locus-tag class description RG48_RS00005 PF12724 Flavodoxin domain RG48_RS00010 PF02386 Cation transport protein RG48_RS00015 PF01205 Uncharacterized protein family UPF0029 RG48_RS00015 PF09186 Domain of unknown function (DUF1949) RG48_RS00020 PF00557 Metallopeptidase family M24 RG48_RS00025 PF00378 Enoyl-CoA hydratase/isomerase RG48_RS00025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RG48_RS00025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RG48_RS00030 PF00108 Thiolase, N-terminal domain RG48_RS00030 PF02803 Thiolase, C-terminal domain RG48_RS00040 PF00175 Oxidoreductase NAD-binding domain RG48_RS00040 PF00970 Oxidoreductase FAD-binding domain RG48_RS00045 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RG48_RS00050 PF02357 Transcription termination factor nusG RG48_RS00055 PF01026 TatD related DNase RG48_RS00060 PF00902 Sec-independent protein translocase protein (TatC) RG48_RS00070 PF02416 mttA/Hcf106 family RG48_RS00075 PF03109 ABC1 family RG48_RS00080 PF02036 SCP-2 sterol transfer family RG48_RS00085 PF01209 ubiE/COQ5 methyltransferase family RG48_RS00090 PF02646 RmuC family RG48_RS00100 PF01048 Phosphorylase superfamily RG48_RS00105 PF01738 Dienelactone hydrolase family RG48_RS00110 PF08267 Cobalamin-independent synthase, N-terminal domain RG48_RS00110 PF01717 Cobalamin-independent synthase, Catalytic domain RG48_RS00115 PF03466 LysR substrate binding domain RG48_RS00115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS00120 PF00892 EamA-like transporter family RG48_RS00130 PF12146 Serine aminopeptidase, S33 RG48_RS00135 PF01810 LysE type translocator RG48_RS00140 PF01810 LysE type translocator RG48_RS00145 PF00570 HRDC domain RG48_RS00145 PF00271 Helicase conserved C-terminal domain RG48_RS00145 PF00270 DEAD/DEAH box helicase RG48_RS00145 PF16124 RecQ zinc-binding RG48_RS00145 PF09382 RQC domain RG48_RS00150 PF02253 Phospholipase A1 RG48_RS00155 PF03061 Thioesterase superfamily RG48_RS00160 PF00892 EamA-like transporter family RG48_RS00170 PF10947 Protein of unknown function (DUF2628) RG48_RS00175 PF01544 CorA-like Mg2+ transporter protein RG48_RS00185 PF09992 Phosphodiester glycosidase RG48_RS00190 PF13361 UvrD-like helicase C-terminal domain RG48_RS00190 PF00580 UvrD/REP helicase N-terminal domain RG48_RS00195 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS00200 PF02899 Phage integrase, N-terminal SAM-like domain RG48_RS00200 PF00589 Phage integrase family RG48_RS00205 PF04340 Protein of unknown function, DUF484 RG48_RS00210 PF01678 Diaminopimelate epimerase RG48_RS00215 PF13627 Prokaryotic lipoprotein-attachment site RG48_RS00225 PF01491 Frataxin-like domain RG48_RS00230 PF01295 Adenylate cyclase, class-I RG48_RS00230 PF12633 Adenylate cyclase NT domain RG48_RS00240 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RG48_RS00240 PF03900 Porphobilinogen deaminase, C-terminal domain RG48_RS00245 PF02602 Uroporphyrinogen-III synthase HemD RG48_RS00250 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase RG48_RS00255 PF07219 HemY protein N-terminus RG48_RS00255 PF07719 Tetratricopeptide repeat RG48_RS00260 PF00884 Sulfatase RG48_RS00290 PF00324 Amino acid permease RG48_RS00295 PF03808 Glycosyl transferase WecB/TagA/CpsF family RG48_RS00300 PF06899 WzyE protein, O-antigen assembly polymerase RG48_RS00305 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 RG48_RS00310 PF01943 Polysaccharide biosynthesis protein RG48_RS00315 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RG48_RS00325 PF00483 Nucleotidyl transferase RG48_RS00330 PF16363 GDP-mannose 4,6 dehydratase RG48_RS00335 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RG48_RS00335 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RG48_RS00335 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RG48_RS00340 PF02350 UDP-N-acetylglucosamine 2-epimerase RG48_RS00345 PF02706 Chain length determinant protein RG48_RS00350 PF00953 Glycosyl transferase family 4 RG48_RS00360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RG48_RS00360 PF07497 Rho termination factor, RNA-binding domain RG48_RS00360 PF07498 Rho termination factor, N-terminal domain RG48_RS00370 PF00085 Thioredoxin RG48_RS00375 PF00271 Helicase conserved C-terminal domain RG48_RS00375 PF00270 DEAD/DEAH box helicase RG48_RS00385 PF02541 Ppx/GppA phosphatase family RG48_RS00390 PF00580 UvrD/REP helicase N-terminal domain RG48_RS00390 PF13361 UvrD-like helicase C-terminal domain RG48_RS00395 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system RG48_RS00400 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system RG48_RS00410 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RG48_RS00410 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RG48_RS00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS00415 PF03466 LysR substrate binding domain RG48_RS00420 PF00585 C-terminal regulatory domain of Threonine dehydratase RG48_RS00420 PF00291 Pyridoxal-phosphate dependent enzyme RG48_RS00425 PF00920 Dehydratase family RG48_RS00430 PF01063 Amino-transferase class IV RG48_RS00440 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RG48_RS00440 PF00205 Thiamine pyrophosphate enzyme, central domain RG48_RS00440 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RG48_RS00445 PF08046 IlvGEDA operon leader peptide RG48_RS00450 PF13335 Magnesium chelatase, subunit ChlI C-terminal RG48_RS00450 PF01078 Magnesium chelatase, subunit ChlI RG48_RS00455 PF04219 Protein of unknown function, DUF RG48_RS00460 PF03466 LysR substrate binding domain RG48_RS00460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS00495 PF00392 Bacterial regulatory proteins, gntR family RG48_RS00495 PF07729 FCD domain RG48_RS00500 PF07690 Major Facilitator Superfamily RG48_RS00505 PF00356 Bacterial regulatory proteins, lacI family RG48_RS00510 PF00294 pfkB family carbohydrate kinase RG48_RS00515 PF13407 Periplasmic binding protein domain RG48_RS00520 PF02653 Branched-chain amino acid transport system / permease component RG48_RS00525 PF00005 ABC transporter RG48_RS00530 PF05025 RbsD / FucU transport protein family RG48_RS00535 PF02705 K+ potassium transporter RG48_RS00540 PF12592 Protein of unknown function (DUF3763) RG48_RS00540 PF07728 AAA domain (dynein-related subfamily) RG48_RS00540 PF17868 AAA lid domain RG48_RS00545 PF05762 VWA domain containing CoxE-like protein RG48_RS00550 PF03590 Aspartate-ammonia ligase RG48_RS00555 PF01037 Lrp/AsnC ligand binding domain RG48_RS00560 PF00258 Flavodoxin RG48_RS00565 PF01134 Glucose inhibited division protein A RG48_RS00565 PF13932 GidA associated domain RG48_RS00570 PF02527 rRNA small subunit methyltransferase G RG48_RS00575 PF03899 ATP synthase I chain RG48_RS00580 PF00119 ATP synthase A chain RG48_RS00585 PF00137 ATP synthase subunit C RG48_RS00590 PF00430 ATP synthase B/B' CF(0) RG48_RS00595 PF00213 ATP synthase delta (OSCP) subunit RG48_RS00600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RG48_RS00600 PF00306 ATP synthase alpha/beta chain, C terminal domain RG48_RS00600 PF02874 ATP synthase alpha/beta family, beta-barrel domain RG48_RS00605 PF00231 ATP synthase RG48_RS00610 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RG48_RS00610 PF02874 ATP synthase alpha/beta family, beta-barrel domain RG48_RS00615 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RG48_RS00615 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RG48_RS00625 PF12804 MobA-like NTP transferase domain RG48_RS00625 PF14602 Hexapeptide repeat of succinyl-transferase RG48_RS00625 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS00630 PF01380 SIS domain RG48_RS00635 PF12849 PBP superfamily domain RG48_RS00640 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS00645 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS00650 PF00005 ABC transporter RG48_RS00655 PF01895 PhoU domain RG48_RS00660 PF00874 PRD domain RG48_RS00660 PF03123 CAT RNA binding domain RG48_RS00665 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RG48_RS00665 PF02378 Phosphotransferase system, EIIC RG48_RS00665 PF00367 phosphotransferase system, EIIB RG48_RS00670 PF00232 Glycosyl hydrolase family 1 RG48_RS00675 PF02264 LamB porin RG48_RS00675 PF11471 Maltoporin periplasmic N-terminal extension RG48_RS00680 PF00756 Putative esterase RG48_RS00680 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RG48_RS00685 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RG48_RS00690 PF03691 Uncharacterised protein family (UPF0167) RG48_RS00700 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS00705 PF00860 Permease family RG48_RS00710 PF03358 NADPH-dependent FMN reductase RG48_RS00720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS00720 PF03466 LysR substrate binding domain RG48_RS00725 PF07690 Major Facilitator Superfamily RG48_RS00730 PF03222 Tryptophan/tyrosine permease family RG48_RS00735 PF01212 Beta-eliminating lyase RG48_RS00740 PF08053 Tryptophanase operon leader peptide RG48_RS00745 PF12631 MnmE helical domain RG48_RS00745 PF01926 50S ribosome-binding GTPase RG48_RS00745 PF10396 GTP-binding protein TrmE N-terminus RG48_RS00750 PF02096 60Kd inner membrane protein RG48_RS00750 PF14849 YidC periplasmic domain RG48_RS00755 PF01809 Putative membrane protein insertion efficiency factor RG48_RS00760 PF00825 Ribonuclease P RG48_RS00765 PF00468 Ribosomal protein L34 RG48_RS00775 PF08299 Bacterial dnaA protein helix-turn-helix RG48_RS00775 PF00308 Bacterial dnaA protein RG48_RS00775 PF11638 DnaA N-terminal domain RG48_RS00780 PF02768 DNA polymerase III beta subunit, C-terminal domain RG48_RS00780 PF00712 DNA polymerase III beta subunit, N-terminal domain RG48_RS00780 PF02767 DNA polymerase III beta subunit, central domain RG48_RS00785 PF02463 RecF/RecN/SMC N terminal domain RG48_RS00790 PF01751 Toprim domain RG48_RS00790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS00790 PF18053 DNA gyrase B subunit insert domain RG48_RS00790 PF00986 DNA gyrase B subunit, carboxyl terminus RG48_RS00790 PF00204 DNA gyrase B RG48_RS00795 PF06078 Bacterial protein of unknown function (DUF937) RG48_RS00810 PF07729 FCD domain RG48_RS00810 PF00392 Bacterial regulatory proteins, gntR family RG48_RS00815 PF05035 2-keto-3-deoxy-galactonokinase RG48_RS00820 PF01081 KDPG and KHG aldolase RG48_RS00825 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RG48_RS00825 PF13378 Enolase C-terminal domain-like RG48_RS00830 PF07690 Major Facilitator Superfamily RG48_RS00835 PF01494 FAD binding domain RG48_RS00840 PF12566 Protein of unknown function (DUF3748) RG48_RS00840 PF07676 WD40-like Beta Propeller Repeat RG48_RS00845 PF07119 Protein of unknown function (DUF1375) RG48_RS00850 PF00011 Hsp20/alpha crystallin family RG48_RS00855 PF00011 Hsp20/alpha crystallin family RG48_RS00865 PF02080 TrkA-C domain RG48_RS00865 PF06826 Predicted Permease Membrane Region RG48_RS00875 PF02378 Phosphotransferase system, EIIC RG48_RS00875 PF00367 phosphotransferase system, EIIB RG48_RS00880 PF02056 Family 4 glycosyl hydrolase RG48_RS00880 PF11975 Family 4 glycosyl hydrolase C-terminal domain RG48_RS00885 PF02311 AraC-like ligand binding domain RG48_RS00885 PF12833 Helix-turn-helix domain RG48_RS00890 PF00474 Sodium:solute symporter family RG48_RS00895 PF16347 Domain of unknown function (DUF4976) RG48_RS00895 PF00884 Sulfatase RG48_RS00905 PF02656 Domain of unknown function (DUF202) RG48_RS00910 PF02656 Domain of unknown function (DUF202) RG48_RS00920 PF07690 Major Facilitator Superfamily RG48_RS00930 PF13939 Toxin TisB, type I toxin-antitoxin system RG48_RS00950 PF08049 IlvB leader peptide RG48_RS00955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RG48_RS00955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RG48_RS00955 PF00205 Thiamine pyrophosphate enzyme, central domain RG48_RS00960 PF01842 ACT domain RG48_RS00965 PF00072 Response regulator receiver domain RG48_RS00965 PF00196 Bacterial regulatory proteins, luxR family RG48_RS00970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS00970 PF07730 Histidine kinase RG48_RS00970 PF05231 MASE1 RG48_RS00975 PF07690 Major Facilitator Superfamily RG48_RS00980 PF07690 Major Facilitator Superfamily RG48_RS00985 PF13382 Adenine deaminase C-terminal domain RG48_RS00985 PF01979 Amidohydrolase family RG48_RS00990 PF00860 Permease family RG48_RS00995 PF06711 Protein of unknown function (DUF1198) RG48_RS01005 PF07690 Major Facilitator Superfamily RG48_RS01025 PF03180 NLPA lipoprotein RG48_RS01030 PF00892 EamA-like transporter family RG48_RS01035 PF07690 Major Facilitator Superfamily RG48_RS01045 PF06755 CbtA_toxin of type IV toxin-antitoxin system RG48_RS01050 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A RG48_RS01055 PF06174 Protein of unknown function (DUF987) RG48_RS01060 PF04002 RadC-like JAB domain RG48_RS01065 PF03230 Antirestriction protein RG48_RS01070 PF06006 Bacterial protein of unknown function (DUF905) RG48_RS01090 PF08220 DeoR-like helix-turn-helix domain RG48_RS01090 PF13280 WYL domain RG48_RS01095 PF06067 Domain of unknown function (DUF932) RG48_RS01100 PF01926 50S ribosome-binding GTPase RG48_RS01120 PF13276 HTH-like domain RG48_RS01120 PF00665 Integrase core domain RG48_RS01120 PF13333 Integrase core domain RG48_RS01125 PF01527 Transposase RG48_RS01130 PF00872 Transposase, Mutator family RG48_RS01155 PF12728 Helix-turn-helix domain RG48_RS01160 PF00011 Hsp20/alpha crystallin family RG48_RS01165 PF07724 AAA domain (Cdc48 subfamily) RG48_RS01165 PF10431 C-terminal, D2-small domain, of ClpB protein RG48_RS01165 PF02861 Clp amino terminal domain, pathogenicity island component RG48_RS01165 PF17871 AAA lid domain RG48_RS01165 PF00004 ATPase family associated with various cellular activities (AAA) RG48_RS01175 PF01434 Peptidase family M41 RG48_RS01175 PF06480 FtsH Extracellular RG48_RS01175 PF00004 ATPase family associated with various cellular activities (AAA) RG48_RS01175 PF17862 AAA+ lid domain RG48_RS01205 PF00085 Thioredoxin RG48_RS01210 PF02254 TrkA-N domain RG48_RS01210 PF00999 Sodium/hydrogen exchanger family RG48_RS01210 PF02080 TrkA-C domain RG48_RS01225 PF13180 PDZ domain RG48_RS01230 PF01609 Transposase DDE domain RG48_RS01230 PF05598 Transposase domain (DUF772) RG48_RS01235 PF00665 Integrase core domain RG48_RS01235 PF13333 Integrase core domain RG48_RS01235 PF13276 HTH-like domain RG48_RS01245 PF01527 Transposase RG48_RS01260 PF06508 Queuosine biosynthesis protein QueC RG48_RS01280 PF13286 Phosphohydrolase-associated domain RG48_RS01280 PF01966 HD domain RG48_RS01290 PF00589 Phage integrase family RG48_RS01290 PF14659 Phage integrase, N-terminal SAM-like domain RG48_RS01290 PF13356 Arm DNA-binding domain RG48_RS01305 PF01055 Glycosyl hydrolases family 31 RG48_RS01305 PF13802 Galactose mutarotase-like RG48_RS01310 PF05170 AsmA family RG48_RS01315 PF00860 Permease family RG48_RS01320 PF03616 Sodium/glutamate symporter RG48_RS01325 PF00271 Helicase conserved C-terminal domain RG48_RS01325 PF17191 RecG wedge domain RG48_RS01325 PF00270 DEAD/DEAH box helicase RG48_RS01330 PF12105 SpoU, rRNA methylase, C-terminal RG48_RS01330 PF00588 SpoU rRNA Methylase family RG48_RS01335 PF04607 Region found in RelA / SpoT proteins RG48_RS01335 PF13291 ACT domain RG48_RS01335 PF02824 TGS domain RG48_RS01340 PF01192 RNA polymerase Rpb6 RG48_RS01345 PF00625 Guanylate kinase RG48_RS01350 PF03120 NAD-dependent DNA ligase OB-fold domain RG48_RS01350 PF01653 NAD-dependent DNA ligase adenylation domain RG48_RS01355 PF03458 UPF0126 domain RG48_RS01365 PF03755 YicC-like family, N-terminal region RG48_RS01365 PF08340 Domain of unknown function (DUF1732) RG48_RS01375 PF03725 3' exoribonuclease family, domain 2 RG48_RS01375 PF01138 3' exoribonuclease family, domain 1 RG48_RS01380 PF00156 Phosphoribosyl transferase domain RG48_RS01385 PF00440 Bacterial regulatory proteins, tetR family RG48_RS01390 PF00692 dUTPase RG48_RS01395 PF02441 Flavoprotein RG48_RS01395 PF04127 DNA / pantothenate metabolism flavoprotein RG48_RS01400 PF04002 RadC-like JAB domain RG48_RS01405 PF00830 Ribosomal L28 family RG48_RS01410 PF00471 Ribosomal protein L33 RG48_RS01415 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RG48_RS01415 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RG48_RS01415 PF06827 Zinc finger found in FPG and IleRS RG48_RS01420 PF01467 Cytidylyltransferase-like RG48_RS01425 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RG48_RS01430 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RG48_RS01435 PF13439 Glycosyltransferase Family 4 RG48_RS01435 PF00534 Glycosyl transferases group 1 RG48_RS01445 PF01501 Glycosyl transferase family 8 RG48_RS01445 PF08437 Glycosyl transferase family 8 C-terminal RG48_RS01450 PF01501 Glycosyl transferase family 8 RG48_RS01450 PF08437 Glycosyl transferase family 8 C-terminal RG48_RS01455 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) RG48_RS01460 PF08437 Glycosyl transferase family 8 C-terminal RG48_RS01460 PF01501 Glycosyl transferase family 8 RG48_RS01465 PF00535 Glycosyl transferase family 2 RG48_RS01470 PF04932 O-Antigen ligase RG48_RS01475 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RG48_RS01480 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RG48_RS01485 PF01370 NAD dependent epimerase/dehydratase family RG48_RS01490 PF09612 Bacterial protein of unknown function (HtrL_YibB) RG48_RS01495 PF00155 Aminotransferase class I and II RG48_RS01500 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS01500 PF00107 Zinc-binding dehydrogenase RG48_RS01505 PF00535 Glycosyl transferase family 2 RG48_RS01510 PF04748 Divergent polysaccharide deacetylase RG48_RS01515 PF01551 Peptidase family M23 RG48_RS01520 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RG48_RS01520 PF01676 Metalloenzyme superfamily RG48_RS01530 PF00581 Rhodanese-like domain RG48_RS01535 PF00462 Glutaredoxin RG48_RS01540 PF02556 Preprotein translocase subunit SecB RG48_RS01545 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RG48_RS01545 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RG48_RS01550 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS01550 PF06426 Serine acetyltransferase, N-terminal RG48_RS01555 PF00588 SpoU rRNA Methylase family RG48_RS01560 PF01070 FMN-dependent dehydrogenase RG48_RS01565 PF00392 Bacterial regulatory proteins, gntR family RG48_RS01565 PF07729 FCD domain RG48_RS01570 PF02652 L-lactate permease RG48_RS01575 PF05658 Head domain of trimeric autotransporter adhesin RG48_RS01575 PF05662 Coiled stalk of trimeric autotransporter adhesin RG48_RS01575 PF13018 Extended Signal Peptide of Type V secretion system RG48_RS01575 PF03895 YadA-like membrane anchor domain RG48_RS01580 PF11622 Protein of unknown function (DUF3251) RG48_RS01590 PF10928 Protein of unknown function (DUF2810) RG48_RS01600 PF05068 Mannitol repressor RG48_RS01605 PF08125 Mannitol dehydrogenase C-terminal domain RG48_RS01605 PF01232 Mannitol dehydrogenase Rossmann domain RG48_RS01610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS01610 PF02378 Phosphotransferase system, EIIC RG48_RS01610 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS01615 PF11742 Protein of unknown function (DUF3302) RG48_RS01620 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS01620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS01625 PF15596 Immunity protein 57 RG48_RS01650 PF03527 RHS protein RG48_RS01655 PF03130 PBS lyase HEAT-like repeat RG48_RS01660 PF15606 Bacterial toxin 34 RG48_RS01660 PF05593 RHS Repeat RG48_RS01660 PF03527 RHS protein RG48_RS01665 PF00043 Glutathione S-transferase, C-terminal domain RG48_RS01665 PF13417 Glutathione S-transferase, N-terminal domain RG48_RS01670 PF12390 Selenocysteine synthase N terminal RG48_RS01670 PF03841 L-seryl-tRNA selenium transferase RG48_RS01675 PF00009 Elongation factor Tu GTP binding domain RG48_RS01675 PF03144 Elongation factor Tu domain 2 RG48_RS01675 PF09106 Elongation factor SelB, winged helix RG48_RS01675 PF09107 Elongation factor SelB, winged helix RG48_RS01680 PF00465 Iron-containing alcohol dehydrogenase RG48_RS01685 PF00171 Aldehyde dehydrogenase family RG48_RS01695 PF11742 Protein of unknown function (DUF3302) RG48_RS01700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS01700 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS01705 PF03466 LysR substrate binding domain RG48_RS01705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS01710 PF06629 MltA-interacting protein MipA RG48_RS01715 PF00596 Class II Aldolase and Adducin N-terminal domain RG48_RS01725 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RG48_RS01725 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RG48_RS01730 PF03480 Bacterial extracellular solute-binding protein, family 7 RG48_RS01735 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component RG48_RS01740 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component RG48_RS01745 PF04074 YhcH/YjgK/YiaL RG48_RS01750 PF02615 Malate/L-lactate dehydrogenase RG48_RS01755 PF09339 IclR helix-turn-helix domain RG48_RS01755 PF01614 Bacterial transcriptional regulator RG48_RS01760 PF13247 4Fe-4S dicluster domain RG48_RS01765 PF00155 Aminotransferase class I and II RG48_RS01770 PF00128 Alpha amylase, catalytic domain RG48_RS01775 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RG48_RS01785 PF02653 Branched-chain amino acid transport system / permease component RG48_RS01790 PF00005 ABC transporter RG48_RS01795 PF13407 Periplasmic binding protein domain RG48_RS01805 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RG48_RS01805 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RG48_RS01810 PF05360 yiaA/B two helix domain RG48_RS01815 PF05360 yiaA/B two helix domain RG48_RS01820 PF01757 Acyltransferase family RG48_RS01825 PF13983 YsaB-like lipoprotein RG48_RS01830 PF02091 Glycyl-tRNA synthetase alpha subunit RG48_RS01835 PF02092 Glycyl-tRNA synthetase beta subunit RG48_RS01835 PF05746 DALR anticodon binding domain RG48_RS01845 PF00665 Integrase core domain RG48_RS01845 PF13333 Integrase core domain RG48_RS01845 PF13276 HTH-like domain RG48_RS01850 PF01848 Hok/gef family RG48_RS01855 PF00313 'Cold-shock' DNA-binding domain RG48_RS01860 PF01381 Helix-turn-helix RG48_RS01865 PF11254 Protein of unknown function (DUF3053) RG48_RS01870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RG48_RS01870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RG48_RS01875 PF00691 OmpA family RG48_RS01875 PF13488 Glycine zipper RG48_RS01880 PF01568 Molydopterin dinucleotide binding domain RG48_RS01880 PF18364 Molybdopterin oxidoreductase N-terminal domain RG48_RS01880 PF00384 Molybdopterin oxidoreductase RG48_RS01885 PF00583 Acetyltransferase (GNAT) family RG48_RS01890 PF03352 Methyladenine glycosylase RG48_RS01895 PF03797 Autotransporter beta-domain RG48_RS01905 PF07690 Major Facilitator Superfamily RG48_RS01910 PF00884 Sulfatase RG48_RS01910 PF08019 Phosphoethanolamine transferase EptA/EptB RG48_RS01930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS01940 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS01945 PF12911 N-terminal TM domain of oligopeptide transport permease C RG48_RS01945 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS01950 PF00005 ABC transporter RG48_RS01950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RG48_RS01955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RG48_RS01955 PF00005 ABC transporter RG48_RS01960 PF03222 Tryptophan/tyrosine permease family RG48_RS01975 PF13940 Toxin Ldr, type I toxin-antitoxin system RG48_RS01980 PF11658 Cellulose biosynthesis protein BcsG RG48_RS01985 PF11120 Cellulose biosynthesis protein BcsF RG48_RS01990 PF10995 Cellulose biosynthesis GIL RG48_RS01995 PF10945 Cellulose biosynthesis protein BcsR RG48_RS02000 PF06564 Cellulose biosynthesis protein BcsQ RG48_RS02005 PF03552 Cellulose synthase RG48_RS02005 PF00535 Glycosyl transferase family 2 RG48_RS02005 PF07238 PilZ domain RG48_RS02010 PF03170 Bacterial cellulose synthase subunit RG48_RS02015 PF01270 Glycosyl hydrolases family 8 RG48_RS02020 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) RG48_RS02025 PF00672 HAMP domain RG48_RS02025 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS02025 PF17154 Gammaproteobacterial periplasmic sensor domain RG48_RS02025 PF00563 EAL domain RG48_RS02035 PF00375 Sodium:dicarboxylate symporter family RG48_RS02045 PF05193 Peptidase M16 inactive domain RG48_RS02045 PF00675 Insulinase (Peptidase family M16) RG48_RS02050 PF00294 pfkB family carbohydrate kinase RG48_RS02060 PF00563 EAL domain RG48_RS02065 PF05170 AsmA family RG48_RS02070 PF00083 Sugar (and other) transporter RG48_RS02070 PF07690 Major Facilitator Superfamily RG48_RS02075 PF03631 Virulence factor BrkB RG48_RS02080 PF03466 LysR substrate binding domain RG48_RS02080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS02085 PF00196 Bacterial regulatory proteins, luxR family RG48_RS02090 PF01204 Trehalase RG48_RS02095 PF00034 Cytochrome c RG48_RS02095 PF03150 Di-haem cytochrome c peroxidase RG48_RS02095 PF14376 Haem-binding domain RG48_RS02100 PF00282 Pyridoxal-dependent decarboxylase conserved domain RG48_RS02105 PF12833 Helix-turn-helix domain RG48_RS02110 PF12833 Helix-turn-helix domain RG48_RS02120 PF00873 AcrB/AcrD/AcrF family RG48_RS02125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS02125 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS02135 PF00196 Bacterial regulatory proteins, luxR family RG48_RS02140 PF03729 Short repeat of unknown function (DUF308) RG48_RS02145 PF06411 HdeA/HdeB family RG48_RS02150 PF06411 HdeA/HdeB family RG48_RS02155 PF02308 MgtC family RG48_RS02160 PF00196 Bacterial regulatory proteins, luxR family RG48_RS02170 PF03843 Outer membrane lipoprotein Slp family RG48_RS02180 PF03960 ArsC family RG48_RS02185 PF02040 Arsenical pump membrane protein RG48_RS02190 PF01022 Bacterial regulatory protein, arsR family RG48_RS02205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RG48_RS02205 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS02210 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RG48_RS02215 PF01432 Peptidase family M3 RG48_RS02220 PF04445 Putative SAM-dependent methyltransferase RG48_RS02225 PF00854 POT family RG48_RS02235 PF00582 Universal stress protein family RG48_RS02240 PF10625 Universal stress protein B (UspB) RG48_RS02250 PF01384 Phosphate transporter family RG48_RS02260 PF10951 Protein of unknown function (DUF2776) RG48_RS02275 PF13258 Domain of unknown function (DUF4049) RG48_RS02280 PF13258 Domain of unknown function (DUF4049) RG48_RS02285 PF13533 Biotin-lipoyl like RG48_RS02290 PF00005 ABC transporter RG48_RS02300 PF01609 Transposase DDE domain RG48_RS02300 PF13808 DDE_Tnp_1-associated RG48_RS02305 PF03130 PBS lyase HEAT-like repeat RG48_RS02310 PF15631 NTF2 fold immunity protein RG48_RS02315 PF05593 RHS Repeat RG48_RS02315 PF03527 RHS protein RG48_RS02315 PF14220 Domain of unknown function (DUF4329) RG48_RS02320 PF08753 NikR C terminal nickel binding domain RG48_RS02320 PF01402 Ribbon-helix-helix protein, copG family RG48_RS02325 PF00005 ABC transporter RG48_RS02330 PF00005 ABC transporter RG48_RS02335 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS02340 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS02345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS02350 PF01648 4'-phosphopantetheinyl transferase superfamily RG48_RS02355 PF01594 AI-2E family transporter RG48_RS02360 PF07690 Major Facilitator Superfamily RG48_RS02365 PF08786 DcrB RG48_RS02370 PF02592 Putative vitamin uptake transporter RG48_RS02375 PF01206 Sulfurtransferase TusA RG48_RS02380 PF00403 Heavy-metal-associated domain RG48_RS02385 PF07947 YhhN family RG48_RS02390 PF10694 Protein of unknown function (DUF2500) RG48_RS02395 PF06611 Protein of unknown function (DUF1145) RG48_RS02405 PF02881 SRP54-type protein, helical bundle domain RG48_RS02405 PF00448 SRP54-type protein, GTPase domain RG48_RS02410 PF00005 ABC transporter RG48_RS02415 PF02687 FtsX-like permease family RG48_RS02415 PF18075 FtsX extracellular domain RG48_RS02420 PF04542 Sigma-70 region 2 RG48_RS02420 PF04545 Sigma-70, region 4 RG48_RS02425 PF13458 Periplasmic binding protein RG48_RS02430 PF12568 Acetyltransferase (GNAT) domain, PanZ RG48_RS02440 PF13458 Periplasmic binding protein RG48_RS02445 PF02653 Branched-chain amino acid transport system / permease component RG48_RS02450 PF11862 Domain of unknown function (DUF3382) RG48_RS02450 PF02653 Branched-chain amino acid transport system / permease component RG48_RS02455 PF12399 Branched-chain amino acid ATP-binding cassette transporter RG48_RS02455 PF00005 ABC transporter RG48_RS02460 PF00005 ABC transporter RG48_RS02470 PF13416 Bacterial extracellular solute-binding protein RG48_RS02475 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS02480 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS02485 PF00005 ABC transporter RG48_RS02485 PF17912 MalK OB fold domain RG48_RS02490 PF03009 Glycerophosphoryl diester phosphodiesterase family RG48_RS02495 PF10956 Protein of unknown function (DUF2756) RG48_RS02505 PF15567 Immunity protein 35 RG48_RS02520 PF05638 Type VI secretion system effector, Hcp RG48_RS02525 PF00583 Acetyltransferase (GNAT) family RG48_RS02530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RG48_RS02530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RG48_RS02535 PF17954 Quercetinase C-terminal cupin domain RG48_RS02535 PF02678 Pirin RG48_RS02540 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RG48_RS02540 PF00356 Bacterial regulatory proteins, lacI family RG48_RS02545 PF01202 Shikimate kinase RG48_RS02550 PF02447 GntP family permease RG48_RS02555 PF01914 MarC family integral membrane protein RG48_RS02560 PF01118 Semialdehyde dehydrogenase, NAD binding domain RG48_RS02560 PF02774 Semialdehyde dehydrogenase, dimerisation domain RG48_RS02565 PF02806 Alpha amylase, C-terminal all-beta domain RG48_RS02565 PF00128 Alpha amylase, catalytic domain RG48_RS02565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RG48_RS02570 PF18390 Glycogen debranching enzyme C-terminal domain RG48_RS02570 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RG48_RS02570 PF00128 Alpha amylase, catalytic domain RG48_RS02575 PF00483 Nucleotidyl transferase RG48_RS02580 PF00534 Glycosyl transferases group 1 RG48_RS02580 PF08323 Starch synthase catalytic domain RG48_RS02585 PF00343 Carbohydrate phosphorylase RG48_RS02610 PF01266 FAD dependent oxidoreductase RG48_RS02610 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RG48_RS02615 PF00581 Rhodanese-like domain RG48_RS02620 PF01694 Rhomboid family RG48_RS02620 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease RG48_RS02625 PF00455 DeoR C terminal sensor domain RG48_RS02625 PF08220 DeoR-like helix-turn-helix domain RG48_RS02630 PF06956 Regulator of RNA terminal phosphate cyclase RG48_RS02630 PF00158 Sigma-54 interaction domain RG48_RS02635 PF01139 tRNA-splicing ligase RtcB RG48_RS02645 PF00196 Bacterial regulatory proteins, luxR family RG48_RS02645 PF17874 MalT-like TPR region RG48_RS02650 PF00343 Carbohydrate phosphorylase RG48_RS02655 PF02446 4-alpha-glucanotransferase RG48_RS02660 PF02447 GntP family permease RG48_RS02665 PF01106 NifU-like domain RG48_RS02665 PF01521 Iron-sulphur cluster biosynthesis RG48_RS02670 PF00156 Phosphoribosyl transferase domain RG48_RS02675 PF00561 alpha/beta hydrolase fold RG48_RS02680 PF04754 Putative transposase, YhgA-like RG48_RS02690 PF09012 FeoC like transcriptional regulator RG48_RS02695 PF17910 FeoB cytosolic helical domain RG48_RS02695 PF07664 Ferrous iron transport protein B C terminus RG48_RS02695 PF02421 Ferrous iron transport protein B RG48_RS02695 PF07670 Nucleoside recognition RG48_RS02700 PF04023 FeoA domain RG48_RS02710 PF16921 Tex protein YqgF-like domain RG48_RS02710 PF17674 HHH domain RG48_RS02710 PF09371 Tex-like protein N-terminal domain RG48_RS02710 PF00575 S1 RNA binding domain RG48_RS02715 PF03449 Transcription elongation factor, N-terminal RG48_RS02715 PF01272 Transcription elongation factor, GreA/GreB, C-term RG48_RS02725 PF00072 Response regulator receiver domain RG48_RS02725 PF00486 Transcriptional regulatory protein, C terminal RG48_RS02730 PF00672 HAMP domain RG48_RS02730 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS02730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS02735 PF01293 Phosphoenolpyruvate carboxykinase RG48_RS02745 PF13687 Domain of unknown function (DUF4153) RG48_RS02750 PF01430 Hsp33 protein RG48_RS02755 PF01479 S4 domain RG48_RS02760 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS02765 PF07095 Intracellular growth attenuator protein IgaA RG48_RS02770 PF00293 NUDIX domain RG48_RS02775 PF00905 Penicillin binding protein transpeptidase domain RG48_RS02775 PF17092 Penicillin-binding protein OB-like domain RG48_RS02775 PF00912 Transglycosylase RG48_RS02785 PF05137 Fimbrial assembly protein (PilN) RG48_RS02795 PF10748 DNA utilization proteins HofP RG48_RS02800 PF03958 Bacterial type II/III secretion system short domain RG48_RS02800 PF00263 Bacterial type II and III secretion system protein RG48_RS02805 PF01202 Shikimate kinase RG48_RS02810 PF01761 3-dehydroquinate synthase RG48_RS02815 PF05036 Sporulation related domain RG48_RS02820 PF02086 D12 class N6 adenine-specific DNA methyltransferase RG48_RS02825 PF00834 Ribulose-phosphate 3 epimerase family RG48_RS02830 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS02835 PF00579 tRNA synthetases class I (W and Y) RG48_RS02845 PF14502 Helix-turn-helix domain RG48_RS02845 PF14503 YhfZ C-terminal domain RG48_RS02855 PF01168 Alanine racemase, N-terminal domain RG48_RS02860 PF01676 Metalloenzyme superfamily RG48_RS02865 PF02126 Phosphotriesterase family RG48_RS02870 PF10941 Protein of unknown function DUF2620 RG48_RS02875 PF10797 Protein of unknown function RG48_RS02880 PF00155 Aminotransferase class I and II RG48_RS02885 PF00392 Bacterial regulatory proteins, gntR family RG48_RS02885 PF07702 UTRA domain RG48_RS02890 PF00294 pfkB family carbohydrate kinase RG48_RS02895 PF01261 Xylose isomerase-like TIM barrel RG48_RS02900 PF01261 Xylose isomerase-like TIM barrel RG48_RS02905 PF01380 SIS domain RG48_RS02910 PF13520 Amino acid permease RG48_RS02915 PF13978 Protein of unknown function (DUF4223) RG48_RS02920 PF14824 Sirohaem biosynthesis protein central RG48_RS02920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RG48_RS02920 PF10414 Sirohaem synthase dimerisation region RG48_RS02925 PF01226 Formate/nitrite transporter RG48_RS02930 PF13806 Rieske-like [2Fe-2S] domain RG48_RS02935 PF18267 Rubredoxin NAD+ reductase C-terminal domain RG48_RS02935 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RG48_RS02935 PF04324 BFD-like [2Fe-2S] binding domain RG48_RS02935 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS02935 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RG48_RS02945 PF07690 Major Facilitator Superfamily RG48_RS02950 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RG48_RS02955 PF10832 Protein of unknown function (DUF2559) RG48_RS02960 PF02661 Fic/DOC family RG48_RS02965 PF00117 Glutamine amidotransferase class-I RG48_RS02970 PF00202 Aminotransferase class-III RG48_RS02975 PF12805 FUSC-like inner membrane protein yccS RG48_RS02980 PF13545 Crp-like helix-turn-helix domain RG48_RS02980 PF00027 Cyclic nucleotide-binding domain RG48_RS02990 PF02566 OsmC-like protein RG48_RS02995 PF00485 Phosphoribulokinase / Uridine kinase family RG48_RS03000 PF06794 Uncharacterised protein family (UPF0270) RG48_RS03005 PF00561 alpha/beta hydrolase fold RG48_RS03010 PF12848 ABC transporter RG48_RS03010 PF00005 ABC transporter RG48_RS03015 PF02525 Flavodoxin-like fold RG48_RS03020 PF02254 TrkA-N domain RG48_RS03020 PF00999 Sodium/hydrogen exchanger family RG48_RS03025 PF09526 Probable metal-binding protein (DUF2387) RG48_RS03030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RG48_RS03035 PF04102 SlyX RG48_RS03040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RG48_RS03040 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RG48_RS03045 PF08348 YheO-like PAS domain RG48_RS03045 PF13309 HTH domain RG48_RS03050 PF02635 DsrE/DsrF-like family RG48_RS03055 PF02635 DsrE/DsrF-like family RG48_RS03060 PF04077 DsrH like protein RG48_RS03065 PF00164 Ribosomal protein S12/S23 RG48_RS03070 PF00177 Ribosomal protein S7p/S5e RG48_RS03075 PF14492 Elongation Factor G, domain II RG48_RS03075 PF03764 Elongation factor G, domain IV RG48_RS03075 PF00679 Elongation factor G C-terminus RG48_RS03075 PF03144 Elongation factor Tu domain 2 RG48_RS03075 PF00009 Elongation factor Tu GTP binding domain RG48_RS03080 PF00009 Elongation factor Tu GTP binding domain RG48_RS03080 PF03143 Elongation factor Tu C-terminal domain RG48_RS03080 PF03144 Elongation factor Tu domain 2 RG48_RS03085 PF02839 Carbohydrate binding domain RG48_RS03090 PF04324 BFD-like [2Fe-2S] binding domain RG48_RS03095 PF00210 Ferritin-like domain RG48_RS03100 PF01478 Type IV leader peptidase family RG48_RS03105 PF04612 Type II secretion system (T2SS), protein M RG48_RS03110 PF05134 Type II secretion system (T2SS), protein L RG48_RS03110 PF12693 GspL periplasmic domain RG48_RS03115 PF03934 Type II secretion system (T2SS), protein K RG48_RS03120 PF07963 Prokaryotic N-terminal methylation motif RG48_RS03120 PF11612 Type II secretion system (T2SS), protein J RG48_RS03125 PF02501 Type II secretion system (T2SS), protein I RG48_RS03125 PF07963 Prokaryotic N-terminal methylation motif RG48_RS03130 PF12019 Type II transport protein GspH RG48_RS03130 PF07963 Prokaryotic N-terminal methylation motif RG48_RS03140 PF00437 Type II/IV secretion system protein RG48_RS03145 PF00263 Bacterial type II and III secretion system protein RG48_RS03145 PF03958 Bacterial type II/III secretion system short domain RG48_RS03150 PF11356 Type II secretion system protein C RG48_RS03155 PF01471 Putative peptidoglycan binding domain RG48_RS03155 PF13401 AAA domain RG48_RS03165 PF00338 Ribosomal protein S10p/S20e RG48_RS03170 PF00297 Ribosomal protein L3 RG48_RS03175 PF00573 Ribosomal protein L4/L1 family RG48_RS03180 PF00276 Ribosomal protein L23 RG48_RS03185 PF03947 Ribosomal Proteins L2, C-terminal domain RG48_RS03185 PF00181 Ribosomal Proteins L2, RNA binding domain RG48_RS03190 PF00203 Ribosomal protein S19 RG48_RS03195 PF00237 Ribosomal protein L22p/L17e RG48_RS03200 PF07650 KH domain RG48_RS03200 PF00189 Ribosomal protein S3, C-terminal domain RG48_RS03205 PF00252 Ribosomal protein L16p/L10e RG48_RS03210 PF00831 Ribosomal L29 protein RG48_RS03215 PF00366 Ribosomal protein S17 RG48_RS03220 PF00238 Ribosomal protein L14p/L23e RG48_RS03225 PF00467 KOW motif RG48_RS03225 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RG48_RS03230 PF00281 Ribosomal protein L5 RG48_RS03230 PF00673 ribosomal L5P family C-terminus RG48_RS03235 PF00253 Ribosomal protein S14p/S29e RG48_RS03240 PF00410 Ribosomal protein S8 RG48_RS03245 PF00347 Ribosomal protein L6 RG48_RS03250 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RG48_RS03255 PF03719 Ribosomal protein S5, C-terminal domain RG48_RS03255 PF00333 Ribosomal protein S5, N-terminal domain RG48_RS03260 PF00327 Ribosomal protein L30p/L7e RG48_RS03265 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RG48_RS03270 PF00344 SecY translocase RG48_RS03275 PF00444 Ribosomal protein L36 RG48_RS03280 PF00416 Ribosomal protein S13/S18 RG48_RS03285 PF00411 Ribosomal protein S11 RG48_RS03290 PF00163 Ribosomal protein S4/S9 N-terminal domain RG48_RS03290 PF01479 S4 domain RG48_RS03295 PF01000 RNA polymerase Rpb3/RpoA insert domain RG48_RS03295 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RG48_RS03295 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RG48_RS03300 PF01196 Ribosomal protein L17 RG48_RS03305 PF09350 Domain of unknown function (DUF1992) RG48_RS03310 PF13411 MerR HTH family regulatory protein RG48_RS03315 PF03889 Alternative ribosome-rescue factor A RG48_RS03320 PF01741 Large-conductance mechanosensitive channel, MscL RG48_RS03325 PF02080 TrkA-C domain RG48_RS03325 PF02254 TrkA-N domain RG48_RS03330 PF01189 16S rRNA methyltransferase RsmB/F RG48_RS03330 PF01029 NusB family RG48_RS03335 PF00551 Formyl transferase RG48_RS03335 PF02911 Formyl transferase, C-terminal domain RG48_RS03340 PF01327 Polypeptide deformylase RG48_RS03345 PF02481 DNA recombination-mediator protein A RG48_RS03345 PF17782 DprA winged helix domain RG48_RS03350 PF04361 Protein of unknown function (DUF494) RG48_RS03355 PF01396 Topoisomerase DNA binding C4 zinc finger RG48_RS03360 PF01300 Telomere recombination RG48_RS03365 PF01488 Shikimate / quinate 5-dehydrogenase RG48_RS03365 PF08501 Shikimate dehydrogenase substrate binding domain RG48_RS03365 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RG48_RS03370 PF07369 Protein of unknown function (DUF1488) RG48_RS03375 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS03410 PF00005 ABC transporter RG48_RS03415 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS03420 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS03425 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS03435 PF00873 AcrB/AcrD/AcrF family RG48_RS03440 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS03440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS03450 PF08361 MAATS-type transcriptional repressor, C-terminal region RG48_RS03450 PF00440 Bacterial regulatory proteins, tetR family RG48_RS03455 PF10831 Protein of unknown function (DUF2556) RG48_RS03460 PF01555 DNA methylase RG48_RS03465 PF02954 Bacterial regulatory protein, Fis family RG48_RS03470 PF01207 Dihydrouridine synthase (Dus) RG48_RS03480 PF00474 Sodium:solute symporter family RG48_RS03485 PF06196 Protein of unknown function (DUF997) RG48_RS03490 PF00289 Biotin carboxylase, N-terminal domain RG48_RS03490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RG48_RS03490 PF02785 Biotin carboxylase C-terminal domain RG48_RS03495 PF00364 Biotin-requiring enzyme RG48_RS03505 PF01794 Ferric reductase like transmembrane component RG48_RS03510 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS03510 PF00107 Zinc-binding dehydrogenase RG48_RS03515 PF17157 Gammaproteobacterial periplasmic sensor domain RG48_RS03515 PF00563 EAL domain RG48_RS03515 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS03535 PF04085 rod shape-determining protein MreC RG48_RS03540 PF04093 rod shape-determining protein MreD RG48_RS03545 PF02545 Maf-like protein RG48_RS03550 PF00575 S1 RNA binding domain RG48_RS03550 PF10150 Ribonuclease E/G family RG48_RS03555 PF13116 Protein of unknown function RG48_RS03555 PF13502 AsmA-like C-terminal region RG48_RS03570 PF01523 Putative modulator of DNA gyrase RG48_RS03575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS03575 PF03466 LysR substrate binding domain RG48_RS03580 PF07869 Protein of unknown function (DUF1656) RG48_RS03585 PF13533 Biotin-lipoyl like RG48_RS03590 PF04632 Fusaric acid resistance protein family RG48_RS03595 PF01337 Barstar (barnase inhibitor) RG48_RS03600 PF07338 Protein of unknown function (DUF1471) RG48_RS03605 PF02863 Arginine repressor, C-terminal domain RG48_RS03605 PF01316 Arginine repressor, DNA binding domain RG48_RS03610 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RG48_RS03610 PF00056 lactate/malate dehydrogenase, NAD binding domain RG48_RS03615 PF13180 PDZ domain RG48_RS03620 PF13180 PDZ domain RG48_RS03620 PF00595 PDZ domain RG48_RS03625 PF06295 Protein of unknown function (DUF1043) RG48_RS03630 PF03969 AFG1-like ATPase RG48_RS03635 PF00572 Ribosomal protein L13 RG48_RS03640 PF00380 Ribosomal protein S9/S16 RG48_RS03645 PF00043 Glutathione S-transferase, C-terminal domain RG48_RS03645 PF02798 Glutathione S-transferase, N-terminal domain RG48_RS03650 PF04386 Stringent starvation protein B RG48_RS03655 PF03606 C4-dicarboxylate anaerobic carrier RG48_RS03660 PF00392 Bacterial regulatory proteins, gntR family RG48_RS03660 PF07729 FCD domain RG48_RS03665 PF00701 Dihydrodipicolinate synthetase family RG48_RS03670 PF07690 Major Facilitator Superfamily RG48_RS03675 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RG48_RS03680 PF00480 ROK family RG48_RS03685 PF04074 YhcH/YjgK/YiaL RG48_RS03695 PF17761 DUF1016 N-terminal domain RG48_RS03695 PF06250 YhcG PDDEXK nuclease domain RG48_RS03700 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS03700 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RG48_RS03705 PF01493 GXGXG motif RG48_RS03705 PF01645 Conserved region in glutamate synthase RG48_RS03705 PF04898 Glutamate synthase central domain RG48_RS03705 PF00310 Glutamine amidotransferases class-II RG48_RS03720 PF04055 Radical SAM superfamily RG48_RS03720 PF16199 Radical_SAM C-terminal domain RG48_RS03725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS03725 PF18415 Histidine kinase receptor ArcB trans-membrane domain RG48_RS03725 PF01627 Hpt domain RG48_RS03725 PF00989 PAS fold RG48_RS03725 PF00072 Response regulator receiver domain RG48_RS03725 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS03735 PF00912 Transglycosylase RG48_RS03740 PF10707 PhoP regulatory network protein YrbL RG48_RS03745 PF00381 PTS HPr component phosphorylation site RG48_RS03750 PF03668 P-loop ATPase protein family RG48_RS03755 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS03760 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RG48_RS03765 PF00309 Sigma-54 factor, Activator interacting domain (AID) RG48_RS03765 PF04963 Sigma-54 factor, core binding domain RG48_RS03765 PF04552 Sigma-54, DNA binding domain RG48_RS03770 PF00005 ABC transporter RG48_RS03770 PF12399 Branched-chain amino acid ATP-binding cassette transporter RG48_RS03775 PF03968 OstA-like protein RG48_RS03780 PF06835 Lipopolysaccharide-assembly, LptC-related RG48_RS03790 PF01380 SIS domain RG48_RS03790 PF00571 CBS domain RG48_RS03795 PF01699 Sodium/calcium exchanger protein RG48_RS03800 PF00005 ABC transporter RG48_RS03805 PF02405 Permease MlaE RG48_RS03810 PF02470 MlaD protein RG48_RS03815 PF05494 MlaC protein RG48_RS03820 PF13466 STAS domain RG48_RS03825 PF01722 BolA-like protein RG48_RS03830 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RG48_RS03835 PF13693 Winged helix-turn-helix DNA-binding RG48_RS03840 PF00348 Polyprenyl synthetase RG48_RS03845 PF00829 Ribosomal prokaryotic L21 protein RG48_RS03850 PF01016 Ribosomal L27 protein RG48_RS03855 PF00892 EamA-like transporter family RG48_RS03860 PF01018 GTP1/OBG RG48_RS03860 PF01926 50S ribosome-binding GTPase RG48_RS03865 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RG48_RS03870 PF01272 Transcription elongation factor, GreA/GreB, C-term RG48_RS03870 PF03449 Transcription elongation factor, N-terminal RG48_RS03875 PF01985 CRS1 / YhbY (CRM) domain RG48_RS03880 PF01728 FtsJ-like methyltransferase RG48_RS03885 PF00004 ATPase family associated with various cellular activities (AAA) RG48_RS03885 PF17862 AAA+ lid domain RG48_RS03885 PF06480 FtsH Extracellular RG48_RS03885 PF01434 Peptidase family M41 RG48_RS03890 PF00809 Pterin binding enzyme RG48_RS03895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RG48_RS03895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RG48_RS03895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RG48_RS03895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RG48_RS03900 PF03840 Preprotein translocase SecG subunit RG48_RS03920 PF00764 Arginosuccinate synthase RG48_RS03930 PF02576 RimP N-terminal domain RG48_RS03930 PF17384 RimP C-terminal SH3 domain RG48_RS03935 PF00575 S1 RNA binding domain RG48_RS03935 PF08529 NusA N-terminal domain RG48_RS03935 PF13184 NusA-like KH domain RG48_RS03940 PF00009 Elongation factor Tu GTP binding domain RG48_RS03940 PF11987 Translation-initiation factor 2 RG48_RS03940 PF08364 Bacterial translation initiation factor IF-2 associated region RG48_RS03940 PF04760 Translation initiation factor IF-2, N-terminal region RG48_RS03945 PF02033 Ribosome-binding factor A RG48_RS03950 PF16198 tRNA pseudouridylate synthase B C-terminal domain RG48_RS03950 PF01509 TruB family pseudouridylate synthase (N terminal domain) RG48_RS03950 PF09157 Pseudouridine synthase II TruB, C-terminal RG48_RS03955 PF00312 Ribosomal protein S15 RG48_RS03960 PF00575 S1 RNA binding domain RG48_RS03960 PF03725 3' exoribonuclease family, domain 2 RG48_RS03960 PF00013 KH domain RG48_RS03960 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RG48_RS03960 PF01138 3' exoribonuclease family, domain 1 RG48_RS03965 PF13181 Tetratricopeptide repeat RG48_RS03965 PF07719 Tetratricopeptide repeat RG48_RS03975 PF03880 DbpA RNA binding domain RG48_RS03975 PF00270 DEAD/DEAH box helicase RG48_RS03975 PF12343 Cold shock protein DEAD box A RG48_RS03975 PF00271 Helicase conserved C-terminal domain RG48_RS03985 PF03222 Tryptophan/tyrosine permease family RG48_RS03990 PF00296 Luciferase-like monooxygenase RG48_RS03995 PF01136 Peptidase family U32 RG48_RS04000 PF01136 Peptidase family U32 RG48_RS04005 PF02036 SCP-2 sterol transfer family RG48_RS04010 PF13508 Acetyltransferase (GNAT) domain RG48_RS04015 PF01541 GIY-YIG catalytic domain RG48_RS04025 PF01965 DJ-1/PfpI family RG48_RS04030 PF13460 NAD(P)H-binding RG48_RS04035 PF03773 Predicted permease RG48_RS04040 PF04972 BON domain RG48_RS04045 PF13580 SIS domain RG48_RS04050 PF02021 Uncharacterised protein family UPF0102 RG48_RS04055 PF04348 LppC putative lipoprotein RG48_RS04060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RG48_RS04065 PF00419 Fimbrial protein RG48_RS04070 PF00577 Outer membrane usher protein RG48_RS04070 PF13953 PapC C-terminal domain RG48_RS04070 PF13954 PapC N-terminal domain RG48_RS04075 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS04075 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS04080 PF00419 Fimbrial protein RG48_RS04085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RG48_RS04090 PF03613 PTS system mannose/fructose/sorbose family IID component RG48_RS04095 PF03609 PTS system sorbose-specific iic component RG48_RS04100 PF03830 PTS system sorbose subfamily IIB component RG48_RS04105 PF01116 Fructose-bisphosphate aldolase class-II RG48_RS04110 PF01380 SIS domain RG48_RS04115 PF01979 Amidohydrolase family RG48_RS04120 PF03610 PTS system fructose IIA component RG48_RS04125 PF03613 PTS system mannose/fructose/sorbose family IID component RG48_RS04130 PF03609 PTS system sorbose-specific iic component RG48_RS04135 PF03830 PTS system sorbose subfamily IIB component RG48_RS04140 PF08013 Tagatose 6 phosphate kinase RG48_RS04150 PF08220 DeoR-like helix-turn-helix domain RG48_RS04150 PF00455 DeoR C terminal sensor domain RG48_RS04155 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system RG48_RS04160 PF15937 prlF antitoxin for toxin YhaV_toxin RG48_RS04165 PF08666 SAF domain RG48_RS04165 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RG48_RS04170 PF07690 Major Facilitator Superfamily RG48_RS04175 PF03328 HpcH/HpaI aldolase/citrate lyase family RG48_RS04180 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RG48_RS04180 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RG48_RS04185 PF02595 Glycerate kinase family RG48_RS04215 PF03466 LysR substrate binding domain RG48_RS04215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS04220 PF00291 Pyridoxal-phosphate dependent enzyme RG48_RS04225 PF03222 Tryptophan/tyrosine permease family RG48_RS04230 PF00871 Acetokinase family RG48_RS04235 PF02901 Pyruvate formate lyase-like RG48_RS04235 PF01228 Glycine radical RG48_RS04240 PF01042 Endoribonuclease L-PSP RG48_RS04245 PF03315 Serine dehydratase beta chain RG48_RS04245 PF03313 Serine dehydratase alpha chain RG48_RS04255 PF03313 Serine dehydratase alpha chain RG48_RS04265 PF17954 Quercetinase C-terminal cupin domain RG48_RS04265 PF02678 Pirin RG48_RS04270 PF03466 LysR substrate binding domain RG48_RS04270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS04280 PF05656 Protein of unknown function (DUF805) RG48_RS04285 PF05656 Protein of unknown function (DUF805) RG48_RS04290 PF13409 Glutathione S-transferase, N-terminal domain RG48_RS04295 PF07681 DoxX RG48_RS04300 PF13997 YqjK-like protein RG48_RS04305 PF07332 Putative Actinobacterial Holin-X, holin superfamily III RG48_RS04310 PF05957 Bacterial protein of unknown function (DUF883) RG48_RS04315 PF06476 Protein of unknown function (DUF1090) RG48_RS04320 PF13721 SecD export protein N-terminal TM region RG48_RS04325 PF09335 SNARE associated Golgi protein RG48_RS04330 PF00392 Bacterial regulatory proteins, gntR family RG48_RS04330 PF07729 FCD domain RG48_RS04340 PF04449 CS1 type fimbrial major subunit RG48_RS04345 PF15976 CS1-pili formation C-terminal RG48_RS04345 PF17271 TcfC Usher-like barrel domain RG48_RS04345 PF16967 E-set like domain RG48_RS04355 PF07690 Major Facilitator Superfamily RG48_RS04360 PF02614 Glucuronate isomerase RG48_RS04365 PF08666 SAF domain RG48_RS04365 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RG48_RS04370 PF10688 Bacterial inner membrane protein RG48_RS04375 PF00375 Sodium:dicarboxylate symporter family RG48_RS04380 PF03741 Integral membrane protein TerC family RG48_RS04385 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RG48_RS04390 PF02698 DUF218 domain RG48_RS04395 PF01863 Protein of unknown function DUF45 RG48_RS04400 PF05175 Methyltransferase small domain RG48_RS04410 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system RG48_RS04415 PF01381 Helix-turn-helix RG48_RS04420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RG48_RS04420 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS04425 PF01204 Trehalase RG48_RS04435 PF13520 Amino acid permease RG48_RS04440 PF04074 YhcH/YjgK/YiaL RG48_RS04445 PF02837 Glycosyl hydrolases family 2, sugar binding domain RG48_RS04445 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RG48_RS04445 PF00703 Glycosyl hydrolases family 2 RG48_RS04445 PF16353 Domain of unknown function(DUF4981) RG48_RS04445 PF02929 Beta galactosidase small chain RG48_RS04450 PF00356 Bacterial regulatory proteins, lacI family RG48_RS04460 PF01588 Putative tRNA binding domain RG48_RS04465 PF00202 Aminotransferase class-III RG48_RS04475 PF08447 PAS fold RG48_RS04475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RG48_RS04480 PF03551 Transcriptional regulator PadR-like family RG48_RS04490 PF04954 Siderophore-interacting protein RG48_RS04490 PF08021 Siderophore-interacting FAD-binding domain RG48_RS04500 PF03167 Uracil DNA glycosylase superfamily RG48_RS04505 PF04545 Sigma-70, region 4 RG48_RS04505 PF04539 Sigma-70 region 3 RG48_RS04505 PF00140 Sigma-70 factor, region 1.2 RG48_RS04505 PF03979 Sigma-70 factor, region 1.1 RG48_RS04505 PF04546 Sigma-70, non-essential region RG48_RS04505 PF04542 Sigma-70 region 2 RG48_RS04515 PF08278 DNA primase DnaG DnaB-binding RG48_RS04515 PF08275 DNA primase catalytic core, N-terminal domain RG48_RS04515 PF01807 CHC2 zinc finger RG48_RS04515 PF10410 DnaB-helicase binding domain of primase RG48_RS04520 PF01165 Ribosomal protein S21 RG48_RS04530 PF00814 Glycoprotease family RG48_RS04535 PF00939 Sodium:sulfate symporter transmembrane region RG48_RS04540 PF05683 Fumarase C-terminus RG48_RS04545 PF05681 Fumarate hydratase (Fumerase) RG48_RS04555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS04555 PF03466 LysR substrate binding domain RG48_RS04560 PF02660 Glycerol-3-phosphate acyltransferase RG48_RS04565 PF02152 Dihydroneopterin aldolase RG48_RS04570 PF02673 Bacitracin resistance protein BacA RG48_RS04575 PF01743 Poly A polymerase head domain RG48_RS04575 PF12627 Probable RNA and SrmB- binding site of polymerase A RG48_RS04575 PF01966 HD domain RG48_RS04580 PF08239 Bacterial SH3 domain RG48_RS04590 PF01928 CYTH domain RG48_RS04595 PF03710 Glutamate-ammonia ligase adenylyltransferase RG48_RS04595 PF08335 GlnD PII-uridylyltransferase RG48_RS04600 PF01467 Cytidylyltransferase-like RG48_RS04600 PF00294 pfkB family carbohydrate kinase RG48_RS04615 PF01145 SPFH domain / Band 7 family RG48_RS04615 PF15975 Flotillin RG48_RS04620 PF07290 Protein of unknown function (DUF1449) RG48_RS04625 PF08971 Glycogen synthesis protein RG48_RS04635 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS04635 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS04640 PF13954 PapC N-terminal domain RG48_RS04640 PF00577 Outer membrane usher protein RG48_RS04640 PF13953 PapC C-terminal domain RG48_RS04645 PF00419 Fimbrial protein RG48_RS04650 PF04380 Membrane fusogenic activity RG48_RS04655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RG48_RS04665 PF02535 ZIP Zinc transporter RG48_RS04670 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RG48_RS04675 PF03738 Glutathionylspermidine synthase preATP-grasp RG48_RS04680 PF06693 Protein of unknown function (DUF1190) RG48_RS04690 PF02321 Outer membrane efflux protein RG48_RS04695 PF00293 NUDIX domain RG48_RS04700 PF06853 Protein of unknown function (DUF1249) RG48_RS04705 PF00149 Calcineurin-like phosphoesterase RG48_RS04710 PF05728 Uncharacterised protein family (UPF0227) RG48_RS04715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS04715 PF00986 DNA gyrase B subunit, carboxyl terminus RG48_RS04715 PF00204 DNA gyrase B RG48_RS04715 PF01751 Toprim domain RG48_RS04720 PF03992 Antibiotic biosynthesis monooxygenase RG48_RS04725 PF02525 Flavodoxin-like fold RG48_RS04730 PF10840 Protein of unknown function (DUF2645) RG48_RS04735 PF08521 Two-component sensor kinase N-terminal RG48_RS04735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS04735 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS04740 PF00072 Response regulator receiver domain RG48_RS04740 PF00486 Transcriptional regulatory protein, C terminal RG48_RS04745 PF04076 Bacterial OB fold (BOF) protein RG48_RS04750 PF06445 GyrI-like small molecule binding domain RG48_RS04755 PF15723 Motility quorum-sensing regulator, toxin of MqsA RG48_RS04760 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA RG48_RS04765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS04770 PF03989 DNA gyrase C-terminal domain, beta-propeller RG48_RS04770 PF00521 DNA gyrase/topoisomerase IV, subunit A RG48_RS04780 PF01553 Acyltransferase RG48_RS04785 PF07731 Multicopper oxidase RG48_RS04785 PF07732 Multicopper oxidase RG48_RS04785 PF00394 Multicopper oxidase RG48_RS04790 PF08497 Radical SAM N-terminal RG48_RS04790 PF04055 Radical SAM superfamily RG48_RS04790 PF11842 Domain of unknown function (DUF3362) RG48_RS04795 PF04728 Lipoprotein leucine-zipper RG48_RS04800 PF12883 Protein of unknown function (DUF3828) RG48_RS04805 PF00248 Aldo/keto reductase family RG48_RS04810 PF00465 Iron-containing alcohol dehydrogenase RG48_RS04820 PF12833 Helix-turn-helix domain RG48_RS04820 PF06719 AraC-type transcriptional regulator N-terminus RG48_RS04825 PF09335 SNARE associated Golgi protein RG48_RS04830 PF01053 Cys/Met metabolism PLP-dependent enzyme RG48_RS04840 PF01618 MotA/TolQ/ExbB proton channel family RG48_RS04845 PF02472 Biopolymer transport protein ExbD/TolR RG48_RS04860 PF03350 Uncharacterized protein family, UPF0114 RG48_RS04865 PF00248 Aldo/keto reductase family RG48_RS04875 PF11115 Protein of unknown function (DUF2623) RG48_RS04885 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RG48_RS04885 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RG48_RS04890 PF13247 4Fe-4S dicluster domain RG48_RS04895 PF03916 Polysulphide reductase, NrfD RG48_RS04900 PF00374 Nickel-dependent hydrogenase RG48_RS04905 PF01750 Hydrogenase maturation protease RG48_RS04910 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE RG48_RS04915 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RG48_RS04920 PF01455 HupF/HypC family RG48_RS04925 PF01548 Transposase RG48_RS04925 PF02371 Transposase IS116/IS110/IS902 family RG48_RS04935 PF02798 Glutathione S-transferase, N-terminal domain RG48_RS04940 PF03738 Glutathionylspermidine synthase preATP-grasp RG48_RS04940 PF05257 CHAP domain RG48_RS04945 PF01384 Phosphate transporter family RG48_RS04965 PF01943 Polysaccharide biosynthesis protein RG48_RS04975 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) RG48_RS04980 PF03739 Lipopolysaccharide export system permease LptF/LptG RG48_RS04990 PF00155 Aminotransferase class I and II RG48_RS04995 PF00550 Phosphopantetheine attachment site RG48_RS05005 PF00501 AMP-binding enzyme RG48_RS05005 PF14535 AMP-binding enzyme C-terminal domain RG48_RS05020 PF07729 FCD domain RG48_RS05020 PF00392 Bacterial regulatory proteins, gntR family RG48_RS05025 PF02913 FAD linked oxidases, C-terminal domain RG48_RS05025 PF01565 FAD binding domain RG48_RS05030 PF01565 FAD binding domain RG48_RS05035 PF02754 Cysteine-rich domain RG48_RS05035 PF13183 4Fe-4S dicluster domain RG48_RS05040 PF03928 Haem-degrading RG48_RS05045 PF01274 Malate synthase RG48_RS05050 PF02652 L-lactate permease RG48_RS05065 PF13322 Domain of unknown function (DUF4092) RG48_RS05065 PF17291 N-terminal domain of M60-like peptidases RG48_RS05065 PF13402 Peptidase M60, enhancin and enhancin-like RG48_RS05070 PF07963 Prokaryotic N-terminal methylation motif RG48_RS05070 PF08334 Type II secretion system (T2SS), protein G RG48_RS05075 PF12019 Type II transport protein GspH RG48_RS05080 PF07963 Prokaryotic N-terminal methylation motif RG48_RS05080 PF02501 Type II secretion system (T2SS), protein I RG48_RS05085 PF11612 Type II secretion system (T2SS), protein J RG48_RS05085 PF07963 Prokaryotic N-terminal methylation motif RG48_RS05090 PF04612 Type II secretion system (T2SS), protein M RG48_RS05100 PF04474 Protein of unknown function (DUF554) RG48_RS05110 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RG48_RS05110 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RG48_RS05110 PF01276 Orn/Lys/Arg decarboxylase, major domain RG48_RS05115 PF03825 Nucleoside H+ symporter RG48_RS05120 PF01464 Transglycosylase SLT domain RG48_RS05120 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RG48_RS05125 PF04362 Bacterial Fe(2+) trafficking RG48_RS05130 PF10576 Iron-sulfur binding domain of endonuclease III RG48_RS05130 PF14815 NUDIX domain RG48_RS05130 PF00730 HhH-GPD superfamily base excision DNA repair protein RG48_RS05130 PF00633 Helix-hairpin-helix motif RG48_RS05140 PF02390 Putative methyltransferase RG48_RS05145 PF04320 Protein with unknown function (DUF469) RG48_RS05150 PF11101 Protein of unknown function (DUF2884) RG48_RS05155 PF17763 Glutaminase/Asparaginase C-terminal domain RG48_RS05155 PF00710 Asparaginase, N-terminal RG48_RS05160 PF06717 Protein of unknown function (DUF1202) RG48_RS05165 PF06969 HemN C-terminal domain RG48_RS05165 PF04055 Radical SAM superfamily RG48_RS05170 PF01725 Ham1 family RG48_RS05175 PF02594 Uncharacterised ACR, YggU family COG1872 RG48_RS05180 PF02325 YGGT family RG48_RS05185 PF01168 Alanine racemase, N-terminal domain RG48_RS05190 PF00437 Type II/IV secretion system protein RG48_RS05195 PF03652 Holliday junction resolvase RG48_RS05200 PF02622 Uncharacterized ACR, COG1678 RG48_RS05205 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RG48_RS05205 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RG48_RS05210 PF04452 RNA methyltransferase RG48_RS05215 PF04231 Endonuclease I RG48_RS05220 PF17283 SprT-like zinc ribbon domain RG48_RS05220 PF10263 SprT-like family RG48_RS05225 PF00083 Sugar (and other) transporter RG48_RS05235 PF02773 S-adenosylmethionine synthetase, C-terminal domain RG48_RS05235 PF02772 S-adenosylmethionine synthetase, central domain RG48_RS05235 PF00438 S-adenosylmethionine synthetase, N-terminal domain RG48_RS05245 PF17430 Uncharacterized YqgC-like RG48_RS05250 PF11036 Virulence promoting factor RG48_RS05255 PF17810 Arginine decarboxylase helical bundle domain RG48_RS05255 PF17944 Arginine decarboxylase C-terminal helical extension RG48_RS05255 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RG48_RS05260 PF00491 Arginase family RG48_RS05265 PF01435 Peptidase family M48 RG48_RS05270 PF02779 Transketolase, pyrimidine binding domain RG48_RS05270 PF02780 Transketolase, C-terminal domain RG48_RS05270 PF00456 Transketolase, thiamine diphosphate binding domain RG48_RS05275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS05280 PF02378 Phosphotransferase system, EIIC RG48_RS05280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS05285 PF00107 Zinc-binding dehydrogenase RG48_RS05285 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS05290 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RG48_RS05295 PF05068 Mannitol repressor RG48_RS05310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RG48_RS05310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RG48_RS05315 PF00162 Phosphoglycerate kinase RG48_RS05320 PF01116 Fructose-bisphosphate aldolase class-II RG48_RS05325 PF00924 Mechanosensitive ion channel RG48_RS05325 PF05552 Conserved TM helix RG48_RS05330 PF01810 LysE type translocator RG48_RS05335 PF04402 Protein of unknown function (DUF541) RG48_RS05340 PF03466 LysR substrate binding domain RG48_RS05340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS05345 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain RG48_RS05345 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain RG48_RS05350 PF00378 Enoyl-CoA hydratase/isomerase RG48_RS05360 PF02310 B12 binding domain RG48_RS05360 PF01642 Methylmalonyl-CoA mutase RG48_RS05370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS05370 PF03466 LysR substrate binding domain RG48_RS05375 PF03466 LysR substrate binding domain RG48_RS05380 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RG48_RS05385 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RG48_RS05385 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RG48_RS05385 PF01842 ACT domain RG48_RS05395 PF01812 5-formyltetrahydrofolate cyclo-ligase family RG48_RS05405 PF05164 Cell division protein ZapA RG48_RS05415 PF03695 Uncharacterised protein family (UPF0149) RG48_RS05420 PF05195 Aminopeptidase P, N-terminal domain RG48_RS05420 PF00557 Metallopeptidase family M24 RG48_RS05425 PF01494 FAD binding domain RG48_RS05430 PF01494 FAD binding domain RG48_RS05435 PF08669 Glycine cleavage T-protein C-terminal barrel domain RG48_RS05435 PF01571 Aminomethyltransferase folate-binding domain RG48_RS05440 PF01597 Glycine cleavage H-protein RG48_RS05445 PF02347 Glycine cleavage system P-protein RG48_RS05450 PF00232 Glycosyl hydrolase family 1 RG48_RS05455 PF04266 ASCH domain RG48_RS05460 PF03006 Haemolysin-III related RG48_RS05465 PF01571 Aminomethyltransferase folate-binding domain RG48_RS05470 PF03937 Flavinator of succinate dehydrogenase RG48_RS05475 PF07254 Membrane-bound toxin component of toxin-antitoxin system RG48_RS05480 PF00258 Flavodoxin RG48_RS05485 PF00589 Phage integrase family RG48_RS05485 PF02899 Phage integrase, N-terminal SAM-like domain RG48_RS05490 PF10411 Disulfide bond isomerase protein N-terminus RG48_RS05490 PF13098 Thioredoxin-like domain RG48_RS05495 PF01368 DHH family RG48_RS05495 PF02272 DHHA1 domain RG48_RS05495 PF17768 RecJ OB domain RG48_RS05505 PF00152 tRNA synthetases class II (D, K and N) RG48_RS05505 PF01336 OB-fold nucleic acid binding domain RG48_RS05510 PF00293 NUDIX domain RG48_RS05520 PF00860 Permease family RG48_RS05530 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS05530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RG48_RS05530 PF13247 4Fe-4S dicluster domain RG48_RS05535 PF13247 4Fe-4S dicluster domain RG48_RS05540 PF00860 Permease family RG48_RS05545 PF01979 Amidohydrolase family RG48_RS05550 PF00860 Permease family RG48_RS05555 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RG48_RS05555 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RG48_RS05555 PF01799 [2Fe-2S] binding domain RG48_RS05560 PF00941 FAD binding domain in molybdopterin dehydrogenase RG48_RS05565 PF01979 Amidohydrolase family RG48_RS05570 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RG48_RS05570 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS05575 PF12804 MobA-like NTP transferase domain RG48_RS05585 PF02625 XdhC and CoxI family RG48_RS05585 PF13478 XdhC Rossmann domain RG48_RS05595 PF00696 Amino acid kinase family RG48_RS05600 PF01979 Amidohydrolase family RG48_RS05605 PF01546 Peptidase family M20/M25/M40 RG48_RS05605 PF07687 Peptidase dimerisation domain RG48_RS05610 PF00291 Pyridoxal-phosphate dependent enzyme RG48_RS05615 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RG48_RS05615 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RG48_RS05620 PF13188 PAS domain RG48_RS05620 PF00158 Sigma-54 interaction domain RG48_RS05620 PF02954 Bacterial regulatory protein, Fis family RG48_RS05625 PF01799 [2Fe-2S] binding domain RG48_RS05625 PF00111 2Fe-2S iron-sulfur cluster binding domain RG48_RS05630 PF03450 CO dehydrogenase flavoprotein C-terminal domain RG48_RS05630 PF00941 FAD binding domain in molybdopterin dehydrogenase RG48_RS05635 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RG48_RS05635 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RG48_RS05645 PF01476 LysM domain RG48_RS05645 PF01551 Peptidase family M23 RG48_RS05660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RG48_RS05665 PF00813 FliP family RG48_RS05670 PF01313 Bacterial export proteins, family 3 RG48_RS05675 PF01311 Bacterial export proteins, family 1 RG48_RS05680 PF01312 FlhB HrpN YscU SpaS Family RG48_RS05685 PF01312 FlhB HrpN YscU SpaS Family RG48_RS05700 PF09480 Type III secretion system protein PrgH-EprH (PrgH) RG48_RS05705 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF RG48_RS05715 PF01514 Secretory protein of YscJ/FliF family RG48_RS05730 PF00072 Response regulator receiver domain RG48_RS05730 PF00196 Bacterial regulatory proteins, luxR family RG48_RS05735 PF00072 Response regulator receiver domain RG48_RS05735 PF00196 Bacterial regulatory proteins, luxR family RG48_RS05750 PF00486 Transcriptional regulatory protein, C terminal RG48_RS05760 PF07720 Tetratricopeptide repeat RG48_RS05785 PF00486 Transcriptional regulatory protein, C terminal RG48_RS05790 PF00196 Bacterial regulatory proteins, luxR family RG48_RS05795 PF03222 Tryptophan/tyrosine permease family RG48_RS05800 PF02803 Thiolase, C-terminal domain RG48_RS05800 PF00108 Thiolase, N-terminal domain RG48_RS05805 PF04962 KduI/IolB family RG48_RS05815 PF00083 Sugar (and other) transporter RG48_RS05820 PF01177 Asp/Glu/Hydantoin racemase RG48_RS05825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS05825 PF03466 LysR substrate binding domain RG48_RS05830 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RG48_RS05830 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RG48_RS05835 PF00356 Bacterial regulatory proteins, lacI family RG48_RS05845 PF00501 AMP-binding enzyme RG48_RS05845 PF01553 Acyltransferase RG48_RS05850 PF07690 Major Facilitator Superfamily RG48_RS05855 PF00248 Aldo/keto reductase family RG48_RS05860 PF06004 Bacterial protein of unknown function (DUF903) RG48_RS05865 PF03741 Integral membrane protein TerC family RG48_RS05870 PF02976 DNA mismatch repair enzyme MutH RG48_RS05885 PF00293 NUDIX domain RG48_RS05890 PF05524 PEP-utilising enzyme, N-terminal RG48_RS05890 PF00391 PEP-utilising enzyme, mobile domain RG48_RS05890 PF01590 GAF domain RG48_RS05890 PF02896 PEP-utilising enzyme, TIM barrel domain RG48_RS05895 PF01790 Prolipoprotein diacylglyceryl transferase RG48_RS05900 PF00303 Thymidylate synthase RG48_RS05905 PF07963 Prokaryotic N-terminal methylation motif RG48_RS05910 PF07963 Prokaryotic N-terminal methylation motif RG48_RS05915 PF10713 Protein of unknown function (DUF2509) RG48_RS05920 PF07963 Prokaryotic N-terminal methylation motif RG48_RS05920 PF12528 Type II secretion prepilin peptidase dependent protein C RG48_RS05925 PF17946 RecC C-terminal domain RG48_RS05930 PF00675 Insulinase (Peptidase family M16) RG48_RS05930 PF05193 Peptidase M16 inactive domain RG48_RS05930 PF16187 Middle or third domain of peptidase_M16 RG48_RS05935 PF13361 UvrD-like helicase C-terminal domain RG48_RS05935 PF00580 UvrD/REP helicase N-terminal domain RG48_RS05935 PF12705 PD-(D/E)XK nuclease superfamily RG48_RS05940 PF13538 UvrD-like helicase C-terminal domain RG48_RS05945 PF00583 Acetyltransferase (GNAT) family RG48_RS05945 PF00696 Amino acid kinase family RG48_RS05950 PF01520 N-acetylmuramoyl-L-alanine amidase RG48_RS05950 PF11741 AMIN domain RG48_RS05975 PF03562 MltA specific insert domain RG48_RS05975 PF06725 3D domain RG48_RS05980 PF00899 ThiF family RG48_RS05985 PF02657 Fe-S metabolism associated domain RG48_RS05990 PF00266 Aminotransferase class-V RG48_RS05995 PF06004 Bacterial protein of unknown function (DUF903) RG48_RS06000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS06000 PF03466 LysR substrate binding domain RG48_RS06005 PF04241 Protein of unknown function (DUF423) RG48_RS06010 PF01728 FtsJ-like methyltransferase RG48_RS06010 PF18125 RlmM ferredoxin-like domain RG48_RS06015 PF08220 DeoR-like helix-turn-helix domain RG48_RS06015 PF00455 DeoR C terminal sensor domain RG48_RS06020 PF05025 RbsD / FucU transport protein family RG48_RS06025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RG48_RS06025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RG48_RS06030 PF07882 L-fucose isomerase, second N-terminal domain RG48_RS06030 PF07881 L-fucose isomerase, first N-terminal domain RG48_RS06030 PF02952 L-fucose isomerase, C-terminal domain RG48_RS06035 PF07690 Major Facilitator Superfamily RG48_RS06040 PF00596 Class II Aldolase and Adducin N-terminal domain RG48_RS06045 PF00465 Iron-containing alcohol dehydrogenase RG48_RS06050 PF01367 5'-3' exonuclease, C-terminal SAM fold RG48_RS06050 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RG48_RS06055 PF03315 Serine dehydratase beta chain RG48_RS06055 PF03313 Serine dehydratase alpha chain RG48_RS06065 PF03641 Possible lysine decarboxylase RG48_RS06065 PF11892 Domain of unknown function (DUF3412) RG48_RS06065 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases RG48_RS06070 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RG48_RS06070 PF14489 QueF-like protein RG48_RS06075 PF07348 Syd protein (SUKH-2) RG48_RS06085 PF04287 tRNA pseudouridine synthase C RG48_RS06090 PF00849 RNA pseudouridylate synthase RG48_RS06095 PF00258 Flavodoxin RG48_RS06100 PF07690 Major Facilitator Superfamily RG48_RS06105 PF13378 Enolase C-terminal domain-like RG48_RS06105 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RG48_RS06110 PF13378 Enolase C-terminal domain-like RG48_RS06115 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RG48_RS06115 PF01627 Hpt domain RG48_RS06115 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS06115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS06115 PF00672 HAMP domain RG48_RS06115 PF00072 Response regulator receiver domain RG48_RS06120 PF05958 tRNA (Uracil-5-)-methyltransferase RG48_RS06120 PF01938 TRAM domain RG48_RS06125 PF04607 Region found in RelA / SpoT proteins RG48_RS06125 PF13291 ACT domain RG48_RS06125 PF02824 TGS domain RG48_RS06130 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin RG48_RS06135 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system RG48_RS06140 PF03819 MazG nucleotide pyrophosphohydrolase domain RG48_RS06145 PF00117 Glutamine amidotransferase class-I RG48_RS06145 PF06418 CTP synthase N-terminus RG48_RS06150 PF00113 Enolase, C-terminal TIM barrel domain RG48_RS06150 PF03952 Enolase, N-terminal domain RG48_RS06155 PF04536 TPM domain RG48_RS06165 PF04055 Radical SAM superfamily RG48_RS06170 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RG48_RS06170 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RG48_RS06175 PF07690 Major Facilitator Superfamily RG48_RS06185 PF01565 FAD binding domain RG48_RS06185 PF02913 FAD linked oxidases, C-terminal domain RG48_RS06190 PF00083 Sugar (and other) transporter RG48_RS06195 PF01012 Electron transfer flavoprotein domain RG48_RS06200 PF00766 Electron transfer flavoprotein FAD-binding domain RG48_RS06200 PF01012 Electron transfer flavoprotein domain RG48_RS06205 PF04309 Glycerol-3-phosphate responsive antiterminator RG48_RS06215 PF01266 FAD dependent oxidoreductase RG48_RS06220 PF01242 6-pyruvoyl tetrahydropterin synthase RG48_RS06225 PF00175 Oxidoreductase NAD-binding domain RG48_RS06225 PF00667 FAD binding domain RG48_RS06225 PF00258 Flavodoxin RG48_RS06230 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RG48_RS06230 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RG48_RS06235 PF01507 Phosphoadenosine phosphosulfate reductase family RG48_RS06240 PF00271 Helicase conserved C-terminal domain RG48_RS06240 PF18019 HD domain RG48_RS06240 PF00270 DEAD/DEAH box helicase RG48_RS06245 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) RG48_RS06250 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) RG48_RS06255 PF09344 CT1975-like protein RG48_RS06260 PF09704 CRISPR-associated protein (Cas_Cas5) RG48_RS06265 PF08798 CRISPR associated protein RG48_RS06270 PF01867 CRISPR associated protein Cas1 RG48_RS06275 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) RG48_RS06280 PF04389 Peptidase family M28 RG48_RS06285 PF01507 Phosphoadenosine phosphosulfate reductase family RG48_RS06290 PF00009 Elongation factor Tu GTP binding domain RG48_RS06300 PF12084 Protein of unknown function (DUF3561) RG48_RS06305 PF04977 Septum formation initiator RG48_RS06310 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RG48_RS06315 PF02542 YgbB family RG48_RS06320 PF01142 tRNA pseudouridine synthase D (TruD) RG48_RS06325 PF01975 Survival protein SurE RG48_RS06335 PF01551 Peptidase family M23 RG48_RS06335 PF01476 LysM domain RG48_RS06340 PF04542 Sigma-70 region 2 RG48_RS06340 PF04539 Sigma-70 region 3 RG48_RS06340 PF04545 Sigma-70, region 4 RG48_RS06340 PF00140 Sigma-70 factor, region 1.2 RG48_RS06345 PF02447 GntP family permease RG48_RS06350 PF01261 Xylose isomerase-like TIM barrel RG48_RS06355 PF00596 Class II Aldolase and Adducin N-terminal domain RG48_RS06360 PF17042 Nucleotide-binding C-terminal domain RG48_RS06360 PF07005 Sugar-binding N-terminal domain RG48_RS06365 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RG48_RS06365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RG48_RS06370 PF08220 DeoR-like helix-turn-helix domain RG48_RS06370 PF00455 DeoR C terminal sensor domain RG48_RS06375 PF00149 Calcineurin-like phosphoesterase RG48_RS06380 PF05190 MutS family domain IV RG48_RS06380 PF05192 MutS domain III RG48_RS06380 PF01624 MutS domain I RG48_RS06380 PF00488 MutS domain V RG48_RS06380 PF05188 MutS domain II RG48_RS06390 PF11756 Nitrous oxide-stimulated promoter RG48_RS06395 PF01590 GAF domain RG48_RS06395 PF00158 Sigma-54 interaction domain RG48_RS06400 PF02769 AIR synthase related protein, C-terminal domain RG48_RS06400 PF00586 AIR synthase related protein, N-terminal domain RG48_RS06405 PF01924 Hydrogenase formation hypA family RG48_RS06410 PF01455 HupF/HypC family RG48_RS06415 PF02492 CobW/HypB/UreG, nucleotide-binding domain RG48_RS06420 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RG48_RS06425 PF11046 Transcriptional repressor of hyc and hyp operons RG48_RS06435 PF13247 4Fe-4S dicluster domain RG48_RS06440 PF00361 Proton-conducting membrane transporter RG48_RS06445 PF00146 NADH dehydrogenase RG48_RS06450 PF00374 Nickel-dependent hydrogenase RG48_RS06450 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RG48_RS06450 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RG48_RS06455 PF12838 4Fe-4S dicluster domain RG48_RS06460 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RG48_RS06465 PF07450 Formate hydrogenlyase maturation protein HycH RG48_RS06470 PF01750 Hydrogenase maturation protease RG48_RS06475 PF00232 Glycosyl hydrolase family 1 RG48_RS06480 PF02378 Phosphotransferase system, EIIC RG48_RS06480 PF00367 phosphotransferase system, EIIB RG48_RS06485 PF00356 Bacterial regulatory proteins, lacI family RG48_RS06490 PF13247 4Fe-4S dicluster domain RG48_RS06490 PF12800 4Fe-4S binding domain RG48_RS06495 PF00708 Acylphosphatase RG48_RS06495 PF17788 HypF Kae1-like domain RG48_RS06495 PF07503 HypF finger RG48_RS06495 PF01300 Telomere recombination RG48_RS06505 PF18113 Rubredoxin binding C-terminal domain RG48_RS06505 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS06510 PF00301 Rubredoxin RG48_RS06510 PF00753 Metallo-beta-lactamase superfamily RG48_RS06510 PF00258 Flavodoxin RG48_RS06515 PF01590 GAF domain RG48_RS06515 PF00158 Sigma-54 interaction domain RG48_RS06520 PF00571 CBS domain RG48_RS06520 PF01380 SIS domain RG48_RS06525 PF08220 DeoR-like helix-turn-helix domain RG48_RS06525 PF00455 DeoR C terminal sensor domain RG48_RS06530 PF06923 Glucitol operon activator protein (GutM) RG48_RS06535 PF00106 short chain dehydrogenase RG48_RS06540 PF03829 PTS system glucitol/sorbitol-specific IIA component RG48_RS06545 PF03612 Sorbitol phosphotransferase enzyme II N-terminus RG48_RS06545 PF07663 Sorbitol phosphotransferase enzyme II C-terminus RG48_RS06550 PF03608 PTS system enzyme II sorbitol-specific factor RG48_RS06555 PF13406 Transglycosylase SLT domain RG48_RS06560 PF02464 Competence-damaged protein RG48_RS06565 PF00154 recA bacterial DNA recombination protein RG48_RS06570 PF02631 RecX family RG48_RS06580 PF01411 tRNA synthetases class II (A) RG48_RS06580 PF02272 DHHA1 domain RG48_RS06580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RG48_RS06585 PF02599 Global regulator protein family RG48_RS06615 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS06620 PF09335 SNARE associated Golgi protein RG48_RS06625 PF04262 Glutamate-cysteine ligase RG48_RS06630 PF02664 S-Ribosylhomocysteinase (LuxS) RG48_RS06635 PF07690 Major Facilitator Superfamily RG48_RS06640 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS06640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS06645 PF01047 MarR family RG48_RS06650 PF05437 Branched-chain amino acid transport protein (AzlD) RG48_RS06655 PF03591 AzlC protein RG48_RS06660 PF07690 Major Facilitator Superfamily RG48_RS06665 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RG48_RS06670 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS06675 PF00571 CBS domain RG48_RS06675 PF00005 ABC transporter RG48_RS06680 PF00268 Ribonucleotide reductase, small chain RG48_RS06685 PF02867 Ribonucleotide reductase, barrel domain RG48_RS06685 PF08343 Ribonucleotide reductase N-terminal RG48_RS06685 PF00317 Ribonucleotide reductase, all-alpha domain RG48_RS06690 PF07972 NrdI Flavodoxin like RG48_RS06695 PF00462 Glutaredoxin RG48_RS06700 PF05957 Bacterial protein of unknown function (DUF883) RG48_RS06705 PF09400 Protein of unknown function (DUF2002) RG48_RS06710 PF06610 L-alanine exporter RG48_RS06715 PF00816 H-NS histone family RG48_RS06720 PF11127 Protein of unknown function (DUF2892) RG48_RS06720 PF00581 Rhodanese-like domain RG48_RS06725 PF01022 Bacterial regulatory protein, arsR family RG48_RS06730 PF01679 Proteolipid membrane potential modulator RG48_RS06735 PF01476 LysM domain RG48_RS06735 PF04972 BON domain RG48_RS06740 PF00392 Bacterial regulatory proteins, gntR family RG48_RS06740 PF07729 FCD domain RG48_RS06745 PF00324 Amino acid permease RG48_RS06750 PF00202 Aminotransferase class-III RG48_RS06755 PF00171 Aldehyde dehydrogenase family RG48_RS06760 PF01266 FAD dependent oxidoreductase RG48_RS06765 PF08943 CsiD RG48_RS06780 PF17612 Family of unknown function (DUF5507) RG48_RS06785 PF17621 Family of unknown function (DUF5508) RG48_RS06805 PF03212 Pertactin RG48_RS06805 PF16168 Adhesin of bacterial autotransporter system, probable stalk RG48_RS06805 PF03797 Autotransporter beta-domain RG48_RS06810 PF03797 Autotransporter beta-domain RG48_RS06810 PF16168 Adhesin of bacterial autotransporter system, probable stalk RG48_RS06810 PF03212 Pertactin RG48_RS06830 PF00589 Phage integrase family RG48_RS06900 PF01471 Putative peptidoglycan binding domain RG48_RS06900 PF10128 Glucose-6-phosphate dehydrogenase subunit RG48_RS06920 PF17762 HTH domain found in ParB protein RG48_RS06920 PF02195 ParB-like nuclease domain RG48_RS06930 PF13356 Arm DNA-binding domain RG48_RS06930 PF00589 Phage integrase family RG48_RS06940 PF01668 SmpB protein RG48_RS06945 PF03364 Polyketide cyclase / dehydrase and lipid transport RG48_RS06950 PF03658 RnfH family Ubiquitin RG48_RS06955 PF04355 SmpA / OmlA family RG48_RS06960 PF02463 RecF/RecN/SMC N terminal domain RG48_RS06965 PF01513 ATP-NAD kinase RG48_RS06975 PF01025 GrpE RG48_RS06980 PF01595 Cyclin M transmembrane N-terminal domain RG48_RS06980 PF03471 Transporter associated domain RG48_RS06980 PF00571 CBS domain RG48_RS06985 PF01578 Cytochrome C assembly protein RG48_RS06990 PF02978 Signal peptide binding domain RG48_RS06990 PF00448 SRP54-type protein, GTPase domain RG48_RS06990 PF02881 SRP54-type protein, helical bundle domain RG48_RS06995 PF00886 Ribosomal protein S16 RG48_RS07000 PF01782 RimM N-terminal domain RG48_RS07000 PF05239 PRC-barrel domain RG48_RS07005 PF01746 tRNA (Guanine-1)-methyltransferase RG48_RS07010 PF01245 Ribosomal protein L19 RG48_RS07015 PF00691 OmpA family RG48_RS07020 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS07020 PF17152 Periplasmic sensor domain RG48_RS07025 PF13689 YfiR/HmsC-like RG48_RS07030 PF10973 Protein of unknown function (DUF2799) RG48_RS07035 PF00793 DAHP synthetase I family RG48_RS07040 PF02153 Prephenate dehydrogenase RG48_RS07040 PF01817 Chorismate mutase type II RG48_RS07045 PF00800 Prephenate dehydratase RG48_RS07045 PF01817 Chorismate mutase type II RG48_RS07050 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RG48_RS07060 PF13525 Outer membrane lipoprotein RG48_RS07065 PF01479 S4 domain RG48_RS07065 PF00849 RNA pseudouridylate synthase RG48_RS07070 PF02578 Multi-copper polyphenol oxidoreductase laccase RG48_RS07075 PF00004 ATPase family associated with various cellular activities (AAA) RG48_RS07075 PF07724 AAA domain (Cdc48 subfamily) RG48_RS07075 PF17871 AAA lid domain RG48_RS07075 PF02861 Clp amino terminal domain, pathogenicity island component RG48_RS07075 PF10431 C-terminal, D2-small domain, of ClpB protein RG48_RS07105 PF00083 Sugar (and other) transporter RG48_RS07110 PF10043 Predicted periplasmic lipoprotein (DUF2279) RG48_RS07115 PF13091 PLD-like domain RG48_RS07120 PF00583 Acetyltransferase (GNAT) family RG48_RS07120 PF13607 Succinyl-CoA ligase like flavodoxin domain RG48_RS07120 PF13380 CoA binding domain RG48_RS07125 PF03942 DTW domain RG48_RS07130 PF00085 Thioredoxin RG48_RS07135 PF00588 SpoU rRNA Methylase family RG48_RS07135 PF08032 RNA 2'-O ribose methyltransferase substrate binding RG48_RS07140 PF03167 Uracil DNA glycosylase superfamily RG48_RS07145 PF01228 Glycine radical RG48_RS07150 PF01810 LysE type translocator RG48_RS07155 PF03466 LysR substrate binding domain RG48_RS07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS07160 PF00270 DEAD/DEAH box helicase RG48_RS07160 PF00271 Helicase conserved C-terminal domain RG48_RS07165 PF05175 Methyltransferase small domain RG48_RS07170 PF00890 FAD binding domain RG48_RS07170 PF02910 Fumarate reductase flavoprotein C-term RG48_RS07180 PF08281 Sigma-70, region 4 RG48_RS07180 PF04542 Sigma-70 region 2 RG48_RS07185 PF03872 Anti sigma-E protein RseA, N-terminal domain RG48_RS07185 PF03873 Anti sigma-E protein RseA, C-terminal domain RG48_RS07190 PF03888 MucB/RseB N-terminal domain RG48_RS07190 PF17188 MucB/RseB C-terminal domain RG48_RS07200 PF00679 Elongation factor G C-terminus RG48_RS07200 PF00009 Elongation factor Tu GTP binding domain RG48_RS07200 PF03144 Elongation factor Tu domain 2 RG48_RS07200 PF06421 GTP-binding protein LepA C-terminus RG48_RS07205 PF10502 Signal peptidase, peptidase S26 RG48_RS07215 PF14622 Ribonuclease-III-like RG48_RS07215 PF00035 Double-stranded RNA binding motif RG48_RS07220 PF01926 50S ribosome-binding GTPase RG48_RS07220 PF07650 KH domain RG48_RS07225 PF11967 Recombination protein O N terminal RG48_RS07225 PF02565 Recombination protein O C terminal RG48_RS07230 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RG48_RS07235 PF01648 4'-phosphopantetheinyl transferase superfamily RG48_RS07255 PF12838 4Fe-4S dicluster domain RG48_RS07260 PF01380 SIS domain RG48_RS07260 PF01418 Helix-turn-helix domain, rpiR family RG48_RS07270 PF14437 MafB19-like deaminase RG48_RS07275 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS07275 PF01464 Transglycosylase SLT domain RG48_RS07285 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RG48_RS07285 PF02769 AIR synthase related protein, C-terminal domain RG48_RS07285 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RG48_RS07290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS07290 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS07295 PF13942 YfhG lipoprotein RG48_RS07300 PF00072 Response regulator receiver domain RG48_RS07300 PF00158 Sigma-54 interaction domain RG48_RS07305 PF00543 Nitrogen regulatory protein P-II RG48_RS07310 PF00175 Oxidoreductase NAD-binding domain RG48_RS07310 PF00970 Oxidoreductase FAD-binding domain RG48_RS07310 PF00042 Globin RG48_RS07320 PF00464 Serine hydroxymethyltransferase RG48_RS07325 PF00480 ROK family RG48_RS07330 PF13181 Tetratricopeptide repeat RG48_RS07330 PF17128 Domain of unknown function (DUF5107) RG48_RS07335 PF13407 Periplasmic binding protein domain RG48_RS07340 PF00005 ABC transporter RG48_RS07345 PF02653 Branched-chain amino acid transport system / permease component RG48_RS07350 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS07350 PF00107 Zinc-binding dehydrogenase RG48_RS07355 PF01263 Aldose 1-epimerase RG48_RS07360 PF07681 DoxX RG48_RS07365 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS07365 PF14759 Reductase C-terminal RG48_RS07370 PF00106 short chain dehydrogenase RG48_RS07375 PF00355 Rieske [2Fe-2S] domain RG48_RS07380 PF00866 Ring hydroxylating beta subunit RG48_RS07385 PF00355 Rieske [2Fe-2S] domain RG48_RS07385 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RG48_RS07390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS07390 PF03466 LysR substrate binding domain RG48_RS07395 PF12832 MFS_1 like family RG48_RS07400 PF00874 PRD domain RG48_RS07405 PF12146 Serine aminopeptidase, S33 RG48_RS07410 PF00459 Inositol monophosphatase family RG48_RS07415 PF00588 SpoU rRNA Methylase family RG48_RS07420 PF02082 Transcriptional regulator RG48_RS07425 PF00266 Aminotransferase class-V RG48_RS07430 PF01592 NifU-like N terminal domain RG48_RS07435 PF01521 Iron-sulphur cluster biosynthesis RG48_RS07440 PF07743 HSCB C-terminal oligomerisation domain RG48_RS07445 PF00012 Hsp70 protein RG48_RS07450 PF00111 2Fe-2S iron-sulfur cluster binding domain RG48_RS07455 PF04384 Iron-sulphur cluster assembly RG48_RS07460 PF12404 Peptidase RG48_RS07460 PF00883 Cytosol aminopeptidase family, catalytic domain RG48_RS07465 PF07179 SseB protein N-terminal domain RG48_RS07465 PF14581 SseB protein C-terminal domain RG48_RS07470 PF00581 Rhodanese-like domain RG48_RS07475 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RG48_RS07475 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RG48_RS07475 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RG48_RS07475 PF01835 MG2 domain RG48_RS07475 PF17962 Bacterial macroglobulin domain 6 RG48_RS07475 PF07678 A-macroglobulin TED domain RG48_RS07475 PF00207 Alpha-2-macroglobulin family RG48_RS07475 PF07703 Alpha-2-macroglobulin bait region domain RG48_RS07475 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RG48_RS07480 PF06832 Penicillin-Binding Protein C-terminus Family RG48_RS07480 PF00912 Transglycosylase RG48_RS07480 PF00905 Penicillin binding protein transpeptidase domain RG48_RS07485 PF00334 Nucleoside diphosphate kinase RG48_RS07490 PF04055 Radical SAM superfamily RG48_RS07495 PF13464 Domain of unknown function (DUF4115) RG48_RS07500 PF04551 GcpE protein RG48_RS07505 PF03129 Anticodon binding domain RG48_RS07505 PF13393 Histidyl-tRNA synthetase RG48_RS07510 PF09976 Tetratricopeptide repeat-like domain RG48_RS07515 PF13360 PQQ-like domain RG48_RS07520 PF01926 50S ribosome-binding GTPase RG48_RS07520 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RG48_RS07525 PF07191 zinc-ribbons RG48_RS07530 PF02601 Exonuclease VII, large subunit RG48_RS07530 PF13742 OB-fold nucleic acid binding domain RG48_RS07535 PF00478 IMP dehydrogenase / GMP reductase domain RG48_RS07535 PF00571 CBS domain RG48_RS07540 PF00117 Glutamine amidotransferase class-I RG48_RS07540 PF00958 GMP synthase C terminal domain RG48_RS07540 PF02540 NAD synthase RG48_RS07545 PF17358 Family of unknown function (DUF5384) RG48_RS07550 PF05433 Glycine zipper 2TM domain RG48_RS07560 PF11119 Protein of unknown function (DUF2633) RG48_RS07570 PF05231 MASE1 RG48_RS07570 PF00563 EAL domain RG48_RS07575 PF02541 Ppx/GppA phosphatase family RG48_RS07580 PF13090 Polyphosphate kinase C-terminal domain 2 RG48_RS07580 PF17941 Polyphosphate kinase C-terminal domain 1 RG48_RS07580 PF02503 Polyphosphate kinase middle domain RG48_RS07580 PF13089 Polyphosphate kinase N-terminal domain RG48_RS07585 PF00551 Formyl transferase RG48_RS07590 PF02769 AIR synthase related protein, C-terminal domain RG48_RS07590 PF00586 AIR synthase related protein, N-terminal domain RG48_RS07605 PF00860 Permease family RG48_RS07610 PF00308 Bacterial dnaA protein RG48_RS07615 PF03960 ArsC family RG48_RS07620 PF01435 Peptidase family M48 RG48_RS07625 PF01594 AI-2E family transporter RG48_RS07630 PF01226 Formate/nitrite transporter RG48_RS07635 PF00158 Sigma-54 interaction domain RG48_RS07635 PF01590 GAF domain RG48_RS07640 PF07450 Formate hydrogenlyase maturation protein HycH RG48_RS07645 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RG48_RS07650 PF12838 4Fe-4S dicluster domain RG48_RS07655 PF00374 Nickel-dependent hydrogenase RG48_RS07655 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RG48_RS07655 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RG48_RS07660 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RG48_RS07660 PF00361 Proton-conducting membrane transporter RG48_RS07665 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RG48_RS07670 PF00361 Proton-conducting membrane transporter RG48_RS07670 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RG48_RS07675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RG48_RS07675 PF00361 Proton-conducting membrane transporter RG48_RS07680 PF00146 NADH dehydrogenase RG48_RS07685 PF00146 NADH dehydrogenase RG48_RS07690 PF00361 Proton-conducting membrane transporter RG48_RS07695 PF12798 4Fe-4S binding domain RG48_RS07695 PF00037 4Fe-4S binding domain RG48_RS07700 PF00578 AhpC/TSA family RG48_RS07705 PF01842 ACT domain RG48_RS07710 PF00701 Dihydrodipicolinate synthetase family RG48_RS07715 PF06804 NlpB/DapX lipoprotein RG48_RS07725 PF01259 SAICAR synthetase RG48_RS07730 PF04228 Putative neutral zinc metallopeptidase RG48_RS07735 PF08351 Domain of unknown function (DUF1726) RG48_RS07735 PF13718 GNAT acetyltransferase 2 RG48_RS07735 PF05127 Helicase RG48_RS07735 PF17176 tRNA-binding domain RG48_RS07740 PF02230 Phospholipase/Carboxylesterase RG48_RS07745 PF13980 Uncharacterised protein family (UPF0370) RG48_RS07750 PF07687 Peptidase dimerisation domain RG48_RS07750 PF01546 Peptidase family M20/M25/M40 RG48_RS07755 PF03960 ArsC family RG48_RS07765 PF00873 AcrB/AcrD/AcrF family RG48_RS07770 PF00672 HAMP domain RG48_RS07770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS07770 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RG48_RS07770 PF07730 Histidine kinase RG48_RS07775 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS07775 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RG48_RS07775 PF13247 4Fe-4S dicluster domain RG48_RS07780 PF00293 NUDIX domain RG48_RS07785 PF06674 Protein of unknown function (DUF1176) RG48_RS07790 PF02779 Transketolase, pyrimidine binding domain RG48_RS07790 PF02780 Transketolase, C-terminal domain RG48_RS07790 PF00456 Transketolase, thiamine diphosphate binding domain RG48_RS07795 PF00923 Transaldolase/Fructose-6-phosphate aldolase RG48_RS07800 PF01515 Phosphate acetyl/butaryl transferase RG48_RS07800 PF00390 Malic enzyme, N-terminal domain RG48_RS07800 PF03949 Malic enzyme, NAD binding domain RG48_RS07805 PF00936 BMC domain RG48_RS07810 PF10662 Ethanolamine utilisation - propanediol utilisation RG48_RS07815 PF06249 Ethanolamine utilisation protein EutQ RG48_RS07820 PF01923 Cobalamin adenosyltransferase RG48_RS07825 PF01515 Phosphate acetyl/butaryl transferase RG48_RS07830 PF00936 BMC domain RG48_RS07835 PF03319 Ethanolamine utilisation protein EutN/carboxysome RG48_RS07840 PF00171 Aldehyde dehydrogenase family RG48_RS07850 PF00465 Iron-containing alcohol dehydrogenase RG48_RS07855 PF04346 Ethanolamine utilisation protein, EutH RG48_RS07860 PF06277 Ethanolamine utilisation protein EutA RG48_RS07865 PF06751 Ethanolamine ammonia lyase large subunit (EutB) RG48_RS07870 PF05985 Ethanolamine ammonia-lyase light chain (EutC) RG48_RS07875 PF00936 BMC domain RG48_RS07880 PF00936 BMC domain RG48_RS07880 PF16365 Ethanolamine utilization protein EutK C-terminus RG48_RS07885 PF12833 Helix-turn-helix domain RG48_RS07890 PF01218 Coproporphyrinogen III oxidase RG48_RS07895 PF01520 N-acetylmuramoyl-L-alanine amidase RG48_RS07900 PF00583 Acetyltransferase (GNAT) family RG48_RS07905 PF11143 Protein of unknown function (DUF2919) RG48_RS07910 PF06572 Protein of unknown function (DUF1131) RG48_RS07915 PF04261 Dyp-type peroxidase family RG48_RS07920 PF00144 Beta-lactamase RG48_RS07925 PF02378 Phosphotransferase system, EIIC RG48_RS07925 PF00367 phosphotransferase system, EIIB RG48_RS07930 PF01380 SIS domain RG48_RS07935 PF01418 Helix-turn-helix domain, rpiR family RG48_RS07935 PF01380 SIS domain RG48_RS07950 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS07955 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS07960 PF00005 ABC transporter RG48_RS07965 PF00291 Pyridoxal-phosphate dependent enzyme RG48_RS07970 PF05406 WGR domain RG48_RS07975 PF17263 Family of unknown function (DUF5329) RG48_RS07980 PF08543 Phosphomethylpyrimidine kinase RG48_RS07985 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RG48_RS07990 PF05524 PEP-utilising enzyme, N-terminal RG48_RS07990 PF02896 PEP-utilising enzyme, TIM barrel domain RG48_RS07990 PF00391 PEP-utilising enzyme, mobile domain RG48_RS07995 PF00381 PTS HPr component phosphorylation site RG48_RS08000 PF00291 Pyridoxal-phosphate dependent enzyme RG48_RS08015 PF04354 ZipA, C-terminal FtsZ-binding domain RG48_RS08020 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RG48_RS08020 PF03120 NAD-dependent DNA ligase OB-fold domain RG48_RS08020 PF00533 BRCA1 C Terminus (BRCT) domain RG48_RS08020 PF01653 NAD-dependent DNA ligase adenylation domain RG48_RS08020 PF12826 Helix-hairpin-helix motif RG48_RS08025 PF12843 Putative quorum-sensing-regulated virulence factor RG48_RS08030 PF13593 SBF-like CPA transporter family (DUF4137) RG48_RS08035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS08035 PF03466 LysR substrate binding domain RG48_RS08070 PF00749 tRNA synthetases class I (E and Q), catalytic domain RG48_RS08075 PF07037 Putative transcription regulator (DUF1323) RG48_RS08080 PF07037 Putative transcription regulator (DUF1323) RG48_RS08095 PF00563 EAL domain RG48_RS08095 PF05231 MASE1 RG48_RS08100 PF07662 Na+ dependent nucleoside transporter C-terminus RG48_RS08100 PF07670 Nucleoside recognition RG48_RS08100 PF01773 Na+ dependent nucleoside transporter N-terminus RG48_RS08105 PF01566 Natural resistance-associated macrophage protein RG48_RS08115 PF10697 Protein of unknown function (DUF2502) RG48_RS08120 PF00654 Voltage gated chloride channel RG48_RS08125 PF02685 Glucokinase RG48_RS08130 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS08135 PF02378 Phosphotransferase system, EIIC RG48_RS08140 PF00557 Metallopeptidase family M24 RG48_RS08140 PF01321 Creatinase/Prolidase N-terminal domain RG48_RS08145 PF05343 M42 glutamyl aminopeptidase RG48_RS08150 PF00391 PEP-utilising enzyme, mobile domain RG48_RS08150 PF00381 PTS HPr component phosphorylation site RG48_RS08150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS08150 PF05524 PEP-utilising enzyme, N-terminal RG48_RS08150 PF02896 PEP-utilising enzyme, TIM barrel domain RG48_RS08155 PF12833 Helix-turn-helix domain RG48_RS08160 PF00072 Response regulator receiver domain RG48_RS08160 PF04397 LytTr DNA-binding domain RG48_RS08165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS08165 PF07694 5TMR of 5TMR-LYT RG48_RS08165 PF06580 Histidine kinase RG48_RS08170 PF00155 Aminotransferase class I and II RG48_RS08180 PF03279 Bacterial lipid A biosynthesis acyltransferase RG48_RS08185 PF10810 Protein of unknown function (DUF2545) RG48_RS08200 PF10938 YfdX protein RG48_RS08205 PF02515 CoA-transferase family III RG48_RS08210 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RG48_RS08210 PF00205 Thiamine pyrophosphate enzyme, central domain RG48_RS08210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RG48_RS08215 PF03547 Membrane transport protein RG48_RS08220 PF02515 CoA-transferase family III RG48_RS08225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS08225 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS08225 PF00072 Response regulator receiver domain RG48_RS08225 PF01627 Hpt domain RG48_RS08225 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS08230 PF00072 Response regulator receiver domain RG48_RS08230 PF00196 Bacterial regulatory proteins, luxR family RG48_RS08235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS08235 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS08240 PF07690 Major Facilitator Superfamily RG48_RS08245 PF01609 Transposase DDE domain RG48_RS08245 PF05598 Transposase domain (DUF772) RG48_RS08255 PF00291 Pyridoxal-phosphate dependent enzyme RG48_RS08260 PF02447 GntP family permease RG48_RS08265 PF03466 LysR substrate binding domain RG48_RS08265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS08360 PF01381 Helix-turn-helix RG48_RS08360 PF00717 Peptidase S24-like RG48_RS08380 PF03796 DnaB-like helicase C terminal domain RG48_RS08380 PF00772 DnaB-like helicase N terminal domain RG48_RS08425 PF07102 Protein of unknown function (DUF1364) RG48_RS08460 PF03245 Bacteriophage Rz lysis protein RG48_RS08575 PF13356 Arm DNA-binding domain RG48_RS08575 PF00589 Phage integrase family RG48_RS08575 PF14659 Phage integrase, N-terminal SAM-like domain RG48_RS08585 PF01226 Formate/nitrite transporter RG48_RS08590 PF04333 MlaA lipoprotein RG48_RS08605 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RG48_RS08615 PF04175 Protein of unknown function (DUF406) RG48_RS08620 PF02803 Thiolase, C-terminal domain RG48_RS08620 PF00108 Thiolase, N-terminal domain RG48_RS08625 PF00378 Enoyl-CoA hydratase/isomerase RG48_RS08625 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RG48_RS08625 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RG48_RS08630 PF00300 Histidine phosphatase superfamily (branch 1) RG48_RS08635 PF00419 Fimbrial protein RG48_RS08640 PF00577 Outer membrane usher protein RG48_RS08640 PF13954 PapC N-terminal domain RG48_RS08640 PF13953 PapC C-terminal domain RG48_RS08645 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS08645 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS08650 PF00419 Fimbrial protein RG48_RS08655 PF00419 Fimbrial protein RG48_RS08660 PF00419 Fimbrial protein RG48_RS08665 PF11245 Protein of unknown function (DUF2544) RG48_RS08670 PF01713 Smr domain RG48_RS08675 PF05175 Methyltransferase small domain RG48_RS08680 PF01264 Chorismate synthase RG48_RS08685 PF03411 Penicillin-insensitive murein endopeptidase RG48_RS08690 PF01925 Sulfite exporter TauE/SafE RG48_RS08695 PF04315 Elongation factor P hydroxylase RG48_RS08700 PF08891 YfcL protein RG48_RS08705 PF01266 FAD dependent oxidoreductase RG48_RS08705 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RG48_RS08710 PF00109 Beta-ketoacyl synthase, N-terminal domain RG48_RS08710 PF02801 Beta-ketoacyl synthase, C-terminal domain RG48_RS08720 PF07690 Major Facilitator Superfamily RG48_RS08730 PF11890 Domain of unknown function (DUF3410) RG48_RS08730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RG48_RS08730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RG48_RS08735 PF01118 Semialdehyde dehydrogenase, NAD binding domain RG48_RS08735 PF02774 Semialdehyde dehydrogenase, dimerisation domain RG48_RS08740 PF01416 tRNA pseudouridine synthase RG48_RS08745 PF09335 SNARE associated Golgi protein RG48_RS08750 PF01039 Carboxyl transferase domain RG48_RS08750 PF17848 Acetyl-coA carboxylase zinc finger domain RG48_RS08755 PF02875 Mur ligase family, glutamate ligase domain RG48_RS08755 PF08245 Mur ligase middle domain RG48_RS08760 PF05036 Sporulation related domain RG48_RS08770 PF02674 Colicin V production protein RG48_RS08775 PF00156 Phosphoribosyl transferase domain RG48_RS08780 PF02441 Flavoprotein RG48_RS08785 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS08790 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS08795 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS08800 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS08805 PF00005 ABC transporter RG48_RS08815 PF01370 NAD dependent epimerase/dehydratase family RG48_RS08815 PF08338 Domain of unknown function (DUF1731) RG48_RS08820 PF02152 Dihydroneopterin aldolase RG48_RS08825 PF00043 Glutathione S-transferase, C-terminal domain RG48_RS08825 PF02798 Glutathione S-transferase, N-terminal domain RG48_RS08830 PF14834 Glutathione S-transferase, C-terminal domain RG48_RS08830 PF02798 Glutathione S-transferase, N-terminal domain RG48_RS08835 PF12850 Calcineurin-like phosphoesterase superfamily domain RG48_RS08840 PF00293 NUDIX domain RG48_RS08845 PF03606 C4-dicarboxylate anaerobic carrier RG48_RS08850 PF07085 DRTGG domain RG48_RS08850 PF01515 Phosphate acetyl/butaryl transferase RG48_RS08855 PF00871 Acetokinase family RG48_RS08865 PF04217 Protein of unknown function, DUF412 RG48_RS08870 PF03887 YfbU domain RG48_RS08875 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS08880 PF02080 TrkA-C domain RG48_RS08880 PF03600 Citrate transporter RG48_RS08890 PF00155 Aminotransferase class I and II RG48_RS08900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS08900 PF03466 LysR substrate binding domain RG48_RS08905 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RG48_RS08910 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RG48_RS08915 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RG48_RS08915 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RG48_RS08925 PF10531 SLBB domain RG48_RS08925 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RG48_RS08925 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RG48_RS08930 PF01568 Molydopterin dinucleotide binding domain RG48_RS08930 PF00384 Molybdopterin oxidoreductase RG48_RS08930 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RG48_RS08930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RG48_RS08935 PF00146 NADH dehydrogenase RG48_RS08940 PF12838 4Fe-4S dicluster domain RG48_RS08945 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RG48_RS08950 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RG48_RS08955 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RG48_RS08955 PF00361 Proton-conducting membrane transporter RG48_RS08960 PF00361 Proton-conducting membrane transporter RG48_RS08965 PF00361 Proton-conducting membrane transporter RG48_RS08985 PF08974 Domain of unknown function (DUF1877) RG48_RS08990 PF04389 Peptidase family M28 RG48_RS09005 PF12706 Beta-lactamase superfamily domain RG48_RS09010 PF13673 Acetyltransferase (GNAT) domain RG48_RS09015 PF05957 Bacterial protein of unknown function (DUF883) RG48_RS09020 PF00425 chorismate binding enzyme RG48_RS09025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RG48_RS09025 PF16582 Middle domain of thiamine pyrophosphate RG48_RS09025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RG48_RS09030 PF12697 Alpha/beta hydrolase family RG48_RS09035 PF00378 Enoyl-CoA hydratase/isomerase RG48_RS09040 PF13378 Enolase C-terminal domain-like RG48_RS09045 PF13193 AMP-binding enzyme C-terminal domain RG48_RS09045 PF00501 AMP-binding enzyme RG48_RS09060 PF00892 EamA-like transporter family RG48_RS09065 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RG48_RS09070 PF01522 Polysaccharide deacetylase RG48_RS09075 PF00551 Formyl transferase RG48_RS09075 PF01370 NAD dependent epimerase/dehydratase family RG48_RS09075 PF02911 Formyl transferase, C-terminal domain RG48_RS09080 PF00535 Glycosyl transferase family 2 RG48_RS09085 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RG48_RS09090 PF00300 Histidine phosphatase superfamily (branch 1) RG48_RS09095 PF00293 NUDIX domain RG48_RS09100 PF07437 YfaZ precursor RG48_RS09105 PF00994 Probable molybdopterin binding domain RG48_RS09110 PF01614 Bacterial transcriptional regulator RG48_RS09110 PF09339 IclR helix-turn-helix domain RG48_RS09115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RG48_RS09115 PF13378 Enolase C-terminal domain-like RG48_RS09120 PF07690 Major Facilitator Superfamily RG48_RS09125 PF03328 HpcH/HpaI aldolase/citrate lyase family RG48_RS09130 PF04754 Putative transposase, YhgA-like RG48_RS09135 PF02754 Cysteine-rich domain RG48_RS09135 PF13183 4Fe-4S dicluster domain RG48_RS09140 PF00890 FAD binding domain RG48_RS09145 PF04324 BFD-like [2Fe-2S] binding domain RG48_RS09145 PF01266 FAD dependent oxidoreductase RG48_RS09150 PF07690 Major Facilitator Superfamily RG48_RS09155 PF03009 Glycerophosphoryl diester phosphodiesterase family RG48_RS09175 PF00111 2Fe-2S iron-sulfur cluster binding domain RG48_RS09180 PF00268 Ribonucleotide reductase, small chain RG48_RS09190 PF03477 ATP cone domain RG48_RS09190 PF02867 Ribonucleotide reductase, barrel domain RG48_RS09190 PF00317 Ribonucleotide reductase, all-alpha domain RG48_RS09200 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat RG48_RS09200 PF12951 Passenger-associated-transport-repeat RG48_RS09200 PF03797 Autotransporter beta-domain RG48_RS09210 PF00521 DNA gyrase/topoisomerase IV, subunit A RG48_RS09210 PF03989 DNA gyrase C-terminal domain, beta-propeller RG48_RS09215 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) RG48_RS09220 PF06672 Protein of unknown function (DUF1175) RG48_RS09225 PF01835 MG2 domain RG48_RS09225 PF07703 Alpha-2-macroglobulin bait region domain RG48_RS09225 PF00207 Alpha-2-macroglobulin family RG48_RS09230 PF08486 Stage II sporulation protein RG48_RS09230 PF10062 Predicted secreted protein (DUF2300) RG48_RS09235 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) RG48_RS09240 PF02803 Thiolase, C-terminal domain RG48_RS09240 PF00108 Thiolase, N-terminal domain RG48_RS09245 PF02667 Short chain fatty acid transporter RG48_RS09250 PF01144 Coenzyme A transferase RG48_RS09255 PF01144 Coenzyme A transferase RG48_RS09260 PF00158 Sigma-54 interaction domain RG48_RS09260 PF00072 Response regulator receiver domain RG48_RS09260 PF02954 Bacterial regulatory protein, Fis family RG48_RS09265 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS09265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS09265 PF00989 PAS fold RG48_RS09270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS09270 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS09270 PF00072 Response regulator receiver domain RG48_RS09270 PF09456 RcsC Alpha-Beta-Loop (ABL) RG48_RS09280 PF00196 Bacterial regulatory proteins, luxR family RG48_RS09280 PF00072 Response regulator receiver domain RG48_RS09285 PF16359 RcsD-ABL domain RG48_RS09285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS09285 PF01627 Hpt domain RG48_RS09300 PF00267 Gram-negative porin RG48_RS09305 PF02424 ApbE family RG48_RS09310 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RG48_RS09310 PF02805 Metal binding domain of Ada RG48_RS09310 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RG48_RS09310 PF12833 Helix-turn-helix domain RG48_RS09315 PF13532 2OG-Fe(II) oxygenase superfamily RG48_RS09320 PF00005 ABC transporter RG48_RS09325 PF06039 Malate:quinone oxidoreductase (Mqo) RG48_RS09340 PF03974 Ecotin RG48_RS09350 PF12800 4Fe-4S binding domain RG48_RS09350 PF00037 4Fe-4S binding domain RG48_RS09350 PF13187 4Fe-4S dicluster domain RG48_RS09355 PF03927 NapD protein RG48_RS09360 PF01568 Molydopterin dinucleotide binding domain RG48_RS09360 PF00384 Molybdopterin oxidoreductase RG48_RS09360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RG48_RS09365 PF12800 4Fe-4S binding domain RG48_RS09365 PF12838 4Fe-4S dicluster domain RG48_RS09370 PF13237 4Fe-4S dicluster domain RG48_RS09370 PF12801 4Fe-4S binding domain RG48_RS09375 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) RG48_RS09380 PF03264 NapC/NirT cytochrome c family, N-terminal region RG48_RS09385 PF00005 ABC transporter RG48_RS09390 PF03379 CcmB protein RG48_RS09395 PF01578 Cytochrome C assembly protein RG48_RS09400 PF04995 Heme exporter protein D (CcmD) RG48_RS09405 PF03100 CcmE RG48_RS09410 PF01578 Cytochrome C assembly protein RG48_RS09410 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RG48_RS09415 PF08534 Redoxin RG48_RS09420 PF03918 Cytochrome C biogenesis protein RG48_RS09425 PF00072 Response regulator receiver domain RG48_RS09425 PF00196 Bacterial regulatory proteins, luxR family RG48_RS09435 PF03797 Autotransporter beta-domain RG48_RS09435 PF03212 Pertactin RG48_RS09435 PF16168 Adhesin of bacterial autotransporter system, probable stalk RG48_RS09445 PF00884 Sulfatase RG48_RS09445 PF11893 Domain of unknown function (DUF3413) RG48_RS09450 PF07208 Protein of unknown function (DUF1414) RG48_RS09455 PF04245 37-kD nucleoid-associated bacterial protein RG48_RS09460 PF01386 Ribosomal L25p family RG48_RS09465 PF04851 Type III restriction enzyme, res subunit RG48_RS09465 PF00271 Helicase conserved C-terminal domain RG48_RS09475 PF01479 S4 domain RG48_RS09475 PF00849 RNA pseudouridylate synthase RG48_RS09480 PF07690 Major Facilitator Superfamily RG48_RS09490 PF13989 YejG-like protein RG48_RS09495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RG48_RS09495 PF00005 ABC transporter RG48_RS09500 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS09500 PF12911 N-terminal TM domain of oligopeptide transport permease C RG48_RS09505 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS09510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS09515 PF12792 CSS motif domain associated with EAL RG48_RS09515 PF00563 EAL domain RG48_RS09520 PF00877 NlpC/P60 family RG48_RS09525 PF01569 PAP2 superfamily RG48_RS09530 PF02492 CobW/HypB/UreG, nucleotide-binding domain RG48_RS09530 PF07683 Cobalamin synthesis protein cobW C-terminal domain RG48_RS09535 PF08125 Mannitol dehydrogenase C-terminal domain RG48_RS09535 PF01232 Mannitol dehydrogenase Rossmann domain RG48_RS09540 PF08207 Elongation factor P (EF-P) KOW-like domain RG48_RS09540 PF01132 Elongation factor P (EF-P) OB domain RG48_RS09540 PF09285 Elongation factor P, C-terminal RG48_RS09545 PF03692 Putative zinc- or iron-chelating domain RG48_RS09550 PF07690 Major Facilitator Superfamily RG48_RS09555 PF00381 PTS HPr component phosphorylation site RG48_RS09555 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS09560 PF00294 pfkB family carbohydrate kinase RG48_RS09565 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS09565 PF02378 Phosphotransferase system, EIIC RG48_RS09570 PF00294 pfkB family carbohydrate kinase RG48_RS09575 PF04227 Indigoidine synthase A like protein RG48_RS09580 PF07662 Na+ dependent nucleoside transporter C-terminus RG48_RS09580 PF01773 Na+ dependent nucleoside transporter N-terminus RG48_RS09585 PF00027 Cyclic nucleotide-binding domain RG48_RS09590 PF01156 Inosine-uridine preferring nucleoside hydrolase RG48_RS09595 PF07662 Na+ dependent nucleoside transporter C-terminus RG48_RS09595 PF01773 Na+ dependent nucleoside transporter N-terminus RG48_RS09600 PF00294 pfkB family carbohydrate kinase RG48_RS09605 PF01261 Xylose isomerase-like TIM barrel RG48_RS09610 PF03601 Conserved hypothetical protein 698 RG48_RS09615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS09615 PF03466 LysR substrate binding domain RG48_RS09625 PF00324 Amino acid permease RG48_RS09630 PF07715 TonB-dependent Receptor Plug Domain RG48_RS09630 PF00593 TonB dependent receptor RG48_RS09635 PF00756 Putative esterase RG48_RS09645 PF01227 GTP cyclohydrolase I RG48_RS09650 PF04235 Protein of unknown function (DUF418) RG48_RS09660 PF00356 Bacterial regulatory proteins, lacI family RG48_RS09665 PF13407 Periplasmic binding protein domain RG48_RS09670 PF00005 ABC transporter RG48_RS09675 PF02653 Branched-chain amino acid transport system / permease component RG48_RS09680 PF01180 Dihydroorotate dehydrogenase RG48_RS09685 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RG48_RS09685 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS09690 PF10808 Protein of unknown function (DUF2542) RG48_RS09695 PF02698 DUF218 domain RG48_RS09700 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RG48_RS09700 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region RG48_RS09705 PF04172 LrgB-like family RG48_RS09710 PF03788 LrgA family RG48_RS09715 PF01207 Dihydrouridine synthase (Dus) RG48_RS09730 PF02321 Outer membrane efflux protein RG48_RS09740 PF09335 SNARE associated Golgi protein RG48_RS09745 PF04893 Yip1 domain RG48_RS09750 PF00768 D-alanyl-D-alanine carboxypeptidase RG48_RS09755 PF09330 D-lactate dehydrogenase, membrane binding RG48_RS09755 PF01565 FAD binding domain RG48_RS09760 PF01915 Glycosyl hydrolase family 3 C-terminal domain RG48_RS09760 PF14310 Fibronectin type III-like domain RG48_RS09760 PF00933 Glycosyl hydrolase family 3 N terminal domain RG48_RS09765 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RG48_RS09770 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS09775 PF00005 ABC transporter RG48_RS09780 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS09790 PF13411 MerR HTH family regulatory protein RG48_RS09795 PF06580 Histidine kinase RG48_RS09795 PF07694 5TMR of 5TMR-LYT RG48_RS09800 PF00072 Response regulator receiver domain RG48_RS09800 PF04397 LytTr DNA-binding domain RG48_RS09805 PF07308 Protein of unknown function (DUF1456) RG48_RS09810 PF06998 Protein of unknown function (DUF1307) RG48_RS09815 PF04434 SWIM zinc finger RG48_RS09820 PF05762 VWA domain containing CoxE-like protein RG48_RS09830 PF07728 AAA domain (dynein-related subfamily) RG48_RS09840 PF13569 Domain of unknown function (DUF4132) RG48_RS09845 PF13569 Domain of unknown function (DUF4132) RG48_RS09850 PF01588 Putative tRNA binding domain RG48_RS09850 PF09334 tRNA synthetases class I (M) RG48_RS09855 PF10609 NUBPL iron-transfer P-loop NTPase RG48_RS09860 PF10836 Protein of unknown function (DUF2574) RG48_RS09870 PF00419 Fimbrial protein RG48_RS09875 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS09875 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS09880 PF13953 PapC C-terminal domain RG48_RS09880 PF13954 PapC N-terminal domain RG48_RS09880 PF00577 Outer membrane usher protein RG48_RS09885 PF00419 Fimbrial protein RG48_RS09890 PF11776 Nickel/cobalt transporter regulator RG48_RS09895 PF03824 High-affinity nickel-transport protein RG48_RS09900 PF02583 Metal-sensitive transcriptional repressor RG48_RS09925 PF01527 Transposase RG48_RS09930 PF13276 HTH-like domain RG48_RS09930 PF13333 Integrase core domain RG48_RS09930 PF00665 Integrase core domain RG48_RS09945 PF02110 Hydroxyethylthiazole kinase family RG48_RS09950 PF08543 Phosphomethylpyrimidine kinase RG48_RS09955 PF01183 Glycosyl hydrolases family 25 RG48_RS09960 PF00392 Bacterial regulatory proteins, gntR family RG48_RS09960 PF07702 UTRA domain RG48_RS09965 PF00294 pfkB family carbohydrate kinase RG48_RS09970 PF03747 ADP-ribosylglycohydrolase RG48_RS09975 PF03825 Nucleoside H+ symporter RG48_RS09980 PF01791 DeoC/LacD family aldolase RG48_RS09985 PF01116 Fructose-bisphosphate aldolase class-II RG48_RS09990 PF08013 Tagatose 6 phosphate kinase RG48_RS09995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS10000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS10005 PF03611 PTS system sugar-specific permease component RG48_RS10010 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS10010 PF00107 Zinc-binding dehydrogenase RG48_RS10015 PF08220 DeoR-like helix-turn-helix domain RG48_RS10020 PF00781 Diacylglycerol kinase catalytic domain RG48_RS10035 PF02899 Phage integrase, N-terminal SAM-like domain RG48_RS10035 PF00589 Phage integrase family RG48_RS10075 PF05840 Bacteriophage replication gene A protein (GPA) RG48_RS10110 PF04606 Ogr/Delta-like zinc finger RG48_RS10115 PF01136 Peptidase family U32 RG48_RS10115 PF16325 Peptidase family U32 C-terminal domain RG48_RS10120 PF07411 Domain of unknown function (DUF1508) RG48_RS10130 PF00486 Transcriptional regulatory protein, C terminal RG48_RS10130 PF00072 Response regulator receiver domain RG48_RS10135 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS10135 PF00672 HAMP domain RG48_RS10135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS10140 PF07690 Major Facilitator Superfamily RG48_RS10145 PF00873 AcrB/AcrD/AcrF family RG48_RS10150 PF00873 AcrB/AcrD/AcrF family RG48_RS10155 PF13533 Biotin-lipoyl like RG48_RS10170 PF00092 von Willebrand factor type A domain RG48_RS10185 PF00012 Hsp70 protein RG48_RS10190 PF00730 HhH-GPD superfamily base excision DNA repair protein RG48_RS10190 PF06029 AlkA N-terminal domain RG48_RS10195 PF05231 MASE1 RG48_RS10195 PF08448 PAS fold RG48_RS10195 PF08447 PAS fold RG48_RS10195 PF13426 PAS domain RG48_RS10195 PF00563 EAL domain RG48_RS10195 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS10200 PF00485 Phosphoribulokinase / Uridine kinase family RG48_RS10205 PF00692 dUTPase RG48_RS10210 PF05170 AsmA family RG48_RS10215 PF03471 Transporter associated domain RG48_RS10215 PF00571 CBS domain RG48_RS10215 PF03741 Integral membrane protein TerC family RG48_RS10220 PF02563 Polysaccharide biosynthesis/export protein RG48_RS10220 PF10531 SLBB domain RG48_RS10220 PF18412 Outer-membrane lipoprotein Wza C-terminal domain RG48_RS10225 PF01451 Low molecular weight phosphotyrosine protein phosphatase RG48_RS10230 PF13614 AAA domain RG48_RS10230 PF02706 Chain length determinant protein RG48_RS10230 PF13807 G-rich domain on putative tyrosine kinase RG48_RS10235 PF00535 Glycosyl transferase family 2 RG48_RS10240 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS10245 PF00534 Glycosyl transferases group 1 RG48_RS10245 PF13439 Glycosyltransferase Family 4 RG48_RS10255 PF00535 Glycosyl transferase family 2 RG48_RS10260 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS10265 PF16363 GDP-mannose 4,6 dehydratase RG48_RS10270 PF01370 NAD dependent epimerase/dehydratase family RG48_RS10275 PF00293 NUDIX domain RG48_RS10280 PF00534 Glycosyl transferases group 1 RG48_RS10280 PF13579 Glycosyl transferase 4-like domain RG48_RS10285 PF00483 Nucleotidyl transferase RG48_RS10285 PF01050 Mannose-6-phosphate isomerase RG48_RS10290 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RG48_RS10290 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RG48_RS10290 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RG48_RS10290 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RG48_RS10295 PF02397 Bacterial sugar transferase RG48_RS10310 PF04230 Polysaccharide pyruvyl transferase RG48_RS10315 PF00534 Glycosyl transferases group 1 RG48_RS10315 PF13439 Glycosyltransferase Family 4 RG48_RS10325 PF00483 Nucleotidyl transferase RG48_RS10330 PF16363 GDP-mannose 4,6 dehydratase RG48_RS10335 PF04321 RmlD substrate binding domain RG48_RS10340 PF00483 Nucleotidyl transferase RG48_RS10345 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RG48_RS10350 PF01943 Polysaccharide biosynthesis protein RG48_RS10350 PF14667 Polysaccharide biosynthesis C-terminal domain RG48_RS10355 PF00535 Glycosyl transferase family 2 RG48_RS10360 PF00535 Glycosyl transferase family 2 RG48_RS10370 PF04138 GtrA-like protein RG48_RS10395 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RG48_RS10395 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RG48_RS10400 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RG48_RS10400 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RG48_RS10400 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RG48_RS10405 PF02706 Chain length determinant protein RG48_RS10410 PF01502 Phosphoribosyl-AMP cyclohydrolase RG48_RS10410 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RG48_RS10415 PF00977 Histidine biosynthesis protein RG48_RS10420 PF00977 Histidine biosynthesis protein RG48_RS10425 PF00117 Glutamine amidotransferase class-I RG48_RS10430 PF00475 Imidazoleglycerol-phosphate dehydratase RG48_RS10435 PF00155 Aminotransferase class I and II RG48_RS10440 PF00815 Histidinol dehydrogenase RG48_RS10445 PF01634 ATP phosphoribosyltransferase RG48_RS10445 PF08029 HisG, C-terminal domain RG48_RS10465 PF01370 NAD dependent epimerase/dehydratase family RG48_RS10470 PF03466 LysR substrate binding domain RG48_RS10470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS10475 PF13520 Amino acid permease RG48_RS10480 PF04143 Sulphur transport RG48_RS10485 PF01206 Sulfurtransferase TusA RG48_RS10490 PF08411 Exonuclease C-terminal RG48_RS10490 PF00929 Exonuclease RG48_RS10495 PF00768 D-alanyl-D-alanine carboxypeptidase RG48_RS10495 PF07943 Penicillin-binding protein 5, C-terminal domain RG48_RS10500 PF06445 GyrI-like small molecule binding domain RG48_RS10505 PF04632 Fusaric acid resistance protein family RG48_RS10510 PF04363 Protein of unknown function (DUF496) RG48_RS10515 PF10662 Ethanolamine utilisation - propanediol utilisation RG48_RS10525 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RG48_RS10530 PF02654 Cobalamin-5-phosphate synthase RG48_RS10535 PF02277 Phosphoribosyltransferase RG48_RS10540 PF03734 L,D-transpeptidase catalytic domain RG48_RS10540 PF17969 L,D-transpeptidase C-terminal domain RG48_RS10545 PF04198 Putative sugar-binding domain RG48_RS10550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS10555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS10560 PF03611 PTS system sugar-specific permease component RG48_RS10565 PF02502 Ribose/Galactose Isomerase RG48_RS10570 PF00455 DeoR C terminal sensor domain RG48_RS10570 PF08220 DeoR-like helix-turn-helix domain RG48_RS10580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS10585 PF03611 PTS system sugar-specific permease component RG48_RS10590 PF00834 Ribulose-phosphate 3 epimerase family RG48_RS10600 PF01380 SIS domain RG48_RS10625 PF14220 Domain of unknown function (DUF4329) RG48_RS10625 PF03527 RHS protein RG48_RS10625 PF05593 RHS Repeat RG48_RS10665 PF03466 LysR substrate binding domain RG48_RS10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS10670 PF03466 LysR substrate binding domain RG48_RS10680 PF01554 MatE RG48_RS10695 PF01709 Transcriptional regulator RG48_RS10700 PF01048 Phosphorylase superfamily RG48_RS10700 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus RG48_RS10705 PF00083 Sugar (and other) transporter RG48_RS10705 PF07690 Major Facilitator Superfamily RG48_RS10715 PF11924 Inverse autotransporter, beta-domain RG48_RS10715 PF09134 Invasin, domain 3 RG48_RS10715 PF02369 Bacterial Ig-like domain (group 1) RG48_RS10720 PF05598 Transposase domain (DUF772) RG48_RS10720 PF01609 Transposase DDE domain RG48_RS10745 PF06167 Glucose-regulated metallo-peptidase M90 RG48_RS10760 PF01292 Prokaryotic cytochrome b561 RG48_RS10765 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment RG48_RS10770 PF01794 Ferric reductase like transmembrane component RG48_RS10775 PF00174 Oxidoreductase molybdopterin binding domain RG48_RS10780 PF00576 HIUase/Transthyretin family RG48_RS10785 PF00072 Response regulator receiver domain RG48_RS10785 PF00486 Transcriptional regulatory protein, C terminal RG48_RS10790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS10790 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS10805 PF00267 Gram-negative porin RG48_RS10820 PF01966 HD domain RG48_RS10825 PF00145 C-5 cytosine-specific DNA methylase RG48_RS10825 PF18284 DNA methylase N-terminal domain RG48_RS10830 PF03852 DNA mismatch endonuclease Vsr RG48_RS10835 PF00892 EamA-like transporter family RG48_RS10840 PF05661 Protein of unknown function (DUF808) RG48_RS10845 PF09926 Uncharacterized small protein (DUF2158) RG48_RS10855 PF17151 Periplasmic sensor domain RG48_RS10855 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS10865 PF10733 Protein of unknown function (DUF2525) RG48_RS10875 PF10781 Dextransucrase DSRB RG48_RS10880 PF00196 Bacterial regulatory proteins, luxR family RG48_RS10885 PF01311 Bacterial export proteins, family 1 RG48_RS10890 PF01313 Bacterial export proteins, family 3 RG48_RS10895 PF00813 FliP family RG48_RS10900 PF04347 Flagellar biosynthesis protein, FliO RG48_RS10905 PF16973 Flagellar motor switch protein FliN N-terminal RG48_RS10905 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RG48_RS10910 PF02154 Flagellar motor switch protein FliM RG48_RS10910 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RG48_RS10915 PF03748 Flagellar basal body-associated protein FliL RG48_RS10920 PF02120 Flagellar hook-length control protein FliK RG48_RS10925 PF02050 Flagellar FliJ protein RG48_RS10930 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RG48_RS10930 PF18269 T3SS EscN ATPase C-terminal domain RG48_RS10935 PF02108 Flagellar assembly protein FliH RG48_RS10940 PF14841 FliG middle domain RG48_RS10940 PF01706 FliG C-terminal domain RG48_RS10940 PF14842 FliG N-terminal domain RG48_RS10945 PF08345 Flagellar M-ring protein C-terminal RG48_RS10945 PF01514 Secretory protein of YscJ/FliF family RG48_RS10950 PF02049 Flagellar hook-basal body complex protein FliE RG48_RS10970 PF02586 SOS response associated peptidase (SRAP) RG48_RS10975 PF01206 Sulfurtransferase TusA RG48_RS10980 PF04143 Sulphur transport RG48_RS10990 PF13987 YedD-like protein RG48_RS10995 PF02806 Alpha amylase, C-terminal all-beta domain RG48_RS10995 PF00128 Alpha amylase, catalytic domain RG48_RS11000 PF05400 Flagellar protein FliT RG48_RS11005 PF02561 Flagellar protein FliS RG48_RS11010 PF02465 Flagellar hook-associated protein 2 N-terminus RG48_RS11010 PF07195 Flagellar hook-associated protein 2 C-terminus RG48_RS11020 PF12445 Flagellin protein RG48_RS11020 PF00700 Bacterial flagellin C-terminal helical region RG48_RS11020 PF00669 Bacterial flagellin N-terminal helical region RG48_RS11025 PF04542 Sigma-70 region 2 RG48_RS11025 PF04539 Sigma-70 region 3 RG48_RS11025 PF04545 Sigma-70, region 4 RG48_RS11030 PF02899 Phage integrase, N-terminal SAM-like domain RG48_RS11035 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS11040 PF00291 Pyridoxal-phosphate dependent enzyme RG48_RS11045 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS11050 PF00005 ABC transporter RG48_RS11055 PF03472 Autoinducer binding domain RG48_RS11055 PF00196 Bacterial regulatory proteins, luxR family RG48_RS11060 PF10769 Protein of unknown function (DUF2594) RG48_RS11070 PF00196 Bacterial regulatory proteins, luxR family RG48_RS11070 PF00072 Response regulator receiver domain RG48_RS11075 PF02151 UvrB/uvrC motif RG48_RS11075 PF08459 UvrC Helix-hairpin-helix N-terminal RG48_RS11075 PF01541 GIY-YIG catalytic domain RG48_RS11080 PF01066 CDP-alcohol phosphatidyltransferase RG48_RS11100 PF02810 SEC-C motif RG48_RS11100 PF03695 Uncharacterised protein family (UPF0149) RG48_RS11105 PF03222 Tryptophan/tyrosine permease family RG48_RS11110 PF10678 Protein of unknown function (DUF2492) RG48_RS11115 PF00210 Ferritin-like domain RG48_RS11120 PF13992 YecR-like lipoprotein RG48_RS11135 PF10964 Protein of unknown function (DUF2766) RG48_RS11140 PF00210 Ferritin-like domain RG48_RS11150 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RG48_RS11155 PF00005 ABC transporter RG48_RS11160 PF02653 Branched-chain amino acid transport system / permease component RG48_RS11165 PF02358 Trehalose-phosphatase RG48_RS11170 PF00982 Glycosyltransferase family 20 RG48_RS11175 PF00582 Universal stress protein family RG48_RS11180 PF05247 Flagellar transcriptional activator (FlhD) RG48_RS11185 PF05280 Flagellar transcriptional activator (FlhC) RG48_RS11190 PF01618 MotA/TolQ/ExbB proton channel family RG48_RS11195 PF13677 Membrane MotB of proton-channel complex MotA/MotB RG48_RS11195 PF00691 OmpA family RG48_RS11200 PF02895 Signal transducing histidine kinase, homodimeric domain RG48_RS11200 PF01627 Hpt domain RG48_RS11200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS11200 PF01584 CheW-like domain RG48_RS11200 PF09078 CheY binding RG48_RS11205 PF01584 CheW-like domain RG48_RS11210 PF02203 Tar ligand binding domain homologue RG48_RS11210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RG48_RS11210 PF00672 HAMP domain RG48_RS11215 PF00672 HAMP domain RG48_RS11215 PF02203 Tar ligand binding domain homologue RG48_RS11215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RG48_RS11220 PF03705 CheR methyltransferase, all-alpha domain RG48_RS11220 PF01739 CheR methyltransferase, SAM binding domain RG48_RS11225 PF00072 Response regulator receiver domain RG48_RS11225 PF01339 CheB methylesterase RG48_RS11230 PF00072 Response regulator receiver domain RG48_RS11235 PF04344 Chemotaxis phosphatase, CheZ RG48_RS11240 PF01312 FlhB HrpN YscU SpaS Family RG48_RS11245 PF00771 FHIPEP family RG48_RS11250 PF06366 Flagellar protein FlhE RG48_RS11255 PF07007 Lysozyme inhibitor LprI RG48_RS11260 PF03485 Arginyl tRNA synthetase N terminal domain RG48_RS11260 PF05746 DALR anticodon binding domain RG48_RS11260 PF00750 tRNA synthetases class I (R) RG48_RS11270 PF06185 YecM protein RG48_RS11275 PF03932 CutC family RG48_RS11280 PF03264 NapC/NirT cytochrome c family, N-terminal region RG48_RS11285 PF18364 Molybdopterin oxidoreductase N-terminal domain RG48_RS11285 PF00384 Molybdopterin oxidoreductase RG48_RS11285 PF01568 Molydopterin dinucleotide binding domain RG48_RS11290 PF08003 Protein of unknown function (DUF1698) RG48_RS11295 PF13649 Methyltransferase domain RG48_RS11300 PF01124 MAPEG family RG48_RS11305 PF01904 Protein of unknown function DUF72 RG48_RS11315 PF01336 OB-fold nucleic acid binding domain RG48_RS11315 PF00152 tRNA synthetases class II (D, K and N) RG48_RS11315 PF02938 GAD domain RG48_RS11320 PF00293 NUDIX domain RG48_RS11325 PF01709 Transcriptional regulator RG48_RS11330 PF02075 Crossover junction endodeoxyribonuclease RuvC RG48_RS11335 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family RG48_RS11345 PF01330 RuvA N terminal domain RG48_RS11345 PF07499 RuvA, C-terminal domain RG48_RS11350 PF05496 Holliday junction DNA helicase RuvB P-loop domain RG48_RS11350 PF17864 RuvB AAA lid domain RG48_RS11350 PF05491 RuvB C-terminal winged helix domain RG48_RS11355 PF00950 ABC 3 transport family RG48_RS11360 PF00005 ABC transporter RG48_RS11365 PF01297 Zinc-uptake complex component A periplasmic RG48_RS11370 PF08525 Opacity-associated protein A N-terminal motif RG48_RS11370 PF01551 Peptidase family M23 RG48_RS11370 PF01476 LysM domain RG48_RS11375 PF03279 Bacterial lipid A biosynthesis acyltransferase RG48_RS11380 PF02887 Pyruvate kinase, alpha/beta domain RG48_RS11380 PF00224 Pyruvate kinase, barrel domain RG48_RS11385 PF01380 SIS domain RG48_RS11385 PF01418 Helix-turn-helix domain, rpiR family RG48_RS11400 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RG48_RS11400 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RG48_RS11405 PF00920 Dehydratase family RG48_RS11410 PF01081 KDPG and KHG aldolase RG48_RS11415 PF02222 ATP-grasp domain RG48_RS11420 PF07130 YebG protein RG48_RS11425 PF13995 YebF-like protein RG48_RS11440 PF04391 Protein of unknown function (DUF533) RG48_RS11450 PF00326 Prolyl oligopeptidase family RG48_RS11450 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RG48_RS11455 PF00929 Exonuclease RG48_RS11460 PF00795 Carbon-nitrogen hydrolase RG48_RS11465 PF06440 DNA polymerase III, theta subunit RG48_RS11470 PF04234 CopC domain RG48_RS11475 PF05425 Copper resistance protein D RG48_RS11480 PF10709 Protein of unknown function (DUF2511) RG48_RS11490 PF00149 Calcineurin-like phosphoesterase RG48_RS11495 PF07358 Protein of unknown function (DUF1482) RG48_RS11500 PF07351 Protein of unknown function (DUF1480) RG48_RS11505 PF01189 16S rRNA methyltransferase RsmB/F RG48_RS11505 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF RG48_RS11505 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF RG48_RS11510 PF02470 MlaD protein RG48_RS11515 PF04403 Paraquat-inducible protein A RG48_RS11520 PF13185 GAF domain RG48_RS11525 PF17516 ProQ C-terminal domain RG48_RS11525 PF04352 ProQ/FINO family RG48_RS11530 PF03572 Peptidase family S41 RG48_RS11530 PF11818 C-terminal domain of tail specific protease (DUF3340) RG48_RS11530 PF00595 PDZ domain RG48_RS11530 PF17804 Tail specific protease N-terminal domain RG48_RS11535 PF01435 Peptidase family M48 RG48_RS11540 PF07690 Major Facilitator Superfamily RG48_RS11545 PF01614 Bacterial transcriptional regulator RG48_RS11545 PF09339 IclR helix-turn-helix domain RG48_RS11550 PF13996 YobH-like protein RG48_RS11555 PF13998 MgrB protein RG48_RS11560 PF13974 YebO-like protein RG48_RS11570 PF10736 Protein of unknown function (DUF2627) RG48_RS11575 PF00313 'Cold-shock' DNA-binding domain RG48_RS11580 PF13847 Methyltransferase domain RG48_RS11585 PF02659 Putative manganese efflux pump RG48_RS11595 PF06173 Protein of unknown function (DUF986) RG48_RS11600 PF03613 PTS system mannose/fructose/sorbose family IID component RG48_RS11605 PF03609 PTS system sorbose-specific iic component RG48_RS11610 PF03830 PTS system sorbose subfamily IIB component RG48_RS11610 PF03610 PTS system fructose IIA component RG48_RS11625 PF03471 Transporter associated domain RG48_RS11625 PF03741 Integral membrane protein TerC family RG48_RS11630 PF00563 EAL domain RG48_RS11630 PF12792 CSS motif domain associated with EAL RG48_RS11635 PF03313 Serine dehydratase alpha chain RG48_RS11635 PF03315 Serine dehydratase beta chain RG48_RS11640 PF00293 NUDIX domain RG48_RS11645 PF04715 Anthranilate synthase component I, N terminal region RG48_RS11645 PF00425 chorismate binding enzyme RG48_RS11650 PF03701 Uncharacterised protein family (UPF0181) RG48_RS11655 PF08986 Domain of unknown function (DUF1889) RG48_RS11665 PF01609 Transposase DDE domain RG48_RS11665 PF05598 Transposase domain (DUF772) RG48_RS11670 PF01042 Endoribonuclease L-PSP RG48_RS11675 PF13307 Helicase C-terminal domain RG48_RS11675 PF04851 Type III restriction enzyme, res subunit RG48_RS11680 PF00814 Glycoprotease family RG48_RS11685 PF03843 Outer membrane lipoprotein Slp family RG48_RS11690 PF13193 AMP-binding enzyme C-terminal domain RG48_RS11690 PF00501 AMP-binding enzyme RG48_RS11695 PF01612 3'-5' exonuclease RG48_RS11695 PF00570 HRDC domain RG48_RS11700 PF00111 2Fe-2S iron-sulfur cluster binding domain RG48_RS11700 PF00970 Oxidoreductase FAD-binding domain RG48_RS11700 PF00175 Oxidoreductase NAD-binding domain RG48_RS11705 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RG48_RS11705 PF00355 Rieske [2Fe-2S] domain RG48_RS11710 PF02028 BCCT, betaine/carnitine/choline family transporter RG48_RS11715 PF00180 Isocitrate/isopropylmalate dehydrogenase RG48_RS11720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS11720 PF03466 LysR substrate binding domain RG48_RS11725 PF01810 LysE type translocator RG48_RS11730 PF09313 Domain of unknown function (DUF1971) RG48_RS11735 PF08956 Domain of unknown function (DUF1869) RG48_RS11740 PF04226 Transglycosylase associated protein RG48_RS11755 PF13185 GAF domain RG48_RS11755 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS11760 PF03891 Domain of unknown function (DUF333) RG48_RS11765 PF04343 Protein of unknown function, DUF488 RG48_RS11770 PF07690 Major Facilitator Superfamily RG48_RS11775 PF12833 Helix-turn-helix domain RG48_RS11775 PF02311 AraC-like ligand binding domain RG48_RS11780 PF04284 Protein of unknown function (DUF441) RG48_RS11790 PF04073 Aminoacyl-tRNA editing domain RG48_RS11795 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS11795 PF17155 Gammaproteobacterial periplasmic sensor domain RG48_RS11800 PF17158 Membrane-associated sensor, integral membrane domain RG48_RS11800 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS11805 PF04285 Protein of unknown function (DUF444) RG48_RS11810 PF08298 PrkA AAA domain RG48_RS11810 PF06798 PrkA serine protein kinase C-terminal domain RG48_RS11815 PF06629 MltA-interacting protein MipA RG48_RS11820 PF00248 Aldo/keto reductase family RG48_RS11825 PF01263 Aldose 1-epimerase RG48_RS11830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RG48_RS11830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RG48_RS11835 PF01641 SelR domain RG48_RS11840 PF07023 Protein of unknown function (DUF1315) RG48_RS11845 PF00107 Zinc-binding dehydrogenase RG48_RS11845 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS11850 PF00083 Sugar (and other) transporter RG48_RS11855 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS11855 PF00107 Zinc-binding dehydrogenase RG48_RS11860 PF01116 Fructose-bisphosphate aldolase class-II RG48_RS11865 PF00294 pfkB family carbohydrate kinase RG48_RS11870 PF00248 Aldo/keto reductase family RG48_RS11875 PF08220 DeoR-like helix-turn-helix domain RG48_RS11875 PF00455 DeoR C terminal sensor domain RG48_RS11880 PF00083 Sugar (and other) transporter RG48_RS11885 PF00857 Isochorismatase family RG48_RS11890 PF00710 Asparaginase, N-terminal RG48_RS11890 PF17763 Glutaminase/Asparaginase C-terminal domain RG48_RS11895 PF01343 Peptidase family S49 RG48_RS11900 PF00881 Nitroreductase family RG48_RS11910 PF02769 AIR synthase related protein, C-terminal domain RG48_RS11910 PF00586 AIR synthase related protein, N-terminal domain RG48_RS11915 PF01131 DNA topoisomerase RG48_RS11915 PF01751 Toprim domain RG48_RS11920 PF06889 Protein of unknown function (DUF1266) RG48_RS11925 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RG48_RS11925 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RG48_RS11930 PF07383 Protein of unknown function (DUF1496) RG48_RS11935 PF00293 NUDIX domain RG48_RS11940 PF01066 CDP-alcohol phosphatidyltransferase RG48_RS11945 PF00581 Rhodanese-like domain RG48_RS11950 PF00005 ABC transporter RG48_RS11955 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS11960 PF13416 Bacterial extracellular solute-binding protein RG48_RS11965 PF02627 Carboxymuconolactone decarboxylase family RG48_RS11970 PF09335 SNARE associated Golgi protein RG48_RS11980 PF09335 SNARE associated Golgi protein RG48_RS11985 PF03372 Endonuclease/Exonuclease/phosphatase family RG48_RS11995 PF00202 Aminotransferase class-III RG48_RS12005 PF00171 Aldehyde dehydrogenase family RG48_RS12010 PF04996 Succinylarginine dihydrolase RG48_RS12015 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RG48_RS12020 PF07813 LTXXQ motif family protein RG48_RS12025 PF05962 HutD RG48_RS12035 PF02540 NAD synthase RG48_RS12040 PF04355 SmpA / OmlA family RG48_RS12050 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS12055 PF02378 Phosphotransferase system, EIIC RG48_RS12060 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit RG48_RS12065 PF07883 Cupin domain RG48_RS12065 PF12833 Helix-turn-helix domain RG48_RS12070 PF02056 Family 4 glycosyl hydrolase RG48_RS12070 PF11975 Family 4 glycosyl hydrolase C-terminal domain RG48_RS12075 PF04794 YdjC-like protein RG48_RS12085 PF06628 Catalase-related immune-responsive RG48_RS12085 PF00199 Catalase RG48_RS12085 PF18011 C-terminal domain found in long catalases RG48_RS12090 PF10729 Cell division activator CedA RG48_RS12105 PF00375 Sodium:dicarboxylate symporter family RG48_RS12110 PF04307 LexA-binding, inner membrane-associated putative hydrolase RG48_RS12115 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS12120 PF14002 YniB-like protein RG48_RS12125 PF03881 Fructosamine kinase RG48_RS12130 PF11080 Endoribonuclease GhoS RG48_RS12135 PF00294 pfkB family carbohydrate kinase RG48_RS12140 PF04338 Protein of unknown function, DUF481 RG48_RS12150 PF07906 ShET2 enterotoxin, N-terminal region RG48_RS12165 PF03129 Anticodon binding domain RG48_RS12165 PF02824 TGS domain RG48_RS12165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RG48_RS12165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RG48_RS12170 PF00707 Translation initiation factor IF-3, C-terminal domain RG48_RS12170 PF05198 Translation initiation factor IF-3, N-terminal domain RG48_RS12175 PF01632 Ribosomal protein L35 RG48_RS12180 PF00453 Ribosomal protein L20 RG48_RS12195 PF01409 tRNA synthetases class II core domain (F) RG48_RS12195 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RG48_RS12200 PF03484 tRNA synthetase B5 domain RG48_RS12200 PF03147 Ferredoxin-fold anticodon binding domain RG48_RS12200 PF01588 Putative tRNA binding domain RG48_RS12200 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RG48_RS12200 PF03483 B3/4 domain RG48_RS12205 PF00216 Bacterial DNA-binding protein RG48_RS12210 PF01032 FecCD transport family RG48_RS12215 PF00255 Glutathione peroxidase RG48_RS12220 PF00005 ABC transporter RG48_RS12225 PF00877 NlpC/P60 family RG48_RS12230 PF00563 EAL domain RG48_RS12235 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RG48_RS12240 PF10636 Hemin uptake protein hemP RG48_RS12245 PF00793 DAHP synthetase I family RG48_RS12250 PF03618 Kinase/pyrophosphorylase RG48_RS12255 PF02896 PEP-utilising enzyme, TIM barrel domain RG48_RS12255 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RG48_RS12255 PF00391 PEP-utilising enzyme, mobile domain RG48_RS12260 PF00501 AMP-binding enzyme RG48_RS12260 PF13193 AMP-binding enzyme C-terminal domain RG48_RS12270 PF01494 FAD binding domain RG48_RS12275 PF00766 Electron transfer flavoprotein FAD-binding domain RG48_RS12275 PF01012 Electron transfer flavoprotein domain RG48_RS12280 PF01012 Electron transfer flavoprotein domain RG48_RS12290 PF02311 AraC-like ligand binding domain RG48_RS12290 PF12833 Helix-turn-helix domain RG48_RS12295 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RG48_RS12295 PF02770 Acyl-CoA dehydrogenase, middle domain RG48_RS12295 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RG48_RS12300 PF01144 Coenzyme A transferase RG48_RS12305 PF01487 Type I 3-dehydroquinase RG48_RS12310 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RG48_RS12310 PF08501 Shikimate dehydrogenase substrate binding domain RG48_RS12315 PF07690 Major Facilitator Superfamily RG48_RS12320 PF07690 Major Facilitator Superfamily RG48_RS12325 PF08965 Domain of unknown function (DUF1870) RG48_RS12335 PF01594 AI-2E family transporter RG48_RS12345 PF01565 FAD binding domain RG48_RS12345 PF13183 4Fe-4S dicluster domain RG48_RS12345 PF02913 FAD linked oxidases, C-terminal domain RG48_RS12350 PF03061 Thioesterase superfamily RG48_RS12355 PF15930 Domain of unknown function RG48_RS12360 PF01521 Iron-sulphur cluster biosynthesis RG48_RS12365 PF01458 Uncharacterized protein family (UPF0051) RG48_RS12370 PF00005 ABC transporter RG48_RS12375 PF01458 Uncharacterized protein family (UPF0051) RG48_RS12380 PF00266 Aminotransferase class-V RG48_RS12385 PF02657 Fe-S metabolism associated domain RG48_RS12390 PF17969 L,D-transpeptidase C-terminal domain RG48_RS12390 PF03734 L,D-transpeptidase catalytic domain RG48_RS12390 PF01476 LysM domain RG48_RS12395 PF04728 Lipoprotein leucine-zipper RG48_RS12400 PF00224 Pyruvate kinase, barrel domain RG48_RS12400 PF02887 Pyruvate kinase, alpha/beta domain RG48_RS12405 PF10965 Protein of unknown function (DUF2767) RG48_RS12410 PF12800 4Fe-4S binding domain RG48_RS12410 PF13247 4Fe-4S dicluster domain RG48_RS12415 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain RG48_RS12415 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 RG48_RS12425 PF13247 4Fe-4S dicluster domain RG48_RS12430 PF01292 Prokaryotic cytochrome b561 RG48_RS12440 PF13454 FAD-NAD(P)-binding RG48_RS12445 PF08803 Putative mono-oxygenase ydhR RG48_RS12460 PF03212 Pertactin RG48_RS12460 PF16168 Adhesin of bacterial autotransporter system, probable stalk RG48_RS12465 PF01554 MatE RG48_RS12470 PF00677 Lumazine binding domain RG48_RS12480 PF07690 Major Facilitator Superfamily RG48_RS12485 PF03466 LysR substrate binding domain RG48_RS12485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS12490 PF00356 Bacterial regulatory proteins, lacI family RG48_RS12505 PF07690 Major Facilitator Superfamily RG48_RS12510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RG48_RS12510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RG48_RS12515 PF00877 NlpC/P60 family RG48_RS12520 PF00462 Glutaredoxin RG48_RS12525 PF00271 Helicase conserved C-terminal domain RG48_RS12525 PF08494 DEAD/H associated RG48_RS12525 PF00270 DEAD/DEAH box helicase RG48_RS12530 PF00929 Exonuclease RG48_RS12535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RG48_RS12540 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RG48_RS12545 PF16925 Tetracyclin repressor-like, C-terminal domain RG48_RS12545 PF00440 Bacterial regulatory proteins, tetR family RG48_RS12550 PF06945 Protein of unknown function (DUF1289) RG48_RS12555 PF00248 Aldo/keto reductase family RG48_RS12560 PF00080 Copper/zinc superoxide dismutase (SODC) RG48_RS12565 PF04632 Fusaric acid resistance protein family RG48_RS12570 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS12570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS12575 PF07869 Protein of unknown function (DUF1656) RG48_RS12580 PF01047 MarR family RG48_RS12585 PF05433 Glycine zipper 2TM domain RG48_RS12590 PF03702 Anhydro-N-acetylmuramic acid kinase RG48_RS12595 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme RG48_RS12600 PF01243 Pyridoxamine 5'-phosphate oxidase RG48_RS12600 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RG48_RS12605 PF01479 S4 domain RG48_RS12605 PF00579 tRNA synthetases class I (W and Y) RG48_RS12610 PF08543 Phosphomethylpyrimidine kinase RG48_RS12615 PF02798 Glutathione S-transferase, N-terminal domain RG48_RS12615 PF00043 Glutathione S-transferase, C-terminal domain RG48_RS12620 PF00854 POT family RG48_RS12630 PF00633 Helix-hairpin-helix motif RG48_RS12630 PF10576 Iron-sulfur binding domain of endonuclease III RG48_RS12630 PF00730 HhH-GPD superfamily base excision DNA repair protein RG48_RS12635 PF02508 Rnf-Nqr subunit, membrane protein RG48_RS12640 PF04205 FMN-binding domain RG48_RS12645 PF03116 NQR2, RnfD, RnfE family RG48_RS12650 PF13375 RnfC Barrel sandwich hybrid domain RG48_RS12650 PF12838 4Fe-4S dicluster domain RG48_RS12650 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RG48_RS12650 PF10531 SLBB domain RG48_RS12655 PF04060 Putative Fe-S cluster RG48_RS12660 PF02508 Rnf-Nqr subunit, membrane protein RG48_RS12665 PF10754 Protein of unknown function (DUF2569) RG48_RS12670 PF05321 Haemolysin expression modulating protein RG48_RS12685 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RG48_RS12685 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RG48_RS12690 PF00962 Adenosine/AMP deaminase RG48_RS12695 PF00155 Aminotransferase class I and II RG48_RS12700 PF00367 phosphotransferase system, EIIB RG48_RS12700 PF02378 Phosphotransferase system, EIIC RG48_RS12705 PF00356 Bacterial regulatory proteins, lacI family RG48_RS12705 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RG48_RS12715 PF00440 Bacterial regulatory proteins, tetR family RG48_RS12720 PF00703 Glycosyl hydrolases family 2 RG48_RS12720 PF02837 Glycosyl hydrolases family 2, sugar binding domain RG48_RS12720 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RG48_RS12730 PF03573 outer membrane porin, OprD family RG48_RS12735 PF06097 Bacterial protein of unknown function (DUF945) RG48_RS12740 PF01238 Phosphomannose isomerase type I RG48_RS12745 PF05681 Fumarate hydratase (Fumerase) RG48_RS12745 PF05683 Fumarase C-terminus RG48_RS12750 PF10415 Fumarase C C-terminus RG48_RS12750 PF00206 Lyase RG48_RS12755 PF05472 DNA replication terminus site-binding protein (Ter protein) RG48_RS12760 PF00672 HAMP domain RG48_RS12760 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS12760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS12765 PF00486 Transcriptional regulatory protein, C terminal RG48_RS12765 PF00072 Response regulator receiver domain RG48_RS12770 PF06942 GlpM protein RG48_RS12780 PF13520 Amino acid permease RG48_RS12790 PF07338 Protein of unknown function (DUF1471) RG48_RS12795 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RG48_RS12795 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RG48_RS12795 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RG48_RS12800 PF02233 NAD(P) transhydrogenase beta subunit RG48_RS12805 PF01594 AI-2E family transporter RG48_RS12810 PF00893 Small Multidrug Resistance protein RG48_RS12815 PF00893 Small Multidrug Resistance protein RG48_RS12820 PF00089 Trypsin RG48_RS12840 PF07690 Major Facilitator Superfamily RG48_RS12845 PF03466 LysR substrate binding domain RG48_RS12845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS12850 PF00480 ROK family RG48_RS12860 PF00654 Voltage gated chloride channel RG48_RS12865 PF02613 Nitrate reductase delta subunit RG48_RS12870 PF04976 DMSO reductase anchor subunit (DmsC) RG48_RS12875 PF12800 4Fe-4S binding domain RG48_RS12875 PF13247 4Fe-4S dicluster domain RG48_RS12880 PF01568 Molydopterin dinucleotide binding domain RG48_RS12880 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RG48_RS12880 PF00384 Molybdopterin oxidoreductase RG48_RS12885 PF01568 Molydopterin dinucleotide binding domain RG48_RS12885 PF00384 Molybdopterin oxidoreductase RG48_RS12885 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RG48_RS12890 PF06649 Protein of unknown function (DUF1161) RG48_RS12895 PF06788 Uncharacterised protein family (UPF0257) RG48_RS12900 PF13302 Acetyltransferase (GNAT) domain RG48_RS12905 PF06932 Protein of unknown function (DUF1283) RG48_RS12910 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RG48_RS12920 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RG48_RS12920 PF13378 Enolase C-terminal domain-like RG48_RS12925 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS12925 PF00107 Zinc-binding dehydrogenase RG48_RS12935 PF00589 Phage integrase family RG48_RS12935 PF12167 Arm DNA-binding domain RG48_RS12980 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) RG48_RS12985 PF01848 Hok/gef family RG48_RS13000 PF06147 Protein of unknown function (DUF968) RG48_RS13005 PF03589 Antitermination protein RG48_RS13015 PF00313 'Cold-shock' DNA-binding domain RG48_RS13020 PF04971 Bacteriophage P21 holin S RG48_RS13025 PF07041 Protein of unknown function (DUF1327) RG48_RS13030 PF00959 Phage lysozyme RG48_RS13035 PF10721 Protein of unknown function (DUF2514) RG48_RS13040 PF00313 'Cold-shock' DNA-binding domain RG48_RS13055 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system RG48_RS13085 PF06316 Enterobacterial Ail/Lom protein RG48_RS13090 PF07484 Phage Tail Collar Domain RG48_RS13090 PF08400 Prophage tail fibre N-terminal RG48_RS13090 PF03335 Phage tail fibre repeat RG48_RS13095 PF07484 Phage Tail Collar Domain RG48_RS13095 PF03335 Phage tail fibre repeat RG48_RS13100 PF02413 Caudovirales tail fibre assembly protein, lambda gpK RG48_RS13105 PF00239 Resolvase, N terminal domain RG48_RS13105 PF02796 Helix-turn-helix domain of resolvase RG48_RS13115 PF07690 Major Facilitator Superfamily RG48_RS13115 PF00083 Sugar (and other) transporter RG48_RS13120 PF01232 Mannitol dehydrogenase Rossmann domain RG48_RS13120 PF08125 Mannitol dehydrogenase C-terminal domain RG48_RS13125 PF14001 YdfZ protein RG48_RS13130 PF00392 Bacterial regulatory proteins, gntR family RG48_RS13130 PF07729 FCD domain RG48_RS13135 PF00106 short chain dehydrogenase RG48_RS13140 PF01432 Peptidase family M3 RG48_RS13145 PF02464 Competence-damaged protein RG48_RS13150 PF04076 Bacterial OB fold (BOF) protein RG48_RS13155 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS13165 PF07690 Major Facilitator Superfamily RG48_RS13170 PF00892 EamA-like transporter family RG48_RS13175 PF13999 MarB protein RG48_RS13180 PF12833 Helix-turn-helix domain RG48_RS13185 PF01047 MarR family RG48_RS13190 PF01914 MarC family integral membrane protein RG48_RS13195 PF07690 Major Facilitator Superfamily RG48_RS13205 PF03466 LysR substrate binding domain RG48_RS13205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS13210 PF00171 Aldehyde dehydrogenase family RG48_RS13215 PF04960 Glutaminase RG48_RS13220 PF13811 Domain of unknown function (DUF4186) RG48_RS13225 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS13235 PF01232 Mannitol dehydrogenase Rossmann domain RG48_RS13235 PF08125 Mannitol dehydrogenase C-terminal domain RG48_RS13245 PF01062 Bestrophin, RFP-TM, chloride channel RG48_RS13250 PF13649 Methyltransferase domain RG48_RS13255 PF03992 Antibiotic biosynthesis monooxygenase RG48_RS13260 PF01791 DeoC/LacD family aldolase RG48_RS13265 PF13407 Periplasmic binding protein domain RG48_RS13270 PF02653 Branched-chain amino acid transport system / permease component RG48_RS13275 PF02653 Branched-chain amino acid transport system / permease component RG48_RS13280 PF00005 ABC transporter RG48_RS13285 PF04198 Putative sugar-binding domain RG48_RS13290 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RG48_RS13290 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RG48_RS13295 PF13018 Extended Signal Peptide of Type V secretion system RG48_RS13300 PF01381 Helix-turn-helix RG48_RS13305 PF13657 HipA N-terminal domain RG48_RS13305 PF07804 HipA-like C-terminal domain RG48_RS13320 PF00419 Fimbrial protein RG48_RS13325 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS13325 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS13330 PF00577 Outer membrane usher protein RG48_RS13330 PF13953 PapC C-terminal domain RG48_RS13335 PF00419 Fimbrial protein RG48_RS13340 PF00419 Fimbrial protein RG48_RS13345 PF09160 FimH, mannose binding RG48_RS13350 PF00384 Molybdopterin oxidoreductase RG48_RS13355 PF17073 Two-component-system connector protein RG48_RS13360 PF12833 Helix-turn-helix domain RG48_RS13365 PF00884 Sulfatase RG48_RS13370 PF04055 Radical SAM superfamily RG48_RS13370 PF13186 Iron-sulfur cluster-binding domain RG48_RS13375 PF00005 ABC transporter RG48_RS13375 PF06472 ABC transporter transmembrane region 2 RG48_RS13380 PF07715 TonB-dependent Receptor Plug Domain RG48_RS13385 PF00675 Insulinase (Peptidase family M16) RG48_RS13385 PF05193 Peptidase M16 inactive domain RG48_RS13400 PF00282 Pyridoxal-dependent decarboxylase conserved domain RG48_RS13405 PF13520 Amino acid permease RG48_RS13410 PF02638 Glycosyl hydrolase-like 10 RG48_RS13415 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS13420 PF00563 EAL domain RG48_RS13420 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS13420 PF13426 PAS domain RG48_RS13425 PF01427 D-ala-D-ala dipeptidase RG48_RS13430 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS13435 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS13440 PF12911 N-terminal TM domain of oligopeptide transport permease C RG48_RS13440 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS13445 PF00005 ABC transporter RG48_RS13445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RG48_RS13450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RG48_RS13450 PF00005 ABC transporter RG48_RS13455 PF02566 OsmC-like protein RG48_RS13465 PF10684 Putative biofilm-dependent modulation protein RG48_RS13470 PF08136 30S ribosomal protein subunit S22 family RG48_RS13475 PF00390 Malic enzyme, N-terminal domain RG48_RS13475 PF03949 Malic enzyme, NAD binding domain RG48_RS13480 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS13480 PF00107 Zinc-binding dehydrogenase RG48_RS13485 PF01381 Helix-turn-helix RG48_RS13495 PF01292 Prokaryotic cytochrome b561 RG48_RS13500 PF09163 Formate dehydrogenase N, transmembrane RG48_RS13500 PF12800 4Fe-4S binding domain RG48_RS13500 PF13247 4Fe-4S dicluster domain RG48_RS13510 PF00892 EamA-like transporter family RG48_RS13515 PF00267 Gram-negative porin RG48_RS13530 PF07690 Major Facilitator Superfamily RG48_RS13535 PF01568 Molydopterin dinucleotide binding domain RG48_RS13535 PF14710 Respiratory nitrate reductase alpha N-terminal RG48_RS13535 PF00384 Molybdopterin oxidoreductase RG48_RS13540 PF13247 4Fe-4S dicluster domain RG48_RS13540 PF14711 Respiratory nitrate reductase beta C-terminal RG48_RS13545 PF02613 Nitrate reductase delta subunit RG48_RS13550 PF02665 Nitrate reductase gamma subunit RG48_RS13555 PF02567 Phenazine biosynthesis-like protein RG48_RS13560 PF00797 N-acetyltransferase RG48_RS13565 PF01613 Flavin reductase like domain RG48_RS13570 PF01361 Tautomerase enzyme RG48_RS13575 PF13808 DDE_Tnp_1-associated RG48_RS13575 PF01609 Transposase DDE domain RG48_RS13595 PF05593 RHS Repeat RG48_RS13595 PF03527 RHS protein RG48_RS13595 PF14220 Domain of unknown function (DUF4329) RG48_RS13600 PF04717 Type VI secretion system, phage-baseplate injector RG48_RS13605 PF17520 Family of unknown function (DUF5445) RG48_RS13610 PF13417 Glutathione S-transferase, N-terminal domain RG48_RS13615 PF00324 Amino acid permease RG48_RS13635 PF00593 TonB dependent receptor RG48_RS13635 PF07715 TonB-dependent Receptor Plug Domain RG48_RS13640 PF00392 Bacterial regulatory proteins, gntR family RG48_RS13640 PF07729 FCD domain RG48_RS13645 PF16884 N-terminal domain of oxidoreductase RG48_RS13645 PF00107 Zinc-binding dehydrogenase RG48_RS13655 PF00583 Acetyltransferase (GNAT) family RG48_RS13660 PF04657 Putative inner membrane exporter, YdcZ RG48_RS13665 PF10735 Protein of unknown function (DUF2526) RG48_RS13670 PF10753 Toxin GhoT_OrtT RG48_RS13685 PF00171 Aldehyde dehydrogenase family RG48_RS13690 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS13695 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS13700 PF00005 ABC transporter RG48_RS13700 PF08402 TOBE domain RG48_RS13705 PF13416 Bacterial extracellular solute-binding protein RG48_RS13710 PF00392 Bacterial regulatory proteins, gntR family RG48_RS13710 PF00155 Aminotransferase class I and II RG48_RS13715 PF01381 Helix-turn-helix RG48_RS13715 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system RG48_RS13725 PF10829 Protein of unknown function (DUF2554) RG48_RS13730 PF01136 Peptidase family U32 RG48_RS13730 PF12392 Collagenase RG48_RS13735 PF01381 Helix-turn-helix RG48_RS13735 PF07883 Cupin domain RG48_RS13740 PF03594 Benzoate membrane transport protein RG48_RS13745 PF07282 Putative transposase DNA-binding domain RG48_RS13745 PF01385 Probable transposase RG48_RS13745 PF12323 Helix-turn-helix domain RG48_RS13750 PF01797 Transposase IS200 like RG48_RS13755 PF11769 Protein of unknown function (DUF3313) RG48_RS13760 PF03848 Tellurite resistance protein TehB RG48_RS13765 PF03595 Voltage-dependent anion channel RG48_RS13770 PF18836 Beta solenoid repeat from YDCK RG48_RS13775 PF13302 Acetyltransferase (GNAT) domain RG48_RS13780 PF04325 Protein of unknown function (DUF465) RG48_RS13790 PF04349 Periplasmic glucan biosynthesis protein, MdoG RG48_RS13800 PF07063 Domain of unknown function (DUF1338) RG48_RS13805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS13805 PF03466 LysR substrate binding domain RG48_RS13810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RG48_RS13810 PF02203 Tar ligand binding domain homologue RG48_RS13810 PF00672 HAMP domain RG48_RS13815 PF01609 Transposase DDE domain RG48_RS13815 PF05598 Transposase domain (DUF772) RG48_RS13830 PF00665 Integrase core domain RG48_RS13830 PF13333 Integrase core domain RG48_RS13830 PF13276 HTH-like domain RG48_RS13835 PF01848 Hok/gef family RG48_RS13845 PF01292 Prokaryotic cytochrome b561 RG48_RS13850 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RG48_RS13850 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RG48_RS13855 PF00171 Aldehyde dehydrogenase family RG48_RS13860 PF02698 DUF218 domain RG48_RS13865 PF00271 Helicase conserved C-terminal domain RG48_RS13865 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RG48_RS13865 PF00270 DEAD/DEAH box helicase RG48_RS13865 PF04408 Helicase associated domain (HA2) RG48_RS13865 PF11898 Domain of unknown function (DUF3418) RG48_RS13870 PF02525 Flavodoxin-like fold RG48_RS13875 PF00782 Dual specificity phosphatase, catalytic domain RG48_RS13880 PF12146 Serine aminopeptidase, S33 RG48_RS13880 PF12147 Putative methyltransferase RG48_RS13890 PF01066 CDP-alcohol phosphatidyltransferase RG48_RS13895 PF10971 Protein of unknown function (DUF2773) RG48_RS13900 PF00248 Aldo/keto reductase family RG48_RS13910 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS13915 PF08223 PaaX-like protein C-terminal domain RG48_RS13915 PF07848 PaaX-like protein RG48_RS13920 PF14535 AMP-binding enzyme C-terminal domain RG48_RS13920 PF00501 AMP-binding enzyme RG48_RS13925 PF00108 Thiolase, N-terminal domain RG48_RS13925 PF02803 Thiolase, C-terminal domain RG48_RS13930 PF03061 Thioesterase superfamily RG48_RS13935 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RG48_RS13935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RG48_RS13935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RG48_RS13940 PF00378 Enoyl-CoA hydratase/isomerase RG48_RS13945 PF00378 Enoyl-CoA hydratase/isomerase RG48_RS13950 PF00175 Oxidoreductase NAD-binding domain RG48_RS13950 PF00970 Oxidoreductase FAD-binding domain RG48_RS13950 PF00111 2Fe-2S iron-sulfur cluster binding domain RG48_RS13955 PF01883 Iron-sulfur cluster assembly protein RG48_RS13960 PF05138 Phenylacetic acid catabolic protein RG48_RS13965 PF06243 Phenylacetic acid degradation B RG48_RS13970 PF05138 Phenylacetic acid catabolic protein RG48_RS13975 PF00171 Aldehyde dehydrogenase family RG48_RS13975 PF01575 MaoC like domain RG48_RS13980 PF02728 Copper amine oxidase, N3 domain RG48_RS13980 PF07833 Copper amine oxidase N-terminal domain RG48_RS13980 PF01179 Copper amine oxidase, enzyme domain RG48_RS13980 PF02727 Copper amine oxidase, N2 domain RG48_RS13985 PF00171 Aldehyde dehydrogenase family RG48_RS13990 PF14525 AraC-binding-like domain RG48_RS13990 PF12833 Helix-turn-helix domain RG48_RS13995 PF07027 Protein of unknown function (DUF1318) RG48_RS14000 PF13617 YnbE-like lipoprotein RG48_RS14005 PF11739 Dicarboxylate transport RG48_RS14010 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RG48_RS14010 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RG48_RS14015 PF03724 META domain RG48_RS14020 PF03891 Domain of unknown function (DUF333) RG48_RS14025 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RG48_RS14025 PF10371 Domain of unknown function RG48_RS14025 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RG48_RS14025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RG48_RS14025 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RG48_RS14030 PF00267 Gram-negative porin RG48_RS14035 PF00582 Universal stress protein family RG48_RS14040 PF01171 PP-loop family RG48_RS14045 PF00270 DEAD/DEAH box helicase RG48_RS14045 PF03880 DbpA RNA binding domain RG48_RS14045 PF00271 Helicase conserved C-terminal domain RG48_RS14055 PF01544 CorA-like Mg2+ transporter protein RG48_RS14060 PF08448 PAS fold RG48_RS14060 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS14065 PF01713 Smr domain RG48_RS14080 PF07687 Peptidase dimerisation domain RG48_RS14080 PF01546 Peptidase family M20/M25/M40 RG48_RS14085 PF01546 Peptidase family M20/M25/M40 RG48_RS14095 PF03806 AbgT putative transporter family RG48_RS14100 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RG48_RS14100 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RG48_RS14105 PF00027 Cyclic nucleotide-binding domain RG48_RS14105 PF00325 Bacterial regulatory proteins, crp family RG48_RS14110 PF00582 Universal stress protein family RG48_RS14115 PF10749 Protein of unknown function (DUF2534) RG48_RS14120 PF00924 Mechanosensitive ion channel RG48_RS14125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS14135 PF03466 LysR substrate binding domain RG48_RS14135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS14140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS14140 PF03466 LysR substrate binding domain RG48_RS14145 PF12146 Serine aminopeptidase, S33 RG48_RS14155 PF00246 Zinc carboxypeptidase RG48_RS14160 PF13378 Enolase C-terminal domain-like RG48_RS14160 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RG48_RS14165 PF08534 Redoxin RG48_RS14170 PF18024 Helix-turn-helix domain RG48_RS14170 PF13188 PAS domain RG48_RS14170 PF00158 Sigma-54 interaction domain RG48_RS14175 PF05128 Domain of unknown function (DUF697) RG48_RS14180 PF04317 YcjX-like family, DUF463 RG48_RS14185 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RG48_RS14185 PF00356 Bacterial regulatory proteins, lacI family RG48_RS14190 PF09381 Outer membrane protein G (OmpG) RG48_RS14195 PF00005 ABC transporter RG48_RS14195 PF03459 TOBE domain RG48_RS14195 PF17912 MalK OB fold domain RG48_RS14200 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS14205 PF03636 Glycosyl hydrolase family 65, N-terminal domain RG48_RS14205 PF03632 Glycosyl hydrolase family 65 central catalytic domain RG48_RS14205 PF03633 Glycosyl hydrolase family 65, C-terminal domain RG48_RS14215 PF01261 Xylose isomerase-like TIM barrel RG48_RS14220 PF00107 Zinc-binding dehydrogenase RG48_RS14225 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS14230 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS14235 PF01547 Bacterial extracellular solute-binding protein RG48_RS14240 PF00128 Alpha amylase, catalytic domain RG48_RS14245 PF00581 Rhodanese-like domain RG48_RS14250 PF09584 Phage shock protein PspD (Phageshock_PspD) RG48_RS14255 PF04024 PspC domain RG48_RS14260 PF06667 Phage shock protein B RG48_RS14265 PF04012 PspA/IM30 family RG48_RS14270 PF00158 Sigma-54 interaction domain RG48_RS14270 PF02954 Bacterial regulatory protein, Fis family RG48_RS14275 PF00202 Aminotransferase class-III RG48_RS14280 PF01266 FAD dependent oxidoreductase RG48_RS14285 PF00171 Aldehyde dehydrogenase family RG48_RS14295 PF07883 Cupin domain RG48_RS14295 PF01381 Helix-turn-helix RG48_RS14300 PF07722 Peptidase C26 RG48_RS14305 PF00120 Glutamine synthetase, catalytic domain RG48_RS14310 PF00324 Amino acid permease RG48_RS14315 PF10820 Protein of unknown function (DUF2543) RG48_RS14325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS14330 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS14335 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS14335 PF12911 N-terminal TM domain of oligopeptide transport permease C RG48_RS14340 PF00005 ABC transporter RG48_RS14340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RG48_RS14345 PF00005 ABC transporter RG48_RS14350 PF04480 Protein of unknown function (DUF559) RG48_RS14365 PF17876 Cold shock domain RG48_RS14365 PF08206 Ribonuclease B OB domain RG48_RS14365 PF00773 RNB domain RG48_RS14365 PF00575 S1 RNA binding domain RG48_RS14375 PF00563 EAL domain RG48_RS14375 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS14375 PF13426 PAS domain RG48_RS14385 PF08220 DeoR-like helix-turn-helix domain RG48_RS14385 PF00455 DeoR C terminal sensor domain RG48_RS14390 PF05433 Glycine zipper 2TM domain RG48_RS14395 PF01253 Translation initiation factor SUI1 RG48_RS14400 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RG48_RS14405 PF18073 Rubredoxin metal binding domain RG48_RS14410 PF06305 Lipopolysaccharide assembly protein A domain RG48_RS14415 PF01569 PAP2 superfamily RG48_RS14420 PF00925 GTP cyclohydrolase II RG48_RS14425 PF00330 Aconitase family (aconitate hydratase) RG48_RS14425 PF00694 Aconitase C-terminal domain RG48_RS14445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS14445 PF03466 LysR substrate binding domain RG48_RS14455 PF08272 Topoisomerase I zinc-ribbon-like RG48_RS14455 PF01396 Topoisomerase DNA binding C4 zinc finger RG48_RS14455 PF01131 DNA topoisomerase RG48_RS14455 PF01751 Toprim domain RG48_RS14460 PF10692 Protein of unknown function (DUF2498) RG48_RS14465 PF08496 Peptidase family S49 N-terminal RG48_RS14465 PF01343 Peptidase family S49 RG48_RS14475 PF00106 short chain dehydrogenase RG48_RS14480 PF12557 Cob(I)alamin adenosyltransferase N terminal RG48_RS14480 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RG48_RS14485 PF01479 S4 domain RG48_RS14485 PF00849 RNA pseudouridylate synthase RG48_RS14490 PF09972 Predicted membrane protein (DUF2207) RG48_RS14495 PF09972 Predicted membrane protein (DUF2207) RG48_RS14500 PF01300 Telomere recombination RG48_RS14505 PF02811 PHP domain RG48_RS14510 PF08255 Trp-operon Leader Peptide RG48_RS14515 PF00425 chorismate binding enzyme RG48_RS14515 PF04715 Anthranilate synthase component I, N terminal region RG48_RS14520 PF00117 Glutamine amidotransferase class-I RG48_RS14520 PF02885 Glycosyl transferase family, helical bundle domain RG48_RS14520 PF00591 Glycosyl transferase family, a/b domain RG48_RS14525 PF00218 Indole-3-glycerol phosphate synthase RG48_RS14525 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RG48_RS14530 PF00291 Pyridoxal-phosphate dependent enzyme RG48_RS14535 PF00290 Tryptophan synthase alpha chain RG48_RS14540 PF10685 Stress-induced bacterial acidophilic repeat motif RG48_RS14545 PF05974 Domain of unknown function (DUF892) RG48_RS14550 PF05974 Domain of unknown function (DUF892) RG48_RS14555 PF03922 OmpW family RG48_RS14565 PF04279 Intracellular septation protein A RG48_RS14570 PF03061 Thioesterase superfamily RG48_RS14575 PF03544 Gram-negative bacterial TonB protein C-terminal RG48_RS14580 PF03795 YCII-related domain RG48_RS14585 PF00239 Resolvase, N terminal domain RG48_RS14585 PF02796 Helix-turn-helix domain of resolvase RG48_RS14660 PF06791 Prophage tail length tape measure protein RG48_RS14780 PF10721 Protein of unknown function (DUF2514) RG48_RS14785 PF00959 Phage lysozyme RG48_RS14800 PF03589 Antitermination protein RG48_RS14810 PF05866 Endodeoxyribonuclease RusA RG48_RS14815 PF07102 Protein of unknown function (DUF1364) RG48_RS14835 PF06440 DNA polymerase III, theta subunit RG48_RS14930 PF06630 Enterobacterial exodeoxyribonuclease VIII RG48_RS14930 PF12684 PDDEXK-like domain of unknown function (DUF3799) RG48_RS14955 PF02254 TrkA-N domain RG48_RS14955 PF07885 Ion channel RG48_RS14965 PF13396 Phospholipase_D-nuclease N-terminal RG48_RS14965 PF13091 PLD-like domain RG48_RS14970 PF04269 Protein of unknown function, DUF440 RG48_RS14975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RG48_RS14975 PF00005 ABC transporter RG48_RS14980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RG48_RS14980 PF00005 ABC transporter RG48_RS14985 PF12911 N-terminal TM domain of oligopeptide transport permease C RG48_RS14985 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS14990 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS14995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS15005 PF01914 MarC family integral membrane protein RG48_RS15010 PF00171 Aldehyde dehydrogenase family RG48_RS15010 PF00465 Iron-containing alcohol dehydrogenase RG48_RS15015 PF00265 Thymidine kinase RG48_RS15020 PF00816 H-NS histone family RG48_RS15025 PF00483 Nucleotidyl transferase RG48_RS15030 PF00072 Response regulator receiver domain RG48_RS15035 PF01734 Patatin-like phospholipase RG48_RS15040 PF02810 SEC-C motif RG48_RS15045 PF00551 Formyl transferase RG48_RS15045 PF01842 ACT domain RG48_RS15065 PF02665 Nitrate reductase gamma subunit RG48_RS15070 PF02613 Nitrate reductase delta subunit RG48_RS15075 PF14711 Respiratory nitrate reductase beta C-terminal RG48_RS15075 PF13247 4Fe-4S dicluster domain RG48_RS15080 PF01568 Molydopterin dinucleotide binding domain RG48_RS15080 PF00384 Molybdopterin oxidoreductase RG48_RS15080 PF14710 Respiratory nitrate reductase alpha N-terminal RG48_RS15085 PF07690 Major Facilitator Superfamily RG48_RS15095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS15095 PF07730 Histidine kinase RG48_RS15095 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RG48_RS15095 PF00672 HAMP domain RG48_RS15100 PF00072 Response regulator receiver domain RG48_RS15100 PF00196 Bacterial regulatory proteins, luxR family RG48_RS15105 PF11924 Inverse autotransporter, beta-domain RG48_RS15110 PF02635 DsrE/DsrF-like family RG48_RS15115 PF04752 ChaC-like protein RG48_RS15120 PF06150 ChaB RG48_RS15125 PF01699 Sodium/calcium exchanger protein RG48_RS15135 PF13940 Toxin Ldr, type I toxin-antitoxin system RG48_RS15140 PF13940 Toxin Ldr, type I toxin-antitoxin system RG48_RS15150 PF00793 DAHP synthetase I family RG48_RS15155 PF13369 Transglutaminase-like superfamily RG48_RS15160 PF04247 Invasion gene expression up-regulator, SirB RG48_RS15165 PF13847 Methyltransferase domain RG48_RS15165 PF17827 PrmC N-terminal domain RG48_RS15170 PF00472 RF-1 domain RG48_RS15170 PF03462 PCRF domain RG48_RS15175 PF01488 Shikimate / quinate 5-dehydrogenase RG48_RS15175 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RG48_RS15175 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RG48_RS15180 PF03550 Outer membrane lipoprotein LolB RG48_RS15185 PF00288 GHMP kinases N terminal domain RG48_RS15185 PF08544 GHMP kinases C terminal RG48_RS15190 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RG48_RS15190 PF14572 Phosphoribosyl synthetase-associated domain RG48_RS15195 PF00916 Sulfate permease family RG48_RS15195 PF01740 STAS domain RG48_RS15200 PF10762 Protein of unknown function (DUF2583) RG48_RS15205 PF01195 Peptidyl-tRNA hydrolase RG48_RS15210 PF01926 50S ribosome-binding GTPase RG48_RS15210 PF06071 Protein of unknown function (DUF933) RG48_RS15215 PF00589 Phage integrase family RG48_RS15215 PF13356 Arm DNA-binding domain RG48_RS15225 PF01527 Transposase RG48_RS15245 PF00271 Helicase conserved C-terminal domain RG48_RS15280 PF00589 Phage integrase family RG48_RS15280 PF02899 Phage integrase, N-terminal SAM-like domain RG48_RS15285 PF04002 RadC-like JAB domain RG48_RS15300 PF01381 Helix-turn-helix RG48_RS15375 PF03797 Autotransporter beta-domain RG48_RS15375 PF03212 Pertactin RG48_RS15385 PF01609 Transposase DDE domain RG48_RS15385 PF05598 Transposase domain (DUF772) RG48_RS15390 PF03797 Autotransporter beta-domain RG48_RS15390 PF03212 Pertactin RG48_RS15395 PF02954 Bacterial regulatory protein, Fis family RG48_RS15395 PF00989 PAS fold RG48_RS15395 PF00158 Sigma-54 interaction domain RG48_RS15400 PF02733 Dak1 domain RG48_RS15405 PF02734 DAK2 domain RG48_RS15410 PF00391 PEP-utilising enzyme, mobile domain RG48_RS15410 PF00381 PTS HPr component phosphorylation site RG48_RS15410 PF03610 PTS system fructose IIA component RG48_RS15410 PF05524 PEP-utilising enzyme, N-terminal RG48_RS15420 PF01204 Trehalase RG48_RS15430 PF04226 Transglycosylase associated protein RG48_RS15435 PF07317 Flagellar regulator YcgR RG48_RS15435 PF07238 PilZ domain RG48_RS15440 PF01464 Transglycosylase SLT domain RG48_RS15450 PF17676 LD-carboxypeptidase C-terminal domain RG48_RS15450 PF02016 LD-carboxypeptidase N-terminal domain RG48_RS15455 PF03471 Transporter associated domain RG48_RS15455 PF00999 Sodium/hydrogen exchanger family RG48_RS15455 PF02080 TrkA-C domain RG48_RS15460 PF01168 Alanine racemase, N-terminal domain RG48_RS15460 PF00842 Alanine racemase, C-terminal domain RG48_RS15465 PF01266 FAD dependent oxidoreductase RG48_RS15470 PF04293 SpoVR like protein RG48_RS15475 PF00392 Bacterial regulatory proteins, gntR family RG48_RS15475 PF07840 FadR C-terminal domain RG48_RS15480 PF06450 Bacterial Na+/H+ antiporter B (NhaB) RG48_RS15485 PF02600 Disulfide bond formation protein DsbB RG48_RS15490 PF11798 IMS family HHH motif RG48_RS15490 PF11799 impB/mucB/samB family C-terminal domain RG48_RS15490 PF13438 Domain of unknown function (DUF4113) RG48_RS15490 PF00817 impB/mucB/samB family RG48_RS15495 PF00717 Peptidase S24-like RG48_RS15500 PF06109 Haemolysin E (HlyE) RG48_RS15505 PF06109 Haemolysin E (HlyE) RG48_RS15510 PF03692 Putative zinc- or iron-chelating domain RG48_RS15515 PF01557 Fumarylacetoacetate (FAA) hydrolase family RG48_RS15520 PF05166 YcgL domain RG48_RS15525 PF04151 Bacterial pre-peptidase C-terminal domain RG48_RS15530 PF05666 Fels-1 Prophage Protein-like RG48_RS15540 PF03775 Septum formation inhibitor MinC, C-terminal domain RG48_RS15540 PF05209 Septum formation inhibitor MinC, N-terminal domain RG48_RS15545 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RG48_RS15550 PF03776 Septum formation topological specificity factor MinE RG48_RS15560 PF03797 Autotransporter beta-domain RG48_RS15565 PF03797 Autotransporter beta-domain RG48_RS15585 PF13436 Glycine-zipper domain RG48_RS15590 PF16456 YmgD protein RG48_RS15615 PF10798 Biofilm development protein YmgB/AriR RG48_RS15625 PF10798 Biofilm development protein YmgB/AriR RG48_RS15630 PF04940 Sensors of blue-light using FAD RG48_RS15630 PF00563 EAL domain RG48_RS15635 PF13411 MerR HTH family regulatory protein RG48_RS15640 PF07166 Protein of unknown function (DUF1398) RG48_RS15655 PF00180 Isocitrate/isopropylmalate dehydrogenase RG48_RS15660 PF00849 RNA pseudouridylate synthase RG48_RS15665 PF00293 NUDIX domain RG48_RS15675 PF04356 Protein of unknown function (DUF489) RG48_RS15680 PF08328 Adenylosuccinate lyase C-terminal RG48_RS15680 PF00206 Lyase RG48_RS15685 PF00486 Transcriptional regulatory protein, C terminal RG48_RS15685 PF00072 Response regulator receiver domain RG48_RS15690 PF08918 PhoQ Sensor RG48_RS15690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS15695 PF08007 Cupin superfamily protein RG48_RS15700 PF07687 Peptidase dimerisation domain RG48_RS15700 PF01546 Peptidase family M20/M25/M40 RG48_RS15710 PF00005 ABC transporter RG48_RS15710 PF08402 TOBE domain RG48_RS15715 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS15720 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS15725 PF13416 Bacterial extracellular solute-binding protein RG48_RS15730 PF02146 Sir2 family RG48_RS15735 PF00480 ROK family RG48_RS15740 PF12704 MacB-like periplasmic core domain RG48_RS15740 PF02687 FtsX-like permease family RG48_RS15745 PF00005 ABC transporter RG48_RS15750 PF12704 MacB-like periplasmic core domain RG48_RS15750 PF02687 FtsX-like permease family RG48_RS15755 PF01757 Acyltransferase family RG48_RS15760 PF02559 CarD-like/TRCF domain RG48_RS15760 PF03461 TRCF domain RG48_RS15760 PF00271 Helicase conserved C-terminal domain RG48_RS15760 PF17757 UvrB interaction domain RG48_RS15760 PF00270 DEAD/DEAH box helicase RG48_RS15765 PF01476 LysM domain RG48_RS15765 PF03734 L,D-transpeptidase catalytic domain RG48_RS15765 PF17969 L,D-transpeptidase C-terminal domain RG48_RS15770 PF07338 Protein of unknown function (DUF1471) RG48_RS15775 PF00440 Bacterial regulatory proteins, tetR family RG48_RS15780 PF05433 Glycine zipper 2TM domain RG48_RS15785 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS15790 PF05728 Uncharacterised protein family (UPF0227) RG48_RS15795 PF00933 Glycosyl hydrolase family 3 N terminal domain RG48_RS15800 PF01636 Phosphotransferase enzyme family RG48_RS15805 PF13036 Peptidoglycan-synthase activator LpoB RG48_RS15810 PF07233 Protein of unknown function (DUF1425) RG48_RS15815 PF01230 HIT domain RG48_RS15820 PF07715 TonB-dependent Receptor Plug Domain RG48_RS15820 PF00593 TonB dependent receptor RG48_RS15825 PF00367 phosphotransferase system, EIIB RG48_RS15825 PF02378 Phosphotransferase system, EIIC RG48_RS15830 PF01026 TatD related DNase RG48_RS15835 PF09115 DNA polymerase III, delta subunit, C terminal RG48_RS15840 PF02223 Thymidylate kinase RG48_RS15845 PF02618 YceG-like family RG48_RS15850 PF01063 Amino-transferase class IV RG48_RS15855 PF02801 Beta-ketoacyl synthase, C-terminal domain RG48_RS15855 PF00109 Beta-ketoacyl synthase, N-terminal domain RG48_RS15860 PF00550 Phosphopantetheine attachment site RG48_RS15870 PF00698 Acyl transferase domain RG48_RS15875 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RG48_RS15875 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RG48_RS15880 PF02504 Fatty acid synthesis protein RG48_RS15885 PF01783 Ribosomal L32p protein family RG48_RS15890 PF02620 Large ribosomal RNA subunit accumulation protein YceD RG48_RS15895 PF02545 Maf-like protein RG48_RS15900 PF00849 RNA pseudouridylate synthase RG48_RS15900 PF01479 S4 domain RG48_RS15910 PF00575 S1 RNA binding domain RG48_RS15910 PF10150 Ribonuclease E/G family RG48_RS15910 PF12111 Polyribonucleotide phosphorylase C terminal RG48_RS15915 PF00669 Bacterial flagellin N-terminal helical region RG48_RS15920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RG48_RS15920 PF00460 Flagella basal body rod protein RG48_RS15925 PF10135 Rod binding protein RG48_RS15925 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RG48_RS15930 PF02119 Flagellar P-ring protein RG48_RS15935 PF02107 Flagellar L-ring protein RG48_RS15940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RG48_RS15940 PF00460 Flagella basal body rod protein RG48_RS15945 PF00460 Flagella basal body rod protein RG48_RS15945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RG48_RS15950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RG48_RS15950 PF00460 Flagella basal body rod protein RG48_RS15950 PF07559 Flagellar basal body protein FlaE RG48_RS15955 PF13861 FlgD Tudor-like domain RG48_RS15955 PF13860 FlgD Ig-like domain RG48_RS15955 PF03963 Flagellar hook capping protein - N-terminal region RG48_RS15960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RG48_RS15960 PF00460 Flagella basal body rod protein RG48_RS15965 PF00460 Flagella basal body rod protein RG48_RS15970 PF13144 Chaperone for flagella basal body P-ring formation RG48_RS15975 PF04316 Anti-sigma-28 factor, FlgM RG48_RS15980 PF05130 FlgN protein RG48_RS15985 PF03023 Lipid II flippase MurJ RG48_RS15990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RG48_RS15995 PF04337 Protein of unknown function, DUF480 RG48_RS16000 PF13302 Acetyltransferase (GNAT) domain RG48_RS16005 PF07690 Major Facilitator Superfamily RG48_RS16010 PF04399 Glutaredoxin 2, C terminal domain RG48_RS16010 PF13417 Glutathione S-transferase, N-terminal domain RG48_RS16015 PF07273 Protein of unknown function (DUF1439) RG48_RS16020 PF01979 Amidohydrolase family RG48_RS16025 PF06183 DinI-like family RG48_RS16030 PF13991 BssS protein family RG48_RS16035 PF01266 FAD dependent oxidoreductase RG48_RS16040 PF10968 Protein of unknown function (DUF2770) RG48_RS16050 PF01292 Prokaryotic cytochrome b561 RG48_RS16055 PF04264 YceI-like domain RG48_RS16060 PF12368 Rhodanase C-terminal RG48_RS16060 PF00581 Rhodanese-like domain RG48_RS16060 PF17773 UPF0176 acylphosphatase like domain RG48_RS16065 PF03279 Bacterial lipid A biosynthesis acyltransferase RG48_RS16070 PF07690 Major Facilitator Superfamily RG48_RS16080 PF13984 MsyB protein RG48_RS16085 PF07119 Protein of unknown function (DUF1375) RG48_RS16090 PF00535 Glycosyl transferase family 2 RG48_RS16095 PF04349 Periplasmic glucan biosynthesis protein, MdoG RG48_RS16100 PF01757 Acyltransferase family RG48_RS16105 PF13091 PLD-like domain RG48_RS16110 PF01661 Macro domain RG48_RS16120 PF10610 Thin aggregative fimbriae synthesis protein RG48_RS16125 PF07012 Curlin associated repeat RG48_RS16130 PF07012 Curlin associated repeat RG48_RS16145 PF00196 Bacterial regulatory proteins, luxR family RG48_RS16150 PF10627 Curli assembly protein CsgE RG48_RS16155 PF10614 Type VIII secretion system (T8SS), CsgF protein RG48_RS16160 PF03783 Curli production assembly/transport component CsgG RG48_RS16165 PF06496 Protein of unknown function (DUF1097) RG48_RS16170 PF02613 Nitrate reductase delta subunit RG48_RS16175 PF02811 PHP domain RG48_RS16180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RG48_RS16200 PF01527 Transposase RG48_RS16205 PF13276 HTH-like domain RG48_RS16205 PF00665 Integrase core domain RG48_RS16205 PF13333 Integrase core domain RG48_RS16210 PF17158 Membrane-associated sensor, integral membrane domain RG48_RS16210 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS16220 PF14883 Hypothetical glycosyl hydrolase family 13 RG48_RS16220 PF01522 Polysaccharide deacetylase RG48_RS16225 PF00535 Glycosyl transferase family 2 RG48_RS16230 PF13994 PgaD-like protein RG48_RS16235 PF02562 PhoH-like protein RG48_RS16245 PF04261 Dyp-type peroxidase family RG48_RS16250 PF13473 Cupredoxin-like domain RG48_RS16250 PF09375 Imelysin RG48_RS16255 PF03239 Iron permease FTR1 family RG48_RS16265 PF00474 Sodium:solute symporter family RG48_RS16280 PF00171 Aldehyde dehydrogenase family RG48_RS16280 PF01619 Proline dehydrogenase RG48_RS16280 PF14850 DNA-binding domain of Proline dehydrogenase RG48_RS16280 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RG48_RS16285 PF00440 Bacterial regulatory proteins, tetR family RG48_RS16285 PF08362 YcdC-like protein, C-terminal region RG48_RS16290 PF00296 Luciferase-like monooxygenase RG48_RS16295 PF00857 Isochorismatase family RG48_RS16300 PF01042 Endoribonuclease L-PSP RG48_RS16305 PF12697 Alpha/beta hydrolase family RG48_RS16310 PF00881 Nitroreductase family RG48_RS16315 PF01613 Flavin reductase like domain RG48_RS16320 PF00860 Permease family RG48_RS16330 PF10685 Stress-induced bacterial acidophilic repeat motif RG48_RS16340 PF03358 NADPH-dependent FMN reductase RG48_RS16345 PF13993 YccJ-like protein RG48_RS16350 PF00328 Histidine phosphatase superfamily (branch 2) RG48_RS16360 PF00226 DnaJ domain RG48_RS16360 PF01556 DnaJ C terminal domain RG48_RS16370 PF02613 Nitrate reductase delta subunit RG48_RS16375 PF01568 Molydopterin dinucleotide binding domain RG48_RS16375 PF00384 Molybdopterin oxidoreductase RG48_RS16375 PF18364 Molybdopterin oxidoreductase N-terminal domain RG48_RS16380 PF03264 NapC/NirT cytochrome c family, N-terminal region RG48_RS16385 PF00072 Response regulator receiver domain RG48_RS16385 PF00486 Transcriptional regulatory protein, C terminal RG48_RS16390 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RG48_RS16395 PF00072 Response regulator receiver domain RG48_RS16395 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS16395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS16395 PF00672 HAMP domain RG48_RS16395 PF01627 Hpt domain RG48_RS16400 PF12801 4Fe-4S binding domain RG48_RS16405 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system RG48_RS16410 PF15939 Putative antitoxin of bacterial toxin-antitoxin system RG48_RS16420 PF00313 'Cold-shock' DNA-binding domain RG48_RS16425 PF00313 'Cold-shock' DNA-binding domain RG48_RS16435 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF RG48_RS16440 PF06251 Capsule biosynthesis GfcC RG48_RS16445 PF06082 Exopolysaccharide biosynthesis protein YbjH RG48_RS16450 PF18412 Outer-membrane lipoprotein Wza C-terminal domain RG48_RS16450 PF02563 Polysaccharide biosynthesis/export protein RG48_RS16450 PF10531 SLBB domain RG48_RS16455 PF01451 Low molecular weight phosphotyrosine protein phosphatase RG48_RS16460 PF13807 G-rich domain on putative tyrosine kinase RG48_RS16460 PF02706 Chain length determinant protein RG48_RS16460 PF13614 AAA domain RG48_RS16465 PF13807 G-rich domain on putative tyrosine kinase RG48_RS16465 PF02706 Chain length determinant protein RG48_RS16465 PF13614 AAA domain RG48_RS16470 PF00328 Histidine phosphatase superfamily (branch 2) RG48_RS16475 PF08173 Membrane bound YbgT-like protein RG48_RS16480 PF02322 Cytochrome bd terminal oxidase subunit II RG48_RS16485 PF01654 Cytochrome bd terminal oxidase subunit I RG48_RS16490 PF04809 HupH hydrogenase expression protein, C-terminal conserved region RG48_RS16495 PF07449 Hydrogenase-1 expression protein HyaE RG48_RS16500 PF01750 Hydrogenase maturation protease RG48_RS16505 PF01292 Prokaryotic cytochrome b561 RG48_RS16510 PF00374 Nickel-dependent hydrogenase RG48_RS16515 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RG48_RS16515 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RG48_RS16525 PF01027 Inhibitor of apoptosis-promoting Bax1 RG48_RS16530 PF04358 DsrC like protein RG48_RS16535 PF00708 Acylphosphatase RG48_RS16540 PF17785 PUA-like domain RG48_RS16540 PF10672 S-adenosylmethionine-dependent methyltransferase RG48_RS16545 PF08755 Hemimethylated DNA-binding protein YccV like RG48_RS16550 PF13380 CoA binding domain RG48_RS16560 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) RG48_RS16565 PF02142 MGS-like domain RG48_RS16570 PF00580 UvrD/REP helicase N-terminal domain RG48_RS16570 PF12462 DNA helicase IV / RNA helicase N terminal RG48_RS16570 PF13361 UvrD-like helicase C-terminal domain RG48_RS16575 PF03733 Inner membrane component domain RG48_RS16580 PF12805 FUSC-like inner membrane protein yccS RG48_RS16585 PF04994 TfoX C-terminal domain RG48_RS16585 PF04993 TfoX N-terminal domain RG48_RS16590 PF03846 Cell division inhibitor SulA RG48_RS16600 PF00691 OmpA family RG48_RS16600 PF01389 OmpA-like transmembrane domain RG48_RS16605 PF17414 MatP C-terminal ribbon-helix-helix domain RG48_RS16605 PF06303 MatP N-terminal domain RG48_RS16610 PF05362 Lon protease (S16) C-terminal proteolytic domain RG48_RS16610 PF13654 AAA domain RG48_RS16615 PF07977 FabA-like domain RG48_RS16620 PF04957 Ribosome modulation factor RG48_RS16625 PF03886 ABC-type transport auxiliary lipoprotein component RG48_RS16630 PF02470 MlaD protein RG48_RS16635 PF04403 Paraquat-inducible protein A RG48_RS16640 PF12848 ABC transporter RG48_RS16640 PF16326 ABC transporter C-terminal domain RG48_RS16640 PF00005 ABC transporter RG48_RS16645 PF02926 THUMP domain RG48_RS16645 PF10672 S-adenosylmethionine-dependent methyltransferase RG48_RS16645 PF01170 Putative RNA methylase family UPF0020 RG48_RS16650 PF03473 MOSC domain RG48_RS16650 PF03476 MOSC N-terminal beta barrel domain RG48_RS16650 PF00111 2Fe-2S iron-sulfur cluster binding domain RG48_RS16655 PF07126 Cell-division protein ZapC RG48_RS16660 PF01180 Dihydroorotate dehydrogenase RG48_RS16665 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS16665 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS16670 PF00419 Fimbrial protein RG48_RS16675 PF00419 Fimbrial protein RG48_RS16680 PF00419 Fimbrial protein RG48_RS16685 PF00577 Outer membrane usher protein RG48_RS16685 PF13954 PapC N-terminal domain RG48_RS16685 PF13953 PapC C-terminal domain RG48_RS16690 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS16690 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS16695 PF00419 Fimbrial protein RG48_RS16705 PF03358 NADPH-dependent FMN reductase RG48_RS16710 PF09084 NMT1/THI5 like RG48_RS16715 PF00296 Luciferase-like monooxygenase RG48_RS16720 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS16725 PF00005 ABC transporter RG48_RS16730 PF01433 Peptidase family M1 domain RG48_RS16730 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RG48_RS16730 PF11940 Domain of unknown function (DUF3458) Ig-like fold RG48_RS16735 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RG48_RS16735 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RG48_RS16740 PF01336 OB-fold nucleic acid binding domain RG48_RS16740 PF00152 tRNA synthetases class II (D, K and N) RG48_RS16745 PF00267 Gram-negative porin RG48_RS16755 PF00155 Aminotransferase class I and II RG48_RS16760 PF00753 Metallo-beta-lactamase superfamily RG48_RS16765 PF05951 Bacterial protein of unknown function (DUF882) RG48_RS16775 PF03734 L,D-transpeptidase catalytic domain RG48_RS16775 PF01471 Putative peptidoglycan binding domain RG48_RS16780 PF16330 MukB hinge domain RG48_RS16780 PF04310 MukB N-terminal RG48_RS16785 PF04288 MukE-like family RG48_RS16790 PF17192 MukF middle domain RG48_RS16790 PF17193 MukF C-terminal domain RG48_RS16790 PF03882 MukF winged-helix domain RG48_RS16795 PF13847 Methyltransferase domain RG48_RS16800 PF02698 DUF218 domain RG48_RS16805 PF01636 Phosphotransferase enzyme family RG48_RS16810 PF02348 Cytidylyltransferase RG48_RS16815 PF03966 Trm112p-like protein RG48_RS16820 PF06224 Winged helix DNA-binding domain RG48_RS16825 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RG48_RS16830 PF00005 ABC transporter RG48_RS16830 PF00664 ABC transporter transmembrane region RG48_RS16835 PF03772 Competence protein RG48_RS16835 PF00753 Metallo-beta-lactamase superfamily RG48_RS16840 PF00216 Bacterial DNA-binding protein RG48_RS16845 PF00575 S1 RNA binding domain RG48_RS16850 PF02224 Cytidylate kinase RG48_RS16855 PF01435 Peptidase family M48 RG48_RS16860 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RG48_RS16865 PF00266 Aminotransferase class-V RG48_RS16870 PF04239 Protein of unknown function (DUF421) RG48_RS16875 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding RG48_RS16875 PF18381 YcaO cyclodehydratase C-terminal domain RG48_RS16880 PF01226 Formate/nitrite transporter RG48_RS16885 PF02901 Pyruvate formate lyase-like RG48_RS16885 PF01228 Glycine radical RG48_RS16890 PF04606 Ogr/Delta-like zinc finger RG48_RS16910 PF02899 Phage integrase, N-terminal SAM-like domain RG48_RS16910 PF00589 Phage integrase family RG48_RS16915 PF04055 Radical SAM superfamily RG48_RS16920 PF02525 Flavodoxin-like fold RG48_RS16925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS16925 PF03466 LysR substrate binding domain RG48_RS16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS16930 PF03466 LysR substrate binding domain RG48_RS16935 PF13520 Amino acid permease RG48_RS16940 PF07690 Major Facilitator Superfamily RG48_RS16945 PF00857 Isochorismatase family RG48_RS16950 PF04976 DMSO reductase anchor subunit (DmsC) RG48_RS16955 PF12800 4Fe-4S binding domain RG48_RS16955 PF13247 4Fe-4S dicluster domain RG48_RS16960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RG48_RS16960 PF01568 Molydopterin dinucleotide binding domain RG48_RS16960 PF00384 Molybdopterin oxidoreductase RG48_RS16965 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RG48_RS16965 PF02403 Seryl-tRNA synthetase N-terminal domain RG48_RS16970 PF12002 MgsA AAA+ ATPase C terminal RG48_RS16970 PF16193 AAA C-terminal domain RG48_RS16970 PF00004 ATPase family associated with various cellular activities (AAA) RG48_RS16975 PF03548 Outer membrane lipoprotein carrier protein LolA RG48_RS16980 PF01580 FtsK/SpoIIIE family RG48_RS16980 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RG48_RS16980 PF17854 FtsK alpha domain RG48_RS16980 PF09397 Ftsk gamma domain RG48_RS16985 PF01037 Lrp/AsnC ligand binding domain RG48_RS16995 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS17000 PF00664 ABC transporter transmembrane region RG48_RS17000 PF00005 ABC transporter RG48_RS17005 PF00005 ABC transporter RG48_RS17005 PF00664 ABC transporter transmembrane region RG48_RS17010 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RG48_RS17020 PF01176 Translation initiation factor 1A / IF-1 RG48_RS17030 PF10431 C-terminal, D2-small domain, of ClpB protein RG48_RS17030 PF02861 Clp amino terminal domain, pathogenicity island component RG48_RS17030 PF17871 AAA lid domain RG48_RS17030 PF07724 AAA domain (Cdc48 subfamily) RG48_RS17030 PF00004 ATPase family associated with various cellular activities (AAA) RG48_RS17035 PF02617 ATP-dependent Clp protease adaptor protein ClpS RG48_RS17040 PF00313 'Cold-shock' DNA-binding domain RG48_RS17045 PF02687 FtsX-like permease family RG48_RS17045 PF00005 ABC transporter RG48_RS17045 PF12704 MacB-like periplasmic core domain RG48_RS17050 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS17055 PF04393 Protein of unknown function (DUF535) RG48_RS17060 PF11398 Protein of unknown function (DUF2813) RG48_RS17070 PF00230 Major intrinsic protein RG48_RS17080 PF03956 Lysine exporter LysO RG48_RS17085 PF03063 Prismane/CO dehydrogenase family RG48_RS17090 PF00111 2Fe-2S iron-sulfur cluster binding domain RG48_RS17090 PF00970 Oxidoreductase FAD-binding domain RG48_RS17090 PF00175 Oxidoreductase NAD-binding domain RG48_RS17095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RG48_RS17095 PF00205 Thiamine pyrophosphate enzyme, central domain RG48_RS17095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RG48_RS17100 PF01212 Beta-eliminating lyase RG48_RS17105 PF13460 NAD(P)H-binding RG48_RS17105 PF11066 Protein of unknown function (DUF2867) RG48_RS17110 PF01370 NAD dependent epimerase/dehydratase family RG48_RS17115 PF01510 N-acetylmuramoyl-L-alanine amidase RG48_RS17120 PF01906 Putative heavy-metal-binding RG48_RS17125 PF12883 Protein of unknown function (DUF3828) RG48_RS17130 PF00005 ABC transporter RG48_RS17135 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS17140 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS17145 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS17150 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS17160 PF05958 tRNA (Uracil-5-)-methyltransferase RG48_RS17165 PF10767 Protein of unknown function (DUF2593) RG48_RS17170 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS17175 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS17180 PF00005 ABC transporter RG48_RS17180 PF08402 TOBE domain RG48_RS17185 PF13416 Bacterial extracellular solute-binding protein RG48_RS17195 PF10722 Putative bacterial sensory transduction regulator RG48_RS17200 PF18030 RimK PreATP-grasp domain RG48_RS17200 PF08443 RimK-like ATP-grasp domain RG48_RS17205 PF00881 Nitroreductase family RG48_RS17210 PF07214 Protein of unknown function (DUF1418) RG48_RS17215 PF00462 Glutaredoxin RG48_RS17220 PF11045 Putative inner membrane protein of Enterobacteriaceae RG48_RS17225 PF06826 Predicted Permease Membrane Region RG48_RS17225 PF02080 TrkA-C domain RG48_RS17230 PF04606 Ogr/Delta-like zinc finger RG48_RS17280 PF06183 DinI-like family RG48_RS17290 PF05840 Bacteriophage replication gene A protein (GPA) RG48_RS17295 PF02086 D12 class N6 adenine-specific DNA methyltransferase RG48_RS17300 PF01258 Prokaryotic dksA/traR C4-type zinc finger RG48_RS17310 PF17282 Family of unknown function (DUF5347) RG48_RS17320 PF06892 Phage regulatory protein CII (CP76) RG48_RS17330 PF16452 Bacteriophage CI repressor C-terminal domain RG48_RS17330 PF07022 Bacteriophage CI repressor helix-turn-helix domain RG48_RS17340 PF00589 Phage integrase family RG48_RS17340 PF02899 Phage integrase, N-terminal SAM-like domain RG48_RS17345 PF00440 Bacterial regulatory proteins, tetR family RG48_RS17350 PF07690 Major Facilitator Superfamily RG48_RS17365 PF07690 Major Facilitator Superfamily RG48_RS17370 PF01569 PAP2 superfamily RG48_RS17375 PF08220 DeoR-like helix-turn-helix domain RG48_RS17375 PF00455 DeoR C terminal sensor domain RG48_RS17380 PF07943 Penicillin-binding protein 5, C-terminal domain RG48_RS17380 PF00768 D-alanyl-D-alanine carboxypeptidase RG48_RS17385 PF13417 Glutathione S-transferase, N-terminal domain RG48_RS17385 PF00043 Glutathione S-transferase, C-terminal domain RG48_RS17390 PF07995 Glucose / Sorbosone dehydrogenase RG48_RS17395 PF10799 Biofilm formation protein (YliH/bssR) RG48_RS17400 PF04055 Radical SAM superfamily RG48_RS17400 PF18693 TRAM domain RG48_RS17400 PF00919 Uncharacterized protein family UPF0004 RG48_RS17405 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS17405 PF17156 Gammaproteobacterial periplasmic sensor domain RG48_RS17410 PF00563 EAL domain RG48_RS17410 PF17153 Periplasmic sensor domain, extracellular RG48_RS17415 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS17415 PF12911 N-terminal TM domain of oligopeptide transport permease C RG48_RS17420 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS17425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS17430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RG48_RS17430 PF00005 ABC transporter RG48_RS17435 PF01112 Asparaginase RG48_RS17440 PF00994 Probable molybdopterin binding domain RG48_RS17440 PF03454 MoeA C-terminal region (domain IV) RG48_RS17440 PF03453 MoeA N-terminal region (domain I and II) RG48_RS17445 PF00899 ThiF family RG48_RS17450 PF00923 Transaldolase/Fructose-6-phosphate aldolase RG48_RS17455 PF04055 Radical SAM superfamily RG48_RS17460 PF02901 Pyruvate formate lyase-like RG48_RS17460 PF01228 Glycine radical RG48_RS17470 PF07350 Protein of unknown function (DUF1479) RG48_RS17475 PF00005 ABC transporter RG48_RS17475 PF12848 ABC transporter RG48_RS17480 PF03734 L,D-transpeptidase catalytic domain RG48_RS17480 PF17969 L,D-transpeptidase C-terminal domain RG48_RS17485 PF03600 Citrate transporter RG48_RS17490 PF01325 Iron dependent repressor, N-terminal DNA binding domain RG48_RS17490 PF02742 Iron dependent repressor, metal binding and dimerisation domain RG48_RS17500 PF00884 Sulfatase RG48_RS17505 PF13505 Outer membrane protein beta-barrel domain RG48_RS17510 PF00892 EamA-like transporter family RG48_RS17520 PF00210 Ferritin-like domain RG48_RS17535 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS17540 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS17545 PF00005 ABC transporter RG48_RS17555 PF00924 Mechanosensitive ion channel RG48_RS17560 PF05971 RNA methyltransferase RG48_RS17565 PF07338 Protein of unknown function (DUF1471) RG48_RS17570 PF00593 TonB dependent receptor RG48_RS17570 PF07715 TonB-dependent Receptor Plug Domain RG48_RS17575 PF18331 PKHD-type hydroxylase C-terminal domain RG48_RS17575 PF13640 2OG-Fe(II) oxygenase superfamily RG48_RS17580 PF01258 Prokaryotic dksA/traR C4-type zinc finger RG48_RS17585 PF07338 Protein of unknown function (DUF1471) RG48_RS17590 PF01548 Transposase RG48_RS17590 PF02371 Transposase IS116/IS110/IS902 family RG48_RS17600 PF02615 Malate/L-lactate dehydrogenase RG48_RS17605 PF02885 Glycosyl transferase family, helical bundle domain RG48_RS17610 PF00270 DEAD/DEAH box helicase RG48_RS17610 PF13307 Helicase C-terminal domain RG48_RS17610 PF06733 DEAD_2 RG48_RS17620 PF08719 Domain of unknown function (DUF1768) RG48_RS17625 PF00270 DEAD/DEAH box helicase RG48_RS17625 PF00271 Helicase conserved C-terminal domain RG48_RS17630 PF00440 Bacterial regulatory proteins, tetR family RG48_RS17630 PF09209 Tetracyclin repressor-like, C-terminal domain RG48_RS17635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS17640 PF00005 ABC transporter RG48_RS17655 PF11076 Putative inner membrane protein YbhQ RG48_RS17660 PF03372 Endonuclease/Exonuclease/phosphatase family RG48_RS17665 PF13091 PLD-like domain RG48_RS17670 PF03706 Lysylphosphatidylglycerol synthase TM region RG48_RS17675 PF01027 Inhibitor of apoptosis-promoting Bax1 RG48_RS17680 PF01027 Inhibitor of apoptosis-promoting Bax1 RG48_RS17685 PF02391 MoaE protein RG48_RS17690 PF02597 ThiS family RG48_RS17695 PF01967 MoaC family RG48_RS17700 PF00994 Probable molybdopterin binding domain RG48_RS17705 PF04055 Radical SAM superfamily RG48_RS17705 PF06463 Molybdenum Cofactor Synthesis C RG48_RS17710 PF01933 Uncharacterised protein family UPF0052 RG48_RS17715 PF04851 Type III restriction enzyme, res subunit RG48_RS17715 PF02151 UvrB/uvrC motif RG48_RS17715 PF00271 Helicase conserved C-terminal domain RG48_RS17715 PF17757 UvrB interaction domain RG48_RS17715 PF12344 Ultra-violet resistance protein B RG48_RS17725 PF08241 Methyltransferase domain RG48_RS17730 PF00155 Aminotransferase class I and II RG48_RS17735 PF06968 Biotin and Thiamin Synthesis associated domain RG48_RS17735 PF04055 Radical SAM superfamily RG48_RS17740 PF00202 Aminotransferase class-III RG48_RS17745 PF01161 Phosphatidylethanolamine-binding protein RG48_RS17755 PF17158 Membrane-associated sensor, integral membrane domain RG48_RS17755 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS17760 PF02413 Caudovirales tail fibre assembly protein, lambda gpK RG48_RS17765 PF03335 Phage tail fibre repeat RG48_RS17765 PF07484 Phage Tail Collar Domain RG48_RS17770 PF13132 Domain of unknown function (DUF3950) RG48_RS17775 PF07166 Protein of unknown function (DUF1398) RG48_RS17790 PF03245 Bacteriophage Rz lysis protein RG48_RS17795 PF00959 Phage lysozyme RG48_RS17800 PF04971 Bacteriophage P21 holin S RG48_RS17805 PF12833 Helix-turn-helix domain RG48_RS17815 PF08349 Protein of unknown function (DUF1722) RG48_RS17820 PF08212 Lipocalin-like domain RG48_RS17825 PF06530 Phage antitermination protein Q RG48_RS17835 PF05866 Endodeoxyribonuclease RusA RG48_RS17845 PF01381 Helix-turn-helix RG48_RS17845 PF00717 Peptidase S24-like RG48_RS17850 PF00717 Peptidase S24-like RG48_RS17850 PF01381 Helix-turn-helix RG48_RS17870 PF10800 Protein of unknown function (DUF2528) RG48_RS17940 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain RG48_RS17940 PF00589 Phage integrase family RG48_RS17945 PF01095 Pectinesterase RG48_RS17950 PF00330 Aconitase family (aconitate hydratase) RG48_RS17950 PF00694 Aconitase C-terminal domain RG48_RS17955 PF00939 Sodium:sulfate symporter transmembrane region RG48_RS17960 PF04303 PrpF protein RG48_RS17965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS17965 PF03466 LysR substrate binding domain RG48_RS17970 PF10282 Lactonase, 7-bladed beta-propeller RG48_RS17980 PF00005 ABC transporter RG48_RS17980 PF03459 TOBE domain RG48_RS17985 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS18000 PF10766 Multidrug efflux pump-associated protein AcrZ RG48_RS18005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS18005 PF03459 TOBE domain RG48_RS18010 PF00005 ABC transporter RG48_RS18015 PF16363 GDP-mannose 4,6 dehydratase RG48_RS18020 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RG48_RS18020 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RG48_RS18025 PF10509 Galactokinase galactose-binding signature RG48_RS18025 PF08544 GHMP kinases C terminal RG48_RS18025 PF00288 GHMP kinases N terminal domain RG48_RS18030 PF01263 Aldose 1-epimerase RG48_RS18035 PF00300 Histidine phosphatase superfamily (branch 1) RG48_RS18040 PF00793 DAHP synthetase I family RG48_RS18050 PF13985 YbgS-like protein RG48_RS18055 PF01545 Cation efflux family RG48_RS18060 PF04973 Nicotinamide mononucleotide transporter RG48_RS18065 PF02445 Quinolinate synthetase A protein RG48_RS18105 PF16331 TolA binding protein trimerisation RG48_RS18105 PF13174 Tetratricopeptide repeat RG48_RS18110 PF00691 OmpA family RG48_RS18115 PF07676 WD40-like Beta Propeller Repeat RG48_RS18115 PF04052 TolB amino-terminal domain RG48_RS18120 PF06519 TolA C-terminal RG48_RS18125 PF02472 Biopolymer transport protein ExbD/TolR RG48_RS18130 PF01618 MotA/TolQ/ExbB proton channel family RG48_RS18135 PF03061 Thioesterase superfamily RG48_RS18140 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) RG48_RS18145 PF08173 Membrane bound YbgT-like protein RG48_RS18150 PF02322 Cytochrome bd terminal oxidase subunit II RG48_RS18155 PF01654 Cytochrome bd terminal oxidase subunit I RG48_RS18165 PF07748 Glycosyl hydrolases family 38 C-terminal domain RG48_RS18165 PF01074 Glycosyl hydrolases family 38 N-terminal domain RG48_RS18165 PF09261 Alpha mannosidase middle domain RG48_RS18170 PF02378 Phosphotransferase system, EIIC RG48_RS18170 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS18170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS18175 PF07702 UTRA domain RG48_RS18175 PF00392 Bacterial regulatory proteins, gntR family RG48_RS18180 PF00549 CoA-ligase RG48_RS18180 PF02629 CoA binding domain RG48_RS18185 PF08442 ATP-grasp domain RG48_RS18185 PF00549 CoA-ligase RG48_RS18190 PF02817 e3 binding domain RG48_RS18190 PF00364 Biotin-requiring enzyme RG48_RS18190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RG48_RS18195 PF00676 Dehydrogenase E1 component RG48_RS18195 PF16870 2-oxoglutarate dehydrogenase C-terminal RG48_RS18195 PF02779 Transketolase, pyrimidine binding domain RG48_RS18195 PF16078 2-oxoglutarate dehydrogenase N-terminus RG48_RS18205 PF13085 2Fe-2S iron-sulfur cluster binding domain RG48_RS18210 PF00890 FAD binding domain RG48_RS18210 PF02910 Fumarate reductase flavoprotein C-term RG48_RS18215 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RG48_RS18220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RG48_RS18240 PF00285 Citrate synthase, C-terminal domain RG48_RS18245 PF00419 Fimbrial protein RG48_RS18250 PF00577 Outer membrane usher protein RG48_RS18250 PF13954 PapC N-terminal domain RG48_RS18250 PF13953 PapC C-terminal domain RG48_RS18255 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS18255 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS18260 PF00419 Fimbrial protein RG48_RS18265 PF05145 Transition state regulatory protein AbrB RG48_RS18270 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RG48_RS18270 PF06827 Zinc finger found in FPG and IleRS RG48_RS18270 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RG48_RS18275 PF03746 LamB/YcsF family RG48_RS18280 PF02626 Carboxyltransferase domain, subdomain A and B RG48_RS18285 PF02682 Carboxyltransferase domain, subdomain C and D RG48_RS18290 PF01784 NIF3 (NGG1p interacting factor 3) RG48_RS18295 PF00854 POT family RG48_RS18300 PF00875 DNA photolyase RG48_RS18300 PF03441 FAD binding domain of DNA photolyase RG48_RS18305 PF08349 Protein of unknown function (DUF1722) RG48_RS18310 PF01609 Transposase DDE domain RG48_RS18310 PF13808 DDE_Tnp_1-associated RG48_RS18315 PF13808 DDE_Tnp_1-associated RG48_RS18325 PF03527 RHS protein RG48_RS18325 PF05593 RHS Repeat RG48_RS18335 PF05593 RHS Repeat RG48_RS18335 PF03527 RHS protein RG48_RS18340 PF05593 RHS Repeat RG48_RS18340 PF03527 RHS protein RG48_RS18340 PF15606 Bacterial toxin 34 RG48_RS18350 PF13333 Integrase core domain RG48_RS18350 PF13276 HTH-like domain RG48_RS18350 PF00665 Integrase core domain RG48_RS18355 PF05593 RHS Repeat RG48_RS18355 PF03527 RHS protein RG48_RS18355 PF15606 Bacterial toxin 34 RG48_RS18360 PF10725 Protein of unknown function (DUF2517) RG48_RS18365 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) RG48_RS18370 PF03814 Potassium-transporting ATPase A subunit RG48_RS18380 PF02669 K+-transporting ATPase, c chain RG48_RS18385 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS18385 PF13492 GAF domain RG48_RS18385 PF02702 Osmosensitive K+ channel His kinase sensor domain RG48_RS18385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS18385 PF13493 Domain of unknown function (DUF4118) RG48_RS18390 PF00486 Transcriptional regulatory protein, C terminal RG48_RS18390 PF00072 Response regulator receiver domain RG48_RS18405 PF01276 Orn/Lys/Arg decarboxylase, major domain RG48_RS18405 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RG48_RS18405 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RG48_RS18410 PF13520 Amino acid permease RG48_RS18420 PF10946 Protein of unknown function DUF2625 RG48_RS18430 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RG48_RS18430 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RG48_RS18430 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RG48_RS18430 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RG48_RS18435 PF17206 SeqA protein N-terminal domain RG48_RS18435 PF03925 SeqA protein C-terminal domain RG48_RS18440 PF12697 Alpha/beta hydrolase family RG48_RS18445 PF01402 Ribbon-helix-helix protein, copG family RG48_RS18450 PF00258 Flavodoxin RG48_RS18465 PF01475 Ferric uptake regulator family RG48_RS18470 PF13982 YbfN-like lipoprotein RG48_RS18475 PF03573 outer membrane porin, OprD family RG48_RS18480 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RG48_RS18480 PF00749 tRNA synthetases class I (E and Q), catalytic domain RG48_RS18485 PF00367 phosphotransferase system, EIIB RG48_RS18485 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RG48_RS18485 PF02378 Phosphotransferase system, EIIC RG48_RS18490 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RG48_RS18495 PF01979 Amidohydrolase family RG48_RS18500 PF00480 ROK family RG48_RS18500 PF01047 MarR family RG48_RS18505 PF13344 Haloacid dehalogenase-like hydrolase RG48_RS18510 PF00733 Asparagine synthase RG48_RS18510 PF13537 Glutamine amidotransferase domain RG48_RS18560 PF01494 FAD binding domain RG48_RS18565 PF00919 Uncharacterized protein family UPF0004 RG48_RS18565 PF04055 Radical SAM superfamily RG48_RS18565 PF01938 TRAM domain RG48_RS18570 PF02562 PhoH-like protein RG48_RS18575 PF02130 Uncharacterized protein family UPF0054 RG48_RS18580 PF00571 CBS domain RG48_RS18580 PF03471 Transporter associated domain RG48_RS18585 PF00795 Carbon-nitrogen hydrolase RG48_RS18595 PF01694 Rhomboid family RG48_RS18600 PF00497 Bacterial extracellular solute-binding proteins, family 3 RG48_RS18605 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS18610 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS18615 PF00005 ABC transporter RG48_RS18620 PF01156 Inosine-uridine preferring nucleoside hydrolase RG48_RS18625 PF00012 Hsp70 protein RG48_RS18640 PF06889 Protein of unknown function (DUF1266) RG48_RS18645 PF08238 Sel1 repeat RG48_RS18655 PF06889 Protein of unknown function (DUF1266) RG48_RS18660 PF08238 Sel1 repeat RG48_RS18665 PF07295 Zinc-ribbon containing domain RG48_RS18670 PF08264 Anticodon-binding domain of tRNA RG48_RS18670 PF00133 tRNA synthetases class I (I, L, M and V) RG48_RS18670 PF13603 Leucyl-tRNA synthetase, Domain 2 RG48_RS18675 PF04390 Lipopolysaccharide-assembly RG48_RS18680 PF14840 Processivity clamp loader gamma complex DNA pol III C-term RG48_RS18680 PF06144 DNA polymerase III, delta subunit RG48_RS18685 PF01467 Cytidylyltransferase-like RG48_RS18690 PF00300 Histidine phosphatase superfamily (branch 1) RG48_RS18700 PF02590 Predicted SPOUT methyltransferase RG48_RS18705 PF03717 Penicillin-binding Protein dimerisation domain RG48_RS18705 PF00905 Penicillin binding protein transpeptidase domain RG48_RS18710 PF01098 Cell cycle protein RG48_RS18715 PF03330 Lytic transglycolase RG48_RS18715 PF05036 Sporulation related domain RG48_RS18720 PF07943 Penicillin-binding protein 5, C-terminal domain RG48_RS18720 PF00768 D-alanyl-D-alanine carboxypeptidase RG48_RS18725 PF04359 Protein of unknown function (DUF493) RG48_RS18730 PF03099 Biotin/lipoate A/B protein ligase family RG48_RS18740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS18740 PF03466 LysR substrate binding domain RG48_RS18750 PF04055 Radical SAM superfamily RG48_RS18750 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RG48_RS18755 PF02416 mttA/Hcf106 family RG48_RS18760 PF00795 Carbon-nitrogen hydrolase RG48_RS18765 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RG48_RS18770 PF00313 'Cold-shock' DNA-binding domain RG48_RS18775 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP RG48_RS18785 PF03606 C4-dicarboxylate anaerobic carrier RG48_RS18790 PF00072 Response regulator receiver domain RG48_RS18790 PF12431 Transcriptional regulator RG48_RS18795 PF17203 Single cache domain 3 RG48_RS18795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS18795 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RG48_RS18795 PF00989 PAS fold RG48_RS18800 PF08218 Citrate lyase ligase C-terminal domain RG48_RS18805 PF06857 Malonate decarboxylase delta subunit (MdcD) RG48_RS18810 PF03328 HpcH/HpaI aldolase/citrate lyase family RG48_RS18815 PF04223 Citrate lyase, alpha subunit (CitF) RG48_RS18820 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase RG48_RS18825 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase RG48_RS18830 PF00939 Sodium:sulfate symporter transmembrane region RG48_RS18835 PF00445 Ribonuclease T2 family RG48_RS18845 PF14760 Rnk N-terminus RG48_RS18845 PF01272 Transcription elongation factor, GreA/GreB, C-term RG48_RS18855 PF00107 Zinc-binding dehydrogenase RG48_RS18855 PF13823 Alcohol dehydrogenase GroES-associated RG48_RS18855 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS18860 PF00582 Universal stress protein family RG48_RS18865 PF13192 Thioredoxin domain RG48_RS18865 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS18870 PF00578 AhpC/TSA family RG48_RS18870 PF10417 C-terminal domain of 1-Cys peroxiredoxin RG48_RS18875 PF13098 Thioredoxin-like domain RG48_RS18885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS18885 PF03466 LysR substrate binding domain RG48_RS18890 PF11922 Domain of unknown function (DUF3440) RG48_RS18890 PF01507 Phosphoadenosine phosphosulfate reductase family RG48_RS18895 PF02195 ParB-like nuclease domain RG48_RS18900 PF00155 Aminotransferase class I and II RG48_RS18905 PF00465 Iron-containing alcohol dehydrogenase RG48_RS18910 PF04328 Selenoprotein, putative RG48_RS18915 PF13722 5TM C-terminal transporter carbon starvation CstA RG48_RS18915 PF02554 Carbon starvation protein CstA RG48_RS18920 PF03061 Thioesterase superfamily RG48_RS18930 PF00857 Isochorismatase family RG48_RS18930 PF00550 Phosphopantetheine attachment site RG48_RS18935 PF13193 AMP-binding enzyme C-terminal domain RG48_RS18935 PF00501 AMP-binding enzyme RG48_RS18940 PF00425 chorismate binding enzyme RG48_RS18950 PF01497 Periplasmic binding protein RG48_RS18955 PF05977 Transmembrane secretion effector RG48_RS18960 PF01032 FecCD transport family RG48_RS18965 PF01032 FecCD transport family RG48_RS18970 PF00005 ABC transporter RG48_RS18975 PF02706 Chain length determinant protein RG48_RS18980 PF00975 Thioesterase domain RG48_RS18980 PF00550 Phosphopantetheine attachment site RG48_RS18980 PF00668 Condensation domain RG48_RS18980 PF00501 AMP-binding enzyme RG48_RS18980 PF13193 AMP-binding enzyme C-terminal domain RG48_RS18985 PF03621 MbtH-like protein RG48_RS18990 PF00756 Putative esterase RG48_RS18990 PF11806 Domain of unknown function (DUF3327) RG48_RS18995 PF00593 TonB dependent receptor RG48_RS18995 PF07715 TonB-dependent Receptor Plug Domain RG48_RS19005 PF01648 4'-phosphopantetheinyl transferase superfamily RG48_RS19005 PF17837 4'-phosphopantetheinyl transferase N-terminal domain RG48_RS19015 PF01609 Transposase DDE domain RG48_RS19020 PF01848 Hok/gef family RG48_RS19025 PF13333 Integrase core domain RG48_RS19025 PF13276 HTH-like domain RG48_RS19025 PF00665 Integrase core domain RG48_RS19040 PF04107 Glutamate-cysteine ligase family 2(GCS2) RG48_RS19045 PF06643 Protein of unknown function (DUF1158) RG48_RS19050 PF04237 YjbR RG48_RS19055 PF00881 Nitroreductase family RG48_RS19060 PF00924 Mechanosensitive ion channel RG48_RS19065 PF00324 Amino acid permease RG48_RS19070 PF00873 AcrB/AcrD/AcrF family RG48_RS19075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS19075 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS19080 PF11604 Copper binding periplasmic protein CusF RG48_RS19085 PF02321 Outer membrane efflux protein RG48_RS19095 PF00072 Response regulator receiver domain RG48_RS19095 PF00486 Transcriptional regulatory protein, C terminal RG48_RS19100 PF00672 HAMP domain RG48_RS19100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS19100 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS19110 PF04717 Type VI secretion system, phage-baseplate injector RG48_RS19120 PF05488 PAAR motif RG48_RS19120 PF05593 RHS Repeat RG48_RS19145 PF01609 Transposase DDE domain RG48_RS19145 PF13808 DDE_Tnp_1-associated RG48_RS19155 PF13283 Bacteriophage N adsorption protein A C-term RG48_RS19160 PF14488 Domain of unknown function (DUF4434) RG48_RS19170 PF12833 Helix-turn-helix domain RG48_RS19180 PF00196 Bacterial regulatory proteins, luxR family RG48_RS19180 PF00072 Response regulator receiver domain RG48_RS19185 PF00419 Fimbrial protein RG48_RS19190 PF00419 Fimbrial protein RG48_RS19195 PF13953 PapC C-terminal domain RG48_RS19195 PF13954 PapC N-terminal domain RG48_RS19195 PF00577 Outer membrane usher protein RG48_RS19200 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS19200 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS19205 PF00419 Fimbrial protein RG48_RS19210 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RG48_RS19210 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RG48_RS19220 PF04307 LexA-binding, inner membrane-associated putative hydrolase RG48_RS19225 PF01406 tRNA synthetases class I (C) catalytic domain RG48_RS19225 PF09190 DALR domain RG48_RS19230 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RG48_RS19235 PF12850 Calcineurin-like phosphoesterase superfamily domain RG48_RS19245 PF00731 AIR carboxylase RG48_RS19250 PF02222 ATP-grasp domain RG48_RS19250 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RG48_RS19255 PF00696 Amino acid kinase family RG48_RS19260 PF11392 Protein of unknown function (DUF2877) RG48_RS19270 PF02615 Malate/L-lactate dehydrogenase RG48_RS19275 PF01546 Peptidase family M20/M25/M40 RG48_RS19280 PF07883 Cupin domain RG48_RS19280 PF05899 Protein of unknown function (DUF861) RG48_RS19285 PF02595 Glycerate kinase family RG48_RS19290 PF00860 Permease family RG48_RS19295 PF01979 Amidohydrolase family RG48_RS19300 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RG48_RS19305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RG48_RS19305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RG48_RS19310 PF01261 Xylose isomerase-like TIM barrel RG48_RS19315 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RG48_RS19315 PF00205 Thiamine pyrophosphate enzyme, central domain RG48_RS19315 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RG48_RS19320 PF01614 Bacterial transcriptional regulator RG48_RS19320 PF09339 IclR helix-turn-helix domain RG48_RS19325 PF04115 Ureidoglycolate lyase RG48_RS19330 PF03466 LysR substrate binding domain RG48_RS19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS19345 PF02371 Transposase IS116/IS110/IS902 family RG48_RS19345 PF01548 Transposase RG48_RS19355 PF00005 ABC transporter RG48_RS19360 PF13472 GDSL-like Lipase/Acylhydrolase family RG48_RS19365 PF00106 short chain dehydrogenase RG48_RS19370 PF00085 Thioredoxin RG48_RS19375 PF03649 Uncharacterised protein family (UPF0014) RG48_RS19380 PF00005 ABC transporter RG48_RS19385 PF16200 C-terminal region of band_7 RG48_RS19385 PF01145 SPFH domain / Band 7 family RG48_RS19390 PF01957 NfeD-like C-terminal, partner-binding RG48_RS19395 PF13411 MerR HTH family regulatory protein RG48_RS19405 PF13520 Amino acid permease RG48_RS19410 PF04960 Glutaminase RG48_RS19415 PF00403 Heavy-metal-associated domain RG48_RS19425 PF02371 Transposase IS116/IS110/IS902 family RG48_RS19425 PF01548 Transposase RG48_RS19435 PF01381 Helix-turn-helix RG48_RS19440 PF01963 TraB family RG48_RS19445 PF04073 Aminoacyl-tRNA editing domain RG48_RS19450 PF00149 Calcineurin-like phosphoesterase RG48_RS19450 PF02872 5'-nucleotidase, C-terminal domain RG48_RS19460 PF07690 Major Facilitator Superfamily RG48_RS19465 PF00999 Sodium/hydrogen exchanger family RG48_RS19465 PF02254 TrkA-N domain RG48_RS19470 PF00294 pfkB family carbohydrate kinase RG48_RS19475 PF07859 alpha/beta hydrolase fold RG48_RS19480 PF00762 Ferrochelatase RG48_RS19485 PF05191 Adenylate kinase, active site lid RG48_RS19490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS19490 PF00183 Hsp90 protein RG48_RS19495 PF02132 RecR protein RG48_RS19495 PF13662 Toprim domain RG48_RS19500 PF02575 YbaB/EbfC DNA-binding family RG48_RS19505 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RG48_RS19505 PF12170 DNA polymerase III tau subunit V interacting with alpha RG48_RS19505 PF12169 DNA polymerase III subunits gamma and tau domain III RG48_RS19510 PF00156 Phosphoribosyl transferase domain RG48_RS19520 PF04304 Protein of unknown function (DUF454) RG48_RS19525 PF07445 Primosomal replication protein priC RG48_RS19530 PF10689 Protein of unknown function (DUF2496) RG48_RS19535 PF12794 Mechanosensitive ion channel inner membrane domain 1 RG48_RS19535 PF12795 Mechanosensitive ion channel porin domain RG48_RS19535 PF00924 Mechanosensitive ion channel RG48_RS19545 PF00440 Bacterial regulatory proteins, tetR family RG48_RS19545 PF08361 MAATS-type transcriptional repressor, C-terminal region RG48_RS19550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS19550 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS19555 PF00873 AcrB/AcrD/AcrF family RG48_RS19560 PF10757 Biofilm formation regulator YbaJ RG48_RS19565 PF05321 Haemolysin expression modulating protein RG48_RS19570 PF12464 Maltose acetyltransferase RG48_RS19570 PF14602 Hexapeptide repeat of succinyl-transferase RG48_RS19575 PF10777 Inner membrane protein YlaC RG48_RS19580 PF12792 CSS motif domain associated with EAL RG48_RS19580 PF00563 EAL domain RG48_RS19585 PF07237 Protein of unknown function (DUF1428) RG48_RS19595 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RG48_RS19600 PF09619 Type III secretion system lipoprotein chaperone (YscW) RG48_RS19610 PF00909 Ammonium Transporter Family RG48_RS19615 PF00543 Nitrogen regulatory protein P-II RG48_RS19620 PF00005 ABC transporter RG48_RS19620 PF00664 ABC transporter transmembrane region RG48_RS19625 PF00664 ABC transporter transmembrane region RG48_RS19625 PF00005 ABC transporter RG48_RS19630 PF13404 AsnC-type helix-turn-helix domain RG48_RS19630 PF01037 Lrp/AsnC ligand binding domain RG48_RS19640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS19640 PF12793 Sugar transport-related sRNA regulator N-term RG48_RS19645 PF06508 Queuosine biosynthesis protein QueC RG48_RS19660 PF13145 PPIC-type PPIASE domain RG48_RS19665 PF00216 Bacterial DNA-binding protein RG48_RS19670 PF02190 ATP-dependent protease La (LON) substrate-binding domain RG48_RS19670 PF05362 Lon protease (S16) C-terminal proteolytic domain RG48_RS19670 PF00004 ATPase family associated with various cellular activities (AAA) RG48_RS19675 PF07724 AAA domain (Cdc48 subfamily) RG48_RS19675 PF10431 C-terminal, D2-small domain, of ClpB protein RG48_RS19675 PF06689 ClpX C4-type zinc finger RG48_RS19680 PF00574 Clp protease RG48_RS19685 PF05697 Bacterial trigger factor protein (TF) RG48_RS19685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RG48_RS19685 PF05698 Bacterial trigger factor protein (TF) C-terminus RG48_RS19695 PF01722 BolA-like protein RG48_RS19705 PF03923 Uncharacterized lipoprotein RG48_RS19705 PF08139 Prokaryotic membrane lipoprotein lipid attachment site RG48_RS19710 PF07690 Major Facilitator Superfamily RG48_RS19715 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RG48_RS19715 PF06481 COX Aromatic Rich Motif RG48_RS19720 PF00115 Cytochrome C and Quinol oxidase polypeptide I RG48_RS19725 PF00510 Cytochrome c oxidase subunit III RG48_RS19730 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RG48_RS19735 PF01040 UbiA prenyltransferase family RG48_RS19740 PF07690 Major Facilitator Superfamily RG48_RS19745 PF04461 Protein of unknown function (DUF520) RG48_RS19750 PF02558 Ketopantoate reductase PanE/ApbA RG48_RS19750 PF08546 Ketopantoate reductase PanE/ApbA C terminal RG48_RS19755 PF01965 DJ-1/PfpI family RG48_RS19760 PF02926 THUMP domain RG48_RS19760 PF02568 Thiamine biosynthesis protein (ThiI) RG48_RS19765 PF02609 Exonuclease VII small subunit RG48_RS19770 PF00348 Polyprenyl synthetase RG48_RS19775 PF02780 Transketolase, C-terminal domain RG48_RS19775 PF02779 Transketolase, pyrimidine binding domain RG48_RS19775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RG48_RS19780 PF00248 Aldo/keto reductase family RG48_RS19785 PF04608 Phosphatidylglycerophosphatase A RG48_RS19790 PF02769 AIR synthase related protein, C-terminal domain RG48_RS19790 PF00586 AIR synthase related protein, N-terminal domain RG48_RS19795 PF01029 NusB family RG48_RS19800 PF00885 6,7-dimethyl-8-ribityllumazine synthase RG48_RS19805 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RG48_RS19805 PF01872 RibD C-terminal domain RG48_RS19810 PF03477 ATP cone domain RG48_RS19815 PF11622 Protein of unknown function (DUF3251) RG48_RS19820 PF03502 Nucleoside-specific channel-forming protein, Tsx RG48_RS19825 PF01548 Transposase RG48_RS19825 PF02371 Transposase IS116/IS110/IS902 family RG48_RS19830 PF01844 HNH endonuclease RG48_RS19835 PF07549 SecD/SecF GG Motif RG48_RS19835 PF02355 Protein export membrane protein RG48_RS19840 PF07549 SecD/SecF GG Motif RG48_RS19840 PF02355 Protein export membrane protein RG48_RS19840 PF13721 SecD export protein N-terminal TM region RG48_RS19845 PF02699 Preprotein translocase subunit RG48_RS19850 PF01702 Queuine tRNA-ribosyltransferase RG48_RS19855 PF02547 Queuosine biosynthesis protein RG48_RS19860 PF04336 Acyl carrier protein phosphodiesterase RG48_RS19865 PF00128 Alpha amylase, catalytic domain RG48_RS19865 PF02903 Alpha amylase, N-terminal ig-like domain RG48_RS19870 PF00324 Amino acid permease RG48_RS19875 PF05525 Branched-chain amino acid transport protein RG48_RS19880 PF11808 Phosphate regulon sensor protein PhoR RG48_RS19880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS19880 PF00989 PAS fold RG48_RS19880 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS19885 PF00072 Response regulator receiver domain RG48_RS19885 PF00486 Transcriptional regulatory protein, C terminal RG48_RS19890 PF00149 Calcineurin-like phosphoesterase RG48_RS19890 PF12320 Type 5 capsule protein repressor C-terminal domain RG48_RS19895 PF13476 AAA domain RG48_RS19900 PF07690 Major Facilitator Superfamily RG48_RS19905 PF00480 ROK family RG48_RS19910 PF04381 Putative exonuclease, RdgC RG48_RS19915 PF10971 Protein of unknown function (DUF2773) RG48_RS19925 PF06865 Pyrimidine/purine nucleoside phosphorylase RG48_RS19930 PF07302 AroM protein RG48_RS19940 PF16362 YaiA protein RG48_RS19945 PF01202 Shikimate kinase RG48_RS19950 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RG48_RS19955 PF14748 Pyrroline-5-carboxylate reductase dimerisation RG48_RS19955 PF03807 NADP oxidoreductase coenzyme F420-dependent RG48_RS19960 PF00990 Diguanylate cyclase, GGDEF domain RG48_RS19960 PF05230 MASE2 domain RG48_RS19965 PF07769 psiF repeat RG48_RS19970 PF00245 Alkaline phosphatase RG48_RS19975 PF10796 Sigma-S stabilisation anti-adaptor protein RG48_RS19985 PF01820 D-ala D-ala ligase N-terminus RG48_RS19985 PF07478 D-ala D-ala ligase C-terminus RG48_RS19990 PF10953 Protein of unknown function (DUF2754) RG48_RS19995 PF10954 Protein of unknown function (DUF2755) RG48_RS20000 PF07759 Protein of unknown function (DUF1615) RG48_RS20005 PF05992 SbmA/BacA-like family RG48_RS20015 PF00144 Beta-lactamase RG48_RS20020 PF15977 Winged helix-turn-helix DNA binding RG48_RS20025 PF03797 Autotransporter beta-domain RG48_RS20025 PF03212 Pertactin RG48_RS20035 PF00490 Delta-aminolevulinic acid dehydratase RG48_RS20040 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RG48_RS20045 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS20050 PF00005 ABC transporter RG48_RS20055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RG48_RS20065 PF02585 GlcNAc-PI de-N-acetylase RG48_RS20075 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS20085 PF02583 Metal-sensitive transcriptional repressor RG48_RS20090 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS20090 PF00107 Zinc-binding dehydrogenase RG48_RS20095 PF00756 Putative esterase RG48_RS20100 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) RG48_RS20105 PF07690 Major Facilitator Superfamily RG48_RS20115 PF00682 HMGL-like RG48_RS20115 PF07836 DmpG-like communication domain RG48_RS20120 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation RG48_RS20120 PF01118 Semialdehyde dehydrogenase, NAD binding domain RG48_RS20125 PF01557 Fumarylacetoacetate (FAA) hydrolase family RG48_RS20130 PF12697 Alpha/beta hydrolase family RG48_RS20135 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RG48_RS20140 PF01494 FAD binding domain RG48_RS20145 PF09339 IclR helix-turn-helix domain RG48_RS20145 PF01614 Bacterial transcriptional regulator RG48_RS20150 PF00356 Bacterial regulatory proteins, lacI family RG48_RS20160 PF02929 Beta galactosidase small chain RG48_RS20160 PF02837 Glycosyl hydrolases family 2, sugar binding domain RG48_RS20160 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RG48_RS20160 PF00703 Glycosyl hydrolases family 2 RG48_RS20160 PF16353 Domain of unknown function(DUF4981) RG48_RS20165 PF01306 LacY proton/sugar symporter RG48_RS20170 PF12464 Maltose acetyltransferase RG48_RS20170 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS20175 PF07690 Major Facilitator Superfamily RG48_RS20180 PF02560 Cyanate lyase C-terminal domain RG48_RS20185 PF00484 Carbonic anhydrase RG48_RS20190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS20190 PF03466 LysR substrate binding domain RG48_RS20195 PF07969 Amidohydrolase family RG48_RS20200 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RG48_RS20205 PF02371 Transposase IS116/IS110/IS902 family RG48_RS20205 PF01548 Transposase RG48_RS20220 PF13193 AMP-binding enzyme C-terminal domain RG48_RS20220 PF00501 AMP-binding enzyme RG48_RS20220 PF16177 Acetyl-coenzyme A synthetase N-terminus RG48_RS20225 PF03972 MmgE/PrpD family RG48_RS20230 PF00285 Citrate synthase, C-terminal domain RG48_RS20245 PF02954 Bacterial regulatory protein, Fis family RG48_RS20245 PF06506 Propionate catabolism activator RG48_RS20245 PF00158 Sigma-54 interaction domain RG48_RS20250 PF07338 Protein of unknown function (DUF1471) RG48_RS20255 PF01810 LysE type translocator RG48_RS20270 PF00107 Zinc-binding dehydrogenase RG48_RS20270 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS20275 PF07969 Amidohydrolase family RG48_RS20280 PF00696 Amino acid kinase family RG48_RS20290 PF06545 Protein of unknown function (DUF1116) RG48_RS20295 PF02629 CoA binding domain RG48_RS20295 PF00549 CoA-ligase RG48_RS20300 PF11392 Protein of unknown function (DUF2877) RG48_RS20305 PF12796 Ankyrin repeats (3 copies) RG48_RS20315 PF06496 Protein of unknown function (DUF1097) RG48_RS20320 PF03466 LysR substrate binding domain RG48_RS20320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS20325 PF00563 EAL domain RG48_RS20325 PF00196 Bacterial regulatory proteins, luxR family RG48_RS20340 PF02028 BCCT, betaine/carnitine/choline family transporter RG48_RS20350 PF13977 BetI-type transcriptional repressor, C-terminal RG48_RS20350 PF00440 Bacterial regulatory proteins, tetR family RG48_RS20355 PF00171 Aldehyde dehydrogenase family RG48_RS20360 PF00732 GMC oxidoreductase RG48_RS20360 PF05199 GMC oxidoreductase RG48_RS20380 PF02589 LUD domain RG48_RS20385 PF02589 LUD domain RG48_RS20385 PF13183 4Fe-4S dicluster domain RG48_RS20385 PF11870 Domain of unknown function (DUF3390) RG48_RS20390 PF02754 Cysteine-rich domain RG48_RS20395 PF12852 Cupin RG48_RS20395 PF12833 Helix-turn-helix domain RG48_RS20400 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS20400 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RG48_RS20405 PF07338 Protein of unknown function (DUF1471) RG48_RS20410 PF04224 Protein of unknown function, DUF417 RG48_RS20415 PF12833 Helix-turn-helix domain RG48_RS20420 PF11924 Inverse autotransporter, beta-domain RG48_RS20435 PF01197 Ribosomal protein L31 RG48_RS20440 PF00444 Ribosomal protein L36 RG48_RS20455 PF00196 Bacterial regulatory proteins, luxR family RG48_RS20460 PF16449 Fimbrillin MatB RG48_RS20465 PF18649 EcpB C-terminal domain RG48_RS20470 PF15976 CS1-pili formation C-terminal RG48_RS20470 PF16967 E-set like domain RG48_RS20485 PF03692 Putative zinc- or iron-chelating domain RG48_RS20495 PF07274 Protein of unknown function (DUF1440) RG48_RS20505 PF01799 [2Fe-2S] binding domain RG48_RS20505 PF00111 2Fe-2S iron-sulfur cluster binding domain RG48_RS20510 PF00941 FAD binding domain in molybdopterin dehydrogenase RG48_RS20510 PF03450 CO dehydrogenase flavoprotein C-terminal domain RG48_RS20515 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RG48_RS20515 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RG48_RS20520 PF13478 XdhC Rossmann domain RG48_RS20520 PF02625 XdhC and CoxI family RG48_RS20525 PF03466 LysR substrate binding domain RG48_RS20530 PF00665 Integrase core domain RG48_RS20530 PF13276 HTH-like domain RG48_RS20535 PF12833 Helix-turn-helix domain RG48_RS20545 PF03400 IS1 transposase RG48_RS20550 PF03811 InsA N-terminal domain RG48_RS20550 PF12759 InsA C-terminal domain RG48_RS20565 PF09992 Phosphodiester glycosidase RG48_RS20575 PF01544 CorA-like Mg2+ transporter protein RG48_RS20590 PF12759 InsA C-terminal domain RG48_RS20590 PF03811 InsA N-terminal domain RG48_RS20595 PF03400 IS1 transposase RG48_RS20620 PF00294 pfkB family carbohydrate kinase RG48_RS20625 PF02264 LamB porin RG48_RS20625 PF11471 Maltoporin periplasmic N-terminal extension RG48_RS20630 PF02378 Phosphotransferase system, EIIC RG48_RS20630 PF00367 phosphotransferase system, EIIB RG48_RS20635 PF00251 Glycosyl hydrolases family 32 N-terminal domain RG48_RS20635 PF08244 Glycosyl hydrolases family 32 C terminal RG48_RS20640 PF00356 Bacterial regulatory proteins, lacI family RG48_RS20650 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) RG48_RS20655 PF03400 IS1 transposase RG48_RS20685 PF01526 Tn3 transposase DDE domain RG48_RS20685 PF13700 Domain of unknown function (DUF4158) RG48_RS20690 PF01609 Transposase DDE domain RG48_RS20690 PF05598 Transposase domain (DUF772) RG48_RS20695 PF01926 50S ribosome-binding GTPase RG48_RS20700 PF06067 Domain of unknown function (DUF932) RG48_RS20705 PF13280 WYL domain RG48_RS20705 PF08220 DeoR-like helix-turn-helix domain RG48_RS20725 PF13333 Integrase core domain RG48_RS20725 PF13276 HTH-like domain RG48_RS20725 PF00665 Integrase core domain RG48_RS20735 PF04851 Type III restriction enzyme, res subunit RG48_RS20735 PF08774 VRR-NUC domain RG48_RS20740 PF18273 Type III R-M EcoP15I C-terminal domain RG48_RS20740 PF01555 DNA methylase RG48_RS20770 PF01926 50S ribosome-binding GTPase RG48_RS20775 PF06067 Domain of unknown function (DUF932) RG48_RS20800 PF03230 Antirestriction protein RG48_RS20805 PF04002 RadC-like JAB domain RG48_RS20810 PF06174 Protein of unknown function (DUF987) RG48_RS20815 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A RG48_RS20820 PF06755 CbtA_toxin of type IV toxin-antitoxin system RG48_RS20830 PF00171 Aldehyde dehydrogenase family RG48_RS20835 PF00696 Amino acid kinase family RG48_RS20835 PF01472 PUA domain RG48_RS20840 PF00267 Gram-negative porin RG48_RS20845 PF07417 Sigma factor-binding transcriptional regulator Crl RG48_RS20850 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) RG48_RS20855 PF00156 Phosphoribosyl transferase domain RG48_RS20860 PF07687 Peptidase dimerisation domain RG48_RS20860 PF01546 Peptidase family M20/M25/M40 RG48_RS20865 PF00472 RF-1 domain RG48_RS20875 PF13673 Acetyltransferase (GNAT) domain RG48_RS20880 PF13957 Toxin YafO, type II toxin-antitoxin system RG48_RS20890 PF00817 impB/mucB/samB family RG48_RS20890 PF11798 IMS family HHH motif RG48_RS20890 PF11799 impB/mucB/samB family C-terminal domain RG48_RS20895 PF00691 OmpA family RG48_RS20895 PF13677 Membrane MotB of proton-channel complex MotA/MotB RG48_RS20900 PF00771 FHIPEP family RG48_RS20920 PF00877 NlpC/P60 family RG48_RS20925 PF03734 L,D-transpeptidase catalytic domain RG48_RS20930 PF13230 Glutamine amidotransferases class-II RG48_RS20935 PF13580 SIS domain RG48_RS20940 PF09317 Domain of unknown function (DUF1974) RG48_RS20940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RG48_RS20940 PF02770 Acyl-CoA dehydrogenase, middle domain RG48_RS20940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RG48_RS20950 PF00795 Carbon-nitrogen hydrolase RG48_RS20955 PF13808 DDE_Tnp_1-associated RG48_RS20955 PF01609 Transposase DDE domain RG48_RS20965 PF05593 RHS Repeat RG48_RS20965 PF03527 RHS protein RG48_RS20965 PF14220 Domain of unknown function (DUF4329) RG48_RS20970 PF04717 Type VI secretion system, phage-baseplate injector RG48_RS20980 PF05638 Type VI secretion system effector, Hcp RG48_RS20995 PF14331 ImcF-related N-terminal domain RG48_RS20995 PF06744 Type VI secretion protein IcmF C-terminal RG48_RS20995 PF06761 Intracellular multiplication and human macrophage-killing RG48_RS21005 PF05638 Type VI secretion system effector, Hcp RG48_RS21030 PF00929 Exonuclease RG48_RS21035 PF00075 RNase H RG48_RS21040 PF08241 Methyltransferase domain RG48_RS21045 PF00753 Metallo-beta-lactamase superfamily RG48_RS21045 PF16123 Hydroxyacylglutathione hydrolase C-terminus RG48_RS21050 PF01476 LysM domain RG48_RS21050 PF01464 Transglycosylase SLT domain RG48_RS21055 PF08241 Methyltransferase domain RG48_RS21060 PF03372 Endonuclease/Exonuclease/phosphatase family RG48_RS21065 PF03466 LysR substrate binding domain RG48_RS21065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS21070 PF00248 Aldo/keto reductase family RG48_RS21105 PF00005 ABC transporter RG48_RS21105 PF09383 NIL domain RG48_RS21110 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS21115 PF03180 NLPA lipoprotein RG48_RS21120 PF16358 RcsF lipoprotein RG48_RS21125 PF18389 TrmO C-terminal domain RG48_RS21125 PF01980 tRNA-methyltransferase O RG48_RS21130 PF04073 Aminoacyl-tRNA editing domain RG48_RS21130 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RG48_RS21130 PF03129 Anticodon binding domain RG48_RS21140 PF01548 Transposase RG48_RS21140 PF02371 Transposase IS116/IS110/IS902 family RG48_RS21145 PF17185 NlpE C-terminal OB domain RG48_RS21145 PF04170 NlpE N-terminal domain RG48_RS21150 PF00472 RF-1 domain RG48_RS21155 PF07152 YaeQ protein RG48_RS21160 PF06786 Uncharacterised protein family (UPF0253) RG48_RS21165 PF07073 Modulator of Rho-dependent transcription termination (ROF) RG48_RS21170 PF11734 TilS substrate C-terminal domain RG48_RS21170 PF01171 PP-loop family RG48_RS21170 PF09179 TilS substrate binding domain RG48_RS21175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RG48_RS21185 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RG48_RS21190 PF14579 Helix-hairpin-helix motif RG48_RS21190 PF02811 PHP domain RG48_RS21190 PF01336 OB-fold nucleic acid binding domain RG48_RS21190 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RG48_RS21190 PF07733 Bacterial DNA polymerase III alpha NTPase domain RG48_RS21195 PF01351 Ribonuclease HII RG48_RS21200 PF02684 Lipid-A-disaccharide synthetase RG48_RS21205 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS21205 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RG48_RS21210 PF07977 FabA-like domain RG48_RS21215 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RG48_RS21215 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS21220 PF03938 Outer membrane protein (OmpH-like) RG48_RS21225 PF01103 Surface antigen RG48_RS21225 PF07244 Surface antigen variable number repeat RG48_RS21230 PF17820 PDZ domain RG48_RS21230 PF02163 Peptidase family M50 RG48_RS21240 PF01255 Putative undecaprenyl diphosphate synthase RG48_RS21245 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RG48_RS21245 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RG48_RS21245 PF13288 DXP reductoisomerase C-terminal domain RG48_RS21250 PF01765 Ribosome recycling factor RG48_RS21255 PF00696 Amino acid kinase family RG48_RS21260 PF00889 Elongation factor TS RG48_RS21270 PF00318 Ribosomal protein S2 RG48_RS21280 PF00557 Metallopeptidase family M24 RG48_RS21285 PF08335 GlnD PII-uridylyltransferase RG48_RS21285 PF01909 Nucleotidyltransferase domain RG48_RS21285 PF01966 HD domain RG48_RS21285 PF01842 ACT domain RG48_RS21290 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS21290 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RG48_RS21290 PF14602 Hexapeptide repeat of succinyl-transferase RG48_RS21295 PF11944 Protein of unknown function (DUF3461) RG48_RS21300 PF13556 PucR C-terminal helix-turn-helix domain RG48_RS21300 PF17853 GGDEF-like domain RG48_RS21300 PF05651 Putative sugar diacid recognition RG48_RS21305 PF00595 PDZ domain RG48_RS21315 PF13286 Phosphohydrolase-associated domain RG48_RS21315 PF01966 HD domain RG48_RS21320 PF01048 Phosphorylase superfamily RG48_RS21325 PF01497 Periplasmic binding protein RG48_RS21330 PF03458 UPF0126 domain RG48_RS21335 PF01521 Iron-sulphur cluster biosynthesis RG48_RS21340 PF00654 Voltage gated chloride channel RG48_RS21345 PF00202 Aminotransferase class-III RG48_RS21350 PF01032 FecCD transport family RG48_RS21355 PF01497 Periplasmic binding protein RG48_RS21360 PF00005 ABC transporter RG48_RS21365 PF00593 TonB dependent receptor RG48_RS21365 PF07715 TonB-dependent Receptor Plug Domain RG48_RS21370 PF00905 Penicillin binding protein transpeptidase domain RG48_RS21370 PF00912 Transglycosylase RG48_RS21370 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal RG48_RS21370 PF14814 Bifunctional transglycosylase second domain RG48_RS21380 PF00270 DEAD/DEAH box helicase RG48_RS21380 PF00271 Helicase conserved C-terminal domain RG48_RS21380 PF04408 Helicase associated domain (HA2) RG48_RS21380 PF08482 ATP-dependent helicase C-terminal RG48_RS21385 PF02834 LigT like Phosphoesterase RG48_RS21390 PF17746 SfsA N-terminal OB domain RG48_RS21390 PF03749 Sugar fermentation stimulation protein RE domain RG48_RS21395 PF01258 Prokaryotic dksA/traR C4-type zinc finger RG48_RS21400 PF00749 tRNA synthetases class I (E and Q), catalytic domain RG48_RS21405 PF12627 Probable RNA and SrmB- binding site of polymerase A RG48_RS21405 PF12626 Polymerase A arginine-rich C-terminus RG48_RS21405 PF01743 Poly A polymerase head domain RG48_RS21410 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RG48_RS21415 PF00419 Fimbrial protein RG48_RS21420 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS21420 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS21425 PF13953 PapC C-terminal domain RG48_RS21425 PF13954 PapC N-terminal domain RG48_RS21425 PF00577 Outer membrane usher protein RG48_RS21430 PF00419 Fimbrial protein RG48_RS21435 PF00419 Fimbrial protein RG48_RS21440 PF00419 Fimbrial protein RG48_RS21445 PF00419 Fimbrial protein RG48_RS21450 PF02548 Ketopantoate hydroxymethyltransferase RG48_RS21455 PF02569 Pantoate-beta-alanine ligase RG48_RS21460 PF04754 Putative transposase, YhgA-like RG48_RS21475 PF02261 Aspartate decarboxylase RG48_RS21480 PF01522 Polysaccharide deacetylase RG48_RS21485 PF03610 PTS system fructose IIA component RG48_RS21490 PF01061 ABC-2 type transporter RG48_RS21495 PF00005 ABC transporter RG48_RS21500 PF00484 Carbonic anhydrase RG48_RS21505 PF00156 Phosphoribosyl transferase domain RG48_RS21510 PF01011 PQQ enzyme repeat RG48_RS21515 PF00394 Multicopper oxidase RG48_RS21515 PF07731 Multicopper oxidase RG48_RS21515 PF07732 Multicopper oxidase RG48_RS21520 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) RG48_RS21525 PF17284 Spermidine synthase tetramerisation domain RG48_RS21530 PF02675 S-adenosylmethionine decarboxylase RG48_RS21535 PF06062 Uncharacterised protein family (UPF0231) RG48_RS21540 PF11791 Aconitate B N-terminal domain RG48_RS21540 PF06434 Aconitate hydratase 2 N-terminus RG48_RS21540 PF00330 Aconitase family (aconitate hydratase) RG48_RS21555 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RG48_RS21555 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS21560 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RG48_RS21560 PF00364 Biotin-requiring enzyme RG48_RS21560 PF02817 e3 binding domain RG48_RS21565 PF00456 Transketolase, thiamine diphosphate binding domain RG48_RS21565 PF17831 Pyruvate dehydrogenase E1 component middle domain RG48_RS21575 PF00392 Bacterial regulatory proteins, gntR family RG48_RS21575 PF07729 FCD domain RG48_RS21580 PF00324 Amino acid permease RG48_RS21585 PF17113 Regulatory signalling modulator protein AmpE RG48_RS21590 PF01510 N-acetylmuramoyl-L-alanine amidase RG48_RS21595 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RG48_RS21595 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RG48_RS21605 PF07963 Prokaryotic N-terminal methylation motif RG48_RS21610 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RG48_RS21610 PF00437 Type II/IV secretion system protein RG48_RS21615 PF00482 Type II secretion system (T2SS), protein F RG48_RS21620 PF00478 IMP dehydrogenase / GMP reductase domain RG48_RS21625 PF01121 Dephospho-CoA kinase RG48_RS21630 PF07072 Cell division protein RG48_RS21635 PF03884 DNA gyrase inhibitor YacG RG48_RS21640 PF00293 NUDIX domain RG48_RS21645 PF01043 SecA preprotein cross-linking domain RG48_RS21645 PF07517 SecA DEAD-like domain RG48_RS21645 PF07516 SecA Wing and Scaffold domain RG48_RS21645 PF02810 SEC-C motif RG48_RS21650 PF06558 Secretion monitor precursor protein (SecM) RG48_RS21655 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RG48_RS21660 PF00091 Tubulin/FtsZ family, GTPase domain RG48_RS21660 PF12327 FtsZ family, C-terminal domain RG48_RS21665 PF02491 SHS2 domain inserted in FTSA RG48_RS21670 PF03799 Cell division protein FtsQ RG48_RS21670 PF08478 POTRA domain, FtsQ-type RG48_RS21675 PF01820 D-ala D-ala ligase N-terminus RG48_RS21675 PF07478 D-ala D-ala ligase C-terminus RG48_RS21680 PF01225 Mur ligase family, catalytic domain RG48_RS21680 PF02875 Mur ligase family, glutamate ligase domain RG48_RS21680 PF08245 Mur ligase middle domain RG48_RS21685 PF04101 Glycosyltransferase family 28 C-terminal domain RG48_RS21685 PF03033 Glycosyltransferase family 28 N-terminal domain RG48_RS21690 PF01098 Cell cycle protein RG48_RS21695 PF08245 Mur ligase middle domain RG48_RS21695 PF02875 Mur ligase family, glutamate ligase domain RG48_RS21700 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RG48_RS21700 PF00953 Glycosyl transferase family 4 RG48_RS21705 PF08245 Mur ligase middle domain RG48_RS21705 PF02875 Mur ligase family, glutamate ligase domain RG48_RS21705 PF01225 Mur ligase family, catalytic domain RG48_RS21710 PF02875 Mur ligase family, glutamate ligase domain RG48_RS21710 PF08245 Mur ligase middle domain RG48_RS21710 PF01225 Mur ligase family, catalytic domain RG48_RS21715 PF00905 Penicillin binding protein transpeptidase domain RG48_RS21715 PF03717 Penicillin-binding Protein dimerisation domain RG48_RS21720 PF04999 Cell division protein FtsL RG48_RS21725 PF01795 MraW methylase family RG48_RS21730 PF02381 MraZ protein, putative antitoxin-like RG48_RS21740 PF00356 Bacterial regulatory proteins, lacI family RG48_RS21740 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RG48_RS21750 PF10369 Small subunit of acetolactate synthase RG48_RS21755 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RG48_RS21755 PF00205 Thiamine pyrophosphate enzyme, central domain RG48_RS21755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RG48_RS21760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS21760 PF03466 LysR substrate binding domain RG48_RS21765 PF08054 Leucine operon leader peptide RG48_RS21770 PF08502 LeuA allosteric (dimerisation) domain RG48_RS21770 PF00682 HMGL-like RG48_RS21775 PF00180 Isocitrate/isopropylmalate dehydrogenase RG48_RS21780 PF00330 Aconitase family (aconitate hydratase) RG48_RS21785 PF00694 Aconitase C-terminal domain RG48_RS21790 PF07690 Major Facilitator Superfamily RG48_RS21800 PF12793 Sugar transport-related sRNA regulator N-term RG48_RS21800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RG48_RS21810 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS21815 PF00005 ABC transporter RG48_RS21820 PF09335 SNARE associated Golgi protein RG48_RS21825 PF02311 AraC-like ligand binding domain RG48_RS21825 PF12833 Helix-turn-helix domain RG48_RS21835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RG48_RS21840 PF11762 L-arabinose isomerase C-terminal domain RG48_RS21840 PF02610 L-arabinose isomerase RG48_RS21845 PF00596 Class II Aldolase and Adducin N-terminal domain RG48_RS21850 PF03104 DNA polymerase family B, exonuclease domain RG48_RS21850 PF00136 DNA polymerase family B RG48_RS21855 PF18339 RapA N-terminal Tudor like domain 1 RG48_RS21855 PF00271 Helicase conserved C-terminal domain RG48_RS21855 PF18337 RapA N-terminal Tudor like domain RG48_RS21855 PF00176 SNF2 family N-terminal domain RG48_RS21855 PF12137 RNA polymerase recycling family C-terminal RG48_RS21860 PF00849 RNA pseudouridylate synthase RG48_RS21865 PF05099 Tellurite resistance protein TerB RG48_RS21865 PF00226 DnaJ domain RG48_RS21870 PF04453 LPS transport system D RG48_RS21870 PF03968 OstA-like protein RG48_RS21875 PF00639 PPIC-type PPIASE domain RG48_RS21875 PF09312 SurA N-terminal domain RG48_RS21880 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RG48_RS21885 PF00398 Ribosomal RNA adenine dimethylase RG48_RS21890 PF04379 ApaG domain RG48_RS21895 PF00149 Calcineurin-like phosphoesterase RG48_RS21915 PF00186 Dihydrofolate reductase RG48_RS21925 PF02254 TrkA-N domain RG48_RS21925 PF00999 Sodium/hydrogen exchanger family RG48_RS21930 PF02525 Flavodoxin-like fold RG48_RS21935 PF00083 Sugar (and other) transporter RG48_RS21945 PF01494 FAD binding domain RG48_RS21950 PF00766 Electron transfer flavoprotein FAD-binding domain RG48_RS21950 PF01012 Electron transfer flavoprotein domain RG48_RS21955 PF01012 Electron transfer flavoprotein domain RG48_RS21960 PF02028 BCCT, betaine/carnitine/choline family transporter RG48_RS21965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RG48_RS21965 PF02770 Acyl-CoA dehydrogenase, middle domain RG48_RS21965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RG48_RS21970 PF02515 CoA-transferase family III RG48_RS21975 PF00501 AMP-binding enzyme RG48_RS21975 PF13193 AMP-binding enzyme C-terminal domain RG48_RS21980 PF00378 Enoyl-CoA hydratase/isomerase RG48_RS21985 PF00132 Bacterial transferase hexapeptide (six repeats) RG48_RS21990 PF07180 CaiF/GrlA transcriptional regulator RG48_RS22000 PF02142 MGS-like domain RG48_RS22000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RG48_RS22000 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RG48_RS22005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RG48_RS22005 PF00117 Glutamine amidotransferase class-I RG48_RS22010 PF01113 Dihydrodipicolinate reductase, N-terminus RG48_RS22010 PF05173 Dihydrodipicolinate reductase, C-terminus RG48_RS22015 PF01156 Inosine-uridine preferring nucleoside hydrolase RG48_RS22020 PF02401 LytB protein RG48_RS22025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RG48_RS22030 PF01252 Signal peptidase (SPase) II RG48_RS22035 PF08264 Anticodon-binding domain of tRNA RG48_RS22035 PF00133 tRNA synthetases class I (I, L, M and V) RG48_RS22035 PF06827 Zinc finger found in FPG and IleRS RG48_RS22040 PF01687 Riboflavin kinase RG48_RS22040 PF06574 FAD synthetase RG48_RS22045 PF10837 Protein of unknown function (DUF2575) RG48_RS22050 PF01649 Ribosomal protein S20 RG48_RS22060 PF13953 PapC C-terminal domain RG48_RS22060 PF00577 Outer membrane usher protein RG48_RS22060 PF13954 PapC N-terminal domain RG48_RS22070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS22070 PF03466 LysR substrate binding domain RG48_RS22075 PF06965 Na+/H+ antiporter 1 RG48_RS22080 PF01848 Hok/gef family RG48_RS22085 PF00684 DnaJ central domain RG48_RS22085 PF01556 DnaJ C terminal domain RG48_RS22085 PF00226 DnaJ domain RG48_RS22090 PF00012 Hsp70 protein RG48_RS22095 PF10807 Protein of unknown function (DUF2541) RG48_RS22100 PF03981 Ubiquinol-cytochrome C chaperone RG48_RS22100 PF13099 Domain of unknown function (DUF3944) RG48_RS22105 PF01184 GPR1/FUN34/yaaH family RG48_RS22110 PF00994 Probable molybdopterin binding domain RG48_RS22115 PF00923 Transaldolase/Fructose-6-phosphate aldolase RG48_RS22120 PF01235 Sodium:alanine symporter family RG48_RS22125 PF03883 Peroxide stress protein YaaA RG48_RS22130 PF01548 Transposase RG48_RS22130 PF02371 Transposase IS116/IS110/IS902 family RG48_RS22135 PF10697 Protein of unknown function (DUF2502) RG48_RS22145 PF00291 Pyridoxal-phosphate dependent enzyme RG48_RS22145 PF14821 Threonine synthase N terminus RG48_RS22150 PF08544 GHMP kinases C terminal RG48_RS22150 PF00288 GHMP kinases N terminal domain RG48_RS22155 PF01842 ACT domain RG48_RS22155 PF00696 Amino acid kinase family RG48_RS22155 PF03447 Homoserine dehydrogenase, NAD binding domain RG48_RS22155 PF13840 ACT domain RG48_RS22155 PF00742 Homoserine dehydrogenase RG48_RS22160 PF08254 Threonine leader peptide RG48_RS22165 PF00588 SpoU rRNA Methylase family RG48_RS22175 PF00072 Response regulator receiver domain RG48_RS22175 PF00486 Transcriptional regulatory protein, C terminal RG48_RS22180 PF06123 Inner membrane protein CreD RG48_RS22185 PF00672 HAMP domain RG48_RS22185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS22185 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS22190 PF00072 Response regulator receiver domain RG48_RS22190 PF00486 Transcriptional regulatory protein, C terminal RG48_RS22195 PF05981 CreA protein RG48_RS22200 PF06445 GyrI-like small molecule binding domain RG48_RS22200 PF12833 Helix-turn-helix domain RG48_RS22205 PF00300 Histidine phosphatase superfamily (branch 1) RG48_RS22210 PF01931 Protein of unknown function DUF84 RG48_RS22215 PF01371 Trp repressor protein RG48_RS22220 PF01464 Transglycosylase SLT domain RG48_RS22220 PF14718 Soluble lytic murein transglycosylase L domain RG48_RS22230 PF12848 ABC transporter RG48_RS22230 PF00005 ABC transporter RG48_RS22240 PF13521 AAA domain RG48_RS22240 PF01381 Helix-turn-helix RG48_RS22245 PF18073 Rubredoxin metal binding domain RG48_RS22250 PF18429 Domain of unknown function (DUF5609) RG48_RS22255 PF10144 Bacterial virulence factor haemolysin RG48_RS22260 PF10437 Bacterial lipoate protein ligase C-terminus RG48_RS22260 PF03099 Biotin/lipoate A/B protein ligase family RG48_RS22270 PF01048 Phosphorylase superfamily RG48_RS22275 PF01676 Metalloenzyme superfamily RG48_RS22280 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RG48_RS22280 PF00591 Glycosyl transferase family, a/b domain RG48_RS22280 PF02885 Glycosyl transferase family, helical bundle domain RG48_RS22285 PF01791 DeoC/LacD family aldolase RG48_RS22295 PF11230 Protein of unknown function (DUF3029) RG48_RS22300 PF04055 Radical SAM superfamily RG48_RS22305 PF01026 TatD related DNase RG48_RS22310 PF01734 Patatin-like phospholipase RG48_RS22315 PF07043 Protein of unknown function (DUF1328) RG48_RS22320 PF04972 BON domain RG48_RS22325 PF03144 Elongation factor Tu domain 2 RG48_RS22325 PF00009 Elongation factor Tu GTP binding domain RG48_RS22325 PF16658 Class II release factor RF3, C-terminal domain RG48_RS22330 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS22335 PF00583 Acetyltransferase (GNAT) family RG48_RS22340 PF03603 DNA polymerase III psi subunit RG48_RS22345 PF05175 Methyltransferase small domain RG48_RS22345 PF08468 Methyltransferase small domain N-terminal RG48_RS22370 PF07256 Protein of unknown function (DUF1435) RG48_RS22375 PF06276 Ferric iron reductase FhuF-like transporter RG48_RS22375 PF11575 FhuF 2Fe-2S C-terminal domain RG48_RS22380 PF00196 Bacterial regulatory proteins, luxR family RG48_RS22385 PF00196 Bacterial regulatory proteins, luxR family RG48_RS22390 PF06738 Putative threonine/serine exporter RG48_RS22395 PF12821 Threonine/Serine exporter, ThrE RG48_RS22400 PF17948 DnaT DNA-binding domain RG48_RS22405 PF01695 IstB-like ATP binding protein RG48_RS22410 PF10696 Protein of unknown function (DUF2501) RG48_RS22415 PF00884 Sulfatase RG48_RS22420 PF00107 Zinc-binding dehydrogenase RG48_RS22420 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS22425 PF07729 FCD domain RG48_RS22425 PF00392 Bacterial regulatory proteins, gntR family RG48_RS22430 PF07690 Major Facilitator Superfamily RG48_RS22435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RG48_RS22435 PF00672 HAMP domain RG48_RS22435 PF02203 Tar ligand binding domain homologue RG48_RS22440 PF01047 MarR family RG48_RS22445 PF01557 Fumarylacetoacetate (FAA) hydrolase family RG48_RS22450 PF00171 Aldehyde dehydrogenase family RG48_RS22455 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RG48_RS22460 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase RG48_RS22465 PF01557 Fumarylacetoacetate (FAA) hydrolase family RG48_RS22470 PF03328 HpcH/HpaI aldolase/citrate lyase family RG48_RS22475 PF07690 Major Facilitator Superfamily RG48_RS22485 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal RG48_RS22485 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal RG48_RS22490 PF01613 Flavin reductase like domain RG48_RS22495 PF13722 5TM C-terminal transporter carbon starvation CstA RG48_RS22495 PF02554 Carbon starvation protein CstA RG48_RS22500 PF04328 Selenoprotein, putative RG48_RS22505 PF02492 CobW/HypB/UreG, nucleotide-binding domain RG48_RS22505 PF07683 Cobalamin synthesis protein cobW C-terminal domain RG48_RS22510 PF01804 Penicillin amidase RG48_RS22515 PF06568 Domain of unknown function (DUF1127) RG48_RS22520 PF00155 Aminotransferase class I and II RG48_RS22520 PF00392 Bacterial regulatory proteins, gntR family RG48_RS22525 PF04754 Putative transposase, YhgA-like RG48_RS22530 PF07690 Major Facilitator Superfamily RG48_RS22535 PF04286 Protein of unknown function (DUF445) RG48_RS22540 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component RG48_RS22545 PF01869 BadF/BadG/BcrA/BcrD ATPase family RG48_RS22550 PF11823 Protein of unknown function (DUF3343) RG48_RS22555 PF06977 SdiA-regulated RG48_RS22560 PF06779 Uncharacterised MFS-type transporter YbfB RG48_RS22565 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RG48_RS22575 PF07670 Nucleoside recognition RG48_RS22580 PF07670 Nucleoside recognition RG48_RS22585 PF01979 Amidohydrolase family RG48_RS22590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS22590 PF03466 LysR substrate binding domain RG48_RS22595 PF04965 Gene 25-like lysozyme RG48_RS22605 PF10887 Protein of unknown function (DUF2686) RG48_RS22610 PF00392 Bacterial regulatory proteins, gntR family RG48_RS22610 PF07729 FCD domain RG48_RS22620 PF01232 Mannitol dehydrogenase Rossmann domain RG48_RS22620 PF08125 Mannitol dehydrogenase C-terminal domain RG48_RS22625 PF03786 D-mannonate dehydratase (UxuA) RG48_RS22635 PF02447 GntP family permease RG48_RS22640 PF09160 FimH, mannose binding RG48_RS22640 PF00419 Fimbrial protein RG48_RS22650 PF00419 Fimbrial protein RG48_RS22655 PF00577 Outer membrane usher protein RG48_RS22655 PF13953 PapC C-terminal domain RG48_RS22655 PF13954 PapC N-terminal domain RG48_RS22660 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RG48_RS22660 PF02753 Pili assembly chaperone PapD, C-terminal domain RG48_RS22665 PF00419 Fimbrial protein RG48_RS22670 PF00419 Fimbrial protein RG48_RS22680 PF00589 Phage integrase family RG48_RS22685 PF00589 Phage integrase family RG48_RS22695 PF06178 Oligogalacturonate-specific porin protein (KdgM) RG48_RS22705 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase RG48_RS22735 PF17345 Family of unknown function (DUF5375) RG48_RS22780 PF00589 Phage integrase family RG48_RS22780 PF13356 Arm DNA-binding domain RG48_RS22790 PF00107 Zinc-binding dehydrogenase RG48_RS22790 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS22795 PF05872 Bacterial protein of unknown function (DUF853) RG48_RS22800 PF03739 Lipopolysaccharide export system permease LptF/LptG RG48_RS22805 PF03739 Lipopolysaccharide export system permease LptF/LptG RG48_RS22810 PF00883 Cytosol aminopeptidase family, catalytic domain RG48_RS22810 PF02789 Cytosol aminopeptidase family, N-terminal domain RG48_RS22815 PF04364 DNA polymerase III chi subunit, HolC RG48_RS22820 PF10458 Valyl tRNA synthetase tRNA binding arm RG48_RS22820 PF00133 tRNA synthetases class I (I, L, M and V) RG48_RS22820 PF08264 Anticodon-binding domain of tRNA RG48_RS22825 PF05987 Bacterial protein of unknown function (DUF898) RG48_RS22830 PF00583 Acetyltransferase (GNAT) family RG48_RS22835 PF06877 Regulator of ribonuclease activity B RG48_RS22840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RG48_RS22840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RG48_RS22850 PF04074 YhcH/YjgK/YiaL RG48_RS22855 PF00440 Bacterial regulatory proteins, tetR family RG48_RS22865 PF01042 Endoribonuclease L-PSP RG48_RS22875 PF08052 PyrBI operon leader peptide RG48_RS22880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RG48_RS22880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RG48_RS22885 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain RG48_RS22885 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain RG48_RS22890 PF01042 Endoribonuclease L-PSP RG48_RS22900 PF00689 Cation transporting ATPase, C-terminus RG48_RS22900 PF00690 Cation transporter/ATPase, N-terminus RG48_RS22905 PF00356 Bacterial regulatory proteins, lacI family RG48_RS22910 PF00367 phosphotransferase system, EIIB RG48_RS22910 PF02378 Phosphotransferase system, EIIC RG48_RS22915 PF11941 Domain of unknown function (DUF3459) RG48_RS22915 PF00128 Alpha amylase, catalytic domain RG48_RS22920 PF13597 Anaerobic ribonucleoside-triphosphate reductase RG48_RS22920 PF03477 ATP cone domain RG48_RS22935 PF07361 Cytochrome b562 RG48_RS22940 PF01523 Putative modulator of DNA gyrase RG48_RS22945 PF04751 Protein of unknown function (DUF615) RG48_RS22950 PF01225 Mur ligase family, catalytic domain RG48_RS22950 PF02875 Mur ligase family, glutamate ligase domain RG48_RS22950 PF08245 Mur ligase middle domain RG48_RS22955 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RG48_RS22960 PF02653 Branched-chain amino acid transport system / permease component RG48_RS22965 PF02653 Branched-chain amino acid transport system / permease component RG48_RS22970 PF00005 ABC transporter RG48_RS22975 PF13407 Periplasmic binding protein domain RG48_RS22980 PF00719 Inorganic pyrophosphatase RG48_RS22985 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like RG48_RS22990 PF04357 TamB, inner membrane protein subunit of TAM complex RG48_RS22995 PF01103 Surface antigen RG48_RS22995 PF07244 Surface antigen variable number repeat RG48_RS22995 PF17243 POTRA domain TamA domain 1 RG48_RS23005 PF01625 Peptide methionine sulfoxide reductase RG48_RS23010 PF00571 CBS domain RG48_RS23010 PF01595 Cyclin M transmembrane N-terminal domain RG48_RS23010 PF03471 Transporter associated domain RG48_RS23015 PF06526 Protein of unknown function (DUF1107) RG48_RS23020 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) RG48_RS23025 PF00459 Inositol monophosphatase family RG48_RS23030 PF00149 Calcineurin-like phosphoesterase RG48_RS23030 PF02872 5'-nucleotidase, C-terminal domain RG48_RS23035 PF01638 HxlR-like helix-turn-helix RG48_RS23040 PF05368 NmrA-like family RG48_RS23045 PF00892 EamA-like transporter family RG48_RS23050 PF04405 Domain of Unknown function (DUF542) RG48_RS23050 PF01814 Hemerythrin HHE cation binding domain RG48_RS23055 PF00324 Amino acid permease RG48_RS23060 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RG48_RS23060 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RG48_RS23070 PF08525 Opacity-associated protein A N-terminal motif RG48_RS23070 PF04225 Opacity-associated protein A LysM-like domain RG48_RS23075 PF17938 Tetracyclin repressor-like, C-terminal domain RG48_RS23080 PF07282 Putative transposase DNA-binding domain RG48_RS23080 PF12323 Helix-turn-helix domain RG48_RS23080 PF01385 Probable transposase RG48_RS23085 PF01797 Transposase IS200 like RG48_RS23090 PF10887 Protein of unknown function (DUF2686) RG48_RS23095 PF01281 Ribosomal protein L9, N-terminal domain RG48_RS23095 PF03948 Ribosomal protein L9, C-terminal domain RG48_RS23100 PF01084 Ribosomal protein S18 RG48_RS23105 PF00436 Single-strand binding protein family RG48_RS23110 PF01250 Ribosomal protein S6 RG48_RS23115 PF07338 Protein of unknown function (DUF1471) RG48_RS23120 PF07274 Protein of unknown function (DUF1440) RG48_RS23125 PF00596 Class II Aldolase and Adducin N-terminal domain RG48_RS23130 PF01261 Xylose isomerase-like TIM barrel RG48_RS23135 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RG48_RS23140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS23145 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS23150 PF03611 PTS system sugar-specific permease component RG48_RS23160 PF00455 DeoR C terminal sensor domain RG48_RS23160 PF08220 DeoR-like helix-turn-helix domain RG48_RS23165 PF00326 Prolyl oligopeptidase family RG48_RS23170 PF07338 Protein of unknown function (DUF1471) RG48_RS23175 PF07338 Protein of unknown function (DUF1471) RG48_RS23180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RG48_RS23180 PF18158 Adaptive response protein AidB N-terminal domain RG48_RS23180 PF02770 Acyl-CoA dehydrogenase, middle domain RG48_RS23185 PF03738 Glutathionylspermidine synthase preATP-grasp RG48_RS23190 PF06693 Protein of unknown function (DUF1190) RG48_RS23195 PF03994 Domain of Unknown Function (DUF350) RG48_RS23200 PF10679 Protein of unknown function (DUF2491) RG48_RS23205 PF04012 PspA/IM30 family RG48_RS23210 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) RG48_RS23220 PF07690 Major Facilitator Superfamily RG48_RS23225 PF00701 Dihydrodipicolinate synthetase family RG48_RS23230 PF09339 IclR helix-turn-helix domain RG48_RS23230 PF01614 Bacterial transcriptional regulator RG48_RS23235 PF00588 SpoU rRNA Methylase family RG48_RS23235 PF08032 RNA 2'-O ribose methyltransferase substrate binding RG48_RS23240 PF00575 S1 RNA binding domain RG48_RS23240 PF00773 RNB domain RG48_RS23240 PF08206 Ribonuclease B OB domain RG48_RS23240 PF08461 Ribonuclease R winged-helix domain RG48_RS23240 PF17876 Cold shock domain RG48_RS23245 PF02082 Transcriptional regulator RG48_RS23250 PF00709 Adenylosuccinate synthetase RG48_RS23255 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) RG48_RS23260 PF01145 SPFH domain / Band 7 family RG48_RS23265 PF01145 SPFH domain / Band 7 family RG48_RS23265 PF12221 Bacterial membrane protein N terminal RG48_RS23270 PF01926 50S ribosome-binding GTPase RG48_RS23270 PF13167 GTP-binding GTPase N-terminal RG48_RS23270 PF16360 GTP-binding GTPase Middle Region RG48_RS23275 PF17209 Hfq protein RG48_RS23285 PF08676 MutL C terminal dimerisation domain RG48_RS23285 PF01119 DNA mismatch repair protein, C-terminal domain RG48_RS23290 PF01520 N-acetylmuramoyl-L-alanine amidase RG48_RS23295 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RG48_RS23300 PF03853 YjeF-related protein N-terminus RG48_RS23300 PF01256 Carbohydrate kinase RG48_RS23305 PF08331 Domain of unknown function (DUF1730) RG48_RS23325 PF00929 Exonuclease RG48_RS23330 PF03193 RsgA GTPase RG48_RS23335 PF02666 Phosphatidylserine decarboxylase RG48_RS23340 PF12795 Mechanosensitive ion channel porin domain RG48_RS23340 PF00924 Mechanosensitive ion channel RG48_RS23340 PF12794 Mechanosensitive ion channel inner membrane domain 1 RG48_RS23345 PF10840 Protein of unknown function (DUF2645) RG48_RS23355 PF13520 Amino acid permease RG48_RS23360 PF00152 tRNA synthetases class II (D, K and N) RG48_RS23365 PF02910 Fumarate reductase flavoprotein C-term RG48_RS23365 PF00890 FAD binding domain RG48_RS23370 PF13183 4Fe-4S dicluster domain RG48_RS23370 PF13085 2Fe-2S iron-sulfur cluster binding domain RG48_RS23375 PF02300 Fumarate reductase subunit C RG48_RS23380 PF02313 Fumarate reductase subunit D RG48_RS23385 PF00144 Beta-lactamase RG48_RS23390 PF08212 Lipocalin-like domain RG48_RS23395 PF00893 Small Multidrug Resistance protein RG48_RS23400 PF08085 Entericidin EcnA/B family RG48_RS23405 PF08085 Entericidin EcnA/B family RG48_RS23410 PF09285 Elongation factor P, C-terminal RG48_RS23410 PF08207 Elongation factor P (EF-P) KOW-like domain RG48_RS23410 PF01132 Elongation factor P (EF-P) OB domain RG48_RS23415 PF04055 Radical SAM superfamily RG48_RS23420 PF15922 YjeJ-like RG48_RS23425 PF13698 Domain of unknown function (DUF4156) RG48_RS23430 PF00118 TCP-1/cpn60 chaperonin family RG48_RS23435 PF00166 Chaperonin 10 Kd subunit RG48_RS23440 PF13520 Amino acid permease RG48_RS23445 PF04186 FxsA cytoplasmic membrane protein RG48_RS23455 PF00206 Lyase RG48_RS23455 PF10415 Fumarase C C-terminus RG48_RS23460 PF03605 Anaerobic c4-dicarboxylate membrane transporter RG48_RS23465 PF03091 CutA1 divalent ion tolerance protein RG48_RS23470 PF11412 Disulphide bond corrector protein DsbC RG48_RS23470 PF02683 Cytochrome C biogenesis protein transmembrane region RG48_RS23490 PF18500 CadC C-terminal domain 1 RG48_RS23490 PF00486 Transcriptional regulatory protein, C terminal RG48_RS23500 PF13520 Amino acid permease RG48_RS23505 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RG48_RS23505 PF01276 Orn/Lys/Arg decarboxylase, major domain RG48_RS23505 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RG48_RS23510 PF00854 POT family RG48_RS23515 PF00152 tRNA synthetases class II (D, K and N) RG48_RS23515 PF01336 OB-fold nucleic acid binding domain RG48_RS23520 PF10753 Toxin GhoT_OrtT RG48_RS23525 PF11080 Endoribonuclease GhoS RG48_RS23535 PF14542 GCN5-related N-acetyl-transferase RG48_RS23540 PF06902 Divergent 4Fe-4S mono-cluster RG48_RS23545 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RG48_RS23545 PF17203 Single cache domain 3 RG48_RS23545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS23545 PF00989 PAS fold RG48_RS23550 PF00072 Response regulator receiver domain RG48_RS23560 PF03605 Anaerobic c4-dicarboxylate membrane transporter RG48_RS23565 PF05683 Fumarase C-terminus RG48_RS23565 PF05681 Fumarate hydratase (Fumerase) RG48_RS23570 PF09997 Predicted membrane protein (DUF2238) RG48_RS23580 PF02056 Family 4 glycosyl hydrolase RG48_RS23580 PF11975 Family 4 glycosyl hydrolase C-terminal domain RG48_RS23590 PF12833 Helix-turn-helix domain RG48_RS23595 PF01276 Orn/Lys/Arg decarboxylase, major domain RG48_RS23595 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RG48_RS23595 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RG48_RS23600 PF12833 Helix-turn-helix domain RG48_RS23605 PF13520 Amino acid permease RG48_RS23610 PF00884 Sulfatase RG48_RS23610 PF08019 Phosphoethanolamine transferase EptA/EptB RG48_RS23615 PF00486 Transcriptional regulatory protein, C terminal RG48_RS23615 PF00072 Response regulator receiver domain RG48_RS23620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS23620 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS23630 PF08946 Osmosensory transporter coiled coil RG48_RS23630 PF00083 Sugar (and other) transporter RG48_RS23635 PF13990 YjcZ-like protein RG48_RS23640 PF00350 Dynamin family RG48_RS23650 PF08274 PhnA Zinc-Ribbon RG48_RS23650 PF03831 PhnA domain RG48_RS23655 PF06983 3-demethylubiquinone-9 3-methyltransferase RG48_RS23660 PF00005 ABC transporter RG48_RS23675 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS23680 PF07702 UTRA domain RG48_RS23680 PF00392 Bacterial regulatory proteins, gntR family RG48_RS23685 PF06754 Phosphonate metabolism protein PhnG RG48_RS23690 PF05845 Bacterial phosphonate metabolism protein (PhnH) RG48_RS23695 PF05861 Bacterial phosphonate metabolism protein (PhnI) RG48_RS23700 PF06007 Phosphonate metabolism protein PhnJ RG48_RS23705 PF00005 ABC transporter RG48_RS23710 PF00005 ABC transporter RG48_RS23715 PF07969 Amidohydrolase family RG48_RS23725 PF00583 Acetyltransferase (GNAT) family RG48_RS23730 PF12706 Beta-lactamase superfamily domain RG48_RS23740 PF02502 Ribose/Galactose Isomerase RG48_RS23745 PF14864 Alkyl sulfatase C-terminal RG48_RS23745 PF14863 Alkyl sulfatase dimerisation RG48_RS23745 PF00753 Metallo-beta-lactamase superfamily RG48_RS23750 PF17090 Uncharacterised protein family RG48_RS23755 PF00529 HlyD membrane-fusion protein of T1SS RG48_RS23755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RG48_RS23760 PF04632 Fusaric acid resistance protein family RG48_RS23765 PF02321 Outer membrane efflux protein RG48_RS23770 PF01568 Molydopterin dinucleotide binding domain RG48_RS23770 PF00384 Molybdopterin oxidoreductase RG48_RS23770 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RG48_RS23775 PF01568 Molydopterin dinucleotide binding domain RG48_RS23775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RG48_RS23775 PF00384 Molybdopterin oxidoreductase RG48_RS23780 PF08238 Sel1 repeat RG48_RS23785 PF00375 Sodium:dicarboxylate symporter family RG48_RS23800 PF03918 Cytochrome C biogenesis protein RG48_RS23805 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RG48_RS23805 PF01578 Cytochrome C assembly protein RG48_RS23810 PF03916 Polysulphide reductase, NrfD RG48_RS23815 PF00037 4Fe-4S binding domain RG48_RS23815 PF13247 4Fe-4S dicluster domain RG48_RS23820 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RG48_RS23820 PF13435 Cytochrome c554 and c-prime RG48_RS23825 PF02335 Cytochrome c552 RG48_RS23835 PF00501 AMP-binding enzyme RG48_RS23835 PF13193 AMP-binding enzyme C-terminal domain RG48_RS23835 PF16177 Acetyl-coenzyme A synthetase N-terminus RG48_RS23840 PF04341 Protein of unknown function, DUF485 RG48_RS23845 PF00474 Sodium:solute symporter family RG48_RS23855 PF00999 Sodium/hydrogen exchanger family RG48_RS23860 PF00860 Permease family RG48_RS23880 PF00376 MerR family regulatory protein RG48_RS23880 PF09278 MerR, DNA binding RG48_RS23885 PF12833 Helix-turn-helix domain RG48_RS23890 PF12792 CSS motif domain associated with EAL RG48_RS23890 PF00563 EAL domain RG48_RS23900 PF15940 Family of unknown function RG48_RS23905 PF00436 Single-strand binding protein family RG48_RS23910 PF17755 UvrA DNA-binding domain RG48_RS23910 PF00005 ABC transporter RG48_RS23910 PF17760 UvrA interaction domain RG48_RS23915 PF04237 YjbR RG48_RS23920 PF01894 Uncharacterised protein family UPF0047 RG48_RS23925 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RG48_RS23935 PF00155 Aminotransferase class I and II RG48_RS23940 PF00842 Alanine racemase, C-terminal domain RG48_RS23940 PF01168 Alanine racemase, N-terminal domain RG48_RS23945 PF03796 DnaB-like helicase C terminal domain RG48_RS23945 PF00772 DnaB-like helicase N terminal domain RG48_RS23950 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS23950 PF00107 Zinc-binding dehydrogenase RG48_RS23955 PF09583 Phage shock protein G (Phageshock_PspG) RG48_RS23960 PF01207 Dihydrouridine synthase (Dus) RG48_RS23965 PF10897 Protein of unknown function (DUF2713) RG48_RS23975 PF01475 Ferric uptake regulator family RG48_RS23980 PF05532 CsbD-like RG48_RS23985 PF01554 MatE RG48_RS23990 PF00717 Peptidase S24-like RG48_RS23990 PF01726 LexA DNA binding domain RG48_RS23995 PF01219 Prokaryotic diacylglycerol kinase RG48_RS24000 PF01553 Acyltransferase RG48_RS24010 PF01040 UbiA prenyltransferase family RG48_RS24015 PF04345 Chorismate lyase RG48_RS24025 PF13981 SopA-like central domain RG48_RS24025 PF13599 Pentapeptide repeats (9 copies) RG48_RS24035 PF07148 Maltose operon periplasmic protein precursor (MalM) RG48_RS24040 PF02264 LamB porin RG48_RS24045 PF00005 ABC transporter RG48_RS24045 PF17912 MalK OB fold domain RG48_RS24055 PF01547 Bacterial extracellular solute-binding protein RG48_RS24060 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS24060 PF14785 Maltose transport system permease protein MalF P2 domain RG48_RS24065 PF00528 Binding-protein-dependent transport system inner membrane component RG48_RS24070 PF00083 Sugar (and other) transporter RG48_RS24075 PF06146 Phosphate-starvation-inducible E RG48_RS24080 PF17089 Uncharacterised protein family RG48_RS24085 PF06082 Exopolysaccharide biosynthesis protein YbjH RG48_RS24090 PF06251 Capsule biosynthesis GfcC RG48_RS24095 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF RG48_RS24100 PF11106 Exopolysaccharide production protein YjbE RG48_RS24105 PF00342 Phosphoglucose isomerase RG48_RS24115 PF00696 Amino acid kinase family RG48_RS24115 PF01842 ACT domain RG48_RS24120 PF06414 Zeta toxin RG48_RS24125 PF10127 RNA repair pathway DNA polymerase beta family RG48_RS24135 PF11656 YjbD family (DUF3811) RG48_RS24140 PF00849 RNA pseudouridylate synthase RG48_RS24140 PF01479 S4 domain RG48_RS24145 PF03575 Peptidase family S51 RG48_RS24150 PF02690 Na+/Pi-cotransporter RG48_RS24155 PF00809 Pterin binding enzyme RG48_RS24155 PF02574 Homocysteine S-methyltransferase RG48_RS24155 PF02310 B12 binding domain RG48_RS24155 PF02607 B12 binding domain RG48_RS24155 PF02965 Vitamin B12 dependent methionine synthase, activation domain RG48_RS24160 PF01614 Bacterial transcriptional regulator RG48_RS24160 PF09339 IclR helix-turn-helix domain RG48_RS24165 PF07906 ShET2 enterotoxin, N-terminal region RG48_RS24165 PF07906 ShET2 enterotoxin, N-terminal region RG48_RS24170 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) RG48_RS24180 PF00463 Isocitrate lyase family RG48_RS24185 PF01274 Malate synthase RG48_RS24190 PF04204 Homoserine O-succinyltransferase RG48_RS24195 PF13673 Acetyltransferase (GNAT) domain RG48_RS24225 PF01808 AICARFT/IMPCHase bienzyme RG48_RS24225 PF02142 MGS-like domain RG48_RS24230 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RG48_RS24230 PF02843 Phosphoribosylglycinamide synthetase, C domain RG48_RS24230 PF02844 Phosphoribosylglycinamide synthetase, N domain RG48_RS24235 PF02954 Bacterial regulatory protein, Fis family RG48_RS24235 PF00158 Sigma-54 interaction domain RG48_RS24235 PF00072 Response regulator receiver domain RG48_RS24240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS24240 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS24250 PF13801 Heavy-metal resistance RG48_RS24255 PF07356 Protein of unknown function (DUF1481) RG48_RS24260 PF00216 Bacterial DNA-binding protein RG48_RS24265 PF04222 Protein of unknown function (DUF416) RG48_RS24270 PF04493 Endonuclease V RG48_RS24275 PF01208 Uroporphyrinogen decarboxylase (URO-D) RG48_RS24280 PF09297 NADH pyrophosphatase zinc ribbon domain RG48_RS24280 PF00293 NUDIX domain RG48_RS24285 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ RG48_RS24290 PF01964 Radical SAM ThiC family RG48_RS24290 PF13667 ThiC-associated domain RG48_RS24295 PF02581 Thiamine monophosphate synthase RG48_RS24300 PF00899 ThiF family RG48_RS24305 PF02597 ThiS family RG48_RS24310 PF05690 Thiazole biosynthesis protein ThiG RG48_RS24315 PF04055 Radical SAM superfamily RG48_RS24315 PF06968 Biotin and Thiamin Synthesis associated domain RG48_RS24325 PF00623 RNA polymerase Rpb1, domain 2 RG48_RS24325 PF04998 RNA polymerase Rpb1, domain 5 RG48_RS24325 PF05000 RNA polymerase Rpb1, domain 4 RG48_RS24325 PF04997 RNA polymerase Rpb1, domain 1 RG48_RS24325 PF04983 RNA polymerase Rpb1, domain 3 RG48_RS24330 PF04563 RNA polymerase beta subunit RG48_RS24330 PF00562 RNA polymerase Rpb2, domain 6 RG48_RS24330 PF04560 RNA polymerase Rpb2, domain 7 RG48_RS24330 PF04561 RNA polymerase Rpb2, domain 2 RG48_RS24330 PF10385 RNA polymerase beta subunit external 1 domain RG48_RS24330 PF04565 RNA polymerase Rpb2, domain 3 RG48_RS24335 PF00542 Ribosomal protein L7/L12 C-terminal domain RG48_RS24335 PF16320 Ribosomal protein L7/L12 dimerisation domain RG48_RS24340 PF00466 Ribosomal protein L10 RG48_RS24350 PF00687 Ribosomal protein L1p/L10e family RG48_RS24355 PF03946 Ribosomal protein L11, N-terminal domain RG48_RS24355 PF00298 Ribosomal protein L11, RNA binding domain RG48_RS24360 PF02357 Transcription termination factor nusG RG48_RS24360 PF00467 KOW motif RG48_RS24365 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RG48_RS24370 PF03143 Elongation factor Tu C-terminal domain RG48_RS24370 PF00009 Elongation factor Tu GTP binding domain RG48_RS24370 PF03144 Elongation factor Tu domain 2 RG48_RS24405 PF00485 Phosphoribulokinase / Uridine kinase family RG48_RS24410 PF02237 Biotin protein ligase C terminal domain RG48_RS24410 PF03099 Biotin/lipoate A/B protein ligase family RG48_RS24410 PF08279 HTH domain RG48_RS24415 PF01565 FAD binding domain RG48_RS24415 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RG48_RS24440 PF01177 Asp/Glu/Hydantoin racemase RG48_RS24445 PF07715 TonB-dependent Receptor Plug Domain RG48_RS24445 PF00593 TonB dependent receptor RG48_RS24450 PF05958 tRNA (Uracil-5-)-methyltransferase RG48_RS24455 PF07226 Protein of unknown function (DUF1422) RG48_RS24460 PF00440 Bacterial regulatory proteins, tetR family RG48_RS24465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RG48_RS24465 PF07992 Pyridine nucleotide-disulphide oxidoreductase RG48_RS24470 PF03466 LysR substrate binding domain RG48_RS24470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RG48_RS24475 PF07690 Major Facilitator Superfamily RG48_RS24480 PF13378 Enolase C-terminal domain-like RG48_RS24480 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RG48_RS24485 PF14698 Argininosuccinate lyase C-terminal RG48_RS24485 PF00206 Lyase RG48_RS24490 PF00696 Amino acid kinase family RG48_RS24495 PF02774 Semialdehyde dehydrogenase, dimerisation domain RG48_RS24495 PF01118 Semialdehyde dehydrogenase, NAD binding domain RG48_RS24500 PF07687 Peptidase dimerisation domain RG48_RS24500 PF01546 Peptidase family M20/M25/M40 RG48_RS24505 PF00311 Phosphoenolpyruvate carboxylase RG48_RS24510 PF00884 Sulfatase RG48_RS24515 PF12833 Helix-turn-helix domain RG48_RS24520 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS24525 PF04055 Radical SAM superfamily RG48_RS24530 PF02901 Pyruvate formate lyase-like RG48_RS24530 PF01228 Glycine radical RG48_RS24535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS24545 PF05524 PEP-utilising enzyme, N-terminal RG48_RS24545 PF02896 PEP-utilising enzyme, TIM barrel domain RG48_RS24545 PF00381 PTS HPr component phosphorylation site RG48_RS24545 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS24545 PF00391 PEP-utilising enzyme, mobile domain RG48_RS24550 PF00923 Transaldolase/Fructose-6-phosphate aldolase RG48_RS24555 PF00465 Iron-containing alcohol dehydrogenase RG48_RS24565 PF06940 Domain of unknown function (DUF1287) RG48_RS24570 PF00892 EamA-like transporter family RG48_RS24575 PF00141 Peroxidase RG48_RS24580 PF02219 Methylenetetrahydrofolate reductase RG48_RS24590 PF03447 Homoserine dehydrogenase, NAD binding domain RG48_RS24590 PF00696 Amino acid kinase family RG48_RS24590 PF00742 Homoserine dehydrogenase RG48_RS24595 PF01053 Cys/Met metabolism PLP-dependent enzyme RG48_RS24600 PF01340 Met Apo-repressor, MetJ RG48_RS24605 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family RG48_RS24615 PF12759 InsA C-terminal domain RG48_RS24615 PF03811 InsA N-terminal domain RG48_RS24620 PF03400 IS1 transposase RG48_RS24625 PF03400 IS1 transposase RG48_RS24635 PF14220 Domain of unknown function (DUF4329) RG48_RS24635 PF03527 RHS protein RG48_RS24635 PF05593 RHS Repeat RG48_RS24640 PF01197 Ribosomal protein L31 RG48_RS24645 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RG48_RS24645 PF17764 3′ DNA-binding domain (3′BD) RG48_RS24645 PF00271 Helicase conserved C-terminal domain RG48_RS24645 PF00270 DEAD/DEAH box helicase RG48_RS24645 PF18074 Primosomal protein N C-terminal domain RG48_RS24650 PF00356 Bacterial regulatory proteins, lacI family RG48_RS24655 PF05036 Sporulation related domain RG48_RS24660 PF00227 Proteasome subunit RG48_RS24665 PF10431 C-terminal, D2-small domain, of ClpB protein RG48_RS24665 PF00004 ATPase family associated with various cellular activities (AAA) RG48_RS24665 PF07724 AAA domain (Cdc48 subfamily) RG48_RS24670 PF01040 UbiA prenyltransferase family RG48_RS24675 PF03737 Aldolase/RraA RG48_RS24680 PF06005 Cell division protein ZapB RG48_RS24685 PF00230 Major intrinsic protein RG48_RS24690 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RG48_RS24690 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RG48_RS24695 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RG48_RS24700 PF00175 Oxidoreductase NAD-binding domain RG48_RS24700 PF00970 Oxidoreductase FAD-binding domain RG48_RS24705 PF00582 Universal stress protein family RG48_RS24710 PF04175 Protein of unknown function (DUF406) RG48_RS24715 PF05656 Protein of unknown function (DUF805) RG48_RS24720 PF07305 Protein of unknown function (DUF1454) RG48_RS24730 PF00121 Triosephosphate isomerase RG48_RS24735 PF02611 CDP-diacylglycerol pyrophosphatase RG48_RS24745 PF00365 Phosphofructokinase RG48_RS24750 PF01545 Cation efflux family RG48_RS24750 PF16916 Dimerisation domain of Zinc Transporter RG48_RS24755 PF07813 LTXXQ motif family protein RG48_RS24760 PF00486 Transcriptional regulatory protein, C terminal RG48_RS24760 PF00072 Response regulator receiver domain RG48_RS24765 PF00672 HAMP domain RG48_RS24765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS24765 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS24765 PF16527 Two-component sensor protein CpxA, periplasmic domain RG48_RS24770 PF03475 3-alpha domain RG48_RS24770 PF03473 MOSC domain RG48_RS24775 PF03812 2-keto-3-deoxygluconate permease RG48_RS24790 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RG48_RS24790 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RG48_RS24795 PF06379 L-rhamnose-proton symport protein (RhaT) RG48_RS24800 PF02311 AraC-like ligand binding domain RG48_RS24800 PF12833 Helix-turn-helix domain RG48_RS24805 PF12833 Helix-turn-helix domain RG48_RS24805 PF02311 AraC-like ligand binding domain RG48_RS24815 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RG48_RS24815 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RG48_RS24820 PF06134 L-rhamnose isomerase (RhaA) RG48_RS24825 PF00596 Class II Aldolase and Adducin N-terminal domain RG48_RS24830 PF05336 L-rhamnose mutarotase RG48_RS24835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS24840 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RG48_RS24840 PF02378 Phosphotransferase system, EIIC RG48_RS24845 PF05343 M42 glutamyl aminopeptidase RG48_RS24850 PF08279 HTH domain RG48_RS24850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RG48_RS24855 PF12889 Protein of unknown function (DUF3829) RG48_RS24860 PF02634 FdhD/NarQ family RG48_RS24870 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RG48_RS24870 PF01568 Molydopterin dinucleotide binding domain RG48_RS24870 PF00384 Molybdopterin oxidoreductase RG48_RS24875 PF00384 Molybdopterin oxidoreductase RG48_RS24875 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RG48_RS24875 PF01568 Molydopterin dinucleotide binding domain RG48_RS24880 PF13247 4Fe-4S dicluster domain RG48_RS24880 PF09163 Formate dehydrogenase N, transmembrane RG48_RS24885 PF01292 Prokaryotic cytochrome b561 RG48_RS24890 PF04216 Protein involved in formate dehydrogenase formation RG48_RS24905 PF01402 Ribbon-helix-helix protein, copG family RG48_RS24910 PF00583 Acetyltransferase (GNAT) family RG48_RS24910 PF09500 Putative thioesterase (yiiD_Cterm) RG48_RS24915 PF02580 D-Tyr-tRNA(Tyr) deacylase RG48_RS24920 PF03631 Virulence factor BrkB RG48_RS24925 PF13419 Haloacid dehalogenase-like hydrolase RG48_RS24935 PF07690 Major Facilitator Superfamily RG48_RS24935 PF00083 Sugar (and other) transporter RG48_RS24945 PF08240 Alcohol dehydrogenase GroES-like domain RG48_RS24945 PF00107 Zinc-binding dehydrogenase RG48_RS24950 PF01791 DeoC/LacD family aldolase RG48_RS24955 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RG48_RS24955 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RG48_RS24960 PF00294 pfkB family carbohydrate kinase RG48_RS24965 PF00455 DeoR C terminal sensor domain RG48_RS24965 PF08220 DeoR-like helix-turn-helix domain RG48_RS24970 PF07690 Major Facilitator Superfamily RG48_RS24975 PF01261 Xylose isomerase-like TIM barrel RG48_RS24980 PF00392 Bacterial regulatory proteins, gntR family RG48_RS24980 PF07702 UTRA domain RG48_RS24985 PF00009 Elongation factor Tu GTP binding domain RG48_RS24985 PF03144 Elongation factor Tu domain 2 RG48_RS24985 PF00679 Elongation factor G C-terminus RG48_RS24995 PF00120 Glutamine synthetase, catalytic domain RG48_RS24995 PF03951 Glutamine synthetase, beta-Grasp domain RG48_RS25000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RG48_RS25000 PF00989 PAS fold RG48_RS25000 PF00512 His Kinase A (phospho-acceptor) domain RG48_RS25005 PF00072 Response regulator receiver domain RG48_RS25005 PF02954 Bacterial regulatory protein, Fis family RG48_RS25005 PF00158 Sigma-54 interaction domain RG48_RS25015 PF04055 Radical SAM superfamily RG48_RS25015 PF06969 HemN C-terminal domain RG48_RS25020 PF04220 Der GTPase activator (YihI) RG48_RS25030 PF01926 50S ribosome-binding GTPase RG48_RS25035 PF01367 5'-3' exonuclease, C-terminal SAM fold RG48_RS25035 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RG48_RS25035 PF00476 DNA polymerase family A RG48_RS25035 PF01612 3'-5' exonuclease RG48_RS25045 PF01553 Acyltransferase RG48_RS25050 PF06097 Bacterial protein of unknown function (DUF945) RG48_RS25055 PF01323 DSBA-like thioredoxin domain RG48_RS25060 PF01636 Phosphotransferase enzyme family RG48_RS25065 PF06288 Protein of unknown function (DUF1040) RG48_RS25070 PF12804 MobA-like NTP transferase domain RG48_RS25075 PF03205 Molybdopterin guanine dinucleotide synthesis protein B