locus-tag class description SH05_RS00005 PF00468 Ribosomal protein L34 SH05_RS00010 PF00825 Ribonuclease P SH05_RS00015 PF01809 Putative membrane protein insertion efficiency factor SH05_RS00020 PF02096 60Kd inner membrane protein SH05_RS00020 PF14849 YidC periplasmic domain SH05_RS00025 PF10396 GTP-binding protein TrmE N-terminus SH05_RS00025 PF12631 MnmE helical domain SH05_RS00025 PF01926 50S ribosome-binding GTPase SH05_RS00030 PF08053 Tryptophanase operon leader peptide SH05_RS00035 PF01212 Beta-eliminating lyase SH05_RS00040 PF03222 Tryptophan/tyrosine permease family SH05_RS00045 PF07690 Major Facilitator Superfamily SH05_RS00050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS00050 PF03466 LysR substrate binding domain SH05_RS00060 PF03358 NADPH-dependent FMN reductase SH05_RS00065 PF00860 Permease family SH05_RS00070 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS00080 PF03691 Uncharacterised protein family (UPF0167) SH05_RS00085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH05_RS00090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH05_RS00090 PF00756 Putative esterase SH05_RS00095 PF02264 LamB porin SH05_RS00095 PF11471 Maltoporin periplasmic N-terminal extension SH05_RS00100 PF00232 Glycosyl hydrolase family 1 SH05_RS00105 PF02378 Phosphotransferase system, EIIC SH05_RS00105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH05_RS00105 PF00367 phosphotransferase system, EIIB SH05_RS00110 PF03123 CAT RNA binding domain SH05_RS00110 PF00874 PRD domain SH05_RS00115 PF01895 PhoU domain SH05_RS00120 PF00005 ABC transporter SH05_RS00125 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS00130 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS00135 PF12849 PBP superfamily domain SH05_RS00140 PF01380 SIS domain SH05_RS00145 PF14602 Hexapeptide repeat of succinyl-transferase SH05_RS00145 PF12804 MobA-like NTP transferase domain SH05_RS00145 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS00150 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SH05_RS00150 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SH05_RS00155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH05_RS00155 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH05_RS00160 PF00231 ATP synthase SH05_RS00165 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH05_RS00165 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH05_RS00165 PF00306 ATP synthase alpha/beta chain, C terminal domain SH05_RS00170 PF00213 ATP synthase delta (OSCP) subunit SH05_RS00175 PF00430 ATP synthase B/B' CF(0) SH05_RS00180 PF00137 ATP synthase subunit C SH05_RS00185 PF00119 ATP synthase A chain SH05_RS00190 PF03899 ATP synthase I chain SH05_RS00195 PF02527 rRNA small subunit methyltransferase G SH05_RS00200 PF13932 GidA associated domain SH05_RS00200 PF01134 Glucose inhibited division protein A SH05_RS00205 PF00258 Flavodoxin SH05_RS00210 PF01037 Lrp/AsnC ligand binding domain SH05_RS00215 PF03590 Aspartate-ammonia ligase SH05_RS00220 PF05762 VWA domain containing CoxE-like protein SH05_RS00225 PF17868 AAA lid domain SH05_RS00225 PF12592 Protein of unknown function (DUF3763) SH05_RS00225 PF07728 AAA domain (dynein-related subfamily) SH05_RS00230 PF02705 K+ potassium transporter SH05_RS00235 PF05025 RbsD / FucU transport protein family SH05_RS00240 PF00005 ABC transporter SH05_RS00245 PF02653 Branched-chain amino acid transport system / permease component SH05_RS00250 PF13407 Periplasmic binding protein domain SH05_RS00255 PF00294 pfkB family carbohydrate kinase SH05_RS00260 PF00356 Bacterial regulatory proteins, lacI family SH05_RS00265 PF07690 Major Facilitator Superfamily SH05_RS00270 PF07729 FCD domain SH05_RS00270 PF00392 Bacterial regulatory proteins, gntR family SH05_RS00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS00305 PF03466 LysR substrate binding domain SH05_RS00310 PF04219 Protein of unknown function, DUF SH05_RS00315 PF01078 Magnesium chelatase, subunit ChlI SH05_RS00315 PF13335 Magnesium chelatase, subunit ChlI C-terminal SH05_RS00320 PF08046 IlvGEDA operon leader peptide SH05_RS00335 PF01063 Amino-transferase class IV SH05_RS00340 PF00920 Dehydratase family SH05_RS00345 PF00291 Pyridoxal-phosphate dependent enzyme SH05_RS00345 PF00585 C-terminal regulatory domain of Threonine dehydratase SH05_RS00350 PF03466 LysR substrate binding domain SH05_RS00350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS00355 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SH05_RS00355 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SH05_RS00370 PF13361 UvrD-like helicase C-terminal domain SH05_RS00370 PF00580 UvrD/REP helicase N-terminal domain SH05_RS00375 PF02541 Ppx/GppA phosphatase family SH05_RS00380 PF00270 DEAD/DEAH box helicase SH05_RS00380 PF00271 Helicase conserved C-terminal domain SH05_RS00385 PF00085 Thioredoxin SH05_RS00395 PF07497 Rho termination factor, RNA-binding domain SH05_RS00395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH05_RS00395 PF07498 Rho termination factor, N-terminal domain SH05_RS00405 PF00953 Glycosyl transferase family 4 SH05_RS00410 PF02706 Chain length determinant protein SH05_RS00415 PF02350 UDP-N-acetylglucosamine 2-epimerase SH05_RS00420 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH05_RS00420 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH05_RS00420 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH05_RS00425 PF16363 GDP-mannose 4,6 dehydratase SH05_RS00430 PF00483 Nucleotidyl transferase SH05_RS00440 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH05_RS00445 PF01943 Polysaccharide biosynthesis protein SH05_RS00450 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 SH05_RS00455 PF06899 WzyE protein, O-antigen assembly polymerase SH05_RS00460 PF03808 Glycosyl transferase WecB/TagA/CpsF family SH05_RS00465 PF00324 Amino acid permease SH05_RS00490 PF13186 Iron-sulfur cluster-binding domain SH05_RS00490 PF04055 Radical SAM superfamily SH05_RS00495 PF00884 Sulfatase SH05_RS00500 PF07719 Tetratricopeptide repeat SH05_RS00500 PF07219 HemY protein N-terminus SH05_RS00505 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase SH05_RS00510 PF02602 Uroporphyrinogen-III synthase HemD SH05_RS00515 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SH05_RS00515 PF03900 Porphobilinogen deaminase, C-terminal domain SH05_RS00520 PF12633 Adenylate cyclase NT domain SH05_RS00520 PF01295 Adenylate cyclase, class-I SH05_RS00525 PF01491 Frataxin-like domain SH05_RS00530 PF13627 Prokaryotic lipoprotein-attachment site SH05_RS00535 PF01678 Diaminopimelate epimerase SH05_RS00540 PF04340 Protein of unknown function, DUF484 SH05_RS00545 PF02899 Phage integrase, N-terminal SAM-like domain SH05_RS00545 PF00589 Phage integrase family SH05_RS00550 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS00555 PF13361 UvrD-like helicase C-terminal domain SH05_RS00555 PF00580 UvrD/REP helicase N-terminal domain SH05_RS00560 PF09992 Phosphodiester glycosidase SH05_RS00570 PF01544 CorA-like Mg2+ transporter protein SH05_RS00575 PF10947 Protein of unknown function (DUF2628) SH05_RS00585 PF00892 EamA-like transporter family SH05_RS00590 PF03061 Thioesterase superfamily SH05_RS00595 PF02253 Phospholipase A1 SH05_RS00600 PF16124 RecQ zinc-binding SH05_RS00600 PF00570 HRDC domain SH05_RS00600 PF00271 Helicase conserved C-terminal domain SH05_RS00600 PF09382 RQC domain SH05_RS00600 PF00270 DEAD/DEAH box helicase SH05_RS00605 PF01810 LysE type translocator SH05_RS00610 PF01810 LysE type translocator SH05_RS00615 PF12146 Serine aminopeptidase, S33 SH05_RS00625 PF00892 EamA-like transporter family SH05_RS00630 PF03466 LysR substrate binding domain SH05_RS00630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS00635 PF08267 Cobalamin-independent synthase, N-terminal domain SH05_RS00635 PF01717 Cobalamin-independent synthase, Catalytic domain SH05_RS00640 PF01738 Dienelactone hydrolase family SH05_RS00645 PF01048 Phosphorylase superfamily SH05_RS00650 PF02646 RmuC family SH05_RS00655 PF01209 ubiE/COQ5 methyltransferase family SH05_RS00660 PF02036 SCP-2 sterol transfer family SH05_RS00665 PF03109 ABC1 family SH05_RS00670 PF02416 mttA/Hcf106 family SH05_RS00680 PF00902 Sec-independent protein translocase protein (TatC) SH05_RS00685 PF01026 TatD related DNase SH05_RS00690 PF02357 Transcription termination factor nusG SH05_RS00695 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SH05_RS00700 PF00175 Oxidoreductase NAD-binding domain SH05_RS00700 PF00970 Oxidoreductase FAD-binding domain SH05_RS00705 PF02803 Thiolase, C-terminal domain SH05_RS00705 PF00108 Thiolase, N-terminal domain SH05_RS00710 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH05_RS00710 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH05_RS00710 PF00378 Enoyl-CoA hydratase/isomerase SH05_RS00715 PF00557 Metallopeptidase family M24 SH05_RS00720 PF09186 Domain of unknown function (DUF1949) SH05_RS00720 PF01205 Uncharacterized protein family UPF0029 SH05_RS00725 PF02386 Cation transport protein SH05_RS00730 PF12724 Flavodoxin domain SH05_RS00760 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SH05_RS00765 PF12804 MobA-like NTP transferase domain SH05_RS00770 PF06288 Protein of unknown function (DUF1040) SH05_RS00775 PF01636 Phosphotransferase enzyme family SH05_RS00780 PF01323 DSBA-like thioredoxin domain SH05_RS00785 PF06097 Bacterial protein of unknown function (DUF945) SH05_RS00790 PF01553 Acyltransferase SH05_RS00800 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH05_RS00800 PF01367 5'-3' exonuclease, C-terminal SAM fold SH05_RS00800 PF00476 DNA polymerase family A SH05_RS00800 PF01612 3'-5' exonuclease SH05_RS00805 PF01926 50S ribosome-binding GTPase SH05_RS00810 PF04220 Der GTPase activator (YihI) SH05_RS00815 PF06969 HemN C-terminal domain SH05_RS00815 PF04055 Radical SAM superfamily SH05_RS00825 PF00072 Response regulator receiver domain SH05_RS00825 PF00158 Sigma-54 interaction domain SH05_RS00825 PF02954 Bacterial regulatory protein, Fis family SH05_RS00830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS00830 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS00830 PF00989 PAS fold SH05_RS00835 PF00120 Glutamine synthetase, catalytic domain SH05_RS00835 PF03951 Glutamine synthetase, beta-Grasp domain SH05_RS00845 PF03144 Elongation factor Tu domain 2 SH05_RS00845 PF00009 Elongation factor Tu GTP binding domain SH05_RS00845 PF00679 Elongation factor G C-terminus SH05_RS00850 PF07702 UTRA domain SH05_RS00850 PF00392 Bacterial regulatory proteins, gntR family SH05_RS00855 PF01261 Xylose isomerase-like TIM barrel SH05_RS00860 PF07690 Major Facilitator Superfamily SH05_RS00865 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH05_RS00880 PF01055 Glycosyl hydrolases family 31 SH05_RS00885 PF01263 Aldose 1-epimerase SH05_RS00895 PF01791 DeoC/LacD family aldolase SH05_RS00900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH05_RS00900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH05_RS00905 PF00294 pfkB family carbohydrate kinase SH05_RS00910 PF08220 DeoR-like helix-turn-helix domain SH05_RS00910 PF00455 DeoR C terminal sensor domain SH05_RS00915 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS00920 PF03631 Virulence factor BrkB SH05_RS00925 PF02580 D-Tyr-tRNA(Tyr) deacylase SH05_RS00930 PF09500 Putative thioesterase (yiiD_Cterm) SH05_RS00930 PF00583 Acetyltransferase (GNAT) family SH05_RS00935 PF01402 Ribbon-helix-helix protein, copG family SH05_RS00950 PF04216 Protein involved in formate dehydrogenase formation SH05_RS00955 PF01292 Prokaryotic cytochrome b561 SH05_RS00960 PF13247 4Fe-4S dicluster domain SH05_RS00960 PF09163 Formate dehydrogenase N, transmembrane SH05_RS00965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS00965 PF01568 Molydopterin dinucleotide binding domain SH05_RS00965 PF00384 Molybdopterin oxidoreductase SH05_RS00970 PF00384 Molybdopterin oxidoreductase SH05_RS00970 PF01568 Molydopterin dinucleotide binding domain SH05_RS00970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS00975 PF02634 FdhD/NarQ family SH05_RS00980 PF12889 Protein of unknown function (DUF3829) SH05_RS00985 PF08279 HTH domain SH05_RS00985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS00990 PF05343 M42 glutamyl aminopeptidase SH05_RS00995 PF02378 Phosphotransferase system, EIIC SH05_RS00995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS01000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS01005 PF05336 L-rhamnose mutarotase SH05_RS01010 PF00596 Class II Aldolase and Adducin N-terminal domain SH05_RS01015 PF06134 L-rhamnose isomerase (RhaA) SH05_RS01020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH05_RS01020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH05_RS01030 PF12833 Helix-turn-helix domain SH05_RS01030 PF02311 AraC-like ligand binding domain SH05_RS01035 PF12833 Helix-turn-helix domain SH05_RS01035 PF02311 AraC-like ligand binding domain SH05_RS01040 PF06379 L-rhamnose-proton symport protein (RhaT) SH05_RS01045 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH05_RS01045 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH05_RS01055 PF03812 2-keto-3-deoxygluconate permease SH05_RS01060 PF03475 3-alpha domain SH05_RS01060 PF03473 MOSC domain SH05_RS01065 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS01065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS01065 PF00672 HAMP domain SH05_RS01065 PF16527 Two-component sensor protein CpxA, periplasmic domain SH05_RS01070 PF00486 Transcriptional regulatory protein, C terminal SH05_RS01070 PF00072 Response regulator receiver domain SH05_RS01075 PF07813 LTXXQ motif family protein SH05_RS01080 PF16916 Dimerisation domain of Zinc Transporter SH05_RS01080 PF01545 Cation efflux family SH05_RS01085 PF00365 Phosphofructokinase SH05_RS01095 PF02611 CDP-diacylglycerol pyrophosphatase SH05_RS01100 PF00121 Triosephosphate isomerase SH05_RS01105 PF07305 Protein of unknown function (DUF1454) SH05_RS01110 PF05656 Protein of unknown function (DUF805) SH05_RS01115 PF04175 Protein of unknown function (DUF406) SH05_RS01120 PF00582 Universal stress protein family SH05_RS01125 PF00970 Oxidoreductase FAD-binding domain SH05_RS01125 PF00175 Oxidoreductase NAD-binding domain SH05_RS01130 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH05_RS01135 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH05_RS01135 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH05_RS01140 PF00230 Major intrinsic protein SH05_RS01145 PF06005 Cell division protein ZapB SH05_RS01150 PF03737 Aldolase/RraA SH05_RS01155 PF01040 UbiA prenyltransferase family SH05_RS01160 PF00004 ATPase family associated with various cellular activities (AAA) SH05_RS01160 PF10431 C-terminal, D2-small domain, of ClpB protein SH05_RS01160 PF07724 AAA domain (Cdc48 subfamily) SH05_RS01165 PF00227 Proteasome subunit SH05_RS01170 PF05036 Sporulation related domain SH05_RS01175 PF00356 Bacterial regulatory proteins, lacI family SH05_RS01180 PF18074 Primosomal protein N C-terminal domain SH05_RS01180 PF17764 3′ DNA-binding domain (3′BD) SH05_RS01180 PF00271 Helicase conserved C-terminal domain SH05_RS01180 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SH05_RS01180 PF00270 DEAD/DEAH box helicase SH05_RS01185 PF01197 Ribosomal protein L31 SH05_RS01190 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH05_RS01195 PF01340 Met Apo-repressor, MetJ SH05_RS01205 PF00742 Homoserine dehydrogenase SH05_RS01205 PF00696 Amino acid kinase family SH05_RS01205 PF03447 Homoserine dehydrogenase, NAD binding domain SH05_RS01215 PF02219 Methylenetetrahydrofolate reductase SH05_RS01220 PF00141 Peroxidase SH05_RS01225 PF00892 EamA-like transporter family SH05_RS01230 PF06940 Domain of unknown function (DUF1287) SH05_RS01240 PF00465 Iron-containing alcohol dehydrogenase SH05_RS01245 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH05_RS01250 PF00391 PEP-utilising enzyme, mobile domain SH05_RS01250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS01250 PF00381 PTS HPr component phosphorylation site SH05_RS01250 PF02896 PEP-utilising enzyme, TIM barrel domain SH05_RS01250 PF05524 PEP-utilising enzyme, N-terminal SH05_RS01260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS01265 PF01228 Glycine radical SH05_RS01265 PF02901 Pyruvate formate lyase-like SH05_RS01270 PF04055 Radical SAM superfamily SH05_RS01275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS01280 PF12833 Helix-turn-helix domain SH05_RS01285 PF00884 Sulfatase SH05_RS01290 PF00311 Phosphoenolpyruvate carboxylase SH05_RS01300 PF01546 Peptidase family M20/M25/M40 SH05_RS01300 PF07687 Peptidase dimerisation domain SH05_RS01305 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH05_RS01305 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH05_RS01310 PF00696 Amino acid kinase family SH05_RS01315 PF14698 Argininosuccinate lyase C-terminal SH05_RS01315 PF00206 Lyase SH05_RS01320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS01320 PF03466 LysR substrate binding domain SH05_RS01325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH05_RS01325 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS01330 PF00440 Bacterial regulatory proteins, tetR family SH05_RS01335 PF07226 Protein of unknown function (DUF1422) SH05_RS01340 PF05958 tRNA (Uracil-5-)-methyltransferase SH05_RS01345 PF07715 TonB-dependent Receptor Plug Domain SH05_RS01345 PF00593 TonB dependent receptor SH05_RS01350 PF01177 Asp/Glu/Hydantoin racemase SH05_RS01375 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SH05_RS01375 PF01565 FAD binding domain SH05_RS01380 PF02237 Biotin protein ligase C terminal domain SH05_RS01380 PF08279 HTH domain SH05_RS01380 PF03099 Biotin/lipoate A/B protein ligase family SH05_RS01385 PF00485 Phosphoribulokinase / Uridine kinase family SH05_RS01415 PF03144 Elongation factor Tu domain 2 SH05_RS01415 PF03143 Elongation factor Tu C-terminal domain SH05_RS01415 PF00009 Elongation factor Tu GTP binding domain SH05_RS01420 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SH05_RS01425 PF00467 KOW motif SH05_RS01425 PF02357 Transcription termination factor nusG SH05_RS01430 PF03946 Ribosomal protein L11, N-terminal domain SH05_RS01430 PF00298 Ribosomal protein L11, RNA binding domain SH05_RS01435 PF00687 Ribosomal protein L1p/L10e family SH05_RS01440 PF00466 Ribosomal protein L10 SH05_RS01445 PF00542 Ribosomal protein L7/L12 C-terminal domain SH05_RS01445 PF16320 Ribosomal protein L7/L12 dimerisation domain SH05_RS01450 PF04561 RNA polymerase Rpb2, domain 2 SH05_RS01450 PF04565 RNA polymerase Rpb2, domain 3 SH05_RS01450 PF10385 RNA polymerase beta subunit external 1 domain SH05_RS01450 PF04563 RNA polymerase beta subunit SH05_RS01450 PF04560 RNA polymerase Rpb2, domain 7 SH05_RS01450 PF00562 RNA polymerase Rpb2, domain 6 SH05_RS01455 PF05000 RNA polymerase Rpb1, domain 4 SH05_RS01455 PF04983 RNA polymerase Rpb1, domain 3 SH05_RS01455 PF00623 RNA polymerase Rpb1, domain 2 SH05_RS01455 PF04998 RNA polymerase Rpb1, domain 5 SH05_RS01455 PF04997 RNA polymerase Rpb1, domain 1 SH05_RS01465 PF04055 Radical SAM superfamily SH05_RS01465 PF06968 Biotin and Thiamin Synthesis associated domain SH05_RS01470 PF05690 Thiazole biosynthesis protein ThiG SH05_RS01475 PF02597 ThiS family SH05_RS01480 PF00899 ThiF family SH05_RS01485 PF02581 Thiamine monophosphate synthase SH05_RS01490 PF01964 Radical SAM ThiC family SH05_RS01490 PF13667 ThiC-associated domain SH05_RS01495 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ SH05_RS01500 PF09297 NADH pyrophosphatase zinc ribbon domain SH05_RS01500 PF00293 NUDIX domain SH05_RS01505 PF01208 Uroporphyrinogen decarboxylase (URO-D) SH05_RS01510 PF04493 Endonuclease V SH05_RS01515 PF04222 Protein of unknown function (DUF416) SH05_RS01520 PF00216 Bacterial DNA-binding protein SH05_RS01525 PF07356 Protein of unknown function (DUF1481) SH05_RS01530 PF13801 Heavy-metal resistance SH05_RS01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS01535 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS01540 PF00158 Sigma-54 interaction domain SH05_RS01540 PF00072 Response regulator receiver domain SH05_RS01540 PF02954 Bacterial regulatory protein, Fis family SH05_RS01545 PF02844 Phosphoribosylglycinamide synthetase, N domain SH05_RS01545 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SH05_RS01545 PF02843 Phosphoribosylglycinamide synthetase, C domain SH05_RS01550 PF02142 MGS-like domain SH05_RS01550 PF01808 AICARFT/IMPCHase bienzyme SH05_RS01590 PF13673 Acetyltransferase (GNAT) domain SH05_RS01595 PF04204 Homoserine O-succinyltransferase SH05_RS01600 PF01274 Malate synthase SH05_RS01605 PF00463 Isocitrate lyase family SH05_RS01610 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SH05_RS01615 PF07906 ShET2 enterotoxin, N-terminal region SH05_RS01620 PF01614 Bacterial transcriptional regulator SH05_RS01620 PF09339 IclR helix-turn-helix domain SH05_RS01625 PF00809 Pterin binding enzyme SH05_RS01625 PF02574 Homocysteine S-methyltransferase SH05_RS01625 PF02965 Vitamin B12 dependent methionine synthase, activation domain SH05_RS01625 PF02310 B12 binding domain SH05_RS01625 PF02607 B12 binding domain SH05_RS01630 PF02690 Na+/Pi-cotransporter SH05_RS01635 PF03575 Peptidase family S51 SH05_RS01640 PF01479 S4 domain SH05_RS01640 PF00849 RNA pseudouridylate synthase SH05_RS01645 PF11656 YjbD family (DUF3811) SH05_RS01650 PF01842 ACT domain SH05_RS01650 PF00696 Amino acid kinase family SH05_RS01655 PF00342 Phosphoglucose isomerase SH05_RS01660 PF03400 IS1 transposase SH05_RS01665 PF12759 InsA C-terminal domain SH05_RS01665 PF03811 InsA N-terminal domain SH05_RS01670 PF11106 Exopolysaccharide production protein YjbE SH05_RS01675 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH05_RS01680 PF06251 Capsule biosynthesis GfcC SH05_RS01685 PF06082 Exopolysaccharide biosynthesis protein YbjH SH05_RS01700 PF06146 Phosphate-starvation-inducible E SH05_RS01705 PF00083 Sugar (and other) transporter SH05_RS01710 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS01715 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS01715 PF14785 Maltose transport system permease protein MalF P2 domain SH05_RS01720 PF01547 Bacterial extracellular solute-binding protein SH05_RS01730 PF00005 ABC transporter SH05_RS01730 PF17912 MalK OB fold domain SH05_RS01735 PF02264 LamB porin SH05_RS01740 PF07148 Maltose operon periplasmic protein precursor (MalM) SH05_RS01750 PF13981 SopA-like central domain SH05_RS01750 PF13599 Pentapeptide repeats (9 copies) SH05_RS01755 PF04345 Chorismate lyase SH05_RS01760 PF01040 UbiA prenyltransferase family SH05_RS01765 PF01553 Acyltransferase SH05_RS01770 PF01219 Prokaryotic diacylglycerol kinase SH05_RS01775 PF01726 LexA DNA binding domain SH05_RS01775 PF00717 Peptidase S24-like SH05_RS01780 PF01554 MatE SH05_RS01785 PF05532 CsbD-like SH05_RS01790 PF01475 Ferric uptake regulator family SH05_RS01800 PF10897 Protein of unknown function (DUF2713) SH05_RS01805 PF01207 Dihydrouridine synthase (Dus) SH05_RS01810 PF09583 Phage shock protein G (Phageshock_PspG) SH05_RS01815 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS01815 PF00107 Zinc-binding dehydrogenase SH05_RS01820 PF00772 DnaB-like helicase N terminal domain SH05_RS01820 PF03796 DnaB-like helicase C terminal domain SH05_RS01825 PF01168 Alanine racemase, N-terminal domain SH05_RS01825 PF00842 Alanine racemase, C-terminal domain SH05_RS01830 PF00155 Aminotransferase class I and II SH05_RS01840 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SH05_RS01845 PF01894 Uncharacterised protein family UPF0047 SH05_RS01850 PF04237 YjbR SH05_RS01855 PF00005 ABC transporter SH05_RS01855 PF17755 UvrA DNA-binding domain SH05_RS01855 PF17760 UvrA interaction domain SH05_RS01860 PF00436 Single-strand binding protein family SH05_RS01865 PF15940 Family of unknown function SH05_RS01870 PF00563 EAL domain SH05_RS01870 PF12792 CSS motif domain associated with EAL SH05_RS01875 PF12833 Helix-turn-helix domain SH05_RS01880 PF00376 MerR family regulatory protein SH05_RS01880 PF09278 MerR, DNA binding SH05_RS01885 PF00860 Permease family SH05_RS01890 PF00999 Sodium/hydrogen exchanger family SH05_RS01895 PF00805 Pentapeptide repeats (8 copies) SH05_RS01900 PF00474 Sodium:solute symporter family SH05_RS01905 PF04341 Protein of unknown function, DUF485 SH05_RS01910 PF13193 AMP-binding enzyme C-terminal domain SH05_RS01910 PF00501 AMP-binding enzyme SH05_RS01910 PF16177 Acetyl-coenzyme A synthetase N-terminus SH05_RS01915 PF02335 Cytochrome c552 SH05_RS01920 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) SH05_RS01920 PF13435 Cytochrome c554 and c-prime SH05_RS01925 PF13247 4Fe-4S dicluster domain SH05_RS01925 PF00037 4Fe-4S binding domain SH05_RS01930 PF03916 Polysulphide reductase, NrfD SH05_RS01935 PF01578 Cytochrome C assembly protein SH05_RS01935 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH05_RS01940 PF03918 Cytochrome C biogenesis protein SH05_RS01950 PF00375 Sodium:dicarboxylate symporter family SH05_RS01955 PF08238 Sel1 repeat SH05_RS01960 PF00384 Molybdopterin oxidoreductase SH05_RS01960 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS01960 PF01568 Molydopterin dinucleotide binding domain SH05_RS01965 PF00384 Molybdopterin oxidoreductase SH05_RS01965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS01965 PF01568 Molydopterin dinucleotide binding domain SH05_RS01970 PF02321 Outer membrane efflux protein SH05_RS01975 PF04632 Fusaric acid resistance protein family SH05_RS01980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS01980 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS01985 PF17090 Uncharacterised protein family SH05_RS01990 PF00753 Metallo-beta-lactamase superfamily SH05_RS01990 PF14863 Alkyl sulfatase dimerisation SH05_RS01990 PF14864 Alkyl sulfatase C-terminal SH05_RS01995 PF00480 ROK family SH05_RS02000 PF00834 Ribulose-phosphate 3 epimerase family SH05_RS02005 PF02653 Branched-chain amino acid transport system / permease component SH05_RS02010 PF00005 ABC transporter SH05_RS02015 PF13407 Periplasmic binding protein domain SH05_RS02020 PF01418 Helix-turn-helix domain, rpiR family SH05_RS02020 PF01380 SIS domain SH05_RS02025 PF02502 Ribose/Galactose Isomerase SH05_RS02035 PF12706 Beta-lactamase superfamily domain SH05_RS02040 PF00583 Acetyltransferase (GNAT) family SH05_RS02050 PF07969 Amidohydrolase family SH05_RS02055 PF00005 ABC transporter SH05_RS02060 PF00005 ABC transporter SH05_RS02065 PF06007 Phosphonate metabolism protein PhnJ SH05_RS02070 PF05861 Bacterial phosphonate metabolism protein (PhnI) SH05_RS02075 PF05845 Bacterial phosphonate metabolism protein (PhnH) SH05_RS02080 PF06754 Phosphonate metabolism protein PhnG SH05_RS02085 PF07702 UTRA domain SH05_RS02085 PF00392 Bacterial regulatory proteins, gntR family SH05_RS02100 PF00005 ABC transporter SH05_RS02105 PF06983 3-demethylubiquinone-9 3-methyltransferase SH05_RS02110 PF08274 PhnA Zinc-Ribbon SH05_RS02110 PF03831 PhnA domain SH05_RS02115 PF00350 Dynamin family SH05_RS02120 PF13990 YjcZ-like protein SH05_RS02125 PF00083 Sugar (and other) transporter SH05_RS02125 PF08946 Osmosensory transporter coiled coil SH05_RS02135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS02135 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS02140 PF00486 Transcriptional regulatory protein, C terminal SH05_RS02140 PF00072 Response regulator receiver domain SH05_RS02145 PF08019 Phosphoethanolamine transferase EptA/EptB SH05_RS02145 PF00884 Sulfatase SH05_RS02150 PF13520 Amino acid permease SH05_RS02155 PF12833 Helix-turn-helix domain SH05_RS02160 PF01276 Orn/Lys/Arg decarboxylase, major domain SH05_RS02160 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH05_RS02160 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH05_RS02165 PF12833 Helix-turn-helix domain SH05_RS02175 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH05_RS02175 PF02056 Family 4 glycosyl hydrolase SH05_RS02185 PF09997 Predicted membrane protein (DUF2238) SH05_RS02190 PF05681 Fumarate hydratase (Fumerase) SH05_RS02190 PF05683 Fumarase C-terminus SH05_RS02195 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH05_RS02205 PF00072 Response regulator receiver domain SH05_RS02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS02210 PF17203 Single cache domain 3 SH05_RS02210 PF00989 PAS fold SH05_RS02210 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH05_RS02215 PF06902 Divergent 4Fe-4S mono-cluster SH05_RS02220 PF14542 GCN5-related N-acetyl-transferase SH05_RS02225 PF11080 Endoribonuclease GhoS SH05_RS02230 PF10753 Toxin GhoT_OrtT SH05_RS02235 PF00152 tRNA synthetases class II (D, K and N) SH05_RS02235 PF01336 OB-fold nucleic acid binding domain SH05_RS02240 PF00854 POT family SH05_RS02245 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH05_RS02245 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH05_RS02245 PF01276 Orn/Lys/Arg decarboxylase, major domain SH05_RS02250 PF13520 Amino acid permease SH05_RS02255 PF18500 CadC C-terminal domain 1 SH05_RS02255 PF00486 Transcriptional regulatory protein, C terminal SH05_RS02270 PF02683 Cytochrome C biogenesis protein transmembrane region SH05_RS02270 PF11412 Disulphide bond corrector protein DsbC SH05_RS02275 PF03091 CutA1 divalent ion tolerance protein SH05_RS02280 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH05_RS02285 PF10415 Fumarase C C-terminus SH05_RS02285 PF00206 Lyase SH05_RS02290 PF04186 FxsA cytoplasmic membrane protein SH05_RS02295 PF13520 Amino acid permease SH05_RS02300 PF00166 Chaperonin 10 Kd subunit SH05_RS02305 PF00118 TCP-1/cpn60 chaperonin family SH05_RS02310 PF13698 Domain of unknown function (DUF4156) SH05_RS02315 PF15922 YjeJ-like SH05_RS02320 PF04055 Radical SAM superfamily SH05_RS02325 PF09285 Elongation factor P, C-terminal SH05_RS02325 PF08207 Elongation factor P (EF-P) KOW-like domain SH05_RS02325 PF01132 Elongation factor P (EF-P) OB domain SH05_RS02330 PF08085 Entericidin EcnA/B family SH05_RS02335 PF08085 Entericidin EcnA/B family SH05_RS02340 PF00893 Small Multidrug Resistance protein SH05_RS02345 PF08212 Lipocalin-like domain SH05_RS02350 PF00144 Beta-lactamase SH05_RS02355 PF02313 Fumarate reductase subunit D SH05_RS02360 PF02300 Fumarate reductase subunit C SH05_RS02365 PF13085 2Fe-2S iron-sulfur cluster binding domain SH05_RS02365 PF13183 4Fe-4S dicluster domain SH05_RS02370 PF02910 Fumarate reductase flavoprotein C-term SH05_RS02370 PF00890 FAD binding domain SH05_RS02375 PF00152 tRNA synthetases class II (D, K and N) SH05_RS02380 PF13520 Amino acid permease SH05_RS02390 PF10840 Protein of unknown function (DUF2645) SH05_RS02395 PF12795 Mechanosensitive ion channel porin domain SH05_RS02395 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH05_RS02395 PF00924 Mechanosensitive ion channel SH05_RS02400 PF02666 Phosphatidylserine decarboxylase SH05_RS02405 PF03193 RsgA GTPase SH05_RS02410 PF00929 Exonuclease SH05_RS02430 PF08331 Domain of unknown function (DUF1730) SH05_RS02435 PF03853 YjeF-related protein N-terminus SH05_RS02435 PF01256 Carbohydrate kinase SH05_RS02440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SH05_RS02445 PF01520 N-acetylmuramoyl-L-alanine amidase SH05_RS02450 PF01119 DNA mismatch repair protein, C-terminal domain SH05_RS02450 PF08676 MutL C terminal dimerisation domain SH05_RS02460 PF17209 Hfq protein SH05_RS02465 PF13167 GTP-binding GTPase N-terminal SH05_RS02465 PF01926 50S ribosome-binding GTPase SH05_RS02465 PF16360 GTP-binding GTPase Middle Region SH05_RS02470 PF01145 SPFH domain / Band 7 family SH05_RS02470 PF12221 Bacterial membrane protein N terminal SH05_RS02475 PF01145 SPFH domain / Band 7 family SH05_RS02480 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) SH05_RS02485 PF00709 Adenylosuccinate synthetase SH05_RS02490 PF02082 Transcriptional regulator SH05_RS02495 PF00773 RNB domain SH05_RS02495 PF17876 Cold shock domain SH05_RS02495 PF08206 Ribonuclease B OB domain SH05_RS02495 PF08461 Ribonuclease R winged-helix domain SH05_RS02495 PF00575 S1 RNA binding domain SH05_RS02500 PF00588 SpoU rRNA Methylase family SH05_RS02500 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH05_RS02505 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) SH05_RS02510 PF04012 PspA/IM30 family SH05_RS02515 PF10679 Protein of unknown function (DUF2491) SH05_RS02520 PF03994 Domain of Unknown Function (DUF350) SH05_RS02525 PF06693 Protein of unknown function (DUF1190) SH05_RS02530 PF03738 Glutathionylspermidine synthase preATP-grasp SH05_RS02535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH05_RS02535 PF18158 Adaptive response protein AidB N-terminal domain SH05_RS02535 PF02770 Acyl-CoA dehydrogenase, middle domain SH05_RS02540 PF07338 Protein of unknown function (DUF1471) SH05_RS02545 PF07338 Protein of unknown function (DUF1471) SH05_RS02550 PF00326 Prolyl oligopeptidase family SH05_RS02555 PF00455 DeoR C terminal sensor domain SH05_RS02555 PF08220 DeoR-like helix-turn-helix domain SH05_RS02565 PF03611 PTS system sugar-specific permease component SH05_RS02570 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS02575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS02580 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH05_RS02585 PF01261 Xylose isomerase-like TIM barrel SH05_RS02590 PF00596 Class II Aldolase and Adducin N-terminal domain SH05_RS02595 PF07338 Protein of unknown function (DUF1471) SH05_RS02605 PF01250 Ribosomal protein S6 SH05_RS02610 PF00436 Single-strand binding protein family SH05_RS02615 PF01084 Ribosomal protein S18 SH05_RS02620 PF01281 Ribosomal protein L9, N-terminal domain SH05_RS02620 PF03948 Ribosomal protein L9, C-terminal domain SH05_RS02625 PF10887 Protein of unknown function (DUF2686) SH05_RS02630 PF17938 Tetracyclin repressor-like, C-terminal domain SH05_RS02635 PF08525 Opacity-associated protein A N-terminal motif SH05_RS02635 PF04225 Opacity-associated protein A LysM-like domain SH05_RS02640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH05_RS02640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH05_RS02645 PF00324 Amino acid permease SH05_RS02650 PF01814 Hemerythrin HHE cation binding domain SH05_RS02650 PF04405 Domain of Unknown function (DUF542) SH05_RS02655 PF00892 EamA-like transporter family SH05_RS02660 PF05368 NmrA-like family SH05_RS02665 PF01638 HxlR-like helix-turn-helix SH05_RS02670 PF00149 Calcineurin-like phosphoesterase SH05_RS02670 PF02872 5'-nucleotidase, C-terminal domain SH05_RS02675 PF00459 Inositol monophosphatase family SH05_RS02685 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) SH05_RS02690 PF06526 Protein of unknown function (DUF1107) SH05_RS02695 PF00571 CBS domain SH05_RS02695 PF01595 Cyclin M transmembrane N-terminal domain SH05_RS02695 PF03471 Transporter associated domain SH05_RS02700 PF01625 Peptide methionine sulfoxide reductase SH05_RS02710 PF07244 Surface antigen variable number repeat SH05_RS02710 PF17243 POTRA domain TamA domain 1 SH05_RS02710 PF01103 Surface antigen SH05_RS02715 PF04357 TamB, inner membrane protein subunit of TAM complex SH05_RS02720 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like SH05_RS02725 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH05_RS02730 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH05_RS02735 PF00719 Inorganic pyrophosphatase SH05_RS02740 PF13407 Periplasmic binding protein domain SH05_RS02745 PF00005 ABC transporter SH05_RS02750 PF02653 Branched-chain amino acid transport system / permease component SH05_RS02755 PF02653 Branched-chain amino acid transport system / permease component SH05_RS02760 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SH05_RS02765 PF02875 Mur ligase family, glutamate ligase domain SH05_RS02765 PF08245 Mur ligase middle domain SH05_RS02765 PF01225 Mur ligase family, catalytic domain SH05_RS02770 PF04751 Protein of unknown function (DUF615) SH05_RS02775 PF01523 Putative modulator of DNA gyrase SH05_RS02780 PF07361 Cytochrome b562 SH05_RS02790 PF03477 ATP cone domain SH05_RS02790 PF13597 Anaerobic ribonucleoside-triphosphate reductase SH05_RS02795 PF00128 Alpha amylase, catalytic domain SH05_RS02795 PF11941 Domain of unknown function (DUF3459) SH05_RS02800 PF00367 phosphotransferase system, EIIB SH05_RS02800 PF02378 Phosphotransferase system, EIIC SH05_RS02805 PF00356 Bacterial regulatory proteins, lacI family SH05_RS02810 PF00690 Cation transporter/ATPase, N-terminus SH05_RS02810 PF00689 Cation transporting ATPase, C-terminus SH05_RS02815 PF01042 Endoribonuclease L-PSP SH05_RS02820 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain SH05_RS02820 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain SH05_RS02825 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH05_RS02825 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH05_RS02830 PF08052 PyrBI operon leader peptide SH05_RS02840 PF01042 Endoribonuclease L-PSP SH05_RS02850 PF00440 Bacterial regulatory proteins, tetR family SH05_RS02855 PF04074 YhcH/YjgK/YiaL SH05_RS02865 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH05_RS02865 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH05_RS02870 PF06877 Regulator of ribonuclease activity B SH05_RS02875 PF00583 Acetyltransferase (GNAT) family SH05_RS02880 PF05987 Bacterial protein of unknown function (DUF898) SH05_RS02885 PF00133 tRNA synthetases class I (I, L, M and V) SH05_RS02885 PF10458 Valyl tRNA synthetase tRNA binding arm SH05_RS02885 PF08264 Anticodon-binding domain of tRNA SH05_RS02890 PF04364 DNA polymerase III chi subunit, HolC SH05_RS02895 PF00883 Cytosol aminopeptidase family, catalytic domain SH05_RS02895 PF02789 Cytosol aminopeptidase family, N-terminal domain SH05_RS02900 PF03739 Lipopolysaccharide export system permease LptF/LptG SH05_RS02905 PF03739 Lipopolysaccharide export system permease LptF/LptG SH05_RS02910 PF05872 Bacterial protein of unknown function (DUF853) SH05_RS02915 PF00356 Bacterial regulatory proteins, lacI family SH05_RS02920 PF02447 GntP family permease SH05_RS02925 PF00106 short chain dehydrogenase SH05_RS02930 PF00107 Zinc-binding dehydrogenase SH05_RS02930 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS02935 PF01202 Shikimate kinase SH05_RS02940 PF00107 Zinc-binding dehydrogenase SH05_RS02940 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS02950 PF00589 Phage integrase family SH05_RS02950 PF13356 Arm DNA-binding domain SH05_RS02960 PF01527 Transposase SH05_RS02965 PF00665 Integrase core domain SH05_RS02965 PF13276 HTH-like domain SH05_RS02995 PF13006 Insertion element 4 transposase N-terminal SH05_RS02995 PF01609 Transposase DDE domain SH05_RS03000 PF07690 Major Facilitator Superfamily SH05_RS03005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH05_RS03005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH05_RS03010 PF16747 Surface-adhesin protein E SH05_RS03015 PF11700 Vacuole effluxer Atg22 like SH05_RS03020 PF01527 Transposase SH05_RS03025 PF00665 Integrase core domain SH05_RS03025 PF13936 Helix-turn-helix domain SH05_RS03030 PF01527 Transposase SH05_RS03045 PF00005 ABC transporter SH05_RS03050 PF01032 FecCD transport family SH05_RS03055 PF01032 FecCD transport family SH05_RS03060 PF01497 Periplasmic binding protein SH05_RS03065 PF00593 TonB dependent receptor SH05_RS03065 PF07660 Secretin and TonB N terminus short domain SH05_RS03065 PF07715 TonB-dependent Receptor Plug Domain SH05_RS03070 PF16220 Domain of unknown function (DUF4880) SH05_RS03070 PF04773 FecR protein SH05_RS03075 PF04542 Sigma-70 region 2 SH05_RS03075 PF08281 Sigma-70, region 4 SH05_RS03090 PF03400 IS1 transposase SH05_RS03095 PF04198 Putative sugar-binding domain SH05_RS03105 PF02447 GntP family permease SH05_RS03110 PF00920 Dehydratase family SH05_RS03115 PF00701 Dihydrodipicolinate synthetase family SH05_RS03120 PF01614 Bacterial transcriptional regulator SH05_RS03125 PF08220 DeoR-like helix-turn-helix domain SH05_RS03125 PF00455 DeoR C terminal sensor domain SH05_RS03130 PF00834 Ribulose-phosphate 3 epimerase family SH05_RS03135 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS03140 PF03437 BtpA family SH05_RS03145 PF03611 PTS system sugar-specific permease component SH05_RS03150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS03155 PF05343 M42 glutamyl aminopeptidase SH05_RS03160 PF13847 Methyltransferase domain SH05_RS03165 PF00583 Acetyltransferase (GNAT) family SH05_RS03170 PF09857 Putative toxin of bacterial toxin-antitoxin pair SH05_RS03185 PF13091 PLD-like domain SH05_RS03185 PF13087 AAA domain SH05_RS03190 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase SH05_RS03200 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH05_RS03215 PF00589 Phage integrase family SH05_RS03220 PF03400 IS1 transposase SH05_RS03225 PF00589 Phage integrase family SH05_RS03235 PF00419 Fimbrial protein SH05_RS03240 PF00419 Fimbrial protein SH05_RS03245 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS03245 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS03250 PF13954 PapC N-terminal domain SH05_RS03250 PF13953 PapC C-terminal domain SH05_RS03250 PF00577 Outer membrane usher protein SH05_RS03255 PF00419 Fimbrial protein SH05_RS03265 PF09160 FimH, mannose binding SH05_RS03265 PF00419 Fimbrial protein SH05_RS03270 PF02447 GntP family permease SH05_RS03280 PF03786 D-mannonate dehydratase (UxuA) SH05_RS03285 PF01232 Mannitol dehydrogenase Rossmann domain SH05_RS03285 PF08125 Mannitol dehydrogenase C-terminal domain SH05_RS03295 PF07729 FCD domain SH05_RS03295 PF00392 Bacterial regulatory proteins, gntR family SH05_RS03300 PF10887 Protein of unknown function (DUF2686) SH05_RS03320 PF04965 Gene 25-like lysozyme SH05_RS03325 PF03466 LysR substrate binding domain SH05_RS03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS03330 PF01979 Amidohydrolase family SH05_RS03335 PF07670 Nucleoside recognition SH05_RS03340 PF07670 Nucleoside recognition SH05_RS03345 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family SH05_RS03350 PF06779 Uncharacterised MFS-type transporter YbfB SH05_RS03355 PF06977 SdiA-regulated SH05_RS03360 PF11823 Protein of unknown function (DUF3343) SH05_RS03365 PF01869 BadF/BadG/BcrA/BcrD ATPase family SH05_RS03370 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SH05_RS03375 PF04286 Protein of unknown function (DUF445) SH05_RS03380 PF07690 Major Facilitator Superfamily SH05_RS03390 PF00392 Bacterial regulatory proteins, gntR family SH05_RS03390 PF00155 Aminotransferase class I and II SH05_RS03395 PF06568 Domain of unknown function (DUF1127) SH05_RS03410 PF10117 McrBC 5-methylcytosine restriction system component SH05_RS03415 PF12102 Domain of unknown function (DUF3578) SH05_RS03415 PF07728 AAA domain (dynein-related subfamily) SH05_RS03420 PF08845 Toxin SymE, type I toxin-antitoxin system SH05_RS03425 PF01420 Type I restriction modification DNA specificity domain SH05_RS03430 PF02384 N-6 DNA Methylase SH05_RS03435 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SH05_RS03435 PF04851 Type III restriction enzyme, res subunit SH05_RS03435 PF00271 Helicase conserved C-terminal domain SH05_RS03435 PF08463 EcoEI R protein C-terminal SH05_RS03440 PF07690 Major Facilitator Superfamily SH05_RS03445 PF00440 Bacterial regulatory proteins, tetR family SH05_RS03445 PF02909 Tetracyclin repressor-like, C-terminal domain SH05_RS03450 PF04471 Restriction endonuclease SH05_RS03450 PF14338 Mrr N-terminal domain SH05_RS03455 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH05_RS03455 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH05_RS03460 PF04328 Selenoprotein, putative SH05_RS03465 PF02554 Carbon starvation protein CstA SH05_RS03465 PF13722 5TM C-terminal transporter carbon starvation CstA SH05_RS03475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH05_RS03475 PF02203 Tar ligand binding domain homologue SH05_RS03475 PF00672 HAMP domain SH05_RS03480 PF07690 Major Facilitator Superfamily SH05_RS03485 PF00392 Bacterial regulatory proteins, gntR family SH05_RS03485 PF07729 FCD domain SH05_RS03490 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS03490 PF00107 Zinc-binding dehydrogenase SH05_RS03495 PF00884 Sulfatase SH05_RS03500 PF10696 Protein of unknown function (DUF2501) SH05_RS03505 PF01695 IstB-like ATP binding protein SH05_RS03510 PF17948 DnaT DNA-binding domain SH05_RS03515 PF12821 Threonine/Serine exporter, ThrE SH05_RS03520 PF06738 Putative threonine/serine exporter SH05_RS03525 PF00196 Bacterial regulatory proteins, luxR family SH05_RS03530 PF00196 Bacterial regulatory proteins, luxR family SH05_RS03535 PF11575 FhuF 2Fe-2S C-terminal domain SH05_RS03535 PF06276 Ferric iron reductase FhuF-like transporter SH05_RS03540 PF07256 Protein of unknown function (DUF1435) SH05_RS03560 PF08468 Methyltransferase small domain N-terminal SH05_RS03560 PF05175 Methyltransferase small domain SH05_RS03565 PF03603 DNA polymerase III psi subunit SH05_RS03570 PF00583 Acetyltransferase (GNAT) family SH05_RS03575 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS03580 PF00009 Elongation factor Tu GTP binding domain SH05_RS03580 PF03144 Elongation factor Tu domain 2 SH05_RS03580 PF16658 Class II release factor RF3, C-terminal domain SH05_RS03585 PF04972 BON domain SH05_RS03590 PF07043 Protein of unknown function (DUF1328) SH05_RS03595 PF01734 Patatin-like phospholipase SH05_RS03600 PF01026 TatD related DNase SH05_RS03605 PF04055 Radical SAM superfamily SH05_RS03610 PF11230 Protein of unknown function (DUF3029) SH05_RS03620 PF01791 DeoC/LacD family aldolase SH05_RS03625 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SH05_RS03625 PF00591 Glycosyl transferase family, a/b domain SH05_RS03625 PF02885 Glycosyl transferase family, helical bundle domain SH05_RS03630 PF01676 Metalloenzyme superfamily SH05_RS03635 PF01048 Phosphorylase superfamily SH05_RS03640 PF07804 HipA-like C-terminal domain SH05_RS03645 PF03099 Biotin/lipoate A/B protein ligase family SH05_RS03645 PF10437 Bacterial lipoate protein ligase C-terminus SH05_RS03650 PF10144 Bacterial virulence factor haemolysin SH05_RS03655 PF18429 Domain of unknown function (DUF5609) SH05_RS03660 PF18073 Rubredoxin metal binding domain SH05_RS03665 PF01381 Helix-turn-helix SH05_RS03665 PF13521 AAA domain SH05_RS03675 PF00005 ABC transporter SH05_RS03675 PF12848 ABC transporter SH05_RS03680 PF01464 Transglycosylase SLT domain SH05_RS03680 PF14718 Soluble lytic murein transglycosylase L domain SH05_RS03685 PF01371 Trp repressor protein SH05_RS03690 PF01931 Protein of unknown function DUF84 SH05_RS03695 PF00300 Histidine phosphatase superfamily (branch 1) SH05_RS03700 PF12833 Helix-turn-helix domain SH05_RS03700 PF06445 GyrI-like small molecule binding domain SH05_RS03705 PF05981 CreA protein SH05_RS03710 PF00486 Transcriptional regulatory protein, C terminal SH05_RS03710 PF00072 Response regulator receiver domain SH05_RS03715 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS03715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS03715 PF00672 HAMP domain SH05_RS03720 PF06123 Inner membrane protein CreD SH05_RS03725 PF00072 Response regulator receiver domain SH05_RS03725 PF00486 Transcriptional regulatory protein, C terminal SH05_RS03735 PF00588 SpoU rRNA Methylase family SH05_RS03740 PF08254 Threonine leader peptide SH05_RS03745 PF00696 Amino acid kinase family SH05_RS03745 PF13840 ACT domain SH05_RS03745 PF01842 ACT domain SH05_RS03745 PF00742 Homoserine dehydrogenase SH05_RS03745 PF03447 Homoserine dehydrogenase, NAD binding domain SH05_RS03750 PF08544 GHMP kinases C terminal SH05_RS03750 PF00288 GHMP kinases N terminal domain SH05_RS03755 PF00291 Pyridoxal-phosphate dependent enzyme SH05_RS03755 PF14821 Threonine synthase N terminus SH05_RS03765 PF10697 Protein of unknown function (DUF2502) SH05_RS03770 PF03883 Peroxide stress protein YaaA SH05_RS03775 PF01235 Sodium:alanine symporter family SH05_RS03780 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH05_RS03785 PF00994 Probable molybdopterin binding domain SH05_RS03790 PF01184 GPR1/FUN34/yaaH family SH05_RS03795 PF03981 Ubiquinol-cytochrome C chaperone SH05_RS03795 PF13099 Domain of unknown function (DUF3944) SH05_RS03800 PF10807 Protein of unknown function (DUF2541) SH05_RS03805 PF00012 Hsp70 protein SH05_RS03810 PF00226 DnaJ domain SH05_RS03810 PF00684 DnaJ central domain SH05_RS03810 PF01556 DnaJ C terminal domain SH05_RS03815 PF01609 Transposase DDE domain SH05_RS03820 PF01848 Hok/gef family SH05_RS03825 PF06965 Na+/H+ antiporter 1 SH05_RS03830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS03830 PF03466 LysR substrate binding domain SH05_RS03835 PF03400 IS1 transposase SH05_RS03840 PF01649 Ribosomal protein S20 SH05_RS03845 PF10837 Protein of unknown function (DUF2575) SH05_RS03850 PF01687 Riboflavin kinase SH05_RS03850 PF06574 FAD synthetase SH05_RS03855 PF08264 Anticodon-binding domain of tRNA SH05_RS03855 PF00133 tRNA synthetases class I (I, L, M and V) SH05_RS03855 PF06827 Zinc finger found in FPG and IleRS SH05_RS03860 PF01252 Signal peptidase (SPase) II SH05_RS03865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH05_RS03870 PF02401 LytB protein SH05_RS03875 PF01156 Inosine-uridine preferring nucleoside hydrolase SH05_RS03880 PF05173 Dihydrodipicolinate reductase, C-terminus SH05_RS03880 PF01113 Dihydrodipicolinate reductase, N-terminus SH05_RS03895 PF00117 Glutamine amidotransferase class-I SH05_RS03895 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SH05_RS03900 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH05_RS03900 PF02142 MGS-like domain SH05_RS03900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH05_RS03910 PF07180 CaiF/GrlA transcriptional regulator SH05_RS03915 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS03920 PF00378 Enoyl-CoA hydratase/isomerase SH05_RS03925 PF13193 AMP-binding enzyme C-terminal domain SH05_RS03925 PF00501 AMP-binding enzyme SH05_RS03930 PF02515 CoA-transferase family III SH05_RS03935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH05_RS03935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH05_RS03935 PF02770 Acyl-CoA dehydrogenase, middle domain SH05_RS03940 PF02028 BCCT, betaine/carnitine/choline family transporter SH05_RS03945 PF01012 Electron transfer flavoprotein domain SH05_RS03950 PF01012 Electron transfer flavoprotein domain SH05_RS03950 PF00766 Electron transfer flavoprotein FAD-binding domain SH05_RS03955 PF01494 FAD binding domain SH05_RS03965 PF00083 Sugar (and other) transporter SH05_RS03970 PF02525 Flavodoxin-like fold SH05_RS03975 PF00999 Sodium/hydrogen exchanger family SH05_RS03975 PF02254 TrkA-N domain SH05_RS03980 PF00186 Dihydrofolate reductase SH05_RS03985 PF00149 Calcineurin-like phosphoesterase SH05_RS03990 PF04379 ApaG domain SH05_RS03995 PF00398 Ribosomal RNA adenine dimethylase SH05_RS04000 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SH05_RS04005 PF00639 PPIC-type PPIASE domain SH05_RS04005 PF09312 SurA N-terminal domain SH05_RS04010 PF04453 LPS transport system D SH05_RS04010 PF03968 OstA-like protein SH05_RS04015 PF00226 DnaJ domain SH05_RS04015 PF05099 Tellurite resistance protein TerB SH05_RS04025 PF00849 RNA pseudouridylate synthase SH05_RS04030 PF18339 RapA N-terminal Tudor like domain 1 SH05_RS04030 PF18337 RapA N-terminal Tudor like domain SH05_RS04030 PF00176 SNF2 family N-terminal domain SH05_RS04030 PF12137 RNA polymerase recycling family C-terminal SH05_RS04030 PF00271 Helicase conserved C-terminal domain SH05_RS04035 PF03104 DNA polymerase family B, exonuclease domain SH05_RS04035 PF00136 DNA polymerase family B SH05_RS04040 PF00596 Class II Aldolase and Adducin N-terminal domain SH05_RS04045 PF11762 L-arabinose isomerase C-terminal domain SH05_RS04045 PF02610 L-arabinose isomerase SH05_RS04050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH05_RS04055 PF12833 Helix-turn-helix domain SH05_RS04055 PF02311 AraC-like ligand binding domain SH05_RS04060 PF09335 SNARE associated Golgi protein SH05_RS04065 PF00005 ABC transporter SH05_RS04070 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS04080 PF12793 Sugar transport-related sRNA regulator N-term SH05_RS04080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS04090 PF07690 Major Facilitator Superfamily SH05_RS04095 PF00694 Aconitase C-terminal domain SH05_RS04100 PF00330 Aconitase family (aconitate hydratase) SH05_RS04105 PF00180 Isocitrate/isopropylmalate dehydrogenase SH05_RS04110 PF08502 LeuA allosteric (dimerisation) domain SH05_RS04110 PF00682 HMGL-like SH05_RS04115 PF08054 Leucine operon leader peptide SH05_RS04120 PF03466 LysR substrate binding domain SH05_RS04120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS04125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH05_RS04125 PF00205 Thiamine pyrophosphate enzyme, central domain SH05_RS04125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH05_RS04130 PF10369 Small subunit of acetolactate synthase SH05_RS04140 PF00356 Bacterial regulatory proteins, lacI family SH05_RS04140 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH05_RS04145 PF02381 MraZ protein, putative antitoxin-like SH05_RS04150 PF01795 MraW methylase family SH05_RS04155 PF04999 Cell division protein FtsL SH05_RS04160 PF03717 Penicillin-binding Protein dimerisation domain SH05_RS04160 PF00905 Penicillin binding protein transpeptidase domain SH05_RS04165 PF08245 Mur ligase middle domain SH05_RS04165 PF01225 Mur ligase family, catalytic domain SH05_RS04165 PF02875 Mur ligase family, glutamate ligase domain SH05_RS04170 PF01225 Mur ligase family, catalytic domain SH05_RS04170 PF08245 Mur ligase middle domain SH05_RS04170 PF02875 Mur ligase family, glutamate ligase domain SH05_RS04175 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SH05_RS04175 PF00953 Glycosyl transferase family 4 SH05_RS04180 PF08245 Mur ligase middle domain SH05_RS04180 PF02875 Mur ligase family, glutamate ligase domain SH05_RS04185 PF01098 Cell cycle protein SH05_RS04190 PF04101 Glycosyltransferase family 28 C-terminal domain SH05_RS04190 PF03033 Glycosyltransferase family 28 N-terminal domain SH05_RS04195 PF02875 Mur ligase family, glutamate ligase domain SH05_RS04195 PF01225 Mur ligase family, catalytic domain SH05_RS04195 PF08245 Mur ligase middle domain SH05_RS04200 PF07478 D-ala D-ala ligase C-terminus SH05_RS04200 PF01820 D-ala D-ala ligase N-terminus SH05_RS04205 PF08478 POTRA domain, FtsQ-type SH05_RS04205 PF03799 Cell division protein FtsQ SH05_RS04210 PF02491 SHS2 domain inserted in FTSA SH05_RS04215 PF00091 Tubulin/FtsZ family, GTPase domain SH05_RS04215 PF12327 FtsZ family, C-terminal domain SH05_RS04220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SH05_RS04225 PF06558 Secretion monitor precursor protein (SecM) SH05_RS04230 PF02810 SEC-C motif SH05_RS04230 PF01043 SecA preprotein cross-linking domain SH05_RS04230 PF07516 SecA Wing and Scaffold domain SH05_RS04230 PF07517 SecA DEAD-like domain SH05_RS04235 PF00293 NUDIX domain SH05_RS04245 PF03884 DNA gyrase inhibitor YacG SH05_RS04250 PF07072 Cell division protein SH05_RS04255 PF01121 Dephospho-CoA kinase SH05_RS04260 PF00478 IMP dehydrogenase / GMP reductase domain SH05_RS04265 PF00482 Type II secretion system (T2SS), protein F SH05_RS04270 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH05_RS04270 PF00437 Type II/IV secretion system protein SH05_RS04275 PF07963 Prokaryotic N-terminal methylation motif SH05_RS04285 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SH05_RS04285 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SH05_RS04290 PF01510 N-acetylmuramoyl-L-alanine amidase SH05_RS04295 PF17113 Regulatory signalling modulator protein AmpE SH05_RS04300 PF00324 Amino acid permease SH05_RS04305 PF07729 FCD domain SH05_RS04305 PF00392 Bacterial regulatory proteins, gntR family SH05_RS04310 PF17831 Pyruvate dehydrogenase E1 component middle domain SH05_RS04310 PF00456 Transketolase, thiamine diphosphate binding domain SH05_RS04315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH05_RS04315 PF00364 Biotin-requiring enzyme SH05_RS04315 PF02817 e3 binding domain SH05_RS04320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH05_RS04320 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS04325 PF11737 Protein of unknown function (DUF3300) SH05_RS04330 PF06434 Aconitate hydratase 2 N-terminus SH05_RS04330 PF11791 Aconitate B N-terminal domain SH05_RS04330 PF00330 Aconitase family (aconitate hydratase) SH05_RS04335 PF06062 Uncharacterised protein family (UPF0231) SH05_RS04340 PF02675 S-adenosylmethionine decarboxylase SH05_RS04345 PF17284 Spermidine synthase tetramerisation domain SH05_RS04350 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) SH05_RS04355 PF07732 Multicopper oxidase SH05_RS04355 PF00394 Multicopper oxidase SH05_RS04355 PF07731 Multicopper oxidase SH05_RS04360 PF01011 PQQ enzyme repeat SH05_RS04365 PF00156 Phosphoribosyl transferase domain SH05_RS04370 PF00484 Carbonic anhydrase SH05_RS04375 PF00005 ABC transporter SH05_RS04380 PF01061 ABC-2 type transporter SH05_RS04385 PF03610 PTS system fructose IIA component SH05_RS04390 PF01522 Polysaccharide deacetylase SH05_RS04395 PF02261 Aspartate decarboxylase SH05_RS04400 PF04754 Putative transposase, YhgA-like SH05_RS04405 PF02569 Pantoate-beta-alanine ligase SH05_RS04410 PF02548 Ketopantoate hydroxymethyltransferase SH05_RS04415 PF00419 Fimbrial protein SH05_RS04420 PF00419 Fimbrial protein SH05_RS04425 PF00419 Fimbrial protein SH05_RS04430 PF00419 Fimbrial protein SH05_RS04435 PF00577 Outer membrane usher protein SH05_RS04435 PF13954 PapC N-terminal domain SH05_RS04435 PF13953 PapC C-terminal domain SH05_RS04440 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS04440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS04445 PF00419 Fimbrial protein SH05_RS04450 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SH05_RS04455 PF01743 Poly A polymerase head domain SH05_RS04455 PF12627 Probable RNA and SrmB- binding site of polymerase A SH05_RS04455 PF12626 Polymerase A arginine-rich C-terminus SH05_RS04460 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH05_RS04465 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH05_RS04470 PF17746 SfsA N-terminal OB domain SH05_RS04470 PF03749 Sugar fermentation stimulation protein RE domain SH05_RS04475 PF02834 LigT like Phosphoesterase SH05_RS04480 PF00271 Helicase conserved C-terminal domain SH05_RS04480 PF08482 ATP-dependent helicase C-terminal SH05_RS04480 PF04408 Helicase associated domain (HA2) SH05_RS04480 PF00270 DEAD/DEAH box helicase SH05_RS04490 PF00905 Penicillin binding protein transpeptidase domain SH05_RS04490 PF14814 Bifunctional transglycosylase second domain SH05_RS04490 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal SH05_RS04490 PF00912 Transglycosylase SH05_RS04495 PF07715 TonB-dependent Receptor Plug Domain SH05_RS04495 PF00593 TonB dependent receptor SH05_RS04500 PF13276 HTH-like domain SH05_RS04500 PF00665 Integrase core domain SH05_RS04505 PF01527 Transposase SH05_RS04510 PF00593 TonB dependent receptor SH05_RS04510 PF07715 TonB-dependent Receptor Plug Domain SH05_RS04515 PF00005 ABC transporter SH05_RS04520 PF01497 Periplasmic binding protein SH05_RS04525 PF01032 FecCD transport family SH05_RS04530 PF00202 Aminotransferase class-III SH05_RS04535 PF00654 Voltage gated chloride channel SH05_RS04540 PF01521 Iron-sulphur cluster biosynthesis SH05_RS04545 PF03458 UPF0126 domain SH05_RS04550 PF01497 Periplasmic binding protein SH05_RS04555 PF01048 Phosphorylase superfamily SH05_RS04560 PF13286 Phosphohydrolase-associated domain SH05_RS04560 PF01966 HD domain SH05_RS04565 PF00595 PDZ domain SH05_RS04570 PF05651 Putative sugar diacid recognition SH05_RS04570 PF17853 GGDEF-like domain SH05_RS04570 PF13556 PucR C-terminal helix-turn-helix domain SH05_RS04575 PF11944 Protein of unknown function (DUF3461) SH05_RS04580 PF00149 Calcineurin-like phosphoesterase SH05_RS04585 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS04585 PF14602 Hexapeptide repeat of succinyl-transferase SH05_RS04585 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SH05_RS04590 PF01966 HD domain SH05_RS04590 PF08335 GlnD PII-uridylyltransferase SH05_RS04590 PF01909 Nucleotidyltransferase domain SH05_RS04590 PF01842 ACT domain SH05_RS04595 PF00557 Metallopeptidase family M24 SH05_RS04600 PF00318 Ribosomal protein S2 SH05_RS04605 PF00889 Elongation factor TS SH05_RS04610 PF00696 Amino acid kinase family SH05_RS04615 PF01765 Ribosome recycling factor SH05_RS04620 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SH05_RS04620 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SH05_RS04620 PF13288 DXP reductoisomerase C-terminal domain SH05_RS04625 PF01255 Putative undecaprenyl diphosphate synthase SH05_RS04635 PF17820 PDZ domain SH05_RS04635 PF02163 Peptidase family M50 SH05_RS04640 PF01103 Surface antigen SH05_RS04640 PF07244 Surface antigen variable number repeat SH05_RS04645 PF03938 Outer membrane protein (OmpH-like) SH05_RS04650 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SH05_RS04650 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS04655 PF07977 FabA-like domain SH05_RS04660 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SH05_RS04660 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS04665 PF02684 Lipid-A-disaccharide synthetase SH05_RS04670 PF01351 Ribonuclease HII SH05_RS04675 PF14579 Helix-hairpin-helix motif SH05_RS04675 PF02811 PHP domain SH05_RS04675 PF01336 OB-fold nucleic acid binding domain SH05_RS04675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SH05_RS04675 PF07733 Bacterial DNA polymerase III alpha NTPase domain SH05_RS04680 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SH05_RS04685 PF01276 Orn/Lys/Arg decarboxylase, major domain SH05_RS04685 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH05_RS04685 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH05_RS04690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH05_RS04695 PF09179 TilS substrate binding domain SH05_RS04695 PF11734 TilS substrate C-terminal domain SH05_RS04695 PF01171 PP-loop family SH05_RS04700 PF07073 Modulator of Rho-dependent transcription termination (ROF) SH05_RS04705 PF06786 Uncharacterised protein family (UPF0253) SH05_RS04710 PF07152 YaeQ protein SH05_RS04715 PF00472 RF-1 domain SH05_RS04720 PF04170 NlpE N-terminal domain SH05_RS04720 PF17185 NlpE C-terminal OB domain SH05_RS04725 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH05_RS04730 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH05_RS04730 PF04073 Aminoacyl-tRNA editing domain SH05_RS04730 PF03129 Anticodon binding domain SH05_RS04735 PF01980 tRNA-methyltransferase O SH05_RS04735 PF18389 TrmO C-terminal domain SH05_RS04740 PF16358 RcsF lipoprotein SH05_RS04745 PF03180 NLPA lipoprotein SH05_RS04750 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS04755 PF00005 ABC transporter SH05_RS04755 PF09383 NIL domain SH05_RS04795 PF00248 Aldo/keto reductase family SH05_RS04800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS04800 PF03466 LysR substrate binding domain SH05_RS04805 PF03372 Endonuclease/Exonuclease/phosphatase family SH05_RS04810 PF08241 Methyltransferase domain SH05_RS04815 PF01464 Transglycosylase SLT domain SH05_RS04815 PF01476 LysM domain SH05_RS04820 PF16123 Hydroxyacylglutathione hydrolase C-terminus SH05_RS04820 PF00753 Metallo-beta-lactamase superfamily SH05_RS04825 PF08241 Methyltransferase domain SH05_RS04830 PF00075 RNase H SH05_RS04835 PF00929 Exonuclease SH05_RS04860 PF13808 DDE_Tnp_1-associated SH05_RS04860 PF01609 Transposase DDE domain SH05_RS04865 PF00795 Carbon-nitrogen hydrolase SH05_RS04875 PF09317 Domain of unknown function (DUF1974) SH05_RS04875 PF02770 Acyl-CoA dehydrogenase, middle domain SH05_RS04875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH05_RS04875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH05_RS04880 PF13580 SIS domain SH05_RS04885 PF13230 Glutamine amidotransferases class-II SH05_RS04890 PF03734 L,D-transpeptidase catalytic domain SH05_RS04895 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SH05_RS04900 PF04221 RelB antitoxin SH05_RS04905 PF00877 NlpC/P60 family SH05_RS04915 PF00771 FHIPEP family SH05_RS04920 PF00691 OmpA family SH05_RS04920 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH05_RS04925 PF00817 impB/mucB/samB family SH05_RS04925 PF11799 impB/mucB/samB family C-terminal domain SH05_RS04925 PF11798 IMS family HHH motif SH05_RS04935 PF13957 Toxin YafO, type II toxin-antitoxin system SH05_RS04940 PF13673 Acetyltransferase (GNAT) domain SH05_RS04950 PF00472 RF-1 domain SH05_RS04955 PF01546 Peptidase family M20/M25/M40 SH05_RS04955 PF07687 Peptidase dimerisation domain SH05_RS04960 PF00156 Phosphoribosyl transferase domain SH05_RS04965 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) SH05_RS04970 PF07417 Sigma factor-binding transcriptional regulator Crl SH05_RS04975 PF00267 Gram-negative porin SH05_RS04980 PF01472 PUA domain SH05_RS04980 PF00696 Amino acid kinase family SH05_RS04985 PF00171 Aldehyde dehydrogenase family SH05_RS04995 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH05_RS05000 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH05_RS05005 PF04002 RadC-like JAB domain SH05_RS05010 PF03230 Antirestriction protein SH05_RS05015 PF06006 Bacterial protein of unknown function (DUF905) SH05_RS05035 PF06067 Domain of unknown function (DUF932) SH05_RS05040 PF01926 50S ribosome-binding GTPase SH05_RS05045 PF03466 LysR substrate binding domain SH05_RS05045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS05050 PF01527 Transposase SH05_RS05055 PF13936 Helix-turn-helix domain SH05_RS05055 PF00665 Integrase core domain SH05_RS05075 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SH05_RS05080 PF01609 Transposase DDE domain SH05_RS05080 PF05598 Transposase domain (DUF772) SH05_RS05085 PF00324 Amino acid permease SH05_RS05090 PF02574 Homocysteine S-methyltransferase SH05_RS05095 PF00005 ABC transporter SH05_RS05095 PF08402 TOBE domain SH05_RS05100 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS05105 PF03400 IS1 transposase SH05_RS05110 PF03811 InsA N-terminal domain SH05_RS05110 PF12759 InsA C-terminal domain SH05_RS05115 PF01527 Transposase SH05_RS05120 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH05_RS05125 PF00665 Integrase core domain SH05_RS05130 PF00701 Dihydrodipicolinate synthetase family SH05_RS05135 PF00920 Dehydratase family SH05_RS05145 PF04616 Glycosyl hydrolases family 43 SH05_RS05145 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SH05_RS05150 PF09339 IclR helix-turn-helix domain SH05_RS05150 PF01614 Bacterial transcriptional regulator SH05_RS05155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH05_RS05155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH05_RS05160 PF03400 IS1 transposase SH05_RS05175 PF07638 ECF sigma factor SH05_RS05195 PF00589 Phage integrase family SH05_RS05195 PF13356 Arm DNA-binding domain SH05_RS05205 PF03466 LysR substrate binding domain SH05_RS05210 PF13478 XdhC Rossmann domain SH05_RS05210 PF02625 XdhC and CoxI family SH05_RS05215 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH05_RS05215 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH05_RS05220 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH05_RS05220 PF00941 FAD binding domain in molybdopterin dehydrogenase SH05_RS05225 PF01799 [2Fe-2S] binding domain SH05_RS05225 PF00111 2Fe-2S iron-sulfur cluster binding domain SH05_RS05230 PF07274 Protein of unknown function (DUF1440) SH05_RS05235 PF03692 Putative zinc- or iron-chelating domain SH05_RS05250 PF15976 CS1-pili formation C-terminal SH05_RS05250 PF16967 E-set like domain SH05_RS05255 PF18649 EcpB C-terminal domain SH05_RS05260 PF16449 Fimbrillin MatB SH05_RS05265 PF00196 Bacterial regulatory proteins, luxR family SH05_RS05275 PF00444 Ribosomal protein L36 SH05_RS05280 PF01197 Ribosomal protein L31 SH05_RS05290 PF11924 Inverse autotransporter, beta-domain SH05_RS05295 PF01527 Transposase SH05_RS05300 PF00665 Integrase core domain SH05_RS05300 PF13333 Integrase core domain SH05_RS05300 PF13276 HTH-like domain SH05_RS05305 PF12833 Helix-turn-helix domain SH05_RS05310 PF04224 Protein of unknown function, DUF417 SH05_RS05315 PF07338 Protein of unknown function (DUF1471) SH05_RS05320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH05_RS05320 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS05325 PF12833 Helix-turn-helix domain SH05_RS05325 PF12852 Cupin SH05_RS05330 PF02754 Cysteine-rich domain SH05_RS05335 PF02589 LUD domain SH05_RS05335 PF11870 Domain of unknown function (DUF3390) SH05_RS05335 PF13183 4Fe-4S dicluster domain SH05_RS05340 PF02589 LUD domain SH05_RS05355 PF05199 GMC oxidoreductase SH05_RS05355 PF00732 GMC oxidoreductase SH05_RS05360 PF00171 Aldehyde dehydrogenase family SH05_RS05365 PF13977 BetI-type transcriptional repressor, C-terminal SH05_RS05365 PF00440 Bacterial regulatory proteins, tetR family SH05_RS05370 PF02028 BCCT, betaine/carnitine/choline family transporter SH05_RS05380 PF00196 Bacterial regulatory proteins, luxR family SH05_RS05380 PF00563 EAL domain SH05_RS05385 PF03466 LysR substrate binding domain SH05_RS05385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS05390 PF06496 Protein of unknown function (DUF1097) SH05_RS05395 PF12796 Ankyrin repeats (3 copies) SH05_RS05400 PF11392 Protein of unknown function (DUF2877) SH05_RS05405 PF02629 CoA binding domain SH05_RS05405 PF00549 CoA-ligase SH05_RS05410 PF06545 Protein of unknown function (DUF1116) SH05_RS05420 PF00696 Amino acid kinase family SH05_RS05425 PF07969 Amidohydrolase family SH05_RS05430 PF00107 Zinc-binding dehydrogenase SH05_RS05430 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS05445 PF01810 LysE type translocator SH05_RS05450 PF07338 Protein of unknown function (DUF1471) SH05_RS05455 PF00158 Sigma-54 interaction domain SH05_RS05455 PF02954 Bacterial regulatory protein, Fis family SH05_RS05455 PF06506 Propionate catabolism activator SH05_RS05465 PF00285 Citrate synthase, C-terminal domain SH05_RS05470 PF03972 MmgE/PrpD family SH05_RS05475 PF16177 Acetyl-coenzyme A synthetase N-terminus SH05_RS05475 PF13193 AMP-binding enzyme C-terminal domain SH05_RS05475 PF00501 AMP-binding enzyme SH05_RS05480 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH05_RS05485 PF07969 Amidohydrolase family SH05_RS05490 PF03466 LysR substrate binding domain SH05_RS05490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS05495 PF00484 Carbonic anhydrase SH05_RS05500 PF02560 Cyanate lyase C-terminal domain SH05_RS05505 PF07690 Major Facilitator Superfamily SH05_RS05510 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS05510 PF12464 Maltose acetyltransferase SH05_RS05515 PF01306 LacY proton/sugar symporter SH05_RS05520 PF02929 Beta galactosidase small chain SH05_RS05520 PF16353 Domain of unknown function(DUF4981) SH05_RS05520 PF00703 Glycosyl hydrolases family 2 SH05_RS05520 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH05_RS05520 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH05_RS05525 PF00356 Bacterial regulatory proteins, lacI family SH05_RS05530 PF09339 IclR helix-turn-helix domain SH05_RS05530 PF01614 Bacterial transcriptional regulator SH05_RS05535 PF01494 FAD binding domain SH05_RS05540 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH05_RS05545 PF12697 Alpha/beta hydrolase family SH05_RS05550 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH05_RS05555 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH05_RS05555 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation SH05_RS05560 PF00682 HMGL-like SH05_RS05560 PF07836 DmpG-like communication domain SH05_RS05565 PF07690 Major Facilitator Superfamily SH05_RS05570 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) SH05_RS05575 PF00756 Putative esterase SH05_RS05580 PF00107 Zinc-binding dehydrogenase SH05_RS05580 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS05585 PF02583 Metal-sensitive transcriptional repressor SH05_RS05595 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS05600 PF01527 Transposase SH05_RS05605 PF00665 Integrase core domain SH05_RS05605 PF13276 HTH-like domain SH05_RS05610 PF00535 Glycosyl transferase family 2 SH05_RS05615 PF02585 GlcNAc-PI de-N-acetylase SH05_RS05620 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH05_RS05625 PF00005 ABC transporter SH05_RS05630 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS05635 PF02668 Taurine catabolism dioxygenase TauD, TfdA family SH05_RS05640 PF00490 Delta-aminolevulinic acid dehydratase SH05_RS05655 PF13276 HTH-like domain SH05_RS05655 PF13333 Integrase core domain SH05_RS05655 PF00665 Integrase core domain SH05_RS05660 PF01527 Transposase SH05_RS05665 PF03212 Pertactin SH05_RS05665 PF03797 Autotransporter beta-domain SH05_RS05670 PF15977 Winged helix-turn-helix DNA binding SH05_RS05675 PF00144 Beta-lactamase SH05_RS05685 PF05992 SbmA/BacA-like family SH05_RS05690 PF07759 Protein of unknown function (DUF1615) SH05_RS05695 PF10954 Protein of unknown function (DUF2755) SH05_RS05700 PF10953 Protein of unknown function (DUF2754) SH05_RS05705 PF07478 D-ala D-ala ligase C-terminus SH05_RS05705 PF01820 D-ala D-ala ligase N-terminus SH05_RS05715 PF10796 Sigma-S stabilisation anti-adaptor protein SH05_RS05720 PF00245 Alkaline phosphatase SH05_RS05725 PF07769 psiF repeat SH05_RS05730 PF05230 MASE2 domain SH05_RS05730 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS05735 PF14748 Pyrroline-5-carboxylate reductase dimerisation SH05_RS05735 PF03807 NADP oxidoreductase coenzyme F420-dependent SH05_RS05740 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SH05_RS05745 PF01202 Shikimate kinase SH05_RS05750 PF16362 YaiA protein SH05_RS05760 PF07302 AroM protein SH05_RS05765 PF06865 Pyrimidine/purine nucleoside phosphorylase SH05_RS05770 PF10971 Protein of unknown function (DUF2773) SH05_RS05775 PF04381 Putative exonuclease, RdgC SH05_RS05780 PF00480 ROK family SH05_RS05785 PF07690 Major Facilitator Superfamily SH05_RS05790 PF13476 AAA domain SH05_RS05795 PF00149 Calcineurin-like phosphoesterase SH05_RS05795 PF12320 Type 5 capsule protein repressor C-terminal domain SH05_RS05800 PF00072 Response regulator receiver domain SH05_RS05800 PF00486 Transcriptional regulatory protein, C terminal SH05_RS05805 PF00989 PAS fold SH05_RS05805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS05805 PF11808 Phosphate regulon sensor protein PhoR SH05_RS05805 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS05810 PF05525 Branched-chain amino acid transport protein SH05_RS05815 PF00324 Amino acid permease SH05_RS05820 PF02903 Alpha amylase, N-terminal ig-like domain SH05_RS05820 PF00128 Alpha amylase, catalytic domain SH05_RS05825 PF04336 Acyl carrier protein phosphodiesterase SH05_RS05830 PF02547 Queuosine biosynthesis protein SH05_RS05835 PF01702 Queuine tRNA-ribosyltransferase SH05_RS05840 PF02699 Preprotein translocase subunit SH05_RS05845 PF02355 Protein export membrane protein SH05_RS05845 PF07549 SecD/SecF GG Motif SH05_RS05845 PF13721 SecD export protein N-terminal TM region SH05_RS05850 PF02355 Protein export membrane protein SH05_RS05850 PF07549 SecD/SecF GG Motif SH05_RS05855 PF01844 HNH endonuclease SH05_RS05865 PF03502 Nucleoside-specific channel-forming protein, Tsx SH05_RS05870 PF11622 Protein of unknown function (DUF3251) SH05_RS05875 PF03477 ATP cone domain SH05_RS05880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH05_RS05880 PF01872 RibD C-terminal domain SH05_RS05885 PF00885 6,7-dimethyl-8-ribityllumazine synthase SH05_RS05890 PF01029 NusB family SH05_RS05895 PF02769 AIR synthase related protein, C-terminal domain SH05_RS05895 PF00586 AIR synthase related protein, N-terminal domain SH05_RS05900 PF04608 Phosphatidylglycerophosphatase A SH05_RS05905 PF00248 Aldo/keto reductase family SH05_RS05910 PF02780 Transketolase, C-terminal domain SH05_RS05910 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SH05_RS05910 PF02779 Transketolase, pyrimidine binding domain SH05_RS05915 PF00348 Polyprenyl synthetase SH05_RS05920 PF02609 Exonuclease VII small subunit SH05_RS05925 PF02926 THUMP domain SH05_RS05925 PF02568 Thiamine biosynthesis protein (ThiI) SH05_RS05930 PF01965 DJ-1/PfpI family SH05_RS05935 PF08546 Ketopantoate reductase PanE/ApbA C terminal SH05_RS05935 PF02558 Ketopantoate reductase PanE/ApbA SH05_RS05940 PF04461 Protein of unknown function (DUF520) SH05_RS05945 PF07690 Major Facilitator Superfamily SH05_RS05950 PF01040 UbiA prenyltransferase family SH05_RS05955 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SH05_RS05960 PF00510 Cytochrome c oxidase subunit III SH05_RS05965 PF00115 Cytochrome C and Quinol oxidase polypeptide I SH05_RS05970 PF06481 COX Aromatic Rich Motif SH05_RS05970 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SH05_RS05975 PF07690 Major Facilitator Superfamily SH05_RS05980 PF03923 Uncharacterized lipoprotein SH05_RS05980 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SH05_RS05985 PF01722 BolA-like protein SH05_RS05995 PF05698 Bacterial trigger factor protein (TF) C-terminus SH05_RS05995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH05_RS05995 PF05697 Bacterial trigger factor protein (TF) SH05_RS06000 PF00574 Clp protease SH05_RS06005 PF06689 ClpX C4-type zinc finger SH05_RS06005 PF10431 C-terminal, D2-small domain, of ClpB protein SH05_RS06005 PF07724 AAA domain (Cdc48 subfamily) SH05_RS06010 PF00004 ATPase family associated with various cellular activities (AAA) SH05_RS06010 PF02190 ATP-dependent protease La (LON) substrate-binding domain SH05_RS06010 PF05362 Lon protease (S16) C-terminal proteolytic domain SH05_RS06015 PF00216 Bacterial DNA-binding protein SH05_RS06020 PF13145 PPIC-type PPIASE domain SH05_RS06035 PF06508 Queuosine biosynthesis protein QueC SH05_RS06040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS06040 PF12793 Sugar transport-related sRNA regulator N-term SH05_RS06050 PF01037 Lrp/AsnC ligand binding domain SH05_RS06050 PF13404 AsnC-type helix-turn-helix domain SH05_RS06055 PF00005 ABC transporter SH05_RS06055 PF00664 ABC transporter transmembrane region SH05_RS06060 PF00005 ABC transporter SH05_RS06060 PF00664 ABC transporter transmembrane region SH05_RS06065 PF00543 Nitrogen regulatory protein P-II SH05_RS06070 PF00909 Ammonium Transporter Family SH05_RS06080 PF09619 Type III secretion system lipoprotein chaperone (YscW) SH05_RS06085 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH05_RS06090 PF07237 Protein of unknown function (DUF1428) SH05_RS06095 PF00563 EAL domain SH05_RS06095 PF12792 CSS motif domain associated with EAL SH05_RS06100 PF10777 Inner membrane protein YlaC SH05_RS06105 PF14602 Hexapeptide repeat of succinyl-transferase SH05_RS06105 PF12464 Maltose acetyltransferase SH05_RS06110 PF05321 Haemolysin expression modulating protein SH05_RS06115 PF10757 Biofilm formation regulator YbaJ SH05_RS06120 PF00873 AcrB/AcrD/AcrF family SH05_RS06125 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS06125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS06130 PF08361 MAATS-type transcriptional repressor, C-terminal region SH05_RS06130 PF00440 Bacterial regulatory proteins, tetR family SH05_RS06135 PF12795 Mechanosensitive ion channel porin domain SH05_RS06135 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH05_RS06135 PF00924 Mechanosensitive ion channel SH05_RS06145 PF10689 Protein of unknown function (DUF2496) SH05_RS06150 PF07445 Primosomal replication protein priC SH05_RS06155 PF04304 Protein of unknown function (DUF454) SH05_RS06160 PF00156 Phosphoribosyl transferase domain SH05_RS06165 PF12170 DNA polymerase III tau subunit V interacting with alpha SH05_RS06165 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SH05_RS06165 PF12169 DNA polymerase III subunits gamma and tau domain III SH05_RS06170 PF02575 YbaB/EbfC DNA-binding family SH05_RS06175 PF02132 RecR protein SH05_RS06175 PF13662 Toprim domain SH05_RS06180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS06180 PF00183 Hsp90 protein SH05_RS06185 PF05191 Adenylate kinase, active site lid SH05_RS06190 PF00762 Ferrochelatase SH05_RS06195 PF07859 alpha/beta hydrolase fold SH05_RS06200 PF00294 pfkB family carbohydrate kinase SH05_RS06205 PF02254 TrkA-N domain SH05_RS06205 PF00999 Sodium/hydrogen exchanger family SH05_RS06210 PF07690 Major Facilitator Superfamily SH05_RS06215 PF02872 5'-nucleotidase, C-terminal domain SH05_RS06215 PF00149 Calcineurin-like phosphoesterase SH05_RS06220 PF04073 Aminoacyl-tRNA editing domain SH05_RS06225 PF01963 TraB family SH05_RS06230 PF01381 Helix-turn-helix SH05_RS06235 PF00403 Heavy-metal-associated domain SH05_RS06240 PF04960 Glutaminase SH05_RS06245 PF13520 Amino acid permease SH05_RS06250 PF13411 MerR HTH family regulatory protein SH05_RS06255 PF01957 NfeD-like C-terminal, partner-binding SH05_RS06260 PF16200 C-terminal region of band_7 SH05_RS06260 PF01145 SPFH domain / Band 7 family SH05_RS06265 PF00005 ABC transporter SH05_RS06270 PF03649 Uncharacterised protein family (UPF0014) SH05_RS06275 PF00085 Thioredoxin SH05_RS06280 PF00106 short chain dehydrogenase SH05_RS06285 PF13472 GDSL-like Lipase/Acylhydrolase family SH05_RS06290 PF00005 ABC transporter SH05_RS06300 PF05593 RHS Repeat SH05_RS06300 PF14220 Domain of unknown function (DUF4329) SH05_RS06300 PF03527 RHS protein SH05_RS06305 PF15631 NTF2 fold immunity protein SH05_RS06310 PF03527 RHS protein SH05_RS06330 PF03466 LysR substrate binding domain SH05_RS06330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS06335 PF04115 Ureidoglycolate lyase SH05_RS06340 PF09339 IclR helix-turn-helix domain SH05_RS06340 PF01614 Bacterial transcriptional regulator SH05_RS06345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH05_RS06345 PF00205 Thiamine pyrophosphate enzyme, central domain SH05_RS06345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH05_RS06350 PF01261 Xylose isomerase-like TIM barrel SH05_RS06355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH05_RS06355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH05_RS06360 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH05_RS06365 PF01979 Amidohydrolase family SH05_RS06370 PF00860 Permease family SH05_RS06375 PF02595 Glycerate kinase family SH05_RS06380 PF07883 Cupin domain SH05_RS06380 PF05899 Protein of unknown function (DUF861) SH05_RS06385 PF01546 Peptidase family M20/M25/M40 SH05_RS06390 PF02615 Malate/L-lactate dehydrogenase SH05_RS06395 PF02629 CoA binding domain SH05_RS06395 PF00549 CoA-ligase SH05_RS06400 PF06545 Protein of unknown function (DUF1116) SH05_RS06405 PF11392 Protein of unknown function (DUF2877) SH05_RS06410 PF00696 Amino acid kinase family SH05_RS06415 PF02222 ATP-grasp domain SH05_RS06415 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SH05_RS06420 PF00731 AIR carboxylase SH05_RS06425 PF12850 Calcineurin-like phosphoesterase superfamily domain SH05_RS06430 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH05_RS06435 PF01406 tRNA synthetases class I (C) catalytic domain SH05_RS06435 PF09190 DALR domain SH05_RS06440 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH05_RS06450 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SH05_RS06450 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SH05_RS06455 PF00419 Fimbrial protein SH05_RS06460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS06460 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS06465 PF13954 PapC N-terminal domain SH05_RS06465 PF13953 PapC C-terminal domain SH05_RS06465 PF00577 Outer membrane usher protein SH05_RS06470 PF00419 Fimbrial protein SH05_RS06475 PF00419 Fimbrial protein SH05_RS06480 PF00196 Bacterial regulatory proteins, luxR family SH05_RS06480 PF00072 Response regulator receiver domain SH05_RS06490 PF00589 Phage integrase family SH05_RS06500 PF06992 Replication protein P SH05_RS06510 PF01527 Transposase SH05_RS06515 PF00665 Integrase core domain SH05_RS06515 PF13333 Integrase core domain SH05_RS06515 PF13276 HTH-like domain SH05_RS06525 PF00893 Small Multidrug Resistance protein SH05_RS06535 PF07508 Recombinase SH05_RS06535 PF00239 Resolvase, N terminal domain SH05_RS06535 PF13408 Recombinase zinc beta ribbon domain SH05_RS06540 PF01161 Phosphatidylethanolamine-binding protein SH05_RS06545 PF12833 Helix-turn-helix domain SH05_RS06560 PF07102 Protein of unknown function (DUF1364) SH05_RS06565 PF05866 Endodeoxyribonuclease RusA SH05_RS06575 PF06530 Phage antitermination protein Q SH05_RS06585 PF01609 Transposase DDE domain SH05_RS06585 PF05598 Transposase domain (DUF772) SH05_RS06590 PF07166 Protein of unknown function (DUF1398) SH05_RS06600 PF13132 Domain of unknown function (DUF3950) SH05_RS06615 PF03400 IS1 transposase SH05_RS06620 PF07471 Phage DNA packaging protein Nu1 SH05_RS06625 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH05_RS06630 PF08242 Methyltransferase domain SH05_RS06640 PF12833 Helix-turn-helix domain SH05_RS06645 PF01278 Omptin family SH05_RS06655 PF12833 Helix-turn-helix domain SH05_RS06660 PF14488 Domain of unknown function (DUF4434) SH05_RS06665 PF13283 Bacteriophage N adsorption protein A C-term SH05_RS06670 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH05_RS06670 PF13632 Glycosyl transferase family group 2 SH05_RS06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS06675 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS06675 PF00672 HAMP domain SH05_RS06680 PF00486 Transcriptional regulatory protein, C terminal SH05_RS06680 PF00072 Response regulator receiver domain SH05_RS06685 PF02321 Outer membrane efflux protein SH05_RS06690 PF11604 Copper binding periplasmic protein CusF SH05_RS06695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS06695 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS06700 PF00873 AcrB/AcrD/AcrF family SH05_RS06705 PF00324 Amino acid permease SH05_RS06710 PF00924 Mechanosensitive ion channel SH05_RS06715 PF00881 Nitroreductase family SH05_RS06720 PF04237 YjbR SH05_RS06725 PF06643 Protein of unknown function (DUF1158) SH05_RS06730 PF04107 Glutamate-cysteine ligase family 2(GCS2) SH05_RS06740 PF01848 Hok/gef family SH05_RS06745 PF01609 Transposase DDE domain SH05_RS06750 PF17837 4'-phosphopantetheinyl transferase N-terminal domain SH05_RS06750 PF01648 4'-phosphopantetheinyl transferase superfamily SH05_RS06755 PF00593 TonB dependent receptor SH05_RS06755 PF07715 TonB-dependent Receptor Plug Domain SH05_RS06760 PF00756 Putative esterase SH05_RS06760 PF11806 Domain of unknown function (DUF3327) SH05_RS06765 PF03621 MbtH-like protein SH05_RS06770 PF00501 AMP-binding enzyme SH05_RS06770 PF00668 Condensation domain SH05_RS06770 PF00550 Phosphopantetheine attachment site SH05_RS06770 PF00975 Thioesterase domain SH05_RS06770 PF13193 AMP-binding enzyme C-terminal domain SH05_RS06775 PF02706 Chain length determinant protein SH05_RS06780 PF00005 ABC transporter SH05_RS06785 PF01032 FecCD transport family SH05_RS06790 PF01032 FecCD transport family SH05_RS06795 PF05977 Transmembrane secretion effector SH05_RS06800 PF01497 Periplasmic binding protein SH05_RS06805 PF00425 chorismate binding enzyme SH05_RS06810 PF00501 AMP-binding enzyme SH05_RS06810 PF13193 AMP-binding enzyme C-terminal domain SH05_RS06815 PF00857 Isochorismatase family SH05_RS06815 PF00550 Phosphopantetheine attachment site SH05_RS06825 PF03061 Thioesterase superfamily SH05_RS06830 PF02554 Carbon starvation protein CstA SH05_RS06830 PF13722 5TM C-terminal transporter carbon starvation CstA SH05_RS06835 PF04328 Selenoprotein, putative SH05_RS06840 PF00465 Iron-containing alcohol dehydrogenase SH05_RS06845 PF00155 Aminotransferase class I and II SH05_RS06850 PF02195 ParB-like nuclease domain SH05_RS06855 PF01507 Phosphoadenosine phosphosulfate reductase family SH05_RS06855 PF11922 Domain of unknown function (DUF3440) SH05_RS06860 PF03466 LysR substrate binding domain SH05_RS06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS06865 PF13098 Thioredoxin-like domain SH05_RS06870 PF10417 C-terminal domain of 1-Cys peroxiredoxin SH05_RS06870 PF00578 AhpC/TSA family SH05_RS06875 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS06875 PF13192 Thioredoxin domain SH05_RS06880 PF00582 Universal stress protein family SH05_RS06885 PF13823 Alcohol dehydrogenase GroES-associated SH05_RS06885 PF00107 Zinc-binding dehydrogenase SH05_RS06885 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS06895 PF14760 Rnk N-terminus SH05_RS06895 PF01272 Transcription elongation factor, GreA/GreB, C-term SH05_RS06900 PF00445 Ribonuclease T2 family SH05_RS06905 PF00939 Sodium:sulfate symporter transmembrane region SH05_RS06910 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SH05_RS06915 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SH05_RS06920 PF04223 Citrate lyase, alpha subunit (CitF) SH05_RS06925 PF03328 HpcH/HpaI aldolase/citrate lyase family SH05_RS06930 PF06857 Malonate decarboxylase delta subunit (MdcD) SH05_RS06935 PF08218 Citrate lyase ligase C-terminal domain SH05_RS06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS06940 PF00989 PAS fold SH05_RS06940 PF17203 Single cache domain 3 SH05_RS06940 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH05_RS06945 PF00072 Response regulator receiver domain SH05_RS06945 PF12431 Transcriptional regulator SH05_RS06950 PF03606 C4-dicarboxylate anaerobic carrier SH05_RS06955 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP SH05_RS06960 PF00313 'Cold-shock' DNA-binding domain SH05_RS06965 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SH05_RS06975 PF02416 mttA/Hcf106 family SH05_RS06980 PF04055 Radical SAM superfamily SH05_RS06980 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SH05_RS06985 PF03466 LysR substrate binding domain SH05_RS06985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS06995 PF03099 Biotin/lipoate A/B protein ligase family SH05_RS07000 PF04359 Protein of unknown function (DUF493) SH05_RS07005 PF00768 D-alanyl-D-alanine carboxypeptidase SH05_RS07005 PF07943 Penicillin-binding protein 5, C-terminal domain SH05_RS07010 PF03330 Lytic transglycolase SH05_RS07010 PF05036 Sporulation related domain SH05_RS07015 PF01098 Cell cycle protein SH05_RS07020 PF00905 Penicillin binding protein transpeptidase domain SH05_RS07020 PF03717 Penicillin-binding Protein dimerisation domain SH05_RS07025 PF02590 Predicted SPOUT methyltransferase SH05_RS07035 PF00300 Histidine phosphatase superfamily (branch 1) SH05_RS07040 PF01467 Cytidylyltransferase-like SH05_RS07045 PF06144 DNA polymerase III, delta subunit SH05_RS07045 PF14840 Processivity clamp loader gamma complex DNA pol III C-term SH05_RS07050 PF04390 Lipopolysaccharide-assembly SH05_RS07055 PF08264 Anticodon-binding domain of tRNA SH05_RS07055 PF00133 tRNA synthetases class I (I, L, M and V) SH05_RS07055 PF13603 Leucyl-tRNA synthetase, Domain 2 SH05_RS07060 PF07295 Zinc-ribbon containing domain SH05_RS07065 PF08238 Sel1 repeat SH05_RS07070 PF06889 Protein of unknown function (DUF1266) SH05_RS07080 PF08238 Sel1 repeat SH05_RS07085 PF06889 Protein of unknown function (DUF1266) SH05_RS07095 PF00012 Hsp70 protein SH05_RS07100 PF01156 Inosine-uridine preferring nucleoside hydrolase SH05_RS07105 PF00005 ABC transporter SH05_RS07110 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS07115 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS07120 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS07125 PF01609 Transposase DDE domain SH05_RS07125 PF05598 Transposase domain (DUF772) SH05_RS07130 PF00795 Carbon-nitrogen hydrolase SH05_RS07135 PF00571 CBS domain SH05_RS07135 PF03471 Transporter associated domain SH05_RS07140 PF02130 Uncharacterized protein family UPF0054 SH05_RS07145 PF02562 PhoH-like protein SH05_RS07150 PF01938 TRAM domain SH05_RS07150 PF00919 Uncharacterized protein family UPF0004 SH05_RS07150 PF04055 Radical SAM superfamily SH05_RS07155 PF01494 FAD binding domain SH05_RS07195 PF13537 Glutamine amidotransferase domain SH05_RS07195 PF00733 Asparagine synthase SH05_RS07200 PF13344 Haloacid dehalogenase-like hydrolase SH05_RS07205 PF00480 ROK family SH05_RS07205 PF01047 MarR family SH05_RS07210 PF01979 Amidohydrolase family SH05_RS07215 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH05_RS07220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH05_RS07220 PF00367 phosphotransferase system, EIIB SH05_RS07220 PF02378 Phosphotransferase system, EIIC SH05_RS07225 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH05_RS07225 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SH05_RS07230 PF03573 outer membrane porin, OprD family SH05_RS07235 PF13982 YbfN-like lipoprotein SH05_RS07240 PF01475 Ferric uptake regulator family SH05_RS07255 PF00258 Flavodoxin SH05_RS07260 PF01402 Ribbon-helix-helix protein, copG family SH05_RS07265 PF12697 Alpha/beta hydrolase family SH05_RS07270 PF03925 SeqA protein C-terminal domain SH05_RS07270 PF17206 SeqA protein N-terminal domain SH05_RS07275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH05_RS07275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH05_RS07275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH05_RS07275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH05_RS07295 PF13520 Amino acid permease SH05_RS07300 PF01276 Orn/Lys/Arg decarboxylase, major domain SH05_RS07300 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH05_RS07300 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH05_RS07310 PF00486 Transcriptional regulatory protein, C terminal SH05_RS07310 PF00072 Response regulator receiver domain SH05_RS07315 PF13492 GAF domain SH05_RS07315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS07315 PF02702 Osmosensitive K+ channel His kinase sensor domain SH05_RS07315 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS07315 PF13493 Domain of unknown function (DUF4118) SH05_RS07320 PF02669 K+-transporting ATPase, c chain SH05_RS07330 PF03814 Potassium-transporting ATPase A subunit SH05_RS07335 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) SH05_RS07340 PF10725 Protein of unknown function (DUF2517) SH05_RS07345 PF05593 RHS Repeat SH05_RS07345 PF03527 RHS protein SH05_RS07355 PF03527 RHS protein SH05_RS07355 PF05593 RHS Repeat SH05_RS07365 PF13808 DDE_Tnp_1-associated SH05_RS07370 PF01609 Transposase DDE domain SH05_RS07370 PF13808 DDE_Tnp_1-associated SH05_RS07375 PF13808 DDE_Tnp_1-associated SH05_RS07375 PF01609 Transposase DDE domain SH05_RS07380 PF08349 Protein of unknown function (DUF1722) SH05_RS07385 PF00875 DNA photolyase SH05_RS07385 PF03441 FAD binding domain of DNA photolyase SH05_RS07390 PF00854 POT family SH05_RS07395 PF01784 NIF3 (NGG1p interacting factor 3) SH05_RS07400 PF02682 Carboxyltransferase domain, subdomain C and D SH05_RS07405 PF02626 Carboxyltransferase domain, subdomain A and B SH05_RS07410 PF03746 LamB/YcsF family SH05_RS07415 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH05_RS07415 PF06827 Zinc finger found in FPG and IleRS SH05_RS07415 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH05_RS07420 PF05145 Transition state regulatory protein AbrB SH05_RS07425 PF00419 Fimbrial protein SH05_RS07430 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS07430 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS07435 PF13953 PapC C-terminal domain SH05_RS07435 PF13954 PapC N-terminal domain SH05_RS07435 PF00577 Outer membrane usher protein SH05_RS07440 PF00419 Fimbrial protein SH05_RS07445 PF00285 Citrate synthase, C-terminal domain SH05_RS07455 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH05_RS07460 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH05_RS07465 PF00890 FAD binding domain SH05_RS07465 PF02910 Fumarate reductase flavoprotein C-term SH05_RS07470 PF13085 2Fe-2S iron-sulfur cluster binding domain SH05_RS07480 PF00676 Dehydrogenase E1 component SH05_RS07480 PF16870 2-oxoglutarate dehydrogenase C-terminal SH05_RS07480 PF02779 Transketolase, pyrimidine binding domain SH05_RS07480 PF16078 2-oxoglutarate dehydrogenase N-terminus SH05_RS07485 PF02817 e3 binding domain SH05_RS07485 PF00364 Biotin-requiring enzyme SH05_RS07485 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH05_RS07490 PF00549 CoA-ligase SH05_RS07490 PF08442 ATP-grasp domain SH05_RS07495 PF00549 CoA-ligase SH05_RS07495 PF02629 CoA binding domain SH05_RS07500 PF07702 UTRA domain SH05_RS07500 PF00392 Bacterial regulatory proteins, gntR family SH05_RS07505 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS07505 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS07505 PF02378 Phosphotransferase system, EIIC SH05_RS07510 PF01074 Glycosyl hydrolases family 38 N-terminal domain SH05_RS07510 PF07748 Glycosyl hydrolases family 38 C-terminal domain SH05_RS07510 PF09261 Alpha mannosidase middle domain SH05_RS07520 PF01654 Cytochrome bd terminal oxidase subunit I SH05_RS07525 PF02322 Cytochrome bd terminal oxidase subunit II SH05_RS07530 PF08173 Membrane bound YbgT-like protein SH05_RS07535 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) SH05_RS07540 PF03061 Thioesterase superfamily SH05_RS07545 PF01618 MotA/TolQ/ExbB proton channel family SH05_RS07550 PF02472 Biopolymer transport protein ExbD/TolR SH05_RS07555 PF06519 TolA C-terminal SH05_RS07560 PF07676 WD40-like Beta Propeller Repeat SH05_RS07560 PF04052 TolB amino-terminal domain SH05_RS07565 PF00691 OmpA family SH05_RS07570 PF16331 TolA binding protein trimerisation SH05_RS07570 PF13174 Tetratricopeptide repeat SH05_RS07610 PF02445 Quinolinate synthetase A protein SH05_RS07615 PF04973 Nicotinamide mononucleotide transporter SH05_RS07620 PF01545 Cation efflux family SH05_RS07625 PF13985 YbgS-like protein SH05_RS07635 PF00793 DAHP synthetase I family SH05_RS07640 PF00300 Histidine phosphatase superfamily (branch 1) SH05_RS07645 PF01263 Aldose 1-epimerase SH05_RS07650 PF00288 GHMP kinases N terminal domain SH05_RS07650 PF10509 Galactokinase galactose-binding signature SH05_RS07650 PF08544 GHMP kinases C terminal SH05_RS07655 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SH05_RS07655 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SH05_RS07660 PF16363 GDP-mannose 4,6 dehydratase SH05_RS07665 PF00005 ABC transporter SH05_RS07670 PF03459 TOBE domain SH05_RS07670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS07675 PF10766 Multidrug efflux pump-associated protein AcrZ SH05_RS07685 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS07690 PF03459 TOBE domain SH05_RS07690 PF00005 ABC transporter SH05_RS07700 PF10282 Lactonase, 7-bladed beta-propeller SH05_RS07705 PF03466 LysR substrate binding domain SH05_RS07705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS07710 PF04303 PrpF protein SH05_RS07715 PF00939 Sodium:sulfate symporter transmembrane region SH05_RS07720 PF00694 Aconitase C-terminal domain SH05_RS07720 PF00330 Aconitase family (aconitate hydratase) SH05_RS07725 PF01095 Pectinesterase SH05_RS07730 PF01161 Phosphatidylethanolamine-binding protein SH05_RS07735 PF00202 Aminotransferase class-III SH05_RS07740 PF04055 Radical SAM superfamily SH05_RS07740 PF06968 Biotin and Thiamin Synthesis associated domain SH05_RS07745 PF00155 Aminotransferase class I and II SH05_RS07750 PF08241 Methyltransferase domain SH05_RS07760 PF02151 UvrB/uvrC motif SH05_RS07760 PF17757 UvrB interaction domain SH05_RS07760 PF12344 Ultra-violet resistance protein B SH05_RS07760 PF00271 Helicase conserved C-terminal domain SH05_RS07760 PF04851 Type III restriction enzyme, res subunit SH05_RS07765 PF01933 Uncharacterised protein family UPF0052 SH05_RS07775 PF04055 Radical SAM superfamily SH05_RS07775 PF06463 Molybdenum Cofactor Synthesis C SH05_RS07780 PF00994 Probable molybdopterin binding domain SH05_RS07785 PF01967 MoaC family SH05_RS07790 PF02597 ThiS family SH05_RS07795 PF02391 MoaE protein SH05_RS07800 PF01027 Inhibitor of apoptosis-promoting Bax1 SH05_RS07805 PF01027 Inhibitor of apoptosis-promoting Bax1 SH05_RS07810 PF03706 Lysylphosphatidylglycerol synthase TM region SH05_RS07815 PF13091 PLD-like domain SH05_RS07820 PF03372 Endonuclease/Exonuclease/phosphatase family SH05_RS07825 PF11076 Putative inner membrane protein YbhQ SH05_RS07840 PF00005 ABC transporter SH05_RS07845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS07850 PF00440 Bacterial regulatory proteins, tetR family SH05_RS07850 PF09209 Tetracyclin repressor-like, C-terminal domain SH05_RS07855 PF00271 Helicase conserved C-terminal domain SH05_RS07855 PF00270 DEAD/DEAH box helicase SH05_RS07860 PF08719 Domain of unknown function (DUF1768) SH05_RS07865 PF06733 DEAD_2 SH05_RS07865 PF13307 Helicase C-terminal domain SH05_RS07865 PF00270 DEAD/DEAH box helicase SH05_RS07870 PF02885 Glycosyl transferase family, helical bundle domain SH05_RS07875 PF02615 Malate/L-lactate dehydrogenase SH05_RS07880 PF07338 Protein of unknown function (DUF1471) SH05_RS07885 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH05_RS07890 PF13640 2OG-Fe(II) oxygenase superfamily SH05_RS07890 PF18331 PKHD-type hydroxylase C-terminal domain SH05_RS07895 PF00593 TonB dependent receptor SH05_RS07895 PF07715 TonB-dependent Receptor Plug Domain SH05_RS07900 PF07338 Protein of unknown function (DUF1471) SH05_RS07905 PF05971 RNA methyltransferase SH05_RS07910 PF00924 Mechanosensitive ion channel SH05_RS07915 PF00005 ABC transporter SH05_RS07920 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS07925 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS07935 PF00210 Ferritin-like domain SH05_RS07940 PF00892 EamA-like transporter family SH05_RS07945 PF13505 Outer membrane protein beta-barrel domain SH05_RS07950 PF00884 Sulfatase SH05_RS07960 PF01325 Iron dependent repressor, N-terminal DNA binding domain SH05_RS07960 PF02742 Iron dependent repressor, metal binding and dimerisation domain SH05_RS07965 PF03600 Citrate transporter SH05_RS07970 PF03734 L,D-transpeptidase catalytic domain SH05_RS07970 PF17969 L,D-transpeptidase C-terminal domain SH05_RS07975 PF00005 ABC transporter SH05_RS07975 PF12848 ABC transporter SH05_RS07980 PF07350 Protein of unknown function (DUF1479) SH05_RS07990 PF02901 Pyruvate formate lyase-like SH05_RS07990 PF01228 Glycine radical SH05_RS07995 PF04055 Radical SAM superfamily SH05_RS08000 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH05_RS08005 PF00899 ThiF family SH05_RS08010 PF00994 Probable molybdopterin binding domain SH05_RS08010 PF03454 MoeA C-terminal region (domain IV) SH05_RS08010 PF03453 MoeA N-terminal region (domain I and II) SH05_RS08015 PF01112 Asparaginase SH05_RS08020 PF00005 ABC transporter SH05_RS08020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH05_RS08025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS08030 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS08035 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS08035 PF12911 N-terminal TM domain of oligopeptide transport permease C SH05_RS08045 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS08045 PF17156 Gammaproteobacterial periplasmic sensor domain SH05_RS08050 PF04055 Radical SAM superfamily SH05_RS08050 PF18693 TRAM domain SH05_RS08050 PF00919 Uncharacterized protein family UPF0004 SH05_RS08055 PF10799 Biofilm formation protein (YliH/bssR) SH05_RS08060 PF07995 Glucose / Sorbosone dehydrogenase SH05_RS08065 PF13417 Glutathione S-transferase, N-terminal domain SH05_RS08065 PF00043 Glutathione S-transferase, C-terminal domain SH05_RS08070 PF00768 D-alanyl-D-alanine carboxypeptidase SH05_RS08070 PF07943 Penicillin-binding protein 5, C-terminal domain SH05_RS08075 PF08220 DeoR-like helix-turn-helix domain SH05_RS08075 PF00455 DeoR C terminal sensor domain SH05_RS08080 PF01569 PAP2 superfamily SH05_RS08085 PF07690 Major Facilitator Superfamily SH05_RS08100 PF07690 Major Facilitator Superfamily SH05_RS08105 PF00440 Bacterial regulatory proteins, tetR family SH05_RS08110 PF02080 TrkA-C domain SH05_RS08110 PF06826 Predicted Permease Membrane Region SH05_RS08115 PF11045 Putative inner membrane protein of Enterobacteriaceae SH05_RS08120 PF00462 Glutaredoxin SH05_RS08125 PF07214 Protein of unknown function (DUF1418) SH05_RS08130 PF00881 Nitroreductase family SH05_RS08135 PF18030 RimK PreATP-grasp domain SH05_RS08135 PF08443 RimK-like ATP-grasp domain SH05_RS08140 PF10722 Putative bacterial sensory transduction regulator SH05_RS08150 PF13416 Bacterial extracellular solute-binding protein SH05_RS08155 PF00005 ABC transporter SH05_RS08155 PF08402 TOBE domain SH05_RS08160 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS08165 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS08170 PF10767 Protein of unknown function (DUF2593) SH05_RS08175 PF05958 tRNA (Uracil-5-)-methyltransferase SH05_RS08180 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS08185 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS08190 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS08195 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS08200 PF00005 ABC transporter SH05_RS08205 PF12883 Protein of unknown function (DUF3828) SH05_RS08210 PF01906 Putative heavy-metal-binding SH05_RS08215 PF01510 N-acetylmuramoyl-L-alanine amidase SH05_RS08220 PF01370 NAD dependent epimerase/dehydratase family SH05_RS08225 PF11066 Protein of unknown function (DUF2867) SH05_RS08225 PF13460 NAD(P)H-binding SH05_RS08230 PF01212 Beta-eliminating lyase SH05_RS08235 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH05_RS08235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH05_RS08235 PF00205 Thiamine pyrophosphate enzyme, central domain SH05_RS08240 PF00175 Oxidoreductase NAD-binding domain SH05_RS08240 PF00970 Oxidoreductase FAD-binding domain SH05_RS08240 PF00111 2Fe-2S iron-sulfur cluster binding domain SH05_RS08245 PF03063 Prismane/CO dehydrogenase family SH05_RS08250 PF03956 Lysine exporter LysO SH05_RS08255 PF00230 Major intrinsic protein SH05_RS08265 PF11398 Protein of unknown function (DUF2813) SH05_RS08270 PF04393 Protein of unknown function (DUF535) SH05_RS08275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS08280 PF00005 ABC transporter SH05_RS08280 PF02687 FtsX-like permease family SH05_RS08280 PF12704 MacB-like periplasmic core domain SH05_RS08285 PF00313 'Cold-shock' DNA-binding domain SH05_RS08290 PF02617 ATP-dependent Clp protease adaptor protein ClpS SH05_RS08295 PF07724 AAA domain (Cdc48 subfamily) SH05_RS08295 PF00004 ATPase family associated with various cellular activities (AAA) SH05_RS08295 PF10431 C-terminal, D2-small domain, of ClpB protein SH05_RS08295 PF02861 Clp amino terminal domain, pathogenicity island component SH05_RS08295 PF17871 AAA lid domain SH05_RS08305 PF01176 Translation initiation factor 1A / IF-1 SH05_RS08310 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SH05_RS08315 PF00005 ABC transporter SH05_RS08315 PF00664 ABC transporter transmembrane region SH05_RS08320 PF00664 ABC transporter transmembrane region SH05_RS08320 PF00005 ABC transporter SH05_RS08325 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS08330 PF01037 Lrp/AsnC ligand binding domain SH05_RS08335 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SH05_RS08335 PF01580 FtsK/SpoIIIE family SH05_RS08335 PF09397 Ftsk gamma domain SH05_RS08335 PF17854 FtsK alpha domain SH05_RS08340 PF03548 Outer membrane lipoprotein carrier protein LolA SH05_RS08345 PF00004 ATPase family associated with various cellular activities (AAA) SH05_RS08345 PF12002 MgsA AAA+ ATPase C terminal SH05_RS08345 PF16193 AAA C-terminal domain SH05_RS08350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH05_RS08350 PF02403 Seryl-tRNA synthetase N-terminal domain SH05_RS08355 PF01568 Molydopterin dinucleotide binding domain SH05_RS08355 PF00384 Molybdopterin oxidoreductase SH05_RS08355 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS08360 PF12800 4Fe-4S binding domain SH05_RS08360 PF13247 4Fe-4S dicluster domain SH05_RS08365 PF04976 DMSO reductase anchor subunit (DmsC) SH05_RS08370 PF00857 Isochorismatase family SH05_RS08375 PF07690 Major Facilitator Superfamily SH05_RS08380 PF13520 Amino acid permease SH05_RS08385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS08385 PF03466 LysR substrate binding domain SH05_RS08390 PF02525 Flavodoxin-like fold SH05_RS08395 PF04055 Radical SAM superfamily SH05_RS08410 PF18381 YcaO cyclodehydratase C-terminal domain SH05_RS08410 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SH05_RS08415 PF04239 Protein of unknown function (DUF421) SH05_RS08420 PF00266 Aminotransferase class-V SH05_RS08425 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH05_RS08430 PF01435 Peptidase family M48 SH05_RS08435 PF02224 Cytidylate kinase SH05_RS08440 PF00575 S1 RNA binding domain SH05_RS08445 PF00216 Bacterial DNA-binding protein SH05_RS08450 PF03772 Competence protein SH05_RS08450 PF00753 Metallo-beta-lactamase superfamily SH05_RS08455 PF00005 ABC transporter SH05_RS08455 PF00664 ABC transporter transmembrane region SH05_RS08460 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SH05_RS08465 PF06224 Winged helix DNA-binding domain SH05_RS08470 PF03966 Trm112p-like protein SH05_RS08475 PF02348 Cytidylyltransferase SH05_RS08480 PF01636 Phosphotransferase enzyme family SH05_RS08485 PF02698 DUF218 domain SH05_RS08490 PF13847 Methyltransferase domain SH05_RS08495 PF17193 MukF C-terminal domain SH05_RS08495 PF17192 MukF middle domain SH05_RS08495 PF03882 MukF winged-helix domain SH05_RS08500 PF04288 MukE-like family SH05_RS08505 PF16330 MukB hinge domain SH05_RS08505 PF04310 MukB N-terminal SH05_RS08510 PF01471 Putative peptidoglycan binding domain SH05_RS08510 PF03734 L,D-transpeptidase catalytic domain SH05_RS08515 PF05951 Bacterial protein of unknown function (DUF882) SH05_RS08520 PF00753 Metallo-beta-lactamase superfamily SH05_RS08525 PF00155 Aminotransferase class I and II SH05_RS08535 PF00267 Gram-negative porin SH05_RS08540 PF00152 tRNA synthetases class II (D, K and N) SH05_RS08540 PF01336 OB-fold nucleic acid binding domain SH05_RS08545 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SH05_RS08545 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SH05_RS08550 PF11940 Domain of unknown function (DUF3458) Ig-like fold SH05_RS08550 PF01433 Peptidase family M1 domain SH05_RS08550 PF17432 Domain of unknown function (DUF3458_C) ARM repeats SH05_RS08555 PF00005 ABC transporter SH05_RS08560 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS08565 PF00296 Luciferase-like monooxygenase SH05_RS08570 PF09084 NMT1/THI5 like SH05_RS08575 PF03358 NADPH-dependent FMN reductase SH05_RS08580 PF00419 Fimbrial protein SH05_RS08585 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS08585 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS08590 PF00577 Outer membrane usher protein SH05_RS08590 PF13953 PapC C-terminal domain SH05_RS08590 PF13954 PapC N-terminal domain SH05_RS08595 PF00419 Fimbrial protein SH05_RS08600 PF00419 Fimbrial protein SH05_RS08605 PF00419 Fimbrial protein SH05_RS08610 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS08610 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS08615 PF01180 Dihydroorotate dehydrogenase SH05_RS08620 PF07126 Cell-division protein ZapC SH05_RS08625 PF03476 MOSC N-terminal beta barrel domain SH05_RS08625 PF00111 2Fe-2S iron-sulfur cluster binding domain SH05_RS08625 PF03473 MOSC domain SH05_RS08630 PF10672 S-adenosylmethionine-dependent methyltransferase SH05_RS08630 PF02926 THUMP domain SH05_RS08630 PF01170 Putative RNA methylase family UPF0020 SH05_RS08635 PF00005 ABC transporter SH05_RS08635 PF16326 ABC transporter C-terminal domain SH05_RS08635 PF12848 ABC transporter SH05_RS08640 PF04403 Paraquat-inducible protein A SH05_RS08645 PF02470 MlaD protein SH05_RS08650 PF03886 ABC-type transport auxiliary lipoprotein component SH05_RS08655 PF04957 Ribosome modulation factor SH05_RS08660 PF07977 FabA-like domain SH05_RS08665 PF05362 Lon protease (S16) C-terminal proteolytic domain SH05_RS08665 PF13654 AAA domain SH05_RS08670 PF17414 MatP C-terminal ribbon-helix-helix domain SH05_RS08670 PF06303 MatP N-terminal domain SH05_RS08675 PF01389 OmpA-like transmembrane domain SH05_RS08675 PF00691 OmpA family SH05_RS08685 PF03846 Cell division inhibitor SulA SH05_RS08690 PF04993 TfoX N-terminal domain SH05_RS08690 PF04994 TfoX C-terminal domain SH05_RS08695 PF12805 FUSC-like inner membrane protein yccS SH05_RS08700 PF03733 Inner membrane component domain SH05_RS08705 PF00580 UvrD/REP helicase N-terminal domain SH05_RS08705 PF12462 DNA helicase IV / RNA helicase N terminal SH05_RS08705 PF13361 UvrD-like helicase C-terminal domain SH05_RS08710 PF02142 MGS-like domain SH05_RS08715 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) SH05_RS08725 PF13380 CoA binding domain SH05_RS08730 PF08755 Hemimethylated DNA-binding protein YccV like SH05_RS08735 PF17785 PUA-like domain SH05_RS08735 PF10672 S-adenosylmethionine-dependent methyltransferase SH05_RS08740 PF00708 Acylphosphatase SH05_RS08745 PF04358 DsrC like protein SH05_RS08750 PF01027 Inhibitor of apoptosis-promoting Bax1 SH05_RS08760 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH05_RS08760 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH05_RS08765 PF00374 Nickel-dependent hydrogenase SH05_RS08770 PF01292 Prokaryotic cytochrome b561 SH05_RS08775 PF01750 Hydrogenase maturation protease SH05_RS08780 PF07449 Hydrogenase-1 expression protein HyaE SH05_RS08785 PF04809 HupH hydrogenase expression protein, C-terminal conserved region SH05_RS08790 PF01654 Cytochrome bd terminal oxidase subunit I SH05_RS08795 PF02322 Cytochrome bd terminal oxidase subunit II SH05_RS08800 PF08173 Membrane bound YbgT-like protein SH05_RS08805 PF00328 Histidine phosphatase superfamily (branch 2) SH05_RS08810 PF13614 AAA domain SH05_RS08810 PF02706 Chain length determinant protein SH05_RS08810 PF13807 G-rich domain on putative tyrosine kinase SH05_RS08815 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH05_RS08820 PF02563 Polysaccharide biosynthesis/export protein SH05_RS08820 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH05_RS08820 PF10531 SLBB domain SH05_RS08825 PF06082 Exopolysaccharide biosynthesis protein YbjH SH05_RS08830 PF06251 Capsule biosynthesis GfcC SH05_RS08835 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH05_RS08850 PF03400 IS1 transposase SH05_RS08855 PF00313 'Cold-shock' DNA-binding domain SH05_RS08860 PF00313 'Cold-shock' DNA-binding domain SH05_RS08865 PF15939 Putative antitoxin of bacterial toxin-antitoxin system SH05_RS08870 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH05_RS08875 PF12801 4Fe-4S binding domain SH05_RS08880 PF00672 HAMP domain SH05_RS08880 PF00072 Response regulator receiver domain SH05_RS08880 PF01627 Hpt domain SH05_RS08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS08880 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS08885 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH05_RS08890 PF00072 Response regulator receiver domain SH05_RS08890 PF00486 Transcriptional regulatory protein, C terminal SH05_RS08895 PF03264 NapC/NirT cytochrome c family, N-terminal region SH05_RS08900 PF18364 Molybdopterin oxidoreductase N-terminal domain SH05_RS08900 PF01568 Molydopterin dinucleotide binding domain SH05_RS08900 PF00384 Molybdopterin oxidoreductase SH05_RS08905 PF02613 Nitrate reductase delta subunit SH05_RS08915 PF00226 DnaJ domain SH05_RS08915 PF01556 DnaJ C terminal domain SH05_RS08925 PF00328 Histidine phosphatase superfamily (branch 2) SH05_RS08930 PF13993 YccJ-like protein SH05_RS08935 PF03358 NADPH-dependent FMN reductase SH05_RS08945 PF10685 Stress-induced bacterial acidophilic repeat motif SH05_RS08950 PF00860 Permease family SH05_RS08955 PF01613 Flavin reductase like domain SH05_RS08960 PF00881 Nitroreductase family SH05_RS08965 PF12697 Alpha/beta hydrolase family SH05_RS08970 PF01042 Endoribonuclease L-PSP SH05_RS08975 PF00857 Isochorismatase family SH05_RS08980 PF00296 Luciferase-like monooxygenase SH05_RS08985 PF08362 YcdC-like protein, C-terminal region SH05_RS08985 PF00440 Bacterial regulatory proteins, tetR family SH05_RS08990 PF14850 DNA-binding domain of Proline dehydrogenase SH05_RS08990 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SH05_RS08990 PF01619 Proline dehydrogenase SH05_RS08990 PF00171 Aldehyde dehydrogenase family SH05_RS09000 PF00474 Sodium:solute symporter family SH05_RS09010 PF03239 Iron permease FTR1 family SH05_RS09015 PF09375 Imelysin SH05_RS09015 PF13473 Cupredoxin-like domain SH05_RS09020 PF04261 Dyp-type peroxidase family SH05_RS09030 PF02562 PhoH-like protein SH05_RS09035 PF13994 PgaD-like protein SH05_RS09040 PF00535 Glycosyl transferase family 2 SH05_RS09045 PF01522 Polysaccharide deacetylase SH05_RS09045 PF14883 Hypothetical glycosyl hydrolase family 13 SH05_RS09055 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS09055 PF17158 Membrane-associated sensor, integral membrane domain SH05_RS09060 PF13276 HTH-like domain SH05_RS09060 PF00665 Integrase core domain SH05_RS09060 PF13333 Integrase core domain SH05_RS09065 PF01527 Transposase SH05_RS09090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH05_RS09095 PF02811 PHP domain SH05_RS09100 PF02613 Nitrate reductase delta subunit SH05_RS09105 PF06496 Protein of unknown function (DUF1097) SH05_RS09110 PF03783 Curli production assembly/transport component CsgG SH05_RS09115 PF10614 Type VIII secretion system (T8SS), CsgF protein SH05_RS09120 PF10627 Curli assembly protein CsgE SH05_RS09125 PF00196 Bacterial regulatory proteins, luxR family SH05_RS09135 PF07012 Curlin associated repeat SH05_RS09140 PF07012 Curlin associated repeat SH05_RS09145 PF10610 Thin aggregative fimbriae synthesis protein SH05_RS09155 PF01661 Macro domain SH05_RS09160 PF13091 PLD-like domain SH05_RS09165 PF01757 Acyltransferase family SH05_RS09180 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH05_RS09185 PF00535 Glycosyl transferase family 2 SH05_RS09190 PF07119 Protein of unknown function (DUF1375) SH05_RS09195 PF13984 MsyB protein SH05_RS09205 PF07690 Major Facilitator Superfamily SH05_RS09210 PF03279 Bacterial lipid A biosynthesis acyltransferase SH05_RS09215 PF17773 UPF0176 acylphosphatase like domain SH05_RS09215 PF00581 Rhodanese-like domain SH05_RS09215 PF12368 Rhodanase C-terminal SH05_RS09220 PF04264 YceI-like domain SH05_RS09225 PF01292 Prokaryotic cytochrome b561 SH05_RS09230 PF10968 Protein of unknown function (DUF2770) SH05_RS09235 PF01266 FAD dependent oxidoreductase SH05_RS09240 PF13991 BssS protein family SH05_RS09245 PF06183 DinI-like family SH05_RS09250 PF01979 Amidohydrolase family SH05_RS09255 PF07273 Protein of unknown function (DUF1439) SH05_RS09260 PF04399 Glutaredoxin 2, C terminal domain SH05_RS09260 PF13417 Glutathione S-transferase, N-terminal domain SH05_RS09265 PF07690 Major Facilitator Superfamily SH05_RS09270 PF13302 Acetyltransferase (GNAT) domain SH05_RS09275 PF04337 Protein of unknown function, DUF480 SH05_RS09280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH05_RS09285 PF03023 Lipid II flippase MurJ SH05_RS09290 PF05130 FlgN protein SH05_RS09295 PF04316 Anti-sigma-28 factor, FlgM SH05_RS09300 PF13144 Chaperone for flagella basal body P-ring formation SH05_RS09305 PF00460 Flagella basal body rod protein SH05_RS09310 PF00460 Flagella basal body rod protein SH05_RS09310 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH05_RS09315 PF13861 FlgD Tudor-like domain SH05_RS09315 PF13860 FlgD Ig-like domain SH05_RS09315 PF03963 Flagellar hook capping protein - N-terminal region SH05_RS09320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH05_RS09320 PF07559 Flagellar basal body protein FlaE SH05_RS09320 PF00460 Flagella basal body rod protein SH05_RS09325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH05_RS09325 PF00460 Flagella basal body rod protein SH05_RS09330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH05_RS09330 PF00460 Flagella basal body rod protein SH05_RS09335 PF02107 Flagellar L-ring protein SH05_RS09340 PF02119 Flagellar P-ring protein SH05_RS09345 PF10135 Rod binding protein SH05_RS09345 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH05_RS09350 PF00460 Flagella basal body rod protein SH05_RS09350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH05_RS09355 PF00669 Bacterial flagellin N-terminal helical region SH05_RS09360 PF10150 Ribonuclease E/G family SH05_RS09360 PF12111 Polyribonucleotide phosphorylase C terminal SH05_RS09360 PF00575 S1 RNA binding domain SH05_RS09370 PF01479 S4 domain SH05_RS09370 PF00849 RNA pseudouridylate synthase SH05_RS09375 PF02545 Maf-like protein SH05_RS09380 PF02620 Large ribosomal RNA subunit accumulation protein YceD SH05_RS09385 PF01783 Ribosomal L32p protein family SH05_RS09390 PF02504 Fatty acid synthesis protein SH05_RS09395 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SH05_RS09395 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SH05_RS09400 PF00698 Acyl transferase domain SH05_RS09410 PF00550 Phosphopantetheine attachment site SH05_RS09415 PF02801 Beta-ketoacyl synthase, C-terminal domain SH05_RS09415 PF00109 Beta-ketoacyl synthase, N-terminal domain SH05_RS09420 PF01063 Amino-transferase class IV SH05_RS09425 PF02618 YceG-like family SH05_RS09430 PF02223 Thymidylate kinase SH05_RS09435 PF09115 DNA polymerase III, delta subunit, C terminal SH05_RS09440 PF01026 TatD related DNase SH05_RS09445 PF00367 phosphotransferase system, EIIB SH05_RS09445 PF02378 Phosphotransferase system, EIIC SH05_RS09450 PF07715 TonB-dependent Receptor Plug Domain SH05_RS09450 PF00593 TonB dependent receptor SH05_RS09455 PF01230 HIT domain SH05_RS09460 PF07233 Protein of unknown function (DUF1425) SH05_RS09465 PF13036 Peptidoglycan-synthase activator LpoB SH05_RS09470 PF01636 Phosphotransferase enzyme family SH05_RS09475 PF00933 Glycosyl hydrolase family 3 N terminal domain SH05_RS09480 PF05728 Uncharacterised protein family (UPF0227) SH05_RS09485 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS09490 PF05433 Glycine zipper 2TM domain SH05_RS09495 PF00440 Bacterial regulatory proteins, tetR family SH05_RS09500 PF07338 Protein of unknown function (DUF1471) SH05_RS09505 PF17969 L,D-transpeptidase C-terminal domain SH05_RS09505 PF01476 LysM domain SH05_RS09505 PF03734 L,D-transpeptidase catalytic domain SH05_RS09510 PF00270 DEAD/DEAH box helicase SH05_RS09510 PF17757 UvrB interaction domain SH05_RS09510 PF03461 TRCF domain SH05_RS09510 PF00271 Helicase conserved C-terminal domain SH05_RS09510 PF02559 CarD-like/TRCF domain SH05_RS09515 PF01757 Acyltransferase family SH05_RS09520 PF12704 MacB-like periplasmic core domain SH05_RS09520 PF02687 FtsX-like permease family SH05_RS09525 PF00005 ABC transporter SH05_RS09530 PF12704 MacB-like periplasmic core domain SH05_RS09530 PF02687 FtsX-like permease family SH05_RS09535 PF00480 ROK family SH05_RS09540 PF02146 Sir2 family SH05_RS09545 PF04536 TPM domain SH05_RS09550 PF12158 Protein of unknown function (DUF3592) SH05_RS09555 PF13416 Bacterial extracellular solute-binding protein SH05_RS09560 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS09565 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS09570 PF00005 ABC transporter SH05_RS09570 PF08402 TOBE domain SH05_RS09580 PF01546 Peptidase family M20/M25/M40 SH05_RS09580 PF07687 Peptidase dimerisation domain SH05_RS09585 PF08007 Cupin superfamily protein SH05_RS09590 PF08918 PhoQ Sensor SH05_RS09590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS09595 PF00072 Response regulator receiver domain SH05_RS09595 PF00486 Transcriptional regulatory protein, C terminal SH05_RS09600 PF08328 Adenylosuccinate lyase C-terminal SH05_RS09600 PF00206 Lyase SH05_RS09605 PF04356 Protein of unknown function (DUF489) SH05_RS09615 PF00293 NUDIX domain SH05_RS09620 PF00849 RNA pseudouridylate synthase SH05_RS09625 PF00180 Isocitrate/isopropylmalate dehydrogenase SH05_RS09630 PF08242 Methyltransferase domain SH05_RS09640 PF10463 Peptidase U49 SH05_RS09645 PF00589 Phage integrase family SH05_RS09645 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain SH05_RS09650 PF07825 Excisionase-like protein SH05_RS09660 PF00717 Peptidase S24-like SH05_RS09665 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SH05_RS09680 PF03354 Phage Terminase SH05_RS09690 PF04860 Phage portal protein SH05_RS09695 PF04865 Baseplate J-like protein SH05_RS09700 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) SH05_RS09705 PF07484 Phage Tail Collar Domain SH05_RS09710 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH05_RS09715 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH05_RS09725 PF02796 Helix-turn-helix domain of resolvase SH05_RS09725 PF00239 Resolvase, N terminal domain SH05_RS09730 PF01844 HNH endonuclease SH05_RS09745 PF07166 Protein of unknown function (DUF1398) SH05_RS09750 PF13411 MerR HTH family regulatory protein SH05_RS09755 PF04940 Sensors of blue-light using FAD SH05_RS09755 PF00563 EAL domain SH05_RS09760 PF10798 Biofilm development protein YmgB/AriR SH05_RS09770 PF10798 Biofilm development protein YmgB/AriR SH05_RS09780 PF12792 CSS motif domain associated with EAL SH05_RS09780 PF00563 EAL domain SH05_RS09805 PF16456 YmgD protein SH05_RS09810 PF13436 Glycine-zipper domain SH05_RS09825 PF03776 Septum formation topological specificity factor MinE SH05_RS09830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SH05_RS09835 PF03775 Septum formation inhibitor MinC, C-terminal domain SH05_RS09835 PF05209 Septum formation inhibitor MinC, N-terminal domain SH05_RS09840 PF05666 Fels-1 Prophage Protein-like SH05_RS09845 PF04151 Bacterial pre-peptidase C-terminal domain SH05_RS09855 PF05166 YcgL domain SH05_RS09860 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH05_RS09865 PF03692 Putative zinc- or iron-chelating domain SH05_RS09870 PF06109 Haemolysin E (HlyE) SH05_RS09875 PF00717 Peptidase S24-like SH05_RS09880 PF13438 Domain of unknown function (DUF4113) SH05_RS09880 PF11799 impB/mucB/samB family C-terminal domain SH05_RS09880 PF00817 impB/mucB/samB family SH05_RS09880 PF11798 IMS family HHH motif SH05_RS09885 PF02600 Disulfide bond formation protein DsbB SH05_RS09890 PF06450 Bacterial Na+/H+ antiporter B (NhaB) SH05_RS09895 PF07840 FadR C-terminal domain SH05_RS09895 PF00392 Bacterial regulatory proteins, gntR family SH05_RS09900 PF04293 SpoVR like protein SH05_RS09905 PF01266 FAD dependent oxidoreductase SH05_RS09910 PF00842 Alanine racemase, C-terminal domain SH05_RS09910 PF01168 Alanine racemase, N-terminal domain SH05_RS09915 PF03471 Transporter associated domain SH05_RS09915 PF00999 Sodium/hydrogen exchanger family SH05_RS09915 PF02080 TrkA-C domain SH05_RS09920 PF02016 LD-carboxypeptidase N-terminal domain SH05_RS09920 PF17676 LD-carboxypeptidase C-terminal domain SH05_RS09925 PF01464 Transglycosylase SLT domain SH05_RS09930 PF07317 Flagellar regulator YcgR SH05_RS09930 PF07238 PilZ domain SH05_RS09935 PF04226 Transglycosylase associated protein SH05_RS09945 PF01204 Trehalase SH05_RS09950 PF05524 PEP-utilising enzyme, N-terminal SH05_RS09950 PF00391 PEP-utilising enzyme, mobile domain SH05_RS09950 PF00381 PTS HPr component phosphorylation site SH05_RS09950 PF03610 PTS system fructose IIA component SH05_RS09955 PF02734 DAK2 domain SH05_RS09960 PF02733 Dak1 domain SH05_RS09965 PF00158 Sigma-54 interaction domain SH05_RS09965 PF00989 PAS fold SH05_RS09965 PF02954 Bacterial regulatory protein, Fis family SH05_RS09970 PF03212 Pertactin SH05_RS09970 PF03797 Autotransporter beta-domain SH05_RS09980 PF01926 50S ribosome-binding GTPase SH05_RS09980 PF06071 Protein of unknown function (DUF933) SH05_RS09985 PF01195 Peptidyl-tRNA hydrolase SH05_RS09990 PF10762 Protein of unknown function (DUF2583) SH05_RS09995 PF00916 Sulfate permease family SH05_RS09995 PF01740 STAS domain SH05_RS10000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SH05_RS10000 PF14572 Phosphoribosyl synthetase-associated domain SH05_RS10005 PF08544 GHMP kinases C terminal SH05_RS10005 PF00288 GHMP kinases N terminal domain SH05_RS10010 PF03550 Outer membrane lipoprotein LolB SH05_RS10015 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SH05_RS10015 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SH05_RS10015 PF01488 Shikimate / quinate 5-dehydrogenase SH05_RS10020 PF03462 PCRF domain SH05_RS10020 PF00472 RF-1 domain SH05_RS10025 PF13847 Methyltransferase domain SH05_RS10025 PF17827 PrmC N-terminal domain SH05_RS10030 PF04247 Invasion gene expression up-regulator, SirB SH05_RS10035 PF13369 Transglutaminase-like superfamily SH05_RS10040 PF00793 DAHP synthetase I family SH05_RS10045 PF13940 Toxin Ldr, type I toxin-antitoxin system SH05_RS10050 PF13940 Toxin Ldr, type I toxin-antitoxin system SH05_RS10055 PF13940 Toxin Ldr, type I toxin-antitoxin system SH05_RS10060 PF01699 Sodium/calcium exchanger protein SH05_RS10065 PF06150 ChaB SH05_RS10070 PF04752 ChaC-like protein SH05_RS10075 PF02635 DsrE/DsrF-like family SH05_RS10080 PF11924 Inverse autotransporter, beta-domain SH05_RS10085 PF00196 Bacterial regulatory proteins, luxR family SH05_RS10085 PF00072 Response regulator receiver domain SH05_RS10090 PF07730 Histidine kinase SH05_RS10090 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH05_RS10090 PF00672 HAMP domain SH05_RS10090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS10100 PF07690 Major Facilitator Superfamily SH05_RS10105 PF14710 Respiratory nitrate reductase alpha N-terminal SH05_RS10105 PF01568 Molydopterin dinucleotide binding domain SH05_RS10105 PF00384 Molybdopterin oxidoreductase SH05_RS10110 PF13247 4Fe-4S dicluster domain SH05_RS10110 PF14711 Respiratory nitrate reductase beta C-terminal SH05_RS10115 PF02613 Nitrate reductase delta subunit SH05_RS10120 PF02665 Nitrate reductase gamma subunit SH05_RS10140 PF00551 Formyl transferase SH05_RS10140 PF01842 ACT domain SH05_RS10145 PF02810 SEC-C motif SH05_RS10150 PF01734 Patatin-like phospholipase SH05_RS10160 PF00483 Nucleotidyl transferase SH05_RS10165 PF00816 H-NS histone family SH05_RS10170 PF00265 Thymidine kinase SH05_RS10175 PF13006 Insertion element 4 transposase N-terminal SH05_RS10175 PF01609 Transposase DDE domain SH05_RS10180 PF01609 Transposase DDE domain SH05_RS10180 PF13006 Insertion element 4 transposase N-terminal SH05_RS10185 PF00465 Iron-containing alcohol dehydrogenase SH05_RS10185 PF00171 Aldehyde dehydrogenase family SH05_RS10190 PF01914 MarC family integral membrane protein SH05_RS10195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS10200 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS10205 PF12911 N-terminal TM domain of oligopeptide transport permease C SH05_RS10205 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS10210 PF00005 ABC transporter SH05_RS10210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH05_RS10215 PF00005 ABC transporter SH05_RS10215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH05_RS10220 PF04269 Protein of unknown function, DUF440 SH05_RS10225 PF13396 Phospholipase_D-nuclease N-terminal SH05_RS10225 PF13091 PLD-like domain SH05_RS10235 PF07885 Ion channel SH05_RS10235 PF02254 TrkA-N domain SH05_RS10240 PF03795 YCII-related domain SH05_RS10245 PF03544 Gram-negative bacterial TonB protein C-terminal SH05_RS10250 PF03061 Thioesterase superfamily SH05_RS10255 PF04279 Intracellular septation protein A SH05_RS10265 PF03922 OmpW family SH05_RS10270 PF05974 Domain of unknown function (DUF892) SH05_RS10275 PF05974 Domain of unknown function (DUF892) SH05_RS10280 PF10685 Stress-induced bacterial acidophilic repeat motif SH05_RS10285 PF00290 Tryptophan synthase alpha chain SH05_RS10290 PF00291 Pyridoxal-phosphate dependent enzyme SH05_RS10295 PF00218 Indole-3-glycerol phosphate synthase SH05_RS10295 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SH05_RS10300 PF00117 Glutamine amidotransferase class-I SH05_RS10300 PF00591 Glycosyl transferase family, a/b domain SH05_RS10300 PF02885 Glycosyl transferase family, helical bundle domain SH05_RS10305 PF04715 Anthranilate synthase component I, N terminal region SH05_RS10305 PF00425 chorismate binding enzyme SH05_RS10310 PF02811 PHP domain SH05_RS10315 PF01300 Telomere recombination SH05_RS10320 PF09972 Predicted membrane protein (DUF2207) SH05_RS10325 PF00849 RNA pseudouridylate synthase SH05_RS10325 PF01479 S4 domain SH05_RS10330 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SH05_RS10330 PF12557 Cob(I)alamin adenosyltransferase N terminal SH05_RS10335 PF00106 short chain dehydrogenase SH05_RS10345 PF08496 Peptidase family S49 N-terminal SH05_RS10345 PF01343 Peptidase family S49 SH05_RS10350 PF10692 Protein of unknown function (DUF2498) SH05_RS10360 PF08272 Topoisomerase I zinc-ribbon-like SH05_RS10360 PF01751 Toprim domain SH05_RS10360 PF01131 DNA topoisomerase SH05_RS10360 PF01396 Topoisomerase DNA binding C4 zinc finger SH05_RS10365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS10365 PF03466 LysR substrate binding domain SH05_RS10385 PF00330 Aconitase family (aconitate hydratase) SH05_RS10385 PF00694 Aconitase C-terminal domain SH05_RS10390 PF00925 GTP cyclohydrolase II SH05_RS10395 PF01569 PAP2 superfamily SH05_RS10400 PF06305 Lipopolysaccharide assembly protein A domain SH05_RS10405 PF18073 Rubredoxin metal binding domain SH05_RS10410 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH05_RS10415 PF01253 Translation initiation factor SUI1 SH05_RS10420 PF05433 Glycine zipper 2TM domain SH05_RS10425 PF00455 DeoR C terminal sensor domain SH05_RS10425 PF08220 DeoR-like helix-turn-helix domain SH05_RS10435 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS10435 PF00563 EAL domain SH05_RS10435 PF13426 PAS domain SH05_RS10445 PF00773 RNB domain SH05_RS10445 PF00575 S1 RNA binding domain SH05_RS10445 PF17876 Cold shock domain SH05_RS10445 PF08206 Ribonuclease B OB domain SH05_RS10460 PF04480 Protein of unknown function (DUF559) SH05_RS10465 PF00005 ABC transporter SH05_RS10470 PF00005 ABC transporter SH05_RS10470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH05_RS10475 PF12911 N-terminal TM domain of oligopeptide transport permease C SH05_RS10475 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS10480 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS10485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS10495 PF10820 Protein of unknown function (DUF2543) SH05_RS10500 PF00324 Amino acid permease SH05_RS10505 PF00120 Glutamine synthetase, catalytic domain SH05_RS10510 PF07722 Peptidase C26 SH05_RS10515 PF07883 Cupin domain SH05_RS10515 PF01381 Helix-turn-helix SH05_RS10520 PF00171 Aldehyde dehydrogenase family SH05_RS10525 PF01266 FAD dependent oxidoreductase SH05_RS10530 PF00202 Aminotransferase class-III SH05_RS10535 PF02954 Bacterial regulatory protein, Fis family SH05_RS10535 PF00158 Sigma-54 interaction domain SH05_RS10540 PF04012 PspA/IM30 family SH05_RS10545 PF06667 Phage shock protein B SH05_RS10550 PF04024 PspC domain SH05_RS10555 PF09584 Phage shock protein PspD (Phageshock_PspD) SH05_RS10560 PF00581 Rhodanese-like domain SH05_RS10565 PF00128 Alpha amylase, catalytic domain SH05_RS10570 PF01547 Bacterial extracellular solute-binding protein SH05_RS10575 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS10580 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS10585 PF00107 Zinc-binding dehydrogenase SH05_RS10590 PF01261 Xylose isomerase-like TIM barrel SH05_RS10595 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH05_RS10595 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH05_RS10600 PF03636 Glycosyl hydrolase family 65, N-terminal domain SH05_RS10600 PF03632 Glycosyl hydrolase family 65 central catalytic domain SH05_RS10600 PF03633 Glycosyl hydrolase family 65, C-terminal domain SH05_RS10605 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS10615 PF09381 Outer membrane protein G (OmpG) SH05_RS10620 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH05_RS10620 PF00356 Bacterial regulatory proteins, lacI family SH05_RS10625 PF04317 YcjX-like family, DUF463 SH05_RS10630 PF05128 Domain of unknown function (DUF697) SH05_RS10635 PF18024 Helix-turn-helix domain SH05_RS10635 PF00158 Sigma-54 interaction domain SH05_RS10635 PF13188 PAS domain SH05_RS10640 PF08534 Redoxin SH05_RS10645 PF13378 Enolase C-terminal domain-like SH05_RS10645 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH05_RS10650 PF00246 Zinc carboxypeptidase SH05_RS10660 PF12146 Serine aminopeptidase, S33 SH05_RS10665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS10665 PF03466 LysR substrate binding domain SH05_RS10675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS10680 PF00924 Mechanosensitive ion channel SH05_RS10685 PF05598 Transposase domain (DUF772) SH05_RS10685 PF01609 Transposase DDE domain SH05_RS10690 PF10749 Protein of unknown function (DUF2534) SH05_RS10695 PF00582 Universal stress protein family SH05_RS10700 PF00325 Bacterial regulatory proteins, crp family SH05_RS10700 PF00027 Cyclic nucleotide-binding domain SH05_RS10705 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH05_RS10705 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH05_RS10710 PF03806 AbgT putative transporter family SH05_RS10720 PF01546 Peptidase family M20/M25/M40 SH05_RS10725 PF01546 Peptidase family M20/M25/M40 SH05_RS10725 PF07687 Peptidase dimerisation domain SH05_RS10730 PF03466 LysR substrate binding domain SH05_RS10730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS10740 PF01713 Smr domain SH05_RS10745 PF08448 PAS fold SH05_RS10745 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS10750 PF01544 CorA-like Mg2+ transporter protein SH05_RS10760 PF00270 DEAD/DEAH box helicase SH05_RS10760 PF03880 DbpA RNA binding domain SH05_RS10760 PF00271 Helicase conserved C-terminal domain SH05_RS10765 PF01171 PP-loop family SH05_RS10775 PF06806 Putative excisionase (DUF1233) SH05_RS10780 PF06688 Protein of unknown function (DUF1187) SH05_RS10790 PF03837 RecT family SH05_RS10795 PF12684 PDDEXK-like domain of unknown function (DUF3799) SH05_RS10795 PF06630 Enterobacterial exodeoxyribonuclease VIII SH05_RS10805 PF04181 Rtr1/RPAP2 family SH05_RS10815 PF14163 Super-infection exclusion protein B SH05_RS10825 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SH05_RS10830 PF06254 Putative bacterial toxin ydaT SH05_RS10835 PF07120 Protein of unknown function (DUF1376) SH05_RS10840 PF01695 IstB-like ATP binding protein SH05_RS10845 PF07789 Protein of unknown function (DUF1627) SH05_RS10850 PF03245 Bacteriophage Rz lysis protein SH05_RS10855 PF02386 Cation transport protein SH05_RS10860 PF02195 ParB-like nuclease domain SH05_RS10875 PF06791 Prophage tail length tape measure protein SH05_RS10880 PF06316 Enterobacterial Ail/Lom protein SH05_RS10885 PF05598 Transposase domain (DUF772) SH05_RS10885 PF01609 Transposase DDE domain SH05_RS10910 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH05_RS10915 PF02796 Helix-turn-helix domain of resolvase SH05_RS10915 PF00239 Resolvase, N terminal domain SH05_RS10925 PF00582 Universal stress protein family SH05_RS10930 PF00267 Gram-negative porin SH05_RS10935 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SH05_RS10935 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SH05_RS10935 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH05_RS10935 PF10371 Domain of unknown function SH05_RS10935 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SH05_RS10940 PF03891 Domain of unknown function (DUF333) SH05_RS10945 PF03724 META domain SH05_RS10950 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH05_RS10950 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH05_RS10955 PF11739 Dicarboxylate transport SH05_RS10960 PF13617 YnbE-like lipoprotein SH05_RS10965 PF07027 Protein of unknown function (DUF1318) SH05_RS10970 PF12833 Helix-turn-helix domain SH05_RS10970 PF14525 AraC-binding-like domain SH05_RS10975 PF00171 Aldehyde dehydrogenase family SH05_RS10980 PF07833 Copper amine oxidase N-terminal domain SH05_RS10980 PF02728 Copper amine oxidase, N3 domain SH05_RS10980 PF01179 Copper amine oxidase, enzyme domain SH05_RS10980 PF02727 Copper amine oxidase, N2 domain SH05_RS10985 PF01575 MaoC like domain SH05_RS10985 PF00171 Aldehyde dehydrogenase family SH05_RS10990 PF05138 Phenylacetic acid catabolic protein SH05_RS10995 PF06243 Phenylacetic acid degradation B SH05_RS11000 PF05138 Phenylacetic acid catabolic protein SH05_RS11005 PF01883 Iron-sulfur cluster assembly protein SH05_RS11010 PF00970 Oxidoreductase FAD-binding domain SH05_RS11010 PF00175 Oxidoreductase NAD-binding domain SH05_RS11010 PF00111 2Fe-2S iron-sulfur cluster binding domain SH05_RS11015 PF00378 Enoyl-CoA hydratase/isomerase SH05_RS11020 PF00378 Enoyl-CoA hydratase/isomerase SH05_RS11025 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain SH05_RS11025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH05_RS11025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH05_RS11030 PF03061 Thioesterase superfamily SH05_RS11035 PF00108 Thiolase, N-terminal domain SH05_RS11035 PF02803 Thiolase, C-terminal domain SH05_RS11040 PF00501 AMP-binding enzyme SH05_RS11040 PF14535 AMP-binding enzyme C-terminal domain SH05_RS11045 PF07848 PaaX-like protein SH05_RS11045 PF08223 PaaX-like protein C-terminal domain SH05_RS11050 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS11060 PF00665 Integrase core domain SH05_RS11060 PF13276 HTH-like domain SH05_RS11065 PF01527 Transposase SH05_RS11070 PF00665 Integrase core domain SH05_RS11070 PF13936 Helix-turn-helix domain SH05_RS11080 PF00248 Aldo/keto reductase family SH05_RS11085 PF10971 Protein of unknown function (DUF2773) SH05_RS11090 PF01066 CDP-alcohol phosphatidyltransferase SH05_RS11100 PF12147 Putative methyltransferase SH05_RS11100 PF12146 Serine aminopeptidase, S33 SH05_RS11105 PF00782 Dual specificity phosphatase, catalytic domain SH05_RS11110 PF02525 Flavodoxin-like fold SH05_RS11115 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SH05_RS11115 PF00271 Helicase conserved C-terminal domain SH05_RS11115 PF04408 Helicase associated domain (HA2) SH05_RS11115 PF00270 DEAD/DEAH box helicase SH05_RS11115 PF11898 Domain of unknown function (DUF3418) SH05_RS11120 PF02698 DUF218 domain SH05_RS11125 PF00171 Aldehyde dehydrogenase family SH05_RS11130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH05_RS11130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH05_RS11135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH05_RS11135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH05_RS11140 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH05_RS11140 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH05_RS11145 PF01292 Prokaryotic cytochrome b561 SH05_RS11155 PF01848 Hok/gef family SH05_RS11160 PF00672 HAMP domain SH05_RS11160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH05_RS11160 PF02203 Tar ligand binding domain homologue SH05_RS11165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS11165 PF03466 LysR substrate binding domain SH05_RS11170 PF07063 Domain of unknown function (DUF1338) SH05_RS11175 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH05_RS11185 PF04325 Protein of unknown function (DUF465) SH05_RS11190 PF13302 Acetyltransferase (GNAT) domain SH05_RS11195 PF18836 Beta solenoid repeat from YDCK SH05_RS11200 PF03595 Voltage-dependent anion channel SH05_RS11205 PF03848 Tellurite resistance protein TehB SH05_RS11210 PF11769 Protein of unknown function (DUF3313) SH05_RS11225 PF07282 Putative transposase DNA-binding domain SH05_RS11225 PF12323 Helix-turn-helix domain SH05_RS11225 PF01385 Probable transposase SH05_RS11230 PF03594 Benzoate membrane transport protein SH05_RS11235 PF07883 Cupin domain SH05_RS11235 PF01381 Helix-turn-helix SH05_RS11240 PF12392 Collagenase SH05_RS11240 PF01136 Peptidase family U32 SH05_RS11245 PF10829 Protein of unknown function (DUF2554) SH05_RS11250 PF07927 HicA toxin of bacterial toxin-antitoxin, SH05_RS11255 PF01381 Helix-turn-helix SH05_RS11255 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system SH05_RS11260 PF00155 Aminotransferase class I and II SH05_RS11260 PF00392 Bacterial regulatory proteins, gntR family SH05_RS11265 PF13416 Bacterial extracellular solute-binding protein SH05_RS11270 PF00005 ABC transporter SH05_RS11270 PF08402 TOBE domain SH05_RS11275 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS11280 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS11285 PF00171 Aldehyde dehydrogenase family SH05_RS11295 PF10753 Toxin GhoT_OrtT SH05_RS11300 PF10735 Protein of unknown function (DUF2526) SH05_RS11305 PF04657 Putative inner membrane exporter, YdcZ SH05_RS11310 PF00583 Acetyltransferase (GNAT) family SH05_RS11315 PF00107 Zinc-binding dehydrogenase SH05_RS11315 PF16884 N-terminal domain of oxidoreductase SH05_RS11320 PF07729 FCD domain SH05_RS11320 PF00392 Bacterial regulatory proteins, gntR family SH05_RS11325 PF00593 TonB dependent receptor SH05_RS11325 PF07715 TonB-dependent Receptor Plug Domain SH05_RS11335 PF00324 Amino acid permease SH05_RS11340 PF13417 Glutathione S-transferase, N-terminal domain SH05_RS11345 PF17520 Family of unknown function (DUF5445) SH05_RS11350 PF03527 RHS protein SH05_RS11360 PF13808 DDE_Tnp_1-associated SH05_RS11360 PF01609 Transposase DDE domain SH05_RS11365 PF13808 DDE_Tnp_1-associated SH05_RS11365 PF01609 Transposase DDE domain SH05_RS11370 PF01361 Tautomerase enzyme SH05_RS11375 PF01613 Flavin reductase like domain SH05_RS11380 PF00797 N-acetyltransferase SH05_RS11385 PF02567 Phenazine biosynthesis-like protein SH05_RS11390 PF02665 Nitrate reductase gamma subunit SH05_RS11395 PF02613 Nitrate reductase delta subunit SH05_RS11400 PF13247 4Fe-4S dicluster domain SH05_RS11400 PF14711 Respiratory nitrate reductase beta C-terminal SH05_RS11405 PF00384 Molybdopterin oxidoreductase SH05_RS11405 PF14710 Respiratory nitrate reductase alpha N-terminal SH05_RS11405 PF01568 Molydopterin dinucleotide binding domain SH05_RS11410 PF07690 Major Facilitator Superfamily SH05_RS11420 PF00267 Gram-negative porin SH05_RS11425 PF00892 EamA-like transporter family SH05_RS11430 PF01568 Molydopterin dinucleotide binding domain SH05_RS11430 PF00384 Molybdopterin oxidoreductase SH05_RS11430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS11435 PF00384 Molybdopterin oxidoreductase SH05_RS11435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS11435 PF01568 Molydopterin dinucleotide binding domain SH05_RS11440 PF12800 4Fe-4S binding domain SH05_RS11440 PF09163 Formate dehydrogenase N, transmembrane SH05_RS11440 PF13247 4Fe-4S dicluster domain SH05_RS11445 PF01292 Prokaryotic cytochrome b561 SH05_RS11450 PF01381 Helix-turn-helix SH05_RS11455 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS11455 PF00107 Zinc-binding dehydrogenase SH05_RS11460 PF00390 Malic enzyme, N-terminal domain SH05_RS11460 PF03949 Malic enzyme, NAD binding domain SH05_RS11465 PF08136 30S ribosomal protein subunit S22 family SH05_RS11470 PF10684 Putative biofilm-dependent modulation protein SH05_RS11475 PF02566 OsmC-like protein SH05_RS11480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH05_RS11480 PF00005 ABC transporter SH05_RS11485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH05_RS11485 PF00005 ABC transporter SH05_RS11490 PF12911 N-terminal TM domain of oligopeptide transport permease C SH05_RS11490 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS11495 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS11500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS11505 PF01427 D-ala-D-ala dipeptidase SH05_RS11510 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS11510 PF00563 EAL domain SH05_RS11510 PF13426 PAS domain SH05_RS11515 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS11520 PF02638 Glycosyl hydrolase-like 10 SH05_RS11525 PF13520 Amino acid permease SH05_RS11530 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH05_RS11540 PF00675 Insulinase (Peptidase family M16) SH05_RS11540 PF05193 Peptidase M16 inactive domain SH05_RS11545 PF07715 TonB-dependent Receptor Plug Domain SH05_RS11550 PF06472 ABC transporter transmembrane region 2 SH05_RS11550 PF00005 ABC transporter SH05_RS11555 PF13186 Iron-sulfur cluster-binding domain SH05_RS11555 PF04055 Radical SAM superfamily SH05_RS11560 PF00884 Sulfatase SH05_RS11565 PF12833 Helix-turn-helix domain SH05_RS11570 PF17073 Two-component-system connector protein SH05_RS11575 PF00384 Molybdopterin oxidoreductase SH05_RS11580 PF09160 FimH, mannose binding SH05_RS11585 PF00419 Fimbrial protein SH05_RS11590 PF00419 Fimbrial protein SH05_RS11595 PF13953 PapC C-terminal domain SH05_RS11595 PF00577 Outer membrane usher protein SH05_RS11605 PF13657 HipA N-terminal domain SH05_RS11605 PF07804 HipA-like C-terminal domain SH05_RS11610 PF01381 Helix-turn-helix SH05_RS11615 PF03797 Autotransporter beta-domain SH05_RS11620 PF13018 Extended Signal Peptide of Type V secretion system SH05_RS11625 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH05_RS11625 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH05_RS11630 PF04198 Putative sugar-binding domain SH05_RS11635 PF00005 ABC transporter SH05_RS11640 PF02653 Branched-chain amino acid transport system / permease component SH05_RS11645 PF02653 Branched-chain amino acid transport system / permease component SH05_RS11650 PF13407 Periplasmic binding protein domain SH05_RS11655 PF01791 DeoC/LacD family aldolase SH05_RS11660 PF03992 Antibiotic biosynthesis monooxygenase SH05_RS11665 PF13649 Methyltransferase domain SH05_RS11670 PF01062 Bestrophin, RFP-TM, chloride channel SH05_RS11680 PF08125 Mannitol dehydrogenase C-terminal domain SH05_RS11680 PF01232 Mannitol dehydrogenase Rossmann domain SH05_RS11685 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS11690 PF13811 Domain of unknown function (DUF4186) SH05_RS11695 PF04960 Glutaminase SH05_RS11700 PF00171 Aldehyde dehydrogenase family SH05_RS11705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS11705 PF03466 LysR substrate binding domain SH05_RS11715 PF07690 Major Facilitator Superfamily SH05_RS11720 PF01914 MarC family integral membrane protein SH05_RS11725 PF01047 MarR family SH05_RS11730 PF12833 Helix-turn-helix domain SH05_RS11735 PF13999 MarB protein SH05_RS11740 PF00892 EamA-like transporter family SH05_RS11745 PF07690 Major Facilitator Superfamily SH05_RS11755 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS11760 PF04076 Bacterial OB fold (BOF) protein SH05_RS11765 PF02464 Competence-damaged protein SH05_RS11770 PF01432 Peptidase family M3 SH05_RS11775 PF00106 short chain dehydrogenase SH05_RS11780 PF07729 FCD domain SH05_RS11780 PF00392 Bacterial regulatory proteins, gntR family SH05_RS11785 PF14001 YdfZ protein SH05_RS11790 PF08125 Mannitol dehydrogenase C-terminal domain SH05_RS11790 PF01232 Mannitol dehydrogenase Rossmann domain SH05_RS11795 PF07690 Major Facilitator Superfamily SH05_RS11795 PF00083 Sugar (and other) transporter SH05_RS11805 PF00239 Resolvase, N terminal domain SH05_RS11805 PF02796 Helix-turn-helix domain of resolvase SH05_RS11810 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH05_RS11815 PF03335 Phage tail fibre repeat SH05_RS11815 PF07484 Phage Tail Collar Domain SH05_RS11820 PF07471 Phage DNA packaging protein Nu1 SH05_RS11825 PF13132 Domain of unknown function (DUF3950) SH05_RS11830 PF07166 Protein of unknown function (DUF1398) SH05_RS11835 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH05_RS11845 PF00313 'Cold-shock' DNA-binding domain SH05_RS11850 PF10721 Protein of unknown function (DUF2514) SH05_RS11855 PF00959 Phage lysozyme SH05_RS11860 PF07041 Protein of unknown function (DUF1327) SH05_RS11865 PF04971 Bacteriophage P21 holin S SH05_RS11870 PF00313 'Cold-shock' DNA-binding domain SH05_RS11875 PF00313 'Cold-shock' DNA-binding domain SH05_RS11880 PF03589 Antitermination protein SH05_RS11885 PF06147 Protein of unknown function (DUF968) SH05_RS11900 PF01848 Hok/gef family SH05_RS11905 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SH05_RS11910 PF04221 RelB antitoxin SH05_RS11915 PF14282 FlxA-like protein SH05_RS11930 PF01381 Helix-turn-helix SH05_RS11935 PF07151 Protein of unknown function (DUF1391) SH05_RS11950 PF05358 DicB protein SH05_RS11955 PF07358 Protein of unknown function (DUF1482) SH05_RS11965 PF00665 Integrase core domain SH05_RS11965 PF13276 HTH-like domain SH05_RS11970 PF00589 Phage integrase family SH05_RS11970 PF12167 Arm DNA-binding domain SH05_RS11975 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS11975 PF00107 Zinc-binding dehydrogenase SH05_RS11980 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH05_RS11980 PF13378 Enolase C-terminal domain-like SH05_RS11985 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SH05_RS11990 PF06932 Protein of unknown function (DUF1283) SH05_RS11995 PF13302 Acetyltransferase (GNAT) domain SH05_RS12000 PF06788 Uncharacterised protein family (UPF0257) SH05_RS12005 PF06649 Protein of unknown function (DUF1161) SH05_RS12010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS12010 PF00384 Molybdopterin oxidoreductase SH05_RS12010 PF01568 Molydopterin dinucleotide binding domain SH05_RS12015 PF00384 Molybdopterin oxidoreductase SH05_RS12015 PF01568 Molydopterin dinucleotide binding domain SH05_RS12015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS12020 PF12800 4Fe-4S binding domain SH05_RS12020 PF13247 4Fe-4S dicluster domain SH05_RS12025 PF04976 DMSO reductase anchor subunit (DmsC) SH05_RS12030 PF02613 Nitrate reductase delta subunit SH05_RS12035 PF00654 Voltage gated chloride channel SH05_RS12045 PF00480 ROK family SH05_RS12050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS12050 PF03466 LysR substrate binding domain SH05_RS12055 PF07690 Major Facilitator Superfamily SH05_RS12070 PF00089 Trypsin SH05_RS12075 PF00893 Small Multidrug Resistance protein SH05_RS12080 PF00893 Small Multidrug Resistance protein SH05_RS12085 PF01594 AI-2E family transporter SH05_RS12090 PF02233 NAD(P) transhydrogenase beta subunit SH05_RS12095 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SH05_RS12095 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SH05_RS12095 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SH05_RS12100 PF07338 Protein of unknown function (DUF1471) SH05_RS12105 PF13520 Amino acid permease SH05_RS12115 PF06942 GlpM protein SH05_RS12120 PF00072 Response regulator receiver domain SH05_RS12120 PF00486 Transcriptional regulatory protein, C terminal SH05_RS12125 PF00672 HAMP domain SH05_RS12125 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS12125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS12130 PF05472 DNA replication terminus site-binding protein (Ter protein) SH05_RS12135 PF00206 Lyase SH05_RS12135 PF10415 Fumarase C C-terminus SH05_RS12140 PF05683 Fumarase C-terminus SH05_RS12140 PF05681 Fumarate hydratase (Fumerase) SH05_RS12145 PF01238 Phosphomannose isomerase type I SH05_RS12150 PF06097 Bacterial protein of unknown function (DUF945) SH05_RS12155 PF03573 outer membrane porin, OprD family SH05_RS12165 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH05_RS12165 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH05_RS12165 PF00703 Glycosyl hydrolases family 2 SH05_RS12170 PF00440 Bacterial regulatory proteins, tetR family SH05_RS12180 PF00356 Bacterial regulatory proteins, lacI family SH05_RS12180 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH05_RS12185 PF00367 phosphotransferase system, EIIB SH05_RS12185 PF02378 Phosphotransferase system, EIIC SH05_RS12190 PF00155 Aminotransferase class I and II SH05_RS12195 PF00962 Adenosine/AMP deaminase SH05_RS12200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH05_RS12200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH05_RS12210 PF05321 Haemolysin expression modulating protein SH05_RS12215 PF10754 Protein of unknown function (DUF2569) SH05_RS12220 PF02508 Rnf-Nqr subunit, membrane protein SH05_RS12225 PF04060 Putative Fe-S cluster SH05_RS12230 PF13375 RnfC Barrel sandwich hybrid domain SH05_RS12230 PF10531 SLBB domain SH05_RS12230 PF12838 4Fe-4S dicluster domain SH05_RS12230 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH05_RS12235 PF03116 NQR2, RnfD, RnfE family SH05_RS12240 PF04205 FMN-binding domain SH05_RS12245 PF02508 Rnf-Nqr subunit, membrane protein SH05_RS12250 PF10576 Iron-sulfur binding domain of endonuclease III SH05_RS12250 PF00633 Helix-hairpin-helix motif SH05_RS12250 PF00730 HhH-GPD superfamily base excision DNA repair protein SH05_RS12260 PF00854 POT family SH05_RS12265 PF00043 Glutathione S-transferase, C-terminal domain SH05_RS12265 PF02798 Glutathione S-transferase, N-terminal domain SH05_RS12270 PF08543 Phosphomethylpyrimidine kinase SH05_RS12275 PF00579 tRNA synthetases class I (W and Y) SH05_RS12275 PF01479 S4 domain SH05_RS12280 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SH05_RS12280 PF01243 Pyridoxamine 5'-phosphate oxidase SH05_RS12285 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme SH05_RS12290 PF03702 Anhydro-N-acetylmuramic acid kinase SH05_RS12295 PF05433 Glycine zipper 2TM domain SH05_RS12300 PF01047 MarR family SH05_RS12305 PF07869 Protein of unknown function (DUF1656) SH05_RS12310 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS12310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS12315 PF04632 Fusaric acid resistance protein family SH05_RS12320 PF00080 Copper/zinc superoxide dismutase (SODC) SH05_RS12325 PF00248 Aldo/keto reductase family SH05_RS12330 PF06945 Protein of unknown function (DUF1289) SH05_RS12335 PF16925 Tetracyclin repressor-like, C-terminal domain SH05_RS12335 PF00440 Bacterial regulatory proteins, tetR family SH05_RS12340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH05_RS12345 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH05_RS12350 PF00929 Exonuclease SH05_RS12355 PF00270 DEAD/DEAH box helicase SH05_RS12355 PF00271 Helicase conserved C-terminal domain SH05_RS12355 PF08494 DEAD/H associated SH05_RS12360 PF00462 Glutaredoxin SH05_RS12365 PF00877 NlpC/P60 family SH05_RS12370 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH05_RS12370 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH05_RS12375 PF07690 Major Facilitator Superfamily SH05_RS12385 PF00356 Bacterial regulatory proteins, lacI family SH05_RS12390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS12390 PF03466 LysR substrate binding domain SH05_RS12395 PF07690 Major Facilitator Superfamily SH05_RS12405 PF00677 Lumazine binding domain SH05_RS12410 PF01554 MatE SH05_RS12415 PF03212 Pertactin SH05_RS12415 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH05_RS12430 PF08803 Putative mono-oxygenase ydhR SH05_RS12435 PF13454 FAD-NAD(P)-binding SH05_RS12445 PF01292 Prokaryotic cytochrome b561 SH05_RS12450 PF13247 4Fe-4S dicluster domain SH05_RS12460 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SH05_RS12460 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH05_RS12465 PF12800 4Fe-4S binding domain SH05_RS12465 PF13247 4Fe-4S dicluster domain SH05_RS12470 PF10965 Protein of unknown function (DUF2767) SH05_RS12475 PF00224 Pyruvate kinase, barrel domain SH05_RS12475 PF02887 Pyruvate kinase, alpha/beta domain SH05_RS12480 PF04728 Lipoprotein leucine-zipper SH05_RS12485 PF03734 L,D-transpeptidase catalytic domain SH05_RS12485 PF01476 LysM domain SH05_RS12485 PF17969 L,D-transpeptidase C-terminal domain SH05_RS12490 PF02657 Fe-S metabolism associated domain SH05_RS12495 PF00266 Aminotransferase class-V SH05_RS12500 PF01458 Uncharacterized protein family (UPF0051) SH05_RS12505 PF00005 ABC transporter SH05_RS12510 PF01458 Uncharacterized protein family (UPF0051) SH05_RS12515 PF01521 Iron-sulphur cluster biosynthesis SH05_RS12520 PF15930 Domain of unknown function SH05_RS12525 PF03061 Thioesterase superfamily SH05_RS12530 PF01565 FAD binding domain SH05_RS12530 PF13183 4Fe-4S dicluster domain SH05_RS12530 PF02913 FAD linked oxidases, C-terminal domain SH05_RS12535 PF01594 AI-2E family transporter SH05_RS12540 PF08965 Domain of unknown function (DUF1870) SH05_RS12545 PF07690 Major Facilitator Superfamily SH05_RS12550 PF07690 Major Facilitator Superfamily SH05_RS12555 PF08501 Shikimate dehydrogenase substrate binding domain SH05_RS12555 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH05_RS12560 PF01487 Type I 3-dehydroquinase SH05_RS12565 PF01144 Coenzyme A transferase SH05_RS12570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH05_RS12570 PF02770 Acyl-CoA dehydrogenase, middle domain SH05_RS12570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH05_RS12575 PF12833 Helix-turn-helix domain SH05_RS12575 PF02311 AraC-like ligand binding domain SH05_RS12585 PF01012 Electron transfer flavoprotein domain SH05_RS12590 PF00766 Electron transfer flavoprotein FAD-binding domain SH05_RS12590 PF01012 Electron transfer flavoprotein domain SH05_RS12595 PF01494 FAD binding domain SH05_RS12605 PF00501 AMP-binding enzyme SH05_RS12605 PF13193 AMP-binding enzyme C-terminal domain SH05_RS12610 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SH05_RS12610 PF02896 PEP-utilising enzyme, TIM barrel domain SH05_RS12610 PF00391 PEP-utilising enzyme, mobile domain SH05_RS12620 PF03618 Kinase/pyrophosphorylase SH05_RS12625 PF00793 DAHP synthetase I family SH05_RS12630 PF10636 Hemin uptake protein hemP SH05_RS12635 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SH05_RS12640 PF00563 EAL domain SH05_RS12645 PF00877 NlpC/P60 family SH05_RS12655 PF00255 Glutathione peroxidase SH05_RS12660 PF01032 FecCD transport family SH05_RS12665 PF00216 Bacterial DNA-binding protein SH05_RS12670 PF01588 Putative tRNA binding domain SH05_RS12670 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SH05_RS12670 PF03147 Ferredoxin-fold anticodon binding domain SH05_RS12670 PF03483 B3/4 domain SH05_RS12670 PF03484 tRNA synthetase B5 domain SH05_RS12675 PF01409 tRNA synthetases class II core domain (F) SH05_RS12675 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SH05_RS12685 PF00453 Ribosomal protein L20 SH05_RS12690 PF01632 Ribosomal protein L35 SH05_RS12695 PF05198 Translation initiation factor IF-3, N-terminal domain SH05_RS12695 PF00707 Translation initiation factor IF-3, C-terminal domain SH05_RS12700 PF03129 Anticodon binding domain SH05_RS12700 PF02824 TGS domain SH05_RS12700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH05_RS12700 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH05_RS12705 PF07906 ShET2 enterotoxin, N-terminal region SH05_RS12715 PF04338 Protein of unknown function, DUF481 SH05_RS12720 PF00294 pfkB family carbohydrate kinase SH05_RS12725 PF11080 Endoribonuclease GhoS SH05_RS12730 PF03881 Fructosamine kinase SH05_RS12735 PF14002 YniB-like protein SH05_RS12740 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS12745 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH05_RS12750 PF00375 Sodium:dicarboxylate symporter family SH05_RS12760 PF10729 Cell division activator CedA SH05_RS12765 PF18011 C-terminal domain found in long catalases SH05_RS12765 PF06628 Catalase-related immune-responsive SH05_RS12765 PF00199 Catalase SH05_RS12770 PF04794 YdjC-like protein SH05_RS12775 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH05_RS12775 PF02056 Family 4 glycosyl hydrolase SH05_RS12780 PF07883 Cupin domain SH05_RS12780 PF12833 Helix-turn-helix domain SH05_RS12785 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SH05_RS12790 PF02378 Phosphotransferase system, EIIC SH05_RS12795 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS12800 PF04355 SmpA / OmlA family SH05_RS12805 PF02540 NAD synthase SH05_RS12820 PF05962 HutD SH05_RS12825 PF07813 LTXXQ motif family protein SH05_RS12830 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SH05_RS12835 PF04996 Succinylarginine dihydrolase SH05_RS12840 PF00171 Aldehyde dehydrogenase family SH05_RS12845 PF04958 Arginine N-succinyltransferase beta subunit SH05_RS12850 PF00202 Aminotransferase class-III SH05_RS12855 PF03372 Endonuclease/Exonuclease/phosphatase family SH05_RS12860 PF09335 SNARE associated Golgi protein SH05_RS12870 PF09335 SNARE associated Golgi protein SH05_RS12875 PF02627 Carboxymuconolactone decarboxylase family SH05_RS12880 PF13416 Bacterial extracellular solute-binding protein SH05_RS12885 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS12890 PF00005 ABC transporter SH05_RS12895 PF00581 Rhodanese-like domain SH05_RS12900 PF01066 CDP-alcohol phosphatidyltransferase SH05_RS12905 PF00293 NUDIX domain SH05_RS12910 PF07383 Protein of unknown function (DUF1496) SH05_RS12915 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH05_RS12915 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SH05_RS12920 PF06889 Protein of unknown function (DUF1266) SH05_RS12925 PF01751 Toprim domain SH05_RS12925 PF01131 DNA topoisomerase SH05_RS12930 PF00586 AIR synthase related protein, N-terminal domain SH05_RS12930 PF02769 AIR synthase related protein, C-terminal domain SH05_RS12940 PF00881 Nitroreductase family SH05_RS12950 PF01343 Peptidase family S49 SH05_RS12955 PF17763 Glutaminase/Asparaginase C-terminal domain SH05_RS12955 PF00710 Asparaginase, N-terminal SH05_RS12960 PF00857 Isochorismatase family SH05_RS12965 PF00083 Sugar (and other) transporter SH05_RS12970 PF00455 DeoR C terminal sensor domain SH05_RS12970 PF08220 DeoR-like helix-turn-helix domain SH05_RS12975 PF00248 Aldo/keto reductase family SH05_RS12980 PF00294 pfkB family carbohydrate kinase SH05_RS12985 PF01116 Fructose-bisphosphate aldolase class-II SH05_RS12990 PF00107 Zinc-binding dehydrogenase SH05_RS12990 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS12995 PF00083 Sugar (and other) transporter SH05_RS13000 PF00107 Zinc-binding dehydrogenase SH05_RS13000 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS13005 PF07023 Protein of unknown function (DUF1315) SH05_RS13010 PF01641 SelR domain SH05_RS13015 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH05_RS13015 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH05_RS13020 PF01263 Aldose 1-epimerase SH05_RS13025 PF00248 Aldo/keto reductase family SH05_RS13030 PF06629 MltA-interacting protein MipA SH05_RS13035 PF06798 PrkA serine protein kinase C-terminal domain SH05_RS13035 PF08298 PrkA AAA domain SH05_RS13040 PF04285 Protein of unknown function (DUF444) SH05_RS13045 PF17158 Membrane-associated sensor, integral membrane domain SH05_RS13045 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS13050 PF17155 Gammaproteobacterial periplasmic sensor domain SH05_RS13050 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS13055 PF04073 Aminoacyl-tRNA editing domain SH05_RS13065 PF04284 Protein of unknown function (DUF441) SH05_RS13070 PF12833 Helix-turn-helix domain SH05_RS13070 PF02311 AraC-like ligand binding domain SH05_RS13075 PF07690 Major Facilitator Superfamily SH05_RS13080 PF04343 Protein of unknown function, DUF488 SH05_RS13085 PF03891 Domain of unknown function (DUF333) SH05_RS13090 PF13185 GAF domain SH05_RS13090 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS13100 PF04226 Transglycosylase associated protein SH05_RS13105 PF08956 Domain of unknown function (DUF1869) SH05_RS13110 PF09313 Domain of unknown function (DUF1971) SH05_RS13115 PF01810 LysE type translocator SH05_RS13120 PF03466 LysR substrate binding domain SH05_RS13120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS13125 PF00180 Isocitrate/isopropylmalate dehydrogenase SH05_RS13130 PF02028 BCCT, betaine/carnitine/choline family transporter SH05_RS13135 PF00355 Rieske [2Fe-2S] domain SH05_RS13135 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH05_RS13140 PF00175 Oxidoreductase NAD-binding domain SH05_RS13140 PF00970 Oxidoreductase FAD-binding domain SH05_RS13140 PF00111 2Fe-2S iron-sulfur cluster binding domain SH05_RS13145 PF00570 HRDC domain SH05_RS13145 PF01612 3'-5' exonuclease SH05_RS13150 PF13193 AMP-binding enzyme C-terminal domain SH05_RS13150 PF00501 AMP-binding enzyme SH05_RS13155 PF03843 Outer membrane lipoprotein Slp family SH05_RS13160 PF00814 Glycoprotease family SH05_RS13165 PF04851 Type III restriction enzyme, res subunit SH05_RS13165 PF13307 Helicase C-terminal domain SH05_RS13170 PF01042 Endoribonuclease L-PSP SH05_RS13175 PF08986 Domain of unknown function (DUF1889) SH05_RS13180 PF03701 Uncharacterised protein family (UPF0181) SH05_RS13185 PF04715 Anthranilate synthase component I, N terminal region SH05_RS13185 PF00425 chorismate binding enzyme SH05_RS13190 PF00293 NUDIX domain SH05_RS13195 PF03313 Serine dehydratase alpha chain SH05_RS13195 PF03315 Serine dehydratase beta chain SH05_RS13200 PF00563 EAL domain SH05_RS13200 PF12792 CSS motif domain associated with EAL SH05_RS13205 PF03471 Transporter associated domain SH05_RS13205 PF03741 Integral membrane protein TerC family SH05_RS13215 PF03830 PTS system sorbose subfamily IIB component SH05_RS13215 PF03610 PTS system fructose IIA component SH05_RS13220 PF03609 PTS system sorbose-specific iic component SH05_RS13225 PF03613 PTS system mannose/fructose/sorbose family IID component SH05_RS13230 PF06173 Protein of unknown function (DUF986) SH05_RS13240 PF02659 Putative manganese efflux pump SH05_RS13245 PF13847 Methyltransferase domain SH05_RS13250 PF00313 'Cold-shock' DNA-binding domain SH05_RS13255 PF10736 Protein of unknown function (DUF2627) SH05_RS13265 PF13974 YebO-like protein SH05_RS13270 PF13998 MgrB protein SH05_RS13275 PF13996 YobH-like protein SH05_RS13280 PF01614 Bacterial transcriptional regulator SH05_RS13280 PF09339 IclR helix-turn-helix domain SH05_RS13285 PF07690 Major Facilitator Superfamily SH05_RS13295 PF03572 Peptidase family S41 SH05_RS13295 PF00595 PDZ domain SH05_RS13295 PF11818 C-terminal domain of tail specific protease (DUF3340) SH05_RS13295 PF17804 Tail specific protease N-terminal domain SH05_RS13300 PF17516 ProQ C-terminal domain SH05_RS13300 PF04352 ProQ/FINO family SH05_RS13305 PF13185 GAF domain SH05_RS13310 PF04403 Paraquat-inducible protein A SH05_RS13315 PF02470 MlaD protein SH05_RS13325 PF07351 Protein of unknown function (DUF1480) SH05_RS13330 PF07358 Protein of unknown function (DUF1482) SH05_RS13335 PF00149 Calcineurin-like phosphoesterase SH05_RS13345 PF10709 Protein of unknown function (DUF2511) SH05_RS13350 PF05425 Copper resistance protein D SH05_RS13355 PF04234 CopC domain SH05_RS13360 PF06440 DNA polymerase III, theta subunit SH05_RS13365 PF00795 Carbon-nitrogen hydrolase SH05_RS13370 PF00929 Exonuclease SH05_RS13375 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SH05_RS13375 PF00326 Prolyl oligopeptidase family SH05_RS13380 PF04391 Protein of unknown function (DUF533) SH05_RS13390 PF13995 YebF-like protein SH05_RS13395 PF07130 YebG protein SH05_RS13400 PF02222 ATP-grasp domain SH05_RS13405 PF01081 KDPG and KHG aldolase SH05_RS13410 PF00920 Dehydratase family SH05_RS13415 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SH05_RS13415 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SH05_RS13425 PF01418 Helix-turn-helix domain, rpiR family SH05_RS13425 PF01380 SIS domain SH05_RS13430 PF00224 Pyruvate kinase, barrel domain SH05_RS13430 PF02887 Pyruvate kinase, alpha/beta domain SH05_RS13435 PF03279 Bacterial lipid A biosynthesis acyltransferase SH05_RS13440 PF01551 Peptidase family M23 SH05_RS13440 PF08525 Opacity-associated protein A N-terminal motif SH05_RS13440 PF01476 LysM domain SH05_RS13445 PF01297 Zinc-uptake complex component A periplasmic SH05_RS13450 PF00005 ABC transporter SH05_RS13455 PF00950 ABC 3 transport family SH05_RS13460 PF17864 RuvB AAA lid domain SH05_RS13460 PF05491 RuvB C-terminal winged helix domain SH05_RS13460 PF05496 Holliday junction DNA helicase RuvB P-loop domain SH05_RS13465 PF01330 RuvA N terminal domain SH05_RS13465 PF07499 RuvA, C-terminal domain SH05_RS13470 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH05_RS13475 PF02075 Crossover junction endodeoxyribonuclease RuvC SH05_RS13480 PF01709 Transcriptional regulator SH05_RS13485 PF00293 NUDIX domain SH05_RS13490 PF00152 tRNA synthetases class II (D, K and N) SH05_RS13490 PF02938 GAD domain SH05_RS13490 PF01336 OB-fold nucleic acid binding domain SH05_RS13495 PF00857 Isochorismatase family SH05_RS13500 PF01904 Protein of unknown function DUF72 SH05_RS13505 PF01124 MAPEG family SH05_RS13510 PF13649 Methyltransferase domain SH05_RS13515 PF08003 Protein of unknown function (DUF1698) SH05_RS13520 PF01568 Molydopterin dinucleotide binding domain SH05_RS13520 PF18364 Molybdopterin oxidoreductase N-terminal domain SH05_RS13520 PF00384 Molybdopterin oxidoreductase SH05_RS13525 PF03264 NapC/NirT cytochrome c family, N-terminal region SH05_RS13530 PF03932 CutC family SH05_RS13535 PF06185 YecM protein SH05_RS13540 PF00750 tRNA synthetases class I (R) SH05_RS13540 PF05746 DALR anticodon binding domain SH05_RS13540 PF03485 Arginyl tRNA synthetase N terminal domain SH05_RS13545 PF07007 Lysozyme inhibitor LprI SH05_RS13550 PF06366 Flagellar protein FlhE SH05_RS13555 PF00771 FHIPEP family SH05_RS13560 PF01312 FlhB HrpN YscU SpaS Family SH05_RS13565 PF04344 Chemotaxis phosphatase, CheZ SH05_RS13570 PF00072 Response regulator receiver domain SH05_RS13575 PF01339 CheB methylesterase SH05_RS13575 PF00072 Response regulator receiver domain SH05_RS13580 PF01739 CheR methyltransferase, SAM binding domain SH05_RS13580 PF03705 CheR methyltransferase, all-alpha domain SH05_RS13585 PF00672 HAMP domain SH05_RS13585 PF02203 Tar ligand binding domain homologue SH05_RS13585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH05_RS13590 PF02203 Tar ligand binding domain homologue SH05_RS13590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH05_RS13590 PF00672 HAMP domain SH05_RS13595 PF01584 CheW-like domain SH05_RS13600 PF01584 CheW-like domain SH05_RS13600 PF09078 CheY binding SH05_RS13600 PF01627 Hpt domain SH05_RS13600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS13600 PF02895 Signal transducing histidine kinase, homodimeric domain SH05_RS13605 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH05_RS13605 PF00691 OmpA family SH05_RS13610 PF01618 MotA/TolQ/ExbB proton channel family SH05_RS13615 PF05280 Flagellar transcriptional activator (FlhC) SH05_RS13620 PF05247 Flagellar transcriptional activator (FlhD) SH05_RS13625 PF00582 Universal stress protein family SH05_RS13630 PF00982 Glycosyltransferase family 20 SH05_RS13635 PF02358 Trehalose-phosphatase SH05_RS13640 PF02653 Branched-chain amino acid transport system / permease component SH05_RS13645 PF00005 ABC transporter SH05_RS13650 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH05_RS13655 PF00210 Ferritin-like domain SH05_RS13660 PF10964 Protein of unknown function (DUF2766) SH05_RS13670 PF13992 YecR-like lipoprotein SH05_RS13675 PF00210 Ferritin-like domain SH05_RS13680 PF10678 Protein of unknown function (DUF2492) SH05_RS13685 PF03222 Tryptophan/tyrosine permease family SH05_RS13690 PF03695 Uncharacterised protein family (UPF0149) SH05_RS13690 PF02810 SEC-C motif SH05_RS13710 PF01066 CDP-alcohol phosphatidyltransferase SH05_RS13715 PF02151 UvrB/uvrC motif SH05_RS13715 PF08459 UvrC Helix-hairpin-helix N-terminal SH05_RS13715 PF01541 GIY-YIG catalytic domain SH05_RS13720 PF00072 Response regulator receiver domain SH05_RS13720 PF00196 Bacterial regulatory proteins, luxR family SH05_RS13730 PF10769 Protein of unknown function (DUF2594) SH05_RS13735 PF03472 Autoinducer binding domain SH05_RS13735 PF00196 Bacterial regulatory proteins, luxR family SH05_RS13740 PF00005 ABC transporter SH05_RS13745 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS13750 PF00291 Pyridoxal-phosphate dependent enzyme SH05_RS13755 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS13760 PF02899 Phage integrase, N-terminal SAM-like domain SH05_RS13765 PF04542 Sigma-70 region 2 SH05_RS13765 PF04539 Sigma-70 region 3 SH05_RS13765 PF04545 Sigma-70, region 4 SH05_RS13770 PF00669 Bacterial flagellin N-terminal helical region SH05_RS13770 PF08884 Flagellin D3 domain SH05_RS13770 PF00700 Bacterial flagellin C-terminal helical region SH05_RS13775 PF02465 Flagellar hook-associated protein 2 N-terminus SH05_RS13775 PF07195 Flagellar hook-associated protein 2 C-terminus SH05_RS13780 PF02561 Flagellar protein FliS SH05_RS13785 PF05400 Flagellar protein FliT SH05_RS13790 PF02806 Alpha amylase, C-terminal all-beta domain SH05_RS13790 PF00128 Alpha amylase, catalytic domain SH05_RS13795 PF13987 YedD-like protein SH05_RS13800 PF04143 Sulphur transport SH05_RS13805 PF01206 Sulfurtransferase TusA SH05_RS13810 PF02586 SOS response associated peptidase (SRAP) SH05_RS13815 PF00583 Acetyltransferase (GNAT) family SH05_RS13835 PF02049 Flagellar hook-basal body complex protein FliE SH05_RS13840 PF08345 Flagellar M-ring protein C-terminal SH05_RS13840 PF01514 Secretory protein of YscJ/FliF family SH05_RS13845 PF01706 FliG C-terminal domain SH05_RS13845 PF14841 FliG middle domain SH05_RS13845 PF14842 FliG N-terminal domain SH05_RS13850 PF02108 Flagellar assembly protein FliH SH05_RS13855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH05_RS13855 PF18269 T3SS EscN ATPase C-terminal domain SH05_RS13860 PF02050 Flagellar FliJ protein SH05_RS13865 PF02120 Flagellar hook-length control protein FliK SH05_RS13870 PF03748 Flagellar basal body-associated protein FliL SH05_RS13875 PF02154 Flagellar motor switch protein FliM SH05_RS13875 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH05_RS13880 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH05_RS13880 PF16973 Flagellar motor switch protein FliN N-terminal SH05_RS13885 PF04347 Flagellar biosynthesis protein, FliO SH05_RS13890 PF00813 FliP family SH05_RS13895 PF01313 Bacterial export proteins, family 3 SH05_RS13900 PF01311 Bacterial export proteins, family 1 SH05_RS13905 PF00196 Bacterial regulatory proteins, luxR family SH05_RS13910 PF10781 Dextransucrase DSRB SH05_RS13915 PF10733 Protein of unknown function (DUF2525) SH05_RS13925 PF17151 Periplasmic sensor domain SH05_RS13925 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS13930 PF09926 Uncharacterized small protein (DUF2158) SH05_RS13935 PF05661 Protein of unknown function (DUF808) SH05_RS13940 PF00892 EamA-like transporter family SH05_RS13945 PF03852 DNA mismatch endonuclease Vsr SH05_RS13950 PF18284 DNA methylase N-terminal domain SH05_RS13950 PF00145 C-5 cytosine-specific DNA methylase SH05_RS13955 PF01966 HD domain SH05_RS13985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS13985 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS13990 PF00072 Response regulator receiver domain SH05_RS13990 PF00486 Transcriptional regulatory protein, C terminal SH05_RS13995 PF00576 HIUase/Transthyretin family SH05_RS14000 PF00174 Oxidoreductase molybdopterin binding domain SH05_RS14005 PF01794 Ferric reductase like transmembrane component SH05_RS14010 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SH05_RS14015 PF01292 Prokaryotic cytochrome b561 SH05_RS14030 PF06167 Glucose-regulated metallo-peptidase M90 SH05_RS14040 PF11924 Inverse autotransporter, beta-domain SH05_RS14040 PF02369 Bacterial Ig-like domain (group 1) SH05_RS14040 PF09134 Invasin, domain 3 SH05_RS14050 PF00083 Sugar (and other) transporter SH05_RS14050 PF07690 Major Facilitator Superfamily SH05_RS14055 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus SH05_RS14055 PF01048 Phosphorylase superfamily SH05_RS14060 PF01709 Transcriptional regulator SH05_RS14070 PF01554 MatE SH05_RS14080 PF03466 LysR substrate binding domain SH05_RS14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS14085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS14085 PF03466 LysR substrate binding domain SH05_RS14095 PF17969 L,D-transpeptidase C-terminal domain SH05_RS14095 PF03734 L,D-transpeptidase catalytic domain SH05_RS14100 PF02277 Phosphoribosyltransferase SH05_RS14105 PF02654 Cobalamin-5-phosphate synthase SH05_RS14110 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SH05_RS14120 PF05598 Transposase domain (DUF772) SH05_RS14120 PF01609 Transposase DDE domain SH05_RS14130 PF13276 HTH-like domain SH05_RS14130 PF00665 Integrase core domain SH05_RS14135 PF01527 Transposase SH05_RS14140 PF00593 TonB dependent receptor SH05_RS14140 PF07715 TonB-dependent Receptor Plug Domain SH05_RS14150 PF03797 Autotransporter beta-domain SH05_RS14150 PF13018 Extended Signal Peptide of Type V secretion system SH05_RS14150 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH05_RS14165 PF06174 Protein of unknown function (DUF987) SH05_RS14170 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH05_RS14175 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH05_RS14190 PF10662 Ethanolamine utilisation - propanediol utilisation SH05_RS14195 PF04363 Protein of unknown function (DUF496) SH05_RS14200 PF04632 Fusaric acid resistance protein family SH05_RS14205 PF06445 GyrI-like small molecule binding domain SH05_RS14210 PF07943 Penicillin-binding protein 5, C-terminal domain SH05_RS14210 PF00768 D-alanyl-D-alanine carboxypeptidase SH05_RS14215 PF00929 Exonuclease SH05_RS14215 PF08411 Exonuclease C-terminal SH05_RS14220 PF01206 Sulfurtransferase TusA SH05_RS14225 PF04143 Sulphur transport SH05_RS14230 PF13520 Amino acid permease SH05_RS14235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS14235 PF03466 LysR substrate binding domain SH05_RS14240 PF01370 NAD dependent epimerase/dehydratase family SH05_RS14245 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SH05_RS14250 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SH05_RS14255 PF01634 ATP phosphoribosyltransferase SH05_RS14255 PF08029 HisG, C-terminal domain SH05_RS14260 PF00815 Histidinol dehydrogenase SH05_RS14265 PF00155 Aminotransferase class I and II SH05_RS14270 PF08645 Polynucleotide kinase 3 phosphatase SH05_RS14270 PF00475 Imidazoleglycerol-phosphate dehydratase SH05_RS14275 PF00117 Glutamine amidotransferase class-I SH05_RS14280 PF00977 Histidine biosynthesis protein SH05_RS14285 PF00977 Histidine biosynthesis protein SH05_RS14290 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SH05_RS14290 PF01502 Phosphoribosyl-AMP cyclohydrolase SH05_RS14295 PF02706 Chain length determinant protein SH05_RS14300 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH05_RS14300 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH05_RS14300 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH05_RS14305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH05_RS14305 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SH05_RS14310 PF01609 Transposase DDE domain SH05_RS14310 PF05598 Transposase domain (DUF772) SH05_RS14320 PF00534 Glycosyl transferases group 1 SH05_RS14325 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS14340 PF03275 UDP-galactopyranose mutase SH05_RS14345 PF01943 Polysaccharide biosynthesis protein SH05_RS14350 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SH05_RS14355 PF00483 Nucleotidyl transferase SH05_RS14365 PF16363 GDP-mannose 4,6 dehydratase SH05_RS14370 PF00483 Nucleotidyl transferase SH05_RS14380 PF13439 Glycosyltransferase Family 4 SH05_RS14380 PF00534 Glycosyl transferases group 1 SH05_RS14385 PF04230 Polysaccharide pyruvyl transferase SH05_RS14395 PF02397 Bacterial sugar transferase SH05_RS14400 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH05_RS14400 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH05_RS14400 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH05_RS14400 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH05_RS14405 PF00483 Nucleotidyl transferase SH05_RS14405 PF01050 Mannose-6-phosphate isomerase SH05_RS14410 PF13579 Glycosyl transferase 4-like domain SH05_RS14410 PF00534 Glycosyl transferases group 1 SH05_RS14415 PF00293 NUDIX domain SH05_RS14420 PF01370 NAD dependent epimerase/dehydratase family SH05_RS14425 PF16363 GDP-mannose 4,6 dehydratase SH05_RS14430 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS14435 PF00535 Glycosyl transferase family 2 SH05_RS14445 PF13439 Glycosyltransferase Family 4 SH05_RS14445 PF00534 Glycosyl transferases group 1 SH05_RS14450 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS14455 PF00535 Glycosyl transferase family 2 SH05_RS14460 PF13614 AAA domain SH05_RS14460 PF02706 Chain length determinant protein SH05_RS14460 PF13807 G-rich domain on putative tyrosine kinase SH05_RS14465 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH05_RS14470 PF02563 Polysaccharide biosynthesis/export protein SH05_RS14470 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH05_RS14470 PF10531 SLBB domain SH05_RS14475 PF03741 Integral membrane protein TerC family SH05_RS14475 PF03471 Transporter associated domain SH05_RS14475 PF00571 CBS domain SH05_RS14480 PF05170 AsmA family SH05_RS14485 PF00692 dUTPase SH05_RS14490 PF00485 Phosphoribulokinase / Uridine kinase family SH05_RS14495 PF08447 PAS fold SH05_RS14495 PF00563 EAL domain SH05_RS14495 PF13426 PAS domain SH05_RS14495 PF08448 PAS fold SH05_RS14495 PF05231 MASE1 SH05_RS14495 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS14500 PF06029 AlkA N-terminal domain SH05_RS14500 PF00730 HhH-GPD superfamily base excision DNA repair protein SH05_RS14510 PF00012 Hsp70 protein SH05_RS14520 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) SH05_RS14530 PF00092 von Willebrand factor type A domain SH05_RS14535 PF13533 Biotin-lipoyl like SH05_RS14540 PF00873 AcrB/AcrD/AcrF family SH05_RS14545 PF00873 AcrB/AcrD/AcrF family SH05_RS14550 PF07690 Major Facilitator Superfamily SH05_RS14555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS14555 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS14555 PF00672 HAMP domain SH05_RS14560 PF00072 Response regulator receiver domain SH05_RS14560 PF00486 Transcriptional regulatory protein, C terminal SH05_RS14565 PF07411 Domain of unknown function (DUF1508) SH05_RS14570 PF01136 Peptidase family U32 SH05_RS14570 PF16325 Peptidase family U32 C-terminal domain SH05_RS14590 PF00781 Diacylglycerol kinase catalytic domain SH05_RS14600 PF01527 Transposase SH05_RS14605 PF13333 Integrase core domain SH05_RS14605 PF13276 HTH-like domain SH05_RS14605 PF00665 Integrase core domain SH05_RS14610 PF08220 DeoR-like helix-turn-helix domain SH05_RS14615 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS14615 PF00107 Zinc-binding dehydrogenase SH05_RS14620 PF03611 PTS system sugar-specific permease component SH05_RS14625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS14630 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS14635 PF08013 Tagatose 6 phosphate kinase SH05_RS14640 PF01116 Fructose-bisphosphate aldolase class-II SH05_RS14645 PF01791 DeoC/LacD family aldolase SH05_RS14650 PF03825 Nucleoside H+ symporter SH05_RS14655 PF03747 ADP-ribosylglycohydrolase SH05_RS14660 PF00294 pfkB family carbohydrate kinase SH05_RS14665 PF00392 Bacterial regulatory proteins, gntR family SH05_RS14665 PF07702 UTRA domain SH05_RS14670 PF01183 Glycosyl hydrolases family 25 SH05_RS14675 PF08543 Phosphomethylpyrimidine kinase SH05_RS14680 PF02110 Hydroxyethylthiazole kinase family SH05_RS14685 PF02583 Metal-sensitive transcriptional repressor SH05_RS14690 PF03824 High-affinity nickel-transport protein SH05_RS14695 PF11776 Nickel/cobalt transporter regulator SH05_RS14700 PF00419 Fimbrial protein SH05_RS14705 PF13953 PapC C-terminal domain SH05_RS14705 PF13954 PapC N-terminal domain SH05_RS14705 PF00577 Outer membrane usher protein SH05_RS14710 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS14710 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS14715 PF00419 Fimbrial protein SH05_RS14725 PF10836 Protein of unknown function (DUF2574) SH05_RS14730 PF10609 NUBPL iron-transfer P-loop NTPase SH05_RS14735 PF09334 tRNA synthetases class I (M) SH05_RS14735 PF01588 Putative tRNA binding domain SH05_RS14740 PF05406 WGR domain SH05_RS14750 PF13569 Domain of unknown function (DUF4132) SH05_RS14760 PF07728 AAA domain (dynein-related subfamily) SH05_RS14770 PF05762 VWA domain containing CoxE-like protein SH05_RS14775 PF04434 SWIM zinc finger SH05_RS14780 PF06998 Protein of unknown function (DUF1307) SH05_RS14785 PF07308 Protein of unknown function (DUF1456) SH05_RS14790 PF04397 LytTr DNA-binding domain SH05_RS14790 PF00072 Response regulator receiver domain SH05_RS14795 PF06580 Histidine kinase SH05_RS14795 PF07694 5TMR of 5TMR-LYT SH05_RS14800 PF13411 MerR HTH family regulatory protein SH05_RS14810 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS14815 PF00005 ABC transporter SH05_RS14820 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS14825 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH05_RS14830 PF14310 Fibronectin type III-like domain SH05_RS14830 PF01915 Glycosyl hydrolase family 3 C-terminal domain SH05_RS14830 PF00933 Glycosyl hydrolase family 3 N terminal domain SH05_RS14835 PF01565 FAD binding domain SH05_RS14835 PF09330 D-lactate dehydrogenase, membrane binding SH05_RS14840 PF00768 D-alanyl-D-alanine carboxypeptidase SH05_RS14845 PF04893 Yip1 domain SH05_RS14850 PF09335 SNARE associated Golgi protein SH05_RS14870 PF01207 Dihydrouridine synthase (Dus) SH05_RS14875 PF03788 LrgA family SH05_RS14880 PF04172 LrgB-like family SH05_RS14885 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH05_RS14885 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region SH05_RS14890 PF02698 DUF218 domain SH05_RS14895 PF10808 Protein of unknown function (DUF2542) SH05_RS14900 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS14900 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH05_RS14905 PF01180 Dihydroorotate dehydrogenase SH05_RS14910 PF02653 Branched-chain amino acid transport system / permease component SH05_RS14915 PF03400 IS1 transposase SH05_RS14920 PF00005 ABC transporter SH05_RS14925 PF13407 Periplasmic binding protein domain SH05_RS14930 PF00356 Bacterial regulatory proteins, lacI family SH05_RS14940 PF04235 Protein of unknown function (DUF418) SH05_RS14945 PF01227 GTP cyclohydrolase I SH05_RS14955 PF00756 Putative esterase SH05_RS14960 PF00593 TonB dependent receptor SH05_RS14960 PF07715 TonB-dependent Receptor Plug Domain SH05_RS14965 PF00324 Amino acid permease SH05_RS14970 PF03466 LysR substrate binding domain SH05_RS14970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS14975 PF03601 Conserved hypothetical protein 698 SH05_RS14980 PF01261 Xylose isomerase-like TIM barrel SH05_RS14985 PF00294 pfkB family carbohydrate kinase SH05_RS14990 PF01773 Na+ dependent nucleoside transporter N-terminus SH05_RS14990 PF07662 Na+ dependent nucleoside transporter C-terminus SH05_RS14995 PF01156 Inosine-uridine preferring nucleoside hydrolase SH05_RS15000 PF00027 Cyclic nucleotide-binding domain SH05_RS15005 PF01773 Na+ dependent nucleoside transporter N-terminus SH05_RS15005 PF07662 Na+ dependent nucleoside transporter C-terminus SH05_RS15010 PF04227 Indigoidine synthase A like protein SH05_RS15015 PF00294 pfkB family carbohydrate kinase SH05_RS15020 PF02378 Phosphotransferase system, EIIC SH05_RS15020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS15025 PF00294 pfkB family carbohydrate kinase SH05_RS15030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS15030 PF00381 PTS HPr component phosphorylation site SH05_RS15035 PF07690 Major Facilitator Superfamily SH05_RS15040 PF03692 Putative zinc- or iron-chelating domain SH05_RS15045 PF01132 Elongation factor P (EF-P) OB domain SH05_RS15045 PF09285 Elongation factor P, C-terminal SH05_RS15045 PF08207 Elongation factor P (EF-P) KOW-like domain SH05_RS15050 PF08125 Mannitol dehydrogenase C-terminal domain SH05_RS15050 PF01232 Mannitol dehydrogenase Rossmann domain SH05_RS15055 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH05_RS15055 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH05_RS15060 PF01569 PAP2 superfamily SH05_RS15065 PF00877 NlpC/P60 family SH05_RS15070 PF12792 CSS motif domain associated with EAL SH05_RS15070 PF00563 EAL domain SH05_RS15075 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS15080 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS15085 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS15085 PF12911 N-terminal TM domain of oligopeptide transport permease C SH05_RS15090 PF00005 ABC transporter SH05_RS15090 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH05_RS15095 PF13989 YejG-like protein SH05_RS15100 PF07690 Major Facilitator Superfamily SH05_RS15105 PF01479 S4 domain SH05_RS15105 PF00849 RNA pseudouridylate synthase SH05_RS15110 PF04851 Type III restriction enzyme, res subunit SH05_RS15110 PF00271 Helicase conserved C-terminal domain SH05_RS15115 PF01386 Ribosomal L25p family SH05_RS15120 PF04245 37-kD nucleoid-associated bacterial protein SH05_RS15125 PF07208 Protein of unknown function (DUF1414) SH05_RS15130 PF00884 Sulfatase SH05_RS15130 PF11893 Domain of unknown function (DUF3413) SH05_RS15140 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH05_RS15140 PF03797 Autotransporter beta-domain SH05_RS15140 PF03212 Pertactin SH05_RS15145 PF05598 Transposase domain (DUF772) SH05_RS15145 PF01609 Transposase DDE domain SH05_RS15155 PF00196 Bacterial regulatory proteins, luxR family SH05_RS15155 PF00072 Response regulator receiver domain SH05_RS15160 PF03918 Cytochrome C biogenesis protein SH05_RS15165 PF08534 Redoxin SH05_RS15170 PF01578 Cytochrome C assembly protein SH05_RS15170 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH05_RS15175 PF03100 CcmE SH05_RS15180 PF04995 Heme exporter protein D (CcmD) SH05_RS15185 PF01578 Cytochrome C assembly protein SH05_RS15190 PF03379 CcmB protein SH05_RS15195 PF00005 ABC transporter SH05_RS15200 PF03264 NapC/NirT cytochrome c family, N-terminal region SH05_RS15205 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SH05_RS15210 PF12801 4Fe-4S binding domain SH05_RS15210 PF13237 4Fe-4S dicluster domain SH05_RS15215 PF12838 4Fe-4S dicluster domain SH05_RS15215 PF12800 4Fe-4S binding domain SH05_RS15220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS15220 PF00384 Molybdopterin oxidoreductase SH05_RS15220 PF01568 Molydopterin dinucleotide binding domain SH05_RS15225 PF03927 NapD protein SH05_RS15230 PF12800 4Fe-4S binding domain SH05_RS15230 PF00037 4Fe-4S binding domain SH05_RS15230 PF13187 4Fe-4S dicluster domain SH05_RS15240 PF03974 Ecotin SH05_RS15245 PF06039 Malate:quinone oxidoreductase (Mqo) SH05_RS15250 PF00005 ABC transporter SH05_RS15255 PF13532 2OG-Fe(II) oxygenase superfamily SH05_RS15260 PF02805 Metal binding domain of Ada SH05_RS15260 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH05_RS15260 PF12833 Helix-turn-helix domain SH05_RS15260 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH05_RS15265 PF02424 ApbE family SH05_RS15270 PF00267 Gram-negative porin SH05_RS15285 PF01627 Hpt domain SH05_RS15285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS15285 PF16359 RcsD-ABL domain SH05_RS15290 PF00072 Response regulator receiver domain SH05_RS15290 PF00196 Bacterial regulatory proteins, luxR family SH05_RS15295 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS15295 PF09456 RcsC Alpha-Beta-Loop (ABL) SH05_RS15295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS15295 PF00072 Response regulator receiver domain SH05_RS15300 PF00989 PAS fold SH05_RS15300 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS15300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS15305 PF02954 Bacterial regulatory protein, Fis family SH05_RS15305 PF00072 Response regulator receiver domain SH05_RS15305 PF00158 Sigma-54 interaction domain SH05_RS15310 PF01144 Coenzyme A transferase SH05_RS15315 PF01144 Coenzyme A transferase SH05_RS15320 PF02667 Short chain fatty acid transporter SH05_RS15325 PF00108 Thiolase, N-terminal domain SH05_RS15325 PF02803 Thiolase, C-terminal domain SH05_RS15330 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) SH05_RS15335 PF08486 Stage II sporulation protein SH05_RS15335 PF10062 Predicted secreted protein (DUF2300) SH05_RS15340 PF01835 MG2 domain SH05_RS15340 PF07703 Alpha-2-macroglobulin bait region domain SH05_RS15340 PF00207 Alpha-2-macroglobulin family SH05_RS15345 PF07703 Alpha-2-macroglobulin bait region domain SH05_RS15345 PF00207 Alpha-2-macroglobulin family SH05_RS15345 PF01835 MG2 domain SH05_RS15350 PF06672 Protein of unknown function (DUF1175) SH05_RS15355 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) SH05_RS15360 PF00521 DNA gyrase/topoisomerase IV, subunit A SH05_RS15360 PF03989 DNA gyrase C-terminal domain, beta-propeller SH05_RS15370 PF03797 Autotransporter beta-domain SH05_RS15370 PF12951 Passenger-associated-transport-repeat SH05_RS15370 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat SH05_RS15380 PF00317 Ribonucleotide reductase, all-alpha domain SH05_RS15380 PF02867 Ribonucleotide reductase, barrel domain SH05_RS15380 PF03477 ATP cone domain SH05_RS15385 PF00268 Ribonucleotide reductase, small chain SH05_RS15390 PF00111 2Fe-2S iron-sulfur cluster binding domain SH05_RS15405 PF03009 Glycerophosphoryl diester phosphodiesterase family SH05_RS15410 PF07690 Major Facilitator Superfamily SH05_RS15415 PF04324 BFD-like [2Fe-2S] binding domain SH05_RS15415 PF01266 FAD dependent oxidoreductase SH05_RS15420 PF00890 FAD binding domain SH05_RS15425 PF02754 Cysteine-rich domain SH05_RS15425 PF13183 4Fe-4S dicluster domain SH05_RS15430 PF04754 Putative transposase, YhgA-like SH05_RS15440 PF03328 HpcH/HpaI aldolase/citrate lyase family SH05_RS15445 PF07690 Major Facilitator Superfamily SH05_RS15455 PF09339 IclR helix-turn-helix domain SH05_RS15455 PF01614 Bacterial transcriptional regulator SH05_RS15460 PF00994 Probable molybdopterin binding domain SH05_RS15465 PF07437 YfaZ precursor SH05_RS15470 PF00293 NUDIX domain SH05_RS15475 PF00300 Histidine phosphatase superfamily (branch 1) SH05_RS15480 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH05_RS15485 PF00535 Glycosyl transferase family 2 SH05_RS15490 PF02911 Formyl transferase, C-terminal domain SH05_RS15490 PF01370 NAD dependent epimerase/dehydratase family SH05_RS15490 PF00551 Formyl transferase SH05_RS15495 PF01522 Polysaccharide deacetylase SH05_RS15500 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SH05_RS15505 PF00892 EamA-like transporter family SH05_RS15520 PF13193 AMP-binding enzyme C-terminal domain SH05_RS15520 PF00501 AMP-binding enzyme SH05_RS15525 PF13378 Enolase C-terminal domain-like SH05_RS15530 PF00378 Enoyl-CoA hydratase/isomerase SH05_RS15535 PF12697 Alpha/beta hydrolase family SH05_RS15540 PF16582 Middle domain of thiamine pyrophosphate SH05_RS15540 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH05_RS15540 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH05_RS15545 PF00425 chorismate binding enzyme SH05_RS15550 PF05957 Bacterial protein of unknown function (DUF883) SH05_RS15555 PF13673 Acetyltransferase (GNAT) domain SH05_RS15560 PF12706 Beta-lactamase superfamily domain SH05_RS15565 PF02902 Ulp1 protease family, C-terminal catalytic domain SH05_RS15570 PF12450 von Willebrand factor SH05_RS15570 PF00092 von Willebrand factor type A domain SH05_RS15570 PF12034 Domain of unknown function (DUF3520) SH05_RS15575 PF04389 Peptidase family M28 SH05_RS15580 PF08974 Domain of unknown function (DUF1877) SH05_RS15600 PF00361 Proton-conducting membrane transporter SH05_RS15605 PF00361 Proton-conducting membrane transporter SH05_RS15610 PF00361 Proton-conducting membrane transporter SH05_RS15610 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH05_RS15615 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH05_RS15620 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SH05_RS15625 PF12838 4Fe-4S dicluster domain SH05_RS15630 PF00146 NADH dehydrogenase SH05_RS15635 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH05_RS15635 PF01568 Molydopterin dinucleotide binding domain SH05_RS15635 PF00384 Molybdopterin oxidoreductase SH05_RS15635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS15640 PF10531 SLBB domain SH05_RS15640 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH05_RS15640 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH05_RS15650 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH05_RS15650 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH05_RS15655 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH05_RS15660 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SH05_RS15665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS15665 PF03466 LysR substrate binding domain SH05_RS15670 PF00155 Aminotransferase class I and II SH05_RS15680 PF02080 TrkA-C domain SH05_RS15680 PF03600 Citrate transporter SH05_RS15685 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS15690 PF03887 YfbU domain SH05_RS15695 PF04217 Protein of unknown function, DUF412 SH05_RS15705 PF00871 Acetokinase family SH05_RS15710 PF07085 DRTGG domain SH05_RS15710 PF01515 Phosphate acetyl/butaryl transferase SH05_RS15715 PF03606 C4-dicarboxylate anaerobic carrier SH05_RS15720 PF00293 NUDIX domain SH05_RS15725 PF12850 Calcineurin-like phosphoesterase superfamily domain SH05_RS15730 PF14834 Glutathione S-transferase, C-terminal domain SH05_RS15730 PF02798 Glutathione S-transferase, N-terminal domain SH05_RS15735 PF00043 Glutathione S-transferase, C-terminal domain SH05_RS15735 PF02798 Glutathione S-transferase, N-terminal domain SH05_RS15740 PF02152 Dihydroneopterin aldolase SH05_RS15745 PF01370 NAD dependent epimerase/dehydratase family SH05_RS15745 PF08338 Domain of unknown function (DUF1731) SH05_RS15750 PF04754 Putative transposase, YhgA-like SH05_RS15755 PF00005 ABC transporter SH05_RS15760 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS15765 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS15770 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS15775 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS15780 PF02441 Flavoprotein SH05_RS15785 PF00156 Phosphoribosyl transferase domain SH05_RS15790 PF02674 Colicin V production protein SH05_RS15795 PF05036 Sporulation related domain SH05_RS15800 PF08245 Mur ligase middle domain SH05_RS15800 PF02875 Mur ligase family, glutamate ligase domain SH05_RS15805 PF17848 Acetyl-coA carboxylase zinc finger domain SH05_RS15805 PF01039 Carboxyl transferase domain SH05_RS15810 PF09335 SNARE associated Golgi protein SH05_RS15815 PF01416 tRNA pseudouridine synthase SH05_RS15820 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH05_RS15820 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH05_RS15825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH05_RS15825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH05_RS15825 PF11890 Domain of unknown function (DUF3410) SH05_RS15835 PF07690 Major Facilitator Superfamily SH05_RS15840 PF02801 Beta-ketoacyl synthase, C-terminal domain SH05_RS15840 PF00109 Beta-ketoacyl synthase, N-terminal domain SH05_RS15845 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SH05_RS15845 PF01266 FAD dependent oxidoreductase SH05_RS15850 PF08891 YfcL protein SH05_RS15855 PF04315 Elongation factor P hydroxylase SH05_RS15860 PF01925 Sulfite exporter TauE/SafE SH05_RS15865 PF03411 Penicillin-insensitive murein endopeptidase SH05_RS15870 PF01264 Chorismate synthase SH05_RS15875 PF05175 Methyltransferase small domain SH05_RS15880 PF01713 Smr domain SH05_RS15885 PF11245 Protein of unknown function (DUF2544) SH05_RS15890 PF00419 Fimbrial protein SH05_RS15895 PF00419 Fimbrial protein SH05_RS15900 PF00419 Fimbrial protein SH05_RS15905 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS15905 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS15915 PF00419 Fimbrial protein SH05_RS15920 PF00300 Histidine phosphatase superfamily (branch 1) SH05_RS15925 PF00378 Enoyl-CoA hydratase/isomerase SH05_RS15925 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH05_RS15925 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH05_RS15930 PF02803 Thiolase, C-terminal domain SH05_RS15930 PF00108 Thiolase, N-terminal domain SH05_RS15935 PF04175 Protein of unknown function (DUF406) SH05_RS15940 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SH05_RS15950 PF04333 MlaA lipoprotein SH05_RS15955 PF01226 Formate/nitrite transporter SH05_RS15965 PF14659 Phage integrase, N-terminal SAM-like domain SH05_RS15965 PF13356 Arm DNA-binding domain SH05_RS15965 PF00589 Phage integrase family SH05_RS15970 PF04138 GtrA-like protein SH05_RS15975 PF00535 Glycosyl transferase family 2 SH05_RS15985 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH05_RS15990 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH05_RS16000 PF05869 DNA N-6-adenine-methyltransferase (Dam) SH05_RS16005 PF06069 PerC transcriptional activator SH05_RS16025 PF10065 Uncharacterized conserved protein (DUF2303) SH05_RS16050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS16050 PF03466 LysR substrate binding domain SH05_RS16055 PF02447 GntP family permease SH05_RS16060 PF00291 Pyridoxal-phosphate dependent enzyme SH05_RS16065 PF07690 Major Facilitator Superfamily SH05_RS16070 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS16070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS16075 PF00072 Response regulator receiver domain SH05_RS16075 PF00196 Bacterial regulatory proteins, luxR family SH05_RS16080 PF01627 Hpt domain SH05_RS16080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS16080 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS16080 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS16080 PF00072 Response regulator receiver domain SH05_RS16085 PF02515 CoA-transferase family III SH05_RS16090 PF03547 Membrane transport protein SH05_RS16095 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH05_RS16095 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH05_RS16095 PF00205 Thiamine pyrophosphate enzyme, central domain SH05_RS16100 PF02515 CoA-transferase family III SH05_RS16105 PF10938 YfdX protein SH05_RS16120 PF10810 Protein of unknown function (DUF2545) SH05_RS16125 PF03279 Bacterial lipid A biosynthesis acyltransferase SH05_RS16130 PF00155 Aminotransferase class I and II SH05_RS16135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS16135 PF07694 5TMR of 5TMR-LYT SH05_RS16135 PF06580 Histidine kinase SH05_RS16140 PF04397 LytTr DNA-binding domain SH05_RS16140 PF00072 Response regulator receiver domain SH05_RS16145 PF12833 Helix-turn-helix domain SH05_RS16150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS16150 PF00391 PEP-utilising enzyme, mobile domain SH05_RS16150 PF00381 PTS HPr component phosphorylation site SH05_RS16150 PF02896 PEP-utilising enzyme, TIM barrel domain SH05_RS16150 PF05524 PEP-utilising enzyme, N-terminal SH05_RS16155 PF05343 M42 glutamyl aminopeptidase SH05_RS16160 PF00557 Metallopeptidase family M24 SH05_RS16160 PF01321 Creatinase/Prolidase N-terminal domain SH05_RS16165 PF02378 Phosphotransferase system, EIIC SH05_RS16170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS16175 PF02685 Glucokinase SH05_RS16180 PF00654 Voltage gated chloride channel SH05_RS16185 PF10697 Protein of unknown function (DUF2502) SH05_RS16195 PF01566 Natural resistance-associated macrophage protein SH05_RS16200 PF01773 Na+ dependent nucleoside transporter N-terminus SH05_RS16200 PF07670 Nucleoside recognition SH05_RS16200 PF07662 Na+ dependent nucleoside transporter C-terminus SH05_RS16205 PF01609 Transposase DDE domain SH05_RS16210 PF05231 MASE1 SH05_RS16210 PF00563 EAL domain SH05_RS16225 PF07037 Putative transcription regulator (DUF1323) SH05_RS16230 PF07037 Putative transcription regulator (DUF1323) SH05_RS16235 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH05_RS16260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS16260 PF03466 LysR substrate binding domain SH05_RS16270 PF03825 Nucleoside H+ symporter SH05_RS16275 PF01048 Phosphorylase superfamily SH05_RS16280 PF03502 Nucleoside-specific channel-forming protein, Tsx SH05_RS16285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS16285 PF03466 LysR substrate binding domain SH05_RS16290 PF13593 SBF-like CPA transporter family (DUF4137) SH05_RS16295 PF12843 Putative quorum-sensing-regulated virulence factor SH05_RS16300 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SH05_RS16300 PF01653 NAD-dependent DNA ligase adenylation domain SH05_RS16300 PF12826 Helix-hairpin-helix motif SH05_RS16300 PF03120 NAD-dependent DNA ligase OB-fold domain SH05_RS16300 PF00533 BRCA1 C Terminus (BRCT) domain SH05_RS16305 PF04354 ZipA, C-terminal FtsZ-binding domain SH05_RS16315 PF00291 Pyridoxal-phosphate dependent enzyme SH05_RS16320 PF00381 PTS HPr component phosphorylation site SH05_RS16325 PF05524 PEP-utilising enzyme, N-terminal SH05_RS16325 PF00391 PEP-utilising enzyme, mobile domain SH05_RS16325 PF02896 PEP-utilising enzyme, TIM barrel domain SH05_RS16330 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH05_RS16335 PF08543 Phosphomethylpyrimidine kinase SH05_RS16340 PF17263 Family of unknown function (DUF5329) SH05_RS16345 PF05406 WGR domain SH05_RS16350 PF00291 Pyridoxal-phosphate dependent enzyme SH05_RS16355 PF00005 ABC transporter SH05_RS16360 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS16365 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS16380 PF01418 Helix-turn-helix domain, rpiR family SH05_RS16380 PF01380 SIS domain SH05_RS16385 PF01380 SIS domain SH05_RS16390 PF02378 Phosphotransferase system, EIIC SH05_RS16390 PF00367 phosphotransferase system, EIIB SH05_RS16395 PF00144 Beta-lactamase SH05_RS16400 PF04261 Dyp-type peroxidase family SH05_RS16405 PF06572 Protein of unknown function (DUF1131) SH05_RS16410 PF11143 Protein of unknown function (DUF2919) SH05_RS16415 PF00583 Acetyltransferase (GNAT) family SH05_RS16420 PF01520 N-acetylmuramoyl-L-alanine amidase SH05_RS16425 PF01218 Coproporphyrinogen III oxidase SH05_RS16430 PF12833 Helix-turn-helix domain SH05_RS16435 PF00936 BMC domain SH05_RS16435 PF16365 Ethanolamine utilization protein EutK C-terminus SH05_RS16440 PF00936 BMC domain SH05_RS16445 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SH05_RS16450 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SH05_RS16455 PF06277 Ethanolamine utilisation protein EutA SH05_RS16460 PF04346 Ethanolamine utilisation protein, EutH SH05_RS16465 PF00465 Iron-containing alcohol dehydrogenase SH05_RS16475 PF00171 Aldehyde dehydrogenase family SH05_RS16480 PF03319 Ethanolamine utilisation protein EutN/carboxysome SH05_RS16485 PF00936 BMC domain SH05_RS16490 PF01515 Phosphate acetyl/butaryl transferase SH05_RS16495 PF01923 Cobalamin adenosyltransferase SH05_RS16500 PF06249 Ethanolamine utilisation protein EutQ SH05_RS16505 PF10662 Ethanolamine utilisation - propanediol utilisation SH05_RS16510 PF00936 BMC domain SH05_RS16515 PF03949 Malic enzyme, NAD binding domain SH05_RS16515 PF00390 Malic enzyme, N-terminal domain SH05_RS16515 PF01515 Phosphate acetyl/butaryl transferase SH05_RS16520 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH05_RS16525 PF02779 Transketolase, pyrimidine binding domain SH05_RS16525 PF02780 Transketolase, C-terminal domain SH05_RS16525 PF00456 Transketolase, thiamine diphosphate binding domain SH05_RS16530 PF06674 Protein of unknown function (DUF1176) SH05_RS16535 PF00293 NUDIX domain SH05_RS16540 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS16540 PF13247 4Fe-4S dicluster domain SH05_RS16540 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH05_RS16545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS16545 PF07730 Histidine kinase SH05_RS16545 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH05_RS16545 PF00672 HAMP domain SH05_RS16550 PF00873 AcrB/AcrD/AcrF family SH05_RS16560 PF03960 ArsC family SH05_RS16565 PF01546 Peptidase family M20/M25/M40 SH05_RS16565 PF07687 Peptidase dimerisation domain SH05_RS16570 PF13980 Uncharacterised protein family (UPF0370) SH05_RS16575 PF02230 Phospholipase/Carboxylesterase SH05_RS16580 PF13718 GNAT acetyltransferase 2 SH05_RS16580 PF08351 Domain of unknown function (DUF1726) SH05_RS16580 PF05127 Helicase SH05_RS16580 PF17176 tRNA-binding domain SH05_RS16585 PF04228 Putative neutral zinc metallopeptidase SH05_RS16590 PF01259 SAICAR synthetase SH05_RS16600 PF06804 NlpB/DapX lipoprotein SH05_RS16605 PF00701 Dihydrodipicolinate synthetase family SH05_RS16610 PF01842 ACT domain SH05_RS16615 PF00578 AhpC/TSA family SH05_RS16620 PF00037 4Fe-4S binding domain SH05_RS16620 PF12798 4Fe-4S binding domain SH05_RS16625 PF00361 Proton-conducting membrane transporter SH05_RS16630 PF00146 NADH dehydrogenase SH05_RS16635 PF00361 Proton-conducting membrane transporter SH05_RS16635 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH05_RS16640 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH05_RS16645 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH05_RS16645 PF00361 Proton-conducting membrane transporter SH05_RS16650 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH05_RS16650 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH05_RS16650 PF00374 Nickel-dependent hydrogenase SH05_RS16655 PF12838 4Fe-4S dicluster domain SH05_RS16660 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH05_RS16665 PF07450 Formate hydrogenlyase maturation protein HycH SH05_RS16670 PF01590 GAF domain SH05_RS16670 PF00158 Sigma-54 interaction domain SH05_RS16675 PF01226 Formate/nitrite transporter SH05_RS16680 PF01594 AI-2E family transporter SH05_RS16685 PF01435 Peptidase family M48 SH05_RS16690 PF03960 ArsC family SH05_RS16695 PF00308 Bacterial dnaA protein SH05_RS16700 PF00860 Permease family SH05_RS16710 PF00586 AIR synthase related protein, N-terminal domain SH05_RS16710 PF02769 AIR synthase related protein, C-terminal domain SH05_RS16715 PF00551 Formyl transferase SH05_RS16720 PF13090 Polyphosphate kinase C-terminal domain 2 SH05_RS16720 PF02503 Polyphosphate kinase middle domain SH05_RS16720 PF13089 Polyphosphate kinase N-terminal domain SH05_RS16720 PF17941 Polyphosphate kinase C-terminal domain 1 SH05_RS16725 PF02541 Ppx/GppA phosphatase family SH05_RS16730 PF00563 EAL domain SH05_RS16730 PF05231 MASE1 SH05_RS16740 PF11119 Protein of unknown function (DUF2633) SH05_RS16745 PF05433 Glycine zipper 2TM domain SH05_RS16750 PF17358 Family of unknown function (DUF5384) SH05_RS16755 PF00958 GMP synthase C terminal domain SH05_RS16755 PF00117 Glutamine amidotransferase class-I SH05_RS16755 PF02540 NAD synthase SH05_RS16760 PF00571 CBS domain SH05_RS16760 PF00478 IMP dehydrogenase / GMP reductase domain SH05_RS16765 PF02601 Exonuclease VII, large subunit SH05_RS16765 PF13742 OB-fold nucleic acid binding domain SH05_RS16770 PF07191 zinc-ribbons SH05_RS16775 PF01926 50S ribosome-binding GTPase SH05_RS16775 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SH05_RS16780 PF13360 PQQ-like domain SH05_RS16785 PF09976 Tetratricopeptide repeat-like domain SH05_RS16790 PF03129 Anticodon binding domain SH05_RS16790 PF13393 Histidyl-tRNA synthetase SH05_RS16795 PF04551 GcpE protein SH05_RS16800 PF13464 Domain of unknown function (DUF4115) SH05_RS16805 PF04055 Radical SAM superfamily SH05_RS16810 PF00334 Nucleoside diphosphate kinase SH05_RS16815 PF00912 Transglycosylase SH05_RS16815 PF00905 Penicillin binding protein transpeptidase domain SH05_RS16815 PF06832 Penicillin-Binding Protein C-terminus Family SH05_RS16820 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SH05_RS16820 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SH05_RS16820 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SH05_RS16820 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SH05_RS16820 PF17962 Bacterial macroglobulin domain 6 SH05_RS16820 PF01835 MG2 domain SH05_RS16820 PF00207 Alpha-2-macroglobulin family SH05_RS16820 PF07703 Alpha-2-macroglobulin bait region domain SH05_RS16820 PF07678 A-macroglobulin TED domain SH05_RS16825 PF00581 Rhodanese-like domain SH05_RS16830 PF14581 SseB protein C-terminal domain SH05_RS16830 PF07179 SseB protein N-terminal domain SH05_RS16835 PF12404 Peptidase SH05_RS16835 PF00883 Cytosol aminopeptidase family, catalytic domain SH05_RS16840 PF04384 Iron-sulphur cluster assembly SH05_RS16845 PF00111 2Fe-2S iron-sulfur cluster binding domain SH05_RS16850 PF00012 Hsp70 protein SH05_RS16855 PF07743 HSCB C-terminal oligomerisation domain SH05_RS16860 PF01521 Iron-sulphur cluster biosynthesis SH05_RS16865 PF01592 NifU-like N terminal domain SH05_RS16870 PF00266 Aminotransferase class-V SH05_RS16875 PF02082 Transcriptional regulator SH05_RS16880 PF00588 SpoU rRNA Methylase family SH05_RS16885 PF00459 Inositol monophosphatase family SH05_RS16890 PF12146 Serine aminopeptidase, S33 SH05_RS16895 PF00874 PRD domain SH05_RS16900 PF12832 MFS_1 like family SH05_RS16905 PF03466 LysR substrate binding domain SH05_RS16905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS16910 PF00355 Rieske [2Fe-2S] domain SH05_RS16910 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH05_RS16915 PF00866 Ring hydroxylating beta subunit SH05_RS16920 PF00355 Rieske [2Fe-2S] domain SH05_RS16925 PF00106 short chain dehydrogenase SH05_RS16930 PF14759 Reductase C-terminal SH05_RS16930 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS16935 PF07681 DoxX SH05_RS16940 PF01263 Aldose 1-epimerase SH05_RS16945 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS16945 PF00107 Zinc-binding dehydrogenase SH05_RS16950 PF02653 Branched-chain amino acid transport system / permease component SH05_RS16955 PF00005 ABC transporter SH05_RS16960 PF13407 Periplasmic binding protein domain SH05_RS16965 PF13181 Tetratricopeptide repeat SH05_RS16965 PF17128 Domain of unknown function (DUF5107) SH05_RS16970 PF00480 ROK family SH05_RS16975 PF00464 Serine hydroxymethyltransferase SH05_RS16980 PF00970 Oxidoreductase FAD-binding domain SH05_RS16980 PF00175 Oxidoreductase NAD-binding domain SH05_RS16980 PF00042 Globin SH05_RS16985 PF00543 Nitrogen regulatory protein P-II SH05_RS16990 PF00158 Sigma-54 interaction domain SH05_RS16990 PF00072 Response regulator receiver domain SH05_RS16995 PF13942 YfhG lipoprotein SH05_RS17000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS17000 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS17005 PF02769 AIR synthase related protein, C-terminal domain SH05_RS17005 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SH05_RS17005 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SH05_RS17010 PF01464 Transglycosylase SLT domain SH05_RS17010 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS17015 PF14437 MafB19-like deaminase SH05_RS17025 PF01380 SIS domain SH05_RS17025 PF01418 Helix-turn-helix domain, rpiR family SH05_RS17030 PF12838 4Fe-4S dicluster domain SH05_RS17050 PF01648 4'-phosphopantetheinyl transferase superfamily SH05_RS17055 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SH05_RS17060 PF11967 Recombination protein O N terminal SH05_RS17060 PF02565 Recombination protein O C terminal SH05_RS17065 PF01926 50S ribosome-binding GTPase SH05_RS17065 PF07650 KH domain SH05_RS17070 PF14622 Ribonuclease-III-like SH05_RS17070 PF00035 Double-stranded RNA binding motif SH05_RS17075 PF10502 Signal peptidase, peptidase S26 SH05_RS17080 PF06421 GTP-binding protein LepA C-terminus SH05_RS17080 PF03144 Elongation factor Tu domain 2 SH05_RS17080 PF00009 Elongation factor Tu GTP binding domain SH05_RS17080 PF00679 Elongation factor G C-terminus SH05_RS17090 PF17188 MucB/RseB C-terminal domain SH05_RS17090 PF03888 MucB/RseB N-terminal domain SH05_RS17095 PF03873 Anti sigma-E protein RseA, C-terminal domain SH05_RS17095 PF03872 Anti sigma-E protein RseA, N-terminal domain SH05_RS17100 PF04542 Sigma-70 region 2 SH05_RS17100 PF08281 Sigma-70, region 4 SH05_RS17110 PF02910 Fumarate reductase flavoprotein C-term SH05_RS17110 PF00890 FAD binding domain SH05_RS17115 PF05175 Methyltransferase small domain SH05_RS17120 PF00270 DEAD/DEAH box helicase SH05_RS17120 PF00271 Helicase conserved C-terminal domain SH05_RS17130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS17130 PF03466 LysR substrate binding domain SH05_RS17135 PF01810 LysE type translocator SH05_RS17140 PF01228 Glycine radical SH05_RS17145 PF03167 Uracil DNA glycosylase superfamily SH05_RS17150 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH05_RS17150 PF00588 SpoU rRNA Methylase family SH05_RS17160 PF00085 Thioredoxin SH05_RS17165 PF03942 DTW domain SH05_RS17170 PF13380 CoA binding domain SH05_RS17170 PF13607 Succinyl-CoA ligase like flavodoxin domain SH05_RS17170 PF00583 Acetyltransferase (GNAT) family SH05_RS17175 PF13091 PLD-like domain SH05_RS17180 PF10043 Predicted periplasmic lipoprotein (DUF2279) SH05_RS17185 PF00083 Sugar (and other) transporter SH05_RS17215 PF02861 Clp amino terminal domain, pathogenicity island component SH05_RS17215 PF00004 ATPase family associated with various cellular activities (AAA) SH05_RS17215 PF07724 AAA domain (Cdc48 subfamily) SH05_RS17215 PF17871 AAA lid domain SH05_RS17215 PF10431 C-terminal, D2-small domain, of ClpB protein SH05_RS17220 PF02578 Multi-copper polyphenol oxidoreductase laccase SH05_RS17225 PF01479 S4 domain SH05_RS17225 PF00849 RNA pseudouridylate synthase SH05_RS17230 PF13525 Outer membrane lipoprotein SH05_RS17240 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH05_RS17245 PF00800 Prephenate dehydratase SH05_RS17245 PF01817 Chorismate mutase type II SH05_RS17250 PF01817 Chorismate mutase type II SH05_RS17250 PF02153 Prephenate dehydrogenase SH05_RS17255 PF00793 DAHP synthetase I family SH05_RS17260 PF10973 Protein of unknown function (DUF2799) SH05_RS17265 PF13689 YfiR/HmsC-like SH05_RS17270 PF17152 Periplasmic sensor domain SH05_RS17270 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS17275 PF00691 OmpA family SH05_RS17280 PF01245 Ribosomal protein L19 SH05_RS17285 PF01746 tRNA (Guanine-1)-methyltransferase SH05_RS17290 PF05239 PRC-barrel domain SH05_RS17290 PF01782 RimM N-terminal domain SH05_RS17295 PF00886 Ribosomal protein S16 SH05_RS17300 PF00448 SRP54-type protein, GTPase domain SH05_RS17300 PF02978 Signal peptide binding domain SH05_RS17300 PF02881 SRP54-type protein, helical bundle domain SH05_RS17305 PF01578 Cytochrome C assembly protein SH05_RS17310 PF00571 CBS domain SH05_RS17310 PF01595 Cyclin M transmembrane N-terminal domain SH05_RS17310 PF03471 Transporter associated domain SH05_RS17315 PF01025 GrpE SH05_RS17325 PF01513 ATP-NAD kinase SH05_RS17330 PF02463 RecF/RecN/SMC N terminal domain SH05_RS17335 PF04355 SmpA / OmlA family SH05_RS17340 PF03658 RnfH family Ubiquitin SH05_RS17345 PF03364 Polyketide cyclase / dehydrase and lipid transport SH05_RS17350 PF01668 SmpB protein SH05_RS17355 PF13356 Arm DNA-binding domain SH05_RS17355 PF00589 Phage integrase family SH05_RS17365 PF05930 Prophage CP4-57 regulatory protein (AlpA) SH05_RS17370 PF13148 Protein of unknown function (DUF3987) SH05_RS17380 PF00271 Helicase conserved C-terminal domain SH05_RS17385 PF14130 Domain of unknown function (DUF4297) SH05_RS17385 PF08878 Domain of unknown function (DUF1837) SH05_RS17390 PF07510 Protein of unknown function (DUF1524) SH05_RS17395 PF15935 RNase LS, bacterial toxin SH05_RS17400 PF15933 Antitoxin to bacterial toxin RNase LS or RnlA SH05_RS17405 PF01926 50S ribosome-binding GTPase SH05_RS17410 PF06067 Domain of unknown function (DUF932) SH05_RS17415 PF13280 WYL domain SH05_RS17415 PF08220 DeoR-like helix-turn-helix domain SH05_RS17450 PF03230 Antirestriction protein SH05_RS17455 PF04002 RadC-like JAB domain SH05_RS17460 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH05_RS17465 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH05_RS17485 PF17621 Family of unknown function (DUF5508) SH05_RS17490 PF17612 Family of unknown function (DUF5507) SH05_RS17510 PF00128 Alpha amylase, catalytic domain SH05_RS17515 PF00128 Alpha amylase, catalytic domain SH05_RS17520 PF08943 CsiD SH05_RS17525 PF01266 FAD dependent oxidoreductase SH05_RS17530 PF00171 Aldehyde dehydrogenase family SH05_RS17535 PF00202 Aminotransferase class-III SH05_RS17540 PF00324 Amino acid permease SH05_RS17545 PF07729 FCD domain SH05_RS17545 PF00392 Bacterial regulatory proteins, gntR family SH05_RS17550 PF01476 LysM domain SH05_RS17550 PF04972 BON domain SH05_RS17555 PF01679 Proteolipid membrane potential modulator SH05_RS17560 PF01022 Bacterial regulatory protein, arsR family SH05_RS17565 PF11127 Protein of unknown function (DUF2892) SH05_RS17565 PF00581 Rhodanese-like domain SH05_RS17570 PF00816 H-NS histone family SH05_RS17575 PF06610 L-alanine exporter SH05_RS17580 PF09400 Protein of unknown function (DUF2002) SH05_RS17585 PF05957 Bacterial protein of unknown function (DUF883) SH05_RS17590 PF00462 Glutaredoxin SH05_RS17595 PF07972 NrdI Flavodoxin like SH05_RS17600 PF08343 Ribonucleotide reductase N-terminal SH05_RS17600 PF00317 Ribonucleotide reductase, all-alpha domain SH05_RS17600 PF02867 Ribonucleotide reductase, barrel domain SH05_RS17605 PF00268 Ribonucleotide reductase, small chain SH05_RS17610 PF00571 CBS domain SH05_RS17610 PF00005 ABC transporter SH05_RS17615 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS17620 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH05_RS17630 PF03591 AzlC protein SH05_RS17635 PF05437 Branched-chain amino acid transport protein (AzlD) SH05_RS17640 PF01047 MarR family SH05_RS17645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS17645 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS17650 PF07690 Major Facilitator Superfamily SH05_RS17655 PF02664 S-Ribosylhomocysteinase (LuxS) SH05_RS17660 PF04262 Glutamate-cysteine ligase SH05_RS17665 PF09335 SNARE associated Golgi protein SH05_RS17670 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS17705 PF02599 Global regulator protein family SH05_RS17710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH05_RS17710 PF01411 tRNA synthetases class II (A) SH05_RS17710 PF02272 DHHA1 domain SH05_RS17720 PF02631 RecX family SH05_RS17735 PF00302 Chloramphenicol acetyltransferase SH05_RS17740 PF02464 Competence-damaged protein SH05_RS17745 PF13406 Transglycosylase SLT domain SH05_RS17750 PF03608 PTS system enzyme II sorbitol-specific factor SH05_RS17755 PF03612 Sorbitol phosphotransferase enzyme II N-terminus SH05_RS17755 PF07663 Sorbitol phosphotransferase enzyme II C-terminus SH05_RS17760 PF03829 PTS system glucitol/sorbitol-specific IIA component SH05_RS17765 PF00106 short chain dehydrogenase SH05_RS17770 PF06923 Glucitol operon activator protein (GutM) SH05_RS17775 PF00455 DeoR C terminal sensor domain SH05_RS17775 PF08220 DeoR-like helix-turn-helix domain SH05_RS17780 PF00571 CBS domain SH05_RS17780 PF01380 SIS domain SH05_RS17785 PF01590 GAF domain SH05_RS17785 PF00158 Sigma-54 interaction domain SH05_RS17790 PF00753 Metallo-beta-lactamase superfamily SH05_RS17790 PF00301 Rubredoxin SH05_RS17790 PF00258 Flavodoxin SH05_RS17795 PF18113 Rubredoxin binding C-terminal domain SH05_RS17795 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS17800 PF00708 Acylphosphatase SH05_RS17800 PF01300 Telomere recombination SH05_RS17800 PF17788 HypF Kae1-like domain SH05_RS17800 PF07503 HypF finger SH05_RS17805 PF12800 4Fe-4S binding domain SH05_RS17805 PF13247 4Fe-4S dicluster domain SH05_RS17810 PF00356 Bacterial regulatory proteins, lacI family SH05_RS17815 PF02378 Phosphotransferase system, EIIC SH05_RS17815 PF00367 phosphotransferase system, EIIB SH05_RS17820 PF00232 Glycosyl hydrolase family 1 SH05_RS17825 PF01750 Hydrogenase maturation protease SH05_RS17830 PF07450 Formate hydrogenlyase maturation protein HycH SH05_RS17835 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH05_RS17840 PF12838 4Fe-4S dicluster domain SH05_RS17845 PF00374 Nickel-dependent hydrogenase SH05_RS17845 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH05_RS17845 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH05_RS17850 PF00146 NADH dehydrogenase SH05_RS17855 PF00361 Proton-conducting membrane transporter SH05_RS17860 PF13247 4Fe-4S dicluster domain SH05_RS17870 PF11046 Transcriptional repressor of hyc and hyp operons SH05_RS17875 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH05_RS17880 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH05_RS17885 PF01455 HupF/HypC family SH05_RS17890 PF01924 Hydrogenase formation hypA family SH05_RS17895 PF02769 AIR synthase related protein, C-terminal domain SH05_RS17895 PF00586 AIR synthase related protein, N-terminal domain SH05_RS17900 PF01590 GAF domain SH05_RS17900 PF00158 Sigma-54 interaction domain SH05_RS17905 PF11756 Nitrous oxide-stimulated promoter SH05_RS17910 PF05190 MutS family domain IV SH05_RS17910 PF00488 MutS domain V SH05_RS17910 PF01624 MutS domain I SH05_RS17910 PF05188 MutS domain II SH05_RS17910 PF05192 MutS domain III SH05_RS17915 PF00149 Calcineurin-like phosphoesterase SH05_RS17920 PF00455 DeoR C terminal sensor domain SH05_RS17920 PF08220 DeoR-like helix-turn-helix domain SH05_RS17925 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH05_RS17925 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH05_RS17935 PF00596 Class II Aldolase and Adducin N-terminal domain SH05_RS17940 PF01261 Xylose isomerase-like TIM barrel SH05_RS17945 PF02447 GntP family permease SH05_RS17950 PF00140 Sigma-70 factor, region 1.2 SH05_RS17950 PF04542 Sigma-70 region 2 SH05_RS17950 PF04545 Sigma-70, region 4 SH05_RS17950 PF04539 Sigma-70 region 3 SH05_RS17955 PF01551 Peptidase family M23 SH05_RS17955 PF01476 LysM domain SH05_RS17965 PF01975 Survival protein SurE SH05_RS17970 PF01142 tRNA pseudouridine synthase D (TruD) SH05_RS17975 PF02542 YgbB family SH05_RS17980 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase SH05_RS17985 PF04977 Septum formation initiator SH05_RS17990 PF12084 Protein of unknown function (DUF3561) SH05_RS18000 PF00009 Elongation factor Tu GTP binding domain SH05_RS18005 PF01507 Phosphoadenosine phosphosulfate reductase family SH05_RS18010 PF04389 Peptidase family M28 SH05_RS18015 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) SH05_RS18020 PF01867 CRISPR associated protein Cas1 SH05_RS18025 PF08798 CRISPR associated protein SH05_RS18030 PF09704 CRISPR-associated protein (Cas_Cas5) SH05_RS18035 PF09344 CT1975-like protein SH05_RS18040 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) SH05_RS18045 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) SH05_RS18050 PF18019 HD domain SH05_RS18050 PF00270 DEAD/DEAH box helicase SH05_RS18050 PF00271 Helicase conserved C-terminal domain SH05_RS18055 PF01507 Phosphoadenosine phosphosulfate reductase family SH05_RS18060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH05_RS18060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH05_RS18065 PF00667 FAD binding domain SH05_RS18065 PF00258 Flavodoxin SH05_RS18065 PF00175 Oxidoreductase NAD-binding domain SH05_RS18070 PF01242 6-pyruvoyl tetrahydropterin synthase SH05_RS18075 PF01266 FAD dependent oxidoreductase SH05_RS18085 PF04309 Glycerol-3-phosphate responsive antiterminator SH05_RS18090 PF01012 Electron transfer flavoprotein domain SH05_RS18090 PF00766 Electron transfer flavoprotein FAD-binding domain SH05_RS18095 PF01012 Electron transfer flavoprotein domain SH05_RS18100 PF00083 Sugar (and other) transporter SH05_RS18105 PF02913 FAD linked oxidases, C-terminal domain SH05_RS18105 PF01565 FAD binding domain SH05_RS18115 PF07690 Major Facilitator Superfamily SH05_RS18120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH05_RS18120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH05_RS18125 PF04055 Radical SAM superfamily SH05_RS18135 PF04536 TPM domain SH05_RS18140 PF03952 Enolase, N-terminal domain SH05_RS18140 PF00113 Enolase, C-terminal TIM barrel domain SH05_RS18145 PF00117 Glutamine amidotransferase class-I SH05_RS18145 PF06418 CTP synthase N-terminus SH05_RS18150 PF03819 MazG nucleotide pyrophosphohydrolase domain SH05_RS18155 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH05_RS18160 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH05_RS18165 PF13291 ACT domain SH05_RS18165 PF04607 Region found in RelA / SpoT proteins SH05_RS18165 PF02824 TGS domain SH05_RS18170 PF05958 tRNA (Uracil-5-)-methyltransferase SH05_RS18170 PF01938 TRAM domain SH05_RS18175 PF00672 HAMP domain SH05_RS18175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS18175 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS18175 PF01627 Hpt domain SH05_RS18175 PF00072 Response regulator receiver domain SH05_RS18175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SH05_RS18180 PF13378 Enolase C-terminal domain-like SH05_RS18185 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH05_RS18185 PF13378 Enolase C-terminal domain-like SH05_RS18190 PF07690 Major Facilitator Superfamily SH05_RS18195 PF00258 Flavodoxin SH05_RS18200 PF00849 RNA pseudouridylate synthase SH05_RS18205 PF04287 tRNA pseudouridine synthase C SH05_RS18215 PF07348 Syd protein (SUKH-2) SH05_RS18220 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SH05_RS18220 PF14489 QueF-like protein SH05_RS18225 PF03641 Possible lysine decarboxylase SH05_RS18225 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SH05_RS18225 PF11892 Domain of unknown function (DUF3412) SH05_RS18235 PF03315 Serine dehydratase beta chain SH05_RS18235 PF03313 Serine dehydratase alpha chain SH05_RS18240 PF01367 5'-3' exonuclease, C-terminal SAM fold SH05_RS18240 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH05_RS18245 PF00465 Iron-containing alcohol dehydrogenase SH05_RS18250 PF00596 Class II Aldolase and Adducin N-terminal domain SH05_RS18255 PF07690 Major Facilitator Superfamily SH05_RS18260 PF07881 L-fucose isomerase, first N-terminal domain SH05_RS18260 PF07882 L-fucose isomerase, second N-terminal domain SH05_RS18260 PF02952 L-fucose isomerase, C-terminal domain SH05_RS18265 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH05_RS18265 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH05_RS18270 PF05025 RbsD / FucU transport protein family SH05_RS18275 PF00455 DeoR C terminal sensor domain SH05_RS18275 PF08220 DeoR-like helix-turn-helix domain SH05_RS18280 PF01728 FtsJ-like methyltransferase SH05_RS18280 PF18125 RlmM ferredoxin-like domain SH05_RS18285 PF04241 Protein of unknown function (DUF423) SH05_RS18290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS18290 PF03466 LysR substrate binding domain SH05_RS18295 PF06004 Bacterial protein of unknown function (DUF903) SH05_RS18300 PF00266 Aminotransferase class-V SH05_RS18305 PF02657 Fe-S metabolism associated domain SH05_RS18310 PF00899 ThiF family SH05_RS18315 PF06725 3D domain SH05_RS18315 PF03562 MltA specific insert domain SH05_RS18335 PF01520 N-acetylmuramoyl-L-alanine amidase SH05_RS18335 PF11741 AMIN domain SH05_RS18340 PF00696 Amino acid kinase family SH05_RS18340 PF00583 Acetyltransferase (GNAT) family SH05_RS18350 PF00580 UvrD/REP helicase N-terminal domain SH05_RS18350 PF12705 PD-(D/E)XK nuclease superfamily SH05_RS18350 PF13361 UvrD-like helicase C-terminal domain SH05_RS18355 PF05193 Peptidase M16 inactive domain SH05_RS18355 PF00675 Insulinase (Peptidase family M16) SH05_RS18355 PF16187 Middle or third domain of peptidase_M16 SH05_RS18360 PF17946 RecC C-terminal domain SH05_RS18365 PF07963 Prokaryotic N-terminal methylation motif SH05_RS18365 PF12528 Type II secretion prepilin peptidase dependent protein C SH05_RS18370 PF10713 Protein of unknown function (DUF2509) SH05_RS18375 PF07963 Prokaryotic N-terminal methylation motif SH05_RS18380 PF07963 Prokaryotic N-terminal methylation motif SH05_RS18385 PF00303 Thymidylate synthase SH05_RS18390 PF01790 Prolipoprotein diacylglyceryl transferase SH05_RS18395 PF00391 PEP-utilising enzyme, mobile domain SH05_RS18395 PF02896 PEP-utilising enzyme, TIM barrel domain SH05_RS18395 PF05524 PEP-utilising enzyme, N-terminal SH05_RS18395 PF01590 GAF domain SH05_RS18400 PF00293 NUDIX domain SH05_RS18415 PF02976 DNA mismatch repair enzyme MutH SH05_RS18420 PF03741 Integral membrane protein TerC family SH05_RS18425 PF06004 Bacterial protein of unknown function (DUF903) SH05_RS18430 PF00248 Aldo/keto reductase family SH05_RS18435 PF07690 Major Facilitator Superfamily SH05_RS18440 PF00501 AMP-binding enzyme SH05_RS18440 PF01553 Acyltransferase SH05_RS18445 PF00356 Bacterial regulatory proteins, lacI family SH05_RS18450 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SH05_RS18450 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH05_RS18455 PF03466 LysR substrate binding domain SH05_RS18455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS18460 PF01177 Asp/Glu/Hydantoin racemase SH05_RS18465 PF00083 Sugar (and other) transporter SH05_RS18475 PF04962 KduI/IolB family SH05_RS18480 PF02803 Thiolase, C-terminal domain SH05_RS18480 PF00108 Thiolase, N-terminal domain SH05_RS18485 PF03222 Tryptophan/tyrosine permease family SH05_RS18490 PF00196 Bacterial regulatory proteins, luxR family SH05_RS18495 PF00486 Transcriptional regulatory protein, C terminal SH05_RS18515 PF07720 Tetratricopeptide repeat SH05_RS18520 PF00486 Transcriptional regulatory protein, C terminal SH05_RS18535 PF00196 Bacterial regulatory proteins, luxR family SH05_RS18535 PF00072 Response regulator receiver domain SH05_RS18540 PF00196 Bacterial regulatory proteins, luxR family SH05_RS18540 PF00072 Response regulator receiver domain SH05_RS18560 PF00665 Integrase core domain SH05_RS18560 PF13276 HTH-like domain SH05_RS18565 PF01527 Transposase SH05_RS18585 PF01551 Peptidase family M23 SH05_RS18585 PF01476 LysM domain SH05_RS18590 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH05_RS18590 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH05_RS18595 PF00941 FAD binding domain in molybdopterin dehydrogenase SH05_RS18595 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH05_RS18600 PF01799 [2Fe-2S] binding domain SH05_RS18600 PF00111 2Fe-2S iron-sulfur cluster binding domain SH05_RS18605 PF02954 Bacterial regulatory protein, Fis family SH05_RS18605 PF13188 PAS domain SH05_RS18605 PF00158 Sigma-54 interaction domain SH05_RS18610 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH05_RS18610 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH05_RS18615 PF00291 Pyridoxal-phosphate dependent enzyme SH05_RS18620 PF01546 Peptidase family M20/M25/M40 SH05_RS18620 PF07687 Peptidase dimerisation domain SH05_RS18625 PF01979 Amidohydrolase family SH05_RS18630 PF00696 Amino acid kinase family SH05_RS18635 PF13478 XdhC Rossmann domain SH05_RS18635 PF02625 XdhC and CoxI family SH05_RS18645 PF12804 MobA-like NTP transferase domain SH05_RS18650 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH05_RS18650 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS18655 PF01979 Amidohydrolase family SH05_RS18660 PF00941 FAD binding domain in molybdopterin dehydrogenase SH05_RS18665 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH05_RS18665 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH05_RS18665 PF01799 [2Fe-2S] binding domain SH05_RS18670 PF00860 Permease family SH05_RS18675 PF01979 Amidohydrolase family SH05_RS18680 PF00860 Permease family SH05_RS18685 PF13247 4Fe-4S dicluster domain SH05_RS18690 PF13247 4Fe-4S dicluster domain SH05_RS18690 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH05_RS18690 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS18700 PF00860 Permease family SH05_RS18710 PF00293 NUDIX domain SH05_RS18715 PF01336 OB-fold nucleic acid binding domain SH05_RS18715 PF00152 tRNA synthetases class II (D, K and N) SH05_RS18720 PF00472 RF-1 domain SH05_RS18720 PF03462 PCRF domain SH05_RS18725 PF02272 DHHA1 domain SH05_RS18725 PF17768 RecJ OB domain SH05_RS18725 PF01368 DHH family SH05_RS18730 PF13098 Thioredoxin-like domain SH05_RS18730 PF10411 Disulfide bond isomerase protein N-terminus SH05_RS18735 PF00589 Phage integrase family SH05_RS18735 PF02899 Phage integrase, N-terminal SAM-like domain SH05_RS18740 PF00258 Flavodoxin SH05_RS18745 PF07254 Membrane-bound toxin component of toxin-antitoxin system SH05_RS18750 PF03937 Flavinator of succinate dehydrogenase SH05_RS18755 PF01571 Aminomethyltransferase folate-binding domain SH05_RS18760 PF03006 Haemolysin-III related SH05_RS18765 PF04266 ASCH domain SH05_RS18770 PF00232 Glycosyl hydrolase family 1 SH05_RS18780 PF02347 Glycine cleavage system P-protein SH05_RS18785 PF01597 Glycine cleavage H-protein SH05_RS18790 PF08669 Glycine cleavage T-protein C-terminal barrel domain SH05_RS18790 PF01571 Aminomethyltransferase folate-binding domain SH05_RS18795 PF01494 FAD binding domain SH05_RS18800 PF01494 FAD binding domain SH05_RS18805 PF05195 Aminopeptidase P, N-terminal domain SH05_RS18805 PF00557 Metallopeptidase family M24 SH05_RS18810 PF03695 Uncharacterised protein family (UPF0149) SH05_RS18815 PF05164 Cell division protein ZapA SH05_RS18820 PF01812 5-formyltetrahydrofolate cyclo-ligase family SH05_RS18825 PF01842 ACT domain SH05_RS18825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH05_RS18825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH05_RS18830 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SH05_RS18835 PF03466 LysR substrate binding domain SH05_RS18840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS18840 PF03466 LysR substrate binding domain SH05_RS18845 PF01642 Methylmalonyl-CoA mutase SH05_RS18845 PF02310 B12 binding domain SH05_RS18855 PF00378 Enoyl-CoA hydratase/isomerase SH05_RS18860 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SH05_RS18860 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SH05_RS18865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS18865 PF03466 LysR substrate binding domain SH05_RS18870 PF04402 Protein of unknown function (DUF541) SH05_RS18875 PF01810 LysE type translocator SH05_RS18880 PF00924 Mechanosensitive ion channel SH05_RS18880 PF05552 Conserved TM helix SH05_RS18885 PF01116 Fructose-bisphosphate aldolase class-II SH05_RS18890 PF00162 Phosphoglycerate kinase SH05_RS18895 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH05_RS18895 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH05_RS18905 PF05068 Mannitol repressor SH05_RS18910 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH05_RS18915 PF00107 Zinc-binding dehydrogenase SH05_RS18915 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS18920 PF02378 Phosphotransferase system, EIIC SH05_RS18920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH05_RS18925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS18930 PF02780 Transketolase, C-terminal domain SH05_RS18930 PF02779 Transketolase, pyrimidine binding domain SH05_RS18930 PF00456 Transketolase, thiamine diphosphate binding domain SH05_RS18935 PF01435 Peptidase family M48 SH05_RS18940 PF00491 Arginase family SH05_RS18945 PF17810 Arginine decarboxylase helical bundle domain SH05_RS18945 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH05_RS18945 PF17944 Arginine decarboxylase C-terminal helical extension SH05_RS18950 PF11036 Virulence promoting factor SH05_RS18965 PF02773 S-adenosylmethionine synthetase, C-terminal domain SH05_RS18965 PF02772 S-adenosylmethionine synthetase, central domain SH05_RS18965 PF00438 S-adenosylmethionine synthetase, N-terminal domain SH05_RS18975 PF10263 SprT-like family SH05_RS18975 PF17283 SprT-like zinc ribbon domain SH05_RS18980 PF04231 Endonuclease I SH05_RS18985 PF04452 RNA methyltransferase SH05_RS18990 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SH05_RS18990 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SH05_RS18995 PF02622 Uncharacterized ACR, COG1678 SH05_RS19000 PF03652 Holliday junction resolvase SH05_RS19005 PF00437 Type II/IV secretion system protein SH05_RS19010 PF01168 Alanine racemase, N-terminal domain SH05_RS19015 PF02325 YGGT family SH05_RS19020 PF02594 Uncharacterised ACR, YggU family COG1872 SH05_RS19025 PF01725 Ham1 family SH05_RS19030 PF04055 Radical SAM superfamily SH05_RS19030 PF06969 HemN C-terminal domain SH05_RS19035 PF06717 Protein of unknown function (DUF1202) SH05_RS19040 PF17763 Glutaminase/Asparaginase C-terminal domain SH05_RS19040 PF00710 Asparaginase, N-terminal SH05_RS19045 PF11101 Protein of unknown function (DUF2884) SH05_RS19055 PF04320 Protein with unknown function (DUF469) SH05_RS19060 PF02390 Putative methyltransferase SH05_RS19065 PF14815 NUDIX domain SH05_RS19065 PF00633 Helix-hairpin-helix motif SH05_RS19065 PF00730 HhH-GPD superfamily base excision DNA repair protein SH05_RS19065 PF10576 Iron-sulfur binding domain of endonuclease III SH05_RS19070 PF04362 Bacterial Fe(2+) trafficking SH05_RS19075 PF01464 Transglycosylase SLT domain SH05_RS19075 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SH05_RS19080 PF03825 Nucleoside H+ symporter SH05_RS19085 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH05_RS19085 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH05_RS19085 PF01276 Orn/Lys/Arg decarboxylase, major domain SH05_RS19090 PF04474 Protein of unknown function (DUF554) SH05_RS19100 PF04612 Type II secretion system (T2SS), protein M SH05_RS19105 PF12693 GspL periplasmic domain SH05_RS19110 PF11356 Type II secretion system protein C SH05_RS19115 PF16549 Type II secretion system (T2SS) pilotin, S protein SH05_RS19120 PF06750 Bacterial Peptidase A24 N-terminal domain SH05_RS19120 PF01478 Type IV leader peptidase family SH05_RS19125 PF17291 N-terminal domain of M60-like peptidases SH05_RS19125 PF13402 Peptidase M60, enhancin and enhancin-like SH05_RS19125 PF13322 Domain of unknown function (DUF4092) SH05_RS19135 PF02652 L-lactate permease SH05_RS19140 PF01274 Malate synthase SH05_RS19145 PF03928 Haem-degrading SH05_RS19150 PF02754 Cysteine-rich domain SH05_RS19150 PF13183 4Fe-4S dicluster domain SH05_RS19155 PF01565 FAD binding domain SH05_RS19160 PF02913 FAD linked oxidases, C-terminal domain SH05_RS19160 PF01565 FAD binding domain SH05_RS19165 PF00392 Bacterial regulatory proteins, gntR family SH05_RS19165 PF07729 FCD domain SH05_RS19175 PF05598 Transposase domain (DUF772) SH05_RS19175 PF01609 Transposase DDE domain SH05_RS19180 PF01943 Polysaccharide biosynthesis protein SH05_RS19200 PF01384 Phosphate transporter family SH05_RS19205 PF03738 Glutathionylspermidine synthase preATP-grasp SH05_RS19205 PF05257 CHAP domain SH05_RS19210 PF02798 Glutathione S-transferase, N-terminal domain SH05_RS19215 PF01455 HupF/HypC family SH05_RS19220 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH05_RS19225 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE SH05_RS19230 PF01750 Hydrogenase maturation protease SH05_RS19235 PF00374 Nickel-dependent hydrogenase SH05_RS19240 PF03916 Polysulphide reductase, NrfD SH05_RS19245 PF13247 4Fe-4S dicluster domain SH05_RS19250 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH05_RS19250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH05_RS19260 PF11115 Protein of unknown function (DUF2623) SH05_RS19270 PF00248 Aldo/keto reductase family SH05_RS19275 PF03350 Uncharacterized protein family, UPF0114 SH05_RS19285 PF02472 Biopolymer transport protein ExbD/TolR SH05_RS19290 PF01618 MotA/TolQ/ExbB proton channel family SH05_RS19300 PF01053 Cys/Met metabolism PLP-dependent enzyme SH05_RS19305 PF09335 SNARE associated Golgi protein SH05_RS19310 PF06719 AraC-type transcriptional regulator N-terminus SH05_RS19310 PF12833 Helix-turn-helix domain SH05_RS19320 PF00465 Iron-containing alcohol dehydrogenase SH05_RS19325 PF00248 Aldo/keto reductase family SH05_RS19330 PF12883 Protein of unknown function (DUF3828) SH05_RS19335 PF04728 Lipoprotein leucine-zipper SH05_RS19340 PF04055 Radical SAM superfamily SH05_RS19340 PF08497 Radical SAM N-terminal SH05_RS19340 PF11842 Domain of unknown function (DUF3362) SH05_RS19345 PF07732 Multicopper oxidase SH05_RS19345 PF00394 Multicopper oxidase SH05_RS19345 PF07731 Multicopper oxidase SH05_RS19350 PF01553 Acyltransferase SH05_RS19355 PF03989 DNA gyrase C-terminal domain, beta-propeller SH05_RS19355 PF00521 DNA gyrase/topoisomerase IV, subunit A SH05_RS19360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS19365 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA SH05_RS19370 PF15723 Motility quorum-sensing regulator, toxin of MqsA SH05_RS19375 PF06445 GyrI-like small molecule binding domain SH05_RS19380 PF04076 Bacterial OB fold (BOF) protein SH05_RS19385 PF00486 Transcriptional regulatory protein, C terminal SH05_RS19385 PF00072 Response regulator receiver domain SH05_RS19390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS19390 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS19390 PF08521 Two-component sensor kinase N-terminal SH05_RS19395 PF10840 Protein of unknown function (DUF2645) SH05_RS19400 PF02525 Flavodoxin-like fold SH05_RS19405 PF03992 Antibiotic biosynthesis monooxygenase SH05_RS19410 PF01751 Toprim domain SH05_RS19410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS19410 PF00986 DNA gyrase B subunit, carboxyl terminus SH05_RS19410 PF00204 DNA gyrase B SH05_RS19415 PF05728 Uncharacterised protein family (UPF0227) SH05_RS19420 PF00149 Calcineurin-like phosphoesterase SH05_RS19425 PF06853 Protein of unknown function (DUF1249) SH05_RS19430 PF00293 NUDIX domain SH05_RS19435 PF02321 Outer membrane efflux protein SH05_RS19445 PF06693 Protein of unknown function (DUF1190) SH05_RS19450 PF03738 Glutathionylspermidine synthase preATP-grasp SH05_RS19455 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH05_RS19460 PF02535 ZIP Zinc transporter SH05_RS19470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SH05_RS19475 PF04380 Membrane fusogenic activity SH05_RS19480 PF00419 Fimbrial protein SH05_RS19485 PF01527 Transposase SH05_RS19490 PF13276 HTH-like domain SH05_RS19490 PF00665 Integrase core domain SH05_RS19495 PF13953 PapC C-terminal domain SH05_RS19495 PF13954 PapC N-terminal domain SH05_RS19495 PF00577 Outer membrane usher protein SH05_RS19500 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS19500 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS19510 PF08971 Glycogen synthesis protein SH05_RS19515 PF07290 Protein of unknown function (DUF1449) SH05_RS19520 PF01145 SPFH domain / Band 7 family SH05_RS19520 PF15975 Flotillin SH05_RS19535 PF00294 pfkB family carbohydrate kinase SH05_RS19535 PF01467 Cytidylyltransferase-like SH05_RS19540 PF03710 Glutamate-ammonia ligase adenylyltransferase SH05_RS19540 PF08335 GlnD PII-uridylyltransferase SH05_RS19545 PF01928 CYTH domain SH05_RS19555 PF08239 Bacterial SH3 domain SH05_RS19560 PF01966 HD domain SH05_RS19560 PF01743 Poly A polymerase head domain SH05_RS19560 PF12627 Probable RNA and SrmB- binding site of polymerase A SH05_RS19565 PF02673 Bacitracin resistance protein BacA SH05_RS19570 PF02152 Dihydroneopterin aldolase SH05_RS19575 PF02660 Glycerol-3-phosphate acyltransferase SH05_RS19580 PF03466 LysR substrate binding domain SH05_RS19580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS19585 PF05681 Fumarate hydratase (Fumerase) SH05_RS19595 PF00939 Sodium:sulfate symporter transmembrane region SH05_RS19600 PF00814 Glycoprotease family SH05_RS19605 PF01165 Ribosomal protein S21 SH05_RS19610 PF01807 CHC2 zinc finger SH05_RS19610 PF08275 DNA primase catalytic core, N-terminal domain SH05_RS19610 PF10410 DnaB-helicase binding domain of primase SH05_RS19610 PF08278 DNA primase DnaG DnaB-binding SH05_RS19615 PF04545 Sigma-70, region 4 SH05_RS19615 PF04539 Sigma-70 region 3 SH05_RS19615 PF04542 Sigma-70 region 2 SH05_RS19615 PF00140 Sigma-70 factor, region 1.2 SH05_RS19615 PF03979 Sigma-70 factor, region 1.1 SH05_RS19615 PF04546 Sigma-70, non-essential region SH05_RS19620 PF03167 Uracil DNA glycosylase superfamily SH05_RS19630 PF08021 Siderophore-interacting FAD-binding domain SH05_RS19630 PF04954 Siderophore-interacting protein SH05_RS19635 PF03551 Transcriptional regulator PadR-like family SH05_RS19640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH05_RS19640 PF08447 PAS fold SH05_RS19645 PF00202 Aminotransferase class-III SH05_RS19650 PF01588 Putative tRNA binding domain SH05_RS19655 PF00356 Bacterial regulatory proteins, lacI family SH05_RS19660 PF16353 Domain of unknown function(DUF4981) SH05_RS19660 PF00703 Glycosyl hydrolases family 2 SH05_RS19660 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH05_RS19660 PF02929 Beta galactosidase small chain SH05_RS19660 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH05_RS19665 PF04074 YhcH/YjgK/YiaL SH05_RS19670 PF13520 Amino acid permease SH05_RS19680 PF01204 Trehalase SH05_RS19685 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS19685 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH05_RS19690 PF01381 Helix-turn-helix SH05_RS19695 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SH05_RS19705 PF05175 Methyltransferase small domain SH05_RS19710 PF01863 Protein of unknown function DUF45 SH05_RS19715 PF02698 DUF218 domain SH05_RS19720 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH05_RS19725 PF03741 Integral membrane protein TerC family SH05_RS19730 PF00375 Sodium:dicarboxylate symporter family SH05_RS19735 PF10688 Bacterial inner membrane protein SH05_RS19740 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH05_RS19740 PF08666 SAF domain SH05_RS19745 PF02614 Glucuronate isomerase SH05_RS19750 PF07690 Major Facilitator Superfamily SH05_RS19755 PF07729 FCD domain SH05_RS19755 PF00392 Bacterial regulatory proteins, gntR family SH05_RS19760 PF09335 SNARE associated Golgi protein SH05_RS19765 PF13721 SecD export protein N-terminal TM region SH05_RS19770 PF06476 Protein of unknown function (DUF1090) SH05_RS19775 PF05957 Bacterial protein of unknown function (DUF883) SH05_RS19780 PF07332 Putative Actinobacterial Holin-X, holin superfamily III SH05_RS19785 PF13997 YqjK-like protein SH05_RS19790 PF07681 DoxX SH05_RS19795 PF13409 Glutathione S-transferase, N-terminal domain SH05_RS19800 PF05656 Protein of unknown function (DUF805) SH05_RS19805 PF05656 Protein of unknown function (DUF805) SH05_RS19810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS19810 PF03466 LysR substrate binding domain SH05_RS19815 PF02678 Pirin SH05_RS19815 PF17954 Quercetinase C-terminal cupin domain SH05_RS19825 PF03313 Serine dehydratase alpha chain SH05_RS19835 PF03313 Serine dehydratase alpha chain SH05_RS19835 PF03315 Serine dehydratase beta chain SH05_RS19840 PF01042 Endoribonuclease L-PSP SH05_RS19845 PF02901 Pyruvate formate lyase-like SH05_RS19845 PF01228 Glycine radical SH05_RS19855 PF01609 Transposase DDE domain SH05_RS19855 PF05598 Transposase domain (DUF772) SH05_RS19860 PF00871 Acetokinase family SH05_RS19865 PF03222 Tryptophan/tyrosine permease family SH05_RS19870 PF00291 Pyridoxal-phosphate dependent enzyme SH05_RS19875 PF03466 LysR substrate binding domain SH05_RS19875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS19895 PF02595 Glycerate kinase family SH05_RS19900 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH05_RS19900 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH05_RS19905 PF03328 HpcH/HpaI aldolase/citrate lyase family SH05_RS19910 PF07690 Major Facilitator Superfamily SH05_RS19915 PF08666 SAF domain SH05_RS19915 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH05_RS19920 PF15937 prlF antitoxin for toxin YhaV_toxin SH05_RS19925 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system SH05_RS19930 PF00455 DeoR C terminal sensor domain SH05_RS19930 PF08220 DeoR-like helix-turn-helix domain SH05_RS19935 PF08013 Tagatose 6 phosphate kinase SH05_RS19940 PF03830 PTS system sorbose subfamily IIB component SH05_RS19945 PF03609 PTS system sorbose-specific iic component SH05_RS19950 PF01979 Amidohydrolase family SH05_RS19955 PF01380 SIS domain SH05_RS19960 PF01116 Fructose-bisphosphate aldolase class-II SH05_RS19965 PF03830 PTS system sorbose subfamily IIB component SH05_RS19970 PF03609 PTS system sorbose-specific iic component SH05_RS19975 PF03613 PTS system mannose/fructose/sorbose family IID component SH05_RS19980 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH05_RS19985 PF00419 Fimbrial protein SH05_RS19990 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH05_RS19990 PF02753 Pili assembly chaperone PapD, C-terminal domain SH05_RS19995 PF13953 PapC C-terminal domain SH05_RS19995 PF13954 PapC N-terminal domain SH05_RS19995 PF00577 Outer membrane usher protein SH05_RS20000 PF00419 Fimbrial protein SH05_RS20005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH05_RS20010 PF04348 LppC putative lipoprotein SH05_RS20015 PF02021 Uncharacterised protein family UPF0102 SH05_RS20020 PF13580 SIS domain SH05_RS20025 PF04972 BON domain SH05_RS20030 PF03773 Predicted permease SH05_RS20035 PF13460 NAD(P)H-binding SH05_RS20040 PF01965 DJ-1/PfpI family SH05_RS20050 PF01541 GIY-YIG catalytic domain SH05_RS20055 PF13508 Acetyltransferase (GNAT) domain SH05_RS20060 PF02036 SCP-2 sterol transfer family SH05_RS20065 PF01136 Peptidase family U32 SH05_RS20070 PF01136 Peptidase family U32 SH05_RS20075 PF00296 Luciferase-like monooxygenase SH05_RS20080 PF03222 Tryptophan/tyrosine permease family SH05_RS20090 PF00270 DEAD/DEAH box helicase SH05_RS20090 PF03880 DbpA RNA binding domain SH05_RS20090 PF12343 Cold shock protein DEAD box A SH05_RS20090 PF00271 Helicase conserved C-terminal domain SH05_RS20095 PF13181 Tetratricopeptide repeat SH05_RS20095 PF07719 Tetratricopeptide repeat SH05_RS20100 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SH05_RS20100 PF03725 3' exoribonuclease family, domain 2 SH05_RS20100 PF00575 S1 RNA binding domain SH05_RS20100 PF00013 KH domain SH05_RS20100 PF01138 3' exoribonuclease family, domain 1 SH05_RS20105 PF00312 Ribosomal protein S15 SH05_RS20110 PF01509 TruB family pseudouridylate synthase (N terminal domain) SH05_RS20110 PF16198 tRNA pseudouridylate synthase B C-terminal domain SH05_RS20110 PF09157 Pseudouridine synthase II TruB, C-terminal SH05_RS20115 PF02033 Ribosome-binding factor A SH05_RS20120 PF11987 Translation-initiation factor 2 SH05_RS20120 PF00009 Elongation factor Tu GTP binding domain SH05_RS20120 PF08364 Bacterial translation initiation factor IF-2 associated region SH05_RS20120 PF04760 Translation initiation factor IF-2, N-terminal region SH05_RS20125 PF00575 S1 RNA binding domain SH05_RS20125 PF08529 NusA N-terminal domain SH05_RS20125 PF13184 NusA-like KH domain SH05_RS20130 PF17384 RimP C-terminal SH3 domain SH05_RS20130 PF02576 RimP N-terminal domain SH05_RS20140 PF00764 Arginosuccinate synthase SH05_RS20145 PF00884 Sulfatase SH05_RS20155 PF03840 Preprotein translocase SecG subunit SH05_RS20160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH05_RS20160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH05_RS20160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH05_RS20160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH05_RS20165 PF00809 Pterin binding enzyme SH05_RS20170 PF01434 Peptidase family M41 SH05_RS20170 PF06480 FtsH Extracellular SH05_RS20170 PF00004 ATPase family associated with various cellular activities (AAA) SH05_RS20170 PF17862 AAA+ lid domain SH05_RS20175 PF01728 FtsJ-like methyltransferase SH05_RS20180 PF01985 CRS1 / YhbY (CRM) domain SH05_RS20185 PF01272 Transcription elongation factor, GreA/GreB, C-term SH05_RS20185 PF03449 Transcription elongation factor, N-terminal SH05_RS20190 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family SH05_RS20195 PF01926 50S ribosome-binding GTPase SH05_RS20195 PF01018 GTP1/OBG SH05_RS20200 PF00892 EamA-like transporter family SH05_RS20205 PF01016 Ribosomal L27 protein SH05_RS20210 PF00829 Ribosomal prokaryotic L21 protein SH05_RS20215 PF00348 Polyprenyl synthetase SH05_RS20220 PF13693 Winged helix-turn-helix DNA-binding SH05_RS20225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH05_RS20230 PF01722 BolA-like protein SH05_RS20235 PF13466 STAS domain SH05_RS20240 PF05494 MlaC protein SH05_RS20245 PF02470 MlaD protein SH05_RS20250 PF02405 Permease MlaE SH05_RS20255 PF00005 ABC transporter SH05_RS20260 PF01699 Sodium/calcium exchanger protein SH05_RS20265 PF01380 SIS domain SH05_RS20265 PF00571 CBS domain SH05_RS20275 PF06835 Lipopolysaccharide-assembly, LptC-related SH05_RS20280 PF03968 OstA-like protein SH05_RS20285 PF00005 ABC transporter SH05_RS20285 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH05_RS20290 PF04552 Sigma-54, DNA binding domain SH05_RS20290 PF04963 Sigma-54 factor, core binding domain SH05_RS20290 PF00309 Sigma-54 factor, Activator interacting domain (AID) SH05_RS20295 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH05_RS20300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH05_RS20305 PF03668 P-loop ATPase protein family SH05_RS20310 PF00381 PTS HPr component phosphorylation site SH05_RS20315 PF10707 PhoP regulatory network protein YrbL SH05_RS20320 PF05598 Transposase domain (DUF772) SH05_RS20320 PF01609 Transposase DDE domain SH05_RS20330 PF06551 Protein of unknown function (DUF1120) SH05_RS20335 PF06250 YhcG PDDEXK nuclease domain SH05_RS20335 PF17761 DUF1016 N-terminal domain SH05_RS20340 PF04074 YhcH/YjgK/YiaL SH05_RS20345 PF00480 ROK family SH05_RS20350 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SH05_RS20355 PF07690 Major Facilitator Superfamily SH05_RS20360 PF00701 Dihydrodipicolinate synthetase family SH05_RS20365 PF07729 FCD domain SH05_RS20365 PF00392 Bacterial regulatory proteins, gntR family SH05_RS20370 PF03606 C4-dicarboxylate anaerobic carrier SH05_RS20375 PF04386 Stringent starvation protein B SH05_RS20380 PF02798 Glutathione S-transferase, N-terminal domain SH05_RS20380 PF00043 Glutathione S-transferase, C-terminal domain SH05_RS20385 PF00380 Ribosomal protein S9/S16 SH05_RS20390 PF00572 Ribosomal protein L13 SH05_RS20395 PF03969 AFG1-like ATPase SH05_RS20400 PF06295 Protein of unknown function (DUF1043) SH05_RS20405 PF13180 PDZ domain SH05_RS20405 PF00595 PDZ domain SH05_RS20410 PF13180 PDZ domain SH05_RS20415 PF00056 lactate/malate dehydrogenase, NAD binding domain SH05_RS20415 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SH05_RS20420 PF01316 Arginine repressor, DNA binding domain SH05_RS20420 PF02863 Arginine repressor, C-terminal domain SH05_RS20425 PF07338 Protein of unknown function (DUF1471) SH05_RS20430 PF01337 Barstar (barnase inhibitor) SH05_RS20435 PF04632 Fusaric acid resistance protein family SH05_RS20440 PF13533 Biotin-lipoyl like SH05_RS20445 PF07869 Protein of unknown function (DUF1656) SH05_RS20450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS20450 PF03466 LysR substrate binding domain SH05_RS20455 PF01523 Putative modulator of DNA gyrase SH05_RS20460 PF13116 Protein of unknown function SH05_RS20460 PF13502 AsmA-like C-terminal region SH05_RS20465 PF10150 Ribonuclease E/G family SH05_RS20465 PF00575 S1 RNA binding domain SH05_RS20470 PF02545 Maf-like protein SH05_RS20475 PF04093 rod shape-determining protein MreD SH05_RS20480 PF04085 rod shape-determining protein MreC SH05_RS20495 PF00563 EAL domain SH05_RS20495 PF17157 Gammaproteobacterial periplasmic sensor domain SH05_RS20495 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS20500 PF00107 Zinc-binding dehydrogenase SH05_RS20500 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS20515 PF01794 Ferric reductase like transmembrane component SH05_RS20520 PF00364 Biotin-requiring enzyme SH05_RS20525 PF00289 Biotin carboxylase, N-terminal domain SH05_RS20525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH05_RS20525 PF02785 Biotin carboxylase C-terminal domain SH05_RS20530 PF06196 Protein of unknown function (DUF997) SH05_RS20535 PF00474 Sodium:solute symporter family SH05_RS20545 PF01207 Dihydrouridine synthase (Dus) SH05_RS20550 PF02954 Bacterial regulatory protein, Fis family SH05_RS20555 PF01555 DNA methylase SH05_RS20560 PF10831 Protein of unknown function (DUF2556) SH05_RS20565 PF00440 Bacterial regulatory proteins, tetR family SH05_RS20565 PF08361 MAATS-type transcriptional repressor, C-terminal region SH05_RS20570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS20570 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS20575 PF00873 AcrB/AcrD/AcrF family SH05_RS20590 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH05_RS20595 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS20600 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS20605 PF00005 ABC transporter SH05_RS20645 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS20650 PF07369 Protein of unknown function (DUF1488) SH05_RS20655 PF08501 Shikimate dehydrogenase substrate binding domain SH05_RS20655 PF01488 Shikimate / quinate 5-dehydrogenase SH05_RS20655 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH05_RS20660 PF01300 Telomere recombination SH05_RS20665 PF01396 Topoisomerase DNA binding C4 zinc finger SH05_RS20670 PF04361 Protein of unknown function (DUF494) SH05_RS20675 PF02481 DNA recombination-mediator protein A SH05_RS20675 PF17782 DprA winged helix domain SH05_RS20680 PF01327 Polypeptide deformylase SH05_RS20685 PF02911 Formyl transferase, C-terminal domain SH05_RS20685 PF00551 Formyl transferase SH05_RS20690 PF01029 NusB family SH05_RS20690 PF01189 16S rRNA methyltransferase RsmB/F SH05_RS20695 PF02254 TrkA-N domain SH05_RS20695 PF02080 TrkA-C domain SH05_RS20700 PF01741 Large-conductance mechanosensitive channel, MscL SH05_RS20705 PF03889 Alternative ribosome-rescue factor A SH05_RS20710 PF13411 MerR HTH family regulatory protein SH05_RS20715 PF09350 Domain of unknown function (DUF1992) SH05_RS20720 PF01196 Ribosomal protein L17 SH05_RS20725 PF01000 RNA polymerase Rpb3/RpoA insert domain SH05_RS20725 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SH05_RS20725 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SH05_RS20730 PF01479 S4 domain SH05_RS20730 PF00163 Ribosomal protein S4/S9 N-terminal domain SH05_RS20735 PF00411 Ribosomal protein S11 SH05_RS20740 PF00416 Ribosomal protein S13/S18 SH05_RS20745 PF00444 Ribosomal protein L36 SH05_RS20750 PF00344 SecY translocase SH05_RS20755 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SH05_RS20760 PF00327 Ribosomal protein L30p/L7e SH05_RS20765 PF03719 Ribosomal protein S5, C-terminal domain SH05_RS20765 PF00333 Ribosomal protein S5, N-terminal domain SH05_RS20770 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SH05_RS20775 PF00347 Ribosomal protein L6 SH05_RS20780 PF00410 Ribosomal protein S8 SH05_RS20785 PF00253 Ribosomal protein S14p/S29e SH05_RS20790 PF00281 Ribosomal protein L5 SH05_RS20790 PF00673 ribosomal L5P family C-terminus SH05_RS20795 PF00467 KOW motif SH05_RS20795 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SH05_RS20800 PF00238 Ribosomal protein L14p/L23e SH05_RS20805 PF00366 Ribosomal protein S17 SH05_RS20810 PF00831 Ribosomal L29 protein SH05_RS20815 PF00252 Ribosomal protein L16p/L10e SH05_RS20820 PF07650 KH domain SH05_RS20820 PF00189 Ribosomal protein S3, C-terminal domain SH05_RS20825 PF00237 Ribosomal protein L22p/L17e SH05_RS20830 PF00203 Ribosomal protein S19 SH05_RS20835 PF00181 Ribosomal Proteins L2, RNA binding domain SH05_RS20835 PF03947 Ribosomal Proteins L2, C-terminal domain SH05_RS20840 PF00276 Ribosomal protein L23 SH05_RS20845 PF00573 Ribosomal protein L4/L1 family SH05_RS20850 PF00297 Ribosomal protein L3 SH05_RS20855 PF00338 Ribosomal protein S10p/S20e SH05_RS20865 PF13401 AAA domain SH05_RS20865 PF01471 Putative peptidoglycan binding domain SH05_RS20870 PF11356 Type II secretion system protein C SH05_RS20875 PF00263 Bacterial type II and III secretion system protein SH05_RS20875 PF03958 Bacterial type II/III secretion system short domain SH05_RS20880 PF00437 Type II/IV secretion system protein SH05_RS20885 PF00482 Type II secretion system (T2SS), protein F SH05_RS20890 PF07963 Prokaryotic N-terminal methylation motif SH05_RS20890 PF08334 Type II secretion system (T2SS), protein G SH05_RS20895 PF07963 Prokaryotic N-terminal methylation motif SH05_RS20895 PF12019 Type II transport protein GspH SH05_RS20900 PF02501 Type II secretion system (T2SS), protein I SH05_RS20900 PF07963 Prokaryotic N-terminal methylation motif SH05_RS20905 PF07963 Prokaryotic N-terminal methylation motif SH05_RS20905 PF11612 Type II secretion system (T2SS), protein J SH05_RS20910 PF03934 Type II secretion system (T2SS), protein K SH05_RS20915 PF05134 Type II secretion system (T2SS), protein L SH05_RS20915 PF12693 GspL periplasmic domain SH05_RS20920 PF04612 Type II secretion system (T2SS), protein M SH05_RS20925 PF01478 Type IV leader peptidase family SH05_RS20930 PF00210 Ferritin-like domain SH05_RS20935 PF04324 BFD-like [2Fe-2S] binding domain SH05_RS20940 PF02839 Carbohydrate binding domain SH05_RS20945 PF03144 Elongation factor Tu domain 2 SH05_RS20945 PF03143 Elongation factor Tu C-terminal domain SH05_RS20945 PF00009 Elongation factor Tu GTP binding domain SH05_RS20950 PF00679 Elongation factor G C-terminus SH05_RS20950 PF03764 Elongation factor G, domain IV SH05_RS20950 PF00009 Elongation factor Tu GTP binding domain SH05_RS20950 PF03144 Elongation factor Tu domain 2 SH05_RS20950 PF14492 Elongation Factor G, domain II SH05_RS20955 PF00177 Ribosomal protein S7p/S5e SH05_RS20960 PF00164 Ribosomal protein S12/S23 SH05_RS20965 PF04077 DsrH like protein SH05_RS20970 PF02635 DsrE/DsrF-like family SH05_RS20975 PF02635 DsrE/DsrF-like family SH05_RS20980 PF08348 YheO-like PAS domain SH05_RS20980 PF13309 HTH domain SH05_RS20985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH05_RS20985 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH05_RS20990 PF04102 SlyX SH05_RS20995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH05_RS21000 PF09526 Probable metal-binding protein (DUF2387) SH05_RS21005 PF02254 TrkA-N domain SH05_RS21005 PF00999 Sodium/hydrogen exchanger family SH05_RS21010 PF02525 Flavodoxin-like fold SH05_RS21015 PF12848 ABC transporter SH05_RS21015 PF00005 ABC transporter SH05_RS21020 PF00561 alpha/beta hydrolase fold SH05_RS21025 PF06794 Uncharacterised protein family (UPF0270) SH05_RS21030 PF00485 Phosphoribulokinase / Uridine kinase family SH05_RS21035 PF02566 OsmC-like protein SH05_RS21045 PF00027 Cyclic nucleotide-binding domain SH05_RS21045 PF13545 Crp-like helix-turn-helix domain SH05_RS21050 PF12805 FUSC-like inner membrane protein yccS SH05_RS21055 PF00202 Aminotransferase class-III SH05_RS21060 PF00117 Glutamine amidotransferase class-I SH05_RS21065 PF02661 Fic/DOC family SH05_RS21070 PF10832 Protein of unknown function (DUF2559) SH05_RS21075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH05_RS21080 PF07690 Major Facilitator Superfamily SH05_RS21085 PF04324 BFD-like [2Fe-2S] binding domain SH05_RS21085 PF18267 Rubredoxin NAD+ reductase C-terminal domain SH05_RS21085 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS21085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH05_RS21085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH05_RS21090 PF13806 Rieske-like [2Fe-2S] domain SH05_RS21095 PF01226 Formate/nitrite transporter SH05_RS21100 PF10414 Sirohaem synthase dimerisation region SH05_RS21100 PF14824 Sirohaem biosynthesis protein central SH05_RS21100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH05_RS21105 PF13978 Protein of unknown function (DUF4223) SH05_RS21110 PF13520 Amino acid permease SH05_RS21115 PF01380 SIS domain SH05_RS21120 PF01261 Xylose isomerase-like TIM barrel SH05_RS21125 PF00294 pfkB family carbohydrate kinase SH05_RS21130 PF00392 Bacterial regulatory proteins, gntR family SH05_RS21130 PF07702 UTRA domain SH05_RS21135 PF00155 Aminotransferase class I and II SH05_RS21140 PF10797 Protein of unknown function SH05_RS21145 PF10941 Protein of unknown function DUF2620 SH05_RS21150 PF02126 Phosphotriesterase family SH05_RS21155 PF01676 Metalloenzyme superfamily SH05_RS21160 PF01168 Alanine racemase, N-terminal domain SH05_RS21170 PF14502 Helix-turn-helix domain SH05_RS21170 PF14503 YhfZ C-terminal domain SH05_RS21175 PF00579 tRNA synthetases class I (W and Y) SH05_RS21180 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS21185 PF00834 Ribulose-phosphate 3 epimerase family SH05_RS21190 PF02086 D12 class N6 adenine-specific DNA methyltransferase SH05_RS21195 PF05036 Sporulation related domain SH05_RS21200 PF01761 3-dehydroquinate synthase SH05_RS21205 PF01202 Shikimate kinase SH05_RS21210 PF00263 Bacterial type II and III secretion system protein SH05_RS21210 PF03958 Bacterial type II/III secretion system short domain SH05_RS21215 PF10748 DNA utilization proteins HofP SH05_RS21225 PF05137 Fimbrial assembly protein (PilN) SH05_RS21235 PF00905 Penicillin binding protein transpeptidase domain SH05_RS21235 PF17092 Penicillin-binding protein OB-like domain SH05_RS21235 PF00912 Transglycosylase SH05_RS21240 PF00293 NUDIX domain SH05_RS21245 PF07095 Intracellular growth attenuator protein IgaA SH05_RS21250 PF13419 Haloacid dehalogenase-like hydrolase SH05_RS21255 PF01479 S4 domain SH05_RS21260 PF01430 Hsp33 protein SH05_RS21265 PF13687 Domain of unknown function (DUF4153) SH05_RS21275 PF01293 Phosphoenolpyruvate carboxykinase SH05_RS21280 PF00672 HAMP domain SH05_RS21280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS21280 PF00512 His Kinase A (phospho-acceptor) domain SH05_RS21285 PF00072 Response regulator receiver domain SH05_RS21285 PF00486 Transcriptional regulatory protein, C terminal SH05_RS21290 PF01272 Transcription elongation factor, GreA/GreB, C-term SH05_RS21290 PF03449 Transcription elongation factor, N-terminal SH05_RS21295 PF09371 Tex-like protein N-terminal domain SH05_RS21295 PF00575 S1 RNA binding domain SH05_RS21295 PF16921 Tex protein YqgF-like domain SH05_RS21295 PF17674 HHH domain SH05_RS21300 PF04023 FeoA domain SH05_RS21305 PF02421 Ferrous iron transport protein B SH05_RS21305 PF07664 Ferrous iron transport protein B C terminus SH05_RS21305 PF07670 Nucleoside recognition SH05_RS21305 PF17910 FeoB cytosolic helical domain SH05_RS21310 PF09012 FeoC like transcriptional regulator SH05_RS21315 PF04754 Putative transposase, YhgA-like SH05_RS21320 PF00561 alpha/beta hydrolase fold SH05_RS21325 PF00156 Phosphoribosyl transferase domain SH05_RS21330 PF01521 Iron-sulphur cluster biosynthesis SH05_RS21330 PF01106 NifU-like domain SH05_RS21335 PF02447 GntP family permease SH05_RS21340 PF02446 4-alpha-glucanotransferase SH05_RS21345 PF00343 Carbohydrate phosphorylase SH05_RS21350 PF00196 Bacterial regulatory proteins, luxR family SH05_RS21350 PF17874 MalT-like TPR region SH05_RS21355 PF01137 RNA 3'-terminal phosphate cyclase SH05_RS21355 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain SH05_RS21360 PF01139 tRNA-splicing ligase RtcB SH05_RS21365 PF00158 Sigma-54 interaction domain SH05_RS21365 PF06956 Regulator of RNA terminal phosphate cyclase SH05_RS21370 PF00455 DeoR C terminal sensor domain SH05_RS21370 PF08220 DeoR-like helix-turn-helix domain SH05_RS21375 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease SH05_RS21375 PF01694 Rhomboid family SH05_RS21380 PF00581 Rhodanese-like domain SH05_RS21385 PF01266 FAD dependent oxidoreductase SH05_RS21385 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SH05_RS21395 PF00343 Carbohydrate phosphorylase SH05_RS21400 PF00534 Glycosyl transferases group 1 SH05_RS21400 PF08323 Starch synthase catalytic domain SH05_RS21405 PF00483 Nucleotidyl transferase SH05_RS21410 PF00128 Alpha amylase, catalytic domain SH05_RS21410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH05_RS21410 PF18390 Glycogen debranching enzyme C-terminal domain SH05_RS21415 PF00128 Alpha amylase, catalytic domain SH05_RS21415 PF02806 Alpha amylase, C-terminal all-beta domain SH05_RS21415 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH05_RS21420 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH05_RS21420 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH05_RS21425 PF01914 MarC family integral membrane protein SH05_RS21430 PF02447 GntP family permease SH05_RS21435 PF01202 Shikimate kinase SH05_RS21440 PF00356 Bacterial regulatory proteins, lacI family SH05_RS21440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH05_RS21445 PF02678 Pirin SH05_RS21445 PF17954 Quercetinase C-terminal cupin domain SH05_RS21450 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH05_RS21450 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH05_RS21455 PF00583 Acetyltransferase (GNAT) family SH05_RS21460 PF05638 Type VI secretion system effector, Hcp SH05_RS21470 PF03400 IS1 transposase SH05_RS21475 PF15567 Immunity protein 35 SH05_RS21485 PF10956 Protein of unknown function (DUF2756) SH05_RS21490 PF03009 Glycerophosphoryl diester phosphodiesterase family SH05_RS21495 PF00005 ABC transporter SH05_RS21495 PF17912 MalK OB fold domain SH05_RS21500 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS21505 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS21510 PF13416 Bacterial extracellular solute-binding protein SH05_RS21520 PF00005 ABC transporter SH05_RS21525 PF00005 ABC transporter SH05_RS21525 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH05_RS21530 PF11862 Domain of unknown function (DUF3382) SH05_RS21530 PF02653 Branched-chain amino acid transport system / permease component SH05_RS21535 PF02653 Branched-chain amino acid transport system / permease component SH05_RS21540 PF13458 Periplasmic binding protein SH05_RS21545 PF12568 Acetyltransferase (GNAT) domain, PanZ SH05_RS21555 PF13458 Periplasmic binding protein SH05_RS21560 PF04542 Sigma-70 region 2 SH05_RS21560 PF04545 Sigma-70, region 4 SH05_RS21565 PF02687 FtsX-like permease family SH05_RS21565 PF18075 FtsX extracellular domain SH05_RS21570 PF00005 ABC transporter SH05_RS21575 PF02881 SRP54-type protein, helical bundle domain SH05_RS21575 PF00448 SRP54-type protein, GTPase domain SH05_RS21585 PF06611 Protein of unknown function (DUF1145) SH05_RS21590 PF10694 Protein of unknown function (DUF2500) SH05_RS21595 PF07947 YhhN family SH05_RS21600 PF00403 Heavy-metal-associated domain SH05_RS21605 PF01206 Sulfurtransferase TusA SH05_RS21610 PF02592 Putative vitamin uptake transporter SH05_RS21615 PF08786 DcrB SH05_RS21620 PF07690 Major Facilitator Superfamily SH05_RS21625 PF01594 AI-2E family transporter SH05_RS21630 PF01648 4'-phosphopantetheinyl transferase superfamily SH05_RS21635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS21640 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS21645 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS21650 PF00005 ABC transporter SH05_RS21655 PF00005 ABC transporter SH05_RS21660 PF01402 Ribbon-helix-helix protein, copG family SH05_RS21660 PF08753 NikR C terminal nickel binding domain SH05_RS21665 PF14220 Domain of unknown function (DUF4329) SH05_RS21665 PF03527 RHS protein SH05_RS21665 PF05593 RHS Repeat SH05_RS21670 PF15631 NTF2 fold immunity protein SH05_RS21680 PF13808 DDE_Tnp_1-associated SH05_RS21680 PF01609 Transposase DDE domain SH05_RS21690 PF00005 ABC transporter SH05_RS21695 PF13533 Biotin-lipoyl like SH05_RS21700 PF13258 Domain of unknown function (DUF4049) SH05_RS21720 PF10951 Protein of unknown function (DUF2776) SH05_RS21730 PF01384 Phosphate transporter family SH05_RS21735 PF10625 Universal stress protein B (UspB) SH05_RS21740 PF00582 Universal stress protein family SH05_RS21745 PF00854 POT family SH05_RS21750 PF04445 Putative SAM-dependent methyltransferase SH05_RS21755 PF01432 Peptidase family M3 SH05_RS21760 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SH05_RS21765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH05_RS21765 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH05_RS21780 PF01022 Bacterial regulatory protein, arsR family SH05_RS21785 PF02040 Arsenical pump membrane protein SH05_RS21790 PF03960 ArsC family SH05_RS21800 PF01609 Transposase DDE domain SH05_RS21800 PF05598 Transposase domain (DUF772) SH05_RS21810 PF03843 Outer membrane lipoprotein Slp family SH05_RS21815 PF00196 Bacterial regulatory proteins, luxR family SH05_RS21820 PF02308 MgtC family SH05_RS21825 PF06411 HdeA/HdeB family SH05_RS21830 PF06411 HdeA/HdeB family SH05_RS21835 PF03729 Short repeat of unknown function (DUF308) SH05_RS21840 PF00196 Bacterial regulatory proteins, luxR family SH05_RS21850 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS21850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS21855 PF00873 AcrB/AcrD/AcrF family SH05_RS21860 PF12833 Helix-turn-helix domain SH05_RS21865 PF12833 Helix-turn-helix domain SH05_RS21870 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH05_RS21875 PF00034 Cytochrome c SH05_RS21875 PF14376 Haem-binding domain SH05_RS21875 PF03150 Di-haem cytochrome c peroxidase SH05_RS21880 PF01204 Trehalase SH05_RS21885 PF00196 Bacterial regulatory proteins, luxR family SH05_RS21890 PF03466 LysR substrate binding domain SH05_RS21890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS21895 PF03631 Virulence factor BrkB SH05_RS21900 PF07690 Major Facilitator Superfamily SH05_RS21900 PF00083 Sugar (and other) transporter SH05_RS21905 PF05170 AsmA family SH05_RS21910 PF00563 EAL domain SH05_RS21920 PF00294 pfkB family carbohydrate kinase SH05_RS21925 PF00675 Insulinase (Peptidase family M16) SH05_RS21925 PF05193 Peptidase M16 inactive domain SH05_RS21930 PF00375 Sodium:dicarboxylate symporter family SH05_RS21935 PF00990 Diguanylate cyclase, GGDEF domain SH05_RS21935 PF17154 Gammaproteobacterial periplasmic sensor domain SH05_RS21935 PF00563 EAL domain SH05_RS21935 PF00672 HAMP domain SH05_RS21940 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) SH05_RS21945 PF01270 Glycosyl hydrolases family 8 SH05_RS21950 PF03170 Bacterial cellulose synthase subunit SH05_RS21955 PF03552 Cellulose synthase SH05_RS21955 PF00535 Glycosyl transferase family 2 SH05_RS21955 PF07238 PilZ domain SH05_RS21960 PF06564 Cellulose biosynthesis protein BcsQ SH05_RS21965 PF10945 Cellulose biosynthesis protein BcsR SH05_RS21970 PF01609 Transposase DDE domain SH05_RS21970 PF05598 Transposase domain (DUF772) SH05_RS21975 PF10995 Cellulose biosynthesis GIL SH05_RS21980 PF11120 Cellulose biosynthesis protein BcsF SH05_RS21985 PF11658 Cellulose biosynthesis protein BcsG SH05_RS21990 PF13940 Toxin Ldr, type I toxin-antitoxin system SH05_RS22000 PF03222 Tryptophan/tyrosine permease family SH05_RS22005 PF00005 ABC transporter SH05_RS22005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH05_RS22010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH05_RS22010 PF00005 ABC transporter SH05_RS22015 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS22015 PF12911 N-terminal TM domain of oligopeptide transport permease C SH05_RS22020 PF00528 Binding-protein-dependent transport system inner membrane component SH05_RS22030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH05_RS22045 PF08019 Phosphoethanolamine transferase EptA/EptB SH05_RS22045 PF00884 Sulfatase SH05_RS22050 PF07690 Major Facilitator Superfamily SH05_RS22055 PF03797 Autotransporter beta-domain SH05_RS22060 PF03352 Methyladenine glycosylase SH05_RS22065 PF00583 Acetyltransferase (GNAT) family SH05_RS22070 PF01568 Molydopterin dinucleotide binding domain SH05_RS22070 PF00384 Molybdopterin oxidoreductase SH05_RS22070 PF18364 Molybdopterin oxidoreductase N-terminal domain SH05_RS22075 PF00691 OmpA family SH05_RS22075 PF13488 Glycine zipper SH05_RS22080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH05_RS22080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH05_RS22085 PF11254 Protein of unknown function (DUF3053) SH05_RS22090 PF01381 Helix-turn-helix SH05_RS22095 PF00313 'Cold-shock' DNA-binding domain SH05_RS22100 PF01848 Hok/gef family SH05_RS22110 PF13333 Integrase core domain SH05_RS22110 PF00665 Integrase core domain SH05_RS22110 PF13276 HTH-like domain SH05_RS22115 PF02092 Glycyl-tRNA synthetase beta subunit SH05_RS22115 PF05746 DALR anticodon binding domain SH05_RS22120 PF02091 Glycyl-tRNA synthetase alpha subunit SH05_RS22125 PF13983 YsaB-like lipoprotein SH05_RS22130 PF01757 Acyltransferase family SH05_RS22135 PF05360 yiaA/B two helix domain SH05_RS22140 PF05360 yiaA/B two helix domain SH05_RS22145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH05_RS22145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH05_RS22155 PF13407 Periplasmic binding protein domain SH05_RS22160 PF03400 IS1 transposase SH05_RS22165 PF13407 Periplasmic binding protein domain SH05_RS22170 PF00005 ABC transporter SH05_RS22175 PF02653 Branched-chain amino acid transport system / permease component SH05_RS22180 PF12833 Helix-turn-helix domain SH05_RS22185 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH05_RS22190 PF00128 Alpha amylase, catalytic domain SH05_RS22195 PF00155 Aminotransferase class I and II SH05_RS22205 PF13247 4Fe-4S dicluster domain SH05_RS22210 PF01614 Bacterial transcriptional regulator SH05_RS22210 PF09339 IclR helix-turn-helix domain SH05_RS22215 PF02615 Malate/L-lactate dehydrogenase SH05_RS22220 PF04074 YhcH/YjgK/YiaL SH05_RS22225 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SH05_RS22230 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SH05_RS22235 PF03480 Bacterial extracellular solute-binding protein, family 7 SH05_RS22240 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH05_RS22240 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH05_RS22245 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH05_RS22250 PF01261 Xylose isomerase-like TIM barrel SH05_RS22255 PF00596 Class II Aldolase and Adducin N-terminal domain SH05_RS22260 PF06629 MltA-interacting protein MipA SH05_RS22265 PF03466 LysR substrate binding domain SH05_RS22265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH05_RS22270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS22270 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS22275 PF11742 Protein of unknown function (DUF3302) SH05_RS22285 PF00171 Aldehyde dehydrogenase family SH05_RS22290 PF00465 Iron-containing alcohol dehydrogenase SH05_RS22295 PF09107 Elongation factor SelB, winged helix SH05_RS22295 PF09106 Elongation factor SelB, winged helix SH05_RS22295 PF03144 Elongation factor Tu domain 2 SH05_RS22295 PF00009 Elongation factor Tu GTP binding domain SH05_RS22300 PF12390 Selenocysteine synthase N terminal SH05_RS22300 PF03841 L-seryl-tRNA selenium transferase SH05_RS22305 PF00043 Glutathione S-transferase, C-terminal domain SH05_RS22305 PF13417 Glutathione S-transferase, N-terminal domain SH05_RS22310 PF03527 RHS protein SH05_RS22310 PF15606 Bacterial toxin 34 SH05_RS22310 PF05593 RHS Repeat SH05_RS22315 PF03130 PBS lyase HEAT-like repeat SH05_RS22320 PF03527 RHS protein SH05_RS22335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH05_RS22335 PF00529 HlyD membrane-fusion protein of T1SS SH05_RS22340 PF11742 Protein of unknown function (DUF3302) SH05_RS22350 PF08125 Mannitol dehydrogenase C-terminal domain SH05_RS22350 PF01232 Mannitol dehydrogenase Rossmann domain SH05_RS22355 PF05068 Mannitol repressor SH05_RS22365 PF10928 Protein of unknown function (DUF2810) SH05_RS22370 PF02652 L-lactate permease SH05_RS22375 PF07729 FCD domain SH05_RS22375 PF00392 Bacterial regulatory proteins, gntR family SH05_RS22380 PF01070 FMN-dependent dehydrogenase SH05_RS22385 PF00588 SpoU rRNA Methylase family SH05_RS22390 PF06426 Serine acetyltransferase, N-terminal SH05_RS22390 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS22395 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SH05_RS22395 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SH05_RS22400 PF02556 Preprotein translocase subunit SecB SH05_RS22405 PF00462 Glutaredoxin SH05_RS22410 PF00581 Rhodanese-like domain SH05_RS22420 PF01676 Metalloenzyme superfamily SH05_RS22420 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SH05_RS22425 PF01551 Peptidase family M23 SH05_RS22430 PF04748 Divergent polysaccharide deacetylase SH05_RS22435 PF00535 Glycosyl transferase family 2 SH05_RS22440 PF00107 Zinc-binding dehydrogenase SH05_RS22440 PF08240 Alcohol dehydrogenase GroES-like domain SH05_RS22445 PF00155 Aminotransferase class I and II SH05_RS22450 PF09612 Bacterial protein of unknown function (HtrL_YibB) SH05_RS22455 PF01370 NAD dependent epimerase/dehydratase family SH05_RS22460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH05_RS22465 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH05_RS22470 PF04932 O-Antigen ligase SH05_RS22475 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH05_RS22485 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) SH05_RS22490 PF08437 Glycosyl transferase family 8 C-terminal SH05_RS22490 PF01501 Glycosyl transferase family 8 SH05_RS22495 PF08437 Glycosyl transferase family 8 C-terminal SH05_RS22495 PF01501 Glycosyl transferase family 8 SH05_RS22500 PF13439 Glycosyltransferase Family 4 SH05_RS22500 PF00534 Glycosyl transferases group 1 SH05_RS22515 PF00534 Glycosyl transferases group 1 SH05_RS22515 PF13439 Glycosyltransferase Family 4 SH05_RS22520 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH05_RS22525 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SH05_RS22530 PF01467 Cytidylyltransferase-like SH05_RS22535 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH05_RS22535 PF06827 Zinc finger found in FPG and IleRS SH05_RS22535 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH05_RS22540 PF00471 Ribosomal protein L33 SH05_RS22545 PF00830 Ribosomal L28 family SH05_RS22550 PF04002 RadC-like JAB domain SH05_RS22555 PF02441 Flavoprotein SH05_RS22555 PF04127 DNA / pantothenate metabolism flavoprotein SH05_RS22560 PF00692 dUTPase SH05_RS22565 PF00440 Bacterial regulatory proteins, tetR family SH05_RS22570 PF00156 Phosphoribosyl transferase domain SH05_RS22575 PF01138 3' exoribonuclease family, domain 1 SH05_RS22575 PF03725 3' exoribonuclease family, domain 2 SH05_RS22580 PF08340 Domain of unknown function (DUF1732) SH05_RS22580 PF03755 YicC-like family, N-terminal region SH05_RS22590 PF03458 UPF0126 domain SH05_RS22595 PF01653 NAD-dependent DNA ligase adenylation domain SH05_RS22595 PF03120 NAD-dependent DNA ligase OB-fold domain SH05_RS22600 PF00625 Guanylate kinase SH05_RS22605 PF01192 RNA polymerase Rpb6 SH05_RS22610 PF04607 Region found in RelA / SpoT proteins SH05_RS22610 PF02824 TGS domain SH05_RS22610 PF13291 ACT domain SH05_RS22615 PF12105 SpoU, rRNA methylase, C-terminal SH05_RS22615 PF00588 SpoU rRNA Methylase family SH05_RS22620 PF17191 RecG wedge domain SH05_RS22620 PF00271 Helicase conserved C-terminal domain SH05_RS22620 PF00270 DEAD/DEAH box helicase SH05_RS22625 PF03616 Sodium/glutamate symporter SH05_RS22630 PF00860 Permease family SH05_RS22635 PF05170 AsmA family SH05_RS22640 PF01055 Glycosyl hydrolases family 31 SH05_RS22640 PF13802 Galactose mutarotase-like SH05_RS22660 PF07690 Major Facilitator Superfamily SH05_RS22665 PF00892 EamA-like transporter family SH05_RS22670 PF03180 NLPA lipoprotein SH05_RS22685 PF07690 Major Facilitator Superfamily SH05_RS22690 PF06711 Protein of unknown function (DUF1198) SH05_RS22695 PF00860 Permease family SH05_RS22700 PF13382 Adenine deaminase C-terminal domain SH05_RS22700 PF01979 Amidohydrolase family SH05_RS22705 PF07690 Major Facilitator Superfamily SH05_RS22710 PF07690 Major Facilitator Superfamily SH05_RS22715 PF05231 MASE1 SH05_RS22715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS22715 PF07730 Histidine kinase SH05_RS22720 PF00196 Bacterial regulatory proteins, luxR family SH05_RS22720 PF00072 Response regulator receiver domain SH05_RS22725 PF01842 ACT domain SH05_RS22730 PF00205 Thiamine pyrophosphate enzyme, central domain SH05_RS22730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH05_RS22730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH05_RS22735 PF08049 IlvB leader peptide SH05_RS22750 PF13939 Toxin TisB, type I toxin-antitoxin system SH05_RS22755 PF07690 Major Facilitator Superfamily SH05_RS22765 PF02656 Domain of unknown function (DUF202) SH05_RS22770 PF02656 Domain of unknown function (DUF202) SH05_RS22780 PF16347 Domain of unknown function (DUF4976) SH05_RS22780 PF00884 Sulfatase SH05_RS22785 PF00474 Sodium:solute symporter family SH05_RS22790 PF02311 AraC-like ligand binding domain SH05_RS22790 PF12833 Helix-turn-helix domain SH05_RS22810 PF00392 Bacterial regulatory proteins, gntR family SH05_RS22810 PF07702 UTRA domain SH05_RS22815 PF06826 Predicted Permease Membrane Region SH05_RS22815 PF02080 TrkA-C domain SH05_RS22820 PF00011 Hsp20/alpha crystallin family SH05_RS22825 PF00011 Hsp20/alpha crystallin family SH05_RS22830 PF07119 Protein of unknown function (DUF1375) SH05_RS22835 PF12566 Protein of unknown function (DUF3748) SH05_RS22835 PF07676 WD40-like Beta Propeller Repeat SH05_RS22840 PF01494 FAD binding domain SH05_RS22845 PF07690 Major Facilitator Superfamily SH05_RS22850 PF13378 Enolase C-terminal domain-like SH05_RS22850 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH05_RS22855 PF01081 KDPG and KHG aldolase SH05_RS22860 PF05035 2-keto-3-deoxy-galactonokinase SH05_RS22865 PF00392 Bacterial regulatory proteins, gntR family SH05_RS22865 PF07729 FCD domain SH05_RS22880 PF06078 Bacterial protein of unknown function (DUF937) SH05_RS22890 PF01751 Toprim domain SH05_RS22890 PF00986 DNA gyrase B subunit, carboxyl terminus SH05_RS22890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH05_RS22890 PF00204 DNA gyrase B SH05_RS22890 PF18053 DNA gyrase B subunit insert domain SH05_RS22895 PF02463 RecF/RecN/SMC N terminal domain SH05_RS22900 PF02768 DNA polymerase III beta subunit, C-terminal domain SH05_RS22900 PF02767 DNA polymerase III beta subunit, central domain SH05_RS22900 PF00712 DNA polymerase III beta subunit, N-terminal domain SH05_RS22905 PF11638 DnaA N-terminal domain SH05_RS22905 PF00308 Bacterial dnaA protein SH05_RS22905 PF08299 Bacterial dnaA protein helix-turn-helix SH05_RS22975 PF07151 Protein of unknown function (DUF1391) SH05_RS23000 PF03400 IS1 transposase SH05_RS23050 PF03797 Autotransporter beta-domain SH05_RS23055 PF03797 Autotransporter beta-domain SH05_RS23100 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH05_RS23100 PF03797 Autotransporter beta-domain SH05_RS23100 PF03212 Pertactin SH05_RS23125 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH05_RS23390 PF12759 InsA C-terminal domain SH05_RS23390 PF03811 InsA N-terminal domain SH05_RS23410 PF12759 InsA C-terminal domain SH05_RS23410 PF03811 InsA N-terminal domain SH05_RS23455 PF12759 InsA C-terminal domain SH05_RS23455 PF03811 InsA N-terminal domain SH05_RS23545 PF06174 Protein of unknown function (DUF987) SH05_RS23550 PF13280 WYL domain SH05_RS23550 PF08220 DeoR-like helix-turn-helix domain SH05_RS23570 PF13936 Helix-turn-helix domain SH05_RS23570 PF00665 Integrase core domain SH05_RS23575 PF13148 Protein of unknown function (DUF3987) SH05_RS23580 PF03811 InsA N-terminal domain SH05_RS23580 PF12759 InsA C-terminal domain SH05_RS23650 PF00132 Bacterial transferase hexapeptide (six repeats) SH05_RS23730 PF07471 Phage DNA packaging protein Nu1 SH05_RS23735 PF12759 InsA C-terminal domain SH05_RS23735 PF03811 InsA N-terminal domain SH05_RS23890 PF12759 InsA C-terminal domain SH05_RS23890 PF03811 InsA N-terminal domain SH05_RS23915 PF03239 Iron permease FTR1 family SH05_RS23955 PF00180 Isocitrate/isopropylmalate dehydrogenase SH05_RS24005 PF01609 Transposase DDE domain SH05_RS24005 PF13006 Insertion element 4 transposase N-terminal SH05_RS24015 PF08255 Trp-operon Leader Peptide SH05_RS24035 PF00589 Phage integrase family SH05_RS24035 PF12167 Arm DNA-binding domain SH05_RS24055 PF13505 Outer membrane protein beta-barrel domain SH05_RS24060 PF07484 Phage Tail Collar Domain SH05_RS24060 PF03335 Phage tail fibre repeat SH05_RS24060 PF08400 Prophage tail fibre N-terminal SH05_RS24075 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH05_RS24075 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH05_RS24115 PF13808 DDE_Tnp_1-associated SH05_RS24115 PF01609 Transposase DDE domain SH05_RS24320 PF07715 TonB-dependent Receptor Plug Domain SH05_RS24330 PF13817 IS66 C-terminal element SH05_RS24330 PF13007 Transposase C of IS166 homeodomain SH05_RS24330 PF13005 zinc-finger binding domain of transposase IS66 SH05_RS24330 PF03050 Transposase IS66 family SH05_RS24375 PF04606 Ogr/Delta-like zinc finger SH05_RS24385 PF13569 Domain of unknown function (DUF4132) SH05_RS24400 PF03811 InsA N-terminal domain SH05_RS24400 PF12759 InsA C-terminal domain SH05_RS24515 PF06006 Bacterial protein of unknown function (DUF905) SH05_RS24520 PF06174 Protein of unknown function (DUF987) SH05_RS24700 PF00871 Acetokinase family SH05_RS24760 PF01261 Xylose isomerase-like TIM barrel SH05_RS24790 PF12759 InsA C-terminal domain SH05_RS24790 PF03811 InsA N-terminal domain SH05_RS24850 PF03811 InsA N-terminal domain SH05_RS24850 PF12759 InsA C-terminal domain