPR010646 Uncharacterised protein family UPF0257 Eco28_RS12725 IPR000182 GNAT domain Eco28_RS12725 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS12730 IPR009700 Protein of unknown function DUF1283 Eco28_RS12735 IPR003844 Uncharacterised protein family UPF0060 Eco28_RS12745 IPR029065 Enolase C-terminal domain-like Eco28_RS12745 IPR034589 D-mannonate dehydratase-like Eco28_RS12745 IPR036849 Enolase-like, C-terminal domain superfamily Eco28_RS12745 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Eco28_RS12745 IPR029017 Enolase-like, N-terminal Eco28_RS12745 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site Eco28_RS12745 IPR034593 Mandelate racemase-like Eco28_RS12745 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Eco28_RS12750 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS12750 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS12750 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS12750 IPR036291 NAD(P)-binding domain superfamily Eco28_RS12750 IPR011032 GroES-like superfamily Eco28_RS12760 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS12760 IPR022000 Min27-like integrase, DNA-binding domain Eco28_RS12760 IPR010998 Integrase/recombinase, N-terminal Eco28_RS12760 IPR002104 Integrase, catalytic domain Eco28_RS12760 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS12775 IPR009954 Protein of unknown function DUF1482 Eco28_RS12780 IPR008022 DicB Eco28_RS12790 IPR009821 Protein of unknown function DUF1391 Eco28_RS12795 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS12795 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS12800 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS12805 IPR037042 Putative bacterial toxin ydaT superfamily Eco28_RS12820 IPR036397 Ribonuclease H superfamily Eco28_RS12820 IPR001584 Integrase, catalytic core Eco28_RS12820 IPR009057 Homeobox-like domain superfamily Eco28_RS12820 IPR012337 Ribonuclease H-like superfamily Eco28_RS12825 IPR025577 FlxA-like protein Eco28_RS12835 IPR007337 RelB antitoxin/Antitoxin DinJ Eco28_RS12835 IPR013321 Arc-type ribbon-helix-helix Eco28_RS12840 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Eco28_RS12840 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Eco28_RS12845 IPR018084 Hok/gef cell toxic protein, conserved site Eco28_RS12845 IPR000021 Hok/gef cell toxic protein Eco28_RS12850 IPR016418 Uncharacterised conserved protein UCP004509, Rem Eco28_RS12860 IPR003615 HNH nuclease Eco28_RS12860 IPR010373 Protein of unknown function DUF968 Eco28_RS12865 IPR003222 Antitermination protein Eco28_RS12865 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily Eco28_RS12870 IPR002059 Cold-shock protein, DNA-binding Eco28_RS12870 IPR019844 Cold-shock (CSD) domain Eco28_RS12870 IPR011129 Cold shock domain Eco28_RS12870 IPR012156 Cold shock, CspA Eco28_RS12870 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS12875 IPR002059 Cold-shock protein, DNA-binding Eco28_RS12875 IPR019844 Cold-shock (CSD) domain Eco28_RS12875 IPR011129 Cold shock domain Eco28_RS12875 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS12875 IPR012156 Cold shock, CspA Eco28_RS12880 IPR007054 Lysis protein S Eco28_RS12885 IPR009759 Bacteriophage ES18, Gp24 Eco28_RS12890 IPR023346 Lysozyme-like domain superfamily Eco28_RS12890 IPR002196 Glycoside hydrolase, family 24 Eco28_RS12890 IPR034690 Endolysin T4 type Eco28_RS12895 IPR019659 Protein of unknown function DUF2514 Eco28_RS12900 IPR012156 Cold shock, CspA Eco28_RS12900 IPR011129 Cold shock domain Eco28_RS12900 IPR019844 Cold-shock (CSD) domain Eco28_RS12900 IPR002059 Cold-shock protein, DNA-binding Eco28_RS12900 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS12915 IPR012563 Gns Eco28_RS12920 IPR009833 Uncharacterised protein DUF1398 Eco28_RS12920 IPR036696 YdfO-like superfamily Eco28_RS12925 IPR025030 Domain of unknown function DUF3950 Eco28_RS12930 IPR009061 Putative DNA-binding domain superfamily Eco28_RS12930 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS12930 IPR010906 Bacteriophage lambda, Nu1, terminase small subunit Eco28_RS12935 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS12940 IPR004174 Head-to-tail joining protein W Eco28_RS12940 IPR036626 Head-to-tail joining protein W superfamily Eco28_RS12950 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS12950 IPR002810 NfeD-like, C-terminal domain Eco28_RS12950 IPR002825 Peptidase S49, serine-peptidase prokaryotes Eco28_RS12965 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS12965 IPR002104 Integrase, catalytic domain Eco28_RS12965 IPR038488 Integrase, DNA-binding domain superfamily Eco28_RS12965 IPR025166 Integrase, DNA-binding domain Eco28_RS12965 IPR010998 Integrase/recombinase, N-terminal Eco28_RS12965 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS12965 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS13015 IPR005564 Major capsid protein GpE Eco28_RS13080 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal Eco28_RS13110 IPR000758 Virulence-related outer membrane protein Eco28_RS13110 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS13115 IPR011083 Phage tail collar domain Eco28_RS13115 IPR008969 Carboxypeptidase-like, regulatory domain superfamily Eco28_RS13115 IPR037053 Phage tail collar domain superfamily Eco28_RS13115 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal Eco28_RS13115 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 Eco28_RS13120 IPR025296 Domain of unknown function DUF4158 Eco28_RS13120 IPR002513 Tn3 transposase DDE domain Eco28_RS13125 IPR009057 Homeobox-like domain superfamily Eco28_RS13125 IPR006120 Resolvase, HTH domain Eco28_RS13125 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily Eco28_RS13125 IPR006119 Resolvase, N-terminal catalytic domain Eco28_RS13125 IPR006118 Recombinase, conserved site Eco28_RS13130 IPR013655 PAS fold-3 Eco28_RS13130 IPR004090 Chemotaxis methyl-accepting receptor Eco28_RS13130 IPR003660 HAMP domain Eco28_RS13130 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS13130 IPR035965 PAS domain superfamily Eco28_RS13130 IPR001610 PAC motif Eco28_RS13130 IPR000014 PAS domain Eco28_RS13135 IPR008969 Carboxypeptidase-like, regulatory domain superfamily Eco28_RS13135 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 Eco28_RS13135 IPR011083 Phage tail collar domain Eco28_RS13135 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal Eco28_RS13135 IPR037053 Phage tail collar domain superfamily Eco28_RS13140 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS13145 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily Eco28_RS13145 IPR006119 Resolvase, N-terminal catalytic domain Eco28_RS13145 IPR006118 Recombinase, conserved site Eco28_RS13145 IPR009057 Homeobox-like domain superfamily Eco28_RS13145 IPR006120 Resolvase, HTH domain Eco28_RS13160 IPR011701 Major facilitator superfamily Eco28_RS13160 IPR036259 MFS transporter superfamily Eco28_RS13160 IPR020846 Major facilitator superfamily domain Eco28_RS13160 IPR005828 Major facilitator, sugar transporter-like Eco28_RS13160 IPR004736 MFS transporter, metabolite:H symporter Eco28_RS13165 IPR023027 Mannitol dehydrogenase, conserved site Eco28_RS13165 IPR000669 Mannitol dehydrogenase Eco28_RS13165 IPR036291 NAD(P)-binding domain superfamily Eco28_RS13165 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS13165 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS13165 IPR013118 Mannitol dehydrogenase, C-terminal Eco28_RS13165 IPR013131 Mannitol dehydrogenase, N-terminal Eco28_RS13170 IPR017704 Putative selenium-binding protein YdfZ Eco28_RS13175 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS13175 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS13175 IPR011711 GntR, C-terminal Eco28_RS13175 IPR000524 Transcription regulator HTH, GntR Eco28_RS13175 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS13180 IPR036291 NAD(P)-binding domain superfamily Eco28_RS13180 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS13180 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS13190 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 Eco28_RS13190 IPR001567 Peptidase M3A/M3B catalytic domain Eco28_RS13205 IPR005220 Bacterial OB-fold Eco28_RS13205 IPR016052 Bacteriophage 933W, L0136 Eco28_RS13205 IPR036700 Bacterial OB-fold superfamily Eco28_RS13210 IPR029787 Nucleotide cyclase Eco28_RS13210 IPR000160 GGDEF domain Eco28_RS13220 IPR011701 Major facilitator superfamily Eco28_RS13220 IPR020846 Major facilitator superfamily domain Eco28_RS13220 IPR036259 MFS transporter superfamily Eco28_RS13225 IPR000620 EamA domain Eco28_RS13230 IPR011663 UbiC transcription regulator-associated Eco28_RS13230 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS13230 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Eco28_RS13230 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS13230 IPR000524 Transcription regulator HTH, GntR Eco28_RS13235 IPR013012 Phosphotransferase system, EIIB component, type 3 Eco28_RS13235 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS13235 IPR036095 PTS system IIB component-like superfamily Eco28_RS13240 IPR004501 Phosphotransferase system, EIIC component, type 3 Eco28_RS13240 IPR004796 Phosphotransferase system, cellobiose-type IIC component Eco28_RS13240 IPR003352 Phosphotransferase system, EIIC Eco28_RS13245 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily Eco28_RS13245 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit Eco28_RS13250 IPR021570 LamB-type porin N-terminal domain Eco28_RS13250 IPR003192 Porin, LamB-type Eco28_RS13250 IPR036998 Porin, LamB-type superfamily Eco28_RS13255 IPR001360 Glycoside hydrolase family 1 Eco28_RS13255 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site Eco28_RS13255 IPR017853 Glycoside hydrolase superfamily Eco28_RS13255 IPR018120 Glycoside hydrolase family 1, active site Eco28_RS13260 IPR025732 MarB protein Eco28_RS13265 IPR018062 HTH domain AraC-type, conserved site Eco28_RS13265 IPR009057 Homeobox-like domain superfamily Eco28_RS13265 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS13270 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS13270 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS13270 IPR023187 Transcriptional regulator MarR-type, conserved site Eco28_RS13270 IPR000835 MarR-type HTH domain Eco28_RS13275 IPR002771 Multiple antibiotic resistance (MarC)-related Eco28_RS13280 IPR011701 Major facilitator superfamily Eco28_RS13280 IPR020846 Major facilitator superfamily domain Eco28_RS13280 IPR023495 Sugar efflux transporter, putative Eco28_RS13280 IPR036259 MFS transporter superfamily Eco28_RS13295 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS13295 IPR000847 Transcription regulator HTH, LysR Eco28_RS13295 IPR005119 LysR, substrate-binding Eco28_RS13295 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS13300 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS13300 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS13300 IPR015590 Aldehyde dehydrogenase domain Eco28_RS13300 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS13300 IPR016160 Aldehyde dehydrogenase, cysteine active site Eco28_RS13305 IPR015868 Glutaminase Eco28_RS13305 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS13310 IPR020378 Protein of unknown function DUF4186 Eco28_RS13320 IPR029787 Nucleotide cyclase Eco28_RS13320 IPR000160 GGDEF domain Eco28_RS13330 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS13330 IPR023668 Altronate oxidoreductase Eco28_RS13330 IPR013118 Mannitol dehydrogenase, C-terminal Eco28_RS13330 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS13330 IPR013131 Mannitol dehydrogenase, N-terminal Eco28_RS13330 IPR036291 NAD(P)-binding domain superfamily Eco28_RS13340 IPR021134 Bestrophin/UPF0187 Eco28_RS13345 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal Eco28_RS13345 IPR041698 Methyltransferase domain 25 Eco28_RS13345 IPR023506 Trans-aconitate 2-methyltransferase Eco28_RS13345 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS13350 IPR033672 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase Eco28_RS13350 IPR011008 Dimeric alpha-beta barrel Eco28_RS13350 IPR007138 Antibiotic biosynthesis monooxygenase domain Eco28_RS13355 IPR033673 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase Eco28_RS13355 IPR013785 Aldolase-type TIM barrel Eco28_RS13355 IPR002915 DeoC/FbaB/ lacD aldolase Eco28_RS13355 IPR041720 Aldolase FbaB-like, archaeal-type Eco28_RS13360 IPR025997 Periplasmic binding protein Eco28_RS13360 IPR028082 Periplasmic binding protein-like I Eco28_RS13360 IPR030159 Autoinducer 2 ABC transporter, substrate-binding protein LsrB Eco28_RS13365 IPR001851 ABC transporter, permease Eco28_RS13370 IPR001851 ABC transporter, permease Eco28_RS13375 IPR017871 ABC transporter, conserved site Eco28_RS13375 IPR003439 ABC transporter-like Eco28_RS13375 IPR003593 AAA+ ATPase domain Eco28_RS13375 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS13375 IPR030281 Autoinducer 2 import ATP-binding protein LsrA Eco28_RS13380 IPR007324 Sugar-binding domain, putative Eco28_RS13380 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS13380 IPR037171 NagB/RpiA transferase-like Eco28_RS13385 IPR018484 Carbohydrate kinase, FGGY, N-terminal Eco28_RS13385 IPR033676 Autoinducer-2 kinase Eco28_RS13385 IPR018485 Carbohydrate kinase, FGGY, C-terminal Eco28_RS13385 IPR000577 Carbohydrate kinase, FGGY Eco28_RS13390 IPR030895 T5SS/PEP-CTERM-associated repeat Eco28_RS13390 IPR011050 Pectin lyase fold/virulence factor Eco28_RS13390 IPR024973 ESPR domain Eco28_RS13390 IPR013425 Autotransporter-associated beta strand repeat Eco28_RS13395 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS13395 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS13400 IPR012893 HipA-like, C-terminal Eco28_RS13400 IPR017508 HipA, N-terminal subdomain 1 Eco28_RS13405 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS13410 IPR008966 Adhesion domain superfamily Eco28_RS13410 IPR000259 Fimbrial-type adhesion domain Eco28_RS13410 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS13420 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS13420 IPR013783 Immunoglobulin-like fold Eco28_RS13420 IPR008962 PapD-like superfamily Eco28_RS13420 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS13420 IPR001829 Pili assembly chaperone, bacterial Eco28_RS13420 IPR018046 Pili assembly chaperone, conserved site Eco28_RS13420 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS13425 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS13425 IPR025949 PapC-like, C-terminal domain Eco28_RS13425 IPR000015 Outer membrane usher protein Eco28_RS13425 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS13425 IPR025885 PapC, N-terminal domain Eco28_RS13425 IPR037224 PapC, N-terminal domain superfamily Eco28_RS13430 IPR008966 Adhesion domain superfamily Eco28_RS13430 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS13430 IPR000259 Fimbrial-type adhesion domain Eco28_RS13435 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS13435 IPR008966 Adhesion domain superfamily Eco28_RS13435 IPR000259 Fimbrial-type adhesion domain Eco28_RS13440 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS13440 IPR008966 Adhesion domain superfamily Eco28_RS13440 IPR015243 FimH, mannose-binding domain Eco28_RS13445 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS13445 IPR041953 YdeP, molybdopterin-binding oxidoreductase-like domain Eco28_RS13445 IPR010046 Oxidoreductase alpha (molybdopterin) subunit Eco28_RS13445 IPR037951 YdeP-like, MopB domain Eco28_RS13445 IPR006656 Molybdopterin oxidoreductase Eco28_RS13450 IPR031411 Two-component-system connector protein SafA Eco28_RS13455 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS13455 IPR009057 Homeobox-like domain superfamily Eco28_RS13455 IPR018062 HTH domain AraC-type, conserved site Eco28_RS13455 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS13460 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS13460 IPR000917 Sulfatase, N-terminal Eco28_RS13460 IPR024607 Sulfatase, conserved site Eco28_RS13465 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme Eco28_RS13465 IPR007197 Radical SAM Eco28_RS13465 IPR023885 4Fe4S-binding SPASM domain Eco28_RS13465 IPR013785 Aldolase-type TIM barrel Eco28_RS13470 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS13470 IPR003439 ABC transporter-like Eco28_RS13470 IPR036640 ABC transporter type 1, transmembrane domain superfamily Eco28_RS13470 IPR011527 ABC transporter type 1, transmembrane domain Eco28_RS13470 IPR003593 AAA+ ATPase domain Eco28_RS13470 IPR017871 ABC transporter, conserved site Eco28_RS13475 IPR012910 TonB-dependent receptor, plug domain Eco28_RS13475 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS13475 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS13480 IPR007863 Peptidase M16, C-terminal Eco28_RS13480 IPR001431 Peptidase M16, zinc-binding site Eco28_RS13480 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like Eco28_RS13480 IPR011765 Peptidase M16, N-terminal Eco28_RS13490 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS13490 IPR002129 Pyridoxal phosphate-dependent decarboxylase Eco28_RS13490 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS13490 IPR021115 Pyridoxal-phosphate binding site Eco28_RS13490 IPR010107 Glutamate decarboxylase Eco28_RS13495 IPR002293 Amino acid/polyamine transporter I Eco28_RS13495 IPR004759 Glutamate:g-aminobutyrate antiporter Eco28_RS13500 IPR003790 Glycosyl hydrolase-like 10 Eco28_RS13500 IPR017853 Glycoside hydrolase superfamily Eco28_RS13500 IPR013785 Aldolase-type TIM barrel Eco28_RS13505 IPR029787 Nucleotide cyclase Eco28_RS13505 IPR012292 Globin/Protoglobin Eco28_RS13505 IPR009050 Globin-like superfamily Eco28_RS13505 IPR000160 GGDEF domain Eco28_RS13505 IPR039435 Diguanylate cyclase DosC, globin sensor domain Eco28_RS13510 IPR001633 EAL domain Eco28_RS13510 IPR029787 Nucleotide cyclase Eco28_RS13510 IPR035919 EAL domain superfamily Eco28_RS13510 IPR000160 GGDEF domain Eco28_RS13510 IPR012226 Diguanylate cyclase/phosphodiesterase Eco28_RS13510 IPR035965 PAS domain superfamily Eco28_RS13510 IPR000700 PAS-associated, C-terminal Eco28_RS13510 IPR000014 PAS domain Eco28_RS13510 IPR001610 PAC motif Eco28_RS13515 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Eco28_RS13515 IPR000755 D-alanyl-D-alanine dipeptidase Eco28_RS13520 IPR030678 Peptide/nickel binding protein, MppA-type Eco28_RS13520 IPR039424 Solute-binding protein family 5 Eco28_RS13520 IPR000914 Solute-binding protein family 5 domain Eco28_RS13520 IPR023765 Solute-binding protein family 5, conserved site Eco28_RS13525 IPR035906 MetI-like superfamily Eco28_RS13525 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS13530 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS13530 IPR035906 MetI-like superfamily Eco28_RS13530 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Eco28_RS13535 IPR003439 ABC transporter-like Eco28_RS13535 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Eco28_RS13535 IPR017871 ABC transporter, conserved site Eco28_RS13535 IPR003593 AAA+ ATPase domain Eco28_RS13535 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS13540 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS13540 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Eco28_RS13540 IPR003439 ABC transporter-like Eco28_RS13540 IPR017871 ABC transporter, conserved site Eco28_RS13540 IPR003593 AAA+ ATPase domain Eco28_RS13545 IPR036102 OsmC/Ohr superfamily Eco28_RS13545 IPR015946 K homology domain-like, alpha/beta Eco28_RS13545 IPR003718 OsmC/Ohr family Eco28_RS13545 IPR019904 Peroxiredoxin OsmC Eco28_RS13555 IPR019625 Biofilm-dependent modulation protein Bdm, putative Eco28_RS13560 IPR012607 Ribosomal protein S22 Eco28_RS13565 IPR036291 NAD(P)-binding domain superfamily Eco28_RS13565 IPR023667 NAD-dependent malic enzyme, proteobacteria Eco28_RS13565 IPR001891 Malic oxidoreductase Eco28_RS13565 IPR012302 Malic enzyme, NAD-binding Eco28_RS13565 IPR012301 Malic enzyme, N-terminal domain Eco28_RS13565 IPR015884 Malic enzyme, conserved site Eco28_RS13565 IPR037062 Malic enzyme, N-terminal domain superfamily Eco28_RS13570 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS13570 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS13570 IPR036291 NAD(P)-binding domain superfamily Eco28_RS13570 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS13570 IPR011032 GroES-like superfamily Eco28_RS13570 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS13575 IPR013430 Toxin-antitoxin system, antidote protein, HigA Eco28_RS13575 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS13575 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS13580 IPR006471 Formate dehydrogenase, gamma subunit Eco28_RS13580 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Eco28_RS13580 IPR016174 Di-haem cytochrome, transmembrane Eco28_RS13585 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS13585 IPR015246 Formate dehydrogenase, transmembrane Eco28_RS13585 IPR014603 Formate dehydrogenase iron-sulphur subunit Eco28_RS13585 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria Eco28_RS13585 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS13585 IPR038384 Formate dehydrogenase, C-terminal domain superfamily Eco28_RS13595 IPR000620 EamA domain Eco28_RS13600 IPR001702 Porin, Gram-negative type Eco28_RS13600 IPR013793 Porin, Gram-negative type, conserved site Eco28_RS13600 IPR001897 Porin, gammaproteobacterial Eco28_RS13600 IPR033900 Porin domain, Gram-negative type Eco28_RS13600 IPR023614 Porin domain superfamily Eco28_RS13610 IPR032675 Leucine-rich repeat domain superfamily Eco28_RS13610 IPR001611 Leucine-rich repeat Eco28_RS13615 IPR001611 Leucine-rich repeat Eco28_RS13615 IPR032675 Leucine-rich repeat domain superfamily Eco28_RS13620 IPR011701 Major facilitator superfamily Eco28_RS13620 IPR004737 Nitrate transporter Eco28_RS13620 IPR036259 MFS transporter superfamily Eco28_RS13625 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site Eco28_RS13625 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS13625 IPR028189 Nitrate reductase, alpha subunit, N-terminal Eco28_RS13625 IPR006468 Nitrate reductase, alpha subunit Eco28_RS13625 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS13625 IPR037943 Nitrate reductase alpha subunit-like, MopB domain Eco28_RS13625 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS13625 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS13625 IPR006656 Molybdopterin oxidoreductase Eco28_RS13630 IPR006547 Nitrate reductase, beta subunit Eco28_RS13630 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS13630 IPR029263 Respiratory nitrate reductase beta, C-terminal Eco28_RS13630 IPR038262 Nitrate reductase beta, C-terminal domain superfamily Eco28_RS13635 IPR020945 DMSO/Nitrate reductase chaperone Eco28_RS13635 IPR036411 TorD-like superfamily Eco28_RS13635 IPR003765 Nitrate reductase chaperone, NarJ Eco28_RS13640 IPR036197 NarG-like superfamily Eco28_RS13640 IPR023234 NarG-like domain Eco28_RS13640 IPR003816 Nitrate reductase, gamma subunit Eco28_RS13645 IPR003719 Phenazine biosynthesis PhzF protein Eco28_RS13650 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS13650 IPR001447 Arylamine N-acetyltransferase Eco28_RS13655 IPR002563 Flavin reductase like domain Eco28_RS13655 IPR012349 FMN-binding split barrel Eco28_RS13660 IPR004370 4-oxalocrotonate tautomerase Eco28_RS13660 IPR017284 Tautomerase PptA Eco28_RS13660 IPR014347 Tautomerase/MIF superfamily Eco28_RS13665 IPR032806 H repeat-associated protein, N-terminal Eco28_RS13665 IPR002559 Transposase, IS4-like Eco28_RS13685 IPR001826 RHS protein Eco28_RS13685 IPR025479 Domain of unknown function DUF4329 Eco28_RS13685 IPR022385 Rhs repeat-associated core Eco28_RS13685 IPR031325 RHS repeat Eco28_RS13685 IPR006530 YD repeat Eco28_RS13690 IPR037026 Vgr protein, OB-fold domain superfamily Eco28_RS13690 IPR006531 Gp5 N-terminal Eco28_RS13690 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Eco28_RS13690 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Eco28_RS13695 IPR020099 Protein of unknown function DUF5445 Eco28_RS13705 IPR004840 Amino acid permease, conserved site Eco28_RS13705 IPR004841 Amino acid permease/ SLC12A domain Eco28_RS13710 IPR015943 WD40/YVTN repeat-like-containing domain superfamily Eco28_RS13710 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily Eco28_RS13725 IPR039426 Vitamin B12 transporter BtuB-like Eco28_RS13725 IPR012910 TonB-dependent receptor, plug domain Eco28_RS13725 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS13725 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS13725 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS13725 IPR010105 TonB-dependent siderophore receptor Eco28_RS13740 IPR011711 GntR, C-terminal Eco28_RS13740 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS13740 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS13740 IPR000524 Transcription regulator HTH, GntR Eco28_RS13740 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS13745 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS13745 IPR041694 Oxidoreductase, N-terminal domain Eco28_RS13745 IPR011032 GroES-like superfamily Eco28_RS13745 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS13745 IPR036291 NAD(P)-binding domain superfamily Eco28_RS13755 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS13755 IPR000182 GNAT domain Eco28_RS13760 IPR006750 Putative inner membrane exporter, YdcZ Eco28_RS13765 IPR019671 Protein of unknown function DUF2526 Eco28_RS13770 IPR019689 Toxin GhoT/OrtT Eco28_RS13785 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS13785 IPR015590 Aldehyde dehydrogenase domain Eco28_RS13785 IPR015657 Aminobutyraldehyde dehydrogenase Eco28_RS13785 IPR017749 1-pyrroline dehydrogenase Eco28_RS13785 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS13785 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS13785 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Eco28_RS13790 IPR035906 MetI-like superfamily Eco28_RS13790 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS13795 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS13795 IPR035906 MetI-like superfamily Eco28_RS13800 IPR013611 Transport-associated OB, type 2 Eco28_RS13800 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS13800 IPR003439 ABC transporter-like Eco28_RS13800 IPR003593 AAA+ ATPase domain Eco28_RS13800 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS13800 IPR017871 ABC transporter, conserved site Eco28_RS13805 IPR006059 Bacterial extracellular solute-binding protein Eco28_RS13805 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein Eco28_RS13810 IPR000524 Transcription regulator HTH, GntR Eco28_RS13810 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS13810 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS13810 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS13810 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS13810 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS13810 IPR004839 Aminotransferase, class I/classII Eco28_RS13815 IPR031807 HicB-like antitoxin of toxin-antitoxin system Eco28_RS13815 IPR035069 TTHA1013/TTHA0281-like Eco28_RS13815 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS13815 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS13820 IPR038570 HicA superfamily Eco28_RS13820 IPR012933 HicA mRNA interferase family Eco28_RS13825 IPR020117 Uncharacterised protein family YncJ Eco28_RS13830 IPR001539 Peptidase U32 Eco28_RS13830 IPR020988 Peptidase U32, collagenase Eco28_RS13835 IPR011051 RmlC-like cupin domain superfamily Eco28_RS13835 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS13835 IPR013096 Cupin 2, conserved barrel Eco28_RS13835 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS13835 IPR014710 RmlC-like jelly roll fold Eco28_RS13840 IPR004711 Benzoate transporter Eco28_RS13845 IPR021027 Transposase, putative, helix-turn-helix domain Eco28_RS13845 IPR001959 Probable transposase, IS891/IS1136/IS1341 Eco28_RS13845 IPR010095 Transposase IS605, OrfB, C-terminal Eco28_RS13855 IPR021747 Protein of unknown function DUF3313 Eco28_RS13860 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS13860 IPR015985 Tellurite resistance methyltransferase TehB-like domain Eco28_RS13860 IPR004537 Tellurite resistance methyltransferase, TehB Eco28_RS13865 IPR004695 Voltage-dependent anion channel Eco28_RS13865 IPR039264 Tellurite resistance protein TehA Eco28_RS13865 IPR011552 Tellurite resistance protein TehA/malic acid transport protein Eco28_RS13865 IPR038665 Voltage-dependent anion channel superfamily Eco28_RS13870 IPR040831 Beta solenoid repeat from YDCK Eco28_RS13870 IPR011004 Trimeric LpxA-like superfamily Eco28_RS13875 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS13875 IPR000182 GNAT domain Eco28_RS13880 IPR007420 Protein of unknown function DUF465 Eco28_RS13880 IPR038444 DUF465 superfamily Eco28_RS13890 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS13890 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS13890 IPR014756 Immunoglobulin E-set Eco28_RS13890 IPR013783 Immunoglobulin-like fold Eco28_RS13890 IPR014438 Glucan biosynthesis protein MdoG/MdoD Eco28_RS13890 IPR023724 Glucan biosynthesis, MdoD Eco28_RS13890 IPR014718 Glycoside hydrolase-type carbohydrate-binding Eco28_RS13890 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS13890 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal Eco28_RS13900 IPR009770 Domain of unknown function DUF1338 Eco28_RS13905 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS13905 IPR005119 LysR, substrate-binding Eco28_RS13905 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS13905 IPR000847 Transcription regulator HTH, LysR Eco28_RS13910 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily Eco28_RS13910 IPR004090 Chemotaxis methyl-accepting receptor Eco28_RS13910 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site Eco28_RS13910 IPR003660 HAMP domain Eco28_RS13910 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding Eco28_RS13910 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS13915 IPR018084 Hok/gef cell toxic protein, conserved site Eco28_RS13915 IPR000021 Hok/gef cell toxic protein Eco28_RS13925 IPR016174 Di-haem cytochrome, transmembrane Eco28_RS13925 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Eco28_RS13930 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain Eco28_RS13930 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I Eco28_RS13930 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain Eco28_RS13930 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site Eco28_RS13930 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family Eco28_RS13930 IPR036291 NAD(P)-binding domain superfamily Eco28_RS13935 IPR016160 Aldehyde dehydrogenase, cysteine active site Eco28_RS13935 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS13935 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Eco28_RS13935 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS13935 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS13935 IPR015590 Aldehyde dehydrogenase domain Eco28_RS13940 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS13940 IPR003848 Domain of unknown function DUF218 Eco28_RS13965 IPR024590 RNA helicase HrpA, C-terminal Eco28_RS13965 IPR001650 Helicase, C-terminal Eco28_RS13965 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS13965 IPR007502 Helicase-associated domain Eco28_RS13965 IPR010222 RNA helicase HrpA Eco28_RS13965 IPR011545 DEAD/DEAH box helicase domain Eco28_RS13965 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS13965 IPR003593 AAA+ ATPase domain Eco28_RS13965 IPR011709 Domain of unknown function DUF1605 Eco28_RS13970 IPR023048 NADH-azoreductase, FMN-dependent Eco28_RS13970 IPR029039 Flavoprotein-like superfamily Eco28_RS13970 IPR003680 Flavodoxin-like fold Eco28_RS13975 IPR020422 Dual specificity protein phosphatase domain Eco28_RS13975 IPR029021 Protein-tyrosine phosphatase-like Eco28_RS13975 IPR000340 Dual specificity phosphatase, catalytic domain Eco28_RS13975 IPR000387 Tyrosine specific protein phosphatases domain Eco28_RS13975 IPR003595 Protein-tyrosine phosphatase, catalytic Eco28_RS13975 IPR016130 Protein-tyrosine phosphatase, active site Eco28_RS13980 IPR029058 Alpha/Beta hydrolase fold Eco28_RS13980 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS13980 IPR022742 Serine aminopeptidase, S33 Eco28_RS13980 IPR022744 Methyltransferase domain, putative Eco28_RS13985 IPR000374 Phosphatidate cytidylyltransferase Eco28_RS13990 IPR000462 CDP-alcohol phosphatidyltransferase Eco28_RS13995 IPR024497 Protein of unknown function DUF2773 Eco28_RS14000 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS14000 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS14005 IPR036709 Autotransporter beta-domain superfamily Eco28_RS14005 IPR005546 Autotransporter beta-domain Eco28_RS14015 IPR008309 Uncharacterised conserved protein UCP025560 Eco28_RS14020 IPR025985 YnbE-like lipoprotein Eco28_RS14025 IPR021730 Dicarboxylate transport Eco28_RS14030 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS14030 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Eco28_RS14030 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Eco28_RS14030 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Eco28_RS14030 IPR036291 NAD(P)-binding domain superfamily Eco28_RS14035 IPR038670 HslJ-like superfamily Eco28_RS14035 IPR005184 Domain of unknown function DUF306, Meta/HslJ Eco28_RS14040 IPR005590 Protein of unknown function DUF333 Eco28_RS14045 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Eco28_RS14045 IPR029061 Thiamin diphosphate-binding fold Eco28_RS14045 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain Eco28_RS14045 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain Eco28_RS14045 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain Eco28_RS14045 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS14045 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal Eco28_RS14045 IPR011895 Pyruvate-flavodoxin oxidoreductase Eco28_RS14045 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Eco28_RS14045 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Eco28_RS14045 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily Eco28_RS14045 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS14055 IPR001702 Porin, Gram-negative type Eco28_RS14055 IPR033900 Porin domain, Gram-negative type Eco28_RS14055 IPR023614 Porin domain superfamily Eco28_RS14055 IPR001897 Porin, gammaproteobacterial Eco28_RS14060 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS14060 IPR006016 UspA Eco28_RS14060 IPR006015 Universal stress protein A family Eco28_RS14070 IPR009057 Homeobox-like domain superfamily Eco28_RS14070 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily Eco28_RS14070 IPR006120 Resolvase, HTH domain Eco28_RS14070 IPR006118 Recombinase, conserved site Eco28_RS14070 IPR006119 Resolvase, N-terminal catalytic domain Eco28_RS14075 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS14080 IPR005003 Bacteriophage lambda, Stf, side tail fibre-repeat-1 Eco28_RS14080 IPR008969 Carboxypeptidase-like, regulatory domain superfamily Eco28_RS14080 IPR011083 Phage tail collar domain Eco28_RS14080 IPR013609 Bacteriophage 933W, L0121, tail fibre, N-terminal Eco28_RS14080 IPR037053 Phage tail collar domain superfamily Eco28_RS14085 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS14085 IPR000758 Virulence-related outer membrane protein Eco28_RS14095 IPR036515 Transposase IS200-like superfamily Eco28_RS14095 IPR002686 Transposase IS200-like Eco28_RS14130 IPR009628 Bacteriophage lambda, GpH, tail tape measure, N-terminal Eco28_RS14210 IPR003115 ParB/Sulfiredoxin Eco28_RS14210 IPR036086 ParB/Sulfiredoxin superfamily Eco28_RS14220 IPR004772 TrkH potassium transport family Eco28_RS14220 IPR003445 Cation transporter Eco28_RS14225 IPR010346 Spanin, outer membrane subunit Eco28_RS14230 IPR034690 Endolysin T4 type Eco28_RS14230 IPR002196 Glycoside hydrolase, family 24 Eco28_RS14230 IPR023346 Lysozyme-like domain superfamily Eco28_RS14235 IPR007054 Lysis protein S Eco28_RS14250 IPR014161 Tol-Pal system, TolA Eco28_RS14265 IPR010774 Protein of unknown function DUF1364 Eco28_RS14285 IPR036259 MFS transporter superfamily Eco28_RS14285 IPR020846 Major facilitator superfamily domain Eco28_RS14285 IPR011701 Major facilitator superfamily Eco28_RS14290 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase Eco28_RS14290 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily Eco28_RS14290 IPR013024 Gamma-glutamyl cyclotransferase-like Eco28_RS14295 IPR000847 Transcription regulator HTH, LysR Eco28_RS14295 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS14295 IPR005119 LysR, substrate-binding Eco28_RS14295 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS14300 IPR018723 Protein of unknown function DUF2254, membrane Eco28_RS14310 IPR000060 BCCT transporter family Eco28_RS14310 IPR018093 BCCT transporter, conserved site Eco28_RS14320 IPR040480 DnaT, DNA-binding domain Eco28_RS14320 IPR020917 Primosomal protein 1 Eco28_RS14340 IPR009060 UBA-like superfamily Eco28_RS14345 IPR009821 Protein of unknown function DUF1391 Eco28_RS14350 IPR025982 Superinfection exclusion protein B Eco28_RS14365 IPR007308 Rtr1/RPAP2 domain Eco28_RS14375 IPR024432 Putative exodeoxyribonuclease 8, PDDEXK-like domain Eco28_RS14375 IPR010584 Exodeoxyribonuclease 8 Eco28_RS14380 IPR004590 DNA single-strand annealing protein RecT Eco28_RS14380 IPR018330 RecT family Eco28_RS14385 IPR019908 Endodeoxyribonuclease toxin RalR Eco28_RS14390 IPR009572 Protein of unknown function DUF1187 Eco28_RS14395 IPR009634 Putative excisionase Eco28_RS14395 IPR038146 Bacteriophage 933W-like, putative excisionase superfamily Eco28_RS14400 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS14400 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS14400 IPR022000 Min27-like integrase, DNA-binding domain Eco28_RS14400 IPR002104 Integrase, catalytic domain Eco28_RS14400 IPR010998 Integrase/recombinase, N-terminal Eco28_RS14405 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Eco28_RS14405 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS14405 IPR012089 tRNA-cytidine(32) 2-sulfurtransferase Eco28_RS14405 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type Eco28_RS14410 IPR014014 RNA helicase, DEAD-box type, Q motif Eco28_RS14410 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS14410 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Eco28_RS14410 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Eco28_RS14410 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS14410 IPR011545 DEAD/DEAH box helicase domain Eco28_RS14410 IPR028619 ATP-dependent RNA helicase DbpA Eco28_RS14410 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Eco28_RS14410 IPR001650 Helicase, C-terminal Eco28_RS14420 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB Eco28_RS14420 IPR023714 Zinc transport protein ZntB Eco28_RS14425 IPR013656 PAS fold-4 Eco28_RS14425 IPR035965 PAS domain superfamily Eco28_RS14425 IPR000160 GGDEF domain Eco28_RS14425 IPR029787 Nucleotide cyclase Eco28_RS14425 IPR000700 PAS-associated, C-terminal Eco28_RS14425 IPR000014 PAS domain Eco28_RS14430 IPR002625 Smr domain Eco28_RS14430 IPR036063 Smr domain superfamily Eco28_RS14440 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS14440 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS14440 IPR000847 Transcription regulator HTH, LysR Eco28_RS14440 IPR005119 LysR, substrate-binding Eco28_RS14445 IPR011650 Peptidase M20, dimerisation domain Eco28_RS14445 IPR002933 Peptidase M20 Eco28_RS14445 IPR036264 Bacterial exopeptidase dimerisation domain Eco28_RS14445 IPR017439 Amidohydrolase Eco28_RS14445 IPR033845 p-Aminobenzoyl-glutamate hydrolase subunit A Eco28_RS14450 IPR017439 Amidohydrolase Eco28_RS14450 IPR036264 Bacterial exopeptidase dimerisation domain Eco28_RS14450 IPR017145 Aminobenzoyl-glutamate utilization protein B Eco28_RS14450 IPR002933 Peptidase M20 Eco28_RS14460 IPR011540 AbgT, Proteobacteria Eco28_RS14460 IPR004697 p-Aminobenzoyl-glutamate transport protein AbgT Eco28_RS14465 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily Eco28_RS14465 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS14465 IPR023546 Methylated-DNA--protein-cysteine methyltransferase Eco28_RS14465 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain Eco28_RS14465 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site Eco28_RS14465 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Eco28_RS14465 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding Eco28_RS14470 IPR018490 Cyclic nucleotide-binding-like Eco28_RS14470 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS14470 IPR000595 Cyclic nucleotide-binding domain Eco28_RS14470 IPR018335 Transcription regulator HTH, Crp-type, conserved site Eco28_RS14470 IPR012318 Crp-type HTH domain Eco28_RS14470 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS14470 IPR014710 RmlC-like jelly roll fold Eco28_RS14475 IPR006016 UspA Eco28_RS14480 IPR019685 Protein of unknown function DUF2534 Eco28_RS14485 IPR006685 Mechanosensitive ion channel MscS Eco28_RS14485 IPR023408 Mechanosensitive ion channel MscS domain superfamily Eco28_RS14485 IPR011066 Mechanosensitive ion channel MscS, C-terminal Eco28_RS14485 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Eco28_RS14485 IPR006686 Mechanosensitive ion channel MscS, conserved site Eco28_RS14485 IPR010920 LSM domain superfamily Eco28_RS14490 IPR000914 Solute-binding protein family 5 domain Eco28_RS14490 IPR023765 Solute-binding protein family 5, conserved site Eco28_RS14490 IPR030678 Peptide/nickel binding protein, MppA-type Eco28_RS14490 IPR039424 Solute-binding protein family 5 Eco28_RS14495 IPR000847 Transcription regulator HTH, LysR Eco28_RS14495 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS14495 IPR005119 LysR, substrate-binding Eco28_RS14495 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS14500 IPR029058 Alpha/Beta hydrolase fold Eco28_RS14500 IPR022742 Serine aminopeptidase, S33 Eco28_RS14505 IPR029058 Alpha/Beta hydrolase fold Eco28_RS14505 IPR022742 Serine aminopeptidase, S33 Eco28_RS14510 IPR036291 NAD(P)-binding domain superfamily Eco28_RS14515 IPR000834 Peptidase M14, carboxypeptidase A Eco28_RS14520 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Eco28_RS14520 IPR029017 Enolase-like, N-terminal Eco28_RS14520 IPR034603 Dipeptide epimerase Eco28_RS14520 IPR029065 Enolase C-terminal domain-like Eco28_RS14520 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Eco28_RS14520 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site Eco28_RS14520 IPR036849 Enolase-like, C-terminal domain superfamily Eco28_RS14525 IPR002065 Thiol peroxidase Tpx Eco28_RS14525 IPR036249 Thioredoxin-like superfamily Eco28_RS14525 IPR013766 Thioredoxin domain Eco28_RS14525 IPR018219 Thiol peroxidase conserved site Eco28_RS14525 IPR013740 Redoxin Eco28_RS14530 IPR003593 AAA+ ATPase domain Eco28_RS14530 IPR002912 ACT domain Eco28_RS14530 IPR030828 TyrR family, helix-turn-helix domain Eco28_RS14530 IPR009057 Homeobox-like domain superfamily Eco28_RS14530 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS14530 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS14530 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS14530 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS14530 IPR000014 PAS domain Eco28_RS14530 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS14530 IPR035965 PAS domain superfamily Eco28_RS14535 IPR006507 Uncharacterised protein family UPF0283 Eco28_RS14535 IPR021147 Protein of unknown function DUF697 Eco28_RS14540 IPR007413 Protein of unknown function DUF463, YcjX-like protein Eco28_RS14545 IPR000843 LacI-type HTH domain Eco28_RS14545 IPR028082 Periplasmic binding protein-like I Eco28_RS14545 IPR001761 Periplasmic binding protein/LacI sugar binding domain Eco28_RS14545 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS14550 IPR018981 Outer membrane protein G Eco28_RS14555 IPR017871 ABC transporter, conserved site Eco28_RS14555 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS14555 IPR003439 ABC transporter-like Eco28_RS14555 IPR040582 MalK, OB fold domain Eco28_RS14555 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS14555 IPR003593 AAA+ ATPase domain Eco28_RS14555 IPR005116 Transport-associated OB, type 1 Eco28_RS14560 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS14560 IPR010972 Beta-phosphoglucomutase Eco28_RS14560 IPR036412 HAD-like superfamily Eco28_RS14560 IPR006439 HAD hydrolase, subfamily IA Eco28_RS14560 IPR023214 HAD superfamily Eco28_RS14560 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Eco28_RS14560 IPR010976 Beta-phosphoglucomutase hydrolase Eco28_RS14565 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase Eco28_RS14565 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Eco28_RS14565 IPR005196 Glycoside hydrolase, family 65, N-terminal Eco28_RS14565 IPR008928 Six-hairpin glycosidase superfamily Eco28_RS14565 IPR012341 Six-hairpin glycosidase-like superfamily Eco28_RS14565 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS14565 IPR005195 Glycoside hydrolase, family 65, central catalytic Eco28_RS14565 IPR005194 Glycoside hydrolase family 65, C-terminal Eco28_RS14570 IPR000683 Oxidoreductase, N-terminal Eco28_RS14570 IPR036291 NAD(P)-binding domain superfamily Eco28_RS14570 IPR004104 Oxidoreductase, C-terminal Eco28_RS14575 IPR036237 Xylose isomerase-like superfamily Eco28_RS14575 IPR013022 Xylose isomerase-like, TIM barrel domain Eco28_RS14580 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS14580 IPR036291 NAD(P)-binding domain superfamily Eco28_RS14580 IPR011032 GroES-like superfamily Eco28_RS14585 IPR035906 MetI-like superfamily Eco28_RS14585 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS14590 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS14590 IPR035906 MetI-like superfamily Eco28_RS14595 IPR006059 Bacterial extracellular solute-binding protein Eco28_RS14600 IPR017853 Glycoside hydrolase superfamily Eco28_RS14600 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Eco28_RS14600 IPR033746 Glucosylglycerate phosphorylase Eco28_RS14600 IPR016377 Sucrose/Glucosylglycerate phosphorylase-related Eco28_RS14605 IPR014323 Phage shock protein, PspE Eco28_RS14605 IPR001763 Rhodanese-like domain Eco28_RS14605 IPR036873 Rhodanese-like domain superfamily Eco28_RS14610 IPR014321 Phage shock protein, PspD Eco28_RS14615 IPR007168 Phage shock protein, PspC, N-terminal Eco28_RS14615 IPR014320 Phage shock protein, PspC Eco28_RS14620 IPR009554 Phage shock protein B Eco28_RS14625 IPR007157 PspA/IM30 Eco28_RS14625 IPR014319 Phage shock protein, PspA Eco28_RS14630 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS14630 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS14630 IPR002197 DNA binding HTH domain, Fis-type Eco28_RS14630 IPR014317 Transcription activator PspF Eco28_RS14630 IPR003593 AAA+ ATPase domain Eco28_RS14630 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS14630 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS14630 IPR009057 Homeobox-like domain superfamily Eco28_RS14635 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS14635 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS14635 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS14635 IPR005814 Aminotransferase class-III Eco28_RS14635 IPR004632 4-aminobutyrate aminotransferase, bacterial Eco28_RS14640 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS14640 IPR006076 FAD dependent oxidoreductase Eco28_RS14645 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS14645 IPR015590 Aldehyde dehydrogenase domain Eco28_RS14645 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS14645 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Eco28_RS14645 IPR016160 Aldehyde dehydrogenase, cysteine active site Eco28_RS14645 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS14650 IPR014710 RmlC-like jelly roll fold Eco28_RS14650 IPR011051 RmlC-like cupin domain superfamily Eco28_RS14650 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS14650 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS14650 IPR013096 Cupin 2, conserved barrel Eco28_RS14655 IPR029062 Class I glutamine amidotransferase-like Eco28_RS14655 IPR011697 Peptidase C26 Eco28_RS14655 IPR017926 Glutamine amidotransferase Eco28_RS14660 IPR036651 Glutamine synthetase, N-terminal domain superfamily Eco28_RS14660 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Eco28_RS14660 IPR027303 Glutamine synthetase, glycine-rich site Eco28_RS14660 IPR008146 Glutamine synthetase, catalytic domain Eco28_RS14665 IPR004841 Amino acid permease/ SLC12A domain Eco28_RS14670 IPR020251 Uncharacterised protein family, YmjA Eco28_RS14680 IPR039424 Solute-binding protein family 5 Eco28_RS14680 IPR000914 Solute-binding protein family 5 domain Eco28_RS14680 IPR030678 Peptide/nickel binding protein, MppA-type Eco28_RS14680 IPR023765 Solute-binding protein family 5, conserved site Eco28_RS14685 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS14685 IPR035906 MetI-like superfamily Eco28_RS14690 IPR035906 MetI-like superfamily Eco28_RS14690 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS14690 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Eco28_RS14695 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS14695 IPR003593 AAA+ ATPase domain Eco28_RS14695 IPR003439 ABC transporter-like Eco28_RS14695 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Eco28_RS14700 IPR003593 AAA+ ATPase domain Eco28_RS14700 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS14700 IPR003439 ABC transporter-like Eco28_RS14700 IPR017871 ABC transporter, conserved site Eco28_RS14705 IPR011701 Major facilitator superfamily Eco28_RS14705 IPR036259 MFS transporter superfamily Eco28_RS14705 IPR004812 Drug resistance transporter Bcr/CmlA subfamily Eco28_RS14705 IPR020846 Major facilitator superfamily domain Eco28_RS14710 IPR010131 RND efflux system, outer membrane lipoprotein, NodT Eco28_RS14710 IPR003423 Outer membrane efflux protein Eco28_RS14720 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS14720 IPR006143 RND efflux pump, membrane fusion protein Eco28_RS14725 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS14725 IPR032551 HTH-type transcriptional repressor, C-terminal Eco28_RS14725 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS14725 IPR009057 Homeobox-like domain superfamily Eco28_RS14725 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS14730 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) Eco28_RS14730 IPR036291 NAD(P)-binding domain superfamily Eco28_RS14730 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS14735 IPR029032 AhpD-like Eco28_RS14740 IPR040476 RNase II/RNase R, cold shock domain Eco28_RS14740 IPR004476 Ribonuclease II/ribonuclease R Eco28_RS14740 IPR011129 Cold shock domain Eco28_RS14740 IPR013223 Ribonuclease B, N-terminal OB domain Eco28_RS14740 IPR011804 Ribonuclease II Eco28_RS14740 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS14740 IPR022966 Ribonuclease II/R, conserved site Eco28_RS14740 IPR003029 S1 domain Eco28_RS14740 IPR001900 Ribonuclease II/R Eco28_RS14750 IPR000160 GGDEF domain Eco28_RS14750 IPR001633 EAL domain Eco28_RS14750 IPR035965 PAS domain superfamily Eco28_RS14750 IPR035919 EAL domain superfamily Eco28_RS14750 IPR000014 PAS domain Eco28_RS14750 IPR029787 Nucleotide cyclase Eco28_RS14755 IPR020887 Uncharacterised protein family UPF0509 Eco28_RS14760 IPR037171 NagB/RpiA transferase-like Eco28_RS14760 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS14760 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS14760 IPR014036 DeoR C-terminal sensor domain Eco28_RS14760 IPR001034 DeoR-type HTH domain Eco28_RS14760 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS14765 IPR008816 Glycine zipper 2TM domain Eco28_RS14770 IPR036877 SUI1 domain superfamily Eco28_RS14770 IPR001950 SUI1 domain Eco28_RS14770 IPR005872 Archaeal/bacterial translation initiation factor SUI1 Eco28_RS14775 IPR014732 Orotidine 5'-phosphate decarboxylase Eco28_RS14775 IPR001754 Orotidine 5'-phosphate decarboxylase domain Eco28_RS14775 IPR013785 Aldolase-type TIM barrel Eco28_RS14775 IPR011060 Ribulose-phosphate binding barrel Eco28_RS14775 IPR018089 Orotidine 5'-phosphate decarboxylase, active site Eco28_RS14780 IPR030865 Lipopolysaccharide assembly protein B Eco28_RS14780 IPR019734 Tetratricopeptide repeat Eco28_RS14780 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS14780 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS14780 IPR041166 LapB, rubredoxin metal binding domain Eco28_RS14785 IPR032906 Lipopolysaccharide assembly protein A Eco28_RS14785 IPR010445 Lipopolysaccharide assembly protein A domain Eco28_RS14790 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Eco28_RS14790 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Eco28_RS14795 IPR036144 RibA-like superfamily Eco28_RS14795 IPR000926 GTP cyclohydrolase II, RibA Eco28_RS14795 IPR032677 GTP cyclohydrolase II Eco28_RS14800 IPR006249 Aconitase/Iron-responsive element-binding protein 2 Eco28_RS14800 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Eco28_RS14800 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Eco28_RS14800 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Eco28_RS14800 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain Eco28_RS14800 IPR018136 Aconitase family, 4Fe-4S cluster binding site Eco28_RS14800 IPR036008 Aconitase, iron-sulfur domain Eco28_RS14820 IPR005119 LysR, substrate-binding Eco28_RS14820 IPR000847 Transcription regulator HTH, LysR Eco28_RS14820 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS14820 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS14830 IPR002686 Transposase IS200-like Eco28_RS14830 IPR036515 Transposase IS200-like superfamily Eco28_RS14840 IPR023406 DNA topoisomerase, type IA, active site Eco28_RS14840 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type Eco28_RS14840 IPR005733 DNA topoisomerase I, bacterial-type Eco28_RS14840 IPR023405 DNA topoisomerase, type IA, core domain Eco28_RS14840 IPR028612 DNA topoisomerase I, type IA Eco28_RS14840 IPR000380 DNA topoisomerase, type IA Eco28_RS14840 IPR003602 DNA topoisomerase, type IA, DNA-binding domain Eco28_RS14840 IPR006171 TOPRIM domain Eco28_RS14840 IPR034149 DNA topoisomerase 1, TOPRIM domain Eco28_RS14840 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Eco28_RS14840 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Eco28_RS14840 IPR013497 DNA topoisomerase, type IA, central Eco28_RS14840 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Eco28_RS14840 IPR013498 DNA topoisomerase, type IA, zn finger Eco28_RS14840 IPR003601 DNA topoisomerase, type IA, domain 2 Eco28_RS14850 IPR038191 YciN superfamily Eco28_RS14850 IPR019633 Protein of unknown function DUF2498 Eco28_RS14855 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS14855 IPR013703 Peptidase S49, N-terminal proteobacteria Eco28_RS14855 IPR002142 Peptidase S49 Eco28_RS14860 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS14860 IPR036291 NAD(P)-binding domain superfamily Eco28_RS14860 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS14865 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS14865 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain Eco28_RS14865 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR Eco28_RS14870 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS14870 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site Eco28_RS14870 IPR006145 Pseudouridine synthase, RsuA/RluA Eco28_RS14870 IPR036986 RNA-binding S4 domain superfamily Eco28_RS14870 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F Eco28_RS14870 IPR002942 RNA-binding S4 domain Eco28_RS14875 IPR018702 Protein of unknown function DUF2207, membrane Eco28_RS14880 IPR006070 YrdC-like domain Eco28_RS14880 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Eco28_RS14885 IPR016195 Polymerase/histidinol phosphatase-like Eco28_RS14885 IPR004013 PHP domain Eco28_RS14885 IPR003141 Polymerase/histidinol phosphatase, N-terminal Eco28_RS14890 IPR015890 Chorismate-utilising enzyme, C-terminal Eco28_RS14890 IPR005801 ADC synthase Eco28_RS14890 IPR019999 Anthranilate synthase component I-like Eco28_RS14890 IPR005257 Anthranilate synthase component I, TrpE-like, bacterial Eco28_RS14890 IPR006805 Anthranilate synthase component I, N-terminal Eco28_RS14895 IPR029062 Class I glutamine amidotransferase-like Eco28_RS14895 IPR017459 Glycosyl transferase family 3, N-terminal domain Eco28_RS14895 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Eco28_RS14895 IPR017926 Glutamine amidotransferase Eco28_RS14895 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain Eco28_RS14895 IPR005940 Anthranilate phosphoribosyl transferase Eco28_RS14895 IPR000312 Glycosyl transferase, family 3 Eco28_RS14895 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Eco28_RS14900 IPR013785 Aldolase-type TIM barrel Eco28_RS14900 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) Eco28_RS14900 IPR001468 Indole-3-glycerol phosphate synthase, conserved site Eco28_RS14900 IPR013798 Indole-3-glycerol phosphate synthase Eco28_RS14900 IPR011060 Ribulose-phosphate binding barrel Eco28_RS14905 IPR006654 Tryptophan synthase, beta chain Eco28_RS14905 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Eco28_RS14905 IPR001926 Pyridoxal-phosphate dependent enzyme Eco28_RS14905 IPR023026 Tryptophan synthase beta chain/beta chain-like Eco28_RS14905 IPR006653 Tryptophan synthase, beta chain, conserved site Eco28_RS14910 IPR011060 Ribulose-phosphate binding barrel Eco28_RS14910 IPR002028 Tryptophan synthase, alpha chain Eco28_RS14910 IPR013785 Aldolase-type TIM barrel Eco28_RS14910 IPR018204 Tryptophan synthase, alpha chain, active site Eco28_RS14915 IPR019626 Stress-induced protein, KGG, repeat Eco28_RS14920 IPR009078 Ferritin-like superfamily Eco28_RS14920 IPR010287 Domain of unknown function DUF892 Eco28_RS14920 IPR012347 Ferritin-like Eco28_RS14925 IPR010287 Domain of unknown function DUF892 Eco28_RS14925 IPR012347 Ferritin-like Eco28_RS14925 IPR009078 Ferritin-like superfamily Eco28_RS14930 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS14930 IPR005618 Outer membrane protein, OmpW Eco28_RS14935 IPR009627 Uncharacterised protein family UPF0259 Eco28_RS14940 IPR006008 Intracellular septation protein A Eco28_RS14945 IPR006683 Thioesterase domain Eco28_RS14945 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase Eco28_RS14945 IPR029069 HotDog domain superfamily Eco28_RS14945 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain Eco28_RS14950 IPR003538 Gram-negative bacterial TonB protein Eco28_RS14950 IPR006260 TonB/TolA, C-terminal Eco28_RS14950 IPR037682 TonB, C-terminal Eco28_RS14955 IPR005545 YCII-related Eco28_RS14955 IPR011008 Dimeric alpha-beta barrel Eco28_RS14960 IPR036291 NAD(P)-binding domain superfamily Eco28_RS14960 IPR003148 Regulator of K+ conductance, N-terminal Eco28_RS14960 IPR013099 Potassium channel domain Eco28_RS14970 IPR027379 Cardiolipin synthase N-terminal Eco28_RS14970 IPR025202 Phospholipase D-like domain Eco28_RS14970 IPR001736 Phospholipase D/Transphosphatidylase Eco28_RS14970 IPR022924 Cardiolipin synthase Eco28_RS14970 IPR030840 Cardiolipin synthase A Eco28_RS14975 IPR036763 Putative dsDNA mimic superfamily Eco28_RS14975 IPR007376 dsDNA mimic, putative Eco28_RS14980 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS14980 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Eco28_RS14980 IPR003593 AAA+ ATPase domain Eco28_RS14980 IPR017871 ABC transporter, conserved site Eco28_RS14980 IPR003439 ABC transporter-like Eco28_RS14985 IPR017871 ABC transporter, conserved site Eco28_RS14985 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Eco28_RS14985 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS14985 IPR003593 AAA+ ATPase domain Eco28_RS14985 IPR003439 ABC transporter-like Eco28_RS14990 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Eco28_RS14990 IPR035906 MetI-like superfamily Eco28_RS14990 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS14995 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS14995 IPR035906 MetI-like superfamily Eco28_RS15000 IPR000914 Solute-binding protein family 5 domain Eco28_RS15000 IPR023765 Solute-binding protein family 5, conserved site Eco28_RS15000 IPR039424 Solute-binding protein family 5 Eco28_RS15000 IPR030678 Peptide/nickel binding protein, MppA-type Eco28_RS15010 IPR002771 Multiple antibiotic resistance (MarC)-related Eco28_RS15015 IPR034789 Bifunctional aldehyde-alcohol dehydrogenase, C-terminal domain Eco28_RS15015 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS15015 IPR012079 Bifunctional aldehyde-alcohol dehydrogenase Eco28_RS15015 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA Eco28_RS15015 IPR018211 Alcohol dehydrogenase, iron-type, conserved site Eco28_RS15015 IPR015590 Aldehyde dehydrogenase domain Eco28_RS15015 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS15015 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS15015 IPR039697 Iron-type alcohol dehydrogenase-like Eco28_RS15020 IPR001267 Thymidine kinase Eco28_RS15020 IPR020633 Thymidine kinase, conserved site Eco28_RS15020 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15025 IPR027454 Histone-like protein H-NS, N-terminal Eco28_RS15025 IPR001801 Histone-like protein H-NS Eco28_RS15025 IPR037150 Histone-like protein H-NS, C-terminal domain superfamily Eco28_RS15025 IPR027444 Histone-like protein H-NS, C-terminal domain Eco28_RS15030 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type Eco28_RS15030 IPR005835 Nucleotidyl transferase domain Eco28_RS15030 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS15035 IPR028616 Regulator of RpoS Eco28_RS15035 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS15035 IPR036457 PPM-type phosphatase domain superfamily Eco28_RS15035 IPR011006 CheY-like superfamily Eco28_RS15035 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS15040 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Eco28_RS15040 IPR001423 Lysophospholipase patatin, conserved site Eco28_RS15040 IPR002641 Patatin-like phospholipase domain Eco28_RS15045 IPR032710 NTF2-like domain superfamily Eco28_RS15045 IPR023006 Uncharacterised protein family UPF0225 Eco28_RS15045 IPR004027 SEC-C motif Eco28_RS15050 IPR004810 Formyltetrahydrofolate deformylase Eco28_RS15050 IPR036477 Formyl transferase, N-terminal domain superfamily Eco28_RS15050 IPR002376 Formyl transferase, N-terminal Eco28_RS15050 IPR002912 ACT domain Eco28_RS15050 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain Eco28_RS15075 IPR036197 NarG-like superfamily Eco28_RS15075 IPR003816 Nitrate reductase, gamma subunit Eco28_RS15075 IPR023234 NarG-like domain Eco28_RS15080 IPR036411 TorD-like superfamily Eco28_RS15080 IPR042291 Nitrate reductase chaperone, NarJ, domain 2 Eco28_RS15080 IPR020945 DMSO/Nitrate reductase chaperone Eco28_RS15080 IPR003765 Nitrate reductase chaperone, NarJ Eco28_RS15080 IPR042290 Nitrate reductase chaperone, NarJ, domain 1 Eco28_RS15085 IPR006547 Nitrate reductase, beta subunit Eco28_RS15085 IPR038262 Nitrate reductase beta, C-terminal domain superfamily Eco28_RS15085 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS15085 IPR029263 Respiratory nitrate reductase beta, C-terminal Eco28_RS15090 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS15090 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS15090 IPR006468 Nitrate reductase, alpha subunit Eco28_RS15090 IPR028189 Nitrate reductase, alpha subunit, N-terminal Eco28_RS15090 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site Eco28_RS15090 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS15090 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS15090 IPR006656 Molybdopterin oxidoreductase Eco28_RS15090 IPR037943 Nitrate reductase alpha subunit-like, MopB domain Eco28_RS15095 IPR036259 MFS transporter superfamily Eco28_RS15095 IPR004737 Nitrate transporter Eco28_RS15095 IPR011701 Major facilitator superfamily Eco28_RS15105 IPR029095 NarX-like, N-terminal Eco28_RS15105 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain Eco28_RS15105 IPR003660 HAMP domain Eco28_RS15105 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS15105 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS15105 IPR016380 Signal transduction histidine kinase, nitrate/nitrite-sensing Eco28_RS15105 IPR042295 NarX-like, N-terminal domain superfamily Eco28_RS15105 IPR005467 Histidine kinase domain Eco28_RS15110 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS15110 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS15110 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS15110 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS15110 IPR011006 CheY-like superfamily Eco28_RS15115 IPR038177 Inverse autotransporter, beta-domain superfamily Eco28_RS15115 IPR024519 Inverse autotransporter, beta-domain Eco28_RS15120 IPR003787 Sulphur relay, DsrE/F-like protein Eco28_RS15120 IPR027396 DsrEFH-like Eco28_RS15125 IPR006840 Glutathione-specific gamma-glutamylcyclotransferase Eco28_RS15125 IPR013024 Gamma-glutamyl cyclotransferase-like Eco28_RS15125 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily Eco28_RS15130 IPR037205 ChaB superfamily Eco28_RS15130 IPR009317 ChaB Eco28_RS15135 IPR004837 Sodium/calcium exchanger membrane region Eco28_RS15135 IPR004713 Calcium/proton exchanger Eco28_RS15145 IPR025253 Type I toxin-antitoxin system, toxin Ldr Eco28_RS15155 IPR025253 Type I toxin-antitoxin system, toxin Ldr Eco28_RS15160 IPR013785 Aldolase-type TIM barrel Eco28_RS15160 IPR006269 3-deoxy-8-phosphooctulonate synthase Eco28_RS15160 IPR006218 DAHP synthetase I/KDSA Eco28_RS15165 IPR032698 Protein SirB1, N-terminal Eco28_RS15170 IPR007360 Invasion gene expression up-regulator, SirB Eco28_RS15175 IPR025714 Methyltransferase domain Eco28_RS15175 IPR040758 Release factor glutamine methyltransferase, N-terminal domain Eco28_RS15175 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS15175 IPR004556 Methyltransferase HemK-like Eco28_RS15175 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS15175 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific Eco28_RS15180 IPR000352 Peptide chain release factor class I Eco28_RS15180 IPR004373 Peptide chain release factor 1 Eco28_RS15180 IPR005139 Peptide chain release factor Eco28_RS15185 IPR018214 Glutamyl-tRNA reductase, conserved site Eco28_RS15185 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain Eco28_RS15185 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase Eco28_RS15185 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase Eco28_RS15185 IPR036291 NAD(P)-binding domain superfamily Eco28_RS15185 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily Eco28_RS15185 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily Eco28_RS15185 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal Eco28_RS15190 IPR029046 Lipoprotein localisation LolA/LolB/LppX Eco28_RS15190 IPR004565 Outer membrane lipoprotein LolB Eco28_RS15195 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Eco28_RS15195 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS15195 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS15195 IPR006204 GHMP kinase N-terminal domain Eco28_RS15195 IPR036554 GHMP kinase, C-terminal domain superfamily Eco28_RS15195 IPR013750 GHMP kinase, C-terminal domain Eco28_RS15200 IPR005946 Ribose-phosphate pyrophosphokinase Eco28_RS15200 IPR029057 Phosphoribosyltransferase-like Eco28_RS15200 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type Eco28_RS15200 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain Eco28_RS15200 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site Eco28_RS15200 IPR000836 Phosphoribosyltransferase domain Eco28_RS15205 IPR036513 STAS domain superfamily Eco28_RS15205 IPR002645 STAS domain Eco28_RS15205 IPR001902 SLC26A/SulP transporter Eco28_RS15205 IPR018045 Sulphate anion transporter, conserved site Eco28_RS15205 IPR011547 SLC26A/SulP transporter domain Eco28_RS15210 IPR019698 Protein of unknown function DUF2583 Eco28_RS15215 IPR036416 Peptidyl-tRNA hydrolase superfamily Eco28_RS15215 IPR001328 Peptidyl-tRNA hydrolase Eco28_RS15215 IPR018171 Peptidyl-tRNA hydrolase, conserved site Eco28_RS15220 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 Eco28_RS15220 IPR012675 Beta-grasp domain superfamily Eco28_RS15220 IPR031167 OBG-type guanine nucleotide-binding (G) domain Eco28_RS15220 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15220 IPR004095 TGS Eco28_RS15220 IPR012676 TGS-like Eco28_RS15220 IPR023192 TGS-like domain superfamily Eco28_RS15220 IPR013029 YchF, C-terminal domain Eco28_RS15220 IPR041706 YchF, N-terminal Eco28_RS15220 IPR006073 GTP binding domain Eco28_RS15235 IPR011050 Pectin lyase fold/virulence factor Eco28_RS15235 IPR006315 Outer membrane autotransporter barrel Eco28_RS15235 IPR005546 Autotransporter beta-domain Eco28_RS15235 IPR036709 Autotransporter beta-domain superfamily Eco28_RS15235 IPR003991 Pertactin virulence factor family Eco28_RS15235 IPR004899 Pertactin, central region Eco28_RS15240 IPR029016 GAF-like domain superfamily Eco28_RS15240 IPR003593 AAA+ ATPase domain Eco28_RS15240 IPR000014 PAS domain Eco28_RS15240 IPR035965 PAS domain superfamily Eco28_RS15240 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15240 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS15240 IPR013767 PAS fold Eco28_RS15240 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS15240 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS15240 IPR009057 Homeobox-like domain superfamily Eco28_RS15240 IPR002197 DNA binding HTH domain, Fis-type Eco28_RS15245 IPR012736 Dihydroxyacetone kinase DhaK, subunit 1 Eco28_RS15245 IPR004006 DhaK domain Eco28_RS15250 IPR012737 Dihydroxyacetone kinase, subunit L Eco28_RS15250 IPR004007 DhaL domain Eco28_RS15250 IPR036117 DhaL domain superfamily Eco28_RS15255 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily Eco28_RS15255 IPR008731 Phosphotransferase system, enzyme I N-terminal Eco28_RS15255 IPR012844 Dihydroxyacetone kinase phosphotransferase subunit, N-terminal domain Eco28_RS15255 IPR036637 Phosphohistidine domain superfamily Eco28_RS15255 IPR008279 PEP-utilising enzyme, mobile domain Eco28_RS15255 IPR035895 HPr-like superfamily Eco28_RS15255 IPR000032 Phosphocarrier protein HPr-like Eco28_RS15255 IPR036618 PtsI, HPr-binding domain superfamily Eco28_RS15255 IPR039643 Dihydroxyacetone kinase phosphotransferase subunit DhaM Eco28_RS15255 IPR004701 Phosphotransferase system, mannose-type IIA component Eco28_RS15255 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Eco28_RS15265 IPR008928 Six-hairpin glycosidase superfamily Eco28_RS15265 IPR023720 Trehalase, periplasmic Eco28_RS15265 IPR012341 Six-hairpin glycosidase-like superfamily Eco28_RS15265 IPR018232 Glycoside hydrolase, family 37, conserved site Eco28_RS15265 IPR001661 Glycoside hydrolase, family 37 Eco28_RS15275 IPR002491 ABC transporter periplasmic binding domain Eco28_RS15280 IPR037294 ABC transporter, BtuC-like Eco28_RS15280 IPR000522 ABC transporter, permease protein, BtuC-like Eco28_RS15285 IPR003593 AAA+ ATPase domain Eco28_RS15285 IPR003439 ABC transporter-like Eco28_RS15285 IPR017871 ABC transporter, conserved site Eco28_RS15285 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15290 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS15290 IPR041698 Methyltransferase domain 25 Eco28_RS15295 IPR006242 Putative pyrophosphorylase ModD Eco28_RS15295 IPR013785 Aldolase-type TIM barrel Eco28_RS15295 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal Eco28_RS15295 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily Eco28_RS15295 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal Eco28_RS15295 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal Eco28_RS15295 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Eco28_RS15305 IPR007341 Transglycosylase-associated protein Eco28_RS15310 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal Eco28_RS15310 IPR023787 Type III secretion system flagellar brake protein YcgR Eco28_RS15310 IPR009875 PilZ domain Eco28_RS15315 IPR023946 Endo-type membrane-bound lytic murein transglycosylase A Eco28_RS15315 IPR023346 Lysozyme-like domain superfamily Eco28_RS15315 IPR000189 Prokaryotic transglycosylase, active site Eco28_RS15315 IPR008258 Transglycosylase SLT domain 1 Eco28_RS15325 IPR029062 Class I glutamine amidotransferase-like Eco28_RS15325 IPR040449 LD-carboxypeptidase, N-terminal Eco28_RS15325 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal Eco28_RS15325 IPR003507 Peptidase family S66 Eco28_RS15325 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily Eco28_RS15325 IPR040921 LD-carboxypeptidase, C-terminal Eco28_RS15330 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS15330 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS15330 IPR030151 K(+)/H(+) antiporter NhaP Eco28_RS15330 IPR023729 K(+)/H(+) antiporter NhaP2 Eco28_RS15330 IPR006037 Regulator of K+ conductance, C-terminal Eco28_RS15330 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Eco28_RS15330 IPR006153 Cation/H+ exchanger Eco28_RS15330 IPR038770 Sodium/solute symporter superfamily Eco28_RS15330 IPR005170 Transporter-associated domain Eco28_RS15340 IPR011079 Alanine racemase, C-terminal Eco28_RS15340 IPR001608 Alanine racemase, N-terminal Eco28_RS15340 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site Eco28_RS15340 IPR029066 PLP-binding barrel Eco28_RS15340 IPR000821 Alanine racemase Eco28_RS15340 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Eco28_RS15345 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS15345 IPR023080 D-amino acid dehydrogenase DadA Eco28_RS15345 IPR006076 FAD dependent oxidoreductase Eco28_RS15350 IPR007390 Sporulation stage V, protein R Eco28_RS15355 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS15355 IPR000524 Transcription regulator HTH, GntR Eco28_RS15355 IPR028374 FadR, C-terminal domain Eco28_RS15355 IPR014178 Fatty acid response transcription factor FadR Eco28_RS15355 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS15355 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS15360 IPR004671 Na+/H+ antiporter NhaB Eco28_RS15365 IPR003752 Disulphide bond formation protein DsbB/BdbC Eco28_RS15365 IPR022920 Disulphide bond formation protein DsbB Eco28_RS15365 IPR023380 DsbB-like superfamily Eco28_RS15370 IPR017961 DNA polymerase, Y-family, little finger domain Eco28_RS15370 IPR036775 DNA polymerase, Y-family, little finger domain superfamily Eco28_RS15370 IPR001126 UmuC domain Eco28_RS15370 IPR025188 Domain of unknown function DUF4113 Eco28_RS15370 IPR024728 DNA polymerase type-Y, HhH motif Eco28_RS15375 IPR006197 Peptidase S24, LexA-like Eco28_RS15375 IPR036286 LexA/Signal peptidase-like superfamily Eco28_RS15375 IPR015927 Peptidase S24/S26A/S26B/S26C Eco28_RS15375 IPR039418 LexA-like Eco28_RS15380 IPR027018 Hemolysin E Eco28_RS15385 IPR005358 Putative zinc- or iron-chelating domain containing protein Eco28_RS15385 IPR008228 Uncharacterised conserved protein UCP006173 Eco28_RS15390 IPR011234 Fumarylacetoacetase-like, C-terminal Eco28_RS15390 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily Eco28_RS15395 IPR038068 YcgL-like superfamily Eco28_RS15395 IPR027354 YcgL domain Eco28_RS15405 IPR007280 Peptidase, C-terminal, archaeal/bacterial Eco28_RS15410 IPR008617 Uncharacterised protein family, YcgJ Eco28_RS15420 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal Eco28_RS15420 IPR013033 Septum formation inhibitor MinC Eco28_RS15420 IPR007874 Septum formation inhibitor MinC, N-terminal Eco28_RS15420 IPR038061 MinC, Proteobacteria, N-terminal domain superfamily Eco28_RS15420 IPR005526 Septum formation inhibitor MinC, C-terminal Eco28_RS15420 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily Eco28_RS15425 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15425 IPR010223 ATP binding protein MinD, bacterial-type Eco28_RS15425 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Eco28_RS15425 IPR025501 ATP binding protein MinD Eco28_RS15430 IPR036707 Cell division topological specificity factor MinE superfamily Eco28_RS15430 IPR005527 Cell division topological specificity factor MinE Eco28_RS15435 IPR005546 Autotransporter beta-domain Eco28_RS15435 IPR006315 Outer membrane autotransporter barrel Eco28_RS15435 IPR003991 Pertactin virulence factor family Eco28_RS15435 IPR036709 Autotransporter beta-domain superfamily Eco28_RS15450 IPR022833 Uncharacterised protein family UPF0757, YmgG Eco28_RS15450 IPR025693 Glycine-zipper-containing OmpA-like membrane domain Eco28_RS15455 IPR032497 Uncharacterised protein YmgD Eco28_RS15455 IPR038304 YmgD domain superfamily Eco28_RS15460 IPR006315 Outer membrane autotransporter barrel Eco28_RS15460 IPR005546 Autotransporter beta-domain Eco28_RS15460 IPR011050 Pectin lyase fold/virulence factor Eco28_RS15460 IPR036709 Autotransporter beta-domain superfamily Eco28_RS15475 IPR035919 EAL domain superfamily Eco28_RS15475 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Eco28_RS15475 IPR001633 EAL domain Eco28_RS15485 IPR024753 Regulatory protein AriR Eco28_RS15495 IPR024753 Regulatory protein AriR Eco28_RS15500 IPR036046 Acylphosphatase-like domain superfamily Eco28_RS15500 IPR001633 EAL domain Eco28_RS15500 IPR035919 EAL domain superfamily Eco28_RS15500 IPR007024 BLUF domain Eco28_RS15505 IPR009061 Putative DNA-binding domain superfamily Eco28_RS15505 IPR000551 MerR-type HTH domain Eco28_RS15510 IPR009833 Uncharacterised protein DUF1398 Eco28_RS15510 IPR036696 YdfO-like superfamily Eco28_RS15515 IPR036515 Transposase IS200-like superfamily Eco28_RS15515 IPR002686 Transposase IS200-like Eco28_RS15530 IPR014448 Anti-adapter protein IraM Eco28_RS15535 IPR024084 Isopropylmalate dehydrogenase-like domain Eco28_RS15535 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic Eco28_RS15535 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site Eco28_RS15540 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain Eco28_RS15540 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS15540 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F Eco28_RS15540 IPR006145 Pseudouridine synthase, RsuA/RluA Eco28_RS15540 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site Eco28_RS15545 IPR020476 NUDIX hydrolase Eco28_RS15545 IPR020084 NUDIX hydrolase, conserved site Eco28_RS15545 IPR000086 NUDIX hydrolase domain Eco28_RS15545 IPR033713 Phosphatase NudJ Eco28_RS15545 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS15550 IPR004506 tRNA-specific 2-thiouridylase Eco28_RS15550 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS15550 IPR023382 Adenine nucleotide alpha hydrolase-like domains Eco28_RS15555 IPR007451 High frequency lysogenization protein HflD Eco28_RS15555 IPR035932 HflD-like superfamily Eco28_RS15560 IPR022761 Fumarate lyase, N-terminal Eco28_RS15560 IPR008948 L-Aspartase-like Eco28_RS15560 IPR004769 Adenylosuccinate lyase Eco28_RS15560 IPR013539 Adenylosuccinate lyase PurB, C-terminal Eco28_RS15560 IPR000362 Fumarate lyase family Eco28_RS15560 IPR024083 Fumarase/histidase, N-terminal Eco28_RS15560 IPR020557 Fumarate lyase, conserved site Eco28_RS15565 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS15565 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS15565 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS15565 IPR011006 CheY-like superfamily Eco28_RS15565 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS15570 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS15570 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS15570 IPR005467 Histidine kinase domain Eco28_RS15570 IPR003660 HAMP domain Eco28_RS15570 IPR038429 PhoQ Sensor superfamily Eco28_RS15570 IPR015014 PhoQ Sensor Eco28_RS15570 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS15570 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS15575 IPR039994 JmjC domain-containing Eco28_RS15575 IPR003347 JmjC domain Eco28_RS15580 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site Eco28_RS15580 IPR036264 Bacterial exopeptidase dimerisation domain Eco28_RS15580 IPR002933 Peptidase M20 Eco28_RS15580 IPR010161 Peptidase M20B, tripeptide aminopeptidase Eco28_RS15580 IPR011650 Peptidase M20, dimerisation domain Eco28_RS15590 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit Eco28_RS15590 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15590 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS15590 IPR017871 ABC transporter, conserved site Eco28_RS15590 IPR003439 ABC transporter-like Eco28_RS15590 IPR017879 ABC transporter, spermidine/putrescine import ATP-binding protein, PotA Eco28_RS15590 IPR003593 AAA+ ATPase domain Eco28_RS15590 IPR013611 Transport-associated OB, type 2 Eco28_RS15595 IPR035906 MetI-like superfamily Eco28_RS15595 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS15600 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS15600 IPR035906 MetI-like superfamily Eco28_RS15605 IPR006059 Bacterial extracellular solute-binding protein Eco28_RS15605 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein Eco28_RS15610 IPR026591 Sirtuin, catalytic core small domain superfamily Eco28_RS15610 IPR003000 Sirtuin family Eco28_RS15610 IPR027546 Sirtuin, class III Eco28_RS15610 IPR026590 Sirtuin family, catalytic core domain Eco28_RS15610 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS15615 IPR023505 N-acetyl-D-glucosamine kinase Eco28_RS15615 IPR000600 ROK family Eco28_RS15620 IPR003838 ABC transporter permease protein domain Eco28_RS15620 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E Eco28_RS15620 IPR011926 Lipoprotein-releasing system transmembrane protein LolE, gammaproteobacteria type Eco28_RS15620 IPR025857 MacB-like periplasmic core domain Eco28_RS15625 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15625 IPR003593 AAA+ ATPase domain Eco28_RS15625 IPR011924 Lipoprotein releasing system, ATP-binding protein Eco28_RS15625 IPR003439 ABC transporter-like Eco28_RS15625 IPR017871 ABC transporter, conserved site Eco28_RS15625 IPR015854 ABC transporter, lipoprotein release, LolD Eco28_RS15630 IPR003838 ABC transporter permease protein domain Eco28_RS15630 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E Eco28_RS15630 IPR025857 MacB-like periplasmic core domain Eco28_RS15635 IPR002656 Acyltransferase 3 Eco28_RS15640 IPR011545 DEAD/DEAH box helicase domain Eco28_RS15640 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS15640 IPR005118 Transcription-repair-coupling factor, C-terminal domain Eco28_RS15640 IPR004576 Transcription-repair coupling factor Eco28_RS15640 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15640 IPR037235 TRCF-like, C-terminal domain Eco28_RS15640 IPR003711 CarD-like/TRCF domain Eco28_RS15640 IPR041471 UvrB, interaction domain Eco28_RS15640 IPR001650 Helicase, C-terminal Eco28_RS15640 IPR036101 CarD-like/TRCF domain superfamily Eco28_RS15645 IPR038063 L,D-transpeptidase catalytic domain-like Eco28_RS15645 IPR018392 LysM domain Eco28_RS15645 IPR005490 L,D-transpeptidase catalytic domain Eco28_RS15645 IPR041597 L,D-transpeptidase C-terminal domain Eco28_RS15650 IPR010854 Domain of unknown function DUF1471 Eco28_RS15650 IPR036275 YdgH-like superfamily Eco28_RS15650 IPR025543 Dodecin-like Eco28_RS15655 IPR009057 Homeobox-like domain superfamily Eco28_RS15655 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS15655 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS15660 IPR008816 Glycine zipper 2TM domain Eco28_RS15670 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS15670 IPR023753 FAD/NAD(P)-binding domain Eco28_RS15675 IPR022987 Uncharacterised protein family UPF0227 Eco28_RS15675 IPR029058 Alpha/Beta hydrolase fold Eco28_RS15675 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA Eco28_RS15680 IPR022956 Beta-hexosaminidase, bacterial Eco28_RS15680 IPR001764 Glycoside hydrolase, family 3, N-terminal Eco28_RS15680 IPR017853 Glycoside hydrolase superfamily Eco28_RS15680 IPR019800 Glycoside hydrolase, family 3, active site Eco28_RS15680 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily Eco28_RS15685 IPR011009 Protein kinase-like domain superfamily Eco28_RS15685 IPR002575 Aminoglycoside phosphotransferase Eco28_RS15685 IPR014093 Thiamine kinase Eco28_RS15690 IPR014094 Penicillin-binding protein activator LpoB Eco28_RS15695 IPR010824 Protein of unknown function DUF1425 Eco28_RS15695 IPR038483 YcfL-like superfamily Eco28_RS15700 IPR001310 Histidine triad (HIT) protein Eco28_RS15700 IPR019808 Histidine triad, conserved site Eco28_RS15700 IPR036265 HIT-like superfamily Eco28_RS15700 IPR011146 HIT-like domain Eco28_RS15705 IPR012910 TonB-dependent receptor, plug domain Eco28_RS15705 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS15705 IPR039423 TonB-dependent receptor-like Eco28_RS15705 IPR010917 TonB-dependent receptor, conserved site Eco28_RS15705 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS15705 IPR010105 TonB-dependent siderophore receptor Eco28_RS15705 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS15705 IPR010916 TonB box, conserved site Eco28_RS15710 IPR007684 Zinc finger, Ogr/Delta-type Eco28_RS15745 IPR035089 Tail sheath protein, subtilisin-like domain Eco28_RS15745 IPR020287 Tail sheath protein, C-terminal domain Eco28_RS15750 IPR009057 Homeobox-like domain superfamily Eco28_RS15750 IPR006119 Resolvase, N-terminal catalytic domain Eco28_RS15750 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily Eco28_RS15750 IPR006120 Resolvase, HTH domain Eco28_RS15750 IPR006118 Recombinase, conserved site Eco28_RS15755 IPR037053 Phage tail collar domain superfamily Eco28_RS15755 IPR011083 Phage tail collar domain Eco28_RS15760 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS15860 IPR006430 Phage portal protein PBSX family Eco28_RS15860 IPR030935 Phage portal protein PBSX family, Proteobacteria Eco28_RS15880 IPR010391 DNA damage-inducible protein DinI-like Eco28_RS15880 IPR036687 DinI-like superfamily Eco28_RS15890 IPR008766 Replication gene A protein Eco28_RS15895 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS15895 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS15895 IPR012327 D12 class N6 adenine-specific DNA methyltransferase Eco28_RS15895 IPR023095 Adenine-specific methyltransferase, domain 2 Eco28_RS15895 IPR012263 Adenine modification methylase, M.EcoRV-type Eco28_RS15900 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Eco28_RS15900 IPR000962 Zinc finger, DksA/TraR C4-type Eco28_RS15900 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Eco28_RS15910 IPR035232 Protein of unknown function DUF5347 Eco28_RS15920 IPR009679 Bacteriophage 186, CII Eco28_RS15930 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS15930 IPR032499 Bacteriophage CI repressor, C-terminal Eco28_RS15930 IPR010744 Bacteriophage CI repressor Eco28_RS15940 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS15940 IPR023009 Tyrosine recombinase XerC/XerD Eco28_RS15940 IPR010998 Integrase/recombinase, N-terminal Eco28_RS15940 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS15940 IPR002104 Integrase, catalytic domain Eco28_RS15940 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS15950 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS15950 IPR012910 TonB-dependent receptor, plug domain Eco28_RS15950 IPR010105 TonB-dependent siderophore receptor Eco28_RS15950 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS15950 IPR010917 TonB-dependent receptor, conserved site Eco28_RS15950 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS15950 IPR010916 TonB box, conserved site Eco28_RS15950 IPR039423 TonB-dependent receptor-like Eco28_RS15955 IPR036878 Glucose permease domain IIB Eco28_RS15955 IPR011299 PTS system glucose-specific IIBC component Eco28_RS15955 IPR001996 Phosphotransferase system, IIB component, type 1 Eco28_RS15955 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Eco28_RS15955 IPR003352 Phosphotransferase system, EIIC Eco28_RS15955 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Eco28_RS15955 IPR013013 Phosphotransferase system, EIIC component, type 1 Eco28_RS15960 IPR015991 Uncharacterised hydrolase TatD-type Eco28_RS15960 IPR001130 TatD family Eco28_RS15960 IPR018228 Deoxyribonuclease, TatD-related, conserved site Eco28_RS15960 IPR032466 Metal-dependent hydrolase Eco28_RS15965 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15965 IPR015199 DNA polymerase III, delta subunit, C-terminal Eco28_RS15965 IPR004622 DNA polymerase III, delta prime subunit Eco28_RS15965 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal Eco28_RS15970 IPR018094 Thymidylate kinase Eco28_RS15970 IPR018095 Thymidylate kinase, conserved site Eco28_RS15970 IPR039430 Thymidylate kinase-like domain Eco28_RS15970 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS15975 IPR003770 Endolytic murein transglycosylase Eco28_RS15980 IPR001544 Aminotransferase class IV Eco28_RS15980 IPR036038 Aminotransferase-like, PLP-dependent enzymes Eco28_RS15980 IPR017824 Aminodeoxychorismate lyase, class IV Eco28_RS15980 IPR018300 Aminotransferase, class IV, conserved site Eco28_RS15985 IPR016039 Thiolase-like Eco28_RS15985 IPR000794 Beta-ketoacyl synthase Eco28_RS15985 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Eco28_RS15985 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 Eco28_RS15985 IPR018201 Beta-ketoacyl synthase, active site Eco28_RS15985 IPR014031 Beta-ketoacyl synthase, C-terminal Eco28_RS15985 IPR014030 Beta-ketoacyl synthase, N-terminal Eco28_RS15990 IPR006162 Phosphopantetheine attachment site Eco28_RS15990 IPR009081 Phosphopantetheine binding ACP domain Eco28_RS15990 IPR003231 Acyl carrier protein (ACP) Eco28_RS15990 IPR036736 ACP-like superfamily Eco28_RS15995 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase Eco28_RS15995 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS15995 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS15995 IPR036291 NAD(P)-binding domain superfamily Eco28_RS16000 IPR014043 Acyl transferase Eco28_RS16000 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Eco28_RS16000 IPR001227 Acyl transferase domain superfamily Eco28_RS16000 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Eco28_RS16000 IPR024925 Malonyl CoA-acyl carrier protein transacylase Eco28_RS16000 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type Eco28_RS16005 IPR016039 Thiolase-like Eco28_RS16005 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal Eco28_RS16005 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Eco28_RS16005 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 Eco28_RS16010 IPR003664 Fatty acid synthesis PlsX protein Eco28_RS16010 IPR012281 Phospholipid biosynthesis protein, PlsX-like Eco28_RS16015 IPR011332 Zinc-binding ribosomal protein Eco28_RS16015 IPR002677 Ribosomal protein L32p Eco28_RS16020 IPR003772 Large ribosomal RNA subunit accumulation protein YceD Eco28_RS16020 IPR039255 Large ribosomal RNA subunit accumulation protein YceD, bacteria Eco28_RS16025 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein Eco28_RS16025 IPR029001 Inosine triphosphate pyrophosphatase-like Eco28_RS16030 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS16030 IPR006145 Pseudouridine synthase, RsuA/RluA Eco28_RS16030 IPR002942 RNA-binding S4 domain Eco28_RS16030 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site Eco28_RS16030 IPR006225 Pseudouridine synthase, RluC/RluD Eco28_RS16030 IPR036986 RNA-binding S4 domain superfamily Eco28_RS16040 IPR028878 Ribonuclease E Eco28_RS16040 IPR003029 S1 domain Eco28_RS16040 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS16040 IPR022967 RNA-binding domain, S1 Eco28_RS16040 IPR021968 Polyribonucleotide phosphorylase C-terminal Eco28_RS16040 IPR004659 Ribonuclease E/G Eco28_RS16040 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G Eco28_RS16045 IPR013384 Flagellar hook-associated protein 3 Eco28_RS16045 IPR001029 Flagellin, D0/D1 domain Eco28_RS16050 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Eco28_RS16050 IPR002371 Flagellar hook-associated protein 1 Eco28_RS16050 IPR001444 Flagellar basal body rod protein, N-terminal Eco28_RS16055 IPR013377 Peptidoglycan hydrolase FlgJ Eco28_RS16055 IPR019301 Flagellar protein FlgJ, N-terminal Eco28_RS16055 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain Eco28_RS16060 IPR001782 Flagellar P-ring protein Eco28_RS16065 IPR000527 Flagellar L-ring protein Eco28_RS16070 IPR019776 Flagellar basal body rod protein, conserved site Eco28_RS16070 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Eco28_RS16070 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Eco28_RS16070 IPR012834 Flagellar basal-body rod FlgG Eco28_RS16070 IPR001444 Flagellar basal body rod protein, N-terminal Eco28_RS16070 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Eco28_RS16075 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Eco28_RS16075 IPR001444 Flagellar basal body rod protein, N-terminal Eco28_RS16075 IPR019776 Flagellar basal body rod protein, conserved site Eco28_RS16075 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Eco28_RS16075 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Eco28_RS16080 IPR037058 Flagellar hook protein FlgE superfamily Eco28_RS16080 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like Eco28_RS16080 IPR001444 Flagellar basal body rod protein, N-terminal Eco28_RS16080 IPR019776 Flagellar basal body rod protein, conserved site Eco28_RS16080 IPR011491 Flagellar hook protein FlgE Eco28_RS16080 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Eco28_RS16080 IPR020013 Flagellar hook-basal body protein, FlgE/F/G Eco28_RS16085 IPR005648 Flagellar hook capping protein Eco28_RS16085 IPR025963 FlgD Tudor-like domain Eco28_RS16085 IPR025965 FlgD Ig-like domain Eco28_RS16090 IPR001444 Flagellar basal body rod protein, N-terminal Eco28_RS16090 IPR019776 Flagellar basal body rod protein, conserved site Eco28_RS16090 IPR010930 Flagellar basal-body/hook protein, C-terminal domain Eco28_RS16090 IPR006299 Flagellar basal-body rod protein FlgC Eco28_RS16095 IPR019776 Flagellar basal body rod protein, conserved site Eco28_RS16095 IPR001444 Flagellar basal body rod protein, N-terminal Eco28_RS16095 IPR006300 Flagellar basal-body rod protein FlgB Eco28_RS16100 IPR013974 SAF domain Eco28_RS16100 IPR039246 Flagellar protein FlgA Eco28_RS16100 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal Eco28_RS16105 IPR031316 Anti-sigma-28 factor FlgM, C-terminal Eco28_RS16105 IPR007412 Anti-sigma-28 factor, FlgM Eco28_RS16105 IPR035890 Anti-sigma-28 factor FlgM superfamily Eco28_RS16110 IPR036679 FlgN-like superfamily Eco28_RS16110 IPR007809 FlgN-like protein Eco28_RS16115 IPR004268 Peptidoglycan biosynthesis protein MurJ Eco28_RS16120 IPR036291 NAD(P)-binding domain superfamily Eco28_RS16120 IPR000683 Oxidoreductase, N-terminal Eco28_RS16125 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS16125 IPR007432 Protein of unknown function DUF480 Eco28_RS16125 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS16130 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS16130 IPR000182 GNAT domain Eco28_RS16135 IPR011701 Major facilitator superfamily Eco28_RS16135 IPR036259 MFS transporter superfamily Eco28_RS16135 IPR022855 Multidrug resistance protein MdtH Eco28_RS16135 IPR020846 Major facilitator superfamily domain Eco28_RS16140 IPR004045 Glutathione S-transferase, N-terminal Eco28_RS16140 IPR011901 Glutaredoxin-2 Eco28_RS16140 IPR036249 Thioredoxin-like superfamily Eco28_RS16140 IPR007494 Glutaredoxin 2, C-terminal Eco28_RS16140 IPR011767 Glutaredoxin active site Eco28_RS16140 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Eco28_RS16145 IPR010835 Protein of unknown function DUF1439 Eco28_RS16150 IPR006680 Amidohydrolase-related Eco28_RS16150 IPR004721 Dihydroorotase homodimeric type Eco28_RS16150 IPR002195 Dihydroorotase, conserved site Eco28_RS16150 IPR032466 Metal-dependent hydrolase Eco28_RS16155 IPR010391 DNA damage-inducible protein DinI-like Eco28_RS16155 IPR036687 DinI-like superfamily Eco28_RS16160 IPR025730 Biofilm regulator BssS Eco28_RS16165 IPR023493 N-methyl-L-tryptophan oxidase MTOX Eco28_RS16165 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS16165 IPR006076 FAD dependent oxidoreductase Eco28_RS16170 IPR024494 Protein of unknown function DUF2770 Eco28_RS16175 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Eco28_RS16175 IPR016174 Di-haem cytochrome, transmembrane Eco28_RS16180 IPR007372 Lipid/polyisoprenoid-binding, YceI-like Eco28_RS16180 IPR023480 Uncharacterised protein family UPF0312/YceI Eco28_RS16180 IPR036761 Lipid/polyisoprenoid-binding, YceI-like superfamily Eco28_RS16185 IPR020936 Uncharacterised protein family UPF0176 Eco28_RS16185 IPR040503 UPF0176, acylphosphatase-like domain Eco28_RS16185 IPR022111 Rhodanase, C-terminal Eco28_RS16185 IPR036873 Rhodanese-like domain superfamily Eco28_RS16185 IPR001763 Rhodanese-like domain Eco28_RS16190 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase Eco28_RS16190 IPR004960 Bacterial lipid A biosynthesis acyltransferase Eco28_RS16195 IPR020846 Major facilitator superfamily domain Eco28_RS16195 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG Eco28_RS16195 IPR036259 MFS transporter superfamily Eco28_RS16195 IPR023692 Multidrug resistance protein MdtG Eco28_RS16195 IPR011701 Major facilitator superfamily Eco28_RS16200 IPR025729 MsyB protein Eco28_RS16205 IPR010780 Protein of unknown function DUF1375 Eco28_RS16210 IPR001173 Glycosyltransferase 2-like Eco28_RS16210 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS16210 IPR023725 Glucan biosynthesis glucosyltransferase H Eco28_RS16215 IPR014756 Immunoglobulin E-set Eco28_RS16215 IPR023704 Glucan biosynthesis protein G Eco28_RS16215 IPR014438 Glucan biosynthesis protein MdoG/MdoD Eco28_RS16215 IPR014718 Glycoside hydrolase-type carbohydrate-binding Eco28_RS16215 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS16215 IPR013783 Immunoglobulin-like fold Eco28_RS16215 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal Eco28_RS16230 IPR023723 Glucan biosynthesis protein C Eco28_RS16230 IPR002656 Acyltransferase 3 Eco28_RS16235 IPR001736 Phospholipase D/Transphosphatidylase Eco28_RS16235 IPR025202 Phospholipase D-like domain Eco28_RS16235 IPR030871 Cardiolipin synthase C Eco28_RS16240 IPR002589 Macro domain Eco28_RS16240 IPR024900 O-acetyl-ADP-ribose deacetylase Eco28_RS16250 IPR014491 Curli production protein CsgC Eco28_RS16255 IPR009742 Curlin associated Eco28_RS16260 IPR009742 Curlin associated Eco28_RS16275 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS16275 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS16275 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS16280 IPR018900 Curli assembly protein CsgE Eco28_RS16285 IPR018893 Type VIII secretion system, CsgF Eco28_RS16290 IPR005534 Curli production assembly/transport component CsgG Eco28_RS16295 IPR009476 Protein of unknown function DUF1097 Eco28_RS16300 IPR026269 Tat proofreading chaperone DmsD-type Eco28_RS16300 IPR036411 TorD-like superfamily Eco28_RS16300 IPR020945 DMSO/Nitrate reductase chaperone Eco28_RS16305 IPR004013 PHP domain Eco28_RS16305 IPR023710 Probable phosphatase YcdX Eco28_RS16305 IPR003141 Polymerase/histidinol phosphatase, N-terminal Eco28_RS16305 IPR016195 Polymerase/histidinol phosphatase-like Eco28_RS16310 IPR036291 NAD(P)-binding domain superfamily Eco28_RS16310 IPR023514 Glyoxylate/hydroxypyruvate reductase A Eco28_RS16310 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain Eco28_RS16310 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Eco28_RS16335 IPR009610 CbtA toxin of type IV toxin-antitoxin system Eco28_RS16340 IPR038025 Antitoxin CbeA superfamily Eco28_RS16340 IPR009320 Antitoxin CbeA Eco28_RS16350 IPR009329 Protein of unknown function DUF987 Eco28_RS16355 IPR037518 MPN domain Eco28_RS16355 IPR020891 Uncharacterised protein family UPF0758, conserved site Eco28_RS16355 IPR001405 Uncharacterised protein family UPF0758 Eco28_RS16355 IPR025657 RadC-like JAB domain Eco28_RS16360 IPR004914 Antirestriction protein Eco28_RS16360 IPR042297 Antirestriction domain superfamily Eco28_RS16365 IPR026325 Protein of unknown function DUF932 Eco28_RS16385 IPR025599 YjcZ-like protein Eco28_RS16390 IPR030381 Dynamin-type guanine nucleotide-binding (G) domain Eco28_RS16390 IPR022812 Dynamin superfamily Eco28_RS16390 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS16395 IPR005546 Autotransporter beta-domain Eco28_RS16395 IPR024973 ESPR domain Eco28_RS16395 IPR030930 Adhesin of bacterial autotransporter system Eco28_RS16395 IPR036709 Autotransporter beta-domain superfamily Eco28_RS16395 IPR011050 Pectin lyase fold/virulence factor Eco28_RS16395 IPR012332 P22 tailspike-like, C-terminal domain superfamily Eco28_RS16400 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS16440 IPR035900 Colicin E immunity protein superfamily Eco28_RS16440 IPR000290 Colicin immunity protein/pyocin immunity protein Eco28_RS16455 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal Eco28_RS16455 IPR006531 Gp5 N-terminal Eco28_RS16455 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Eco28_RS16455 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain Eco28_RS16455 IPR037026 Vgr protein, OB-fold domain superfamily Eco28_RS16455 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Eco28_RS16510 IPR006531 Gp5 N-terminal Eco28_RS16510 IPR028244 Putative type VI secretion system, Rhs element associated Vgr domain Eco28_RS16510 IPR018769 Domain of unknown function DUF2345, Vgr C-terminal Eco28_RS16510 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Eco28_RS16510 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Eco28_RS16510 IPR037026 Vgr protein, OB-fold domain superfamily Eco28_RS16515 IPR018368 ClpA/B, conserved site 1 Eco28_RS16515 IPR036628 Clp, N-terminal domain superfamily Eco28_RS16515 IPR019489 Clp ATPase, C-terminal Eco28_RS16515 IPR001270 ClpA/B family Eco28_RS16515 IPR003593 AAA+ ATPase domain Eco28_RS16515 IPR003959 ATPase, AAA-type, core Eco28_RS16515 IPR041546 ClpA/ClpB, AAA lid domain Eco28_RS16515 IPR017729 Type VI secretion system, ATPase ClpV1 Eco28_RS16515 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS16515 IPR004176 Clp, N-terminal Eco28_RS16525 IPR006664 Outer membrane protein, bacterial Eco28_RS16525 IPR006665 OmpA-like domain Eco28_RS16525 IPR006690 Outer membrane protein, OmpA-like, conserved site Eco28_RS16525 IPR036737 OmpA-like domain superfamily Eco28_RS16525 IPR008722 Outer membrane porin F, N-terminal Eco28_RS16525 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS16525 IPR028974 TSP type-3 repeat Eco28_RS16535 IPR010263 Type VI secretion protein, VC_A0114 Eco28_RS16540 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Eco28_RS16600 IPR025048 Protein of unknown function DUF3987) Eco28_RS16630 IPR038488 Integrase, DNA-binding domain superfamily Eco28_RS16630 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS16630 IPR025166 Integrase, DNA-binding domain Eco28_RS16630 IPR010998 Integrase/recombinase, N-terminal Eco28_RS16630 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS16630 IPR002104 Integrase, catalytic domain Eco28_RS16645 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Eco28_RS16645 IPR001227 Acyl transferase domain superfamily Eco28_RS16670 IPR003439 ABC transporter-like Eco28_RS16670 IPR017871 ABC transporter, conserved site Eco28_RS16670 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS16670 IPR011924 Lipoprotein releasing system, ATP-binding protein Eco28_RS16670 IPR015854 ABC transporter, lipoprotein release, LolD Eco28_RS16670 IPR003593 AAA+ ATPase domain Eco28_RS16685 IPR016039 Thiolase-like Eco28_RS16685 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 Eco28_RS16685 IPR018201 Beta-ketoacyl synthase, active site Eco28_RS16685 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Eco28_RS16685 IPR014030 Beta-ketoacyl synthase, N-terminal Eco28_RS16685 IPR014031 Beta-ketoacyl synthase, C-terminal Eco28_RS16685 IPR000794 Beta-ketoacyl synthase Eco28_RS16690 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 Eco28_RS16690 IPR006223 Glycine cleavage system T protein Eco28_RS16690 IPR006222 Aminomethyltransferase, folate-binding domain Eco28_RS16690 IPR022903 Glycine cleavage system T protein, bacteria Eco28_RS16690 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain Eco28_RS16690 IPR028896 Aminomethyltransferase-like Eco28_RS16690 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Eco28_RS16700 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ Eco28_RS16700 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Eco28_RS16700 IPR029069 HotDog domain superfamily Eco28_RS16705 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS16705 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS16705 IPR036291 NAD(P)-binding domain superfamily Eco28_RS16705 IPR011283 Acetoacetyl-CoA reductase Eco28_RS16710 IPR002582 Holo-[acyl carrier protein] synthase Eco28_RS16710 IPR037143 4'-phosphopantetheinyl transferase domain superfamily Eco28_RS16710 IPR008278 4'-phosphopantetheinyl transferase domain Eco28_RS16710 IPR004568 Phosphopantetheine-protein transferase domain Eco28_RS16715 IPR013686 Polypeptide-transport-associated, ShlB-type Eco28_RS16715 IPR034746 POTRA domain Eco28_RS16715 IPR035251 ShlB, POTRA domain Eco28_RS16715 IPR027282 Two partner secretion pathway transporter Eco28_RS16715 IPR005565 Haemolysin activator HlyB, C-terminal Eco28_RS16720 IPR010069 Filamentous haemagglutinin, 20-residue x2 repeat Eco28_RS16720 IPR008638 Filamentous haemagglutinin, N-terminal Eco28_RS16720 IPR025157 Hemagglutinin repeat Eco28_RS16720 IPR012334 Pectin lyase fold Eco28_RS16720 IPR011050 Pectin lyase fold/virulence factor Eco28_RS16720 IPR006914 VENN motif-containing domain Eco28_RS16720 IPR024973 ESPR domain Eco28_RS16730 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS16730 IPR008966 Adhesion domain superfamily Eco28_RS16730 IPR039458 FimA-like Eco28_RS16735 IPR001829 Pili assembly chaperone, bacterial Eco28_RS16735 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS16735 IPR018046 Pili assembly chaperone, conserved site Eco28_RS16735 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS16735 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS16735 IPR013783 Immunoglobulin-like fold Eco28_RS16735 IPR008962 PapD-like superfamily Eco28_RS16740 IPR025949 PapC-like, C-terminal domain Eco28_RS16740 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS16740 IPR000015 Outer membrane usher protein Eco28_RS16740 IPR037224 PapC, N-terminal domain superfamily Eco28_RS16740 IPR025885 PapC, N-terminal domain Eco28_RS16740 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS16750 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS16750 IPR018046 Pili assembly chaperone, conserved site Eco28_RS16750 IPR001829 Pili assembly chaperone, bacterial Eco28_RS16750 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS16750 IPR008962 PapD-like superfamily Eco28_RS16750 IPR013783 Immunoglobulin-like fold Eco28_RS16750 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS16755 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS16755 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS16755 IPR036291 NAD(P)-binding domain superfamily Eco28_RS16770 IPR035919 EAL domain superfamily Eco28_RS16770 IPR001633 EAL domain Eco28_RS16770 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Eco28_RS16775 IPR029787 Nucleotide cyclase Eco28_RS16775 IPR033424 Membrane-associated sensor domain Eco28_RS16775 IPR000160 GGDEF domain Eco28_RS16785 IPR023870 Poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA Eco28_RS16785 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS16785 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS16785 IPR019734 Tetratricopeptide repeat Eco28_RS16790 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Eco28_RS16790 IPR002509 NodB homology domain Eco28_RS16790 IPR023854 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB Eco28_RS16790 IPR032772 Poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, C-terminal Eco28_RS16795 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS16795 IPR001173 Glycosyltransferase 2-like Eco28_RS16795 IPR023853 Poly-beta-1,6 N-acetyl-D-glucosamine synthase PgaC/IcaA Eco28_RS16800 IPR023829 Poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD Eco28_RS16805 IPR003714 PhoH-like protein Eco28_RS16805 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS16810 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS16810 IPR006314 Dyp-type peroxidase Eco28_RS16810 IPR006313 Deferrochelatase/peroxidase EfeB Eco28_RS16810 IPR011008 Dimeric alpha-beta barrel Eco28_RS16815 IPR038352 Imelysin-like domain superfamily Eco28_RS16815 IPR034981 EfeO/Algp7, imelysin-like domain Eco28_RS16815 IPR018976 Imelysin-like domain Eco28_RS16815 IPR028096 EfeO-type cupredoxin-like domain Eco28_RS16815 IPR008972 Cupredoxin Eco28_RS16820 IPR005217 Iron permease FTR1-like Eco28_RS16820 IPR004923 Iron permease FTR1/Fip1/EfeU Eco28_RS16820 IPR036259 MFS transporter superfamily Eco28_RS16835 IPR018212 Sodium/solute symporter, conserved site Eco28_RS16835 IPR038377 Sodium/glucose symporter superfamily Eco28_RS16835 IPR011851 Sodium/proline symporter Eco28_RS16835 IPR001734 Sodium/solute symporter Eco28_RS16850 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS16850 IPR015590 Aldehyde dehydrogenase domain Eco28_RS16850 IPR013321 Arc-type ribbon-helix-helix Eco28_RS16850 IPR010985 Ribbon-helix-helix Eco28_RS16850 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 Eco28_RS16850 IPR029041 FAD-linked oxidoreductase-like Eco28_RS16850 IPR041349 Proline utilization A proline dehydrogenase N-terminal domain Eco28_RS16850 IPR024090 Proline dehydrogenase PutA, domain I Eco28_RS16850 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS16850 IPR016160 Aldehyde dehydrogenase, cysteine active site Eco28_RS16850 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS16850 IPR024089 Proline dehydrogenase PutA, domain I/II Eco28_RS16850 IPR024082 Proline dehydrogenase PutA, domain II Eco28_RS16850 IPR002872 Proline dehydrogenase domain Eco28_RS16850 IPR025703 Bifunctional protein PutA Eco28_RS16850 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Eco28_RS16855 IPR013573 Transcription regulator YcdC, C-terminal Eco28_RS16855 IPR019915 Transcription regulator, pyrimidine utilisation, RutR Eco28_RS16855 IPR009057 Homeobox-like domain superfamily Eco28_RS16855 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS16855 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS16860 IPR036661 Luciferase-like domain superfamily Eco28_RS16860 IPR019914 Pyrimidine monooxygenase RutA Eco28_RS16860 IPR011251 Luciferase-like domain Eco28_RS16865 IPR000868 Isochorismatase-like Eco28_RS16865 IPR019916 Isochorismatase, RutB Eco28_RS16865 IPR036380 Isochorismatase-like superfamily Eco28_RS16870 IPR019897 RidA, conserved site Eco28_RS16870 IPR035959 RutC-like superfamily Eco28_RS16870 IPR006175 YjgF/YER057c/UK114 family Eco28_RS16870 IPR019898 Putative aminoacrylate peracid reductase RutC Eco28_RS16875 IPR029058 Alpha/Beta hydrolase fold Eco28_RS16875 IPR000073 Alpha/beta hydrolase fold-1 Eco28_RS16875 IPR019913 Pyrimidine utilisation protein RutD Eco28_RS16880 IPR023936 NADH dehydrogenase/NAD(P)H nitroreductase, putative, RutE Eco28_RS16880 IPR029479 Nitroreductase Eco28_RS16880 IPR000415 Nitroreductase-like Eco28_RS16885 IPR012349 FMN-binding split barrel Eco28_RS16885 IPR019917 FMN reductase (NADH) RutF Eco28_RS16885 IPR002563 Flavin reductase like domain Eco28_RS16890 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS16890 IPR019918 Pyrimidine permease RutG, predicted Eco28_RS16890 IPR006042 Xanthine/uracil permease Eco28_RS16895 IPR019626 Stress-induced protein, KGG, repeat Eco28_RS16905 IPR037513 NAD(P)H dehydrogenase (quinone), prokaryotic Eco28_RS16905 IPR010089 Flavoprotein WrbA-like Eco28_RS16905 IPR029039 Flavoprotein-like superfamily Eco28_RS16905 IPR008254 Flavodoxin/nitric oxide synthase Eco28_RS16905 IPR005025 NADPH-dependent FMN reductase-like Eco28_RS16910 IPR025600 YccJ-like protein Eco28_RS16915 IPR029033 Histidine phosphatase superfamily Eco28_RS16915 IPR000560 Histidine phosphatase superfamily, clade-2 Eco28_RS16915 IPR033379 Histidine acid phosphatase active site Eco28_RS16925 IPR018253 DnaJ domain, conserved site Eco28_RS16925 IPR008971 HSP40/DnaJ peptide-binding Eco28_RS16925 IPR036869 Chaperone J-domain superfamily Eco28_RS16925 IPR023859 DNA-binding protein, curved-DNA Eco28_RS16925 IPR002939 Chaperone DnaJ, C-terminal Eco28_RS16925 IPR001623 DnaJ domain Eco28_RS16930 IPR022835 Chaperone modulatory protein CbpM Eco28_RS16935 IPR020945 DMSO/Nitrate reductase chaperone Eco28_RS16935 IPR036411 TorD-like superfamily Eco28_RS16935 IPR036386 HscB, C-terminal domain superfamily Eco28_RS16935 IPR023069 Chaperone TorD Eco28_RS16940 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS16940 IPR006658 Molybdopterin guanine dinucleotide-containing S/N-oxide reductase Eco28_RS16940 IPR041954 Trimethylamine-N-oxide reductase-like, molybdopterin-binding domain Eco28_RS16940 IPR041460 Molybdopterin oxidoreductase, N-terminal Eco28_RS16940 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS16940 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS16940 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS16940 IPR006656 Molybdopterin oxidoreductase Eco28_RS16940 IPR011887 Trimethylamine-N-oxide reductase TorA Eco28_RS16945 IPR038266 NapC/NirT cytochrome c superfamily Eco28_RS16945 IPR005126 NapC/NirT cytochrome c, N-terminal Eco28_RS16945 IPR036280 Multiheme cytochrome superfamily Eco28_RS16945 IPR011031 Multihaem cytochrome Eco28_RS16945 IPR009154 Membrane-bound tetrahaem cytochrome TorC/YecK Eco28_RS16950 IPR011006 CheY-like superfamily Eco28_RS16950 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS16950 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS16950 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS16950 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS16955 IPR001761 Periplasmic binding protein/LacI sugar binding domain Eco28_RS16955 IPR028082 Periplasmic binding protein-like I Eco28_RS16955 IPR014301 TMAO reductase system, periplasmic protein TorT Eco28_RS16960 IPR003660 HAMP domain Eco28_RS16960 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS16960 IPR011006 CheY-like superfamily Eco28_RS16960 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS16960 IPR005467 Histidine kinase domain Eco28_RS16960 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS16960 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS16960 IPR036641 HPT domain superfamily Eco28_RS16960 IPR037952 Sensor histidine kinase TorS, sensor domain Eco28_RS16960 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain Eco28_RS16960 IPR038188 TorS, sensor domain superfamily Eco28_RS16960 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS16960 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS16965 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS16965 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS16970 IPR012563 Gns Eco28_RS16975 IPR031853 Putative antitoxin YmcE Eco28_RS16985 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS16985 IPR012156 Cold shock, CspA Eco28_RS16985 IPR011129 Cold shock domain Eco28_RS16985 IPR019844 Cold-shock (CSD) domain Eco28_RS16985 IPR002059 Cold-shock protein, DNA-binding Eco28_RS16990 IPR012156 Cold shock, CspA Eco28_RS16990 IPR019844 Cold-shock (CSD) domain Eco28_RS16990 IPR011129 Cold shock domain Eco28_RS16990 IPR002059 Cold-shock protein, DNA-binding Eco28_RS16990 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS17010 IPR023373 YmcC-like superfamily Eco28_RS17010 IPR021308 Group 4 capsule polysaccharide formation lipoprotein GfcB Eco28_RS17015 IPR010425 Domain of unknown function DUF1017 Eco28_RS17020 IPR010344 Exopolysaccharide biosynthesis protein YbjH Eco28_RS17025 IPR003715 Polysaccharide export protein Eco28_RS17025 IPR040716 Outer-membrane lipoprotein Wza, C-terminal domain Eco28_RS17025 IPR019554 Soluble ligand binding domain Eco28_RS17030 IPR023485 Phosphotyrosine protein phosphatase I Eco28_RS17030 IPR017867 Protein-tyrosine phosphatase, low molecular weight Eco28_RS17030 IPR036196 Phosphotyrosine protein phosphatase I superfamily Eco28_RS17035 IPR005702 Exopolysaccharide synthesis protein Eco28_RS17035 IPR032807 Tyrosine kinase, G-rich domain Eco28_RS17035 IPR003856 Polysaccharide chain length determinant N-terminal domain Eco28_RS17035 IPR025669 AAA domain Eco28_RS17035 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17040 IPR033379 Histidine acid phosphatase active site Eco28_RS17040 IPR000560 Histidine phosphatase superfamily, clade-2 Eco28_RS17040 IPR029033 Histidine phosphatase superfamily Eco28_RS17045 IPR012994 Membrane bound YbgT-like Eco28_RS17050 IPR003317 Cytochrome ubiquinol oxidase subunit 2 Eco28_RS17055 IPR002585 Cytochrome ubiquinol oxidase subunit 1 Eco28_RS17060 IPR006894 HupH hydrogenase expression protein, C-terminal Eco28_RS17060 IPR038527 HupH, C-terminal domain superfamily Eco28_RS17065 IPR010893 [NiFe]-hydrogenase maturation factor HyaE Eco28_RS17065 IPR036249 Thioredoxin-like superfamily Eco28_RS17070 IPR004419 Peptidase A31, hydrogenase expression/formation protein Eco28_RS17070 IPR023430 Peptidase HybD-like domain superfamily Eco28_RS17070 IPR000671 Peptidase A31 family Eco28_RS17075 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Eco28_RS17075 IPR016174 Di-haem cytochrome, transmembrane Eco28_RS17075 IPR000516 Nickel-dependent hydrogenase b-type cytochrome subunit Eco28_RS17080 IPR001501 Nickel-dependent hydrogenase, large subunit Eco28_RS17080 IPR029014 [NiFe]-hydrogenase, large subunit Eco28_RS17080 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site Eco28_RS17085 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS17085 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Eco28_RS17085 IPR001821 [NiFe]-hydrogenase, small subunit Eco28_RS17085 IPR037148 [NiFe]-hydrogenase, small subunit, C-terminal domain superfamily Eco28_RS17085 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS17085 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit Eco28_RS17085 IPR027394 Cytochrome-c3 hydrogenase, C-terminal Eco28_RS17095 IPR006214 Bax inhibitor 1-related Eco28_RS17095 IPR006213 Bax inhibitor 1, conserved site Eco28_RS17100 IPR007453 Sulphur transfer protein DsrC/TusE Eco28_RS17100 IPR025526 DsrC-like domain superfamily Eco28_RS17100 IPR042072 DsrC-like protein, C-terminal domain Eco28_RS17105 IPR001792 Acylphosphatase-like domain Eco28_RS17105 IPR017968 Acylphosphatase, conserved site Eco28_RS17105 IPR028627 Acylphosphatase, bacteria Eco28_RS17105 IPR020456 Acylphosphatase Eco28_RS17105 IPR036046 Acylphosphatase-like domain superfamily Eco28_RS17110 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS17110 IPR019614 S-adenosylmethionine-dependent methyltransferase Eco28_RS17110 IPR002478 PUA domain Eco28_RS17110 IPR041532 RlmI, PUA-like domain Eco28_RS17110 IPR015947 PUA-like superfamily Eco28_RS17110 IPR023542 rRNA large subunit methyltransferase I Eco28_RS17110 IPR036974 PUA domain superfamily Eco28_RS17115 IPR011722 Hemimethylated DNA-binding domain Eco28_RS17115 IPR022866 Heat shock protein HspQ Eco28_RS17115 IPR036623 Hemimethylated DNA-binding domain superfamily Eco28_RS17120 IPR003781 CoA-binding Eco28_RS17120 IPR036291 NAD(P)-binding domain superfamily Eco28_RS17125 IPR018635 Uncharacterised protein family UPF0319 Eco28_RS17130 IPR018148 Methylglyoxal synthase, active site Eco28_RS17130 IPR004363 Methylglyoxal synthase Eco28_RS17130 IPR036914 Methylglyoxal synthase-like domain superfamily Eco28_RS17130 IPR011607 Methylglyoxal synthase-like domain Eco28_RS17135 IPR034739 UvrD/AddA helicase, N-terminal Eco28_RS17135 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17135 IPR014016 UvrD-like helicase, ATP-binding domain Eco28_RS17135 IPR022161 DNA helicase IV, N-terminal domain Eco28_RS17135 IPR000212 DNA helicase, UvrD/REP type Eco28_RS17135 IPR014017 UvrD-like DNA helicase, C-terminal Eco28_RS17140 IPR005185 Inner membrane component domain Eco28_RS17140 IPR031308 Uncharacterised conserved protein UCP028777 Eco28_RS17145 IPR032692 Integral membrane protein YccS, N-terminal Eco28_RS17145 IPR010020 Integral membrane protein, YccS/YhfK Eco28_RS17145 IPR010019 Integral membrane protein, YccS Eco28_RS17150 IPR007077 TfoX, C-terminal Eco28_RS17150 IPR007076 TfoX, N-terminal Eco28_RS17150 IPR026256 Transcriptional regulator, TfoX/Sxy-type Eco28_RS17155 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17155 IPR004596 Cell division suppressor protein, SulA Eco28_RS17165 IPR006665 OmpA-like domain Eco28_RS17165 IPR036737 OmpA-like domain superfamily Eco28_RS17165 IPR006664 Outer membrane protein, bacterial Eco28_RS17165 IPR006690 Outer membrane protein, OmpA-like, conserved site Eco28_RS17165 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS17165 IPR000498 Outer membrane protein OmpA-like, transmembrane domain Eco28_RS17165 IPR002368 Outer membrane protein, OmpA Eco28_RS17170 IPR035087 MatP, N-terminal Eco28_RS17170 IPR038339 MatP, N-terminal domain superfamily Eco28_RS17170 IPR035375 MatP, C-terminal ribbon-helix-helix domain Eco28_RS17170 IPR009390 Macrodomain Ter protein, MatP Eco28_RS17170 IPR013321 Arc-type ribbon-helix-helix Eco28_RS17175 IPR041699 Lon protease, AAA domain Eco28_RS17175 IPR027065 Lon protease Eco28_RS17175 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS17175 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS17175 IPR008269 Peptidase S16, Lon proteolytic domain Eco28_RS17180 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ Eco28_RS17180 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA Eco28_RS17180 IPR029069 HotDog domain superfamily Eco28_RS17185 IPR023200 Ribosome modulation factor domain superfamily Eco28_RS17185 IPR007040 Ribosome modulation factor Eco28_RS17190 IPR005586 ABC-type transport auxiliary lipoprotein component Eco28_RS17195 IPR003399 Mce/MlaD Eco28_RS17200 IPR007498 Intermembrane transport protein PqiA-like Eco28_RS17200 IPR005219 Intermembrane transport protein PqiA-like, Enterobacteria-type Eco28_RS17205 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily Eco28_RS17205 IPR003593 AAA+ ATPase domain Eco28_RS17205 IPR003439 ABC transporter-like Eco28_RS17205 IPR032781 ABC-transporter extension domain Eco28_RS17205 IPR017871 ABC transporter, conserved site Eco28_RS17205 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17205 IPR032524 ABC transporter Uup, C-terminal Eco28_RS17210 IPR019614 S-adenosylmethionine-dependent methyltransferase Eco28_RS17210 IPR004114 THUMP domain Eco28_RS17210 IPR017244 Ribosomal RNA large subunit methyltransferase K/L Eco28_RS17210 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS17210 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS17210 IPR000241 Putative RNA methylase domain Eco28_RS17215 IPR011037 Pyruvate kinase-like, insert domain superfamily Eco28_RS17215 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Eco28_RS17215 IPR005302 Molybdenum cofactor sulfurase, C-terminal Eco28_RS17215 IPR012675 Beta-grasp domain superfamily Eco28_RS17215 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS17215 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS17215 IPR005303 MOSC, N-terminal beta barrel Eco28_RS17220 IPR009809 Cell division protein ZapC Eco28_RS17225 IPR005720 Dihydroorotate dehydrogenase domain Eco28_RS17225 IPR013785 Aldolase-type TIM barrel Eco28_RS17225 IPR005719 Dihydroorotate dehydrogenase, class 2 Eco28_RS17225 IPR001295 Dihydroorotate dehydrogenase, conserved site Eco28_RS17225 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 Eco28_RS17230 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS17230 IPR018046 Pili assembly chaperone, conserved site Eco28_RS17230 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS17230 IPR001829 Pili assembly chaperone, bacterial Eco28_RS17230 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS17230 IPR008962 PapD-like superfamily Eco28_RS17230 IPR013783 Immunoglobulin-like fold Eco28_RS17235 IPR008966 Adhesion domain superfamily Eco28_RS17235 IPR000259 Fimbrial-type adhesion domain Eco28_RS17235 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS17240 IPR000259 Fimbrial-type adhesion domain Eco28_RS17240 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS17240 IPR008966 Adhesion domain superfamily Eco28_RS17250 IPR037224 PapC, N-terminal domain superfamily Eco28_RS17250 IPR025885 PapC, N-terminal domain Eco28_RS17250 IPR025949 PapC-like, C-terminal domain Eco28_RS17250 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS17250 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS17250 IPR000015 Outer membrane usher protein Eco28_RS17265 IPR008962 PapD-like superfamily Eco28_RS17265 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS17265 IPR001829 Pili assembly chaperone, bacterial Eco28_RS17265 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS17265 IPR018046 Pili assembly chaperone, conserved site Eco28_RS17265 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS17265 IPR013783 Immunoglobulin-like fold Eco28_RS17270 IPR000259 Fimbrial-type adhesion domain Eco28_RS17270 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS17270 IPR008966 Adhesion domain superfamily Eco28_RS17280 IPR029039 Flavoprotein-like superfamily Eco28_RS17280 IPR005025 NADPH-dependent FMN reductase-like Eco28_RS17280 IPR020048 NADPH-dependent FMN reductase, SsuE Eco28_RS17285 IPR015168 SsuA/THI5-like Eco28_RS17285 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS17285 IPR010067 Aliphatic sulfonates-binding protein Eco28_RS17290 IPR011251 Luciferase-like domain Eco28_RS17290 IPR036661 Luciferase-like domain superfamily Eco28_RS17290 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent Eco28_RS17295 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS17295 IPR035906 MetI-like superfamily Eco28_RS17300 IPR003439 ABC transporter-like Eco28_RS17300 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB Eco28_RS17300 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17300 IPR003593 AAA+ ATPase domain Eco28_RS17300 IPR017871 ABC transporter, conserved site Eco28_RS17305 IPR012779 Peptidase M1, alanyl aminopeptidase Eco28_RS17305 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal Eco28_RS17305 IPR014782 Peptidase M1, membrane alanine aminopeptidase Eco28_RS17305 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase Eco28_RS17305 IPR038438 Alanyl aminopeptidase, Ig-like domain superfamily Eco28_RS17305 IPR042097 Aminopeptidase N-like , N-terminal Eco28_RS17305 IPR037144 Peptidase M1, alanyl aminopeptidase, C-terminal domain superfamily Eco28_RS17305 IPR035414 Peptidase M1, alanyl aminopeptidase, Ig-like fold Eco28_RS17305 IPR027268 Peptidase M4/M1, CTD superfamily Eco28_RS17310 IPR007229 Nicotinate phosphoribosyltransferase family Eco28_RS17310 IPR006406 Nicotinate phosphoribosyltransferase Eco28_RS17310 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain Eco28_RS17310 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase Eco28_RS17310 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal Eco28_RS17315 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Eco28_RS17315 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Eco28_RS17315 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS17315 IPR004522 Asparagine-tRNA ligase Eco28_RS17315 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb Eco28_RS17315 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS17320 IPR001897 Porin, gammaproteobacterial Eco28_RS17320 IPR001702 Porin, Gram-negative type Eco28_RS17320 IPR023614 Porin domain superfamily Eco28_RS17320 IPR033900 Porin domain, Gram-negative type Eco28_RS17320 IPR013793 Porin, Gram-negative type, conserved site Eco28_RS17330 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS17330 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site Eco28_RS17330 IPR000796 Aspartate/other aminotransferase Eco28_RS17330 IPR004839 Aminotransferase, class I/classII Eco28_RS17330 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS17330 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS17335 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Eco28_RS17335 IPR001279 Metallo-beta-lactamase Eco28_RS17340 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Eco28_RS17340 IPR010275 Protein of unknown function DUF882 Eco28_RS17340 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS17350 IPR005490 L,D-transpeptidase catalytic domain Eco28_RS17350 IPR036365 PGBD-like superfamily Eco28_RS17350 IPR038063 L,D-transpeptidase catalytic domain-like Eco28_RS17350 IPR002477 Peptidoglycan binding-like Eco28_RS17355 IPR032520 MukB, hinge domain Eco28_RS17355 IPR007406 MukB, N-terminal domain Eco28_RS17355 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17355 IPR012090 Chromosome partition protein MukB Eco28_RS17360 IPR042037 MukE, C-terminal domain Eco28_RS17360 IPR042038 MukE, N-terminal domain Eco28_RS17360 IPR007385 Prokaryotic chromosome segregation/condensation protein MukE Eco28_RS17365 IPR005582 Chromosome partition protein MukF Eco28_RS17365 IPR038198 MukF, C-terminal domain superfamily Eco28_RS17365 IPR033440 Chromosome partition protein MukF, middle domain Eco28_RS17365 IPR036141 MukF, middle domain superfamily Eco28_RS17365 IPR033439 Chromosome partition protein MukF, winged-helix domain Eco28_RS17365 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS17365 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS17365 IPR033441 Chromosome partition protein MukF, C-terminal domain Eco28_RS17370 IPR025714 Methyltransferase domain Eco28_RS17370 IPR033664 tRNA 5-carboxymethoxyuridine methyltransferase Eco28_RS17370 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS17375 IPR003848 Domain of unknown function DUF218 Eco28_RS17380 IPR002575 Aminoglycoside phosphotransferase Eco28_RS17380 IPR011009 Protein kinase-like domain superfamily Eco28_RS17385 IPR003329 Acylneuraminate cytidylyltransferase Eco28_RS17385 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase Eco28_RS17385 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS17390 IPR005651 Trm112-like Eco28_RS17395 IPR009351 Protein of unknown function DUF1006 Eco28_RS17400 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17400 IPR003758 Tetraacyldisaccharide 4'-kinase Eco28_RS17405 IPR003593 AAA+ ATPase domain Eco28_RS17405 IPR011527 ABC transporter type 1, transmembrane domain Eco28_RS17405 IPR036640 ABC transporter type 1, transmembrane domain superfamily Eco28_RS17405 IPR017871 ABC transporter, conserved site Eco28_RS17405 IPR011917 ABC transporter, lipid A export, MsbA Eco28_RS17405 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17405 IPR039421 Type I protein exporter Eco28_RS17405 IPR003439 ABC transporter-like Eco28_RS17410 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Eco28_RS17410 IPR035681 ComA-like, MBL domain Eco28_RS17410 IPR004477 ComEC/Rec2-related protein Eco28_RS17410 IPR004797 Competence protein ComEC/Rec2 Eco28_RS17410 IPR001279 Metallo-beta-lactamase Eco28_RS17415 IPR005685 Integration host factor, beta subunit Eco28_RS17415 IPR000119 Histone-like DNA-binding protein Eco28_RS17415 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily Eco28_RS17415 IPR020816 Histone-like DNA-binding protein, conserved site Eco28_RS17420 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS17420 IPR000110 Ribosomal protein S1 Eco28_RS17420 IPR022967 RNA-binding domain, S1 Eco28_RS17420 IPR003029 S1 domain Eco28_RS17425 IPR011994 Cytidylate kinase domain Eco28_RS17425 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17425 IPR003136 Cytidylate kinase Eco28_RS17435 IPR001915 Peptidase M48 Eco28_RS17440 IPR001986 Enolpyruvate transferase domain Eco28_RS17440 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site Eco28_RS17440 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Eco28_RS17440 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase Eco28_RS17440 IPR036968 Enolpyruvate transferase domain superfamily Eco28_RS17445 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Eco28_RS17445 IPR000192 Aminotransferase class V domain Eco28_RS17445 IPR022278 Phosphoserine aminotransferase Eco28_RS17445 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS17445 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS17445 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS17450 IPR007353 Protein of unknown function DUF421 Eco28_RS17450 IPR023090 UPF0702, alpha/beta domain superfamily Eco28_RS17455 IPR003776 YcaO-like domain Eco28_RS17455 IPR041080 YcaO cyclodehydratase, C-terminal Eco28_RS17460 IPR000292 Formate/nitrite transporter Eco28_RS17460 IPR023271 Aquaporin-like Eco28_RS17460 IPR023999 Formate transporter FocA, putative Eco28_RS17460 IPR024002 Formate/nitrite transporter, conserved site Eco28_RS17465 IPR001150 Glycine radical domain Eco28_RS17465 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Eco28_RS17465 IPR005949 Formate acetyltransferase Eco28_RS17465 IPR004184 Pyruvate formate lyase domain Eco28_RS17470 IPR034457 Organic radical-activating enzymes Eco28_RS17470 IPR012839 Organic radical enzyme activase Eco28_RS17470 IPR012838 Pyruvate formate-lyase 1 activating enzyme Eco28_RS17470 IPR034465 Pyruvate formate-lyase activase Eco28_RS17470 IPR001989 Radical-activating enzyme, conserved site Eco28_RS17470 IPR007197 Radical SAM Eco28_RS17470 IPR013785 Aldolase-type TIM barrel Eco28_RS17475 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS17475 IPR005119 LysR, substrate-binding Eco28_RS17475 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS17475 IPR000847 Transcription regulator HTH, LysR Eco28_RS17480 IPR002293 Amino acid/polyamine transporter I Eco28_RS17490 IPR002293 Amino acid/polyamine transporter I Eco28_RS17495 IPR011701 Major facilitator superfamily Eco28_RS17495 IPR020846 Major facilitator superfamily domain Eco28_RS17495 IPR036259 MFS transporter superfamily Eco28_RS17495 IPR023745 MSF-type transporter, YcaD Eco28_RS17500 IPR036380 Isochorismatase-like superfamily Eco28_RS17500 IPR000868 Isochorismatase-like Eco28_RS17505 IPR007059 DMSO reductase anchor subunit (DmsC) Eco28_RS17510 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS17510 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS17510 IPR014297 Dimethylsulphoxide reductase, chain B Eco28_RS17515 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site Eco28_RS17515 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS17515 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS17515 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS17515 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS17515 IPR011888 Anaerobic dimethyl sulphoxide reductase, subunit A, DmsA/YnfE Eco28_RS17515 IPR006656 Molybdopterin oxidoreductase Eco28_RS17515 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS17515 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS17520 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm Eco28_RS17520 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily Eco28_RS17520 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Eco28_RS17520 IPR033729 Serine-tRNA ligase catalytic core domain Eco28_RS17520 IPR015866 Serine-tRNA synthetase, type1, N-terminal Eco28_RS17520 IPR002317 Serine-tRNA ligase, type1 Eco28_RS17520 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS17525 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal Eco28_RS17525 IPR003959 ATPase, AAA-type, core Eco28_RS17525 IPR032423 AAA C-terminal domain Eco28_RS17525 IPR003593 AAA+ ATPase domain Eco28_RS17525 IPR021886 MgsA AAA+ ATPase C-terminal Eco28_RS17525 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17530 IPR029046 Lipoprotein localisation LolA/LolB/LppX Eco28_RS17530 IPR004564 Outer membrane lipoprotein carrier protein LolA-like Eco28_RS17530 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria Eco28_RS17535 IPR025199 DNA translocase FtsK, 4TM region Eco28_RS17535 IPR002543 FtsK domain Eco28_RS17535 IPR018541 FtsK gamma domain Eco28_RS17535 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17535 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS17535 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS17535 IPR041027 FtsK alpha domain Eco28_RS17540 IPR011991 ArsR-like helix-turn-helix domain Eco28_RS17540 IPR000485 AsnC-type HTH domain Eco28_RS17540 IPR019888 Transcription regulator AsnC-type Eco28_RS17540 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS17540 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS17540 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Eco28_RS17540 IPR011008 Dimeric alpha-beta barrel Eco28_RS17540 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Eco28_RS17550 IPR023753 FAD/NAD(P)-binding domain Eco28_RS17550 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site Eco28_RS17550 IPR005982 Thioredoxin reductase Eco28_RS17550 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS17555 IPR003593 AAA+ ATPase domain Eco28_RS17555 IPR036640 ABC transporter type 1, transmembrane domain superfamily Eco28_RS17555 IPR011527 ABC transporter type 1, transmembrane domain Eco28_RS17555 IPR017871 ABC transporter, conserved site Eco28_RS17555 IPR039421 Type I protein exporter Eco28_RS17555 IPR003439 ABC transporter-like Eco28_RS17555 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD Eco28_RS17555 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17560 IPR003593 AAA+ ATPase domain Eco28_RS17560 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC Eco28_RS17560 IPR003439 ABC transporter-like Eco28_RS17560 IPR017871 ABC transporter, conserved site Eco28_RS17560 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17560 IPR036640 ABC transporter type 1, transmembrane domain superfamily Eco28_RS17560 IPR011527 ABC transporter type 1, transmembrane domain Eco28_RS17565 IPR042203 Leucyl/phenylalanyl-tRNA-protein transferase, C-terminal Eco28_RS17565 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase Eco28_RS17565 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS17575 IPR022967 RNA-binding domain, S1 Eco28_RS17575 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS17575 IPR006196 RNA-binding domain, S1, IF1 type Eco28_RS17575 IPR004368 Translation initiation factor IF-1 Eco28_RS17600 IPR009610 CbtA toxin of type IV toxin-antitoxin system Eco28_RS17605 IPR009320 Antitoxin CbeA Eco28_RS17605 IPR038025 Antitoxin CbeA superfamily Eco28_RS17615 IPR009329 Protein of unknown function DUF987 Eco28_RS17620 IPR020891 Uncharacterised protein family UPF0758, conserved site Eco28_RS17620 IPR037518 MPN domain Eco28_RS17620 IPR025657 RadC-like JAB domain Eco28_RS17620 IPR001405 Uncharacterised protein family UPF0758 Eco28_RS17625 IPR004914 Antirestriction protein Eco28_RS17625 IPR042297 Antirestriction domain superfamily Eco28_RS17630 IPR026325 Protein of unknown function DUF932 Eco28_RS17640 IPR030930 Adhesin of bacterial autotransporter system Eco28_RS17640 IPR005546 Autotransporter beta-domain Eco28_RS17640 IPR012332 P22 tailspike-like, C-terminal domain superfamily Eco28_RS17640 IPR011050 Pectin lyase fold/virulence factor Eco28_RS17640 IPR036709 Autotransporter beta-domain superfamily Eco28_RS17640 IPR024973 ESPR domain Eco28_RS17645 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17660 IPR003325 TerD domain Eco28_RS17670 IPR003325 TerD domain Eco28_RS17675 IPR003325 TerD domain Eco28_RS17680 IPR022369 Integral membrane protein TerC, riboswitch-linked Eco28_RS17680 IPR005496 Integral membrane protein TerC Eco28_RS17685 IPR007791 Co-chaperone DjlA, N-terminal Eco28_RS17685 IPR029024 TerB-like Eco28_RS17690 IPR003325 TerD domain Eco28_RS17690 IPR017115 Tellurite resistance, TerA Eco28_RS17695 IPR003325 TerD domain Eco28_RS17715 IPR011215 Phosphoribosyl transferase Eco28_RS17715 IPR028157 PELOTA RNA-binding domain Eco28_RS17730 IPR011233 Tellurite/Phi/PacB toxicity protection, TerW Eco28_RS17800 IPR025166 Integrase, DNA-binding domain Eco28_RS17800 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS17800 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS17800 IPR038488 Integrase, DNA-binding domain superfamily Eco28_RS17800 IPR010998 Integrase/recombinase, N-terminal Eco28_RS17800 IPR002104 Integrase, catalytic domain Eco28_RS17805 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA Eco28_RS17805 IPR001270 ClpA/B family Eco28_RS17805 IPR036628 Clp, N-terminal domain superfamily Eco28_RS17805 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17805 IPR019489 Clp ATPase, C-terminal Eco28_RS17805 IPR003959 ATPase, AAA-type, core Eco28_RS17805 IPR003593 AAA+ ATPase domain Eco28_RS17805 IPR018368 ClpA/B, conserved site 1 Eco28_RS17805 IPR004176 Clp, N-terminal Eco28_RS17805 IPR028299 ClpA/B, conserved site 2 Eco28_RS17805 IPR041546 ClpA/ClpB, AAA lid domain Eco28_RS17810 IPR003769 Adaptor protein ClpS, core Eco28_RS17810 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Eco28_RS17810 IPR022935 ATP-dependent Clp protease adaptor protein ClpS Eco28_RS17815 IPR012751 CspD, cold shock Eco28_RS17815 IPR002059 Cold-shock protein, DNA-binding Eco28_RS17815 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS17815 IPR011129 Cold shock domain Eco28_RS17815 IPR012156 Cold shock, CspA Eco28_RS17815 IPR019844 Cold-shock (CSD) domain Eco28_RS17820 IPR017871 ABC transporter, conserved site Eco28_RS17820 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17820 IPR003593 AAA+ ATPase domain Eco28_RS17820 IPR003838 ABC transporter permease protein domain Eco28_RS17820 IPR025857 MacB-like periplasmic core domain Eco28_RS17820 IPR017911 ABC transporter, macrolide export, ATP-binding domain Eco28_RS17820 IPR003439 ABC transporter-like Eco28_RS17825 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS17825 IPR030190 Macrolide export protein MacA Eco28_RS17825 IPR006143 RND efflux pump, membrane fusion protein Eco28_RS17830 IPR007488 Protein of unknown function DUF535 Eco28_RS17835 IPR034139 OLD protein-like, TOPRIM domain Eco28_RS17835 IPR006171 TOPRIM domain Eco28_RS17835 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17835 IPR022602 Protein of unknown function DUF2813 Eco28_RS17840 IPR023271 Aquaporin-like Eco28_RS17840 IPR034294 Aquaporin transporter Eco28_RS17840 IPR023743 Aquaporin Z Eco28_RS17840 IPR000425 Major intrinsic protein Eco28_RS17840 IPR022357 Major intrinsic protein, conserved site Eco28_RS17850 IPR005642 Lysine exporter LysO Eco28_RS17855 IPR011254 Prismane-like superfamily Eco28_RS17855 IPR016099 Prismane-like, alpha/beta-sandwich Eco28_RS17855 IPR016100 Prismane, alpha-bundle Eco28_RS17855 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase Eco28_RS17855 IPR010048 Hydroxylamine reductase Eco28_RS17860 IPR017938 Riboflavin synthase-like beta-barrel Eco28_RS17860 IPR000951 Phthalate dioxygenase reductase Eco28_RS17860 IPR001433 Oxidoreductase FAD/NAD(P)-binding Eco28_RS17860 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Eco28_RS17860 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Eco28_RS17860 IPR012675 Beta-grasp domain superfamily Eco28_RS17860 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS17860 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS17860 IPR017927 FAD-binding domain, ferredoxin reductase-type Eco28_RS17865 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS17865 IPR029061 Thiamin diphosphate-binding fold Eco28_RS17865 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Eco28_RS17865 IPR000399 TPP-binding enzyme, conserved site Eco28_RS17865 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Eco28_RS17865 IPR012000 Thiamine pyrophosphate enzyme, central domain Eco28_RS17870 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS17870 IPR023603 Threonine aldolase Eco28_RS17870 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase Eco28_RS17870 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS17870 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS17875 IPR021295 Protein of unknown function DUF2867 Eco28_RS17875 IPR036291 NAD(P)-binding domain superfamily Eco28_RS17875 IPR016040 NAD(P)-binding domain Eco28_RS17880 IPR036291 NAD(P)-binding domain superfamily Eco28_RS17880 IPR001509 NAD-dependent epimerase/dehydratase Eco28_RS17885 IPR036366 PGBD superfamily Eco28_RS17885 IPR002502 N-acetylmuramoyl-L-alanine amidase domain Eco28_RS17885 IPR036365 PGBD-like superfamily Eco28_RS17885 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily Eco28_RS17890 IPR035439 UPF0145 domain superfamily Eco28_RS17890 IPR002765 Uncharacterised protein family UPF0145 Eco28_RS17910 IPR024289 Domain of unknown function DUF3828 Eco28_RS17915 IPR017871 ABC transporter, conserved site Eco28_RS17915 IPR003593 AAA+ ATPase domain Eco28_RS17915 IPR003439 ABC transporter-like Eco28_RS17915 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type Eco28_RS17915 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17920 IPR001320 Ionotropic glutamate receptor Eco28_RS17920 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter Eco28_RS17920 IPR018313 Solute-binding protein family 3, conserved site Eco28_RS17920 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS17925 IPR035906 MetI-like superfamily Eco28_RS17925 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS17925 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS17930 IPR035906 MetI-like superfamily Eco28_RS17930 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS17930 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS17935 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS17935 IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter Eco28_RS17935 IPR001320 Ionotropic glutamate receptor Eco28_RS17935 IPR018313 Solute-binding protein family 3, conserved site Eco28_RS17950 IPR004703 Phosphotransferase system, sugar-specific permease component Eco28_RS17955 IPR030391 RNA methyltransferase TrmA, conserved site Eco28_RS17955 IPR010280 (Uracil-5)-methyltransferase family Eco28_RS17955 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS17955 IPR030390 RNA methyltransferase TrmA, active site Eco28_RS17955 IPR011825 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC Eco28_RS17960 IPR019703 Protein of unknown function DUF2593 Eco28_RS17965 IPR035906 MetI-like superfamily Eco28_RS17965 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS17970 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS17970 IPR035906 MetI-like superfamily Eco28_RS17975 IPR013611 Transport-associated OB, type 2 Eco28_RS17975 IPR017871 ABC transporter, conserved site Eco28_RS17975 IPR003593 AAA+ ATPase domain Eco28_RS17975 IPR003439 ABC transporter-like Eco28_RS17975 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit Eco28_RS17975 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS17975 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS17980 IPR006059 Bacterial extracellular solute-binding protein Eco28_RS17980 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein Eco28_RS17990 IPR019660 Putative sensory transduction regulator YbjN Eco28_RS17995 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK Eco28_RS17995 IPR013651 ATP-grasp fold, RimK-type Eco28_RS17995 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS17995 IPR011761 ATP-grasp fold Eco28_RS17995 IPR041107 RimK, PreATP-grasp domain Eco28_RS17995 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX Eco28_RS18000 IPR000415 Nitroreductase-like Eco28_RS18000 IPR029479 Nitroreductase Eco28_RS18000 IPR016446 Flavin oxidoreductase Frp family Eco28_RS18005 IPR010815 Protein of unknown function DUF1418 Eco28_RS18010 IPR036249 Thioredoxin-like superfamily Eco28_RS18010 IPR002109 Glutaredoxin Eco28_RS18010 IPR014025 Glutaredoxin subgroup Eco28_RS18010 IPR011902 Glutaredoxin, GrxA Eco28_RS18010 IPR011767 Glutaredoxin active site Eco28_RS18015 IPR020368 Uncharacterised protein family YbjM Eco28_RS18020 IPR023017 Transport protein YbjL, putative Eco28_RS18020 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily Eco28_RS18020 IPR006037 Regulator of K+ conductance, C-terminal Eco28_RS18020 IPR006512 YidE/YbjL duplication Eco28_RS18030 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS18030 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS18030 IPR009057 Homeobox-like domain superfamily Eco28_RS18035 IPR020846 Major facilitator superfamily domain Eco28_RS18035 IPR036259 MFS transporter superfamily Eco28_RS18035 IPR011701 Major facilitator superfamily Eco28_RS18040 IPR000150 Cof family Eco28_RS18040 IPR036412 HAD-like superfamily Eco28_RS18040 IPR006379 HAD-superfamily hydrolase, subfamily IIB Eco28_RS18040 IPR023214 HAD superfamily Eco28_RS18050 IPR011701 Major facilitator superfamily Eco28_RS18050 IPR005829 Sugar transporter, conserved site Eco28_RS18050 IPR036259 MFS transporter superfamily Eco28_RS18050 IPR020846 Major facilitator superfamily domain Eco28_RS18055 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Eco28_RS18055 IPR033879 Undecaprenyl-diphosphatase Eco28_RS18055 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Eco28_RS18060 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS18060 IPR001034 DeoR-type HTH domain Eco28_RS18060 IPR014036 DeoR C-terminal sensor domain Eco28_RS18060 IPR037171 NagB/RpiA transferase-like Eco28_RS18065 IPR015956 Penicillin-binding protein, C-terminal domain superfamily Eco28_RS18065 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A Eco28_RS18065 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Eco28_RS18065 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS18065 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily Eco28_RS18065 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal Eco28_RS18070 IPR036282 Glutathione S-transferase, C-terminal domain superfamily Eco28_RS18070 IPR004045 Glutathione S-transferase, N-terminal Eco28_RS18070 IPR004046 Glutathione S-transferase, C-terminal Eco28_RS18070 IPR036249 Thioredoxin-like superfamily Eco28_RS18070 IPR010987 Glutathione S-transferase, C-terminal-like Eco28_RS18075 IPR011042 Six-bladed beta-propeller, TolB-like Eco28_RS18075 IPR012938 Glucose/Sorbosone dehydrogenase Eco28_RS18075 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase Eco28_RS18080 IPR020359 Biofilm regulator BssR Eco28_RS18085 IPR005840 Ribosomal protein S12 methylthiotransferase RimO Eco28_RS18085 IPR023404 Radical SAM, alpha/beta horseshoe Eco28_RS18085 IPR006638 Elp3/MiaB/NifB Eco28_RS18085 IPR038135 Methylthiotransferase, N-terminal domain superfamily Eco28_RS18085 IPR002792 TRAM domain Eco28_RS18085 IPR041582 RimO, TRAM domain Eco28_RS18085 IPR020612 Methylthiotransferase, conserved site Eco28_RS18085 IPR005839 Methylthiotransferase Eco28_RS18085 IPR007197 Radical SAM Eco28_RS18085 IPR013848 Methylthiotransferase, N-terminal Eco28_RS18100 IPR033422 Gammaproteobacterial periplasmic sensor domain GAPES2 Eco28_RS18100 IPR000160 GGDEF domain Eco28_RS18100 IPR029787 Nucleotide cyclase Eco28_RS18105 IPR001633 EAL domain Eco28_RS18105 IPR035919 EAL domain superfamily Eco28_RS18105 IPR033418 Periplasmic sensor domain, extracellular Eco28_RS18115 IPR001633 EAL domain Eco28_RS18115 IPR035919 EAL domain superfamily Eco28_RS18115 IPR033418 Periplasmic sensor domain, extracellular Eco28_RS18120 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS18120 IPR035906 MetI-like superfamily Eco28_RS18120 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Eco28_RS18125 IPR035906 MetI-like superfamily Eco28_RS18125 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS18130 IPR023765 Solute-binding protein family 5, conserved site Eco28_RS18130 IPR039424 Solute-binding protein family 5 Eco28_RS18130 IPR000914 Solute-binding protein family 5 domain Eco28_RS18130 IPR030678 Peptide/nickel binding protein, MppA-type Eco28_RS18135 IPR003593 AAA+ ATPase domain Eco28_RS18135 IPR017871 ABC transporter, conserved site Eco28_RS18135 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal Eco28_RS18135 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18135 IPR003439 ABC transporter-like Eco28_RS18140 IPR000246 Peptidase T2, asparaginase 2 Eco28_RS18140 IPR029055 Nucleophile aminohydrolases, N-terminal Eco28_RS18145 IPR036425 MoaB/Mog-like domain superfamily Eco28_RS18145 IPR036135 MoeA, N-terminal and linker domain superfamily Eco28_RS18145 IPR001453 MoaB/Mog domain Eco28_RS18145 IPR008284 Molybdenum cofactor biosynthesis, conserved site Eco28_RS18145 IPR038987 Molybdopterin biosynthesis protein MoeA-like Eco28_RS18145 IPR005111 MoeA, C-terminal, domain IV Eco28_RS18145 IPR005110 MoeA, N-terminal and linker domain Eco28_RS18145 IPR036688 MoeA, C-terminal, domain IV superfamily Eco28_RS18150 IPR035985 Ubiquitin-activating enzyme Eco28_RS18150 IPR000594 THIF-type NAD/FAD binding fold Eco28_RS18150 IPR012730 Molybdopterin synthase sulfurylase MoeB Eco28_RS18155 IPR018225 Transaldolase, active site Eco28_RS18155 IPR013785 Aldolase-type TIM barrel Eco28_RS18155 IPR023001 Fructose-6-phosphate aldolase Eco28_RS18155 IPR001585 Transaldolase/Fructose-6-phosphate aldolase Eco28_RS18155 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial Eco28_RS18155 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase Eco28_RS18160 IPR013785 Aldolase-type TIM barrel Eco28_RS18160 IPR034457 Organic radical-activating enzymes Eco28_RS18160 IPR007197 Radical SAM Eco28_RS18160 IPR001989 Radical-activating enzyme, conserved site Eco28_RS18160 IPR034465 Pyruvate formate-lyase activase Eco28_RS18160 IPR012839 Organic radical enzyme activase Eco28_RS18165 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Eco28_RS18165 IPR001150 Glycine radical domain Eco28_RS18165 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family Eco28_RS18165 IPR004184 Pyruvate formate lyase domain Eco28_RS18170 IPR036412 HAD-like superfamily Eco28_RS18170 IPR000150 Cof family Eco28_RS18170 IPR023214 HAD superfamily Eco28_RS18170 IPR006379 HAD-superfamily hydrolase, subfamily IIB Eco28_RS18175 IPR027443 Isopenicillin N synthase-like Eco28_RS18175 IPR010856 Protein of unknown function DUF1479 Eco28_RS18180 IPR003593 AAA+ ATPase domain Eco28_RS18180 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18180 IPR032781 ABC-transporter extension domain Eco28_RS18180 IPR003439 ABC transporter-like Eco28_RS18185 IPR005490 L,D-transpeptidase catalytic domain Eco28_RS18185 IPR038063 L,D-transpeptidase catalytic domain-like Eco28_RS18185 IPR041597 L,D-transpeptidase C-terminal domain Eco28_RS18190 IPR004680 Citrate transporter-like domain Eco28_RS18195 IPR001367 Iron dependent repressor, metal binding and dimerisation domain Eco28_RS18195 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS18195 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS18195 IPR022689 Iron dependent repressor Eco28_RS18195 IPR022687 DTXR-type HTH domain Eco28_RS18195 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily Eco28_RS18205 IPR000917 Sulfatase, N-terminal Eco28_RS18205 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS18205 IPR040423 Phosphoethanolamine transferase Eco28_RS18210 IPR027385 Outer membrane protein beta-barrel domain Eco28_RS18210 IPR000758 Virulence-related outer membrane protein Eco28_RS18210 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS18215 IPR000620 EamA domain Eco28_RS18220 IPR008331 Ferritin/DPS protein domain Eco28_RS18220 IPR023067 DNA protection during starvation protein, gammaproteobacteria Eco28_RS18220 IPR002177 DNA-binding protein Dps Eco28_RS18220 IPR023188 DNA-binding protein Dps, conserved site Eco28_RS18220 IPR012347 Ferritin-like Eco28_RS18220 IPR009078 Ferritin-like superfamily Eco28_RS18235 IPR001320 Ionotropic glutamate receptor Eco28_RS18235 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS18235 IPR018313 Solute-binding protein family 3, conserved site Eco28_RS18240 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS18240 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS18240 IPR035906 MetI-like superfamily Eco28_RS18245 IPR017871 ABC transporter, conserved site Eco28_RS18245 IPR003439 ABC transporter-like Eco28_RS18245 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type Eco28_RS18245 IPR003593 AAA+ ATPase domain Eco28_RS18245 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18250 IPR023408 Mechanosensitive ion channel MscS domain superfamily Eco28_RS18250 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Eco28_RS18250 IPR011066 Mechanosensitive ion channel MscS, C-terminal Eco28_RS18250 IPR006685 Mechanosensitive ion channel MscS Eco28_RS18250 IPR010920 LSM domain superfamily Eco28_RS18255 IPR016909 Ribosomal RNA large subunit methyltransferase F Eco28_RS18255 IPR010286 METTL16/RlmF family Eco28_RS18255 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS18260 IPR010854 Domain of unknown function DUF1471 Eco28_RS18260 IPR025543 Dodecin-like Eco28_RS18260 IPR036275 YdgH-like superfamily Eco28_RS18265 IPR030148 Catecholate siderophore receptor Fiu Eco28_RS18265 IPR012910 TonB-dependent receptor, plug domain Eco28_RS18265 IPR010105 TonB-dependent siderophore receptor Eco28_RS18265 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS18265 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS18265 IPR039423 TonB-dependent receptor-like Eco28_RS18265 IPR010916 TonB box, conserved site Eco28_RS18265 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS18270 IPR005123 Oxoglutarate/iron-dependent dioxygenase Eco28_RS18270 IPR041097 PKHD-type hydroxylase C-terminal domain Eco28_RS18270 IPR023550 PKHD-type hydroxylase Eco28_RS18270 IPR006620 Prolyl 4-hydroxylase, alpha subunit Eco28_RS18275 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Eco28_RS18275 IPR000962 Zinc finger, DksA/TraR C4-type Eco28_RS18275 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Eco28_RS18280 IPR010854 Domain of unknown function DUF1471 Eco28_RS18280 IPR025543 Dodecin-like Eco28_RS18280 IPR036275 YdgH-like superfamily Eco28_RS18285 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily Eco28_RS18285 IPR003767 Malate/L-lactate dehydrogenase-like Eco28_RS18290 IPR017459 Glycosyl transferase family 3, N-terminal domain Eco28_RS18290 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Eco28_RS18290 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Eco28_RS18295 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type Eco28_RS18295 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18295 IPR010614 DEAD2 Eco28_RS18295 IPR011545 DEAD/DEAH box helicase domain Eco28_RS18295 IPR006555 ATP-dependent helicase, C-terminal Eco28_RS18295 IPR001650 Helicase, C-terminal Eco28_RS18295 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS18295 IPR006554 Helicase-like, DEXD box c2 type Eco28_RS18295 IPR039000 ATP-dependent DNA helicase DinG Eco28_RS18320 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS18320 IPR011545 DEAD/DEAH box helicase domain Eco28_RS18320 IPR001650 Helicase, C-terminal Eco28_RS18320 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Eco28_RS18320 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18320 IPR014014 RNA helicase, DEAD-box type, Q motif Eco28_RS18320 IPR028622 ATP-dependent RNA helicase RhlE Eco28_RS18325 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS18325 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS18325 IPR009057 Homeobox-like domain superfamily Eco28_RS18325 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS18325 IPR015292 Transcription regulator YbiH, C-terminal Eco28_RS18330 IPR022936 Uncharacterised protein family UPF0194, membrane protein YbhG Eco28_RS18330 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS18335 IPR017871 ABC transporter, conserved site Eco28_RS18335 IPR003439 ABC transporter-like Eco28_RS18335 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18335 IPR003593 AAA+ ATPase domain Eco28_RS18340 IPR000412 ABC-2 transporter Eco28_RS18345 IPR000412 ABC-2 transporter Eco28_RS18350 IPR021303 Uncharacterised protein family, inner membrane, YbhQ Eco28_RS18355 IPR005135 Endonuclease/exonuclease/phosphatase Eco28_RS18355 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Eco28_RS18360 IPR030872 Cardiolipin synthase B Eco28_RS18360 IPR001736 Phospholipase D/Transphosphatidylase Eco28_RS18360 IPR025202 Phospholipase D-like domain Eco28_RS18365 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Eco28_RS18370 IPR006214 Bax inhibitor 1-related Eco28_RS18375 IPR006214 Bax inhibitor 1-related Eco28_RS18380 IPR003448 Molybdopterin biosynthesis MoaE Eco28_RS18380 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily Eco28_RS18385 IPR012675 Beta-grasp domain superfamily Eco28_RS18385 IPR003749 Sulfur carrier ThiS/MoaD-like Eco28_RS18385 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Eco28_RS18390 IPR023045 Molybdenum cofactor biosynthesis C Eco28_RS18390 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain Eco28_RS18390 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily Eco28_RS18395 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria Eco28_RS18395 IPR008284 Molybdenum cofactor biosynthesis, conserved site Eco28_RS18395 IPR012245 Molybdenum cofactor biosynthesis protein MoaB Eco28_RS18395 IPR001453 MoaB/Mog domain Eco28_RS18395 IPR036425 MoaB/Mog-like domain superfamily Eco28_RS18400 IPR010505 Molybdenum cofactor synthesis C-terminal Eco28_RS18400 IPR013785 Aldolase-type TIM barrel Eco28_RS18400 IPR006638 Elp3/MiaB/NifB Eco28_RS18400 IPR013483 Molybdenum cofactor biosynthesis protein A Eco28_RS18400 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site Eco28_RS18400 IPR007197 Radical SAM Eco28_RS18405 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 Eco28_RS18405 IPR010119 Gluconeogenesis factor Eco28_RS18405 IPR038136 Gluconeogenesis factor superfamily Eco28_RS18410 IPR001650 Helicase, C-terminal Eco28_RS18410 IPR004807 UvrABC system, subunit B Eco28_RS18410 IPR041471 UvrB, interaction domain Eco28_RS18410 IPR001943 UVR domain Eco28_RS18410 IPR006935 Helicase/UvrB, N-terminal Eco28_RS18410 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18410 IPR024759 UvrB, YAD/RRR-motif-containing domain Eco28_RS18410 IPR036876 UVR domain superfamily Eco28_RS18410 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS18415 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18415 IPR004472 Dethiobiotin synthase BioD Eco28_RS18420 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC Eco28_RS18420 IPR013216 Methyltransferase type 11 Eco28_RS18420 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS18425 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type Eco28_RS18425 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site Eco28_RS18425 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS18425 IPR004839 Aminotransferase, class I/classII Eco28_RS18425 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria Eco28_RS18425 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS18425 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS18430 IPR006638 Elp3/MiaB/NifB Eco28_RS18430 IPR010722 Biotin and thiamin synthesis-associated domain Eco28_RS18430 IPR013785 Aldolase-type TIM barrel Eco28_RS18430 IPR007197 Radical SAM Eco28_RS18430 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB Eco28_RS18430 IPR024177 Biotin synthase Eco28_RS18435 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA Eco28_RS18435 IPR005814 Aminotransferase class-III Eco28_RS18435 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS18435 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS18435 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS18440 IPR005247 YbhB/YbcL Eco28_RS18440 IPR008914 Phosphatidylethanolamine-binding protein Eco28_RS18440 IPR036610 PEBP-like superfamily Eco28_RS18450 IPR000070 Pectinesterase, catalytic Eco28_RS18450 IPR033131 Pectinesterase, Asp active site Eco28_RS18450 IPR011050 Pectin lyase fold/virulence factor Eco28_RS18450 IPR012334 Pectin lyase fold Eco28_RS18455 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain Eco28_RS18455 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Eco28_RS18455 IPR015932 Aconitase, domain 2 Eco28_RS18455 IPR036008 Aconitase, iron-sulfur domain Eco28_RS18455 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Eco28_RS18460 IPR001898 Solute carrier family 13 Eco28_RS18460 IPR030676 Citrate carrier CitT-related Eco28_RS18465 IPR007400 PrpF protein Eco28_RS18470 IPR000847 Transcription regulator HTH, LysR Eco28_RS18470 IPR005119 LysR, substrate-binding Eco28_RS18470 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS18470 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS18475 IPR022528 6-phosphogluconolactonase, YbhE-type Eco28_RS18475 IPR015943 WD40/YVTN repeat-like-containing domain superfamily Eco28_RS18475 IPR019405 Lactonase, 7-bladed beta propeller Eco28_RS18475 IPR011045 Nitrous oxide reductase, N-terminal Eco28_RS18480 IPR023214 HAD superfamily Eco28_RS18480 IPR006379 HAD-superfamily hydrolase, subfamily IIB Eco28_RS18480 IPR036412 HAD-like superfamily Eco28_RS18480 IPR000150 Cof family Eco28_RS18485 IPR003439 ABC transporter-like Eco28_RS18485 IPR003593 AAA+ ATPase domain Eco28_RS18485 IPR015852 ABC transporter, molybdenum import, ModC Eco28_RS18485 IPR017871 ABC transporter, conserved site Eco28_RS18485 IPR011868 Molybdate ABC transporter, ATP-binding protein Eco28_RS18485 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS18485 IPR005116 Transport-associated OB, type 1 Eco28_RS18485 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18485 IPR004606 Molybdenum-pterin binding Eco28_RS18490 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS18490 IPR035906 MetI-like superfamily Eco28_RS18490 IPR011867 Molybdate ABC transporter, permease protein Eco28_RS18495 IPR005950 Molybdate ABC transporter, substrate-binding protein Eco28_RS18505 IPR019702 Multidrug efflux pump accessory protein AcrZ Eco28_RS18510 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS18510 IPR016462 Molybdate-dependent transcriptional regulator ModE Eco28_RS18510 IPR003725 Molybdenum-binding protein ModE, N-terminal Eco28_RS18510 IPR004606 Molybdenum-pterin binding Eco28_RS18510 IPR005116 Transport-associated OB, type 1 Eco28_RS18510 IPR000847 Transcription regulator HTH, LysR Eco28_RS18510 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS18510 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS18515 IPR003593 AAA+ ATPase domain Eco28_RS18515 IPR003439 ABC transporter-like Eco28_RS18515 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18520 IPR005886 UDP-glucose 4-epimerase Eco28_RS18520 IPR016040 NAD(P)-binding domain Eco28_RS18520 IPR036291 NAD(P)-binding domain superfamily Eco28_RS18525 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal Eco28_RS18525 IPR019779 Galactose-1-phosphate uridyl transferase, class I His-active site Eco28_RS18525 IPR001937 Galactose-1-phosphate uridyl transferase, class I Eco28_RS18525 IPR036265 HIT-like superfamily Eco28_RS18525 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal Eco28_RS18530 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS18530 IPR013750 GHMP kinase, C-terminal domain Eco28_RS18530 IPR036554 GHMP kinase, C-terminal domain superfamily Eco28_RS18530 IPR006204 GHMP kinase N-terminal domain Eco28_RS18530 IPR006203 GHMP kinase, ATP-binding, conserved site Eco28_RS18530 IPR006206 Mevalonate/galactokinase Eco28_RS18530 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS18530 IPR000705 Galactokinase Eco28_RS18530 IPR022963 Galactokinase, bacterial Eco28_RS18530 IPR019539 Galactokinase galactose-binding domain Eco28_RS18530 IPR019741 Galactokinase, conserved site Eco28_RS18535 IPR014718 Glycoside hydrolase-type carbohydrate-binding Eco28_RS18535 IPR015443 Aldose 1-epimerase Eco28_RS18535 IPR013458 Aldose 1-epimerase, bacterial Eco28_RS18535 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase Eco28_RS18535 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS18535 IPR018052 Aldose 1-epimerase, conserved site Eco28_RS18540 IPR029033 Histidine phosphatase superfamily Eco28_RS18540 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Eco28_RS18540 IPR005952 Phosphoglycerate mutase 1 Eco28_RS18540 IPR013078 Histidine phosphatase superfamily, clade-1 Eco28_RS18545 IPR006219 DHAP synthase, class 1 Eco28_RS18545 IPR013785 Aldolase-type TIM barrel Eco28_RS18545 IPR006218 DAHP synthetase I/KDSA Eco28_RS18555 IPR020363 Uncharacterised protein family YbgS Eco28_RS18560 IPR027469 Cation efflux transmembrane domain superfamily Eco28_RS18560 IPR023500 Zinc transporter ZitB Eco28_RS18560 IPR002524 Cation efflux protein Eco28_RS18560 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Eco28_RS18565 IPR006419 Nicotinamide mononucleotide transporter PnuC Eco28_RS18570 IPR036094 Quinolinate synthetase A superfamily Eco28_RS18570 IPR023513 Quinolinate synthase A, type 1 Eco28_RS18570 IPR003473 Quinolinate synthetase A Eco28_RS18605 IPR032519 YbgF, trimerisation domain Eco28_RS18605 IPR019734 Tetratricopeptide repeat Eco28_RS18605 IPR014162 Cell division coordinator CpoB, C-terminal Eco28_RS18605 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS18605 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS18605 IPR034706 Cell division coordinator CpoB Eco28_RS18610 IPR014169 Peptidoglycan-associated lipoprotein, C-terminal Eco28_RS18610 IPR006665 OmpA-like domain Eco28_RS18610 IPR006690 Outer membrane protein, OmpA-like, conserved site Eco28_RS18610 IPR036737 OmpA-like domain superfamily Eco28_RS18610 IPR006664 Outer membrane protein, bacterial Eco28_RS18610 IPR039001 Peptidoglycan-associated lipoprotein Eco28_RS18615 IPR036752 TolB, N-terminal domain superfamily Eco28_RS18615 IPR011659 WD40-like Beta Propeller Eco28_RS18615 IPR014167 Tol-Pal system protein TolB Eco28_RS18615 IPR007195 TolB, N-terminal Eco28_RS18615 IPR011042 Six-bladed beta-propeller, TolB-like Eco28_RS18620 IPR014161 Tol-Pal system, TolA Eco28_RS18625 IPR014168 Tol-Pal system protein TolR Eco28_RS18625 IPR003400 Biopolymer transport protein ExbD/TolR Eco28_RS18630 IPR002898 MotA/TolQ/ExbB proton channel Eco28_RS18630 IPR014163 Tol-Pal system, TolQ Eco28_RS18635 IPR008272 4-hydroxybenzoyl-CoA thioesterase, active site Eco28_RS18635 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase Eco28_RS18635 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family Eco28_RS18635 IPR006683 Thioesterase domain Eco28_RS18635 IPR029069 HotDog domain superfamily Eco28_RS18640 IPR011846 Cyd operon protein YbgE Eco28_RS18645 IPR011724 Cyd operon protein YbgT Eco28_RS18645 IPR012994 Membrane bound YbgT-like Eco28_RS18650 IPR003317 Cytochrome ubiquinol oxidase subunit 2 Eco28_RS18655 IPR002585 Cytochrome ubiquinol oxidase subunit 1 Eco28_RS18675 IPR006394 Glutamate mutase sigma subunit Eco28_RS18675 IPR036724 Cobalamin-binding domain superfamily Eco28_RS18675 IPR006158 Cobalamin (vitamin B12)-binding domain Eco28_RS18680 IPR006230 Protein MutL Eco28_RS18685 IPR006396 Glutamate mutase epsilon subunit Eco28_RS18685 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic Eco28_RS18685 IPR014714 Glutamate mutase E subunit, C-terminal domain superfamily Eco28_RS18690 IPR029017 Enolase-like, N-terminal Eco28_RS18690 IPR006395 Methylaspartate ammonia-lyase Eco28_RS18690 IPR022662 Methylaspartate ammonia-lyase, C-terminal Eco28_RS18690 IPR022665 Methylaspartate ammonia-lyase, N-terminal Eco28_RS18690 IPR036849 Enolase-like, C-terminal domain superfamily Eco28_RS18705 IPR033380 Glutamate-aspartate symport protein GltP/GltT Eco28_RS18705 IPR001991 Sodium:dicarboxylate symporter Eco28_RS18705 IPR018107 Sodium:dicarboxylate symporter, conserved site Eco28_RS18705 IPR036458 Sodium:dicarboxylate symporter superfamily Eco28_RS18710 IPR011167 Iron-dependent fumarate hydratase Eco28_RS18710 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain Eco28_RS18710 IPR020557 Fumarate lyase, conserved site Eco28_RS18710 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily Eco28_RS18710 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain Eco28_RS18715 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS18715 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain Eco28_RS18715 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR Eco28_RS18720 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS18720 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS18720 IPR005119 LysR, substrate-binding Eco28_RS18720 IPR000847 Transcription regulator HTH, LysR Eco28_RS18735 IPR036291 NAD(P)-binding domain superfamily Eco28_RS18735 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site Eco28_RS18735 IPR016102 Succinyl-CoA synthetase-like Eco28_RS18735 IPR005810 Succinyl-CoA ligase, alpha subunit Eco28_RS18735 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site Eco28_RS18735 IPR003781 CoA-binding Eco28_RS18735 IPR005811 ATP-citrate lyase/succinyl-CoA ligase Eco28_RS18740 IPR011761 ATP-grasp fold Eco28_RS18740 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS18740 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type Eco28_RS18740 IPR005811 ATP-citrate lyase/succinyl-CoA ligase Eco28_RS18740 IPR016102 Succinyl-CoA synthetase-like Eco28_RS18740 IPR005809 Succinate--CoA synthetase, beta subunit Eco28_RS18740 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site Eco28_RS18745 IPR011053 Single hybrid motif Eco28_RS18745 IPR006255 Dihydrolipoamide succinyltransferase Eco28_RS18745 IPR004167 Peripheral subunit-binding domain Eco28_RS18745 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Eco28_RS18745 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain Eco28_RS18745 IPR000089 Biotin/lipoyl attachment Eco28_RS18745 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Eco28_RS18745 IPR036625 E3-binding domain superfamily Eco28_RS18750 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain Eco28_RS18750 IPR005475 Transketolase-like, pyrimidine-binding domain Eco28_RS18750 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal Eco28_RS18750 IPR029061 Thiamin diphosphate-binding fold Eco28_RS18750 IPR001017 Dehydrogenase, E1 component Eco28_RS18750 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily Eco28_RS18750 IPR011603 2-oxoglutarate dehydrogenase E1 component Eco28_RS18755 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS18755 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS18755 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS18755 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS18755 IPR012675 Beta-grasp domain superfamily Eco28_RS18755 IPR009051 Alpha-helical ferredoxin Eco28_RS18755 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein Eco28_RS18755 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal Eco28_RS18760 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Eco28_RS18760 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site Eco28_RS18760 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS18760 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Eco28_RS18760 IPR011281 Succinate dehydrogenase, flavoprotein subunit Eco28_RS18760 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Eco28_RS18760 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily Eco28_RS18760 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Eco28_RS18765 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit Eco28_RS18765 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor Eco28_RS18765 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit Eco28_RS18770 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit Eco28_RS18770 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site Eco28_RS18770 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit Eco28_RS18770 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit Eco28_RS18785 IPR024176 Citrate synthase, bacterial-type Eco28_RS18785 IPR036969 Citrate synthase superfamily Eco28_RS18785 IPR016143 Citrate synthase-like, small alpha subdomain Eco28_RS18785 IPR002020 Citrate synthase Eco28_RS18785 IPR016142 Citrate synthase-like, large alpha subdomain Eco28_RS18785 IPR019810 Citrate synthase active site Eco28_RS18785 IPR010953 Citrate synthase, type I Eco28_RS18790 IPR008966 Adhesion domain superfamily Eco28_RS18790 IPR000259 Fimbrial-type adhesion domain Eco28_RS18790 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS18795 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS18795 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS18795 IPR025949 PapC-like, C-terminal domain Eco28_RS18795 IPR000015 Outer membrane usher protein Eco28_RS18795 IPR025885 PapC, N-terminal domain Eco28_RS18795 IPR037224 PapC, N-terminal domain superfamily Eco28_RS18800 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS18800 IPR018046 Pili assembly chaperone, conserved site Eco28_RS18800 IPR001829 Pili assembly chaperone, bacterial Eco28_RS18800 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS18800 IPR013783 Immunoglobulin-like fold Eco28_RS18800 IPR008962 PapD-like superfamily Eco28_RS18800 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS18805 IPR008966 Adhesion domain superfamily Eco28_RS18805 IPR000259 Fimbrial-type adhesion domain Eco28_RS18805 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS18810 IPR017516 AbrB duplication Eco28_RS18810 IPR007820 AbrB family Eco28_RS18815 IPR023713 Endonuclease VIII Eco28_RS18815 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type Eco28_RS18815 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site Eco28_RS18815 IPR035937 MutM-like, N-terminal Eco28_RS18815 IPR010979 Ribosomal protein S13-like, H2TH Eco28_RS18815 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain Eco28_RS18815 IPR010663 Zinc finger, FPG/IleRS-type Eco28_RS18815 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding Eco28_RS18820 IPR005501 LamB/YcsF/PxpA-like Eco28_RS18820 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Eco28_RS18825 IPR003778 Carboxyltransferase domain, subdomain A and B Eco28_RS18825 IPR029000 Cyclophilin-like domain superfamily Eco28_RS18830 IPR029000 Cyclophilin-like domain superfamily Eco28_RS18830 IPR003833 Carboxyltransferase domain, subdomain C and D Eco28_RS18830 IPR010016 KipI family Eco28_RS18835 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily Eco28_RS18835 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Eco28_RS18840 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site Eco28_RS18840 IPR000109 Proton-dependent oligopeptide transporter family Eco28_RS18840 IPR036259 MFS transporter superfamily Eco28_RS18840 IPR020846 Major facilitator superfamily domain Eco28_RS18840 IPR005279 Dipeptide/tripeptide permease Eco28_RS18840 IPR023777 Amino acid/peptide transporter family, dipeptide permease D Eco28_RS18845 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS18845 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Eco28_RS18845 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain Eco28_RS18845 IPR002081 Cryptochrome/DNA photolyase class 1 Eco28_RS18845 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Eco28_RS18845 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal Eco28_RS18845 IPR006050 DNA photolyase, N-terminal Eco28_RS18850 IPR013560 Domain of unknown function DUF1722 Eco28_RS18855 IPR019663 Uncharacterised protein YbfA Eco28_RS18860 IPR011726 K+ transporting P-type ATPase, F subunit Eco28_RS18865 IPR004623 Potassium-transporting ATPase A chain Eco28_RS18870 IPR023298 P-type ATPase, transmembrane domain superfamily Eco28_RS18870 IPR008250 P-type ATPase, A domain superfamily Eco28_RS18870 IPR023299 P-type ATPase, cytoplasmic domain N Eco28_RS18870 IPR036412 HAD-like superfamily Eco28_RS18870 IPR018303 P-type ATPase, phosphorylation site Eco28_RS18870 IPR006391 P-type ATPase, B chain, subfamily IA Eco28_RS18870 IPR001757 P-type ATPase Eco28_RS18875 IPR003820 Potassium-transporting ATPase C chain Eco28_RS18880 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS18880 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS18880 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal Eco28_RS18880 IPR025201 Sensor protein KdpD, transmembrane domain Eco28_RS18880 IPR038318 KdpD, transmembrane domain superfamily Eco28_RS18880 IPR005467 Histidine kinase domain Eco28_RS18880 IPR003018 GAF domain Eco28_RS18880 IPR029016 GAF-like domain superfamily Eco28_RS18880 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS18880 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS18880 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS18885 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS18885 IPR011006 CheY-like superfamily Eco28_RS18885 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS18885 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS18885 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS18895 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Eco28_RS18895 IPR016066 Alpha-D-phosphohexomutase, conserved site Eco28_RS18895 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Eco28_RS18895 IPR005852 Phosphoglucomutase, alpha-D-glucose specific Eco28_RS18895 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily Eco28_RS18895 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Eco28_RS18895 IPR005843 Alpha-D-phosphohexomutase, C-terminal Eco28_RS18895 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Eco28_RS18900 IPR026577 Replication modulator SeqA, C-terminal DNA-binding domain Eco28_RS18900 IPR010985 Ribbon-helix-helix Eco28_RS18900 IPR005621 Negative modulator of initiation of replication SeqA Eco28_RS18900 IPR013321 Arc-type ribbon-helix-helix Eco28_RS18900 IPR033761 Negative modulator of initiation of replication SeqA, N-terminal Eco28_RS18900 IPR036835 Replication modulator SeqA, C-terminal DNA-binding domain superfamily Eco28_RS18905 IPR000073 Alpha/beta hydrolase fold-1 Eco28_RS18905 IPR029058 Alpha/Beta hydrolase fold Eco28_RS18910 IPR010985 Ribbon-helix-helix Eco28_RS18910 IPR002145 Ribbon-helix-helix protein, CopG Eco28_RS18915 IPR008254 Flavodoxin/nitric oxide synthase Eco28_RS18915 IPR001226 Flavodoxin, conserved site Eco28_RS18915 IPR010086 Flavodoxin, long chain Eco28_RS18915 IPR029039 Flavoprotein-like superfamily Eco28_RS18925 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS18925 IPR002481 Ferric-uptake regulator Eco28_RS18925 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS18930 IPR025727 YbfN-like lipoprotein Eco28_RS18935 IPR023614 Porin domain superfamily Eco28_RS18935 IPR005318 Outer membrane porin, bacterial Eco28_RS18940 IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily Eco28_RS18940 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Eco28_RS18940 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily Eco28_RS18940 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS18940 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain Eco28_RS18940 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Eco28_RS18940 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain Eco28_RS18940 IPR000924 Glutamyl/glutaminyl-tRNA synthetase Eco28_RS18940 IPR022861 Glutamine-tRNA ligase, bacterial Eco28_RS18940 IPR004514 Glutamine-tRNA synthetase Eco28_RS18945 IPR001996 Phosphotransferase system, IIB component, type 1 Eco28_RS18945 IPR011055 Duplicated hybrid motif Eco28_RS18945 IPR036878 Glucose permease domain IIB Eco28_RS18945 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Eco28_RS18945 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component Eco28_RS18945 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 Eco28_RS18945 IPR013013 Phosphotransferase system, EIIC component, type 1 Eco28_RS18945 IPR003352 Phosphotransferase system, EIIC Eco28_RS18950 IPR004547 Glucosamine-6-phosphate isomerase Eco28_RS18950 IPR018321 Glucosamine-6-phosphate isomerase, conserved site Eco28_RS18950 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase Eco28_RS18950 IPR037171 NagB/RpiA transferase-like Eco28_RS18955 IPR006680 Amidohydrolase-related Eco28_RS18955 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS18955 IPR003764 N-acetylglucosamine-6-phosphate deacetylase Eco28_RS18955 IPR032466 Metal-dependent hydrolase Eco28_RS18960 IPR000835 MarR-type HTH domain Eco28_RS18960 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS18960 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS18960 IPR000600 ROK family Eco28_RS18965 IPR006357 HAD-superfamily hydrolase, subfamily IIA Eco28_RS18965 IPR036412 HAD-like superfamily Eco28_RS18965 IPR023214 HAD superfamily Eco28_RS18975 IPR001962 Asparagine synthase Eco28_RS18975 IPR033738 Asparagine synthase, N-terminal domain Eco28_RS18975 IPR017932 Glutamine amidotransferase type 2 domain Eco28_RS18975 IPR029055 Nucleophile aminohydrolases, N-terminal Eco28_RS18975 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS18975 IPR006426 Asparagine synthase, glutamine-hydrolyzing Eco28_RS19020 IPR002938 FAD-binding domain Eco28_RS19020 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS19020 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 Eco28_RS19020 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site Eco28_RS19030 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB Eco28_RS19030 IPR006638 Elp3/MiaB/NifB Eco28_RS19030 IPR007197 Radical SAM Eco28_RS19030 IPR023404 Radical SAM, alpha/beta horseshoe Eco28_RS19030 IPR002792 TRAM domain Eco28_RS19030 IPR005839 Methylthiotransferase Eco28_RS19030 IPR020612 Methylthiotransferase, conserved site Eco28_RS19030 IPR013848 Methylthiotransferase, N-terminal Eco28_RS19030 IPR038135 Methylthiotransferase, N-terminal domain superfamily Eco28_RS19035 IPR003714 PhoH-like protein Eco28_RS19035 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS19040 IPR020549 Endoribonuclease YbeY, conserved site Eco28_RS19040 IPR002036 Endoribonuclease YbeY Eco28_RS19040 IPR023091 Metalloprotease catalytic domain superfamily, predicted Eco28_RS19045 IPR005170 Transporter-associated domain Eco28_RS19045 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS19045 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS19045 IPR000644 CBS domain Eco28_RS19050 IPR004563 Apolipoprotein N-acyltransferase Eco28_RS19050 IPR036526 Carbon-nitrogen hydrolase superfamily Eco28_RS19050 IPR003010 Carbon-nitrogen hydrolase Eco28_RS19055 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS19060 IPR035906 MetI-like superfamily Eco28_RS19060 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS19060 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ Eco28_RS19060 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS19065 IPR035906 MetI-like superfamily Eco28_RS19065 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS19065 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Eco28_RS19065 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM Eco28_RS19070 IPR017871 ABC transporter, conserved site Eco28_RS19070 IPR003439 ABC transporter-like Eco28_RS19070 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type Eco28_RS19070 IPR003593 AAA+ ATPase domain Eco28_RS19070 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS19075 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site Eco28_RS19075 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Eco28_RS19075 IPR023186 Inosine/uridine-preferring nucleoside hydrolase Eco28_RS19075 IPR022975 Pyrimidine-specific ribonucleoside hydrolase RihA Eco28_RS19075 IPR036452 Ribonucleoside hydrolase-like Eco28_RS19080 IPR018181 Heat shock protein 70, conserved site Eco28_RS19080 IPR042030 Chaperone protein HscC, nucleotide-binding domain Eco28_RS19080 IPR013126 Heat shock protein 70 family Eco28_RS19080 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Eco28_RS19085 IPR036869 Chaperone J-domain superfamily Eco28_RS19090 IPR009677 Protein of unknown function DUF1266 Eco28_RS19095 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS19095 IPR006597 Sel1-like repeat Eco28_RS19100 IPR001623 DnaJ domain Eco28_RS19100 IPR036869 Chaperone J-domain superfamily Eco28_RS19105 IPR009677 Protein of unknown function DUF1266 Eco28_RS19110 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS19110 IPR006597 Sel1-like repeat Eco28_RS19115 IPR009912 Zinc-ribbon containing domain Eco28_RS19120 IPR002300 Aminoacyl-tRNA synthetase, class Ia Eco28_RS19120 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS19120 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Eco28_RS19120 IPR025709 Leucyl-tRNA synthetase, editing domain Eco28_RS19120 IPR002302 Leucine-tRNA ligase Eco28_RS19120 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Eco28_RS19120 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Eco28_RS19120 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Eco28_RS19125 IPR007485 LPS-assembly lipoprotein LptE Eco28_RS19130 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal Eco28_RS19130 IPR032780 DNA polymerase III subunit delta, C-terminal Eco28_RS19130 IPR010372 DNA polymerase III delta, N-terminal Eco28_RS19130 IPR005790 DNA polymerase III, delta subunit Eco28_RS19130 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS19135 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase Eco28_RS19135 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS19135 IPR004821 Cytidyltransferase-like domain Eco28_RS19140 IPR013078 Histidine phosphatase superfamily, clade-1 Eco28_RS19140 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Eco28_RS19140 IPR017578 Alpha-ribazole phosphatase, CobC Eco28_RS19140 IPR029033 Histidine phosphatase superfamily Eco28_RS19145 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Eco28_RS19150 IPR029028 Alpha/beta knot methyltransferases Eco28_RS19150 IPR003742 RNA methyltransferase RlmH Eco28_RS19150 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Eco28_RS19155 IPR001460 Penicillin-binding protein, transpeptidase Eco28_RS19155 IPR036138 Penicillin-binding protein, dimerisation domain superfamily Eco28_RS19155 IPR005311 Penicillin-binding protein, dimerisation domain Eco28_RS19155 IPR017790 Penicillin-binding protein 2 Eco28_RS19155 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS19160 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site Eco28_RS19160 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA Eco28_RS19160 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB Eco28_RS19165 IPR036908 RlpA-like domain superfamily Eco28_RS19165 IPR034718 Endolytic peptidoglycan transglycosylase RlpA Eco28_RS19165 IPR009009 RlpA-like protein, double-psi beta-barrel domain Eco28_RS19165 IPR036680 Sporulation-like domain superfamily Eco28_RS19165 IPR012997 Rare lipoprotein A Eco28_RS19165 IPR007730 Sporulation-like domain Eco28_RS19170 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A Eco28_RS19170 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal Eco28_RS19170 IPR015956 Penicillin-binding protein, C-terminal domain superfamily Eco28_RS19170 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS19170 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Eco28_RS19170 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily Eco28_RS19175 IPR027471 YbeD-like domain superfamily Eco28_RS19175 IPR007454 Uncharacterised protein family UPF0250 Eco28_RS19180 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain Eco28_RS19180 IPR000544 Octanoyltransferase Eco28_RS19180 IPR020605 Octanoyltransferase, conserved site Eco28_RS19190 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS19190 IPR005119 LysR, substrate-binding Eco28_RS19190 IPR000847 Transcription regulator HTH, LysR Eco28_RS19190 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS19200 IPR006638 Elp3/MiaB/NifB Eco28_RS19200 IPR031691 Lipoyl synthase, N-terminal Eco28_RS19200 IPR003698 Lipoyl synthase Eco28_RS19200 IPR013785 Aldolase-type TIM barrel Eco28_RS19200 IPR007197 Radical SAM Eco28_RS19205 IPR003369 Sec-independent protein translocase protein TatA/B/E Eco28_RS19205 IPR024905 Sec-independent protein translocase protein TatE Eco28_RS19205 IPR006312 Sec-independent protein translocase protein TatA/E Eco28_RS19210 IPR036526 Carbon-nitrogen hydrolase superfamily Eco28_RS19210 IPR001110 Uncharacterised protein family UPF0012, conserved site Eco28_RS19210 IPR003010 Carbon-nitrogen hydrolase Eco28_RS19215 IPR003691 Putative fluoride ion transporter CrcB Eco28_RS19220 IPR012156 Cold shock, CspA Eco28_RS19220 IPR002059 Cold-shock protein, DNA-binding Eco28_RS19220 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS19220 IPR019844 Cold-shock (CSD) domain Eco28_RS19220 IPR011129 Cold shock domain Eco28_RS19225 IPR009746 Antimicrobial peptide resistance/lipid A acylation PagP Eco28_RS19225 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS19235 IPR018385 C4-dicarboxylate anaerobic carrier-like Eco28_RS19235 IPR004669 C4-dicarboxylate anaerobic carrier Eco28_RS19240 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS19240 IPR024187 Signal transduction response regulator, citrate/malate metabolism Eco28_RS19240 IPR028141 Transcriptional regulator Eco28_RS19240 IPR011006 CheY-like superfamily Eco28_RS19245 IPR035965 PAS domain superfamily Eco28_RS19245 IPR000014 PAS domain Eco28_RS19245 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS19245 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS19245 IPR029151 Periplasmic sensor-like domain superfamily Eco28_RS19245 IPR033463 Single cache domain 3 Eco28_RS19245 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB Eco28_RS19245 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS19245 IPR005467 Histidine kinase domain Eco28_RS19245 IPR039506 SpoOB, alpha-helical domain Eco28_RS19245 IPR013767 PAS fold Eco28_RS19255 IPR000014 PAS domain Eco28_RS19255 IPR035965 PAS domain superfamily Eco28_RS19255 IPR013767 PAS fold Eco28_RS19255 IPR033463 Single cache domain 3 Eco28_RS19255 IPR029151 Periplasmic sensor-like domain superfamily Eco28_RS19255 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS19255 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS19255 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS19255 IPR005467 Histidine kinase domain Eco28_RS19255 IPR039506 SpoOB, alpha-helical domain Eco28_RS19255 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB Eco28_RS19260 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS19260 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS19260 IPR000182 GNAT domain Eco28_RS19260 IPR004821 Cytidyltransferase-like domain Eco28_RS19260 IPR005216 Citrate lyase ligase Eco28_RS19260 IPR013166 Citrate lyase ligase, C-terminal Eco28_RS19265 IPR006495 Citrate lyase acyl carrier protein CitD Eco28_RS19265 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein Eco28_RS19270 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS19270 IPR011206 Citrate lyase beta subunit-like Eco28_RS19270 IPR005000 HpcH/HpaI aldolase/citrate lyase domain Eco28_RS19270 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS19270 IPR006475 Citrate lyase, beta subunit, bacteria Eco28_RS19275 IPR037171 NagB/RpiA transferase-like Eco28_RS19275 IPR006472 Citrate lyase, alpha subunit Eco28_RS19280 IPR005551 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Eco28_RS19285 IPR002736 Triphosphoribosyl-dephospho-CoA protein Eco28_RS19285 IPR017551 Triphosphoribosyl-dephospho-CoA synthase CitG Eco28_RS19290 IPR030676 Citrate carrier CitT-related Eco28_RS19290 IPR001898 Solute carrier family 13 Eco28_RS19295 IPR033130 Ribonuclease T2, His active site 2 Eco28_RS19295 IPR001568 Ribonuclease T2-like Eco28_RS19295 IPR036430 Ribonuclease T2-like superfamily Eco28_RS19295 IPR039378 Ribonuclease T2, prokaryotic Eco28_RS19295 IPR018188 Ribonuclease T2, His active site 1 Eco28_RS19305 IPR028625 Regulator of nucleoside diphosphate kinase Eco28_RS19305 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal Eco28_RS19305 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily Eco28_RS19305 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain Eco28_RS19305 IPR023459 Transcription elongation factor GreA/GreB family Eco28_RS19315 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS19315 IPR036291 NAD(P)-binding domain superfamily Eco28_RS19315 IPR011032 GroES-like superfamily Eco28_RS19315 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS19315 IPR027399 Alcohol dehydrogenase GroES-associated Eco28_RS19315 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS19320 IPR006015 Universal stress protein A family Eco28_RS19320 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS19320 IPR006016 UspA Eco28_RS19325 IPR036249 Thioredoxin-like superfamily Eco28_RS19325 IPR012081 Alkyl hydroperoxide reductase subunit F Eco28_RS19325 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS19325 IPR023753 FAD/NAD(P)-binding domain Eco28_RS19325 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site Eco28_RS19325 IPR002109 Glutaredoxin Eco28_RS19325 IPR012336 Thioredoxin-like fold Eco28_RS19335 IPR036249 Thioredoxin-like superfamily Eco28_RS19335 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant Eco28_RS19335 IPR019479 Peroxiredoxin, C-terminal Eco28_RS19335 IPR013766 Thioredoxin domain Eco28_RS19335 IPR017559 Alkyl hydroperoxide reductase subunit C Eco28_RS19335 IPR024706 Peroxiredoxin, AhpC-type Eco28_RS19340 IPR009094 Disulphide bond isomerase DsbC/G, N-terminal domain superfamily Eco28_RS19340 IPR012336 Thioredoxin-like fold Eco28_RS19340 IPR036249 Thioredoxin-like superfamily Eco28_RS19340 IPR033954 Disulphide bond isomerase, DsbC/G Eco28_RS19350 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS19350 IPR000847 Transcription regulator HTH, LysR Eco28_RS19350 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS19350 IPR005119 LysR, substrate-binding Eco28_RS19355 IPR021845 Protein of unknown function DUF3440 Eco28_RS19355 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS19355 IPR002500 Phosphoadenosine phosphosulphate reductase Eco28_RS19360 IPR003115 ParB/Sulfiredoxin Eco28_RS19360 IPR036086 ParB/Sulfiredoxin superfamily Eco28_RS19365 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS19365 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS19365 IPR004839 Aminotransferase, class I/classII Eco28_RS19365 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS19370 IPR018211 Alcohol dehydrogenase, iron-type, conserved site Eco28_RS19370 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA Eco28_RS19370 IPR016205 Glycerol dehydrogenase Eco28_RS19375 IPR007423 Selenoprotein, putative Eco28_RS19380 IPR003706 CstA, N-terminal domain Eco28_RS19380 IPR025299 CstA, C-terminal domain Eco28_RS19385 IPR029069 HotDog domain superfamily Eco28_RS19385 IPR026576 Proofreading thioesterase EntH Eco28_RS19385 IPR006683 Thioesterase domain Eco28_RS19385 IPR003736 Phenylacetic acid degradation-related domain Eco28_RS19390 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS19390 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS19390 IPR036291 NAD(P)-binding domain superfamily Eco28_RS19390 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase Eco28_RS19395 IPR036736 ACP-like superfamily Eco28_RS19395 IPR009081 Phosphopantetheine binding ACP domain Eco28_RS19395 IPR000868 Isochorismatase-like Eco28_RS19395 IPR016291 Isochorismatase Eco28_RS19395 IPR036380 Isochorismatase-like superfamily Eco28_RS19400 IPR011963 2,3-dihydroxybenzoate-AMP ligase Eco28_RS19400 IPR020845 AMP-binding, conserved site Eco28_RS19400 IPR000873 AMP-dependent synthetase/ligase Eco28_RS19400 IPR025110 AMP-binding enzyme, C-terminal domain Eco28_RS19400 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS19405 IPR004561 Isochorismate synthase Eco28_RS19405 IPR005801 ADC synthase Eco28_RS19405 IPR015890 Chorismate-utilising enzyme, C-terminal Eco28_RS19410 IPR002491 ABC transporter periplasmic binding domain Eco28_RS19415 IPR023722 Enterobactin exporter, EntS Eco28_RS19415 IPR036259 MFS transporter superfamily Eco28_RS19415 IPR020846 Major facilitator superfamily domain Eco28_RS19415 IPR010290 Transmembrane secretion effector Eco28_RS19420 IPR037294 ABC transporter, BtuC-like Eco28_RS19420 IPR000522 ABC transporter, permease protein, BtuC-like Eco28_RS19425 IPR037294 ABC transporter, BtuC-like Eco28_RS19425 IPR000522 ABC transporter, permease protein, BtuC-like Eco28_RS19430 IPR017871 ABC transporter, conserved site Eco28_RS19430 IPR003593 AAA+ ATPase domain Eco28_RS19430 IPR003439 ABC transporter-like Eco28_RS19430 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS19435 IPR003856 Polysaccharide chain length determinant N-terminal domain Eco28_RS19440 IPR001031 Thioesterase Eco28_RS19440 IPR006162 Phosphopantetheine attachment site Eco28_RS19440 IPR010071 Amino acid adenylation domain Eco28_RS19440 IPR001242 Condensation domain Eco28_RS19440 IPR000873 AMP-dependent synthetase/ligase Eco28_RS19440 IPR029058 Alpha/Beta hydrolase fold Eco28_RS19440 IPR020802 Polyketide synthase, thioesterase domain Eco28_RS19440 IPR036736 ACP-like superfamily Eco28_RS19440 IPR020845 AMP-binding, conserved site Eco28_RS19440 IPR020806 Polyketide synthase, phosphopantetheine-binding domain Eco28_RS19440 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Eco28_RS19440 IPR009081 Phosphopantetheine binding ACP domain Eco28_RS19440 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS19445 IPR038020 MbtH-like domain superfamily Eco28_RS19445 IPR005153 MbtH-like domain Eco28_RS19445 IPR037407 MbtH-like protein Eco28_RS19450 IPR029058 Alpha/Beta hydrolase fold Eco28_RS19450 IPR013783 Immunoglobulin-like fold Eco28_RS19450 IPR014756 Immunoglobulin E-set Eco28_RS19450 IPR021764 Enterochelin esterase, N-terminal Eco28_RS19450 IPR000801 Putative esterase Eco28_RS19455 IPR012910 TonB-dependent receptor, plug domain Eco28_RS19455 IPR039426 Vitamin B12 transporter BtuB-like Eco28_RS19455 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS19455 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS19455 IPR010916 TonB box, conserved site Eco28_RS19455 IPR010917 TonB-dependent receptor, conserved site Eco28_RS19455 IPR010105 TonB-dependent siderophore receptor Eco28_RS19455 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS19460 IPR008278 4'-phosphopantetheinyl transferase domain Eco28_RS19460 IPR041354 4'-phosphopantetheinyl transferase, N-terminal domain Eco28_RS19460 IPR037143 4'-phosphopantetheinyl transferase domain superfamily Eco28_RS19460 IPR003542 Enterobactin synthetase-like, component D Eco28_RS19465 IPR018084 Hok/gef cell toxic protein, conserved site Eco28_RS19465 IPR000021 Hok/gef cell toxic protein Eco28_RS19475 IPR018084 Hok/gef cell toxic protein, conserved site Eco28_RS19475 IPR000021 Hok/gef cell toxic protein Eco28_RS19490 IPR011793 Putative glutamate--cysteine ligase YbdK Eco28_RS19490 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Eco28_RS19490 IPR006336 Glutamate--cysteine ligase, GCS2 Eco28_RS19495 IPR010590 Protein of unknown function DUF1158 Eco28_RS19500 IPR007351 Uncharacterised protein YjbR Eco28_RS19500 IPR038056 YjbR-like superfamily Eco28_RS19505 IPR000415 Nitroreductase-like Eco28_RS19505 IPR033878 Nitroreductase NfsB-like Eco28_RS19505 IPR029479 Nitroreductase Eco28_RS19510 IPR010920 LSM domain superfamily Eco28_RS19510 IPR030192 Miniconductance mechanosensitive channel YbdG Eco28_RS19510 IPR011066 Mechanosensitive ion channel MscS, C-terminal Eco28_RS19510 IPR006685 Mechanosensitive ion channel MscS Eco28_RS19515 IPR004840 Amino acid permease, conserved site Eco28_RS19515 IPR004841 Amino acid permease/ SLC12A domain Eco28_RS19520 IPR001036 Acriflavin resistance protein Eco28_RS19520 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Eco28_RS19520 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA Eco28_RS19525 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS19525 IPR006143 RND efflux pump, membrane fusion protein Eco28_RS19530 IPR021647 Copper binding periplasmic protein CusF Eco28_RS19535 IPR003423 Outer membrane efflux protein Eco28_RS19535 IPR010131 RND efflux system, outer membrane lipoprotein, NodT Eco28_RS19545 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS19545 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS19545 IPR011006 CheY-like superfamily Eco28_RS19545 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS19545 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS19545 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS19545 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response Eco28_RS19550 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS19550 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS19550 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS19550 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS19550 IPR005467 Histidine kinase domain Eco28_RS19550 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS19550 IPR003660 HAMP domain Eco28_RS19550 IPR006290 Heavy metal sensor kinase Eco28_RS19555 IPR037026 Vgr protein, OB-fold domain superfamily Eco28_RS19555 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Eco28_RS19555 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Eco28_RS19555 IPR006531 Gp5 N-terminal Eco28_RS19565 IPR022385 Rhs repeat-associated core Eco28_RS19565 IPR006530 YD repeat Eco28_RS19565 IPR008727 PAAR motif Eco28_RS19565 IPR031325 RHS repeat Eco28_RS19575 IPR006530 YD repeat Eco28_RS19575 IPR031325 RHS repeat Eco28_RS19575 IPR022385 Rhs repeat-associated core Eco28_RS19575 IPR008727 PAAR motif Eco28_RS19595 IPR032806 H repeat-associated protein, N-terminal Eco28_RS19595 IPR002559 Transposase, IS4-like Eco28_RS19600 IPR001173 Glycosyltransferase 2-like Eco28_RS19600 IPR037257 General secretory system II, protein E, N-terminal superfamily Eco28_RS19600 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS19600 IPR007831 General secretory system II, protein E, N-terminal Eco28_RS19605 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS19605 IPR019734 Tetratricopeptide repeat Eco28_RS19605 IPR025137 Bacteriophage N4 adsorption protein A, C-terminal Eco28_RS19605 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS19610 IPR027849 Protein of unknown function DUF4434 Eco28_RS19620 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS19620 IPR009057 Homeobox-like domain superfamily Eco28_RS19620 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS19620 IPR018062 HTH domain AraC-type, conserved site Eco28_RS19635 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS19635 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS19635 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS19635 IPR011006 CheY-like superfamily Eco28_RS19635 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS19640 IPR000259 Fimbrial-type adhesion domain Eco28_RS19640 IPR008966 Adhesion domain superfamily Eco28_RS19640 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS19645 IPR000259 Fimbrial-type adhesion domain Eco28_RS19645 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS19645 IPR008966 Adhesion domain superfamily Eco28_RS19650 IPR037224 PapC, N-terminal domain superfamily Eco28_RS19650 IPR000015 Outer membrane usher protein Eco28_RS19650 IPR025885 PapC, N-terminal domain Eco28_RS19650 IPR025949 PapC-like, C-terminal domain Eco28_RS19650 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS19650 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS19655 IPR013783 Immunoglobulin-like fold Eco28_RS19655 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS19655 IPR018046 Pili assembly chaperone, conserved site Eco28_RS19655 IPR001829 Pili assembly chaperone, bacterial Eco28_RS19655 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS19655 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS19655 IPR008962 PapD-like superfamily Eco28_RS19665 IPR008490 Transposase InsH, N-terminal Eco28_RS19665 IPR002559 Transposase, IS4-like Eco28_RS19670 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS19670 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS19670 IPR008962 PapD-like superfamily Eco28_RS19670 IPR001829 Pili assembly chaperone, bacterial Eco28_RS19670 IPR018046 Pili assembly chaperone, conserved site Eco28_RS19670 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS19670 IPR013783 Immunoglobulin-like fold Eco28_RS19675 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS19675 IPR008966 Adhesion domain superfamily Eco28_RS19675 IPR000259 Fimbrial-type adhesion domain Eco28_RS19680 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site Eco28_RS19680 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase Eco28_RS19680 IPR036291 NAD(P)-binding domain superfamily Eco28_RS19680 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Eco28_RS19680 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eco28_RS19685 IPR036986 RNA-binding S4 domain superfamily Eco28_RS19685 IPR002942 RNA-binding S4 domain Eco28_RS19690 IPR007404 LexA-binding, inner membrane-associated putative hydrolase Eco28_RS19695 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Eco28_RS19695 IPR032678 tRNA synthetases class I, catalytic domain Eco28_RS19695 IPR015803 Cysteine-tRNA ligase Eco28_RS19695 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS19695 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR Eco28_RS19695 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase Eco28_RS19700 IPR029000 Cyclophilin-like domain superfamily Eco28_RS19700 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase Eco28_RS19700 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site Eco28_RS19700 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain Eco28_RS19705 IPR010138 UDP-2,3-diacylglucosamine hydrolase Eco28_RS19705 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type Eco28_RS19715 IPR035893 PurE domain superfamily Eco28_RS19715 IPR024694 PurE, prokaryotic type Eco28_RS19715 IPR033747 Class I PurE Eco28_RS19715 IPR000031 PurE domain Eco28_RS19720 IPR011761 ATP-grasp fold Eco28_RS19720 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Eco28_RS19720 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS19720 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS19720 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit Eco28_RS19720 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain Eco28_RS19720 IPR011054 Rudiment single hybrid motif Eco28_RS19725 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS19725 IPR003964 Carbamate kinase Eco28_RS19725 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS19730 IPR021530 Protein of unknown function DUF2877 Eco28_RS19735 IPR024033 Uncharacterised domain superfamily, YlbE Eco28_RS19735 IPR009499 Protein of unknown function DUF1116 Eco28_RS19740 IPR003781 CoA-binding Eco28_RS19740 IPR005811 ATP-citrate lyase/succinyl-CoA ligase Eco28_RS19740 IPR016102 Succinyl-CoA synthetase-like Eco28_RS19745 IPR003767 Malate/L-lactate dehydrogenase-like Eco28_RS19745 IPR017590 Ureidoglycolate dehydrogenase Eco28_RS19745 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily Eco28_RS19750 IPR017591 Allantoate amidohydrolase Eco28_RS19750 IPR010158 Amidase, carbamoylase-type Eco28_RS19750 IPR036264 Bacterial exopeptidase dimerisation domain Eco28_RS19750 IPR002933 Peptidase M20 Eco28_RS19755 IPR011051 RmlC-like cupin domain superfamily Eco28_RS19755 IPR014710 RmlC-like jelly roll fold Eco28_RS19755 IPR008579 Domain of unknown function DUF861, cupin-3 Eco28_RS19755 IPR013096 Cupin 2, conserved barrel Eco28_RS19755 IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein Eco28_RS19760 IPR036129 Glycerate kinase superfamily Eco28_RS19760 IPR018197 Glycerate kinase, restriction-enzyme-like fold Eco28_RS19760 IPR004381 Glycerate kinase Eco28_RS19760 IPR018193 Glycerate kinase, flavodoxin-like fold Eco28_RS19765 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS19770 IPR032466 Metal-dependent hydrolase Eco28_RS19770 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS19770 IPR006680 Amidohydrolase-related Eco28_RS19770 IPR017593 Allantoinase Eco28_RS19775 IPR038271 Purine-cytosine permease superfamily Eco28_RS19775 IPR001248 Purine-cytosine permease Eco28_RS19775 IPR012681 Nucleobase cation symporter-1, NCS1 Eco28_RS19780 IPR006398 2-hydroxy-3-oxopropionate reductase Eco28_RS19780 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site Eco28_RS19780 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS19780 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Eco28_RS19780 IPR015815 3-hydroxyisobutyrate dehydrogenase-related Eco28_RS19780 IPR036291 NAD(P)-binding domain superfamily Eco28_RS19780 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS19780 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain Eco28_RS19785 IPR017643 Hydroxypyruvate isomerase Eco28_RS19785 IPR026040 Hydroxypyruvate isomerase-like Eco28_RS19785 IPR036237 Xylose isomerase-like superfamily Eco28_RS19785 IPR013022 Xylose isomerase-like, TIM barrel domain Eco28_RS19790 IPR012000 Thiamine pyrophosphate enzyme, central domain Eco28_RS19790 IPR029061 Thiamin diphosphate-binding fold Eco28_RS19790 IPR006397 Glyoxylate carboligase Eco28_RS19790 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Eco28_RS19790 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS19790 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Eco28_RS19795 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS19795 IPR029016 GAF-like domain superfamily Eco28_RS19795 IPR014757 Transcription regulator IclR, C-terminal Eco28_RS19795 IPR005471 Transcription regulator IclR, N-terminal Eco28_RS19795 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS19800 IPR024060 Ureidoglycolate lyase domain superfamily Eco28_RS19800 IPR023525 Ureidoglycolate lyase, bacterial Eco28_RS19800 IPR007247 Ureidoglycolate lyase Eco28_RS19800 IPR011051 RmlC-like cupin domain superfamily Eco28_RS19805 IPR005119 LysR, substrate-binding Eco28_RS19805 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS19805 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS19805 IPR000847 Transcription regulator HTH, LysR Eco28_RS19810 IPR001763 Rhodanese-like domain Eco28_RS19810 IPR017582 tRNA 2-selenouridine/geranyl-2-thiouridine synthase Eco28_RS19810 IPR036873 Rhodanese-like domain superfamily Eco28_RS19815 IPR038965 Transposase InsF-like Eco28_RS19815 IPR009057 Homeobox-like domain superfamily Eco28_RS19825 IPR001826 RHS protein Eco28_RS19825 IPR025479 Domain of unknown function DUF4329 Eco28_RS19825 IPR022385 Rhs repeat-associated core Eco28_RS19825 IPR031325 RHS repeat Eco28_RS19825 IPR006530 YD repeat Eco28_RS19830 IPR038766 Membrane component of ABC transporter, predicted Eco28_RS19835 IPR003439 ABC transporter-like Eco28_RS19835 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS19835 IPR003593 AAA+ ATPase domain Eco28_RS19835 IPR017871 ABC transporter, conserved site Eco28_RS19840 IPR036514 SGNH hydrolase superfamily Eco28_RS19840 IPR013830 SGNH hydrolase-type esterase domain Eco28_RS19840 IPR008265 Lipase, GDSL, active site Eco28_RS19845 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS19845 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS19845 IPR036291 NAD(P)-binding domain superfamily Eco28_RS19850 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS19850 IPR036249 Thioredoxin-like superfamily Eco28_RS19850 IPR013766 Thioredoxin domain Eco28_RS19855 IPR005226 UPF0014 family Eco28_RS19860 IPR003439 ABC transporter-like Eco28_RS19860 IPR017871 ABC transporter, conserved site Eco28_RS19860 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS19860 IPR003593 AAA+ ATPase domain Eco28_RS19865 IPR001107 Band 7 domain Eco28_RS19865 IPR036013 Band 7/SPFH domain superfamily Eco28_RS19865 IPR018080 Band 7/stomatin-like, conserved site Eco28_RS19865 IPR032435 Band 7, C-terminal extension Eco28_RS19865 IPR001972 Stomatin family Eco28_RS19870 IPR002810 NfeD-like, C-terminal domain Eco28_RS19900 IPR000551 MerR-type HTH domain Eco28_RS19900 IPR009061 Putative DNA-binding domain superfamily Eco28_RS19900 IPR011789 Cu(I)-responsive transcriptional regulator Eco28_RS19905 IPR010129 Type I secretion membrane fusion protein, HlyD family Eco28_RS19905 IPR006144 Secretion protein HlyD, conserved site Eco28_RS19910 IPR005074 Peptidase C39, bacteriocin processing Eco28_RS19910 IPR005897 Peptidase C39, ABC-type bacteriocin transporter Eco28_RS19910 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS19910 IPR036640 ABC transporter type 1, transmembrane domain superfamily Eco28_RS19910 IPR003439 ABC transporter-like Eco28_RS19910 IPR039421 Type I protein exporter Eco28_RS19910 IPR003593 AAA+ ATPase domain Eco28_RS19910 IPR011527 ABC transporter type 1, transmembrane domain Eco28_RS19910 IPR017871 ABC transporter, conserved site Eco28_RS19925 IPR002293 Amino acid/polyamine transporter I Eco28_RS19930 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS19930 IPR015868 Glutaminase Eco28_RS19935 IPR018303 P-type ATPase, phosphorylation site Eco28_RS19935 IPR001757 P-type ATPase Eco28_RS19935 IPR027256 P-type ATPase, subfamily IB Eco28_RS19935 IPR036163 Heavy metal-associated domain superfamily Eco28_RS19935 IPR017969 Heavy-metal-associated, conserved site Eco28_RS19935 IPR023299 P-type ATPase, cytoplasmic domain N Eco28_RS19935 IPR023214 HAD superfamily Eco28_RS19935 IPR036412 HAD-like superfamily Eco28_RS19935 IPR008250 P-type ATPase, A domain superfamily Eco28_RS19935 IPR006121 Heavy metal-associated domain, HMA Eco28_RS19935 IPR023298 P-type ATPase, transmembrane domain superfamily Eco28_RS19940 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS19940 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS19940 IPR013430 Toxin-antitoxin system, antidote protein, HigA Eco28_RS19945 IPR002816 TraB family Eco28_RS19955 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC Eco28_RS19955 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily Eco28_RS19955 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain Eco28_RS19960 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Eco28_RS19960 IPR006179 5'-Nucleotidase/apyrase Eco28_RS19960 IPR006146 5'-Nucleotidase, conserved site Eco28_RS19960 IPR036907 5'-Nucleotidase, C-terminal domain superfamily Eco28_RS19960 IPR008334 5'-Nucleotidase, C-terminal Eco28_RS19960 IPR029052 Metallo-dependent phosphatase-like Eco28_RS19970 IPR011701 Major facilitator superfamily Eco28_RS19970 IPR020846 Major facilitator superfamily domain Eco28_RS19970 IPR036259 MFS transporter superfamily Eco28_RS19975 IPR036291 NAD(P)-binding domain superfamily Eco28_RS19975 IPR006153 Cation/H+ exchanger Eco28_RS19975 IPR003148 Regulator of K+ conductance, N-terminal Eco28_RS19975 IPR038770 Sodium/solute symporter superfamily Eco28_RS19975 IPR004771 K+/H+ exchanger Eco28_RS19980 IPR029056 Ribokinase-like Eco28_RS19980 IPR011611 Carbohydrate kinase PfkB Eco28_RS19980 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS19985 IPR023508 Acetyl esterase Eco28_RS19985 IPR029058 Alpha/Beta hydrolase fold Eco28_RS19985 IPR013094 Alpha/beta hydrolase fold-3 Eco28_RS19985 IPR002168 Lipase, GDXG, putative histidine active site Eco28_RS19985 IPR033140 Lipase, GDXG, putative serine active site Eco28_RS19990 IPR033659 Ferrochelatase, N-terminal Eco28_RS19990 IPR033644 Ferrochelatase, C-terminal Eco28_RS19990 IPR019772 Ferrochelatase, active site Eco28_RS19990 IPR001015 Ferrochelatase Eco28_RS19995 IPR006259 Adenylate kinase subfamily Eco28_RS19995 IPR000850 Adenylate kinase/UMP-CMP kinase Eco28_RS19995 IPR033690 Adenylate kinase, conserved site Eco28_RS19995 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS19995 IPR007862 Adenylate kinase, active site lid domain Eco28_RS20005 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS20005 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS20005 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS20005 IPR020575 Heat shock protein Hsp90, N-terminal Eco28_RS20005 IPR037196 HSP90, C-terminal domain Eco28_RS20005 IPR001404 Heat shock protein Hsp90 family Eco28_RS20005 IPR019805 Heat shock protein Hsp90, conserved site Eco28_RS20010 IPR023627 Recombination protein RecR Eco28_RS20010 IPR034137 RecR, TOPRIM domain Eco28_RS20010 IPR015967 Recombination protein RecR, conserved site Eco28_RS20010 IPR000093 DNA recombination protein RecR Eco28_RS20010 IPR023628 Recombination protein RecR, C4-type zinc finger Eco28_RS20010 IPR006171 TOPRIM domain Eco28_RS20015 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Eco28_RS20015 IPR004401 Nucleoid-associated protein YbaB/EbfC family Eco28_RS20020 IPR001270 ClpA/B family Eco28_RS20020 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal Eco28_RS20020 IPR012763 DNA polymerase III, subunit gamma/ tau Eco28_RS20020 IPR022754 DNA polymerase III, gamma subunit, domain III Eco28_RS20020 IPR021029 DNA polymerase III, tau subunit, domain V Eco28_RS20020 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20020 IPR038249 DNA polymerase III, tau subunit, C-terminal domain superfamily Eco28_RS20020 IPR022001 DNA polymerase III subunit tau, DnaB-binding domain IV Eco28_RS20020 IPR003593 AAA+ ATPase domain Eco28_RS20025 IPR005764 Adenine phosphoribosyl transferase Eco28_RS20025 IPR000836 Phosphoribosyltransferase domain Eco28_RS20025 IPR029057 Phosphoribosyltransferase-like Eco28_RS20035 IPR007401 Protein of unknown function DUF454 Eco28_RS20040 IPR010890 Primosomal replication PriB/PriC Eco28_RS20040 IPR038338 PriB/PriC superfamily Eco28_RS20045 IPR019630 Protein of unknown function DUF2496, YbaM-related Eco28_RS20050 IPR006686 Mechanosensitive ion channel MscS, conserved site Eco28_RS20050 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Eco28_RS20050 IPR006685 Mechanosensitive ion channel MscS Eco28_RS20050 IPR010920 LSM domain superfamily Eco28_RS20050 IPR011066 Mechanosensitive ion channel MscS, C-terminal Eco28_RS20050 IPR024393 Mechanosensitive ion channel MscS, porin domain Eco28_RS20050 IPR023298 P-type ATPase, transmembrane domain superfamily Eco28_RS20050 IPR025692 Mechanosensitive ion channel inner membrane domain 1 Eco28_RS20050 IPR023408 Mechanosensitive ion channel MscS domain superfamily Eco28_RS20065 IPR008490 Transposase InsH, N-terminal Eco28_RS20065 IPR002559 Transposase, IS4-like Eco28_RS20070 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS20070 IPR013572 Transcription regulator MAATS, C-terminal Eco28_RS20070 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS20070 IPR009057 Homeobox-like domain superfamily Eco28_RS20070 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS20075 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS20075 IPR006143 RND efflux pump, membrane fusion protein Eco28_RS20080 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Eco28_RS20080 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 Eco28_RS20080 IPR001036 Acriflavin resistance protein Eco28_RS20085 IPR019693 Biofilm formation regulator YbaJ Eco28_RS20090 IPR036666 HHA superfamily Eco28_RS20090 IPR007985 Haemolysin expression modulating, HHA Eco28_RS20095 IPR018357 Hexapeptide transferase, conserved site Eco28_RS20095 IPR024688 Maltose/galactoside acetyltransferase Eco28_RS20095 IPR011004 Trimeric LpxA-like superfamily Eco28_RS20095 IPR001451 Hexapeptide repeat Eco28_RS20100 IPR019713 Inner membrane protein YlaC Eco28_RS20105 IPR001633 EAL domain Eco28_RS20105 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Eco28_RS20105 IPR035919 EAL domain superfamily Eco28_RS20110 IPR011008 Dimeric alpha-beta barrel Eco28_RS20110 IPR009874 Protein of unknown function DUF1428 Eco28_RS20120 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS20120 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Eco28_RS20120 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding Eco28_RS20125 IPR039366 YscW/ExsB Eco28_RS20130 IPR029069 HotDog domain superfamily Eco28_RS20130 IPR003703 Acyl-CoA thioesterase Eco28_RS20135 IPR024041 Ammonium transporter AmtB-like domain Eco28_RS20135 IPR029020 Ammonium/urea transporter Eco28_RS20135 IPR018047 Ammonium transporter, conserved site Eco28_RS20135 IPR001905 Ammonium transporter Eco28_RS20140 IPR017918 Nitrogen regulatory protein PII, conserved site Eco28_RS20140 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Eco28_RS20140 IPR002187 Nitrogen regulatory protein PII Eco28_RS20140 IPR002332 Nitrogen regulatory protein P-II, urydylation site Eco28_RS20140 IPR011322 Nitrogen regulatory PII-like, alpha/beta Eco28_RS20145 IPR017871 ABC transporter, conserved site Eco28_RS20145 IPR003593 AAA+ ATPase domain Eco28_RS20145 IPR011527 ABC transporter type 1, transmembrane domain Eco28_RS20145 IPR036640 ABC transporter type 1, transmembrane domain superfamily Eco28_RS20145 IPR039421 Type I protein exporter Eco28_RS20145 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20145 IPR003439 ABC transporter-like Eco28_RS20150 IPR003593 AAA+ ATPase domain Eco28_RS20150 IPR011527 ABC transporter type 1, transmembrane domain Eco28_RS20150 IPR036640 ABC transporter type 1, transmembrane domain superfamily Eco28_RS20150 IPR003439 ABC transporter-like Eco28_RS20150 IPR017871 ABC transporter, conserved site Eco28_RS20150 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20150 IPR039421 Type I protein exporter Eco28_RS20155 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS20155 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS20155 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Eco28_RS20155 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Eco28_RS20155 IPR000485 AsnC-type HTH domain Eco28_RS20155 IPR011008 Dimeric alpha-beta barrel Eco28_RS20155 IPR011991 ArsR-like helix-turn-helix domain Eco28_RS20155 IPR019888 Transcription regulator AsnC-type Eco28_RS20160 IPR023938 HMP-PP phosphatase Eco28_RS20160 IPR006379 HAD-superfamily hydrolase, subfamily IIB Eco28_RS20160 IPR036412 HAD-like superfamily Eco28_RS20160 IPR000150 Cof family Eco28_RS20165 IPR039424 Solute-binding protein family 5 Eco28_RS20165 IPR000914 Solute-binding protein family 5 domain Eco28_RS20165 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain Eco28_RS20170 IPR018317 Queuosine biosynthesis protein QueC Eco28_RS20170 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS20175 IPR029069 HotDog domain superfamily Eco28_RS20175 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family Eco28_RS20180 IPR004509 Competence protein ComEA, helix-hairpin-helix domain Eco28_RS20180 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 Eco28_RS20180 IPR010994 RuvA domain 2-like Eco28_RS20185 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type Eco28_RS20185 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Eco28_RS20185 IPR027304 Trigger factor/SurA domain superfamily Eco28_RS20190 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily Eco28_RS20190 IPR020816 Histone-like DNA-binding protein, conserved site Eco28_RS20190 IPR000119 Histone-like DNA-binding protein Eco28_RS20195 IPR027065 Lon protease Eco28_RS20195 IPR008268 Peptidase S16, active site Eco28_RS20195 IPR003593 AAA+ ATPase domain Eco28_RS20195 IPR003959 ATPase, AAA-type, core Eco28_RS20195 IPR003111 Lon, substrate-binding domain Eco28_RS20195 IPR027543 Lon protease, bacterial Eco28_RS20195 IPR008269 Peptidase S16, Lon proteolytic domain Eco28_RS20195 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS20195 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20195 IPR015947 PUA-like superfamily Eco28_RS20195 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS20195 IPR004815 Lon protease, bacterial/eukaryotic-type Eco28_RS20200 IPR003593 AAA+ ATPase domain Eco28_RS20200 IPR038366 Zinc finger, ClpX C4-type superfamily Eco28_RS20200 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20200 IPR003959 ATPase, AAA-type, core Eco28_RS20200 IPR010603 Zinc finger, ClpX C4-type Eco28_RS20200 IPR004487 Clp protease, ATP-binding subunit ClpX Eco28_RS20200 IPR019489 Clp ATPase, C-terminal Eco28_RS20205 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS20205 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Eco28_RS20205 IPR033135 ClpP, histidine active site Eco28_RS20205 IPR018215 ClpP, Ser active site Eco28_RS20205 IPR001907 ATP-dependent Clp protease proteolytic subunit Eco28_RS20210 IPR027304 Trigger factor/SurA domain superfamily Eco28_RS20210 IPR036611 Trigger factor ribosome-binding domain superfamily Eco28_RS20210 IPR008881 Trigger factor, ribosome-binding, bacterial Eco28_RS20210 IPR037041 Trigger factor, C-terminal domain superfamily Eco28_RS20210 IPR008880 Trigger factor, C-terminal Eco28_RS20210 IPR005215 Trigger factor Eco28_RS20210 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Eco28_RS20220 IPR002634 BolA protein Eco28_RS20220 IPR036065 BolA-like superfamily Eco28_RS20230 IPR005619 Uncharacterised protein family, YajG Eco28_RS20230 IPR012640 Membrane lipoprotein, lipid attachment site Eco28_RS20235 IPR036259 MFS transporter superfamily Eco28_RS20235 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 Eco28_RS20235 IPR011701 Major facilitator superfamily Eco28_RS20235 IPR020846 Major facilitator superfamily domain Eco28_RS20240 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily Eco28_RS20240 IPR002429 Cytochrome c oxidase subunit II-like C-terminal Eco28_RS20240 IPR010514 COX aromatic rich motif Eco28_RS20240 IPR008972 Cupredoxin Eco28_RS20240 IPR006333 Cytochrome o ubiquinol oxidase subunit II Eco28_RS20240 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain Eco28_RS20240 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain Eco28_RS20245 IPR036927 Cytochrome c oxidase-like, subunit I superfamily Eco28_RS20245 IPR014207 Cytochrome o ubiquinol oxidase, subunit I Eco28_RS20245 IPR023616 Cytochrome c oxidase-like, subunit I domain Eco28_RS20245 IPR000883 Cytochrome c oxidase subunit I Eco28_RS20245 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site Eco28_RS20250 IPR024791 Cytochrome c oxidase subunit III Eco28_RS20250 IPR000298 Cytochrome c oxidase subunit III-like Eco28_RS20250 IPR035973 Cytochrome c oxidase subunit III-like superfamily Eco28_RS20250 IPR014206 Cytochrome o ubiquinol oxidase, subunit III Eco28_RS20250 IPR033946 Ubiquinol oxidase subunit III domain Eco28_RS20250 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle Eco28_RS20255 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes Eco28_RS20255 IPR014210 Cytochrome o ubiquinol oxidase subunit IV Eco28_RS20260 IPR006369 Protohaem IX farnesyltransferase Eco28_RS20260 IPR000537 UbiA prenyltransferase family Eco28_RS20260 IPR030470 UbiA prenyltransferase conserved site Eco28_RS20265 IPR020846 Major facilitator superfamily domain Eco28_RS20265 IPR011701 Major facilitator superfamily Eco28_RS20265 IPR036259 MFS transporter superfamily Eco28_RS20270 IPR007551 Protein of unknown function DUF520 Eco28_RS20270 IPR035571 UPF0234-like, C-terminal Eco28_RS20270 IPR035570 UPF0234, N-terminal Eco28_RS20270 IPR036183 YajQ-like superfamily Eco28_RS20275 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS20275 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS20275 IPR003710 Ketopantoate reductase ApbA/PanE Eco28_RS20275 IPR013752 Ketopantoate reductase, C-terminal domain Eco28_RS20275 IPR013332 Ketopantoate reductase, N-terminal domain Eco28_RS20275 IPR036291 NAD(P)-binding domain superfamily Eco28_RS20280 IPR006287 Protein/nucleic acid deglycase DJ-1 Eco28_RS20280 IPR029062 Class I glutamine amidotransferase-like Eco28_RS20280 IPR002818 DJ-1/PfpI Eco28_RS20285 IPR036873 Rhodanese-like domain superfamily Eco28_RS20285 IPR026340 Thiazole biosynthesis domain Eco28_RS20285 IPR004114 THUMP domain Eco28_RS20285 IPR003720 tRNA sulfurtransferase ThiI Eco28_RS20285 IPR020536 Thil, AANH domain Eco28_RS20285 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS20285 IPR001763 Rhodanese-like domain Eco28_RS20295 IPR003761 Exonuclease VII, small subunit Eco28_RS20295 IPR037004 Exonuclease VII, small subunit superfamily Eco28_RS20300 IPR008949 Isoprenoid synthase domain superfamily Eco28_RS20300 IPR000092 Polyprenyl synthetase Eco28_RS20300 IPR033749 Polyprenyl synthetase, conserved site Eco28_RS20305 IPR020826 Transketolase binding site Eco28_RS20305 IPR005475 Transketolase-like, pyrimidine-binding domain Eco28_RS20305 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Eco28_RS20305 IPR033248 Transketolase, C-terminal domain Eco28_RS20305 IPR029061 Thiamin diphosphate-binding fold Eco28_RS20305 IPR005474 Transketolase, N-terminal Eco28_RS20305 IPR005477 Deoxyxylulose-5-phosphate synthase Eco28_RS20310 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS20310 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS20310 IPR020471 Aldo/keto reductase Eco28_RS20320 IPR007686 YutG/PgpA domain Eco28_RS20320 IPR026037 Phosphatidylglycerophosphatase A Eco28_RS20320 IPR036681 PgpA-like superfamily Eco28_RS20325 IPR006283 Thiamine-monophosphate kinase Eco28_RS20325 IPR010918 PurM-like, C-terminal domain Eco28_RS20325 IPR036676 PurM-like, C-terminal domain superfamily Eco28_RS20325 IPR036921 PurM-like, N-terminal domain superfamily Eco28_RS20325 IPR016188 PurM-like, N-terminal domain Eco28_RS20330 IPR011605 NusB antitermination factor Eco28_RS20330 IPR006027 NusB/RsmB/TIM44 Eco28_RS20330 IPR035926 NusB-like superfamily Eco28_RS20335 IPR034964 Lumazine synthase Eco28_RS20335 IPR036467 Lumazine/riboflavin synthase superfamily Eco28_RS20335 IPR002180 Lumazine/riboflavin synthase Eco28_RS20340 IPR002125 Cytidine and deoxycytidylate deaminase domain Eco28_RS20340 IPR011549 Riboflavin-specific deaminase, C-terminal Eco28_RS20340 IPR024072 Dihydrofolate reductase-like domain superfamily Eco28_RS20340 IPR004794 Riboflavin biosynthesis protein RibD Eco28_RS20340 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal Eco28_RS20340 IPR016193 Cytidine deaminase-like Eco28_RS20340 IPR016192 APOBEC/CMP deaminase, zinc-binding Eco28_RS20345 IPR005144 ATP-cone domain Eco28_RS20345 IPR003796 Ribonucleotide reductase regulator NrdR-like Eco28_RS20350 IPR037125 Lipoprotein YajI-like superfamily Eco28_RS20350 IPR021658 Domain of unknown function DUF3251 Eco28_RS20355 IPR036777 Nucleoside-specific channel-forming protein, Tsx-like superfamily Eco28_RS20355 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like Eco28_RS20355 IPR003055 Nucleoside-specific channel-forming protein Tsx Eco28_RS20360 IPR002711 HNH endonuclease Eco28_RS20360 IPR003615 HNH nuclease Eco28_RS20365 IPR005665 Protein-export membrane protein SecF, bacterial Eco28_RS20365 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Eco28_RS20365 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Eco28_RS20365 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Eco28_RS20370 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Eco28_RS20370 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Eco28_RS20370 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Eco28_RS20370 IPR027398 SecD export protein N-terminal TM domain Eco28_RS20370 IPR005791 Protein translocase subunit SecD Eco28_RS20375 IPR003849 Preprotein translocase YajC Eco28_RS20380 IPR002616 tRNA-guanine(15) transglycosylase-like Eco28_RS20380 IPR004803 tRNA-guanine transglycosylase Eco28_RS20380 IPR036511 Queuine tRNA-ribosyltransferase-like Eco28_RS20385 IPR042118 QueA, domain 1 Eco28_RS20385 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA Eco28_RS20385 IPR042119 QueA, domain 2 Eco28_RS20385 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily Eco28_RS20390 IPR007431 Acyl carrier protein phosphodiesterase Eco28_RS20390 IPR023491 Acyl carrier protein phosphodiesterase, gammaproteobacteria Eco28_RS20400 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Eco28_RS20400 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain Eco28_RS20400 IPR014756 Immunoglobulin E-set Eco28_RS20400 IPR017853 Glycoside hydrolase superfamily Eco28_RS20400 IPR013780 Glycosyl hydrolase, all-beta Eco28_RS20400 IPR017069 Maltodextrin glucosidase Eco28_RS20405 IPR004841 Amino acid permease/ SLC12A domain Eco28_RS20405 IPR004840 Amino acid permease, conserved site Eco28_RS20410 IPR004685 Branched-chain amino acid transport system II carrier protein Eco28_RS20415 IPR005467 Histidine kinase domain Eco28_RS20415 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS20415 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS20415 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR Eco28_RS20415 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS20415 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS20415 IPR000014 PAS domain Eco28_RS20415 IPR035965 PAS domain superfamily Eco28_RS20415 IPR013767 PAS fold Eco28_RS20415 IPR021766 Phosphate regulon sensor protein PhoR Eco28_RS20415 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS20420 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS20420 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS20420 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS20420 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS20420 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB Eco28_RS20420 IPR011006 CheY-like superfamily Eco28_RS20425 IPR029052 Metallo-dependent phosphatase-like Eco28_RS20425 IPR026843 Nuclease SbcCD subunit D, C-terminal domain Eco28_RS20425 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain Eco28_RS20425 IPR004593 Nuclease SbcCD subunit D Eco28_RS20425 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Eco28_RS20430 IPR004592 Nuclease SbcC, gammaproteobacteria type Eco28_RS20430 IPR038729 Rad50/SbcC-type AAA domain Eco28_RS20430 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20435 IPR011701 Major facilitator superfamily Eco28_RS20435 IPR020846 Major facilitator superfamily domain Eco28_RS20435 IPR036259 MFS transporter superfamily Eco28_RS20440 IPR000600 ROK family Eco28_RS20445 IPR007476 Putative exonuclease, RdgC Eco28_RS20450 IPR024497 Protein of unknown function DUF2773 Eco28_RS20460 IPR009664 Pyrimidine/purine nucleoside phosphorylase Eco28_RS20460 IPR014710 RmlC-like jelly roll fold Eco28_RS20460 IPR011051 RmlC-like cupin domain superfamily Eco28_RS20465 IPR010843 Uncharacterised protein family AroM Eco28_RS20475 IPR038462 YaiA-like superfamily Eco28_RS20475 IPR032303 YaiA protein Eco28_RS20480 IPR023000 Shikimate kinase, conserved site Eco28_RS20480 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20480 IPR031322 Shikimate kinase/gluconokinase Eco28_RS20480 IPR027544 Shikimate kinase 2 Eco28_RS20480 IPR000623 Shikimate kinase/Threonine synthase-like 1 Eco28_RS20485 IPR003791 Protein of unknown function UPF0178 Eco28_RS20490 IPR000304 Pyrroline-5-carboxylate reductase Eco28_RS20490 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain Eco28_RS20490 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS20490 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Eco28_RS20490 IPR036291 NAD(P)-binding domain superfamily Eco28_RS20495 IPR007894 MASE2 Eco28_RS20495 IPR000160 GGDEF domain Eco28_RS20495 IPR029787 Nucleotide cyclase Eco28_RS20500 IPR011690 Phosphate-starvation-induced PsiF repeat Eco28_RS20505 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS20505 IPR018299 Alkaline phosphatase, active site Eco28_RS20505 IPR001952 Alkaline phosphatase Eco28_RS20510 IPR019732 Sigma-S stabilisation anti-adaptor protein Eco28_RS20520 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS20520 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site Eco28_RS20520 IPR005905 D-alanine--D-alanine ligase Eco28_RS20520 IPR011095 D-alanine--D-alanine ligase, C-terminal Eco28_RS20520 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS20520 IPR011761 ATP-grasp fold Eco28_RS20520 IPR011127 D-alanine--D-alanine ligase, N-terminal domain Eco28_RS20525 IPR020490 Uncharacterised protein family YaiZ Eco28_RS20530 IPR020513 Uncharacterised protein family, inner membrane YaiY Eco28_RS20535 IPR011673 Protein of unknown function DUF1615 Eco28_RS20540 IPR036640 ABC transporter type 1, transmembrane domain superfamily Eco28_RS20540 IPR009248 SbmA/BacA-like Eco28_RS20550 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS20550 IPR001466 Beta-lactamase-related Eco28_RS20555 IPR034719 Inhibitor of hydrogen peroxide resistance Eco28_RS20555 IPR041687 IprA, winged helix-turn-helix domain Eco28_RS20555 IPR018490 Cyclic nucleotide-binding-like Eco28_RS20560 IPR004899 Pertactin, central region Eco28_RS20560 IPR006315 Outer membrane autotransporter barrel Eco28_RS20560 IPR011050 Pectin lyase fold/virulence factor Eco28_RS20560 IPR036709 Autotransporter beta-domain superfamily Eco28_RS20560 IPR005546 Autotransporter beta-domain Eco28_RS20560 IPR003991 Pertactin virulence factor family Eco28_RS20570 IPR005546 Autotransporter beta-domain Eco28_RS20570 IPR006315 Outer membrane autotransporter barrel Eco28_RS20570 IPR036709 Autotransporter beta-domain superfamily Eco28_RS20570 IPR011050 Pectin lyase fold/virulence factor Eco28_RS20570 IPR003991 Pertactin virulence factor family Eco28_RS20575 IPR013785 Aldolase-type TIM barrel Eco28_RS20575 IPR030656 Delta-aminolevulinic acid dehydratase, active site Eco28_RS20575 IPR001731 Delta-aminolevulinic acid dehydratase Eco28_RS20580 IPR003819 TauD/TfdA-like domain Eco28_RS20580 IPR042098 Taurine dioxygenase TauD-like superfamily Eco28_RS20585 IPR035906 MetI-like superfamily Eco28_RS20585 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS20590 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20590 IPR015859 ABC transporter, taurine import, TauD Eco28_RS20590 IPR003593 AAA+ ATPase domain Eco28_RS20590 IPR017871 ABC transporter, conserved site Eco28_RS20590 IPR003439 ABC transporter-like Eco28_RS20595 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Eco28_RS20595 IPR010068 Taurine ABC transporter, substrate-binding protein TauA Eco28_RS20595 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain Eco28_RS20600 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS20600 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS20600 IPR011006 CheY-like superfamily Eco28_RS20600 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS20605 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS20605 IPR005467 Histidine kinase domain Eco28_RS20605 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS20605 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain Eco28_RS20605 IPR007895 MASE1 Eco28_RS20610 IPR011701 Major facilitator superfamily Eco28_RS20610 IPR021159 Glycerate/sugar phosphate transporter, conserved site Eco28_RS20610 IPR020846 Major facilitator superfamily domain Eco28_RS20610 IPR036259 MFS transporter superfamily Eco28_RS20610 IPR000849 Sugar phosphate transporter Eco28_RS20615 IPR026045 Ferric binding protein Eco28_RS20620 IPR035906 MetI-like superfamily Eco28_RS20620 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS20625 IPR003593 AAA+ ATPase domain Eco28_RS20625 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS20625 IPR003439 ABC transporter-like Eco28_RS20625 IPR017871 ABC transporter, conserved site Eco28_RS20625 IPR015853 ABC transporter, ferric cation import, FbpC Eco28_RS20625 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20625 IPR013611 Transport-associated OB, type 2 Eco28_RS20630 IPR003735 Metal-sensitive transcriptional repressor Eco28_RS20630 IPR038390 Metal-sensitive transcriptional repressor superfamily Eco28_RS20635 IPR011032 GroES-like superfamily Eco28_RS20635 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS20635 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS20635 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS20635 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS20635 IPR036291 NAD(P)-binding domain superfamily Eco28_RS20635 IPR014183 Alcohol dehydrogenase class III Eco28_RS20640 IPR014186 S-formylglutathione hydrolase Eco28_RS20640 IPR000801 Putative esterase Eco28_RS20640 IPR029058 Alpha/Beta hydrolase fold Eco28_RS20645 IPR018636 Protein of unknown function DUF2058 Eco28_RS20650 IPR005829 Sugar transporter, conserved site Eco28_RS20650 IPR036259 MFS transporter superfamily Eco28_RS20650 IPR020846 Major facilitator superfamily domain Eco28_RS20650 IPR011701 Major facilitator superfamily Eco28_RS20655 IPR013785 Aldolase-type TIM barrel Eco28_RS20655 IPR000891 Pyruvate carboxyltransferase Eco28_RS20655 IPR035685 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Eco28_RS20655 IPR012425 DmpG-like communication Eco28_RS20655 IPR017629 4-hydroxy-2-oxovalerate aldolase Eco28_RS20660 IPR000534 Semialdehyde dehydrogenase, NAD-binding Eco28_RS20660 IPR036291 NAD(P)-binding domain superfamily Eco28_RS20660 IPR015426 Acetaldehyde dehydrogenase, C-terminal Eco28_RS20660 IPR003361 Acetaldehyde dehydrogenase Eco28_RS20665 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily Eco28_RS20665 IPR011234 Fumarylacetoacetase-like, C-terminal Eco28_RS20665 IPR023793 2-keto-4-pentenoate hydratase Eco28_RS20670 IPR023791 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase Eco28_RS20670 IPR000639 Epoxide hydrolase-like Eco28_RS20670 IPR000073 Alpha/beta hydrolase fold-1 Eco28_RS20670 IPR029058 Alpha/Beta hydrolase fold Eco28_RS20680 IPR023789 2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase Eco28_RS20680 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B Eco28_RS20685 IPR023786 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase Eco28_RS20685 IPR002938 FAD-binding domain Eco28_RS20685 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS20690 IPR014757 Transcription regulator IclR, C-terminal Eco28_RS20690 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS20690 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS20690 IPR029016 GAF-like domain superfamily Eco28_RS20690 IPR005471 Transcription regulator IclR, N-terminal Eco28_RS20695 IPR001279 Metallo-beta-lactamase Eco28_RS20695 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Eco28_RS20705 IPR000843 LacI-type HTH domain Eco28_RS20705 IPR028082 Periplasmic binding protein-like I Eco28_RS20705 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS20715 IPR017853 Glycoside hydrolase superfamily Eco28_RS20715 IPR036156 Beta-Galactosidase/glucuronidase domain superfamily Eco28_RS20715 IPR008979 Galactose-binding-like domain superfamily Eco28_RS20715 IPR014718 Glycoside hydrolase-type carbohydrate-binding Eco28_RS20715 IPR006101 Glycoside hydrolase, family 2 Eco28_RS20715 IPR023232 Glycoside hydrolase, family 2, active site Eco28_RS20715 IPR023933 Glycoside hydrolase, family 2, beta-galactosidase Eco28_RS20715 IPR006103 Glycoside hydrolase family 2, catalytic domain Eco28_RS20715 IPR023230 Glycoside hydrolase, family 2, conserved site Eco28_RS20715 IPR006102 Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich Eco28_RS20715 IPR006104 Glycosyl hydrolases family 2, sugar binding domain Eco28_RS20715 IPR004199 Beta galactosidase small chain/ domain 5 Eco28_RS20715 IPR013783 Immunoglobulin-like fold Eco28_RS20715 IPR032312 Beta-galactosidase, domain 4 Eco28_RS20715 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS20720 IPR000576 LacY/RafB permease family Eco28_RS20720 IPR018457 LacY/RafB permease family, conserved site Eco28_RS20720 IPR036259 MFS transporter superfamily Eco28_RS20720 IPR020846 Major facilitator superfamily domain Eco28_RS20725 IPR001451 Hexapeptide repeat Eco28_RS20725 IPR018357 Hexapeptide transferase, conserved site Eco28_RS20725 IPR039369 Galactoside O-acetyltransferase LacA-like Eco28_RS20725 IPR024688 Maltose/galactoside acetyltransferase Eco28_RS20725 IPR011004 Trimeric LpxA-like superfamily Eco28_RS20730 IPR036259 MFS transporter superfamily Eco28_RS20730 IPR020846 Major facilitator superfamily domain Eco28_RS20730 IPR011701 Major facilitator superfamily Eco28_RS20730 IPR004747 Cyanate transport system protein Eco28_RS20735 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS20735 IPR036581 Cyanate lyase, C-terminal domain superfamily Eco28_RS20735 IPR008076 Cyanate hydratase Eco28_RS20735 IPR003712 Cyanate lyase, C-terminal Eco28_RS20740 IPR036874 Carbonic anhydrase superfamily Eco28_RS20740 IPR001765 Carbonic anhydrase Eco28_RS20740 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site Eco28_RS20745 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS20745 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS20745 IPR000847 Transcription regulator HTH, LysR Eco28_RS20745 IPR005119 LysR, substrate-binding Eco28_RS20745 IPR037403 HTH-type transcriptional regulator CynR, PBP2 domain Eco28_RS20750 IPR032466 Metal-dependent hydrolase Eco28_RS20750 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS20750 IPR013108 Amidohydrolase 3 Eco28_RS20755 IPR038271 Purine-cytosine permease superfamily Eco28_RS20755 IPR001248 Purine-cytosine permease Eco28_RS20755 IPR030191 Cytosine permease Eco28_RS20760 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain Eco28_RS20760 IPR000873 AMP-dependent synthetase/ligase Eco28_RS20760 IPR020845 AMP-binding, conserved site Eco28_RS20760 IPR012694 Propionate--CoA ligase Eco28_RS20760 IPR025110 AMP-binding enzyme, C-terminal domain Eco28_RS20760 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS20765 IPR036148 MmgE/PrpD superfamily Eco28_RS20765 IPR042183 MmgE/PrpD superfamily, domain 1 Eco28_RS20765 IPR042188 MmgE/PrpD superfamily, domain 2 Eco28_RS20765 IPR005656 MmgE/PrpD Eco28_RS20765 IPR012705 2-methylcitrate dehydratase PrpD Eco28_RS20770 IPR011278 2-methylcitrate synthase/citrate synthase type I Eco28_RS20770 IPR016142 Citrate synthase-like, large alpha subdomain Eco28_RS20770 IPR016143 Citrate synthase-like, small alpha subdomain Eco28_RS20770 IPR002020 Citrate synthase Eco28_RS20770 IPR036969 Citrate synthase superfamily Eco28_RS20770 IPR024176 Citrate synthase, bacterial-type Eco28_RS20770 IPR019810 Citrate synthase active site Eco28_RS20775 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS20775 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS20775 IPR012695 2-methylisocitrate lyase Eco28_RS20775 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site Eco28_RS20775 IPR039556 ICL/PEPM domain Eco28_RS20780 IPR003593 AAA+ ATPase domain Eco28_RS20780 IPR009057 Homeobox-like domain superfamily Eco28_RS20780 IPR002197 DNA binding HTH domain, Fis-type Eco28_RS20780 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20780 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR Eco28_RS20780 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal Eco28_RS20780 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS20780 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS20780 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS20785 IPR036275 YdgH-like superfamily Eco28_RS20785 IPR010854 Domain of unknown function DUF1471 Eco28_RS20785 IPR025543 Dodecin-like Eco28_RS20790 IPR004778 Homoserine/Threonine efflux protein Eco28_RS20790 IPR001123 Amino acid exporter protein, LeuE-type Eco28_RS20805 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS20805 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS20805 IPR011032 GroES-like superfamily Eco28_RS20805 IPR036291 NAD(P)-binding domain superfamily Eco28_RS20805 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS20805 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Eco28_RS20805 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS20810 IPR001851 ABC transporter, permease Eco28_RS20815 IPR001851 ABC transporter, permease Eco28_RS20820 IPR003593 AAA+ ATPase domain Eco28_RS20820 IPR003439 ABC transporter-like Eco28_RS20820 IPR017871 ABC transporter, conserved site Eco28_RS20820 IPR015861 ABC transporter, ribose import, RbsA Eco28_RS20820 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS20825 IPR028082 Periplasmic binding protein-like I Eco28_RS20825 IPR025997 Periplasmic binding protein Eco28_RS20835 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS20835 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS20835 IPR013108 Amidohydrolase 3 Eco28_RS20835 IPR032466 Metal-dependent hydrolase Eco28_RS20840 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS20840 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS20840 IPR003964 Carbamate kinase Eco28_RS20850 IPR024033 Uncharacterised domain superfamily, YlbE Eco28_RS20850 IPR009499 Protein of unknown function DUF1116 Eco28_RS20855 IPR016102 Succinyl-CoA synthetase-like Eco28_RS20855 IPR005811 ATP-citrate lyase/succinyl-CoA ligase Eco28_RS20855 IPR003781 CoA-binding Eco28_RS20860 IPR021530 Protein of unknown function DUF2877 Eco28_RS20865 IPR002110 Ankyrin repeat Eco28_RS20865 IPR020683 Ankyrin repeat-containing domain Eco28_RS20865 IPR036770 Ankyrin repeat-containing domain superfamily Eco28_RS20875 IPR009476 Protein of unknown function DUF1097 Eco28_RS20880 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS20880 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS20880 IPR000847 Transcription regulator HTH, LysR Eco28_RS20880 IPR005119 LysR, substrate-binding Eco28_RS20885 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS20885 IPR035919 EAL domain superfamily Eco28_RS20885 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS20885 IPR001633 EAL domain Eco28_RS20885 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS20895 IPR000060 BCCT transporter family Eco28_RS20895 IPR018093 BCCT transporter, conserved site Eco28_RS20905 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS20905 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS20905 IPR009057 Homeobox-like domain superfamily Eco28_RS20905 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS20905 IPR039538 BetI-type transcriptional repressor, C-terminal Eco28_RS20905 IPR017757 Transcriptional repressor BetI Eco28_RS20910 IPR015590 Aldehyde dehydrogenase domain Eco28_RS20910 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS20910 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS20910 IPR029510 Aldehyde dehydrogenase, glutamic acid active site Eco28_RS20910 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS20910 IPR011264 Betaine aldehyde dehydrogenase Eco28_RS20910 IPR016160 Aldehyde dehydrogenase, cysteine active site Eco28_RS20915 IPR012132 Glucose-methanol-choline oxidoreductase Eco28_RS20915 IPR027424 Glucose Oxidase, domain 2 Eco28_RS20915 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS20915 IPR011533 Oxygen-dependent choline dehydrogenase Eco28_RS20915 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal Eco28_RS20915 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal Eco28_RS20935 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS20935 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS20935 IPR001633 EAL domain Eco28_RS20935 IPR035919 EAL domain superfamily Eco28_RS20935 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS20945 IPR036709 Autotransporter beta-domain superfamily Eco28_RS20945 IPR006315 Outer membrane autotransporter barrel Eco28_RS20945 IPR011050 Pectin lyase fold/virulence factor Eco28_RS20945 IPR004899 Pertactin, central region Eco28_RS20945 IPR005546 Autotransporter beta-domain Eco28_RS20945 IPR003991 Pertactin virulence factor family Eco28_RS20965 IPR003741 LUD domain Eco28_RS20965 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily Eco28_RS20965 IPR037171 NagB/RpiA transferase-like Eco28_RS20970 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily Eco28_RS20970 IPR009051 Alpha-helical ferredoxin Eco28_RS20970 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS20970 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS20970 IPR024569 4Fe-4S binding protein, C-terminal Eco28_RS20970 IPR037171 NagB/RpiA transferase-like Eco28_RS20970 IPR003741 LUD domain Eco28_RS20970 IPR004452 4Fe-4S binding protein Eco28_RS20975 IPR004017 Cysteine-rich domain Eco28_RS20980 IPR032783 AraC-type transcription regulator, ligand-binding domain Eco28_RS20980 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS20980 IPR011051 RmlC-like cupin domain superfamily Eco28_RS20980 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS20980 IPR009057 Homeobox-like domain superfamily Eco28_RS20985 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS20985 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Eco28_RS20985 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Eco28_RS20985 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Eco28_RS20985 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site Eco28_RS20985 IPR023753 FAD/NAD(P)-binding domain Eco28_RS20990 IPR010854 Domain of unknown function DUF1471 Eco28_RS20990 IPR036275 YdgH-like superfamily Eco28_RS20990 IPR025543 Dodecin-like Eco28_RS20995 IPR016865 Inner membrane protein RclC Eco28_RS20995 IPR007339 Inner membrane protein RclC-like Eco28_RS21005 IPR009057 Homeobox-like domain superfamily Eco28_RS21005 IPR011256 Regulatory factor, effector binding domain superfamily Eco28_RS21005 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS21005 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS21010 IPR003535 Intimin/invasin bacterial adhesion mediator protein Eco28_RS21010 IPR038177 Inverse autotransporter, beta-domain superfamily Eco28_RS21010 IPR024519 Inverse autotransporter, beta-domain Eco28_RS21015 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS21015 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS21015 IPR018170 Aldo/keto reductase, conserved site Eco28_RS21015 IPR020471 Aldo/keto reductase Eco28_RS21020 IPR020471 Aldo/keto reductase Eco28_RS21020 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS21020 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS21025 IPR005119 LysR, substrate-binding Eco28_RS21025 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS21025 IPR000847 Transcription regulator HTH, LysR Eco28_RS21025 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS21030 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS21030 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS21030 IPR005119 LysR, substrate-binding Eco28_RS21030 IPR000847 Transcription regulator HTH, LysR Eco28_RS21035 IPR029058 Alpha/Beta hydrolase fold Eco28_RS21035 IPR022742 Serine aminopeptidase, S33 Eco28_RS21040 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal Eco28_RS21040 IPR013785 Aldolase-type TIM barrel Eco28_RS21055 IPR034704 L28p-like Eco28_RS21055 IPR042105 Ribosomal protein L31 superfamily Eco28_RS21055 IPR027493 Ribosomal protein L31 type B Eco28_RS21055 IPR002150 Ribosomal protein L31 Eco28_RS21060 IPR000473 Ribosomal protein L36 Eco28_RS21060 IPR035977 Ribosomal protein L36 superfamily Eco28_RS21075 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS21075 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS21075 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS21080 IPR016514 Fimbrial protein EcpA Eco28_RS21080 IPR038478 Fimbrillin subunit EcpA superfamily Eco28_RS21085 IPR040695 EcpB, C-terminal Eco28_RS21085 IPR013783 Immunoglobulin-like fold Eco28_RS21085 IPR008962 PapD-like superfamily Eco28_RS21090 IPR031917 Pilus assembly protein, C-terminal domain Eco28_RS21090 IPR008969 Carboxypeptidase-like, regulatory domain superfamily Eco28_RS21090 IPR032636 Pilus assembly protein, E-set like domain Eco28_RS21100 IPR013783 Immunoglobulin-like fold Eco28_RS21100 IPR008962 PapD-like superfamily Eco28_RS21105 IPR005358 Putative zinc- or iron-chelating domain containing protein Eco28_RS21110 IPR009898 Protein of unknown function DUF1440 Eco28_RS21120 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS21120 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS21120 IPR012675 Beta-grasp domain superfamily Eco28_RS21120 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Eco28_RS21120 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS21120 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS21120 IPR036884 [2Fe-2S]-binding domain superfamily Eco28_RS21120 IPR002888 [2Fe-2S]-binding Eco28_RS21125 IPR005107 CO dehydrogenase flavoprotein, C-terminal Eco28_RS21125 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily Eco28_RS21125 IPR016166 FAD-binding domain, PCMH-type Eco28_RS21125 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS21125 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS21125 IPR002346 Molybdopterin dehydrogenase, FAD-binding Eco28_RS21130 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily Eco28_RS21130 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding Eco28_RS21130 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily Eco28_RS21130 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead Eco28_RS21135 IPR003777 XdhC- CoxI Eco28_RS21135 IPR027051 XdhC Rossmann domain Eco28_RS21140 IPR005119 LysR, substrate-binding Eco28_RS21160 IPR009610 CbtA toxin of type IV toxin-antitoxin system Eco28_RS21165 IPR009320 Antitoxin CbeA Eco28_RS21165 IPR038025 Antitoxin CbeA superfamily Eco28_RS21170 IPR009329 Protein of unknown function DUF987 Eco28_RS21175 IPR001405 Uncharacterised protein family UPF0758 Eco28_RS21175 IPR025657 RadC-like JAB domain Eco28_RS21175 IPR037518 MPN domain Eco28_RS21175 IPR020891 Uncharacterised protein family UPF0758, conserved site Eco28_RS21180 IPR004914 Antirestriction protein Eco28_RS21180 IPR042297 Antirestriction domain superfamily Eco28_RS21185 IPR026325 Protein of unknown function DUF932 Eco28_RS21190 IPR038612 YkfF-like domain superfamily Eco28_RS21190 IPR009253 Protein of unknown function DUF905 Eco28_RS21195 IPR024973 ESPR domain Eco28_RS21195 IPR012332 P22 tailspike-like, C-terminal domain superfamily Eco28_RS21195 IPR036709 Autotransporter beta-domain superfamily Eco28_RS21195 IPR011050 Pectin lyase fold/virulence factor Eco28_RS21195 IPR030930 Adhesin of bacterial autotransporter system Eco28_RS21195 IPR005546 Autotransporter beta-domain Eco28_RS21200 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS21220 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS21225 IPR008490 Transposase InsH, N-terminal Eco28_RS21225 IPR002559 Transposase, IS4-like Eco28_RS21230 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS21235 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS21235 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS21240 IPR018306 Bacteriophage T5, Orf172 DNA-binding Eco28_RS21265 IPR032466 Metal-dependent hydrolase Eco28_RS21265 IPR017947 Aryldialkylphosphatase, zinc-binding site Eco28_RS21265 IPR001559 Phosphotriesterase Eco28_RS21290 IPR029056 Ribokinase-like Eco28_RS21290 IPR002139 Ribokinase/fructokinase Eco28_RS21290 IPR011611 Carbohydrate kinase PfkB Eco28_RS21290 IPR011877 Ribokinase Eco28_RS21290 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS21300 IPR009057 Homeobox-like domain superfamily Eco28_RS21300 IPR002514 Transposase IS3/IS911family Eco28_RS21315 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS21320 IPR018951 Fumarase C, C-terminal Eco28_RS21320 IPR000362 Fumarate lyase family Eco28_RS21320 IPR020557 Fumarate lyase, conserved site Eco28_RS21320 IPR008948 L-Aspartase-like Eco28_RS21320 IPR022761 Fumarate lyase, N-terminal Eco28_RS21320 IPR024083 Fumarase/histidase, N-terminal Eco28_RS21320 IPR004708 Aspartate ammonia-lyase Eco28_RS21325 IPR004668 Anaerobic c4-dicarboxylate membrane transporter Eco28_RS21330 IPR033134 Asp/Glu racemase, active site 2 Eco28_RS21330 IPR001920 Asp/Glu racemase Eco28_RS21330 IPR015942 Asp/Glu/hydantoin racemase Eco28_RS21330 IPR004380 Aspartate racemase Eco28_RS21335 IPR000847 Transcription regulator HTH, LysR Eco28_RS21335 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS21335 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS21335 IPR005119 LysR, substrate-binding Eco28_RS21350 IPR036259 MFS transporter superfamily Eco28_RS21350 IPR011701 Major facilitator superfamily Eco28_RS21350 IPR020846 Major facilitator superfamily domain Eco28_RS21355 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Eco28_RS21355 IPR036849 Enolase-like, C-terminal domain superfamily Eco28_RS21355 IPR029017 Enolase-like, N-terminal Eco28_RS21355 IPR029065 Enolase C-terminal domain-like Eco28_RS21355 IPR023592 D-galactonate dehydratase Eco28_RS21355 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site Eco28_RS21355 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Eco28_RS21355 IPR034593 Mandelate racemase-like Eco28_RS21360 IPR000887 KDPG/KHG aldolase Eco28_RS21360 IPR013785 Aldolase-type TIM barrel Eco28_RS21365 IPR042258 2-keto-3-deoxy-galactonokinase, N-terminal Eco28_RS21365 IPR042257 2-keto-3-deoxy-galactonokinase, C-terminal domain Eco28_RS21365 IPR007729 2-keto-3-deoxy-galactonokinase Eco28_RS21370 IPR011711 GntR, C-terminal Eco28_RS21370 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS21370 IPR000524 Transcription regulator HTH, GntR Eco28_RS21370 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS21370 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS21400 IPR036397 Ribonuclease H superfamily Eco28_RS21400 IPR001584 Integrase, catalytic core Eco28_RS21400 IPR025948 HTH-like domain Eco28_RS21400 IPR009057 Homeobox-like domain superfamily Eco28_RS21400 IPR002514 Transposase IS3/IS911family Eco28_RS21400 IPR012337 Ribonuclease H-like superfamily Eco28_RS21405 IPR008878 Transposase IS66, Orf2 Eco28_RS21410 IPR024474 Zinc-finger binding domain of transposase IS66 Eco28_RS21410 IPR004291 Transposase, IS66 Eco28_RS21410 IPR039552 Transposase IS66, C-terminal Eco28_RS21410 IPR024463 Transposase TnpC, homeodomain Eco28_RS21415 IPR004736 MFS transporter, metabolite:H symporter Eco28_RS21415 IPR036259 MFS transporter superfamily Eco28_RS21415 IPR005828 Major facilitator, sugar transporter-like Eco28_RS21415 IPR020846 Major facilitator superfamily domain Eco28_RS21415 IPR011701 Major facilitator superfamily Eco28_RS21420 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS21420 IPR000843 LacI-type HTH domain Eco28_RS21420 IPR006377 Catabolite control protein A Eco28_RS21420 IPR028082 Periplasmic binding protein-like I Eco28_RS21425 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Eco28_RS21425 IPR036452 Ribonucleoside hydrolase-like Eco28_RS21425 IPR022976 Non-specific ribonucleoside hydrolase RihC Eco28_RS21425 IPR023186 Inosine/uridine-preferring nucleoside hydrolase Eco28_RS21430 IPR003416 MgtC/SapB/SrpB/YhiD family Eco28_RS21450 IPR000246 Peptidase T2, asparaginase 2 Eco28_RS21450 IPR029055 Nucleophile aminohydrolases, N-terminal Eco28_RS21465 IPR001959 Probable transposase, IS891/IS1136/IS1341 Eco28_RS21465 IPR010095 Transposase IS605, OrfB, C-terminal Eco28_RS21465 IPR021027 Transposase, putative, helix-turn-helix domain Eco28_RS21470 IPR004669 C4-dicarboxylate anaerobic carrier Eco28_RS21470 IPR018385 C4-dicarboxylate anaerobic carrier-like Eco28_RS21475 IPR036264 Bacterial exopeptidase dimerisation domain Eco28_RS21475 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site Eco28_RS21475 IPR002933 Peptidase M20 Eco28_RS21475 IPR011650 Peptidase M20, dimerisation domain Eco28_RS21475 IPR010161 Peptidase M20B, tripeptide aminopeptidase Eco28_RS21480 IPR008948 L-Aspartase-like Eco28_RS21480 IPR024083 Fumarase/histidase, N-terminal Eco28_RS21480 IPR000362 Fumarate lyase family Eco28_RS21480 IPR020557 Fumarate lyase, conserved site Eco28_RS21480 IPR018951 Fumarase C, C-terminal Eco28_RS21480 IPR004708 Aspartate ammonia-lyase Eco28_RS21480 IPR022761 Fumarate lyase, N-terminal Eco28_RS21485 IPR004668 Anaerobic c4-dicarboxylate membrane transporter Eco28_RS21490 IPR006034 Asparaginase/glutaminase-like Eco28_RS21490 IPR004550 L-asparaginase, type II Eco28_RS21490 IPR036152 Asparaginase/glutaminase-like superfamily Eco28_RS21490 IPR020827 Asparaginase/glutaminase, active site 1 Eco28_RS21490 IPR037152 L-asparaginase, N-terminal domain superfamily Eco28_RS21490 IPR040919 Asparaginase/glutaminase, C-terminal Eco28_RS21490 IPR027473 L-asparaginase, C-terminal Eco28_RS21490 IPR027474 L-asparaginase, N-terminal Eco28_RS21490 IPR027475 Asparaginase/glutaminase, active site 2 Eco28_RS21495 IPR011006 CheY-like superfamily Eco28_RS21495 IPR024187 Signal transduction response regulator, citrate/malate metabolism Eco28_RS21495 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS21525 IPR025048 Protein of unknown function DUF3987) Eco28_RS21530 IPR025048 Protein of unknown function DUF3987) Eco28_RS21555 IPR016161 Aldehyde/histidinol dehydrogenase Eco28_RS21555 IPR012134 Glutamate-5-semialdehyde dehydrogenase Eco28_RS21555 IPR000965 GPR domain Eco28_RS21555 IPR016163 Aldehyde dehydrogenase, C-terminal Eco28_RS21555 IPR016162 Aldehyde dehydrogenase, N-terminal Eco28_RS21555 IPR015590 Aldehyde dehydrogenase domain Eco28_RS21555 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site Eco28_RS21560 IPR002478 PUA domain Eco28_RS21560 IPR015947 PUA-like superfamily Eco28_RS21560 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase Eco28_RS21560 IPR019797 Glutamate 5-kinase, conserved site Eco28_RS21560 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS21560 IPR001057 Glutamate/acetylglutamate kinase Eco28_RS21560 IPR011529 Glutamate 5-kinase Eco28_RS21560 IPR036974 PUA domain superfamily Eco28_RS21560 IPR041739 Glutamate-5-kinase domain Eco28_RS21560 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS21565 IPR023614 Porin domain superfamily Eco28_RS21565 IPR001897 Porin, gammaproteobacterial Eco28_RS21565 IPR033900 Porin domain, Gram-negative type Eco28_RS21565 IPR001702 Porin, Gram-negative type Eco28_RS21565 IPR013793 Porin, Gram-negative type, conserved site Eco28_RS21570 IPR038208 Sigma factor-binding protein Crl superfamily Eco28_RS21570 IPR009986 Sigma factor-binding transcriptional regulator Crl Eco28_RS21575 IPR010520 UPF0255 family Eco28_RS21575 IPR029058 Alpha/Beta hydrolase fold Eco28_RS21580 IPR023747 Xanthine-guanine phosphoribosyltransferase Eco28_RS21580 IPR029057 Phosphoribosyltransferase-like Eco28_RS21580 IPR000836 Phosphoribosyltransferase domain Eco28_RS21585 IPR002933 Peptidase M20 Eco28_RS21585 IPR011650 Peptidase M20, dimerisation domain Eco28_RS21585 IPR001160 Peptidase M20C, Xaa-His dipeptidase Eco28_RS21590 IPR017509 Putative peptide chain release factor H Eco28_RS21590 IPR000352 Peptide chain release factor class I Eco28_RS21595 IPR036025 tRNA-splicing ligase RtcB-like superfamily Eco28_RS21600 IPR000182 GNAT domain Eco28_RS21600 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS21605 IPR036775 DNA polymerase, Y-family, little finger domain superfamily Eco28_RS21605 IPR017961 DNA polymerase, Y-family, little finger domain Eco28_RS21605 IPR022880 DNA polymerase IV Eco28_RS21605 IPR001126 UmuC domain Eco28_RS21605 IPR024728 DNA polymerase type-Y, HhH motif Eco28_RS21610 IPR036737 OmpA-like domain superfamily Eco28_RS21610 IPR006665 OmpA-like domain Eco28_RS21610 IPR025713 Motility protein B, N-terminal domain Eco28_RS21615 IPR042193 FHIPEP, domain 3 Eco28_RS21615 IPR042196 FHIPEP, domain 4 Eco28_RS21615 IPR025505 FHIPEP conserved site Eco28_RS21615 IPR001712 Type III secretion system FHIPEP Eco28_RS21615 IPR042194 FHIPEP, domain 1 Eco28_RS21620 IPR036515 Transposase IS200-like superfamily Eco28_RS21620 IPR002686 Transposase IS200-like Eco28_RS21630 IPR000064 Endopeptidase, NLPC/P60 domain Eco28_RS21630 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS21635 IPR007337 RelB antitoxin/Antitoxin DinJ Eco28_RS21635 IPR013321 Arc-type ribbon-helix-helix Eco28_RS21635 IPR026262 Antitoxin DinJ Eco28_RS21640 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family Eco28_RS21640 IPR035093 Toxin-antitoxin system, RelE/ParE toxin domain superfamily Eco28_RS21640 IPR004386 Toxin-antitoxin system, YafQ-like toxin Eco28_RS21645 IPR005490 L,D-transpeptidase catalytic domain Eco28_RS21645 IPR038063 L,D-transpeptidase catalytic domain-like Eco28_RS21650 IPR026869 Putative glutamine amidotransferase type 2 Eco28_RS21650 IPR029055 Nucleophile aminohydrolases, N-terminal Eco28_RS21650 IPR017932 Glutamine amidotransferase type 2 domain Eco28_RS21655 IPR004515 Phosphoheptose isomerase Eco28_RS21655 IPR035461 GmhA/DiaA Eco28_RS21655 IPR001347 Sugar isomerase (SIS) Eco28_RS21660 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type Eco28_RS21660 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily Eco28_RS21660 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily Eco28_RS21660 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal Eco28_RS21660 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain Eco28_RS21660 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal Eco28_RS21660 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal Eco28_RS21665 IPR014453 Inhibitor of vertebrate lysozyme Eco28_RS21665 IPR036501 Inhibitor of vertebrate lysozyme superfamily Eco28_RS21670 IPR036526 Carbon-nitrogen hydrolase superfamily Eco28_RS21670 IPR003010 Carbon-nitrogen hydrolase Eco28_RS21670 IPR001110 Uncharacterised protein family UPF0012, conserved site Eco28_RS21675 IPR002559 Transposase, IS4-like Eco28_RS21675 IPR032806 H repeat-associated protein, N-terminal Eco28_RS21685 IPR002514 Transposase IS3/IS911family Eco28_RS21685 IPR036397 Ribonuclease H superfamily Eco28_RS21685 IPR009057 Homeobox-like domain superfamily Eco28_RS21685 IPR025948 HTH-like domain Eco28_RS21685 IPR001584 Integrase, catalytic core Eco28_RS21685 IPR012337 Ribonuclease H-like superfamily Eco28_RS21690 IPR008878 Transposase IS66, Orf2 Eco28_RS21695 IPR024474 Zinc-finger binding domain of transposase IS66 Eco28_RS21695 IPR039552 Transposase IS66, C-terminal Eco28_RS21695 IPR004291 Transposase, IS66 Eco28_RS21695 IPR024463 Transposase TnpC, homeodomain Eco28_RS21710 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset Eco28_RS21710 IPR006531 Gp5 N-terminal Eco28_RS21710 IPR037026 Vgr protein, OB-fold domain superfamily Eco28_RS21710 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein Eco28_RS21720 IPR008514 Type VI secretion system effector, Hcp Eco28_RS21720 IPR036624 Hcp1-like superfamily Eco28_RS21735 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath Eco28_RS21745 IPR010272 Type VI secretion system, TssF-like Eco28_RS21765 IPR010263 Type VI secretion protein, VC_A0114 Eco28_RS21790 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS21790 IPR025743 IcmF-related, N-terminal domain Eco28_RS21790 IPR009612 IcmF-related Eco28_RS21790 IPR017731 Type VI secretion system, IcmF Eco28_RS21790 IPR010623 Type VI secretion system IcmF, C-terminal Eco28_RS21835 IPR012337 Ribonuclease H-like superfamily Eco28_RS21835 IPR013520 Exonuclease, RNase T/DNA polymerase III Eco28_RS21835 IPR006309 DNA polymerase 3, epsilon subunit Eco28_RS21835 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain Eco28_RS21835 IPR036397 Ribonuclease H superfamily Eco28_RS21840 IPR012337 Ribonuclease H-like superfamily Eco28_RS21840 IPR002156 Ribonuclease H domain Eco28_RS21840 IPR036397 Ribonuclease H superfamily Eco28_RS21840 IPR022892 Ribonuclease HI Eco28_RS21845 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS21845 IPR013216 Methyltransferase type 11 Eco28_RS21845 IPR026669 Arsenite methyltransferase-like Eco28_RS21850 IPR035680 Hydroxyacylglutathione hydrolase, MBL domain Eco28_RS21850 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain Eco28_RS21850 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Eco28_RS21850 IPR001279 Metallo-beta-lactamase Eco28_RS21850 IPR017782 Hydroxyacylglutathione hydrolase Eco28_RS21855 IPR000189 Prokaryotic transglycosylase, active site Eco28_RS21855 IPR023346 Lysozyme-like domain superfamily Eco28_RS21855 IPR018392 LysM domain Eco28_RS21855 IPR008258 Transglycosylase SLT domain 1 Eco28_RS21855 IPR036779 LysM domain superfamily Eco28_RS21860 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS21860 IPR013216 Methyltransferase type 11 Eco28_RS21865 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Eco28_RS21865 IPR005135 Endonuclease/exonuclease/phosphatase Eco28_RS21865 IPR022958 Uncharacterised protein family UPF0294 Eco28_RS21870 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS21870 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS21870 IPR005119 LysR, substrate-binding Eco28_RS21870 IPR000847 Transcription regulator HTH, LysR Eco28_RS21875 IPR023210 NADP-dependent oxidoreductase domain Eco28_RS21875 IPR020471 Aldo/keto reductase Eco28_RS21875 IPR018170 Aldo/keto reductase, conserved site Eco28_RS21875 IPR036812 NADP-dependent oxidoreductase domain superfamily Eco28_RS21910 IPR023214 HAD superfamily Eco28_RS21910 IPR006543 Histidinol-phosphate phosphatase Eco28_RS21910 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Eco28_RS21910 IPR036412 HAD-like superfamily Eco28_RS21910 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase Eco28_RS21915 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal Eco28_RS21915 IPR026253 Methionine import ATP-binding protein MetN Eco28_RS21915 IPR003593 AAA+ ATPase domain Eco28_RS21915 IPR003439 ABC transporter-like Eco28_RS21915 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS21915 IPR012692 ABC transporter, methionine import, ATP-binding protein MetN, proteobacteria Eco28_RS21915 IPR018449 NIL domain Eco28_RS21915 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain Eco28_RS21915 IPR017871 ABC transporter, conserved site Eco28_RS21920 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS21920 IPR035906 MetI-like superfamily Eco28_RS21925 IPR004872 Lipoprotein NlpA family Eco28_RS21930 IPR030852 Outer membrane lipoprotein RcsF Eco28_RS21935 IPR036414 YaeB, N-terminal domain superfamily Eco28_RS21935 IPR040372 YaeB-like Eco28_RS21935 IPR036413 YaeB-like superfamily Eco28_RS21935 IPR023370 TrmO-like, N-terminal domain Eco28_RS21935 IPR023368 Uncharacterised protein family UPF0066, conserved site Eco28_RS21935 IPR041369 TrmO, C-terminal Eco28_RS21940 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 Eco28_RS21940 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) Eco28_RS21940 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS21940 IPR004154 Anticodon-binding Eco28_RS21940 IPR036621 Anticodon-binding domain superfamily Eco28_RS21940 IPR002316 Proline-tRNA ligase, class IIa Eco28_RS21940 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain Eco28_RS21940 IPR033730 Prokaryote proline-tRNA ligase core domain Eco28_RS21940 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type Eco28_RS21940 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily Eco28_RS21945 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS21945 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Eco28_RS21950 IPR038139 NlpE, C-terminal domain superfamily Eco28_RS21950 IPR033450 NlpE, C-terminal OB domain Eco28_RS21950 IPR007298 Copper resistance lipoprotein NlpE Eco28_RS21955 IPR000352 Peptide chain release factor class I Eco28_RS21960 IPR038590 YaeQ superfamily Eco28_RS21960 IPR011335 Restriction endonuclease type II-like Eco28_RS21960 IPR009822 YaeQ Eco28_RS21965 IPR009624 Uncharacterised protein family UPF0253 Eco28_RS21970 IPR038626 Rof-like superfamily Eco28_RS21970 IPR023534 Rof/RNase P-like Eco28_RS21970 IPR009778 Modulator of Rho-dependent transcription termination Eco28_RS21975 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS21975 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal Eco28_RS21975 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Eco28_RS21975 IPR012094 tRNA(Ile)-lysidine synthase Eco28_RS21975 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal Eco28_RS21975 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain Eco28_RS21980 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain Eco28_RS21980 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Eco28_RS21980 IPR037478 YwkD-like domain Eco28_RS21980 IPR037523 Vicinal oxygen chelate (VOC) domain Eco28_RS21985 IPR011193 Ornithine/lysine/arginine decarboxylase Eco28_RS21985 IPR000310 Orn/Lys/Arg decarboxylase, major domain Eco28_RS21985 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal Eco28_RS21985 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily Eco28_RS21985 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS21985 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal Eco28_RS21985 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS21985 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS21990 IPR001095 Acetyl-CoA carboxylase, alpha subunit Eco28_RS21990 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS21990 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal Eco28_RS21995 IPR029460 DNA polymerase, helix-hairpin-helix motif Eco28_RS21995 IPR004805 DNA polymerase III, alpha subunit Eco28_RS21995 IPR003141 Polymerase/histidinol phosphatase, N-terminal Eco28_RS21995 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain Eco28_RS21995 IPR016195 Polymerase/histidinol phosphatase-like Eco28_RS21995 IPR004013 PHP domain Eco28_RS21995 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Eco28_RS21995 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain Eco28_RS21995 IPR040982 DNA polymerase III alpha subunit finger domain Eco28_RS22000 IPR001352 Ribonuclease HII/HIII Eco28_RS22000 IPR022898 Ribonuclease HII Eco28_RS22000 IPR036397 Ribonuclease H superfamily Eco28_RS22000 IPR012337 Ribonuclease H-like superfamily Eco28_RS22000 IPR024567 Ribonuclease HII/HIII domain Eco28_RS22005 IPR003835 Glycosyl transferase, family 19 Eco28_RS22010 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal Eco28_RS22010 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily Eco28_RS22010 IPR001451 Hexapeptide repeat Eco28_RS22010 IPR018357 Hexapeptide transferase, conserved site Eco28_RS22010 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase Eco28_RS22010 IPR011004 Trimeric LpxA-like superfamily Eco28_RS22015 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ Eco28_RS22015 IPR029069 HotDog domain superfamily Eco28_RS22015 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ Eco28_RS22020 IPR018357 Hexapeptide transferase, conserved site Eco28_RS22020 IPR001451 Hexapeptide repeat Eco28_RS22020 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD Eco28_RS22020 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region Eco28_RS22020 IPR011004 Trimeric LpxA-like superfamily Eco28_RS22025 IPR024930 Skp domain superfamily Eco28_RS22025 IPR005632 Chaperone protein Skp Eco28_RS22030 IPR000184 Bacterial surface antigen (D15) Eco28_RS22030 IPR010827 POTRA domain, BamA/TamA-like Eco28_RS22030 IPR034746 POTRA domain Eco28_RS22030 IPR023707 Outer membrane protein assembly factor BamA Eco28_RS22030 IPR039910 Surface antigen D15-like Eco28_RS22035 IPR041489 PDZ domain 6 Eco28_RS22035 IPR001478 PDZ domain Eco28_RS22035 IPR008915 Peptidase M50 Eco28_RS22035 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase Eco28_RS22035 IPR036034 PDZ superfamily Eco28_RS22040 IPR000374 Phosphatidate cytidylyltransferase Eco28_RS22045 IPR001441 Decaprenyl diphosphate synthase-like Eco28_RS22045 IPR036424 Decaprenyl diphosphate synthase-like superfamily Eco28_RS22045 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site Eco28_RS22050 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase Eco28_RS22050 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal Eco28_RS22050 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal Eco28_RS22050 IPR026877 DXP reductoisomerase C-terminal domain Eco28_RS22050 IPR036169 DXP reductoisomerase, C-terminal domain superfamily Eco28_RS22050 IPR036291 NAD(P)-binding domain superfamily Eco28_RS22055 IPR036191 RRF superfamily Eco28_RS22055 IPR023584 Ribosome recycling factor domain Eco28_RS22055 IPR002661 Ribosome recycling factor Eco28_RS22060 IPR015963 Uridylate kinase, bacteria Eco28_RS22060 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS22060 IPR011817 Uridylate kinase Eco28_RS22060 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS22065 IPR009060 UBA-like superfamily Eco28_RS22065 IPR001816 Translation elongation factor EFTs/EF1B Eco28_RS22065 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation Eco28_RS22065 IPR036402 Elongation factor Ts, dimerisation domain superfamily Eco28_RS22065 IPR018101 Translation elongation factor Ts, conserved site Eco28_RS22075 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily Eco28_RS22075 IPR001865 Ribosomal protein S2 Eco28_RS22075 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid Eco28_RS22075 IPR018130 Ribosomal protein S2, conserved site Eco28_RS22085 IPR000994 Peptidase M24 Eco28_RS22085 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 Eco28_RS22085 IPR001714 Peptidase M24, methionine aminopeptidase Eco28_RS22085 IPR036005 Creatinase/aminopeptidase-like Eco28_RS22090 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase Eco28_RS22090 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme Eco28_RS22090 IPR002912 ACT domain Eco28_RS22090 IPR003607 HD/PDEase domain Eco28_RS22090 IPR006674 HD domain Eco28_RS22090 IPR002934 Polymerase, nucleotidyl transferase domain Eco28_RS22095 IPR011004 Trimeric LpxA-like superfamily Eco28_RS22095 IPR037133 Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain superfamily Eco28_RS22095 IPR001451 Hexapeptide repeat Eco28_RS22095 IPR005664 Tetrahydrodipicolinate N-succinyltransferase, transferase hexapeptide repeat family Eco28_RS22095 IPR023180 Tetrahydrodipicolinate-N-succinyltransferase, chain A, domain 1 Eco28_RS22095 IPR018357 Hexapeptide transferase, conserved site Eco28_RS22100 IPR020911 Uncharacterised protein family UPF0325 Eco28_RS22105 IPR041522 CdaR, GGDEF-like domain Eco28_RS22105 IPR008599 Putative sugar diacid recognition Eco28_RS22105 IPR042070 PucR C-terminal helix-turn-helix domain superfamily Eco28_RS22105 IPR025736 PucR C-terminal helix-turn-helix domain Eco28_RS22110 IPR001478 PDZ domain Eco28_RS22110 IPR036034 PDZ superfamily Eco28_RS22110 IPR011782 Peptidase S1C, Do Eco28_RS22110 IPR009003 Peptidase S1, PA clan Eco28_RS22110 IPR001940 Peptidase S1C Eco28_RS22120 IPR026875 Phosphohydrolase-associated domain Eco28_RS22120 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain superfamily Eco28_RS22120 IPR020779 dNTP triphosphohydrolase, type 1 Eco28_RS22120 IPR006674 HD domain Eco28_RS22120 IPR006261 dNTP triphosphohydrolase Eco28_RS22120 IPR003607 HD/PDEase domain Eco28_RS22125 IPR035994 Nucleoside phosphorylase superfamily Eco28_RS22125 IPR000845 Nucleoside phosphorylase domain Eco28_RS22125 IPR010049 MTA/SAH nucleosidase Eco28_RS22130 IPR023544 ABC transporter, vitamin B12-binding protein Eco28_RS22130 IPR002491 ABC transporter periplasmic binding domain Eco28_RS22135 IPR005115 Uncharacterised domain UPF0126 Eco28_RS22140 IPR000361 FeS cluster biogenesis Eco28_RS22140 IPR017870 FeS cluster insertion, C-terminal, conserved site Eco28_RS22140 IPR023063 FeS cluster insertion protein ErpA Eco28_RS22140 IPR035903 HesB-like domain superfamily Eco28_RS22140 IPR016092 FeS cluster insertion protein Eco28_RS22145 IPR014743 Chloride channel, core Eco28_RS22145 IPR001807 Chloride channel, voltage gated Eco28_RS22145 IPR023861 Chloride channel, ClcA Eco28_RS22150 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase Eco28_RS22150 IPR005814 Aminotransferase class-III Eco28_RS22150 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS22150 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS22150 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS22155 IPR000522 ABC transporter, permease protein, BtuC-like Eco28_RS22155 IPR037294 ABC transporter, BtuC-like Eco28_RS22160 IPR002491 ABC transporter periplasmic binding domain Eco28_RS22165 IPR003593 AAA+ ATPase domain Eco28_RS22165 IPR003439 ABC transporter-like Eco28_RS22165 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS22165 IPR017871 ABC transporter, conserved site Eco28_RS22170 IPR012910 TonB-dependent receptor, plug domain Eco28_RS22170 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS22170 IPR010105 TonB-dependent siderophore receptor Eco28_RS22170 IPR039423 TonB-dependent receptor-like Eco28_RS22170 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS22170 IPR010916 TonB box, conserved site Eco28_RS22170 IPR010917 TonB-dependent receptor, conserved site Eco28_RS22170 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS22175 IPR023346 Lysozyme-like domain superfamily Eco28_RS22175 IPR011813 Penicillin-binding protein 1B Eco28_RS22175 IPR032730 Transglycosylase PBP1b, N-terminal transmembrane domain Eco28_RS22175 IPR001460 Penicillin-binding protein, transpeptidase Eco28_RS22175 IPR028166 Bifunctional transglycosylase second domain Eco28_RS22175 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS22175 IPR001264 Glycosyl transferase, family 51 Eco28_RS22175 IPR036950 Penicillin binding protein transglycosylase domain Eco28_RS22180 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal Eco28_RS22180 IPR010225 ATP-dependent helicase HrpB Eco28_RS22180 IPR001650 Helicase, C-terminal Eco28_RS22180 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS22180 IPR007502 Helicase-associated domain Eco28_RS22180 IPR011545 DEAD/DEAH box helicase domain Eco28_RS22180 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS22185 IPR004175 RNA 2',3'-cyclic phosphodiesterase Eco28_RS22185 IPR014051 Phosphoesterase, HXTX Eco28_RS22185 IPR009097 Cyclic phosphodiesterase Eco28_RS22190 IPR041465 SfsA, N-terminal OB domain Eco28_RS22190 IPR040452 Sugar fermentation stimulation protein, C-terminal Eco28_RS22190 IPR005224 Sugar fermentation stimulation protein Eco28_RS22195 IPR020460 Zinc finger, DksA/TraR C4-type, bacteria Eco28_RS22195 IPR020458 Zinc finger, DksA/TraR C4-type conserved site Eco28_RS22195 IPR000962 Zinc finger, DksA/TraR C4-type Eco28_RS22195 IPR012784 RNA polymerase-binding transcription factor DksA Eco28_RS22195 IPR037187 DksA, N-terminal domain superfamily Eco28_RS22200 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS22200 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain Eco28_RS22200 IPR000924 Glutamyl/glutaminyl-tRNA synthetase Eco28_RS22200 IPR022380 Glutamyl-Q tRNA(Asp) synthetase Eco28_RS22205 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Eco28_RS22205 IPR025866 Polymerase A arginine-rich C-terminal domain Eco28_RS22205 IPR010206 Poly(A) polymerase I Eco28_RS22205 IPR002646 Poly A polymerase, head domain Eco28_RS22210 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily Eco28_RS22210 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK Eco28_RS22220 IPR001829 Pili assembly chaperone, bacterial Eco28_RS22220 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS22220 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS22220 IPR008962 PapD-like superfamily Eco28_RS22220 IPR013783 Immunoglobulin-like fold Eco28_RS22220 IPR018046 Pili assembly chaperone, conserved site Eco28_RS22220 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS22225 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS22225 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS22225 IPR025949 PapC-like, C-terminal domain Eco28_RS22225 IPR037224 PapC, N-terminal domain superfamily Eco28_RS22225 IPR025885 PapC, N-terminal domain Eco28_RS22225 IPR000015 Outer membrane usher protein Eco28_RS22230 IPR008966 Adhesion domain superfamily Eco28_RS22230 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS22230 IPR000259 Fimbrial-type adhesion domain Eco28_RS22250 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS22250 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS22250 IPR003700 Ketopantoate hydroxymethyltransferase Eco28_RS22255 IPR003721 Pantoate-beta-alanine ligase Eco28_RS22255 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS22255 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain Eco28_RS22255 IPR004821 Cytidyltransferase-like domain Eco28_RS22265 IPR010106 Recombination-promoting nuclease RpnA Eco28_RS22265 IPR006842 Transposase (putative), YhgA-like Eco28_RS22280 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS22280 IPR003190 Aspartate decarboxylase Eco28_RS22285 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Eco28_RS22285 IPR002509 NodB homology domain Eco28_RS22290 IPR033887 PTS system mannose/sorbose specific IIA subunit Eco28_RS22290 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily Eco28_RS22290 IPR004701 Phosphotransferase system, mannose-type IIA component Eco28_RS22295 IPR013525 ABC-2 type transporter Eco28_RS22295 IPR000412 ABC-2 transporter Eco28_RS22300 IPR003593 AAA+ ATPase domain Eco28_RS22300 IPR003439 ABC transporter-like Eco28_RS22300 IPR017871 ABC transporter, conserved site Eco28_RS22300 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS22305 IPR036874 Carbonic anhydrase superfamily Eco28_RS22305 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site Eco28_RS22305 IPR001765 Carbonic anhydrase Eco28_RS22310 IPR005904 Hypoxanthine phosphoribosyl transferase Eco28_RS22310 IPR000836 Phosphoribosyltransferase domain Eco28_RS22310 IPR029057 Phosphoribosyltransferase-like Eco28_RS22315 IPR017511 PQQ-dependent membrane bound dehydrogenase Eco28_RS22315 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Eco28_RS22315 IPR002372 Pyrrolo-quinoline quinone repeat Eco28_RS22315 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Eco28_RS22315 IPR001479 Quinoprotein dehydrogenase, conserved site Eco28_RS22320 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS22320 IPR002355 Multicopper oxidase, copper-binding site Eco28_RS22320 IPR011707 Multicopper oxidase, type 3 Eco28_RS22320 IPR011706 Multicopper oxidase, type 2 Eco28_RS22320 IPR001117 Multicopper oxidase, type 1 Eco28_RS22320 IPR008972 Cupredoxin Eco28_RS22325 IPR019114 Chaperone lipoprotein, PulS/OutS-like Eco28_RS22325 IPR038432 PulS/OutS-like superfamily Eco28_RS22330 IPR035246 Spermidine synthase, tetramerisation domain Eco28_RS22330 IPR030374 Polyamine biosynthesis domain Eco28_RS22330 IPR030373 Polyamine biosynthesis domain, conserved site Eco28_RS22330 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS22330 IPR001045 Spermidine/spermine synthases Eco28_RS22330 IPR037163 Spermidine synthase, tetramerisation domain superfamily Eco28_RS22335 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic Eco28_RS22335 IPR016067 S-adenosylmethionine decarboxylase, core Eco28_RS22335 IPR009165 S-adenosylmethionine decarboxylase, bacterial Eco28_RS22340 IPR008249 Uncharacterised protein family UPF0231 Eco28_RS22345 IPR018136 Aconitase family, 4Fe-4S cluster binding site Eco28_RS22345 IPR015933 Aconitase B, HEAT-like domain Eco28_RS22345 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Eco28_RS22345 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Eco28_RS22345 IPR036288 Aconitase B, HEAT-like domain superfamily Eco28_RS22345 IPR004406 Aconitase B Eco28_RS22345 IPR015932 Aconitase, domain 2 Eco28_RS22345 IPR015929 Aconitase B, swivel Eco28_RS22345 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Eco28_RS22345 IPR036008 Aconitase, iron-sulfur domain Eco28_RS22355 IPR021728 Protein of unknown function DUF3300 Eco28_RS22360 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS22360 IPR023753 FAD/NAD(P)-binding domain Eco28_RS22360 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Eco28_RS22360 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Eco28_RS22360 IPR006258 Dihydrolipoamide dehydrogenase Eco28_RS22360 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site Eco28_RS22360 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Eco28_RS22365 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Eco28_RS22365 IPR000089 Biotin/lipoyl attachment Eco28_RS22365 IPR004167 Peripheral subunit-binding domain Eco28_RS22365 IPR011053 Single hybrid motif Eco28_RS22365 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex Eco28_RS22365 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain Eco28_RS22365 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Eco28_RS22365 IPR036625 E3-binding domain superfamily Eco28_RS22370 IPR029061 Thiamin diphosphate-binding fold Eco28_RS22370 IPR005474 Transketolase, N-terminal Eco28_RS22370 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II Eco28_RS22370 IPR035807 Pyruvate dehydrogenase E1 component, N-terminal Eco28_RS22370 IPR004660 Pyruvate dehydrogenase E1 component Eco28_RS22370 IPR041621 Pyruvate dehydrogenase E1 component, middle domain Eco28_RS22380 IPR011711 GntR, C-terminal Eco28_RS22380 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS22380 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS22380 IPR000524 Transcription regulator HTH, GntR Eco28_RS22380 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS22385 IPR004841 Amino acid permease/ SLC12A domain Eco28_RS22385 IPR004840 Amino acid permease, conserved site Eco28_RS22390 IPR036259 MFS transporter superfamily Eco28_RS22390 IPR001927 Sodium:galactoside symporter Eco28_RS22390 IPR018043 Sodium:galactoside symporter, conserved site Eco28_RS22390 IPR039672 Lactose permease-like Eco28_RS22395 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily Eco28_RS22395 IPR007934 Alpha-L-arabinofuranosidase B, arabinose-binding domain Eco28_RS22395 IPR036195 Alpha-L-arabinofuranosidase B, arabinose-binding domain superfamily Eco28_RS22395 IPR006710 Glycoside hydrolase, family 43 Eco28_RS22400 IPR031347 Protein AmpE Eco28_RS22405 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily Eco28_RS22405 IPR002502 N-acetylmuramoyl-L-alanine amidase domain Eco28_RS22410 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal Eco28_RS22410 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily Eco28_RS22410 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal Eco28_RS22410 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal Eco28_RS22410 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD Eco28_RS22410 IPR013785 Aldolase-type TIM barrel Eco28_RS22410 IPR004393 Nicotinate-nucleotide pyrophosphorylase Eco28_RS22420 IPR012902 Prokaryotic N-terminal methylation site Eco28_RS22425 IPR007831 General secretory system II, protein E, N-terminal Eco28_RS22425 IPR001482 Type II/IV secretion system protein Eco28_RS22425 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS22430 IPR003004 GspF/PilC family Eco28_RS22430 IPR018076 Type II secretion system F domain Eco28_RS22430 IPR042094 Type II secretion system F domain superfamily Eco28_RS22430 IPR001992 Type II secretion system conserved site Eco28_RS22435 IPR001093 IMP dehydrogenase/GMP reductase Eco28_RS22435 IPR015875 IMP dehydrogenase / GMP reductase, conserved site Eco28_RS22435 IPR005993 GMP reductase Eco28_RS22435 IPR013785 Aldolase-type TIM barrel Eco28_RS22440 IPR001977 Dephospho-CoA kinase Eco28_RS22440 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS22445 IPR009777 Cell division protein ZapD Eco28_RS22445 IPR036268 ZapD domain superfamily Eco28_RS22445 IPR027462 Z ring-associated protein D, C-terminal Eco28_RS22450 IPR013088 Zinc finger, NHR/GATA-type Eco28_RS22450 IPR005584 DNA gyrase inhibitor YacG Eco28_RS22455 IPR020476 NUDIX hydrolase Eco28_RS22455 IPR003561 Mutator MutT Eco28_RS22455 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS22455 IPR020084 NUDIX hydrolase, conserved site Eco28_RS22455 IPR000086 NUDIX hydrolase domain Eco28_RS22460 IPR004027 SEC-C motif Eco28_RS22460 IPR000185 Protein translocase subunit SecA Eco28_RS22460 IPR020937 SecA conserved site Eco28_RS22460 IPR011115 SecA DEAD-like, N-terminal Eco28_RS22460 IPR036266 SecA, Wing/Scaffold superfamily Eco28_RS22460 IPR036670 SecA, preprotein cross-linking domain superfamily Eco28_RS22460 IPR011130 SecA, preprotein cross-linking domain Eco28_RS22460 IPR011116 SecA Wing/Scaffold Eco28_RS22460 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS22460 IPR014018 SecA motor DEAD Eco28_RS22465 IPR009502 Secretion monitor Eco28_RS22470 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS22470 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase Eco28_RS22470 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal Eco28_RS22470 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal Eco28_RS22475 IPR020805 Cell division protein FtsZ, conserved site Eco28_RS22475 IPR003008 Tubulin/FtsZ, GTPase domain Eco28_RS22475 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Eco28_RS22475 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Eco28_RS22475 IPR000158 Cell division protein FtsZ Eco28_RS22475 IPR024757 Cell division protein FtsZ, C-terminal Eco28_RS22475 IPR008280 Tubulin/FtsZ, C-terminal Eco28_RS22480 IPR003494 SHS2 domain inserted in FtsA Eco28_RS22480 IPR020823 Cell division protein FtsA Eco28_RS22485 IPR026579 Cell division protein FtsQ Eco28_RS22485 IPR034746 POTRA domain Eco28_RS22485 IPR005548 Cell division protein FtsQ/DivIB Eco28_RS22485 IPR013685 POTRA domain, FtsQ-type Eco28_RS22490 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS22490 IPR011095 D-alanine--D-alanine ligase, C-terminal Eco28_RS22490 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site Eco28_RS22490 IPR005905 D-alanine--D-alanine ligase Eco28_RS22490 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS22490 IPR011127 D-alanine--D-alanine ligase, N-terminal domain Eco28_RS22490 IPR011761 ATP-grasp fold Eco28_RS22495 IPR000713 Mur ligase, N-terminal catalytic domain Eco28_RS22495 IPR036615 Mur ligase, C-terminal domain superfamily Eco28_RS22495 IPR004101 Mur ligase, C-terminal Eco28_RS22495 IPR036565 Mur-like, catalytic domain superfamily Eco28_RS22495 IPR005758 UDP-N-acetylmuramate--L-alanine ligase Eco28_RS22495 IPR013221 Mur ligase, central Eco28_RS22500 IPR004276 Glycosyltransferase family 28, N-terminal domain Eco28_RS22500 IPR006009 N-acetylglucosaminyltransferase, MurG Eco28_RS22500 IPR007235 Glycosyl transferase, family 28, C-terminal Eco28_RS22505 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site Eco28_RS22505 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA Eco28_RS22505 IPR013437 Probable peptidoglycan glycosyltransferase FtsW Eco28_RS22510 IPR036565 Mur-like, catalytic domain superfamily Eco28_RS22510 IPR004101 Mur ligase, C-terminal Eco28_RS22510 IPR036615 Mur ligase, C-terminal domain superfamily Eco28_RS22510 IPR013221 Mur ligase, central Eco28_RS22510 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase Eco28_RS22515 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase Eco28_RS22515 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site Eco28_RS22515 IPR000715 Glycosyl transferase, family 4 Eco28_RS22520 IPR036615 Mur ligase, C-terminal domain superfamily Eco28_RS22520 IPR004101 Mur ligase, C-terminal Eco28_RS22520 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase Eco28_RS22520 IPR035911 MurE/MurF, N-terminal Eco28_RS22520 IPR000713 Mur ligase, N-terminal catalytic domain Eco28_RS22520 IPR013221 Mur ligase, central Eco28_RS22520 IPR036565 Mur-like, catalytic domain superfamily Eco28_RS22525 IPR036565 Mur-like, catalytic domain superfamily Eco28_RS22525 IPR004101 Mur ligase, C-terminal Eco28_RS22525 IPR036615 Mur ligase, C-terminal domain superfamily Eco28_RS22525 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase Eco28_RS22525 IPR000713 Mur ligase, N-terminal catalytic domain Eco28_RS22525 IPR035911 MurE/MurF, N-terminal Eco28_RS22525 IPR013221 Mur ligase, central Eco28_RS22530 IPR001460 Penicillin-binding protein, transpeptidase Eco28_RS22530 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS22530 IPR036138 Penicillin-binding protein, dimerisation domain superfamily Eco28_RS22530 IPR037532 Peptidoglycan D,D-transpeptidase FtsI Eco28_RS22530 IPR005311 Penicillin-binding protein, dimerisation domain Eco28_RS22535 IPR011922 Cell division protein FtsL Eco28_RS22540 IPR002903 Ribosomal RNA small subunit methyltransferase H Eco28_RS22540 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily Eco28_RS22540 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS22545 IPR003444 Transcriptional regulator MraZ Eco28_RS22545 IPR035644 MraZ, C-terminal Eco28_RS22545 IPR020603 MraZ domain Eco28_RS22545 IPR038619 MraZ superfamily Eco28_RS22545 IPR007159 SpoVT-AbrB domain Eco28_RS22545 IPR037914 SpoVT-AbrB domain superfamily Eco28_RS22545 IPR035642 MraZ, N-terminal Eco28_RS22555 IPR001761 Periplasmic binding protein/LacI sugar binding domain Eco28_RS22555 IPR000843 LacI-type HTH domain Eco28_RS22555 IPR012781 D-fructose-responsive transcription factor Eco28_RS22555 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS22555 IPR028082 Periplasmic binding protein-like I Eco28_RS22565 IPR019455 Acetolactate synthase, small subunit, C-terminal Eco28_RS22565 IPR002912 ACT domain Eco28_RS22565 IPR039557 AHAS, ACT domain Eco28_RS22565 IPR004789 Acetolactate synthase, small subunit Eco28_RS22565 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Eco28_RS22570 IPR012846 Acetolactate synthase, large subunit, biosynthetic Eco28_RS22570 IPR039368 Acetolactate synthase large subunit, TPP binding domain Eco28_RS22570 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Eco28_RS22570 IPR000399 TPP-binding enzyme, conserved site Eco28_RS22570 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Eco28_RS22570 IPR012000 Thiamine pyrophosphate enzyme, central domain Eco28_RS22570 IPR029061 Thiamin diphosphate-binding fold Eco28_RS22570 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS22575 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS22575 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS22575 IPR005119 LysR, substrate-binding Eco28_RS22575 IPR000847 Transcription regulator HTH, LysR Eco28_RS22580 IPR012570 Leucine operon leader peptide Eco28_RS22585 IPR000891 Pyruvate carboxyltransferase Eco28_RS22585 IPR005671 2-isopropylmalate synthase, bacterial-type Eco28_RS22585 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain Eco28_RS22585 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site Eco28_RS22585 IPR013785 Aldolase-type TIM barrel Eco28_RS22585 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily Eco28_RS22590 IPR004429 Isopropylmalate dehydrogenase Eco28_RS22590 IPR024084 Isopropylmalate dehydrogenase-like domain Eco28_RS22590 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site Eco28_RS22595 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain Eco28_RS22595 IPR004430 3-isopropylmalate dehydratase, large subunit Eco28_RS22595 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Eco28_RS22595 IPR018136 Aconitase family, 4Fe-4S cluster binding site Eco28_RS22595 IPR036008 Aconitase, iron-sulfur domain Eco28_RS22595 IPR033941 3-Isopropylmalate dehydratase, catalytic domain Eco28_RS22600 IPR004431 3-isopropylmalate dehydratase, small subunit Eco28_RS22600 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel Eco28_RS22600 IPR033940 3-isopropylmalate dehydratase, swivel domain Eco28_RS22600 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain Eco28_RS22610 IPR000914 Solute-binding protein family 5 domain Eco28_RS22610 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain Eco28_RS22610 IPR039424 Solute-binding protein family 5 Eco28_RS22610 IPR023767 Transcriptional regulator SgrR Eco28_RS22620 IPR006061 Solute-binding family 1, conserved site Eco28_RS22620 IPR005948 Thiamine/thiamin pyrophosphate-binding periplasmic protein, ABC transporter Eco28_RS22620 IPR005967 Thiamin/thiamin pyrophosphate ABC transporter, substrate-binding protein, Proteobacteria Eco28_RS22625 IPR035906 MetI-like superfamily Eco28_RS22625 IPR005947 Thiamine ABC transporter, permease protein Eco28_RS22625 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS22630 IPR003593 AAA+ ATPase domain Eco28_RS22630 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS22630 IPR005968 Thiamine ABC transporter, ATP-binding protein ThiQ Eco28_RS22630 IPR003439 ABC transporter-like Eco28_RS22630 IPR017871 ABC transporter, conserved site Eco28_RS22635 IPR032818 DedA family Eco28_RS22635 IPR032816 SNARE associated Golgi protein Eco28_RS22640 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS22640 IPR037923 Transcription regulator HTH-like Eco28_RS22640 IPR009057 Homeobox-like domain superfamily Eco28_RS22640 IPR003313 AraC-type arabinose-binding/dimerisation domain Eco28_RS22640 IPR018062 HTH domain AraC-type, conserved site Eco28_RS22640 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS22650 IPR005929 Ribulokinase Eco28_RS22650 IPR018485 Carbohydrate kinase, FGGY, C-terminal Eco28_RS22655 IPR024664 L-arabinose isomerase, C-terminal Eco28_RS22655 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily Eco28_RS22655 IPR038583 L-arabinose isomerase, N-terminal domain superfamily Eco28_RS22655 IPR004216 L-fucose/L-arabinose isomerase, C-terminal Eco28_RS22655 IPR003762 L-arabinose isomerase Eco28_RS22660 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Eco28_RS22660 IPR033748 L-ribulose-5-phosphate 4-epimerase AraD Eco28_RS22660 IPR001303 Class II aldolase/adducin N-terminal Eco28_RS22660 IPR004661 L-ribulose-5-phosphate 4-epimerase Eco28_RS22665 IPR042087 DNA polymerase family B, C-terminal domain Eco28_RS22665 IPR036397 Ribonuclease H superfamily Eco28_RS22665 IPR012337 Ribonuclease H-like superfamily Eco28_RS22665 IPR023211 DNA polymerase, palm domain superfamily Eco28_RS22665 IPR006172 DNA-directed DNA polymerase, family B Eco28_RS22665 IPR017964 DNA-directed DNA polymerase, family B, conserved site Eco28_RS22665 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain Eco28_RS22665 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain Eco28_RS22670 IPR040766 RapA, N-terminal Tudor-like domain 2 Eco28_RS22670 IPR040765 RapA, N-terminal Tudor like domain 1 Eco28_RS22670 IPR038718 SNF2-like, N-terminal domain superfamily Eco28_RS22670 IPR022737 RNA polymerase recycling, bacterial, C-terminal Eco28_RS22670 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS22670 IPR023949 RNA polymerase-associated protein RapA Eco28_RS22670 IPR001650 Helicase, C-terminal Eco28_RS22670 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS22670 IPR000330 SNF2-related, N-terminal domain Eco28_RS22675 IPR006145 Pseudouridine synthase, RsuA/RluA Eco28_RS22675 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site Eco28_RS22675 IPR006225 Pseudouridine synthase, RluC/RluD Eco28_RS22675 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS22685 IPR001623 DnaJ domain Eco28_RS22685 IPR029024 TerB-like Eco28_RS22685 IPR036869 Chaperone J-domain superfamily Eco28_RS22685 IPR007791 Co-chaperone DjlA, N-terminal Eco28_RS22685 IPR023749 Co-chaperone DjlA Eco28_RS22690 IPR005653 Organic solvent tolerance-like, N-terminal Eco28_RS22690 IPR020889 LPS-assembly protein LptD Eco28_RS22690 IPR007543 LptD, C-terminal Eco28_RS22695 IPR023034 Peptidyl-prolyl isomerase SurA Eco28_RS22695 IPR027304 Trigger factor/SurA domain superfamily Eco28_RS22695 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Eco28_RS22695 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type Eco28_RS22695 IPR015391 SurA N-terminal Eco28_RS22700 IPR005255 PdxA family Eco28_RS22700 IPR037510 4-hydroxythreonine-4-phosphate dehydrogenase Eco28_RS22705 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site Eco28_RS22705 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Eco28_RS22705 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS22705 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal Eco28_RS22705 IPR011530 Ribosomal RNA adenine dimethylase Eco28_RS22705 IPR023165 rRNA adenine dimethylase-like Eco28_RS22710 IPR007474 ApaG domain Eco28_RS22710 IPR036767 ApaG domain superfamily Eco28_RS22710 IPR023065 Uncharacterised protein family ApaG Eco28_RS22715 IPR029052 Metallo-dependent phosphatase-like Eco28_RS22715 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Eco28_RS22715 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) Eco28_RS22730 IPR001796 Dihydrofolate reductase domain Eco28_RS22730 IPR017925 Dihydrofolate reductase conserved site Eco28_RS22730 IPR012259 Dihydrofolate reductase Eco28_RS22730 IPR024072 Dihydrofolate reductase-like domain superfamily Eco28_RS22735 IPR023941 Glutathione-regulated potassium-efflux system protein KefC Eco28_RS22735 IPR006153 Cation/H+ exchanger Eco28_RS22735 IPR004771 K+/H+ exchanger Eco28_RS22735 IPR006036 Potassium uptake protein TrkA Eco28_RS22735 IPR003148 Regulator of K+ conductance, N-terminal Eco28_RS22735 IPR038770 Sodium/solute symporter superfamily Eco28_RS22735 IPR036291 NAD(P)-binding domain superfamily Eco28_RS22740 IPR003680 Flavodoxin-like fold Eco28_RS22740 IPR029039 Flavoprotein-like superfamily Eco28_RS22740 IPR023948 Glutathione-regulated potassium-efflux system ancillary protein KefF Eco28_RS22745 IPR036259 MFS transporter superfamily Eco28_RS22745 IPR005828 Major facilitator, sugar transporter-like Eco28_RS22745 IPR020846 Major facilitator superfamily domain Eco28_RS22750 IPR012206 Ferredoxin-like, FixX Eco28_RS22755 IPR039651 Protein FixC-like Eco28_RS22755 IPR002938 FAD-binding domain Eco28_RS22755 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS22760 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS22760 IPR023461 Electron transfer flavoprotein FixB subunit Eco28_RS22760 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site Eco28_RS22760 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal Eco28_RS22760 IPR001308 Electron transfer flavoprotein alpha subunit/FixB Eco28_RS22760 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Eco28_RS22760 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS22765 IPR012255 Electron transfer flavoprotein, beta subunit Eco28_RS22765 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site Eco28_RS22765 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal Eco28_RS22765 IPR023463 Electron transfer flavoprotein, FixA subunit Eco28_RS22765 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS22765 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Eco28_RS22770 IPR000060 BCCT transporter family Eco28_RS22770 IPR023449 L-carnitine/gamma-butyrobetaine antiporter CaiT Eco28_RS22770 IPR018093 BCCT transporter, conserved site Eco28_RS22775 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal Eco28_RS22775 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal Eco28_RS22775 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily Eco28_RS22775 IPR023450 Crotonobetainyl-CoA reductase CaiA Eco28_RS22775 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal Eco28_RS22775 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain Eco28_RS22775 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily Eco28_RS22775 IPR006089 Acyl-CoA dehydrogenase, conserved site Eco28_RS22780 IPR023606 CoA-transferase family III domain superfamily Eco28_RS22780 IPR023452 L-carnitine CoA-transferase CaiB Eco28_RS22780 IPR003673 CoA-transferase family III Eco28_RS22785 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS22785 IPR020845 AMP-binding, conserved site Eco28_RS22785 IPR025110 AMP-binding enzyme, C-terminal domain Eco28_RS22785 IPR000873 AMP-dependent synthetase/ligase Eco28_RS22785 IPR023456 Crotonobetaine/carnitine-CoA ligase CaiC Eco28_RS22790 IPR014748 Enoyl-CoA hydratase, C-terminal Eco28_RS22790 IPR001753 Enoyl-CoA hydratase/isomerase Eco28_RS22790 IPR022852 Carnitinyl-CoA dehydratase Eco28_RS22790 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site Eco28_RS22790 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS22795 IPR011004 Trimeric LpxA-like superfamily Eco28_RS22795 IPR001451 Hexapeptide repeat Eco28_RS22795 IPR023446 Carnitine operon protein CaiE Eco28_RS22800 IPR020357 Transcription regulator CaiF/GrlA Eco28_RS22800 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS22810 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain Eco28_RS22810 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain Eco28_RS22810 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily Eco28_RS22810 IPR036914 Methylglyoxal synthase-like domain superfamily Eco28_RS22810 IPR006275 Carbamoyl-phosphate synthase, large subunit Eco28_RS22810 IPR011761 ATP-grasp fold Eco28_RS22810 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS22810 IPR011607 Methylglyoxal synthase-like domain Eco28_RS22810 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain Eco28_RS22810 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain Eco28_RS22815 IPR029062 Class I glutamine amidotransferase-like Eco28_RS22815 IPR006274 Carbamoyl-phosphate synthase, small subunit Eco28_RS22815 IPR017926 Glutamine amidotransferase Eco28_RS22815 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain Eco28_RS22815 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain Eco28_RS22815 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily Eco28_RS22820 IPR036291 NAD(P)-binding domain superfamily Eco28_RS22820 IPR023940 Dihydrodipicolinate reductase Eco28_RS22820 IPR022664 Dihydrodipicolinate reductase, conserved site Eco28_RS22820 IPR022663 Dihydrodipicolinate reductase, C-terminal Eco28_RS22820 IPR000846 Dihydrodipicolinate reductase, N-terminal Eco28_RS22825 IPR036452 Ribonucleoside hydrolase-like Eco28_RS22825 IPR022976 Non-specific ribonucleoside hydrolase RihC Eco28_RS22825 IPR023186 Inosine/uridine-preferring nucleoside hydrolase Eco28_RS22825 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain Eco28_RS22825 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site Eco28_RS22830 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase Eco28_RS22835 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Eco28_RS22840 IPR001872 Peptidase A8, signal peptidase II Eco28_RS22845 IPR023585 Isoleucine-tRNA ligase, type 1 Eco28_RS22845 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Eco28_RS22845 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Eco28_RS22845 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS22845 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Eco28_RS22845 IPR002300 Aminoacyl-tRNA synthetase, class Ia Eco28_RS22845 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain Eco28_RS22845 IPR010663 Zinc finger, FPG/IleRS-type Eco28_RS22845 IPR002301 Isoleucine-tRNA ligase Eco28_RS22845 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Eco28_RS22850 IPR023465 Riboflavin kinase domain superfamily Eco28_RS22850 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic Eco28_RS22850 IPR023468 Riboflavin kinase Eco28_RS22850 IPR015864 FAD synthetase Eco28_RS22850 IPR002606 Riboflavin kinase, bacterial Eco28_RS22850 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS22855 IPR020105 Uncharacterised protein family YaaY Eco28_RS22860 IPR036510 Ribosomal protein S20 superfamily Eco28_RS22860 IPR002583 Ribosomal protein S20 Eco28_RS22870 IPR002559 Transposase, IS4-like Eco28_RS22870 IPR008490 Transposase InsH, N-terminal Eco28_RS22885 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS22885 IPR013783 Immunoglobulin-like fold Eco28_RS22885 IPR008962 PapD-like superfamily Eco28_RS22885 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS22885 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS22885 IPR018046 Pili assembly chaperone, conserved site Eco28_RS22885 IPR001829 Pili assembly chaperone, bacterial Eco28_RS22890 IPR000015 Outer membrane usher protein Eco28_RS22890 IPR025949 PapC-like, C-terminal domain Eco28_RS22890 IPR025885 PapC, N-terminal domain Eco28_RS22890 IPR037224 PapC, N-terminal domain superfamily Eco28_RS22890 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS22890 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS22900 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS22900 IPR005119 LysR, substrate-binding Eco28_RS22900 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS22900 IPR000847 Transcription regulator HTH, LysR Eco28_RS22905 IPR004670 Na+/H+ antiporter NhaA Eco28_RS22905 IPR023171 Na/H antiporter domain superfamily Eco28_RS22910 IPR018084 Hok/gef cell toxic protein, conserved site Eco28_RS22910 IPR000021 Hok/gef cell toxic protein Eco28_RS22915 IPR002939 Chaperone DnaJ, C-terminal Eco28_RS22915 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily Eco28_RS22915 IPR001305 Heat shock protein DnaJ, cysteine-rich domain Eco28_RS22915 IPR008971 HSP40/DnaJ peptide-binding Eco28_RS22915 IPR001623 DnaJ domain Eco28_RS22915 IPR018253 DnaJ domain, conserved site Eco28_RS22915 IPR012724 Chaperone DnaJ Eco28_RS22915 IPR036869 Chaperone J-domain superfamily Eco28_RS22920 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Eco28_RS22920 IPR013126 Heat shock protein 70 family Eco28_RS22920 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Eco28_RS22920 IPR018181 Heat shock protein 70, conserved site Eco28_RS22920 IPR012725 Chaperone DnaK Eco28_RS22925 IPR020240 Uncharacterised protein family UPF0412, YaaI Eco28_RS22930 IPR021150 Ubiquinol-cytochrome c chaperone/UPF0174 Eco28_RS22930 IPR025217 Domain of unknown function DUF3944 Eco28_RS22935 IPR000791 Acetate transporter GPR1/FUN34/SatP family Eco28_RS22940 IPR036425 MoaB/Mog-like domain superfamily Eco28_RS22940 IPR001453 MoaB/Mog domain Eco28_RS22940 IPR008284 Molybdenum cofactor biosynthesis, conserved site Eco28_RS22945 IPR001585 Transaldolase/Fructose-6-phosphate aldolase Eco28_RS22945 IPR013785 Aldolase-type TIM barrel Eco28_RS22945 IPR004730 Transaldolase type 1 Eco28_RS22945 IPR018225 Transaldolase, active site Eco28_RS22950 IPR001463 Sodium:alanine symporter Eco28_RS22955 IPR005583 Peroxide stress protein YaaA Eco28_RS22960 IPR019638 Protein of unknown function DUF2502 Eco28_RS22965 IPR037158 Threonine synthase, N-terminal domain superfamily Eco28_RS22965 IPR001926 Pyridoxal-phosphate dependent enzyme Eco28_RS22965 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site Eco28_RS22965 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Eco28_RS22965 IPR004450 Threonine synthase-like Eco28_RS22965 IPR029144 Threonine synthase, N-terminal Eco28_RS22970 IPR006203 GHMP kinase, ATP-binding, conserved site Eco28_RS22970 IPR006204 GHMP kinase N-terminal domain Eco28_RS22970 IPR000870 Homoserine kinase Eco28_RS22970 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS22970 IPR036554 GHMP kinase, C-terminal domain superfamily Eco28_RS22970 IPR013750 GHMP kinase, C-terminal domain Eco28_RS22970 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS22975 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS22975 IPR002912 ACT domain Eco28_RS22975 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain Eco28_RS22975 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS22975 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding Eco28_RS22975 IPR018042 Aspartate kinase, conserved site Eco28_RS22975 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I Eco28_RS22975 IPR027795 CASTOR, ACT domain Eco28_RS22975 IPR001341 Aspartate kinase Eco28_RS22975 IPR019811 Homoserine dehydrogenase, conserved site Eco28_RS22975 IPR036291 NAD(P)-binding domain superfamily Eco28_RS22975 IPR001342 Homoserine dehydrogenase, catalytic Eco28_RS22980 IPR011720 Thr operon leader peptide Eco28_RS22985 IPR004384 RNA methyltransferase TrmJ/LasT Eco28_RS22985 IPR001537 tRNA/rRNA methyltransferase, SpoU type Eco28_RS22985 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Eco28_RS22985 IPR029028 Alpha/beta knot methyltransferases Eco28_RS22995 IPR011006 CheY-like superfamily Eco28_RS22995 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS22995 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS22995 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS22995 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS22995 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS23000 IPR010364 Uncharacterised protein family, inner membrane CreD Eco28_RS23005 IPR029151 Periplasmic sensor-like domain superfamily Eco28_RS23005 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS23005 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS23005 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS23005 IPR005467 Histidine kinase domain Eco28_RS23005 IPR003660 HAMP domain Eco28_RS23005 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS23005 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS23010 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS23010 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS23010 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS23010 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS23010 IPR011006 CheY-like superfamily Eco28_RS23010 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS23015 IPR010292 Uncharacterised protein family CreA Eco28_RS23020 IPR010499 Bacterial transcription activator, effector binding Eco28_RS23020 IPR011256 Regulatory factor, effector binding domain superfamily Eco28_RS23020 IPR018062 HTH domain AraC-type, conserved site Eco28_RS23020 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS23020 IPR009057 Homeobox-like domain superfamily Eco28_RS23020 IPR029442 GyrI-like small molecule binding domain Eco28_RS23020 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS23025 IPR023086 Phosphoglycerate mutase, GpmB, probable Eco28_RS23025 IPR029033 Histidine phosphatase superfamily Eco28_RS23025 IPR013078 Histidine phosphatase superfamily, clade-1 Eco28_RS23025 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Eco28_RS23030 IPR029001 Inosine triphosphate pyrophosphatase-like Eco28_RS23030 IPR002786 Inosine/xanthosine triphosphatase Eco28_RS23030 IPR026533 Non-canonical purine NTP phosphatase/PRRC1 Eco28_RS23035 IPR000831 Trp repressor Eco28_RS23035 IPR038116 TrpR-like superfamily Eco28_RS23035 IPR010921 Trp repressor/replication initiator Eco28_RS23035 IPR013335 Trp repressor, bacterial Eco28_RS23040 IPR008939 Lytic transglycosylase, superhelical U-shaped Eco28_RS23040 IPR023346 Lysozyme-like domain superfamily Eco28_RS23040 IPR037061 Lytic transglycosylase, superhelical linker domain superfamily Eco28_RS23040 IPR012289 Lytic transglycosylase, superhelical linker Eco28_RS23040 IPR008258 Transglycosylase SLT domain 1 Eco28_RS23040 IPR000189 Prokaryotic transglycosylase, active site Eco28_RS23050 IPR003593 AAA+ ATPase domain Eco28_RS23050 IPR022374 Energy-dependent translational throttle protein EttA Eco28_RS23050 IPR017871 ABC transporter, conserved site Eco28_RS23050 IPR003439 ABC transporter-like Eco28_RS23050 IPR032781 ABC-transporter extension domain Eco28_RS23050 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23055 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS23055 IPR004821 Cytidyltransferase-like domain Eco28_RS23055 IPR016429 NAD biosynthesis/regulator protein NadR Eco28_RS23055 IPR001387 Cro/C1-type helix-turn-helix domain Eco28_RS23055 IPR038727 NadR/Ttd14, AAA domain Eco28_RS23055 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS23055 IPR006417 Nicotinamide-nucleotide adenylyltransferase Eco28_RS23055 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23055 IPR041749 NadR, nicotinamide/nicotinate mononucleotide adenylyltransferase domain Eco28_RS23060 IPR041166 LapB, rubredoxin metal binding domain Eco28_RS23060 IPR003593 AAA+ ATPase domain Eco28_RS23060 IPR004504 DNA repair protein RadA Eco28_RS23060 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS23060 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS23060 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain Eco28_RS23060 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23065 IPR041449 Phosphoserine phosphatase, N-terminal Eco28_RS23065 IPR023190 Phosphoserine phosphatase, domain 2 Eco28_RS23065 IPR036412 HAD-like superfamily Eco28_RS23065 IPR023214 HAD superfamily Eco28_RS23070 IPR019305 Uncharacterised protein family Smp Eco28_RS23075 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain Eco28_RS23075 IPR023741 Lipoate-protein ligase A Eco28_RS23075 IPR019491 Lipoate protein ligase, C-terminal Eco28_RS23075 IPR004562 Lipoyltransferase/lipoate-protein ligase Eco28_RS23085 IPR004402 Purine nucleoside phosphorylase DeoD-type Eco28_RS23085 IPR000845 Nucleoside phosphorylase domain Eco28_RS23085 IPR018016 Nucleoside phosphorylase, conserved site Eco28_RS23085 IPR035994 Nucleoside phosphorylase superfamily Eco28_RS23090 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS23090 IPR010045 Phosphopentomutase Eco28_RS23090 IPR006124 Metalloenzyme Eco28_RS23090 IPR024052 Phosphopentomutase DeoB cap domain superfamily Eco28_RS23095 IPR000312 Glycosyl transferase, family 3 Eco28_RS23095 IPR017459 Glycosyl transferase family 3, N-terminal domain Eco28_RS23095 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Eco28_RS23095 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily Eco28_RS23095 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal Eco28_RS23095 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic Eco28_RS23095 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site Eco28_RS23095 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase Eco28_RS23095 IPR013465 Thymidine phosphorylase Eco28_RS23095 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Eco28_RS23100 IPR023649 Deoxyribose-phosphate aldolase type II Eco28_RS23100 IPR002915 DeoC/FbaB/ lacD aldolase Eco28_RS23100 IPR011343 Deoxyribose-phosphate aldolase Eco28_RS23100 IPR013785 Aldolase-type TIM barrel Eco28_RS23105 IPR016905 Glycyl radical enzyme, HI0521, predicted Eco28_RS23110 IPR007197 Radical SAM Eco28_RS23110 IPR001989 Radical-activating enzyme, conserved site Eco28_RS23110 IPR012839 Organic radical enzyme activase Eco28_RS23110 IPR034457 Organic radical-activating enzymes Eco28_RS23110 IPR023912 Putative glycyl-radical enzyme activating enzyme YjjW Eco28_RS23110 IPR013785 Aldolase-type TIM barrel Eco28_RS23110 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS23110 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS23115 IPR018228 Deoxyribonuclease, TatD-related, conserved site Eco28_RS23115 IPR032466 Metal-dependent hydrolase Eco28_RS23115 IPR001130 TatD family Eco28_RS23120 IPR037483 YjjU-like Eco28_RS23120 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Eco28_RS23120 IPR002641 Patatin-like phospholipase domain Eco28_RS23125 IPR009760 Protein of unknown function DUF1328 Eco28_RS23130 IPR014004 Transport-associated and nodulation domain, bacteria Eco28_RS23130 IPR007055 BON domain Eco28_RS23135 IPR000795 Transcription factor, GTP-binding domain Eco28_RS23135 IPR035647 EF-G domain III/V-like Eco28_RS23135 IPR031157 Tr-type G domain, conserved site Eco28_RS23135 IPR004161 Translation elongation factor EFTu-like, domain 2 Eco28_RS23135 IPR038467 Peptide chain release factor 3, C-terminal domain superfamily Eco28_RS23135 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS23135 IPR005225 Small GTP-binding protein domain Eco28_RS23135 IPR004548 Peptide chain release factor 3 Eco28_RS23135 IPR041732 Peptide chain release factor 3, GTP-binding domain Eco28_RS23135 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23135 IPR032090 Peptide chain release factor 3, C-terminal Eco28_RS23140 IPR036412 HAD-like superfamily Eco28_RS23140 IPR006439 HAD hydrolase, subfamily IA Eco28_RS23140 IPR023214 HAD superfamily Eco28_RS23140 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB Eco28_RS23140 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS23140 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Eco28_RS23145 IPR006464 N-acetyltransferase RimI/Ard1 Eco28_RS23145 IPR000182 GNAT domain Eco28_RS23145 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS23150 IPR036654 DNA polymerase III, psi subunit superfamily Eco28_RS23150 IPR004615 DNA polymerase III, psi subunit Eco28_RS23150 IPR018382 DNA polymerase III, psi subunit, subgroup Eco28_RS23155 IPR023543 rRNA small subunit methyltransferase C Eco28_RS23155 IPR013675 Methyltransferase small, N-terminal Eco28_RS23155 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS23155 IPR007848 Methyltransferase small domain Eco28_RS23155 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS23175 IPR009885 Protein of unknown function DUF1435 Eco28_RS23180 IPR022770 Ferric iron reductase FhuF domain Eco28_RS23180 IPR024726 Ferric iron reductase, C-terminal Eco28_RS23180 IPR008090 Ferric iron reductase Eco28_RS23185 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS23185 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS23185 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS23190 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS23190 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS23195 IPR010619 Putative threonine/serine exporter Eco28_RS23200 IPR024528 Threonine/Serine exporter, ThrE Eco28_RS23200 IPR020914 Uncharacterised protein family UPF0442 Eco28_RS23205 IPR020917 Primosomal protein 1 Eco28_RS23205 IPR040480 DnaT, DNA-binding domain Eco28_RS23210 IPR002611 IstB-like ATP-binding protein Eco28_RS23210 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23210 IPR028350 DNA replication protein DnaC/insertion sequence putative ATP-binding protein Eco28_RS23210 IPR003593 AAA+ ATPase domain Eco28_RS23215 IPR019637 Protein of unknown function DUF2501 Eco28_RS23220 IPR020881 Phosphoglycerol transferase I Eco28_RS23220 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS23220 IPR000917 Sulfatase, N-terminal Eco28_RS23225 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS23225 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS23225 IPR011032 GroES-like superfamily Eco28_RS23225 IPR036291 NAD(P)-binding domain superfamily Eco28_RS23225 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS23225 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS23230 IPR011711 GntR, C-terminal Eco28_RS23230 IPR000524 Transcription regulator HTH, GntR Eco28_RS23230 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS23230 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS23230 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS23235 IPR020846 Major facilitator superfamily domain Eco28_RS23235 IPR000849 Sugar phosphate transporter Eco28_RS23235 IPR011701 Major facilitator superfamily Eco28_RS23235 IPR036259 MFS transporter superfamily Eco28_RS23240 IPR035440 Methyl-accepting chemotaxis protein, four helix bundle domain superfamily Eco28_RS23240 IPR004090 Chemotaxis methyl-accepting receptor Eco28_RS23240 IPR004091 Chemotaxis methyl-accepting receptor, methyl-accepting site Eco28_RS23240 IPR003660 HAMP domain Eco28_RS23240 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS23240 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding Eco28_RS23255 IPR025299 CstA, C-terminal domain Eco28_RS23255 IPR003706 CstA, N-terminal domain Eco28_RS23260 IPR007423 Selenoprotein, putative Eco28_RS23265 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Eco28_RS23265 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal Eco28_RS23265 IPR036627 CobW-like, C-terminal domain superfamily Eco28_RS23265 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23270 IPR002559 Transposase, IS4-like Eco28_RS23270 IPR008490 Transposase InsH, N-terminal Eco28_RS23285 IPR006935 Helicase/UvrB, N-terminal Eco28_RS23285 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS23285 IPR001650 Helicase, C-terminal Eco28_RS23285 IPR029464 Type I restriction enzyme R protein, N-terminal domain Eco28_RS23285 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23285 IPR013670 EcoEI R protein C-terminal domain Eco28_RS23290 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily Eco28_RS23290 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS23290 IPR003356 DNA methylase, adenine-specific Eco28_RS23290 IPR002052 DNA methylase, N-6 adenine-specific, conserved site Eco28_RS23290 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Eco28_RS23295 IPR000055 Restriction endonuclease, type I, HsdS Eco28_RS23300 IPR007159 SpoVT-AbrB domain Eco28_RS23300 IPR014944 Toxin SymE-like Eco28_RS23300 IPR020883 Type I toxin-antitoxin system, SymE toxin Eco28_RS23310 IPR009506 Protein of unknown function DUF1127 Eco28_RS23315 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS23315 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS23315 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS23315 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS23315 IPR004839 Aminotransferase, class I/classII Eco28_RS23315 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS23315 IPR000524 Transcription regulator HTH, GntR Eco28_RS23320 IPR010106 Recombination-promoting nuclease RpnA Eco28_RS23320 IPR006842 Transposase (putative), YhgA-like Eco28_RS23325 IPR036259 MFS transporter superfamily Eco28_RS23325 IPR005829 Sugar transporter, conserved site Eco28_RS23325 IPR011701 Major facilitator superfamily Eco28_RS23325 IPR020846 Major facilitator superfamily domain Eco28_RS23330 IPR007383 Protein of unknown function DUF445 Eco28_RS23335 IPR010327 FldB/FldC dehydratase alpha/beta subunit Eco28_RS23340 IPR008275 CoA enzyme activase Eco28_RS23340 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Eco28_RS23345 IPR021778 Domain of unknown function DUF3343 Eco28_RS23360 IPR009722 SdiA-regulated Eco28_RS23360 IPR011042 Six-bladed beta-propeller, TolB-like Eco28_RS23365 IPR036259 MFS transporter superfamily Eco28_RS23365 IPR010645 Uncharacterised MFS-type transporter YbfB Eco28_RS23370 IPR022409 PKD/Chitinase domain Eco28_RS23370 IPR013783 Immunoglobulin-like fold Eco28_RS23370 IPR008964 Invasin/intimin cell-adhesion fragments Eco28_RS23370 IPR003535 Intimin/invasin bacterial adhesion mediator protein Eco28_RS23370 IPR003344 Big-1 (bacterial Ig-like domain 1) domain Eco28_RS23370 IPR024519 Inverse autotransporter, beta-domain Eco28_RS23370 IPR038177 Inverse autotransporter, beta-domain superfamily Eco28_RS23370 IPR015217 Invasin, domain 3 Eco28_RS23370 IPR018392 LysM domain Eco28_RS23375 IPR042080 RNA 2'-phosphotransferase, N-terminal domain Eco28_RS23375 IPR022928 RNA 2'-phosphotransferase KptA, putative Eco28_RS23375 IPR002745 Phosphotransferase KptA/Tpt1 Eco28_RS23375 IPR042081 RNA 2'-phosphotransferase, C-terminal domain Eco28_RS23385 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Eco28_RS23390 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Eco28_RS23395 IPR033826 Isoaspartyl-dipeptidase Eco28_RS23395 IPR010229 Peptidase M38, beta-aspartyl dipeptidase Eco28_RS23395 IPR006680 Amidohydrolase-related Eco28_RS23395 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS23395 IPR032466 Metal-dependent hydrolase Eco28_RS23400 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS23400 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS23400 IPR005119 LysR, substrate-binding Eco28_RS23400 IPR000847 Transcription regulator HTH, LysR Eco28_RS23405 IPR023776 Anti-adapter protein, IraD Eco28_RS23405 IPR007048 IraD/Gp25-like Eco28_RS23415 IPR021220 Protein of unknown function DUF2686 Eco28_RS23420 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS23420 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS23420 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS23420 IPR000524 Transcription regulator HTH, GntR Eco28_RS23420 IPR011711 GntR, C-terminal Eco28_RS23430 IPR013131 Mannitol dehydrogenase, N-terminal Eco28_RS23430 IPR023027 Mannitol dehydrogenase, conserved site Eco28_RS23430 IPR036291 NAD(P)-binding domain superfamily Eco28_RS23430 IPR013118 Mannitol dehydrogenase, C-terminal Eco28_RS23430 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS23430 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS23430 IPR000669 Mannitol dehydrogenase Eco28_RS23435 IPR036237 Xylose isomerase-like superfamily Eco28_RS23435 IPR004628 Mannonate dehydratase Eco28_RS23445 IPR003474 Gluconate transporter Eco28_RS23450 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS23450 IPR008966 Adhesion domain superfamily Eco28_RS23450 IPR000259 Fimbrial-type adhesion domain Eco28_RS23450 IPR015243 FimH, mannose-binding domain Eco28_RS23455 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS23455 IPR008966 Adhesion domain superfamily Eco28_RS23460 IPR000259 Fimbrial-type adhesion domain Eco28_RS23460 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS23460 IPR008966 Adhesion domain superfamily Eco28_RS23465 IPR025885 PapC, N-terminal domain Eco28_RS23465 IPR037224 PapC, N-terminal domain superfamily Eco28_RS23465 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS23465 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS23465 IPR025949 PapC-like, C-terminal domain Eco28_RS23465 IPR000015 Outer membrane usher protein Eco28_RS23470 IPR001829 Pili assembly chaperone, bacterial Eco28_RS23470 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS23470 IPR013783 Immunoglobulin-like fold Eco28_RS23470 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS23470 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS23470 IPR018046 Pili assembly chaperone, conserved site Eco28_RS23470 IPR008962 PapD-like superfamily Eco28_RS23485 IPR018973 DEAD/DEAH-box helicase, putative Eco28_RS23485 IPR011545 DEAD/DEAH box helicase domain Eco28_RS23485 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS23485 IPR001650 Helicase, C-terminal Eco28_RS23485 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23515 IPR002559 Transposase, IS4-like Eco28_RS23515 IPR008490 Transposase InsH, N-terminal Eco28_RS23535 IPR015915 Kelch-type beta propeller Eco28_RS23535 IPR019936 Mutatrotase, YjhT-like Eco28_RS23565 IPR011032 GroES-like superfamily Eco28_RS23565 IPR036291 NAD(P)-binding domain superfamily Eco28_RS23565 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS23565 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site Eco28_RS23565 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Eco28_RS23565 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS23565 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS23570 IPR006001 Carbohydrate kinase, thermoresistant glucokinase Eco28_RS23570 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23570 IPR031322 Shikimate kinase/gluconokinase Eco28_RS23580 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS23580 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS23580 IPR036291 NAD(P)-binding domain superfamily Eco28_RS23580 IPR011032 GroES-like superfamily Eco28_RS23585 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS23585 IPR036291 NAD(P)-binding domain superfamily Eco28_RS23585 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS23590 IPR003474 Gluconate transporter Eco28_RS23595 IPR028082 Periplasmic binding protein-like I Eco28_RS23595 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS23595 IPR000843 LacI-type HTH domain Eco28_RS23600 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23600 IPR033186 Helicase HerA-like C-terminal Eco28_RS23605 IPR005495 Permease LptG/LptF-related Eco28_RS23605 IPR030923 LPS export ABC transporter permease LptG Eco28_RS23610 IPR030922 LPS export ABC transporter permease LptF Eco28_RS23610 IPR005495 Permease LptG/LptF-related Eco28_RS23615 IPR023042 Peptidase M17, leucine aminopeptidase Eco28_RS23615 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal Eco28_RS23615 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B Eco28_RS23615 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal Eco28_RS23620 IPR007459 DNA polymerase III chi subunit, HolC Eco28_RS23620 IPR036768 DNA polymerase III subunit chi superfamily Eco28_RS23625 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS23625 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain Eco28_RS23625 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm Eco28_RS23625 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily Eco28_RS23625 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding Eco28_RS23625 IPR002303 Valine-tRNA ligase Eco28_RS23625 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm Eco28_RS23625 IPR033705 Valyl tRNA synthetase, anticodon-binding domain Eco28_RS23625 IPR002300 Aminoacyl-tRNA synthetase, class Ia Eco28_RS23625 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site Eco28_RS23625 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding Eco28_RS23630 IPR010295 Protein of unknown function DUF898 Eco28_RS23635 IPR000182 GNAT domain Eco28_RS23635 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS23640 IPR016716 Regulator of ribonuclease activity B Eco28_RS23640 IPR036701 RraB-like superfamily Eco28_RS23640 IPR009671 Regulator of ribonuclease activity B domain Eco28_RS23645 IPR024904 Ornithine carbamoyltransferase Eco28_RS23645 IPR002292 Ornithine/putrescine carbamoyltransferase Eco28_RS23645 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain Eco28_RS23645 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily Eco28_RS23645 IPR006130 Aspartate/ornithine carbamoyltransferase Eco28_RS23645 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding Eco28_RS23655 IPR004375 YhcH/YjgK/YiaL family Eco28_RS23655 IPR037012 YhcH/YjgK/YiaL superfamily Eco28_RS23660 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS23660 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS23660 IPR009057 Homeobox-like domain superfamily Eco28_RS23660 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS23665 IPR036291 NAD(P)-binding domain superfamily Eco28_RS23665 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS23665 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS23670 IPR038743 YjgH-like Eco28_RS23670 IPR035959 RutC-like superfamily Eco28_RS23670 IPR006175 YjgF/YER057c/UK114 family Eco28_RS23680 IPR012602 PyrBI operon leader peptide Eco28_RS23685 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding Eco28_RS23685 IPR006130 Aspartate/ornithine carbamoyltransferase Eco28_RS23685 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily Eco28_RS23685 IPR002082 Aspartate carbamoyltransferase Eco28_RS23685 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain Eco28_RS23690 IPR036793 Aspartate carbamoyltransferase regulatory subunit, N-terminal domain superfamily Eco28_RS23690 IPR036792 Aspartate carbamoyltransferase regulatory subunit, C-terminal domain superfamily Eco28_RS23690 IPR020545 Aspartate carbamoyltransferase regulatory subunit, N-terminal Eco28_RS23690 IPR002801 Aspartate transcarbamylase regulatory subunit Eco28_RS23690 IPR020542 Aspartate carbamoyltransferase regulatory subunit, C-terminal Eco28_RS23695 IPR006056 RidA family Eco28_RS23695 IPR006175 YjgF/YER057c/UK114 family Eco28_RS23695 IPR019897 RidA, conserved site Eco28_RS23695 IPR035959 RutC-like superfamily Eco28_RS23700 IPR004014 Cation-transporting P-type ATPase, N-terminal Eco28_RS23700 IPR006415 P-type ATPase, subfamily IIIB Eco28_RS23700 IPR036412 HAD-like superfamily Eco28_RS23700 IPR001757 P-type ATPase Eco28_RS23700 IPR023214 HAD superfamily Eco28_RS23700 IPR006068 Cation-transporting P-type ATPase, C-terminal Eco28_RS23700 IPR008250 P-type ATPase, A domain superfamily Eco28_RS23700 IPR023299 P-type ATPase, cytoplasmic domain N Eco28_RS23700 IPR018303 P-type ATPase, phosphorylation site Eco28_RS23700 IPR023298 P-type ATPase, transmembrane domain superfamily Eco28_RS23705 IPR012771 Trehalose operon repressor Eco28_RS23705 IPR000843 LacI-type HTH domain Eco28_RS23705 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS23705 IPR028082 Periplasmic binding protein-like I Eco28_RS23710 IPR036878 Glucose permease domain IIB Eco28_RS23710 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site Eco28_RS23710 IPR003352 Phosphotransferase system, EIIC Eco28_RS23710 IPR013013 Phosphotransferase system, EIIC component, type 1 Eco28_RS23710 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component Eco28_RS23710 IPR001996 Phosphotransferase system, IIB component, type 1 Eco28_RS23710 IPR011296 Phosphotransferase system, trehalose-specific IIBC component Eco28_RS23715 IPR012769 Trehalose-6-phosphate hydrolase Eco28_RS23715 IPR017853 Glycoside hydrolase superfamily Eco28_RS23715 IPR006047 Glycosyl hydrolase, family 13, catalytic domain Eco28_RS23715 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) Eco28_RS23715 IPR013780 Glycosyl hydrolase, all-beta Eco28_RS23720 IPR005144 ATP-cone domain Eco28_RS23720 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Eco28_RS23720 IPR001150 Glycine radical domain Eco28_RS23720 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic Eco28_RS23725 IPR013785 Aldolase-type TIM barrel Eco28_RS23725 IPR007197 Radical SAM Eco28_RS23725 IPR001989 Radical-activating enzyme, conserved site Eco28_RS23725 IPR034457 Organic radical-activating enzymes Eco28_RS23725 IPR012837 Ribonucleoside-triphosphate reductase activating, anaerobic Eco28_RS23730 IPR009155 Cytochrome b562 Eco28_RS23730 IPR010980 Cytochrome c/b562 Eco28_RS23735 IPR036059 Metalloprotease TldD/PmbA superfamily Eco28_RS23735 IPR002510 Metalloprotease TldD/PmbA Eco28_RS23735 IPR035068 Metalloprotease TldD/PmbA, N-terminal Eco28_RS23740 IPR006839 Ribosome-associated, YjgA Eco28_RS23740 IPR023153 PSPTO4464-like domain superfamily Eco28_RS23745 IPR013221 Mur ligase, central Eco28_RS23745 IPR004101 Mur ligase, C-terminal Eco28_RS23745 IPR036565 Mur-like, catalytic domain superfamily Eco28_RS23745 IPR005757 Murein peptide ligase Eco28_RS23745 IPR000713 Mur ligase, N-terminal catalytic domain Eco28_RS23745 IPR036615 Mur ligase, C-terminal domain superfamily Eco28_RS23750 IPR020548 Fructose-1,6-bisphosphatase, active site Eco28_RS23750 IPR000146 Fructose-1,6-bisphosphatase class 1 Eco28_RS23750 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal Eco28_RS23750 IPR028343 Fructose-1,6-bisphosphatase Eco28_RS23755 IPR001851 ABC transporter, permease Eco28_RS23760 IPR001851 ABC transporter, permease Eco28_RS23765 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS23765 IPR017871 ABC transporter, conserved site Eco28_RS23765 IPR003593 AAA+ ATPase domain Eco28_RS23765 IPR003439 ABC transporter-like Eco28_RS23770 IPR033893 ABC transporter periplasmic-binding protein YtfQ Eco28_RS23770 IPR028082 Periplasmic binding protein-like I Eco28_RS23770 IPR025997 Periplasmic binding protein Eco28_RS23775 IPR008162 Inorganic pyrophosphatase Eco28_RS23775 IPR036649 Inorganic pyrophosphatase superfamily Eco28_RS23780 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor Eco28_RS23780 IPR003477 mRNA interferase PemK-like Eco28_RS23785 IPR007159 SpoVT-AbrB domain Eco28_RS23785 IPR037914 SpoVT-AbrB domain superfamily Eco28_RS23785 IPR039052 Antitoxin PemI-like Eco28_RS23790 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS23790 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS23790 IPR023009 Tyrosine recombinase XerC/XerD Eco28_RS23790 IPR011931 Tyrosine recombinase XerC Eco28_RS23790 IPR010998 Integrase/recombinase, N-terminal Eco28_RS23790 IPR002104 Integrase, catalytic domain Eco28_RS23790 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS23855 IPR008766 Replication gene A protein Eco28_RS23860 IPR042051 ParM-like Eco28_RS23860 IPR009440 Plasmid segregation protein ParM/StbA Eco28_RS23880 IPR030935 Phage portal protein PBSX family, Proteobacteria Eco28_RS23880 IPR006430 Phage portal protein PBSX family Eco28_RS23970 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS23975 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS23980 IPR011083 Phage tail collar domain Eco28_RS23980 IPR037053 Phage tail collar domain superfamily Eco28_RS23985 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily Eco28_RS23985 IPR006119 Resolvase, N-terminal catalytic domain Eco28_RS23985 IPR006118 Recombinase, conserved site Eco28_RS23985 IPR009057 Homeobox-like domain superfamily Eco28_RS23985 IPR006120 Resolvase, HTH domain Eco28_RS24015 IPR020287 Tail sheath protein, C-terminal domain Eco28_RS24015 IPR035089 Tail sheath protein, subtilisin-like domain Eco28_RS24045 IPR039126 Gamma-glutamylaminecyclotransferase Eco28_RS24045 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily Eco28_RS24045 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like Eco28_RS24045 IPR013024 Gamma-glutamyl cyclotransferase-like Eco28_RS24050 IPR007452 Translocation and assembly module TamB Eco28_RS24055 IPR034746 POTRA domain Eco28_RS24055 IPR000184 Bacterial surface antigen (D15) Eco28_RS24055 IPR039910 Surface antigen D15-like Eco28_RS24055 IPR010827 POTRA domain, BamA/TamA-like Eco28_RS24055 IPR035243 TamA, POTRA domain 1 Eco28_RS24065 IPR002569 Peptide methionine sulphoxide reductase MsrA Eco28_RS24065 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily Eco28_RS24070 IPR002550 CNNM, transmembrane domain Eco28_RS24070 IPR005170 Transporter-associated domain Eco28_RS24070 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS24070 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS24070 IPR000644 CBS domain Eco28_RS24075 IPR009491 Protein of unknown function DUF1107 Eco28_RS24080 IPR006513 Conserved hypothetical protein CHP01626, YtfJ Eco28_RS24095 IPR006240 3'(2'),5'-bisphosphate nucleotidase CysQ Eco28_RS24095 IPR020550 Inositol monophosphatase, conserved site Eco28_RS24095 IPR000760 Inositol monophosphatase-like Eco28_RS24095 IPR020583 Inositol monophosphatase, metal-binding site Eco28_RS24100 IPR029052 Metallo-dependent phosphatase-like Eco28_RS24100 IPR006294 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Eco28_RS24100 IPR041827 CpdB, N-terminal metallophosphatase domain Eco28_RS24100 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type Eco28_RS24100 IPR006179 5'-Nucleotidase/apyrase Eco28_RS24100 IPR008334 5'-Nucleotidase, C-terminal Eco28_RS24100 IPR006146 5'-Nucleotidase, conserved site Eco28_RS24100 IPR036907 5'-Nucleotidase, C-terminal domain superfamily Eco28_RS24105 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS24105 IPR002577 Helix-turn-helix, HxlR type Eco28_RS24105 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS24110 IPR036291 NAD(P)-binding domain superfamily Eco28_RS24110 IPR008030 NmrA-like domain Eco28_RS24115 IPR000620 EamA domain Eco28_RS24120 IPR012312 Haemerythrin-like Eco28_RS24120 IPR023742 Iron-sulfur cluster repair protein YftE Eco28_RS24120 IPR019903 Repair of iron centres family Eco28_RS24125 IPR004840 Amino acid permease, conserved site Eco28_RS24125 IPR004841 Amino acid permease/ SLC12A domain Eco28_RS24130 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal Eco28_RS24130 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Eco28_RS24130 IPR036944 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal domain superfamily Eco28_RS24140 IPR013731 Opacity-associated protein A, N-terminal Eco28_RS24140 IPR007340 Opacity-associated protein A Eco28_RS24145 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS24145 IPR041474 HTH-type transcriptional repressor NicS, C-terminal Eco28_RS24150 IPR010095 Transposase IS605, OrfB, C-terminal Eco28_RS24150 IPR021027 Transposase, putative, helix-turn-helix domain Eco28_RS24150 IPR001959 Probable transposase, IS891/IS1136/IS1341 Eco28_RS24155 IPR036515 Transposase IS200-like superfamily Eco28_RS24155 IPR002686 Transposase IS200-like Eco28_RS24165 IPR021220 Protein of unknown function DUF2686 Eco28_RS24170 IPR020594 Ribosomal protein L9, bacteria/chloroplast Eco28_RS24170 IPR020069 Ribosomal protein L9, C-terminal Eco28_RS24170 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Eco28_RS24170 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Eco28_RS24170 IPR000244 Ribosomal protein L9 Eco28_RS24170 IPR020070 Ribosomal protein L9, N-terminal Eco28_RS24170 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Eco28_RS24175 IPR018275 Ribosomal protein S18, conserved site Eco28_RS24175 IPR036870 Ribosomal protein S18 superfamily Eco28_RS24175 IPR001648 Ribosomal protein S18 Eco28_RS24180 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS24180 IPR023646 Primosomal replication protein PriB Eco28_RS24180 IPR000424 Primosome PriB/single-strand DNA-binding Eco28_RS24185 IPR000529 Ribosomal protein S6 Eco28_RS24185 IPR020814 Ribosomal protein S6, plastid/chloroplast Eco28_RS24185 IPR020815 Ribosomal protein S6, conserved site Eco28_RS24185 IPR035980 Ribosomal protein S6 superfamily Eco28_RS24185 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Eco28_RS24190 IPR036275 YdgH-like superfamily Eco28_RS24190 IPR025543 Dodecin-like Eco28_RS24190 IPR010854 Domain of unknown function DUF1471 Eco28_RS24195 IPR023499 L-ribulose-5-phosphate 4-epimerase UlaF Eco28_RS24195 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Eco28_RS24195 IPR001303 Class II aldolase/adducin N-terminal Eco28_RS24200 IPR036237 Xylose isomerase-like superfamily Eco28_RS24200 IPR004560 L-ribulose-5-phosphate 3-epimerase Eco28_RS24200 IPR023492 L-ribulose-5-phosphate 3-epimerase, Enterobacteriaceae Eco28_RS24200 IPR013022 Xylose isomerase-like, TIM barrel domain Eco28_RS24205 IPR011060 Ribulose-phosphate binding barrel Eco28_RS24205 IPR001754 Orotidine 5'-phosphate decarboxylase domain Eco28_RS24205 IPR041710 HPS/KGPDC domain Eco28_RS24205 IPR013785 Aldolase-type TIM barrel Eco28_RS24205 IPR023942 3-keto-L-gulonate-6-phosphate decarboxylase, UlaD Eco28_RS24210 IPR016152 Phosphotransferase/anion transporter Eco28_RS24210 IPR002178 PTS EIIA type-2 domain Eco28_RS24215 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS24215 IPR036095 PTS system IIB component-like superfamily Eco28_RS24215 IPR013011 Phosphotransferase system, EIIB component, type 2 Eco28_RS24220 IPR004703 Phosphotransferase system, sugar-specific permease component Eco28_RS24225 IPR023951 L-ascorbate-6-phosphate lactonase UlaG Eco28_RS24225 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Eco28_RS24230 IPR037171 NagB/RpiA transferase-like Eco28_RS24230 IPR001034 DeoR-type HTH domain Eco28_RS24230 IPR023711 Transcription regulator HTH, UlaR Eco28_RS24230 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS24230 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS24230 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS24230 IPR014036 DeoR C-terminal sensor domain Eco28_RS24235 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain Eco28_RS24235 IPR029058 Alpha/Beta hydrolase fold Eco28_RS24240 IPR025543 Dodecin-like Eco28_RS24240 IPR010854 Domain of unknown function DUF1471 Eco28_RS24240 IPR036275 YdgH-like superfamily Eco28_RS24245 IPR036275 YdgH-like superfamily Eco28_RS24245 IPR025543 Dodecin-like Eco28_RS24245 IPR010854 Domain of unknown function DUF1471 Eco28_RS24250 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal Eco28_RS24250 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal Eco28_RS24250 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily Eco28_RS24250 IPR006089 Acyl-CoA dehydrogenase, conserved site Eco28_RS24250 IPR041504 Adaptive response protein AidB, N-terminal Eco28_RS24250 IPR034184 Putative acyl-CoA dehydrogenase AidB Eco28_RS24250 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain Eco28_RS24255 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS24255 IPR005494 Glutathionylspermidine synthase, pre-ATP-grasp-like domain Eco28_RS24260 IPR009576 Biofilm formation YgiB Eco28_RS24265 IPR007140 Protein of unknown function DUF350 Eco28_RS24270 IPR019621 Protein of unknown function DUF2491 Eco28_RS24275 IPR007157 PspA/IM30 Eco28_RS24280 IPR019231 Protein of unknown function DUF2170 Eco28_RS24290 IPR029028 Alpha/beta knot methyltransferases Eco28_RS24290 IPR029064 50S ribosomal protein L30e-like Eco28_RS24290 IPR004441 RNA methyltransferase TrmH family Eco28_RS24290 IPR001537 tRNA/rRNA methyltransferase, SpoU type Eco28_RS24290 IPR013123 RNA 2-O ribose methyltransferase, substrate binding Eco28_RS24290 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Eco28_RS24290 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB Eco28_RS24295 IPR011129 Cold shock domain Eco28_RS24295 IPR040476 RNase II/RNase R, cold shock domain Eco28_RS24295 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS24295 IPR013223 Ribonuclease B, N-terminal OB domain Eco28_RS24295 IPR001900 Ribonuclease II/R Eco28_RS24295 IPR022966 Ribonuclease II/R, conserved site Eco28_RS24295 IPR004476 Ribonuclease II/ribonuclease R Eco28_RS24295 IPR011805 Ribonuclease R Eco28_RS24295 IPR013668 Ribonuclease R winged-helix domain Eco28_RS24295 IPR022967 RNA-binding domain, S1 Eco28_RS24295 IPR003029 S1 domain Eco28_RS24300 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS24300 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS24300 IPR023761 Transcriptional repressor HTH, NsrR Eco28_RS24300 IPR030489 Transcription regulator Rrf2-type, conserved site Eco28_RS24300 IPR000944 Transcription regulator Rrf2-type Eco28_RS24305 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS24305 IPR018220 Adenylosuccinate synthase, GTP-binding site Eco28_RS24305 IPR001114 Adenylosuccinate synthetase Eco28_RS24305 IPR042111 Adenylosuccinate synthetase, domain 3 Eco28_RS24305 IPR033128 Adenylosuccinate synthase, active site Eco28_RS24305 IPR042110 Adenylosuccinate synthetase, domain 2 Eco28_RS24305 IPR042109 Adenylosuccinate synthetase, domain 1 Eco28_RS24310 IPR019201 Protein of unknown function DUF2065 Eco28_RS24315 IPR001107 Band 7 domain Eco28_RS24315 IPR036013 Band 7/SPFH domain superfamily Eco28_RS24315 IPR010200 HflC Eco28_RS24320 IPR010201 HflK Eco28_RS24320 IPR020980 Menbrane protein HflK, N-terminal Eco28_RS24320 IPR001972 Stomatin family Eco28_RS24320 IPR036013 Band 7/SPFH domain superfamily Eco28_RS24320 IPR001107 Band 7 domain Eco28_RS24325 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS24325 IPR030394 HflX-type guanine nucleotide-binding (G) domain Eco28_RS24325 IPR042108 GTPase HflX, N-terminal domain superfamily Eco28_RS24325 IPR016496 GTPase HflX Eco28_RS24325 IPR006073 GTP binding domain Eco28_RS24325 IPR032305 GTP-binding protein, middle domain Eco28_RS24325 IPR025121 GTPase HflX, N-terminal Eco28_RS24325 IPR035647 EF-G domain III/V-like Eco28_RS24330 IPR010920 LSM domain superfamily Eco28_RS24330 IPR005001 RNA-binding protein Hfq Eco28_RS24335 IPR039657 Dimethylallyltransferase Eco28_RS24335 IPR018022 IPP transferase Eco28_RS24335 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS24340 IPR002099 DNA mismatch repair protein family, N-terminal Eco28_RS24340 IPR013507 DNA mismatch repair protein, S5 domain 2-like Eco28_RS24340 IPR042121 MutL, C-terminal domain, regulatory subdomain Eco28_RS24340 IPR037198 MutL, C-terminal domain superfamily Eco28_RS24340 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS24340 IPR020667 DNA mismatch repair protein, MutL Eco28_RS24340 IPR014762 DNA mismatch repair, conserved site Eco28_RS24340 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS24340 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS24340 IPR014790 MutL, C-terminal, dimerisation Eco28_RS24340 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms Eco28_RS24340 IPR042120 MutL, C-terminal domain, dimerisation subdomain Eco28_RS24345 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain Eco28_RS24350 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS24350 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE Eco28_RS24355 IPR036652 YjeF N-terminal domain superfamily Eco28_RS24355 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase Eco28_RS24355 IPR017953 Carbohydrate kinase, predicted, conserved site Eco28_RS24355 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr Eco28_RS24355 IPR004443 YjeF N-terminal domain Eco28_RS24355 IPR029056 Ribokinase-like Eco28_RS24360 IPR009051 Alpha-helical ferredoxin Eco28_RS24360 IPR004453 Epoxyqueuosine reductase QueG Eco28_RS24360 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS24360 IPR013542 Domain of unknown function DUF1730 Eco28_RS24360 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS24380 IPR013520 Exonuclease, RNase T/DNA polymerase III Eco28_RS24380 IPR036397 Ribonuclease H superfamily Eco28_RS24380 IPR012337 Ribonuclease H-like superfamily Eco28_RS24380 IPR022894 Oligoribonuclease Eco28_RS24385 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS24385 IPR010914 RsgA GTPase domain Eco28_RS24385 IPR004881 Ribosome biogenesis GTPase RsgA Eco28_RS24385 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain Eco28_RS24390 IPR033177 Phosphatidylserine decarboxylase Eco28_RS24390 IPR003817 Phosphatidylserine decarboxylase-related Eco28_RS24390 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 Eco28_RS24395 IPR006686 Mechanosensitive ion channel MscS, conserved site Eco28_RS24395 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Eco28_RS24395 IPR023408 Mechanosensitive ion channel MscS domain superfamily Eco28_RS24395 IPR010920 LSM domain superfamily Eco28_RS24395 IPR006685 Mechanosensitive ion channel MscS Eco28_RS24395 IPR011066 Mechanosensitive ion channel MscS, C-terminal Eco28_RS24395 IPR025692 Mechanosensitive ion channel inner membrane domain 1 Eco28_RS24395 IPR024393 Mechanosensitive ion channel MscS, porin domain Eco28_RS24400 IPR002293 Amino acid/polyamine transporter I Eco28_RS24405 IPR004525 Elongation factor P--(R)-beta-lysine ligase Eco28_RS24405 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS24405 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Eco28_RS24405 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal Eco28_RS24410 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS24410 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site Eco28_RS24410 IPR005884 Fumarate reductase, flavoprotein subunit Eco28_RS24410 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit Eco28_RS24410 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily Eco28_RS24410 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain Eco28_RS24410 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily Eco28_RS24410 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal Eco28_RS24415 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS24415 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein Eco28_RS24415 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS24415 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain Eco28_RS24415 IPR012675 Beta-grasp domain superfamily Eco28_RS24415 IPR036010 2Fe-2S ferredoxin-like superfamily Eco28_RS24415 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal Eco28_RS24415 IPR009051 Alpha-helical ferredoxin Eco28_RS24415 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site Eco28_RS24420 IPR003510 Fumarate reductase, subunit C Eco28_RS24420 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit Eco28_RS24425 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit Eco28_RS24425 IPR003418 Fumarate reductase, subunit D Eco28_RS24430 IPR001466 Beta-lactamase-related Eco28_RS24430 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS24430 IPR001586 Beta-lactamase, class-C active site Eco28_RS24435 IPR012674 Calycin Eco28_RS24435 IPR002446 Lipocalin, bacterial Eco28_RS24435 IPR022271 Lipocalin, ApoD type Eco28_RS24435 IPR022272 Lipocalin family conserved site Eco28_RS24435 IPR000566 Lipocalin/cytosolic fatty-acid binding domain Eco28_RS24440 IPR000390 Small multidrug resistance protein family Eco28_RS24445 IPR012556 Entericidin A/B Eco28_RS24450 IPR012556 Entericidin A/B Eco28_RS24455 IPR008991 Translation protein SH3-like domain superfamily Eco28_RS24455 IPR011768 Translation elongation factor P Eco28_RS24455 IPR013185 Translation elongation factor, KOW-like Eco28_RS24455 IPR015365 Elongation factor P, C-terminal Eco28_RS24455 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS24455 IPR020599 Translation elongation factor P/YeiP Eco28_RS24455 IPR001059 Translation elongation factor P/YeiP, central Eco28_RS24455 IPR013852 Translation elongation factor P/YeiP, conserved site Eco28_RS24455 IPR014722 Ribosomal protein L2, domain 2 Eco28_RS24460 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Eco28_RS24460 IPR022462 Lysine-2,3-aminomutase-like Eco28_RS24460 IPR013785 Aldolase-type TIM barrel Eco28_RS24460 IPR007197 Radical SAM Eco28_RS24465 IPR031810 YjeJ-like Eco28_RS24470 IPR025294 Protein of unknown function DUF4156 Eco28_RS24475 IPR002423 Chaperonin Cpn60/TCP-1 family Eco28_RS24475 IPR018370 Chaperonin Cpn60, conserved site Eco28_RS24475 IPR027409 GroEL-like apical domain superfamily Eco28_RS24475 IPR027413 GroEL-like equatorial domain superfamily Eco28_RS24475 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Eco28_RS24475 IPR001844 Chaperonin Cpn60 Eco28_RS24480 IPR018369 Chaperonin GroES, conserved site Eco28_RS24480 IPR011032 GroES-like superfamily Eco28_RS24480 IPR037124 GroES chaperonin superfamily Eco28_RS24480 IPR020818 GroES chaperonin family Eco28_RS24485 IPR002293 Amino acid/polyamine transporter I Eco28_RS24490 IPR007313 FxsA cytoplasmic membrane protein Eco28_RS24495 IPR024083 Fumarase/histidase, N-terminal Eco28_RS24495 IPR018951 Fumarase C, C-terminal Eco28_RS24495 IPR020557 Fumarate lyase, conserved site Eco28_RS24495 IPR004708 Aspartate ammonia-lyase Eco28_RS24495 IPR022761 Fumarate lyase, N-terminal Eco28_RS24495 IPR008948 L-Aspartase-like Eco28_RS24495 IPR000362 Fumarate lyase family Eco28_RS24500 IPR004668 Anaerobic c4-dicarboxylate membrane transporter Eco28_RS24505 IPR004323 Divalent ion tolerance protein, CutA Eco28_RS24505 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Eco28_RS24505 IPR011322 Nitrogen regulatory PII-like, alpha/beta Eco28_RS24505 IPR023700 Divalent cation tolerance protein CutA, Enterobacteria Eco28_RS24510 IPR003834 Cytochrome C biogenesis protein, transmembrane domain Eco28_RS24510 IPR017937 Thioredoxin, conserved site Eco28_RS24510 IPR035671 DsbD gamma Eco28_RS24510 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain Eco28_RS24510 IPR036929 Thiol:disulfide interchange protein DsbD, N-terminal domain superfamily Eco28_RS24510 IPR036249 Thioredoxin-like superfamily Eco28_RS24510 IPR022910 Thiol:disulphide interchange protein DsbD Eco28_RS24510 IPR013766 Thioredoxin domain Eco28_RS24515 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS24515 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS24515 IPR009057 Homeobox-like domain superfamily Eco28_RS24525 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS24525 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS24525 IPR002104 Integrase, catalytic domain Eco28_RS24525 IPR010998 Integrase/recombinase, N-terminal Eco28_RS24525 IPR038488 Integrase, DNA-binding domain superfamily Eco28_RS24525 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS24525 IPR025166 Integrase, DNA-binding domain Eco28_RS24530 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS24530 IPR000843 LacI-type HTH domain Eco28_RS24530 IPR001761 Periplasmic binding protein/LacI sugar binding domain Eco28_RS24530 IPR028082 Periplasmic binding protein-like I Eco28_RS24535 IPR000111 Glycoside hydrolase family 27/36, conserved site Eco28_RS24535 IPR002252 Glycoside hydrolase family 36 Eco28_RS24535 IPR031705 Glycosyl hydrolase family 36, C-terminal Eco28_RS24535 IPR013785 Aldolase-type TIM barrel Eco28_RS24535 IPR031704 Glycosyl hydrolase family 36, N-terminal Eco28_RS24535 IPR038417 Alpha-galactosidase, N-terminal domain superfamily Eco28_RS24535 IPR017853 Glycoside hydrolase superfamily Eco28_RS24540 IPR018457 LacY/RafB permease family, conserved site Eco28_RS24540 IPR000576 LacY/RafB permease family Eco28_RS24540 IPR020846 Major facilitator superfamily domain Eco28_RS24540 IPR036259 MFS transporter superfamily Eco28_RS24545 IPR013189 Glycosyl hydrolase family 32, C-terminal Eco28_RS24545 IPR013148 Glycosyl hydrolase family 32, N-terminal Eco28_RS24545 IPR006232 Sucrose-6-phosphate hydrolase Eco28_RS24545 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily Eco28_RS24545 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily Eco28_RS24545 IPR001362 Glycoside hydrolase, family 32 Eco28_RS24545 IPR018053 Glycoside hydrolase, family 32, active site Eco28_RS24580 IPR002514 Transposase IS3/IS911family Eco28_RS24580 IPR009057 Homeobox-like domain superfamily Eco28_RS24585 IPR025948 HTH-like domain Eco28_RS24585 IPR012337 Ribonuclease H-like superfamily Eco28_RS24585 IPR009057 Homeobox-like domain superfamily Eco28_RS24585 IPR036397 Ribonuclease H superfamily Eco28_RS24585 IPR002514 Transposase IS3/IS911family Eco28_RS24585 IPR001584 Integrase, catalytic core Eco28_RS24590 IPR002559 Transposase, IS4-like Eco28_RS24590 IPR008490 Transposase InsH, N-terminal Eco28_RS24595 IPR005594 YadA-like, C-terminal Eco28_RS24595 IPR011049 Serralysin-like metalloprotease, C-terminal Eco28_RS24595 IPR008635 Coiled stalk of trimeric autotransporter adhesin Eco28_RS24595 IPR008640 Head domain of trimeric autotransporter adhesin Eco28_RS24595 IPR008126 Outer membrane adhesion, Yersinia Eco28_RS24635 IPR007985 Haemolysin expression modulating, HHA Eco28_RS24635 IPR036666 HHA superfamily Eco28_RS24655 IPR025048 Protein of unknown function DUF3987) Eco28_RS24660 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS24665 IPR005546 Autotransporter beta-domain Eco28_RS24665 IPR024973 ESPR domain Eco28_RS24665 IPR012332 P22 tailspike-like, C-terminal domain superfamily Eco28_RS24665 IPR011050 Pectin lyase fold/virulence factor Eco28_RS24665 IPR036709 Autotransporter beta-domain superfamily Eco28_RS24665 IPR030930 Adhesin of bacterial autotransporter system Eco28_RS24675 IPR026325 Protein of unknown function DUF932 Eco28_RS24680 IPR004914 Antirestriction protein Eco28_RS24680 IPR042297 Antirestriction domain superfamily Eco28_RS24685 IPR037518 MPN domain Eco28_RS24685 IPR025657 RadC-like JAB domain Eco28_RS24685 IPR001405 Uncharacterised protein family UPF0758 Eco28_RS24685 IPR020891 Uncharacterised protein family UPF0758, conserved site Eco28_RS24690 IPR009329 Protein of unknown function DUF987 Eco28_RS24700 IPR009320 Antitoxin CbeA Eco28_RS24700 IPR038025 Antitoxin CbeA superfamily Eco28_RS24705 IPR009610 CbtA toxin of type IV toxin-antitoxin system Eco28_RS24725 IPR022789 Antitoxin ParD Eco28_RS24725 IPR010985 Ribbon-helix-helix Eco28_RS24725 IPR038296 Antitoxin ParD superfamily Eco28_RS24735 IPR002104 Integrase, catalytic domain Eco28_RS24735 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS24735 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS24735 IPR038488 Integrase, DNA-binding domain superfamily Eco28_RS24735 IPR025166 Integrase, DNA-binding domain Eco28_RS24735 IPR010998 Integrase/recombinase, N-terminal Eco28_RS24745 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS24745 IPR041679 DNA2/NAM7 helicase-like, AAA domain Eco28_RS24745 IPR025202 Phospholipase D-like domain Eco28_RS24745 IPR001736 Phospholipase D/Transphosphatidylase Eco28_RS24750 IPR000917 Sulfatase, N-terminal Eco28_RS24750 IPR040423 Phosphoethanolamine transferase Eco28_RS24750 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS24755 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel Eco28_RS24755 IPR027385 Outer membrane protein beta-barrel domain Eco28_RS24765 IPR005310 PapG, carbohydrate-binding domain Eco28_RS24765 IPR038420 PapG, carbohydrate-binding domain superfamily Eco28_RS24765 IPR008966 Adhesion domain superfamily Eco28_RS24765 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS24765 IPR005309 PapG, chaperone-binding Eco28_RS24770 IPR005430 P pili tip fibrillum PapF protein Eco28_RS24770 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS24770 IPR008966 Adhesion domain superfamily Eco28_RS24770 IPR000259 Fimbrial-type adhesion domain Eco28_RS24775 IPR008966 Adhesion domain superfamily Eco28_RS24775 IPR000259 Fimbrial-type adhesion domain Eco28_RS24775 IPR004086 P pili tip fibrillum PapE protein, Escherichia coli Eco28_RS24775 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS24780 IPR000259 Fimbrial-type adhesion domain Eco28_RS24780 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS24780 IPR008966 Adhesion domain superfamily Eco28_RS24785 IPR029224 Pilus-assembly complex, chaperone PapJ Eco28_RS24790 IPR016147 Pili assembly chaperone, N-terminal Eco28_RS24790 IPR018046 Pili assembly chaperone, conserved site Eco28_RS24790 IPR013783 Immunoglobulin-like fold Eco28_RS24790 IPR016148 Pili assembly chaperone, C-terminal Eco28_RS24790 IPR008962 PapD-like superfamily Eco28_RS24790 IPR001829 Pili assembly chaperone, bacterial Eco28_RS24790 IPR036316 Pili assembly chaperone, C-terminal domain superfamily Eco28_RS24795 IPR009057 Homeobox-like domain superfamily Eco28_RS24795 IPR001584 Integrase, catalytic core Eco28_RS24795 IPR012337 Ribonuclease H-like superfamily Eco28_RS24795 IPR025948 HTH-like domain Eco28_RS24795 IPR036397 Ribonuclease H superfamily Eco28_RS24795 IPR002514 Transposase IS3/IS911family Eco28_RS24800 IPR008878 Transposase IS66, Orf2 Eco28_RS24805 IPR004291 Transposase, IS66 Eco28_RS24805 IPR024463 Transposase TnpC, homeodomain Eco28_RS24805 IPR039552 Transposase IS66, C-terminal Eco28_RS24805 IPR024474 Zinc-finger binding domain of transposase IS66 Eco28_RS24810 IPR000015 Outer membrane usher protein Eco28_RS24810 IPR018030 Fimbrial membrane usher, conserved site Eco28_RS24810 IPR042186 Outer membrane usher protein FimD, plug domain Eco28_RS24810 IPR025949 PapC-like, C-terminal domain Eco28_RS24810 IPR037224 PapC, N-terminal domain superfamily Eco28_RS24810 IPR025885 PapC, N-terminal domain Eco28_RS24820 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS24820 IPR000259 Fimbrial-type adhesion domain Eco28_RS24820 IPR008966 Adhesion domain superfamily Eco28_RS24825 IPR002575 Aminoglycoside phosphotransferase Eco28_RS24825 IPR011009 Protein kinase-like domain superfamily Eco28_RS24825 IPR024165 Aminoglycoside 3-phosphotransferase Eco28_RS24830 IPR011009 Protein kinase-like domain superfamily Eco28_RS24830 IPR006748 Aminoglycoside/hydroxyurea antibiotic resistance kinase Eco28_RS24840 IPR024165 Aminoglycoside 3-phosphotransferase Eco28_RS24840 IPR011009 Protein kinase-like domain superfamily Eco28_RS24840 IPR002575 Aminoglycoside phosphotransferase Eco28_RS24845 IPR002513 Tn3 transposase DDE domain Eco28_RS24845 IPR025296 Domain of unknown function DUF4158 Eco28_RS24850 IPR006118 Recombinase, conserved site Eco28_RS24850 IPR006119 Resolvase, N-terminal catalytic domain Eco28_RS24850 IPR006120 Resolvase, HTH domain Eco28_RS24850 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily Eco28_RS24850 IPR009057 Homeobox-like domain superfamily Eco28_RS24870 IPR005119 LysR, substrate-binding Eco28_RS24870 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS24870 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS24870 IPR037414 Transcriptional activator protein LysR, PBP2 domain Eco28_RS24870 IPR000847 Transcription regulator HTH, LysR Eco28_RS24875 IPR004445 Sodium/glutamate symport carrier protein GltS Eco28_RS24890 IPR011991 ArsR-like helix-turn-helix domain Eco28_RS24890 IPR001845 HTH ArsR-type DNA-binding domain Eco28_RS24890 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS24890 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS24895 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS24895 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS24895 IPR004111 Tetracycline repressor TetR, C-terminal Eco28_RS24895 IPR009057 Homeobox-like domain superfamily Eco28_RS24895 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Eco28_RS24895 IPR003012 Tetracycline transcriptional regulator, TetR Eco28_RS24900 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG Eco28_RS24900 IPR020846 Major facilitator superfamily domain Eco28_RS24900 IPR011701 Major facilitator superfamily Eco28_RS24900 IPR005829 Sugar transporter, conserved site Eco28_RS24900 IPR036259 MFS transporter superfamily Eco28_RS24905 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Eco28_RS24905 IPR009057 Homeobox-like domain superfamily Eco28_RS24905 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS24910 IPR018062 HTH domain AraC-type, conserved site Eco28_RS24910 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS24910 IPR009057 Homeobox-like domain superfamily Eco28_RS24920 IPR000259 Fimbrial-type adhesion domain Eco28_RS24920 IPR036937 Fimbrial-type adhesion domain superfamily Eco28_RS24920 IPR008966 Adhesion domain superfamily Eco28_RS24925 IPR004356 Adhesin operon regulatory protein Eco28_RS24950 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III Eco28_RS24950 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Eco28_RS24950 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III Eco28_RS24950 IPR005843 Alpha-D-phosphohexomutase, C-terminal Eco28_RS24950 IPR006352 Phosphoglucosamine mutase, bacterial type Eco28_RS24950 IPR005841 Alpha-D-phosphohexomutase superfamily Eco28_RS24950 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily Eco28_RS24950 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II Eco28_RS24955 IPR006390 Dihydropteroate synthase Eco28_RS24955 IPR011005 Dihydropteroate synthase-like Eco28_RS24955 IPR000489 Pterin-binding domain Eco28_RS24970 IPR011051 RmlC-like cupin domain superfamily Eco28_RS24970 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS24970 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily Eco28_RS24970 IPR009057 Homeobox-like domain superfamily Eco28_RS24970 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS24970 IPR018062 HTH domain AraC-type, conserved site Eco28_RS24970 IPR014710 RmlC-like jelly roll fold Eco28_RS24975 IPR019802 Glycoside hydrolase, family 4, conserved site Eco28_RS24975 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal Eco28_RS24975 IPR036291 NAD(P)-binding domain superfamily Eco28_RS24975 IPR022616 Glycosyl hydrolase, family 4, C-terminal Eco28_RS24975 IPR001088 Glycoside hydrolase, family 4 Eco28_RS24980 IPR018043 Sodium:galactoside symporter, conserved site Eco28_RS24980 IPR001927 Sodium:galactoside symporter Eco28_RS24980 IPR036259 MFS transporter superfamily Eco28_RS24980 IPR039672 Lactose permease-like Eco28_RS24985 IPR014509 Uncharacterised conserved protein UCP020606 Eco28_RS24990 IPR020557 Fumarate lyase, conserved site Eco28_RS24990 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain Eco28_RS24990 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain Eco28_RS24990 IPR011167 Iron-dependent fumarate hydratase Eco28_RS24990 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily Eco28_RS24995 IPR004668 Anaerobic c4-dicarboxylate membrane transporter Eco28_RS25010 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS25010 IPR024187 Signal transduction response regulator, citrate/malate metabolism Eco28_RS25010 IPR011006 CheY-like superfamily Eco28_RS25015 IPR039506 SpoOB, alpha-helical domain Eco28_RS25015 IPR013767 PAS fold Eco28_RS25015 IPR000014 PAS domain Eco28_RS25015 IPR029151 Periplasmic sensor-like domain superfamily Eco28_RS25015 IPR035965 PAS domain superfamily Eco28_RS25015 IPR033463 Single cache domain 3 Eco28_RS25015 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS25015 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS25015 IPR005467 Histidine kinase domain Eco28_RS25015 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB Eco28_RS25015 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS25020 IPR010693 Divergent 4Fe-4S mono-cluster Eco28_RS25025 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS25025 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase Eco28_RS25035 IPR022597 Endoribonuclease antitoxin GhoS Eco28_RS25035 IPR038241 Endoribonuclease antitoxin GhoS superfamily Eco28_RS25040 IPR019689 Toxin GhoT/OrtT Eco28_RS25045 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS25045 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal Eco28_RS25045 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type Eco28_RS25045 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II Eco28_RS25045 IPR002313 Lysine-tRNA ligase, class II Eco28_RS25045 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) Eco28_RS25045 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS25050 IPR005279 Dipeptide/tripeptide permease Eco28_RS25050 IPR020846 Major facilitator superfamily domain Eco28_RS25050 IPR036259 MFS transporter superfamily Eco28_RS25050 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site Eco28_RS25050 IPR000109 Proton-dependent oligopeptide transporter family Eco28_RS25055 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS25055 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily Eco28_RS25055 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS25055 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal Eco28_RS25055 IPR011193 Ornithine/lysine/arginine decarboxylase Eco28_RS25055 IPR000310 Orn/Lys/Arg decarboxylase, major domain Eco28_RS25055 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal Eco28_RS25055 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS25060 IPR004754 Amino acid antiporter Eco28_RS25060 IPR002293 Amino acid/polyamine transporter I Eco28_RS25070 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS25070 IPR040970 CadC C-terminal domain 1 Eco28_RS25070 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS25070 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS25070 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS25070 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS25095 IPR009610 CbtA toxin of type IV toxin-antitoxin system Eco28_RS25100 IPR009320 Antitoxin CbeA Eco28_RS25100 IPR038025 Antitoxin CbeA superfamily Eco28_RS25110 IPR009329 Protein of unknown function DUF987 Eco28_RS25115 IPR020891 Uncharacterised protein family UPF0758, conserved site Eco28_RS25115 IPR025657 RadC-like JAB domain Eco28_RS25115 IPR037518 MPN domain Eco28_RS25115 IPR001405 Uncharacterised protein family UPF0758 Eco28_RS25120 IPR042297 Antirestriction domain superfamily Eco28_RS25120 IPR004914 Antirestriction protein Eco28_RS25125 IPR026325 Protein of unknown function DUF932 Eco28_RS25130 IPR009253 Protein of unknown function DUF905 Eco28_RS25130 IPR038612 YkfF-like domain superfamily Eco28_RS25140 IPR006073 GTP binding domain Eco28_RS25140 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25175 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS25175 IPR010917 TonB-dependent receptor, conserved site Eco28_RS25175 IPR039426 Vitamin B12 transporter BtuB-like Eco28_RS25175 IPR010916 TonB box, conserved site Eco28_RS25175 IPR012910 TonB-dependent receptor, plug domain Eco28_RS25175 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS25175 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS25265 IPR009057 Homeobox-like domain superfamily Eco28_RS25265 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS25265 IPR011051 RmlC-like cupin domain superfamily Eco28_RS25265 IPR008917 Transcription factor, Skn-1-like, DNA-binding domain superfamily Eco28_RS25265 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS25265 IPR014710 RmlC-like jelly roll fold Eco28_RS25265 IPR018062 HTH domain AraC-type, conserved site Eco28_RS25270 IPR000310 Orn/Lys/Arg decarboxylase, major domain Eco28_RS25270 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal Eco28_RS25270 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS25270 IPR011193 Ornithine/lysine/arginine decarboxylase Eco28_RS25270 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS25270 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily Eco28_RS25270 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal Eco28_RS25270 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS25275 IPR009057 Homeobox-like domain superfamily Eco28_RS25275 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS25275 IPR018062 HTH domain AraC-type, conserved site Eco28_RS25275 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS25285 IPR002293 Amino acid/polyamine transporter I Eco28_RS25290 IPR012549 Phosphoethanolamine transferase, N-terminal Eco28_RS25290 IPR040423 Phosphoethanolamine transferase Eco28_RS25290 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS25290 IPR000917 Sulfatase, N-terminal Eco28_RS25295 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS25295 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS25295 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS25295 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS25295 IPR011006 CheY-like superfamily Eco28_RS25295 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS25300 IPR005467 Histidine kinase domain Eco28_RS25300 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS25300 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS25300 IPR003660 HAMP domain Eco28_RS25300 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS25300 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS25300 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS25310 IPR004736 MFS transporter, metabolite:H symporter Eco28_RS25310 IPR036292 Proline/betaine transporter ProP, C-terminal Eco28_RS25310 IPR005828 Major facilitator, sugar transporter-like Eco28_RS25310 IPR036259 MFS transporter superfamily Eco28_RS25310 IPR020846 Major facilitator superfamily domain Eco28_RS25310 IPR005829 Sugar transporter, conserved site Eco28_RS25310 IPR015041 Osmosensory transporter coiled coil Eco28_RS25315 IPR025599 YjcZ-like protein Eco28_RS25320 IPR030381 Dynamin-type guanine nucleotide-binding (G) domain Eco28_RS25320 IPR022812 Dynamin superfamily Eco28_RS25320 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25330 IPR013987 PhnA protein, N-terminal Eco28_RS25330 IPR013988 PhnA protein, C-terminal Eco28_RS25330 IPR004624 PhnA protein Eco28_RS25335 IPR028973 PhnB-like Eco28_RS25335 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Eco28_RS25345 IPR017797 Phosphonate ABC transporter, substrate-binding protein Eco28_RS25345 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein Eco28_RS25350 IPR035906 MetI-like superfamily Eco28_RS25350 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS25350 IPR005769 ABC transporter, permease PhnE/PtxC Eco28_RS25355 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Eco28_RS25355 IPR012702 Phosphonate C-P lyase system, transcriptional regulator PhnF Eco28_RS25355 IPR000524 Transcription regulator HTH, GntR Eco28_RS25355 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS25355 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS25355 IPR011663 UbiC transcription regulator-associated Eco28_RS25360 IPR009609 Phosphonate metabolism PhnG Eco28_RS25365 IPR038058 PhnH-like superfamily Eco28_RS25365 IPR008772 Bacterial phosphonate metabolism, PhnH Eco28_RS25370 IPR008773 Phosphonate metabolism protein PhnI Eco28_RS25375 IPR010306 Alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase Eco28_RS25380 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25380 IPR012700 Phosphonate C-P lyase system, PhnK Eco28_RS25380 IPR017871 ABC transporter, conserved site Eco28_RS25380 IPR003439 ABC transporter-like Eco28_RS25380 IPR003593 AAA+ ATPase domain Eco28_RS25385 IPR003593 AAA+ ATPase domain Eco28_RS25385 IPR017871 ABC transporter, conserved site Eco28_RS25385 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25385 IPR012701 Phosphonate C-P lyase system, PhnL Eco28_RS25385 IPR003439 ABC transporter-like Eco28_RS25390 IPR012696 Phosphonate metabolism PhnM Eco28_RS25390 IPR032466 Metal-dependent hydrolase Eco28_RS25390 IPR013108 Amidohydrolase 3 Eco28_RS25390 IPR011059 Metal-dependent hydrolase, composite domain superfamily Eco28_RS25395 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Eco28_RS25395 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN Eco28_RS25395 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25400 IPR000182 GNAT domain Eco28_RS25400 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS25405 IPR035682 Phosphonate metabolism protein, MBL domain Eco28_RS25405 IPR001279 Metallo-beta-lactamase Eco28_RS25405 IPR017693 Phosphonate metabolism protein PhnP Eco28_RS25405 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Eco28_RS25415 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family Eco28_RS25415 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily Eco28_RS25415 IPR004785 Ribose 5-phosphate isomerase B Eco28_RS25420 IPR038536 Alkyl/aryl-sulfatase, dimerisation domain superfamily Eco28_RS25420 IPR029228 Alkyl sulfatase dimerisation domain Eco28_RS25420 IPR001279 Metallo-beta-lactamase Eco28_RS25420 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Eco28_RS25420 IPR036527 SCP2 sterol-binding domain superfamily Eco28_RS25420 IPR029229 Alkyl sulfatase, C-terminal Eco28_RS25425 IPR031381 Uncharacterised protein YtcA Eco28_RS25430 IPR030196 Multidrug resistance protein MdtN Eco28_RS25430 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Eco28_RS25430 IPR005694 Efflux pump membrane protein Eco28_RS25435 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein Eco28_RS25440 IPR003423 Outer membrane efflux protein Eco28_RS25440 IPR010131 RND efflux system, outer membrane lipoprotein, NodT Eco28_RS25450 IPR006597 Sel1-like repeat Eco28_RS25450 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS25455 IPR018107 Sodium:dicarboxylate symporter, conserved site Eco28_RS25455 IPR036458 Sodium:dicarboxylate symporter superfamily Eco28_RS25455 IPR034703 Proton/glutamate-aspartate symporter GltP Eco28_RS25455 IPR033380 Glutamate-aspartate symport protein GltP/GltT Eco28_RS25455 IPR001991 Sodium:dicarboxylate symporter Eco28_RS25465 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS25465 IPR019734 Tetratricopeptide repeat Eco28_RS25465 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS25470 IPR005616 CcmH/CycL/Ccl2/NrfF family Eco28_RS25470 IPR017565 Formate-dependent nitrite reductase complex, subunit NrfF Eco28_RS25470 IPR038297 CcmH/CycL/Ccl2/NrfF domain superfamily Eco28_RS25475 IPR002541 Cytochrome c assembly protein Eco28_RS25475 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal Eco28_RS25475 IPR003568 Cytochrome c-type biogenesis protein CcmF Eco28_RS25475 IPR003570 Cytochrome c-type biogenesis protein NrfE Eco28_RS25475 IPR003567 Cytochrome c-type biogenesis protein Eco28_RS25480 IPR017566 NrfD Eco28_RS25480 IPR005614 NrfD family Eco28_RS25485 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal Eco28_RS25485 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS25485 IPR017567 Cytochrome c nitrite reductase, Fe-S protein Eco28_RS25485 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS25485 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS25490 IPR036280 Multiheme cytochrome superfamily Eco28_RS25490 IPR023155 Cytochrome c-552/4 Eco28_RS25490 IPR010177 Doubled CXXCH motif Eco28_RS25490 IPR011031 Multihaem cytochrome Eco28_RS25490 IPR017564 Cytochrome c nitrite reductase, pentahaem subunit Eco28_RS25495 IPR011031 Multihaem cytochrome Eco28_RS25495 IPR036280 Multiheme cytochrome superfamily Eco28_RS25495 IPR017570 Formate-dependent cytochrome c nitrite reductase, c552 subunit Eco28_RS25495 IPR003321 Cytochrome c552 Eco28_RS25505 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain Eco28_RS25505 IPR025110 AMP-binding enzyme, C-terminal domain Eco28_RS25505 IPR020845 AMP-binding, conserved site Eco28_RS25505 IPR000873 AMP-dependent synthetase/ligase Eco28_RS25505 IPR042099 AMP-dependent synthetase-like superfamily Eco28_RS25505 IPR011904 Acetate-CoA ligase Eco28_RS25510 IPR007436 Protein of unknown function DUF485 Eco28_RS25515 IPR014083 Cation/acetate symporter ActP Eco28_RS25515 IPR018212 Sodium/solute symporter, conserved site Eco28_RS25515 IPR038377 Sodium/glucose symporter superfamily Eco28_RS25515 IPR001734 Sodium/solute symporter Eco28_RS25520 IPR001646 Pentapeptide repeat Eco28_RS25525 IPR038770 Sodium/solute symporter superfamily Eco28_RS25525 IPR006153 Cation/H+ exchanger Eco28_RS25525 IPR018422 Cation/H+ exchanger, CPA1 family Eco28_RS25525 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria Eco28_RS25530 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS25550 IPR015358 Transcription regulator MerR, DNA binding Eco28_RS25550 IPR010211 Redox-sensitive transcriptional activator SoxR Eco28_RS25550 IPR000551 MerR-type HTH domain Eco28_RS25550 IPR009061 Putative DNA-binding domain superfamily Eco28_RS25555 IPR018062 HTH domain AraC-type, conserved site Eco28_RS25555 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS25555 IPR009057 Homeobox-like domain superfamily Eco28_RS25555 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS25560 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain Eco28_RS25560 IPR035919 EAL domain superfamily Eco28_RS25560 IPR001633 EAL domain Eco28_RS25570 IPR016958 Uncharacterised conserved protein UCP030798 Eco28_RS25575 IPR011344 Single-stranded DNA-binding protein Eco28_RS25575 IPR000424 Primosome PriB/single-strand DNA-binding Eco28_RS25575 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS25580 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25580 IPR017871 ABC transporter, conserved site Eco28_RS25580 IPR041552 UvrA DNA-binding domain Eco28_RS25580 IPR041102 UvrA, interaction domain Eco28_RS25580 IPR004602 UvrABC system subunit A Eco28_RS25580 IPR003439 ABC transporter-like Eco28_RS25585 IPR007351 Uncharacterised protein YjbR Eco28_RS25585 IPR038056 YjbR-like superfamily Eco28_RS25590 IPR001602 Uncharacterised protein family UPF0047 Eco28_RS25590 IPR035917 YjbQ-like superfamily Eco28_RS25595 IPR010025 HAD-superfamily phosphatase, subfamily IIIB, AphA Eco28_RS25595 IPR005519 Acid phosphatase, class B-like Eco28_RS25595 IPR023214 HAD superfamily Eco28_RS25595 IPR036412 HAD-like superfamily Eco28_RS25605 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS25605 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS25605 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS25605 IPR000796 Aspartate/other aminotransferase Eco28_RS25605 IPR004839 Aminotransferase, class I/classII Eco28_RS25605 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site Eco28_RS25610 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal Eco28_RS25610 IPR011079 Alanine racemase, C-terminal Eco28_RS25610 IPR029066 PLP-binding barrel Eco28_RS25610 IPR001608 Alanine racemase, N-terminal Eco28_RS25610 IPR000821 Alanine racemase Eco28_RS25610 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site Eco28_RS25615 IPR003593 AAA+ ATPase domain Eco28_RS25615 IPR007694 DNA helicase, DnaB-like, C-terminal Eco28_RS25615 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily Eco28_RS25615 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25615 IPR007692 DNA helicase, DnaB type Eco28_RS25615 IPR007693 DNA helicase, DnaB-like, N-terminal Eco28_RS25615 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Eco28_RS25620 IPR036291 NAD(P)-binding domain superfamily Eco28_RS25620 IPR020843 Polyketide synthase, enoylreductase domain Eco28_RS25620 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS25620 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS25620 IPR011032 GroES-like superfamily Eco28_RS25620 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site Eco28_RS25625 IPR014318 Phage shock protein, PspG Eco28_RS25630 IPR004653 tRNA-dihydrouridine(20/20a) synthase Eco28_RS25630 IPR013785 Aldolase-type TIM barrel Eco28_RS25630 IPR035587 DUS-like, FMN-binding domain Eco28_RS25630 IPR018517 tRNA-dihydrouridine synthase, conserved site Eco28_RS25630 IPR001269 tRNA-dihydrouridine synthase Eco28_RS25635 IPR002686 Transposase IS200-like Eco28_RS25635 IPR036515 Transposase IS200-like superfamily Eco28_RS25645 IPR002686 Transposase IS200-like Eco28_RS25645 IPR036515 Transposase IS200-like superfamily Eco28_RS25655 IPR020404 Protein of unknown function DUF2713 Eco28_RS25660 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS25660 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS25660 IPR002481 Ferric-uptake regulator Eco28_RS25665 IPR026042 Stress response protein YjbJ Eco28_RS25665 IPR008462 CsbD-like domain Eco28_RS25665 IPR036629 YjbJ superfamily Eco28_RS25670 IPR002528 Multi antimicrobial extrusion protein Eco28_RS25675 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS25675 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS25675 IPR015927 Peptidase S24/S26A/S26B/S26C Eco28_RS25675 IPR006200 Transcription regulator LexA Eco28_RS25675 IPR039418 LexA-like Eco28_RS25675 IPR006199 LexA repressor, DNA-binding domain Eco28_RS25675 IPR006197 Peptidase S24, LexA-like Eco28_RS25675 IPR036286 LexA/Signal peptidase-like superfamily Eco28_RS25680 IPR036945 Diacylglycerol kinase (DAGK) superfamily Eco28_RS25680 IPR000829 DAGK family Eco28_RS25680 IPR033718 Diacylglycerol kinase, prokaryotic Eco28_RS25685 IPR002123 Phospholipid/glycerol acyltransferase Eco28_RS25685 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB Eco28_RS25685 IPR041728 GPAT/DHAPAT, acyltransferase domain Eco28_RS25685 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase Eco28_RS25690 IPR039653 Prenyltransferase Eco28_RS25690 IPR006370 4-hydroxybenzoate polyprenyltransferase-like Eco28_RS25690 IPR000537 UbiA prenyltransferase family Eco28_RS25690 IPR030470 UbiA prenyltransferase conserved site Eco28_RS25695 IPR007440 Chorismate--pyruvate lyase Eco28_RS25695 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Eco28_RS25705 IPR001646 Pentapeptide repeat Eco28_RS25705 IPR025726 E3 ubiquitin ligase SopA-like central domain Eco28_RS25710 IPR010794 Maltose operon periplasmic Eco28_RS25715 IPR003192 Porin, LamB-type Eco28_RS25715 IPR023738 Maltoporin Eco28_RS25715 IPR036998 Porin, LamB-type superfamily Eco28_RS25720 IPR015855 ABC transporter, maltose/maltodextrin import, MalK Eco28_RS25720 IPR017871 ABC transporter, conserved site Eco28_RS25720 IPR003439 ABC transporter-like Eco28_RS25720 IPR003593 AAA+ ATPase domain Eco28_RS25720 IPR008995 Molybdate/tungstate binding, C-terminal Eco28_RS25720 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25720 IPR040582 MalK, OB fold domain Eco28_RS25730 IPR006061 Solute-binding family 1, conserved site Eco28_RS25730 IPR006059 Bacterial extracellular solute-binding protein Eco28_RS25730 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein Eco28_RS25735 IPR035277 MalF, N-terminal Eco28_RS25735 IPR035906 MetI-like superfamily Eco28_RS25735 IPR029345 Maltose transport system permease protein MalF, P2 domain Eco28_RS25735 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS25735 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like Eco28_RS25740 IPR035906 MetI-like superfamily Eco28_RS25740 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS25750 IPR020846 Major facilitator superfamily domain Eco28_RS25750 IPR005828 Major facilitator, sugar transporter-like Eco28_RS25750 IPR003663 Sugar/inositol transporter Eco28_RS25750 IPR005829 Sugar transporter, conserved site Eco28_RS25750 IPR036259 MFS transporter superfamily Eco28_RS25755 IPR020948 Phosphate-starvation-induced PsiE-like Eco28_RS25755 IPR009315 Phosphate-starvation-induced PsiE Eco28_RS25760 IPR031382 Uncharacterised protein YjbT Eco28_RS25765 IPR010344 Exopolysaccharide biosynthesis protein YbjH Eco28_RS25770 IPR010425 Domain of unknown function DUF1017 Eco28_RS25775 IPR021308 Group 4 capsule polysaccharide formation lipoprotein GfcB Eco28_RS25775 IPR023373 YmcC-like superfamily Eco28_RS25780 IPR025858 Exopolysaccharide production protein YjbE Eco28_RS25790 IPR018189 Phosphoglucose isomerase, conserved site Eco28_RS25790 IPR035476 Phosphoglucose isomerase, SIS domain 1 Eco28_RS25790 IPR001672 Phosphoglucose isomerase (PGI) Eco28_RS25790 IPR035482 Phosphoglucose isomerase, SIS domain 2 Eco28_RS25790 IPR023096 Phosphoglucose isomerase, C-terminal Eco28_RS25805 IPR041745 Lysine-sensitive aspartokinase 3, N-terminal catalytic domain Eco28_RS25805 IPR005260 Aspartate kinase, monofunctional class Eco28_RS25805 IPR001341 Aspartate kinase Eco28_RS25805 IPR018042 Aspartate kinase, conserved site Eco28_RS25805 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS25805 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS25805 IPR002912 ACT domain Eco28_RS25810 IPR010488 Zeta toxin domain Eco28_RS25810 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25815 IPR018775 RNA repair pathway DNA polymerase beta Eco28_RS25835 IPR023214 HAD superfamily Eco28_RS25835 IPR006379 HAD-superfamily hydrolase, subfamily IIB Eco28_RS25835 IPR036412 HAD-like superfamily Eco28_RS25835 IPR000150 Cof family Eco28_RS25840 IPR001034 DeoR-type HTH domain Eco28_RS25840 IPR011991 ArsR-like helix-turn-helix domain Eco28_RS25840 IPR014036 DeoR C-terminal sensor domain Eco28_RS25840 IPR037171 NagB/RpiA transferase-like Eco28_RS25840 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS25840 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS25840 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS25845 IPR020317 Uncharacterised protein family YjbD Eco28_RS25850 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain Eco28_RS25850 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site Eco28_RS25850 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F Eco28_RS25850 IPR006145 Pseudouridine synthase, RsuA/RluA Eco28_RS25850 IPR036986 RNA-binding S4 domain superfamily Eco28_RS25850 IPR020103 Pseudouridine synthase, catalytic domain superfamily Eco28_RS25850 IPR002942 RNA-binding S4 domain Eco28_RS25860 IPR011991 ArsR-like helix-turn-helix domain Eco28_RS25860 IPR007324 Sugar-binding domain, putative Eco28_RS25860 IPR009057 Homeobox-like domain superfamily Eco28_RS25860 IPR025246 Transposase IS30-like HTH domain Eco28_RS25860 IPR037171 NagB/RpiA transferase-like Eco28_RS25865 IPR002347 Short-chain dehydrogenase/reductase SDR Eco28_RS25865 IPR036291 NAD(P)-binding domain superfamily Eco28_RS25865 IPR020904 Short-chain dehydrogenase/reductase, conserved site Eco28_RS25870 IPR033887 PTS system mannose/sorbose specific IIA subunit Eco28_RS25870 IPR004701 Phosphotransferase system, mannose-type IIA component Eco28_RS25870 IPR013789 Phosphotransferase system, mannose family IIA component Eco28_RS25870 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily Eco28_RS25875 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup Eco28_RS25875 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily Eco28_RS25875 IPR004720 Phosphotransferase system, sorbose subfamily IIB component Eco28_RS25880 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit Eco28_RS25885 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component Eco28_RS25890 IPR036291 NAD(P)-binding domain superfamily Eco28_RS25890 IPR013149 Alcohol dehydrogenase, C-terminal Eco28_RS25890 IPR011032 GroES-like superfamily Eco28_RS25890 IPR013154 Alcohol dehydrogenase, N-terminal Eco28_RS25895 IPR023172 Peptidase S51, dipeptidase E Eco28_RS25895 IPR005320 Peptidase S51 Eco28_RS25895 IPR029062 Class I glutamine amidotransferase-like Eco28_RS25900 IPR003841 Sodium-dependent phosphate transport protein Eco28_RS25900 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein Eco28_RS25905 IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily Eco28_RS25905 IPR006158 Cobalamin (vitamin B12)-binding domain Eco28_RS25905 IPR036724 Cobalamin-binding domain superfamily Eco28_RS25905 IPR011005 Dihydropteroate synthase-like Eco28_RS25905 IPR003726 Homocysteine-binding domain Eco28_RS25905 IPR033706 Methionine synthase, B12-binding domain Eco28_RS25905 IPR011822 Cobalamin-dependent methionine synthase Eco28_RS25905 IPR036594 Methionine synthase domain Eco28_RS25905 IPR000489 Pterin-binding domain Eco28_RS25905 IPR004223 Vitamin B12-dependent methionine synthase, activation domain Eco28_RS25905 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain Eco28_RS25905 IPR036589 Homocysteine-binding domain superfamily Eco28_RS25910 IPR029016 GAF-like domain superfamily Eco28_RS25910 IPR014757 Transcription regulator IclR, C-terminal Eco28_RS25910 IPR005471 Transcription regulator IclR, N-terminal Eco28_RS25910 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS25910 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS25915 IPR002110 Ankyrin repeat Eco28_RS25915 IPR036770 Ankyrin repeat-containing domain superfamily Eco28_RS25915 IPR012927 ShET2 enterotoxin, N-terminal Eco28_RS25920 IPR010452 Isocitrate dehydrogenase kinasephosphatase Eco28_RS25925 IPR039556 ICL/PEPM domain Eco28_RS25925 IPR006254 Isocitrate lyase Eco28_RS25925 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site Eco28_RS25925 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS25925 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS25930 IPR019830 Malate synthase, conserved site Eco28_RS25930 IPR001465 Malate synthase Eco28_RS25930 IPR006252 Malate synthase A Eco28_RS25930 IPR011076 Malate synthase-like superfamily Eco28_RS25935 IPR005697 Homoserine O-succinyltransferase MetA Eco28_RS25935 IPR033752 MetA family Eco28_RS25935 IPR029062 Class I glutamine amidotransferase-like Eco28_RS25940 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS25940 IPR000182 GNAT domain Eco28_RS25975 IPR002695 Bifunctional purine biosynthesis protein PurH-like Eco28_RS25975 IPR016193 Cytidine deaminase-like Eco28_RS25975 IPR036914 Methylglyoxal synthase-like domain superfamily Eco28_RS25975 IPR011607 Methylglyoxal synthase-like domain Eco28_RS25975 IPR024051 AICAR transformylase, duplicated domain superfamily Eco28_RS25980 IPR020560 Phosphoribosylglycinamide synthetase, C-domain Eco28_RS25980 IPR011761 ATP-grasp fold Eco28_RS25980 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily Eco28_RS25980 IPR020559 Phosphoribosylglycinamide synthetase, conserved site Eco28_RS25980 IPR011054 Rudiment single hybrid motif Eco28_RS25980 IPR016185 Pre-ATP-grasp domain superfamily Eco28_RS25980 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Eco28_RS25980 IPR000115 Phosphoribosylglycinamide synthetase Eco28_RS25980 IPR013815 ATP-grasp fold, subdomain 1 Eco28_RS25980 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal Eco28_RS25985 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS25985 IPR002197 DNA binding HTH domain, Fis-type Eco28_RS25985 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS25985 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS25985 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS25985 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS25985 IPR003593 AAA+ ATPase domain Eco28_RS25985 IPR011006 CheY-like superfamily Eco28_RS25985 IPR009057 Homeobox-like domain superfamily Eco28_RS25985 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS25990 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS25990 IPR005467 Histidine kinase domain Eco28_RS25990 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS25990 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS25990 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS25990 IPR029151 Periplasmic sensor-like domain superfamily Eco28_RS25990 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS26000 IPR025961 Heavy-metal resistance protein Eco28_RS26005 IPR016500 Uncharacterised conserved protein UCP006993 Eco28_RS26005 IPR010858 Protein of unknown function DUF1481 Eco28_RS26010 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily Eco28_RS26010 IPR000119 Histone-like DNA-binding protein Eco28_RS26010 IPR020816 Histone-like DNA-binding protein, conserved site Eco28_RS26015 IPR023381 YP001051499.1-like domain superfamily Eco28_RS26015 IPR007338 Protein of unknown function DUF416 Eco28_RS26020 IPR007581 Endonuclease V Eco28_RS26025 IPR038071 UROD/MetE-like superfamily Eco28_RS26025 IPR000257 Uroporphyrinogen decarboxylase (URO-D) Eco28_RS26025 IPR006361 Uroporphyrinogen decarboxylase HemE Eco28_RS26030 IPR015376 Zinc ribbon, NADH pyrophosphatase Eco28_RS26030 IPR000086 NUDIX hydrolase domain Eco28_RS26030 IPR020084 NUDIX hydrolase, conserved site Eco28_RS26030 IPR015797 NUDIX hydrolase-like domain superfamily Eco28_RS26030 IPR022925 NADH pyrophosphatase NudC Eco28_RS26035 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Eco28_RS26035 IPR023785 Regulator of RNA polymerase sigma(70) subunit, Rsd Eco28_RS26035 IPR038309 Rsd/AlgQ superfamily Eco28_RS26040 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B Eco28_RS26040 IPR038521 ThiC/Bza superfamily Eco28_RS26040 IPR025747 ThiC-associated domain Eco28_RS26040 IPR037509 Phosphomethylpyrimidine synthase Eco28_RS26045 IPR034291 Thiamine phosphate synthase Eco28_RS26045 IPR022998 Thiamine phosphate synthase/TenI Eco28_RS26045 IPR013785 Aldolase-type TIM barrel Eco28_RS26045 IPR036206 Thiamin phosphate synthase superfamily Eco28_RS26050 IPR035985 Ubiquitin-activating enzyme Eco28_RS26050 IPR000594 THIF-type NAD/FAD binding fold Eco28_RS26050 IPR012731 Thiazole biosynthesis adenylyltransferase ThiF Eco28_RS26055 IPR012675 Beta-grasp domain superfamily Eco28_RS26055 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Eco28_RS26055 IPR010035 ThiS, thiamine-biosynthesis Eco28_RS26055 IPR003749 Sulfur carrier ThiS/MoaD-like Eco28_RS26060 IPR013785 Aldolase-type TIM barrel Eco28_RS26060 IPR008867 Thiazole synthase Eco28_RS26060 IPR033983 Thiazole synthase ThiG Eco28_RS26065 IPR013785 Aldolase-type TIM barrel Eco28_RS26065 IPR010722 Biotin and thiamin synthesis-associated domain Eco28_RS26065 IPR007197 Radical SAM Eco28_RS26065 IPR034428 ThiH/NocL/HydG-like Eco28_RS26065 IPR012726 Thiazole biosynthesis ThiH Eco28_RS26075 IPR006592 RNA polymerase, N-terminal Eco28_RS26075 IPR007066 RNA polymerase Rpb1, domain 3 Eco28_RS26075 IPR000722 RNA polymerase, alpha subunit Eco28_RS26075 IPR038120 RNA polymerase Rpb1, funnel domain superfamily Eco28_RS26075 IPR007081 RNA polymerase Rpb1, domain 5 Eco28_RS26075 IPR007083 RNA polymerase Rpb1, domain 4 Eco28_RS26075 IPR042102 RNA polymerase Rpb1, domain 3 superfamily Eco28_RS26075 IPR007080 RNA polymerase Rpb1, domain 1 Eco28_RS26075 IPR012754 DNA-directed RNA polymerase, subunit beta-prime Eco28_RS26080 IPR014724 RNA polymerase Rpb2, OB-fold Eco28_RS26080 IPR037034 RNA polymerase Rpb2, domain 2 superfamily Eco28_RS26080 IPR007642 RNA polymerase Rpb2, domain 2 Eco28_RS26080 IPR007645 RNA polymerase Rpb2, domain 3 Eco28_RS26080 IPR015712 DNA-directed RNA polymerase, subunit 2 Eco28_RS26080 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type Eco28_RS26080 IPR007644 RNA polymerase, beta subunit, protrusion Eco28_RS26080 IPR007121 RNA polymerase, beta subunit, conserved site Eco28_RS26080 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain Eco28_RS26080 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily Eco28_RS26080 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain Eco28_RS26080 IPR007641 RNA polymerase Rpb2, domain 7 Eco28_RS26085 IPR008932 Ribosomal protein L7/L12, oligomerisation Eco28_RS26085 IPR000206 Ribosomal protein L7/L12 Eco28_RS26085 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Eco28_RS26085 IPR013823 Ribosomal protein L7/L12, C-terminal Eco28_RS26085 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily Eco28_RS26090 IPR002363 Ribosomal protein L10, eubacterial, conserved site Eco28_RS26090 IPR001790 Ribosomal protein L10P Eco28_RS26090 IPR022973 Ribosomal protein L10 Eco28_RS26100 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein Eco28_RS26100 IPR005878 Ribosomal protein L1, bacterial-type Eco28_RS26100 IPR023673 Ribosomal protein L1, conserved site Eco28_RS26100 IPR023674 Ribosomal protein L1-like Eco28_RS26100 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich Eco28_RS26100 IPR002143 Ribosomal protein L1 Eco28_RS26105 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Eco28_RS26105 IPR020783 Ribosomal protein L11, C-terminal Eco28_RS26105 IPR036769 Ribosomal protein L11, C-terminal domain superfamily Eco28_RS26105 IPR020785 Ribosomal protein L11, conserved site Eco28_RS26105 IPR000911 Ribosomal protein L11/L12 Eco28_RS26105 IPR020784 Ribosomal protein L11, N-terminal Eco28_RS26105 IPR006519 Ribosomal protein L11, bacterial-type Eco28_RS26110 IPR008991 Translation protein SH3-like domain superfamily Eco28_RS26110 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site Eco28_RS26110 IPR001062 Transcription antitermination protein, NusG Eco28_RS26110 IPR014722 Ribosomal protein L2, domain 2 Eco28_RS26110 IPR005824 KOW Eco28_RS26110 IPR036735 NusG, N-terminal domain superfamily Eco28_RS26110 IPR006645 NusG, N-terminal Eco28_RS26115 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit Eco28_RS26115 IPR005807 SecE subunit of protein translocation complex, bacterial-like Eco28_RS26115 IPR038379 SecE superfamily Eco28_RS26120 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Eco28_RS26120 IPR004161 Translation elongation factor EFTu-like, domain 2 Eco28_RS26120 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS26120 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle Eco28_RS26120 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS26120 IPR031157 Tr-type G domain, conserved site Eco28_RS26120 IPR033720 Elongation factor Tu, domain 2 Eco28_RS26120 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain Eco28_RS26120 IPR005225 Small GTP-binding protein domain Eco28_RS26120 IPR000795 Transcription factor, GTP-binding domain Eco28_RS26120 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Eco28_RS26155 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS26155 IPR006083 Phosphoribulokinase/uridine kinase Eco28_RS26155 IPR004566 Pantothenate kinase Eco28_RS26160 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS26160 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS26160 IPR030855 Bifunctional ligase/repressor BirA Eco28_RS26160 IPR004408 Biotin--acetyl-CoA-carboxylase ligase Eco28_RS26160 IPR004409 Biotin operon repressor, helix-turn-helix domain Eco28_RS26160 IPR003142 Biotin protein ligase, C-terminal Eco28_RS26160 IPR008988 Transcriptional repressor, C-terminal Eco28_RS26160 IPR013196 Helix-turn-helix, type 11 Eco28_RS26160 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain Eco28_RS26165 IPR036318 FAD-binding, type PCMH-like superfamily Eco28_RS26165 IPR016166 FAD-binding domain, PCMH-type Eco28_RS26165 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal Eco28_RS26165 IPR016167 FAD-binding, type PCMH, subdomain 1 Eco28_RS26165 IPR016169 FAD-binding, type PCMH, subdomain 2 Eco28_RS26165 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase Eco28_RS26165 IPR006094 FAD linked oxidase, N-terminal Eco28_RS26165 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily Eco28_RS26195 IPR015942 Asp/Glu/hydantoin racemase Eco28_RS26195 IPR018187 Asp/Glu racemase, active site 1 Eco28_RS26195 IPR033134 Asp/Glu racemase, active site 2 Eco28_RS26195 IPR004391 Glutamate racemase Eco28_RS26195 IPR001920 Asp/Glu racemase Eco28_RS26200 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Eco28_RS26200 IPR010101 TonB-dependent vitamin B12 transporter BtuB Eco28_RS26200 IPR039426 Vitamin B12 transporter BtuB-like Eco28_RS26200 IPR012910 TonB-dependent receptor, plug domain Eco28_RS26200 IPR037066 TonB-dependent receptor, plug domain superfamily Eco28_RS26200 IPR000531 TonB-dependent receptor-like, beta-barrel Eco28_RS26200 IPR010917 TonB-dependent receptor, conserved site Eco28_RS26200 IPR010916 TonB box, conserved site Eco28_RS26205 IPR010280 (Uracil-5)-methyltransferase family Eco28_RS26205 IPR030391 RNA methyltransferase TrmA, conserved site Eco28_RS26205 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA Eco28_RS26205 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS26205 IPR030390 RNA methyltransferase TrmA, active site Eco28_RS26210 IPR009867 Protein of unknown function DUF1422 Eco28_RS26215 IPR023764 Transcriptional repressor HTH, FabR Eco28_RS26215 IPR001647 DNA-binding HTH domain, TetR-type Eco28_RS26215 IPR009057 Homeobox-like domain superfamily Eco28_RS26220 IPR020846 Major facilitator superfamily domain Eco28_RS26220 IPR036259 MFS transporter superfamily Eco28_RS26220 IPR005829 Sugar transporter, conserved site Eco28_RS26220 IPR011701 Major facilitator superfamily Eco28_RS26225 IPR036264 Bacterial exopeptidase dimerisation domain Eco28_RS26225 IPR002933 Peptidase M20 Eco28_RS26225 IPR011650 Peptidase M20, dimerisation domain Eco28_RS26225 IPR017439 Amidohydrolase Eco28_RS26230 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS26230 IPR023753 FAD/NAD(P)-binding domain Eco28_RS26230 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily Eco28_RS26230 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I Eco28_RS26230 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Eco28_RS26230 IPR022962 Soluble pyridine nucleotide transhydrogenase Eco28_RS26235 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS26235 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS26235 IPR000847 Transcription regulator HTH, LysR Eco28_RS26235 IPR005119 LysR, substrate-binding Eco28_RS26240 IPR022761 Fumarate lyase, N-terminal Eco28_RS26240 IPR029419 Argininosuccinate lyase, C-terminal Eco28_RS26240 IPR009049 Argininosuccinate lyase Eco28_RS26240 IPR008948 L-Aspartase-like Eco28_RS26240 IPR024083 Fumarase/histidase, N-terminal Eco28_RS26240 IPR020557 Fumarate lyase, conserved site Eco28_RS26240 IPR000362 Fumarate lyase family Eco28_RS26245 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS26245 IPR004662 Acetylglutamate kinase family Eco28_RS26245 IPR037528 Acetylglutamate kinase ArgB Eco28_RS26245 IPR041731 N-Acetyl-L-glutamate kinase, noncyclic Eco28_RS26245 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS26250 IPR036291 NAD(P)-binding domain superfamily Eco28_RS26250 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 Eco28_RS26250 IPR012280 Semialdehyde dehydrogenase, dimerisation domain Eco28_RS26250 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site Eco28_RS26250 IPR000534 Semialdehyde dehydrogenase, NAD-binding Eco28_RS26255 IPR010169 Acetylornithine deacetylase ArgE Eco28_RS26255 IPR011650 Peptidase M20, dimerisation domain Eco28_RS26255 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site Eco28_RS26255 IPR036264 Bacterial exopeptidase dimerisation domain Eco28_RS26255 IPR002933 Peptidase M20 Eco28_RS26260 IPR021135 Phosphoenolpyruvate carboxylase Eco28_RS26260 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS26260 IPR033129 Phosphoenolpyruvate carboxylase, His active site Eco28_RS26260 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site Eco28_RS26260 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type Eco28_RS26265 IPR000917 Sulfatase, N-terminal Eco28_RS26265 IPR040423 Phosphoethanolamine transferase Eco28_RS26265 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS26270 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS26270 IPR018062 HTH domain AraC-type, conserved site Eco28_RS26270 IPR009057 Homeobox-like domain superfamily Eco28_RS26270 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS26275 IPR013011 Phosphotransferase system, EIIB component, type 2 Eco28_RS26275 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS26275 IPR036095 PTS system IIB component-like superfamily Eco28_RS26275 IPR003353 Phosphotransferase system, fructose-specific IIB subunit Eco28_RS26280 IPR007197 Radical SAM Eco28_RS26280 IPR012839 Organic radical enzyme activase Eco28_RS26280 IPR034457 Organic radical-activating enzymes Eco28_RS26280 IPR040074 BssD/PflA/YjjW Eco28_RS26280 IPR013785 Aldolase-type TIM barrel Eco28_RS26280 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS26280 IPR001989 Radical-activating enzyme, conserved site Eco28_RS26285 IPR019777 Formate C-acetyltransferase glycine radical, conserved site Eco28_RS26285 IPR001150 Glycine radical domain Eco28_RS26285 IPR010098 Glycyl radical enzyme, PFL2/glycerol dehydratase family Eco28_RS26285 IPR004184 Pyruvate formate lyase domain Eco28_RS26290 IPR003353 Phosphotransferase system, fructose-specific IIB subunit Eco28_RS26290 IPR003501 Phosphotransferase system, EIIB component, type 2/3 Eco28_RS26290 IPR013011 Phosphotransferase system, EIIB component, type 2 Eco28_RS26290 IPR036095 PTS system IIB component-like superfamily Eco28_RS26295 IPR013014 Phosphotransferase system, EIIC component, type 2 Eco28_RS26295 IPR006327 Phosphotransferase system, fructose IIC component Eco28_RS26300 IPR036637 Phosphohistidine domain superfamily Eco28_RS26300 IPR023151 PEP-utilising enzyme, conserved site Eco28_RS26300 IPR002178 PTS EIIA type-2 domain Eco28_RS26300 IPR006318 Phosphotransferase system, enzyme I-like Eco28_RS26300 IPR036618 PtsI, HPr-binding domain superfamily Eco28_RS26300 IPR016152 Phosphotransferase/anion transporter Eco28_RS26300 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily Eco28_RS26300 IPR040442 Pyruvate kinase-like domain superfamily Eco28_RS26300 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site Eco28_RS26300 IPR008731 Phosphotransferase system, enzyme I N-terminal Eco28_RS26300 IPR000121 PEP-utilising enzyme, C-terminal Eco28_RS26300 IPR018274 PEP-utilising enzyme, active site Eco28_RS26300 IPR008279 PEP-utilising enzyme, mobile domain Eco28_RS26300 IPR035895 HPr-like superfamily Eco28_RS26300 IPR000032 Phosphocarrier protein HPr-like Eco28_RS26305 IPR023001 Fructose-6-phosphate aldolase Eco28_RS26305 IPR013785 Aldolase-type TIM barrel Eco28_RS26305 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase Eco28_RS26305 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial Eco28_RS26305 IPR001585 Transaldolase/Fructose-6-phosphate aldolase Eco28_RS26305 IPR018225 Transaldolase, active site Eco28_RS26310 IPR018211 Alcohol dehydrogenase, iron-type, conserved site Eco28_RS26310 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA Eco28_RS26310 IPR016205 Glycerol dehydrogenase Eco28_RS26315 IPR009706 Protein of unknown function DUF1287 Eco28_RS26320 IPR000620 EamA domain Eco28_RS26325 IPR010255 Haem peroxidase superfamily Eco28_RS26325 IPR019794 Peroxidase, active site Eco28_RS26325 IPR019793 Peroxidases heam-ligand binding site Eco28_RS26325 IPR002016 Haem peroxidase Eco28_RS26325 IPR000763 Catalase-peroxidase haem Eco28_RS26330 IPR029041 FAD-linked oxidoreductase-like Eco28_RS26330 IPR003171 Methylenetetrahydrofolate reductase Eco28_RS26330 IPR004620 5,10-methylenetetrahydrofolate reductase Eco28_RS26340 IPR036291 NAD(P)-binding domain superfamily Eco28_RS26340 IPR019811 Homoserine dehydrogenase, conserved site Eco28_RS26340 IPR001342 Homoserine dehydrogenase, catalytic Eco28_RS26340 IPR011147 Bifunctional aspartokinase/homoserine dehydrogenase I Eco28_RS26340 IPR018042 Aspartate kinase, conserved site Eco28_RS26340 IPR001341 Aspartate kinase Eco28_RS26340 IPR036393 Acetylglutamate kinase-like superfamily Eco28_RS26340 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding Eco28_RS26340 IPR001048 Aspartate/glutamate/uridylate kinase Eco28_RS26340 IPR041743 Bifunctional aspartokinase/homoserine dehydrogenase, N-terminal catalytic domain Eco28_RS26345 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS26345 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS26345 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS26345 IPR011821 O-succinylhomoserine (thiol)-lyase Eco28_RS26345 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme Eco28_RS26355 IPR010985 Ribbon-helix-helix Eco28_RS26355 IPR023453 Methionine repressor MetJ domain superfamily Eco28_RS26355 IPR002084 Methionine repressor MetJ Eco28_RS26360 IPR038765 Papain-like cysteine peptidase superfamily Eco28_RS26360 IPR024453 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Eco28_RS26365 IPR027491 Ribosomal protein L31 type A Eco28_RS26365 IPR002150 Ribosomal protein L31 Eco28_RS26365 IPR034704 L28p-like Eco28_RS26365 IPR042105 Ribosomal protein L31 superfamily Eco28_RS26370 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain Eco28_RS26370 IPR011545 DEAD/DEAH box helicase domain Eco28_RS26370 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS26370 IPR001650 Helicase, C-terminal Eco28_RS26370 IPR005259 Primosomal protein N' Eco28_RS26370 IPR041222 Primosomal protein N', 3' DNA-binding domain Eco28_RS26370 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily Eco28_RS26370 IPR041236 Primosomal protein N, C-terminal domain Eco28_RS26370 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS26375 IPR028082 Periplasmic binding protein-like I Eco28_RS26375 IPR000843 LacI-type HTH domain Eco28_RS26375 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS26380 IPR011930 Cell division protein FtsN Eco28_RS26380 IPR036680 Sporulation-like domain superfamily Eco28_RS26380 IPR007730 Sporulation-like domain Eco28_RS26385 IPR022281 ATP-dependent protease, HslV subunit Eco28_RS26385 IPR023333 Proteasome B-type subunit Eco28_RS26385 IPR001353 Proteasome, subunit alpha/beta Eco28_RS26385 IPR029055 Nucleophile aminohydrolases, N-terminal Eco28_RS26390 IPR003593 AAA+ ATPase domain Eco28_RS26390 IPR003959 ATPase, AAA-type, core Eco28_RS26390 IPR019489 Clp ATPase, C-terminal Eco28_RS26390 IPR004491 Heat shock protein HslU Eco28_RS26390 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS26395 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase Eco28_RS26395 IPR000537 UbiA prenyltransferase family Eco28_RS26395 IPR026046 UbiA prenyltransferase domain containing protein 1 Eco28_RS26400 IPR010203 Regulator of ribonuclease activity A Eco28_RS26400 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Eco28_RS26400 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Eco28_RS26400 IPR014339 Regulator of ribonuclease activity A, gammaproteobacteria Eco28_RS26415 IPR009252 Cell division protein ZapB Eco28_RS26420 IPR023271 Aquaporin-like Eco28_RS26420 IPR000425 Major intrinsic protein Eco28_RS26420 IPR022357 Major intrinsic protein, conserved site Eco28_RS26425 IPR018484 Carbohydrate kinase, FGGY, N-terminal Eco28_RS26425 IPR000577 Carbohydrate kinase, FGGY Eco28_RS26425 IPR005999 Glycerol kinase Eco28_RS26425 IPR018483 Carbohydrate kinase, FGGY, conserved site Eco28_RS26425 IPR018485 Carbohydrate kinase, FGGY, C-terminal Eco28_RS26430 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase Eco28_RS26435 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Eco28_RS26435 IPR017927 FAD-binding domain, ferredoxin reductase-type Eco28_RS26435 IPR033892 Ferredoxin--NADP reductase, bacteria Eco28_RS26435 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Eco28_RS26435 IPR001433 Oxidoreductase FAD/NAD(P)-binding Eco28_RS26435 IPR017938 Riboflavin synthase-like beta-barrel Eco28_RS26440 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Eco28_RS26440 IPR006015 Universal stress protein A family Eco28_RS26440 IPR006016 UspA Eco28_RS26445 IPR035571 UPF0234-like, C-terminal Eco28_RS26445 IPR005272 Conserved hypothetical protein CHP00743 Eco28_RS26450 IPR008523 Protein of unknown function DUF805 Eco28_RS26455 IPR009918 Protein of unknown function DUF1454 Eco28_RS26465 IPR013785 Aldolase-type TIM barrel Eco28_RS26465 IPR035990 Triosephosphate isomerase superfamily Eco28_RS26465 IPR020861 Triosephosphate isomerase, active site Eco28_RS26465 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic Eco28_RS26465 IPR000652 Triosephosphate isomerase Eco28_RS26470 IPR015993 CDP-diacylglycerol pyrophosphatase, proteobacterial Eco28_RS26470 IPR038433 CDP-diacylglycerol pyrophosphatase superfamily Eco28_RS26470 IPR003763 CDP-diacylglycerol pyrophosphatase Eco28_RS26470 IPR036265 HIT-like superfamily Eco28_RS26475 IPR034408 Sulphate/thiosulphate-binding site Eco28_RS26475 IPR005669 Thiosulphate/Sulfate-binding protein Eco28_RS26475 IPR000957 Sulphate/thiosulphate-binding, conserved site Eco28_RS26480 IPR000023 Phosphofructokinase domain Eco28_RS26480 IPR015912 Phosphofructokinase, conserved site Eco28_RS26480 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type Eco28_RS26480 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic Eco28_RS26480 IPR022953 ATP-dependent 6-phosphofructokinase Eco28_RS26480 IPR035966 Phosphofructokinase superfamily Eco28_RS26485 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Eco28_RS26485 IPR002524 Cation efflux protein Eco28_RS26485 IPR027470 Cation efflux protein, cytoplasmic domain Eco28_RS26485 IPR027469 Cation efflux transmembrane domain superfamily Eco28_RS26485 IPR023783 Cation efflux pump FieF Eco28_RS26490 IPR007684 Zinc finger, Ogr/Delta-type Eco28_RS26530 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily Eco28_RS26530 IPR006120 Resolvase, HTH domain Eco28_RS26530 IPR006119 Resolvase, N-terminal catalytic domain Eco28_RS26530 IPR009057 Homeobox-like domain superfamily Eco28_RS26530 IPR006118 Recombinase, conserved site Eco28_RS26540 IPR036397 Ribonuclease H superfamily Eco28_RS26540 IPR012337 Ribonuclease H-like superfamily Eco28_RS26540 IPR032874 DDE domain Eco28_RS26540 IPR001584 Integrase, catalytic core Eco28_RS26545 IPR016032 Signal transduction response regulator, C-terminal effector Eco28_RS26545 IPR000792 Transcription regulator LuxR, C-terminal Eco28_RS26550 IPR012338 Beta-lactamase/transpeptidase-like Eco28_RS26550 IPR000871 Beta-lactamase, class-A Eco28_RS26550 IPR023650 Beta-lactamase, class-A active site Eco28_RS26560 IPR000489 Pterin-binding domain Eco28_RS26560 IPR011005 Dihydropteroate synthase-like Eco28_RS26560 IPR006390 Dihydropteroate synthase Eco28_RS26565 IPR000390 Small multidrug resistance protein family Eco28_RS26570 IPR025184 Domain of unknown function DUF4111 Eco28_RS26575 IPR024072 Dihydrofolate reductase-like domain superfamily Eco28_RS26575 IPR012259 Dihydrofolate reductase Eco28_RS26575 IPR001796 Dihydrofolate reductase domain Eco28_RS26575 IPR017925 Dihydrofolate reductase conserved site Eco28_RS26580 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS26580 IPR010998 Integrase/recombinase, N-terminal Eco28_RS26580 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS26580 IPR002104 Integrase, catalytic domain Eco28_RS26580 IPR011946 Integrase, integron-type Eco28_RS26580 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS26585 IPR001584 Integrase, catalytic core Eco28_RS26585 IPR012337 Ribonuclease H-like superfamily Eco28_RS26585 IPR036397 Ribonuclease H superfamily Eco28_RS26585 IPR032874 DDE domain Eco28_RS26605 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS26610 IPR003458 Bacteriophage T4, Gp38, tail fibre assembly Eco28_RS26615 IPR011083 Phage tail collar domain Eco28_RS26615 IPR037053 Phage tail collar domain superfamily Eco28_RS26705 IPR030935 Phage portal protein PBSX family, Proteobacteria Eco28_RS26705 IPR006430 Phage portal protein PBSX family Eco28_RS26710 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS26710 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site Eco28_RS26710 IPR001525 C-5 cytosine methyltransferase Eco28_RS26710 IPR018117 DNA methylase, C-5 cytosine-specific, active site Eco28_RS26725 IPR008766 Replication gene A protein Eco28_RS26770 IPR010998 Integrase/recombinase, N-terminal Eco28_RS26770 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS26770 IPR023009 Tyrosine recombinase XerC/XerD Eco28_RS26770 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS26770 IPR011931 Tyrosine recombinase XerC Eco28_RS26770 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS26770 IPR002104 Integrase, catalytic domain Eco28_RS26775 IPR012899 LTXXQ motif family protein Eco28_RS26780 IPR001867 OmpR/PhoB-type DNA-binding domain Eco28_RS26780 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS26780 IPR039420 Transcriptional regulatory protein WalR-like Eco28_RS26780 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS26780 IPR011006 CheY-like superfamily Eco28_RS26785 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS26785 IPR032404 Two-component sensor protein CpxA, periplasmic domain Eco28_RS26785 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS26785 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS26785 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS26785 IPR003660 HAMP domain Eco28_RS26785 IPR038515 CpxA, periplasmic domain superfamily Eco28_RS26785 IPR005467 Histidine kinase domain Eco28_RS26785 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS26790 IPR011037 Pyruvate kinase-like, insert domain superfamily Eco28_RS26790 IPR005302 Molybdenum cofactor sulfurase, C-terminal Eco28_RS26790 IPR005163 3-alpha domain Eco28_RS26795 IPR018395 2-keto-3-deoxygluconate permease, subgroup Eco28_RS26795 IPR004684 2-keto-3-deoxygluconate permease Eco28_RS26805 IPR019833 Manganese/iron superoxide dismutase, binding site Eco28_RS26805 IPR019832 Manganese/iron superoxide dismutase, C-terminal Eco28_RS26805 IPR019831 Manganese/iron superoxide dismutase, N-terminal Eco28_RS26805 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily Eco28_RS26805 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily Eco28_RS26805 IPR001189 Manganese/iron superoxide dismutase Eco28_RS26810 IPR004673 L-rhamnose-proton symport, RhaT Eco28_RS26815 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS26815 IPR023699 Transcription activator HTH, RhaR Eco28_RS26815 IPR011051 RmlC-like cupin domain superfamily Eco28_RS26815 IPR018062 HTH domain AraC-type, conserved site Eco28_RS26815 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS26815 IPR009057 Homeobox-like domain superfamily Eco28_RS26815 IPR003313 AraC-type arabinose-binding/dimerisation domain Eco28_RS26815 IPR014710 RmlC-like jelly roll fold Eco28_RS26820 IPR020449 Transcription regulator HTH, AraC- type Eco28_RS26820 IPR037923 Transcription regulator HTH-like Eco28_RS26820 IPR009057 Homeobox-like domain superfamily Eco28_RS26820 IPR014710 RmlC-like jelly roll fold Eco28_RS26820 IPR018062 HTH domain AraC-type, conserved site Eco28_RS26820 IPR018060 DNA binding HTH domain, AraC-type Eco28_RS26820 IPR023609 Transcription regulator HTH, RhaS Eco28_RS26820 IPR003313 AraC-type arabinose-binding/dimerisation domain Eco28_RS26825 IPR018484 Carbohydrate kinase, FGGY, N-terminal Eco28_RS26825 IPR013449 Rhamnulokinase Eco28_RS26825 IPR018485 Carbohydrate kinase, FGGY, C-terminal Eco28_RS26830 IPR009308 Rhamnose isomerase Eco28_RS26830 IPR036237 Xylose isomerase-like superfamily Eco28_RS26835 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Eco28_RS26835 IPR001303 Class II aldolase/adducin N-terminal Eco28_RS26835 IPR013447 Rhamnulose-1-phosphate aldolase Eco28_RS26840 IPR013448 L-rhamnose mutarotase Eco28_RS26840 IPR008000 Rhamnose/fucose mutarotase Eco28_RS26840 IPR011008 Dimeric alpha-beta barrel Eco28_RS26850 IPR002178 PTS EIIA type-2 domain Eco28_RS26850 IPR016152 Phosphotransferase/anion transporter Eco28_RS26850 IPR004715 Phosphotransferase system, IIA component fructose subfamily Eco28_RS26860 IPR023367 Peptidase M42, domain 2 Eco28_RS26860 IPR008007 Peptidase M42 Eco28_RS26865 IPR013196 Helix-turn-helix, type 11 Eco28_RS26865 IPR016152 Phosphotransferase/anion transporter Eco28_RS26865 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS26865 IPR002178 PTS EIIA type-2 domain Eco28_RS26865 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS26870 IPR024291 Protein of unknown function DUF3829 Eco28_RS26875 IPR003786 Sulfur carrier protein FdhD Eco28_RS26875 IPR016193 Cytidine deaminase-like Eco28_RS26885 IPR006656 Molybdopterin oxidoreductase Eco28_RS26885 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS26885 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS26885 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS26885 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site Eco28_RS26885 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS26885 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS26885 IPR006443 Formate dehydrogenase-N, alpha subunit Eco28_RS26890 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain Eco28_RS26890 IPR006657 Molybdopterin dinucleotide-binding domain Eco28_RS26890 IPR006311 Twin-arginine translocation pathway, signal sequence Eco28_RS26890 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site Eco28_RS26890 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site Eco28_RS26890 IPR006656 Molybdopterin oxidoreductase Eco28_RS26890 IPR009010 Aspartate decarboxylase-like domain superfamily Eco28_RS26890 IPR006443 Formate dehydrogenase-N, alpha subunit Eco28_RS26895 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Eco28_RS26895 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Eco28_RS26895 IPR038384 Formate dehydrogenase, C-terminal domain superfamily Eco28_RS26895 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria Eco28_RS26895 IPR014603 Formate dehydrogenase iron-sulphur subunit Eco28_RS26895 IPR015246 Formate dehydrogenase, transmembrane Eco28_RS26900 IPR006471 Formate dehydrogenase, gamma subunit Eco28_RS26900 IPR016174 Di-haem cytochrome, transmembrane Eco28_RS26900 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase Eco28_RS26905 IPR024064 FdhE-like superfamily Eco28_RS26905 IPR006452 Formate dehydrogenase accessory protein Eco28_RS26915 IPR002145 Ribbon-helix-helix protein, CopG Eco28_RS26915 IPR013321 Arc-type ribbon-helix-helix Eco28_RS26935 IPR000182 GNAT domain Eco28_RS26935 IPR029069 HotDog domain superfamily Eco28_RS26935 IPR012660 Thioesterase, putative Eco28_RS26935 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS26940 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Eco28_RS26940 IPR003732 D-aminoacyl-tRNA deacylase DTD Eco28_RS26945 IPR023679 Uncharacterised protein family UPF0761, bacterial Eco28_RS26945 IPR017039 Virulence factor BrkB Eco28_RS26950 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS26950 IPR036412 HAD-like superfamily Eco28_RS26950 IPR006439 HAD hydrolase, subfamily IA Eco28_RS26950 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Eco28_RS26950 IPR023214 HAD superfamily Eco28_RS26955 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS26955 IPR011991 ArsR-like helix-turn-helix domain Eco28_RS26955 IPR014036 DeoR C-terminal sensor domain Eco28_RS26955 IPR001034 DeoR-type HTH domain Eco28_RS26955 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS26955 IPR018356 Transcription regulator, HTH DeoR-type, conserved site Eco28_RS26955 IPR037171 NagB/RpiA transferase-like Eco28_RS26960 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS26960 IPR030877 Sulfofructose kinase Eco28_RS26960 IPR029056 Ribokinase-like Eco28_RS26960 IPR002139 Ribokinase/fructokinase Eco28_RS26960 IPR011611 Carbohydrate kinase PfkB Eco28_RS26965 IPR015815 3-hydroxyisobutyrate dehydrogenase-related Eco28_RS26965 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Eco28_RS26965 IPR030876 3-sulfolactaldehyde reductase Eco28_RS26965 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site Eco28_RS26965 IPR036291 NAD(P)-binding domain superfamily Eco28_RS26965 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS26965 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS26965 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain Eco28_RS26970 IPR017291 Sulfofructosephosphate aldolase, YihT Eco28_RS26970 IPR002915 DeoC/FbaB/ lacD aldolase Eco28_RS26970 IPR013785 Aldolase-type TIM barrel Eco28_RS26975 IPR008928 Six-hairpin glycosidase superfamily Eco28_RS26975 IPR012341 Six-hairpin glycosidase-like superfamily Eco28_RS26975 IPR030875 Sulfoquinovose isomerase Eco28_RS26975 IPR034116 AGE domain Eco28_RS26980 IPR014718 Glycoside hydrolase-type carbohydrate-binding Eco28_RS26980 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase Eco28_RS26980 IPR037480 YihR-like Eco28_RS26980 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS26990 IPR011013 Galactose mutarotase-like domain superfamily Eco28_RS26990 IPR000322 Glycoside hydrolase family 31 Eco28_RS26990 IPR013780 Glycosyl hydrolase, all-beta Eco28_RS26990 IPR017853 Glycoside hydrolase superfamily Eco28_RS26995 IPR018043 Sodium:galactoside symporter, conserved site Eco28_RS26995 IPR001927 Sodium:galactoside symporter Eco28_RS26995 IPR036259 MFS transporter superfamily Eco28_RS26995 IPR039672 Lactose permease-like Eco28_RS27000 IPR018043 Sodium:galactoside symporter, conserved site Eco28_RS27000 IPR036259 MFS transporter superfamily Eco28_RS27000 IPR039672 Lactose permease-like Eco28_RS27000 IPR001927 Sodium:galactoside symporter Eco28_RS27005 IPR009331 Oligogalacturonate-specific porin Eco28_RS27010 IPR036259 MFS transporter superfamily Eco28_RS27010 IPR020846 Major facilitator superfamily domain Eco28_RS27010 IPR011701 Major facilitator superfamily Eco28_RS27015 IPR036237 Xylose isomerase-like superfamily Eco28_RS27015 IPR013022 Xylose isomerase-like, TIM barrel domain Eco28_RS27020 IPR000524 Transcription regulator HTH, GntR Eco28_RS27020 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily Eco28_RS27020 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS27020 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS27020 IPR011663 UbiC transcription regulator-associated Eco28_RS27025 IPR009000 Translation protein, beta-barrel domain superfamily Eco28_RS27025 IPR042116 GTP-binding protein TypA/BipA, C-terminal Eco28_RS27025 IPR006298 GTP-binding protein TypA Eco28_RS27025 IPR031157 Tr-type G domain, conserved site Eco28_RS27025 IPR004161 Translation elongation factor EFTu-like, domain 2 Eco28_RS27025 IPR000640 Elongation factor EFG, domain V-like Eco28_RS27025 IPR035647 EF-G domain III/V-like Eco28_RS27025 IPR035651 BipA, domain V Eco28_RS27025 IPR000795 Transcription factor, GTP-binding domain Eco28_RS27025 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27025 IPR005225 Small GTP-binding protein domain Eco28_RS27035 IPR008147 Glutamine synthetase, beta-Grasp domain Eco28_RS27035 IPR036651 Glutamine synthetase, N-terminal domain superfamily Eco28_RS27035 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain Eco28_RS27035 IPR008146 Glutamine synthetase, catalytic domain Eco28_RS27035 IPR027303 Glutamine synthetase, glycine-rich site Eco28_RS27035 IPR004809 Glutamine synthetase type I Eco28_RS27035 IPR001637 Glutamine synthetase class-I, adenylation site Eco28_RS27035 IPR027302 Glutamine synthetase, N-terminal conserved site Eco28_RS27040 IPR013767 PAS fold Eco28_RS27040 IPR000014 PAS domain Eco28_RS27040 IPR004358 Signal transduction histidine kinase-related protein, C-terminal Eco28_RS27040 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily Eco28_RS27040 IPR035965 PAS domain superfamily Eco28_RS27040 IPR005467 Histidine kinase domain Eco28_RS27040 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain Eco28_RS27040 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Eco28_RS27040 IPR003594 Histidine kinase/HSP90-like ATPase Eco28_RS27045 IPR001789 Signal transduction response regulator, receiver domain Eco28_RS27045 IPR003593 AAA+ ATPase domain Eco28_RS27045 IPR011006 CheY-like superfamily Eco28_RS27045 IPR009057 Homeobox-like domain superfamily Eco28_RS27045 IPR002197 DNA binding HTH domain, Fis-type Eco28_RS27045 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27045 IPR010114 DNA-binding transcriptional regulator NtrC Eco28_RS27045 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 Eco28_RS27045 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Eco28_RS27045 IPR002078 RNA polymerase sigma factor 54 interaction domain Eco28_RS27045 IPR025944 Sigma-54 interaction domain, conserved site Eco28_RS27055 IPR006638 Elp3/MiaB/NifB Eco28_RS27055 IPR007197 Radical SAM Eco28_RS27055 IPR004558 Oxygen-independent coproporphyrinogen III oxidase HemN Eco28_RS27055 IPR034505 Anaerobic coproporphyrinogen-III oxidase Eco28_RS27055 IPR023404 Radical SAM, alpha/beta horseshoe Eco28_RS27055 IPR010723 HemN, C-terminal Eco28_RS27060 IPR007336 Der GTPase activator Eco28_RS27065 IPR030393 EngB-type guanine nucleotide-binding (G) domain Eco28_RS27065 IPR006073 GTP binding domain Eco28_RS27065 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27065 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC Eco28_RS27070 IPR002298 DNA polymerase A Eco28_RS27070 IPR020045 DNA polymerase I-like, H3TH domain Eco28_RS27070 IPR001098 DNA-directed DNA polymerase, family A, palm domain Eco28_RS27070 IPR019760 DNA-directed DNA polymerase, family A, conserved site Eco28_RS27070 IPR036279 5'-3' exonuclease, C-terminal domain superfamily Eco28_RS27070 IPR018320 DNA polymerase 1 Eco28_RS27070 IPR029060 PIN-like domain superfamily Eco28_RS27070 IPR012337 Ribonuclease H-like superfamily Eco28_RS27070 IPR036397 Ribonuclease H superfamily Eco28_RS27070 IPR002421 5'-3' exonuclease, N-terminal Eco28_RS27070 IPR002562 3'-5' exonuclease domain Eco28_RS27070 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal Eco28_RS27070 IPR008918 Helix-hairpin-helix motif, class 2 Eco28_RS27080 IPR002123 Phospholipid/glycerol acyltransferase Eco28_RS27085 IPR010352 Protein of unknown function DUF945 Eco28_RS27090 IPR001853 DSBA-like thioredoxin domain Eco28_RS27090 IPR036249 Thioredoxin-like superfamily Eco28_RS27090 IPR017937 Thioredoxin, conserved site Eco28_RS27090 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL Eco28_RS27090 IPR013766 Thioredoxin domain Eco28_RS27095 IPR002575 Aminoglycoside phosphotransferase Eco28_RS27095 IPR032882 SrkA/RdoA protein kinase Eco28_RS27095 IPR011009 Protein kinase-like domain superfamily Eco28_RS27100 IPR038134 YihD-like superfamily Eco28_RS27100 IPR009383 Protein of unknown function DUF1040 Eco28_RS27105 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS27105 IPR025877 MobA-like NTP transferase Eco28_RS27105 IPR013482 Molybdenum cofactor guanylyltransferase Eco28_RS27110 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27110 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain Eco28_RS27140 IPR026816 Flavodoxin domain Eco28_RS27140 IPR001226 Flavodoxin, conserved site Eco28_RS27140 IPR008254 Flavodoxin/nitric oxide synthase Eco28_RS27140 IPR029039 Flavoprotein-like superfamily Eco28_RS27145 IPR004772 TrkH potassium transport family Eco28_RS27145 IPR003445 Cation transporter Eco28_RS27150 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS27150 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal Eco28_RS27150 IPR036956 Impact, N-terminal domain superfamily Eco28_RS27150 IPR001498 Impact, N-terminal Eco28_RS27150 IPR015796 Impact family, bacterial/archaeal Eco28_RS27150 IPR023582 Impact family Eco28_RS27150 IPR035647 EF-G domain III/V-like Eco28_RS27150 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site Eco28_RS27155 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Eco28_RS27155 IPR000994 Peptidase M24 Eco28_RS27155 IPR036005 Creatinase/aminopeptidase-like Eco28_RS27155 IPR022846 Xaa-Pro dipeptidase Eco28_RS27155 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site Eco28_RS27160 IPR036291 NAD(P)-binding domain superfamily Eco28_RS27160 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site Eco28_RS27160 IPR012799 Fatty oxidation complex, alpha subunit FadB Eco28_RS27160 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding Eco28_RS27160 IPR001753 Enoyl-CoA hydratase/isomerase Eco28_RS27160 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal Eco28_RS27160 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site Eco28_RS27160 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS27160 IPR029045 ClpP/crotonase-like domain superfamily Eco28_RS27165 IPR002155 Thiolase Eco28_RS27165 IPR020613 Thiolase, conserved site Eco28_RS27165 IPR020617 Thiolase, C-terminal Eco28_RS27165 IPR020610 Thiolase, active site Eco28_RS27165 IPR020615 Thiolase, acyl-enzyme intermediate active site Eco28_RS27165 IPR020616 Thiolase, N-terminal Eco28_RS27165 IPR016039 Thiolase-like Eco28_RS27165 IPR012805 Acetyl-CoA C-acyltransferase FadA Eco28_RS27170 IPR017927 FAD-binding domain, ferredoxin reductase-type Eco28_RS27170 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Eco28_RS27170 IPR017938 Riboflavin synthase-like beta-barrel Eco28_RS27170 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Eco28_RS27170 IPR001433 Oxidoreductase FAD/NAD(P)-binding Eco28_RS27175 IPR023677 UbiD decarboxylyase, bacteria Eco28_RS27175 IPR002830 UbiD decarboxylyase family Eco28_RS27180 IPR006645 NusG, N-terminal Eco28_RS27180 IPR036735 NusG, N-terminal domain superfamily Eco28_RS27180 IPR010215 Transcription antitermination protein RfaH Eco28_RS27185 IPR018228 Deoxyribonuclease, TatD-related, conserved site Eco28_RS27185 IPR024918 3'-5' ssDNA/RNA exonuclease TatD Eco28_RS27185 IPR032466 Metal-dependent hydrolase Eco28_RS27185 IPR001130 TatD family Eco28_RS27190 IPR019820 Sec-independent periplasmic protein translocase, conserved site Eco28_RS27190 IPR002033 Sec-independent periplasmic protein translocase TatC Eco28_RS27195 IPR018448 Twin-arginine translocation protein TatB Eco28_RS27200 IPR006312 Sec-independent protein translocase protein TatA/E Eco28_RS27200 IPR003369 Sec-independent protein translocase protein TatA/B/E Eco28_RS27205 IPR010232 Probable protein kinase UbiB Eco28_RS27205 IPR011009 Protein kinase-like domain superfamily Eco28_RS27205 IPR004147 UbiB domain Eco28_RS27210 IPR036527 SCP2 sterol-binding domain superfamily Eco28_RS27210 IPR038989 Ubiquinone biosynthesis protein UbiJ Eco28_RS27210 IPR003033 SCP2 sterol-binding domain Eco28_RS27215 IPR023576 UbiE/COQ5 methyltransferase, conserved site Eco28_RS27215 IPR004033 UbiE/COQ5 methyltransferase Eco28_RS27215 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS27220 IPR003798 DNA recombination RmuC Eco28_RS27225 IPR018016 Nucleoside phosphorylase, conserved site Eco28_RS27225 IPR010058 Uridine phosphorylase Eco28_RS27225 IPR035994 Nucleoside phosphorylase superfamily Eco28_RS27225 IPR000845 Nucleoside phosphorylase domain Eco28_RS27230 IPR002925 Dienelactone hydrolase Eco28_RS27230 IPR029058 Alpha/Beta hydrolase fold Eco28_RS27235 IPR006276 Cobalamin-independent methionine synthase Eco28_RS27235 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal Eco28_RS27235 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal Eco28_RS27235 IPR038071 UROD/MetE-like superfamily Eco28_RS27240 IPR000847 Transcription regulator HTH, LysR Eco28_RS27240 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS27240 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS27240 IPR037406 HTH-type transcriptional regulator MetR, PBP2 domain Eco28_RS27240 IPR005119 LysR, substrate-binding Eco28_RS27245 IPR004779 Carboxylate/Amino Acid/Amine Transporter Eco28_RS27245 IPR000620 EamA domain Eco28_RS27250 IPR006379 HAD-superfamily hydrolase, subfamily IIB Eco28_RS27250 IPR036412 HAD-like superfamily Eco28_RS27250 IPR000150 Cof family Eco28_RS27250 IPR023214 HAD superfamily Eco28_RS27255 IPR022742 Serine aminopeptidase, S33 Eco28_RS27255 IPR029058 Alpha/Beta hydrolase fold Eco28_RS27260 IPR001123 Amino acid exporter protein, LeuE-type Eco28_RS27260 IPR004778 Homoserine/Threonine efflux protein Eco28_RS27265 IPR001123 Amino acid exporter protein, LeuE-type Eco28_RS27265 IPR004778 Homoserine/Threonine efflux protein Eco28_RS27270 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27270 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain Eco28_RS27270 IPR018982 RQC domain Eco28_RS27270 IPR004589 DNA helicase, ATP-dependent, RecQ type Eco28_RS27270 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial Eco28_RS27270 IPR002121 HRDC domain Eco28_RS27270 IPR010997 HRDC-like superfamily Eco28_RS27270 IPR001650 Helicase, C-terminal Eco28_RS27270 IPR011545 DEAD/DEAH box helicase domain Eco28_RS27270 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS27270 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS27275 IPR036541 Phospholipase A1 superfamily Eco28_RS27275 IPR003187 Phospholipase A1 Eco28_RS27280 IPR029069 HotDog domain superfamily Eco28_RS27280 IPR003736 Phenylacetic acid degradation-related domain Eco28_RS27280 IPR006683 Thioesterase domain Eco28_RS27285 IPR004626 RarD protein Eco28_RS27285 IPR000620 EamA domain Eco28_RS27295 IPR024399 Protein of unknown function DUF2628 Eco28_RS27300 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB Eco28_RS27300 IPR004488 Magnesium/cobalt transport protein CorA Eco28_RS27315 IPR004488 Magnesium/cobalt transport protein CorA Eco28_RS27315 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB Eco28_RS27320 IPR002747 SAM-dependent chlorinase/fluorinase Eco28_RS27320 IPR023227 S-adenosyl-l-methionine hydroxide adenosyltransferase, C-terminal Eco28_RS27320 IPR023228 S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal Eco28_RS27325 IPR013986 DExx box DNA helicase domain superfamily Eco28_RS27325 IPR005753 DNA helicase, ATP-dependent, UvrD type Eco28_RS27325 IPR014017 UvrD-like DNA helicase, C-terminal Eco28_RS27325 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27325 IPR014016 UvrD-like helicase, ATP-binding domain Eco28_RS27325 IPR000212 DNA helicase, UvrD/REP type Eco28_RS27325 IPR034739 UvrD/AddA helicase, N-terminal Eco28_RS27330 IPR023214 HAD superfamily Eco28_RS27330 IPR036412 HAD-like superfamily Eco28_RS27330 IPR006439 HAD hydrolase, subfamily IA Eco28_RS27330 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS27335 IPR023009 Tyrosine recombinase XerC/XerD Eco28_RS27335 IPR011931 Tyrosine recombinase XerC Eco28_RS27335 IPR010998 Integrase/recombinase, N-terminal Eco28_RS27335 IPR002104 Integrase, catalytic domain Eco28_RS27335 IPR013762 Integrase-like, catalytic domain superfamily Eco28_RS27335 IPR011010 DNA breaking-rejoining enzyme, catalytic core Eco28_RS27335 IPR004107 Integrase, SAM-like, N-terminal Eco28_RS27340 IPR029016 GAF-like domain superfamily Eco28_RS27340 IPR007435 Protein of unknown function DUF484 Eco28_RS27345 IPR018510 Diaminopimelate epimerase, active site Eco28_RS27345 IPR001653 Diaminopimelate epimerase, DapF Eco28_RS27350 IPR032831 Prokaryotic lipoprotein-attachment site Eco28_RS27355 IPR002908 Frataxin/CyaY Eco28_RS27355 IPR036524 Frataxin/CyaY superfamily Eco28_RS27355 IPR020895 Frataxin conserved site Eco28_RS27360 IPR024685 Adenylate cyclase class-I, N-terminal domain Eco28_RS27360 IPR024686 Adenylate cyclase class-I, conserved site Eco28_RS27360 IPR000274 Adenylate cyclase, class-I Eco28_RS27370 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily Eco28_RS27370 IPR022418 Porphobilinogen deaminase, C-terminal Eco28_RS27370 IPR022417 Porphobilinogen deaminase, N-terminal Eco28_RS27370 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site Eco28_RS27370 IPR000860 Porphobilinogen deaminase Eco28_RS27375 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase Eco28_RS27375 IPR039793 Uroporphyrinogen-III synthase Eco28_RS27375 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily Eco28_RS27380 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX Eco28_RS27385 IPR010817 HemY, N-terminal Eco28_RS27385 IPR013105 Tetratricopeptide repeat 2 Eco28_RS27385 IPR019734 Tetratricopeptide repeat Eco28_RS27385 IPR011990 Tetratricopeptide-like helical domain superfamily Eco28_RS27385 IPR013026 Tetratricopeptide repeat-containing domain Eco28_RS27385 IPR005254 Heme biosynthesis-associated TPR protein Eco28_RS27390 IPR000917 Sulfatase, N-terminal Eco28_RS27390 IPR024607 Sulfatase, conserved site Eco28_RS27390 IPR017850 Alkaline-phosphatase-like, core domain superfamily Eco28_RS27395 IPR023885 4Fe4S-binding SPASM domain Eco28_RS27395 IPR013785 Aldolase-type TIM barrel Eco28_RS27395 IPR034491 Anaerobic Ser-type sulfatase-maturating enzyme Eco28_RS27395 IPR007197 Radical SAM Eco28_RS27420 IPR004840 Amino acid permease, conserved site Eco28_RS27420 IPR004841 Amino acid permease/ SLC12A domain Eco28_RS27425 IPR004629 Glycosyl transferase WecB/TagA/CpsF Eco28_RS27425 IPR023085 UDP-N-acetyl-D-mannosaminuronic acid transferase Eco28_RS27430 IPR010691 Probable ECA polymerase WzyE Eco28_RS27435 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase Eco28_RS27440 IPR002797 Polysaccharide biosynthesis protein Eco28_RS27440 IPR032896 Lipid III flippase WzxE Eco28_RS27445 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Eco28_RS27445 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS27445 IPR012749 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE-like Eco28_RS27445 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS27445 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS27445 IPR032894 dTDP-4-amino-4,6-dideoxygalactose transaminase WecE Eco28_RS27450 IPR016181 Acyl-CoA N-acyltransferase Eco28_RS27450 IPR012752 dTDP-fucosamine acetyltransferase WecD Eco28_RS27450 IPR002110 Ankyrin repeat Eco28_RS27450 IPR020683 Ankyrin repeat-containing domain Eco28_RS27450 IPR000182 GNAT domain Eco28_RS27460 IPR032891 UDP-N-acetyl-D-mannosamine dehydrogenase WecC Eco28_RS27460 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase Eco28_RS27460 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal Eco28_RS27460 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation Eco28_RS27460 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Eco28_RS27460 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal Eco28_RS27460 IPR017476 UDP-glucose/GDP-mannose dehydrogenase Eco28_RS27460 IPR036291 NAD(P)-binding domain superfamily Eco28_RS27460 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS27465 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Eco28_RS27465 IPR032892 UDP-N-acetylglucosamine 2-epimerase WecB Eco28_RS27465 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like Eco28_RS27470 IPR003856 Polysaccharide chain length determinant N-terminal domain Eco28_RS27470 IPR032895 ECA polysaccharide chain length modulation protein WzzE Eco28_RS27475 IPR012750 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase Eco28_RS27475 IPR000715 Glycosyl transferase, family 4 Eco28_RS27485 IPR011112 Rho termination factor, N-terminal Eco28_RS27485 IPR036269 Rho termination factor, N-terminal domain superfamily Eco28_RS27485 IPR041703 Transcription termination factor Rho, ATP binding domain Eco28_RS27485 IPR004665 Transcription termination factor Rho Eco28_RS27485 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27485 IPR012340 Nucleic acid-binding, OB-fold Eco28_RS27485 IPR011113 Rho termination factor, RNA-binding domain Eco28_RS27485 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Eco28_RS27485 IPR003593 AAA+ ATPase domain Eco28_RS27485 IPR011129 Cold shock domain Eco28_RS27495 IPR013766 Thioredoxin domain Eco28_RS27495 IPR005746 Thioredoxin Eco28_RS27495 IPR036249 Thioredoxin-like superfamily Eco28_RS27495 IPR017937 Thioredoxin, conserved site Eco28_RS27500 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site Eco28_RS27500 IPR014001 Helicase superfamily 1/2, ATP-binding domain Eco28_RS27500 IPR014014 RNA helicase, DEAD-box type, Q motif Eco28_RS27500 IPR023554 ATP-dependent RNA helicase RhlB type Eco28_RS27500 IPR001650 Helicase, C-terminal Eco28_RS27500 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27500 IPR011545 DEAD/DEAH box helicase domain Eco28_RS27510 IPR023709 Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase Eco28_RS27510 IPR003695 Ppx/GppA phosphatase Eco28_RS27510 IPR030673 Pyrophosphatase, GppA/Ppx-type Eco28_RS27515 IPR005752 ATP-dependent DNA helicase Rep Eco28_RS27515 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27515 IPR014016 UvrD-like helicase, ATP-binding domain Eco28_RS27515 IPR034739 UvrD/AddA helicase, N-terminal Eco28_RS27515 IPR000212 DNA helicase, UvrD/REP type Eco28_RS27515 IPR013986 DExx box DNA helicase domain superfamily Eco28_RS27515 IPR014017 UvrD-like DNA helicase, C-terminal Eco28_RS27520 IPR003477 mRNA interferase PemK-like Eco28_RS27525 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type Eco28_RS27525 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site Eco28_RS27530 IPR036291 NAD(P)-binding domain superfamily Eco28_RS27530 IPR013328 6-phosphogluconate dehydrogenase, domain 2 Eco28_RS27530 IPR013023 Ketol-acid reductoisomerase Eco28_RS27530 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Eco28_RS27530 IPR013116 Ketol-acid reductoisomerase, N-terminal Eco28_RS27530 IPR000506 Ketol-acid reductoisomerase, C-terminal Eco28_RS27535 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS27535 IPR037404 HTH-type transcriptional activator IlvY, PBP2 domain Eco28_RS27535 IPR005119 LysR, substrate-binding Eco28_RS27535 IPR000847 Transcription regulator HTH, LysR Eco28_RS27535 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS27540 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site Eco28_RS27540 IPR001926 Pyridoxal-phosphate dependent enzyme Eco28_RS27540 IPR001721 Threonine dehydratase, ACT-like domain Eco28_RS27540 IPR038110 Threonine dehydratase, ACT-like domain superfamily Eco28_RS27540 IPR005787 Threonine dehydratase, biosynthetic Eco28_RS27540 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Eco28_RS27545 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site Eco28_RS27545 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase Eco28_RS27545 IPR037237 IlvD/EDD, N-terminal domain Eco28_RS27545 IPR042096 Dihydroxy-acid dehydratase, C-terminal Eco28_RS27545 IPR004404 Dihydroxy-acid dehydratase Eco28_RS27550 IPR005785 Branched-chain amino acid aminotransferase I Eco28_RS27550 IPR036038 Aminotransferase-like, PLP-dependent enzymes Eco28_RS27550 IPR018300 Aminotransferase, class IV, conserved site Eco28_RS27550 IPR001544 Aminotransferase class IV Eco28_RS27550 IPR033939 Branched-chain aminotransferase Eco28_RS27555 IPR002912 ACT domain Eco28_RS27560 IPR012846 Acetolactate synthase, large subunit, biosynthetic Eco28_RS27560 IPR039368 Acetolactate synthase large subunit, TPP binding domain Eco28_RS27560 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Eco28_RS27560 IPR000399 TPP-binding enzyme, conserved site Eco28_RS27560 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Eco28_RS27560 IPR029061 Thiamin diphosphate-binding fold Eco28_RS27560 IPR012000 Thiamine pyrophosphate enzyme, central domain Eco28_RS27560 IPR029035 DHS-like NAD/FAD-binding domain superfamily Eco28_RS27565 IPR012567 IlvGEDA operon leader peptide Eco28_RS27570 IPR025158 Mg chelatase-related protein, C-terminal domain Eco28_RS27570 IPR004482 Mg chelatase-related protein Eco28_RS27570 IPR003593 AAA+ ATPase domain Eco28_RS27570 IPR000523 Magnesium chelatase ChlI domain Eco28_RS27570 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27570 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS27575 IPR007335 Protein of unknown function DUF413 Eco28_RS27580 IPR005119 LysR, substrate-binding Eco28_RS27580 IPR000847 Transcription regulator HTH, LysR Eco28_RS27580 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS27580 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS27580 IPR020890 Transcription regulator HTH, HdfR Eco28_RS27615 IPR011711 GntR, C-terminal Eco28_RS27615 IPR008920 Transcription regulator FadR/GntR, C-terminal Eco28_RS27615 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS27615 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS27615 IPR000524 Transcription regulator HTH, GntR Eco28_RS27620 IPR020846 Major facilitator superfamily domain Eco28_RS27620 IPR011701 Major facilitator superfamily Eco28_RS27620 IPR004638 Drug resistance transporter EmrB-like Eco28_RS27620 IPR036259 MFS transporter superfamily Eco28_RS27625 IPR028082 Periplasmic binding protein-like I Eco28_RS27625 IPR010982 Lambda repressor-like, DNA-binding domain superfamily Eco28_RS27625 IPR000843 LacI-type HTH domain Eco28_RS27630 IPR002139 Ribokinase/fructokinase Eco28_RS27630 IPR011611 Carbohydrate kinase PfkB Eco28_RS27630 IPR011877 Ribokinase Eco28_RS27630 IPR029056 Ribokinase-like Eco28_RS27630 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site Eco28_RS27635 IPR025997 Periplasmic binding protein Eco28_RS27635 IPR028082 Periplasmic binding protein-like I Eco28_RS27640 IPR001851 ABC transporter, permease Eco28_RS27645 IPR003593 AAA+ ATPase domain Eco28_RS27645 IPR003439 ABC transporter-like Eco28_RS27645 IPR017871 ABC transporter, conserved site Eco28_RS27645 IPR015861 ABC transporter, ribose import, RbsA Eco28_RS27645 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27650 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU Eco28_RS27650 IPR023750 RbsD-like superfamily Eco28_RS27650 IPR023064 D-ribose pyranase Eco28_RS27655 IPR003855 Potassium transporter Eco28_RS27655 IPR023051 Potassium uptake protein, low affinity, Kup Eco28_RS27660 IPR041538 ATPase RavA-like, AAA lid domain Eco28_RS27660 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27660 IPR003593 AAA+ ATPase domain Eco28_RS27660 IPR023671 ATPase RavA Eco28_RS27660 IPR011704 ATPase, dynein-related, AAA domain Eco28_RS27660 IPR022547 ATPase, RavA, C-terminal Eco28_RS27665 IPR036465 von Willebrand factor A-like domain superfamily Eco28_RS27665 IPR023481 Uncharacterised protein family ViaA Eco28_RS27665 IPR002035 von Willebrand factor, type A Eco28_RS27665 IPR008912 Uncharacterised protein family CoxE-like Eco28_RS27670 IPR006195 Aminoacyl-tRNA synthetase, class II Eco28_RS27670 IPR004618 Aspartate--ammonia ligase Eco28_RS27675 IPR011991 ArsR-like helix-turn-helix domain Eco28_RS27675 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS27675 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS27675 IPR019885 Transcription regulator HTH, AsnC-type, conserved site Eco28_RS27675 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain Eco28_RS27675 IPR000485 AsnC-type HTH domain Eco28_RS27675 IPR011008 Dimeric alpha-beta barrel Eco28_RS27675 IPR019888 Transcription regulator AsnC-type Eco28_RS27680 IPR008254 Flavodoxin/nitric oxide synthase Eco28_RS27680 IPR029039 Flavoprotein-like superfamily Eco28_RS27685 IPR020595 MnmG-related, conserved site Eco28_RS27685 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related Eco28_RS27685 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG Eco28_RS27685 IPR026904 GidA associated domain 3 Eco28_RS27685 IPR036188 FAD/NAD(P)-binding domain superfamily Eco28_RS27690 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS27690 IPR003682 rRNA small subunit methyltransferase G Eco28_RS27695 IPR005598 ATP synthase protein I Eco28_RS27700 IPR023011 ATP synthase, F0 complex, subunit A, active site Eco28_RS27700 IPR000568 ATP synthase, F0 complex, subunit A Eco28_RS27700 IPR035908 ATP synthase, F0 complex, subunit A superfamily Eco28_RS27705 IPR000454 ATP synthase, F0 complex, subunit C Eco28_RS27705 IPR038662 F1F0 ATP synthase subunit C superfamily Eco28_RS27705 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast Eco28_RS27705 IPR002379 V-ATPase proteolipid subunit C-like domain Eco28_RS27705 IPR035921 F/V-ATP synthase subunit C superfamily Eco28_RS27705 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site Eco28_RS27710 IPR005864 ATP synthase, F0 complex, subunit b, bacterial Eco28_RS27710 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily Eco28_RS27710 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast Eco28_RS27715 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily Eco28_RS27715 IPR020781 ATPase, OSCP/delta subunit, conserved site Eco28_RS27715 IPR000711 ATPase, OSCP/delta subunit Eco28_RS27720 IPR005294 ATP synthase, F1 complex, alpha subunit Eco28_RS27720 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain Eco28_RS27720 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Eco28_RS27720 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27720 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Eco28_RS27720 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain Eco28_RS27720 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily Eco28_RS27720 IPR000793 ATP synthase, alpha subunit, C-terminal Eco28_RS27720 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily Eco28_RS27720 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily Eco28_RS27725 IPR000131 ATP synthase, F1 complex, gamma subunit Eco28_RS27725 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily Eco28_RS27725 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site Eco28_RS27730 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain Eco28_RS27730 IPR005722 ATP synthase, F1 complex, beta subunit Eco28_RS27730 IPR003593 AAA+ ATPase domain Eco28_RS27730 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site Eco28_RS27730 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27730 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal Eco28_RS27730 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain Eco28_RS27730 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily Eco28_RS27735 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit Eco28_RS27735 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily Eco28_RS27735 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal Eco28_RS27735 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain Eco28_RS27735 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal Eco28_RS27740 IPR029044 Nucleotide-diphospho-sugar transferases Eco28_RS27740 IPR011004 Trimeric LpxA-like superfamily Eco28_RS27740 IPR025877 MobA-like NTP transferase Eco28_RS27740 IPR018357 Hexapeptide transferase, conserved site Eco28_RS27740 IPR001451 Hexapeptide repeat Eco28_RS27740 IPR038009 GlmU, C-terminal LbH domain Eco28_RS27740 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase Eco28_RS27745 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising Eco28_RS27745 IPR029055 Nucleophile aminohydrolases, N-terminal Eco28_RS27745 IPR001347 Sugar isomerase (SIS) Eco28_RS27745 IPR017932 Glutamine amidotransferase type 2 domain Eco28_RS27745 IPR035466 GlmS/AgaS, SIS domain 1 Eco28_RS27745 IPR035490 GlmS/FrlB, SIS domain 2 Eco28_RS27755 IPR005673 Phosphate ABC transporter, substrate-binding protein PstS Eco28_RS27755 IPR024370 PBP domain Eco28_RS27760 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS27760 IPR011864 Phosphate ABC transporter, permease protein PstC Eco28_RS27760 IPR035906 MetI-like superfamily Eco28_RS27765 IPR005672 Phosphate transport system permease protein PstA Eco28_RS27765 IPR035906 MetI-like superfamily Eco28_RS27765 IPR000515 ABC transporter type 1, transmembrane domain MetI-like Eco28_RS27770 IPR015850 ABC transporter, phosphate import, PstB Eco28_RS27770 IPR005670 Phosphate transport system permease protein 1 Eco28_RS27770 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27770 IPR017871 ABC transporter, conserved site Eco28_RS27770 IPR003439 ABC transporter-like Eco28_RS27770 IPR003593 AAA+ ATPase domain Eco28_RS27775 IPR026022 PhoU domain Eco28_RS27775 IPR038078 PhoU-like domain superfamily Eco28_RS27775 IPR028366 Phosphate transport system protein PhoU Eco28_RS27810 IPR036412 HAD-like superfamily Eco28_RS27810 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Eco28_RS27810 IPR006439 HAD hydrolase, subfamily IA Eco28_RS27810 IPR041492 Haloacid dehalogenase-like hydrolase Eco28_RS27810 IPR023214 HAD superfamily Eco28_RS27815 IPR006043 Xanthine/uracil/vitamin C permease Eco28_RS27815 IPR026033 Azaguanine-like transporters Eco28_RS27820 IPR005025 NADPH-dependent FMN reductase-like Eco28_RS27820 IPR029039 Flavoprotein-like superfamily Eco28_RS27825 IPR037143 4'-phosphopantetheinyl transferase domain superfamily Eco28_RS27830 IPR000847 Transcription regulator HTH, LysR Eco28_RS27830 IPR037402 HTH-type transcriptional regulator YidZ, PBP2 domain Eco28_RS27830 IPR036388 Winged helix-like DNA-binding domain superfamily Eco28_RS27830 IPR023746 Transcription regulator HTH, YidZ Eco28_RS27830 IPR036390 Winged helix DNA-binding domain superfamily Eco28_RS27830 IPR005119 LysR, substrate-binding Eco28_RS27835 IPR011701 Major facilitator superfamily Eco28_RS27835 IPR020846 Major facilitator superfamily domain Eco28_RS27835 IPR036259 MFS transporter superfamily Eco28_RS27835 IPR023697 Multidrug resistance protein MdtL Eco28_RS27840 IPR018227 Amino acid/polyamine transporter 2 Eco28_RS27840 IPR013061 Tryptophan/tryrosine permease, conserved site Eco28_RS27840 IPR013059 Tryptophan/tyrosine transporter Eco28_RS27845 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 Eco28_RS27845 IPR015421 Pyridoxal phosphate-dependent transferase, major domain Eco28_RS27845 IPR015424 Pyridoxal phosphate-dependent transferase Eco28_RS27845 IPR018176 Tryptophanase, conserved site Eco28_RS27845 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase Eco28_RS27845 IPR013440 Tryptophanase Eco28_RS27845 IPR011166 Beta-eliminating lyase family Eco28_RS27850 IPR012620 Tryptophanese operon leader peptide Eco28_RS27860 IPR018948 GTP-binding protein TrmE, N-terminal Eco28_RS27860 IPR006073 GTP binding domain Eco28_RS27860 IPR004520 tRNA modification GTPase MnmE Eco28_RS27860 IPR027368 tRNA modification GTPase MnmE domain 2 Eco28_RS27860 IPR025867 MnmE, helical domain Eco28_RS27860 IPR027417 P-loop containing nucleoside triphosphate hydrolase Eco28_RS27860 IPR005225 Small GTP-binding protein domain Eco28_RS27860 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 Eco28_RS27860 IPR031168 TrmE-type guanine nucleotide-binding domain Eco28_RS27865 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 Eco28_RS27865 IPR019998 Membrane insertase YidC Eco28_RS27865 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Eco28_RS27865 IPR028053 Membrane insertase YidC, N-terminal Eco28_RS27865 IPR038210 Membrane insertase YidC, periplasmic domain Eco28_RS27865 IPR038221 YidC, periplasmic domain superfamily Eco28_RS27870 IPR002696 Putative membrane protein insertion efficiency factor Eco28_RS27875 IPR020539 Ribonuclease P, conserved site Eco28_RS27875 IPR000100 Ribonuclease P Eco28_RS27875 IPR020568 Ribosomal protein S5 domain 2-type fold Eco28_RS27875 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Eco28_RS27880 IPR000271 Ribosomal protein L34 Eco28_RS27880 IPR020939 Ribosomal protein L34, conserved site