locus-tag	class	description
DKQ63_RS00010	COG0592	DNA-directed DNA polymerase activity
DKQ63_RS00020	COG0187	DNA topoisomerase II activity
DKQ63_RS00030	COG0561	phosphatase activity
DKQ63_RS00040	COG2186	Transcriptional regulator
DKQ63_RS00045	COG3734	2-keto-3-deoxy-galactonokinase
DKQ63_RS00050	COG0800	Aldolase
DKQ63_RS00060	COG2271	Major facilitator Superfamily
DKQ63_RS00070	COG0823	Involved in the tonB-independent uptake of proteins
DKQ63_RS00075	COG5645	(Lipo)protein
DKQ63_RS00095	COG2188	Transcriptional regulator
DKQ63_RS00110	COG2207	Transcriptional regulator
DKQ63_RS00130	COG4146	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DKQ63_RS00135	COG3119	arylsulfatase activity
DKQ63_RS00145	COG2149	membrane
DKQ63_RS00155	COG0641	radical SAM
DKQ63_RS00160	COG2814	Major facilitator Superfamily
DKQ63_RS00195	COG0028	Belongs to the TPP enzyme family
DKQ63_RS00200	COG0440	acetolactate synthase activity
DKQ63_RS00205	COG2197	response regulator
DKQ63_RS00210	COG3851	Histidine kinase
DKQ63_RS00215	COG2271	Major facilitator Superfamily
DKQ63_RS00220	COG2271	Major facilitator Superfamily
DKQ63_RS00230	COG2252	PERMEase
DKQ63_RS00260	COG1464	Belongs to the NlpA lipoprotein family
DKQ63_RS00265	COG0697	spore germination
DKQ63_RS00300	COG0582	viral genome integration into host DNA
DKQ63_RS00330	COG1501	Belongs to the glycosyl hydrolase 31 family
DKQ63_RS00335	COG2982	Protein involved in outer membrane biogenesis
DKQ63_RS00340	COG2233	PERMEase
DKQ63_RS00345	COG0786	glutamate:sodium symporter activity
DKQ63_RS00350	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DKQ63_RS00355	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DKQ63_RS00360	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DKQ63_RS00370	COG0194	GDP metabolic process
DKQ63_RS00380	COG2860	membrane
DKQ63_RS00385	COG3645	SOS response
DKQ63_RS00390	COG1561	YicC-like family, N-terminal region
DKQ63_RS00420	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DKQ63_RS00450	COG1519	Transferase
DKQ63_RS00455	COG0859	PFAM glycosyl transferase family 9
DKQ63_RS00460	COG0438	transferase activity, transferring glycosyl groups
DKQ63_RS00465	COG0515	serine threonine protein kinase
DKQ63_RS00475	COG3642	lipopolysaccharide core region biosynthetic process
DKQ63_RS00495	COG0859	PFAM glycosyl transferase family 9
DKQ63_RS00500	COG0859	PFAM glycosyl transferase family 9
DKQ63_RS00515	COG0156	8-amino-7-oxononanoate synthase activity
DKQ63_RS00525	COG1216	Glycosyl transferase, family 2
DKQ63_RS00530	COG2861	carbohydrate metabolic process
DKQ63_RS00535	COG4942	peptidase
DKQ63_RS00540	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DKQ63_RS00550	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DKQ63_RS00555	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DKQ63_RS00570	COG1045	serine acetyltransferase
DKQ63_RS00575	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
DKQ63_RS00585	COG2186	Transcriptional regulator
DKQ63_RS00590	COG1620	l-lactate permease
DKQ63_RS00610	COG3722	fumarate hydratase activity
DKQ63_RS00620	COG2213	PTS system mannitol-specific
DKQ63_RS00620	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS00630	COG1566	PFAM secretion protein HlyD family protein
DKQ63_RS00650	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
DKQ63_RS00655	COG3209	COG3209 Rhs family protein
DKQ63_RS00660	COG0625	glutathione transferase activity
DKQ63_RS00670	COG3276	selenocysteine insertion sequence binding
DKQ63_RS00695	COG1414	Transcriptional regulator
DKQ63_RS00700	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS00705	COG3977	Valine--pyruvate aminotransferase
DKQ63_RS00710	COG0366	Alpha amylase catalytic
DKQ63_RS00715	COG2992	FlgJ-related protein
DKQ63_RS00720	COG2207	Transcriptional regulator
DKQ63_RS00720	COG1609	Transcriptional regulator
DKQ63_RS00725	COG4214	carbohydrate transport
DKQ63_RS00730	COG1129	ABC transporter
DKQ63_RS00735	COG4213	ABC transporter substrate-binding protein
DKQ63_RS00745	COG1070	Carbohydrate kinase
DKQ63_RS00750	COG4682	membrane
DKQ63_RS00755	COG4682	membrane
DKQ63_RS00760	COG3274	enterobacterial common antigen metabolic process
DKQ63_RS00790	COG1278	Cold shock
DKQ63_RS00795	COG2944	sequence-specific DNA binding
DKQ63_RS00810	COG2885	chlorophyll binding
DKQ63_RS00815	COG0243	molybdopterin cofactor binding
DKQ63_RS00820	COG0456	acetyltransferase
DKQ63_RS00825	COG2818	Glycosylase
DKQ63_RS00830	COG5571	outer membrane autotransporter
DKQ63_RS00840	COG2223	nitrite transmembrane transporter activity
DKQ63_RS00845	COG2194	sulfuric ester hydrolase activity
DKQ63_RS00860	COG0747	negative chemotaxis
DKQ63_RS00865	COG0601	transmembrane transport
DKQ63_RS00870	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DKQ63_RS00875	COG0444	Belongs to the ABC transporter superfamily
DKQ63_RS00880	COG4608	Belongs to the ABC transporter superfamily
DKQ63_RS00885	COG0814	amino acid
DKQ63_RS00905	COG2194	sulfuric ester hydrolase activity
DKQ63_RS00930	COG1215	transferase activity, transferring glycosyl groups
DKQ63_RS00935	COG1215	transferase activity, transferring glycosyl groups
DKQ63_RS00940	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
DKQ63_RS00945	COG0457	Tetratricopeptide repeat
DKQ63_RS00945	COG3118	belongs to the thioredoxin family
DKQ63_RS00950	COG2200	EAL domain
DKQ63_RS00950	COG2199	diguanylate cyclase activity
DKQ63_RS00965	COG0612	Peptidase, M16
DKQ63_RS00970	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKQ63_RS00980	COG2200	EAL domain
DKQ63_RS00985	COG2982	Protein involved in outer membrane biogenesis
DKQ63_RS00990	COG0477	Major facilitator Superfamily
DKQ63_RS00995	COG1295	ribonuclease BN
DKQ63_RS01000	COG0583	DNA-binding transcription factor activity
DKQ63_RS01005	COG2197	response regulator
DKQ63_RS01015	COG1858	cytochrome C peroxidase
DKQ63_RS01020	COG0076	glutamate decarboxylase activity
DKQ63_RS01025	COG2207	Transcriptional regulator
DKQ63_RS01030	COG2207	Transcriptional regulator
DKQ63_RS01040	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DKQ63_RS01045	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKQ63_RS01055	COG2771	luxR family
DKQ63_RS01060	COG3247	response to pH
DKQ63_RS01075	COG1285	pathogenesis
DKQ63_RS01080	COG2197	response regulator
DKQ63_RS01090	COG3065	identical protein binding
DKQ63_RS01110	COG1393	Belongs to the ArsC family
DKQ63_RS01115	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
DKQ63_RS01120	COG0640	Transcriptional regulator
DKQ63_RS01135	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DKQ63_RS01140	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DKQ63_RS01145	COG0339	signal peptide processing
DKQ63_RS01155	COG3104	oligopeptide transport
DKQ63_RS01170	COG0589	response to stress
DKQ63_RS01180	COG0306	phosphate transporter
DKQ63_RS01185	COG2081	HI0933 family
DKQ63_RS01210	COG3039	Transposase
DKQ63_RS01225	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKQ63_RS01230	COG0842	Transport permease protein
DKQ63_RS01230	COG1129	ABC transporter
DKQ63_RS01235	COG0842	Transport permease protein
DKQ63_RS01245	COG1413	lyase activity
DKQ63_RS01255	COG3209	COG3209 Rhs family protein
DKQ63_RS01265	COG1124	(ABC) transporter
DKQ63_RS01270	COG0444	Belongs to the ABC transporter superfamily
DKQ63_RS01275	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DKQ63_RS01280	COG0601	transmembrane transport
DKQ63_RS01285	COG0747	negative chemotaxis
DKQ63_RS01290	COG2091	lysine biosynthetic process via aminoadipic acid
DKQ63_RS01295	COG0628	permease
DKQ63_RS01300	COG0477	Major facilitator Superfamily
DKQ63_RS01310	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
DKQ63_RS01325	COG3714	YhhN family
DKQ63_RS01335	COG3776	membrane
DKQ63_RS01340	COG0742	ribosomal rna small subunit methyltransferase
DKQ63_RS01345	COG0552	protein localization to endoplasmic reticulum
DKQ63_RS01350	COG2884	Cell division ATP-binding protein ftsE
DKQ63_RS01355	COG2177	Part of the ABC transporter FtsEX involved in
DKQ63_RS01360	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DKQ63_RS01365	COG0683	leucine binding
DKQ63_RS01370	COG0456	acetyltransferase
DKQ63_RS01375	COG0683	leucine binding
DKQ63_RS01380	COG0559	Belongs to the binding-protein-dependent transport system permease family
DKQ63_RS01385	COG4177	L-phenylalanine transmembrane transporter activity
DKQ63_RS01390	COG0411	ABC transporter
DKQ63_RS01395	COG0410	ABC transporter
DKQ63_RS01400	COG1653	transport
DKQ63_RS01405	COG1175	transmembrane transport
DKQ63_RS01410	COG0395	ABC-type sugar transport system, permease component
DKQ63_RS01420	COG0584	glycerophosphoryl diester phosphodiesterase
DKQ63_RS01430	COG0405	Gamma-glutamyltransferase
DKQ63_RS01450	COG3157	Type VI secretion system effector, Hcp
DKQ63_RS01455	COG1247	-acetyltransferase
DKQ63_RS01465	COG0673	inositol 2-dehydrogenase activity
DKQ63_RS01470	COG1741	Belongs to the pirin family
DKQ63_RS01475	COG1609	Transcriptional regulator
DKQ63_RS01480	COG3265	gluconokinase activity
DKQ63_RS01485	COG2610	gluconate transmembrane transporter activity
DKQ63_RS01490	COG2095	MarC family integral membrane protein
DKQ63_RS01495	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DKQ63_RS01520	COG0058	SHG alpha-glucan phosphorylase activity
DKQ63_RS01530	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DKQ63_RS01535	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DKQ63_RS01550	COG1349	DNA-binding transcription factor activity
DKQ63_RS01555	COG4650	regulator
DKQ63_RS01560	COG1690	Belongs to the RtcB family
DKQ63_RS01575	COG0058	SHG alpha-glucan phosphorylase activity
DKQ63_RS01580	COG1640	4-alpha-glucanotransferase
DKQ63_RS01585	COG2610	gluconate transmembrane transporter activity
DKQ63_RS01595	COG1040	competence protein
DKQ63_RS01605	COG5464	transposase or invertase
DKQ63_RS01620	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
DKQ63_RS01625	COG1918	ferrous iron import across plasma membrane
DKQ63_RS01635	COG2183	response to ionizing radiation
DKQ63_RS01640	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DKQ63_RS01670	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
DKQ63_RS01680	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DKQ63_RS01685	COG1011	Hydrolase
DKQ63_RS01695	COG0494	nUDIX hydrolase
DKQ63_RS01700	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
DKQ63_RS01705	COG4972	Pilus assembly protein
DKQ63_RS01710	COG3166	PFAM Fimbrial assembly family protein
DKQ63_RS01725	COG4796	Type ii and iii secretion system protein
DKQ63_RS01745	COG3266	domain, Protein
DKQ63_RS01750	COG0338	D12 class N6 adenine-specific DNA methyltransferase
DKQ63_RS01755	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DKQ63_RS01760	COG0546	phosphoglycolate phosphatase activity
DKQ63_RS01765	COG0180	Tryptophanyl-tRNA synthetase
DKQ63_RS01775	COG2188	Transcriptional regulator
DKQ63_RS01785	COG3457	Alanine racemase
DKQ63_RS01790	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
DKQ63_RS01795	COG1735	metal-dependent hydrolase with the TIM-barrel fold
DKQ63_RS01810	COG0626	cystathionine gamma-synthase activity
DKQ63_RS01815	COG2188	Transcriptional regulator
DKQ63_RS01820	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKQ63_RS01825	COG1082	Xylose isomerase domain protein TIM barrel
DKQ63_RS01835	COG2222	sugar isomerase
DKQ63_RS01870	COG2116	formate transmembrane transporter activity
DKQ63_RS01875	COG2146	nitrite reductase [NAD(P)H] activity
DKQ63_RS01880	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DKQ63_RS01890	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DKQ63_RS01900	COG2184	nucleotidyltransferase activity
DKQ63_RS01905	COG0512	Glutamine amidotransferase of anthranilate synthase
DKQ63_RS01910	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DKQ63_RS01915	COG1289	transmembrane transporter activity
DKQ63_RS01920	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DKQ63_RS01930	COG1765	OsmC-like protein
DKQ63_RS01935	COG3954	Phosphoribulokinase
DKQ63_RS01945	COG0429	hydrolase of the alpha beta-hydrolase fold
DKQ63_RS01950	COG0488	(ABC) transporter
DKQ63_RS01970	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
DKQ63_RS01975	COG1047	Peptidyl-prolyl cis-trans
DKQ63_RS01985	COG0545	Peptidyl-prolyl cis-trans isomerase
DKQ63_RS01990	COG2964	Protein conserved in bacteria
DKQ63_RS02035	COG3979	chitinase
DKQ63_RS02040	COG2906	2 iron, 2 sulfur cluster binding
DKQ63_RS02045	COG2193	ferroxidase activity
DKQ63_RS02050	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
DKQ63_RS02055	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
DKQ63_RS02060	COG3297	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
DKQ63_RS02065	COG3156	type II secretion system protein K
DKQ63_RS02070	COG4795	General secretion pathway protein
DKQ63_RS02075	COG2165	general secretion pathway protein
DKQ63_RS02080	COG2165	general secretion pathway protein
DKQ63_RS02085	COG2165	general secretion pathway protein
DKQ63_RS02090	COG1459	type II secretion system
DKQ63_RS02095	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DKQ63_RS02100	COG1450	Type ii and iii secretion system protein
DKQ63_RS02105	COG3031	protein transport across the cell outer membrane
DKQ63_RS02110	COG3409	Peptidoglycan-binding domain 1 protein
DKQ63_RS02110	COG3267	Type II secretory pathway component ExeA
DKQ63_RS02135	COG0089	rRNA binding
DKQ63_RS02225	COG0201	protein transport
DKQ63_RS02265	COG0789	Transcriptional regulator
DKQ63_RS02270	COG3036	rescue of stalled ribosome
DKQ63_RS02280	COG0569	domain protein
DKQ63_RS02300	COG0758	DNA mediated transformation
DKQ63_RS02310	COG0551	DNA topoisomerase type I activity
DKQ63_RS02330	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DKQ63_RS02370	COG1126	abc transporter atp-binding protein
DKQ63_RS02375	COG0765	amino acid transport
DKQ63_RS02380	COG4597	amino acid ABC transporter
DKQ63_RS02385	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKQ63_RS02405	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS02415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKQ63_RS02425	COG1309	transcriptional regulator
DKQ63_RS02435	COG2189	Belongs to the N(4) N(6)-methyltransferase family
DKQ63_RS02445	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DKQ63_RS02455	COG4145	pantothenate transmembrane transporter activity
DKQ63_RS02460	COG3924	membrane
DKQ63_RS02465	COG0439	Biotin carboxylase
DKQ63_RS02470	COG0511	ligase activity, forming carbon-carbon bonds
DKQ63_RS02480	COG0604	alcohol dehydrogenase
DKQ63_RS02485	COG2199	diguanylate cyclase activity
DKQ63_RS02485	COG2200	EAL domain
DKQ63_RS02500	COG1077	Cell shape determining protein MreB Mrl
DKQ63_RS02505	COG1792	Involved in formation and maintenance of cell shape
DKQ63_RS02510	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
DKQ63_RS02520	COG1530	ribonuclease E activity
DKQ63_RS02525	COG3164	Protein of unknown function
DKQ63_RS02530	COG0312	modulator of DNA gyrase
DKQ63_RS02535	COG0583	DNA-binding transcription factor activity
DKQ63_RS02555	COG2732	(Barnase) inhibitor
DKQ63_RS02575	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DKQ63_RS02580	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DKQ63_RS02585	COG3105	Protein conserved in bacteria
DKQ63_RS02590	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DKQ63_RS02610	COG0625	glutathione transferase activity
DKQ63_RS02615	COG2969	positive regulation of protein catabolic process
DKQ63_RS02620	COG3069	C4-dicarboxylate transmembrane transporter activity
DKQ63_RS02655	COG2731	YhcH YjgK YiaL family protein
DKQ63_RS02660	COG4804	nuclease activity
DKQ63_RS02665	COG3539	Fimbrial protein
DKQ63_RS02675	COG3188	usher protein
DKQ63_RS02680	COG3121	Chaperone
DKQ63_RS02685	COG3539	Fimbrial protein
DKQ63_RS02695	COG0493	'glutamate synthase
DKQ63_RS02700	COG0069	glutamate synthase activity
DKQ63_RS02700	COG0070	glutamate synthase
DKQ63_RS02700	COG0067	glutamate synthase
DKQ63_RS02715	COG1242	4 iron, 4 sulfur cluster binding
DKQ63_RS02720	COG0784	Response regulator, receiver
DKQ63_RS02720	COG2198	Histidine kinase
DKQ63_RS02720	COG5002	protein histidine kinase activity
DKQ63_RS02725	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
DKQ63_RS02735	COG0515	serine threonine protein kinase
DKQ63_RS02740	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS02755	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
DKQ63_RS02760	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DKQ63_RS02765	COG1137	ATPase activity
DKQ63_RS02770	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DKQ63_RS02775	COG3117	lipopolysaccharide transmembrane transporter activity
DKQ63_RS02780	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
DKQ63_RS02785	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
DKQ63_RS02785	COG0517	IMP dehydrogenase activity
DKQ63_RS02790	COG0530	calcium, potassium:sodium antiporter activity
DKQ63_RS02795	COG1127	ABC transporter
DKQ63_RS02800	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DKQ63_RS02805	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DKQ63_RS02810	COG2854	intermembrane phospholipid transfer
DKQ63_RS02815	COG3113	response to antibiotic
DKQ63_RS02820	COG5007	Belongs to the BolA IbaG family
DKQ63_RS02830	COG3423	Transcriptional regulator
DKQ63_RS02835	COG0142	geranyltranstransferase activity
DKQ63_RS02850	COG0697	spore germination
DKQ63_RS02860	COG2027	D-alanyl-D-alanine carboxypeptidase
DKQ63_RS02865	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DKQ63_RS02870	COG1534	Rna-binding protein
DKQ63_RS02880	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DKQ63_RS02885	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DKQ63_RS02895	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DKQ63_RS02905	COG2194	sulfuric ester hydrolase activity
DKQ63_RS02925	COG0195	Participates in both transcription termination and antitermination
DKQ63_RS02965	COG0513	Belongs to the DEAD box helicase family
DKQ63_RS02970	COG0814	amino acid
DKQ63_RS02975	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DKQ63_RS02980	COG0826	peptidase U32
DKQ63_RS02985	COG0826	peptidase U32
DKQ63_RS02990	COG3154	lipid carrier protein
DKQ63_RS02995	COG3153	acetyltransferase
DKQ63_RS03010	COG0693	protein deglycase activity
DKQ63_RS03015	COG0702	epimerase
DKQ63_RS03020	COG0701	Predicted permease
DKQ63_RS03025	COG2823	Periplasmic or secreted lipoprotein
DKQ63_RS03040	COG3107	peptidoglycan biosynthetic process
DKQ63_RS03045	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
DKQ63_RS03050	COG3539	Fimbrial protein
DKQ63_RS03055	COG3188	usher protein
DKQ63_RS03060	COG3121	Chaperone
DKQ63_RS03065	COG3539	Fimbrial protein
DKQ63_RS03080	COG0363	glucosamine-6-phosphate deaminase activity
DKQ63_RS03085	COG3716	PTS system mannose fructose sorbose family IID component
DKQ63_RS03090	COG3715	PTS system
DKQ63_RS03095	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKQ63_RS03105	COG2222	sugar isomerase
DKQ63_RS03110	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DKQ63_RS03115	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS03120	COG3716	PTS system mannose fructose sorbose family IID component
DKQ63_RS03130	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKQ63_RS03145	COG1349	DNA-binding transcription factor activity
DKQ63_RS03155	COG2002	toxin-antitoxin pair type II binding
DKQ63_RS03160	COG2721	sulfolactate sulfo-lyase activity
DKQ63_RS03165	COG2271	Major facilitator Superfamily
DKQ63_RS03175	COG2084	Dehydrogenase
DKQ63_RS03180	COG1929	Belongs to the glycerate kinase type-1 family
DKQ63_RS03205	COG0583	DNA-binding transcription factor activity
DKQ63_RS03215	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DKQ63_RS03225	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DKQ63_RS03230	COG1882	Formate acetyltransferase
DKQ63_RS03235	COG0251	oxidation-reduction process
DKQ63_RS03240	COG1760	l-serine dehydratase
DKQ63_RS03250	COG0814	amino acid
DKQ63_RS03265	COG1741	Belongs to the pirin family
DKQ63_RS03270	COG0583	DNA-binding transcription factor activity
DKQ63_RS03280	COG3152	Membrane
DKQ63_RS03285	COG3152	Membrane
DKQ63_RS03290	COG0435	Glutathione S-transferase
DKQ63_RS03295	COG2259	Doxx family
DKQ63_RS03305	COG5393	Putative Actinobacterial Holin-X, holin superfamily III
DKQ63_RS03310	COG4575	ribosome binding
DKQ63_RS03315	COG1422	Protein of unknown function (DUF1090)
DKQ63_RS03325	COG0586	Pfam SNARE associated Golgi protein
DKQ63_RS03330	COG2186	Transcriptional regulator
DKQ63_RS03335	COG2271	Major facilitator Superfamily
DKQ63_RS03345	COG2721	sulfolactate sulfo-lyase activity
DKQ63_RS03355	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
DKQ63_RS03360	COG0861	Integral membrane protein TerC family
DKQ63_RS03365	COG0673	inositol 2-dehydrogenase activity
DKQ63_RS03370	COG2949	membrane
DKQ63_RS03375	COG1451	nucleotide metabolic process
DKQ63_RS03390	COG4680	protein conserved in bacteria
DKQ63_RS03395	COG5499	transcription regulator containing HTH domain
DKQ63_RS03400	COG1902	pentaerythritol trinitrate reductase activity
DKQ63_RS03400	COG0446	pyridine nucleotide-disulphide oxidoreductase
DKQ63_RS03405	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
DKQ63_RS03405	COG3408	Glycogen debranching enzyme
DKQ63_RS03415	COG0531	amino acid
DKQ63_RS03420	COG2731	YhcH YjgK YiaL family protein
DKQ63_RS03425	COG3250	beta-galactosidase activity
DKQ63_RS03430	COG1609	Transcriptional regulator
DKQ63_RS03440	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DKQ63_RS03455	COG0840	transmembrane signaling receptor activity
DKQ63_RS03460	COG1695	Transcriptional regulator
DKQ63_RS03465	COG2375	cellular response to nickel ion
DKQ63_RS03480	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DKQ63_RS03490	COG0358	DNA primase activity
DKQ63_RS03495	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DKQ63_RS03510	COG0471	metal ion transport
DKQ63_RS03515	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DKQ63_RS03520	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DKQ63_RS03530	COG0583	DNA-binding transcription factor activity
DKQ63_RS03540	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DKQ63_RS03555	COG4991	sh3 domain protein
DKQ63_RS03565	COG3025	triphosphatase activity
DKQ63_RS03600	COG2268	Band 7 protein
DKQ63_RS03605	COG1585	Membrane protein implicated in regulation of membrane protease activity
DKQ63_RS03615	COG3539	Fimbrial protein
DKQ63_RS03620	COG3121	Chaperone
DKQ63_RS03625	COG3188	usher protein
DKQ63_RS03630	COG3539	Fimbrial protein
DKQ63_RS03635	COG2960	long-chain fatty acid transporting porin activity
DKQ63_RS03655	COG3384	dioxygenase
DKQ63_RS03660	COG0754	glutathionylspermidine amidase activity
DKQ63_RS03675	COG1538	Outer membrane efflux protein
DKQ63_RS03680	COG0494	nUDIX hydrolase
DKQ63_RS03685	COG3151	Protein conserved in bacteria
DKQ63_RS03690	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DKQ63_RS03695	COG3150	esterase
DKQ63_RS03700	COG0187	DNA topoisomerase II activity
DKQ63_RS03705	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
DKQ63_RS03710	COG2249	NAD(P)H dehydrogenase (quinone) activity
DKQ63_RS03725	COG0642	Histidine kinase
DKQ63_RS03730	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS03735	COG3111	PFAM Bacterial OB fold (BOF) protein
DKQ63_RS03740	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
DKQ63_RS03750	COG2944	sequence-specific DNA binding
DKQ63_RS03760	COG4166	transmembrane transport
DKQ63_RS03765	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DKQ63_RS03770	COG0204	Acyl-transferase
DKQ63_RS03775	COG2132	Multicopper oxidase
DKQ63_RS03780	COG1032	radical SAM domain protein
DKQ63_RS03785	COG4238	major outer membrane lipoprotein
DKQ63_RS03795	COG0656	L-ascorbic acid biosynthetic process
DKQ63_RS03800	COG1979	alcohol dehydrogenase
DKQ63_RS03805	COG2207	Transcriptional regulator
DKQ63_RS03810	COG0586	Pfam SNARE associated Golgi protein
DKQ63_RS03815	COG0626	cystathionine gamma-synthase activity
DKQ63_RS03825	COG0811	peptide transport
DKQ63_RS03830	COG0848	biopolymer transport protein
DKQ63_RS03835	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS03845	COG0667	Aldo Keto reductase
DKQ63_RS03865	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
DKQ63_RS03870	COG0437	4 iron, 4 sulfur cluster binding
DKQ63_RS03875	COG5557	Pfam Polysulphide reductase, NrfD
DKQ63_RS03880	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
DKQ63_RS03885	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
DKQ63_RS03890	COG1773	rubredoxin
DKQ63_RS03900	COG0298	carbon dioxide binding
DKQ63_RS03905	COG0625	glutathione transferase activity
DKQ63_RS03910	COG0754	glutathionylspermidine amidase activity
DKQ63_RS03930	COG0582	viral genome integration into host DNA
DKQ63_RS03940	COG1811	Na channel or pump
DKQ63_RS03950	COG1982	Orn Lys Arg decarboxylase major
DKQ63_RS03955	COG2211	Major facilitator Superfamily
DKQ63_RS03970	COG1194	a g-specific adenine glycosylase
DKQ63_RS03985	COG3171	Protein conserved in bacteria
DKQ63_RS03995	COG0252	asparaginase activity
DKQ63_RS04005	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DKQ63_RS04020	COG0762	integral membrane protein
DKQ63_RS04025	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
DKQ63_RS04030	COG2805	Type II/IV secretion system protein
DKQ63_RS04045	COG0189	ligase activity
DKQ63_RS04050	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DKQ63_RS04055	COG2356	endonuclease I
DKQ63_RS04065	COG2814	Major facilitator Superfamily
DKQ63_RS04090	COG1166	arginine decarboxylase activity
DKQ63_RS04100	COG0501	Belongs to the peptidase M48B family
DKQ63_RS04105	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DKQ63_RS04110	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS04135	COG1063	alcohol dehydrogenase
DKQ63_RS04140	COG1494	fructose-1,6-bisphosphatase
DKQ63_RS04145	COG3722	fumarate hydratase activity
DKQ63_RS04150	COG1072	(Pantothenic acid kinase))
DKQ63_RS04170	COG0191	fructose-bisphosphate aldolase activity
DKQ63_RS04180	COG0668	transmembrane transport
DKQ63_RS04185	COG1279	arginine transmembrane transporter activity
DKQ63_RS04190	COG2968	Membrane
DKQ63_RS04195	COG0583	DNA-binding transcription factor activity
DKQ63_RS04200	COG0427	acetyl-CoA hydrolase
DKQ63_RS04205	COG1024	Enoyl-CoA hydratase
DKQ63_RS04210	COG1703	isobutyryl-CoA mutase activity
DKQ63_RS04215	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DKQ63_RS04215	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
DKQ63_RS04230	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS04240	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DKQ63_RS04250	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DKQ63_RS04275	COG0006	proline dipeptidase activity
DKQ63_RS04280	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DKQ63_RS04285	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DKQ63_RS04305	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS04310	COG2723	6-phospho-beta-galactosidase activity
DKQ63_RS04320	COG1272	protein, Hemolysin III
DKQ63_RS04330	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
DKQ63_RS04340	COG0716	FMN binding
DKQ63_RS04345	COG4974	Belongs to the 'phage' integrase family
DKQ63_RS04350	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DKQ63_RS04355	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
DKQ63_RS04365	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
DKQ63_RS04380	COG2233	PERMEase
DKQ63_RS04390	COG0493	'glutamate synthase
DKQ63_RS04390	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS04395	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS04400	COG2252	PERMEase
DKQ63_RS04405	COG0402	S-adenosylhomocysteine deaminase activity
DKQ63_RS04410	COG2233	PERMEase
DKQ63_RS04415	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DKQ63_RS04415	COG2080	2 iron, 2 sulfur cluster binding
DKQ63_RS04420	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
DKQ63_RS04425	COG0402	S-adenosylhomocysteine deaminase activity
DKQ63_RS04430	COG0493	'glutamate synthase
DKQ63_RS04430	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS04435	COG2068	MobA-Related Protein
DKQ63_RS04440	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DKQ63_RS04445	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
DKQ63_RS04445	COG3608	succinylglutamate desuccinylase aspartoacylase
DKQ63_RS04450	COG0549	Belongs to the carbamate kinase family
DKQ63_RS04460	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DKQ63_RS04465	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DKQ63_RS04470	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
DKQ63_RS04475	COG3829	transcription factor binding
DKQ63_RS04480	COG2080	2 iron, 2 sulfur cluster binding
DKQ63_RS04485	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
DKQ63_RS04490	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DKQ63_RS04500	COG4942	peptidase
DKQ63_RS04510	COG3387	PFAM Glycoside hydrolase 15-related
DKQ63_RS04600	COG2197	response regulator
DKQ63_RS04615	COG3710	Transcriptional regulator
DKQ63_RS04615	COG0457	Tetratricopeptide repeat
DKQ63_RS04620	COG0457	Tetratricopeptide repeat
DKQ63_RS04650	COG3710	Transcriptional regulator
DKQ63_RS04655	COG2771	luxR family
DKQ63_RS04660	COG0814	amino acid
DKQ63_RS04665	COG0183	Belongs to the thiolase family
DKQ63_RS04675	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS04680	COG2814	Major facilitator Superfamily
DKQ63_RS04685	COG1794	racemase activity, acting on amino acids and derivatives
DKQ63_RS04690	COG0583	DNA-binding transcription factor activity
DKQ63_RS04700	COG1609	Transcriptional regulator
DKQ63_RS04715	COG0667	Aldo Keto reductase
DKQ63_RS04725	COG0861	Integral membrane protein TerC family
DKQ63_RS04740	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
DKQ63_RS04760	COG2165	general secretion pathway protein
DKQ63_RS04765	COG4795	General secretion pathway protein
DKQ63_RS04775	COG4967	type IV pilus modification protein PilV
DKQ63_RS04780	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
DKQ63_RS04790	COG1074	ATP-dependent DNA helicase activity
DKQ63_RS04795	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DKQ63_RS04800	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
DKQ63_RS04800	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DKQ63_RS04805	COG0860	N-Acetylmuramoyl-L-alanine amidase
DKQ63_RS04820	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
DKQ63_RS04825	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DKQ63_RS04830	COG2166	iron-sulfur cluster assembly
DKQ63_RS04835	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DKQ63_RS04845	COG0583	DNA-binding transcription factor activity
DKQ63_RS04850	COG2363	Small membrane protein
DKQ63_RS04860	COG1349	DNA-binding transcription factor activity
DKQ63_RS04870	COG1070	Carbohydrate kinase
DKQ63_RS04880	COG0738	Major facilitator superfamily
DKQ63_RS04885	COG0235	Class ii aldolase
DKQ63_RS04890	COG1454	alcohol dehydrogenase
DKQ63_RS04900	COG1760	l-serine dehydratase
DKQ63_RS04905	COG0814	amino acid
DKQ63_RS04910	COG1611	Belongs to the LOG family
DKQ63_RS04925	COG3098	single-species biofilm formation
DKQ63_RS04930	COG0564	pseudouridine synthase activity
DKQ63_RS04935	COG0716	FMN binding
DKQ63_RS04940	COG2271	Major facilitator Superfamily
DKQ63_RS04945	COG4948	Mandelate Racemase Muconate Lactonizing
DKQ63_RS04950	COG4948	Mandelate Racemase Muconate Lactonizing
DKQ63_RS04955	COG3850	Histidine kinase
DKQ63_RS04955	COG3437	response regulator, receiver
DKQ63_RS04955	COG4999	Histidine kinase
DKQ63_RS04955	COG2205	protein histidine kinase activity
DKQ63_RS04960	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DKQ63_RS04965	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DKQ63_RS04970	COG2336	PFAM SpoVT AbrB
DKQ63_RS04975	COG2337	Toxic component of a toxin-antitoxin (TA) module
DKQ63_RS04980	COG3956	TIGRFAM MazG family protein
DKQ63_RS05005	COG0602	queuosine metabolic process
DKQ63_RS05010	COG1070	Carbohydrate kinase
DKQ63_RS05015	COG2223	nitrite transmembrane transporter activity
DKQ63_RS05020	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS05025	COG0277	FAD linked oxidase domain protein
DKQ63_RS05030	COG0477	Major facilitator Superfamily
DKQ63_RS05035	COG2086	electron transfer activity
DKQ63_RS05040	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DKQ63_RS05045	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
DKQ63_RS05050	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
DKQ63_RS05055	COG0644	oxidoreductase
DKQ63_RS05060	COG0720	synthase
DKQ63_RS05070	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DKQ63_RS05090	COG3385	transposase activity
DKQ63_RS05110	COG1203	CRISPR-associated helicase, Cas3
DKQ63_RS05125	COG1857	crispr-associated protein
DKQ63_RS05140	COG1518	maintenance of DNA repeat elements
DKQ63_RS05145	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DKQ63_RS05150	COG2234	aminopeptidase activity
DKQ63_RS05205	COG4942	peptidase
DKQ63_RS05205	COG1388	LysM domain
DKQ63_RS05210	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DKQ63_RS05215	COG2610	gluconate transmembrane transporter activity
DKQ63_RS05220	COG3622	Belongs to the hyi family
DKQ63_RS05225	COG0235	Class ii aldolase
DKQ63_RS05230	COG3395	kinase activity
DKQ63_RS05235	COG2084	Dehydrogenase
DKQ63_RS05240	COG1349	DNA-binding transcription factor activity
DKQ63_RS05245	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DKQ63_RS05265	COG3604	Transcriptional regulator
DKQ63_RS05270	COG0309	Hydrogenase expression formation protein (HypE)
DKQ63_RS05275	COG0409	Hydrogenase expression formation protein
DKQ63_RS05280	COG0298	carbon dioxide binding
DKQ63_RS05285	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
DKQ63_RS05290	COG0375	protein maturation
DKQ63_RS05300	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS05305	COG0651	ATP synthesis coupled electron transport
DKQ63_RS05310	COG0650	Formate hydrogenlyase subunit 4
DKQ63_RS05315	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
DKQ63_RS05315	COG3261	NADH dehydrogenase
DKQ63_RS05320	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DKQ63_RS05325	COG3260	NADH ubiquinone oxidoreductase 20
DKQ63_RS05335	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
DKQ63_RS05340	COG2723	6-phospho-beta-galactosidase activity
DKQ63_RS05345	COG1263	PTS System
DKQ63_RS05345	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKQ63_RS05350	COG1609	Transcriptional regulator
DKQ63_RS05355	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS05360	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
DKQ63_RS05380	COG0517	IMP dehydrogenase activity
DKQ63_RS05380	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
DKQ63_RS05385	COG1349	DNA-binding transcription factor activity
DKQ63_RS05390	COG4578	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS05395	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS05405	COG3732	PTS system glucitol sorbitol-specific
DKQ63_RS05410	COG3730	PTS system glucitol sorbitol-specific
DKQ63_RS05415	COG2951	lytic endotransglycosylase activity
DKQ63_RS05420	COG1546	Belongs to the CinA family
DKQ63_RS05440	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DKQ63_RS05470	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DKQ63_RS05475	COG1238	metal cluster binding
DKQ63_RS05490	COG2814	Major facilitator Superfamily
DKQ63_RS05495	COG1566	PFAM secretion protein HlyD family protein
DKQ63_RS05500	COG1846	Transcriptional regulator
DKQ63_RS05510	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
DKQ63_RS05515	COG2814	Major facilitator Superfamily
DKQ63_RS05525	COG2113	Glycine betaine
DKQ63_RS05530	COG4176	ABC-type proline glycine betaine transport system permease component
DKQ63_RS05535	COG4175	Glycine betaine
DKQ63_RS05545	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DKQ63_RS05550	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DKQ63_RS05560	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DKQ63_RS05565	COG4575	ribosome binding
DKQ63_RS05580	COG2916	Histone family protein nucleoid-structuring protein H-NS
DKQ63_RS05585	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DKQ63_RS05590	COG0640	Transcriptional regulator
DKQ63_RS05595	COG0401	homolog of Blt101
DKQ63_RS05600	COG1652	LysM domain
DKQ63_RS05605	COG1802	Transcriptional regulator
DKQ63_RS05610	COG1113	amino acid transport
DKQ63_RS05615	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DKQ63_RS05620	COG1012	belongs to the aldehyde dehydrogenase family
DKQ63_RS05625	COG0579	oxidoreductase
DKQ63_RS05660	COG3468	outer membrane autotransporter barrel domain protein
DKQ63_RS05675	COG2867	negative regulation of translational initiation
DKQ63_RS05685	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DKQ63_RS05690	COG0497	DNA recombination
DKQ63_RS05710	COG4536	flavin adenine dinucleotide binding
DKQ63_RS05715	COG4137	Cytochrome C assembly protein
DKQ63_RS05720	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DKQ63_RS05745	COG2885	chlorophyll binding
DKQ63_RS05750	COG2199	diguanylate cyclase activity
DKQ63_RS05765	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DKQ63_RS05770	COG1605	Chorismate mutase
DKQ63_RS05770	COG0287	Prephenate dehydrogenase
DKQ63_RS05775	COG1605	Chorismate mutase
DKQ63_RS05775	COG0077	Prephenate dehydratase
DKQ63_RS05785	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
DKQ63_RS05795	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DKQ63_RS05800	COG0564	pseudouridine synthase activity
DKQ63_RS05805	COG1496	oxidoreductase activity
DKQ63_RS05810	COG0542	response to heat
DKQ63_RS05845	COG5544	Lipoprotein
DKQ63_RS05850	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DKQ63_RS05855	COG1042	CoA-binding domain protein
DKQ63_RS05855	COG0045	succinate-CoA ligase (ADP-forming) activity
DKQ63_RS05855	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DKQ63_RS05860	COG3148	PFAM DTW domain containing protein
DKQ63_RS05865	COG3118	belongs to the thioredoxin family
DKQ63_RS05875	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DKQ63_RS05890	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS05900	COG0583	DNA-binding transcription factor activity
DKQ63_RS05905	COG0513	Belongs to the DEAD box helicase family
DKQ63_RS05915	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
DKQ63_RS05920	COG1595	DNA-templated transcription, initiation
DKQ63_RS05925	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
DKQ63_RS05930	COG3026	antisigma factor binding
DKQ63_RS05935	COG3086	response to oxidative stress
DKQ63_RS05945	COG0681	Belongs to the peptidase S26 family
DKQ63_RS05970	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DKQ63_RS05995	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS06000	COG1737	Transcriptional regulator
DKQ63_RS06005	COG0560	Phosphoserine phosphatase
DKQ63_RS06025	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DKQ63_RS06025	COG0047	phosphoribosylformylglycinamidine synthase activity
DKQ63_RS06030	COG2205	protein histidine kinase activity
DKQ63_RS06035	COG3170	Tfp pilus assembly protein FimV
DKQ63_RS06040	COG2204	response regulator
DKQ63_RS06045	COG0347	Belongs to the P(II) protein family
DKQ63_RS06050	COG1017	nitric oxide dioxygenase activity
DKQ63_RS06050	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKQ63_RS06060	COG1940	carbohydrate kinase activity
DKQ63_RS06065	COG0457	Tetratricopeptide repeat
DKQ63_RS06070	COG1879	ABC-type sugar transport system periplasmic component
DKQ63_RS06075	COG1129	ABC transporter
DKQ63_RS06080	COG1172	Belongs to the binding-protein-dependent transport system permease family
DKQ63_RS06085	COG1063	alcohol dehydrogenase
DKQ63_RS06090	COG2017	converts alpha-aldose to the beta-anomer
DKQ63_RS06095	COG2259	Doxx family
DKQ63_RS06120	COG4638	Rieske (2fe-2S)
DKQ63_RS06125	COG0583	DNA-binding transcription factor activity
DKQ63_RS06130	COG2814	Major facilitator Superfamily
DKQ63_RS06135	COG3711	transcriptional antiterminator
DKQ63_RS06140	COG1073	alpha beta
DKQ63_RS06145	COG0483	inositol monophosphate 1-phosphatase activity
DKQ63_RS06165	COG0822	iron-sulfur transferase activity
DKQ63_RS06185	COG0633	Ferredoxin
DKQ63_RS06190	COG2975	iron-sulfur cluster assembly
DKQ63_RS06205	COG2897	thiosulfate sulfurtransferase activity
DKQ63_RS06210	COG2373	Large extracellular alpha-helical protein
DKQ63_RS06215	COG4953	penicillin-binding protein 1C
DKQ63_RS06250	COG2976	Protein conserved in bacteria
DKQ63_RS06265	COG1645	bacterial-type flagellum-dependent swarming motility
DKQ63_RS06275	COG0516	GMP reductase activity
DKQ63_RS06275	COG0517	IMP dehydrogenase activity
DKQ63_RS06290	COG3133	Outer membrane lipoprotein
DKQ63_RS06310	COG2200	EAL domain
DKQ63_RS06315	COG0248	Ppx GppA phosphatase
DKQ63_RS06320	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DKQ63_RS06325	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DKQ63_RS06345	COG2233	PERMEase
DKQ63_RS06355	COG1393	Belongs to the ArsC family
DKQ63_RS06360	COG4783	chaperone-mediated protein folding
DKQ63_RS06365	COG0628	permease
DKQ63_RS06375	COG2116	formate transmembrane transporter activity
DKQ63_RS06380	COG3604	Transcriptional regulator
DKQ63_RS06390	COG3260	NADH ubiquinone oxidoreductase 20
DKQ63_RS06395	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DKQ63_RS06400	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
DKQ63_RS06400	COG3261	NADH dehydrogenase
DKQ63_RS06405	COG0651	ATP synthesis coupled electron transport
DKQ63_RS06410	COG4237	Hydrogenase 4 membrane
DKQ63_RS06415	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DKQ63_RS06420	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DKQ63_RS06430	COG0651	ATP synthesis coupled electron transport
DKQ63_RS06435	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS06440	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DKQ63_RS06445	COG2716	regulation of RNA biosynthetic process
DKQ63_RS06455	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
DKQ63_RS06465	COG2321	neutral zinc metallopeptidase
DKQ63_RS06475	COG0400	carboxylic ester hydrolase activity
DKQ63_RS06490	COG1393	Belongs to the ArsC family
DKQ63_RS06500	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DKQ63_RS06505	COG3850	Histidine kinase
DKQ63_RS06510	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS06510	COG0493	'glutamate synthase
DKQ63_RS06520	COG5342	invasion associated locus B
DKQ63_RS06525	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
DKQ63_RS06530	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DKQ63_RS06535	COG0281	malic enzyme
DKQ63_RS06535	COG0280	phosphate acetyltransferase
DKQ63_RS06540	COG4810	utilization protein
DKQ63_RS06545	COG4917	ethanolamine utilization protein
DKQ63_RS06550	COG4766	ethanolamine catabolic process
DKQ63_RS06555	COG4812	Cobalamin adenosyltransferase
DKQ63_RS06560	COG0280	phosphate acetyltransferase
DKQ63_RS06565	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
DKQ63_RS06570	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
DKQ63_RS06575	COG1012	belongs to the aldehyde dehydrogenase family
DKQ63_RS06580	COG4820	ethanolamine utilization protein (EutJ)
DKQ63_RS06585	COG1454	alcohol dehydrogenase
DKQ63_RS06590	COG3192	ethanolamine utilization protein
DKQ63_RS06595	COG4819	ethanolamine utilization protein
DKQ63_RS06600	COG4303	Ethanolamine ammonia lyase large subunit
DKQ63_RS06610	COG4816	utilization protein
DKQ63_RS06615	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
DKQ63_RS06620	COG2207	Transcriptional regulator
DKQ63_RS06630	COG0860	N-Acetylmuramoyl-L-alanine amidase
DKQ63_RS06650	COG2837	iron assimilation
DKQ63_RS06655	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DKQ63_RS06660	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKQ63_RS06660	COG1263	PTS System
DKQ63_RS06675	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS06685	COG4150	thiosulfate binding
DKQ63_RS06690	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
DKQ63_RS06695	COG4208	sulfate ABC transporter
DKQ63_RS06700	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DKQ63_RS06705	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DKQ63_RS06720	COG2190	(PTS) system
DKQ63_RS06725	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DKQ63_RS06730	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS06735	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DKQ63_RS06755	COG3530	Putative quorum-sensing-regulated virulence factor
DKQ63_RS06760	COG0385	Bile acid
DKQ63_RS06765	COG0583	DNA-binding transcription factor activity
DKQ63_RS06775	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
DKQ63_RS06790	COG0583	DNA-binding transcription factor activity
DKQ63_RS06825	COG3415	Transposase
DKQ63_RS06830	COG3415	Transposase
DKQ63_RS06845	COG2199	diguanylate cyclase activity
DKQ63_RS06845	COG2200	EAL domain
DKQ63_RS06850	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DKQ63_RS06875	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKQ63_RS06880	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKQ63_RS06885	COG0006	proline dipeptidase activity
DKQ63_RS06890	COG1363	Peptidase, m42
DKQ63_RS06895	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS06895	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS06895	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DKQ63_RS06900	COG2207	Transcriptional regulator
DKQ63_RS06905	COG3279	Response regulator of the LytR AlgR family
DKQ63_RS06910	COG3275	phosphorelay sensor kinase activity
DKQ63_RS06915	COG0436	Aminotransferase
DKQ63_RS06925	COG1560	Kdo2-lipid A biosynthetic process
DKQ63_RS06955	COG0028	Belongs to the TPP enzyme family
DKQ63_RS06960	COG0679	Auxin Efflux Carrier
DKQ63_RS06965	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DKQ63_RS06970	COG2205	protein histidine kinase activity
DKQ63_RS06970	COG0784	Response regulator, receiver
DKQ63_RS06970	COG2198	Histidine kinase
DKQ63_RS06970	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKQ63_RS06975	COG2197	response regulator
DKQ63_RS06980	COG1566	PFAM secretion protein HlyD family protein
DKQ63_RS06985	COG0477	Major facilitator Superfamily
DKQ63_RS06995	COG2610	gluconate transmembrane transporter activity
DKQ63_RS07000	COG0583	DNA-binding transcription factor activity
DKQ63_RS07010	COG2116	formate transmembrane transporter activity
DKQ63_RS07020	COG2853	Lipoprotein
DKQ63_RS07035	COG2067	long-chain fatty acid transport protein
DKQ63_RS07045	COG3691	Protein conserved in bacteria
DKQ63_RS07060	COG2062	phosphohistidine phosphatase, SixA
DKQ63_RS07065	COG3539	Fimbrial protein
DKQ63_RS07070	COG3188	usher protein
DKQ63_RS07075	COG3121	Chaperone
DKQ63_RS07085	COG3539	Fimbrial protein
DKQ63_RS07090	COG3539	Fimbrial protein
DKQ63_RS07100	COG3385	transposase activity
DKQ63_RS07110	COG2890	protein-(glutamine-N5) methyltransferase activity
DKQ63_RS07125	COG0730	response to heat
DKQ63_RS07130	COG3101	peptidyl-lysine hydroxylation
DKQ63_RS07145	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DKQ63_RS07155	COG2814	Major facilitator Superfamily
DKQ63_RS07170	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
DKQ63_RS07180	COG0586	Pfam SNARE associated Golgi protein
DKQ63_RS07190	COG0285	dihydrofolate synthase activity
DKQ63_RS07195	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
DKQ63_RS07200	COG1286	toxin biosynthetic process
DKQ63_RS07205	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
DKQ63_RS07210	COG0163	prenyltransferase activity
DKQ63_RS07215	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKQ63_RS07220	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKQ63_RS07225	COG4215	(ABC) transporter
DKQ63_RS07230	COG4160	amino acid transport
DKQ63_RS07235	COG4598	ABC transporter
DKQ63_RS07240	COG5464	transposase or invertase
DKQ63_RS07245	COG1090	epimerase
DKQ63_RS07250	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DKQ63_RS07255	COG0625	glutathione transferase activity
DKQ63_RS07260	COG0625	glutathione transferase activity
DKQ63_RS07265	COG0622	Phosphoesterase
DKQ63_RS07270	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
DKQ63_RS07275	COG1288	antiporter activity
DKQ63_RS07280	COG0280	phosphate acetyltransferase
DKQ63_RS07280	COG0857	belongs to the CobB CobQ family
DKQ63_RS07285	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
DKQ63_RS07300	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DKQ63_RS07305	COG0471	metal ion transport
DKQ63_RS07305	COG0490	domain, Protein
DKQ63_RS07315	COG0436	Aminotransferase
DKQ63_RS07325	COG0583	DNA-binding transcription factor activity
DKQ63_RS07345	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
DKQ63_RS07350	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
DKQ63_RS07355	COG1034	ATP synthesis coupled electron transport
DKQ63_RS07370	COG0839	Belongs to the complex I subunit 6 family
DKQ63_RS07380	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DKQ63_RS07385	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DKQ63_RS07415	COG2153	protein acetylation
DKQ63_RS07420	COG4575	ribosome binding
DKQ63_RS07425	COG1169	isochorismate synthase
DKQ63_RS07440	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
DKQ63_RS07450	COG0318	PFAM AMP-dependent synthetase and ligase
DKQ63_RS07515	COG1414	Transcriptional regulator
DKQ63_RS07525	COG2271	Major facilitator Superfamily
DKQ63_RS07540	COG5464	transposase or invertase
DKQ63_RS07545	COG0247	lactate metabolic process
DKQ63_RS07555	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
DKQ63_RS07560	COG2271	Major facilitator Superfamily
DKQ63_RS07565	COG0584	glycerophosphoryl diester phosphodiesterase
DKQ63_RS07570	COG0583	DNA-binding transcription factor activity
DKQ63_RS07575	COG3642	lipopolysaccharide core region biosynthetic process
DKQ63_RS07580	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKQ63_RS07585	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DKQ63_RS07590	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DKQ63_RS07600	COG3468	outer membrane autotransporter barrel domain protein
DKQ63_RS07610	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
DKQ63_RS07615	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
DKQ63_RS07620	COG3234	Protein of unknown function (DUF1175)
DKQ63_RS07625	COG2373	Large extracellular alpha-helical protein
DKQ63_RS07630	COG5445	Predicted secreted protein (DUF2300)
DKQ63_RS07635	COG4676	Protein conserved in bacteria
DKQ63_RS07640	COG0183	Belongs to the thiolase family
DKQ63_RS07645	COG2031	fatty acid transporter
DKQ63_RS07650	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DKQ63_RS07655	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DKQ63_RS07660	COG2204	response regulator
DKQ63_RS07665	COG3852	Histidine kinase
DKQ63_RS07670	COG2205	protein histidine kinase activity
DKQ63_RS07670	COG0784	Response regulator, receiver
DKQ63_RS07675	COG2197	response regulator
DKQ63_RS07680	COG2198	Histidine kinase
DKQ63_RS07680	COG0642	Histidine kinase
DKQ63_RS07695	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
DKQ63_RS07700	COG1477	protein flavinylation
DKQ63_RS07705	COG2169	Transcriptional regulator
DKQ63_RS07705	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DKQ63_RS07710	COG3145	DNA-N1-methyladenine dioxygenase activity
DKQ63_RS07715	COG4615	Cyclic peptide transporter
DKQ63_RS07735	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS07735	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DKQ63_RS07740	COG3062	negative regulation of establishment of protein localization
DKQ63_RS07750	COG0437	4 iron, 4 sulfur cluster binding
DKQ63_RS07755	COG0348	domain, Protein
DKQ63_RS07760	COG3043	anaerobic respiration
DKQ63_RS07765	COG3005	denitrification pathway
DKQ63_RS07770	COG4133	protoheme IX ABC transporter activity
DKQ63_RS07775	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DKQ63_RS07780	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DKQ63_RS07785	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
DKQ63_RS07795	COG1138	Cytochrome C-type biogenesis protein
DKQ63_RS07800	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DKQ63_RS07805	COG3088	subunit of a heme lyase
DKQ63_RS07805	COG4235	cytochrome complex assembly
DKQ63_RS07810	COG2197	response regulator
DKQ63_RS07820	COG3468	outer membrane autotransporter barrel domain protein
DKQ63_RS07830	COG3083	sulfuric ester hydrolase activity
DKQ63_RS07850	COG1061	Type III restriction enzyme res subunit
DKQ63_RS07860	COG1187	pseudouridine synthase activity
DKQ63_RS07865	COG2814	Major facilitator Superfamily
DKQ63_RS07880	COG4172	Belongs to the ABC transporter superfamily
DKQ63_RS07885	COG4239	(ABC) transporter, permease
DKQ63_RS07890	COG4174	ABC transporter (Permease)
DKQ63_RS07895	COG4166	transmembrane transport
DKQ63_RS07900	COG2200	EAL domain
DKQ63_RS07905	COG0791	NLP P60 protein
DKQ63_RS07910	COG0671	phosphoesterase, PA-phosphatase related
DKQ63_RS07915	COG0523	cobalamin synthesis protein
DKQ63_RS07920	COG0246	Mannitol dehydrogenase
DKQ63_RS07935	COG2814	Major facilitator Superfamily
DKQ63_RS07940	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS07940	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS07945	COG1105	Belongs to the carbohydrate kinase PfkB family
DKQ63_RS07950	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
DKQ63_RS07950	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKQ63_RS07950	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKQ63_RS07955	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKQ63_RS07960	COG2313	pseudouridylate synthase activity
DKQ63_RS07965	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DKQ63_RS07995	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
DKQ63_RS08000	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKQ63_RS08000	COG1522	sequence-specific DNA binding
DKQ63_RS08010	COG2855	membrane
DKQ63_RS08015	COG0583	DNA-binding transcription factor activity
DKQ63_RS08025	COG0833	amino acid
DKQ63_RS08035	COG4771	TonB-dependent receptor
DKQ63_RS08060	COG2311	Membrane
DKQ63_RS08070	COG1609	Transcriptional regulator
DKQ63_RS08075	COG1879	ABC-type sugar transport system periplasmic component
DKQ63_RS08080	COG1129	ABC transporter
DKQ63_RS08085	COG4211	Belongs to the binding-protein-dependent transport system permease family
DKQ63_RS08090	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DKQ63_RS08090	COG0167	dihydroorotate dehydrogenase activity
DKQ63_RS08095	COG0493	'glutamate synthase
DKQ63_RS08105	COG2949	membrane
DKQ63_RS08115	COG1346	cytolysis
DKQ63_RS08125	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DKQ63_RS08150	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS08155	COG0586	Pfam SNARE associated Golgi protein
DKQ63_RS08165	COG1686	Belongs to the peptidase S11 family
DKQ63_RS08170	COG0277	FAD linked oxidase domain protein
DKQ63_RS08175	COG1472	Belongs to the glycosyl hydrolase 3 family
DKQ63_RS08180	COG1732	Glycine betaine
DKQ63_RS08185	COG1174	glycine betaine transport
DKQ63_RS08190	COG1125	glycine betaine transport
DKQ63_RS08195	COG1174	glycine betaine transport
DKQ63_RS08205	COG0789	Transcriptional regulator
DKQ63_RS08210	COG3275	phosphorelay sensor kinase activity
DKQ63_RS08215	COG3279	Response regulator of the LytR AlgR family
DKQ63_RS08220	COG4807	Protein conserved in bacteria
DKQ63_RS08225	COG4808	Protein conserved in bacteria
DKQ63_RS08230	COG4715	Zinc finger, swim domain protein
DKQ63_RS08235	COG3552	Protein containing von Willebrand factor type A (VWA) domain
DKQ63_RS08240	COG2425	protein containing a von Willebrand factor type A (vWA) domain
DKQ63_RS08245	COG0714	Associated with various cellular activities
DKQ63_RS08255	COG3831	ATPase activity
DKQ63_RS08260	COG3831	ATPase activity
DKQ63_RS08270	COG0489	protein tyrosine kinase activity
DKQ63_RS08285	COG3539	Fimbrial protein
DKQ63_RS08290	COG3121	Chaperone
DKQ63_RS08295	COG3188	usher protein
DKQ63_RS08300	COG3539	Fimbrial protein
DKQ63_RS08305	COG5455	response to cobalt ion
DKQ63_RS08325	COG0351	phosphomethylpyrimidine kinase
DKQ63_RS08330	COG3757	hydrolase, family 25
DKQ63_RS08335	COG2188	Transcriptional regulator
DKQ63_RS08340	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKQ63_RS08345	COG1397	ADP-ribosylglycohydrolase
DKQ63_RS08350	COG2211	Major facilitator Superfamily
DKQ63_RS08355	COG1830	Aldolase
DKQ63_RS08370	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS08375	COG3414	Phosphotransferase system galactitol-specific IIB component
DKQ63_RS08380	COG3775	system Galactitol-specific IIC component
DKQ63_RS08385	COG1063	alcohol dehydrogenase
DKQ63_RS08410	COG0826	peptidase U32
DKQ63_RS08420	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS08425	COG2205	protein histidine kinase activity
DKQ63_RS08460	COG4245	von Willebrand factor, type A
DKQ63_RS08465	COG0631	protein serine/threonine phosphatase activity
DKQ63_RS08470	COG3779	Protein conserved in bacteria
DKQ63_RS08475	COG4248	protein with protein kinase and helix-hairpin-helix DNA-binding domains
DKQ63_RS08480	COG0443	Heat shock 70 kDa protein
DKQ63_RS08485	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
DKQ63_RS08490	COG3447	MASE1 domain protein
DKQ63_RS08490	COG5001	Diguanylate cyclase
DKQ63_RS08490	COG5002	protein histidine kinase activity
DKQ63_RS08495	COG0572	uridine kinase
DKQ63_RS08505	COG2982	Protein involved in outer membrane biogenesis
DKQ63_RS08510	COG1253	flavin adenine dinucleotide binding
DKQ63_RS08515	COG1596	polysaccharide export
DKQ63_RS08520	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DKQ63_RS08525	COG0489	protein tyrosine kinase activity
DKQ63_RS08525	COG3206	protein involved in exopolysaccharide biosynthesis
DKQ63_RS08530	COG0463	Glycosyl transferase, family 2
DKQ63_RS08535	COG1045	serine acetyltransferase
DKQ63_RS08540	COG0438	transferase activity, transferring glycosyl groups
DKQ63_RS08550	COG1216	Glycosyl transferase, family 2
DKQ63_RS08555	COG0110	maltose O-acetyltransferase activity
DKQ63_RS08560	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
DKQ63_RS08565	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DKQ63_RS08570	COG1051	belongs to the nudix hydrolase family
DKQ63_RS08575	COG0297	glycogen (starch) synthase activity
DKQ63_RS08580	COG0662	Cupin 2, conserved barrel domain protein
DKQ63_RS08580	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
DKQ63_RS08585	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DKQ63_RS08590	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DKQ63_RS08595	COG2244	polysaccharide biosynthetic process
DKQ63_RS08600	COG2327	Polysaccharide pyruvyl transferase
DKQ63_RS08605	COG0438	transferase activity, transferring glycosyl groups
DKQ63_RS08615	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DKQ63_RS08625	COG1088	dTDP-glucose 4,6-dehydratase activity
DKQ63_RS08630	COG1091	dTDP-4-dehydrorhamnose reductase activity
DKQ63_RS08660	COG3754	Rhamnan synthesis protein F
DKQ63_RS08680	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
DKQ63_RS08710	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DKQ63_RS08715	COG0131	Imidazoleglycerol-phosphate dehydratase
DKQ63_RS08715	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
DKQ63_RS08745	COG2161	toxin-antitoxin pair type II binding
DKQ63_RS08750	COG4115	mRNA cleavage
DKQ63_RS08755	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DKQ63_RS08760	COG0583	DNA-binding transcription factor activity
DKQ63_RS08770	COG0531	amino acid
DKQ63_RS08775	COG2391	methyltransferase activity
DKQ63_RS08780	COG0425	Belongs to the sulfur carrier protein TusA family
DKQ63_RS08785	COG2925	Exonuclease
DKQ63_RS08790	COG1686	Belongs to the peptidase S11 family
DKQ63_RS08800	COG1289	transmembrane transporter activity
DKQ63_RS08810	COG4917	ethanolamine utilization protein
DKQ63_RS08815	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS08865	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
DKQ63_RS08880	COG1376	ErfK ybiS ycfS ynhG family protein
DKQ63_RS08890	COG0583	DNA-binding transcription factor activity
DKQ63_RS08895	COG0583	DNA-binding transcription factor activity
DKQ63_RS08905	COG0534	Mate efflux family protein
DKQ63_RS08920	COG0217	transcriptional regulatory protein
DKQ63_RS08925	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DKQ63_RS08930	COG0477	Major facilitator Superfamily
DKQ63_RS08940	COG1388	LysM domain
DKQ63_RS08940	COG1470	cell adhesion involved in biofilm formation
DKQ63_RS08965	COG3038	cytochrome b561
DKQ63_RS08970	COG3443	Belongs to the bacterial solute-binding protein 9 family
DKQ63_RS08985	COG2351	hydroxyisourate hydrolase activity
DKQ63_RS08990	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS08995	COG2205	protein histidine kinase activity
DKQ63_RS09010	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
DKQ63_RS09020	COG1418	mRNA catabolic process
DKQ63_RS09025	COG0270	DNA (cytosine-5-)-methyltransferase activity
DKQ63_RS09030	COG3727	T/G mismatch-specific endonuclease activity
DKQ63_RS09035	COG0697	spore germination
DKQ63_RS09040	COG2354	Protein conserved in bacteria
DKQ63_RS09045	COG5475	Uncharacterized small protein (DUF2158)
DKQ63_RS09055	COG3706	GGDEF domain
DKQ63_RS09075	COG2197	response regulator
DKQ63_RS09080	COG1684	flagellar biosynthetic protein fliR
DKQ63_RS09085	COG1987	bacterial-type flagellum assembly
DKQ63_RS09090	COG1338	Plays a role in the flagellum-specific transport system
DKQ63_RS09095	COG3190	flagellar
DKQ63_RS09100	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DKQ63_RS09105	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DKQ63_RS09110	COG1580	Controls the rotational direction of flagella during chemotaxis
DKQ63_RS09115	COG3144	bacterial-type flagellum assembly
DKQ63_RS09120	COG2882	bacterial-type flagellum organization
DKQ63_RS09125	COG1157	protein secretion by the type III secretion system
DKQ63_RS09130	COG1317	bacterial-type flagellum organization
DKQ63_RS09135	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
DKQ63_RS09140	COG1766	The M ring may be actively involved in energy transduction
DKQ63_RS09150	COG2135	peptidase activity
DKQ63_RS09155	COG0425	Belongs to the sulfur carrier protein TusA family
DKQ63_RS09160	COG2391	methyltransferase activity
DKQ63_RS09175	COG0366	Alpha amylase catalytic
DKQ63_RS09185	COG1516	flagellar protein fliS
DKQ63_RS09190	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
DKQ63_RS09200	COG1191	sigma factor activity
DKQ63_RS09210	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKQ63_RS09220	COG0765	amino acid transport
DKQ63_RS09225	COG1126	abc transporter atp-binding protein
DKQ63_RS09230	COG2197	response regulator
DKQ63_RS09240	COG2197	response regulator
DKQ63_RS09270	COG3012	SEC-C Motif Domain Protein
DKQ63_RS09270	COG3318	Belongs to the UPF0149 family
DKQ63_RS09275	COG0814	amino acid
DKQ63_RS09285	COG1528	Iron-storage protein
DKQ63_RS09310	COG1528	Iron-storage protein
DKQ63_RS09320	COG1879	ABC-type sugar transport system periplasmic component
DKQ63_RS09325	COG1129	ABC transporter
DKQ63_RS09330	COG1172	Belongs to the binding-protein-dependent transport system permease family
DKQ63_RS09335	COG1877	trehalose-phosphatase activity
DKQ63_RS09345	COG0589	response to stress
DKQ63_RS09360	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
DKQ63_RS09365	COG1360	Flagellar Motor Protein
DKQ63_RS09370	COG2198	Histidine kinase
DKQ63_RS09370	COG0643	Histidine kinase
DKQ63_RS09375	COG0835	chemotaxis
DKQ63_RS09380	COG0840	transmembrane signaling receptor activity
DKQ63_RS09385	COG0840	transmembrane signaling receptor activity
DKQ63_RS09390	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DKQ63_RS09400	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS09405	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
DKQ63_RS09410	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DKQ63_RS09415	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DKQ63_RS09425	COG3755	Protein conserved in bacteria
DKQ63_RS09440	COG3102	Protein conserved in bacteria
DKQ63_RS09450	COG3005	denitrification pathway
DKQ63_RS09455	COG0243	molybdopterin cofactor binding
DKQ63_RS09470	COG3788	relative of glutathione S-transferase, MAPEG superfamily
DKQ63_RS09475	COG1801	Protein of unknown function DUF72
DKQ63_RS09480	COG1335	isochorismatase
DKQ63_RS09490	COG0494	nUDIX hydrolase
DKQ63_RS09495	COG0217	transcriptional regulatory protein
DKQ63_RS09525	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DKQ63_RS09535	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
DKQ63_RS09540	COG0739	heme binding
DKQ63_RS09545	COG1560	Kdo2-lipid A biosynthetic process
DKQ63_RS09550	COG0469	pyruvate kinase activity
DKQ63_RS09555	COG1737	Transcriptional regulator
DKQ63_RS09560	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DKQ63_RS09565	COG0129	dihydroxy-acid dehydratase activity
DKQ63_RS09570	COG0800	Aldolase
DKQ63_RS09580	COG3141	response to X-ray
DKQ63_RS09590	COG2979	Protein of unknown function (DUF533)
DKQ63_RS09595	COG1770	oligopeptidase
DKQ63_RS09600	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DKQ63_RS09605	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DKQ63_RS09615	COG2372	response to copper ion
DKQ63_RS09620	COG1276	copper resistance
DKQ63_RS09630	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DKQ63_RS09650	COG3008	intermembrane lipid transfer
DKQ63_RS09655	COG2995	paraquat-inducible protein a
DKQ63_RS09660	COG1956	GAF domain-containing protein
DKQ63_RS09670	COG0793	Belongs to the peptidase S41A family
DKQ63_RS09680	COG2814	Major facilitator Superfamily
DKQ63_RS09685	COG1414	Transcriptional regulator
DKQ63_RS09720	COG2226	methyltransferase
DKQ63_RS09740	COG3716	PTS system mannose fructose sorbose family IID component
DKQ63_RS09745	COG3715	PTS system
DKQ63_RS09750	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKQ63_RS09750	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS09765	COG1253	flavin adenine dinucleotide binding
DKQ63_RS09770	COG2200	EAL domain
DKQ63_RS09775	COG1760	l-serine dehydratase
DKQ63_RS09785	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DKQ63_RS09805	COG0251	oxidation-reduction process
DKQ63_RS09810	COG1199	ATP-dependent helicase activity
DKQ63_RS09815	COG1214	PFAM Peptidase M22, glycoprotease
DKQ63_RS09820	COG3065	identical protein binding
DKQ63_RS09825	COG0318	PFAM AMP-dependent synthetase and ligase
DKQ63_RS09830	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
DKQ63_RS09835	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKQ63_RS09840	COG4638	Rieske (2fe-2S)
DKQ63_RS09865	COG0473	3-isopropylmalate dehydrogenase activity
DKQ63_RS09870	COG0583	DNA-binding transcription factor activity
DKQ63_RS09880	COG3615	Tellurite resistance protein tehB
DKQ63_RS09890	COG2261	transglycosylase associated protein
DKQ63_RS09905	COG2199	diguanylate cyclase activity
DKQ63_RS09905	COG2203	Gaf domain
DKQ63_RS09910	COG3042	response to heat
DKQ63_RS09915	COG3189	MarR family transcriptional regulator
DKQ63_RS09920	COG2807	transmembrane transport
DKQ63_RS09925	COG2207	Transcriptional regulator
DKQ63_RS09940	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DKQ63_RS09945	COG2199	diguanylate cyclase activity
DKQ63_RS09950	COG2199	diguanylate cyclase activity
DKQ63_RS09960	COG2766	serine protein kinase
DKQ63_RS09965	COG3713	MltA-interacting MipA family protein
DKQ63_RS09970	COG0656	L-ascorbic acid biosynthetic process
DKQ63_RS09975	COG0676	glucose-6-phosphate 1-epimerase activity
DKQ63_RS09980	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DKQ63_RS09990	COG3139	Protein of unknown function (DUF1315)
DKQ63_RS09995	COG1063	alcohol dehydrogenase
DKQ63_RS10020	COG1349	DNA-binding transcription factor activity
DKQ63_RS10025	COG2814	Major facilitator Superfamily
DKQ63_RS10030	COG1335	isochorismatase
DKQ63_RS10035	COG0252	asparaginase activity
DKQ63_RS10040	COG0616	signal peptide processing
DKQ63_RS10050	COG0778	Nitroreductase
DKQ63_RS10065	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DKQ63_RS10075	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
DKQ63_RS10085	COG0494	nUDIX hydrolase
DKQ63_RS10090	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
DKQ63_RS10095	COG2897	thiosulfate sulfurtransferase activity
DKQ63_RS10100	COG4136	ATPase activity
DKQ63_RS10105	COG4135	transport system, permease component
DKQ63_RS10110	COG4134	Bacterial extracellular solute-binding protein
DKQ63_RS10115	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DKQ63_RS10120	COG0398	Pfam SNARE associated Golgi protein
DKQ63_RS10130	COG0398	Pfam SNARE associated Golgi protein
DKQ63_RS10135	COG0708	Exodeoxyribonuclease III
DKQ63_RS10170	COG3678	ATP-independent chaperone mediated protein folding
DKQ63_RS10180	COG0322	excinuclease ABC activity
DKQ63_RS10190	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DKQ63_RS10200	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DKQ63_RS10205	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
DKQ63_RS10210	COG1447	Phosphotransferase system cellobiose-specific component IIA
DKQ63_RS10215	COG2169	Transcriptional regulator
DKQ63_RS10215	COG1917	Cupin 2, conserved barrel domain protein
DKQ63_RS10220	COG1486	melibiose metabolic process
DKQ63_RS10230	COG0753	catalase activity
DKQ63_RS10245	COG1823	symporter activity
DKQ63_RS10250	COG1988	membrane-bound metal-dependent
DKQ63_RS10255	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DKQ63_RS10265	COG3001	Fructosamine kinase
DKQ63_RS10275	COG1105	Belongs to the carbohydrate kinase PfkB family
DKQ63_RS10280	COG3137	Salt-induced outer membrane protein
DKQ63_RS10345	COG0386	Belongs to the glutathione peroxidase family
DKQ63_RS10355	COG0791	NLP P60 protein
DKQ63_RS10360	COG2200	EAL domain
DKQ63_RS10370	COG4256	Hemin uptake protein
DKQ63_RS10375	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DKQ63_RS10390	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DKQ63_RS10390	COG0574	Belongs to the PEP-utilizing enzyme family
DKQ63_RS10395	COG0318	PFAM AMP-dependent synthetase and ligase
DKQ63_RS10400	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
DKQ63_RS10405	COG0644	oxidoreductase
DKQ63_RS10410	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DKQ63_RS10415	COG2086	electron transfer activity
DKQ63_RS10425	COG2207	Transcriptional regulator
DKQ63_RS10425	COG1917	Cupin 2, conserved barrel domain protein
DKQ63_RS10430	COG1960	acyl-CoA dehydrogenase activity
DKQ63_RS10465	COG2271	Major facilitator Superfamily
DKQ63_RS10470	COG0738	Major facilitator superfamily
DKQ63_RS10500	COG0628	permease
DKQ63_RS10510	COG0277	FAD linked oxidase domain protein
DKQ63_RS10510	COG0247	lactate metabolic process
DKQ63_RS10515	COG2050	protein possibly involved in aromatic compounds catabolism
DKQ63_RS10525	COG0316	Belongs to the HesB IscA family
DKQ63_RS10530	COG0719	Fe-S assembly protein
DKQ63_RS10535	COG0396	ATPase activity
DKQ63_RS10540	COG0719	Fe-S assembly protein
DKQ63_RS10555	COG1376	ErfK ybiS ycfS ynhG family protein
DKQ63_RS10560	COG4238	major outer membrane lipoprotein
DKQ63_RS10565	COG0469	pyruvate kinase activity
DKQ63_RS10575	COG0437	4 iron, 4 sulfur cluster binding
DKQ63_RS10585	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS10600	COG0437	4 iron, 4 sulfur cluster binding
DKQ63_RS10605	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
DKQ63_RS10615	COG4529	Protein conserved in bacteria
DKQ63_RS10635	COG3468	outer membrane autotransporter barrel domain protein
DKQ63_RS10645	COG0307	riboflavin synthase, alpha
DKQ63_RS10650	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DKQ63_RS10655	COG2814	Major facilitator Superfamily
DKQ63_RS10660	COG0583	DNA-binding transcription factor activity
DKQ63_RS10680	COG2814	Major facilitator Superfamily
DKQ63_RS10685	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DKQ63_RS10690	COG0791	NLP P60 protein
DKQ63_RS10695	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DKQ63_RS10700	COG1201	RNA secondary structure unwinding
DKQ63_RS10705	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DKQ63_RS10710	COG0346	lactoylglutathione lyase activity
DKQ63_RS10715	COG1902	pentaerythritol trinitrate reductase activity
DKQ63_RS10720	COG1309	transcriptional regulator
DKQ63_RS10725	COG3313	Fe-S protein
DKQ63_RS10730	COG4989	oxidoreductase activity
DKQ63_RS10735	COG2032	superoxide dismutase activity
DKQ63_RS10740	COG1289	transmembrane transporter activity
DKQ63_RS10745	COG1566	PFAM secretion protein HlyD family protein
DKQ63_RS10760	COG3133	Outer membrane lipoprotein
DKQ63_RS10770	COG3895	Periplasmic Protein
DKQ63_RS10785	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
DKQ63_RS10790	COG0625	glutathione transferase activity
DKQ63_RS10795	COG3104	oligopeptide transport
DKQ63_RS10805	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DKQ63_RS10815	COG4659	FMN binding
DKQ63_RS10865	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS10880	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DKQ63_RS10885	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKQ63_RS10885	COG1263	PTS System
DKQ63_RS10890	COG1609	Transcriptional regulator
DKQ63_RS10895	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS10900	COG1309	transcriptional regulator
DKQ63_RS10905	COG3250	beta-galactosidase activity
DKQ63_RS10920	COG5339	Protein conserved in bacteria
DKQ63_RS10925	COG1482	cell wall glycoprotein biosynthetic process
DKQ63_RS10930	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DKQ63_RS10930	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DKQ63_RS10935	COG0114	fumarate hydratase activity
DKQ63_RS10945	COG2205	protein histidine kinase activity
DKQ63_RS10950	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS10955	COG3136	membrane protein required for alginate biosynthesis
DKQ63_RS10965	COG0531	amino acid
DKQ63_RS10980	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
DKQ63_RS10985	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
DKQ63_RS10990	COG0628	permease
DKQ63_RS11010	COG3591	Belongs to the peptidase S1B family
DKQ63_RS11030	COG2814	Major facilitator Superfamily
DKQ63_RS11035	COG0583	DNA-binding transcription factor activity
DKQ63_RS11040	COG1940	carbohydrate kinase activity
DKQ63_RS11045	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DKQ63_RS11055	COG3381	protein complex oligomerization
DKQ63_RS11060	COG3302	dmso reductase anchor subunit
DKQ63_RS11065	COG0437	4 iron, 4 sulfur cluster binding
DKQ63_RS11070	COG0243	molybdopterin cofactor binding
DKQ63_RS11075	COG0243	molybdopterin cofactor binding
DKQ63_RS11090	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DKQ63_RS11110	COG4948	Mandelate Racemase Muconate Lactonizing
DKQ63_RS11115	COG1063	alcohol dehydrogenase
DKQ63_RS11120	COG0477	Major facilitator Superfamily
DKQ63_RS11125	COG0246	Mannitol dehydrogenase
DKQ63_RS11135	COG1802	Transcriptional regulator
DKQ63_RS11140	COG4221	oxidoreductase activity
DKQ63_RS11145	COG0339	signal peptide processing
DKQ63_RS11150	COG1546	Belongs to the CinA family
DKQ63_RS11155	COG3111	PFAM Bacterial OB fold (BOF) protein
DKQ63_RS11160	COG3706	GGDEF domain
DKQ63_RS11170	COG2814	Major facilitator Superfamily
DKQ63_RS11175	COG0697	spore germination
DKQ63_RS11185	COG4977	sequence-specific DNA binding
DKQ63_RS11190	COG1846	Transcriptional regulator
DKQ63_RS11210	COG0583	DNA-binding transcription factor activity
DKQ63_RS11215	COG1012	belongs to the aldehyde dehydrogenase family
DKQ63_RS11220	COG2066	Belongs to the glutaminase family
DKQ63_RS11230	COG2199	diguanylate cyclase activity
DKQ63_RS11250	COG3781	membrane
DKQ63_RS11305	COG1396	sequence-specific DNA binding
DKQ63_RS11310	COG3550	peptidyl-serine autophosphorylation
DKQ63_RS11330	COG3539	Fimbrial protein
DKQ63_RS11335	COG3539	Fimbrial protein
DKQ63_RS11340	COG3539	Fimbrial protein
DKQ63_RS11345	COG0243	molybdopterin cofactor binding
DKQ63_RS11355	COG2207	Transcriptional regulator
DKQ63_RS11360	COG3119	arylsulfatase activity
DKQ63_RS11365	COG0641	radical SAM
DKQ63_RS11370	COG4178	(ABC) transporter
DKQ63_RS11375	COG4771	TonB-dependent receptor
DKQ63_RS11380	COG0612	Peptidase, M16
DKQ63_RS11385	COG0076	glutamate decarboxylase activity
DKQ63_RS11390	COG0531	amino acid
DKQ63_RS11395	COG1649	PFAM Uncharacterised BCR, COG1649
DKQ63_RS11400	COG3706	GGDEF domain
DKQ63_RS11405	COG2199	diguanylate cyclase activity
DKQ63_RS11405	COG2200	EAL domain
DKQ63_RS11405	COG2202	Pas domain
DKQ63_RS11410	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
DKQ63_RS11420	COG0601	transmembrane transport
DKQ63_RS11425	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DKQ63_RS11430	COG0444	Belongs to the ABC transporter superfamily
DKQ63_RS11435	COG4608	Belongs to the ABC transporter superfamily
DKQ63_RS11440	COG1764	response to oxidative stress
DKQ63_RS11465	COG1064	alcohol dehydrogenase
DKQ63_RS11470	COG3093	addiction module antidote protein HigA
DKQ63_RS11475	COG2864	formate dehydrogenase
DKQ63_RS11480	COG0437	4 iron, 4 sulfur cluster binding
DKQ63_RS11490	COG0697	spore germination
DKQ63_RS11495	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
DKQ63_RS11520	COG2223	nitrite transmembrane transporter activity
DKQ63_RS11525	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
DKQ63_RS11530	COG1140	nitrate reductase beta subunit
DKQ63_RS11535	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
DKQ63_RS11540	COG2181	nitrate reductase activity
DKQ63_RS11545	COG0384	phenazine biosynthesis protein PhzF
DKQ63_RS11550	COG2162	N-hydroxyarylamine O-acetyltransferase activity
DKQ63_RS11555	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DKQ63_RS11565	COG5433	transposase activity
DKQ63_RS11585	COG3209	COG3209 Rhs family protein
DKQ63_RS11600	COG0625	glutathione transferase activity
DKQ63_RS11605	COG1113	amino acid transport
DKQ63_RS11610	COG3391	amine dehydrogenase activity
DKQ63_RS11625	COG4772	TonB-dependent receptor
DKQ63_RS11630	COG1802	Transcriptional regulator
DKQ63_RS11635	COG2130	NADP-dependent
DKQ63_RS11645	COG1247	-acetyltransferase
DKQ63_RS11650	COG3238	Protein conserved in bacteria
DKQ63_RS11685	COG1177	transmembrane transport
DKQ63_RS11690	COG1176	ABC-type spermidine putrescine transport system, permease component I
DKQ63_RS11695	COG3842	ATPase activity
DKQ63_RS11700	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
DKQ63_RS11705	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DKQ63_RS11710	COG1598	PFAM Uncharacterised protein family UPF0150
DKQ63_RS11715	COG1724	mRNA binding
DKQ63_RS11725	COG0826	peptidase U32
DKQ63_RS11730	COG1396	sequence-specific DNA binding
DKQ63_RS11735	COG3135	benzoate transporter
DKQ63_RS11740	COG0675	Transposase, IS605 OrfB family
DKQ63_RS11755	COG0500	methyltransferase
DKQ63_RS11760	COG1275	C4-dicarboxylate transporter malic acid transport protein
DKQ63_RS11765	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DKQ63_RS11770	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DKQ63_RS11775	COG2841	Protein conserved in bacteria
DKQ63_RS11795	COG5383	Protein conserved in bacteria
DKQ63_RS11800	COG0583	DNA-binding transcription factor activity
DKQ63_RS11805	COG0840	transmembrane signaling receptor activity
DKQ63_RS11820	COG3038	cytochrome b561
DKQ63_RS11825	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DKQ63_RS11830	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DKQ63_RS11835	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DKQ63_RS11840	COG1012	belongs to the aldehyde dehydrogenase family
DKQ63_RS11845	COG1434	Gram-negative-bacterium-type cell wall biogenesis
DKQ63_RS11850	COG1643	Atp-dependent helicase
DKQ63_RS11860	COG2453	phosphatase
DKQ63_RS11860	COG0671	phosphoesterase, PA-phosphatase related
DKQ63_RS11865	COG2267	carboxylic ester hydrolase activity
DKQ63_RS11875	COG0667	Aldo Keto reductase
DKQ63_RS11880	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DKQ63_RS11885	COG3327	negative regulation of DNA-templated transcription, initiation
DKQ63_RS11890	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
DKQ63_RS11895	COG0183	Belongs to the thiolase family
DKQ63_RS11900	COG2050	protein possibly involved in aromatic compounds catabolism
DKQ63_RS11905	COG1250	3-hydroxyacyl-CoA dehydrogenase
DKQ63_RS11910	COG1024	Enoyl-CoA hydratase
DKQ63_RS11915	COG1024	Enoyl-CoA hydratase
DKQ63_RS11920	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKQ63_RS11925	COG2151	metal-sulfur cluster biosynthetic enzyme
DKQ63_RS11930	COG3396	Phenylacetate-CoA oxygenase
DKQ63_RS11935	COG3460	Phenylacetate-CoA oxygenase
DKQ63_RS11940	COG3396	Phenylacetate-CoA oxygenase
DKQ63_RS11945	COG1012	belongs to the aldehyde dehydrogenase family
DKQ63_RS11945	COG2030	dehydratase
DKQ63_RS11950	COG3733	amine oxidase
DKQ63_RS11955	COG1012	belongs to the aldehyde dehydrogenase family
DKQ63_RS11960	COG2207	Transcriptional regulator
DKQ63_RS11965	COG3784	Protein of unknown function (DUF1318)
DKQ63_RS11975	COG2911	Protein conserved in bacteria
DKQ63_RS11980	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DKQ63_RS11985	COG3187	Heat shock protein
DKQ63_RS11990	COG3042	response to heat
DKQ63_RS11995	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
DKQ63_RS11995	COG1013	pyruvate-flavodoxin oxidoreductase activity
DKQ63_RS11995	COG0674	pyruvate-flavodoxin oxidoreductase activity
DKQ63_RS11995	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DKQ63_RS12005	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
DKQ63_RS12010	COG0589	response to stress
DKQ63_RS12050	COG1475	DNA binding
DKQ63_RS12060	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DKQ63_RS12070	COG3772	lysozyme
DKQ63_RS12085	COG3064	Membrane
DKQ63_RS12115	COG2814	Major facilitator Superfamily
DKQ63_RS12120	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
DKQ63_RS12140	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DKQ63_RS12145	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS12160	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS12180	COG0582	viral genome integration into host DNA
DKQ63_RS12190	COG0513	Belongs to the DEAD box helicase family
DKQ63_RS12205	COG3706	GGDEF domain
DKQ63_RS12210	COG2840	Smr protein MutS2
DKQ63_RS12220	COG0583	DNA-binding transcription factor activity
DKQ63_RS12225	COG1473	amidohydrolase
DKQ63_RS12230	COG1473	amidohydrolase
DKQ63_RS12240	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
DKQ63_RS12245	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DKQ63_RS12250	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DKQ63_RS12255	COG0589	response to stress
DKQ63_RS12260	COG3182	Iron-regulated membrane protein
DKQ63_RS12265	COG0668	transmembrane transport
DKQ63_RS12270	COG4166	transmembrane transport
DKQ63_RS12275	COG0583	DNA-binding transcription factor activity
DKQ63_RS12280	COG1073	alpha beta
DKQ63_RS12285	COG0702	epimerase
DKQ63_RS12290	COG2866	Carboxypeptidase
DKQ63_RS12295	COG4948	Mandelate Racemase Muconate Lactonizing
DKQ63_RS12300	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
DKQ63_RS12305	COG3283	Transcriptional regulator of aromatic amino acids metabolism
DKQ63_RS12315	COG3106	COG3106 Predicted ATPase
DKQ63_RS12320	COG1609	Transcriptional regulator
DKQ63_RS12325	COG3039	Transposase
DKQ63_RS12340	COG3842	ATPase activity
DKQ63_RS12345	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DKQ63_RS12350	COG1554	hydrolase, family 65, central catalytic
DKQ63_RS12355	COG0673	inositol 2-dehydrogenase activity
DKQ63_RS12360	COG1082	Xylose isomerase domain protein TIM barrel
DKQ63_RS12365	COG1063	alcohol dehydrogenase
DKQ63_RS12370	COG0395	ABC-type sugar transport system, permease component
DKQ63_RS12375	COG1175	transmembrane transport
DKQ63_RS12380	COG1653	transport
DKQ63_RS12385	COG0366	Alpha amylase catalytic
DKQ63_RS12390	COG0366	Alpha amylase catalytic
DKQ63_RS12395	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DKQ63_RS12405	COG1983	PspC domain protein
DKQ63_RS12415	COG1842	Phage shock protein A
DKQ63_RS12420	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
DKQ63_RS12425	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DKQ63_RS12430	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DKQ63_RS12435	COG1012	belongs to the aldehyde dehydrogenase family
DKQ63_RS12445	COG1396	sequence-specific DNA binding
DKQ63_RS12445	COG1917	Cupin 2, conserved barrel domain protein
DKQ63_RS12450	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DKQ63_RS12455	COG0174	glutamine synthetase
DKQ63_RS12460	COG0531	amino acid
DKQ63_RS12475	COG4166	transmembrane transport
DKQ63_RS12480	COG4168	peptide transport system, permease
DKQ63_RS12485	COG4171	peptide transport system, permease
DKQ63_RS12490	COG4172	Belongs to the ABC transporter superfamily
DKQ63_RS12495	COG4172	Belongs to the ABC transporter superfamily
DKQ63_RS12500	COG2852	Protein conserved in bacteria
DKQ63_RS12505	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
DKQ63_RS12510	COG4950	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DKQ63_RS12510	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DKQ63_RS12525	COG5001	Diguanylate cyclase
DKQ63_RS12535	COG1349	DNA-binding transcription factor activity
DKQ63_RS12545	COG0023	Translation Initiation Factor
DKQ63_RS12555	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
DKQ63_RS12560	COG3771	Involved in the assembly of lipopolysaccharide (LPS)
DKQ63_RS12565	COG0671	phosphoesterase, PA-phosphatase related
DKQ63_RS12575	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DKQ63_RS12595	COG0583	DNA-binding transcription factor activity
DKQ63_RS12605	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DKQ63_RS12620	COG0616	signal peptide processing
DKQ63_RS12625	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS12630	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
DKQ63_RS12635	COG1187	pseudouridine synthase activity
DKQ63_RS12640	COG4907	membrane protein (DUF2207)
DKQ63_RS12645	COG0009	L-threonylcarbamoyladenylate synthase
DKQ63_RS12650	COG0613	PHP domain protein
DKQ63_RS12660	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DKQ63_RS12665	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DKQ63_RS12665	COG0512	Glutamine amidotransferase of anthranilate synthase
DKQ63_RS12670	COG0134	indole-3-glycerol-phosphate synthase activity
DKQ63_RS12670	COG0135	phosphoribosylanthranilate isomerase activity
DKQ63_RS12685	COG3729	General stress protein
DKQ63_RS12690	COG3685	Protein conserved in bacteria
DKQ63_RS12695	COG3685	Protein conserved in bacteria
DKQ63_RS12700	COG3047	cAMP biosynthetic process
DKQ63_RS12720	COG1607	acyl-coa hydrolase
DKQ63_RS12725	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
DKQ63_RS12730	COG2350	Protein conserved in bacteria
DKQ63_RS12735	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DKQ63_RS12755	COG4608	Belongs to the ABC transporter superfamily
DKQ63_RS12760	COG0444	Belongs to the ABC transporter superfamily
DKQ63_RS12765	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DKQ63_RS12770	COG0601	transmembrane transport
DKQ63_RS12775	COG4166	transmembrane transport
DKQ63_RS12785	COG2095	MarC family integral membrane protein
DKQ63_RS12790	COG1454	alcohol dehydrogenase
DKQ63_RS12790	COG1012	belongs to the aldehyde dehydrogenase family
DKQ63_RS12800	COG1435	thymidine kinase activity
DKQ63_RS12810	COG1210	Utp--glucose-1-phosphate uridylyltransferase
DKQ63_RS12815	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS12820	COG1752	Esterase of the alpha-beta hydrolase superfamily
DKQ63_RS12830	COG0788	formyltetrahydrofolate deformylase activity
DKQ63_RS12855	COG2181	nitrate reductase activity
DKQ63_RS12860	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
DKQ63_RS12865	COG1140	nitrate reductase beta subunit
DKQ63_RS12870	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
DKQ63_RS12875	COG2223	nitrite transmembrane transporter activity
DKQ63_RS12885	COG3850	Histidine kinase
DKQ63_RS12890	COG2197	response regulator
DKQ63_RS12895	COG4932	domain protein
DKQ63_RS12900	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
DKQ63_RS12905	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
DKQ63_RS12910	COG4572	Cation transport regulator
DKQ63_RS12915	COG0387	Pfam Sodium calcium exchanger
DKQ63_RS12945	COG2912	Transglutaminase-like superfamily
DKQ63_RS12950	COG3094	Invasion gene expression up-regulator, SirB
DKQ63_RS12955	COG2890	protein-(glutamine-N5) methyltransferase activity
DKQ63_RS12985	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DKQ63_RS12995	COG0659	secondary active sulfate transmembrane transporter activity
DKQ63_RS13010	COG0012	GTP binding
DKQ63_RS13025	COG3468	outer membrane autotransporter barrel domain protein
DKQ63_RS13030	COG3284	Transcriptional regulator
DKQ63_RS13035	COG2376	Dihydroxyacetone kinase
DKQ63_RS13040	COG1461	Dihydroxyacetone kinase
DKQ63_RS13045	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
DKQ63_RS13045	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DKQ63_RS13045	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS13070	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
DKQ63_RS13085	COG1619	proteins homologs of microcin C7 resistance protein MccF
DKQ63_RS13100	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DKQ63_RS13110	COG2719	SpoVR family
DKQ63_RS13125	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
DKQ63_RS13130	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DKQ63_RS13135	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DKQ63_RS13155	COG3677	Transposase
DKQ63_RS13155	COG1662	PFAM IS1 transposase
DKQ63_RS13170	COG0179	Fumarylacetoacetate (FAA) hydrolase
DKQ63_RS13200	COG2894	cell division
DKQ63_RS13285	COG0538	isocitrate dehydrogenase activity
DKQ63_RS13290	COG1187	pseudouridine synthase activity
DKQ63_RS13310	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
DKQ63_RS13320	COG2205	protein histidine kinase activity
DKQ63_RS13325	COG2850	peptidyl-arginine hydroxylation
DKQ63_RS13350	COG1177	transmembrane transport
DKQ63_RS13355	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
DKQ63_RS13365	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
DKQ63_RS13370	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DKQ63_RS13380	COG4591	ABC-type transport system involved in lipoprotein release permease component
DKQ63_RS13390	COG4591	ABC-type transport system involved in lipoprotein release permease component
DKQ63_RS13395	COG4763	Acyl-transferase
DKQ63_RS13400	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DKQ63_RS13405	COG1388	LysM domain
DKQ63_RS13405	COG1376	ErfK ybiS ycfS ynhG family protein
DKQ63_RS13415	COG1309	transcriptional regulator
DKQ63_RS13420	COG3134	Outer membrane lipoprotein
DKQ63_RS13430	COG1252	NADH dehydrogenase
DKQ63_RS13450	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
DKQ63_RS13455	COG5633	Lipoprotein
DKQ63_RS13460	COG0537	adenosine 5'-monophosphoramidase activity
DKQ63_RS13465	COG4773	Receptor
DKQ63_RS13470	COG1263	PTS System
DKQ63_RS13470	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKQ63_RS13475	COG0084	hydrolase, TatD family'
DKQ63_RS13480	COG0470	DNA polymerase III
DKQ63_RS13490	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DKQ63_RS13495	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DKQ63_RS13500	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DKQ63_RS13510	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS13515	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
DKQ63_RS13535	COG1399	metal-binding, possibly nucleic acid-binding protein
DKQ63_RS13540	COG0424	maF-like protein
DKQ63_RS13545	COG0564	pseudouridine synthase activity
DKQ63_RS13555	COG1530	ribonuclease E activity
DKQ63_RS13560	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
DKQ63_RS13565	COG1256	bacterial-type flagellum assembly
DKQ63_RS13570	COG3951	Flagellar rod assembly protein muramidase FlgJ
DKQ63_RS13570	COG1705	Flagellar rod assembly protein muramidase FlgJ
DKQ63_RS13585	COG4786	Flagellar basal body rod
DKQ63_RS13590	COG4787	bacterial-type flagellum-dependent cell motility
DKQ63_RS13595	COG1749	Flagellar hook protein flgE
DKQ63_RS13600	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
DKQ63_RS13605	COG1558	bacterial-type flagellum-dependent cell motility
DKQ63_RS13610	COG1815	bacterial-type flagellum-dependent cell motility
DKQ63_RS13615	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
DKQ63_RS13620	COG2747	anti-sigma28 factor FlgM
DKQ63_RS13625	COG3418	PFAM FlgN family protein
DKQ63_RS13630	COG0728	peptidoglycan biosynthetic process
DKQ63_RS13635	COG0673	inositol 2-dehydrogenase activity
DKQ63_RS13645	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
DKQ63_RS13655	COG2999	glutathione oxidoreductase activity
DKQ63_RS13695	COG3038	cytochrome b561
DKQ63_RS13700	COG2353	YceI-like domain
DKQ63_RS13710	COG1560	Kdo2-lipid A biosynthetic process
DKQ63_RS13725	COG5645	(Lipo)protein
DKQ63_RS13730	COG2943	transferase activity, transferring hexosyl groups
DKQ63_RS13755	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DKQ63_RS13760	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
DKQ63_RS13795	COG2197	response regulator
DKQ63_RS13810	COG1462	curli production assembly transport component CsgG
DKQ63_RS13820	COG3381	protein complex oligomerization
DKQ63_RS13845	COG1702	phosphate starvation-inducible protein PhoH
DKQ63_RS13850	COG2837	iron assimilation
DKQ63_RS13855	COG2822	iron ion transport
DKQ63_RS13875	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DKQ63_RS13890	COG0506	proline dehydrogenase activity
DKQ63_RS13890	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DKQ63_RS13890	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DKQ63_RS13895	COG1309	transcriptional regulator
DKQ63_RS13930	COG2233	PERMEase
DKQ63_RS13935	COG3729	General stress protein
DKQ63_RS13975	COG3381	protein complex oligomerization
DKQ63_RS13980	COG0243	molybdopterin cofactor binding
DKQ63_RS13985	COG3005	denitrification pathway
DKQ63_RS13990	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS13995	COG1879	ABC-type sugar transport system periplasmic component
DKQ63_RS14000	COG0784	Response regulator, receiver
DKQ63_RS14000	COG2198	Histidine kinase
DKQ63_RS14000	COG2205	protein histidine kinase activity
DKQ63_RS14005	COG0348	domain, Protein
DKQ63_RS14025	COG1278	Cold shock
DKQ63_RS14030	COG1278	Cold shock
DKQ63_RS14050	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DKQ63_RS14055	COG3206	protein involved in exopolysaccharide biosynthesis
DKQ63_RS14055	COG0489	protein tyrosine kinase activity
DKQ63_RS14070	COG1294	oxidase, subunit
DKQ63_RS14075	COG1271	oxidase subunit
DKQ63_RS14080	COG1773	rubredoxin
DKQ63_RS14085	COG1999	signal sequence binding
DKQ63_RS14090	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
DKQ63_RS14095	COG1969	Ni Fe-hydrogenase, b-type cytochrome subunit
DKQ63_RS14100	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
DKQ63_RS14105	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
DKQ63_RS14115	COG0670	Belongs to the BI1 family
DKQ63_RS14120	COG2920	part of a sulfur-relay system
DKQ63_RS14125	COG1254	Belongs to the acylphosphatase family
DKQ63_RS14140	COG1832	CoA-binding protein
DKQ63_RS14155	COG0210	DNA helicase
DKQ63_RS14160	COG3304	Inner membrane component domain
DKQ63_RS14165	COG1289	transmembrane transporter activity
DKQ63_RS14170	COG3070	regulator of competence-specific genes
DKQ63_RS14185	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DKQ63_RS14185	COG2885	chlorophyll binding
DKQ63_RS14195	COG1067	ATP-dependent peptidase activity
DKQ63_RS14205	COG3130	regulation of translation
DKQ63_RS14210	COG3009	Protein conserved in bacteria
DKQ63_RS14215	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DKQ63_RS14215	COG3008	intermembrane lipid transfer
DKQ63_RS14220	COG2995	paraquat-inducible protein a
DKQ63_RS14225	COG0488	(ABC) transporter
DKQ63_RS14235	COG0633	Ferredoxin
DKQ63_RS14235	COG3217	Mosc domain protein beta barrel domain protein
DKQ63_RS14250	COG3121	Chaperone
DKQ63_RS14255	COG3539	Fimbrial protein
DKQ63_RS14260	COG3539	Fimbrial protein
DKQ63_RS14265	COG3539	Fimbrial protein
DKQ63_RS14285	COG3121	Chaperone
DKQ63_RS14290	COG3539	Fimbrial protein
DKQ63_RS14300	COG0431	NADPH-dependent FMN reductase
DKQ63_RS14305	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DKQ63_RS14315	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DKQ63_RS14320	COG1116	anion transmembrane transporter activity
DKQ63_RS14325	COG0308	aminopeptidase N
DKQ63_RS14350	COG1448	Aminotransferase
DKQ63_RS14355	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DKQ63_RS14360	COG3108	Peptidase M15
DKQ63_RS14370	COG2989	Protein conserved in bacteria
DKQ63_RS14380	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
DKQ63_RS14390	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DKQ63_RS14395	COG1434	Gram-negative-bacterium-type cell wall biogenesis
DKQ63_RS14400	COG3173	Aminoglycoside phosphotransferase
DKQ63_RS14415	COG3214	Protein conserved in bacteria
DKQ63_RS14420	COG1663	tetraacyldisaccharide 4'-kinase activity
DKQ63_RS14425	COG1132	(ABC) transporter
DKQ63_RS14430	COG0658	competence protein
DKQ63_RS14430	COG2333	competence protein COMEC
DKQ63_RS14450	COG0539	negative regulation of cytoplasmic translation
DKQ63_RS14460	COG0501	Belongs to the peptidase M48B family
DKQ63_RS14475	COG2323	membrane
DKQ63_RS14480	COG1944	ATP diphosphatase activity
DKQ63_RS14485	COG2116	formate transmembrane transporter activity
DKQ63_RS14490	COG1882	Formate acetyltransferase
DKQ63_RS14495	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DKQ63_RS14500	COG2249	NAD(P)H dehydrogenase (quinone) activity
DKQ63_RS14505	COG0583	DNA-binding transcription factor activity
DKQ63_RS14510	COG0531	amino acid
DKQ63_RS14535	COG3302	dmso reductase anchor subunit
DKQ63_RS14540	COG0437	4 iron, 4 sulfur cluster binding
DKQ63_RS14545	COG0243	molybdopterin cofactor binding
DKQ63_RS14555	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DKQ63_RS14565	COG1674	ftsk spoiiie
DKQ63_RS14565	COG1178	ABC-type Fe3 transport system permease component
DKQ63_RS14570	COG1522	sequence-specific DNA binding
DKQ63_RS14580	COG0492	ferredoxin-NADP+ reductase activity
DKQ63_RS14585	COG4988	ABC transporter
DKQ63_RS14590	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
DKQ63_RS14615	COG0542	response to heat
DKQ63_RS14625	COG1278	Cold shock
DKQ63_RS14630	COG1136	(ABC) transporter
DKQ63_RS14630	COG0577	efflux transmembrane transporter activity
DKQ63_RS14635	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKQ63_RS14640	COG2990	Protein conserved in bacteria
DKQ63_RS14645	COG3593	DNA synthesis involved in DNA repair
DKQ63_RS14660	COG2431	L-lysine efflux transmembrane transporter activity
DKQ63_RS14670	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKQ63_RS14675	COG0028	Belongs to the TPP enzyme family
DKQ63_RS14680	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
DKQ63_RS14685	COG0702	epimerase
DKQ63_RS14690	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DKQ63_RS14695	COG3023	N-Acetylmuramoyl-L-alanine amidase
DKQ63_RS14710	COG1126	abc transporter atp-binding protein
DKQ63_RS14715	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKQ63_RS14720	COG4215	(ABC) transporter
DKQ63_RS14725	COG4160	amino acid transport
DKQ63_RS14730	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKQ63_RS14745	COG1177	transmembrane transport
DKQ63_RS14750	COG1176	ABC-type spermidine putrescine transport system, permease component I
DKQ63_RS14755	COG3842	ATPase activity
DKQ63_RS14760	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
DKQ63_RS14780	COG0778	Nitroreductase
DKQ63_RS14790	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DKQ63_RS14805	COG3226	Transcriptional regulator
DKQ63_RS14810	COG0738	Major facilitator superfamily
DKQ63_RS14815	COG0561	phosphatase activity
DKQ63_RS14825	COG2814	Major facilitator Superfamily
DKQ63_RS14830	COG0671	phosphoesterase, PA-phosphatase related
DKQ63_RS14835	COG1349	DNA-binding transcription factor activity
DKQ63_RS14840	COG1686	Belongs to the peptidase S11 family
DKQ63_RS14845	COG0625	glutathione transferase activity
DKQ63_RS14850	COG2133	pyrroloquinoline quinone binding
DKQ63_RS14865	COG2199	diguanylate cyclase activity
DKQ63_RS14870	COG2200	EAL domain
DKQ63_RS14875	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DKQ63_RS14885	COG0747	negative chemotaxis
DKQ63_RS14895	COG1446	asparaginase
DKQ63_RS14900	COG0303	'Molybdopterin
DKQ63_RS14905	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
DKQ63_RS14910	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DKQ63_RS14915	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DKQ63_RS14920	COG1882	Formate acetyltransferase
DKQ63_RS14925	COG0561	phosphatase activity
DKQ63_RS14935	COG0488	(ABC) transporter
DKQ63_RS14940	COG1376	ErfK ybiS ycfS ynhG family protein
DKQ63_RS14945	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
DKQ63_RS14950	COG1321	iron dependent repressor
DKQ63_RS14960	COG2194	sulfuric ester hydrolase activity
DKQ63_RS14965	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
DKQ63_RS14970	COG5006	permease, DMT superfamily
DKQ63_RS15005	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKQ63_RS15010	COG0765	amino acid transport
DKQ63_RS15015	COG1126	abc transporter atp-binding protein
DKQ63_RS15020	COG0668	transmembrane transport
DKQ63_RS15035	COG4774	siderophore transport
DKQ63_RS15045	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DKQ63_RS15055	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
DKQ63_RS15060	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DKQ63_RS15065	COG1199	ATP-dependent helicase activity
DKQ63_RS15075	COG3236	hydrolase activity, hydrolyzing N-glycosyl compounds
DKQ63_RS15080	COG0513	Belongs to the DEAD box helicase family
DKQ63_RS15085	COG1309	transcriptional regulator
DKQ63_RS15095	COG1131	(ABC) transporter
DKQ63_RS15100	COG0842	Transport permease protein
DKQ63_RS15105	COG0842	Transport permease protein
DKQ63_RS15115	COG3568	Endonuclease Exonuclease Phosphatase
DKQ63_RS15120	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DKQ63_RS15125	COG0392	lysyltransferase activity
DKQ63_RS15130	COG0670	Belongs to the BI1 family
DKQ63_RS15135	COG0670	Belongs to the BI1 family
DKQ63_RS15140	COG0314	molybdopterin synthase activity
DKQ63_RS15145	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
DKQ63_RS15155	COG0521	Mo-molybdopterin cofactor biosynthetic process
DKQ63_RS15165	COG0391	Required for morphogenesis under gluconeogenic growth conditions
DKQ63_RS15175	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
DKQ63_RS15180	COG2226	methyltransferase
DKQ63_RS15195	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
DKQ63_RS15200	COG1881	PFAM PEBP family protein
DKQ63_RS15210	COG2199	diguanylate cyclase activity
DKQ63_RS15215	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
DKQ63_RS15220	COG5301	cellulose 1,4-beta-cellobiosidase activity
DKQ63_RS15255	COG1196	nuclear chromosome segregation
DKQ63_RS15305	COG1030	water channel activity
DKQ63_RS15325	COG4220	transposase activity
DKQ63_RS15340	COG5562	phage envelope protein
DKQ63_RS15350	COG3646	Phage regulatory protein
DKQ63_RS15365	COG3772	lysozyme
DKQ63_RS15505	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DKQ63_RS15545	COG0582	viral genome integration into host DNA
DKQ63_RS15550	COG4677	pectinesterase activity
DKQ63_RS15555	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DKQ63_RS15560	COG0471	metal ion transport
DKQ63_RS15565	COG2828	Protein conserved in bacteria
DKQ63_RS15570	COG0583	DNA-binding transcription factor activity
DKQ63_RS15580	COG0561	phosphatase activity
DKQ63_RS15585	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
DKQ63_RS15590	COG4149	molybdate abc transporter
DKQ63_RS15595	COG0725	ABC transporter, periplasmic molybdate-binding protein
DKQ63_RS15610	COG3585	molybdate ion transport
DKQ63_RS15610	COG2005	Transcriptional regulator
DKQ63_RS15615	COG1119	ATPase activity
DKQ63_RS15620	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DKQ63_RS15625	COG1085	galactose-1-phosphate uridylyltransferase
DKQ63_RS15635	COG2017	converts alpha-aldose to the beta-anomer
DKQ63_RS15645	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DKQ63_RS15660	COG1230	cation diffusion facilitator family transporter
DKQ63_RS15665	COG3201	nicotinamide mononucleotide transporter
DKQ63_RS15705	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
DKQ63_RS15710	COG2885	chlorophyll binding
DKQ63_RS15720	COG3064	Membrane
DKQ63_RS15725	COG0848	biopolymer transport protein
DKQ63_RS15730	COG0811	peptide transport
DKQ63_RS15735	COG0824	Thioesterase
DKQ63_RS15740	COG3790	cyd operon protein YbgE
DKQ63_RS15745	COG4890	Cyd operon protein YbgT
DKQ63_RS15750	COG1294	oxidase, subunit
DKQ63_RS15755	COG1271	oxidase subunit
DKQ63_RS15765	COG0383	alpha-mannosidase activity
DKQ63_RS15785	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKQ63_RS15785	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKQ63_RS15785	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS15790	COG2188	Transcriptional regulator
DKQ63_RS15795	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DKQ63_RS15805	COG0508	dehydrogenase complex catalyzes the overall conversion of
DKQ63_RS15810	COG0567	Dehydrogenase, E1 component
DKQ63_RS15815	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DKQ63_RS15820	COG1053	succinate dehydrogenase
DKQ63_RS15825	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DKQ63_RS15830	COG2009	succinate dehydrogenase
DKQ63_RS15845	COG0372	Belongs to the citrate synthase family
DKQ63_RS15850	COG3539	Fimbrial protein
DKQ63_RS15860	COG3121	Chaperone
DKQ63_RS15865	COG3539	Fimbrial protein
DKQ63_RS15870	COG3180	Ammonia monooxygenase
DKQ63_RS15885	COG1984	allophanate hydrolase subunit 2
DKQ63_RS15890	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
DKQ63_RS15895	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DKQ63_RS15900	COG3104	oligopeptide transport
DKQ63_RS15905	COG0415	Belongs to the DNA photolyase family
DKQ63_RS15910	COG3272	Protein of unknown function (DUF1722)
DKQ63_RS15940	COG3209	COG3209 Rhs family protein
DKQ63_RS15970	COG2205	protein histidine kinase activity
DKQ63_RS15975	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS15990	COG1982	Orn Lys Arg decarboxylase major
DKQ63_RS15995	COG0531	amino acid
DKQ63_RS16015	COG0033	Phosphoglucomutase
DKQ63_RS16020	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
DKQ63_RS16025	COG0596	Alpha beta hydrolase
DKQ63_RS16035	COG0716	FMN binding
DKQ63_RS16045	COG0735	belongs to the Fur family
DKQ63_RS16065	COG2190	(PTS) system
DKQ63_RS16065	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKQ63_RS16065	COG1263	PTS System
DKQ63_RS16075	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DKQ63_RS16080	COG1846	Transcriptional regulator
DKQ63_RS16080	COG1940	carbohydrate kinase activity
DKQ63_RS16085	COG0647	UMP catabolic process
DKQ63_RS16095	COG0367	asparagine synthase
DKQ63_RS16135	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DKQ63_RS16145	COG1702	phosphate starvation-inducible protein PhoH
DKQ63_RS16155	COG4535	Mg2 and Co2 transporter CorC
DKQ63_RS16160	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DKQ63_RS16165	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DKQ63_RS16170	COG0765	amino acid transport
DKQ63_RS16175	COG0765	amino acid transport
DKQ63_RS16180	COG1126	abc transporter atp-binding protein
DKQ63_RS16190	COG0443	Heat shock 70 kDa protein
DKQ63_RS16195	COG2214	Heat shock protein DnaJ domain protein
DKQ63_RS16200	COG2214	Heat shock protein DnaJ domain protein
DKQ63_RS16210	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
DKQ63_RS16225	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
DKQ63_RS16230	COG2888	peptidyl-tyrosine sulfation
DKQ63_RS16245	COG1466	dna polymerase III delta subunit
DKQ63_RS16255	COG0406	alpha-ribazole phosphatase activity
DKQ63_RS16260	COG0799	negative regulation of ribosome biogenesis
DKQ63_RS16270	COG0768	penicillin binding
DKQ63_RS16275	COG0772	Belongs to the SEDS family
DKQ63_RS16280	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DKQ63_RS16285	COG1686	Belongs to the peptidase S11 family
DKQ63_RS16310	COG0583	DNA-binding transcription factor activity
DKQ63_RS16325	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DKQ63_RS16330	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DKQ63_RS16355	COG3069	C4-dicarboxylate transmembrane transporter activity
DKQ63_RS16360	COG4565	transcriptional regulatory protein
DKQ63_RS16365	COG3290	protein histidine kinase activity
DKQ63_RS16370	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
DKQ63_RS16380	COG2301	Belongs to the HpcH HpaI aldolase family
DKQ63_RS16385	COG3051	citrate lyase alpha subunit
DKQ63_RS16400	COG0471	metal ion transport
DKQ63_RS16405	COG3719	Belongs to the RNase T2 family
DKQ63_RS16415	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DKQ63_RS16425	COG1063	alcohol dehydrogenase
DKQ63_RS16430	COG0589	response to stress
DKQ63_RS16435	COG3634	alkyl hydroperoxide reductase activity
DKQ63_RS16440	COG0450	alkyl hydroperoxide reductase
DKQ63_RS16445	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DKQ63_RS16455	COG0583	DNA-binding transcription factor activity
DKQ63_RS16460	COG3969	phosphoadenosine phosphosulfate
DKQ63_RS16465	COG1475	DNA binding
DKQ63_RS16470	COG0436	Aminotransferase
DKQ63_RS16475	COG0371	Dehydrogenase
DKQ63_RS16480	COG2879	small protein
DKQ63_RS16485	COG1966	Carbon starvation protein
DKQ63_RS16490	COG2050	protein possibly involved in aromatic compounds catabolism
DKQ63_RS16495	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS16500	COG3433	isochorismatase activity
DKQ63_RS16500	COG1535	isochorismatase
DKQ63_RS16505	COG1021	2,3-dihydroxybenzoate-AMP ligase
DKQ63_RS16510	COG1169	isochorismate synthase
DKQ63_RS16520	COG4592	Periplasmic binding protein
DKQ63_RS16530	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKQ63_RS16535	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKQ63_RS16540	COG1120	ATPase activity
DKQ63_RS16545	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
DKQ63_RS16550	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
DKQ63_RS16550	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DKQ63_RS16555	COG3251	PFAM MbtH domain protein
DKQ63_RS16560	COG2382	esterase
DKQ63_RS16565	COG4771	TonB-dependent receptor
DKQ63_RS16570	COG2977	Belongs to the P-Pant transferase superfamily
DKQ63_RS16575	COG3385	transposase activity
DKQ63_RS16605	COG2315	Protein conserved in bacteria
DKQ63_RS16610	COG0778	Nitroreductase
DKQ63_RS16615	COG0668	transmembrane transport
DKQ63_RS16620	COG1113	amino acid transport
DKQ63_RS16625	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DKQ63_RS16630	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKQ63_RS16635	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKQ63_RS16640	COG1538	Outer membrane efflux protein
DKQ63_RS16650	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS16655	COG5002	protein histidine kinase activity
DKQ63_RS16685	COG2207	Transcriptional regulator
DKQ63_RS16700	COG2197	response regulator
DKQ63_RS16705	COG3539	Fimbrial protein
DKQ63_RS16725	COG3539	Fimbrial protein
DKQ63_RS16750	COG2501	S4 domain
DKQ63_RS16755	COG1988	membrane-bound metal-dependent
DKQ63_RS16765	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
DKQ63_RS16780	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
DKQ63_RS16785	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
DKQ63_RS16790	COG0549	Belongs to the carbamate kinase family
DKQ63_RS16800	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DKQ63_RS16805	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
DKQ63_RS16810	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DKQ63_RS16815	COG3257	ureidoglycine aminohydrolase activity
DKQ63_RS16820	COG1929	Belongs to the glycerate kinase type-1 family
DKQ63_RS16825	COG2233	PERMEase
DKQ63_RS16835	COG1953	Uracil, thiamine, allantoin
DKQ63_RS16845	COG2084	Dehydrogenase
DKQ63_RS16850	COG3622	Belongs to the hyi family
DKQ63_RS16865	COG3960	tartronate-semialdehyde synthase activity
DKQ63_RS16870	COG1414	Transcriptional regulator
DKQ63_RS16880	COG0583	DNA-binding transcription factor activity
DKQ63_RS16915	COG3209	COG3209 Rhs family protein
DKQ63_RS16920	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
DKQ63_RS16925	COG4181	ATPase activity
DKQ63_RS16930	COG2755	lipolytic protein G-D-S-L family
DKQ63_RS16935	COG0300	oxidoreductase activity
DKQ63_RS16940	COG3118	belongs to the thioredoxin family
DKQ63_RS16945	COG0390	transport system, permease component
DKQ63_RS16950	COG4619	ABC transporter
DKQ63_RS16955	COG0330	HflC and HflK could
DKQ63_RS16960	COG1585	Membrane protein implicated in regulation of membrane protease activity
DKQ63_RS16965	COG0789	Transcriptional regulator
DKQ63_RS16970	COG0531	amino acid
DKQ63_RS16975	COG2066	Belongs to the glutaminase family
DKQ63_RS16980	COG2217	Heavy metal translocating P-type atpase
DKQ63_RS16985	COG3093	addiction module antidote protein HigA
DKQ63_RS16995	COG3735	TraB family
DKQ63_RS17005	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DKQ63_RS17010	COG0737	Belongs to the 5'-nucleotidase family
DKQ63_RS17020	COG2223	nitrite transmembrane transporter activity
DKQ63_RS17025	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DKQ63_RS17025	COG4651	solute:proton antiporter activity
DKQ63_RS17030	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKQ63_RS17070	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DKQ63_RS17085	COG2832	Protein of unknown function (DUF454)
DKQ63_RS17090	COG3923	Primosomal replication protein n
DKQ63_RS17100	COG3264	Mechanosensitive ion channel
DKQ63_RS17100	COG1196	nuclear chromosome segregation
DKQ63_RS17110	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS17120	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DKQ63_RS17125	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DKQ63_RS17140	COG0110	maltose O-acetyltransferase activity
DKQ63_RS17150	COG4943	cyclic-guanylate-specific phosphodiesterase activity
DKQ63_RS17155	COG5507	3-demethylubiquinone-9 3-methyltransferase
DKQ63_RS17165	COG3695	enzyme binding
DKQ63_RS17170	COG3126	Type III secretion system lipoprotein chaperone (YscW)
DKQ63_RS17175	COG1946	Acyl-CoA thioesterase
DKQ63_RS17180	COG0004	ammonium transporteR
DKQ63_RS17185	COG0347	Belongs to the P(II) protein family
DKQ63_RS17190	COG1132	(ABC) transporter
DKQ63_RS17195	COG1132	(ABC) transporter
DKQ63_RS17200	COG1522	sequence-specific DNA binding
DKQ63_RS17210	COG4533	DNA binding
DKQ63_RS17220	COG0824	Thioesterase
DKQ63_RS17225	COG1555	photosystem II stabilization
DKQ63_RS17230	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DKQ63_RS17235	COG0776	regulation of translation
DKQ63_RS17240	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DKQ63_RS17265	COG0271	Belongs to the BolA IbaG family
DKQ63_RS17275	COG3056	Lipoprotein
DKQ63_RS17280	COG2223	nitrite transmembrane transporter activity
DKQ63_RS17285	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DKQ63_RS17290	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DKQ63_RS17295	COG1845	cytochrome c oxidase, subunit III
DKQ63_RS17300	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
DKQ63_RS17310	COG2814	Major facilitator Superfamily
DKQ63_RS17320	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DKQ63_RS17325	COG0693	protein deglycase activity
DKQ63_RS17340	COG0142	geranyltranstransferase activity
DKQ63_RS17350	COG0667	Aldo Keto reductase
DKQ63_RS17355	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DKQ63_RS17360	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
DKQ63_RS17375	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DKQ63_RS17375	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DKQ63_RS17385	COG4238	major outer membrane lipoprotein
DKQ63_RS17395	COG3248	Nucleoside-binding outer membrane protein
DKQ63_RS17400	COG1403	HNH endonuclease
DKQ63_RS17405	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DKQ63_RS17410	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
DKQ63_RS17415	COG1862	Preprotein translocase
DKQ63_RS17435	COG0366	Alpha amylase catalytic
DKQ63_RS17440	COG1113	amino acid transport
DKQ63_RS17445	COG1114	Component of the transport system for branched-chain amino acids
DKQ63_RS17450	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS17460	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS17465	COG0420	3'-5' exonuclease activity
DKQ63_RS17470	COG0419	ATPase involved in DNA repair
DKQ63_RS17475	COG2814	Major facilitator Superfamily
DKQ63_RS17480	COG1940	carbohydrate kinase activity
DKQ63_RS17505	COG4126	flavin adenine dinucleotide binding
DKQ63_RS17530	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
DKQ63_RS17535	COG3706	GGDEF domain
DKQ63_RS17545	COG1785	Belongs to the alkaline phosphatase family
DKQ63_RS17560	COG1181	Belongs to the D-alanine--D-alanine ligase family
DKQ63_RS17585	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
DKQ63_RS17595	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DKQ63_RS17600	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DKQ63_RS17630	COG0113	porphobilinogen synthase activity
DKQ63_RS17635	COG2175	clavaminate synthase activity
DKQ63_RS17640	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DKQ63_RS17645	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
DKQ63_RS17650	COG4521	taurine ABC transporter
DKQ63_RS17660	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
DKQ63_RS17665	COG1215	transferase activity, transferring glycosyl groups
DKQ63_RS17700	COG3122	Protein conserved in bacteria
DKQ63_RS17720	COG3971	2-oxopent-4-enoate hydratase activity
DKQ63_RS17740	COG1414	Transcriptional regulator
DKQ63_RS17745	COG1609	Transcriptional regulator
DKQ63_RS17755	COG3250	beta-galactosidase activity
DKQ63_RS17760	COG2223	nitrite transmembrane transporter activity
DKQ63_RS17765	COG0110	maltose O-acetyltransferase activity
DKQ63_RS17770	COG2807	transmembrane transport
DKQ63_RS17780	COG0288	reversible hydration of carbon dioxide
DKQ63_RS17785	COG0583	DNA-binding transcription factor activity
DKQ63_RS17790	COG0402	S-adenosylhomocysteine deaminase activity
DKQ63_RS17795	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
DKQ63_RS17800	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DKQ63_RS17805	COG2079	MmgE PrpD family protein
DKQ63_RS17810	COG0372	Belongs to the citrate synthase family
DKQ63_RS17815	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
DKQ63_RS17820	COG3829	transcription factor binding
DKQ63_RS17840	COG0666	response to abiotic stimulus
DKQ63_RS17855	COG0583	DNA-binding transcription factor activity
DKQ63_RS17860	COG2200	EAL domain
DKQ63_RS17860	COG2771	luxR family
DKQ63_RS17875	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DKQ63_RS17880	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS17915	COG1556	Lactate utilization protein
DKQ63_RS17920	COG1139	Iron-sulfur cluster binding protein
DKQ63_RS17925	COG0247	lactate metabolic process
DKQ63_RS18005	COG3188	usher protein
DKQ63_RS18015	COG3121	Chaperone
DKQ63_RS18020	COG0727	PFAM Uncharacterised protein family (UPF0153)
DKQ63_RS18040	COG2080	2 iron, 2 sulfur cluster binding
DKQ63_RS18045	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
DKQ63_RS18050	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DKQ63_RS18055	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
DKQ63_RS18060	COG0583	DNA-binding transcription factor activity
DKQ63_RS18140	COG0582	viral genome integration into host DNA
DKQ63_RS18160	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
DKQ63_RS18180	COG2195	Cleaves the N-terminal amino acid of tripeptides
DKQ63_RS18185	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
DKQ63_RS18190	COG1690	Belongs to the RtcB family
DKQ63_RS18195	COG0454	-acetyltransferase
DKQ63_RS18205	COG2161	toxin-antitoxin pair type II binding
DKQ63_RS18225	COG1943	Transposase
DKQ63_RS18230	COG0791	NLP P60 protein
DKQ63_RS18235	COG3077	Addiction module antitoxin, RelB DinJ family
DKQ63_RS18245	COG3034	peptidoglycan biosynthetic process
DKQ63_RS18250	COG0121	glutamine amidotransferase
DKQ63_RS18260	COG1960	acyl-CoA dehydrogenase activity
DKQ63_RS18270	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DKQ63_RS18300	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DKQ63_RS18310	COG2226	methyltransferase
DKQ63_RS18320	COG1388	LysM domain
DKQ63_RS18320	COG0741	lytic transglycosylase activity
DKQ63_RS18325	COG2226	methyltransferase
DKQ63_RS18335	COG0583	DNA-binding transcription factor activity
DKQ63_RS18340	COG0656	L-ascorbic acid biosynthetic process
DKQ63_RS18380	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
DKQ63_RS18385	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DKQ63_RS18390	COG2011	ABC-type metal ion transport system permease component
DKQ63_RS18395	COG1464	Belongs to the NlpA lipoprotein family
DKQ63_RS18405	COG1720	tRNA m6t6A37 methyltransferase activity
DKQ63_RS18415	COG0791	NLP P60 protein
DKQ63_RS18420	COG3015	lipoprotein NlpE involved in copper resistance
DKQ63_RS18425	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
DKQ63_RS18430	COG4681	YaeQ
DKQ63_RS18440	COG4568	rho-dependent transcription termination
DKQ63_RS18445	COG0037	tRNA processing
DKQ63_RS18450	COG0346	lactoylglutathione lyase activity
DKQ63_RS18455	COG1982	Orn Lys Arg decarboxylase major
DKQ63_RS18465	COG0587	DNA-directed DNA polymerase activity
DKQ63_RS18490	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DKQ63_RS18495	COG2825	PFAM Outer membrane chaperone Skp (OmpH)
DKQ63_RS18505	COG0750	zinc metalloprotease
DKQ63_RS18510	COG0575	Belongs to the CDS family
DKQ63_RS18515	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DKQ63_RS18520	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DKQ63_RS18555	COG0024	Methionine aminopeptidase
DKQ63_RS18570	COG1408	metallophosphoesterase
DKQ63_RS18580	COG3835	regulator
DKQ63_RS18585	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DKQ63_RS18605	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DKQ63_RS18610	COG2860	membrane
DKQ63_RS18630	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DKQ63_RS18635	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DKQ63_RS18640	COG1120	ATPase activity
DKQ63_RS18645	COG4774	siderophore transport
DKQ63_RS18650	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DKQ63_RS18660	COG1643	Atp-dependent helicase
DKQ63_RS18665	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
DKQ63_RS18675	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DKQ63_RS18685	COG0617	tRNA 3'-terminal CCA addition
DKQ63_RS18690	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
DKQ63_RS18695	COG3539	Fimbrial protein
DKQ63_RS18700	COG3121	Chaperone
DKQ63_RS18705	COG3188	usher protein
DKQ63_RS18710	COG3539	Fimbrial protein
DKQ63_RS18715	COG3539	Fimbrial protein
DKQ63_RS18720	COG3539	Fimbrial protein
DKQ63_RS18735	COG3539	Fimbrial protein
DKQ63_RS18750	COG5464	transposase or invertase
DKQ63_RS18770	COG0726	polysaccharide deacetylase
DKQ63_RS18775	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS18780	COG0842	Transport permease protein
DKQ63_RS18785	COG1131	(ABC) transporter
DKQ63_RS18790	COG0288	reversible hydration of carbon dioxide
DKQ63_RS18795	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
DKQ63_RS18800	COG4993	Dehydrogenase
DKQ63_RS18805	COG2132	Multicopper oxidase
DKQ63_RS18830	COG1049	propionate catabolic process, 2-methylcitrate cycle
DKQ63_RS18840	COG3064	Membrane
DKQ63_RS18845	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DKQ63_RS18850	COG0508	dehydrogenase complex catalyzes the overall conversion of
DKQ63_RS18855	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
DKQ63_RS18865	COG2186	Transcriptional regulator
DKQ63_RS18870	COG1113	amino acid transport
DKQ63_RS18875	COG3725	Membrane protein required for beta-lactamase induction
DKQ63_RS18880	COG3023	N-Acetylmuramoyl-L-alanine amidase
DKQ63_RS18885	COG0157	Belongs to the NadC ModD family
DKQ63_RS18895	COG4969	Belongs to the N-Me-Phe pilin family
DKQ63_RS18900	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DKQ63_RS18905	COG1459	type II secretion system
DKQ63_RS18915	COG0237	dephospho-CoA kinase activity
DKQ63_RS18930	COG0494	nUDIX hydrolase
DKQ63_RS18950	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DKQ63_RS18955	COG0849	cell division
DKQ63_RS18960	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
DKQ63_RS18965	COG1181	Belongs to the D-alanine--D-alanine ligase family
DKQ63_RS18980	COG0772	Belongs to the SEDS family
DKQ63_RS18985	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DKQ63_RS18995	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DKQ63_RS19000	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DKQ63_RS19005	COG0768	penicillin binding
DKQ63_RS19010	COG3116	cell division
DKQ63_RS19020	COG2001	Belongs to the MraZ family
DKQ63_RS19030	COG1609	Transcriptional regulator
DKQ63_RS19040	COG0440	acetolactate synthase activity
DKQ63_RS19045	COG0028	Belongs to the TPP enzyme family
DKQ63_RS19050	COG0583	DNA-binding transcription factor activity
DKQ63_RS19065	COG0473	3-isopropylmalate dehydrogenase activity
DKQ63_RS19080	COG2814	Major facilitator Superfamily
DKQ63_RS19090	COG4533	DNA binding
DKQ63_RS19095	COG4143	(ABC) transporter
DKQ63_RS19100	COG1178	ABC-type Fe3 transport system permease component
DKQ63_RS19105	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
DKQ63_RS19110	COG0586	Pfam SNARE associated Golgi protein
DKQ63_RS19115	COG4977	sequence-specific DNA binding
DKQ63_RS19125	COG1069	ribulokinase activity
DKQ63_RS19130	COG2160	L-arabinose isomerase activity
DKQ63_RS19135	COG0235	Class ii aldolase
DKQ63_RS19140	COG0417	DNA replication proofreading
DKQ63_RS19150	COG0564	pseudouridine synthase activity
DKQ63_RS19160	COG1357	PFAM Pentapeptide repeats (8 copies)
DKQ63_RS19165	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
DKQ63_RS19170	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
DKQ63_RS19175	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DKQ63_RS19200	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
DKQ63_RS19220	COG2271	Major facilitator Superfamily
DKQ63_RS19225	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
DKQ63_RS19230	COG0644	oxidoreductase
DKQ63_RS19285	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DKQ63_RS19290	COG0505	Belongs to the CarA family
DKQ63_RS19315	COG1047	Peptidyl-prolyl cis-trans
DKQ63_RS19330	COG0196	riboflavin kinase activity
DKQ63_RS19370	COG0583	DNA-binding transcription factor activity
DKQ63_RS19385	COG3385	transposase activity
DKQ63_RS19405	COG4735	regulation of single-species biofilm formation
DKQ63_RS19410	COG1584	GPR1 FUN34 yaaH family protein
DKQ63_RS19415	COG0521	Mo-molybdopterin cofactor biosynthetic process
DKQ63_RS19425	COG1115	amino acid carrier protein
DKQ63_RS19440	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
DKQ63_RS19450	COG0460	homoserine dehydrogenase
DKQ63_RS19450	COG0527	aspartate kinase activity
DKQ63_RS19460	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
DKQ63_RS19470	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS19475	COG4452	Inner membrane protein CreD
DKQ63_RS19480	COG2205	protein histidine kinase activity
DKQ63_RS19485	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS19490	COG3045	CreA protein
DKQ63_RS19495	COG2207	Transcriptional regulator
DKQ63_RS19495	COG3708	Transcriptional regulator
DKQ63_RS19515	COG0741	lytic transglycosylase activity
DKQ63_RS19525	COG0488	(ABC) transporter
DKQ63_RS19530	COG3172	ATPase kinase involved in NAD metabolism
DKQ63_RS19530	COG1056	cytidyltransferase-related domain
DKQ63_RS19535	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
DKQ63_RS19540	COG0560	Phosphoserine phosphatase
DKQ63_RS19545	COG3726	membrane protein affecting hemolysin expression
DKQ63_RS19580	COG1328	CTP reductase activity
DKQ63_RS19585	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DKQ63_RS19595	COG0084	hydrolase, TatD family'
DKQ63_RS19600	COG4667	esterase of the alpha-beta hydrolase superfamily
DKQ63_RS19610	COG2823	Periplasmic or secreted lipoprotein
DKQ63_RS19620	COG1011	Hydrolase
DKQ63_RS19625	COG0456	acetyltransferase
DKQ63_RS19630	COG3050	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is
DKQ63_RS19650	COG4114	ferric iron reductase
DKQ63_RS19655	COG2197	response regulator
DKQ63_RS19660	COG2197	response regulator
DKQ63_RS19665	COG2966	Psort location CytoplasmicMembrane, score
DKQ63_RS19680	COG1484	DNA-dependent DNA replication
DKQ63_RS19695	COG1063	alcohol dehydrogenase
DKQ63_RS19700	COG3039	Transposase
DKQ63_RS19705	COG2271	Major facilitator Superfamily
DKQ63_RS19710	COG0840	transmembrane signaling receptor activity
DKQ63_RS19720	COG1966	Carbon starvation protein
DKQ63_RS19725	COG2879	small protein
DKQ63_RS19730	COG0523	cobalamin synthesis protein
DKQ63_RS19750	COG2814	Major facilitator Superfamily
DKQ63_RS19755	COG2733	membrane
DKQ63_RS19760	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
DKQ63_RS19765	COG1924	4 iron, 4 sulfur cluster binding
DKQ63_RS19780	COG0477	Major facilitator Superfamily
DKQ63_RS19795	COG0700	Nucleoside recognition
DKQ63_RS19800	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DKQ63_RS19805	COG0583	DNA-binding transcription factor activity
DKQ63_RS19825	COG2186	Transcriptional regulator
DKQ63_RS19835	COG0246	Mannitol dehydrogenase
DKQ63_RS19850	COG2610	gluconate transmembrane transporter activity
DKQ63_RS19910	COG0582	viral genome integration into host DNA
DKQ63_RS19920	COG1064	alcohol dehydrogenase
DKQ63_RS19925	COG3265	gluconokinase activity
DKQ63_RS19930	COG1063	alcohol dehydrogenase
DKQ63_RS19935	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS19940	COG2610	gluconate transmembrane transporter activity
DKQ63_RS19945	COG1609	Transcriptional regulator
DKQ63_RS19950	COG0433	COG0433 Predicted ATPase
DKQ63_RS19955	COG0795	lipopolysaccharide-transporting ATPase activity
DKQ63_RS19960	COG0795	lipopolysaccharide-transporting ATPase activity
DKQ63_RS19970	COG2927	DNA polymerase III (CHI subunit)
DKQ63_RS19975	COG0525	valine-tRNA ligase activity
DKQ63_RS19980	COG4269	membrane
DKQ63_RS19985	COG0456	acetyltransferase
DKQ63_RS19990	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
DKQ63_RS20010	COG2731	YhcH YjgK YiaL family protein
DKQ63_RS20015	COG1309	transcriptional regulator
DKQ63_RS20020	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS20025	COG0251	oxidation-reduction process
DKQ63_RS20050	COG0251	oxidation-reduction process
DKQ63_RS20055	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
DKQ63_RS20065	COG1609	Transcriptional regulator
DKQ63_RS20070	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DKQ63_RS20070	COG1263	PTS System
DKQ63_RS20075	COG0366	Alpha amylase catalytic
DKQ63_RS20080	COG1328	CTP reductase activity
DKQ63_RS20085	COG0602	queuosine metabolic process
DKQ63_RS20090	COG3783	Cytochrome b(562)
DKQ63_RS20095	COG0312	modulator of DNA gyrase
DKQ63_RS20105	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DKQ63_RS20115	COG1172	Belongs to the binding-protein-dependent transport system permease family
DKQ63_RS20120	COG1172	Belongs to the binding-protein-dependent transport system permease family
DKQ63_RS20125	COG1129	ABC transporter
DKQ63_RS20130	COG1879	ABC-type sugar transport system periplasmic component
DKQ63_RS20135	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DKQ63_RS20140	COG2105	PFAM AIG2 family protein
DKQ63_RS20145	COG2911	Protein conserved in bacteria
DKQ63_RS20150	COG0729	surface antigen
DKQ63_RS20165	COG1253	flavin adenine dinucleotide binding
DKQ63_RS20175	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
DKQ63_RS20180	COG1218	3'(2'),5'-bisphosphate nucleotidase
DKQ63_RS20200	COG1733	regulation of RNA biosynthetic process
DKQ63_RS20205	COG0702	epimerase
DKQ63_RS20210	COG0697	spore germination
DKQ63_RS20220	COG1113	amino acid transport
DKQ63_RS20225	COG0545	Peptidyl-prolyl cis-trans isomerase
DKQ63_RS20235	COG3061	Opacity-associated protein A
DKQ63_RS20240	COG1309	transcriptional regulator
DKQ63_RS20245	COG1028	Short-chain dehydrogenase reductase Sdr
DKQ63_RS20255	COG1024	Enoyl-CoA hydratase
DKQ63_RS20260	COG4670	ketone body catabolic process
DKQ63_RS20265	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
DKQ63_RS20270	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
DKQ63_RS20280	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DKQ63_RS20290	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DKQ63_RS20330	COG3414	Phosphotransferase system galactitol-specific IIB component
DKQ63_RS20335	COG3037	sugar-specific permease SgaT UlaA
DKQ63_RS20350	COG1073	alpha beta
DKQ63_RS20355	COG3650	response to hydrogen peroxide
DKQ63_RS20370	COG1960	acyl-CoA dehydrogenase activity
DKQ63_RS20375	COG0754	glutathionylspermidine amidase activity
DKQ63_RS20380	COG5463	Belongs to the UPF0441 family
DKQ63_RS20385	COG3766	membrane
DKQ63_RS20395	COG1842	Phage shock protein A
DKQ63_RS20400	COG3789	protein conserved in bacteria
DKQ63_RS20410	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DKQ63_RS20415	COG0557	exoribonuclease II activity
DKQ63_RS20430	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
DKQ63_RS20435	COG0330	HflC and HflK could
DKQ63_RS20440	COG0330	HflC and HflK could
DKQ63_RS20445	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DKQ63_RS20465	COG0860	N-Acetylmuramoyl-L-alanine amidase
DKQ63_RS20470	COG0802	atpase or kinase
DKQ63_RS20475	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DKQ63_RS20475	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DKQ63_RS20480	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
DKQ63_RS20520	COG3264	Mechanosensitive ion channel
DKQ63_RS20520	COG1511	domain protein
DKQ63_RS20535	COG0531	amino acid
DKQ63_RS20545	COG1053	succinate dehydrogenase
DKQ63_RS20550	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DKQ63_RS20565	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DKQ63_RS20570	COG3040	lipid binding
DKQ63_RS20575	COG2076	Multidrug Resistance protein
DKQ63_RS20580	COG5510	response to toxic substance
DKQ63_RS20585	COG5510	response to toxic substance
DKQ63_RS20595	COG1509	lysine 2,3-aminomutase activity
DKQ63_RS20620	COG0531	amino acid
DKQ63_RS20625	COG3030	protein affecting phage T7 exclusion by the F plasmid
DKQ63_RS20630	COG1027	Aspartate ammonia-lyase
DKQ63_RS20635	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
DKQ63_RS20645	COG4232	protein-disulfide reductase activity
DKQ63_RS20650	COG1309	transcriptional regulator
DKQ63_RS20665	COG3710	Transcriptional regulator
DKQ63_RS20675	COG0531	amino acid
DKQ63_RS20680	COG1982	Orn Lys Arg decarboxylase major
DKQ63_RS20685	COG3104	oligopeptide transport
DKQ63_RS20690	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
DKQ63_RS20710	COG2388	GCN5-related N-acetyl-transferase
DKQ63_RS20715	COG3592	Divergent 4Fe-4S mono-cluster
DKQ63_RS20720	COG3290	protein histidine kinase activity
DKQ63_RS20725	COG4565	transcriptional regulatory protein
DKQ63_RS20735	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
DKQ63_RS20740	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
DKQ63_RS20740	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
DKQ63_RS20745	COG3647	Membrane
DKQ63_RS20750	COG2211	Major facilitator Superfamily
DKQ63_RS20755	COG1486	melibiose metabolic process
DKQ63_RS20760	COG2169	Transcriptional regulator
DKQ63_RS20765	COG1982	Orn Lys Arg decarboxylase major
DKQ63_RS20770	COG2207	Transcriptional regulator
DKQ63_RS20775	COG0531	amino acid
DKQ63_RS20780	COG2194	sulfuric ester hydrolase activity
DKQ63_RS20785	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS20790	COG0642	Histidine kinase
DKQ63_RS20800	COG0477	Major facilitator Superfamily
DKQ63_RS20820	COG2824	Alkylphosphonate utilization operon protein PhnA
DKQ63_RS20825	COG2764	glyoxalase bleomycin resistance protein dioxygenase
DKQ63_RS20835	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
DKQ63_RS20845	COG2188	Transcriptional regulator
DKQ63_RS20850	COG3624	Phosphonate C-P lyase system protein PhnG
DKQ63_RS20855	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
DKQ63_RS20860	COG3626	phosphonate metabolism
DKQ63_RS20870	COG4107	phosphonate C-P lyase system protein PhnK
DKQ63_RS20875	COG4778	phosphonate C-P lyase system protein PhnL
DKQ63_RS20880	COG3454	Phosphonate metabolism
DKQ63_RS20885	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
DKQ63_RS20890	COG0456	acetyltransferase
DKQ63_RS20895	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DKQ63_RS20915	COG1566	PFAM secretion protein HlyD family protein
DKQ63_RS20920	COG1289	transmembrane transporter activity
DKQ63_RS20925	COG1538	Outer membrane efflux protein
DKQ63_RS20935	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
DKQ63_RS20940	COG1301	dicarboxylic acid transport
DKQ63_RS20950	COG4235	cytochrome complex assembly
DKQ63_RS20955	COG3088	subunit of a heme lyase
DKQ63_RS20960	COG1138	Cytochrome C-type biogenesis protein
DKQ63_RS20965	COG3301	Polysulphide reductase, NrfD
DKQ63_RS20970	COG0437	4 iron, 4 sulfur cluster binding
DKQ63_RS20975	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
DKQ63_RS20990	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DKQ63_RS20995	COG3162	membrane
DKQ63_RS21005	COG1357	PFAM Pentapeptide repeats (8 copies)
DKQ63_RS21010	COG0025	NhaP-type Na H and K H
DKQ63_RS21015	COG2252	PERMEase
DKQ63_RS21035	COG0789	Transcriptional regulator
DKQ63_RS21040	COG2207	Transcriptional regulator
DKQ63_RS21060	COG0629	single-stranded DNA binding
DKQ63_RS21065	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DKQ63_RS21070	COG2315	Protein conserved in bacteria
DKQ63_RS21075	COG0432	Pfam Uncharacterised protein family UPF0047
DKQ63_RS21080	COG3700	Belongs to the class B bacterial acid phosphatase family
DKQ63_RS21090	COG1448	Aminotransferase
DKQ63_RS21095	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DKQ63_RS21100	COG0305	Participates in initiation and elongation during chromosome replication
DKQ63_RS21105	COG0604	alcohol dehydrogenase
DKQ63_RS21115	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DKQ63_RS21125	COG0735	belongs to the Fur family
DKQ63_RS21130	COG3237	CsbD-like
DKQ63_RS21135	COG0534	Mate efflux family protein
DKQ63_RS21145	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
DKQ63_RS21170	COG1357	PFAM Pentapeptide repeats (8 copies)
DKQ63_RS21185	COG3842	ATPase activity
DKQ63_RS21195	COG2182	Extracellular solute-binding protein
DKQ63_RS21200	COG1175	transmembrane transport
DKQ63_RS21205	COG3833	ABC-type maltose transport systems, permease component
DKQ63_RS21210	COG2814	Major facilitator Superfamily
DKQ63_RS21210	COG0477	Major facilitator Superfamily
DKQ63_RS21225	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DKQ63_RS21255	COG0527	aspartate kinase activity
DKQ63_RS21265	COG1187	pseudouridine synthase activity
DKQ63_RS21275	COG1283	sodium-dependent phosphate transmembrane transporter activity
DKQ63_RS21280	COG0646	methionine synthase
DKQ63_RS21280	COG1410	methionine synthase
DKQ63_RS21285	COG1414	Transcriptional regulator
DKQ63_RS21300	COG2224	Isocitrate lyase
DKQ63_RS21305	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DKQ63_RS21315	COG0456	acetyltransferase
DKQ63_RS21355	COG0151	Belongs to the GarS family
DKQ63_RS21360	COG2204	response regulator
DKQ63_RS21365	COG4191	Histidine kinase
DKQ63_RS21375	COG3678	ATP-independent chaperone mediated protein folding
DKQ63_RS21390	COG3068	Protein conserved in bacteria
DKQ63_RS21425	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
DKQ63_RS21430	COG2104	thiamine diphosphate biosynthetic process
DKQ63_RS21440	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
DKQ63_RS21485	COG0250	Participates in transcription elongation, termination and antitermination
DKQ63_RS21490	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DKQ63_RS21535	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
DKQ63_RS21535	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
DKQ63_RS21540	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DKQ63_RS21570	COG4206	TonB-dependent receptor
DKQ63_RS21600	COG0583	DNA-binding transcription factor activity
DKQ63_RS21615	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DKQ63_RS21635	COG2194	sulfuric ester hydrolase activity
DKQ63_RS21640	COG2207	Transcriptional regulator
DKQ63_RS21645	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKQ63_RS21650	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
DKQ63_RS21655	COG1882	Formate acetyltransferase
DKQ63_RS21660	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKQ63_RS21665	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DKQ63_RS21670	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DKQ63_RS21670	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS21670	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
DKQ63_RS21675	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DKQ63_RS21680	COG0371	Dehydrogenase
DKQ63_RS21685	COG3738	Protein conserved in bacteria
DKQ63_RS21690	COG0697	spore germination
DKQ63_RS21700	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DKQ63_RS21705	COG0460	homoserine dehydrogenase
DKQ63_RS21705	COG0527	aspartate kinase activity
DKQ63_RS21710	COG0626	cystathionine gamma-synthase activity
DKQ63_RS21720	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
DKQ63_RS21730	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DKQ63_RS21735	COG1609	Transcriptional regulator
DKQ63_RS21740	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DKQ63_RS21755	COG1575	Belongs to the MenA family. Type 1 subfamily
DKQ63_RS21770	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DKQ63_RS21780	COG1494	fructose-1,6-bisphosphatase
DKQ63_RS21785	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DKQ63_RS21790	COG0589	response to stress
DKQ63_RS21795	COG3691	Protein conserved in bacteria
DKQ63_RS21800	COG3152	Membrane
DKQ63_RS21820	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
DKQ63_RS21835	COG3678	ATP-independent chaperone mediated protein folding
DKQ63_RS21840	COG0745	RESPONSE REGULATOR receiver
DKQ63_RS21845	COG2205	protein histidine kinase activity
DKQ63_RS21850	COG2258	MOSC domain
DKQ63_RS21865	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DKQ63_RS21925	COG0243	molybdopterin cofactor binding
DKQ63_RS21925	COG3383	formate dehydrogenase (NAD+) activity
DKQ63_RS21930	COG3383	formate dehydrogenase (NAD+) activity
DKQ63_RS21930	COG0243	molybdopterin cofactor binding
DKQ63_RS21935	COG0437	4 iron, 4 sulfur cluster binding
DKQ63_RS21940	COG2864	formate dehydrogenase
DKQ63_RS21950	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DKQ63_RS21955	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DKQ63_RS21960	COG0456	acetyltransferase
DKQ63_RS21975	COG1011	Hydrolase
DKQ63_RS21980	COG1349	DNA-binding transcription factor activity
DKQ63_RS21985	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKQ63_RS21990	COG2084	Dehydrogenase
DKQ63_RS21995	COG3684	Belongs to the aldolase LacD family
DKQ63_RS22000	COG2942	2-epimerase
DKQ63_RS22045	COG1082	Xylose isomerase domain protein TIM barrel
DKQ63_RS22050	COG2188	Transcriptional regulator
DKQ63_RS22055	COG1217	gtp-binding protein TYPA
DKQ63_RS22065	COG0174	glutamine synthetase
DKQ63_RS22070	COG3852	Histidine kinase
DKQ63_RS22075	COG2204	response regulator
DKQ63_RS22085	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DKQ63_RS22090	COG3078	GTPase activator activity
DKQ63_RS22100	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DKQ63_RS22100	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
DKQ63_RS22110	COG0204	Acyl-transferase
DKQ63_RS22115	COG5339	Protein conserved in bacteria
DKQ63_RS22120	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DKQ63_RS22125	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
DKQ63_RS22130	COG3084	Protein conserved in bacteria
DKQ63_RS22135	COG0746	molybdenum cofactor guanylyltransferase activity
DKQ63_RS22140	COG1763	Mo-molybdopterin cofactor biosynthetic process
DKQ63_RS22170	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
DKQ63_RS22175	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DKQ63_RS22180	COG1739	Uncharacterized protein family UPF0029
DKQ63_RS22200	COG0543	2 iron, 2 sulfur cluster binding
DKQ63_RS22210	COG0250	Participates in transcription elongation, termination and antitermination
DKQ63_RS22220	COG0805	protein transport
DKQ63_RS22230	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DKQ63_RS22240	COG3165	ubiquinone biosynthetic process from chorismate
DKQ63_RS22250	COG1322	Protein conserved in bacteria
DKQ63_RS22255	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
DKQ63_RS22260	COG0412	Dienelactone hydrolase
DKQ63_RS22270	COG0583	DNA-binding transcription factor activity
DKQ63_RS22275	COG0697	spore germination
DKQ63_RS22280	COG0561	phosphatase activity
DKQ63_RS22285	COG2267	carboxylic ester hydrolase activity
DKQ63_RS22290	COG1280	lysine exporter protein (LysE YggA)
DKQ63_RS22295	COG1280	lysine exporter protein (LysE YggA)
DKQ63_RS22300	COG0514	ATP-dependent DNA helicase (RecQ)
DKQ63_RS22305	COG2829	1-acyl-2-lysophosphatidylserine acylhydrolase activity
DKQ63_RS22310	COG2050	protein possibly involved in aromatic compounds catabolism
DKQ63_RS22330	COG0598	Magnesium transport protein CorA
DKQ63_RS22335	COG3698	Phosphodiester glycosidase
DKQ63_RS22340	COG0210	DNA helicase
DKQ63_RS22345	COG1011	Hydrolase
DKQ63_RS22355	COG3159	Protein conserved in bacteria
DKQ63_RS22365	COG5567	small periplasmic lipoprotein
DKQ63_RS22375	COG3072	Adenylate cyclase
DKQ63_RS22390	COG1587	Uroporphyrinogen-III synthase
DKQ63_RS22395	COG2959	enzyme of heme biosynthesis
DKQ63_RS22400	COG3071	HemY protein
DKQ63_RS22405	COG3119	arylsulfatase activity
DKQ63_RS22410	COG0641	radical SAM
DKQ63_RS22435	COG1113	amino acid transport
DKQ63_RS22455	COG2244	polysaccharide biosynthetic process
DKQ63_RS22460	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DKQ63_RS22465	COG0456	acetyltransferase
DKQ63_RS22470	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
DKQ63_RS22475	COG1088	dTDP-glucose 4,6-dehydratase activity
DKQ63_RS22480	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
DKQ63_RS22485	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DKQ63_RS22490	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
DKQ63_RS22495	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DKQ63_RS22505	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
DKQ63_RS22515	COG3118	belongs to the thioredoxin family
DKQ63_RS22535	COG0210	DNA helicase
DKQ63_RS22545	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DKQ63_RS22555	COG0583	DNA-binding transcription factor activity
DKQ63_RS22560	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DKQ63_RS22570	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DKQ63_RS22575	COG3978	acetolactate synthase activity
DKQ63_RS22600	COG0606	chelatase, subunit chli
DKQ63_RS22605	COG3085	chromosome segregation
DKQ63_RS22645	COG2186	Transcriptional regulator
DKQ63_RS22650	COG0477	Major facilitator Superfamily
DKQ63_RS22655	COG1609	Transcriptional regulator
DKQ63_RS22660	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DKQ63_RS22665	COG1879	ABC-type sugar transport system periplasmic component
DKQ63_RS22670	COG1172	Belongs to the binding-protein-dependent transport system permease family
DKQ63_RS22675	COG1129	ABC transporter
DKQ63_RS22705	COG1522	sequence-specific DNA binding
DKQ63_RS22710	COG0716	FMN binding
DKQ63_RS22725	COG3312	ion transport
DKQ63_RS22775	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DKQ63_RS22780	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DKQ63_RS22785	COG0573	inorganic phosphate transmembrane transporter activity
DKQ63_RS22790	COG0581	inorganic phosphate transmembrane transporter activity
DKQ63_RS22795	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DKQ63_RS22800	COG0704	Plays a role in the regulation of phosphate uptake
DKQ63_RS22815	COG2252	PERMEase
DKQ63_RS22820	COG0431	NADPH-dependent FMN reductase
DKQ63_RS22825	COG2091	lysine biosynthetic process via aminoadipic acid
DKQ63_RS22850	COG0814	amino acid
DKQ63_RS22950	COG2963	transposase activity
DKQ63_RS22990	COG0675	Transposase, IS605 OrfB family
DKQ63_RS23025	COG3173	Aminoglycoside phosphotransferase
DKQ63_RS23090	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DKQ63_RS23195	COG4221	oxidoreductase activity
DKQ63_RS23280	COG0697	spore germination
DKQ63_RS23415	COG3039	Transposase
DKQ63_RS23440	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS23455	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS23760	COG2963	transposase activity
DKQ63_RS23765	COG2826	transposase and inactivated derivatives, IS30 family
DKQ63_RS23770	COG2963	transposase activity
DKQ63_RS23780	COG2207	Transcriptional regulator
DKQ63_RS23855	COG2963	transposase activity
DKQ63_RS23865	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DKQ63_RS23895	COG3039	Transposase
DKQ63_RS23905	COG3118	belongs to the thioredoxin family
DKQ63_RS23905	COG0457	Tetratricopeptide repeat
DKQ63_RS23945	COG1215	transferase activity, transferring glycosyl groups
DKQ63_RS23965	COG2199	diguanylate cyclase activity