Eco28_RS00005 SM00382 ATPases associated with a variety of cellular activities Eco28_RS00005 SM00760 Bacterial dnaA protein helix-turn-helix domain Eco28_RS00010 SM00480 DNA polymerase III beta subunit Eco28_RS00020 SM00387 Histidine kinase-like ATPases Eco28_RS00020 SM00433 TopoisomeraseII Eco28_RS00070 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS00070 SM00866 Eco28_RS00070 Eco28_RS00085 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS00180 SM00421 helix_turn_helix, Lux Regulon Eco28_RS00180 SM00448 cheY-homologous receiver domain Eco28_RS00185 SM00387 Histidine kinase-like ATPases Eco28_RS00215 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS00235 SM00634 Bacterial Ig-like domain (group 1) Eco28_RS00240 SM00634 Bacterial Ig-like domain (group 1) Eco28_RS00255 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS00340 SM00487 DEAD-like helicases superfamily Eco28_RS00340 SM00490 helicase superfamily c-terminal domain Eco28_RS00350 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Eco28_RS00350 SM00954 Region found in RelA / SpoT proteins Eco28_RS00355 SM01409 Eco28_RS00355 Eco28_RS00360 SM00072 Guanylate kinase homologues. Eco28_RS00365 SM00532 Ligase N family Eco28_RS00430 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Eco28_RS00430 SM01232 Eco28_RS00430 Eco28_RS00510 SM00829 Enoylreductase Eco28_RS00540 SM00450 Rhodanese Homology Domain Eco28_RS00560 SM00971 Serine acetyltransferase, N-terminal Eco28_RS00575 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS00575 SM00895 Eco28_RS00575 Eco28_RS00735 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS00755 SM00642 Alpha-amylase domain Eco28_RS00760 SM00047 Lysozyme subfamily 2 Eco28_RS00765 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS00775 SM00382 ATPases associated with a variety of cellular activities Eco28_RS00830 SM00357 Cold shock protein domain Eco28_RS00835 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS00945 SM00382 ATPases associated with a variety of cellular activities Eco28_RS00950 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01030 SM00028 Tetratricopeptide repeats Eco28_RS01035 SM00052 Putative diguanylate phosphodiesterase Eco28_RS01035 SM00267 diguanylate cyclase Eco28_RS01070 SM00052 Putative diguanylate phosphodiesterase Eco28_RS01095 SM00421 helix_turn_helix, Lux Regulon Eco28_RS01105 SM01235 Eco28_RS01105 Eco28_RS01115 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS01120 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS01170 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01210 SM00421 helix_turn_helix, Lux Regulon Eco28_RS01300 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS01300 SM01134 Eco28_RS01300 Eco28_RS01395 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01420 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01425 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01450 SM00825 Beta-ketoacyl synthase Eco28_RS01465 SM00825 Beta-ketoacyl synthase Eco28_RS01520 SM00563 Phosphate acyltransferases Eco28_RS01595 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01595 SM00962 SRP54-type protein, GTPase domain Eco28_RS01595 SM00963 SRP54-type protein, helical bundle domain Eco28_RS01600 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01655 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01660 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01685 SM00382 ATPases associated with a variety of cellular activities Eco28_RS01735 SM00354 helix_turn _helix lactose operon repressor Eco28_RS01750 SM00487 DEAD-like helicases superfamily Eco28_RS01750 SM00490 helicase superfamily c-terminal domain Eco28_RS01765 SM00859 Semialdehyde dehydrogenase, NAD binding domain Eco28_RS01770 SM00642 Alpha-amylase domain Eco28_RS01775 SM00642 Alpha-amylase domain Eco28_RS01830 SM00450 Rhodanese Homology Domain Eco28_RS01840 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS01840 SM01134 Eco28_RS01840 Eco28_RS01870 SM00421 helix_turn_helix, Lux Regulon Eco28_RS01925 SM00899 Eco28_RS01925 Eco28_RS01935 SM00316 Ribosomal protein S1-like RNA-binding domain Eco28_RS01935 SM00732 Likely ribonuclease with RNase H fold. Eco28_RS01950 SM00448 cheY-homologous receiver domain Eco28_RS01950 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS01955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS01955 SM00387 Histidine kinase-like ATPases Eco28_RS01955 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS01980 SM00363 S4 RNA-binding domain Eco28_RS02025 SM00965 Secretin and TonB N terminus short domain Eco28_RS02065 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS02065 SM00866 Eco28_RS02065 Eco28_RS02155 SM00100 Cyclic nucleotide-monophosphate binding domain Eco28_RS02155 SM00419 helix_turn_helix, cAMP Regulatory protein Eco28_RS02185 SM00382 ATPases associated with a variety of cellular activities Eco28_RS02255 SM00838 Elongation factor G C-terminus Eco28_RS02255 SM00889 Elongation factor G, domain IV Eco28_RS02290 SM01403 Eco28_RS02290 Eco28_RS02310 SM01382 Eco28_RS02310 Eco28_RS02310 SM01383 Eco28_RS02310 Eco28_RS02325 SM00322 K homology RNA-binding domain Eco28_RS02345 SM01374 Eco28_RS02345 Eco28_RS02350 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Eco28_RS02415 SM00363 S4 RNA-binding domain Eco28_RS02415 SM01390 Eco28_RS02415 Eco28_RS02420 SM00662 RNA polymerases D Eco28_RS02435 SM00422 helix_turn_helix, mercury resistance Eco28_RS02540 SM00382 ATPases associated with a variety of cellular activities Eco28_RS02555 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS02625 SM00878 Biotin carboxylase C-terminal domain Eco28_RS02640 SM00829 Enoylreductase Eco28_RS02645 SM00052 Putative diguanylate phosphodiesterase Eco28_RS02645 SM00267 diguanylate cyclase Eco28_RS02680 SM00316 Ribosomal protein S1-like RNA-binding domain Eco28_RS02735 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Eco28_RS02740 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Eco28_RS02795 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS02795 SM00895 Eco28_RS02795 Eco28_RS02800 SM01130 Eco28_RS02800 Eco28_RS02850 SM00729 Elongator protein 3, MiaB family, Radical SAM Eco28_RS02855 SM00073 Histidine Phosphotransfer domain Eco28_RS02855 SM00091 PAS domain Eco28_RS02855 SM00387 Histidine kinase-like ATPases Eco28_RS02855 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS02855 SM00448 cheY-homologous receiver domain Eco28_RS02900 SM00382 ATPases associated with a variety of cellular activities Eco28_RS02930 SM00382 ATPases associated with a variety of cellular activities Eco28_RS03005 SM01103 Eco28_RS03005 Eco28_RS03015 SM00382 ATPases associated with a variety of cellular activities Eco28_RS03065 SM00316 Ribosomal protein S1-like RNA-binding domain Eco28_RS03085 SM01387 Eco28_RS03085 Eco28_RS03090 SM00316 Ribosomal protein S1-like RNA-binding domain Eco28_RS03090 SM00322 K homology RNA-binding domain Eco28_RS03095 SM00028 Tetratricopeptide repeats Eco28_RS03105 SM00487 DEAD-like helicases superfamily Eco28_RS03105 SM00490 helicase superfamily c-terminal domain Eco28_RS03140 SM00465 GIY-YIG type nucleases (URI domain) Eco28_RS03155 SM00859 Semialdehyde dehydrogenase, NAD binding domain Eco28_RS03165 SM00749 bacterial OsmY and nodulation domain Eco28_RS03275 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS03275 SM01134 Eco28_RS03275 Eco28_RS03290 SM00858 Eco28_RS03290 Eco28_RS03450 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS03450 SM00895 Eco28_RS03450 Eco28_RS03465 SM00858 Eco28_RS03465 Eco28_RS03515 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS03550 SM01038 Beta galactosidase small chain Eco28_RS03555 SM00354 helix_turn _helix lactose operon repressor Eco28_RS03580 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Eco28_RS03580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Eco28_RS03620 SM00400 zinc finger Eco28_RS03620 SM00493 Eco28_RS03620 Eco28_RS03620 SM00766 DNA primase DnaG DnaB-binding Eco28_RS03665 SM01207 Eco28_RS03665 Eco28_RS03670 SM00905 Dihydroneopterin aldolase Eco28_RS03685 SM00287 Bacterial SH3 domain homologues Eco28_RS03695 SM01118 Eco28_RS03695 Eco28_RS03715 SM00244 prohibitin homologues Eco28_RS03795 SM00387 Histidine kinase-like ATPases Eco28_RS03795 SM00433 TopoisomeraseII Eco28_RS03810 SM00387 Histidine kinase-like ATPases Eco28_RS03810 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS03815 SM00448 cheY-homologous receiver domain Eco28_RS03815 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS03825 SM00871 Bacterial transcription activator, effector binding domain Eco28_RS03835 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS03845 SM00434 DNA Topoisomerase IV Eco28_RS03850 SM00563 Phosphate acyltransferases Eco28_RS03860 SM00729 Elongator protein 3, MiaB family, Radical SAM Eco28_RS03885 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS04080 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS04080 SM00895 Eco28_RS04080 Eco28_RS04120 SM01276 Eco28_RS04120 Eco28_RS04150 SM00382 ATPases associated with a variety of cellular activities Eco28_RS04210 SM00487 DEAD-like helicases superfamily Eco28_RS04210 SM00490 helicase superfamily c-terminal domain Eco28_RS04335 SM00528 Domain in histone-like proteins of HNS family Eco28_RS04460 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS04465 SM00919 Malic enzyme, NAD binding domain Eco28_RS04465 SM01274 Eco28_RS04465 Eco28_RS04480 SM00998 Adenylosuccinate lyase C-terminus Eco28_RS04580 SM00478 endonuclease III Eco28_RS04580 SM00525 Eco28_RS04580 Eco28_RS04605 SM00870 Eco28_RS04605 Eco28_RS04615 SM00729 Elongator protein 3, MiaB family, Radical SAM Eco28_RS04625 SM01152 Eco28_RS04625 Eco28_RS04640 SM00382 ATPases associated with a variety of cellular activities Eco28_RS04645 SM00732 Likely ribonuclease with RNase H fold. Eco28_RS04670 SM00731 SprT homologues. Eco28_RS04720 SM00861 Transketolase, pyrimidine binding domain Eco28_RS04725 SM00244 prohibitin homologues Eco28_RS04765 SM00382 ATPases associated with a variety of cellular activities Eco28_RS04770 SM00382 ATPases associated with a variety of cellular activities Eco28_RS04795 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Eco28_RS04915 SM01011 Aminopeptidase P, N-terminal domain Eco28_RS04950 SM01022 Eco28_RS04950 Eco28_RS05055 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Eco28_RS05060 SM01092 CO dehydrogenase flavoprotein C-terminal domain Eco28_RS05115 SM00091 PAS domain Eco28_RS05115 SM00382 ATPases associated with a variety of cellular activities Eco28_RS05125 SM01092 CO dehydrogenase flavoprotein C-terminal domain Eco28_RS05130 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Eco28_RS05140 SM00257 Lysin motif Eco28_RS05160 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS05180 SM00382 ATPases associated with a variety of cellular activities Eco28_RS05225 SM00421 helix_turn_helix, Lux Regulon Eco28_RS05260 SM00421 helix_turn_helix, Lux Regulon Eco28_RS05275 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS05315 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS05375 SM00354 helix_turn _helix lactose operon repressor Eco28_RS05380 SM00563 Phosphate acyltransferases Eco28_RS05405 SM00927 DNA mismatch repair enzyme MutH Eco28_RS05415 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Eco28_RS05465 SM00382 ATPases associated with a variety of cellular activities Eco28_RS05475 SM00646 Eco28_RS05475 Eco28_RS05500 SM00925 MltA specific insert domain Eco28_RS05540 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS05540 SM01134 Eco28_RS05540 Eco28_RS05565 SM01007 Class II Aldolase and Adducin N-terminal domain Eco28_RS05575 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Eco28_RS05575 SM00475 5'-3' exonuclease Eco28_RS05625 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Eco28_RS05630 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Eco28_RS05635 SM00073 Histidine Phosphotransfer domain Eco28_RS05635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS05635 SM00387 Histidine kinase-like ATPases Eco28_RS05635 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS05635 SM00448 cheY-homologous receiver domain Eco28_RS05645 SM00954 Region found in RelA / SpoT proteins Eco28_RS05650 SM00966 SpoVT / AbrB like domain Eco28_RS05670 SM01192 Eco28_RS05670 Eco28_RS05670 SM01193 Eco28_RS05670 Eco28_RS05725 SM00893 Electron transfer flavoprotein domain Eco28_RS05780 SM00487 DEAD-like helicases superfamily Eco28_RS05810 SM01101 Eco28_RS05810 Eco28_RS05880 SM00257 Lysin motif Eco28_RS05890 SM00347 helix_turn_helix multiple antibiotic resistance protein Eco28_RS05915 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Eco28_RS05915 SM00534 ATPase domain of DNA mismatch repair MUTS family Eco28_RS05930 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Eco28_RS05930 SM00382 ATPases associated with a variety of cellular activities Eco28_RS06010 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS06025 SM00354 helix_turn _helix lactose operon repressor Eco28_RS06045 SM00849 Metallo-beta-lactamase superfamily Eco28_RS06050 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Eco28_RS06050 SM00382 ATPases associated with a variety of cellular activities Eco28_RS06060 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS06060 SM01134 Eco28_RS06060 Eco28_RS06100 SM00382 ATPases associated with a variety of cellular activities Eco28_RS06110 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Eco28_RS06170 SM00347 helix_turn_helix multiple antibiotic resistance protein Eco28_RS06200 SM00382 ATPases associated with a variety of cellular activities Eco28_RS06240 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS06260 SM00528 Domain in histone-like proteins of HNS family Eco28_RS06265 SM00450 Rhodanese Homology Domain Eco28_RS06270 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Eco28_RS06280 SM00257 Lysin motif Eco28_RS06280 SM00749 bacterial OsmY and nodulation domain Eco28_RS06285 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS06285 SM00895 Eco28_RS06285 Eco28_RS06315 SM00642 Alpha-amylase domain Eco28_RS06350 SM00869 Autotransporter beta-domain Eco28_RS06365 SM00493 Eco28_RS06365 Eco28_RS06365 SM00778 Zinc-binding domain of primase-helicase Eco28_RS06365 SM00885 D5 N terminal like Eco28_RS06480 SM01091 Transporter associated domain Eco28_RS06490 SM00382 ATPases associated with a variety of cellular activities Eco28_RS06490 SM00962 SRP54-type protein, GTPase domain Eco28_RS06490 SM00963 SRP54-type protein, helical bundle domain Eco28_RS06520 SM00267 diguanylate cyclase Eco28_RS06540 SM00830 Chorismate mutase type II Eco28_RS06545 SM00830 Chorismate mutase type II Eco28_RS06740 SM00857 Resolvase, N terminal domain Eco28_RS06825 SM00363 S4 RNA-binding domain Eco28_RS06835 SM00382 ATPases associated with a variety of cellular activities Eco28_RS06835 SM01086 C-terminal, D2-small domain, of ClpB protein Eco28_RS06875 SM00155 Phospholipase D. Active site motifs. Eco28_RS06880 SM00881 CoA binding domain Eco28_RS06885 SM01144 Eco28_RS06885 Eco28_RS06900 SM00967 RNA 2'-O ribose methyltransferase substrate binding Eco28_RS06905 SM00986 Uracil DNA glycosylase superfamily Eco28_RS06905 SM00987 UreE urease accessory protein, C-terminal domain Eco28_RS06925 SM00487 DEAD-like helicases superfamily Eco28_RS06925 SM00490 helicase superfamily c-terminal domain Eco28_RS06975 SM00358 Double-stranded RNA binding motif Eco28_RS06975 SM00535 Ribonuclease III family Eco28_RS07035 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS07045 SM01211 Eco28_RS07045 Eco28_RS07050 SM00387 Histidine kinase-like ATPases Eco28_RS07050 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS07060 SM00382 ATPases associated with a variety of cellular activities Eco28_RS07060 SM00448 cheY-homologous receiver domain Eco28_RS07065 SM00938 Nitrogen regulatory protein P-II Eco28_RS07085 SM00028 Tetratricopeptide repeats Eco28_RS07095 SM00382 ATPases associated with a variety of cellular activities Eco28_RS07105 SM00829 Enoylreductase Eco28_RS07195 SM00271 DnaJ molecular chaperone homology domain Eco28_RS07225 SM00450 Rhodanese Homology Domain Eco28_RS07230 SM01359 Eco28_RS07230 Eco28_RS07230 SM01360 Eco28_RS07230 Eco28_RS07240 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS07260 SM00562 Eco28_RS07260 Eco28_RS07270 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS07290 SM00564 beta-propeller repeat Eco28_RS07310 SM00116 Domain in cystathionine beta-synthase and other proteins. Eco28_RS07310 SM01240 Eco28_RS07310 Eco28_RS07360 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS07540 SM01040 BRO family, N-terminal domain Eco28_RS07605 SM00052 Putative diguanylate phosphodiesterase Eco28_RS07605 SM00267 diguanylate cyclase Eco28_RS07670 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Eco28_RS07670 SM00382 ATPases associated with a variety of cellular activities Eco28_RS07735 SM01130 Eco28_RS07735 Eco28_RS07805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS07805 SM00387 Histidine kinase-like ATPases Eco28_RS07825 SM00861 Transketolase, pyrimidine binding domain Eco28_RS07840 SM00919 Malic enzyme, NAD binding domain Eco28_RS07840 SM01274 Eco28_RS07840 Eco28_RS07845 SM00877 Eco28_RS07845 Eco28_RS07870 SM00877 Eco28_RS07870 Eco28_RS07915 SM00877 Eco28_RS07915 Eco28_RS07920 SM00877 Eco28_RS07920 Eco28_RS07925 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS07935 SM00646 Eco28_RS07935 Eco28_RS07980 SM00822 Eco28_RS07980 Eco28_RS08000 SM00382 ATPases associated with a variety of cellular activities Eco28_RS08045 SM00771 ZipA, C-terminal domain (FtsZ-binding) Eco28_RS08050 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Eco28_RS08050 SM00292 breast cancer carboxy-terminal domain Eco28_RS08050 SM00532 Ligase N family Eco28_RS08105 SM01321 Eco28_RS08105 Eco28_RS08135 SM00052 Putative diguanylate phosphodiesterase Eco28_RS08135 SM00267 diguanylate cyclase Eco28_RS08190 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS08195 SM00448 cheY-homologous receiver domain Eco28_RS08195 SM00850 LytTr DNA-binding domain Eco28_RS08200 SM00387 Histidine kinase-like ATPases Eco28_RS08255 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS08255 SM00073 Histidine Phosphotransfer domain Eco28_RS08255 SM00387 Histidine kinase-like ATPases Eco28_RS08255 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS08255 SM00448 cheY-homologous receiver domain Eco28_RS08260 SM00421 helix_turn_helix, Lux Regulon Eco28_RS08260 SM00448 cheY-homologous receiver domain Eco28_RS08285 SM00354 helix_turn _helix lactose operon repressor Eco28_RS08290 SM00640 Glycosyl hydrolases family 32 Eco28_RS08400 SM00463 Small MutS-related domain Eco28_RS08440 SM00825 Beta-ketoacyl synthase Eco28_RS08465 SM00859 Semialdehyde dehydrogenase, NAD binding domain Eco28_RS08510 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS08515 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS08530 SM00382 ATPases associated with a variety of cellular activities Eco28_RS08545 SM00905 Dihydroneopterin aldolase Eco28_RS08605 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Eco28_RS08645 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Eco28_RS08650 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS08650 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Eco28_RS08735 SM00849 Metallo-beta-lactamase superfamily Eco28_RS08770 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Eco28_RS08835 SM00852 Probable molybdopterin binding domain Eco28_RS08840 SM00346 helix_turn_helix isocitrate lyase regulation Eco28_RS08845 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Eco28_RS08935 SM00869 Autotransporter beta-domain Eco28_RS08945 SM00434 DNA Topoisomerase IV Eco28_RS08960 SM01359 Eco28_RS08960 Eco28_RS08960 SM01360 Eco28_RS08960 Eco28_RS08985 SM00882 Coenzyme A transferase Eco28_RS08990 SM00882 Coenzyme A transferase Eco28_RS08995 SM00382 ATPases associated with a variety of cellular activities Eco28_RS08995 SM00448 cheY-homologous receiver domain Eco28_RS09000 SM00091 PAS domain Eco28_RS09000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS09000 SM00387 Histidine kinase-like ATPases Eco28_RS09000 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS09005 SM00387 Histidine kinase-like ATPases Eco28_RS09005 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS09005 SM00448 cheY-homologous receiver domain Eco28_RS09010 SM00421 helix_turn_helix, Lux Regulon Eco28_RS09010 SM00448 cheY-homologous receiver domain Eco28_RS09015 SM00387 Histidine kinase-like ATPases Eco28_RS09040 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS09050 SM00382 ATPases associated with a variety of cellular activities Eco28_RS09080 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS09105 SM00382 ATPases associated with a variety of cellular activities Eco28_RS09145 SM00421 helix_turn_helix, Lux Regulon Eco28_RS09145 SM00448 cheY-homologous receiver domain Eco28_RS09155 SM00869 Autotransporter beta-domain Eco28_RS09185 SM00487 DEAD-like helicases superfamily Eco28_RS09185 SM00490 helicase superfamily c-terminal domain Eco28_RS09195 SM00363 S4 RNA-binding domain Eco28_RS09215 SM00382 ATPases associated with a variety of cellular activities Eco28_RS09235 SM00052 Putative diguanylate phosphodiesterase Eco28_RS09245 SM00014 Acid phosphatase homologues Eco28_RS09250 SM00833 Cobalamin synthesis protein cobW C-terminal domain Eco28_RS09260 SM00841 Elongation factor P, C-terminal Eco28_RS09260 SM01185 Eco28_RS09260 Eco28_RS09305 SM00100 Cyclic nucleotide-monophosphate binding domain Eco28_RS09325 SM00518 AP endonuclease family 2 Eco28_RS09390 SM00354 helix_turn _helix lactose operon repressor Eco28_RS09400 SM00382 ATPases associated with a variety of cellular activities Eco28_RS09495 SM01217 Eco28_RS09495 Eco28_RS09510 SM00382 ATPases associated with a variety of cellular activities Eco28_RS09525 SM00422 helix_turn_helix, mercury resistance Eco28_RS09530 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Eco28_RS09535 SM00448 cheY-homologous receiver domain Eco28_RS09535 SM00850 LytTr DNA-binding domain Eco28_RS09555 SM00327 von Willebrand factor (vWF) type A domain Eco28_RS09565 SM00382 ATPases associated with a variety of cellular activities Eco28_RS09595 SM00773 Proposed nucleic acid binding domain Eco28_RS09680 SM00641 Glycosyl hydrolases family 25 Eco28_RS09685 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS09685 SM00866 Eco28_RS09685 Eco28_RS09705 SM01133 Eco28_RS09705 Eco28_RS09745 SM00829 Enoylreductase Eco28_RS09750 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS09750 SM01134 Eco28_RS09750 Eco28_RS09755 SM00046 Diacylglycerol kinase catalytic domain (presumed) Eco28_RS09800 SM00448 cheY-homologous receiver domain Eco28_RS09800 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS09805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS09805 SM00387 Histidine kinase-like ATPases Eco28_RS09805 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS09830 SM00327 von Willebrand factor (vWF) type A domain Eco28_RS09855 SM00478 endonuclease III Eco28_RS09855 SM01009 AlkA N-terminal domain Eco28_RS09860 SM00052 Putative diguanylate phosphodiesterase Eco28_RS09860 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Eco28_RS09860 SM00091 PAS domain Eco28_RS09860 SM00267 diguanylate cyclase Eco28_RS09880 SM01091 Transporter associated domain Eco28_RS09890 SM00226 Low molecular weight phosphatase family Eco28_RS10075 SM01350 Eco28_RS10075 Eco28_RS10080 SM00984 UDP binding domain Eco28_RS10180 SM00479 Eco28_RS10180 Eco28_RS10185 SM00936 Penicillin-binding protein 5, C-terminal domain Eco28_RS10190 SM00871 Bacterial transcription activator, effector binding domain Eco28_RS10355 SM00382 ATPases associated with a variety of cellular activities Eco28_RS10625 SM00095 Transthyretin Eco28_RS10630 SM00448 cheY-homologous receiver domain Eco28_RS10630 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS10635 SM00387 Histidine kinase-like ATPases Eco28_RS10635 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS10685 SM00267 diguanylate cyclase Eco28_RS10710 SM00421 helix_turn_helix, Lux Regulon Eco28_RS10760 SM00382 ATPases associated with a variety of cellular activities Eco28_RS10830 SM00642 Alpha-amylase domain Eco28_RS10870 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS10870 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Eco28_RS10885 SM00382 ATPases associated with a variety of cellular activities Eco28_RS10890 SM00421 helix_turn_helix, Lux Regulon Eco28_RS10900 SM00421 helix_turn_helix, Lux Regulon Eco28_RS10900 SM00448 cheY-homologous receiver domain Eco28_RS10905 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Eco28_RS10905 SM00465 GIY-YIG type nucleases (URI domain) Eco28_RS10980 SM00382 ATPases associated with a variety of cellular activities Eco28_RS11025 SM00073 Histidine Phosphotransfer domain Eco28_RS11025 SM00260 Two component signalling adaptor domain Eco28_RS11025 SM00387 Histidine kinase-like ATPases Eco28_RS11025 SM01231 Eco28_RS11025 Eco28_RS11030 SM00260 Two component signalling adaptor domain Eco28_RS11035 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Eco28_RS11035 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS11035 SM00319 Homologues of the ligand binding domain of Tar Eco28_RS11040 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Eco28_RS11040 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS11040 SM00319 Homologues of the ligand binding domain of Tar Eco28_RS11045 SM00138 Methyltransferase, chemotaxis proteins Eco28_RS11050 SM00448 cheY-homologous receiver domain Eco28_RS11055 SM00448 cheY-homologous receiver domain Eco28_RS11085 SM00836 DALR anticodon binding domain Eco28_RS11085 SM01016 Arginyl tRNA synthetase N terminal dom Eco28_RS11170 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Eco28_RS11175 SM00382 ATPases associated with a variety of cellular activities Eco28_RS11185 SM00382 ATPases associated with a variety of cellular activities Eco28_RS11195 SM00257 Lysin motif Eco28_RS11260 SM00479 Eco28_RS11260 Eco28_RS11320 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Eco28_RS11325 SM00945 ProQ/FINO family Eco28_RS11330 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Eco28_RS11330 SM00245 tail specific protease Eco28_RS11350 SM00346 helix_turn_helix isocitrate lyase regulation Eco28_RS11380 SM00357 Cold shock protein domain Eco28_RS11430 SM01091 Transporter associated domain Eco28_RS11435 SM00052 Putative diguanylate phosphodiesterase Eco28_RS11470 SM00487 DEAD-like helicases superfamily Eco28_RS11470 SM00491 Eco28_RS11470 Eco28_RS11490 SM00341 Helicase and RNase D C-terminal Eco28_RS11490 SM00474 3'-5' exonuclease Eco28_RS11510 SM01329 Eco28_RS11510 Eco28_RS11550 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Eco28_RS11550 SM00267 diguanylate cyclase Eco28_RS11570 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS11590 SM00267 diguanylate cyclase Eco28_RS11595 SM00267 diguanylate cyclase Eco28_RS11605 SM00763 PrkA AAA domain Eco28_RS11625 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Eco28_RS11650 SM00829 Enoylreductase Eco28_RS11670 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS11670 SM01134 Eco28_RS11670 Eco28_RS11690 SM00870 Eco28_RS11690 Eco28_RS11720 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Eco28_RS11720 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Eco28_RS11720 SM00493 Eco28_RS11720 Eco28_RS11730 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Eco28_RS11750 SM00450 Rhodanese Homology Domain Eco28_RS11755 SM00382 ATPases associated with a variety of cellular activities Eco28_RS11830 SM00465 GIY-YIG type nucleases (URI domain) Eco28_RS11865 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS11880 SM01060 Eco28_RS11880 Eco28_RS11945 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Eco28_RS11970 SM00873 B3/4 domain Eco28_RS11970 SM00874 tRNA synthetase B5 domain Eco28_RS11970 SM00896 Ferredoxin-fold anticodon binding domain Eco28_RS11975 SM00411 bacterial (prokaryotic) histone like domain Eco28_RS11990 SM00382 ATPases associated with a variety of cellular activities Eco28_RS12075 SM00893 Electron transfer flavoprotein domain Eco28_RS12080 SM00893 Electron transfer flavoprotein domain Eco28_RS12090 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS12100 SM00882 Coenzyme A transferase Eco28_RS12185 SM00382 ATPases associated with a variety of cellular activities Eco28_RS12205 SM00257 Lysin motif Eco28_RS12230 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain Eco28_RS12305 SM00354 helix_turn _helix lactose operon repressor Eco28_RS12340 SM00382 ATPases associated with a variety of cellular activities Eco28_RS12340 SM00487 DEAD-like helicases superfamily Eco28_RS12340 SM00490 helicase superfamily c-terminal domain Eco28_RS12345 SM00479 Eco28_RS12345 Eco28_RS12395 SM00347 helix_turn_helix multiple antibiotic resistance protein Eco28_RS12420 SM00363 S4 RNA-binding domain Eco28_RS12445 SM00478 endonuclease III Eco28_RS12445 SM00525 Eco28_RS12445 Eco28_RS12455 SM00900 Eco28_RS12455 Eco28_RS12530 SM00354 helix_turn _helix lactose operon repressor Eco28_RS12585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS12585 SM00387 Histidine kinase-like ATPases Eco28_RS12585 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS12590 SM00448 cheY-homologous receiver domain Eco28_RS12590 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS12620 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Eco28_RS12620 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Eco28_RS12705 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS12710 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS12745 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Eco28_RS12795 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS12860 SM00507 HNH nucleases Eco28_RS12870 SM00357 Cold shock protein domain Eco28_RS12875 SM00357 Cold shock protein domain Eco28_RS12900 SM00357 Cold shock protein domain Eco28_RS13000 SM00885 D5 N terminal like Eco28_RS13065 SM00635 Bacterial Ig-like domain 2 Eco28_RS13105 SM00060 Fibronectin type 3 domain Eco28_RS13125 SM00857 Resolvase, N terminal domain Eco28_RS13130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Eco28_RS13130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS13145 SM00857 Resolvase, N terminal domain Eco28_RS13175 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS13175 SM00895 Eco28_RS13175 Eco28_RS13210 SM00267 diguanylate cyclase Eco28_RS13230 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS13230 SM00866 Eco28_RS13230 Eco28_RS13265 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS13270 SM00347 helix_turn_helix multiple antibiotic resistance protein Eco28_RS13320 SM00267 diguanylate cyclase Eco28_RS13355 SM01133 Eco28_RS13355 Eco28_RS13375 SM00382 ATPases associated with a variety of cellular activities Eco28_RS13390 SM00869 Autotransporter beta-domain Eco28_RS13395 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS13405 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS13455 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS13470 SM00382 ATPases associated with a variety of cellular activities Eco28_RS13505 SM00267 diguanylate cyclase Eco28_RS13510 SM00052 Putative diguanylate phosphodiesterase Eco28_RS13510 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Eco28_RS13510 SM00091 PAS domain Eco28_RS13510 SM00267 diguanylate cyclase Eco28_RS13535 SM00382 ATPases associated with a variety of cellular activities Eco28_RS13540 SM00382 ATPases associated with a variety of cellular activities Eco28_RS13565 SM00919 Malic enzyme, NAD binding domain Eco28_RS13565 SM01274 Eco28_RS13565 Eco28_RS13570 SM00829 Enoylreductase Eco28_RS13575 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS13625 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS13655 SM00903 Flavin reductase like domain Eco28_RS13740 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS13740 SM00895 Eco28_RS13740 Eco28_RS13745 SM00829 Enoylreductase Eco28_RS13800 SM00382 ATPases associated with a variety of cellular activities Eco28_RS13810 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS13815 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS13835 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS13900 SM01150 Eco28_RS13900 Eco28_RS13910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Eco28_RS13910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS13910 SM00319 Homologues of the ligand binding domain of Tar Eco28_RS13930 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Eco28_RS13965 SM00382 ATPases associated with a variety of cellular activities Eco28_RS13965 SM00487 DEAD-like helicases superfamily Eco28_RS13965 SM00490 helicase superfamily c-terminal domain Eco28_RS13965 SM00847 Helicase associated domain (HA2) Add an annotation Eco28_RS13975 SM00195 Dual specificity phosphatase, catalytic domain Eco28_RS13975 SM00404 Protein tyrosine phosphatase, catalytic domain motif Eco28_RS14045 SM00890 Domain of unknown function Eco28_RS14070 SM00857 Resolvase, N terminal domain Eco28_RS14095 SM01321 Eco28_RS14095 Eco28_RS14105 SM00060 Fibronectin type 3 domain Eco28_RS14115 SM00232 JAB/MPN domain Eco28_RS14210 SM00470 ParB-like nuclease domain Eco28_RS14335 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS14410 SM00487 DEAD-like helicases superfamily Eco28_RS14410 SM00490 helicase superfamily c-terminal domain Eco28_RS14425 SM00091 PAS domain Eco28_RS14425 SM00267 diguanylate cyclase Eco28_RS14430 SM00463 Small MutS-related domain Eco28_RS14470 SM00100 Cyclic nucleotide-monophosphate binding domain Eco28_RS14470 SM00419 helix_turn_helix, cAMP Regulatory protein Eco28_RS14520 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Eco28_RS14530 SM00091 PAS domain Eco28_RS14530 SM00382 ATPases associated with a variety of cellular activities Eco28_RS14545 SM00354 helix_turn _helix lactose operon repressor Eco28_RS14555 SM00382 ATPases associated with a variety of cellular activities Eco28_RS14600 SM00642 Alpha-amylase domain Eco28_RS14605 SM00450 Rhodanese Homology Domain Eco28_RS14630 SM00382 ATPases associated with a variety of cellular activities Eco28_RS14650 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS14660 SM01230 Eco28_RS14660 Eco28_RS14695 SM00382 ATPases associated with a variety of cellular activities Eco28_RS14700 SM00382 ATPases associated with a variety of cellular activities Eco28_RS14740 SM00357 Cold shock protein domain Eco28_RS14740 SM00955 Eco28_RS14740 Eco28_RS14750 SM00052 Putative diguanylate phosphodiesterase Eco28_RS14750 SM00091 PAS domain Eco28_RS14750 SM00267 diguanylate cyclase Eco28_RS14760 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS14760 SM01134 Eco28_RS14760 Eco28_RS14775 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Eco28_RS14780 SM00028 Tetratricopeptide repeats Eco28_RS14790 SM00014 Acid phosphatase homologues Eco28_RS14830 SM01321 Eco28_RS14830 Eco28_RS14840 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Eco28_RS14840 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Eco28_RS14840 SM00493 Eco28_RS14840 Eco28_RS14860 SM00822 Eco28_RS14860 Eco28_RS14870 SM00363 S4 RNA-binding domain Eco28_RS14885 SM00481 DNA polymerase alpha chain like domain Eco28_RS14970 SM00155 Phospholipase D. Active site motifs. Eco28_RS14980 SM00382 ATPases associated with a variety of cellular activities Eco28_RS14985 SM00382 ATPases associated with a variety of cellular activities Eco28_RS15025 SM00528 Domain in histone-like proteins of HNS family Eco28_RS15035 SM00448 cheY-homologous receiver domain Eco28_RS15090 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS15105 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS15105 SM00387 Histidine kinase-like ATPases Eco28_RS15110 SM00421 helix_turn_helix, Lux Regulon Eco28_RS15110 SM00448 cheY-homologous receiver domain Eco28_RS15180 SM00937 Eco28_RS15180 Eco28_RS15200 SM01400 Eco28_RS15200 Eco28_RS15235 SM00869 Autotransporter beta-domain Eco28_RS15240 SM00091 PAS domain Eco28_RS15240 SM00382 ATPases associated with a variety of cellular activities Eco28_RS15250 SM01120 Eco28_RS15250 Eco28_RS15285 SM00382 ATPases associated with a variety of cellular activities Eco28_RS15330 SM01091 Transporter associated domain Eco28_RS15335 SM00364 Leucine-rich repeats, bacterial type Eco28_RS15340 SM01005 Alanine racemase, C-terminal domain Eco28_RS15355 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS15460 SM00869 Autotransporter beta-domain Eco28_RS15475 SM00052 Putative diguanylate phosphodiesterase Eco28_RS15500 SM00052 Putative diguanylate phosphodiesterase Eco28_RS15500 SM01034 Sensors of blue-light using FAD Eco28_RS15505 SM00422 helix_turn_helix, mercury resistance Eco28_RS15515 SM01321 Eco28_RS15515 Eco28_RS15535 SM01329 Eco28_RS15535 Eco28_RS15565 SM00448 cheY-homologous receiver domain Eco28_RS15565 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS15570 SM00387 Histidine kinase-like ATPases Eco28_RS15575 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. Eco28_RS15590 SM00382 ATPases associated with a variety of cellular activities Eco28_RS15625 SM00382 ATPases associated with a variety of cellular activities Eco28_RS15640 SM00487 DEAD-like helicases superfamily Eco28_RS15640 SM00490 helicase superfamily c-terminal domain Eco28_RS15640 SM00982 Eco28_RS15640 Eco28_RS15640 SM01058 CarD-like/TRCF domain Eco28_RS15645 SM00257 Lysin motif Eco28_RS15750 SM00857 Resolvase, N terminal domain Eco28_RS15985 SM00825 Beta-ketoacyl synthase Eco28_RS15995 SM00822 Eco28_RS15995 Eco28_RS16000 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Eco28_RS16030 SM00363 S4 RNA-binding domain Eco28_RS16040 SM00316 Ribosomal protein S1-like RNA-binding domain Eco28_RS16055 SM00047 Lysozyme subfamily 2 Eco28_RS16100 SM00858 Eco28_RS16100 Eco28_RS16180 SM00867 YceI-like domain Eco28_RS16185 SM00450 Rhodanese Homology Domain Eco28_RS16235 SM00155 Phospholipase D. Active site motifs. Eco28_RS16240 SM00506 Appr-1"-p processing enzyme Eco28_RS16275 SM00421 helix_turn_helix, Lux Regulon Eco28_RS16305 SM00481 DNA polymerase alpha chain like domain Eco28_RS16395 SM00869 Autotransporter beta-domain Eco28_RS16515 SM00382 ATPases associated with a variety of cellular activities Eco28_RS16515 SM01086 C-terminal, D2-small domain, of ClpB protein Eco28_RS16645 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Eco28_RS16670 SM00382 ATPases associated with a variety of cellular activities Eco28_RS16680 SM00825 Beta-ketoacyl synthase Eco28_RS16685 SM00825 Beta-ketoacyl synthase Eco28_RS16705 SM00822 Eco28_RS16705 Eco28_RS16720 SM00912 haemagglutination activity domain Eco28_RS16770 SM00052 Putative diguanylate phosphodiesterase Eco28_RS16775 SM00267 diguanylate cyclase Eco28_RS16885 SM00903 Flavin reductase like domain Eco28_RS16925 SM00271 DnaJ molecular chaperone homology domain Eco28_RS16950 SM00448 cheY-homologous receiver domain Eco28_RS16950 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS16960 SM00073 Histidine Phosphotransfer domain Eco28_RS16960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS16960 SM00387 Histidine kinase-like ATPases Eco28_RS16960 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS16960 SM00448 cheY-homologous receiver domain Eco28_RS16985 SM00357 Cold shock protein domain Eco28_RS16990 SM00357 Cold shock protein domain Eco28_RS17030 SM00226 Low molecular weight phosphatase family Eco28_RS17110 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Eco28_RS17115 SM00992 Hemimethylated DNA-binding protein YccV like Eco28_RS17120 SM00881 CoA binding domain Eco28_RS17130 SM00851 MGS-like domain Eco28_RS17205 SM00382 ATPases associated with a variety of cellular activities Eco28_RS17210 SM00981 Eco28_RS17210 Eco28_RS17285 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS17300 SM00382 ATPases associated with a variety of cellular activities Eco28_RS17335 SM00849 Metallo-beta-lactamase superfamily Eco28_RS17405 SM00382 ATPases associated with a variety of cellular activities Eco28_RS17410 SM00849 Metallo-beta-lactamase superfamily Eco28_RS17415 SM00411 bacterial (prokaryotic) histone like domain Eco28_RS17420 SM00316 Ribosomal protein S1-like RNA-binding domain Eco28_RS17515 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS17525 SM00382 ATPases associated with a variety of cellular activities Eco28_RS17535 SM00843 Eco28_RS17535 Eco28_RS17540 SM00344 helix_turn_helix ASNC type Eco28_RS17555 SM00382 ATPases associated with a variety of cellular activities Eco28_RS17560 SM00382 ATPases associated with a variety of cellular activities Eco28_RS17575 SM00316 Ribosomal protein S1-like RNA-binding domain Eco28_RS17640 SM00869 Autotransporter beta-domain Eco28_RS17660 SM00327 von Willebrand factor (vWF) type A domain Eco28_RS17805 SM00382 ATPases associated with a variety of cellular activities Eco28_RS17805 SM01086 C-terminal, D2-small domain, of ClpB protein Eco28_RS17815 SM00357 Cold shock protein domain Eco28_RS17820 SM00382 ATPases associated with a variety of cellular activities Eco28_RS17885 SM00644 Eco28_RS17885 Eco28_RS17915 SM00382 ATPases associated with a variety of cellular activities Eco28_RS17920 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS17920 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Eco28_RS17935 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS17935 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Eco28_RS17975 SM00382 ATPases associated with a variety of cellular activities Eco28_RS18055 SM00014 Acid phosphatase homologues Eco28_RS18060 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS18060 SM01134 Eco28_RS18060 Eco28_RS18065 SM00936 Penicillin-binding protein 5, C-terminal domain Eco28_RS18085 SM00729 Elongator protein 3, MiaB family, Radical SAM Eco28_RS18095 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS18100 SM00267 diguanylate cyclase Eco28_RS18105 SM00052 Putative diguanylate phosphodiesterase Eco28_RS18135 SM00382 ATPases associated with a variety of cellular activities Eco28_RS18145 SM00852 Probable molybdopterin binding domain Eco28_RS18180 SM00382 ATPases associated with a variety of cellular activities Eco28_RS18195 SM00529 Helix-turn-helix diphteria tox regulatory element Eco28_RS18235 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS18235 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Eco28_RS18245 SM00382 ATPases associated with a variety of cellular activities Eco28_RS18270 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. Eco28_RS18295 SM00487 DEAD-like helicases superfamily Eco28_RS18295 SM00488 Eco28_RS18295 Eco28_RS18295 SM00491 Eco28_RS18295 Eco28_RS18320 SM00487 DEAD-like helicases superfamily Eco28_RS18320 SM00490 helicase superfamily c-terminal domain Eco28_RS18335 SM00382 ATPases associated with a variety of cellular activities Eco28_RS18360 SM00155 Phospholipase D. Active site motifs. Eco28_RS18395 SM00852 Probable molybdopterin binding domain Eco28_RS18400 SM00729 Elongator protein 3, MiaB family, Radical SAM Eco28_RS18410 SM00487 DEAD-like helicases superfamily Eco28_RS18410 SM00490 helicase superfamily c-terminal domain Eco28_RS18430 SM00729 Elongator protein 3, MiaB family, Radical SAM Eco28_RS18430 SM00876 Biotin and Thiamin Synthesis associated domain Eco28_RS18485 SM00382 ATPases associated with a variety of cellular activities Eco28_RS18515 SM00382 ATPases associated with a variety of cellular activities Eco28_RS18540 SM00855 Phosphoglycerate mutase family Eco28_RS18735 SM00881 CoA binding domain Eco28_RS18750 SM00861 Transketolase, pyrimidine binding domain Eco28_RS18815 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Eco28_RS18815 SM01232 Eco28_RS18815 Eco28_RS18825 SM00797 Allophanate hydrolase subunit 2 Eco28_RS18830 SM00796 Allophanate hydrolase subunit 1 Eco28_RS18880 SM00387 Histidine kinase-like ATPases Eco28_RS18880 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS18885 SM00448 cheY-homologous receiver domain Eco28_RS18885 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS19030 SM00729 Elongator protein 3, MiaB family, Radical SAM Eco28_RS19045 SM00116 Domain in cystathionine beta-synthase and other proteins. Eco28_RS19045 SM01091 Transporter associated domain Eco28_RS19055 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS19070 SM00382 ATPases associated with a variety of cellular activities Eco28_RS19095 SM00671 Sel1-like repeats. Eco28_RS19100 SM00271 DnaJ molecular chaperone homology domain Eco28_RS19110 SM00671 Sel1-like repeats. Eco28_RS19140 SM00855 Phosphoglycerate mutase family Eco28_RS19170 SM00936 Penicillin-binding protein 5, C-terminal domain Eco28_RS19200 SM00729 Elongator protein 3, MiaB family, Radical SAM Eco28_RS19220 SM00357 Cold shock protein domain Eco28_RS19240 SM00448 cheY-homologous receiver domain Eco28_RS19245 SM00091 PAS domain Eco28_RS19245 SM00387 Histidine kinase-like ATPases Eco28_RS19260 SM00764 Citrate lyase ligase C-terminal domain Eco28_RS19360 SM00470 ParB-like nuclease domain Eco28_RS19390 SM00822 Eco28_RS19390 Eco28_RS19430 SM00382 ATPases associated with a variety of cellular activities Eco28_RS19440 SM00823 Phosphopantetheine attachment site Eco28_RS19440 SM00824 Thioesterase Eco28_RS19445 SM00923 MbtH-like protein Eco28_RS19545 SM00448 cheY-homologous receiver domain Eco28_RS19545 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS19550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS19550 SM00387 Histidine kinase-like ATPases Eco28_RS19550 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS19605 SM00028 Tetratricopeptide repeats Eco28_RS19620 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS19635 SM00421 helix_turn_helix, Lux Regulon Eco28_RS19635 SM00448 cheY-homologous receiver domain Eco28_RS19695 SM00840 Eco28_RS19695 Eco28_RS19715 SM01001 AIR carboxylase Eco28_RS19795 SM00346 helix_turn_helix isocitrate lyase regulation Eco28_RS19810 SM00450 Rhodanese Homology Domain Eco28_RS19835 SM00382 ATPases associated with a variety of cellular activities Eco28_RS19845 SM00822 Eco28_RS19845 Eco28_RS19860 SM00382 ATPases associated with a variety of cellular activities Eco28_RS19865 SM00244 prohibitin homologues Eco28_RS19900 SM00422 helix_turn_helix, mercury resistance Eco28_RS19910 SM00382 ATPases associated with a variety of cellular activities Eco28_RS19940 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS20005 SM00387 Histidine kinase-like ATPases Eco28_RS20010 SM00493 Eco28_RS20010 Eco28_RS20020 SM00382 ATPases associated with a variety of cellular activities Eco28_RS20095 SM01266 Eco28_RS20095 Eco28_RS20105 SM00052 Putative diguanylate phosphodiesterase Eco28_RS20140 SM00938 Nitrogen regulatory protein P-II Eco28_RS20145 SM00382 ATPases associated with a variety of cellular activities Eco28_RS20150 SM00382 ATPases associated with a variety of cellular activities Eco28_RS20155 SM00344 helix_turn_helix ASNC type Eco28_RS20180 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Eco28_RS20190 SM00411 bacterial (prokaryotic) histone like domain Eco28_RS20195 SM00382 ATPases associated with a variety of cellular activities Eco28_RS20195 SM00464 Found in ATP-dependent protease La (LON) Eco28_RS20200 SM00382 ATPases associated with a variety of cellular activities Eco28_RS20200 SM00994 ClpX C4-type zinc finger Eco28_RS20200 SM01086 C-terminal, D2-small domain, of ClpB protein Eco28_RS20285 SM00981 Eco28_RS20285 Eco28_RS20305 SM00861 Transketolase, pyrimidine binding domain Eco28_RS20360 SM00507 HNH nucleases Eco28_RS20375 SM01323 Eco28_RS20375 Eco28_RS20400 SM00642 Alpha-amylase domain Eco28_RS20415 SM00091 PAS domain Eco28_RS20415 SM00387 Histidine kinase-like ATPases Eco28_RS20415 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS20420 SM00448 cheY-homologous receiver domain Eco28_RS20420 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS20495 SM00267 diguanylate cyclase Eco28_RS20505 SM00098 Alkaline phosphatase homologues Eco28_RS20560 SM00869 Autotransporter beta-domain Eco28_RS20575 SM01004 Delta-aminolevulinic acid dehydratase Eco28_RS20590 SM00382 ATPases associated with a variety of cellular activities Eco28_RS20595 SM00062 Bacterial periplasmic substrate-binding proteins Eco28_RS20600 SM00421 helix_turn_helix, Lux Regulon Eco28_RS20600 SM00448 cheY-homologous receiver domain Eco28_RS20605 SM00387 Histidine kinase-like ATPases Eco28_RS20625 SM00382 ATPases associated with a variety of cellular activities Eco28_RS20635 SM00829 Enoylreductase Eco28_RS20660 SM00859 Semialdehyde dehydrogenase, NAD binding domain Eco28_RS20690 SM00346 helix_turn_helix isocitrate lyase regulation Eco28_RS20700 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS20705 SM00354 helix_turn _helix lactose operon repressor Eco28_RS20715 SM01038 Beta galactosidase small chain Eco28_RS20725 SM01266 Eco28_RS20725 Eco28_RS20735 SM01116 Eco28_RS20735 Eco28_RS20740 SM00947 Carbonic anhydrase Eco28_RS20780 SM00382 ATPases associated with a variety of cellular activities Eco28_RS20805 SM00829 Enoylreductase Eco28_RS20820 SM00382 ATPases associated with a variety of cellular activities Eco28_RS20830 SM01022 Eco28_RS20830 Eco28_RS20865 SM00248 ankyrin repeats Eco28_RS20885 SM00052 Putative diguanylate phosphodiesterase Eco28_RS20885 SM00421 helix_turn_helix, Lux Regulon Eco28_RS20935 SM00421 helix_turn_helix, Lux Regulon Eco28_RS20945 SM00869 Autotransporter beta-domain Eco28_RS20980 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS21005 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS21005 SM00871 Bacterial transcription activator, effector binding domain Eco28_RS21010 SM00634 Bacterial Ig-like domain (group 1) Eco28_RS21075 SM00421 helix_turn_helix, Lux Regulon Eco28_RS21125 SM01092 CO dehydrogenase flavoprotein C-terminal domain Eco28_RS21130 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Eco28_RS21195 SM00869 Autotransporter beta-domain Eco28_RS21240 SM00974 Eco28_RS21240 Eco28_RS21290 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS21355 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Eco28_RS21370 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS21370 SM00895 Eco28_RS21370 Eco28_RS21420 SM00354 helix_turn _helix lactose operon repressor Eco28_RS21490 SM00870 Eco28_RS21490 Eco28_RS21495 SM00448 cheY-homologous receiver domain Eco28_RS21560 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Eco28_RS21700 SM00671 Sel1-like repeats. Eco28_RS21835 SM00479 Eco28_RS21835 Eco28_RS21850 SM00849 Metallo-beta-lactamase superfamily Eco28_RS21855 SM00257 Lysin motif Eco28_RS21915 SM00382 ATPases associated with a variety of cellular activities Eco28_RS21915 SM00930 Eco28_RS21915 Eco28_RS21960 SM01322 Eco28_RS21960 Eco28_RS21975 SM00977 TilS substrate C-terminal domain Eco28_RS21995 SM00481 DNA polymerase alpha chain like domain Eco28_RS22025 SM00935 Outer membrane protein (OmpH-like) Eco28_RS22035 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Eco28_RS22090 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Eco28_RS22110 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Eco28_RS22120 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Eco28_RS22165 SM00382 ATPases associated with a variety of cellular activities Eco28_RS22180 SM00487 DEAD-like helicases superfamily Eco28_RS22180 SM00490 helicase superfamily c-terminal domain Eco28_RS22180 SM00847 Helicase associated domain (HA2) Add an annotation Eco28_RS22300 SM00382 ATPases associated with a variety of cellular activities Eco28_RS22305 SM00947 Carbonic anhydrase Eco28_RS22315 SM00564 beta-propeller repeat Eco28_RS22380 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS22380 SM00895 Eco28_RS22380 Eco28_RS22405 SM00644 Eco28_RS22405 Eco28_RS22435 SM01240 Eco28_RS22435 Eco28_RS22460 SM00957 SecA DEAD-like domain Eco28_RS22460 SM00958 SecA preprotein cross-linking domain Eco28_RS22475 SM00864 Tubulin/FtsZ family, GTPase domain Eco28_RS22475 SM00865 Tubulin/FtsZ family, C-terminal domain Eco28_RS22480 SM00842 Cell division protein FtsA Eco28_RS22555 SM00354 helix_turn _helix lactose operon repressor Eco28_RS22585 SM00917 LeuA allosteric (dimerisation) domain Eco28_RS22590 SM01329 Eco28_RS22590 Eco28_RS22630 SM00382 ATPases associated with a variety of cellular activities Eco28_RS22640 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS22660 SM01007 Class II Aldolase and Adducin N-terminal domain Eco28_RS22665 SM00486 DNA polymerase type-B family Eco28_RS22670 SM00487 DEAD-like helicases superfamily Eco28_RS22670 SM00490 helicase superfamily c-terminal domain Eco28_RS22685 SM00271 DnaJ molecular chaperone homology domain Eco28_RS22705 SM00650 Ribosomal RNA adenine dimethylases Eco28_RS22760 SM00893 Electron transfer flavoprotein domain Eco28_RS22765 SM00893 Electron transfer flavoprotein domain Eco28_RS22810 SM00851 MGS-like domain Eco28_RS22810 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Eco28_RS22815 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Eco28_RS22850 SM00904 Riboflavin kinase Eco28_RS22915 SM00271 DnaJ molecular chaperone homology domain Eco28_RS22940 SM00852 Probable molybdopterin binding domain Eco28_RS22995 SM00448 cheY-homologous receiver domain Eco28_RS22995 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS23005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS23005 SM00387 Histidine kinase-like ATPases Eco28_RS23005 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS23010 SM00448 cheY-homologous receiver domain Eco28_RS23010 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS23020 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS23020 SM00871 Bacterial transcription activator, effector binding domain Eco28_RS23025 SM00855 Phosphoglycerate mutase family Eco28_RS23050 SM00382 ATPases associated with a variety of cellular activities Eco28_RS23055 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS23060 SM00382 ATPases associated with a variety of cellular activities Eco28_RS23080 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS23095 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Eco28_RS23100 SM01133 Eco28_RS23100 Eco28_RS23130 SM00749 bacterial OsmY and nodulation domain Eco28_RS23185 SM00421 helix_turn_helix, Lux Regulon Eco28_RS23190 SM00421 helix_turn_helix, Lux Regulon Eco28_RS23210 SM00382 ATPases associated with a variety of cellular activities Eco28_RS23225 SM00829 Enoylreductase Eco28_RS23230 SM00895 Eco28_RS23230 Eco28_RS23240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Eco28_RS23240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS23240 SM00319 Homologues of the ligand binding domain of Tar Eco28_RS23265 SM00833 Cobalamin synthesis protein cobW C-terminal domain Eco28_RS23285 SM00487 DEAD-like helicases superfamily Eco28_RS23315 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS23370 SM00634 Bacterial Ig-like domain (group 1) Eco28_RS23420 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS23420 SM00895 Eco28_RS23420 Eco28_RS23485 SM00487 DEAD-like helicases superfamily Eco28_RS23565 SM00829 Enoylreductase Eco28_RS23595 SM00354 helix_turn _helix lactose operon repressor Eco28_RS23665 SM00822 Eco28_RS23665 Eco28_RS23700 SM00831 Cation transporter/ATPase, N-terminus Eco28_RS23705 SM00354 helix_turn _helix lactose operon repressor Eco28_RS23715 SM00642 Alpha-amylase domain Eco28_RS23765 SM00382 ATPases associated with a variety of cellular activities Eco28_RS23785 SM00966 SpoVT / AbrB like domain Eco28_RS23795 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS23840 SM00244 prohibitin homologues Eco28_RS23870 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS23985 SM00857 Resolvase, N terminal domain Eco28_RS24070 SM01091 Transporter associated domain Eco28_RS24155 SM01321 Eco28_RS24155 Eco28_RS24195 SM01007 Class II Aldolase and Adducin N-terminal domain Eco28_RS24205 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Eco28_RS24230 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS24230 SM01134 Eco28_RS24230 Eco28_RS24290 SM00967 RNA 2'-O ribose methyltransferase substrate binding Eco28_RS24295 SM00316 Ribosomal protein S1-like RNA-binding domain Eco28_RS24295 SM00357 Cold shock protein domain Eco28_RS24295 SM00955 Eco28_RS24295 Eco28_RS24305 SM00788 Adenylosuccinate synthetase Eco28_RS24315 SM00244 prohibitin homologues Eco28_RS24320 SM00244 prohibitin homologues Eco28_RS24340 SM00853 MutL C terminal dimerisation domain Eco28_RS24340 SM01340 Eco28_RS24340 Eco28_RS24345 SM00646 Eco28_RS24345 Eco28_RS24380 SM00479 Eco28_RS24380 Eco28_RS24455 SM00841 Elongation factor P, C-terminal Eco28_RS24455 SM01185 Eco28_RS24455 Eco28_RS24480 SM00883 Chaperonin 10 Kd subunit Eco28_RS24530 SM00354 helix_turn _helix lactose operon repressor Eco28_RS24545 SM00640 Glycosyl hydrolases family 32 Eco28_RS24665 SM00869 Autotransporter beta-domain Eco28_RS24850 SM00857 Resolvase, N terminal domain Eco28_RS24890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Eco28_RS24910 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS25010 SM00448 cheY-homologous receiver domain Eco28_RS25015 SM00091 PAS domain Eco28_RS25015 SM00387 Histidine kinase-like ATPases Eco28_RS25070 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS25265 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS25275 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS25295 SM00448 cheY-homologous receiver domain Eco28_RS25295 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS25300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS25300 SM00387 Histidine kinase-like ATPases Eco28_RS25300 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS25355 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS25355 SM00866 Eco28_RS25355 Eco28_RS25380 SM00382 ATPases associated with a variety of cellular activities Eco28_RS25385 SM00382 ATPases associated with a variety of cellular activities Eco28_RS25395 SM00072 Guanylate kinase homologues. Eco28_RS25420 SM00849 Metallo-beta-lactamase superfamily Eco28_RS25450 SM00671 Sel1-like repeats. Eco28_RS25465 SM00028 Tetratricopeptide repeats Eco28_RS25550 SM00422 helix_turn_helix, mercury resistance Eco28_RS25555 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS25560 SM00052 Putative diguanylate phosphodiesterase Eco28_RS25610 SM01005 Alanine racemase, C-terminal domain Eco28_RS25615 SM00382 ATPases associated with a variety of cellular activities Eco28_RS25620 SM00829 Enoylreductase Eco28_RS25645 SM01321 Eco28_RS25645 Eco28_RS25685 SM00563 Phosphate acyltransferases Eco28_RS25720 SM00382 ATPases associated with a variety of cellular activities Eco28_RS25820 SM00244 prohibitin homologues Eco28_RS25840 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS25840 SM01134 Eco28_RS25840 Eco28_RS25850 SM00363 S4 RNA-binding domain Eco28_RS25865 SM00822 Eco28_RS25865 Eco28_RS25905 SM01018 B12 binding domain Eco28_RS25910 SM00346 helix_turn_helix isocitrate lyase regulation Eco28_RS25915 SM00248 ankyrin repeats Eco28_RS25975 SM00798 AICARFT/IMPCHase bienzyme Eco28_RS25975 SM00851 MGS-like domain Eco28_RS25980 SM01209 Eco28_RS25980 Eco28_RS25980 SM01210 Eco28_RS25980 Eco28_RS25985 SM00382 ATPases associated with a variety of cellular activities Eco28_RS25985 SM00448 cheY-homologous receiver domain Eco28_RS25990 SM00387 Histidine kinase-like ATPases Eco28_RS25990 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS26010 SM00411 bacterial (prokaryotic) histone like domain Eco28_RS26065 SM00876 Biotin and Thiamin Synthesis associated domain Eco28_RS26075 SM00663 RNA polymerase I subunit A N-terminus Eco28_RS26105 SM00649 Ribosomal protein L11/L12 Eco28_RS26110 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Eco28_RS26110 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Eco28_RS26250 SM00859 Semialdehyde dehydrogenase, NAD binding domain Eco28_RS26270 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS26370 SM00487 DEAD-like helicases superfamily Eco28_RS26370 SM00490 helicase superfamily c-terminal domain Eco28_RS26375 SM00354 helix_turn _helix lactose operon repressor Eco28_RS26390 SM00382 ATPases associated with a variety of cellular activities Eco28_RS26390 SM01086 C-terminal, D2-small domain, of ClpB protein Eco28_RS26530 SM00857 Resolvase, N terminal domain Eco28_RS26765 SM00530 Helix-turn-helix XRE-family like proteins Eco28_RS26780 SM00448 cheY-homologous receiver domain Eco28_RS26780 SM00862 Transcriptional regulatory protein, C terminal Eco28_RS26785 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Eco28_RS26785 SM00387 Histidine kinase-like ATPases Eco28_RS26785 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS26815 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS26820 SM00342 helix_turn_helix, arabinose operon control protein Eco28_RS26835 SM01007 Class II Aldolase and Adducin N-terminal domain Eco28_RS26885 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Eco28_RS26955 SM00420 helix_turn_helix, Deoxyribose operon repressor Eco28_RS26955 SM01134 Eco28_RS26955 Eco28_RS26970 SM01133 Eco28_RS26970 Eco28_RS27020 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS27020 SM00866 Eco28_RS27020 Eco28_RS27035 SM01230 Eco28_RS27035 Eco28_RS27040 SM00091 PAS domain Eco28_RS27040 SM00387 Histidine kinase-like ATPases Eco28_RS27040 SM00388 His Kinase A (phosphoacceptor) domain Eco28_RS27045 SM00382 ATPases associated with a variety of cellular activities Eco28_RS27045 SM00448 cheY-homologous receiver domain Eco28_RS27055 SM00729 Elongator protein 3, MiaB family, Radical SAM Eco28_RS27070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Eco28_RS27070 SM00474 3'-5' exonuclease Eco28_RS27070 SM00475 5'-3' exonuclease Eco28_RS27070 SM00482 DNA polymerase A domain Eco28_RS27080 SM00563 Phosphate acyltransferases Eco28_RS27180 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Eco28_RS27270 SM00341 Helicase and RNase D C-terminal Eco28_RS27270 SM00487 DEAD-like helicases superfamily Eco28_RS27270 SM00490 helicase superfamily c-terminal domain Eco28_RS27270 SM00956 Eco28_RS27270 Eco28_RS27355 SM01219 Eco28_RS27355 Eco28_RS27460 SM00984 UDP binding domain Eco28_RS27485 SM00357 Cold shock protein domain Eco28_RS27485 SM00382 ATPases associated with a variety of cellular activities Eco28_RS27485 SM00959 Rho termination factor, N-terminal domain Eco28_RS27500 SM00487 DEAD-like helicases superfamily Eco28_RS27500 SM00490 helicase superfamily c-terminal domain Eco28_RS27570 SM00382 ATPases associated with a variety of cellular activities Eco28_RS27615 SM00345 helix_turn_helix gluconate operon transcriptional repressor Eco28_RS27615 SM00895 Eco28_RS27615 Eco28_RS27625 SM00354 helix_turn _helix lactose operon repressor Eco28_RS27645 SM00382 ATPases associated with a variety of cellular activities Eco28_RS27660 SM00382 ATPases associated with a variety of cellular activities Eco28_RS27665 SM00327 von Willebrand factor (vWF) type A domain Eco28_RS27675 SM00344 helix_turn_helix ASNC type Eco28_RS27685 SM01228 Eco28_RS27685 Eco28_RS27730 SM00382 ATPases associated with a variety of cellular activities Eco28_RS27770 SM00382 ATPases associated with a variety of cellular activities Eco28_RS27870 SM01234 Eco28_RS27870