SH05_RS00015 SM01234 SH05_RS00015 SH05_RS00110 SM01061 CAT RNA binding domain SH05_RS00120 SM00382 ATPases associated with a variety of cellular activities SH05_RS00155 SM00382 ATPases associated with a variety of cellular activities SH05_RS00200 SM01228 SH05_RS00200 SH05_RS00210 SM00344 helix_turn_helix ASNC type SH05_RS00220 SM00327 von Willebrand factor (vWF) type A domain SH05_RS00225 SM00382 ATPases associated with a variety of cellular activities SH05_RS00240 SM00382 ATPases associated with a variety of cellular activities SH05_RS00260 SM00354 helix_turn _helix lactose operon repressor SH05_RS00270 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS00270 SM00895 SH05_RS00270 SH05_RS00315 SM00382 ATPases associated with a variety of cellular activities SH05_RS00380 SM00487 DEAD-like helicases superfamily SH05_RS00380 SM00490 helicase superfamily c-terminal domain SH05_RS00395 SM00357 Cold shock protein domain SH05_RS00395 SM00382 ATPases associated with a variety of cellular activities SH05_RS00395 SM00959 Rho termination factor, N-terminal domain SH05_RS00420 SM00984 UDP binding domain SH05_RS00525 SM01219 SH05_RS00525 SH05_RS00600 SM00341 Helicase and RNase D C-terminal SH05_RS00600 SM00487 DEAD-like helicases superfamily SH05_RS00600 SM00490 helicase superfamily c-terminal domain SH05_RS00600 SM00956 SH05_RS00600 SH05_RS00690 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH05_RS00790 SM00563 Phosphate acyltransferases SH05_RS00800 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH05_RS00800 SM00474 3'-5' exonuclease SH05_RS00800 SM00475 5'-3' exonuclease SH05_RS00800 SM00482 DNA polymerase A domain SH05_RS00815 SM00729 Elongator protein 3, MiaB family, Radical SAM SH05_RS00825 SM00382 ATPases associated with a variety of cellular activities SH05_RS00825 SM00448 cheY-homologous receiver domain SH05_RS00830 SM00091 PAS domain SH05_RS00830 SM00387 Histidine kinase-like ATPases SH05_RS00830 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS00835 SM01230 SH05_RS00835 SH05_RS00850 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS00850 SM00866 SH05_RS00850 SH05_RS00895 SM01133 SH05_RS00895 SH05_RS00910 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS00910 SM01134 SH05_RS00910 SH05_RS00970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS01010 SM01007 Class II Aldolase and Adducin N-terminal domain SH05_RS01030 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS01035 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS01065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS01065 SM00387 Histidine kinase-like ATPases SH05_RS01065 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS01070 SM00448 cheY-homologous receiver domain SH05_RS01070 SM00862 Transcriptional regulatory protein, C terminal SH05_RS01160 SM00382 ATPases associated with a variety of cellular activities SH05_RS01160 SM01086 C-terminal, D2-small domain, of ClpB protein SH05_RS01175 SM00354 helix_turn _helix lactose operon repressor SH05_RS01180 SM00487 DEAD-like helicases superfamily SH05_RS01180 SM00490 helicase superfamily c-terminal domain SH05_RS01280 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS01305 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH05_RS01425 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH05_RS01425 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH05_RS01430 SM00649 Ribosomal protein L11/L12 SH05_RS01455 SM00663 RNA polymerase I subunit A N-terminus SH05_RS01465 SM00876 Biotin and Thiamin Synthesis associated domain SH05_RS01520 SM00411 bacterial (prokaryotic) histone like domain SH05_RS01535 SM00387 Histidine kinase-like ATPases SH05_RS01535 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS01540 SM00382 ATPases associated with a variety of cellular activities SH05_RS01540 SM00448 cheY-homologous receiver domain SH05_RS01545 SM01209 SH05_RS01545 SH05_RS01545 SM01210 SH05_RS01545 SH05_RS01550 SM00798 AICARFT/IMPCHase bienzyme SH05_RS01550 SM00851 MGS-like domain SH05_RS01615 SM00248 ankyrin repeats SH05_RS01620 SM00346 helix_turn_helix isocitrate lyase regulation SH05_RS01625 SM01018 B12 binding domain SH05_RS01640 SM00363 S4 RNA-binding domain SH05_RS01730 SM00382 ATPases associated with a variety of cellular activities SH05_RS01765 SM00563 Phosphate acyltransferases SH05_RS01815 SM00829 Enoylreductase SH05_RS01820 SM00382 ATPases associated with a variety of cellular activities SH05_RS01825 SM01005 Alanine racemase, C-terminal domain SH05_RS01870 SM00052 Putative diguanylate phosphodiesterase SH05_RS01875 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS01880 SM00422 helix_turn_helix, mercury resistance SH05_RS01945 SM00028 Tetratricopeptide repeats SH05_RS01955 SM00671 Sel1-like repeats. SH05_RS01965 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS01990 SM00849 Metallo-beta-lactamase superfamily SH05_RS02010 SM00382 ATPases associated with a variety of cellular activities SH05_RS02045 SM00072 Guanylate kinase homologues. SH05_RS02055 SM00382 ATPases associated with a variety of cellular activities SH05_RS02060 SM00382 ATPases associated with a variety of cellular activities SH05_RS02085 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS02085 SM00866 SH05_RS02085 SH05_RS02100 SM00382 ATPases associated with a variety of cellular activities SH05_RS02135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS02135 SM00387 Histidine kinase-like ATPases SH05_RS02135 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS02140 SM00448 cheY-homologous receiver domain SH05_RS02140 SM00862 Transcriptional regulatory protein, C terminal SH05_RS02155 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS02165 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS02205 SM00448 cheY-homologous receiver domain SH05_RS02210 SM00091 PAS domain SH05_RS02210 SM00387 Histidine kinase-like ATPases SH05_RS02255 SM00862 Transcriptional regulatory protein, C terminal SH05_RS02300 SM00883 Chaperonin 10 Kd subunit SH05_RS02325 SM00841 Elongation factor P, C-terminal SH05_RS02325 SM01185 SH05_RS02325 SH05_RS02410 SM00479 SH05_RS02410 SH05_RS02445 SM00646 SH05_RS02445 SH05_RS02450 SM00853 MutL C terminal dimerisation domain SH05_RS02450 SM01340 SH05_RS02450 SH05_RS02470 SM00244 prohibitin homologues SH05_RS02475 SM00244 prohibitin homologues SH05_RS02485 SM00788 Adenylosuccinate synthetase SH05_RS02495 SM00316 Ribosomal protein S1-like RNA-binding domain SH05_RS02495 SM00357 Cold shock protein domain SH05_RS02495 SM00955 SH05_RS02495 SH05_RS02500 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH05_RS02555 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS02555 SM01134 SH05_RS02555 SH05_RS02580 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH05_RS02590 SM01007 Class II Aldolase and Adducin N-terminal domain SH05_RS02695 SM01091 Transporter associated domain SH05_RS02725 SM00966 SpoVT / AbrB like domain SH05_RS02745 SM00382 ATPases associated with a variety of cellular activities SH05_RS02795 SM00642 Alpha-amylase domain SH05_RS02805 SM00354 helix_turn _helix lactose operon repressor SH05_RS02810 SM00831 Cation transporter/ATPase, N-terminus SH05_RS02845 SM00822 SH05_RS02845 SH05_RS02915 SM00354 helix_turn _helix lactose operon repressor SH05_RS02940 SM00829 Enoylreductase SH05_RS03045 SM00382 ATPases associated with a variety of cellular activities SH05_RS03065 SM00965 Secretin and TonB N terminus short domain SH05_RS03115 SM01130 SH05_RS03115 SH05_RS03120 SM00346 helix_turn_helix isocitrate lyase regulation SH05_RS03125 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS03125 SM01134 SH05_RS03125 SH05_RS03295 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS03295 SM00895 SH05_RS03295 SH05_RS03390 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS03415 SM00382 ATPases associated with a variety of cellular activities SH05_RS03435 SM00487 DEAD-like helicases superfamily SH05_RS03435 SM00490 helicase superfamily c-terminal domain SH05_RS03455 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH05_RS03475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH05_RS03475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS03475 SM00319 Homologues of the ligand binding domain of Tar SH05_RS03485 SM00895 SH05_RS03485 SH05_RS03490 SM00829 Enoylreductase SH05_RS03505 SM00382 ATPases associated with a variety of cellular activities SH05_RS03525 SM00421 helix_turn_helix, Lux Regulon SH05_RS03530 SM00421 helix_turn_helix, Lux Regulon SH05_RS03585 SM00749 bacterial OsmY and nodulation domain SH05_RS03620 SM01133 SH05_RS03620 SH05_RS03625 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SH05_RS03660 SM00382 ATPases associated with a variety of cellular activities SH05_RS03665 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS03675 SM00382 ATPases associated with a variety of cellular activities SH05_RS03695 SM00855 Phosphoglycerate mutase family SH05_RS03700 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS03700 SM00871 Bacterial transcription activator, effector binding domain SH05_RS03710 SM00448 cheY-homologous receiver domain SH05_RS03710 SM00862 Transcriptional regulatory protein, C terminal SH05_RS03715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS03715 SM00387 Histidine kinase-like ATPases SH05_RS03715 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS03725 SM00448 cheY-homologous receiver domain SH05_RS03725 SM00862 Transcriptional regulatory protein, C terminal SH05_RS03785 SM00852 Probable molybdopterin binding domain SH05_RS03810 SM00271 DnaJ molecular chaperone homology domain SH05_RS03850 SM00904 Riboflavin kinase SH05_RS03895 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SH05_RS03900 SM00851 MGS-like domain SH05_RS03900 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH05_RS03945 SM00893 Electron transfer flavoprotein domain SH05_RS03950 SM00893 Electron transfer flavoprotein domain SH05_RS03995 SM00650 Ribosomal RNA adenine dimethylases SH05_RS04015 SM00271 DnaJ molecular chaperone homology domain SH05_RS04030 SM00487 DEAD-like helicases superfamily SH05_RS04030 SM00490 helicase superfamily c-terminal domain SH05_RS04035 SM00486 DNA polymerase type-B family SH05_RS04040 SM01007 Class II Aldolase and Adducin N-terminal domain SH05_RS04055 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS04065 SM00382 ATPases associated with a variety of cellular activities SH05_RS04105 SM01329 SH05_RS04105 SH05_RS04110 SM00917 LeuA allosteric (dimerisation) domain SH05_RS04140 SM00354 helix_turn _helix lactose operon repressor SH05_RS04210 SM00842 Cell division protein FtsA SH05_RS04215 SM00864 Tubulin/FtsZ family, GTPase domain SH05_RS04215 SM00865 Tubulin/FtsZ family, C-terminal domain SH05_RS04230 SM00957 SecA DEAD-like domain SH05_RS04230 SM00958 SecA preprotein cross-linking domain SH05_RS04260 SM01240 SH05_RS04260 SH05_RS04290 SM00644 SH05_RS04290 SH05_RS04305 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS04305 SM00895 SH05_RS04305 SH05_RS04360 SM00564 beta-propeller repeat SH05_RS04370 SM00947 Carbonic anhydrase SH05_RS04375 SM00382 ATPases associated with a variety of cellular activities SH05_RS04480 SM00487 DEAD-like helicases superfamily SH05_RS04480 SM00490 helicase superfamily c-terminal domain SH05_RS04480 SM00847 Helicase associated domain (HA2) Add an annotation SH05_RS04515 SM00382 ATPases associated with a variety of cellular activities SH05_RS04560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH05_RS04565 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH05_RS04590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH05_RS04635 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH05_RS04645 SM00935 Outer membrane protein (OmpH-like) SH05_RS04675 SM00481 DNA polymerase alpha chain like domain SH05_RS04695 SM00977 TilS substrate C-terminal domain SH05_RS04710 SM01322 SH05_RS04710 SH05_RS04755 SM00382 ATPases associated with a variety of cellular activities SH05_RS04755 SM00930 SH05_RS04755 SH05_RS04815 SM00257 Lysin motif SH05_RS04820 SM00849 Metallo-beta-lactamase superfamily SH05_RS04835 SM00479 SH05_RS04835 SH05_RS04910 SM01321 SH05_RS04910 SH05_RS04980 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH05_RS05095 SM00382 ATPases associated with a variety of cellular activities SH05_RS05130 SM01130 SH05_RS05130 SH05_RS05150 SM00346 helix_turn_helix isocitrate lyase regulation SH05_RS05215 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH05_RS05220 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH05_RS05265 SM00421 helix_turn_helix, Lux Regulon SH05_RS05305 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS05325 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS05380 SM00052 Putative diguanylate phosphodiesterase SH05_RS05380 SM00421 helix_turn_helix, Lux Regulon SH05_RS05395 SM00248 ankyrin repeats SH05_RS05430 SM00829 Enoylreductase SH05_RS05455 SM00382 ATPases associated with a variety of cellular activities SH05_RS05495 SM00947 Carbonic anhydrase SH05_RS05500 SM01116 SH05_RS05500 SH05_RS05510 SM01266 SH05_RS05510 SH05_RS05530 SM00346 helix_turn_helix isocitrate lyase regulation SH05_RS05555 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH05_RS05580 SM00829 Enoylreductase SH05_RS05620 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS05625 SM00382 ATPases associated with a variety of cellular activities SH05_RS05640 SM01004 Delta-aminolevulinic acid dehydratase SH05_RS05665 SM00869 Autotransporter beta-domain SH05_RS05720 SM00098 Alkaline phosphatase homologues SH05_RS05730 SM00267 diguanylate cyclase SH05_RS05800 SM00448 cheY-homologous receiver domain SH05_RS05800 SM00862 Transcriptional regulatory protein, C terminal SH05_RS05805 SM00091 PAS domain SH05_RS05805 SM00387 Histidine kinase-like ATPases SH05_RS05805 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS05820 SM00642 Alpha-amylase domain SH05_RS05840 SM01323 SH05_RS05840 SH05_RS05855 SM00507 HNH nucleases SH05_RS05910 SM00861 Transketolase, pyrimidine binding domain SH05_RS05925 SM00981 SH05_RS05925 SH05_RS06005 SM00382 ATPases associated with a variety of cellular activities SH05_RS06005 SM00994 ClpX C4-type zinc finger SH05_RS06005 SM01086 C-terminal, D2-small domain, of ClpB protein SH05_RS06010 SM00382 ATPases associated with a variety of cellular activities SH05_RS06010 SM00464 Found in ATP-dependent protease La (LON) SH05_RS06015 SM00411 bacterial (prokaryotic) histone like domain SH05_RS06025 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH05_RS06050 SM00344 helix_turn_helix ASNC type SH05_RS06055 SM00382 ATPases associated with a variety of cellular activities SH05_RS06060 SM00382 ATPases associated with a variety of cellular activities SH05_RS06065 SM00938 Nitrogen regulatory protein P-II SH05_RS06095 SM00052 Putative diguanylate phosphodiesterase SH05_RS06105 SM01266 SH05_RS06105 SH05_RS06165 SM00382 ATPases associated with a variety of cellular activities SH05_RS06175 SM00493 SH05_RS06175 SH05_RS06180 SM00387 Histidine kinase-like ATPases SH05_RS06230 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS06250 SM00422 helix_turn_helix, mercury resistance SH05_RS06260 SM00244 prohibitin homologues SH05_RS06265 SM00382 ATPases associated with a variety of cellular activities SH05_RS06280 SM00822 SH05_RS06280 SH05_RS06290 SM00382 ATPases associated with a variety of cellular activities SH05_RS06325 SM00450 Rhodanese Homology Domain SH05_RS06340 SM00346 helix_turn_helix isocitrate lyase regulation SH05_RS06420 SM01001 AIR carboxylase SH05_RS06435 SM00840 SH05_RS06435 SH05_RS06480 SM00421 helix_turn_helix, Lux Regulon SH05_RS06480 SM00448 cheY-homologous receiver domain SH05_RS06535 SM00857 Resolvase, N terminal domain SH05_RS06545 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS06640 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS06655 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS06665 SM00028 Tetratricopeptide repeats SH05_RS06675 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS06675 SM00387 Histidine kinase-like ATPases SH05_RS06675 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS06680 SM00448 cheY-homologous receiver domain SH05_RS06680 SM00862 Transcriptional regulatory protein, C terminal SH05_RS06765 SM00923 MbtH-like protein SH05_RS06770 SM00823 Phosphopantetheine attachment site SH05_RS06770 SM00824 Thioesterase SH05_RS06780 SM00382 ATPases associated with a variety of cellular activities SH05_RS06820 SM00822 SH05_RS06820 SH05_RS06850 SM00470 ParB-like nuclease domain SH05_RS06935 SM00764 Citrate lyase ligase C-terminal domain SH05_RS06940 SM00091 PAS domain SH05_RS06940 SM00387 Histidine kinase-like ATPases SH05_RS06945 SM00448 cheY-homologous receiver domain SH05_RS06960 SM00357 Cold shock protein domain SH05_RS06980 SM00729 Elongator protein 3, MiaB family, Radical SAM SH05_RS07005 SM00936 Penicillin-binding protein 5, C-terminal domain SH05_RS07035 SM00855 Phosphoglycerate mutase family SH05_RS07065 SM00671 Sel1-like repeats. SH05_RS07075 SM00271 DnaJ molecular chaperone homology domain SH05_RS07080 SM00671 Sel1-like repeats. SH05_RS07105 SM00382 ATPases associated with a variety of cellular activities SH05_RS07120 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS07135 SM00116 Domain in cystathionine beta-synthase and other proteins. SH05_RS07135 SM01091 Transporter associated domain SH05_RS07150 SM00729 Elongator protein 3, MiaB family, Radical SAM SH05_RS07310 SM00448 cheY-homologous receiver domain SH05_RS07310 SM00862 Transcriptional regulatory protein, C terminal SH05_RS07315 SM00387 Histidine kinase-like ATPases SH05_RS07315 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS07400 SM00796 Allophanate hydrolase subunit 1 SH05_RS07405 SM00797 Allophanate hydrolase subunit 2 SH05_RS07415 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH05_RS07415 SM01232 SH05_RS07415 SH05_RS07480 SM00861 Transketolase, pyrimidine binding domain SH05_RS07495 SM00881 CoA binding domain SH05_RS07500 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS07500 SM00866 SH05_RS07500 SH05_RS07510 SM00872 Alpha mannosidase, middle domain SH05_RS07640 SM00855 Phosphoglycerate mutase family SH05_RS07665 SM00382 ATPases associated with a variety of cellular activities SH05_RS07690 SM00382 ATPases associated with a variety of cellular activities SH05_RS07740 SM00729 Elongator protein 3, MiaB family, Radical SAM SH05_RS07740 SM00876 Biotin and Thiamin Synthesis associated domain SH05_RS07760 SM00487 DEAD-like helicases superfamily SH05_RS07760 SM00490 helicase superfamily c-terminal domain SH05_RS07775 SM00729 Elongator protein 3, MiaB family, Radical SAM SH05_RS07780 SM00852 Probable molybdopterin binding domain SH05_RS07815 SM00155 Phospholipase D. Active site motifs. SH05_RS07840 SM00382 ATPases associated with a variety of cellular activities SH05_RS07855 SM00487 DEAD-like helicases superfamily SH05_RS07855 SM00490 helicase superfamily c-terminal domain SH05_RS07865 SM00487 DEAD-like helicases superfamily SH05_RS07865 SM00488 SH05_RS07865 SH05_RS07865 SM00491 SH05_RS07865 SH05_RS07890 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. SH05_RS07915 SM00382 ATPases associated with a variety of cellular activities SH05_RS07925 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS07925 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH05_RS07960 SM00529 Helix-turn-helix diphteria tox regulatory element SH05_RS07975 SM00382 ATPases associated with a variety of cellular activities SH05_RS08010 SM00852 Probable molybdopterin binding domain SH05_RS08020 SM00382 ATPases associated with a variety of cellular activities SH05_RS08045 SM00267 diguanylate cyclase SH05_RS08050 SM00729 Elongator protein 3, MiaB family, Radical SAM SH05_RS08070 SM00936 Penicillin-binding protein 5, C-terminal domain SH05_RS08075 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS08075 SM01134 SH05_RS08075 SH05_RS08080 SM00014 Acid phosphatase homologues SH05_RS08155 SM00382 ATPases associated with a variety of cellular activities SH05_RS08180 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS08180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH05_RS08195 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS08195 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH05_RS08200 SM00382 ATPases associated with a variety of cellular activities SH05_RS08215 SM00644 SH05_RS08215 SH05_RS08280 SM00382 ATPases associated with a variety of cellular activities SH05_RS08285 SM00357 Cold shock protein domain SH05_RS08295 SM00382 ATPases associated with a variety of cellular activities SH05_RS08295 SM01086 C-terminal, D2-small domain, of ClpB protein SH05_RS08305 SM00316 Ribosomal protein S1-like RNA-binding domain SH05_RS08315 SM00382 ATPases associated with a variety of cellular activities SH05_RS08320 SM00382 ATPases associated with a variety of cellular activities SH05_RS08330 SM00344 helix_turn_helix ASNC type SH05_RS08335 SM00843 SH05_RS08335 SH05_RS08345 SM00382 ATPases associated with a variety of cellular activities SH05_RS08355 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS08440 SM00316 Ribosomal protein S1-like RNA-binding domain SH05_RS08445 SM00411 bacterial (prokaryotic) histone like domain SH05_RS08450 SM00849 Metallo-beta-lactamase superfamily SH05_RS08455 SM00382 ATPases associated with a variety of cellular activities SH05_RS08520 SM00849 Metallo-beta-lactamase superfamily SH05_RS08555 SM00382 ATPases associated with a variety of cellular activities SH05_RS08570 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS08630 SM00981 SH05_RS08630 SH05_RS08635 SM00382 ATPases associated with a variety of cellular activities SH05_RS08710 SM00851 MGS-like domain SH05_RS08725 SM00881 CoA binding domain SH05_RS08730 SM00992 Hemimethylated DNA-binding protein YccV like SH05_RS08735 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH05_RS08815 SM00226 Low molecular weight phosphatase family SH05_RS08855 SM00357 Cold shock protein domain SH05_RS08860 SM00357 Cold shock protein domain SH05_RS08880 SM00073 Histidine Phosphotransfer domain SH05_RS08880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS08880 SM00387 Histidine kinase-like ATPases SH05_RS08880 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS08880 SM00448 cheY-homologous receiver domain SH05_RS08890 SM00448 cheY-homologous receiver domain SH05_RS08890 SM00862 Transcriptional regulatory protein, C terminal SH05_RS08915 SM00271 DnaJ molecular chaperone homology domain SH05_RS08955 SM00903 Flavin reductase like domain SH05_RS09050 SM00028 Tetratricopeptide repeats SH05_RS09055 SM00267 diguanylate cyclase SH05_RS09095 SM00481 DNA polymerase alpha chain like domain SH05_RS09125 SM00421 helix_turn_helix, Lux Regulon SH05_RS09155 SM00506 Appr-1"-p processing enzyme SH05_RS09160 SM00155 Phospholipase D. Active site motifs. SH05_RS09215 SM00450 Rhodanese Homology Domain SH05_RS09220 SM00867 YceI-like domain SH05_RS09300 SM00858 SH05_RS09300 SH05_RS09345 SM00047 Lysozyme subfamily 2 SH05_RS09360 SM00316 Ribosomal protein S1-like RNA-binding domain SH05_RS09370 SM00363 S4 RNA-binding domain SH05_RS09400 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SH05_RS09405 SM00822 SH05_RS09405 SH05_RS09415 SM00825 Beta-ketoacyl synthase SH05_RS09505 SM00257 Lysin motif SH05_RS09510 SM00487 DEAD-like helicases superfamily SH05_RS09510 SM00490 helicase superfamily c-terminal domain SH05_RS09510 SM00982 SH05_RS09510 SH05_RS09510 SM01058 CarD-like/TRCF domain SH05_RS09525 SM00382 ATPases associated with a variety of cellular activities SH05_RS09570 SM00382 ATPases associated with a variety of cellular activities SH05_RS09585 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. SH05_RS09590 SM00387 Histidine kinase-like ATPases SH05_RS09595 SM00448 cheY-homologous receiver domain SH05_RS09595 SM00862 Transcriptional regulatory protein, C terminal SH05_RS09625 SM01329 SH05_RS09625 SH05_RS09725 SM00857 Resolvase, N terminal domain SH05_RS09730 SM00507 HNH nucleases SH05_RS09750 SM00422 helix_turn_helix, mercury resistance SH05_RS09755 SM00052 Putative diguanylate phosphodiesterase SH05_RS09755 SM01034 Sensors of blue-light using FAD SH05_RS09780 SM00052 Putative diguanylate phosphodiesterase SH05_RS09895 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS09910 SM01005 Alanine racemase, C-terminal domain SH05_RS09915 SM01091 Transporter associated domain SH05_RS09955 SM01120 SH05_RS09955 SH05_RS09965 SM00091 PAS domain SH05_RS09965 SM00382 ATPases associated with a variety of cellular activities SH05_RS09970 SM00869 Autotransporter beta-domain SH05_RS10000 SM01400 SH05_RS10000 SH05_RS10020 SM00937 SH05_RS10020 SH05_RS10085 SM00421 helix_turn_helix, Lux Regulon SH05_RS10085 SM00448 cheY-homologous receiver domain SH05_RS10090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS10090 SM00387 Histidine kinase-like ATPases SH05_RS10105 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS10165 SM00528 Domain in histone-like proteins of HNS family SH05_RS10210 SM00382 ATPases associated with a variety of cellular activities SH05_RS10215 SM00382 ATPases associated with a variety of cellular activities SH05_RS10225 SM00155 Phospholipase D. Active site motifs. SH05_RS10310 SM00481 DNA polymerase alpha chain like domain SH05_RS10325 SM00363 S4 RNA-binding domain SH05_RS10335 SM00822 SH05_RS10335 SH05_RS10360 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH05_RS10360 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH05_RS10360 SM00493 SH05_RS10360 SH05_RS10395 SM00014 Acid phosphatase homologues SH05_RS10405 SM00028 Tetratricopeptide repeats SH05_RS10410 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH05_RS10425 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS10425 SM01134 SH05_RS10425 SH05_RS10435 SM00052 Putative diguanylate phosphodiesterase SH05_RS10435 SM00091 PAS domain SH05_RS10435 SM00267 diguanylate cyclase SH05_RS10445 SM00357 Cold shock protein domain SH05_RS10445 SM00955 SH05_RS10445 SH05_RS10465 SM00382 ATPases associated with a variety of cellular activities SH05_RS10470 SM00382 ATPases associated with a variety of cellular activities SH05_RS10505 SM01230 SH05_RS10505 SH05_RS10515 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS10535 SM00382 ATPases associated with a variety of cellular activities SH05_RS10560 SM00450 Rhodanese Homology Domain SH05_RS10565 SM00642 Alpha-amylase domain SH05_RS10620 SM00354 helix_turn _helix lactose operon repressor SH05_RS10635 SM00091 PAS domain SH05_RS10635 SM00382 ATPases associated with a variety of cellular activities SH05_RS10645 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH05_RS10700 SM00100 Cyclic nucleotide-monophosphate binding domain SH05_RS10700 SM00419 helix_turn_helix, cAMP Regulatory protein SH05_RS10740 SM00463 Small MutS-related domain SH05_RS10745 SM00091 PAS domain SH05_RS10745 SM00267 diguanylate cyclase SH05_RS10760 SM00487 DEAD-like helicases superfamily SH05_RS10760 SM00490 helicase superfamily c-terminal domain SH05_RS10860 SM00470 ParB-like nuclease domain SH05_RS10915 SM00857 Resolvase, N terminal domain SH05_RS10935 SM00890 Domain of unknown function SH05_RS10970 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS11105 SM00195 Dual specificity phosphatase, catalytic domain SH05_RS11105 SM00404 Protein tyrosine phosphatase, catalytic domain motif SH05_RS11115 SM00382 ATPases associated with a variety of cellular activities SH05_RS11115 SM00487 DEAD-like helicases superfamily SH05_RS11115 SM00490 helicase superfamily c-terminal domain SH05_RS11115 SM00847 Helicase associated domain (HA2) Add an annotation SH05_RS11160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH05_RS11160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS11160 SM00319 Homologues of the ligand binding domain of Tar SH05_RS11170 SM01150 SH05_RS11170 SH05_RS11220 SM01321 SH05_RS11220 SH05_RS11235 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS11255 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS11260 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS11270 SM00382 ATPases associated with a variety of cellular activities SH05_RS11315 SM00829 Enoylreductase SH05_RS11320 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS11320 SM00895 SH05_RS11320 SH05_RS11375 SM00903 Flavin reductase like domain SH05_RS11405 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS11430 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS11450 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS11455 SM00829 Enoylreductase SH05_RS11460 SM00919 Malic enzyme, NAD binding domain SH05_RS11460 SM01274 SH05_RS11460 SH05_RS11480 SM00382 ATPases associated with a variety of cellular activities SH05_RS11485 SM00382 ATPases associated with a variety of cellular activities SH05_RS11510 SM00052 Putative diguanylate phosphodiesterase SH05_RS11510 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH05_RS11510 SM00091 PAS domain SH05_RS11510 SM00267 diguanylate cyclase SH05_RS11515 SM00267 diguanylate cyclase SH05_RS11550 SM00382 ATPases associated with a variety of cellular activities SH05_RS11565 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS11610 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS11615 SM00869 Autotransporter beta-domain SH05_RS11635 SM00382 ATPases associated with a variety of cellular activities SH05_RS11655 SM01133 SH05_RS11655 SH05_RS11685 SM00267 diguanylate cyclase SH05_RS11725 SM00347 helix_turn_helix multiple antibiotic resistance protein SH05_RS11730 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS11755 SM00267 diguanylate cyclase SH05_RS11780 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS11780 SM00895 SH05_RS11780 SH05_RS11805 SM00857 Resolvase, N terminal domain SH05_RS11845 SM00357 Cold shock protein domain SH05_RS11870 SM00357 Cold shock protein domain SH05_RS11875 SM00357 Cold shock protein domain SH05_RS11885 SM00507 HNH nucleases SH05_RS11930 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS11980 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH05_RS12010 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS12015 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS12095 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SH05_RS12095 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SH05_RS12120 SM00448 cheY-homologous receiver domain SH05_RS12120 SM00862 Transcriptional regulatory protein, C terminal SH05_RS12125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS12125 SM00387 Histidine kinase-like ATPases SH05_RS12125 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS12180 SM00354 helix_turn _helix lactose operon repressor SH05_RS12240 SM00900 SH05_RS12240 SH05_RS12250 SM00478 endonuclease III SH05_RS12250 SM00525 SH05_RS12250 SH05_RS12275 SM00363 S4 RNA-binding domain SH05_RS12300 SM00347 helix_turn_helix multiple antibiotic resistance protein SH05_RS12350 SM00479 SH05_RS12350 SH05_RS12355 SM00382 ATPases associated with a variety of cellular activities SH05_RS12355 SM00487 DEAD-like helicases superfamily SH05_RS12355 SM00490 helicase superfamily c-terminal domain SH05_RS12385 SM00354 helix_turn _helix lactose operon repressor SH05_RS12460 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH05_RS12485 SM00257 Lysin motif SH05_RS12505 SM00382 ATPases associated with a variety of cellular activities SH05_RS12565 SM00882 Coenzyme A transferase SH05_RS12575 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS12585 SM00893 Electron transfer flavoprotein domain SH05_RS12590 SM00893 Electron transfer flavoprotein domain SH05_RS12665 SM00411 bacterial (prokaryotic) histone like domain SH05_RS12670 SM00873 B3/4 domain SH05_RS12670 SM00874 tRNA synthetase B5 domain SH05_RS12670 SM00896 Ferredoxin-fold anticodon binding domain SH05_RS12700 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH05_RS12765 SM01060 SH05_RS12765 SH05_RS12780 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS12815 SM00465 GIY-YIG type nucleases (URI domain) SH05_RS12890 SM00382 ATPases associated with a variety of cellular activities SH05_RS12895 SM00450 Rhodanese Homology Domain SH05_RS12915 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH05_RS12925 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH05_RS12925 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH05_RS12925 SM00493 SH05_RS12925 SH05_RS12955 SM00870 SH05_RS12955 SH05_RS12970 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS12970 SM01134 SH05_RS12970 SH05_RS12990 SM00829 Enoylreductase SH05_RS13015 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH05_RS13035 SM00763 PrkA AAA domain SH05_RS13045 SM00267 diguanylate cyclase SH05_RS13050 SM00267 diguanylate cyclase SH05_RS13070 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS13090 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH05_RS13090 SM00267 diguanylate cyclase SH05_RS13125 SM01329 SH05_RS13125 SH05_RS13145 SM00341 Helicase and RNase D C-terminal SH05_RS13145 SM00474 3'-5' exonuclease SH05_RS13165 SM00487 DEAD-like helicases superfamily SH05_RS13165 SM00491 SH05_RS13165 SH05_RS13200 SM00052 Putative diguanylate phosphodiesterase SH05_RS13205 SM01091 Transporter associated domain SH05_RS13250 SM00357 Cold shock protein domain SH05_RS13280 SM00346 helix_turn_helix isocitrate lyase regulation SH05_RS13295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH05_RS13295 SM00245 tail specific protease SH05_RS13300 SM00945 ProQ/FINO family SH05_RS13305 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH05_RS13370 SM00479 SH05_RS13370 SH05_RS13440 SM00257 Lysin motif SH05_RS13450 SM00382 ATPases associated with a variety of cellular activities SH05_RS13460 SM00382 ATPases associated with a variety of cellular activities SH05_RS13465 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH05_RS13540 SM00836 DALR anticodon binding domain SH05_RS13540 SM01016 Arginyl tRNA synthetase N terminal dom SH05_RS13570 SM00448 cheY-homologous receiver domain SH05_RS13575 SM00448 cheY-homologous receiver domain SH05_RS13580 SM00138 Methyltransferase, chemotaxis proteins SH05_RS13585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH05_RS13585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS13585 SM00319 Homologues of the ligand binding domain of Tar SH05_RS13590 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH05_RS13590 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS13590 SM00319 Homologues of the ligand binding domain of Tar SH05_RS13595 SM00260 Two component signalling adaptor domain SH05_RS13600 SM00073 Histidine Phosphotransfer domain SH05_RS13600 SM00260 Two component signalling adaptor domain SH05_RS13600 SM00387 Histidine kinase-like ATPases SH05_RS13600 SM01231 SH05_RS13600 SH05_RS13645 SM00382 ATPases associated with a variety of cellular activities SH05_RS13715 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH05_RS13715 SM00465 GIY-YIG type nucleases (URI domain) SH05_RS13720 SM00421 helix_turn_helix, Lux Regulon SH05_RS13720 SM00448 cheY-homologous receiver domain SH05_RS13735 SM00421 helix_turn_helix, Lux Regulon SH05_RS13740 SM00382 ATPases associated with a variety of cellular activities SH05_RS13755 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS13755 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH05_RS13790 SM00642 Alpha-amylase domain SH05_RS13855 SM00382 ATPases associated with a variety of cellular activities SH05_RS13905 SM00421 helix_turn_helix, Lux Regulon SH05_RS13925 SM00267 diguanylate cyclase SH05_RS13955 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH05_RS13985 SM00387 Histidine kinase-like ATPases SH05_RS13985 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS13990 SM00448 cheY-homologous receiver domain SH05_RS13990 SM00862 Transcriptional regulatory protein, C terminal SH05_RS13995 SM00095 Transthyretin SH05_RS14040 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins SH05_RS14040 SM00634 Bacterial Ig-like domain (group 1) SH05_RS14150 SM00869 Autotransporter beta-domain SH05_RS14205 SM00871 Bacterial transcription activator, effector binding domain SH05_RS14210 SM00936 Penicillin-binding protein 5, C-terminal domain SH05_RS14215 SM00479 SH05_RS14215 SH05_RS14300 SM00984 UDP binding domain SH05_RS14305 SM01350 SH05_RS14305 SH05_RS14465 SM00226 Low molecular weight phosphatase family SH05_RS14475 SM00116 Domain in cystathionine beta-synthase and other proteins. SH05_RS14475 SM01091 Transporter associated domain SH05_RS14495 SM00052 Putative diguanylate phosphodiesterase SH05_RS14495 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH05_RS14495 SM00091 PAS domain SH05_RS14495 SM00267 diguanylate cyclase SH05_RS14500 SM00478 endonuclease III SH05_RS14500 SM01009 AlkA N-terminal domain SH05_RS14530 SM00327 von Willebrand factor (vWF) type A domain SH05_RS14555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS14555 SM00387 Histidine kinase-like ATPases SH05_RS14555 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS14560 SM00448 cheY-homologous receiver domain SH05_RS14560 SM00862 Transcriptional regulatory protein, C terminal SH05_RS14590 SM00046 Diacylglycerol kinase catalytic domain (presumed) SH05_RS14595 SM01134 SH05_RS14595 SH05_RS14610 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS14615 SM00829 Enoylreductase SH05_RS14645 SM01133 SH05_RS14645 SH05_RS14665 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS14665 SM00866 SH05_RS14665 SH05_RS14670 SM00641 Glycosyl hydrolases family 25 SH05_RS14740 SM00773 Proposed nucleic acid binding domain SH05_RS14760 SM00382 ATPases associated with a variety of cellular activities SH05_RS14770 SM00327 von Willebrand factor (vWF) type A domain SH05_RS14790 SM00448 cheY-homologous receiver domain SH05_RS14790 SM00850 LytTr DNA-binding domain SH05_RS14795 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH05_RS14800 SM00422 helix_turn_helix, mercury resistance SH05_RS14815 SM00382 ATPases associated with a variety of cellular activities SH05_RS14830 SM01217 SH05_RS14830 SH05_RS14930 SM00354 helix_turn _helix lactose operon repressor SH05_RS14980 SM00518 AP endonuclease family 2 SH05_RS15000 SM00100 Cyclic nucleotide-monophosphate binding domain SH05_RS15045 SM00841 Elongation factor P, C-terminal SH05_RS15045 SM01185 SH05_RS15045 SH05_RS15055 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH05_RS15060 SM00014 Acid phosphatase homologues SH05_RS15070 SM00052 Putative diguanylate phosphodiesterase SH05_RS15090 SM00382 ATPases associated with a variety of cellular activities SH05_RS15105 SM00363 S4 RNA-binding domain SH05_RS15110 SM00487 DEAD-like helicases superfamily SH05_RS15110 SM00490 helicase superfamily c-terminal domain SH05_RS15140 SM00869 Autotransporter beta-domain SH05_RS15155 SM00421 helix_turn_helix, Lux Regulon SH05_RS15155 SM00448 cheY-homologous receiver domain SH05_RS15195 SM00382 ATPases associated with a variety of cellular activities SH05_RS15220 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS15250 SM00382 ATPases associated with a variety of cellular activities SH05_RS15260 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS15285 SM00387 Histidine kinase-like ATPases SH05_RS15290 SM00421 helix_turn_helix, Lux Regulon SH05_RS15290 SM00448 cheY-homologous receiver domain SH05_RS15295 SM00387 Histidine kinase-like ATPases SH05_RS15295 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS15295 SM00448 cheY-homologous receiver domain SH05_RS15300 SM00091 PAS domain SH05_RS15300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS15300 SM00387 Histidine kinase-like ATPases SH05_RS15300 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS15305 SM00382 ATPases associated with a variety of cellular activities SH05_RS15305 SM00448 cheY-homologous receiver domain SH05_RS15310 SM00882 Coenzyme A transferase SH05_RS15315 SM00882 Coenzyme A transferase SH05_RS15345 SM01359 SH05_RS15345 SH05_RS15345 SM01360 SH05_RS15345 SH05_RS15360 SM00434 DNA Topoisomerase IV SH05_RS15370 SM00869 Autotransporter beta-domain SH05_RS15455 SM00346 helix_turn_helix isocitrate lyase regulation SH05_RS15460 SM00852 Probable molybdopterin binding domain SH05_RS15525 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH05_RS15560 SM00849 Metallo-beta-lactamase superfamily SH05_RS15570 SM00327 von Willebrand factor (vWF) type A domain SH05_RS15635 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH05_RS15635 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH05_RS15640 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH05_RS15675 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH05_RS15740 SM00905 Dihydroneopterin aldolase SH05_RS15755 SM00382 ATPases associated with a variety of cellular activities SH05_RS15770 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS15775 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS15820 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH05_RS15840 SM00825 Beta-ketoacyl synthase SH05_RS15880 SM00463 Small MutS-related domain SH05_RS16075 SM00421 helix_turn_helix, Lux Regulon SH05_RS16075 SM00448 cheY-homologous receiver domain SH05_RS16080 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS16080 SM00073 Histidine Phosphotransfer domain SH05_RS16080 SM00387 Histidine kinase-like ATPases SH05_RS16080 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS16080 SM00448 cheY-homologous receiver domain SH05_RS16135 SM00387 Histidine kinase-like ATPases SH05_RS16140 SM00448 cheY-homologous receiver domain SH05_RS16140 SM00850 LytTr DNA-binding domain SH05_RS16145 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS16210 SM00052 Putative diguanylate phosphodiesterase SH05_RS16210 SM00267 diguanylate cyclase SH05_RS16300 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH05_RS16300 SM00292 breast cancer carboxy-terminal domain SH05_RS16300 SM00532 Ligase N family SH05_RS16305 SM00771 ZipA, C-terminal domain (FtsZ-binding) SH05_RS16345 SM00773 Proposed nucleic acid binding domain SH05_RS16355 SM00382 ATPases associated with a variety of cellular activities SH05_RS16375 SM00822 SH05_RS16375 SH05_RS16420 SM00646 SH05_RS16420 SH05_RS16430 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS16435 SM00877 SH05_RS16435 SH05_RS16440 SM00877 SH05_RS16440 SH05_RS16485 SM00877 SH05_RS16485 SH05_RS16510 SM00877 SH05_RS16510 SH05_RS16515 SM00919 Malic enzyme, NAD binding domain SH05_RS16515 SM01274 SH05_RS16515 SH05_RS16525 SM00861 Transketolase, pyrimidine binding domain SH05_RS16545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS16545 SM00387 Histidine kinase-like ATPases SH05_RS16605 SM01130 SH05_RS16605 SH05_RS16670 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH05_RS16670 SM00382 ATPases associated with a variety of cellular activities SH05_RS16730 SM00052 Putative diguanylate phosphodiesterase SH05_RS16730 SM00267 diguanylate cyclase SH05_RS16760 SM00116 Domain in cystathionine beta-synthase and other proteins. SH05_RS16760 SM01240 SH05_RS16760 SH05_RS16780 SM00564 beta-propeller repeat SH05_RS16800 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS16810 SM00562 SH05_RS16810 SH05_RS16820 SM01359 SH05_RS16820 SH05_RS16820 SM01360 SH05_RS16820 SH05_RS16825 SM00450 Rhodanese Homology Domain SH05_RS16855 SM00271 DnaJ molecular chaperone homology domain SH05_RS16945 SM00829 Enoylreductase SH05_RS16955 SM00382 ATPases associated with a variety of cellular activities SH05_RS16965 SM00028 Tetratricopeptide repeats SH05_RS16985 SM00938 Nitrogen regulatory protein P-II SH05_RS16990 SM00382 ATPases associated with a variety of cellular activities SH05_RS16990 SM00448 cheY-homologous receiver domain SH05_RS17000 SM00387 Histidine kinase-like ATPases SH05_RS17000 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS17005 SM01211 SH05_RS17005 SH05_RS17010 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS17070 SM00358 Double-stranded RNA binding motif SH05_RS17070 SM00535 Ribonuclease III family SH05_RS17120 SM00487 DEAD-like helicases superfamily SH05_RS17120 SM00490 helicase superfamily c-terminal domain SH05_RS17145 SM00986 Uracil DNA glycosylase superfamily SH05_RS17145 SM00987 UreE urease accessory protein, C-terminal domain SH05_RS17150 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH05_RS17165 SM01144 SH05_RS17165 SH05_RS17170 SM00881 CoA binding domain SH05_RS17175 SM00155 Phospholipase D. Active site motifs. SH05_RS17215 SM00382 ATPases associated with a variety of cellular activities SH05_RS17215 SM01086 C-terminal, D2-small domain, of ClpB protein SH05_RS17225 SM00363 S4 RNA-binding domain SH05_RS17245 SM00830 Chorismate mutase type II SH05_RS17250 SM00830 Chorismate mutase type II SH05_RS17270 SM00267 diguanylate cyclase SH05_RS17300 SM00382 ATPases associated with a variety of cellular activities SH05_RS17300 SM00962 SRP54-type protein, GTPase domain SH05_RS17300 SM00963 SRP54-type protein, helical bundle domain SH05_RS17310 SM01091 Transporter associated domain SH05_RS17380 SM00487 DEAD-like helicases superfamily SH05_RS17380 SM00490 helicase superfamily c-terminal domain SH05_RS17545 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS17545 SM00895 SH05_RS17545 SH05_RS17550 SM00257 Lysin motif SH05_RS17550 SM00749 bacterial OsmY and nodulation domain SH05_RS17560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH05_RS17565 SM00450 Rhodanese Homology Domain SH05_RS17570 SM00528 Domain in histone-like proteins of HNS family SH05_RS17610 SM00382 ATPases associated with a variety of cellular activities SH05_RS17640 SM00347 helix_turn_helix multiple antibiotic resistance protein SH05_RS17710 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH05_RS17735 SM01059 Chloramphenicol acetyltransferase SH05_RS17775 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS17775 SM01134 SH05_RS17775 SH05_RS17785 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH05_RS17785 SM00382 ATPases associated with a variety of cellular activities SH05_RS17790 SM00849 Metallo-beta-lactamase superfamily SH05_RS17810 SM00354 helix_turn _helix lactose operon repressor SH05_RS17900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH05_RS17900 SM00382 ATPases associated with a variety of cellular activities SH05_RS17910 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SH05_RS17910 SM00534 ATPase domain of DNA mismatch repair MUTS family SH05_RS17920 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS17920 SM01134 SH05_RS17920 SH05_RS17935 SM01007 Class II Aldolase and Adducin N-terminal domain SH05_RS17955 SM00257 Lysin motif SH05_RS18025 SM01101 SH05_RS18025 SH05_RS18050 SM00487 DEAD-like helicases superfamily SH05_RS18050 SM00490 helicase superfamily c-terminal domain SH05_RS18095 SM00893 Electron transfer flavoprotein domain SH05_RS18140 SM01192 SH05_RS18140 SH05_RS18140 SM01193 SH05_RS18140 SH05_RS18160 SM00966 SpoVT / AbrB like domain SH05_RS18165 SM00954 Region found in RelA / SpoT proteins SH05_RS18175 SM00073 Histidine Phosphotransfer domain SH05_RS18175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS18175 SM00387 Histidine kinase-like ATPases SH05_RS18175 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS18175 SM00448 cheY-homologous receiver domain SH05_RS18180 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH05_RS18185 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH05_RS18240 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH05_RS18240 SM00475 5'-3' exonuclease SH05_RS18250 SM01007 Class II Aldolase and Adducin N-terminal domain SH05_RS18275 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS18275 SM01134 SH05_RS18275 SH05_RS18315 SM00925 MltA specific insert domain SH05_RS18335 SM00646 SH05_RS18335 SH05_RS18395 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH05_RS18415 SM00927 DNA mismatch repair enzyme MutH SH05_RS18440 SM00563 Phosphate acyltransferases SH05_RS18445 SM00354 helix_turn _helix lactose operon repressor SH05_RS18495 SM00862 Transcriptional regulatory protein, C terminal SH05_RS18520 SM00028 Tetratricopeptide repeats SH05_RS18520 SM00862 Transcriptional regulatory protein, C terminal SH05_RS18535 SM00421 helix_turn_helix, Lux Regulon SH05_RS18585 SM00257 Lysin motif SH05_RS18590 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH05_RS18595 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH05_RS18605 SM00091 PAS domain SH05_RS18605 SM00382 ATPases associated with a variety of cellular activities SH05_RS18660 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH05_RS18665 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH05_RS18720 SM00937 SH05_RS18720 SH05_RS18765 SM01022 SH05_RS18765 SH05_RS18805 SM01011 Aminopeptidase P, N-terminal domain SH05_RS18895 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH05_RS18930 SM00861 Transketolase, pyrimidine binding domain SH05_RS18975 SM00731 SprT homologues. SH05_RS19000 SM00732 Likely ribonuclease with RNase H fold. SH05_RS19005 SM00382 ATPases associated with a variety of cellular activities SH05_RS19020 SM01152 SH05_RS19020 SH05_RS19030 SM00729 Elongator protein 3, MiaB family, Radical SAM SH05_RS19040 SM00870 SH05_RS19040 SH05_RS19065 SM00478 endonuclease III SH05_RS19065 SM00525 SH05_RS19065 SH05_RS19125 SM01276 SH05_RS19125 SH05_RS19165 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS19165 SM00895 SH05_RS19165 SH05_RS19310 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS19340 SM00729 Elongator protein 3, MiaB family, Radical SAM SH05_RS19350 SM00563 Phosphate acyltransferases SH05_RS19355 SM00434 DNA Topoisomerase IV SH05_RS19365 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS19375 SM00871 Bacterial transcription activator, effector binding domain SH05_RS19385 SM00448 cheY-homologous receiver domain SH05_RS19385 SM00862 Transcriptional regulatory protein, C terminal SH05_RS19390 SM00387 Histidine kinase-like ATPases SH05_RS19390 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS19410 SM00387 Histidine kinase-like ATPases SH05_RS19410 SM00433 TopoisomeraseII SH05_RS19520 SM00244 prohibitin homologues SH05_RS19545 SM01118 SH05_RS19545 SH05_RS19555 SM00287 Bacterial SH3 domain homologues SH05_RS19570 SM00905 Dihydroneopterin aldolase SH05_RS19575 SM01207 SH05_RS19575 SH05_RS19610 SM00400 zinc finger SH05_RS19610 SM00493 SH05_RS19610 SH05_RS19610 SM00766 DNA primase DnaG DnaB-binding SH05_RS19640 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH05_RS19640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH05_RS19655 SM00354 helix_turn _helix lactose operon repressor SH05_RS19660 SM01038 Beta galactosidase small chain SH05_RS19690 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS19740 SM00858 SH05_RS19740 SH05_RS19755 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS19755 SM00895 SH05_RS19755 SH05_RS19915 SM00858 SH05_RS19915 SH05_RS19930 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS19930 SM01134 SH05_RS19930 SH05_RS20025 SM00749 bacterial OsmY and nodulation domain SH05_RS20035 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH05_RS20050 SM00465 GIY-YIG type nucleases (URI domain) SH05_RS20090 SM00487 DEAD-like helicases superfamily SH05_RS20090 SM00490 helicase superfamily c-terminal domain SH05_RS20095 SM00028 Tetratricopeptide repeats SH05_RS20100 SM00316 Ribosomal protein S1-like RNA-binding domain SH05_RS20100 SM00322 K homology RNA-binding domain SH05_RS20105 SM01387 SH05_RS20105 SH05_RS20125 SM00316 Ribosomal protein S1-like RNA-binding domain SH05_RS20170 SM00382 ATPases associated with a variety of cellular activities SH05_RS20180 SM01103 SH05_RS20180 SH05_RS20255 SM00382 ATPases associated with a variety of cellular activities SH05_RS20285 SM00382 ATPases associated with a variety of cellular activities SH05_RS20360 SM01130 SH05_RS20360 SH05_RS20365 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS20365 SM00895 SH05_RS20365 SH05_RS20405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH05_RS20410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH05_RS20465 SM00316 Ribosomal protein S1-like RNA-binding domain SH05_RS20495 SM00052 Putative diguanylate phosphodiesterase SH05_RS20495 SM00267 diguanylate cyclase SH05_RS20500 SM00829 Enoylreductase SH05_RS20525 SM00878 Biotin carboxylase C-terminal domain SH05_RS20590 SM00062 Bacterial periplasmic substrate-binding proteins SH05_RS20605 SM00382 ATPases associated with a variety of cellular activities SH05_RS20710 SM00422 helix_turn_helix, mercury resistance SH05_RS20725 SM00662 RNA polymerases D SH05_RS20730 SM00363 S4 RNA-binding domain SH05_RS20730 SM01390 SH05_RS20730 SH05_RS20795 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH05_RS20800 SM01374 SH05_RS20800 SH05_RS20820 SM00322 K homology RNA-binding domain SH05_RS20835 SM01382 SH05_RS20835 SH05_RS20835 SM01383 SH05_RS20835 SH05_RS20855 SM01403 SH05_RS20855 SH05_RS20880 SM00382 ATPases associated with a variety of cellular activities SH05_RS20940 SM00495 Chitin-binding domain type 3 SH05_RS20950 SM00838 Elongation factor G C-terminus SH05_RS20950 SM00889 Elongation factor G, domain IV SH05_RS21015 SM00382 ATPases associated with a variety of cellular activities SH05_RS21045 SM00100 Cyclic nucleotide-monophosphate binding domain SH05_RS21045 SM00419 helix_turn_helix, cAMP Regulatory protein SH05_RS21130 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS21130 SM00866 SH05_RS21130 SH05_RS21210 SM00965 Secretin and TonB N terminus short domain SH05_RS21255 SM00363 S4 RNA-binding domain SH05_RS21280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH05_RS21280 SM00387 Histidine kinase-like ATPases SH05_RS21280 SM00388 His Kinase A (phosphoacceptor) domain SH05_RS21285 SM00448 cheY-homologous receiver domain SH05_RS21285 SM00862 Transcriptional regulatory protein, C terminal SH05_RS21295 SM00316 Ribosomal protein S1-like RNA-binding domain SH05_RS21295 SM00732 Likely ribonuclease with RNase H fold. SH05_RS21300 SM00899 SH05_RS21300 SH05_RS21350 SM00421 helix_turn_helix, Lux Regulon SH05_RS21365 SM00382 ATPases associated with a variety of cellular activities SH05_RS21370 SM00420 helix_turn_helix, Deoxyribose operon repressor SH05_RS21370 SM01134 SH05_RS21370 SH05_RS21380 SM00450 Rhodanese Homology Domain SH05_RS21410 SM00642 Alpha-amylase domain SH05_RS21415 SM00642 Alpha-amylase domain SH05_RS21420 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH05_RS21440 SM00354 helix_turn _helix lactose operon repressor SH05_RS21495 SM00382 ATPases associated with a variety of cellular activities SH05_RS21520 SM00382 ATPases associated with a variety of cellular activities SH05_RS21525 SM00382 ATPases associated with a variety of cellular activities SH05_RS21570 SM00382 ATPases associated with a variety of cellular activities SH05_RS21575 SM00382 ATPases associated with a variety of cellular activities SH05_RS21575 SM00962 SRP54-type protein, GTPase domain SH05_RS21575 SM00963 SRP54-type protein, helical bundle domain SH05_RS21650 SM00382 ATPases associated with a variety of cellular activities SH05_RS21655 SM00382 ATPases associated with a variety of cellular activities SH05_RS21690 SM00382 ATPases associated with a variety of cellular activities SH05_RS21780 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH05_RS21815 SM00421 helix_turn_helix, Lux Regulon SH05_RS21860 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS21865 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS21875 SM01235 SH05_RS21875 SH05_RS21885 SM00421 helix_turn_helix, Lux Regulon SH05_RS21910 SM00052 Putative diguanylate phosphodiesterase SH05_RS21935 SM00052 Putative diguanylate phosphodiesterase SH05_RS21935 SM00267 diguanylate cyclase SH05_RS21940 SM00028 Tetratricopeptide repeats SH05_RS22005 SM00382 ATPases associated with a variety of cellular activities SH05_RS22010 SM00382 ATPases associated with a variety of cellular activities SH05_RS22090 SM00530 Helix-turn-helix XRE-family like proteins SH05_RS22095 SM00357 Cold shock protein domain SH05_RS22170 SM00382 ATPases associated with a variety of cellular activities SH05_RS22180 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS22185 SM00047 Lysozyme subfamily 2 SH05_RS22190 SM00642 Alpha-amylase domain SH05_RS22210 SM00346 helix_turn_helix isocitrate lyase regulation SH05_RS22245 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH05_RS22255 SM01007 Class II Aldolase and Adducin N-terminal domain SH05_RS22375 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS22375 SM00895 SH05_RS22375 SH05_RS22390 SM00971 Serine acetyltransferase, N-terminal SH05_RS22410 SM00450 Rhodanese Homology Domain SH05_RS22440 SM00829 Enoylreductase SH05_RS22535 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH05_RS22535 SM01232 SH05_RS22535 SH05_RS22595 SM00532 Ligase N family SH05_RS22600 SM00072 Guanylate kinase homologues. SH05_RS22605 SM01409 SH05_RS22605 SH05_RS22610 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH05_RS22610 SM00954 Region found in RelA / SpoT proteins SH05_RS22620 SM00487 DEAD-like helicases superfamily SH05_RS22620 SM00490 helicase superfamily c-terminal domain SH05_RS22715 SM00387 Histidine kinase-like ATPases SH05_RS22720 SM00421 helix_turn_helix, Lux Regulon SH05_RS22720 SM00448 cheY-homologous receiver domain SH05_RS22790 SM00342 helix_turn_helix, arabinose operon control protein SH05_RS22810 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS22810 SM00866 SH05_RS22810 SH05_RS22850 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH05_RS22865 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH05_RS22865 SM00895 SH05_RS22865 SH05_RS22890 SM00387 Histidine kinase-like ATPases SH05_RS22890 SM00433 TopoisomeraseII SH05_RS22900 SM00480 DNA polymerase III beta subunit SH05_RS22905 SM00382 ATPases associated with a variety of cellular activities SH05_RS22905 SM00760 Bacterial dnaA protein helix-turn-helix domain