locus-tag class description Eco28_RS00005 PF00308 Bacterial dnaA protein Eco28_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix Eco28_RS00005 PF11638 DnaA N-terminal domain Eco28_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain Eco28_RS00010 PF02767 DNA polymerase III beta subunit, central domain Eco28_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain Eco28_RS00015 PF02463 RecF/RecN/SMC N terminal domain Eco28_RS00020 PF01751 Toprim domain Eco28_RS00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS00020 PF18053 DNA gyrase B subunit insert domain Eco28_RS00020 PF00986 DNA gyrase B subunit, carboxyl terminus Eco28_RS00020 PF00204 DNA gyrase B Eco28_RS00025 PF06078 Bacterial protein of unknown function (DUF937) Eco28_RS00040 PF01494 FAD binding domain Eco28_RS00045 PF12566 Protein of unknown function (DUF3748) Eco28_RS00045 PF07676 WD40-like Beta Propeller Repeat Eco28_RS00050 PF07119 Protein of unknown function (DUF1375) Eco28_RS00055 PF00011 Hsp20/alpha crystallin family Eco28_RS00060 PF00011 Hsp20/alpha crystallin family Eco28_RS00065 PF02080 TrkA-C domain Eco28_RS00065 PF06826 Predicted Permease Membrane Region Eco28_RS00070 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS00070 PF07702 UTRA domain Eco28_RS00075 PF02378 Phosphotransferase system, EIIC Eco28_RS00075 PF00367 phosphotransferase system, EIIB Eco28_RS00080 PF11975 Family 4 glycosyl hydrolase C-terminal domain Eco28_RS00080 PF02056 Family 4 glycosyl hydrolase Eco28_RS00085 PF12833 Helix-turn-helix domain Eco28_RS00085 PF02311 AraC-like ligand binding domain Eco28_RS00090 PF00474 Sodium:solute symporter family Eco28_RS00095 PF16347 Domain of unknown function (DUF4976) Eco28_RS00095 PF00884 Sulfatase Eco28_RS00105 PF02656 Domain of unknown function (DUF202) Eco28_RS00110 PF02656 Domain of unknown function (DUF202) Eco28_RS00120 PF07690 Major Facilitator Superfamily Eco28_RS00125 PF13939 Toxin TisB, type I toxin-antitoxin system Eco28_RS00145 PF08049 IlvB leader peptide Eco28_RS00150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Eco28_RS00150 PF00205 Thiamine pyrophosphate enzyme, central domain Eco28_RS00150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Eco28_RS00155 PF01842 ACT domain Eco28_RS00180 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS00180 PF00072 Response regulator receiver domain Eco28_RS00185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS00185 PF07730 Histidine kinase Eco28_RS00185 PF05231 MASE1 Eco28_RS00190 PF07690 Major Facilitator Superfamily Eco28_RS00195 PF07690 Major Facilitator Superfamily Eco28_RS00200 PF01979 Amidohydrolase family Eco28_RS00200 PF13382 Adenine deaminase C-terminal domain Eco28_RS00205 PF00860 Permease family Eco28_RS00210 PF06711 Protein of unknown function (DUF1198) Eco28_RS00230 PF07690 Major Facilitator Superfamily Eco28_RS00235 PF09134 Invasin, domain 3 Eco28_RS00235 PF11924 Inverse autotransporter, beta-domain Eco28_RS00235 PF02369 Bacterial Ig-like domain (group 1) Eco28_RS00240 PF09134 Invasin, domain 3 Eco28_RS00240 PF02369 Bacterial Ig-like domain (group 1) Eco28_RS00240 PF11924 Inverse autotransporter, beta-domain Eco28_RS00255 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS00260 PF06511 Type III secretion systems tip complex components Eco28_RS00280 PF07720 Tetratricopeptide repeat Eco28_RS00290 PF03180 NLPA lipoprotein Eco28_RS00295 PF00892 EamA-like transporter family Eco28_RS00300 PF07690 Major Facilitator Superfamily Eco28_RS00320 PF01055 Glycosyl hydrolases family 31 Eco28_RS00320 PF13802 Galactose mutarotase-like Eco28_RS00325 PF05170 AsmA family Eco28_RS00330 PF00860 Permease family Eco28_RS00335 PF03616 Sodium/glutamate symporter Eco28_RS00340 PF00270 DEAD/DEAH box helicase Eco28_RS00340 PF00271 Helicase conserved C-terminal domain Eco28_RS00340 PF17191 RecG wedge domain Eco28_RS00345 PF00588 SpoU rRNA Methylase family Eco28_RS00345 PF12105 SpoU, rRNA methylase, C-terminal Eco28_RS00350 PF13291 ACT domain Eco28_RS00350 PF02824 TGS domain Eco28_RS00350 PF04607 Region found in RelA / SpoT proteins Eco28_RS00355 PF01192 RNA polymerase Rpb6 Eco28_RS00360 PF00625 Guanylate kinase Eco28_RS00365 PF01653 NAD-dependent DNA ligase adenylation domain Eco28_RS00365 PF03120 NAD-dependent DNA ligase OB-fold domain Eco28_RS00370 PF03458 UPF0126 domain Eco28_RS00380 PF08340 Domain of unknown function (DUF1732) Eco28_RS00380 PF03755 YicC-like family, N-terminal region Eco28_RS00390 PF03725 3' exoribonuclease family, domain 2 Eco28_RS00390 PF01138 3' exoribonuclease family, domain 1 Eco28_RS00395 PF00156 Phosphoribosyl transferase domain Eco28_RS00400 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS00405 PF00692 dUTPase Eco28_RS00410 PF02441 Flavoprotein Eco28_RS00410 PF04127 DNA / pantothenate metabolism flavoprotein Eco28_RS00415 PF04002 RadC-like JAB domain Eco28_RS00420 PF00830 Ribosomal L28 family Eco28_RS00425 PF00471 Ribosomal protein L33 Eco28_RS00430 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Eco28_RS00430 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Eco28_RS00430 PF06827 Zinc finger found in FPG and IleRS Eco28_RS00435 PF01467 Cytidylyltransferase-like Eco28_RS00440 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) Eco28_RS00445 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Eco28_RS00450 PF00534 Glycosyl transferases group 1 Eco28_RS00450 PF13439 Glycosyltransferase Family 4 Eco28_RS00460 PF01501 Glycosyl transferase family 8 Eco28_RS00460 PF08437 Glycosyl transferase family 8 C-terminal Eco28_RS00465 PF08437 Glycosyl transferase family 8 C-terminal Eco28_RS00465 PF01501 Glycosyl transferase family 8 Eco28_RS00470 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) Eco28_RS00475 PF01501 Glycosyl transferase family 8 Eco28_RS00475 PF08437 Glycosyl transferase family 8 C-terminal Eco28_RS00485 PF04932 O-Antigen ligase Eco28_RS00490 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Eco28_RS00495 PF01075 Glycosyltransferase family 9 (heptosyltransferase) Eco28_RS00500 PF01370 NAD dependent epimerase/dehydratase family Eco28_RS00505 PF00155 Aminotransferase class I and II Eco28_RS00510 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS00510 PF00107 Zinc-binding dehydrogenase Eco28_RS00515 PF00535 Glycosyl transferase family 2 Eco28_RS00520 PF04748 Divergent polysaccharide deacetylase Eco28_RS00525 PF01551 Peptidase family M23 Eco28_RS00530 PF01676 Metalloenzyme superfamily Eco28_RS00530 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Eco28_RS00540 PF00581 Rhodanese-like domain Eco28_RS00545 PF00462 Glutaredoxin Eco28_RS00550 PF02556 Preprotein translocase subunit SecB Eco28_RS00555 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Eco28_RS00555 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Eco28_RS00560 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS00560 PF06426 Serine acetyltransferase, N-terminal Eco28_RS00565 PF00588 SpoU rRNA Methylase family Eco28_RS00570 PF01070 FMN-dependent dehydrogenase Eco28_RS00575 PF07729 FCD domain Eco28_RS00575 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS00580 PF02652 L-lactate permease Eco28_RS00595 PF11622 Protein of unknown function (DUF3251) Eco28_RS00600 PF10928 Protein of unknown function (DUF2810) Eco28_RS00610 PF05068 Mannitol repressor Eco28_RS00615 PF08125 Mannitol dehydrogenase C-terminal domain Eco28_RS00615 PF01232 Mannitol dehydrogenase Rossmann domain Eco28_RS00620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS00620 PF02378 Phosphotransferase system, EIIC Eco28_RS00620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS00625 PF11742 Protein of unknown function (DUF3302) Eco28_RS00630 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS00630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS00635 PF15596 Immunity protein 57 Eco28_RS00640 PF03527 RHS protein Eco28_RS00640 PF05593 RHS Repeat Eco28_RS00650 PF15631 NTF2 fold immunity protein Eco28_RS00655 PF03527 RHS protein Eco28_RS00655 PF05593 RHS Repeat Eco28_RS00655 PF14220 Domain of unknown function (DUF4329) Eco28_RS00660 PF13417 Glutathione S-transferase, N-terminal domain Eco28_RS00660 PF00043 Glutathione S-transferase, C-terminal domain Eco28_RS00665 PF03841 L-seryl-tRNA selenium transferase Eco28_RS00665 PF12390 Selenocysteine synthase N terminal Eco28_RS00670 PF03144 Elongation factor Tu domain 2 Eco28_RS00670 PF09106 Elongation factor SelB, winged helix Eco28_RS00670 PF09107 Elongation factor SelB, winged helix Eco28_RS00670 PF00009 Elongation factor Tu GTP binding domain Eco28_RS00675 PF00465 Iron-containing alcohol dehydrogenase Eco28_RS00685 PF00465 Iron-containing alcohol dehydrogenase Eco28_RS00695 PF00171 Aldehyde dehydrogenase family Eco28_RS00705 PF11742 Protein of unknown function (DUF3302) Eco28_RS00710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS00710 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS00715 PF03466 LysR substrate binding domain Eco28_RS00715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS00720 PF06629 MltA-interacting protein MipA Eco28_RS00725 PF07944 Beta-L-arabinofuranosidase, GH127 Eco28_RS00740 PF01614 Bacterial transcriptional regulator Eco28_RS00740 PF09339 IclR helix-turn-helix domain Eco28_RS00745 PF13247 4Fe-4S dicluster domain Eco28_RS00750 PF00155 Aminotransferase class I and II Eco28_RS00755 PF00128 Alpha amylase, catalytic domain Eco28_RS00760 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Eco28_RS00765 PF12833 Helix-turn-helix domain Eco28_RS00770 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS00775 PF00005 ABC transporter Eco28_RS00780 PF13407 Periplasmic binding protein domain Eco28_RS00790 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Eco28_RS00790 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Eco28_RS00795 PF05360 yiaA/B two helix domain Eco28_RS00800 PF05360 yiaA/B two helix domain Eco28_RS00805 PF01757 Acyltransferase family Eco28_RS00810 PF13983 YsaB-like lipoprotein Eco28_RS00815 PF02091 Glycyl-tRNA synthetase alpha subunit Eco28_RS00820 PF02092 Glycyl-tRNA synthetase beta subunit Eco28_RS00820 PF05746 DALR anticodon binding domain Eco28_RS00825 PF01848 Hok/gef family Eco28_RS00830 PF00313 'Cold-shock' DNA-binding domain Eco28_RS00835 PF01381 Helix-turn-helix Eco28_RS00840 PF11254 Protein of unknown function (DUF3053) Eco28_RS00845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Eco28_RS00845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS00850 PF13488 Glycine zipper Eco28_RS00850 PF00691 OmpA family Eco28_RS00855 PF18364 Molybdopterin oxidoreductase N-terminal domain Eco28_RS00855 PF01568 Molydopterin dinucleotide binding domain Eco28_RS00855 PF00384 Molybdopterin oxidoreductase Eco28_RS00860 PF00583 Acetyltransferase (GNAT) family Eco28_RS00865 PF03352 Methyladenine glycosylase Eco28_RS00870 PF03797 Autotransporter beta-domain Eco28_RS00880 PF07690 Major Facilitator Superfamily Eco28_RS00885 PF00419 Fimbrial protein Eco28_RS00890 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS00890 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS00895 PF13953 PapC C-terminal domain Eco28_RS00895 PF13954 PapC N-terminal domain Eco28_RS00895 PF00577 Outer membrane usher protein Eco28_RS00900 PF00419 Fimbrial protein Eco28_RS00905 PF00419 Fimbrial protein Eco28_RS00910 PF08019 Phosphoethanolamine transferase EptA/EptB Eco28_RS00910 PF00884 Sulfatase Eco28_RS00925 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS00935 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS00940 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS00940 PF12911 N-terminal TM domain of oligopeptide transport permease C Eco28_RS00945 PF00005 ABC transporter Eco28_RS00945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Eco28_RS00950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Eco28_RS00950 PF00005 ABC transporter Eco28_RS00955 PF03222 Tryptophan/tyrosine permease family Eco28_RS00965 PF13940 Toxin Ldr, type I toxin-antitoxin system Eco28_RS00975 PF13940 Toxin Ldr, type I toxin-antitoxin system Eco28_RS00985 PF13940 Toxin Ldr, type I toxin-antitoxin system Eco28_RS00990 PF11658 Cellulose biosynthesis protein BcsG Eco28_RS00995 PF11120 Cellulose biosynthesis protein BcsF Eco28_RS01000 PF10995 Cellulose biosynthesis GIL Eco28_RS01005 PF10945 Cellulose biosynthesis protein BcsR Eco28_RS01010 PF06564 Cellulose biosynthesis protein BcsQ Eco28_RS01015 PF07238 PilZ domain Eco28_RS01015 PF00535 Glycosyl transferase family 2 Eco28_RS01015 PF03552 Cellulose synthase Eco28_RS01020 PF03170 Bacterial cellulose synthase subunit Eco28_RS01025 PF01270 Glycosyl hydrolases family 8 Eco28_RS01030 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) Eco28_RS01035 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS01035 PF00672 HAMP domain Eco28_RS01035 PF00563 EAL domain Eco28_RS01035 PF17154 Gammaproteobacterial periplasmic sensor domain Eco28_RS01045 PF00375 Sodium:dicarboxylate symporter family Eco28_RS01055 PF05193 Peptidase M16 inactive domain Eco28_RS01055 PF00675 Insulinase (Peptidase family M16) Eco28_RS01060 PF00294 pfkB family carbohydrate kinase Eco28_RS01070 PF00563 EAL domain Eco28_RS01075 PF05170 AsmA family Eco28_RS01080 PF00083 Sugar (and other) transporter Eco28_RS01080 PF07690 Major Facilitator Superfamily Eco28_RS01085 PF03631 Virulence factor BrkB Eco28_RS01090 PF03466 LysR substrate binding domain Eco28_RS01090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS01095 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS01100 PF01204 Trehalase Eco28_RS01105 PF00034 Cytochrome c Eco28_RS01105 PF03150 Di-haem cytochrome c peroxidase Eco28_RS01105 PF14376 Haem-binding domain Eco28_RS01110 PF00282 Pyridoxal-dependent decarboxylase conserved domain Eco28_RS01115 PF12833 Helix-turn-helix domain Eco28_RS01120 PF12833 Helix-turn-helix domain Eco28_RS01130 PF00873 AcrB/AcrD/AcrF family Eco28_RS01135 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS01135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS01145 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS01150 PF03729 Short repeat of unknown function (DUF308) Eco28_RS01155 PF06411 HdeA/HdeB family Eco28_RS01160 PF06411 HdeA/HdeB family Eco28_RS01165 PF02308 MgtC family Eco28_RS01170 PF00005 ABC transporter Eco28_RS01175 PF01032 FecCD transport family Eco28_RS01190 PF01497 Periplasmic binding protein Eco28_RS01200 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS01200 PF00593 TonB dependent receptor Eco28_RS01205 PF05171 Haemin-degrading HemS.ChuX domain Eco28_RS01210 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS01220 PF03843 Outer membrane lipoprotein Slp family Eco28_RS01235 PF03960 ArsC family Eco28_RS01250 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS01250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Eco28_RS01255 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Eco28_RS01260 PF01432 Peptidase family M3 Eco28_RS01265 PF04445 Putative SAM-dependent methyltransferase Eco28_RS01270 PF00834 Ribulose-phosphate 3 epimerase family Eco28_RS01275 PF01380 SIS domain Eco28_RS01280 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS01285 PF00465 Iron-containing alcohol dehydrogenase Eco28_RS01290 PF00381 PTS HPr component phosphorylation site Eco28_RS01290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS01295 PF08125 Mannitol dehydrogenase C-terminal domain Eco28_RS01295 PF01232 Mannitol dehydrogenase Rossmann domain Eco28_RS01300 PF00455 DeoR C terminal sensor domain Eco28_RS01300 PF08220 DeoR-like helix-turn-helix domain Eco28_RS01305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS01310 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS01310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS01310 PF02378 Phosphotransferase system, EIIC Eco28_RS01315 PF00106 short chain dehydrogenase Eco28_RS01320 PF00854 POT family Eco28_RS01330 PF00582 Universal stress protein family Eco28_RS01335 PF10625 Universal stress protein B (UspB) Eco28_RS01340 PF01384 Phosphate transporter family Eco28_RS01350 PF10951 Protein of unknown function (DUF2776) Eco28_RS01370 PF13258 Domain of unknown function (DUF4049) Eco28_RS01385 PF13258 Domain of unknown function (DUF4049) Eco28_RS01390 PF13533 Biotin-lipoyl like Eco28_RS01395 PF00005 ABC transporter Eco28_RS01415 PF01402 Ribbon-helix-helix protein, copG family Eco28_RS01415 PF08753 NikR C terminal nickel binding domain Eco28_RS01420 PF00005 ABC transporter Eco28_RS01425 PF00005 ABC transporter Eco28_RS01430 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS01435 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS01440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS01445 PF01648 4'-phosphopantetheinyl transferase superfamily Eco28_RS01450 PF00109 Beta-ketoacyl synthase, N-terminal domain Eco28_RS01450 PF02801 Beta-ketoacyl synthase, C-terminal domain Eco28_RS01465 PF02801 Beta-ketoacyl synthase, C-terminal domain Eco28_RS01465 PF00109 Beta-ketoacyl synthase, N-terminal domain Eco28_RS01490 PF00535 Glycosyl transferase family 2 Eco28_RS01500 PF00501 AMP-binding enzyme Eco28_RS01500 PF00975 Thioesterase domain Eco28_RS01500 PF00550 Phosphopantetheine attachment site Eco28_RS01500 PF00668 Condensation domain Eco28_RS01500 PF13193 AMP-binding enzyme C-terminal domain Eco28_RS01510 PF00550 Phosphopantetheine attachment site Eco28_RS01515 PF00550 Phosphopantetheine attachment site Eco28_RS01520 PF01553 Acyltransferase Eco28_RS01530 PF00891 O-methyltransferase domain Eco28_RS01540 PF01594 AI-2E family transporter Eco28_RS01545 PF07690 Major Facilitator Superfamily Eco28_RS01550 PF08786 DcrB Eco28_RS01555 PF02592 Putative vitamin uptake transporter Eco28_RS01560 PF01206 Sulfurtransferase TusA Eco28_RS01570 PF00403 Heavy-metal-associated domain Eco28_RS01575 PF07947 YhhN family Eco28_RS01580 PF10694 Protein of unknown function (DUF2500) Eco28_RS01585 PF06611 Protein of unknown function (DUF1145) Eco28_RS01595 PF02881 SRP54-type protein, helical bundle domain Eco28_RS01595 PF00448 SRP54-type protein, GTPase domain Eco28_RS01600 PF00005 ABC transporter Eco28_RS01605 PF02687 FtsX-like permease family Eco28_RS01605 PF18075 FtsX extracellular domain Eco28_RS01610 PF04545 Sigma-70, region 4 Eco28_RS01610 PF04542 Sigma-70 region 2 Eco28_RS01615 PF13458 Periplasmic binding protein Eco28_RS01630 PF12568 Acetyltransferase (GNAT) domain, PanZ Eco28_RS01640 PF13458 Periplasmic binding protein Eco28_RS01645 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS01650 PF11862 Domain of unknown function (DUF3382) Eco28_RS01650 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS01655 PF00005 ABC transporter Eco28_RS01655 PF12399 Branched-chain amino acid ATP-binding cassette transporter Eco28_RS01660 PF00005 ABC transporter Eco28_RS01670 PF13416 Bacterial extracellular solute-binding protein Eco28_RS01675 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS01680 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS01685 PF00005 ABC transporter Eco28_RS01685 PF17912 MalK OB fold domain Eco28_RS01690 PF03009 Glycerophosphoryl diester phosphodiesterase family Eco28_RS01695 PF10956 Protein of unknown function (DUF2756) Eco28_RS01715 PF00583 Acetyltransferase (GNAT) family Eco28_RS01725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Eco28_RS01725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Eco28_RS01730 PF02678 Pirin Eco28_RS01730 PF17954 Quercetinase C-terminal cupin domain Eco28_RS01735 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Eco28_RS01735 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS01740 PF01202 Shikimate kinase Eco28_RS01745 PF02447 GntP family permease Eco28_RS01750 PF00271 Helicase conserved C-terminal domain Eco28_RS01750 PF00270 DEAD/DEAH box helicase Eco28_RS01750 PF09382 RQC domain Eco28_RS01750 PF16124 RecQ zinc-binding Eco28_RS01750 PF00570 HRDC domain Eco28_RS01760 PF01914 MarC family integral membrane protein Eco28_RS01765 PF01118 Semialdehyde dehydrogenase, NAD binding domain Eco28_RS01765 PF02774 Semialdehyde dehydrogenase, dimerisation domain Eco28_RS01770 PF02806 Alpha amylase, C-terminal all-beta domain Eco28_RS01770 PF00128 Alpha amylase, catalytic domain Eco28_RS01770 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Eco28_RS01775 PF00128 Alpha amylase, catalytic domain Eco28_RS01775 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Eco28_RS01775 PF18390 Glycogen debranching enzyme C-terminal domain Eco28_RS01780 PF00483 Nucleotidyl transferase Eco28_RS01785 PF00534 Glycosyl transferases group 1 Eco28_RS01785 PF08323 Starch synthase catalytic domain Eco28_RS01790 PF00343 Carbohydrate phosphorylase Eco28_RS01825 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Eco28_RS01825 PF01266 FAD dependent oxidoreductase Eco28_RS01830 PF00581 Rhodanese-like domain Eco28_RS01835 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease Eco28_RS01835 PF01694 Rhomboid family Eco28_RS01840 PF00455 DeoR C terminal sensor domain Eco28_RS01840 PF08220 DeoR-like helix-turn-helix domain Eco28_RS01845 PF00158 Sigma-54 interaction domain Eco28_RS01845 PF06956 Regulator of RNA terminal phosphate cyclase Eco28_RS01855 PF00158 Sigma-54 interaction domain Eco28_RS01855 PF06956 Regulator of RNA terminal phosphate cyclase Eco28_RS01860 PF01139 tRNA-splicing ligase RtcB Eco28_RS01865 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain Eco28_RS01865 PF01137 RNA 3'-terminal phosphate cyclase Eco28_RS01870 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS01870 PF17874 MalT-like TPR region Eco28_RS01875 PF00343 Carbohydrate phosphorylase Eco28_RS01880 PF02446 4-alpha-glucanotransferase Eco28_RS01885 PF02447 GntP family permease Eco28_RS01890 PF01521 Iron-sulphur cluster biosynthesis Eco28_RS01890 PF01106 NifU-like domain Eco28_RS01895 PF00156 Phosphoribosyl transferase domain Eco28_RS01900 PF00561 alpha/beta hydrolase fold Eco28_RS01905 PF04754 Putative transposase, YhgA-like Eco28_RS01915 PF09012 FeoC like transcriptional regulator Eco28_RS01920 PF02421 Ferrous iron transport protein B Eco28_RS01920 PF07670 Nucleoside recognition Eco28_RS01920 PF17910 FeoB cytosolic helical domain Eco28_RS01920 PF07664 Ferrous iron transport protein B C terminus Eco28_RS01925 PF04023 FeoA domain Eco28_RS01935 PF00575 S1 RNA binding domain Eco28_RS01935 PF09371 Tex-like protein N-terminal domain Eco28_RS01935 PF16921 Tex protein YqgF-like domain Eco28_RS01935 PF17674 HHH domain Eco28_RS01940 PF01272 Transcription elongation factor, GreA/GreB, C-term Eco28_RS01940 PF03449 Transcription elongation factor, N-terminal Eco28_RS01950 PF00072 Response regulator receiver domain Eco28_RS01950 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS01955 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS01955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS01955 PF00672 HAMP domain Eco28_RS01960 PF01293 Phosphoenolpyruvate carboxykinase Eco28_RS01970 PF13687 Domain of unknown function (DUF4153) Eco28_RS01975 PF01430 Hsp33 protein Eco28_RS01980 PF01479 S4 domain Eco28_RS01985 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS01990 PF07095 Intracellular growth attenuator protein IgaA Eco28_RS01995 PF00293 NUDIX domain Eco28_RS02000 PF00905 Penicillin binding protein transpeptidase domain Eco28_RS02000 PF00912 Transglycosylase Eco28_RS02000 PF17092 Penicillin-binding protein OB-like domain Eco28_RS02010 PF05137 Fimbrial assembly protein (PilN) Eco28_RS02020 PF10748 DNA utilization proteins HofP Eco28_RS02025 PF00263 Bacterial type II and III secretion system protein Eco28_RS02025 PF03958 Bacterial type II/III secretion system short domain Eco28_RS02030 PF01202 Shikimate kinase Eco28_RS02035 PF01761 3-dehydroquinate synthase Eco28_RS02040 PF05036 Sporulation related domain Eco28_RS02045 PF02086 D12 class N6 adenine-specific DNA methyltransferase Eco28_RS02050 PF00834 Ribulose-phosphate 3 epimerase family Eco28_RS02055 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS02060 PF00579 tRNA synthetases class I (W and Y) Eco28_RS02065 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS02065 PF07702 UTRA domain Eco28_RS02070 PF00294 pfkB family carbohydrate kinase Eco28_RS02075 PF01261 Xylose isomerase-like TIM barrel Eco28_RS02085 PF01380 SIS domain Eco28_RS02090 PF13520 Amino acid permease Eco28_RS02095 PF13978 Protein of unknown function (DUF4223) Eco28_RS02100 PF10414 Sirohaem synthase dimerisation region Eco28_RS02100 PF14824 Sirohaem biosynthesis protein central Eco28_RS02100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Eco28_RS02105 PF01226 Formate/nitrite transporter Eco28_RS02110 PF13806 Rieske-like [2Fe-2S] domain Eco28_RS02115 PF18267 Rubredoxin NAD+ reductase C-terminal domain Eco28_RS02115 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS02115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Eco28_RS02115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Eco28_RS02115 PF04324 BFD-like [2Fe-2S] binding domain Eco28_RS02120 PF07690 Major Facilitator Superfamily Eco28_RS02125 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Eco28_RS02130 PF10832 Protein of unknown function (DUF2559) Eco28_RS02135 PF02661 Fic/DOC family Eco28_RS02140 PF00117 Glutamine amidotransferase class-I Eco28_RS02145 PF00202 Aminotransferase class-III Eco28_RS02150 PF12805 FUSC-like inner membrane protein yccS Eco28_RS02155 PF13545 Crp-like helix-turn-helix domain Eco28_RS02155 PF00027 Cyclic nucleotide-binding domain Eco28_RS02165 PF02566 OsmC-like protein Eco28_RS02170 PF00485 Phosphoribulokinase / Uridine kinase family Eco28_RS02175 PF06794 Uncharacterised protein family (UPF0270) Eco28_RS02180 PF00561 alpha/beta hydrolase fold Eco28_RS02185 PF00005 ABC transporter Eco28_RS02185 PF12848 ABC transporter Eco28_RS02195 PF02525 Flavodoxin-like fold Eco28_RS02200 PF00999 Sodium/hydrogen exchanger family Eco28_RS02200 PF02254 TrkA-N domain Eco28_RS02205 PF09526 Probable metal-binding protein (DUF2387) Eco28_RS02210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Eco28_RS02215 PF04102 SlyX Eco28_RS02220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Eco28_RS02220 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Eco28_RS02225 PF13309 HTH domain Eco28_RS02225 PF08348 YheO-like PAS domain Eco28_RS02230 PF02635 DsrE/DsrF-like family Eco28_RS02235 PF02635 DsrE/DsrF-like family Eco28_RS02240 PF04077 DsrH like protein Eco28_RS02245 PF00164 Ribosomal protein S12/S23 Eco28_RS02250 PF00177 Ribosomal protein S7p/S5e Eco28_RS02255 PF03144 Elongation factor Tu domain 2 Eco28_RS02255 PF14492 Elongation Factor G, domain II Eco28_RS02255 PF03764 Elongation factor G, domain IV Eco28_RS02255 PF00679 Elongation factor G C-terminus Eco28_RS02255 PF00009 Elongation factor Tu GTP binding domain Eco28_RS02260 PF03143 Elongation factor Tu C-terminal domain Eco28_RS02260 PF03144 Elongation factor Tu domain 2 Eco28_RS02260 PF00009 Elongation factor Tu GTP binding domain Eco28_RS02270 PF04324 BFD-like [2Fe-2S] binding domain Eco28_RS02275 PF00210 Ferritin-like domain Eco28_RS02280 PF01478 Type IV leader peptidase family Eco28_RS02290 PF00338 Ribosomal protein S10p/S20e Eco28_RS02295 PF00297 Ribosomal protein L3 Eco28_RS02300 PF00573 Ribosomal protein L4/L1 family Eco28_RS02305 PF00276 Ribosomal protein L23 Eco28_RS02310 PF03947 Ribosomal Proteins L2, C-terminal domain Eco28_RS02310 PF00181 Ribosomal Proteins L2, RNA binding domain Eco28_RS02315 PF00203 Ribosomal protein S19 Eco28_RS02320 PF00237 Ribosomal protein L22p/L17e Eco28_RS02325 PF00189 Ribosomal protein S3, C-terminal domain Eco28_RS02325 PF07650 KH domain Eco28_RS02330 PF00252 Ribosomal protein L16p/L10e Eco28_RS02335 PF00831 Ribosomal L29 protein Eco28_RS02340 PF00366 Ribosomal protein S17 Eco28_RS02345 PF00238 Ribosomal protein L14p/L23e Eco28_RS02350 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Eco28_RS02350 PF00467 KOW motif Eco28_RS02355 PF00281 Ribosomal protein L5 Eco28_RS02355 PF00673 ribosomal L5P family C-terminus Eco28_RS02360 PF00253 Ribosomal protein S14p/S29e Eco28_RS02365 PF00410 Ribosomal protein S8 Eco28_RS02370 PF00347 Ribosomal protein L6 Eco28_RS02375 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Eco28_RS02380 PF00333 Ribosomal protein S5, N-terminal domain Eco28_RS02380 PF03719 Ribosomal protein S5, C-terminal domain Eco28_RS02385 PF00327 Ribosomal protein L30p/L7e Eco28_RS02390 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Eco28_RS02395 PF00344 SecY translocase Eco28_RS02400 PF00444 Ribosomal protein L36 Eco28_RS02405 PF00416 Ribosomal protein S13/S18 Eco28_RS02410 PF00411 Ribosomal protein S11 Eco28_RS02415 PF00163 Ribosomal protein S4/S9 N-terminal domain Eco28_RS02415 PF01479 S4 domain Eco28_RS02420 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Eco28_RS02420 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Eco28_RS02420 PF01000 RNA polymerase Rpb3/RpoA insert domain Eco28_RS02425 PF01196 Ribosomal protein L17 Eco28_RS02430 PF09350 Domain of unknown function (DUF1992) Eco28_RS02435 PF13411 MerR HTH family regulatory protein Eco28_RS02440 PF03889 Alternative ribosome-rescue factor A Eco28_RS02445 PF01741 Large-conductance mechanosensitive channel, MscL Eco28_RS02450 PF02080 TrkA-C domain Eco28_RS02450 PF02254 TrkA-N domain Eco28_RS02455 PF01189 16S rRNA methyltransferase RsmB/F Eco28_RS02455 PF01029 NusB family Eco28_RS02460 PF00551 Formyl transferase Eco28_RS02460 PF02911 Formyl transferase, C-terminal domain Eco28_RS02465 PF01327 Polypeptide deformylase Eco28_RS02470 PF02481 DNA recombination-mediator protein A Eco28_RS02470 PF17782 DprA winged helix domain Eco28_RS02475 PF04361 Protein of unknown function (DUF494) Eco28_RS02480 PF01396 Topoisomerase DNA binding C4 zinc finger Eco28_RS02485 PF01300 Telomere recombination Eco28_RS02490 PF08501 Shikimate dehydrogenase substrate binding domain Eco28_RS02490 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Eco28_RS02490 PF01488 Shikimate / quinate 5-dehydrogenase Eco28_RS02495 PF07369 Protein of unknown function (DUF1488) Eco28_RS02500 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS02540 PF00005 ABC transporter Eco28_RS02545 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS02550 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS02555 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS02570 PF00873 AcrB/AcrD/AcrF family Eco28_RS02575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS02575 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS02585 PF08361 MAATS-type transcriptional repressor, C-terminal region Eco28_RS02585 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS02590 PF10831 Protein of unknown function (DUF2556) Eco28_RS02595 PF01555 DNA methylase Eco28_RS02600 PF02954 Bacterial regulatory protein, Fis family Eco28_RS02605 PF01207 Dihydrouridine synthase (Dus) Eco28_RS02615 PF00474 Sodium:solute symporter family Eco28_RS02620 PF06196 Protein of unknown function (DUF997) Eco28_RS02625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Eco28_RS02625 PF02785 Biotin carboxylase C-terminal domain Eco28_RS02625 PF00289 Biotin carboxylase, N-terminal domain Eco28_RS02630 PF00364 Biotin-requiring enzyme Eco28_RS02640 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS02640 PF00107 Zinc-binding dehydrogenase Eco28_RS02645 PF17157 Gammaproteobacterial periplasmic sensor domain Eco28_RS02645 PF00563 EAL domain Eco28_RS02645 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS02665 PF04085 rod shape-determining protein MreC Eco28_RS02670 PF04093 rod shape-determining protein MreD Eco28_RS02675 PF02545 Maf-like protein Eco28_RS02680 PF00575 S1 RNA binding domain Eco28_RS02680 PF10150 Ribonuclease E/G family Eco28_RS02685 PF13502 AsmA-like C-terminal region Eco28_RS02685 PF13116 Protein of unknown function Eco28_RS02690 PF01523 Putative modulator of DNA gyrase Eco28_RS02695 PF03466 LysR substrate binding domain Eco28_RS02695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS02700 PF07869 Protein of unknown function (DUF1656) Eco28_RS02705 PF13533 Biotin-lipoyl like Eco28_RS02710 PF04632 Fusaric acid resistance protein family Eco28_RS02715 PF01337 Barstar (barnase inhibitor) Eco28_RS02720 PF07338 Protein of unknown function (DUF1471) Eco28_RS02725 PF01316 Arginine repressor, DNA binding domain Eco28_RS02725 PF02863 Arginine repressor, C-terminal domain Eco28_RS02730 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Eco28_RS02730 PF00056 lactate/malate dehydrogenase, NAD binding domain Eco28_RS02735 PF13180 PDZ domain Eco28_RS02740 PF00595 PDZ domain Eco28_RS02740 PF13180 PDZ domain Eco28_RS02745 PF06295 Protein of unknown function (DUF1043) Eco28_RS02750 PF03969 AFG1-like ATPase Eco28_RS02755 PF00572 Ribosomal protein L13 Eco28_RS02760 PF00380 Ribosomal protein S9/S16 Eco28_RS02775 PF02798 Glutathione S-transferase, N-terminal domain Eco28_RS02775 PF00043 Glutathione S-transferase, C-terminal domain Eco28_RS02780 PF04386 Stringent starvation protein B Eco28_RS02785 PF03606 C4-dicarboxylate anaerobic carrier Eco28_RS02795 PF07729 FCD domain Eco28_RS02795 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS02800 PF00701 Dihydrodipicolinate synthetase family Eco28_RS02805 PF07690 Major Facilitator Superfamily Eco28_RS02810 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase Eco28_RS02815 PF00480 ROK family Eco28_RS02820 PF04074 YhcH/YjgK/YiaL Eco28_RS02825 PF06250 YhcG PDDEXK nuclease domain Eco28_RS02825 PF17761 DUF1016 N-terminal domain Eco28_RS02830 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Eco28_RS02830 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS02835 PF01645 Conserved region in glutamate synthase Eco28_RS02835 PF04898 Glutamate synthase central domain Eco28_RS02835 PF01493 GXGXG motif Eco28_RS02835 PF00310 Glutamine amidotransferases class-II Eco28_RS02850 PF16199 Radical_SAM C-terminal domain Eco28_RS02850 PF04055 Radical SAM superfamily Eco28_RS02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS02855 PF00072 Response regulator receiver domain Eco28_RS02855 PF01627 Hpt domain Eco28_RS02855 PF18415 Histidine kinase receptor ArcB trans-membrane domain Eco28_RS02855 PF00989 PAS fold Eco28_RS02855 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS02865 PF00912 Transglycosylase Eco28_RS02870 PF10707 PhoP regulatory network protein YrbL Eco28_RS02875 PF00381 PTS HPr component phosphorylation site Eco28_RS02880 PF03668 P-loop ATPase protein family Eco28_RS02885 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS02890 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Eco28_RS02895 PF04552 Sigma-54, DNA binding domain Eco28_RS02895 PF04963 Sigma-54 factor, core binding domain Eco28_RS02895 PF00309 Sigma-54 factor, Activator interacting domain (AID) Eco28_RS02900 PF12399 Branched-chain amino acid ATP-binding cassette transporter Eco28_RS02900 PF00005 ABC transporter Eco28_RS02905 PF03968 OstA-like protein Eco28_RS02910 PF06835 Lipopolysaccharide-assembly, LptC-related Eco28_RS02920 PF01380 SIS domain Eco28_RS02920 PF00571 CBS domain Eco28_RS02925 PF01699 Sodium/calcium exchanger protein Eco28_RS02930 PF00005 ABC transporter Eco28_RS02935 PF02405 Permease MlaE Eco28_RS02940 PF02470 MlaD protein Eco28_RS02945 PF05494 MlaC protein Eco28_RS02950 PF13466 STAS domain Eco28_RS02955 PF01722 BolA-like protein Eco28_RS02960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Eco28_RS02965 PF13693 Winged helix-turn-helix DNA-binding Eco28_RS02970 PF00348 Polyprenyl synthetase Eco28_RS02975 PF00829 Ribosomal prokaryotic L21 protein Eco28_RS02980 PF01016 Ribosomal L27 protein Eco28_RS02985 PF00892 EamA-like transporter family Eco28_RS02990 PF01926 50S ribosome-binding GTPase Eco28_RS02990 PF01018 GTP1/OBG Eco28_RS02995 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family Eco28_RS03000 PF01272 Transcription elongation factor, GreA/GreB, C-term Eco28_RS03000 PF03449 Transcription elongation factor, N-terminal Eco28_RS03005 PF01985 CRS1 / YhbY (CRM) domain Eco28_RS03010 PF01728 FtsJ-like methyltransferase Eco28_RS03015 PF01434 Peptidase family M41 Eco28_RS03015 PF00004 ATPase family associated with various cellular activities (AAA) Eco28_RS03015 PF06480 FtsH Extracellular Eco28_RS03015 PF17862 AAA+ lid domain Eco28_RS03020 PF00809 Pterin binding enzyme Eco28_RS03025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Eco28_RS03025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Eco28_RS03025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Eco28_RS03025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Eco28_RS03030 PF03840 Preprotein translocase SecG subunit Eco28_RS03045 PF00884 Sulfatase Eco28_RS03050 PF00764 Arginosuccinate synthase Eco28_RS03060 PF17384 RimP C-terminal SH3 domain Eco28_RS03060 PF02576 RimP N-terminal domain Eco28_RS03065 PF00575 S1 RNA binding domain Eco28_RS03065 PF08529 NusA N-terminal domain Eco28_RS03065 PF13184 NusA-like KH domain Eco28_RS03070 PF04760 Translation initiation factor IF-2, N-terminal region Eco28_RS03070 PF08364 Bacterial translation initiation factor IF-2 associated region Eco28_RS03070 PF11987 Translation-initiation factor 2 Eco28_RS03070 PF00009 Elongation factor Tu GTP binding domain Eco28_RS03075 PF02033 Ribosome-binding factor A Eco28_RS03080 PF16198 tRNA pseudouridylate synthase B C-terminal domain Eco28_RS03080 PF01509 TruB family pseudouridylate synthase (N terminal domain) Eco28_RS03080 PF09157 Pseudouridine synthase II TruB, C-terminal Eco28_RS03085 PF00312 Ribosomal protein S15 Eco28_RS03090 PF03725 3' exoribonuclease family, domain 2 Eco28_RS03090 PF00575 S1 RNA binding domain Eco28_RS03090 PF01138 3' exoribonuclease family, domain 1 Eco28_RS03090 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Eco28_RS03090 PF00013 KH domain Eco28_RS03095 PF07719 Tetratricopeptide repeat Eco28_RS03095 PF13181 Tetratricopeptide repeat Eco28_RS03105 PF12343 Cold shock protein DEAD box A Eco28_RS03105 PF03880 DbpA RNA binding domain Eco28_RS03105 PF00271 Helicase conserved C-terminal domain Eco28_RS03105 PF00270 DEAD/DEAH box helicase Eco28_RS03110 PF03222 Tryptophan/tyrosine permease family Eco28_RS03115 PF00296 Luciferase-like monooxygenase Eco28_RS03120 PF01136 Peptidase family U32 Eco28_RS03125 PF01136 Peptidase family U32 Eco28_RS03130 PF02036 SCP-2 sterol transfer family Eco28_RS03135 PF13508 Acetyltransferase (GNAT) domain Eco28_RS03140 PF01541 GIY-YIG catalytic domain Eco28_RS03150 PF01965 DJ-1/PfpI family Eco28_RS03155 PF13460 NAD(P)H-binding Eco28_RS03160 PF03773 Predicted permease Eco28_RS03165 PF04972 BON domain Eco28_RS03170 PF13580 SIS domain Eco28_RS03175 PF02021 Uncharacterised protein family UPF0102 Eco28_RS03180 PF04348 LppC putative lipoprotein Eco28_RS03185 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Eco28_RS03190 PF00419 Fimbrial protein Eco28_RS03195 PF13954 PapC N-terminal domain Eco28_RS03195 PF13953 PapC C-terminal domain Eco28_RS03195 PF00577 Outer membrane usher protein Eco28_RS03200 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS03200 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS03205 PF00419 Fimbrial protein Eco28_RS03210 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Eco28_RS03215 PF03613 PTS system mannose/fructose/sorbose family IID component Eco28_RS03220 PF03609 PTS system sorbose-specific iic component Eco28_RS03225 PF03830 PTS system sorbose subfamily IIB component Eco28_RS03230 PF01116 Fructose-bisphosphate aldolase class-II Eco28_RS03235 PF01380 SIS domain Eco28_RS03240 PF01979 Amidohydrolase family Eco28_RS03245 PF03610 PTS system fructose IIA component Eco28_RS03250 PF03613 PTS system mannose/fructose/sorbose family IID component Eco28_RS03255 PF03609 PTS system sorbose-specific iic component Eco28_RS03260 PF03830 PTS system sorbose subfamily IIB component Eco28_RS03265 PF08013 Tagatose 6 phosphate kinase Eco28_RS03275 PF00455 DeoR C terminal sensor domain Eco28_RS03275 PF08220 DeoR-like helix-turn-helix domain Eco28_RS03280 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system Eco28_RS03285 PF15937 prlF antitoxin for toxin YhaV_toxin Eco28_RS03290 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Eco28_RS03290 PF08666 SAF domain Eco28_RS03295 PF07690 Major Facilitator Superfamily Eco28_RS03300 PF03328 HpcH/HpaI aldolase/citrate lyase family Eco28_RS03305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Eco28_RS03305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Eco28_RS03310 PF02595 Glycerate kinase family Eco28_RS03335 PF03466 LysR substrate binding domain Eco28_RS03335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS03340 PF00291 Pyridoxal-phosphate dependent enzyme Eco28_RS03345 PF03222 Tryptophan/tyrosine permease family Eco28_RS03350 PF00871 Acetokinase family Eco28_RS03355 PF02901 Pyruvate formate lyase-like Eco28_RS03355 PF01228 Glycine radical Eco28_RS03360 PF01042 Endoribonuclease L-PSP Eco28_RS03365 PF03315 Serine dehydratase beta chain Eco28_RS03365 PF03313 Serine dehydratase alpha chain Eco28_RS03375 PF03313 Serine dehydratase alpha chain Eco28_RS03385 PF17954 Quercetinase C-terminal cupin domain Eco28_RS03385 PF02678 Pirin Eco28_RS03390 PF03466 LysR substrate binding domain Eco28_RS03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS03400 PF05656 Protein of unknown function (DUF805) Eco28_RS03405 PF05656 Protein of unknown function (DUF805) Eco28_RS03410 PF13409 Glutathione S-transferase, N-terminal domain Eco28_RS03415 PF07681 DoxX Eco28_RS03420 PF13997 YqjK-like protein Eco28_RS03425 PF07332 Putative Actinobacterial Holin-X, holin superfamily III Eco28_RS03430 PF05957 Bacterial protein of unknown function (DUF883) Eco28_RS03435 PF06476 Protein of unknown function (DUF1090) Eco28_RS03440 PF13721 SecD export protein N-terminal TM region Eco28_RS03445 PF09335 SNARE associated Golgi protein Eco28_RS03450 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS03450 PF07729 FCD domain Eco28_RS03455 PF07690 Major Facilitator Superfamily Eco28_RS03460 PF02614 Glucuronate isomerase Eco28_RS03465 PF08666 SAF domain Eco28_RS03465 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Eco28_RS03470 PF10688 Bacterial inner membrane protein Eco28_RS03475 PF00375 Sodium:dicarboxylate symporter family Eco28_RS03485 PF03741 Integral membrane protein TerC family Eco28_RS03490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Eco28_RS03495 PF02698 DUF218 domain Eco28_RS03500 PF01863 Protein of unknown function DUF45 Eco28_RS03505 PF05175 Methyltransferase small domain Eco28_RS03515 PF01381 Helix-turn-helix Eco28_RS03520 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Eco28_RS03520 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS03530 PF01204 Trehalase Eco28_RS03540 PF13520 Amino acid permease Eco28_RS03545 PF04074 YhcH/YjgK/YiaL Eco28_RS03550 PF02929 Beta galactosidase small chain Eco28_RS03550 PF02837 Glycosyl hydrolases family 2, sugar binding domain Eco28_RS03550 PF00703 Glycosyl hydrolases family 2 Eco28_RS03550 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Eco28_RS03550 PF16353 Domain of unknown function(DUF4981) Eco28_RS03555 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS03565 PF01588 Putative tRNA binding domain Eco28_RS03570 PF00202 Aminotransferase class-III Eco28_RS03580 PF08447 PAS fold Eco28_RS03580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS03585 PF03551 Transcriptional regulator PadR-like family Eco28_RS03595 PF04954 Siderophore-interacting protein Eco28_RS03595 PF08021 Siderophore-interacting FAD-binding domain Eco28_RS03605 PF03167 Uracil DNA glycosylase superfamily Eco28_RS03610 PF04546 Sigma-70, non-essential region Eco28_RS03610 PF04545 Sigma-70, region 4 Eco28_RS03610 PF04539 Sigma-70 region 3 Eco28_RS03610 PF00140 Sigma-70 factor, region 1.2 Eco28_RS03610 PF03979 Sigma-70 factor, region 1.1 Eco28_RS03610 PF04542 Sigma-70 region 2 Eco28_RS03620 PF08278 DNA primase DnaG DnaB-binding Eco28_RS03620 PF01807 CHC2 zinc finger Eco28_RS03620 PF10410 DnaB-helicase binding domain of primase Eco28_RS03620 PF08275 DNA primase catalytic core, N-terminal domain Eco28_RS03625 PF01165 Ribosomal protein S21 Eco28_RS03635 PF00814 Glycoprotease family Eco28_RS03640 PF00939 Sodium:sulfate symporter transmembrane region Eco28_RS03645 PF05683 Fumarase C-terminus Eco28_RS03650 PF05681 Fumarate hydratase (Fumerase) Eco28_RS03660 PF03466 LysR substrate binding domain Eco28_RS03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS03665 PF02660 Glycerol-3-phosphate acyltransferase Eco28_RS03670 PF02152 Dihydroneopterin aldolase Eco28_RS03675 PF02673 Bacitracin resistance protein BacA Eco28_RS03680 PF01743 Poly A polymerase head domain Eco28_RS03680 PF01966 HD domain Eco28_RS03680 PF12627 Probable RNA and SrmB- binding site of polymerase A Eco28_RS03685 PF08239 Bacterial SH3 domain Eco28_RS03695 PF01928 CYTH domain Eco28_RS03700 PF08335 GlnD PII-uridylyltransferase Eco28_RS03700 PF03710 Glutamate-ammonia ligase adenylyltransferase Eco28_RS03705 PF01467 Cytidylyltransferase-like Eco28_RS03705 PF00294 pfkB family carbohydrate kinase Eco28_RS03715 PF15975 Flotillin Eco28_RS03715 PF01145 SPFH domain / Band 7 family Eco28_RS03720 PF07290 Protein of unknown function (DUF1449) Eco28_RS03725 PF08971 Glycogen synthesis protein Eco28_RS03730 PF04380 Membrane fusogenic activity Eco28_RS03735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Eco28_RS03745 PF02535 ZIP Zinc transporter Eco28_RS03750 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Eco28_RS03755 PF03738 Glutathionylspermidine synthase preATP-grasp Eco28_RS03760 PF06693 Protein of unknown function (DUF1190) Eco28_RS03770 PF02321 Outer membrane efflux protein Eco28_RS03775 PF00293 NUDIX domain Eco28_RS03780 PF06853 Protein of unknown function (DUF1249) Eco28_RS03785 PF00149 Calcineurin-like phosphoesterase Eco28_RS03790 PF05728 Uncharacterised protein family (UPF0227) Eco28_RS03795 PF01751 Toprim domain Eco28_RS03795 PF00986 DNA gyrase B subunit, carboxyl terminus Eco28_RS03795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS03795 PF00204 DNA gyrase B Eco28_RS03800 PF03992 Antibiotic biosynthesis monooxygenase Eco28_RS03805 PF02525 Flavodoxin-like fold Eco28_RS03810 PF08521 Two-component sensor kinase N-terminal Eco28_RS03810 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS03810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS03815 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS03815 PF00072 Response regulator receiver domain Eco28_RS03820 PF04076 Bacterial OB fold (BOF) protein Eco28_RS03825 PF06445 GyrI-like small molecule binding domain Eco28_RS03830 PF15723 Motility quorum-sensing regulator, toxin of MqsA Eco28_RS03835 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA Eco28_RS03840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS03845 PF00521 DNA gyrase/topoisomerase IV, subunit A Eco28_RS03845 PF03989 DNA gyrase C-terminal domain, beta-propeller Eco28_RS03850 PF01553 Acyltransferase Eco28_RS03855 PF07731 Multicopper oxidase Eco28_RS03855 PF07732 Multicopper oxidase Eco28_RS03855 PF00394 Multicopper oxidase Eco28_RS03860 PF04055 Radical SAM superfamily Eco28_RS03860 PF11842 Domain of unknown function (DUF3362) Eco28_RS03860 PF08497 Radical SAM N-terminal Eco28_RS03865 PF04728 Lipoprotein leucine-zipper Eco28_RS03870 PF12883 Protein of unknown function (DUF3828) Eco28_RS03875 PF00248 Aldo/keto reductase family Eco28_RS03880 PF00465 Iron-containing alcohol dehydrogenase Eco28_RS03885 PF06719 AraC-type transcriptional regulator N-terminus Eco28_RS03885 PF12833 Helix-turn-helix domain Eco28_RS03890 PF09335 SNARE associated Golgi protein Eco28_RS03895 PF01053 Cys/Met metabolism PLP-dependent enzyme Eco28_RS03905 PF01618 MotA/TolQ/ExbB proton channel family Eco28_RS03910 PF02472 Biopolymer transport protein ExbD/TolR Eco28_RS03920 PF03350 Uncharacterized protein family, UPF0114 Eco28_RS03925 PF00248 Aldo/keto reductase family Eco28_RS03930 PF01738 Dienelactone hydrolase family Eco28_RS03935 PF11115 Protein of unknown function (DUF2623) Eco28_RS03945 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Eco28_RS03945 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Eco28_RS03950 PF13247 4Fe-4S dicluster domain Eco28_RS03955 PF03916 Polysulphide reductase, NrfD Eco28_RS03960 PF00374 Nickel-dependent hydrogenase Eco28_RS03970 PF00374 Nickel-dependent hydrogenase Eco28_RS03975 PF01750 Hydrogenase maturation protease Eco28_RS03980 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE Eco28_RS03985 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Eco28_RS03990 PF01455 HupF/HypC family Eco28_RS03995 PF02798 Glutathione S-transferase, N-terminal domain Eco28_RS04000 PF05257 CHAP domain Eco28_RS04000 PF03738 Glutathionylspermidine synthase preATP-grasp Eco28_RS04010 PF01384 Phosphate transporter family Eco28_RS04030 PF01943 Polysaccharide biosynthesis protein Eco28_RS04040 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) Eco28_RS04045 PF03739 Lipopolysaccharide export system permease LptF/LptG Eco28_RS04055 PF00155 Aminotransferase class I and II Eco28_RS04060 PF00550 Phosphopantetheine attachment site Eco28_RS04070 PF00501 AMP-binding enzyme Eco28_RS04070 PF14535 AMP-binding enzyme C-terminal domain Eco28_RS04080 PF07729 FCD domain Eco28_RS04080 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS04085 PF01565 FAD binding domain Eco28_RS04085 PF02913 FAD linked oxidases, C-terminal domain Eco28_RS04090 PF01565 FAD binding domain Eco28_RS04095 PF02754 Cysteine-rich domain Eco28_RS04095 PF13183 4Fe-4S dicluster domain Eco28_RS04100 PF03928 Haem-degrading Eco28_RS04105 PF01274 Malate synthase Eco28_RS04110 PF02652 L-lactate permease Eco28_RS04120 PF13322 Domain of unknown function (DUF4092) Eco28_RS04120 PF17291 N-terminal domain of M60-like peptidases Eco28_RS04120 PF13402 Peptidase M60, enhancin and enhancin-like Eco28_RS04130 PF01478 Type IV leader peptidase family Eco28_RS04130 PF06750 Bacterial Peptidase A24 N-terminal domain Eco28_RS04135 PF16549 Type II secretion system (T2SS) pilotin, S protein Eco28_RS04140 PF11356 Type II secretion system protein C Eco28_RS04145 PF03958 Bacterial type II/III secretion system short domain Eco28_RS04145 PF00263 Bacterial type II and III secretion system protein Eco28_RS04150 PF00437 Type II/IV secretion system protein Eco28_RS04155 PF00482 Type II secretion system (T2SS), protein F Eco28_RS04160 PF08334 Type II secretion system (T2SS), protein G Eco28_RS04160 PF07963 Prokaryotic N-terminal methylation motif Eco28_RS04165 PF12019 Type II transport protein GspH Eco28_RS04170 PF02501 Type II secretion system (T2SS), protein I Eco28_RS04170 PF07963 Prokaryotic N-terminal methylation motif Eco28_RS04175 PF11612 Type II secretion system (T2SS), protein J Eco28_RS04175 PF07963 Prokaryotic N-terminal methylation motif Eco28_RS04180 PF03934 Type II secretion system (T2SS), protein K Eco28_RS04185 PF12693 GspL periplasmic domain Eco28_RS04190 PF04612 Type II secretion system (T2SS), protein M Eco28_RS04235 PF13166 AAA domain Eco28_RS04260 PF06755 CbtA_toxin of type IV toxin-antitoxin system Eco28_RS04265 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A Eco28_RS04270 PF06174 Protein of unknown function (DUF987) Eco28_RS04275 PF04002 RadC-like JAB domain Eco28_RS04280 PF03230 Antirestriction protein Eco28_RS04285 PF06067 Domain of unknown function (DUF932) Eco28_RS04290 PF06006 Bacterial protein of unknown function (DUF905) Eco28_RS04300 PF08220 DeoR-like helix-turn-helix domain Eco28_RS04300 PF13280 WYL domain Eco28_RS04305 PF01926 50S ribosome-binding GTPase Eco28_RS04335 PF00816 H-NS histone family Eco28_RS04380 PF00665 Integrase core domain Eco28_RS04380 PF13276 HTH-like domain Eco28_RS04380 PF13333 Integrase core domain Eco28_RS04400 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Eco28_RS04420 PF13505 Outer membrane protein beta-barrel domain Eco28_RS04435 PF01609 Transposase DDE domain Eco28_RS04435 PF05598 Transposase domain (DUF772) Eco28_RS04465 PF03949 Malic enzyme, NAD binding domain Eco28_RS04465 PF00390 Malic enzyme, N-terminal domain Eco28_RS04470 PF03606 C4-dicarboxylate anaerobic carrier Eco28_RS04475 PF01380 SIS domain Eco28_RS04475 PF01418 Helix-turn-helix domain, rpiR family Eco28_RS04480 PF00206 Lyase Eco28_RS04480 PF10397 Adenylosuccinate lyase C-terminus Eco28_RS04520 PF13416 Bacterial extracellular solute-binding protein Eco28_RS04540 PF13356 Arm DNA-binding domain Eco28_RS04540 PF00589 Phage integrase family Eco28_RS04550 PF04474 Protein of unknown function (DUF554) Eco28_RS04560 PF01276 Orn/Lys/Arg decarboxylase, major domain Eco28_RS04560 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Eco28_RS04560 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Eco28_RS04565 PF03825 Nucleoside H+ symporter Eco28_RS04570 PF01464 Transglycosylase SLT domain Eco28_RS04570 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain Eco28_RS04575 PF04362 Bacterial Fe(2+) trafficking Eco28_RS04580 PF00730 HhH-GPD superfamily base excision DNA repair protein Eco28_RS04580 PF10576 Iron-sulfur binding domain of endonuclease III Eco28_RS04580 PF00633 Helix-hairpin-helix motif Eco28_RS04580 PF14815 NUDIX domain Eco28_RS04590 PF02390 Putative methyltransferase Eco28_RS04595 PF04320 Protein with unknown function (DUF469) Eco28_RS04600 PF11101 Protein of unknown function (DUF2884) Eco28_RS04605 PF17763 Glutaminase/Asparaginase C-terminal domain Eco28_RS04605 PF00710 Asparaginase, N-terminal Eco28_RS04610 PF06717 Protein of unknown function (DUF1202) Eco28_RS04615 PF06969 HemN C-terminal domain Eco28_RS04615 PF04055 Radical SAM superfamily Eco28_RS04620 PF01725 Ham1 family Eco28_RS04625 PF02594 Uncharacterised ACR, YggU family COG1872 Eco28_RS04630 PF02325 YGGT family Eco28_RS04635 PF01168 Alanine racemase, N-terminal domain Eco28_RS04640 PF00437 Type II/IV secretion system protein Eco28_RS04645 PF03652 Holliday junction resolvase Eco28_RS04650 PF02622 Uncharacterized ACR, COG1678 Eco28_RS04655 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Eco28_RS04655 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Eco28_RS04660 PF04452 RNA methyltransferase Eco28_RS04665 PF04231 Endonuclease I Eco28_RS04670 PF17283 SprT-like zinc ribbon domain Eco28_RS04670 PF10263 SprT-like family Eco28_RS04675 PF00083 Sugar (and other) transporter Eco28_RS04680 PF02772 S-adenosylmethionine synthetase, central domain Eco28_RS04680 PF02773 S-adenosylmethionine synthetase, C-terminal domain Eco28_RS04680 PF00438 S-adenosylmethionine synthetase, N-terminal domain Eco28_RS04690 PF17430 Uncharacterized YqgC-like Eco28_RS04695 PF11036 Virulence promoting factor Eco28_RS04700 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Eco28_RS04700 PF17944 Arginine decarboxylase C-terminal helical extension Eco28_RS04700 PF17810 Arginine decarboxylase helical bundle domain Eco28_RS04710 PF00491 Arginase family Eco28_RS04715 PF01435 Peptidase family M48 Eco28_RS04720 PF02779 Transketolase, pyrimidine binding domain Eco28_RS04720 PF02780 Transketolase, C-terminal domain Eco28_RS04720 PF00456 Transketolase, thiamine diphosphate binding domain Eco28_RS04725 PF01145 SPFH domain / Band 7 family Eco28_RS04735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS04740 PF02378 Phosphotransferase system, EIIC Eco28_RS04740 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS04745 PF00107 Zinc-binding dehydrogenase Eco28_RS04745 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS04750 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Eco28_RS04755 PF05068 Mannitol repressor Eco28_RS04765 PF00005 ABC transporter Eco28_RS04770 PF00005 ABC transporter Eco28_RS04795 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Eco28_RS04795 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Eco28_RS04800 PF00162 Phosphoglycerate kinase Eco28_RS04805 PF01116 Fructose-bisphosphate aldolase class-II Eco28_RS04810 PF05552 Conserved TM helix Eco28_RS04810 PF00924 Mechanosensitive ion channel Eco28_RS04815 PF01810 LysE type translocator Eco28_RS04820 PF04402 Protein of unknown function (DUF541) Eco28_RS04825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS04825 PF03466 LysR substrate binding domain Eco28_RS04830 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Eco28_RS04830 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Eco28_RS04835 PF00378 Enoyl-CoA hydratase/isomerase Eco28_RS04845 PF01642 Methylmalonyl-CoA mutase Eco28_RS04845 PF02310 B12 binding domain Eco28_RS04855 PF03466 LysR substrate binding domain Eco28_RS04855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS04860 PF03466 LysR substrate binding domain Eco28_RS04865 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Eco28_RS04870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Eco28_RS04870 PF01842 ACT domain Eco28_RS04870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS04890 PF01812 5-formyltetrahydrofolate cyclo-ligase family Eco28_RS04900 PF05164 Cell division protein ZapA Eco28_RS04910 PF03695 Uncharacterised protein family (UPF0149) Eco28_RS04915 PF05195 Aminopeptidase P, N-terminal domain Eco28_RS04915 PF00557 Metallopeptidase family M24 Eco28_RS04920 PF01494 FAD binding domain Eco28_RS04925 PF01494 FAD binding domain Eco28_RS04930 PF08669 Glycine cleavage T-protein C-terminal barrel domain Eco28_RS04930 PF01571 Aminomethyltransferase folate-binding domain Eco28_RS04935 PF01597 Glycine cleavage H-protein Eco28_RS04940 PF02347 Glycine cleavage system P-protein Eco28_RS04945 PF00232 Glycosyl hydrolase family 1 Eco28_RS04950 PF04266 ASCH domain Eco28_RS04955 PF03006 Haemolysin-III related Eco28_RS04960 PF01571 Aminomethyltransferase folate-binding domain Eco28_RS04970 PF03937 Flavinator of succinate dehydrogenase Eco28_RS04975 PF07254 Membrane-bound toxin component of toxin-antitoxin system Eco28_RS04980 PF00258 Flavodoxin Eco28_RS04985 PF02899 Phage integrase, N-terminal SAM-like domain Eco28_RS04985 PF00589 Phage integrase family Eco28_RS04990 PF10411 Disulfide bond isomerase protein N-terminus Eco28_RS04990 PF13098 Thioredoxin-like domain Eco28_RS04995 PF01368 DHH family Eco28_RS04995 PF02272 DHHA1 domain Eco28_RS04995 PF17768 RecJ OB domain Eco28_RS05005 PF01336 OB-fold nucleic acid binding domain Eco28_RS05005 PF00152 tRNA synthetases class II (D, K and N) Eco28_RS05010 PF00293 NUDIX domain Eco28_RS05020 PF00860 Permease family Eco28_RS05030 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Eco28_RS05030 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS05030 PF13247 4Fe-4S dicluster domain Eco28_RS05035 PF13247 4Fe-4S dicluster domain Eco28_RS05040 PF00860 Permease family Eco28_RS05045 PF01979 Amidohydrolase family Eco28_RS05050 PF00860 Permease family Eco28_RS05055 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Eco28_RS05055 PF01799 [2Fe-2S] binding domain Eco28_RS05055 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Eco28_RS05060 PF00941 FAD binding domain in molybdopterin dehydrogenase Eco28_RS05065 PF01979 Amidohydrolase family Eco28_RS05070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Eco28_RS05070 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS05075 PF12804 MobA-like NTP transferase domain Eco28_RS05085 PF02625 XdhC and CoxI family Eco28_RS05085 PF13478 XdhC Rossmann domain Eco28_RS05090 PF00696 Amino acid kinase family Eco28_RS05095 PF01979 Amidohydrolase family Eco28_RS05100 PF07687 Peptidase dimerisation domain Eco28_RS05100 PF01546 Peptidase family M20/M25/M40 Eco28_RS05105 PF00291 Pyridoxal-phosphate dependent enzyme Eco28_RS05110 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Eco28_RS05110 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Eco28_RS05115 PF13188 PAS domain Eco28_RS05115 PF02954 Bacterial regulatory protein, Fis family Eco28_RS05115 PF00158 Sigma-54 interaction domain Eco28_RS05120 PF01799 [2Fe-2S] binding domain Eco28_RS05120 PF00111 2Fe-2S iron-sulfur cluster binding domain Eco28_RS05125 PF03450 CO dehydrogenase flavoprotein C-terminal domain Eco28_RS05125 PF00941 FAD binding domain in molybdopterin dehydrogenase Eco28_RS05130 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Eco28_RS05130 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Eco28_RS05140 PF01551 Peptidase family M23 Eco28_RS05140 PF01476 LysM domain Eco28_RS05160 PF12833 Helix-turn-helix domain Eco28_RS05165 PF00263 Bacterial type II and III secretion system protein Eco28_RS05165 PF03958 Bacterial type II/III secretion system short domain Eco28_RS05170 PF07201 HrpJ-like domain Eco28_RS05175 PF00771 FHIPEP family Eco28_RS05180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Eco28_RS05180 PF18269 T3SS EscN ATPase C-terminal domain Eco28_RS05180 PF02874 ATP synthase alpha/beta family, beta-barrel domain Eco28_RS05200 PF00813 FliP family Eco28_RS05205 PF01313 Bacterial export proteins, family 3 Eco28_RS05210 PF01311 Bacterial export proteins, family 1 Eco28_RS05215 PF01312 FlhB HrpN YscU SpaS Family Eco28_RS05230 PF09480 Type III secretion system protein PrgH-EprH (PrgH) Eco28_RS05235 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF Eco28_RS05245 PF01514 Secretory protein of YscJ/FliF family Eco28_RS05250 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) Eco28_RS05260 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS05260 PF00072 Response regulator receiver domain Eco28_RS05265 PF01464 Transglycosylase SLT domain Eco28_RS05275 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS05280 PF07720 Tetratricopeptide repeat Eco28_RS05315 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS05320 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS05325 PF03222 Tryptophan/tyrosine permease family Eco28_RS05335 PF03222 Tryptophan/tyrosine permease family Eco28_RS05340 PF02803 Thiolase, C-terminal domain Eco28_RS05340 PF00108 Thiolase, N-terminal domain Eco28_RS05345 PF04962 KduI/IolB family Eco28_RS05355 PF00083 Sugar (and other) transporter Eco28_RS05360 PF01177 Asp/Glu/Hydantoin racemase Eco28_RS05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS05365 PF03466 LysR substrate binding domain Eco28_RS05370 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Eco28_RS05370 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Eco28_RS05375 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS05380 PF01553 Acyltransferase Eco28_RS05380 PF00501 AMP-binding enzyme Eco28_RS05385 PF07690 Major Facilitator Superfamily Eco28_RS05390 PF00248 Aldo/keto reductase family Eco28_RS05395 PF06004 Bacterial protein of unknown function (DUF903) Eco28_RS05400 PF03741 Integral membrane protein TerC family Eco28_RS05405 PF02976 DNA mismatch repair enzyme MutH Eco28_RS05410 PF00293 NUDIX domain Eco28_RS05415 PF01590 GAF domain Eco28_RS05415 PF05524 PEP-utilising enzyme, N-terminal Eco28_RS05415 PF02896 PEP-utilising enzyme, TIM barrel domain Eco28_RS05415 PF00391 PEP-utilising enzyme, mobile domain Eco28_RS05420 PF01790 Prolipoprotein diacylglyceryl transferase Eco28_RS05425 PF00303 Thymidylate synthase Eco28_RS05430 PF07963 Prokaryotic N-terminal methylation motif Eco28_RS05435 PF07963 Prokaryotic N-terminal methylation motif Eco28_RS05440 PF10713 Protein of unknown function (DUF2509) Eco28_RS05445 PF07963 Prokaryotic N-terminal methylation motif Eco28_RS05445 PF12528 Type II secretion prepilin peptidase dependent protein C Eco28_RS05450 PF17946 RecC C-terminal domain Eco28_RS05455 PF00675 Insulinase (Peptidase family M16) Eco28_RS05455 PF05193 Peptidase M16 inactive domain Eco28_RS05455 PF16187 Middle or third domain of peptidase_M16 Eco28_RS05460 PF12705 PD-(D/E)XK nuclease superfamily Eco28_RS05460 PF13361 UvrD-like helicase C-terminal domain Eco28_RS05460 PF00580 UvrD/REP helicase N-terminal domain Eco28_RS05465 PF13538 UvrD-like helicase C-terminal domain Eco28_RS05470 PF00696 Amino acid kinase family Eco28_RS05470 PF00583 Acetyltransferase (GNAT) family Eco28_RS05475 PF11741 AMIN domain Eco28_RS05475 PF01520 N-acetylmuramoyl-L-alanine amidase Eco28_RS05500 PF06725 3D domain Eco28_RS05500 PF03562 MltA specific insert domain Eco28_RS05505 PF00899 ThiF family Eco28_RS05510 PF02657 Fe-S metabolism associated domain Eco28_RS05515 PF00266 Aminotransferase class-V Eco28_RS05520 PF06004 Bacterial protein of unknown function (DUF903) Eco28_RS05525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS05525 PF03466 LysR substrate binding domain Eco28_RS05530 PF04241 Protein of unknown function (DUF423) Eco28_RS05535 PF01728 FtsJ-like methyltransferase Eco28_RS05535 PF18125 RlmM ferredoxin-like domain Eco28_RS05540 PF08220 DeoR-like helix-turn-helix domain Eco28_RS05540 PF00455 DeoR C terminal sensor domain Eco28_RS05545 PF05025 RbsD / FucU transport protein family Eco28_RS05550 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Eco28_RS05550 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Eco28_RS05555 PF02952 L-fucose isomerase, C-terminal domain Eco28_RS05555 PF07882 L-fucose isomerase, second N-terminal domain Eco28_RS05555 PF07881 L-fucose isomerase, first N-terminal domain Eco28_RS05560 PF07690 Major Facilitator Superfamily Eco28_RS05565 PF00596 Class II Aldolase and Adducin N-terminal domain Eco28_RS05570 PF00465 Iron-containing alcohol dehydrogenase Eco28_RS05575 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Eco28_RS05575 PF01367 5'-3' exonuclease, C-terminal SAM fold Eco28_RS05580 PF03313 Serine dehydratase alpha chain Eco28_RS05580 PF03315 Serine dehydratase beta chain Eco28_RS05590 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases Eco28_RS05590 PF03641 Possible lysine decarboxylase Eco28_RS05590 PF11892 Domain of unknown function (DUF3412) Eco28_RS05595 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term Eco28_RS05595 PF14489 QueF-like protein Eco28_RS05600 PF07348 Syd protein (SUKH-2) Eco28_RS05605 PF04287 tRNA pseudouridine synthase C Eco28_RS05610 PF00849 RNA pseudouridylate synthase Eco28_RS05615 PF00258 Flavodoxin Eco28_RS05620 PF07690 Major Facilitator Superfamily Eco28_RS05625 PF13378 Enolase C-terminal domain-like Eco28_RS05625 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Eco28_RS05630 PF13378 Enolase C-terminal domain-like Eco28_RS05635 PF00672 HAMP domain Eco28_RS05635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS05635 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS05635 PF00072 Response regulator receiver domain Eco28_RS05635 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Eco28_RS05635 PF01627 Hpt domain Eco28_RS05640 PF05958 tRNA (Uracil-5-)-methyltransferase Eco28_RS05640 PF01938 TRAM domain Eco28_RS05645 PF04607 Region found in RelA / SpoT proteins Eco28_RS05645 PF13291 ACT domain Eco28_RS05645 PF02824 TGS domain Eco28_RS05650 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Eco28_RS05655 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Eco28_RS05660 PF03819 MazG nucleotide pyrophosphohydrolase domain Eco28_RS05665 PF00117 Glutamine amidotransferase class-I Eco28_RS05665 PF06418 CTP synthase N-terminus Eco28_RS05670 PF00113 Enolase, C-terminal TIM barrel domain Eco28_RS05670 PF03952 Enolase, N-terminal domain Eco28_RS05675 PF04536 TPM domain Eco28_RS05685 PF04536 TPM domain Eco28_RS05695 PF04055 Radical SAM superfamily Eco28_RS05700 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Eco28_RS05700 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Eco28_RS05705 PF07690 Major Facilitator Superfamily Eco28_RS05715 PF02913 FAD linked oxidases, C-terminal domain Eco28_RS05715 PF01565 FAD binding domain Eco28_RS05720 PF00083 Sugar (and other) transporter Eco28_RS05725 PF01012 Electron transfer flavoprotein domain Eco28_RS05730 PF01012 Electron transfer flavoprotein domain Eco28_RS05730 PF00766 Electron transfer flavoprotein FAD-binding domain Eco28_RS05735 PF04309 Glycerol-3-phosphate responsive antiterminator Eco28_RS05745 PF01266 FAD dependent oxidoreductase Eco28_RS05750 PF01242 6-pyruvoyl tetrahydropterin synthase Eco28_RS05755 PF00667 FAD binding domain Eco28_RS05755 PF00258 Flavodoxin Eco28_RS05755 PF00175 Oxidoreductase NAD-binding domain Eco28_RS05760 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Eco28_RS05760 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Eco28_RS05765 PF01507 Phosphoadenosine phosphosulfate reductase family Eco28_RS05775 PF01848 Hok/gef family Eco28_RS05780 PF00271 Helicase conserved C-terminal domain Eco28_RS05780 PF00270 DEAD/DEAH box helicase Eco28_RS05780 PF18019 HD domain Eco28_RS05800 PF09344 CT1975-like protein Eco28_RS05805 PF09704 CRISPR-associated protein (Cas_Cas5) Eco28_RS05815 PF01867 CRISPR associated protein Cas1 Eco28_RS05820 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) Eco28_RS05825 PF04389 Peptidase family M28 Eco28_RS05830 PF01507 Phosphoadenosine phosphosulfate reductase family Eco28_RS05835 PF00009 Elongation factor Tu GTP binding domain Eco28_RS05845 PF12084 Protein of unknown function (DUF3561) Eco28_RS05850 PF04977 Septum formation initiator Eco28_RS05855 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Eco28_RS05860 PF02542 YgbB family Eco28_RS05865 PF01142 tRNA pseudouridine synthase D (TruD) Eco28_RS05870 PF01975 Survival protein SurE Eco28_RS05880 PF01551 Peptidase family M23 Eco28_RS05880 PF01476 LysM domain Eco28_RS05885 PF04539 Sigma-70 region 3 Eco28_RS05885 PF04542 Sigma-70 region 2 Eco28_RS05885 PF00140 Sigma-70 factor, region 1.2 Eco28_RS05885 PF04545 Sigma-70, region 4 Eco28_RS05890 PF01047 MarR family Eco28_RS05895 PF02441 Flavoprotein Eco28_RS05900 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Eco28_RS05910 PF00149 Calcineurin-like phosphoesterase Eco28_RS05915 PF05190 MutS family domain IV Eco28_RS05915 PF00488 MutS domain V Eco28_RS05915 PF05192 MutS domain III Eco28_RS05915 PF05188 MutS domain II Eco28_RS05915 PF01624 MutS domain I Eco28_RS05925 PF11756 Nitrous oxide-stimulated promoter Eco28_RS05930 PF00158 Sigma-54 interaction domain Eco28_RS05930 PF01590 GAF domain Eco28_RS05935 PF00586 AIR synthase related protein, N-terminal domain Eco28_RS05935 PF02769 AIR synthase related protein, C-terminal domain Eco28_RS05940 PF01924 Hydrogenase formation hypA family Eco28_RS05945 PF01455 HupF/HypC family Eco28_RS05950 PF02492 CobW/HypB/UreG, nucleotide-binding domain Eco28_RS05955 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Eco28_RS05960 PF11046 Transcriptional repressor of hyc and hyp operons Eco28_RS05970 PF13247 4Fe-4S dicluster domain Eco28_RS05975 PF00361 Proton-conducting membrane transporter Eco28_RS05980 PF00146 NADH dehydrogenase Eco28_RS05985 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Eco28_RS05985 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Eco28_RS05985 PF00374 Nickel-dependent hydrogenase Eco28_RS05990 PF12838 4Fe-4S dicluster domain Eco28_RS05995 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Eco28_RS06000 PF07450 Formate hydrogenlyase maturation protein HycH Eco28_RS06005 PF01750 Hydrogenase maturation protease Eco28_RS06010 PF01381 Helix-turn-helix Eco28_RS06015 PF00232 Glycosyl hydrolase family 1 Eco28_RS06020 PF02378 Phosphotransferase system, EIIC Eco28_RS06020 PF00367 phosphotransferase system, EIIB Eco28_RS06025 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS06030 PF13247 4Fe-4S dicluster domain Eco28_RS06030 PF12800 4Fe-4S binding domain Eco28_RS06035 PF17788 HypF Kae1-like domain Eco28_RS06035 PF01300 Telomere recombination Eco28_RS06035 PF07503 HypF finger Eco28_RS06035 PF00708 Acylphosphatase Eco28_RS06040 PF18113 Rubredoxin binding C-terminal domain Eco28_RS06040 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS06045 PF00258 Flavodoxin Eco28_RS06045 PF00301 Rubredoxin Eco28_RS06045 PF00753 Metallo-beta-lactamase superfamily Eco28_RS06050 PF01590 GAF domain Eco28_RS06050 PF00158 Sigma-54 interaction domain Eco28_RS06055 PF00571 CBS domain Eco28_RS06055 PF01380 SIS domain Eco28_RS06060 PF08220 DeoR-like helix-turn-helix domain Eco28_RS06060 PF00455 DeoR C terminal sensor domain Eco28_RS06065 PF06923 Glucitol operon activator protein (GutM) Eco28_RS06070 PF00106 short chain dehydrogenase Eco28_RS06075 PF03829 PTS system glucitol/sorbitol-specific IIA component Eco28_RS06080 PF03612 Sorbitol phosphotransferase enzyme II N-terminus Eco28_RS06080 PF07663 Sorbitol phosphotransferase enzyme II C-terminus Eco28_RS06085 PF03608 PTS system enzyme II sorbitol-specific factor Eco28_RS06090 PF13406 Transglycosylase SLT domain Eco28_RS06095 PF02464 Competence-damaged protein Eco28_RS06100 PF00154 recA bacterial DNA recombination protein Eco28_RS06105 PF02631 RecX family Eco28_RS06110 PF02272 DHHA1 domain Eco28_RS06110 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Eco28_RS06110 PF01411 tRNA synthetases class II (A) Eco28_RS06115 PF02599 Global regulator protein family Eco28_RS06140 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS06145 PF09335 SNARE associated Golgi protein Eco28_RS06150 PF04262 Glutamate-cysteine ligase Eco28_RS06155 PF02664 S-Ribosylhomocysteinase (LuxS) Eco28_RS06160 PF07690 Major Facilitator Superfamily Eco28_RS06165 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS06165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS06170 PF01047 MarR family Eco28_RS06175 PF05437 Branched-chain amino acid transport protein (AzlD) Eco28_RS06180 PF03591 AzlC protein Eco28_RS06185 PF07690 Major Facilitator Superfamily Eco28_RS06190 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Eco28_RS06195 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS06200 PF00005 ABC transporter Eco28_RS06200 PF00571 CBS domain Eco28_RS06210 PF00268 Ribonucleotide reductase, small chain Eco28_RS06215 PF08343 Ribonucleotide reductase N-terminal Eco28_RS06215 PF02867 Ribonucleotide reductase, barrel domain Eco28_RS06215 PF00317 Ribonucleotide reductase, all-alpha domain Eco28_RS06220 PF07972 NrdI Flavodoxin like Eco28_RS06225 PF00462 Glutaredoxin Eco28_RS06235 PF02627 Carboxymuconolactone decarboxylase family Eco28_RS06240 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS06240 PF00155 Aminotransferase class I and II Eco28_RS06245 PF05957 Bacterial protein of unknown function (DUF883) Eco28_RS06250 PF09400 Protein of unknown function (DUF2002) Eco28_RS06255 PF06610 L-alanine exporter Eco28_RS06260 PF00816 H-NS histone family Eco28_RS06265 PF00581 Rhodanese-like domain Eco28_RS06265 PF11127 Protein of unknown function (DUF2892) Eco28_RS06270 PF01022 Bacterial regulatory protein, arsR family Eco28_RS06275 PF01679 Proteolipid membrane potential modulator Eco28_RS06280 PF04972 BON domain Eco28_RS06280 PF01476 LysM domain Eco28_RS06285 PF07729 FCD domain Eco28_RS06285 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS06290 PF00324 Amino acid permease Eco28_RS06295 PF00202 Aminotransferase class-III Eco28_RS06300 PF00171 Aldehyde dehydrogenase family Eco28_RS06305 PF01266 FAD dependent oxidoreductase Eco28_RS06310 PF08943 CsiD Eco28_RS06315 PF00128 Alpha amylase, catalytic domain Eco28_RS06330 PF17621 Family of unknown function (DUF5508) Eco28_RS06350 PF03212 Pertactin Eco28_RS06350 PF03797 Autotransporter beta-domain Eco28_RS06350 PF16168 Adhesin of bacterial autotransporter system, probable stalk Eco28_RS06370 PF17345 Family of unknown function (DUF5375) Eco28_RS06430 PF00589 Phage integrase family Eco28_RS06430 PF13356 Arm DNA-binding domain Eco28_RS06440 PF01668 SmpB protein Eco28_RS06445 PF03364 Polyketide cyclase / dehydrase and lipid transport Eco28_RS06450 PF03658 RnfH family Ubiquitin Eco28_RS06455 PF04355 SmpA / OmlA family Eco28_RS06460 PF02463 RecF/RecN/SMC N terminal domain Eco28_RS06465 PF01513 ATP-NAD kinase Eco28_RS06475 PF01025 GrpE Eco28_RS06480 PF03471 Transporter associated domain Eco28_RS06480 PF01595 Cyclin M transmembrane N-terminal domain Eco28_RS06480 PF00571 CBS domain Eco28_RS06485 PF01578 Cytochrome C assembly protein Eco28_RS06490 PF00448 SRP54-type protein, GTPase domain Eco28_RS06490 PF02881 SRP54-type protein, helical bundle domain Eco28_RS06490 PF02978 Signal peptide binding domain Eco28_RS06495 PF00886 Ribosomal protein S16 Eco28_RS06500 PF05239 PRC-barrel domain Eco28_RS06500 PF01782 RimM N-terminal domain Eco28_RS06505 PF01746 tRNA (Guanine-1)-methyltransferase Eco28_RS06510 PF01245 Ribosomal protein L19 Eco28_RS06515 PF00691 OmpA family Eco28_RS06520 PF17152 Periplasmic sensor domain Eco28_RS06520 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS06525 PF13689 YfiR/HmsC-like Eco28_RS06530 PF10973 Protein of unknown function (DUF2799) Eco28_RS06535 PF00793 DAHP synthetase I family Eco28_RS06540 PF02153 Prephenate dehydrogenase Eco28_RS06540 PF01817 Chorismate mutase type II Eco28_RS06545 PF01817 Chorismate mutase type II Eco28_RS06545 PF00800 Prephenate dehydratase Eco28_RS06550 PF00589 Phage integrase family Eco28_RS06550 PF02899 Phage integrase, N-terminal SAM-like domain Eco28_RS06555 PF01381 Helix-turn-helix Eco28_RS06605 PF05840 Bacteriophage replication gene A protein (GPA) Eco28_RS06610 PF06406 StbA protein Eco28_RS06720 PF07484 Phage Tail Collar Domain Eco28_RS06725 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS06730 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS06740 PF02796 Helix-turn-helix domain of resolvase Eco28_RS06740 PF00239 Resolvase, N terminal domain Eco28_RS06770 PF04984 Phage tail sheath protein subtilisin-like domain Eco28_RS06770 PF17482 Phage tail sheath C-terminal domain Eco28_RS06795 PF05154 TM2 domain Eco28_RS06805 PF01555 DNA methylase Eco28_RS06810 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Eco28_RS06820 PF13525 Outer membrane lipoprotein Eco28_RS06825 PF00849 RNA pseudouridylate synthase Eco28_RS06825 PF01479 S4 domain Eco28_RS06830 PF02578 Multi-copper polyphenol oxidoreductase laccase Eco28_RS06835 PF00004 ATPase family associated with various cellular activities (AAA) Eco28_RS06835 PF07724 AAA domain (Cdc48 subfamily) Eco28_RS06835 PF17871 AAA lid domain Eco28_RS06835 PF02861 Clp amino terminal domain, pathogenicity island component Eco28_RS06835 PF10431 C-terminal, D2-small domain, of ClpB protein Eco28_RS06865 PF00083 Sugar (and other) transporter Eco28_RS06870 PF10043 Predicted periplasmic lipoprotein (DUF2279) Eco28_RS06875 PF13091 PLD-like domain Eco28_RS06880 PF13607 Succinyl-CoA ligase like flavodoxin domain Eco28_RS06880 PF13380 CoA binding domain Eco28_RS06880 PF00583 Acetyltransferase (GNAT) family Eco28_RS06885 PF03942 DTW domain Eco28_RS06890 PF00085 Thioredoxin Eco28_RS06900 PF00588 SpoU rRNA Methylase family Eco28_RS06900 PF08032 RNA 2'-O ribose methyltransferase substrate binding Eco28_RS06905 PF03167 Uracil DNA glycosylase superfamily Eco28_RS06910 PF01228 Glycine radical Eco28_RS06915 PF01810 LysE type translocator Eco28_RS06920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS06920 PF03466 LysR substrate binding domain Eco28_RS06925 PF00270 DEAD/DEAH box helicase Eco28_RS06925 PF00271 Helicase conserved C-terminal domain Eco28_RS06930 PF05175 Methyltransferase small domain Eco28_RS06935 PF00890 FAD binding domain Eco28_RS06935 PF02910 Fumarate reductase flavoprotein C-term Eco28_RS06940 PF08281 Sigma-70, region 4 Eco28_RS06940 PF04542 Sigma-70 region 2 Eco28_RS06945 PF03872 Anti sigma-E protein RseA, N-terminal domain Eco28_RS06945 PF03873 Anti sigma-E protein RseA, C-terminal domain Eco28_RS06950 PF03888 MucB/RseB N-terminal domain Eco28_RS06950 PF17188 MucB/RseB C-terminal domain Eco28_RS06960 PF06421 GTP-binding protein LepA C-terminus Eco28_RS06960 PF03144 Elongation factor Tu domain 2 Eco28_RS06960 PF00009 Elongation factor Tu GTP binding domain Eco28_RS06960 PF00679 Elongation factor G C-terminus Eco28_RS06965 PF10502 Signal peptidase, peptidase S26 Eco28_RS06975 PF14622 Ribonuclease-III-like Eco28_RS06975 PF00035 Double-stranded RNA binding motif Eco28_RS06980 PF01926 50S ribosome-binding GTPase Eco28_RS06980 PF07650 KH domain Eco28_RS06985 PF02565 Recombination protein O C terminal Eco28_RS06985 PF11967 Recombination protein O N terminal Eco28_RS06990 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Eco28_RS06995 PF01648 4'-phosphopantetheinyl transferase superfamily Eco28_RS07015 PF12838 4Fe-4S dicluster domain Eco28_RS07020 PF01380 SIS domain Eco28_RS07020 PF01418 Helix-turn-helix domain, rpiR family Eco28_RS07030 PF14437 MafB19-like deaminase Eco28_RS07035 PF01464 Transglycosylase SLT domain Eco28_RS07035 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS07045 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal Eco28_RS07045 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Eco28_RS07045 PF02769 AIR synthase related protein, C-terminal domain Eco28_RS07050 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS07050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS07055 PF13942 YfhG lipoprotein Eco28_RS07060 PF00158 Sigma-54 interaction domain Eco28_RS07060 PF00072 Response regulator receiver domain Eco28_RS07065 PF00543 Nitrogen regulatory protein P-II Eco28_RS07070 PF00175 Oxidoreductase NAD-binding domain Eco28_RS07070 PF00042 Globin Eco28_RS07070 PF00970 Oxidoreductase FAD-binding domain Eco28_RS07075 PF00464 Serine hydroxymethyltransferase Eco28_RS07080 PF00480 ROK family Eco28_RS07085 PF13181 Tetratricopeptide repeat Eco28_RS07085 PF17128 Domain of unknown function (DUF5107) Eco28_RS07090 PF13407 Periplasmic binding protein domain Eco28_RS07095 PF00005 ABC transporter Eco28_RS07100 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS07105 PF00107 Zinc-binding dehydrogenase Eco28_RS07105 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS07110 PF01263 Aldose 1-epimerase Eco28_RS07115 PF07681 DoxX Eco28_RS07120 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS07120 PF14759 Reductase C-terminal Eco28_RS07125 PF00106 short chain dehydrogenase Eco28_RS07130 PF00355 Rieske [2Fe-2S] domain Eco28_RS07135 PF00866 Ring hydroxylating beta subunit Eco28_RS07140 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Eco28_RS07140 PF00355 Rieske [2Fe-2S] domain Eco28_RS07145 PF03466 LysR substrate binding domain Eco28_RS07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS07150 PF12832 MFS_1 like family Eco28_RS07155 PF00874 PRD domain Eco28_RS07160 PF12146 Serine aminopeptidase, S33 Eco28_RS07165 PF00459 Inositol monophosphatase family Eco28_RS07170 PF00588 SpoU rRNA Methylase family Eco28_RS07175 PF02082 Transcriptional regulator Eco28_RS07180 PF00266 Aminotransferase class-V Eco28_RS07185 PF01592 NifU-like N terminal domain Eco28_RS07190 PF01521 Iron-sulphur cluster biosynthesis Eco28_RS07195 PF07743 HSCB C-terminal oligomerisation domain Eco28_RS07200 PF00012 Hsp70 protein Eco28_RS07205 PF00111 2Fe-2S iron-sulfur cluster binding domain Eco28_RS07210 PF04384 Iron-sulphur cluster assembly Eco28_RS07215 PF12404 Peptidase Eco28_RS07215 PF00883 Cytosol aminopeptidase family, catalytic domain Eco28_RS07220 PF14581 SseB protein C-terminal domain Eco28_RS07220 PF07179 SseB protein N-terminal domain Eco28_RS07225 PF00581 Rhodanese-like domain Eco28_RS07230 PF07678 A-macroglobulin TED domain Eco28_RS07230 PF01835 MG2 domain Eco28_RS07230 PF00207 Alpha-2-macroglobulin family Eco28_RS07230 PF17962 Bacterial macroglobulin domain 6 Eco28_RS07230 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Eco28_RS07230 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Eco28_RS07230 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Eco28_RS07230 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Eco28_RS07230 PF07703 Alpha-2-macroglobulin bait region domain Eco28_RS07235 PF00905 Penicillin binding protein transpeptidase domain Eco28_RS07235 PF00912 Transglycosylase Eco28_RS07235 PF06832 Penicillin-Binding Protein C-terminus Family Eco28_RS07240 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS07240 PF01568 Molydopterin dinucleotide binding domain Eco28_RS07240 PF00384 Molybdopterin oxidoreductase Eco28_RS07245 PF12800 4Fe-4S binding domain Eco28_RS07245 PF13247 4Fe-4S dicluster domain Eco28_RS07250 PF04976 DMSO reductase anchor subunit (DmsC) Eco28_RS07260 PF00334 Nucleoside diphosphate kinase Eco28_RS07265 PF04055 Radical SAM superfamily Eco28_RS07270 PF13464 Domain of unknown function (DUF4115) Eco28_RS07275 PF04551 GcpE protein Eco28_RS07280 PF13393 Histidyl-tRNA synthetase Eco28_RS07280 PF03129 Anticodon binding domain Eco28_RS07285 PF09976 Tetratricopeptide repeat-like domain Eco28_RS07290 PF13360 PQQ-like domain Eco28_RS07295 PF01926 50S ribosome-binding GTPase Eco28_RS07295 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Eco28_RS07300 PF07191 zinc-ribbons Eco28_RS07305 PF02601 Exonuclease VII, large subunit Eco28_RS07305 PF13742 OB-fold nucleic acid binding domain Eco28_RS07310 PF00571 CBS domain Eco28_RS07310 PF00478 IMP dehydrogenase / GMP reductase domain Eco28_RS07315 PF02540 NAD synthase Eco28_RS07315 PF00117 Glutamine amidotransferase class-I Eco28_RS07315 PF00958 GMP synthase C terminal domain Eco28_RS07325 PF00149 Calcineurin-like phosphoesterase Eco28_RS07350 PF06630 Enterobacterial exodeoxyribonuclease VIII Eco28_RS07350 PF12684 PDDEXK-like domain of unknown function (DUF3799) Eco28_RS07430 PF03592 Terminase small subunit Eco28_RS07430 PF10668 Phage terminase small subunit Eco28_RS07555 PF01757 Acyltransferase family Eco28_RS07570 PF00182 Chitinase class I Eco28_RS07580 PF17358 Family of unknown function (DUF5384) Eco28_RS07585 PF05433 Glycine zipper 2TM domain Eco28_RS07595 PF11119 Protein of unknown function (DUF2633) Eco28_RS07605 PF05231 MASE1 Eco28_RS07605 PF00563 EAL domain Eco28_RS07610 PF02541 Ppx/GppA phosphatase family Eco28_RS07615 PF02503 Polyphosphate kinase middle domain Eco28_RS07615 PF13090 Polyphosphate kinase C-terminal domain 2 Eco28_RS07615 PF17941 Polyphosphate kinase C-terminal domain 1 Eco28_RS07615 PF13089 Polyphosphate kinase N-terminal domain Eco28_RS07620 PF00551 Formyl transferase Eco28_RS07625 PF02769 AIR synthase related protein, C-terminal domain Eco28_RS07625 PF00586 AIR synthase related protein, N-terminal domain Eco28_RS07640 PF00860 Permease family Eco28_RS07645 PF00308 Bacterial dnaA protein Eco28_RS07650 PF03960 ArsC family Eco28_RS07655 PF01435 Peptidase family M48 Eco28_RS07660 PF01594 AI-2E family transporter Eco28_RS07665 PF01226 Formate/nitrite transporter Eco28_RS07670 PF01590 GAF domain Eco28_RS07670 PF00158 Sigma-54 interaction domain Eco28_RS07675 PF07450 Formate hydrogenlyase maturation protein HycH Eco28_RS07680 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Eco28_RS07685 PF12838 4Fe-4S dicluster domain Eco28_RS07690 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Eco28_RS07690 PF00374 Nickel-dependent hydrogenase Eco28_RS07690 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Eco28_RS07695 PF00361 Proton-conducting membrane transporter Eco28_RS07695 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Eco28_RS07700 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Eco28_RS07705 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Eco28_RS07705 PF00361 Proton-conducting membrane transporter Eco28_RS07710 PF00146 NADH dehydrogenase Eco28_RS07715 PF00361 Proton-conducting membrane transporter Eco28_RS07720 PF12798 4Fe-4S binding domain Eco28_RS07720 PF00037 4Fe-4S binding domain Eco28_RS07725 PF00578 AhpC/TSA family Eco28_RS07730 PF01842 ACT domain Eco28_RS07735 PF00701 Dihydrodipicolinate synthetase family Eco28_RS07740 PF06804 NlpB/DapX lipoprotein Eco28_RS07745 PF01259 SAICAR synthetase Eco28_RS07750 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Eco28_RS07755 PF01850 PIN domain Eco28_RS07760 PF04228 Putative neutral zinc metallopeptidase Eco28_RS07765 PF17176 tRNA-binding domain Eco28_RS07765 PF05127 Helicase Eco28_RS07765 PF13718 GNAT acetyltransferase 2 Eco28_RS07765 PF08351 Domain of unknown function (DUF1726) Eco28_RS07770 PF02230 Phospholipase/Carboxylesterase Eco28_RS07775 PF13980 Uncharacterised protein family (UPF0370) Eco28_RS07780 PF07687 Peptidase dimerisation domain Eco28_RS07780 PF01546 Peptidase family M20/M25/M40 Eco28_RS07785 PF03960 ArsC family Eco28_RS07800 PF00873 AcrB/AcrD/AcrF family Eco28_RS07805 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Eco28_RS07805 PF07730 Histidine kinase Eco28_RS07805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS07805 PF00672 HAMP domain Eco28_RS07810 PF13247 4Fe-4S dicluster domain Eco28_RS07810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Eco28_RS07810 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS07815 PF00293 NUDIX domain Eco28_RS07820 PF06674 Protein of unknown function (DUF1176) Eco28_RS07825 PF02779 Transketolase, pyrimidine binding domain Eco28_RS07825 PF02780 Transketolase, C-terminal domain Eco28_RS07825 PF00456 Transketolase, thiamine diphosphate binding domain Eco28_RS07830 PF00923 Transaldolase/Fructose-6-phosphate aldolase Eco28_RS07840 PF03949 Malic enzyme, NAD binding domain Eco28_RS07840 PF00390 Malic enzyme, N-terminal domain Eco28_RS07840 PF01515 Phosphate acetyl/butaryl transferase Eco28_RS07845 PF00936 BMC domain Eco28_RS07850 PF10662 Ethanolamine utilisation - propanediol utilisation Eco28_RS07855 PF06249 Ethanolamine utilisation protein EutQ Eco28_RS07860 PF01923 Cobalamin adenosyltransferase Eco28_RS07865 PF01515 Phosphate acetyl/butaryl transferase Eco28_RS07870 PF00936 BMC domain Eco28_RS07875 PF03319 Ethanolamine utilisation protein EutN/carboxysome Eco28_RS07880 PF00171 Aldehyde dehydrogenase family Eco28_RS07890 PF00465 Iron-containing alcohol dehydrogenase Eco28_RS07895 PF04346 Ethanolamine utilisation protein, EutH Eco28_RS07900 PF06277 Ethanolamine utilisation protein EutA Eco28_RS07905 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Eco28_RS07910 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Eco28_RS07915 PF00936 BMC domain Eco28_RS07920 PF00936 BMC domain Eco28_RS07920 PF16365 Ethanolamine utilization protein EutK C-terminus Eco28_RS07925 PF12833 Helix-turn-helix domain Eco28_RS07930 PF01218 Coproporphyrinogen III oxidase Eco28_RS07935 PF01520 N-acetylmuramoyl-L-alanine amidase Eco28_RS07940 PF00583 Acetyltransferase (GNAT) family Eco28_RS07945 PF11143 Protein of unknown function (DUF2919) Eco28_RS07950 PF06572 Protein of unknown function (DUF1131) Eco28_RS07955 PF04261 Dyp-type peroxidase family Eco28_RS07960 PF00144 Beta-lactamase Eco28_RS07965 PF00367 phosphotransferase system, EIIB Eco28_RS07965 PF02378 Phosphotransferase system, EIIC Eco28_RS07970 PF01380 SIS domain Eco28_RS07975 PF01380 SIS domain Eco28_RS07975 PF01418 Helix-turn-helix domain, rpiR family Eco28_RS07990 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS07995 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS08000 PF00005 ABC transporter Eco28_RS08005 PF00291 Pyridoxal-phosphate dependent enzyme Eco28_RS08010 PF17263 Family of unknown function (DUF5329) Eco28_RS08015 PF08543 Phosphomethylpyrimidine kinase Eco28_RS08020 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Eco28_RS08025 PF05524 PEP-utilising enzyme, N-terminal Eco28_RS08025 PF00391 PEP-utilising enzyme, mobile domain Eco28_RS08025 PF02896 PEP-utilising enzyme, TIM barrel domain Eco28_RS08030 PF00381 PTS HPr component phosphorylation site Eco28_RS08035 PF00291 Pyridoxal-phosphate dependent enzyme Eco28_RS08045 PF04354 ZipA, C-terminal FtsZ-binding domain Eco28_RS08050 PF01653 NAD-dependent DNA ligase adenylation domain Eco28_RS08050 PF12826 Helix-hairpin-helix motif Eco28_RS08050 PF00533 BRCA1 C Terminus (BRCT) domain Eco28_RS08050 PF03120 NAD-dependent DNA ligase OB-fold domain Eco28_RS08050 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Eco28_RS08055 PF12843 Putative quorum-sensing-regulated virulence factor Eco28_RS08060 PF13593 SBF-like CPA transporter family (DUF4137) Eco28_RS08065 PF03466 LysR substrate binding domain Eco28_RS08065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS08100 PF00749 tRNA synthetases class I (E and Q), catalytic domain Eco28_RS08105 PF01797 Transposase IS200 like Eco28_RS08115 PF07037 Putative transcription regulator (DUF1323) Eco28_RS08120 PF07037 Putative transcription regulator (DUF1323) Eco28_RS08135 PF05231 MASE1 Eco28_RS08135 PF00563 EAL domain Eco28_RS08140 PF07670 Nucleoside recognition Eco28_RS08140 PF01773 Na+ dependent nucleoside transporter N-terminus Eco28_RS08140 PF07662 Na+ dependent nucleoside transporter C-terminus Eco28_RS08145 PF01566 Natural resistance-associated macrophage protein Eco28_RS08150 PF10697 Protein of unknown function (DUF2502) Eco28_RS08155 PF00654 Voltage gated chloride channel Eco28_RS08160 PF02685 Glucokinase Eco28_RS08165 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS08170 PF02378 Phosphotransferase system, EIIC Eco28_RS08175 PF00557 Metallopeptidase family M24 Eco28_RS08175 PF01321 Creatinase/Prolidase N-terminal domain Eco28_RS08180 PF05343 M42 glutamyl aminopeptidase Eco28_RS08185 PF05524 PEP-utilising enzyme, N-terminal Eco28_RS08185 PF00391 PEP-utilising enzyme, mobile domain Eco28_RS08185 PF02896 PEP-utilising enzyme, TIM barrel domain Eco28_RS08185 PF00381 PTS HPr component phosphorylation site Eco28_RS08185 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS08190 PF12833 Helix-turn-helix domain Eco28_RS08195 PF04397 LytTr DNA-binding domain Eco28_RS08195 PF00072 Response regulator receiver domain Eco28_RS08200 PF06580 Histidine kinase Eco28_RS08200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS08200 PF07694 5TMR of 5TMR-LYT Eco28_RS08205 PF00155 Aminotransferase class I and II Eco28_RS08215 PF03279 Bacterial lipid A biosynthesis acyltransferase Eco28_RS08220 PF10810 Protein of unknown function (DUF2545) Eco28_RS08230 PF10938 YfdX protein Eco28_RS08235 PF02515 CoA-transferase family III Eco28_RS08240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Eco28_RS08240 PF00205 Thiamine pyrophosphate enzyme, central domain Eco28_RS08240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Eco28_RS08245 PF03547 Membrane transport protein Eco28_RS08250 PF02515 CoA-transferase family III Eco28_RS08255 PF00072 Response regulator receiver domain Eco28_RS08255 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS08255 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS08255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS08260 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS08260 PF00072 Response regulator receiver domain Eco28_RS08265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS08265 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS08270 PF07690 Major Facilitator Superfamily Eco28_RS08275 PF00291 Pyridoxal-phosphate dependent enzyme Eco28_RS08280 PF02447 GntP family permease Eco28_RS08285 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Eco28_RS08285 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS08290 PF00251 Glycosyl hydrolases family 32 N-terminal domain Eco28_RS08290 PF08244 Glycosyl hydrolases family 32 C terminal Eco28_RS08295 PF00294 pfkB family carbohydrate kinase Eco28_RS08300 PF01306 LacY proton/sugar symporter Eco28_RS08315 PF01226 Formate/nitrite transporter Eco28_RS08325 PF04333 MlaA lipoprotein Eco28_RS08335 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) Eco28_RS08345 PF04175 Protein of unknown function (DUF406) Eco28_RS08350 PF00108 Thiolase, N-terminal domain Eco28_RS08350 PF02803 Thiolase, C-terminal domain Eco28_RS08355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Eco28_RS08355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Eco28_RS08355 PF00378 Enoyl-CoA hydratase/isomerase Eco28_RS08360 PF00300 Histidine phosphatase superfamily (branch 1) Eco28_RS08365 PF00419 Fimbrial protein Eco28_RS08370 PF00577 Outer membrane usher protein Eco28_RS08370 PF13954 PapC N-terminal domain Eco28_RS08370 PF13953 PapC C-terminal domain Eco28_RS08375 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS08375 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS08380 PF00419 Fimbrial protein Eco28_RS08385 PF00419 Fimbrial protein Eco28_RS08390 PF00419 Fimbrial protein Eco28_RS08395 PF11245 Protein of unknown function (DUF2544) Eco28_RS08400 PF01713 Smr domain Eco28_RS08405 PF05175 Methyltransferase small domain Eco28_RS08410 PF01264 Chorismate synthase Eco28_RS08415 PF03411 Penicillin-insensitive murein endopeptidase Eco28_RS08420 PF01925 Sulfite exporter TauE/SafE Eco28_RS08425 PF04315 Elongation factor P hydroxylase Eco28_RS08430 PF08891 YfcL protein Eco28_RS08435 PF01266 FAD dependent oxidoreductase Eco28_RS08435 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Eco28_RS08440 PF00109 Beta-ketoacyl synthase, N-terminal domain Eco28_RS08440 PF02801 Beta-ketoacyl synthase, C-terminal domain Eco28_RS08450 PF07690 Major Facilitator Superfamily Eco28_RS08460 PF11890 Domain of unknown function (DUF3410) Eco28_RS08460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Eco28_RS08460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS08465 PF01118 Semialdehyde dehydrogenase, NAD binding domain Eco28_RS08465 PF02774 Semialdehyde dehydrogenase, dimerisation domain Eco28_RS08470 PF01416 tRNA pseudouridine synthase Eco28_RS08475 PF09335 SNARE associated Golgi protein Eco28_RS08480 PF17848 Acetyl-coA carboxylase zinc finger domain Eco28_RS08480 PF01039 Carboxyl transferase domain Eco28_RS08485 PF02875 Mur ligase family, glutamate ligase domain Eco28_RS08485 PF08245 Mur ligase middle domain Eco28_RS08490 PF05036 Sporulation related domain Eco28_RS08495 PF02674 Colicin V production protein Eco28_RS08500 PF00156 Phosphoribosyl transferase domain Eco28_RS08505 PF02441 Flavoprotein Eco28_RS08510 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS08515 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS08520 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS08525 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS08530 PF00005 ABC transporter Eco28_RS08535 PF04754 Putative transposase, YhgA-like Eco28_RS08540 PF01370 NAD dependent epimerase/dehydratase family Eco28_RS08540 PF08338 Domain of unknown function (DUF1731) Eco28_RS08545 PF02152 Dihydroneopterin aldolase Eco28_RS08550 PF00043 Glutathione S-transferase, C-terminal domain Eco28_RS08550 PF02798 Glutathione S-transferase, N-terminal domain Eco28_RS08555 PF14834 Glutathione S-transferase, C-terminal domain Eco28_RS08555 PF02798 Glutathione S-transferase, N-terminal domain Eco28_RS08560 PF12850 Calcineurin-like phosphoesterase superfamily domain Eco28_RS08565 PF00293 NUDIX domain Eco28_RS08570 PF03606 C4-dicarboxylate anaerobic carrier Eco28_RS08575 PF07085 DRTGG domain Eco28_RS08575 PF01515 Phosphate acetyl/butaryl transferase Eco28_RS08580 PF00871 Acetokinase family Eco28_RS08585 PF04217 Protein of unknown function, DUF412 Eco28_RS08590 PF03887 YfbU domain Eco28_RS08595 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS08600 PF02080 TrkA-C domain Eco28_RS08600 PF03600 Citrate transporter Eco28_RS08610 PF00155 Aminotransferase class I and II Eco28_RS08620 PF03466 LysR substrate binding domain Eco28_RS08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS08625 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Eco28_RS08630 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Eco28_RS08635 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Eco28_RS08635 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Eco28_RS08645 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Eco28_RS08645 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Eco28_RS08645 PF10531 SLBB domain Eco28_RS08650 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Eco28_RS08650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS08650 PF01568 Molydopterin dinucleotide binding domain Eco28_RS08650 PF00384 Molybdopterin oxidoreductase Eco28_RS08655 PF00146 NADH dehydrogenase Eco28_RS08660 PF12838 4Fe-4S dicluster domain Eco28_RS08665 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Eco28_RS08670 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Eco28_RS08675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Eco28_RS08675 PF00361 Proton-conducting membrane transporter Eco28_RS08680 PF00361 Proton-conducting membrane transporter Eco28_RS08685 PF00361 Proton-conducting membrane transporter Eco28_RS08705 PF08974 Domain of unknown function (DUF1877) Eco28_RS08720 PF04389 Peptidase family M28 Eco28_RS08730 PF02902 Ulp1 protease family, C-terminal catalytic domain Eco28_RS08735 PF12706 Beta-lactamase superfamily domain Eco28_RS08740 PF13673 Acetyltransferase (GNAT) domain Eco28_RS08745 PF05957 Bacterial protein of unknown function (DUF883) Eco28_RS08750 PF00425 chorismate binding enzyme Eco28_RS08755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Eco28_RS08755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Eco28_RS08755 PF16582 Middle domain of thiamine pyrophosphate Eco28_RS08760 PF12697 Alpha/beta hydrolase family Eco28_RS08765 PF00378 Enoyl-CoA hydratase/isomerase Eco28_RS08770 PF13378 Enolase C-terminal domain-like Eco28_RS08775 PF13193 AMP-binding enzyme C-terminal domain Eco28_RS08775 PF00501 AMP-binding enzyme Eco28_RS08790 PF00892 EamA-like transporter family Eco28_RS08795 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase Eco28_RS08800 PF01522 Polysaccharide deacetylase Eco28_RS08805 PF00551 Formyl transferase Eco28_RS08805 PF02911 Formyl transferase, C-terminal domain Eco28_RS08805 PF01370 NAD dependent epimerase/dehydratase family Eco28_RS08810 PF00535 Glycosyl transferase family 2 Eco28_RS08815 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Eco28_RS08820 PF00300 Histidine phosphatase superfamily (branch 1) Eco28_RS08825 PF00293 NUDIX domain Eco28_RS08830 PF07437 YfaZ precursor Eco28_RS08835 PF00994 Probable molybdopterin binding domain Eco28_RS08840 PF01614 Bacterial transcriptional regulator Eco28_RS08840 PF09339 IclR helix-turn-helix domain Eco28_RS08845 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Eco28_RS08845 PF13378 Enolase C-terminal domain-like Eco28_RS08850 PF07690 Major Facilitator Superfamily Eco28_RS08855 PF03328 HpcH/HpaI aldolase/citrate lyase family Eco28_RS08865 PF04754 Putative transposase, YhgA-like Eco28_RS08870 PF13183 4Fe-4S dicluster domain Eco28_RS08870 PF02754 Cysteine-rich domain Eco28_RS08875 PF00890 FAD binding domain Eco28_RS08880 PF04324 BFD-like [2Fe-2S] binding domain Eco28_RS08880 PF01266 FAD dependent oxidoreductase Eco28_RS08885 PF07690 Major Facilitator Superfamily Eco28_RS08890 PF03009 Glycerophosphoryl diester phosphodiesterase family Eco28_RS08895 PF03466 LysR substrate binding domain Eco28_RS08895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS08905 PF07690 Major Facilitator Superfamily Eco28_RS08915 PF00111 2Fe-2S iron-sulfur cluster binding domain Eco28_RS08920 PF00268 Ribonucleotide reductase, small chain Eco28_RS08925 PF03477 ATP cone domain Eco28_RS08925 PF00317 Ribonucleotide reductase, all-alpha domain Eco28_RS08925 PF02867 Ribonucleotide reductase, barrel domain Eco28_RS08935 PF03797 Autotransporter beta-domain Eco28_RS08935 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat Eco28_RS08935 PF12951 Passenger-associated-transport-repeat Eco28_RS08945 PF03989 DNA gyrase C-terminal domain, beta-propeller Eco28_RS08945 PF00521 DNA gyrase/topoisomerase IV, subunit A Eco28_RS08950 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) Eco28_RS08955 PF06672 Protein of unknown function (DUF1175) Eco28_RS08960 PF01835 MG2 domain Eco28_RS08960 PF00207 Alpha-2-macroglobulin family Eco28_RS08960 PF07703 Alpha-2-macroglobulin bait region domain Eco28_RS08965 PF08486 Stage II sporulation protein Eco28_RS08965 PF10062 Predicted secreted protein (DUF2300) Eco28_RS08970 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) Eco28_RS08980 PF02667 Short chain fatty acid transporter Eco28_RS08985 PF01144 Coenzyme A transferase Eco28_RS08990 PF01144 Coenzyme A transferase Eco28_RS08995 PF00158 Sigma-54 interaction domain Eco28_RS08995 PF00072 Response regulator receiver domain Eco28_RS08995 PF02954 Bacterial regulatory protein, Fis family Eco28_RS09000 PF00989 PAS fold Eco28_RS09000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS09000 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS09005 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS09005 PF09456 RcsC Alpha-Beta-Loop (ABL) Eco28_RS09005 PF00072 Response regulator receiver domain Eco28_RS09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS09010 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS09010 PF00072 Response regulator receiver domain Eco28_RS09015 PF16359 RcsD-ABL domain Eco28_RS09015 PF01627 Hpt domain Eco28_RS09015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS09030 PF00267 Gram-negative porin Eco28_RS09035 PF02424 ApbE family Eco28_RS09040 PF02805 Metal binding domain of Ada Eco28_RS09040 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Eco28_RS09040 PF12833 Helix-turn-helix domain Eco28_RS09040 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Eco28_RS09045 PF13532 2OG-Fe(II) oxygenase superfamily Eco28_RS09050 PF00005 ABC transporter Eco28_RS09055 PF06039 Malate:quinone oxidoreductase (Mqo) Eco28_RS09060 PF03974 Ecotin Eco28_RS09070 PF00037 4Fe-4S binding domain Eco28_RS09070 PF12800 4Fe-4S binding domain Eco28_RS09070 PF13187 4Fe-4S dicluster domain Eco28_RS09075 PF03927 NapD protein Eco28_RS09080 PF00384 Molybdopterin oxidoreductase Eco28_RS09080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS09080 PF01568 Molydopterin dinucleotide binding domain Eco28_RS09085 PF12838 4Fe-4S dicluster domain Eco28_RS09085 PF12800 4Fe-4S binding domain Eco28_RS09090 PF13237 4Fe-4S dicluster domain Eco28_RS09090 PF12801 4Fe-4S binding domain Eco28_RS09095 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Eco28_RS09100 PF03264 NapC/NirT cytochrome c family, N-terminal region Eco28_RS09105 PF00005 ABC transporter Eco28_RS09110 PF03379 CcmB protein Eco28_RS09115 PF01578 Cytochrome C assembly protein Eco28_RS09120 PF04995 Heme exporter protein D (CcmD) Eco28_RS09125 PF03100 CcmE Eco28_RS09130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Eco28_RS09130 PF01578 Cytochrome C assembly protein Eco28_RS09135 PF08534 Redoxin Eco28_RS09140 PF03918 Cytochrome C biogenesis protein Eco28_RS09145 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS09145 PF00072 Response regulator receiver domain Eco28_RS09155 PF16168 Adhesin of bacterial autotransporter system, probable stalk Eco28_RS09155 PF03797 Autotransporter beta-domain Eco28_RS09155 PF03212 Pertactin Eco28_RS09165 PF11893 Domain of unknown function (DUF3413) Eco28_RS09165 PF00884 Sulfatase Eco28_RS09170 PF07208 Protein of unknown function (DUF1414) Eco28_RS09175 PF04245 37-kD nucleoid-associated bacterial protein Eco28_RS09180 PF01386 Ribosomal L25p family Eco28_RS09185 PF04851 Type III restriction enzyme, res subunit Eco28_RS09185 PF00271 Helicase conserved C-terminal domain Eco28_RS09195 PF01479 S4 domain Eco28_RS09195 PF00849 RNA pseudouridylate synthase Eco28_RS09200 PF07690 Major Facilitator Superfamily Eco28_RS09210 PF13989 YejG-like protein Eco28_RS09215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Eco28_RS09215 PF00005 ABC transporter Eco28_RS09220 PF12911 N-terminal TM domain of oligopeptide transport permease C Eco28_RS09220 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS09225 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS09230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS09235 PF00563 EAL domain Eco28_RS09235 PF12792 CSS motif domain associated with EAL Eco28_RS09240 PF00877 NlpC/P60 family Eco28_RS09245 PF01569 PAP2 superfamily Eco28_RS09250 PF07683 Cobalamin synthesis protein cobW C-terminal domain Eco28_RS09250 PF02492 CobW/HypB/UreG, nucleotide-binding domain Eco28_RS09255 PF08125 Mannitol dehydrogenase C-terminal domain Eco28_RS09255 PF01232 Mannitol dehydrogenase Rossmann domain Eco28_RS09260 PF01132 Elongation factor P (EF-P) OB domain Eco28_RS09260 PF08207 Elongation factor P (EF-P) KOW-like domain Eco28_RS09260 PF09285 Elongation factor P, C-terminal Eco28_RS09265 PF03692 Putative zinc- or iron-chelating domain Eco28_RS09270 PF07690 Major Facilitator Superfamily Eco28_RS09275 PF00381 PTS HPr component phosphorylation site Eco28_RS09275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS09280 PF00294 pfkB family carbohydrate kinase Eco28_RS09285 PF02378 Phosphotransferase system, EIIC Eco28_RS09285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS09290 PF00294 pfkB family carbohydrate kinase Eco28_RS09295 PF04227 Indigoidine synthase A like protein Eco28_RS09300 PF01773 Na+ dependent nucleoside transporter N-terminus Eco28_RS09300 PF07662 Na+ dependent nucleoside transporter C-terminus Eco28_RS09305 PF00027 Cyclic nucleotide-binding domain Eco28_RS09310 PF01156 Inosine-uridine preferring nucleoside hydrolase Eco28_RS09315 PF07662 Na+ dependent nucleoside transporter C-terminus Eco28_RS09315 PF01773 Na+ dependent nucleoside transporter N-terminus Eco28_RS09320 PF00294 pfkB family carbohydrate kinase Eco28_RS09325 PF01261 Xylose isomerase-like TIM barrel Eco28_RS09330 PF03601 Conserved hypothetical protein 698 Eco28_RS09335 PF03466 LysR substrate binding domain Eco28_RS09335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS09345 PF00324 Amino acid permease Eco28_RS09355 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS09355 PF00593 TonB dependent receptor Eco28_RS09360 PF00756 Putative esterase Eco28_RS09375 PF01227 GTP cyclohydrolase I Eco28_RS09380 PF04235 Protein of unknown function (DUF418) Eco28_RS09390 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS09395 PF13407 Periplasmic binding protein domain Eco28_RS09400 PF00005 ABC transporter Eco28_RS09405 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS09410 PF01180 Dihydroorotate dehydrogenase Eco28_RS09415 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS09415 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Eco28_RS09420 PF10808 Protein of unknown function (DUF2542) Eco28_RS09425 PF02698 DUF218 domain Eco28_RS09430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Eco28_RS09430 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region Eco28_RS09435 PF04172 LrgB-like family Eco28_RS09440 PF03788 LrgA family Eco28_RS09445 PF01207 Dihydrouridine synthase (Dus) Eco28_RS09465 PF02321 Outer membrane efflux protein Eco28_RS09475 PF09335 SNARE associated Golgi protein Eco28_RS09480 PF04893 Yip1 domain Eco28_RS09485 PF00768 D-alanyl-D-alanine carboxypeptidase Eco28_RS09490 PF01565 FAD binding domain Eco28_RS09490 PF09330 D-lactate dehydrogenase, membrane binding Eco28_RS09495 PF00933 Glycosyl hydrolase family 3 N terminal domain Eco28_RS09495 PF01915 Glycosyl hydrolase family 3 C-terminal domain Eco28_RS09495 PF14310 Fibronectin type III-like domain Eco28_RS09500 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Eco28_RS09505 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS09510 PF00005 ABC transporter Eco28_RS09515 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS09525 PF13411 MerR HTH family regulatory protein Eco28_RS09530 PF07694 5TMR of 5TMR-LYT Eco28_RS09530 PF06580 Histidine kinase Eco28_RS09535 PF04397 LytTr DNA-binding domain Eco28_RS09535 PF00072 Response regulator receiver domain Eco28_RS09540 PF07308 Protein of unknown function (DUF1456) Eco28_RS09545 PF06998 Protein of unknown function (DUF1307) Eco28_RS09550 PF04434 SWIM zinc finger Eco28_RS09555 PF05762 VWA domain containing CoxE-like protein Eco28_RS09565 PF07728 AAA domain (dynein-related subfamily) Eco28_RS09585 PF13569 Domain of unknown function (DUF4132) Eco28_RS09595 PF05406 WGR domain Eco28_RS09600 PF01588 Putative tRNA binding domain Eco28_RS09600 PF09334 tRNA synthetases class I (M) Eco28_RS09605 PF10609 NUBPL iron-transfer P-loop NTPase Eco28_RS09610 PF10836 Protein of unknown function (DUF2574) Eco28_RS09620 PF00419 Fimbrial protein Eco28_RS09625 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS09625 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS09630 PF00577 Outer membrane usher protein Eco28_RS09630 PF13953 PapC C-terminal domain Eco28_RS09630 PF13954 PapC N-terminal domain Eco28_RS09645 PF00577 Outer membrane usher protein Eco28_RS09645 PF13954 PapC N-terminal domain Eco28_RS09645 PF13953 PapC C-terminal domain Eco28_RS09650 PF00419 Fimbrial protein Eco28_RS09655 PF11776 Nickel/cobalt transporter regulator Eco28_RS09660 PF03824 High-affinity nickel-transport protein Eco28_RS09665 PF02583 Metal-sensitive transcriptional repressor Eco28_RS09670 PF02110 Hydroxyethylthiazole kinase family Eco28_RS09675 PF08543 Phosphomethylpyrimidine kinase Eco28_RS09680 PF01183 Glycosyl hydrolases family 25 Eco28_RS09685 PF07702 UTRA domain Eco28_RS09685 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS09690 PF00294 pfkB family carbohydrate kinase Eco28_RS09695 PF03747 ADP-ribosylglycohydrolase Eco28_RS09700 PF03825 Nucleoside H+ symporter Eco28_RS09705 PF01791 DeoC/LacD family aldolase Eco28_RS09710 PF01116 Fructose-bisphosphate aldolase class-II Eco28_RS09715 PF08013 Tagatose 6 phosphate kinase Eco28_RS09725 PF08013 Tagatose 6 phosphate kinase Eco28_RS09730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS09735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS09740 PF03611 PTS system sugar-specific permease component Eco28_RS09745 PF00107 Zinc-binding dehydrogenase Eco28_RS09745 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS09750 PF08220 DeoR-like helix-turn-helix domain Eco28_RS09755 PF00781 Diacylglycerol kinase catalytic domain Eco28_RS09785 PF04606 Ogr/Delta-like zinc finger Eco28_RS09790 PF16325 Peptidase family U32 C-terminal domain Eco28_RS09790 PF01136 Peptidase family U32 Eco28_RS09795 PF07411 Domain of unknown function (DUF1508) Eco28_RS09800 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS09800 PF00072 Response regulator receiver domain Eco28_RS09805 PF00672 HAMP domain Eco28_RS09805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS09805 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS09810 PF07690 Major Facilitator Superfamily Eco28_RS09815 PF00873 AcrB/AcrD/AcrF family Eco28_RS09820 PF00873 AcrB/AcrD/AcrF family Eco28_RS09825 PF13533 Biotin-lipoyl like Eco28_RS09830 PF00092 von Willebrand factor type A domain Eco28_RS09845 PF00012 Hsp70 protein Eco28_RS09855 PF00730 HhH-GPD superfamily base excision DNA repair protein Eco28_RS09855 PF06029 AlkA N-terminal domain Eco28_RS09860 PF13426 PAS domain Eco28_RS09860 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS09860 PF00563 EAL domain Eco28_RS09860 PF05231 MASE1 Eco28_RS09860 PF08447 PAS fold Eco28_RS09860 PF08448 PAS fold Eco28_RS09865 PF00485 Phosphoribulokinase / Uridine kinase family Eco28_RS09870 PF00692 dUTPase Eco28_RS09875 PF05170 AsmA family Eco28_RS09880 PF00571 CBS domain Eco28_RS09880 PF03741 Integral membrane protein TerC family Eco28_RS09880 PF03471 Transporter associated domain Eco28_RS09885 PF18412 Outer-membrane lipoprotein Wza C-terminal domain Eco28_RS09885 PF10531 SLBB domain Eco28_RS09885 PF02563 Polysaccharide biosynthesis/export protein Eco28_RS09890 PF01451 Low molecular weight phosphotyrosine protein phosphatase Eco28_RS09895 PF13807 G-rich domain on putative tyrosine kinase Eco28_RS09895 PF13614 AAA domain Eco28_RS09895 PF02706 Chain length determinant protein Eco28_RS09900 PF00535 Glycosyl transferase family 2 Eco28_RS09905 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS09910 PF13439 Glycosyltransferase Family 4 Eco28_RS09910 PF00534 Glycosyl transferases group 1 Eco28_RS09920 PF00535 Glycosyl transferase family 2 Eco28_RS09925 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS09930 PF16363 GDP-mannose 4,6 dehydratase Eco28_RS09935 PF01370 NAD dependent epimerase/dehydratase family Eco28_RS09940 PF00293 NUDIX domain Eco28_RS09945 PF00534 Glycosyl transferases group 1 Eco28_RS09945 PF13579 Glycosyl transferase 4-like domain Eco28_RS09950 PF00483 Nucleotidyl transferase Eco28_RS09950 PF01050 Mannose-6-phosphate isomerase Eco28_RS09955 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Eco28_RS09955 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Eco28_RS09955 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Eco28_RS09955 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Eco28_RS09960 PF02397 Bacterial sugar transferase Eco28_RS09970 PF04230 Polysaccharide pyruvyl transferase Eco28_RS09975 PF00534 Glycosyl transferases group 1 Eco28_RS09975 PF13439 Glycosyltransferase Family 4 Eco28_RS09985 PF00483 Nucleotidyl transferase Eco28_RS09995 PF16363 GDP-mannose 4,6 dehydratase Eco28_RS10000 PF00483 Nucleotidyl transferase Eco28_RS10010 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Eco28_RS10030 PF01575 MaoC like domain Eco28_RS10035 PF00535 Glycosyl transferase family 2 Eco28_RS10050 PF08485 Polysaccharide biosynthesis protein C-terminal Eco28_RS10050 PF02719 Polysaccharide biosynthesis protein Eco28_RS10060 PF02350 UDP-N-acetylglucosamine 2-epimerase Eco28_RS10075 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Eco28_RS10075 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Eco28_RS10080 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Eco28_RS10080 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Eco28_RS10080 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Eco28_RS10085 PF02706 Chain length determinant protein Eco28_RS10095 PF01502 Phosphoribosyl-AMP cyclohydrolase Eco28_RS10095 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Eco28_RS10100 PF00977 Histidine biosynthesis protein Eco28_RS10105 PF00977 Histidine biosynthesis protein Eco28_RS10110 PF00117 Glutamine amidotransferase class-I Eco28_RS10115 PF00475 Imidazoleglycerol-phosphate dehydratase Eco28_RS10115 PF08645 Polynucleotide kinase 3 phosphatase Eco28_RS10120 PF00155 Aminotransferase class I and II Eco28_RS10125 PF00815 Histidinol dehydrogenase Eco28_RS10130 PF08029 HisG, C-terminal domain Eco28_RS10130 PF01634 ATP phosphoribosyltransferase Eco28_RS10145 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system Eco28_RS10150 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Eco28_RS10155 PF01370 NAD dependent epimerase/dehydratase family Eco28_RS10160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS10160 PF03466 LysR substrate binding domain Eco28_RS10165 PF13520 Amino acid permease Eco28_RS10170 PF04143 Sulphur transport Eco28_RS10175 PF01206 Sulfurtransferase TusA Eco28_RS10180 PF00929 Exonuclease Eco28_RS10180 PF08411 Exonuclease C-terminal Eco28_RS10185 PF07943 Penicillin-binding protein 5, C-terminal domain Eco28_RS10185 PF00768 D-alanyl-D-alanine carboxypeptidase Eco28_RS10190 PF06445 GyrI-like small molecule binding domain Eco28_RS10195 PF04632 Fusaric acid resistance protein family Eco28_RS10200 PF04363 Protein of unknown function (DUF496) Eco28_RS10205 PF10662 Ethanolamine utilisation - propanediol utilisation Eco28_RS10210 PF13817 IS66 C-terminal element Eco28_RS10210 PF13007 Transposase C of IS166 homeodomain Eco28_RS10210 PF13005 zinc-finger binding domain of transposase IS66 Eco28_RS10210 PF03050 Transposase IS66 family Eco28_RS10220 PF06755 CbtA_toxin of type IV toxin-antitoxin system Eco28_RS10225 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A Eco28_RS10230 PF06174 Protein of unknown function (DUF987) Eco28_RS10235 PF04002 RadC-like JAB domain Eco28_RS10240 PF03230 Antirestriction protein Eco28_RS10245 PF06067 Domain of unknown function (DUF932) Eco28_RS10270 PF13990 YjcZ-like protein Eco28_RS10275 PF00350 Dynamin family Eco28_RS10285 PF13817 IS66 C-terminal element Eco28_RS10285 PF03050 Transposase IS66 family Eco28_RS10285 PF13007 Transposase C of IS166 homeodomain Eco28_RS10285 PF13005 zinc-finger binding domain of transposase IS66 Eco28_RS10290 PF05717 IS66 Orf2 like protein Eco28_RS10295 PF00665 Integrase core domain Eco28_RS10295 PF01527 Transposase Eco28_RS10295 PF13276 HTH-like domain Eco28_RS10320 PF00665 Integrase core domain Eco28_RS10325 PF01527 Transposase Eco28_RS10330 PF00665 Integrase core domain Eco28_RS10330 PF13936 Helix-turn-helix domain Eco28_RS10335 PF01527 Transposase Eco28_RS10350 PF00665 Integrase core domain Eco28_RS10350 PF02796 Helix-turn-helix domain of resolvase Eco28_RS10355 PF01695 IstB-like ATP binding protein Eco28_RS10420 PF02126 Phosphotriesterase family Eco28_RS10455 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS10485 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Eco28_RS10490 PF02654 Cobalamin-5-phosphate synthase Eco28_RS10495 PF02277 Phosphoribosyltransferase Eco28_RS10500 PF03734 L,D-transpeptidase catalytic domain Eco28_RS10500 PF17969 L,D-transpeptidase C-terminal domain Eco28_RS10510 PF03466 LysR substrate binding domain Eco28_RS10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS10515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS10515 PF03466 LysR substrate binding domain Eco28_RS10525 PF01554 MatE Eco28_RS10540 PF01709 Transcriptional regulator Eco28_RS10545 PF01048 Phosphorylase superfamily Eco28_RS10545 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Eco28_RS10550 PF00083 Sugar (and other) transporter Eco28_RS10550 PF07690 Major Facilitator Superfamily Eco28_RS10575 PF06167 Glucose-regulated metallo-peptidase M90 Eco28_RS10590 PF01292 Prokaryotic cytochrome b561 Eco28_RS10595 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Eco28_RS10605 PF13737 Transposase DDE domain Eco28_RS10610 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Eco28_RS10615 PF01794 Ferric reductase like transmembrane component Eco28_RS10620 PF00174 Oxidoreductase molybdopterin binding domain Eco28_RS10625 PF00576 HIUase/Transthyretin family Eco28_RS10630 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS10630 PF00072 Response regulator receiver domain Eco28_RS10635 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS10635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS10650 PF01966 HD domain Eco28_RS10655 PF18284 DNA methylase N-terminal domain Eco28_RS10655 PF00145 C-5 cytosine-specific DNA methylase Eco28_RS10660 PF03852 DNA mismatch endonuclease Vsr Eco28_RS10665 PF00892 EamA-like transporter family Eco28_RS10670 PF05661 Protein of unknown function (DUF808) Eco28_RS10675 PF09926 Uncharacterized small protein (DUF2158) Eco28_RS10685 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS10685 PF17151 Periplasmic sensor domain Eco28_RS10695 PF10733 Protein of unknown function (DUF2525) Eco28_RS10705 PF10781 Dextransucrase DSRB Eco28_RS10710 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS10715 PF01311 Bacterial export proteins, family 1 Eco28_RS10720 PF01313 Bacterial export proteins, family 3 Eco28_RS10725 PF00813 FliP family Eco28_RS10730 PF04347 Flagellar biosynthesis protein, FliO Eco28_RS10735 PF16973 Flagellar motor switch protein FliN N-terminal Eco28_RS10735 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Eco28_RS10740 PF02154 Flagellar motor switch protein FliM Eco28_RS10740 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Eco28_RS10745 PF03748 Flagellar basal body-associated protein FliL Eco28_RS10750 PF02120 Flagellar hook-length control protein FliK Eco28_RS10755 PF02050 Flagellar FliJ protein Eco28_RS10760 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Eco28_RS10760 PF18269 T3SS EscN ATPase C-terminal domain Eco28_RS10765 PF02108 Flagellar assembly protein FliH Eco28_RS10770 PF14841 FliG middle domain Eco28_RS10770 PF14842 FliG N-terminal domain Eco28_RS10770 PF01706 FliG C-terminal domain Eco28_RS10775 PF08345 Flagellar M-ring protein C-terminal Eco28_RS10775 PF01514 Secretory protein of YscJ/FliF family Eco28_RS10780 PF02049 Flagellar hook-basal body complex protein FliE Eco28_RS10790 PF17607 Family of unknown function (DUF5503) Eco28_RS10800 PF00583 Acetyltransferase (GNAT) family Eco28_RS10805 PF02586 SOS response associated peptidase (SRAP) Eco28_RS10810 PF01206 Sulfurtransferase TusA Eco28_RS10815 PF04143 Sulphur transport Eco28_RS10825 PF13987 YedD-like protein Eco28_RS10830 PF00128 Alpha amylase, catalytic domain Eco28_RS10830 PF02806 Alpha amylase, C-terminal all-beta domain Eco28_RS10835 PF05400 Flagellar protein FliT Eco28_RS10840 PF02561 Flagellar protein FliS Eco28_RS10845 PF02465 Flagellar hook-associated protein 2 N-terminus Eco28_RS10845 PF07195 Flagellar hook-associated protein 2 C-terminus Eco28_RS10855 PF12445 Flagellin protein Eco28_RS10855 PF00700 Bacterial flagellin C-terminal helical region Eco28_RS10855 PF00669 Bacterial flagellin N-terminal helical region Eco28_RS10860 PF04545 Sigma-70, region 4 Eco28_RS10860 PF04542 Sigma-70 region 2 Eco28_RS10860 PF04539 Sigma-70 region 3 Eco28_RS10865 PF02899 Phage integrase, N-terminal SAM-like domain Eco28_RS10870 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS10875 PF00291 Pyridoxal-phosphate dependent enzyme Eco28_RS10880 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS10885 PF00005 ABC transporter Eco28_RS10890 PF03472 Autoinducer binding domain Eco28_RS10890 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS10895 PF10769 Protein of unknown function (DUF2594) Eco28_RS10900 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS10900 PF00072 Response regulator receiver domain Eco28_RS10905 PF01541 GIY-YIG catalytic domain Eco28_RS10905 PF08459 UvrC Helix-hairpin-helix N-terminal Eco28_RS10905 PF02151 UvrB/uvrC motif Eco28_RS10910 PF01066 CDP-alcohol phosphatidyltransferase Eco28_RS10930 PF02810 SEC-C motif Eco28_RS10930 PF03695 Uncharacterised protein family (UPF0149) Eco28_RS10935 PF03222 Tryptophan/tyrosine permease family Eco28_RS10940 PF10678 Protein of unknown function (DUF2492) Eco28_RS10945 PF00210 Ferritin-like domain Eco28_RS10950 PF13992 YecR-like lipoprotein Eco28_RS10960 PF10964 Protein of unknown function (DUF2766) Eco28_RS10965 PF00210 Ferritin-like domain Eco28_RS10975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Eco28_RS10980 PF00005 ABC transporter Eco28_RS10985 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS10990 PF02358 Trehalose-phosphatase Eco28_RS10995 PF00982 Glycosyltransferase family 20 Eco28_RS11000 PF00582 Universal stress protein family Eco28_RS11005 PF05247 Flagellar transcriptional activator (FlhD) Eco28_RS11010 PF05280 Flagellar transcriptional activator (FlhC) Eco28_RS11015 PF01618 MotA/TolQ/ExbB proton channel family Eco28_RS11020 PF00691 OmpA family Eco28_RS11020 PF13677 Membrane MotB of proton-channel complex MotA/MotB Eco28_RS11025 PF01627 Hpt domain Eco28_RS11025 PF02895 Signal transducing histidine kinase, homodimeric domain Eco28_RS11025 PF01584 CheW-like domain Eco28_RS11025 PF09078 CheY binding Eco28_RS11025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS11030 PF01584 CheW-like domain Eco28_RS11035 PF02203 Tar ligand binding domain homologue Eco28_RS11035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS11035 PF00672 HAMP domain Eco28_RS11040 PF02203 Tar ligand binding domain homologue Eco28_RS11040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS11040 PF00672 HAMP domain Eco28_RS11045 PF01739 CheR methyltransferase, SAM binding domain Eco28_RS11045 PF03705 CheR methyltransferase, all-alpha domain Eco28_RS11050 PF00072 Response regulator receiver domain Eco28_RS11050 PF01339 CheB methylesterase Eco28_RS11055 PF00072 Response regulator receiver domain Eco28_RS11060 PF04344 Chemotaxis phosphatase, CheZ Eco28_RS11065 PF01312 FlhB HrpN YscU SpaS Family Eco28_RS11070 PF00771 FHIPEP family Eco28_RS11075 PF06366 Flagellar protein FlhE Eco28_RS11080 PF07007 Lysozyme inhibitor LprI Eco28_RS11085 PF05746 DALR anticodon binding domain Eco28_RS11085 PF00750 tRNA synthetases class I (R) Eco28_RS11085 PF03485 Arginyl tRNA synthetase N terminal domain Eco28_RS11095 PF06185 YecM protein Eco28_RS11100 PF03932 CutC family Eco28_RS11105 PF03264 NapC/NirT cytochrome c family, N-terminal region Eco28_RS11110 PF00384 Molybdopterin oxidoreductase Eco28_RS11110 PF18364 Molybdopterin oxidoreductase N-terminal domain Eco28_RS11110 PF01568 Molydopterin dinucleotide binding domain Eco28_RS11115 PF08003 Protein of unknown function (DUF1698) Eco28_RS11120 PF13649 Methyltransferase domain Eco28_RS11125 PF01124 MAPEG family Eco28_RS11130 PF01904 Protein of unknown function DUF72 Eco28_RS11135 PF00857 Isochorismatase family Eco28_RS11140 PF01336 OB-fold nucleic acid binding domain Eco28_RS11140 PF00152 tRNA synthetases class II (D, K and N) Eco28_RS11140 PF02938 GAD domain Eco28_RS11145 PF00293 NUDIX domain Eco28_RS11150 PF01709 Transcriptional regulator Eco28_RS11155 PF02075 Crossover junction endodeoxyribonuclease RuvC Eco28_RS11160 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Eco28_RS11170 PF07499 RuvA, C-terminal domain Eco28_RS11170 PF01330 RuvA N terminal domain Eco28_RS11175 PF05491 RuvB C-terminal winged helix domain Eco28_RS11175 PF17864 RuvB AAA lid domain Eco28_RS11175 PF05496 Holliday junction DNA helicase RuvB P-loop domain Eco28_RS11180 PF00950 ABC 3 transport family Eco28_RS11185 PF00005 ABC transporter Eco28_RS11190 PF01297 Zinc-uptake complex component A periplasmic Eco28_RS11195 PF01476 LysM domain Eco28_RS11195 PF01551 Peptidase family M23 Eco28_RS11195 PF08525 Opacity-associated protein A N-terminal motif Eco28_RS11200 PF03279 Bacterial lipid A biosynthesis acyltransferase Eco28_RS11205 PF00224 Pyruvate kinase, barrel domain Eco28_RS11205 PF02887 Pyruvate kinase, alpha/beta domain Eco28_RS11210 PF01418 Helix-turn-helix domain, rpiR family Eco28_RS11210 PF01380 SIS domain Eco28_RS11215 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Eco28_RS11215 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Eco28_RS11220 PF00920 Dehydratase family Eco28_RS11225 PF01081 KDPG and KHG aldolase Eco28_RS11230 PF02222 ATP-grasp domain Eco28_RS11235 PF07130 YebG protein Eco28_RS11240 PF13995 YebF-like protein Eco28_RS11245 PF04391 Protein of unknown function (DUF533) Eco28_RS11260 PF00929 Exonuclease Eco28_RS11265 PF00795 Carbon-nitrogen hydrolase Eco28_RS11270 PF06440 DNA polymerase III, theta subunit Eco28_RS11275 PF04234 CopC domain Eco28_RS11280 PF05425 Copper resistance protein D Eco28_RS11285 PF10709 Protein of unknown function (DUF2511) Eco28_RS11290 PF00149 Calcineurin-like phosphoesterase Eco28_RS11295 PF07358 Protein of unknown function (DUF1482) Eco28_RS11300 PF07351 Protein of unknown function (DUF1480) Eco28_RS11305 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF Eco28_RS11305 PF01189 16S rRNA methyltransferase RsmB/F Eco28_RS11305 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF Eco28_RS11310 PF02470 MlaD protein Eco28_RS11315 PF04403 Paraquat-inducible protein A Eco28_RS11320 PF13185 GAF domain Eco28_RS11325 PF04352 ProQ/FINO family Eco28_RS11325 PF17516 ProQ C-terminal domain Eco28_RS11330 PF17804 Tail specific protease N-terminal domain Eco28_RS11330 PF11818 C-terminal domain of tail specific protease (DUF3340) Eco28_RS11330 PF00595 PDZ domain Eco28_RS11330 PF03572 Peptidase family S41 Eco28_RS11335 PF01435 Peptidase family M48 Eco28_RS11340 PF07690 Major Facilitator Superfamily Eco28_RS11345 PF07690 Major Facilitator Superfamily Eco28_RS11350 PF09339 IclR helix-turn-helix domain Eco28_RS11350 PF01614 Bacterial transcriptional regulator Eco28_RS11355 PF13996 YobH-like protein Eco28_RS11360 PF13998 MgrB protein Eco28_RS11365 PF13974 YebO-like protein Eco28_RS11375 PF10736 Protein of unknown function (DUF2627) Eco28_RS11380 PF00313 'Cold-shock' DNA-binding domain Eco28_RS11385 PF13847 Methyltransferase domain Eco28_RS11390 PF02659 Putative manganese efflux pump Eco28_RS11400 PF06173 Protein of unknown function (DUF986) Eco28_RS11405 PF03613 PTS system mannose/fructose/sorbose family IID component Eco28_RS11410 PF03609 PTS system sorbose-specific iic component Eco28_RS11415 PF03830 PTS system sorbose subfamily IIB component Eco28_RS11415 PF03610 PTS system fructose IIA component Eco28_RS11430 PF03741 Integral membrane protein TerC family Eco28_RS11430 PF03471 Transporter associated domain Eco28_RS11435 PF00563 EAL domain Eco28_RS11435 PF12792 CSS motif domain associated with EAL Eco28_RS11440 PF03315 Serine dehydratase beta chain Eco28_RS11440 PF03313 Serine dehydratase alpha chain Eco28_RS11445 PF00293 NUDIX domain Eco28_RS11450 PF04715 Anthranilate synthase component I, N terminal region Eco28_RS11450 PF00425 chorismate binding enzyme Eco28_RS11455 PF03701 Uncharacterised protein family (UPF0181) Eco28_RS11460 PF08986 Domain of unknown function (DUF1889) Eco28_RS11465 PF01042 Endoribonuclease L-PSP Eco28_RS11470 PF04851 Type III restriction enzyme, res subunit Eco28_RS11470 PF13307 Helicase C-terminal domain Eco28_RS11475 PF00814 Glycoprotease family Eco28_RS11480 PF03843 Outer membrane lipoprotein Slp family Eco28_RS11485 PF00501 AMP-binding enzyme Eco28_RS11485 PF13193 AMP-binding enzyme C-terminal domain Eco28_RS11490 PF00570 HRDC domain Eco28_RS11490 PF01612 3'-5' exonuclease Eco28_RS11495 PF00111 2Fe-2S iron-sulfur cluster binding domain Eco28_RS11495 PF00970 Oxidoreductase FAD-binding domain Eco28_RS11495 PF00175 Oxidoreductase NAD-binding domain Eco28_RS11500 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Eco28_RS11500 PF00355 Rieske [2Fe-2S] domain Eco28_RS11505 PF02028 BCCT, betaine/carnitine/choline family transporter Eco28_RS11510 PF00180 Isocitrate/isopropylmalate dehydrogenase Eco28_RS11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS11515 PF03466 LysR substrate binding domain Eco28_RS11520 PF01810 LysE type translocator Eco28_RS11525 PF09313 Domain of unknown function (DUF1971) Eco28_RS11530 PF08956 Domain of unknown function (DUF1869) Eco28_RS11535 PF04226 Transglycosylase associated protein Eco28_RS11550 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS11550 PF13185 GAF domain Eco28_RS11555 PF03891 Domain of unknown function (DUF333) Eco28_RS11560 PF04343 Protein of unknown function, DUF488 Eco28_RS11565 PF07690 Major Facilitator Superfamily Eco28_RS11570 PF02311 AraC-like ligand binding domain Eco28_RS11570 PF12833 Helix-turn-helix domain Eco28_RS11575 PF04284 Protein of unknown function (DUF441) Eco28_RS11585 PF04073 Aminoacyl-tRNA editing domain Eco28_RS11590 PF17155 Gammaproteobacterial periplasmic sensor domain Eco28_RS11590 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS11595 PF17158 Membrane-associated sensor, integral membrane domain Eco28_RS11595 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS11600 PF04285 Protein of unknown function (DUF444) Eco28_RS11605 PF06798 PrkA serine protein kinase C-terminal domain Eco28_RS11605 PF08298 PrkA AAA domain Eco28_RS11610 PF06629 MltA-interacting protein MipA Eco28_RS11615 PF00248 Aldo/keto reductase family Eco28_RS11620 PF01263 Aldose 1-epimerase Eco28_RS11625 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Eco28_RS11625 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Eco28_RS11630 PF01641 SelR domain Eco28_RS11635 PF07023 Protein of unknown function (DUF1315) Eco28_RS11640 PF00107 Zinc-binding dehydrogenase Eco28_RS11640 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS11645 PF00083 Sugar (and other) transporter Eco28_RS11650 PF00107 Zinc-binding dehydrogenase Eco28_RS11650 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS11655 PF01116 Fructose-bisphosphate aldolase class-II Eco28_RS11660 PF00294 pfkB family carbohydrate kinase Eco28_RS11665 PF00248 Aldo/keto reductase family Eco28_RS11670 PF00455 DeoR C terminal sensor domain Eco28_RS11670 PF08220 DeoR-like helix-turn-helix domain Eco28_RS11680 PF00083 Sugar (and other) transporter Eco28_RS11685 PF00857 Isochorismatase family Eco28_RS11690 PF00710 Asparaginase, N-terminal Eco28_RS11690 PF17763 Glutaminase/Asparaginase C-terminal domain Eco28_RS11695 PF01343 Peptidase family S49 Eco28_RS11705 PF00881 Nitroreductase family Eco28_RS11715 PF02769 AIR synthase related protein, C-terminal domain Eco28_RS11715 PF00586 AIR synthase related protein, N-terminal domain Eco28_RS11720 PF01131 DNA topoisomerase Eco28_RS11720 PF01751 Toprim domain Eco28_RS11725 PF06889 Protein of unknown function (DUF1266) Eco28_RS11730 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Eco28_RS11730 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Eco28_RS11735 PF07383 Protein of unknown function (DUF1496) Eco28_RS11740 PF00293 NUDIX domain Eco28_RS11745 PF01066 CDP-alcohol phosphatidyltransferase Eco28_RS11750 PF00581 Rhodanese-like domain Eco28_RS11755 PF00005 ABC transporter Eco28_RS11760 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS11765 PF13416 Bacterial extracellular solute-binding protein Eco28_RS11770 PF02627 Carboxymuconolactone decarboxylase family Eco28_RS11775 PF09335 SNARE associated Golgi protein Eco28_RS11785 PF09335 SNARE associated Golgi protein Eco28_RS11790 PF03372 Endonuclease/Exonuclease/phosphatase family Eco28_RS11795 PF00202 Aminotransferase class-III Eco28_RS11800 PF04958 Arginine N-succinyltransferase beta subunit Eco28_RS11805 PF00171 Aldehyde dehydrogenase family Eco28_RS11810 PF04996 Succinylarginine dihydrolase Eco28_RS11815 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Eco28_RS11820 PF07813 LTXXQ motif family protein Eco28_RS11825 PF05962 HutD Eco28_RS11835 PF02540 NAD synthase Eco28_RS11840 PF04355 SmpA / OmlA family Eco28_RS11850 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS11855 PF02378 Phosphotransferase system, EIIC Eco28_RS11860 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Eco28_RS11865 PF12833 Helix-turn-helix domain Eco28_RS11865 PF07883 Cupin domain Eco28_RS11870 PF11975 Family 4 glycosyl hydrolase C-terminal domain Eco28_RS11870 PF02056 Family 4 glycosyl hydrolase Eco28_RS11875 PF04794 YdjC-like protein Eco28_RS11880 PF00199 Catalase Eco28_RS11880 PF06628 Catalase-related immune-responsive Eco28_RS11880 PF18011 C-terminal domain found in long catalases Eco28_RS11885 PF10729 Cell division activator CedA Eco28_RS11895 PF00375 Sodium:dicarboxylate symporter family Eco28_RS11900 PF04307 LexA-binding, inner membrane-associated putative hydrolase Eco28_RS11905 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS11910 PF14002 YniB-like protein Eco28_RS11915 PF03881 Fructosamine kinase Eco28_RS11920 PF11080 Endoribonuclease GhoS Eco28_RS11925 PF00294 pfkB family carbohydrate kinase Eco28_RS11930 PF04338 Protein of unknown function, DUF481 Eco28_RS11945 PF03129 Anticodon binding domain Eco28_RS11945 PF02824 TGS domain Eco28_RS11945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Eco28_RS11945 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Eco28_RS11950 PF00707 Translation initiation factor IF-3, C-terminal domain Eco28_RS11950 PF05198 Translation initiation factor IF-3, N-terminal domain Eco28_RS11955 PF01632 Ribosomal protein L35 Eco28_RS11960 PF00453 Ribosomal protein L20 Eco28_RS11965 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Eco28_RS11965 PF01409 tRNA synthetases class II core domain (F) Eco28_RS11970 PF03484 tRNA synthetase B5 domain Eco28_RS11970 PF03483 B3/4 domain Eco28_RS11970 PF03147 Ferredoxin-fold anticodon binding domain Eco28_RS11970 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Eco28_RS11970 PF01588 Putative tRNA binding domain Eco28_RS11975 PF00216 Bacterial DNA-binding protein Eco28_RS11980 PF01032 FecCD transport family Eco28_RS11985 PF00255 Glutathione peroxidase Eco28_RS11990 PF00005 ABC transporter Eco28_RS11995 PF00877 NlpC/P60 family Eco28_RS12000 PF00563 EAL domain Eco28_RS12005 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Eco28_RS12010 PF10636 Hemin uptake protein hemP Eco28_RS12015 PF00793 DAHP synthetase I family Eco28_RS12020 PF03618 Kinase/pyrophosphorylase Eco28_RS12030 PF02896 PEP-utilising enzyme, TIM barrel domain Eco28_RS12030 PF00391 PEP-utilising enzyme, mobile domain Eco28_RS12030 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Eco28_RS12035 PF00939 Sodium:sulfate symporter transmembrane region Eco28_RS12040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Eco28_RS12040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS12060 PF13193 AMP-binding enzyme C-terminal domain Eco28_RS12060 PF00501 AMP-binding enzyme Eco28_RS12070 PF01494 FAD binding domain Eco28_RS12075 PF00766 Electron transfer flavoprotein FAD-binding domain Eco28_RS12075 PF01012 Electron transfer flavoprotein domain Eco28_RS12080 PF01012 Electron transfer flavoprotein domain Eco28_RS12090 PF12833 Helix-turn-helix domain Eco28_RS12090 PF02311 AraC-like ligand binding domain Eco28_RS12095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Eco28_RS12095 PF02770 Acyl-CoA dehydrogenase, middle domain Eco28_RS12095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Eco28_RS12100 PF01144 Coenzyme A transferase Eco28_RS12105 PF01487 Type I 3-dehydroquinase Eco28_RS12110 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Eco28_RS12110 PF08501 Shikimate dehydrogenase substrate binding domain Eco28_RS12115 PF07690 Major Facilitator Superfamily Eco28_RS12125 PF07690 Major Facilitator Superfamily Eco28_RS12130 PF07690 Major Facilitator Superfamily Eco28_RS12135 PF08965 Domain of unknown function (DUF1870) Eco28_RS12145 PF08965 Domain of unknown function (DUF1870) Eco28_RS12155 PF01594 AI-2E family transporter Eco28_RS12160 PF13183 4Fe-4S dicluster domain Eco28_RS12160 PF02913 FAD linked oxidases, C-terminal domain Eco28_RS12160 PF01565 FAD binding domain Eco28_RS12165 PF03061 Thioesterase superfamily Eco28_RS12170 PF15930 Domain of unknown function Eco28_RS12175 PF01521 Iron-sulphur cluster biosynthesis Eco28_RS12180 PF01458 Uncharacterized protein family (UPF0051) Eco28_RS12185 PF00005 ABC transporter Eco28_RS12190 PF01458 Uncharacterized protein family (UPF0051) Eco28_RS12195 PF00266 Aminotransferase class-V Eco28_RS12200 PF02657 Fe-S metabolism associated domain Eco28_RS12205 PF03734 L,D-transpeptidase catalytic domain Eco28_RS12205 PF17969 L,D-transpeptidase C-terminal domain Eco28_RS12205 PF01476 LysM domain Eco28_RS12210 PF04728 Lipoprotein leucine-zipper Eco28_RS12215 PF02887 Pyruvate kinase, alpha/beta domain Eco28_RS12215 PF00224 Pyruvate kinase, barrel domain Eco28_RS12220 PF10965 Protein of unknown function (DUF2767) Eco28_RS12225 PF13247 4Fe-4S dicluster domain Eco28_RS12225 PF12800 4Fe-4S binding domain Eco28_RS12230 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 Eco28_RS12230 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain Eco28_RS12240 PF13247 4Fe-4S dicluster domain Eco28_RS12245 PF01292 Prokaryotic cytochrome b561 Eco28_RS12255 PF13454 FAD-NAD(P)-binding Eco28_RS12260 PF08803 Putative mono-oxygenase ydhR Eco28_RS12275 PF16168 Adhesin of bacterial autotransporter system, probable stalk Eco28_RS12275 PF03212 Pertactin Eco28_RS12280 PF01554 MatE Eco28_RS12285 PF00677 Lumazine binding domain Eco28_RS12295 PF07690 Major Facilitator Superfamily Eco28_RS12300 PF03466 LysR substrate binding domain Eco28_RS12300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS12305 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS12320 PF07690 Major Facilitator Superfamily Eco28_RS12325 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Eco28_RS12325 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Eco28_RS12330 PF00877 NlpC/P60 family Eco28_RS12335 PF00462 Glutaredoxin Eco28_RS12340 PF08494 DEAD/H associated Eco28_RS12340 PF00271 Helicase conserved C-terminal domain Eco28_RS12340 PF00270 DEAD/DEAH box helicase Eco28_RS12345 PF00929 Exonuclease Eco28_RS12350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Eco28_RS12355 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Eco28_RS12360 PF16925 Tetracyclin repressor-like, C-terminal domain Eco28_RS12360 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS12365 PF06945 Protein of unknown function (DUF1289) Eco28_RS12370 PF00248 Aldo/keto reductase family Eco28_RS12375 PF00080 Copper/zinc superoxide dismutase (SODC) Eco28_RS12380 PF04632 Fusaric acid resistance protein family Eco28_RS12385 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS12385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS12390 PF07869 Protein of unknown function (DUF1656) Eco28_RS12395 PF01047 MarR family Eco28_RS12400 PF05433 Glycine zipper 2TM domain Eco28_RS12405 PF03702 Anhydro-N-acetylmuramic acid kinase Eco28_RS12410 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme Eco28_RS12415 PF01243 Pyridoxamine 5'-phosphate oxidase Eco28_RS12415 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Eco28_RS12420 PF00579 tRNA synthetases class I (W and Y) Eco28_RS12420 PF01479 S4 domain Eco28_RS12425 PF08543 Phosphomethylpyrimidine kinase Eco28_RS12430 PF02798 Glutathione S-transferase, N-terminal domain Eco28_RS12430 PF00043 Glutathione S-transferase, C-terminal domain Eco28_RS12435 PF00854 POT family Eco28_RS12445 PF00730 HhH-GPD superfamily base excision DNA repair protein Eco28_RS12445 PF00633 Helix-hairpin-helix motif Eco28_RS12445 PF10576 Iron-sulfur binding domain of endonuclease III Eco28_RS12450 PF02508 Rnf-Nqr subunit, membrane protein Eco28_RS12455 PF04205 FMN-binding domain Eco28_RS12460 PF03116 NQR2, RnfD, RnfE family Eco28_RS12465 PF10531 SLBB domain Eco28_RS12465 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Eco28_RS12465 PF12838 4Fe-4S dicluster domain Eco28_RS12465 PF13375 RnfC Barrel sandwich hybrid domain Eco28_RS12475 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Eco28_RS12475 PF12838 4Fe-4S dicluster domain Eco28_RS12475 PF10531 SLBB domain Eco28_RS12475 PF13375 RnfC Barrel sandwich hybrid domain Eco28_RS12480 PF04060 Putative Fe-S cluster Eco28_RS12485 PF02508 Rnf-Nqr subunit, membrane protein Eco28_RS12490 PF10754 Protein of unknown function (DUF2569) Eco28_RS12495 PF05321 Haemolysin expression modulating protein Eco28_RS12510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Eco28_RS12510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Eco28_RS12515 PF00962 Adenosine/AMP deaminase Eco28_RS12520 PF00155 Aminotransferase class I and II Eco28_RS12525 PF02378 Phosphotransferase system, EIIC Eco28_RS12525 PF00367 phosphotransferase system, EIIB Eco28_RS12530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Eco28_RS12530 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS12540 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS12545 PF00703 Glycosyl hydrolases family 2 Eco28_RS12545 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Eco28_RS12545 PF02837 Glycosyl hydrolases family 2, sugar binding domain Eco28_RS12555 PF03573 outer membrane porin, OprD family Eco28_RS12560 PF06097 Bacterial protein of unknown function (DUF945) Eco28_RS12565 PF01238 Phosphomannose isomerase type I Eco28_RS12570 PF05683 Fumarase C-terminus Eco28_RS12570 PF05681 Fumarate hydratase (Fumerase) Eco28_RS12575 PF00206 Lyase Eco28_RS12575 PF10415 Fumarase C C-terminus Eco28_RS12580 PF05472 DNA replication terminus site-binding protein (Ter protein) Eco28_RS12585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS12585 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS12585 PF00672 HAMP domain Eco28_RS12590 PF00072 Response regulator receiver domain Eco28_RS12590 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS12595 PF06942 GlpM protein Eco28_RS12605 PF13520 Amino acid permease Eco28_RS12615 PF07338 Protein of unknown function (DUF1471) Eco28_RS12620 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Eco28_RS12620 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Eco28_RS12620 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Eco28_RS12625 PF02233 NAD(P) transhydrogenase beta subunit Eco28_RS12630 PF01594 AI-2E family transporter Eco28_RS12635 PF00893 Small Multidrug Resistance protein Eco28_RS12640 PF00893 Small Multidrug Resistance protein Eco28_RS12645 PF00089 Trypsin Eco28_RS12665 PF07690 Major Facilitator Superfamily Eco28_RS12670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS12670 PF03466 LysR substrate binding domain Eco28_RS12675 PF00480 ROK family Eco28_RS12685 PF00654 Voltage gated chloride channel Eco28_RS12690 PF02613 Nitrate reductase delta subunit Eco28_RS12695 PF04976 DMSO reductase anchor subunit (DmsC) Eco28_RS12700 PF12800 4Fe-4S binding domain Eco28_RS12700 PF13247 4Fe-4S dicluster domain Eco28_RS12705 PF01568 Molydopterin dinucleotide binding domain Eco28_RS12705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS12705 PF00384 Molybdopterin oxidoreductase Eco28_RS12710 PF00384 Molybdopterin oxidoreductase Eco28_RS12710 PF01568 Molydopterin dinucleotide binding domain Eco28_RS12710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS12715 PF06649 Protein of unknown function (DUF1161) Eco28_RS12720 PF06788 Uncharacterised protein family (UPF0257) Eco28_RS12725 PF13302 Acetyltransferase (GNAT) domain Eco28_RS12730 PF06932 Protein of unknown function (DUF1283) Eco28_RS12735 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Eco28_RS12745 PF13378 Enolase C-terminal domain-like Eco28_RS12745 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Eco28_RS12750 PF00107 Zinc-binding dehydrogenase Eco28_RS12750 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS12760 PF00589 Phage integrase family Eco28_RS12760 PF12167 Arm DNA-binding domain Eco28_RS12775 PF07358 Protein of unknown function (DUF1482) Eco28_RS12780 PF05358 DicB protein Eco28_RS12790 PF07151 Protein of unknown function (DUF1391) Eco28_RS12795 PF01381 Helix-turn-helix Eco28_RS12825 PF14282 FlxA-like protein Eco28_RS12835 PF04221 RelB antitoxin Eco28_RS12840 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Eco28_RS12845 PF01848 Hok/gef family Eco28_RS12860 PF06147 Protein of unknown function (DUF968) Eco28_RS12865 PF03589 Antitermination protein Eco28_RS12870 PF00313 'Cold-shock' DNA-binding domain Eco28_RS12875 PF00313 'Cold-shock' DNA-binding domain Eco28_RS12880 PF04971 Bacteriophage P21 holin S Eco28_RS12885 PF07041 Protein of unknown function (DUF1327) Eco28_RS12890 PF00959 Phage lysozyme Eco28_RS12895 PF10721 Protein of unknown function (DUF2514) Eco28_RS12900 PF00313 'Cold-shock' DNA-binding domain Eco28_RS12915 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system Eco28_RS12920 PF07166 Protein of unknown function (DUF1398) Eco28_RS12925 PF13132 Domain of unknown function (DUF3950) Eco28_RS12930 PF07471 Phage DNA packaging protein Nu1 Eco28_RS12935 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS12940 PF02831 gpW Eco28_RS12950 PF01972 Serine dehydrogenase proteinase Eco28_RS12950 PF01957 NfeD-like C-terminal, partner-binding Eco28_RS12965 PF00589 Phage integrase family Eco28_RS12965 PF13356 Arm DNA-binding domain Eco28_RS12965 PF14659 Phage integrase, N-terminal SAM-like domain Eco28_RS13015 PF03864 Phage major capsid protein E Eco28_RS13080 PF06791 Prophage tail length tape measure protein Eco28_RS13110 PF06316 Enterobacterial Ail/Lom protein Eco28_RS13115 PF08400 Prophage tail fibre N-terminal Eco28_RS13115 PF03335 Phage tail fibre repeat Eco28_RS13115 PF07484 Phage Tail Collar Domain Eco28_RS13120 PF01526 Tn3 transposase DDE domain Eco28_RS13120 PF13700 Domain of unknown function (DUF4158) Eco28_RS13125 PF00239 Resolvase, N terminal domain Eco28_RS13125 PF02796 Helix-turn-helix domain of resolvase Eco28_RS13130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS13130 PF08447 PAS fold Eco28_RS13135 PF08400 Prophage tail fibre N-terminal Eco28_RS13135 PF03335 Phage tail fibre repeat Eco28_RS13135 PF07484 Phage Tail Collar Domain Eco28_RS13140 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS13145 PF02796 Helix-turn-helix domain of resolvase Eco28_RS13145 PF00239 Resolvase, N terminal domain Eco28_RS13160 PF07690 Major Facilitator Superfamily Eco28_RS13160 PF00083 Sugar (and other) transporter Eco28_RS13165 PF08125 Mannitol dehydrogenase C-terminal domain Eco28_RS13165 PF01232 Mannitol dehydrogenase Rossmann domain Eco28_RS13170 PF14001 YdfZ protein Eco28_RS13175 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS13175 PF07729 FCD domain Eco28_RS13180 PF00106 short chain dehydrogenase Eco28_RS13190 PF01432 Peptidase family M3 Eco28_RS13205 PF04076 Bacterial OB fold (BOF) protein Eco28_RS13210 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS13220 PF07690 Major Facilitator Superfamily Eco28_RS13225 PF00892 EamA-like transporter family Eco28_RS13230 PF07702 UTRA domain Eco28_RS13230 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS13235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS13240 PF02378 Phosphotransferase system, EIIC Eco28_RS13245 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit Eco28_RS13250 PF11471 Maltoporin periplasmic N-terminal extension Eco28_RS13250 PF02264 LamB porin Eco28_RS13255 PF00232 Glycosyl hydrolase family 1 Eco28_RS13260 PF13999 MarB protein Eco28_RS13265 PF12833 Helix-turn-helix domain Eco28_RS13270 PF01047 MarR family Eco28_RS13275 PF01914 MarC family integral membrane protein Eco28_RS13280 PF07690 Major Facilitator Superfamily Eco28_RS13295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS13295 PF03466 LysR substrate binding domain Eco28_RS13300 PF00171 Aldehyde dehydrogenase family Eco28_RS13305 PF04960 Glutaminase Eco28_RS13310 PF13811 Domain of unknown function (DUF4186) Eco28_RS13320 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS13330 PF08125 Mannitol dehydrogenase C-terminal domain Eco28_RS13330 PF01232 Mannitol dehydrogenase Rossmann domain Eco28_RS13340 PF01062 Bestrophin, RFP-TM, chloride channel Eco28_RS13345 PF13649 Methyltransferase domain Eco28_RS13350 PF03992 Antibiotic biosynthesis monooxygenase Eco28_RS13355 PF01791 DeoC/LacD family aldolase Eco28_RS13360 PF13407 Periplasmic binding protein domain Eco28_RS13365 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS13370 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS13375 PF00005 ABC transporter Eco28_RS13380 PF04198 Putative sugar-binding domain Eco28_RS13385 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Eco28_RS13385 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Eco28_RS13390 PF13018 Extended Signal Peptide of Type V secretion system Eco28_RS13395 PF01381 Helix-turn-helix Eco28_RS13400 PF07804 HipA-like C-terminal domain Eco28_RS13400 PF13657 HipA N-terminal domain Eco28_RS13410 PF00419 Fimbrial protein Eco28_RS13420 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS13420 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS13425 PF13953 PapC C-terminal domain Eco28_RS13425 PF00577 Outer membrane usher protein Eco28_RS13425 PF13954 PapC N-terminal domain Eco28_RS13430 PF00419 Fimbrial protein Eco28_RS13435 PF00419 Fimbrial protein Eco28_RS13440 PF09160 FimH, mannose binding Eco28_RS13445 PF00384 Molybdopterin oxidoreductase Eco28_RS13450 PF17073 Two-component-system connector protein Eco28_RS13455 PF12833 Helix-turn-helix domain Eco28_RS13460 PF00884 Sulfatase Eco28_RS13465 PF04055 Radical SAM superfamily Eco28_RS13465 PF13186 Iron-sulfur cluster-binding domain Eco28_RS13470 PF00005 ABC transporter Eco28_RS13470 PF06472 ABC transporter transmembrane region 2 Eco28_RS13475 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS13480 PF00675 Insulinase (Peptidase family M16) Eco28_RS13480 PF05193 Peptidase M16 inactive domain Eco28_RS13490 PF00282 Pyridoxal-dependent decarboxylase conserved domain Eco28_RS13495 PF13520 Amino acid permease Eco28_RS13500 PF02638 Glycosyl hydrolase-like 10 Eco28_RS13505 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS13510 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS13510 PF00563 EAL domain Eco28_RS13510 PF13426 PAS domain Eco28_RS13515 PF01427 D-ala-D-ala dipeptidase Eco28_RS13520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS13525 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS13530 PF12911 N-terminal TM domain of oligopeptide transport permease C Eco28_RS13530 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS13535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Eco28_RS13535 PF00005 ABC transporter Eco28_RS13540 PF00005 ABC transporter Eco28_RS13540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Eco28_RS13545 PF02566 OsmC-like protein Eco28_RS13555 PF10684 Putative biofilm-dependent modulation protein Eco28_RS13560 PF08136 30S ribosomal protein subunit S22 family Eco28_RS13565 PF03949 Malic enzyme, NAD binding domain Eco28_RS13565 PF00390 Malic enzyme, N-terminal domain Eco28_RS13570 PF00107 Zinc-binding dehydrogenase Eco28_RS13570 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS13575 PF01381 Helix-turn-helix Eco28_RS13580 PF01292 Prokaryotic cytochrome b561 Eco28_RS13585 PF09163 Formate dehydrogenase N, transmembrane Eco28_RS13585 PF13247 4Fe-4S dicluster domain Eco28_RS13585 PF12800 4Fe-4S binding domain Eco28_RS13595 PF00892 EamA-like transporter family Eco28_RS13600 PF00267 Gram-negative porin Eco28_RS13620 PF07690 Major Facilitator Superfamily Eco28_RS13625 PF00384 Molybdopterin oxidoreductase Eco28_RS13625 PF14710 Respiratory nitrate reductase alpha N-terminal Eco28_RS13625 PF01568 Molydopterin dinucleotide binding domain Eco28_RS13630 PF14711 Respiratory nitrate reductase beta C-terminal Eco28_RS13630 PF13247 4Fe-4S dicluster domain Eco28_RS13635 PF02613 Nitrate reductase delta subunit Eco28_RS13640 PF02665 Nitrate reductase gamma subunit Eco28_RS13645 PF02567 Phenazine biosynthesis-like protein Eco28_RS13650 PF00797 N-acetyltransferase Eco28_RS13655 PF01613 Flavin reductase like domain Eco28_RS13660 PF01361 Tautomerase enzyme Eco28_RS13665 PF01609 Transposase DDE domain Eco28_RS13665 PF13808 DDE_Tnp_1-associated Eco28_RS13685 PF05593 RHS Repeat Eco28_RS13685 PF03527 RHS protein Eco28_RS13685 PF14220 Domain of unknown function (DUF4329) Eco28_RS13690 PF04717 Type VI secretion system, phage-baseplate injector Eco28_RS13695 PF17520 Family of unknown function (DUF5445) Eco28_RS13705 PF00324 Amino acid permease Eco28_RS13725 PF00593 TonB dependent receptor Eco28_RS13725 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS13740 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS13740 PF07729 FCD domain Eco28_RS13745 PF16884 N-terminal domain of oxidoreductase Eco28_RS13745 PF00107 Zinc-binding dehydrogenase Eco28_RS13755 PF00583 Acetyltransferase (GNAT) family Eco28_RS13760 PF04657 Putative inner membrane exporter, YdcZ Eco28_RS13765 PF10735 Protein of unknown function (DUF2526) Eco28_RS13770 PF10753 Toxin GhoT_OrtT Eco28_RS13785 PF00171 Aldehyde dehydrogenase family Eco28_RS13790 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS13795 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS13800 PF08402 TOBE domain Eco28_RS13800 PF00005 ABC transporter Eco28_RS13805 PF13416 Bacterial extracellular solute-binding protein Eco28_RS13810 PF00155 Aminotransferase class I and II Eco28_RS13810 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS13815 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system Eco28_RS13815 PF01381 Helix-turn-helix Eco28_RS13820 PF07927 HicA toxin of bacterial toxin-antitoxin, Eco28_RS13825 PF10829 Protein of unknown function (DUF2554) Eco28_RS13830 PF12392 Collagenase Eco28_RS13830 PF01136 Peptidase family U32 Eco28_RS13835 PF01381 Helix-turn-helix Eco28_RS13835 PF07883 Cupin domain Eco28_RS13840 PF03594 Benzoate membrane transport protein Eco28_RS13845 PF07282 Putative transposase DNA-binding domain Eco28_RS13845 PF01385 Probable transposase Eco28_RS13845 PF12323 Helix-turn-helix domain Eco28_RS13855 PF11769 Protein of unknown function (DUF3313) Eco28_RS13860 PF03848 Tellurite resistance protein TehB Eco28_RS13865 PF03595 Voltage-dependent anion channel Eco28_RS13870 PF18836 Beta solenoid repeat from YDCK Eco28_RS13875 PF13302 Acetyltransferase (GNAT) domain Eco28_RS13880 PF04325 Protein of unknown function (DUF465) Eco28_RS13890 PF04349 Periplasmic glucan biosynthesis protein, MdoG Eco28_RS13900 PF07063 Domain of unknown function (DUF1338) Eco28_RS13905 PF03466 LysR substrate binding domain Eco28_RS13905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS13910 PF00672 HAMP domain Eco28_RS13910 PF02203 Tar ligand binding domain homologue Eco28_RS13910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS13915 PF01848 Hok/gef family Eco28_RS13925 PF01292 Prokaryotic cytochrome b561 Eco28_RS13930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Eco28_RS13930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Eco28_RS13935 PF00171 Aldehyde dehydrogenase family Eco28_RS13940 PF02698 DUF218 domain Eco28_RS13965 PF11898 Domain of unknown function (DUF3418) Eco28_RS13965 PF00270 DEAD/DEAH box helicase Eco28_RS13965 PF04408 Helicase associated domain (HA2) Eco28_RS13965 PF00271 Helicase conserved C-terminal domain Eco28_RS13965 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold Eco28_RS13970 PF02525 Flavodoxin-like fold Eco28_RS13975 PF00782 Dual specificity phosphatase, catalytic domain Eco28_RS13980 PF12146 Serine aminopeptidase, S33 Eco28_RS13980 PF12147 Putative methyltransferase Eco28_RS13990 PF01066 CDP-alcohol phosphatidyltransferase Eco28_RS13995 PF10971 Protein of unknown function (DUF2773) Eco28_RS14000 PF00248 Aldo/keto reductase family Eco28_RS14015 PF07027 Protein of unknown function (DUF1318) Eco28_RS14020 PF13617 YnbE-like lipoprotein Eco28_RS14025 PF11739 Dicarboxylate transport Eco28_RS14030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Eco28_RS14030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Eco28_RS14035 PF03724 META domain Eco28_RS14040 PF03891 Domain of unknown function (DUF333) Eco28_RS14045 PF10371 Domain of unknown function Eco28_RS14045 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Eco28_RS14045 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Eco28_RS14045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Eco28_RS14045 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Eco28_RS14055 PF00267 Gram-negative porin Eco28_RS14060 PF00582 Universal stress protein family Eco28_RS14070 PF00239 Resolvase, N terminal domain Eco28_RS14070 PF02796 Helix-turn-helix domain of resolvase Eco28_RS14075 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS14080 PF08400 Prophage tail fibre N-terminal Eco28_RS14080 PF03335 Phage tail fibre repeat Eco28_RS14080 PF07484 Phage Tail Collar Domain Eco28_RS14085 PF06316 Enterobacterial Ail/Lom protein Eco28_RS14095 PF01797 Transposase IS200 like Eco28_RS14130 PF06791 Prophage tail length tape measure protein Eco28_RS14210 PF02195 ParB-like nuclease domain Eco28_RS14220 PF02386 Cation transport protein Eco28_RS14225 PF06085 Lipoprotein Rz1 precursor Eco28_RS14230 PF00959 Phage lysozyme Eco28_RS14235 PF04971 Bacteriophage P21 holin S Eco28_RS14250 PF06519 TolA C-terminal Eco28_RS14265 PF07102 Protein of unknown function (DUF1364) Eco28_RS14285 PF07690 Major Facilitator Superfamily Eco28_RS14290 PF04752 ChaC-like protein Eco28_RS14295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS14295 PF03466 LysR substrate binding domain Eco28_RS14300 PF10011 Predicted membrane protein (DUF2254) Eco28_RS14310 PF02028 BCCT, betaine/carnitine/choline family transporter Eco28_RS14320 PF17948 DnaT DNA-binding domain Eco28_RS14345 PF07151 Protein of unknown function (DUF1391) Eco28_RS14350 PF14163 Super-infection exclusion protein B Eco28_RS14365 PF04181 Rtr1/RPAP2 family Eco28_RS14375 PF12684 PDDEXK-like domain of unknown function (DUF3799) Eco28_RS14375 PF06630 Enterobacterial exodeoxyribonuclease VIII Eco28_RS14380 PF03837 RecT family Eco28_RS14390 PF06688 Protein of unknown function (DUF1187) Eco28_RS14395 PF06806 Putative excisionase (DUF1233) Eco28_RS14400 PF00589 Phage integrase family Eco28_RS14400 PF12167 Arm DNA-binding domain Eco28_RS14405 PF01171 PP-loop family Eco28_RS14410 PF00270 DEAD/DEAH box helicase Eco28_RS14410 PF00271 Helicase conserved C-terminal domain Eco28_RS14410 PF03880 DbpA RNA binding domain Eco28_RS14420 PF01544 CorA-like Mg2+ transporter protein Eco28_RS14425 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS14425 PF08448 PAS fold Eco28_RS14430 PF01713 Smr domain Eco28_RS14440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS14440 PF03466 LysR substrate binding domain Eco28_RS14445 PF07687 Peptidase dimerisation domain Eco28_RS14445 PF01546 Peptidase family M20/M25/M40 Eco28_RS14450 PF01546 Peptidase family M20/M25/M40 Eco28_RS14460 PF03806 AbgT putative transporter family Eco28_RS14465 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Eco28_RS14465 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Eco28_RS14470 PF00325 Bacterial regulatory proteins, crp family Eco28_RS14470 PF00027 Cyclic nucleotide-binding domain Eco28_RS14475 PF00582 Universal stress protein family Eco28_RS14480 PF10749 Protein of unknown function (DUF2534) Eco28_RS14485 PF00924 Mechanosensitive ion channel Eco28_RS14490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS14495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS14495 PF03466 LysR substrate binding domain Eco28_RS14500 PF12146 Serine aminopeptidase, S33 Eco28_RS14505 PF12146 Serine aminopeptidase, S33 Eco28_RS14515 PF00246 Zinc carboxypeptidase Eco28_RS14520 PF13378 Enolase C-terminal domain-like Eco28_RS14520 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Eco28_RS14525 PF08534 Redoxin Eco28_RS14530 PF18024 Helix-turn-helix domain Eco28_RS14530 PF00158 Sigma-54 interaction domain Eco28_RS14530 PF13188 PAS domain Eco28_RS14535 PF05128 Domain of unknown function (DUF697) Eco28_RS14540 PF04317 YcjX-like family, DUF463 Eco28_RS14545 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS14545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Eco28_RS14550 PF09381 Outer membrane protein G (OmpG) Eco28_RS14555 PF00005 ABC transporter Eco28_RS14555 PF03459 TOBE domain Eco28_RS14555 PF17912 MalK OB fold domain Eco28_RS14560 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS14565 PF03636 Glycosyl hydrolase family 65, N-terminal domain Eco28_RS14565 PF03632 Glycosyl hydrolase family 65 central catalytic domain Eco28_RS14565 PF03633 Glycosyl hydrolase family 65, C-terminal domain Eco28_RS14570 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Eco28_RS14570 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Eco28_RS14575 PF01261 Xylose isomerase-like TIM barrel Eco28_RS14580 PF00107 Zinc-binding dehydrogenase Eco28_RS14585 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS14590 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS14595 PF01547 Bacterial extracellular solute-binding protein Eco28_RS14600 PF00128 Alpha amylase, catalytic domain Eco28_RS14605 PF00581 Rhodanese-like domain Eco28_RS14610 PF09584 Phage shock protein PspD (Phageshock_PspD) Eco28_RS14615 PF04024 PspC domain Eco28_RS14620 PF06667 Phage shock protein B Eco28_RS14625 PF04012 PspA/IM30 family Eco28_RS14630 PF02954 Bacterial regulatory protein, Fis family Eco28_RS14630 PF00158 Sigma-54 interaction domain Eco28_RS14635 PF00202 Aminotransferase class-III Eco28_RS14640 PF01266 FAD dependent oxidoreductase Eco28_RS14645 PF00171 Aldehyde dehydrogenase family Eco28_RS14650 PF01381 Helix-turn-helix Eco28_RS14650 PF07883 Cupin domain Eco28_RS14655 PF07722 Peptidase C26 Eco28_RS14660 PF00120 Glutamine synthetase, catalytic domain Eco28_RS14665 PF00324 Amino acid permease Eco28_RS14670 PF10820 Protein of unknown function (DUF2543) Eco28_RS14680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS14685 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS14690 PF12911 N-terminal TM domain of oligopeptide transport permease C Eco28_RS14690 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS14695 PF00005 ABC transporter Eco28_RS14695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Eco28_RS14700 PF00005 ABC transporter Eco28_RS14705 PF07690 Major Facilitator Superfamily Eco28_RS14710 PF02321 Outer membrane efflux protein Eco28_RS14720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS14720 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS14725 PF16295 Tetracyclin repressor-like, C-terminal domain Eco28_RS14725 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS14740 PF17876 Cold shock domain Eco28_RS14740 PF00575 S1 RNA binding domain Eco28_RS14740 PF08206 Ribonuclease B OB domain Eco28_RS14740 PF00773 RNB domain Eco28_RS14750 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS14750 PF00563 EAL domain Eco28_RS14750 PF13426 PAS domain Eco28_RS14760 PF00455 DeoR C terminal sensor domain Eco28_RS14760 PF08220 DeoR-like helix-turn-helix domain Eco28_RS14765 PF05433 Glycine zipper 2TM domain Eco28_RS14770 PF01253 Translation initiation factor SUI1 Eco28_RS14775 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Eco28_RS14780 PF18073 Rubredoxin metal binding domain Eco28_RS14785 PF06305 Lipopolysaccharide assembly protein A domain Eco28_RS14790 PF01569 PAP2 superfamily Eco28_RS14795 PF00925 GTP cyclohydrolase II Eco28_RS14800 PF00330 Aconitase family (aconitate hydratase) Eco28_RS14800 PF00694 Aconitase C-terminal domain Eco28_RS14820 PF03466 LysR substrate binding domain Eco28_RS14820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS14830 PF01797 Transposase IS200 like Eco28_RS14840 PF01396 Topoisomerase DNA binding C4 zinc finger Eco28_RS14840 PF01131 DNA topoisomerase Eco28_RS14840 PF08272 Topoisomerase I zinc-ribbon-like Eco28_RS14840 PF01751 Toprim domain Eco28_RS14850 PF10692 Protein of unknown function (DUF2498) Eco28_RS14855 PF08496 Peptidase family S49 N-terminal Eco28_RS14855 PF01343 Peptidase family S49 Eco28_RS14860 PF00106 short chain dehydrogenase Eco28_RS14865 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Eco28_RS14865 PF12557 Cob(I)alamin adenosyltransferase N terminal Eco28_RS14870 PF01479 S4 domain Eco28_RS14870 PF00849 RNA pseudouridylate synthase Eco28_RS14875 PF09972 Predicted membrane protein (DUF2207) Eco28_RS14880 PF01300 Telomere recombination Eco28_RS14885 PF02811 PHP domain Eco28_RS14890 PF04715 Anthranilate synthase component I, N terminal region Eco28_RS14890 PF00425 chorismate binding enzyme Eco28_RS14895 PF00117 Glutamine amidotransferase class-I Eco28_RS14895 PF00591 Glycosyl transferase family, a/b domain Eco28_RS14895 PF02885 Glycosyl transferase family, helical bundle domain Eco28_RS14900 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Eco28_RS14900 PF00218 Indole-3-glycerol phosphate synthase Eco28_RS14905 PF00291 Pyridoxal-phosphate dependent enzyme Eco28_RS14910 PF00290 Tryptophan synthase alpha chain Eco28_RS14915 PF10685 Stress-induced bacterial acidophilic repeat motif Eco28_RS14920 PF05974 Domain of unknown function (DUF892) Eco28_RS14925 PF05974 Domain of unknown function (DUF892) Eco28_RS14930 PF03922 OmpW family Eco28_RS14940 PF04279 Intracellular septation protein A Eco28_RS14945 PF03061 Thioesterase superfamily Eco28_RS14950 PF03544 Gram-negative bacterial TonB protein C-terminal Eco28_RS14955 PF03795 YCII-related domain Eco28_RS14960 PF07885 Ion channel Eco28_RS14960 PF02254 TrkA-N domain Eco28_RS14970 PF13091 PLD-like domain Eco28_RS14970 PF13396 Phospholipase_D-nuclease N-terminal Eco28_RS14975 PF04269 Protein of unknown function, DUF440 Eco28_RS14980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Eco28_RS14980 PF00005 ABC transporter Eco28_RS14985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Eco28_RS14985 PF00005 ABC transporter Eco28_RS14990 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS14990 PF12911 N-terminal TM domain of oligopeptide transport permease C Eco28_RS14995 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS15000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS15010 PF01914 MarC family integral membrane protein Eco28_RS15015 PF00465 Iron-containing alcohol dehydrogenase Eco28_RS15015 PF00171 Aldehyde dehydrogenase family Eco28_RS15020 PF00265 Thymidine kinase Eco28_RS15025 PF00816 H-NS histone family Eco28_RS15030 PF00483 Nucleotidyl transferase Eco28_RS15035 PF00072 Response regulator receiver domain Eco28_RS15040 PF01734 Patatin-like phospholipase Eco28_RS15045 PF02810 SEC-C motif Eco28_RS15050 PF00551 Formyl transferase Eco28_RS15050 PF01842 ACT domain Eco28_RS15075 PF02665 Nitrate reductase gamma subunit Eco28_RS15080 PF02613 Nitrate reductase delta subunit Eco28_RS15085 PF13247 4Fe-4S dicluster domain Eco28_RS15085 PF14711 Respiratory nitrate reductase beta C-terminal Eco28_RS15090 PF14710 Respiratory nitrate reductase alpha N-terminal Eco28_RS15090 PF01568 Molydopterin dinucleotide binding domain Eco28_RS15090 PF00384 Molybdopterin oxidoreductase Eco28_RS15095 PF07690 Major Facilitator Superfamily Eco28_RS15105 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term Eco28_RS15105 PF00672 HAMP domain Eco28_RS15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS15105 PF07730 Histidine kinase Eco28_RS15110 PF00072 Response regulator receiver domain Eco28_RS15110 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS15115 PF11924 Inverse autotransporter, beta-domain Eco28_RS15120 PF02635 DsrE/DsrF-like family Eco28_RS15125 PF04752 ChaC-like protein Eco28_RS15130 PF06150 ChaB Eco28_RS15135 PF01699 Sodium/calcium exchanger protein Eco28_RS15145 PF13940 Toxin Ldr, type I toxin-antitoxin system Eco28_RS15155 PF13940 Toxin Ldr, type I toxin-antitoxin system Eco28_RS15160 PF00793 DAHP synthetase I family Eco28_RS15165 PF13369 Transglutaminase-like superfamily Eco28_RS15170 PF04247 Invasion gene expression up-regulator, SirB Eco28_RS15175 PF17827 PrmC N-terminal domain Eco28_RS15175 PF13847 Methyltransferase domain Eco28_RS15180 PF03462 PCRF domain Eco28_RS15180 PF00472 RF-1 domain Eco28_RS15185 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Eco28_RS15185 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Eco28_RS15185 PF01488 Shikimate / quinate 5-dehydrogenase Eco28_RS15190 PF03550 Outer membrane lipoprotein LolB Eco28_RS15195 PF00288 GHMP kinases N terminal domain Eco28_RS15195 PF08544 GHMP kinases C terminal Eco28_RS15200 PF14572 Phosphoribosyl synthetase-associated domain Eco28_RS15200 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Eco28_RS15205 PF00916 Sulfate permease family Eco28_RS15205 PF01740 STAS domain Eco28_RS15210 PF10762 Protein of unknown function (DUF2583) Eco28_RS15215 PF01195 Peptidyl-tRNA hydrolase Eco28_RS15220 PF01926 50S ribosome-binding GTPase Eco28_RS15220 PF06071 Protein of unknown function (DUF933) Eco28_RS15235 PF03797 Autotransporter beta-domain Eco28_RS15235 PF03212 Pertactin Eco28_RS15240 PF02954 Bacterial regulatory protein, Fis family Eco28_RS15240 PF00989 PAS fold Eco28_RS15240 PF00158 Sigma-54 interaction domain Eco28_RS15245 PF02733 Dak1 domain Eco28_RS15250 PF02734 DAK2 domain Eco28_RS15255 PF03610 PTS system fructose IIA component Eco28_RS15255 PF00391 PEP-utilising enzyme, mobile domain Eco28_RS15255 PF00381 PTS HPr component phosphorylation site Eco28_RS15255 PF05524 PEP-utilising enzyme, N-terminal Eco28_RS15265 PF01204 Trehalase Eco28_RS15275 PF01497 Periplasmic binding protein Eco28_RS15280 PF01032 FecCD transport family Eco28_RS15285 PF00005 ABC transporter Eco28_RS15290 PF13649 Methyltransferase domain Eco28_RS15295 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Eco28_RS15295 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Eco28_RS15305 PF04226 Transglycosylase associated protein Eco28_RS15310 PF07238 PilZ domain Eco28_RS15310 PF07317 Flagellar regulator YcgR Eco28_RS15315 PF01464 Transglycosylase SLT domain Eco28_RS15325 PF17676 LD-carboxypeptidase C-terminal domain Eco28_RS15325 PF02016 LD-carboxypeptidase N-terminal domain Eco28_RS15330 PF02080 TrkA-C domain Eco28_RS15330 PF00999 Sodium/hydrogen exchanger family Eco28_RS15330 PF03471 Transporter associated domain Eco28_RS15340 PF00842 Alanine racemase, C-terminal domain Eco28_RS15340 PF01168 Alanine racemase, N-terminal domain Eco28_RS15345 PF01266 FAD dependent oxidoreductase Eco28_RS15350 PF04293 SpoVR like protein Eco28_RS15355 PF07840 FadR C-terminal domain Eco28_RS15355 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS15360 PF06450 Bacterial Na+/H+ antiporter B (NhaB) Eco28_RS15365 PF02600 Disulfide bond formation protein DsbB Eco28_RS15370 PF00817 impB/mucB/samB family Eco28_RS15370 PF11798 IMS family HHH motif Eco28_RS15370 PF13438 Domain of unknown function (DUF4113) Eco28_RS15370 PF11799 impB/mucB/samB family C-terminal domain Eco28_RS15375 PF00717 Peptidase S24-like Eco28_RS15380 PF06109 Haemolysin E (HlyE) Eco28_RS15385 PF03692 Putative zinc- or iron-chelating domain Eco28_RS15390 PF01557 Fumarylacetoacetate (FAA) hydrolase family Eco28_RS15395 PF05166 YcgL domain Eco28_RS15405 PF04151 Bacterial pre-peptidase C-terminal domain Eco28_RS15410 PF05666 Fels-1 Prophage Protein-like Eco28_RS15420 PF05209 Septum formation inhibitor MinC, N-terminal domain Eco28_RS15420 PF03775 Septum formation inhibitor MinC, C-terminal domain Eco28_RS15425 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Eco28_RS15430 PF03776 Septum formation topological specificity factor MinE Eco28_RS15435 PF03797 Autotransporter beta-domain Eco28_RS15450 PF13436 Glycine-zipper domain Eco28_RS15455 PF16456 YmgD protein Eco28_RS15460 PF03797 Autotransporter beta-domain Eco28_RS15475 PF00563 EAL domain Eco28_RS15475 PF12792 CSS motif domain associated with EAL Eco28_RS15485 PF10798 Biofilm development protein YmgB/AriR Eco28_RS15495 PF10798 Biofilm development protein YmgB/AriR Eco28_RS15500 PF00563 EAL domain Eco28_RS15500 PF04940 Sensors of blue-light using FAD Eco28_RS15505 PF13411 MerR HTH family regulatory protein Eco28_RS15510 PF07166 Protein of unknown function (DUF1398) Eco28_RS15515 PF01797 Transposase IS200 like Eco28_RS15535 PF00180 Isocitrate/isopropylmalate dehydrogenase Eco28_RS15540 PF00849 RNA pseudouridylate synthase Eco28_RS15545 PF00293 NUDIX domain Eco28_RS15555 PF04356 Protein of unknown function (DUF489) Eco28_RS15560 PF00206 Lyase Eco28_RS15560 PF08328 Adenylosuccinate lyase C-terminal Eco28_RS15565 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS15565 PF00072 Response regulator receiver domain Eco28_RS15570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS15570 PF08918 PhoQ Sensor Eco28_RS15575 PF08007 Cupin superfamily protein Eco28_RS15580 PF01546 Peptidase family M20/M25/M40 Eco28_RS15580 PF07687 Peptidase dimerisation domain Eco28_RS15590 PF00005 ABC transporter Eco28_RS15590 PF08402 TOBE domain Eco28_RS15595 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS15600 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS15605 PF13416 Bacterial extracellular solute-binding protein Eco28_RS15610 PF02146 Sir2 family Eco28_RS15615 PF00480 ROK family Eco28_RS15620 PF02687 FtsX-like permease family Eco28_RS15620 PF12704 MacB-like periplasmic core domain Eco28_RS15625 PF00005 ABC transporter Eco28_RS15630 PF02687 FtsX-like permease family Eco28_RS15630 PF12704 MacB-like periplasmic core domain Eco28_RS15635 PF01757 Acyltransferase family Eco28_RS15640 PF02559 CarD-like/TRCF domain Eco28_RS15640 PF00271 Helicase conserved C-terminal domain Eco28_RS15640 PF00270 DEAD/DEAH box helicase Eco28_RS15640 PF17757 UvrB interaction domain Eco28_RS15640 PF03461 TRCF domain Eco28_RS15645 PF01476 LysM domain Eco28_RS15645 PF17969 L,D-transpeptidase C-terminal domain Eco28_RS15645 PF03734 L,D-transpeptidase catalytic domain Eco28_RS15650 PF07338 Protein of unknown function (DUF1471) Eco28_RS15655 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS15660 PF05433 Glycine zipper 2TM domain Eco28_RS15670 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS15675 PF05728 Uncharacterised protein family (UPF0227) Eco28_RS15680 PF00933 Glycosyl hydrolase family 3 N terminal domain Eco28_RS15685 PF01636 Phosphotransferase enzyme family Eco28_RS15690 PF13036 Peptidoglycan-synthase activator LpoB Eco28_RS15695 PF07233 Protein of unknown function (DUF1425) Eco28_RS15700 PF01230 HIT domain Eco28_RS15705 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS15705 PF00593 TonB dependent receptor Eco28_RS15710 PF04606 Ogr/Delta-like zinc finger Eco28_RS15745 PF04984 Phage tail sheath protein subtilisin-like domain Eco28_RS15745 PF17482 Phage tail sheath C-terminal domain Eco28_RS15750 PF02796 Helix-turn-helix domain of resolvase Eco28_RS15750 PF00239 Resolvase, N terminal domain Eco28_RS15755 PF07484 Phage Tail Collar Domain Eco28_RS15760 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS15880 PF06183 DinI-like family Eco28_RS15890 PF05840 Bacteriophage replication gene A protein (GPA) Eco28_RS15895 PF02086 D12 class N6 adenine-specific DNA methyltransferase Eco28_RS15900 PF01258 Prokaryotic dksA/traR C4-type zinc finger Eco28_RS15910 PF17282 Family of unknown function (DUF5347) Eco28_RS15920 PF06892 Phage regulatory protein CII (CP76) Eco28_RS15930 PF16452 Bacteriophage CI repressor C-terminal domain Eco28_RS15930 PF07022 Bacteriophage CI repressor helix-turn-helix domain Eco28_RS15940 PF00589 Phage integrase family Eco28_RS15940 PF02899 Phage integrase, N-terminal SAM-like domain Eco28_RS15950 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS15950 PF00593 TonB dependent receptor Eco28_RS15955 PF00367 phosphotransferase system, EIIB Eco28_RS15955 PF02378 Phosphotransferase system, EIIC Eco28_RS15960 PF01026 TatD related DNase Eco28_RS15965 PF09115 DNA polymerase III, delta subunit, C terminal Eco28_RS15970 PF02223 Thymidylate kinase Eco28_RS15975 PF02618 YceG-like family Eco28_RS15980 PF01063 Amino-transferase class IV Eco28_RS15985 PF02801 Beta-ketoacyl synthase, C-terminal domain Eco28_RS15985 PF00109 Beta-ketoacyl synthase, N-terminal domain Eco28_RS15990 PF00550 Phosphopantetheine attachment site Eco28_RS16000 PF00698 Acyl transferase domain Eco28_RS16005 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Eco28_RS16005 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Eco28_RS16010 PF02504 Fatty acid synthesis protein Eco28_RS16015 PF01783 Ribosomal L32p protein family Eco28_RS16020 PF02620 Large ribosomal RNA subunit accumulation protein YceD Eco28_RS16025 PF02545 Maf-like protein Eco28_RS16030 PF00849 RNA pseudouridylate synthase Eco28_RS16030 PF01479 S4 domain Eco28_RS16040 PF00575 S1 RNA binding domain Eco28_RS16040 PF10150 Ribonuclease E/G family Eco28_RS16040 PF12111 Polyribonucleotide phosphorylase C terminal Eco28_RS16045 PF00669 Bacterial flagellin N-terminal helical region Eco28_RS16050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Eco28_RS16050 PF00460 Flagella basal body rod protein Eco28_RS16055 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase Eco28_RS16055 PF10135 Rod binding protein Eco28_RS16060 PF02119 Flagellar P-ring protein Eco28_RS16065 PF02107 Flagellar L-ring protein Eco28_RS16070 PF00460 Flagella basal body rod protein Eco28_RS16070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Eco28_RS16075 PF00460 Flagella basal body rod protein Eco28_RS16075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Eco28_RS16080 PF00460 Flagella basal body rod protein Eco28_RS16080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Eco28_RS16080 PF07559 Flagellar basal body protein FlaE Eco28_RS16085 PF13861 FlgD Tudor-like domain Eco28_RS16085 PF13860 FlgD Ig-like domain Eco28_RS16085 PF03963 Flagellar hook capping protein - N-terminal region Eco28_RS16090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Eco28_RS16090 PF00460 Flagella basal body rod protein Eco28_RS16095 PF00460 Flagella basal body rod protein Eco28_RS16100 PF13144 Chaperone for flagella basal body P-ring formation Eco28_RS16105 PF04316 Anti-sigma-28 factor, FlgM Eco28_RS16110 PF05130 FlgN protein Eco28_RS16115 PF03023 Lipid II flippase MurJ Eco28_RS16120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Eco28_RS16125 PF04337 Protein of unknown function, DUF480 Eco28_RS16130 PF13302 Acetyltransferase (GNAT) domain Eco28_RS16135 PF07690 Major Facilitator Superfamily Eco28_RS16140 PF04399 Glutaredoxin 2, C terminal domain Eco28_RS16140 PF13417 Glutathione S-transferase, N-terminal domain Eco28_RS16145 PF07273 Protein of unknown function (DUF1439) Eco28_RS16150 PF01979 Amidohydrolase family Eco28_RS16155 PF06183 DinI-like family Eco28_RS16160 PF13991 BssS protein family Eco28_RS16165 PF01266 FAD dependent oxidoreductase Eco28_RS16170 PF10968 Protein of unknown function (DUF2770) Eco28_RS16175 PF01292 Prokaryotic cytochrome b561 Eco28_RS16180 PF04264 YceI-like domain Eco28_RS16185 PF00581 Rhodanese-like domain Eco28_RS16185 PF12368 Rhodanase C-terminal Eco28_RS16185 PF17773 UPF0176 acylphosphatase like domain Eco28_RS16190 PF03279 Bacterial lipid A biosynthesis acyltransferase Eco28_RS16195 PF07690 Major Facilitator Superfamily Eco28_RS16200 PF13984 MsyB protein Eco28_RS16205 PF07119 Protein of unknown function (DUF1375) Eco28_RS16210 PF00535 Glycosyl transferase family 2 Eco28_RS16215 PF04349 Periplasmic glucan biosynthesis protein, MdoG Eco28_RS16230 PF01757 Acyltransferase family Eco28_RS16235 PF13091 PLD-like domain Eco28_RS16240 PF01661 Macro domain Eco28_RS16250 PF10610 Thin aggregative fimbriae synthesis protein Eco28_RS16255 PF07012 Curlin associated repeat Eco28_RS16260 PF07012 Curlin associated repeat Eco28_RS16275 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS16280 PF10627 Curli assembly protein CsgE Eco28_RS16285 PF10614 Type VIII secretion system (T8SS), CsgF protein Eco28_RS16290 PF03783 Curli production assembly/transport component CsgG Eco28_RS16295 PF06496 Protein of unknown function (DUF1097) Eco28_RS16300 PF02613 Nitrate reductase delta subunit Eco28_RS16305 PF02811 PHP domain Eco28_RS16310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Eco28_RS16335 PF06755 CbtA_toxin of type IV toxin-antitoxin system Eco28_RS16340 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A Eco28_RS16350 PF06174 Protein of unknown function (DUF987) Eco28_RS16355 PF04002 RadC-like JAB domain Eco28_RS16360 PF03230 Antirestriction protein Eco28_RS16365 PF06067 Domain of unknown function (DUF932) Eco28_RS16385 PF13990 YjcZ-like protein Eco28_RS16390 PF00350 Dynamin family Eco28_RS16395 PF03797 Autotransporter beta-domain Eco28_RS16395 PF16168 Adhesin of bacterial autotransporter system, probable stalk Eco28_RS16395 PF13018 Extended Signal Peptide of Type V secretion system Eco28_RS16440 PF01320 Colicin immunity protein / pyocin immunity protein Eco28_RS16455 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) Eco28_RS16455 PF04717 Type VI secretion system, phage-baseplate injector Eco28_RS16455 PF13296 Putative type VI secretion system Rhs element Vgr Eco28_RS16510 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) Eco28_RS16510 PF04717 Type VI secretion system, phage-baseplate injector Eco28_RS16510 PF13296 Putative type VI secretion system Rhs element Vgr Eco28_RS16515 PF10431 C-terminal, D2-small domain, of ClpB protein Eco28_RS16515 PF17871 AAA lid domain Eco28_RS16515 PF07724 AAA domain (Cdc48 subfamily) Eco28_RS16515 PF00004 ATPase family associated with various cellular activities (AAA) Eco28_RS16525 PF00691 OmpA family Eco28_RS16525 PF05736 OprF membrane domain Eco28_RS16535 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE Eco28_RS16540 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath Eco28_RS16600 PF13148 Protein of unknown function (DUF3987) Eco28_RS16630 PF13356 Arm DNA-binding domain Eco28_RS16630 PF00589 Phage integrase family Eco28_RS16670 PF00005 ABC transporter Eco28_RS16685 PF00109 Beta-ketoacyl synthase, N-terminal domain Eco28_RS16685 PF02801 Beta-ketoacyl synthase, C-terminal domain Eco28_RS16690 PF01571 Aminomethyltransferase folate-binding domain Eco28_RS16690 PF08669 Glycine cleavage T-protein C-terminal barrel domain Eco28_RS16700 PF07977 FabA-like domain Eco28_RS16705 PF00106 short chain dehydrogenase Eco28_RS16710 PF01648 4'-phosphopantetheinyl transferase superfamily Eco28_RS16715 PF08479 POTRA domain, ShlB-type Eco28_RS16715 PF17287 POTRA domain Eco28_RS16715 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB Eco28_RS16720 PF13332 Hemagglutinin repeat Eco28_RS16720 PF05860 haemagglutination activity domain Eco28_RS16720 PF13018 Extended Signal Peptide of Type V secretion system Eco28_RS16720 PF04829 Pre-toxin domain with VENN motif Eco28_RS16730 PF16970 Type-1 fimbrial protein, A Eco28_RS16735 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS16735 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS16740 PF13953 PapC C-terminal domain Eco28_RS16740 PF13954 PapC N-terminal domain Eco28_RS16740 PF00577 Outer membrane usher protein Eco28_RS16750 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS16750 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS16770 PF12792 CSS motif domain associated with EAL Eco28_RS16770 PF00563 EAL domain Eco28_RS16775 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS16775 PF17158 Membrane-associated sensor, integral membrane domain Eco28_RS16790 PF01522 Polysaccharide deacetylase Eco28_RS16790 PF14883 Hypothetical glycosyl hydrolase family 13 Eco28_RS16795 PF00535 Glycosyl transferase family 2 Eco28_RS16800 PF13994 PgaD-like protein Eco28_RS16805 PF02562 PhoH-like protein Eco28_RS16810 PF04261 Dyp-type peroxidase family Eco28_RS16815 PF13473 Cupredoxin-like domain Eco28_RS16815 PF09375 Imelysin Eco28_RS16820 PF03239 Iron permease FTR1 family Eco28_RS16835 PF00474 Sodium:solute symporter family Eco28_RS16850 PF01619 Proline dehydrogenase Eco28_RS16850 PF00171 Aldehyde dehydrogenase family Eco28_RS16850 PF14850 DNA-binding domain of Proline dehydrogenase Eco28_RS16850 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Eco28_RS16855 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS16855 PF08362 YcdC-like protein, C-terminal region Eco28_RS16860 PF00296 Luciferase-like monooxygenase Eco28_RS16865 PF00857 Isochorismatase family Eco28_RS16870 PF01042 Endoribonuclease L-PSP Eco28_RS16875 PF00561 alpha/beta hydrolase fold Eco28_RS16880 PF00881 Nitroreductase family Eco28_RS16885 PF01613 Flavin reductase like domain Eco28_RS16890 PF00860 Permease family Eco28_RS16895 PF10685 Stress-induced bacterial acidophilic repeat motif Eco28_RS16905 PF03358 NADPH-dependent FMN reductase Eco28_RS16910 PF13993 YccJ-like protein Eco28_RS16915 PF00328 Histidine phosphatase superfamily (branch 2) Eco28_RS16925 PF01556 DnaJ C terminal domain Eco28_RS16925 PF00226 DnaJ domain Eco28_RS16935 PF02613 Nitrate reductase delta subunit Eco28_RS16940 PF18364 Molybdopterin oxidoreductase N-terminal domain Eco28_RS16940 PF01568 Molydopterin dinucleotide binding domain Eco28_RS16940 PF00384 Molybdopterin oxidoreductase Eco28_RS16945 PF03264 NapC/NirT cytochrome c family, N-terminal region Eco28_RS16950 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS16950 PF00072 Response regulator receiver domain Eco28_RS16955 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Eco28_RS16960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS16960 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS16960 PF00672 HAMP domain Eco28_RS16960 PF00072 Response regulator receiver domain Eco28_RS16960 PF01627 Hpt domain Eco28_RS16965 PF12801 4Fe-4S binding domain Eco28_RS16970 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system Eco28_RS16975 PF15939 Putative antitoxin of bacterial toxin-antitoxin system Eco28_RS16985 PF00313 'Cold-shock' DNA-binding domain Eco28_RS16990 PF00313 'Cold-shock' DNA-binding domain Eco28_RS17010 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF Eco28_RS17015 PF06251 Capsule biosynthesis GfcC Eco28_RS17020 PF06082 Exopolysaccharide biosynthesis protein YbjH Eco28_RS17025 PF18412 Outer-membrane lipoprotein Wza C-terminal domain Eco28_RS17025 PF10531 SLBB domain Eco28_RS17025 PF02563 Polysaccharide biosynthesis/export protein Eco28_RS17030 PF01451 Low molecular weight phosphotyrosine protein phosphatase Eco28_RS17035 PF13614 AAA domain Eco28_RS17035 PF13807 G-rich domain on putative tyrosine kinase Eco28_RS17035 PF02706 Chain length determinant protein Eco28_RS17040 PF00328 Histidine phosphatase superfamily (branch 2) Eco28_RS17045 PF08173 Membrane bound YbgT-like protein Eco28_RS17050 PF02322 Cytochrome bd terminal oxidase subunit II Eco28_RS17055 PF01654 Cytochrome bd terminal oxidase subunit I Eco28_RS17060 PF04809 HupH hydrogenase expression protein, C-terminal conserved region Eco28_RS17065 PF07449 Hydrogenase-1 expression protein HyaE Eco28_RS17070 PF01750 Hydrogenase maturation protease Eco28_RS17075 PF01292 Prokaryotic cytochrome b561 Eco28_RS17080 PF00374 Nickel-dependent hydrogenase Eco28_RS17085 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Eco28_RS17085 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal Eco28_RS17095 PF01027 Inhibitor of apoptosis-promoting Bax1 Eco28_RS17100 PF04358 DsrC like protein Eco28_RS17105 PF00708 Acylphosphatase Eco28_RS17110 PF10672 S-adenosylmethionine-dependent methyltransferase Eco28_RS17110 PF17785 PUA-like domain Eco28_RS17115 PF08755 Hemimethylated DNA-binding protein YccV like Eco28_RS17120 PF13380 CoA binding domain Eco28_RS17125 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) Eco28_RS17130 PF02142 MGS-like domain Eco28_RS17135 PF12462 DNA helicase IV / RNA helicase N terminal Eco28_RS17135 PF00580 UvrD/REP helicase N-terminal domain Eco28_RS17135 PF13361 UvrD-like helicase C-terminal domain Eco28_RS17140 PF03733 Inner membrane component domain Eco28_RS17145 PF12805 FUSC-like inner membrane protein yccS Eco28_RS17150 PF04994 TfoX C-terminal domain Eco28_RS17150 PF04993 TfoX N-terminal domain Eco28_RS17155 PF03846 Cell division inhibitor SulA Eco28_RS17165 PF01389 OmpA-like transmembrane domain Eco28_RS17165 PF00691 OmpA family Eco28_RS17170 PF17414 MatP C-terminal ribbon-helix-helix domain Eco28_RS17170 PF06303 MatP N-terminal domain Eco28_RS17175 PF13654 AAA domain Eco28_RS17175 PF05362 Lon protease (S16) C-terminal proteolytic domain Eco28_RS17180 PF07977 FabA-like domain Eco28_RS17185 PF04957 Ribosome modulation factor Eco28_RS17190 PF03886 ABC-type transport auxiliary lipoprotein component Eco28_RS17195 PF02470 MlaD protein Eco28_RS17200 PF04403 Paraquat-inducible protein A Eco28_RS17205 PF00005 ABC transporter Eco28_RS17205 PF12848 ABC transporter Eco28_RS17205 PF16326 ABC transporter C-terminal domain Eco28_RS17210 PF10672 S-adenosylmethionine-dependent methyltransferase Eco28_RS17210 PF02926 THUMP domain Eco28_RS17210 PF01170 Putative RNA methylase family UPF0020 Eco28_RS17215 PF03476 MOSC N-terminal beta barrel domain Eco28_RS17215 PF03473 MOSC domain Eco28_RS17215 PF00111 2Fe-2S iron-sulfur cluster binding domain Eco28_RS17220 PF07126 Cell-division protein ZapC Eco28_RS17225 PF01180 Dihydroorotate dehydrogenase Eco28_RS17230 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS17230 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS17235 PF00419 Fimbrial protein Eco28_RS17240 PF00419 Fimbrial protein Eco28_RS17250 PF13953 PapC C-terminal domain Eco28_RS17250 PF13954 PapC N-terminal domain Eco28_RS17250 PF00577 Outer membrane usher protein Eco28_RS17265 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS17265 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS17270 PF00419 Fimbrial protein Eco28_RS17280 PF03358 NADPH-dependent FMN reductase Eco28_RS17285 PF09084 NMT1/THI5 like Eco28_RS17290 PF00296 Luciferase-like monooxygenase Eco28_RS17295 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS17300 PF00005 ABC transporter Eco28_RS17305 PF01433 Peptidase family M1 domain Eco28_RS17305 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Eco28_RS17305 PF11940 Domain of unknown function (DUF3458) Ig-like fold Eco28_RS17310 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Eco28_RS17310 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Eco28_RS17315 PF01336 OB-fold nucleic acid binding domain Eco28_RS17315 PF00152 tRNA synthetases class II (D, K and N) Eco28_RS17320 PF00267 Gram-negative porin Eco28_RS17330 PF00155 Aminotransferase class I and II Eco28_RS17335 PF00753 Metallo-beta-lactamase superfamily Eco28_RS17340 PF05951 Bacterial protein of unknown function (DUF882) Eco28_RS17350 PF01471 Putative peptidoglycan binding domain Eco28_RS17350 PF03734 L,D-transpeptidase catalytic domain Eco28_RS17355 PF04310 MukB N-terminal Eco28_RS17355 PF16330 MukB hinge domain Eco28_RS17360 PF04288 MukE-like family Eco28_RS17365 PF17192 MukF middle domain Eco28_RS17365 PF17193 MukF C-terminal domain Eco28_RS17365 PF03882 MukF winged-helix domain Eco28_RS17370 PF13847 Methyltransferase domain Eco28_RS17375 PF02698 DUF218 domain Eco28_RS17380 PF01636 Phosphotransferase enzyme family Eco28_RS17385 PF02348 Cytidylyltransferase Eco28_RS17390 PF03966 Trm112p-like protein Eco28_RS17395 PF06224 Winged helix DNA-binding domain Eco28_RS17400 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Eco28_RS17405 PF00664 ABC transporter transmembrane region Eco28_RS17405 PF00005 ABC transporter Eco28_RS17410 PF03772 Competence protein Eco28_RS17410 PF00753 Metallo-beta-lactamase superfamily Eco28_RS17415 PF00216 Bacterial DNA-binding protein Eco28_RS17420 PF00575 S1 RNA binding domain Eco28_RS17425 PF02224 Cytidylate kinase Eco28_RS17435 PF01435 Peptidase family M48 Eco28_RS17440 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Eco28_RS17445 PF00266 Aminotransferase class-V Eco28_RS17450 PF04239 Protein of unknown function (DUF421) Eco28_RS17455 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Eco28_RS17455 PF18381 YcaO cyclodehydratase C-terminal domain Eco28_RS17460 PF01226 Formate/nitrite transporter Eco28_RS17465 PF01228 Glycine radical Eco28_RS17465 PF02901 Pyruvate formate lyase-like Eco28_RS17470 PF04055 Radical SAM superfamily Eco28_RS17475 PF03466 LysR substrate binding domain Eco28_RS17475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS17480 PF13520 Amino acid permease Eco28_RS17490 PF13520 Amino acid permease Eco28_RS17495 PF07690 Major Facilitator Superfamily Eco28_RS17500 PF00857 Isochorismatase family Eco28_RS17505 PF04976 DMSO reductase anchor subunit (DmsC) Eco28_RS17510 PF12800 4Fe-4S binding domain Eco28_RS17510 PF13247 4Fe-4S dicluster domain Eco28_RS17515 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS17515 PF01568 Molydopterin dinucleotide binding domain Eco28_RS17515 PF00384 Molybdopterin oxidoreductase Eco28_RS17520 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Eco28_RS17520 PF02403 Seryl-tRNA synthetase N-terminal domain Eco28_RS17525 PF12002 MgsA AAA+ ATPase C terminal Eco28_RS17525 PF00004 ATPase family associated with various cellular activities (AAA) Eco28_RS17525 PF16193 AAA C-terminal domain Eco28_RS17530 PF03548 Outer membrane lipoprotein carrier protein LolA Eco28_RS17535 PF09397 Ftsk gamma domain Eco28_RS17535 PF17854 FtsK alpha domain Eco28_RS17535 PF01580 FtsK/SpoIIIE family Eco28_RS17535 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Eco28_RS17540 PF01037 Lrp/AsnC ligand binding domain Eco28_RS17550 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS17555 PF00005 ABC transporter Eco28_RS17555 PF00664 ABC transporter transmembrane region Eco28_RS17560 PF00005 ABC transporter Eco28_RS17560 PF00664 ABC transporter transmembrane region Eco28_RS17565 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Eco28_RS17575 PF01176 Translation initiation factor 1A / IF-1 Eco28_RS17600 PF06755 CbtA_toxin of type IV toxin-antitoxin system Eco28_RS17605 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A Eco28_RS17615 PF06174 Protein of unknown function (DUF987) Eco28_RS17620 PF04002 RadC-like JAB domain Eco28_RS17625 PF03230 Antirestriction protein Eco28_RS17630 PF06067 Domain of unknown function (DUF932) Eco28_RS17640 PF13018 Extended Signal Peptide of Type V secretion system Eco28_RS17640 PF16168 Adhesin of bacterial autotransporter system, probable stalk Eco28_RS17640 PF03797 Autotransporter beta-domain Eco28_RS17660 PF02342 TerD domain Eco28_RS17670 PF02342 TerD domain Eco28_RS17675 PF02342 TerD domain Eco28_RS17680 PF03741 Integral membrane protein TerC family Eco28_RS17685 PF05099 Tellurite resistance protein TerB Eco28_RS17690 PF02342 TerD domain Eco28_RS17695 PF02342 TerD domain Eco28_RS17715 PF15608 PELOTA RNA binding domain Eco28_RS17715 PF11202 Phosphoribosyl transferase (PRTase) Eco28_RS17800 PF00589 Phage integrase family Eco28_RS17800 PF13356 Arm DNA-binding domain Eco28_RS17805 PF00004 ATPase family associated with various cellular activities (AAA) Eco28_RS17805 PF10431 C-terminal, D2-small domain, of ClpB protein Eco28_RS17805 PF02861 Clp amino terminal domain, pathogenicity island component Eco28_RS17805 PF17871 AAA lid domain Eco28_RS17805 PF07724 AAA domain (Cdc48 subfamily) Eco28_RS17810 PF02617 ATP-dependent Clp protease adaptor protein ClpS Eco28_RS17815 PF00313 'Cold-shock' DNA-binding domain Eco28_RS17820 PF02687 FtsX-like permease family Eco28_RS17820 PF12704 MacB-like periplasmic core domain Eco28_RS17820 PF00005 ABC transporter Eco28_RS17825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS17830 PF04393 Protein of unknown function (DUF535) Eco28_RS17835 PF11398 Protein of unknown function (DUF2813) Eco28_RS17840 PF00230 Major intrinsic protein Eco28_RS17850 PF03956 Lysine exporter LysO Eco28_RS17855 PF03063 Prismane/CO dehydrogenase family Eco28_RS17860 PF00970 Oxidoreductase FAD-binding domain Eco28_RS17860 PF00111 2Fe-2S iron-sulfur cluster binding domain Eco28_RS17860 PF00175 Oxidoreductase NAD-binding domain Eco28_RS17865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Eco28_RS17865 PF00205 Thiamine pyrophosphate enzyme, central domain Eco28_RS17865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Eco28_RS17870 PF01212 Beta-eliminating lyase Eco28_RS17875 PF13460 NAD(P)H-binding Eco28_RS17875 PF11066 Protein of unknown function (DUF2867) Eco28_RS17880 PF01370 NAD dependent epimerase/dehydratase family Eco28_RS17885 PF01510 N-acetylmuramoyl-L-alanine amidase Eco28_RS17890 PF01906 Putative heavy-metal-binding Eco28_RS17910 PF12883 Protein of unknown function (DUF3828) Eco28_RS17915 PF00005 ABC transporter Eco28_RS17920 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS17925 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS17930 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS17935 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS17950 PF03611 PTS system sugar-specific permease component Eco28_RS17955 PF05958 tRNA (Uracil-5-)-methyltransferase Eco28_RS17960 PF10767 Protein of unknown function (DUF2593) Eco28_RS17965 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS17970 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS17975 PF00005 ABC transporter Eco28_RS17975 PF08402 TOBE domain Eco28_RS17980 PF13416 Bacterial extracellular solute-binding protein Eco28_RS17990 PF10722 Putative bacterial sensory transduction regulator Eco28_RS17995 PF08443 RimK-like ATP-grasp domain Eco28_RS17995 PF18030 RimK PreATP-grasp domain Eco28_RS18000 PF00881 Nitroreductase family Eco28_RS18005 PF07214 Protein of unknown function (DUF1418) Eco28_RS18010 PF00462 Glutaredoxin Eco28_RS18015 PF11045 Putative inner membrane protein of Enterobacteriaceae Eco28_RS18020 PF06826 Predicted Permease Membrane Region Eco28_RS18020 PF02080 TrkA-C domain Eco28_RS18030 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS18035 PF07690 Major Facilitator Superfamily Eco28_RS18050 PF07690 Major Facilitator Superfamily Eco28_RS18055 PF01569 PAP2 superfamily Eco28_RS18060 PF00455 DeoR C terminal sensor domain Eco28_RS18060 PF08220 DeoR-like helix-turn-helix domain Eco28_RS18065 PF07943 Penicillin-binding protein 5, C-terminal domain Eco28_RS18065 PF00768 D-alanyl-D-alanine carboxypeptidase Eco28_RS18070 PF13417 Glutathione S-transferase, N-terminal domain Eco28_RS18070 PF00043 Glutathione S-transferase, C-terminal domain Eco28_RS18075 PF07995 Glucose / Sorbosone dehydrogenase Eco28_RS18080 PF10799 Biofilm formation protein (YliH/bssR) Eco28_RS18085 PF04055 Radical SAM superfamily Eco28_RS18085 PF00919 Uncharacterized protein family UPF0004 Eco28_RS18085 PF18693 TRAM domain Eco28_RS18100 PF17156 Gammaproteobacterial periplasmic sensor domain Eco28_RS18100 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS18105 PF17153 Periplasmic sensor domain, extracellular Eco28_RS18105 PF00563 EAL domain Eco28_RS18115 PF17153 Periplasmic sensor domain, extracellular Eco28_RS18115 PF00563 EAL domain Eco28_RS18120 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS18120 PF12911 N-terminal TM domain of oligopeptide transport permease C Eco28_RS18125 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS18130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS18135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Eco28_RS18135 PF00005 ABC transporter Eco28_RS18140 PF01112 Asparaginase Eco28_RS18145 PF03454 MoeA C-terminal region (domain IV) Eco28_RS18145 PF00994 Probable molybdopterin binding domain Eco28_RS18145 PF03453 MoeA N-terminal region (domain I and II) Eco28_RS18150 PF00899 ThiF family Eco28_RS18155 PF00923 Transaldolase/Fructose-6-phosphate aldolase Eco28_RS18160 PF04055 Radical SAM superfamily Eco28_RS18165 PF01228 Glycine radical Eco28_RS18165 PF02901 Pyruvate formate lyase-like Eco28_RS18175 PF07350 Protein of unknown function (DUF1479) Eco28_RS18180 PF00005 ABC transporter Eco28_RS18180 PF12848 ABC transporter Eco28_RS18185 PF17969 L,D-transpeptidase C-terminal domain Eco28_RS18185 PF03734 L,D-transpeptidase catalytic domain Eco28_RS18190 PF03600 Citrate transporter Eco28_RS18195 PF01325 Iron dependent repressor, N-terminal DNA binding domain Eco28_RS18195 PF02742 Iron dependent repressor, metal binding and dimerisation domain Eco28_RS18205 PF00884 Sulfatase Eco28_RS18210 PF13505 Outer membrane protein beta-barrel domain Eco28_RS18215 PF00892 EamA-like transporter family Eco28_RS18220 PF00210 Ferritin-like domain Eco28_RS18235 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS18240 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS18245 PF00005 ABC transporter Eco28_RS18250 PF00924 Mechanosensitive ion channel Eco28_RS18255 PF05971 RNA methyltransferase Eco28_RS18260 PF07338 Protein of unknown function (DUF1471) Eco28_RS18265 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS18265 PF00593 TonB dependent receptor Eco28_RS18270 PF18331 PKHD-type hydroxylase C-terminal domain Eco28_RS18270 PF13640 2OG-Fe(II) oxygenase superfamily Eco28_RS18275 PF01258 Prokaryotic dksA/traR C4-type zinc finger Eco28_RS18280 PF07338 Protein of unknown function (DUF1471) Eco28_RS18285 PF02615 Malate/L-lactate dehydrogenase Eco28_RS18290 PF02885 Glycosyl transferase family, helical bundle domain Eco28_RS18295 PF13307 Helicase C-terminal domain Eco28_RS18295 PF00270 DEAD/DEAH box helicase Eco28_RS18295 PF06733 DEAD_2 Eco28_RS18320 PF00270 DEAD/DEAH box helicase Eco28_RS18320 PF00271 Helicase conserved C-terminal domain Eco28_RS18325 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS18325 PF09209 Tetracyclin repressor-like, C-terminal domain Eco28_RS18330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS18335 PF00005 ABC transporter Eco28_RS18350 PF11076 Putative inner membrane protein YbhQ Eco28_RS18355 PF03372 Endonuclease/Exonuclease/phosphatase family Eco28_RS18360 PF13091 PLD-like domain Eco28_RS18365 PF03706 Lysylphosphatidylglycerol synthase TM region Eco28_RS18370 PF01027 Inhibitor of apoptosis-promoting Bax1 Eco28_RS18375 PF01027 Inhibitor of apoptosis-promoting Bax1 Eco28_RS18380 PF02391 MoaE protein Eco28_RS18385 PF02597 ThiS family Eco28_RS18390 PF01967 MoaC family Eco28_RS18395 PF00994 Probable molybdopterin binding domain Eco28_RS18400 PF06463 Molybdenum Cofactor Synthesis C Eco28_RS18400 PF04055 Radical SAM superfamily Eco28_RS18405 PF01933 Uncharacterised protein family UPF0052 Eco28_RS18410 PF00271 Helicase conserved C-terminal domain Eco28_RS18410 PF02151 UvrB/uvrC motif Eco28_RS18410 PF04851 Type III restriction enzyme, res subunit Eco28_RS18410 PF17757 UvrB interaction domain Eco28_RS18410 PF12344 Ultra-violet resistance protein B Eco28_RS18420 PF08241 Methyltransferase domain Eco28_RS18425 PF00155 Aminotransferase class I and II Eco28_RS18430 PF06968 Biotin and Thiamin Synthesis associated domain Eco28_RS18430 PF04055 Radical SAM superfamily Eco28_RS18435 PF00202 Aminotransferase class-III Eco28_RS18440 PF01161 Phosphatidylethanolamine-binding protein Eco28_RS18450 PF01095 Pectinesterase Eco28_RS18455 PF00330 Aconitase family (aconitate hydratase) Eco28_RS18455 PF00694 Aconitase C-terminal domain Eco28_RS18460 PF00939 Sodium:sulfate symporter transmembrane region Eco28_RS18465 PF04303 PrpF protein Eco28_RS18470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS18470 PF03466 LysR substrate binding domain Eco28_RS18475 PF10282 Lactonase, 7-bladed beta-propeller Eco28_RS18485 PF03459 TOBE domain Eco28_RS18485 PF00005 ABC transporter Eco28_RS18490 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS18505 PF10766 Multidrug efflux pump-associated protein AcrZ Eco28_RS18510 PF03459 TOBE domain Eco28_RS18510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS18515 PF00005 ABC transporter Eco28_RS18520 PF16363 GDP-mannose 4,6 dehydratase Eco28_RS18525 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain Eco28_RS18525 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain Eco28_RS18530 PF08544 GHMP kinases C terminal Eco28_RS18530 PF00288 GHMP kinases N terminal domain Eco28_RS18530 PF10509 Galactokinase galactose-binding signature Eco28_RS18535 PF01263 Aldose 1-epimerase Eco28_RS18540 PF00300 Histidine phosphatase superfamily (branch 1) Eco28_RS18545 PF00793 DAHP synthetase I family Eco28_RS18555 PF13985 YbgS-like protein Eco28_RS18560 PF01545 Cation efflux family Eco28_RS18565 PF04973 Nicotinamide mononucleotide transporter Eco28_RS18570 PF02445 Quinolinate synthetase A protein Eco28_RS18605 PF16331 TolA binding protein trimerisation Eco28_RS18605 PF13174 Tetratricopeptide repeat Eco28_RS18610 PF00691 OmpA family Eco28_RS18615 PF04052 TolB amino-terminal domain Eco28_RS18615 PF07676 WD40-like Beta Propeller Repeat Eco28_RS18620 PF06519 TolA C-terminal Eco28_RS18625 PF02472 Biopolymer transport protein ExbD/TolR Eco28_RS18630 PF01618 MotA/TolQ/ExbB proton channel family Eco28_RS18635 PF03061 Thioesterase superfamily Eco28_RS18640 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) Eco28_RS18645 PF08173 Membrane bound YbgT-like protein Eco28_RS18650 PF02322 Cytochrome bd terminal oxidase subunit II Eco28_RS18655 PF01654 Cytochrome bd terminal oxidase subunit I Eco28_RS18675 PF02310 B12 binding domain Eco28_RS18680 PF13941 MutL protein Eco28_RS18685 PF06368 Methylaspartate mutase E chain (MutE) Eco28_RS18690 PF05034 Methylaspartate ammonia-lyase N-terminus Eco28_RS18690 PF07476 Methylaspartate ammonia-lyase C-terminus Eco28_RS18705 PF00375 Sodium:dicarboxylate symporter family Eco28_RS18710 PF05683 Fumarase C-terminus Eco28_RS18710 PF05681 Fumarate hydratase (Fumerase) Eco28_RS18715 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Eco28_RS18715 PF12557 Cob(I)alamin adenosyltransferase N terminal Eco28_RS18720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS18720 PF03466 LysR substrate binding domain Eco28_RS18735 PF00549 CoA-ligase Eco28_RS18735 PF02629 CoA binding domain Eco28_RS18740 PF08442 ATP-grasp domain Eco28_RS18740 PF00549 CoA-ligase Eco28_RS18745 PF02817 e3 binding domain Eco28_RS18745 PF00364 Biotin-requiring enzyme Eco28_RS18745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Eco28_RS18750 PF02779 Transketolase, pyrimidine binding domain Eco28_RS18750 PF00676 Dehydrogenase E1 component Eco28_RS18750 PF16870 2-oxoglutarate dehydrogenase C-terminal Eco28_RS18750 PF16078 2-oxoglutarate dehydrogenase N-terminus Eco28_RS18755 PF13085 2Fe-2S iron-sulfur cluster binding domain Eco28_RS18760 PF00890 FAD binding domain Eco28_RS18760 PF02910 Fumarate reductase flavoprotein C-term Eco28_RS18765 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Eco28_RS18770 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Eco28_RS18785 PF00285 Citrate synthase, C-terminal domain Eco28_RS18790 PF00419 Fimbrial protein Eco28_RS18795 PF00577 Outer membrane usher protein Eco28_RS18795 PF13953 PapC C-terminal domain Eco28_RS18795 PF13954 PapC N-terminal domain Eco28_RS18800 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS18800 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS18805 PF00419 Fimbrial protein Eco28_RS18810 PF05145 Transition state regulatory protein AbrB Eco28_RS18815 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Eco28_RS18815 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Eco28_RS18815 PF06827 Zinc finger found in FPG and IleRS Eco28_RS18820 PF03746 LamB/YcsF family Eco28_RS18825 PF02626 Carboxyltransferase domain, subdomain A and B Eco28_RS18830 PF02682 Carboxyltransferase domain, subdomain C and D Eco28_RS18835 PF01784 NIF3 (NGG1p interacting factor 3) Eco28_RS18840 PF00854 POT family Eco28_RS18845 PF00875 DNA photolyase Eco28_RS18845 PF03441 FAD binding domain of DNA photolyase Eco28_RS18850 PF08349 Protein of unknown function (DUF1722) Eco28_RS18855 PF10725 Protein of unknown function (DUF2517) Eco28_RS18860 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) Eco28_RS18865 PF03814 Potassium-transporting ATPase A subunit Eco28_RS18875 PF02669 K+-transporting ATPase, c chain Eco28_RS18880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS18880 PF02702 Osmosensitive K+ channel His kinase sensor domain Eco28_RS18880 PF13492 GAF domain Eco28_RS18880 PF13493 Domain of unknown function (DUF4118) Eco28_RS18880 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS18885 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS18885 PF00072 Response regulator receiver domain Eco28_RS18895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Eco28_RS18895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Eco28_RS18895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Eco28_RS18895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Eco28_RS18900 PF17206 SeqA protein N-terminal domain Eco28_RS18900 PF03925 SeqA protein C-terminal domain Eco28_RS18905 PF12697 Alpha/beta hydrolase family Eco28_RS18910 PF01402 Ribbon-helix-helix protein, copG family Eco28_RS18915 PF00258 Flavodoxin Eco28_RS18925 PF01475 Ferric uptake regulator family Eco28_RS18930 PF13982 YbfN-like lipoprotein Eco28_RS18935 PF03573 outer membrane porin, OprD family Eco28_RS18940 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Eco28_RS18940 PF00749 tRNA synthetases class I (E and Q), catalytic domain Eco28_RS18945 PF00367 phosphotransferase system, EIIB Eco28_RS18945 PF02378 Phosphotransferase system, EIIC Eco28_RS18945 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Eco28_RS18950 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Eco28_RS18955 PF01979 Amidohydrolase family Eco28_RS18960 PF00480 ROK family Eco28_RS18960 PF01047 MarR family Eco28_RS18965 PF13344 Haloacid dehalogenase-like hydrolase Eco28_RS18975 PF13537 Glutamine amidotransferase domain Eco28_RS18975 PF00733 Asparagine synthase Eco28_RS19020 PF01494 FAD binding domain Eco28_RS19030 PF00919 Uncharacterized protein family UPF0004 Eco28_RS19030 PF01938 TRAM domain Eco28_RS19030 PF04055 Radical SAM superfamily Eco28_RS19035 PF02562 PhoH-like protein Eco28_RS19040 PF02130 Uncharacterized protein family UPF0054 Eco28_RS19045 PF03471 Transporter associated domain Eco28_RS19045 PF00571 CBS domain Eco28_RS19050 PF00795 Carbon-nitrogen hydrolase Eco28_RS19055 PF00497 Bacterial extracellular solute-binding proteins, family 3 Eco28_RS19060 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS19065 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS19070 PF00005 ABC transporter Eco28_RS19075 PF01156 Inosine-uridine preferring nucleoside hydrolase Eco28_RS19080 PF00012 Hsp70 protein Eco28_RS19090 PF06889 Protein of unknown function (DUF1266) Eco28_RS19095 PF08238 Sel1 repeat Eco28_RS19105 PF06889 Protein of unknown function (DUF1266) Eco28_RS19110 PF08238 Sel1 repeat Eco28_RS19115 PF07295 Zinc-ribbon containing domain Eco28_RS19120 PF13603 Leucyl-tRNA synthetase, Domain 2 Eco28_RS19120 PF08264 Anticodon-binding domain of tRNA Eco28_RS19120 PF00133 tRNA synthetases class I (I, L, M and V) Eco28_RS19125 PF04390 Lipopolysaccharide-assembly Eco28_RS19130 PF14840 Processivity clamp loader gamma complex DNA pol III C-term Eco28_RS19130 PF06144 DNA polymerase III, delta subunit Eco28_RS19135 PF01467 Cytidylyltransferase-like Eco28_RS19140 PF00300 Histidine phosphatase superfamily (branch 1) Eco28_RS19150 PF02590 Predicted SPOUT methyltransferase Eco28_RS19155 PF03717 Penicillin-binding Protein dimerisation domain Eco28_RS19155 PF00905 Penicillin binding protein transpeptidase domain Eco28_RS19160 PF01098 Cell cycle protein Eco28_RS19165 PF05036 Sporulation related domain Eco28_RS19165 PF03330 Lytic transglycolase Eco28_RS19170 PF00768 D-alanyl-D-alanine carboxypeptidase Eco28_RS19170 PF07943 Penicillin-binding protein 5, C-terminal domain Eco28_RS19175 PF04359 Protein of unknown function (DUF493) Eco28_RS19180 PF03099 Biotin/lipoate A/B protein ligase family Eco28_RS19190 PF03466 LysR substrate binding domain Eco28_RS19190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS19200 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Eco28_RS19200 PF04055 Radical SAM superfamily Eco28_RS19205 PF02416 mttA/Hcf106 family Eco28_RS19210 PF00795 Carbon-nitrogen hydrolase Eco28_RS19215 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Eco28_RS19220 PF00313 'Cold-shock' DNA-binding domain Eco28_RS19225 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP Eco28_RS19235 PF03606 C4-dicarboxylate anaerobic carrier Eco28_RS19240 PF00072 Response regulator receiver domain Eco28_RS19240 PF12431 Transcriptional regulator Eco28_RS19245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS19245 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Eco28_RS19245 PF00989 PAS fold Eco28_RS19245 PF17203 Single cache domain 3 Eco28_RS19255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS19255 PF00989 PAS fold Eco28_RS19255 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Eco28_RS19255 PF17203 Single cache domain 3 Eco28_RS19260 PF08218 Citrate lyase ligase C-terminal domain Eco28_RS19265 PF06857 Malonate decarboxylase delta subunit (MdcD) Eco28_RS19270 PF03328 HpcH/HpaI aldolase/citrate lyase family Eco28_RS19275 PF04223 Citrate lyase, alpha subunit (CitF) Eco28_RS19280 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase Eco28_RS19285 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase Eco28_RS19290 PF00939 Sodium:sulfate symporter transmembrane region Eco28_RS19295 PF00445 Ribonuclease T2 family Eco28_RS19305 PF01272 Transcription elongation factor, GreA/GreB, C-term Eco28_RS19305 PF14760 Rnk N-terminus Eco28_RS19315 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS19315 PF00107 Zinc-binding dehydrogenase Eco28_RS19315 PF13823 Alcohol dehydrogenase GroES-associated Eco28_RS19320 PF00582 Universal stress protein family Eco28_RS19325 PF13192 Thioredoxin domain Eco28_RS19325 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS19335 PF00578 AhpC/TSA family Eco28_RS19335 PF10417 C-terminal domain of 1-Cys peroxiredoxin Eco28_RS19340 PF13098 Thioredoxin-like domain Eco28_RS19350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS19350 PF03466 LysR substrate binding domain Eco28_RS19355 PF11922 Domain of unknown function (DUF3440) Eco28_RS19355 PF01507 Phosphoadenosine phosphosulfate reductase family Eco28_RS19360 PF02195 ParB-like nuclease domain Eco28_RS19365 PF00155 Aminotransferase class I and II Eco28_RS19370 PF00465 Iron-containing alcohol dehydrogenase Eco28_RS19375 PF04328 Selenoprotein, putative Eco28_RS19380 PF02554 Carbon starvation protein CstA Eco28_RS19380 PF13722 5TM C-terminal transporter carbon starvation CstA Eco28_RS19385 PF03061 Thioesterase superfamily Eco28_RS19395 PF00550 Phosphopantetheine attachment site Eco28_RS19395 PF00857 Isochorismatase family Eco28_RS19400 PF00501 AMP-binding enzyme Eco28_RS19400 PF13193 AMP-binding enzyme C-terminal domain Eco28_RS19405 PF00425 chorismate binding enzyme Eco28_RS19410 PF01497 Periplasmic binding protein Eco28_RS19415 PF05977 Transmembrane secretion effector Eco28_RS19420 PF01032 FecCD transport family Eco28_RS19425 PF01032 FecCD transport family Eco28_RS19430 PF00005 ABC transporter Eco28_RS19435 PF02706 Chain length determinant protein Eco28_RS19440 PF00501 AMP-binding enzyme Eco28_RS19440 PF00550 Phosphopantetheine attachment site Eco28_RS19440 PF00668 Condensation domain Eco28_RS19440 PF00975 Thioesterase domain Eco28_RS19445 PF03621 MbtH-like protein Eco28_RS19450 PF11806 Domain of unknown function (DUF3327) Eco28_RS19450 PF00756 Putative esterase Eco28_RS19455 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS19455 PF00593 TonB dependent receptor Eco28_RS19460 PF01648 4'-phosphopantetheinyl transferase superfamily Eco28_RS19460 PF17837 4'-phosphopantetheinyl transferase N-terminal domain Eco28_RS19465 PF01848 Hok/gef family Eco28_RS19475 PF01848 Hok/gef family Eco28_RS19490 PF04107 Glutamate-cysteine ligase family 2(GCS2) Eco28_RS19495 PF06643 Protein of unknown function (DUF1158) Eco28_RS19500 PF04237 YjbR Eco28_RS19505 PF00881 Nitroreductase family Eco28_RS19510 PF00924 Mechanosensitive ion channel Eco28_RS19515 PF00324 Amino acid permease Eco28_RS19520 PF00873 AcrB/AcrD/AcrF family Eco28_RS19525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS19525 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS19530 PF11604 Copper binding periplasmic protein CusF Eco28_RS19535 PF02321 Outer membrane efflux protein Eco28_RS19545 PF00072 Response regulator receiver domain Eco28_RS19545 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS19550 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS19550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS19550 PF00672 HAMP domain Eco28_RS19555 PF04717 Type VI secretion system, phage-baseplate injector Eco28_RS19565 PF05488 PAAR motif Eco28_RS19565 PF05593 RHS Repeat Eco28_RS19575 PF05488 PAAR motif Eco28_RS19575 PF05593 RHS Repeat Eco28_RS19595 PF01609 Transposase DDE domain Eco28_RS19595 PF13808 DDE_Tnp_1-associated Eco28_RS19600 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Eco28_RS19600 PF13632 Glycosyl transferase family group 2 Eco28_RS19605 PF13283 Bacteriophage N adsorption protein A C-term Eco28_RS19610 PF14488 Domain of unknown function (DUF4434) Eco28_RS19620 PF12833 Helix-turn-helix domain Eco28_RS19635 PF00072 Response regulator receiver domain Eco28_RS19635 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS19640 PF00419 Fimbrial protein Eco28_RS19645 PF00419 Fimbrial protein Eco28_RS19650 PF00577 Outer membrane usher protein Eco28_RS19650 PF13954 PapC N-terminal domain Eco28_RS19650 PF13953 PapC C-terminal domain Eco28_RS19655 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS19655 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS19665 PF05598 Transposase domain (DUF772) Eco28_RS19665 PF01609 Transposase DDE domain Eco28_RS19670 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS19670 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS19675 PF00419 Fimbrial protein Eco28_RS19680 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Eco28_RS19680 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eco28_RS19690 PF04307 LexA-binding, inner membrane-associated putative hydrolase Eco28_RS19695 PF09190 DALR domain Eco28_RS19695 PF01406 tRNA synthetases class I (C) catalytic domain Eco28_RS19700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Eco28_RS19705 PF12850 Calcineurin-like phosphoesterase superfamily domain Eco28_RS19715 PF00731 AIR carboxylase Eco28_RS19720 PF02222 ATP-grasp domain Eco28_RS19720 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Eco28_RS19725 PF00696 Amino acid kinase family Eco28_RS19730 PF11392 Protein of unknown function (DUF2877) Eco28_RS19735 PF06545 Protein of unknown function (DUF1116) Eco28_RS19740 PF00549 CoA-ligase Eco28_RS19740 PF02629 CoA binding domain Eco28_RS19745 PF02615 Malate/L-lactate dehydrogenase Eco28_RS19750 PF01546 Peptidase family M20/M25/M40 Eco28_RS19755 PF05899 Protein of unknown function (DUF861) Eco28_RS19755 PF07883 Cupin domain Eco28_RS19760 PF02595 Glycerate kinase family Eco28_RS19765 PF00860 Permease family Eco28_RS19770 PF01979 Amidohydrolase family Eco28_RS19775 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Eco28_RS19780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Eco28_RS19780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Eco28_RS19785 PF01261 Xylose isomerase-like TIM barrel Eco28_RS19790 PF00205 Thiamine pyrophosphate enzyme, central domain Eco28_RS19790 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Eco28_RS19790 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Eco28_RS19795 PF01614 Bacterial transcriptional regulator Eco28_RS19795 PF09339 IclR helix-turn-helix domain Eco28_RS19800 PF04115 Ureidoglycolate lyase Eco28_RS19805 PF03466 LysR substrate binding domain Eco28_RS19805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS19825 PF14220 Domain of unknown function (DUF4329) Eco28_RS19825 PF03527 RHS protein Eco28_RS19825 PF05593 RHS Repeat Eco28_RS19835 PF00005 ABC transporter Eco28_RS19840 PF13472 GDSL-like Lipase/Acylhydrolase family Eco28_RS19845 PF00106 short chain dehydrogenase Eco28_RS19850 PF00085 Thioredoxin Eco28_RS19855 PF03649 Uncharacterised protein family (UPF0014) Eco28_RS19860 PF00005 ABC transporter Eco28_RS19865 PF16200 C-terminal region of band_7 Eco28_RS19865 PF01145 SPFH domain / Band 7 family Eco28_RS19870 PF01957 NfeD-like C-terminal, partner-binding Eco28_RS19900 PF13411 MerR HTH family regulatory protein Eco28_RS19905 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS19910 PF00005 ABC transporter Eco28_RS19910 PF00664 ABC transporter transmembrane region Eco28_RS19910 PF03412 Peptidase C39 family Eco28_RS19925 PF13520 Amino acid permease Eco28_RS19930 PF04960 Glutaminase Eco28_RS19935 PF00403 Heavy-metal-associated domain Eco28_RS19940 PF01381 Helix-turn-helix Eco28_RS19945 PF01963 TraB family Eco28_RS19955 PF04073 Aminoacyl-tRNA editing domain Eco28_RS19960 PF00149 Calcineurin-like phosphoesterase Eco28_RS19960 PF02872 5'-nucleotidase, C-terminal domain Eco28_RS19970 PF07690 Major Facilitator Superfamily Eco28_RS19975 PF00999 Sodium/hydrogen exchanger family Eco28_RS19975 PF02254 TrkA-N domain Eco28_RS19980 PF00294 pfkB family carbohydrate kinase Eco28_RS19985 PF07859 alpha/beta hydrolase fold Eco28_RS19990 PF00762 Ferrochelatase Eco28_RS19995 PF05191 Adenylate kinase, active site lid Eco28_RS20005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS20005 PF00183 Hsp90 protein Eco28_RS20010 PF13662 Toprim domain Eco28_RS20010 PF02132 RecR protein Eco28_RS20015 PF02575 YbaB/EbfC DNA-binding family Eco28_RS20020 PF12170 DNA polymerase III tau subunit V interacting with alpha Eco28_RS20020 PF12169 DNA polymerase III subunits gamma and tau domain III Eco28_RS20020 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Eco28_RS20025 PF00156 Phosphoribosyl transferase domain Eco28_RS20035 PF04304 Protein of unknown function (DUF454) Eco28_RS20040 PF07445 Primosomal replication protein priC Eco28_RS20045 PF10689 Protein of unknown function (DUF2496) Eco28_RS20050 PF00924 Mechanosensitive ion channel Eco28_RS20050 PF12795 Mechanosensitive ion channel porin domain Eco28_RS20050 PF12794 Mechanosensitive ion channel inner membrane domain 1 Eco28_RS20065 PF01609 Transposase DDE domain Eco28_RS20065 PF05598 Transposase domain (DUF772) Eco28_RS20070 PF08361 MAATS-type transcriptional repressor, C-terminal region Eco28_RS20070 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS20075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS20075 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS20080 PF00873 AcrB/AcrD/AcrF family Eco28_RS20085 PF10757 Biofilm formation regulator YbaJ Eco28_RS20090 PF05321 Haemolysin expression modulating protein Eco28_RS20095 PF14602 Hexapeptide repeat of succinyl-transferase Eco28_RS20095 PF12464 Maltose acetyltransferase Eco28_RS20100 PF10777 Inner membrane protein YlaC Eco28_RS20105 PF00563 EAL domain Eco28_RS20105 PF12792 CSS motif domain associated with EAL Eco28_RS20110 PF07237 Protein of unknown function (DUF1428) Eco28_RS20120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Eco28_RS20125 PF09619 Type III secretion system lipoprotein chaperone (YscW) Eco28_RS20135 PF00909 Ammonium Transporter Family Eco28_RS20140 PF00543 Nitrogen regulatory protein P-II Eco28_RS20145 PF00664 ABC transporter transmembrane region Eco28_RS20145 PF00005 ABC transporter Eco28_RS20150 PF00664 ABC transporter transmembrane region Eco28_RS20150 PF00005 ABC transporter Eco28_RS20155 PF01037 Lrp/AsnC ligand binding domain Eco28_RS20155 PF13404 AsnC-type helix-turn-helix domain Eco28_RS20165 PF12793 Sugar transport-related sRNA regulator N-term Eco28_RS20165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS20170 PF06508 Queuosine biosynthesis protein QueC Eco28_RS20185 PF13145 PPIC-type PPIASE domain Eco28_RS20190 PF00216 Bacterial DNA-binding protein Eco28_RS20195 PF00004 ATPase family associated with various cellular activities (AAA) Eco28_RS20195 PF02190 ATP-dependent protease La (LON) substrate-binding domain Eco28_RS20195 PF05362 Lon protease (S16) C-terminal proteolytic domain Eco28_RS20200 PF10431 C-terminal, D2-small domain, of ClpB protein Eco28_RS20200 PF06689 ClpX C4-type zinc finger Eco28_RS20200 PF07724 AAA domain (Cdc48 subfamily) Eco28_RS20205 PF00574 Clp protease Eco28_RS20210 PF05697 Bacterial trigger factor protein (TF) Eco28_RS20210 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Eco28_RS20210 PF05698 Bacterial trigger factor protein (TF) C-terminus Eco28_RS20220 PF01722 BolA-like protein Eco28_RS20230 PF03923 Uncharacterized lipoprotein Eco28_RS20230 PF08139 Prokaryotic membrane lipoprotein lipid attachment site Eco28_RS20235 PF07690 Major Facilitator Superfamily Eco28_RS20240 PF06481 COX Aromatic Rich Motif Eco28_RS20240 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Eco28_RS20245 PF00115 Cytochrome C and Quinol oxidase polypeptide I Eco28_RS20250 PF00510 Cytochrome c oxidase subunit III Eco28_RS20255 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Eco28_RS20260 PF01040 UbiA prenyltransferase family Eco28_RS20265 PF07690 Major Facilitator Superfamily Eco28_RS20270 PF04461 Protein of unknown function (DUF520) Eco28_RS20275 PF08546 Ketopantoate reductase PanE/ApbA C terminal Eco28_RS20275 PF02558 Ketopantoate reductase PanE/ApbA Eco28_RS20280 PF01965 DJ-1/PfpI family Eco28_RS20285 PF02568 Thiamine biosynthesis protein (ThiI) Eco28_RS20285 PF02926 THUMP domain Eco28_RS20295 PF02609 Exonuclease VII small subunit Eco28_RS20300 PF00348 Polyprenyl synthetase Eco28_RS20305 PF02780 Transketolase, C-terminal domain Eco28_RS20305 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Eco28_RS20305 PF02779 Transketolase, pyrimidine binding domain Eco28_RS20310 PF00248 Aldo/keto reductase family Eco28_RS20320 PF04608 Phosphatidylglycerophosphatase A Eco28_RS20325 PF02769 AIR synthase related protein, C-terminal domain Eco28_RS20325 PF00586 AIR synthase related protein, N-terminal domain Eco28_RS20330 PF01029 NusB family Eco28_RS20335 PF00885 6,7-dimethyl-8-ribityllumazine synthase Eco28_RS20340 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Eco28_RS20340 PF01872 RibD C-terminal domain Eco28_RS20345 PF03477 ATP cone domain Eco28_RS20350 PF11622 Protein of unknown function (DUF3251) Eco28_RS20355 PF03502 Nucleoside-specific channel-forming protein, Tsx Eco28_RS20360 PF01844 HNH endonuclease Eco28_RS20365 PF07549 SecD/SecF GG Motif Eco28_RS20365 PF02355 Protein export membrane protein Eco28_RS20370 PF13721 SecD export protein N-terminal TM region Eco28_RS20370 PF07549 SecD/SecF GG Motif Eco28_RS20370 PF02355 Protein export membrane protein Eco28_RS20375 PF02699 Preprotein translocase subunit Eco28_RS20380 PF01702 Queuine tRNA-ribosyltransferase Eco28_RS20385 PF02547 Queuosine biosynthesis protein Eco28_RS20390 PF04336 Acyl carrier protein phosphodiesterase Eco28_RS20400 PF00128 Alpha amylase, catalytic domain Eco28_RS20400 PF02903 Alpha amylase, N-terminal ig-like domain Eco28_RS20405 PF00324 Amino acid permease Eco28_RS20410 PF05525 Branched-chain amino acid transport protein Eco28_RS20415 PF00989 PAS fold Eco28_RS20415 PF11808 Phosphate regulon sensor protein PhoR Eco28_RS20415 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS20415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS20420 PF00072 Response regulator receiver domain Eco28_RS20420 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS20425 PF00149 Calcineurin-like phosphoesterase Eco28_RS20425 PF12320 Type 5 capsule protein repressor C-terminal domain Eco28_RS20430 PF13476 AAA domain Eco28_RS20435 PF07690 Major Facilitator Superfamily Eco28_RS20440 PF00480 ROK family Eco28_RS20445 PF04381 Putative exonuclease, RdgC Eco28_RS20450 PF10971 Protein of unknown function (DUF2773) Eco28_RS20460 PF06865 Pyrimidine/purine nucleoside phosphorylase Eco28_RS20465 PF07302 AroM protein Eco28_RS20475 PF16362 YaiA protein Eco28_RS20480 PF01202 Shikimate kinase Eco28_RS20485 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Eco28_RS20490 PF14748 Pyrroline-5-carboxylate reductase dimerisation Eco28_RS20490 PF03807 NADP oxidoreductase coenzyme F420-dependent Eco28_RS20495 PF05230 MASE2 domain Eco28_RS20495 PF00990 Diguanylate cyclase, GGDEF domain Eco28_RS20500 PF07769 psiF repeat Eco28_RS20505 PF00245 Alkaline phosphatase Eco28_RS20510 PF10796 Sigma-S stabilisation anti-adaptor protein Eco28_RS20520 PF01820 D-ala D-ala ligase N-terminus Eco28_RS20520 PF07478 D-ala D-ala ligase C-terminus Eco28_RS20525 PF10953 Protein of unknown function (DUF2754) Eco28_RS20530 PF10954 Protein of unknown function (DUF2755) Eco28_RS20535 PF07759 Protein of unknown function (DUF1615) Eco28_RS20540 PF05992 SbmA/BacA-like family Eco28_RS20550 PF00144 Beta-lactamase Eco28_RS20555 PF15977 Winged helix-turn-helix DNA binding Eco28_RS20560 PF03212 Pertactin Eco28_RS20560 PF03797 Autotransporter beta-domain Eco28_RS20570 PF03797 Autotransporter beta-domain Eco28_RS20575 PF00490 Delta-aminolevulinic acid dehydratase Eco28_RS20580 PF02668 Taurine catabolism dioxygenase TauD, TfdA family Eco28_RS20585 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS20590 PF00005 ABC transporter Eco28_RS20595 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Eco28_RS20600 PF00072 Response regulator receiver domain Eco28_RS20600 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS20605 PF05231 MASE1 Eco28_RS20605 PF07730 Histidine kinase Eco28_RS20605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS20610 PF07690 Major Facilitator Superfamily Eco28_RS20620 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS20625 PF08402 TOBE domain Eco28_RS20625 PF00005 ABC transporter Eco28_RS20630 PF02583 Metal-sensitive transcriptional repressor Eco28_RS20635 PF00107 Zinc-binding dehydrogenase Eco28_RS20635 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS20640 PF00756 Putative esterase Eco28_RS20645 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) Eco28_RS20650 PF07690 Major Facilitator Superfamily Eco28_RS20655 PF07836 DmpG-like communication domain Eco28_RS20655 PF00682 HMGL-like Eco28_RS20660 PF01118 Semialdehyde dehydrogenase, NAD binding domain Eco28_RS20660 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation Eco28_RS20665 PF01557 Fumarylacetoacetate (FAA) hydrolase family Eco28_RS20670 PF12697 Alpha/beta hydrolase family Eco28_RS20680 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Eco28_RS20685 PF01494 FAD binding domain Eco28_RS20690 PF09339 IclR helix-turn-helix domain Eco28_RS20690 PF01614 Bacterial transcriptional regulator Eco28_RS20695 PF12706 Beta-lactamase superfamily domain Eco28_RS20705 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS20715 PF02836 Glycosyl hydrolases family 2, TIM barrel domain Eco28_RS20715 PF00703 Glycosyl hydrolases family 2 Eco28_RS20715 PF16353 Domain of unknown function(DUF4981) Eco28_RS20715 PF02837 Glycosyl hydrolases family 2, sugar binding domain Eco28_RS20715 PF02929 Beta galactosidase small chain Eco28_RS20720 PF01306 LacY proton/sugar symporter Eco28_RS20725 PF12464 Maltose acetyltransferase Eco28_RS20725 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS20730 PF07690 Major Facilitator Superfamily Eco28_RS20735 PF02560 Cyanate lyase C-terminal domain Eco28_RS20740 PF00484 Carbonic anhydrase Eco28_RS20745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS20745 PF03466 LysR substrate binding domain Eco28_RS20750 PF07969 Amidohydrolase family Eco28_RS20755 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin Eco28_RS20760 PF00501 AMP-binding enzyme Eco28_RS20760 PF13193 AMP-binding enzyme C-terminal domain Eco28_RS20760 PF16177 Acetyl-coenzyme A synthetase N-terminus Eco28_RS20765 PF03972 MmgE/PrpD family Eco28_RS20770 PF00285 Citrate synthase, C-terminal domain Eco28_RS20780 PF06506 Propionate catabolism activator Eco28_RS20780 PF02954 Bacterial regulatory protein, Fis family Eco28_RS20780 PF00158 Sigma-54 interaction domain Eco28_RS20785 PF07338 Protein of unknown function (DUF1471) Eco28_RS20790 PF01810 LysE type translocator Eco28_RS20805 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS20805 PF00107 Zinc-binding dehydrogenase Eco28_RS20810 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS20815 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS20820 PF00005 ABC transporter Eco28_RS20825 PF13407 Periplasmic binding protein domain Eco28_RS20835 PF07969 Amidohydrolase family Eco28_RS20840 PF00696 Amino acid kinase family Eco28_RS20850 PF06545 Protein of unknown function (DUF1116) Eco28_RS20855 PF00549 CoA-ligase Eco28_RS20855 PF02629 CoA binding domain Eco28_RS20860 PF11392 Protein of unknown function (DUF2877) Eco28_RS20865 PF12796 Ankyrin repeats (3 copies) Eco28_RS20875 PF06496 Protein of unknown function (DUF1097) Eco28_RS20880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS20880 PF03466 LysR substrate binding domain Eco28_RS20885 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS20885 PF00563 EAL domain Eco28_RS20895 PF02028 BCCT, betaine/carnitine/choline family transporter Eco28_RS20905 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS20905 PF13977 BetI-type transcriptional repressor, C-terminal Eco28_RS20910 PF00171 Aldehyde dehydrogenase family Eco28_RS20915 PF00732 GMC oxidoreductase Eco28_RS20915 PF05199 GMC oxidoreductase Eco28_RS20935 PF00563 EAL domain Eco28_RS20935 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS20945 PF03797 Autotransporter beta-domain Eco28_RS20945 PF03212 Pertactin Eco28_RS20965 PF02589 LUD domain Eco28_RS20970 PF13183 4Fe-4S dicluster domain Eco28_RS20970 PF11870 Domain of unknown function (DUF3390) Eco28_RS20970 PF02589 LUD domain Eco28_RS20975 PF02754 Cysteine-rich domain Eco28_RS20980 PF12852 Cupin Eco28_RS20980 PF12833 Helix-turn-helix domain Eco28_RS20985 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Eco28_RS20985 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS20990 PF07338 Protein of unknown function (DUF1471) Eco28_RS20995 PF04224 Protein of unknown function, DUF417 Eco28_RS21005 PF12833 Helix-turn-helix domain Eco28_RS21010 PF11924 Inverse autotransporter, beta-domain Eco28_RS21015 PF00248 Aldo/keto reductase family Eco28_RS21020 PF00248 Aldo/keto reductase family Eco28_RS21025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS21025 PF03466 LysR substrate binding domain Eco28_RS21030 PF03466 LysR substrate binding domain Eco28_RS21030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS21035 PF12146 Serine aminopeptidase, S33 Eco28_RS21040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Eco28_RS21055 PF01197 Ribosomal protein L31 Eco28_RS21060 PF00444 Ribosomal protein L36 Eco28_RS21075 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS21080 PF16449 Fimbrillin MatB Eco28_RS21085 PF18649 EcpB C-terminal domain Eco28_RS21090 PF15976 CS1-pili formation C-terminal Eco28_RS21090 PF16967 E-set like domain Eco28_RS21105 PF03692 Putative zinc- or iron-chelating domain Eco28_RS21110 PF07274 Protein of unknown function (DUF1440) Eco28_RS21120 PF10518 TAT (twin-arginine translocation) pathway signal sequence Eco28_RS21120 PF00111 2Fe-2S iron-sulfur cluster binding domain Eco28_RS21120 PF01799 [2Fe-2S] binding domain Eco28_RS21125 PF03450 CO dehydrogenase flavoprotein C-terminal domain Eco28_RS21125 PF00941 FAD binding domain in molybdopterin dehydrogenase Eco28_RS21130 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Eco28_RS21130 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Eco28_RS21135 PF02625 XdhC and CoxI family Eco28_RS21135 PF13478 XdhC Rossmann domain Eco28_RS21140 PF03466 LysR substrate binding domain Eco28_RS21160 PF06755 CbtA_toxin of type IV toxin-antitoxin system Eco28_RS21165 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A Eco28_RS21170 PF06174 Protein of unknown function (DUF987) Eco28_RS21175 PF04002 RadC-like JAB domain Eco28_RS21180 PF03230 Antirestriction protein Eco28_RS21185 PF06067 Domain of unknown function (DUF932) Eco28_RS21190 PF06006 Bacterial protein of unknown function (DUF905) Eco28_RS21195 PF16168 Adhesin of bacterial autotransporter system, probable stalk Eco28_RS21195 PF03797 Autotransporter beta-domain Eco28_RS21195 PF13018 Extended Signal Peptide of Type V secretion system Eco28_RS21225 PF05598 Transposase domain (DUF772) Eco28_RS21225 PF01609 Transposase DDE domain Eco28_RS21240 PF10544 T5orf172 domain Eco28_RS21265 PF02126 Phosphotriesterase family Eco28_RS21290 PF00294 pfkB family carbohydrate kinase Eco28_RS21300 PF01527 Transposase Eco28_RS21320 PF00206 Lyase Eco28_RS21320 PF10415 Fumarase C C-terminus Eco28_RS21325 PF03605 Anaerobic c4-dicarboxylate membrane transporter Eco28_RS21330 PF01177 Asp/Glu/Hydantoin racemase Eco28_RS21335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS21335 PF03466 LysR substrate binding domain Eco28_RS21350 PF07690 Major Facilitator Superfamily Eco28_RS21355 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Eco28_RS21355 PF13378 Enolase C-terminal domain-like Eco28_RS21360 PF01081 KDPG and KHG aldolase Eco28_RS21365 PF05035 2-keto-3-deoxy-galactonokinase Eco28_RS21370 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS21370 PF07729 FCD domain Eco28_RS21400 PF01527 Transposase Eco28_RS21400 PF13276 HTH-like domain Eco28_RS21400 PF00665 Integrase core domain Eco28_RS21405 PF05717 IS66 Orf2 like protein Eco28_RS21410 PF13007 Transposase C of IS166 homeodomain Eco28_RS21410 PF13817 IS66 C-terminal element Eco28_RS21410 PF13005 zinc-finger binding domain of transposase IS66 Eco28_RS21410 PF03050 Transposase IS66 family Eco28_RS21415 PF07690 Major Facilitator Superfamily Eco28_RS21415 PF00083 Sugar (and other) transporter Eco28_RS21420 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS21425 PF01156 Inosine-uridine preferring nucleoside hydrolase Eco28_RS21430 PF02308 MgtC family Eco28_RS21450 PF01112 Asparaginase Eco28_RS21465 PF01385 Probable transposase Eco28_RS21465 PF07282 Putative transposase DNA-binding domain Eco28_RS21465 PF12323 Helix-turn-helix domain Eco28_RS21470 PF03606 C4-dicarboxylate anaerobic carrier Eco28_RS21475 PF07687 Peptidase dimerisation domain Eco28_RS21475 PF01546 Peptidase family M20/M25/M40 Eco28_RS21480 PF10415 Fumarase C C-terminus Eco28_RS21480 PF00206 Lyase Eco28_RS21485 PF03605 Anaerobic c4-dicarboxylate membrane transporter Eco28_RS21490 PF00710 Asparaginase, N-terminal Eco28_RS21490 PF17763 Glutaminase/Asparaginase C-terminal domain Eco28_RS21495 PF00072 Response regulator receiver domain Eco28_RS21525 PF13148 Protein of unknown function (DUF3987) Eco28_RS21530 PF13148 Protein of unknown function (DUF3987) Eco28_RS21555 PF00171 Aldehyde dehydrogenase family Eco28_RS21560 PF00696 Amino acid kinase family Eco28_RS21560 PF01472 PUA domain Eco28_RS21565 PF00267 Gram-negative porin Eco28_RS21570 PF07417 Sigma factor-binding transcriptional regulator Crl Eco28_RS21575 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) Eco28_RS21580 PF00156 Phosphoribosyl transferase domain Eco28_RS21585 PF07687 Peptidase dimerisation domain Eco28_RS21585 PF01546 Peptidase family M20/M25/M40 Eco28_RS21590 PF00472 RF-1 domain Eco28_RS21600 PF13673 Acetyltransferase (GNAT) domain Eco28_RS21605 PF00817 impB/mucB/samB family Eco28_RS21605 PF11799 impB/mucB/samB family C-terminal domain Eco28_RS21605 PF11798 IMS family HHH motif Eco28_RS21610 PF13677 Membrane MotB of proton-channel complex MotA/MotB Eco28_RS21610 PF00691 OmpA family Eco28_RS21615 PF00771 FHIPEP family Eco28_RS21630 PF00877 NlpC/P60 family Eco28_RS21635 PF04221 RelB antitoxin Eco28_RS21640 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ Eco28_RS21645 PF03734 L,D-transpeptidase catalytic domain Eco28_RS21650 PF13230 Glutamine amidotransferases class-II Eco28_RS21655 PF13580 SIS domain Eco28_RS21660 PF09317 Domain of unknown function (DUF1974) Eco28_RS21660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Eco28_RS21660 PF02770 Acyl-CoA dehydrogenase, middle domain Eco28_RS21660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Eco28_RS21670 PF00795 Carbon-nitrogen hydrolase Eco28_RS21675 PF13808 DDE_Tnp_1-associated Eco28_RS21675 PF01609 Transposase DDE domain Eco28_RS21685 PF00665 Integrase core domain Eco28_RS21685 PF01527 Transposase Eco28_RS21685 PF13276 HTH-like domain Eco28_RS21690 PF05717 IS66 Orf2 like protein Eco28_RS21695 PF13007 Transposase C of IS166 homeodomain Eco28_RS21695 PF13817 IS66 C-terminal element Eco28_RS21695 PF13005 zinc-finger binding domain of transposase IS66 Eco28_RS21695 PF03050 Transposase IS66 family Eco28_RS21710 PF04717 Type VI secretion system, phage-baseplate injector Eco28_RS21720 PF05638 Type VI secretion system effector, Hcp Eco28_RS21735 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath Eco28_RS21745 PF05947 Type VI secretion system, TssF Eco28_RS21765 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE Eco28_RS21790 PF06744 Type VI secretion protein IcmF C-terminal Eco28_RS21790 PF14331 ImcF-related N-terminal domain Eco28_RS21790 PF06761 Intracellular multiplication and human macrophage-killing Eco28_RS21835 PF00929 Exonuclease Eco28_RS21840 PF00075 RNase H Eco28_RS21845 PF08241 Methyltransferase domain Eco28_RS21850 PF00753 Metallo-beta-lactamase superfamily Eco28_RS21850 PF16123 Hydroxyacylglutathione hydrolase C-terminus Eco28_RS21855 PF01476 LysM domain Eco28_RS21855 PF01464 Transglycosylase SLT domain Eco28_RS21860 PF08241 Methyltransferase domain Eco28_RS21865 PF03372 Endonuclease/Exonuclease/phosphatase family Eco28_RS21870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS21870 PF03466 LysR substrate binding domain Eco28_RS21875 PF00248 Aldo/keto reductase family Eco28_RS21915 PF09383 NIL domain Eco28_RS21915 PF00005 ABC transporter Eco28_RS21920 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS21925 PF03180 NLPA lipoprotein Eco28_RS21930 PF16358 RcsF lipoprotein Eco28_RS21935 PF18389 TrmO C-terminal domain Eco28_RS21935 PF01980 tRNA-methyltransferase O Eco28_RS21940 PF04073 Aminoacyl-tRNA editing domain Eco28_RS21940 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Eco28_RS21940 PF03129 Anticodon binding domain Eco28_RS21945 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Eco28_RS21950 PF04170 NlpE N-terminal domain Eco28_RS21950 PF17185 NlpE C-terminal OB domain Eco28_RS21955 PF00472 RF-1 domain Eco28_RS21960 PF07152 YaeQ protein Eco28_RS21965 PF06786 Uncharacterised protein family (UPF0253) Eco28_RS21970 PF07073 Modulator of Rho-dependent transcription termination (ROF) Eco28_RS21975 PF11734 TilS substrate C-terminal domain Eco28_RS21975 PF09179 TilS substrate binding domain Eco28_RS21975 PF01171 PP-loop family Eco28_RS21980 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Eco28_RS21985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Eco28_RS21985 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Eco28_RS21985 PF01276 Orn/Lys/Arg decarboxylase, major domain Eco28_RS21990 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Eco28_RS21995 PF14579 Helix-hairpin-helix motif Eco28_RS21995 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Eco28_RS21995 PF07733 Bacterial DNA polymerase III alpha NTPase domain Eco28_RS21995 PF01336 OB-fold nucleic acid binding domain Eco28_RS21995 PF02811 PHP domain Eco28_RS22000 PF01351 Ribonuclease HII Eco28_RS22005 PF02684 Lipid-A-disaccharide synthetase Eco28_RS22010 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Eco28_RS22010 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS22015 PF07977 FabA-like domain Eco28_RS22020 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Eco28_RS22020 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS22025 PF03938 Outer membrane protein (OmpH-like) Eco28_RS22030 PF01103 Surface antigen Eco28_RS22030 PF07244 Surface antigen variable number repeat Eco28_RS22035 PF02163 Peptidase family M50 Eco28_RS22035 PF17820 PDZ domain Eco28_RS22045 PF01255 Putative undecaprenyl diphosphate synthase Eco28_RS22050 PF13288 DXP reductoisomerase C-terminal domain Eco28_RS22050 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Eco28_RS22050 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Eco28_RS22055 PF01765 Ribosome recycling factor Eco28_RS22060 PF00696 Amino acid kinase family Eco28_RS22065 PF00889 Elongation factor TS Eco28_RS22075 PF00318 Ribosomal protein S2 Eco28_RS22085 PF00557 Metallopeptidase family M24 Eco28_RS22090 PF01842 ACT domain Eco28_RS22090 PF01909 Nucleotidyltransferase domain Eco28_RS22090 PF01966 HD domain Eco28_RS22090 PF08335 GlnD PII-uridylyltransferase Eco28_RS22095 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS22095 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Eco28_RS22095 PF14602 Hexapeptide repeat of succinyl-transferase Eco28_RS22100 PF11944 Protein of unknown function (DUF3461) Eco28_RS22105 PF05651 Putative sugar diacid recognition Eco28_RS22105 PF17853 GGDEF-like domain Eco28_RS22105 PF13556 PucR C-terminal helix-turn-helix domain Eco28_RS22110 PF00595 PDZ domain Eco28_RS22120 PF01966 HD domain Eco28_RS22120 PF13286 Phosphohydrolase-associated domain Eco28_RS22125 PF01048 Phosphorylase superfamily Eco28_RS22130 PF01497 Periplasmic binding protein Eco28_RS22135 PF03458 UPF0126 domain Eco28_RS22140 PF01521 Iron-sulphur cluster biosynthesis Eco28_RS22145 PF00654 Voltage gated chloride channel Eco28_RS22150 PF00202 Aminotransferase class-III Eco28_RS22155 PF01032 FecCD transport family Eco28_RS22160 PF01497 Periplasmic binding protein Eco28_RS22165 PF00005 ABC transporter Eco28_RS22170 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS22170 PF00593 TonB dependent receptor Eco28_RS22175 PF00905 Penicillin binding protein transpeptidase domain Eco28_RS22175 PF00912 Transglycosylase Eco28_RS22175 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal Eco28_RS22175 PF14814 Bifunctional transglycosylase second domain Eco28_RS22180 PF08482 ATP-dependent helicase C-terminal Eco28_RS22180 PF00271 Helicase conserved C-terminal domain Eco28_RS22180 PF04408 Helicase associated domain (HA2) Eco28_RS22180 PF00270 DEAD/DEAH box helicase Eco28_RS22185 PF02834 LigT like Phosphoesterase Eco28_RS22190 PF17746 SfsA N-terminal OB domain Eco28_RS22190 PF03749 Sugar fermentation stimulation protein RE domain Eco28_RS22195 PF01258 Prokaryotic dksA/traR C4-type zinc finger Eco28_RS22200 PF00749 tRNA synthetases class I (E and Q), catalytic domain Eco28_RS22205 PF01743 Poly A polymerase head domain Eco28_RS22205 PF12627 Probable RNA and SrmB- binding site of polymerase A Eco28_RS22205 PF12626 Polymerase A arginine-rich C-terminus Eco28_RS22210 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Eco28_RS22220 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS22220 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS22225 PF13954 PapC N-terminal domain Eco28_RS22225 PF13953 PapC C-terminal domain Eco28_RS22225 PF00577 Outer membrane usher protein Eco28_RS22230 PF00419 Fimbrial protein Eco28_RS22250 PF02548 Ketopantoate hydroxymethyltransferase Eco28_RS22255 PF02569 Pantoate-beta-alanine ligase Eco28_RS22265 PF04754 Putative transposase, YhgA-like Eco28_RS22280 PF02261 Aspartate decarboxylase Eco28_RS22285 PF01522 Polysaccharide deacetylase Eco28_RS22290 PF03610 PTS system fructose IIA component Eco28_RS22295 PF01061 ABC-2 type transporter Eco28_RS22300 PF00005 ABC transporter Eco28_RS22305 PF00484 Carbonic anhydrase Eco28_RS22310 PF00156 Phosphoribosyl transferase domain Eco28_RS22315 PF01011 PQQ enzyme repeat Eco28_RS22320 PF00394 Multicopper oxidase Eco28_RS22320 PF07732 Multicopper oxidase Eco28_RS22320 PF07731 Multicopper oxidase Eco28_RS22325 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) Eco28_RS22330 PF17284 Spermidine synthase tetramerisation domain Eco28_RS22335 PF02675 S-adenosylmethionine decarboxylase Eco28_RS22340 PF06062 Uncharacterised protein family (UPF0231) Eco28_RS22345 PF11791 Aconitate B N-terminal domain Eco28_RS22345 PF00330 Aconitase family (aconitate hydratase) Eco28_RS22345 PF06434 Aconitate hydratase 2 N-terminus Eco28_RS22355 PF11737 Protein of unknown function (DUF3300) Eco28_RS22360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Eco28_RS22360 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS22365 PF02817 e3 binding domain Eco28_RS22365 PF00364 Biotin-requiring enzyme Eco28_RS22365 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Eco28_RS22370 PF00456 Transketolase, thiamine diphosphate binding domain Eco28_RS22370 PF17831 Pyruvate dehydrogenase E1 component middle domain Eco28_RS22380 PF07729 FCD domain Eco28_RS22380 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS22385 PF00324 Amino acid permease Eco28_RS22395 PF04616 Glycosyl hydrolases family 43 Eco28_RS22395 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain Eco28_RS22400 PF17113 Regulatory signalling modulator protein AmpE Eco28_RS22405 PF01510 N-acetylmuramoyl-L-alanine amidase Eco28_RS22410 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Eco28_RS22410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Eco28_RS22420 PF07963 Prokaryotic N-terminal methylation motif Eco28_RS22425 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain Eco28_RS22425 PF00437 Type II/IV secretion system protein Eco28_RS22430 PF00482 Type II secretion system (T2SS), protein F Eco28_RS22435 PF00478 IMP dehydrogenase / GMP reductase domain Eco28_RS22440 PF01121 Dephospho-CoA kinase Eco28_RS22445 PF07072 Cell division protein Eco28_RS22450 PF03884 DNA gyrase inhibitor YacG Eco28_RS22455 PF00293 NUDIX domain Eco28_RS22460 PF01043 SecA preprotein cross-linking domain Eco28_RS22460 PF07517 SecA DEAD-like domain Eco28_RS22460 PF02810 SEC-C motif Eco28_RS22460 PF07516 SecA Wing and Scaffold domain Eco28_RS22465 PF06558 Secretion monitor precursor protein (SecM) Eco28_RS22470 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Eco28_RS22475 PF00091 Tubulin/FtsZ family, GTPase domain Eco28_RS22475 PF12327 FtsZ family, C-terminal domain Eco28_RS22480 PF02491 SHS2 domain inserted in FTSA Eco28_RS22485 PF03799 Cell division protein FtsQ Eco28_RS22485 PF08478 POTRA domain, FtsQ-type Eco28_RS22490 PF07478 D-ala D-ala ligase C-terminus Eco28_RS22490 PF01820 D-ala D-ala ligase N-terminus Eco28_RS22495 PF02875 Mur ligase family, glutamate ligase domain Eco28_RS22495 PF08245 Mur ligase middle domain Eco28_RS22495 PF01225 Mur ligase family, catalytic domain Eco28_RS22500 PF03033 Glycosyltransferase family 28 N-terminal domain Eco28_RS22500 PF04101 Glycosyltransferase family 28 C-terminal domain Eco28_RS22505 PF01098 Cell cycle protein Eco28_RS22510 PF02875 Mur ligase family, glutamate ligase domain Eco28_RS22510 PF08245 Mur ligase middle domain Eco28_RS22515 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Eco28_RS22515 PF00953 Glycosyl transferase family 4 Eco28_RS22520 PF08245 Mur ligase middle domain Eco28_RS22520 PF02875 Mur ligase family, glutamate ligase domain Eco28_RS22520 PF01225 Mur ligase family, catalytic domain Eco28_RS22525 PF01225 Mur ligase family, catalytic domain Eco28_RS22525 PF02875 Mur ligase family, glutamate ligase domain Eco28_RS22525 PF08245 Mur ligase middle domain Eco28_RS22530 PF03717 Penicillin-binding Protein dimerisation domain Eco28_RS22530 PF00905 Penicillin binding protein transpeptidase domain Eco28_RS22535 PF04999 Cell division protein FtsL Eco28_RS22540 PF01795 MraW methylase family Eco28_RS22545 PF02381 MraZ protein, putative antitoxin-like Eco28_RS22555 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Eco28_RS22555 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS22565 PF10369 Small subunit of acetolactate synthase Eco28_RS22570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Eco28_RS22570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Eco28_RS22570 PF00205 Thiamine pyrophosphate enzyme, central domain Eco28_RS22575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS22575 PF03466 LysR substrate binding domain Eco28_RS22580 PF08054 Leucine operon leader peptide Eco28_RS22585 PF08502 LeuA allosteric (dimerisation) domain Eco28_RS22585 PF00682 HMGL-like Eco28_RS22590 PF00180 Isocitrate/isopropylmalate dehydrogenase Eco28_RS22595 PF00330 Aconitase family (aconitate hydratase) Eco28_RS22600 PF00694 Aconitase C-terminal domain Eco28_RS22610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Eco28_RS22610 PF12793 Sugar transport-related sRNA regulator N-term Eco28_RS22625 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS22630 PF00005 ABC transporter Eco28_RS22635 PF09335 SNARE associated Golgi protein Eco28_RS22640 PF12833 Helix-turn-helix domain Eco28_RS22640 PF02311 AraC-like ligand binding domain Eco28_RS22650 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Eco28_RS22655 PF11762 L-arabinose isomerase C-terminal domain Eco28_RS22655 PF02610 L-arabinose isomerase Eco28_RS22660 PF00596 Class II Aldolase and Adducin N-terminal domain Eco28_RS22665 PF03104 DNA polymerase family B, exonuclease domain Eco28_RS22665 PF00136 DNA polymerase family B Eco28_RS22670 PF18337 RapA N-terminal Tudor like domain Eco28_RS22670 PF12137 RNA polymerase recycling family C-terminal Eco28_RS22670 PF18339 RapA N-terminal Tudor like domain 1 Eco28_RS22670 PF00271 Helicase conserved C-terminal domain Eco28_RS22670 PF00176 SNF2 family N-terminal domain Eco28_RS22675 PF00849 RNA pseudouridylate synthase Eco28_RS22685 PF05099 Tellurite resistance protein TerB Eco28_RS22685 PF00226 DnaJ domain Eco28_RS22690 PF03968 OstA-like protein Eco28_RS22690 PF04453 LPS transport system D Eco28_RS22695 PF09312 SurA N-terminal domain Eco28_RS22695 PF00639 PPIC-type PPIASE domain Eco28_RS22700 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Eco28_RS22705 PF00398 Ribosomal RNA adenine dimethylase Eco28_RS22710 PF04379 ApaG domain Eco28_RS22715 PF00149 Calcineurin-like phosphoesterase Eco28_RS22730 PF00186 Dihydrofolate reductase Eco28_RS22735 PF00999 Sodium/hydrogen exchanger family Eco28_RS22735 PF02254 TrkA-N domain Eco28_RS22740 PF02525 Flavodoxin-like fold Eco28_RS22745 PF00083 Sugar (and other) transporter Eco28_RS22755 PF01494 FAD binding domain Eco28_RS22760 PF01012 Electron transfer flavoprotein domain Eco28_RS22760 PF00766 Electron transfer flavoprotein FAD-binding domain Eco28_RS22765 PF01012 Electron transfer flavoprotein domain Eco28_RS22770 PF02028 BCCT, betaine/carnitine/choline family transporter Eco28_RS22775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Eco28_RS22775 PF02770 Acyl-CoA dehydrogenase, middle domain Eco28_RS22775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Eco28_RS22780 PF02515 CoA-transferase family III Eco28_RS22785 PF00501 AMP-binding enzyme Eco28_RS22785 PF13193 AMP-binding enzyme C-terminal domain Eco28_RS22790 PF00378 Enoyl-CoA hydratase/isomerase Eco28_RS22795 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS22800 PF07180 CaiF/GrlA transcriptional regulator Eco28_RS22810 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Eco28_RS22810 PF02142 MGS-like domain Eco28_RS22810 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Eco28_RS22815 PF00117 Glutamine amidotransferase class-I Eco28_RS22815 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Eco28_RS22820 PF05173 Dihydrodipicolinate reductase, C-terminus Eco28_RS22820 PF01113 Dihydrodipicolinate reductase, N-terminus Eco28_RS22825 PF01156 Inosine-uridine preferring nucleoside hydrolase Eco28_RS22830 PF02401 LytB protein Eco28_RS22835 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Eco28_RS22840 PF01252 Signal peptidase (SPase) II Eco28_RS22845 PF00133 tRNA synthetases class I (I, L, M and V) Eco28_RS22845 PF06827 Zinc finger found in FPG and IleRS Eco28_RS22845 PF08264 Anticodon-binding domain of tRNA Eco28_RS22850 PF01687 Riboflavin kinase Eco28_RS22850 PF06574 FAD synthetase Eco28_RS22855 PF10837 Protein of unknown function (DUF2575) Eco28_RS22860 PF01649 Ribosomal protein S20 Eco28_RS22870 PF05598 Transposase domain (DUF772) Eco28_RS22870 PF01609 Transposase DDE domain Eco28_RS22885 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS22885 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS22890 PF13954 PapC N-terminal domain Eco28_RS22890 PF13953 PapC C-terminal domain Eco28_RS22890 PF00577 Outer membrane usher protein Eco28_RS22900 PF03466 LysR substrate binding domain Eco28_RS22900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS22905 PF06965 Na+/H+ antiporter 1 Eco28_RS22910 PF01848 Hok/gef family Eco28_RS22915 PF00226 DnaJ domain Eco28_RS22915 PF01556 DnaJ C terminal domain Eco28_RS22915 PF00684 DnaJ central domain Eco28_RS22920 PF00012 Hsp70 protein Eco28_RS22925 PF10807 Protein of unknown function (DUF2541) Eco28_RS22930 PF03981 Ubiquinol-cytochrome C chaperone Eco28_RS22930 PF13099 Domain of unknown function (DUF3944) Eco28_RS22935 PF01184 GPR1/FUN34/yaaH family Eco28_RS22940 PF00994 Probable molybdopterin binding domain Eco28_RS22945 PF00923 Transaldolase/Fructose-6-phosphate aldolase Eco28_RS22950 PF01235 Sodium:alanine symporter family Eco28_RS22955 PF03883 Peroxide stress protein YaaA Eco28_RS22960 PF10697 Protein of unknown function (DUF2502) Eco28_RS22965 PF14821 Threonine synthase N terminus Eco28_RS22965 PF00291 Pyridoxal-phosphate dependent enzyme Eco28_RS22970 PF00288 GHMP kinases N terminal domain Eco28_RS22970 PF08544 GHMP kinases C terminal Eco28_RS22975 PF00696 Amino acid kinase family Eco28_RS22975 PF01842 ACT domain Eco28_RS22975 PF13840 ACT domain Eco28_RS22975 PF00742 Homoserine dehydrogenase Eco28_RS22975 PF03447 Homoserine dehydrogenase, NAD binding domain Eco28_RS22980 PF08254 Threonine leader peptide Eco28_RS22985 PF00588 SpoU rRNA Methylase family Eco28_RS22995 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS22995 PF00072 Response regulator receiver domain Eco28_RS23000 PF06123 Inner membrane protein CreD Eco28_RS23005 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS23005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS23005 PF00672 HAMP domain Eco28_RS23010 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS23010 PF00072 Response regulator receiver domain Eco28_RS23015 PF05981 CreA protein Eco28_RS23020 PF12833 Helix-turn-helix domain Eco28_RS23020 PF06445 GyrI-like small molecule binding domain Eco28_RS23025 PF00300 Histidine phosphatase superfamily (branch 1) Eco28_RS23030 PF01931 Protein of unknown function DUF84 Eco28_RS23035 PF01371 Trp repressor protein Eco28_RS23040 PF01464 Transglycosylase SLT domain Eco28_RS23040 PF14718 Soluble lytic murein transglycosylase L domain Eco28_RS23050 PF00005 ABC transporter Eco28_RS23050 PF12848 ABC transporter Eco28_RS23055 PF01381 Helix-turn-helix Eco28_RS23055 PF13521 AAA domain Eco28_RS23060 PF18073 Rubredoxin metal binding domain Eco28_RS23065 PF18429 Domain of unknown function (DUF5609) Eco28_RS23070 PF10144 Bacterial virulence factor haemolysin Eco28_RS23075 PF10437 Bacterial lipoate protein ligase C-terminus Eco28_RS23075 PF03099 Biotin/lipoate A/B protein ligase family Eco28_RS23085 PF01048 Phosphorylase superfamily Eco28_RS23090 PF01676 Metalloenzyme superfamily Eco28_RS23095 PF02885 Glycosyl transferase family, helical bundle domain Eco28_RS23095 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Eco28_RS23095 PF00591 Glycosyl transferase family, a/b domain Eco28_RS23100 PF01791 DeoC/LacD family aldolase Eco28_RS23105 PF11230 Protein of unknown function (DUF3029) Eco28_RS23110 PF04055 Radical SAM superfamily Eco28_RS23115 PF01026 TatD related DNase Eco28_RS23120 PF01734 Patatin-like phospholipase Eco28_RS23125 PF07043 Protein of unknown function (DUF1328) Eco28_RS23130 PF04972 BON domain Eco28_RS23135 PF03144 Elongation factor Tu domain 2 Eco28_RS23135 PF16658 Class II release factor RF3, C-terminal domain Eco28_RS23135 PF00009 Elongation factor Tu GTP binding domain Eco28_RS23140 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS23145 PF00583 Acetyltransferase (GNAT) family Eco28_RS23150 PF03603 DNA polymerase III psi subunit Eco28_RS23155 PF08468 Methyltransferase small domain N-terminal Eco28_RS23155 PF05175 Methyltransferase small domain Eco28_RS23175 PF07256 Protein of unknown function (DUF1435) Eco28_RS23180 PF06276 Ferric iron reductase FhuF-like transporter Eco28_RS23180 PF11575 FhuF 2Fe-2S C-terminal domain Eco28_RS23185 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS23190 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS23195 PF06738 Putative threonine/serine exporter Eco28_RS23200 PF12821 Threonine/Serine exporter, ThrE Eco28_RS23205 PF17948 DnaT DNA-binding domain Eco28_RS23210 PF01695 IstB-like ATP binding protein Eco28_RS23215 PF10696 Protein of unknown function (DUF2501) Eco28_RS23220 PF00884 Sulfatase Eco28_RS23225 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS23225 PF00107 Zinc-binding dehydrogenase Eco28_RS23230 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS23230 PF07729 FCD domain Eco28_RS23235 PF07690 Major Facilitator Superfamily Eco28_RS23240 PF00672 HAMP domain Eco28_RS23240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Eco28_RS23240 PF02203 Tar ligand binding domain homologue Eco28_RS23255 PF02554 Carbon starvation protein CstA Eco28_RS23255 PF13722 5TM C-terminal transporter carbon starvation CstA Eco28_RS23260 PF04328 Selenoprotein, putative Eco28_RS23265 PF02492 CobW/HypB/UreG, nucleotide-binding domain Eco28_RS23265 PF07683 Cobalamin synthesis protein cobW C-terminal domain Eco28_RS23270 PF01609 Transposase DDE domain Eco28_RS23270 PF05598 Transposase domain (DUF772) Eco28_RS23285 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) Eco28_RS23285 PF04851 Type III restriction enzyme, res subunit Eco28_RS23285 PF00271 Helicase conserved C-terminal domain Eco28_RS23285 PF08463 EcoEI R protein C-terminal Eco28_RS23290 PF12161 HsdM N-terminal domain Eco28_RS23290 PF02384 N-6 DNA Methylase Eco28_RS23295 PF01420 Type I restriction modification DNA specificity domain Eco28_RS23300 PF08845 Toxin SymE, type I toxin-antitoxin system Eco28_RS23310 PF06568 Domain of unknown function (DUF1127) Eco28_RS23315 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS23315 PF00155 Aminotransferase class I and II Eco28_RS23320 PF04754 Putative transposase, YhgA-like Eco28_RS23325 PF07690 Major Facilitator Superfamily Eco28_RS23330 PF04286 Protein of unknown function (DUF445) Eco28_RS23335 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component Eco28_RS23340 PF01869 BadF/BadG/BcrA/BcrD ATPase family Eco28_RS23345 PF11823 Protein of unknown function (DUF3343) Eco28_RS23360 PF06977 SdiA-regulated Eco28_RS23365 PF06779 Uncharacterised MFS-type transporter YbfB Eco28_RS23370 PF09134 Invasin, domain 3 Eco28_RS23370 PF11924 Inverse autotransporter, beta-domain Eco28_RS23370 PF02369 Bacterial Ig-like domain (group 1) Eco28_RS23375 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Eco28_RS23385 PF07670 Nucleoside recognition Eco28_RS23390 PF07670 Nucleoside recognition Eco28_RS23395 PF01979 Amidohydrolase family Eco28_RS23400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS23400 PF03466 LysR substrate binding domain Eco28_RS23405 PF04965 Gene 25-like lysozyme Eco28_RS23415 PF10887 Protein of unknown function (DUF2686) Eco28_RS23420 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS23420 PF07729 FCD domain Eco28_RS23430 PF01232 Mannitol dehydrogenase Rossmann domain Eco28_RS23430 PF08125 Mannitol dehydrogenase C-terminal domain Eco28_RS23435 PF03786 D-mannonate dehydratase (UxuA) Eco28_RS23445 PF02447 GntP family permease Eco28_RS23450 PF09160 FimH, mannose binding Eco28_RS23450 PF00419 Fimbrial protein Eco28_RS23460 PF00419 Fimbrial protein Eco28_RS23465 PF00577 Outer membrane usher protein Eco28_RS23465 PF13954 PapC N-terminal domain Eco28_RS23465 PF13953 PapC C-terminal domain Eco28_RS23470 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS23470 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS23485 PF00271 Helicase conserved C-terminal domain Eco28_RS23485 PF00270 DEAD/DEAH box helicase Eco28_RS23485 PF09369 Domain of unknown function (DUF1998) Eco28_RS23515 PF05598 Transposase domain (DUF772) Eco28_RS23515 PF01609 Transposase DDE domain Eco28_RS23565 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS23565 PF00107 Zinc-binding dehydrogenase Eco28_RS23570 PF01202 Shikimate kinase Eco28_RS23580 PF00107 Zinc-binding dehydrogenase Eco28_RS23580 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS23585 PF00106 short chain dehydrogenase Eco28_RS23590 PF02447 GntP family permease Eco28_RS23595 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS23600 PF05872 Bacterial protein of unknown function (DUF853) Eco28_RS23605 PF03739 Lipopolysaccharide export system permease LptF/LptG Eco28_RS23610 PF03739 Lipopolysaccharide export system permease LptF/LptG Eco28_RS23615 PF00883 Cytosol aminopeptidase family, catalytic domain Eco28_RS23615 PF02789 Cytosol aminopeptidase family, N-terminal domain Eco28_RS23620 PF04364 DNA polymerase III chi subunit, HolC Eco28_RS23625 PF10458 Valyl tRNA synthetase tRNA binding arm Eco28_RS23625 PF00133 tRNA synthetases class I (I, L, M and V) Eco28_RS23625 PF08264 Anticodon-binding domain of tRNA Eco28_RS23630 PF05987 Bacterial protein of unknown function (DUF898) Eco28_RS23635 PF00583 Acetyltransferase (GNAT) family Eco28_RS23640 PF06877 Regulator of ribonuclease activity B Eco28_RS23645 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Eco28_RS23645 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Eco28_RS23655 PF04074 YhcH/YjgK/YiaL Eco28_RS23660 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS23670 PF01042 Endoribonuclease L-PSP Eco28_RS23680 PF08052 PyrBI operon leader peptide Eco28_RS23685 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Eco28_RS23685 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Eco28_RS23690 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Eco28_RS23690 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Eco28_RS23695 PF01042 Endoribonuclease L-PSP Eco28_RS23700 PF00690 Cation transporter/ATPase, N-terminus Eco28_RS23700 PF00689 Cation transporting ATPase, C-terminus Eco28_RS23705 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS23710 PF00367 phosphotransferase system, EIIB Eco28_RS23710 PF02378 Phosphotransferase system, EIIC Eco28_RS23715 PF00128 Alpha amylase, catalytic domain Eco28_RS23715 PF11941 Domain of unknown function (DUF3459) Eco28_RS23720 PF03477 ATP cone domain Eco28_RS23720 PF13597 Anaerobic ribonucleoside-triphosphate reductase Eco28_RS23730 PF07361 Cytochrome b562 Eco28_RS23735 PF01523 Putative modulator of DNA gyrase Eco28_RS23740 PF04751 Protein of unknown function (DUF615) Eco28_RS23745 PF08245 Mur ligase middle domain Eco28_RS23745 PF02875 Mur ligase family, glutamate ligase domain Eco28_RS23745 PF01225 Mur ligase family, catalytic domain Eco28_RS23750 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain Eco28_RS23755 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS23760 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS23765 PF00005 ABC transporter Eco28_RS23770 PF13407 Periplasmic binding protein domain Eco28_RS23775 PF00719 Inorganic pyrophosphatase Eco28_RS23780 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Eco28_RS23785 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Eco28_RS23790 PF00589 Phage integrase family Eco28_RS23790 PF02899 Phage integrase, N-terminal SAM-like domain Eco28_RS23855 PF05840 Bacteriophage replication gene A protein (GPA) Eco28_RS23860 PF06406 StbA protein Eco28_RS23970 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS23975 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS23980 PF07484 Phage Tail Collar Domain Eco28_RS23985 PF00239 Resolvase, N terminal domain Eco28_RS23985 PF02796 Helix-turn-helix domain of resolvase Eco28_RS24015 PF04984 Phage tail sheath protein subtilisin-like domain Eco28_RS24015 PF17482 Phage tail sheath C-terminal domain Eco28_RS24045 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like Eco28_RS24050 PF04357 TamB, inner membrane protein subunit of TAM complex Eco28_RS24055 PF07244 Surface antigen variable number repeat Eco28_RS24055 PF17243 POTRA domain TamA domain 1 Eco28_RS24055 PF01103 Surface antigen Eco28_RS24065 PF01625 Peptide methionine sulfoxide reductase Eco28_RS24070 PF03471 Transporter associated domain Eco28_RS24070 PF00571 CBS domain Eco28_RS24070 PF01595 Cyclin M transmembrane N-terminal domain Eco28_RS24075 PF06526 Protein of unknown function (DUF1107) Eco28_RS24080 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) Eco28_RS24095 PF00459 Inositol monophosphatase family Eco28_RS24100 PF00149 Calcineurin-like phosphoesterase Eco28_RS24100 PF02872 5'-nucleotidase, C-terminal domain Eco28_RS24105 PF01638 HxlR-like helix-turn-helix Eco28_RS24110 PF05368 NmrA-like family Eco28_RS24115 PF00892 EamA-like transporter family Eco28_RS24120 PF01814 Hemerythrin HHE cation binding domain Eco28_RS24120 PF04405 Domain of Unknown function (DUF542) Eco28_RS24125 PF00324 Amino acid permease Eco28_RS24130 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase Eco28_RS24130 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Eco28_RS24140 PF08525 Opacity-associated protein A N-terminal motif Eco28_RS24140 PF04225 Opacity-associated protein A LysM-like domain Eco28_RS24145 PF17938 Tetracyclin repressor-like, C-terminal domain Eco28_RS24150 PF07282 Putative transposase DNA-binding domain Eco28_RS24150 PF12323 Helix-turn-helix domain Eco28_RS24150 PF01385 Probable transposase Eco28_RS24155 PF01797 Transposase IS200 like Eco28_RS24165 PF10887 Protein of unknown function (DUF2686) Eco28_RS24170 PF01281 Ribosomal protein L9, N-terminal domain Eco28_RS24170 PF03948 Ribosomal protein L9, C-terminal domain Eco28_RS24175 PF01084 Ribosomal protein S18 Eco28_RS24180 PF00436 Single-strand binding protein family Eco28_RS24185 PF01250 Ribosomal protein S6 Eco28_RS24190 PF07338 Protein of unknown function (DUF1471) Eco28_RS24195 PF00596 Class II Aldolase and Adducin N-terminal domain Eco28_RS24200 PF01261 Xylose isomerase-like TIM barrel Eco28_RS24205 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Eco28_RS24210 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS24215 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS24220 PF03611 PTS system sugar-specific permease component Eco28_RS24230 PF08220 DeoR-like helix-turn-helix domain Eco28_RS24230 PF00455 DeoR C terminal sensor domain Eco28_RS24235 PF00326 Prolyl oligopeptidase family Eco28_RS24240 PF07338 Protein of unknown function (DUF1471) Eco28_RS24245 PF07338 Protein of unknown function (DUF1471) Eco28_RS24250 PF02770 Acyl-CoA dehydrogenase, middle domain Eco28_RS24250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Eco28_RS24250 PF18158 Adaptive response protein AidB N-terminal domain Eco28_RS24255 PF03738 Glutathionylspermidine synthase preATP-grasp Eco28_RS24260 PF06693 Protein of unknown function (DUF1190) Eco28_RS24265 PF03994 Domain of Unknown Function (DUF350) Eco28_RS24270 PF10679 Protein of unknown function (DUF2491) Eco28_RS24275 PF04012 PspA/IM30 family Eco28_RS24280 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) Eco28_RS24290 PF00588 SpoU rRNA Methylase family Eco28_RS24290 PF08032 RNA 2'-O ribose methyltransferase substrate binding Eco28_RS24295 PF00575 S1 RNA binding domain Eco28_RS24295 PF00773 RNB domain Eco28_RS24295 PF08206 Ribonuclease B OB domain Eco28_RS24295 PF08461 Ribonuclease R winged-helix domain Eco28_RS24295 PF17876 Cold shock domain Eco28_RS24300 PF02082 Transcriptional regulator Eco28_RS24305 PF00709 Adenylosuccinate synthetase Eco28_RS24310 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) Eco28_RS24315 PF01145 SPFH domain / Band 7 family Eco28_RS24320 PF12221 Bacterial membrane protein N terminal Eco28_RS24320 PF01145 SPFH domain / Band 7 family Eco28_RS24325 PF01926 50S ribosome-binding GTPase Eco28_RS24325 PF16360 GTP-binding GTPase Middle Region Eco28_RS24325 PF13167 GTP-binding GTPase N-terminal Eco28_RS24330 PF17209 Hfq protein Eco28_RS24340 PF01119 DNA mismatch repair protein, C-terminal domain Eco28_RS24340 PF08676 MutL C terminal dimerisation domain Eco28_RS24345 PF01520 N-acetylmuramoyl-L-alanine amidase Eco28_RS24350 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Eco28_RS24355 PF03853 YjeF-related protein N-terminus Eco28_RS24355 PF01256 Carbohydrate kinase Eco28_RS24360 PF08331 Domain of unknown function (DUF1730) Eco28_RS24380 PF00929 Exonuclease Eco28_RS24385 PF03193 RsgA GTPase Eco28_RS24390 PF02666 Phosphatidylserine decarboxylase Eco28_RS24395 PF00924 Mechanosensitive ion channel Eco28_RS24395 PF12794 Mechanosensitive ion channel inner membrane domain 1 Eco28_RS24395 PF12795 Mechanosensitive ion channel porin domain Eco28_RS24400 PF13520 Amino acid permease Eco28_RS24405 PF00152 tRNA synthetases class II (D, K and N) Eco28_RS24410 PF00890 FAD binding domain Eco28_RS24410 PF02910 Fumarate reductase flavoprotein C-term Eco28_RS24415 PF13183 4Fe-4S dicluster domain Eco28_RS24415 PF13085 2Fe-2S iron-sulfur cluster binding domain Eco28_RS24420 PF02300 Fumarate reductase subunit C Eco28_RS24425 PF02313 Fumarate reductase subunit D Eco28_RS24430 PF00144 Beta-lactamase Eco28_RS24435 PF08212 Lipocalin-like domain Eco28_RS24440 PF00893 Small Multidrug Resistance protein Eco28_RS24445 PF08085 Entericidin EcnA/B family Eco28_RS24450 PF08085 Entericidin EcnA/B family Eco28_RS24455 PF01132 Elongation factor P (EF-P) OB domain Eco28_RS24455 PF08207 Elongation factor P (EF-P) KOW-like domain Eco28_RS24455 PF09285 Elongation factor P, C-terminal Eco28_RS24460 PF04055 Radical SAM superfamily Eco28_RS24465 PF15922 YjeJ-like Eco28_RS24470 PF13698 Domain of unknown function (DUF4156) Eco28_RS24475 PF00118 TCP-1/cpn60 chaperonin family Eco28_RS24480 PF00166 Chaperonin 10 Kd subunit Eco28_RS24485 PF13520 Amino acid permease Eco28_RS24490 PF04186 FxsA cytoplasmic membrane protein Eco28_RS24495 PF00206 Lyase Eco28_RS24495 PF10415 Fumarase C C-terminus Eco28_RS24500 PF03605 Anaerobic c4-dicarboxylate membrane transporter Eco28_RS24505 PF03091 CutA1 divalent ion tolerance protein Eco28_RS24510 PF11412 Disulphide bond corrector protein DsbC Eco28_RS24510 PF02683 Cytochrome C biogenesis protein transmembrane region Eco28_RS24525 PF00589 Phage integrase family Eco28_RS24525 PF13356 Arm DNA-binding domain Eco28_RS24525 PF14659 Phage integrase, N-terminal SAM-like domain Eco28_RS24530 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS24530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Eco28_RS24535 PF16874 Glycosyl hydrolase family 36 C-terminal domain Eco28_RS24535 PF16875 Glycosyl hydrolase family 36 N-terminal domain Eco28_RS24540 PF01306 LacY proton/sugar symporter Eco28_RS24545 PF08244 Glycosyl hydrolases family 32 C terminal Eco28_RS24545 PF00251 Glycosyl hydrolases family 32 N-terminal domain Eco28_RS24580 PF01527 Transposase Eco28_RS24585 PF00665 Integrase core domain Eco28_RS24585 PF01527 Transposase Eco28_RS24585 PF13276 HTH-like domain Eco28_RS24590 PF01609 Transposase DDE domain Eco28_RS24590 PF05598 Transposase domain (DUF772) Eco28_RS24595 PF03895 YadA-like membrane anchor domain Eco28_RS24595 PF05662 Coiled stalk of trimeric autotransporter adhesin Eco28_RS24595 PF05658 Head domain of trimeric autotransporter adhesin Eco28_RS24635 PF05321 Haemolysin expression modulating protein Eco28_RS24655 PF13148 Protein of unknown function (DUF3987) Eco28_RS24665 PF13018 Extended Signal Peptide of Type V secretion system Eco28_RS24665 PF03797 Autotransporter beta-domain Eco28_RS24665 PF16168 Adhesin of bacterial autotransporter system, probable stalk Eco28_RS24675 PF06067 Domain of unknown function (DUF932) Eco28_RS24680 PF03230 Antirestriction protein Eco28_RS24685 PF04002 RadC-like JAB domain Eco28_RS24690 PF06174 Protein of unknown function (DUF987) Eco28_RS24700 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A Eco28_RS24705 PF06755 CbtA_toxin of type IV toxin-antitoxin system Eco28_RS24725 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Eco28_RS24735 PF13356 Arm DNA-binding domain Eco28_RS24735 PF00589 Phage integrase family Eco28_RS24745 PF13087 AAA domain Eco28_RS24745 PF13091 PLD-like domain Eco28_RS24750 PF00884 Sulfatase Eco28_RS24755 PF13505 Outer membrane protein beta-barrel domain Eco28_RS24765 PF03628 PapG chaperone-binding domain Eco28_RS24765 PF03627 PapG carbohydrate binding domain Eco28_RS24770 PF00419 Fimbrial protein Eco28_RS24775 PF00419 Fimbrial protein Eco28_RS24780 PF00419 Fimbrial protein Eco28_RS24785 PF14855 Pilus-assembly fibrillin subunit, chaperone Eco28_RS24790 PF02753 Pili assembly chaperone PapD, C-terminal domain Eco28_RS24790 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain Eco28_RS24795 PF01527 Transposase Eco28_RS24795 PF00665 Integrase core domain Eco28_RS24795 PF13276 HTH-like domain Eco28_RS24800 PF05717 IS66 Orf2 like protein Eco28_RS24805 PF03050 Transposase IS66 family Eco28_RS24805 PF13005 zinc-finger binding domain of transposase IS66 Eco28_RS24805 PF13817 IS66 C-terminal element Eco28_RS24805 PF13007 Transposase C of IS166 homeodomain Eco28_RS24810 PF13954 PapC N-terminal domain Eco28_RS24810 PF13953 PapC C-terminal domain Eco28_RS24810 PF00577 Outer membrane usher protein Eco28_RS24820 PF00419 Fimbrial protein Eco28_RS24825 PF01636 Phosphotransferase enzyme family Eco28_RS24830 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Eco28_RS24840 PF01636 Phosphotransferase enzyme family Eco28_RS24845 PF01526 Tn3 transposase DDE domain Eco28_RS24845 PF13700 Domain of unknown function (DUF4158) Eco28_RS24850 PF02796 Helix-turn-helix domain of resolvase Eco28_RS24850 PF00239 Resolvase, N terminal domain Eco28_RS24870 PF03466 LysR substrate binding domain Eco28_RS24870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS24875 PF03616 Sodium/glutamate symporter Eco28_RS24895 PF02909 Tetracyclin repressor-like, C-terminal domain Eco28_RS24895 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS24900 PF07690 Major Facilitator Superfamily Eco28_RS24905 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS24910 PF12833 Helix-turn-helix domain Eco28_RS24920 PF00419 Fimbrial protein Eco28_RS24925 PF03333 Adhesin biosynthesis transcription regulatory protein Eco28_RS24950 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Eco28_RS24950 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Eco28_RS24950 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Eco28_RS24950 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Eco28_RS24955 PF00809 Pterin binding enzyme Eco28_RS24970 PF12833 Helix-turn-helix domain Eco28_RS24975 PF02056 Family 4 glycosyl hydrolase Eco28_RS24975 PF11975 Family 4 glycosyl hydrolase C-terminal domain Eco28_RS24985 PF09997 Predicted membrane protein (DUF2238) Eco28_RS24990 PF05681 Fumarate hydratase (Fumerase) Eco28_RS24990 PF05683 Fumarase C-terminus Eco28_RS24995 PF03605 Anaerobic c4-dicarboxylate membrane transporter Eco28_RS25010 PF00072 Response regulator receiver domain Eco28_RS25015 PF00989 PAS fold Eco28_RS25015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS25015 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Eco28_RS25015 PF17203 Single cache domain 3 Eco28_RS25020 PF06902 Divergent 4Fe-4S mono-cluster Eco28_RS25025 PF14542 GCN5-related N-acetyl-transferase Eco28_RS25035 PF11080 Endoribonuclease GhoS Eco28_RS25040 PF10753 Toxin GhoT_OrtT Eco28_RS25045 PF00152 tRNA synthetases class II (D, K and N) Eco28_RS25045 PF01336 OB-fold nucleic acid binding domain Eco28_RS25050 PF00854 POT family Eco28_RS25055 PF01276 Orn/Lys/Arg decarboxylase, major domain Eco28_RS25055 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Eco28_RS25055 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Eco28_RS25060 PF13520 Amino acid permease Eco28_RS25070 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS25070 PF18500 CadC C-terminal domain 1 Eco28_RS25095 PF06755 CbtA_toxin of type IV toxin-antitoxin system Eco28_RS25100 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A Eco28_RS25110 PF06174 Protein of unknown function (DUF987) Eco28_RS25115 PF04002 RadC-like JAB domain Eco28_RS25120 PF03230 Antirestriction protein Eco28_RS25125 PF06067 Domain of unknown function (DUF932) Eco28_RS25130 PF06006 Bacterial protein of unknown function (DUF905) Eco28_RS25140 PF01926 50S ribosome-binding GTPase Eco28_RS25175 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS25175 PF00593 TonB dependent receptor Eco28_RS25265 PF12833 Helix-turn-helix domain Eco28_RS25270 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Eco28_RS25270 PF01276 Orn/Lys/Arg decarboxylase, major domain Eco28_RS25270 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain Eco28_RS25275 PF12833 Helix-turn-helix domain Eco28_RS25285 PF13520 Amino acid permease Eco28_RS25290 PF00884 Sulfatase Eco28_RS25290 PF08019 Phosphoethanolamine transferase EptA/EptB Eco28_RS25295 PF00072 Response regulator receiver domain Eco28_RS25295 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS25300 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS25300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS25310 PF08946 Osmosensory transporter coiled coil Eco28_RS25310 PF00083 Sugar (and other) transporter Eco28_RS25315 PF13990 YjcZ-like protein Eco28_RS25320 PF00350 Dynamin family Eco28_RS25330 PF08274 PhnA Zinc-Ribbon Eco28_RS25330 PF03831 PhnA domain Eco28_RS25335 PF06983 3-demethylubiquinone-9 3-methyltransferase Eco28_RS25350 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS25355 PF07702 UTRA domain Eco28_RS25355 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS25360 PF06754 Phosphonate metabolism protein PhnG Eco28_RS25365 PF05845 Bacterial phosphonate metabolism protein (PhnH) Eco28_RS25370 PF05861 Bacterial phosphonate metabolism protein (PhnI) Eco28_RS25375 PF06007 Phosphonate metabolism protein PhnJ Eco28_RS25380 PF00005 ABC transporter Eco28_RS25385 PF00005 ABC transporter Eco28_RS25390 PF07969 Amidohydrolase family Eco28_RS25400 PF00583 Acetyltransferase (GNAT) family Eco28_RS25405 PF12706 Beta-lactamase superfamily domain Eco28_RS25415 PF02502 Ribose/Galactose Isomerase Eco28_RS25420 PF00753 Metallo-beta-lactamase superfamily Eco28_RS25420 PF14864 Alkyl sulfatase C-terminal Eco28_RS25420 PF14863 Alkyl sulfatase dimerisation Eco28_RS25425 PF17090 Uncharacterised protein family Eco28_RS25430 PF00529 HlyD membrane-fusion protein of T1SS Eco28_RS25430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Eco28_RS25435 PF04632 Fusaric acid resistance protein family Eco28_RS25440 PF02321 Outer membrane efflux protein Eco28_RS25450 PF08238 Sel1 repeat Eco28_RS25455 PF00375 Sodium:dicarboxylate symporter family Eco28_RS25470 PF03918 Cytochrome C biogenesis protein Eco28_RS25475 PF01578 Cytochrome C assembly protein Eco28_RS25475 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Eco28_RS25480 PF03916 Polysulphide reductase, NrfD Eco28_RS25485 PF00037 4Fe-4S binding domain Eco28_RS25485 PF13247 4Fe-4S dicluster domain Eco28_RS25490 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) Eco28_RS25490 PF13435 Cytochrome c554 and c-prime Eco28_RS25495 PF02335 Cytochrome c552 Eco28_RS25505 PF16177 Acetyl-coenzyme A synthetase N-terminus Eco28_RS25505 PF13193 AMP-binding enzyme C-terminal domain Eco28_RS25505 PF00501 AMP-binding enzyme Eco28_RS25510 PF04341 Protein of unknown function, DUF485 Eco28_RS25515 PF00474 Sodium:solute symporter family Eco28_RS25520 PF00805 Pentapeptide repeats (8 copies) Eco28_RS25525 PF00999 Sodium/hydrogen exchanger family Eco28_RS25530 PF00860 Permease family Eco28_RS25550 PF00376 MerR family regulatory protein Eco28_RS25550 PF09278 MerR, DNA binding Eco28_RS25555 PF12833 Helix-turn-helix domain Eco28_RS25560 PF12792 CSS motif domain associated with EAL Eco28_RS25560 PF00563 EAL domain Eco28_RS25570 PF15940 Family of unknown function Eco28_RS25575 PF00436 Single-strand binding protein family Eco28_RS25580 PF17760 UvrA interaction domain Eco28_RS25580 PF17755 UvrA DNA-binding domain Eco28_RS25580 PF00005 ABC transporter Eco28_RS25585 PF04237 YjbR Eco28_RS25590 PF01894 Uncharacterised protein family UPF0047 Eco28_RS25595 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) Eco28_RS25605 PF00155 Aminotransferase class I and II Eco28_RS25610 PF00842 Alanine racemase, C-terminal domain Eco28_RS25610 PF01168 Alanine racemase, N-terminal domain Eco28_RS25615 PF00772 DnaB-like helicase N terminal domain Eco28_RS25615 PF03796 DnaB-like helicase C terminal domain Eco28_RS25620 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS25620 PF00107 Zinc-binding dehydrogenase Eco28_RS25625 PF09583 Phage shock protein G (Phageshock_PspG) Eco28_RS25630 PF01207 Dihydrouridine synthase (Dus) Eco28_RS25635 PF01797 Transposase IS200 like Eco28_RS25645 PF01797 Transposase IS200 like Eco28_RS25655 PF10897 Protein of unknown function (DUF2713) Eco28_RS25660 PF01475 Ferric uptake regulator family Eco28_RS25665 PF05532 CsbD-like Eco28_RS25670 PF01554 MatE Eco28_RS25675 PF01726 LexA DNA binding domain Eco28_RS25675 PF00717 Peptidase S24-like Eco28_RS25680 PF01219 Prokaryotic diacylglycerol kinase Eco28_RS25685 PF01553 Acyltransferase Eco28_RS25690 PF01040 UbiA prenyltransferase family Eco28_RS25695 PF04345 Chorismate lyase Eco28_RS25705 PF13981 SopA-like central domain Eco28_RS25705 PF13599 Pentapeptide repeats (9 copies) Eco28_RS25710 PF07148 Maltose operon periplasmic protein precursor (MalM) Eco28_RS25715 PF02264 LamB porin Eco28_RS25720 PF00005 ABC transporter Eco28_RS25720 PF17912 MalK OB fold domain Eco28_RS25730 PF01547 Bacterial extracellular solute-binding protein Eco28_RS25735 PF14785 Maltose transport system permease protein MalF P2 domain Eco28_RS25735 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS25740 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS25750 PF00083 Sugar (and other) transporter Eco28_RS25755 PF06146 Phosphate-starvation-inducible E Eco28_RS25760 PF17089 Uncharacterised protein family Eco28_RS25765 PF06082 Exopolysaccharide biosynthesis protein YbjH Eco28_RS25770 PF06251 Capsule biosynthesis GfcC Eco28_RS25775 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF Eco28_RS25780 PF11106 Exopolysaccharide production protein YjbE Eco28_RS25790 PF00342 Phosphoglucose isomerase Eco28_RS25805 PF00696 Amino acid kinase family Eco28_RS25805 PF01842 ACT domain Eco28_RS25810 PF06414 Zeta toxin Eco28_RS25815 PF10127 RNA repair pathway DNA polymerase beta family Eco28_RS25840 PF00455 DeoR C terminal sensor domain Eco28_RS25840 PF08220 DeoR-like helix-turn-helix domain Eco28_RS25845 PF11656 YjbD family (DUF3811) Eco28_RS25850 PF00849 RNA pseudouridylate synthase Eco28_RS25850 PF01479 S4 domain Eco28_RS25860 PF13936 Helix-turn-helix domain Eco28_RS25860 PF04198 Putative sugar-binding domain Eco28_RS25865 PF00106 short chain dehydrogenase Eco28_RS25870 PF03610 PTS system fructose IIA component Eco28_RS25875 PF03830 PTS system sorbose subfamily IIB component Eco28_RS25880 PF03609 PTS system sorbose-specific iic component Eco28_RS25885 PF03613 PTS system mannose/fructose/sorbose family IID component Eco28_RS25890 PF00107 Zinc-binding dehydrogenase Eco28_RS25890 PF08240 Alcohol dehydrogenase GroES-like domain Eco28_RS25895 PF03575 Peptidase family S51 Eco28_RS25900 PF02690 Na+/Pi-cotransporter Eco28_RS25905 PF00809 Pterin binding enzyme Eco28_RS25905 PF02965 Vitamin B12 dependent methionine synthase, activation domain Eco28_RS25905 PF02607 B12 binding domain Eco28_RS25905 PF02310 B12 binding domain Eco28_RS25905 PF02574 Homocysteine S-methyltransferase Eco28_RS25910 PF09339 IclR helix-turn-helix domain Eco28_RS25910 PF01614 Bacterial transcriptional regulator Eco28_RS25915 PF07906 ShET2 enterotoxin, N-terminal region Eco28_RS25920 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) Eco28_RS25925 PF00463 Isocitrate lyase family Eco28_RS25930 PF01274 Malate synthase Eco28_RS25935 PF04204 Homoserine O-succinyltransferase Eco28_RS25940 PF13673 Acetyltransferase (GNAT) domain Eco28_RS25975 PF02142 MGS-like domain Eco28_RS25975 PF01808 AICARFT/IMPCHase bienzyme Eco28_RS25980 PF02844 Phosphoribosylglycinamide synthetase, N domain Eco28_RS25980 PF02843 Phosphoribosylglycinamide synthetase, C domain Eco28_RS25980 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Eco28_RS25985 PF00158 Sigma-54 interaction domain Eco28_RS25985 PF00072 Response regulator receiver domain Eco28_RS25985 PF02954 Bacterial regulatory protein, Fis family Eco28_RS25990 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS25990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS26000 PF13801 Heavy-metal resistance Eco28_RS26005 PF07356 Protein of unknown function (DUF1481) Eco28_RS26010 PF00216 Bacterial DNA-binding protein Eco28_RS26015 PF04222 Protein of unknown function (DUF416) Eco28_RS26020 PF04493 Endonuclease V Eco28_RS26025 PF01208 Uroporphyrinogen decarboxylase (URO-D) Eco28_RS26030 PF00293 NUDIX domain Eco28_RS26030 PF09297 NADH pyrophosphatase zinc ribbon domain Eco28_RS26035 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Eco28_RS26040 PF01964 Radical SAM ThiC family Eco28_RS26040 PF13667 ThiC-associated domain Eco28_RS26045 PF02581 Thiamine monophosphate synthase Eco28_RS26050 PF00899 ThiF family Eco28_RS26055 PF02597 ThiS family Eco28_RS26060 PF05690 Thiazole biosynthesis protein ThiG Eco28_RS26065 PF04055 Radical SAM superfamily Eco28_RS26065 PF06968 Biotin and Thiamin Synthesis associated domain Eco28_RS26075 PF00623 RNA polymerase Rpb1, domain 2 Eco28_RS26075 PF04983 RNA polymerase Rpb1, domain 3 Eco28_RS26075 PF05000 RNA polymerase Rpb1, domain 4 Eco28_RS26075 PF04998 RNA polymerase Rpb1, domain 5 Eco28_RS26075 PF04997 RNA polymerase Rpb1, domain 1 Eco28_RS26080 PF00562 RNA polymerase Rpb2, domain 6 Eco28_RS26080 PF10385 RNA polymerase beta subunit external 1 domain Eco28_RS26080 PF04565 RNA polymerase Rpb2, domain 3 Eco28_RS26080 PF04560 RNA polymerase Rpb2, domain 7 Eco28_RS26080 PF04563 RNA polymerase beta subunit Eco28_RS26080 PF04561 RNA polymerase Rpb2, domain 2 Eco28_RS26085 PF00542 Ribosomal protein L7/L12 C-terminal domain Eco28_RS26085 PF16320 Ribosomal protein L7/L12 dimerisation domain Eco28_RS26090 PF00466 Ribosomal protein L10 Eco28_RS26100 PF00687 Ribosomal protein L1p/L10e family Eco28_RS26105 PF03946 Ribosomal protein L11, N-terminal domain Eco28_RS26105 PF00298 Ribosomal protein L11, RNA binding domain Eco28_RS26110 PF00467 KOW motif Eco28_RS26110 PF02357 Transcription termination factor nusG Eco28_RS26115 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Eco28_RS26120 PF00009 Elongation factor Tu GTP binding domain Eco28_RS26120 PF03143 Elongation factor Tu C-terminal domain Eco28_RS26120 PF03144 Elongation factor Tu domain 2 Eco28_RS26155 PF00485 Phosphoribulokinase / Uridine kinase family Eco28_RS26160 PF03099 Biotin/lipoate A/B protein ligase family Eco28_RS26160 PF08279 HTH domain Eco28_RS26160 PF02237 Biotin protein ligase C terminal domain Eco28_RS26165 PF01565 FAD binding domain Eco28_RS26165 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Eco28_RS26195 PF01177 Asp/Glu/Hydantoin racemase Eco28_RS26200 PF07715 TonB-dependent Receptor Plug Domain Eco28_RS26200 PF00593 TonB dependent receptor Eco28_RS26205 PF05958 tRNA (Uracil-5-)-methyltransferase Eco28_RS26210 PF07226 Protein of unknown function (DUF1422) Eco28_RS26215 PF00440 Bacterial regulatory proteins, tetR family Eco28_RS26220 PF07690 Major Facilitator Superfamily Eco28_RS26225 PF07687 Peptidase dimerisation domain Eco28_RS26225 PF01546 Peptidase family M20/M25/M40 Eco28_RS26230 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Eco28_RS26230 PF07992 Pyridine nucleotide-disulphide oxidoreductase Eco28_RS26235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS26235 PF03466 LysR substrate binding domain Eco28_RS26240 PF14698 Argininosuccinate lyase C-terminal Eco28_RS26240 PF00206 Lyase Eco28_RS26245 PF00696 Amino acid kinase family Eco28_RS26250 PF02774 Semialdehyde dehydrogenase, dimerisation domain Eco28_RS26250 PF01118 Semialdehyde dehydrogenase, NAD binding domain Eco28_RS26255 PF07687 Peptidase dimerisation domain Eco28_RS26255 PF01546 Peptidase family M20/M25/M40 Eco28_RS26260 PF00311 Phosphoenolpyruvate carboxylase Eco28_RS26265 PF00884 Sulfatase Eco28_RS26270 PF12833 Helix-turn-helix domain Eco28_RS26275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS26280 PF04055 Radical SAM superfamily Eco28_RS26285 PF02901 Pyruvate formate lyase-like Eco28_RS26285 PF01228 Glycine radical Eco28_RS26290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit Eco28_RS26300 PF05524 PEP-utilising enzyme, N-terminal Eco28_RS26300 PF00391 PEP-utilising enzyme, mobile domain Eco28_RS26300 PF02896 PEP-utilising enzyme, TIM barrel domain Eco28_RS26300 PF00381 PTS HPr component phosphorylation site Eco28_RS26300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS26305 PF00923 Transaldolase/Fructose-6-phosphate aldolase Eco28_RS26310 PF00465 Iron-containing alcohol dehydrogenase Eco28_RS26315 PF06940 Domain of unknown function (DUF1287) Eco28_RS26320 PF00892 EamA-like transporter family Eco28_RS26325 PF00141 Peroxidase Eco28_RS26330 PF02219 Methylenetetrahydrofolate reductase Eco28_RS26340 PF03447 Homoserine dehydrogenase, NAD binding domain Eco28_RS26340 PF00742 Homoserine dehydrogenase Eco28_RS26340 PF00696 Amino acid kinase family Eco28_RS26345 PF01053 Cys/Met metabolism PLP-dependent enzyme Eco28_RS26355 PF01340 Met Apo-repressor, MetJ Eco28_RS26360 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family Eco28_RS26365 PF01197 Ribosomal protein L31 Eco28_RS26370 PF18074 Primosomal protein N C-terminal domain Eco28_RS26370 PF00271 Helicase conserved C-terminal domain Eco28_RS26370 PF17764 3′ DNA-binding domain (3′BD) Eco28_RS26370 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Eco28_RS26370 PF00270 DEAD/DEAH box helicase Eco28_RS26375 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS26380 PF05036 Sporulation related domain Eco28_RS26385 PF00227 Proteasome subunit Eco28_RS26390 PF00004 ATPase family associated with various cellular activities (AAA) Eco28_RS26390 PF10431 C-terminal, D2-small domain, of ClpB protein Eco28_RS26390 PF07724 AAA domain (Cdc48 subfamily) Eco28_RS26395 PF01040 UbiA prenyltransferase family Eco28_RS26400 PF03737 Aldolase/RraA Eco28_RS26415 PF06005 Cell division protein ZapB Eco28_RS26420 PF00230 Major intrinsic protein Eco28_RS26425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Eco28_RS26425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Eco28_RS26430 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded Eco28_RS26435 PF00175 Oxidoreductase NAD-binding domain Eco28_RS26435 PF00970 Oxidoreductase FAD-binding domain Eco28_RS26440 PF00582 Universal stress protein family Eco28_RS26445 PF04175 Protein of unknown function (DUF406) Eco28_RS26450 PF05656 Protein of unknown function (DUF805) Eco28_RS26455 PF07305 Protein of unknown function (DUF1454) Eco28_RS26465 PF00121 Triosephosphate isomerase Eco28_RS26470 PF02611 CDP-diacylglycerol pyrophosphatase Eco28_RS26480 PF00365 Phosphofructokinase Eco28_RS26485 PF16916 Dimerisation domain of Zinc Transporter Eco28_RS26485 PF01545 Cation efflux family Eco28_RS26490 PF04606 Ogr/Delta-like zinc finger Eco28_RS26530 PF02796 Helix-turn-helix domain of resolvase Eco28_RS26530 PF00239 Resolvase, N terminal domain Eco28_RS26540 PF13610 DDE domain Eco28_RS26545 PF00196 Bacterial regulatory proteins, luxR family Eco28_RS26560 PF00809 Pterin binding enzyme Eco28_RS26565 PF00893 Small Multidrug Resistance protein Eco28_RS26570 PF13427 Domain of unknown function (DUF4111) Eco28_RS26575 PF00186 Dihydrofolate reductase Eco28_RS26580 PF13495 Phage integrase, N-terminal SAM-like domain Eco28_RS26580 PF00589 Phage integrase family Eco28_RS26585 PF13610 DDE domain Eco28_RS26605 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS26610 PF02413 Caudovirales tail fibre assembly protein, lambda gpK Eco28_RS26615 PF07484 Phage Tail Collar Domain Eco28_RS26710 PF00145 C-5 cytosine-specific DNA methylase Eco28_RS26725 PF05840 Bacteriophage replication gene A protein (GPA) Eco28_RS26770 PF02899 Phage integrase, N-terminal SAM-like domain Eco28_RS26770 PF00589 Phage integrase family Eco28_RS26775 PF07813 LTXXQ motif family protein Eco28_RS26780 PF00486 Transcriptional regulatory protein, C terminal Eco28_RS26780 PF00072 Response regulator receiver domain Eco28_RS26785 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS26785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS26785 PF16527 Two-component sensor protein CpxA, periplasmic domain Eco28_RS26785 PF00672 HAMP domain Eco28_RS26790 PF03473 MOSC domain Eco28_RS26790 PF03475 3-alpha domain Eco28_RS26795 PF03812 2-keto-3-deoxygluconate permease Eco28_RS26805 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Eco28_RS26805 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Eco28_RS26810 PF06379 L-rhamnose-proton symport protein (RhaT) Eco28_RS26815 PF12833 Helix-turn-helix domain Eco28_RS26815 PF02311 AraC-like ligand binding domain Eco28_RS26820 PF12833 Helix-turn-helix domain Eco28_RS26820 PF02311 AraC-like ligand binding domain Eco28_RS26825 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Eco28_RS26825 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Eco28_RS26830 PF06134 L-rhamnose isomerase (RhaA) Eco28_RS26835 PF00596 Class II Aldolase and Adducin N-terminal domain Eco28_RS26840 PF05336 L-rhamnose mutarotase Eco28_RS26850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS26860 PF05343 M42 glutamyl aminopeptidase Eco28_RS26865 PF08279 HTH domain Eco28_RS26865 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Eco28_RS26870 PF12889 Protein of unknown function (DUF3829) Eco28_RS26875 PF02634 FdhD/NarQ family Eco28_RS26885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS26885 PF00384 Molybdopterin oxidoreductase Eco28_RS26885 PF01568 Molydopterin dinucleotide binding domain Eco28_RS26890 PF01568 Molydopterin dinucleotide binding domain Eco28_RS26890 PF00384 Molybdopterin oxidoreductase Eco28_RS26890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS26895 PF09163 Formate dehydrogenase N, transmembrane Eco28_RS26895 PF13247 4Fe-4S dicluster domain Eco28_RS26900 PF01292 Prokaryotic cytochrome b561 Eco28_RS26905 PF04216 Protein involved in formate dehydrogenase formation Eco28_RS26915 PF01402 Ribbon-helix-helix protein, copG family Eco28_RS26935 PF00583 Acetyltransferase (GNAT) family Eco28_RS26935 PF09500 Putative thioesterase (yiiD_Cterm) Eco28_RS26940 PF02580 D-Tyr-tRNA(Tyr) deacylase Eco28_RS26945 PF03631 Virulence factor BrkB Eco28_RS26950 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS26955 PF08220 DeoR-like helix-turn-helix domain Eco28_RS26955 PF00455 DeoR C terminal sensor domain Eco28_RS26960 PF00294 pfkB family carbohydrate kinase Eco28_RS26965 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Eco28_RS26965 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Eco28_RS26970 PF01791 DeoC/LacD family aldolase Eco28_RS26980 PF01263 Aldose 1-epimerase Eco28_RS26990 PF01055 Glycosyl hydrolases family 31 Eco28_RS27005 PF06178 Oligogalacturonate-specific porin protein (KdgM) Eco28_RS27010 PF07690 Major Facilitator Superfamily Eco28_RS27015 PF01261 Xylose isomerase-like TIM barrel Eco28_RS27020 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS27020 PF07702 UTRA domain Eco28_RS27025 PF03144 Elongation factor Tu domain 2 Eco28_RS27025 PF00679 Elongation factor G C-terminus Eco28_RS27025 PF00009 Elongation factor Tu GTP binding domain Eco28_RS27035 PF00120 Glutamine synthetase, catalytic domain Eco28_RS27035 PF03951 Glutamine synthetase, beta-Grasp domain Eco28_RS27040 PF00989 PAS fold Eco28_RS27040 PF00512 His Kinase A (phospho-acceptor) domain Eco28_RS27040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Eco28_RS27045 PF00158 Sigma-54 interaction domain Eco28_RS27045 PF00072 Response regulator receiver domain Eco28_RS27045 PF02954 Bacterial regulatory protein, Fis family Eco28_RS27055 PF06969 HemN C-terminal domain Eco28_RS27055 PF04055 Radical SAM superfamily Eco28_RS27060 PF04220 Der GTPase activator (YihI) Eco28_RS27065 PF01926 50S ribosome-binding GTPase Eco28_RS27070 PF00476 DNA polymerase family A Eco28_RS27070 PF01612 3'-5' exonuclease Eco28_RS27070 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Eco28_RS27070 PF01367 5'-3' exonuclease, C-terminal SAM fold Eco28_RS27080 PF01553 Acyltransferase Eco28_RS27085 PF06097 Bacterial protein of unknown function (DUF945) Eco28_RS27090 PF01323 DSBA-like thioredoxin domain Eco28_RS27095 PF01636 Phosphotransferase enzyme family Eco28_RS27100 PF06288 Protein of unknown function (DUF1040) Eco28_RS27105 PF12804 MobA-like NTP transferase domain Eco28_RS27110 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Eco28_RS27140 PF12724 Flavodoxin domain Eco28_RS27145 PF02386 Cation transport protein Eco28_RS27150 PF01205 Uncharacterized protein family UPF0029 Eco28_RS27150 PF09186 Domain of unknown function (DUF1949) Eco28_RS27155 PF00557 Metallopeptidase family M24 Eco28_RS27160 PF00378 Enoyl-CoA hydratase/isomerase Eco28_RS27160 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Eco28_RS27160 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Eco28_RS27165 PF02803 Thiolase, C-terminal domain Eco28_RS27165 PF00108 Thiolase, N-terminal domain Eco28_RS27170 PF00970 Oxidoreductase FAD-binding domain Eco28_RS27170 PF00175 Oxidoreductase NAD-binding domain Eco28_RS27175 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Eco28_RS27180 PF02357 Transcription termination factor nusG Eco28_RS27185 PF01026 TatD related DNase Eco28_RS27190 PF00902 Sec-independent protein translocase protein (TatC) Eco28_RS27200 PF02416 mttA/Hcf106 family Eco28_RS27205 PF03109 ABC1 family Eco28_RS27210 PF02036 SCP-2 sterol transfer family Eco28_RS27215 PF01209 ubiE/COQ5 methyltransferase family Eco28_RS27220 PF02646 RmuC family Eco28_RS27225 PF01048 Phosphorylase superfamily Eco28_RS27230 PF01738 Dienelactone hydrolase family Eco28_RS27235 PF08267 Cobalamin-independent synthase, N-terminal domain Eco28_RS27235 PF01717 Cobalamin-independent synthase, Catalytic domain Eco28_RS27240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS27240 PF03466 LysR substrate binding domain Eco28_RS27245 PF00892 EamA-like transporter family Eco28_RS27255 PF12146 Serine aminopeptidase, S33 Eco28_RS27260 PF01810 LysE type translocator Eco28_RS27265 PF01810 LysE type translocator Eco28_RS27270 PF09382 RQC domain Eco28_RS27270 PF00570 HRDC domain Eco28_RS27270 PF16124 RecQ zinc-binding Eco28_RS27270 PF00270 DEAD/DEAH box helicase Eco28_RS27270 PF00271 Helicase conserved C-terminal domain Eco28_RS27275 PF02253 Phospholipase A1 Eco28_RS27280 PF03061 Thioesterase superfamily Eco28_RS27285 PF00892 EamA-like transporter family Eco28_RS27295 PF10947 Protein of unknown function (DUF2628) Eco28_RS27300 PF01544 CorA-like Mg2+ transporter protein Eco28_RS27315 PF01544 CorA-like Mg2+ transporter protein Eco28_RS27320 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase Eco28_RS27325 PF00580 UvrD/REP helicase N-terminal domain Eco28_RS27325 PF13361 UvrD-like helicase C-terminal domain Eco28_RS27330 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS27335 PF00589 Phage integrase family Eco28_RS27335 PF02899 Phage integrase, N-terminal SAM-like domain Eco28_RS27340 PF04340 Protein of unknown function, DUF484 Eco28_RS27345 PF01678 Diaminopimelate epimerase Eco28_RS27350 PF13627 Prokaryotic lipoprotein-attachment site Eco28_RS27355 PF01491 Frataxin-like domain Eco28_RS27360 PF12633 Adenylate cyclase NT domain Eco28_RS27360 PF01295 Adenylate cyclase, class-I Eco28_RS27370 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Eco28_RS27370 PF03900 Porphobilinogen deaminase, C-terminal domain Eco28_RS27375 PF02602 Uroporphyrinogen-III synthase HemD Eco28_RS27380 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase Eco28_RS27385 PF07219 HemY protein N-terminus Eco28_RS27385 PF07719 Tetratricopeptide repeat Eco28_RS27390 PF00884 Sulfatase Eco28_RS27395 PF13186 Iron-sulfur cluster-binding domain Eco28_RS27395 PF04055 Radical SAM superfamily Eco28_RS27420 PF00324 Amino acid permease Eco28_RS27425 PF03808 Glycosyl transferase WecB/TagA/CpsF family Eco28_RS27430 PF06899 WzyE protein, O-antigen assembly polymerase Eco28_RS27435 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 Eco28_RS27440 PF01943 Polysaccharide biosynthesis protein Eco28_RS27445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Eco28_RS27460 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Eco28_RS27460 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Eco28_RS27460 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Eco28_RS27465 PF02350 UDP-N-acetylglucosamine 2-epimerase Eco28_RS27470 PF02706 Chain length determinant protein Eco28_RS27475 PF00953 Glycosyl transferase family 4 Eco28_RS27485 PF07497 Rho termination factor, RNA-binding domain Eco28_RS27485 PF07498 Rho termination factor, N-terminal domain Eco28_RS27485 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Eco28_RS27495 PF00085 Thioredoxin Eco28_RS27500 PF00271 Helicase conserved C-terminal domain Eco28_RS27500 PF00270 DEAD/DEAH box helicase Eco28_RS27510 PF02541 Ppx/GppA phosphatase family Eco28_RS27515 PF00580 UvrD/REP helicase N-terminal domain Eco28_RS27515 PF13361 UvrD-like helicase C-terminal domain Eco28_RS27520 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Eco28_RS27530 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Eco28_RS27530 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Eco28_RS27535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS27535 PF03466 LysR substrate binding domain Eco28_RS27540 PF00585 C-terminal regulatory domain of Threonine dehydratase Eco28_RS27540 PF00291 Pyridoxal-phosphate dependent enzyme Eco28_RS27545 PF00920 Dehydratase family Eco28_RS27550 PF01063 Amino-transferase class IV Eco28_RS27560 PF00205 Thiamine pyrophosphate enzyme, central domain Eco28_RS27560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Eco28_RS27560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Eco28_RS27565 PF08046 IlvGEDA operon leader peptide Eco28_RS27570 PF13335 Magnesium chelatase, subunit ChlI C-terminal Eco28_RS27570 PF01078 Magnesium chelatase, subunit ChlI Eco28_RS27575 PF04219 Protein of unknown function, DUF Eco28_RS27580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS27580 PF03466 LysR substrate binding domain Eco28_RS27615 PF07729 FCD domain Eco28_RS27615 PF00392 Bacterial regulatory proteins, gntR family Eco28_RS27620 PF07690 Major Facilitator Superfamily Eco28_RS27625 PF00356 Bacterial regulatory proteins, lacI family Eco28_RS27630 PF00294 pfkB family carbohydrate kinase Eco28_RS27635 PF13407 Periplasmic binding protein domain Eco28_RS27640 PF02653 Branched-chain amino acid transport system / permease component Eco28_RS27645 PF00005 ABC transporter Eco28_RS27650 PF05025 RbsD / FucU transport protein family Eco28_RS27655 PF02705 K+ potassium transporter Eco28_RS27660 PF12592 Protein of unknown function (DUF3763) Eco28_RS27660 PF07728 AAA domain (dynein-related subfamily) Eco28_RS27660 PF17868 AAA lid domain Eco28_RS27665 PF05762 VWA domain containing CoxE-like protein Eco28_RS27670 PF03590 Aspartate-ammonia ligase Eco28_RS27675 PF01037 Lrp/AsnC ligand binding domain Eco28_RS27680 PF00258 Flavodoxin Eco28_RS27685 PF01134 Glucose inhibited division protein A Eco28_RS27685 PF13932 GidA associated domain Eco28_RS27690 PF02527 rRNA small subunit methyltransferase G Eco28_RS27695 PF03899 ATP synthase I chain Eco28_RS27700 PF00119 ATP synthase A chain Eco28_RS27705 PF00137 ATP synthase subunit C Eco28_RS27710 PF00430 ATP synthase B/B' CF(0) Eco28_RS27715 PF00213 ATP synthase delta (OSCP) subunit Eco28_RS27720 PF02874 ATP synthase alpha/beta family, beta-barrel domain Eco28_RS27720 PF00306 ATP synthase alpha/beta chain, C terminal domain Eco28_RS27720 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Eco28_RS27725 PF00231 ATP synthase Eco28_RS27730 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Eco28_RS27730 PF02874 ATP synthase alpha/beta family, beta-barrel domain Eco28_RS27735 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Eco28_RS27735 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Eco28_RS27740 PF00132 Bacterial transferase hexapeptide (six repeats) Eco28_RS27740 PF14602 Hexapeptide repeat of succinyl-transferase Eco28_RS27740 PF12804 MobA-like NTP transferase domain Eco28_RS27745 PF01380 SIS domain Eco28_RS27755 PF12849 PBP superfamily domain Eco28_RS27760 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS27765 PF00528 Binding-protein-dependent transport system inner membrane component Eco28_RS27770 PF00005 ABC transporter Eco28_RS27775 PF01895 PhoU domain Eco28_RS27810 PF13419 Haloacid dehalogenase-like hydrolase Eco28_RS27815 PF00860 Permease family Eco28_RS27820 PF03358 NADPH-dependent FMN reductase Eco28_RS27830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Eco28_RS27830 PF03466 LysR substrate binding domain Eco28_RS27835 PF07690 Major Facilitator Superfamily Eco28_RS27840 PF03222 Tryptophan/tyrosine permease family Eco28_RS27845 PF01212 Beta-eliminating lyase Eco28_RS27850 PF08053 Tryptophanase operon leader peptide Eco28_RS27860 PF01926 50S ribosome-binding GTPase Eco28_RS27860 PF12631 MnmE helical domain Eco28_RS27860 PF10396 GTP-binding protein TrmE N-terminus Eco28_RS27865 PF02096 60Kd inner membrane protein Eco28_RS27865 PF14849 YidC periplasmic domain Eco28_RS27870 PF01809 Putative membrane protein insertion efficiency factor Eco28_RS27875 PF00825 Ribonuclease P Eco28_RS27880 PF00468 Ribosomal protein L34