SH05_RS00015 NONE
SH05_RS00020    3019 ..    3036 + -12.7  -5.83211   TTTCGCTAAAATAAG             GGCGGTC AGTT GACCGCC              TTTTTTCTTTTCGTA 100 51
        trmE    4472 ..    4507 + -15.6  -3.53712   TAAGTAACCGCGCTT    ACGAAGCCGCATTCTGA CTG TCAGA-TGCGGCTTCGC    TTCATTGTTACCACT 100 34
SH05_RS00030    4818 ..    4835 +  -2.1  -4.55209   CAGAGCCAAACCGAT             TAGATTCA ATG TGA-TCTA             TTTGTTTGCTATATC  60 63
        tnaA    6428 ..    6454 +  -8.1  -3.06492   TTAATTAATACTACA         GAGTGGCTA TAAGGATGT TAGCCACTC         TCTTACCCTACATCC  62 37
SH05_RS00040    7764 ..    7786 + -13.5  -3.12351   GGCTAAATCCTTCAA           GAAGCCAGC CATTC GCTGGCTTC           TTGCCTCTCAGGAAA 100 35
SH05_RS00045 NONE
SH05_RS00050   10101 ..   10112 +    -3  -3.44124   CTGTCCATCATTCCA                GTAA ATGA TTAC                 TCTTGTATTCATAAT  49 131
SH05_RS00055 NONE
SH05_RS00060   11498 ..   11522 + -12.2  -4.57837   GATCTAAATAAAAAA         CCCGCCA-GCA ATCA TGCATGGCGGG          TTTTTAACGCGCTAT 100 34
SH05_RS00070 NONE
SH05_RS00075   14249 ..   14259 +    -4  -3.62096   CTTTAAGTTAAGCGG                 GATA CTT TATC                 TTTGGGCTACTCAAA  54 30
SH05_RS00080   14901 ..   14928 +  -7.7   -4.2204   TAAATAATGAGAACA        GGCCGGA-GCGT AATTC ACACATCCGGCC        TTATTTCTTAAGCTT  76 46
SH05_RS00215   44912 ..   44926 +  -4.9  -3.25304   CACACAGACAATAAA               CGGCC CGCGC GGCTG               TTCATCGTAATCTTT  49 519
        trkD   49463 ..   49487 +  -9.3  -5.50723   AAATCTAACGCCAGA          CGCCTCCTT TCTTCAT AAGGGGGCG          TTTTTGTTTTCATGG 100 33
SH05_RS00235   50023 ..   50057 +  -5.6  -3.37612   GAATATCATTCTCTG     TGCTGGCGTGACGTTC TGA GGCCGTCATGGAAGCA     TTACTTCAGCTTAAA  57 7
SH05_RS00240 NONE
        rbsC NONE
SH05_RS00250   53522 ..   53544 + -13.4  -3.22906   AGAAAAGCAGGGCAC           GCGCCACCCT AAC ACGGTGGCGC           ATTTTATGGACATCC 100 108
SH05_RS00255 NONE
SH05_RS00260   55605 ..   55616 +  -2.2  -2.57757   TATAGTGGAATTGTT                CGAC AGTC GTTG                 TGCCTTCCATTCCTT  38 140
SH05_RS00275   59641 ..   59654 +  -2.3  -2.72471   AAGAAGCGTTCTTTG               CAGTG CTCA CACAG                ATTGTCTGATAGGAA  40 34
SH05_RS00280   59817 ..   59852 +    -7  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTCATC TTCG GGTGATGTTTGAGATA     TTTGCTCTTTAAAAA  69 61
SH05_RS00285   62954 ..   62967 +  -2.4  -2.78679   AGAACGCAGAAGCGG               TCTG ATGAAA CAGA                ATTTGCCTGGCGGCC  41 89
SH05_RS00290   63107 ..   63122 +  -6.1  -2.82742   AAATTAAGCAGTAAG              CCGGT CATAAA ACCGG               TGGTTGTAAAAGAAT  55 44
SH05_RS00295   63215 ..   63234 +  -2.8  -2.79684   GAGTCCCGTCCGTTC            CGCCACC CTAATTA GG-GGCG            TAGTTCAATTGGTAG  42 21
SH05_RS00300   63311 ..   63330 + -10.8  -6.02914   CCCTGCCAGAAATCA            TCCTTAGC GAAA GCTAAGGA             TTTTTTTTATCTGAA 100 33
SH05_RS00310   64702 ..   64714 +  -6.9  -5.72616   GACGATTAATAAAAA                GGGCG AAA TGCCC                TTTTTTTATGTCAGT 100 32
SH05_RS00320   66716 ..   66739 + -13.8  -5.81032   CTTAACGAACTAAGA          CCCCCGCACC GAAA GGTCCGGGGG           TTTTTTTTGACCTTA 100 50
SH05_RS00325 NONE
        ilvM NONE
SH05_RS00335   69695 ..   69716 + -11.6  -3.53012   AATAAATACAAAAAA           TGGGACGG CACGCA CCGTCCCA            TTTACGAGACAGACA  89 36
SH05_RS00340 NONE
SH05_RS00345   73239 ..   73255 +  -9.4  -4.82901   AGAATGCCTCAATTA              GCGGCT CATGT AGCCGC              TTTTTCTGCGCACAC  95 118
SH05_RS00355   75772 ..   75800 + -16.1  -3.24825   AGAGGGAGAAAACAC        TCAAGGCCTTCTC CTG GAGAAGGCCTTGC        TATTAGTTGCGGTAC 100 81
SH05_RS00370   79033 ..   79059 +  -8.8  -3.73224   AATGCACTTCCAGCG        GCCAGTGGACA TAGCTC TG-CCACTGGC         TTTCCTGAGCAATAA  75 89
        trxA   82338 ..   82366 +  -4.5  -3.93038   GGTCAGTTGAAAGAG        TTCCTCGACGCTA ACC TGGCGTAAGGGAA        TTTCATGTTCGGGTG  61 2
SH05_RS00390 NONE
         rho NONE
SH05_RS00400 NONE
SH05_RS00405 NONE
SH05_RS00410   86359 ..   86384 + -18.3  -3.61517   AATAGCAACACTGCT         GCGGTGAGCGC AAAG GCGCTCGCCGC          TTATTCGAAGAGAAT 100 36
SH05_RS00415 NONE
        wecC NONE
SH05_RS00425   89847 ..   89857 +  -3.2  -3.08032   AGGGCGAGCGTTTAG                 GTCT GAA AGGC                 TAATTTTCAGCGGAG  46 12
SH05_RS00430 NONE
SH05_RS00435 NONE
SH05_RS00440 NONE
SH05_RS00445 NONE
SH05_RS00450 NONE
SH05_RS00455 NONE
SH05_RS00460   96985 ..   97010 + -13.3  -3.18764   TTCCTCTCTTTGTAA         AGCGACGGAGT GGTC ACTCCGTCGCC          TGTCTGCTTTTTTAT 100 43
SH05_RS00465 NONE
SH05_RS00470   98709 ..   98722 +  -2.3  -3.72695   CTCAGGTTCGAATCC               TGTCG GGCG CGCCA                TTTAGTCCCGGCGCT  49 12
SH05_RS00475 NONE
SH05_RS00480 NONE
SH05_RS00485   99091 ..   99106 + -11.8   -5.8901   CCGACCAATTTTGAA              CCCCGC TTCG GCGGGG               TTTTTTGTTTTCTGT 100 34
SH05_RS00490  100639 ..  100684 +  -7.7  -3.74077   TAGTCAGATTTAATC TGCGCGCGTG-GTGGATATTTT TTC AGGATCTCCATATACGCGTGCA TTTCGGTCTGTAGCG  72 200
        cyaA  109972 ..  110007 +  -3.2  -3.01924   AATATTTTTCGTGAT    GAACGTGCCGGA-AAGC GAG GCTTATCCGGCATGCAA    TCTTAGCGGAAACTG  44 27
SH05_RS00530 NONE
        dapF NONE
SH05_RS00540 NONE
        xerC NONE
SH05_RS00550  114198 ..  114231 +  -8.1  -2.93708   TATATATACCCAGCT     TTTTGGCGGAGG-GCG TTG CGCTTCTCCGCCCAAC     CTATTTTTACGCGGC  62 53
        uvrD  116430 ..  116442 +  -9.1   -3.9392   AACGTTGCCGGATGC                GGTGC TGC GCACC                TTATTTGGCCTAAAA  80 39
SH05_RS00565  117539 ..  117576 +  -6.4  -3.29144   GTCATCCAGGATCAA   CTCCTAAGGCTATC CCTTTTTGCT GATAGCCTTAGCGG    TTGTCAGCGACCTCA  59 111
SH05_RS00570  118659 ..  118683 + -15.1  -3.38991   GTAAAAAACGAGAGC          GGTGGCTTAGT CTG GCTAAGCCACC          TGTTATTCAAAGGCT 100 37
SH05_RS00595  122086 ..  122107 + -12.3  -5.27335   TTGCAGTTTCTCGCG           CAGGCGCTG AAAA TAGCGCCTG            TTTTTATTTCAGGCA 100 109
SH05_RS00600 NONE
SH05_RS00605  124669 ..  124705 +  -8.8  -4.58395   GACGCGTCTTCAGAG   TAA-GTCGGATAAGGCG TTTA CGCCGCATCCGACATTA    TTTTTCACGCATGCC 100 46
SH05_RS00615  126445 ..  126458 +  -2.3  -3.94868   CTCACCCAGCGGAAA               CCGCT CTAC AGAGG                TTTAAATTTCTTATG  53 7
SH05_RS00620  127307 ..  127353 +  -2.3  -2.86271   TGTCAACCTGATACT TCGCTACAATGG-ATACCCGTT AATC AAAGAGTTTTCCATTGTGGCGC TACTTATCATCACCA  41 61
SH05_RS00625  128526 ..  128539 +  -6.7  -3.08706   GATAAATTAATAGCG               TCTCG CTGG CGAGA                TCTTCCGGTGTAATT  59 305
SH05_RS00635  131592 ..  131616 + -14.3   -4.5442   CGGGGGTAAAATCCA          AACCGGGTGGT AAT ACCACCCGGTC          TTTTCTCATTACAGC 100 32
SH05_RS00645  133483 ..  133499 +  -9.4  -4.98672   CTTCTCCTGTCTGAA              GGCCGA CGCGT TCGGCC              TTTTGTATTTTTGCG 100 45
SH05_RS00650  135084 ..  135101 +  -2.7  -3.68256   CATCGACGCCCAATC             TGTTACA CTTC TGGAACA              ATTTTTTGATGAGCA  50 78
        ubiE NONE
SH05_RS00660 NONE
        ubiB  138159 ..  138180 +  -2.9  -4.51743   CATCGCTCAAGGCGG           GCCGTGTAA CGTA TAATGCGGC            TTTGTTTAATCATCA  61 47
        tatA NONE
SH05_RS00675 NONE
SH05_RS00680  139787 ..  139808 + -15.9  -2.63596   ACTGAAGAATAAATT           CAACCGCCC GTCA GGGCGGTTG            TCATATGGAGTACAG 100 29
SH05_RS00685  140873 ..  140883 +  -8.2  -3.23692   CGAAGTGGCTGACAC                 CGCG GGT CGCG                 TTGATAGTCGTGGTA  63 291
SH05_RS00695  142744 ..  142758 +  -2.7  -4.67651   TTTAACAACGGTAAA               AGCGC CTGAT GCGCG               TTTGTTTTGCCCTAT  64 17
         fre  143597 ..  143615 +   -11   -3.4252   TGGCAAACCATGCCC             GATGCGAC GCT GTCGCGTC             TTATCGTGCCTACAA  83 123
SH05_RS00715 NONE
SH05_RS00720 NONE
SH05_RS00725 NONE
        hemG  151534 ..  151552 +  -5.8   -3.4072   GAACAACGGCAAACA             CGCCGCCG GGT CAGCGGGG             TTCTCCTGAGAACTC  59 135
SH05_RS00735 NONE
SH05_RS00740  153491 ..  153503 +  -6.3  -3.57309   CTCAGGCCTACCAAA                TTTGC ACG GCAAA                TTTGAAGAGGTTTTA  63 28
SH05_RS00745  153633 ..  153666 +  -6.7  -4.49756   ATTAAATAAAAAATA     CTTCAGAGTGTACCT GCAA AGGTTCACTGCGAAG      TTTTGCTCTTTAAAA  76 52
SH05_RS00750  156699 ..  156709 +  -4.6  -4.11484   GGCTTAACCTTACAA                 CGCC GAA GGTG                 TTTTGGCGGATTGAG  63 12
SH05_RS00755  156908 ..  156957 + -24.7  -4.09117   GGAACTGCCAGGCAT CAAATAAAACGAAAGGCTCAGTC GGAA GACTGGGCCTTTCGTTTTATCTG TTGTTTGTCGGTGAA 100 28
SH05_RS00770  158659 ..  158669 +    -4  -4.12188   AATGATATCCTTCGT                 CATT CGT AATG                 TTTTCCGGATGATGG  61 75
SH05_RS00775 NONE
SH05_RS00780  160336 ..  160355 + -13.6  -6.01369   TGTAAATTACATAAA            GCCCGTGA ATAT TCACGGGC             TTTTTTTATTATTTA 100 46
SH05_RS00785  161934 ..  161944 +    -4  -3.80174   CTCATTCAGAGGCGA                 GTAA AAC TTAC                 TTATTCTGACGCTGT  57 59
SH05_RS00800  166246 ..  166271 + -19.1   -5.4505   GCTGAATATTTTAGC         CGCCCCAGTCA GTAA TGACTGGGGCG          TTTTTTATTGGGCGA 100 248
SH05_RS00810  168141 ..  168152 +  -3.6  -3.44051   AACGGATTGCCGCCG                TGGG CCTT CCCG                 TTCTGCTGATAACCC  51 39
SH05_RS00815  169814 ..  169869 +   -17  -3.21924   TTGTAGGCCGGATAA GGCGTTTA-CGCCGCATCAGGCATC TGAGCAT GATGCCTGATGCGGCGCTGGTCGCG TCTTATCAGGCCTAC 100 150
SH05_RS00845  176525 ..  176542 + -11.3     -6.13   TTTAGTCATAAAAAA             CCTGCCA GCGA TGGCAGG              TTTTTTTTTGCCTGT 100 49
SH05_RS00850 NONE
SH05_RS00855 NONE
SH05_RS00860  179834 ..  179865 +   -10  -2.75844   ACCGTATCAACCGTA      GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA       GTTTCACATCAGAAG  72 76
SH05_RS00905 NONE
SH05_RS00910 NONE
SH05_RS00915 NONE
SH05_RS00920 NONE
SH05_RS00925 NONE
SH05_RS00930  194718 ..  194737 +  -7.8  -2.74756   AGAGTAGCTGATGGA            GAGGGGCG GTGC TGCCTCTC             TCATTCAGGTCATTT  61 34
SH05_RS00935  195775 ..  195796 +  -4.5  -3.12351   TGTAAGGAGCATAAG           GAATGACAA AAAT TTTTCATTC            TTGAATATAAAAAAC  51 20
SH05_RS00940  196282 ..  196311 + -10.7  -3.30124   GCTGACAACGTGCGC       GTTGTTCATGCCG GATG CGGCGTGAACGCC        TTATCCGGCCTACAA  76 67
SH05_RS00975  203127 ..  203161 +  -9.4   -3.5782   AGCAATTAATTAAAA     TAAGTCCTGCGAAATA TAT TAAATTGCAGGACTTA     TTCATTTCGTGAATT  78 32
SH05_RS00980  204661 ..  204691 +    -6  -2.70946   TCACCTTCGCCTTCG       CGGGCGATGATGCG TTG TGCTTCATCGGCGG       TAATATGGTGTTGTG  51 358
SH05_RS01025  213929 ..  213942 +  -3.9  -3.59979   ACGTTTTTTACGTGG               TTTTC CGTC GAAAA                TTTAAGGTAAGAACC  53 7
SH05_RS01030 NONE
SH05_RS01035  215838 ..  215848 +  -6.8  -2.66106   CTCAACACCGTTACC                 GGAC GGC GTCC                 TGCATTGTTCCACTC  52 98
SH05_RS01045  217759 ..  217777 + -12.4  -5.67063   AGCTTAAAAAATGAA             CCATCGCC AAC GGCGGTGG             TTTTTTTGTGATCAA 100 83
SH05_RS01055  218968 ..  218991 + -13.2  -3.94853   CCTTAATCCCCACAG          CCGGATGAAC TAAC GTTCGTCCGG           TTTGCTATTGAGTTC 100 49
SH05_RS01060  219837 ..  219848 +  -7.2   -3.4252   TCAAATGCCGGATGC                GGCG TAAA CGCC                 TTATCCTGCCTGCAA  66 95
        cpxP  222632 ..  222650 + -14.6   -5.9873   CACCATCCCTGTCTT             CCCCCACA TGC TGTGGGGG             TTTTTTTTATCCTCA 100 66
        fieF NONE
SH05_RS01085  224971 ..  224987 +  -9.4   -4.7497   TTGTCAGCAATATGA              GGCGGA TTTCT TCCGCC              TTTTTAATCCCTCAA 100 211
SH05_RS01090  226117 ..  226139 +  -6.9  -5.72622   AGGATAATTATCAAA           CCCGGTGGT TTCTC GCGACCGGG           TTTTTTATTTGTCAC 100 48
SH05_RS01095  227308 ..  227321 +  -2.3  -4.18197   CGCACCTTCGAATGC               CGCAG CACC CTGAG                TTTTCAGTACCGCGT  58 377
SH05_RS01110  229054 ..  229101 +   -16  -2.84566   CTCTTACTGCTATTT TTTTCCGGG-ATTGTTATTTCCA CGA TGCAAATGACAATACCCGGAAAA TCCTTCTGAACTCTT 100 53
SH05_RS01115 NONE
SH05_RS01120  230023 ..  230063 + -10.3  -3.35224   GCTCCGCTGTCATAT  GGCCCGGTCGGCGACGTAA ATG TTTCGTCATCTGCCGGGTC  TCTTTCAGCAACTGT  72 56
SH05_RS01145  235093 ..  235108 + -10.4   -4.3953   GTAACGCAGAAAAAA              GGCACC TTGC GGTGCC               TTTCTTATCATTCAA 100 87
        rpmE  243516 ..  243529 +  -9.5  -5.64274   GGATTTCCGAAAAAA               GCGCC GCAC GGCGC                TTTTTTTGTGCCTGA 100 45
SH05_RS01200 NONE
        metL  248687 ..  248709 +   -12  -5.42605   AGTTTATATTTGCAG           TCCGGTTTGC TTT GCATACCGGA           TTTTCTTTTTCTTAC 100 176
        metF  249850 ..  249888 + -10.4  -2.60392   GCTGCCTCGAAATGA   GGGCGGGAAAATAAGGTT ATC AGCCTTGTTTTCTCCCTC   ATTACTTGAAGGATA  74 100
SH05_RS01220  252293 ..  252326 + -19.7   -3.9122   GCTGTAATCTGACCC     CGTTCAGCGGCTGCT TGCT GGCAGTCGCTGAACG      TTCTTTACCAGCGTA 100 34
SH05_RS01225  253560 ..  253594 +  -3.5  -3.80083   AGGTTTCCAGATTAG    GCACCC-GACGGTGAT CGAT GTTGCTGTCCGGGCGC     TTTAACTTCCATTTT  56 303
SH05_RS01255 NONE
SH05_RS01260  260222 ..  260239 + -10.5  -3.27525   CGCTTAAGTTCTTCT             CCCGCTC GCAA GGGCGGG              TTCGCTTTCCCACAG  78 34
        pflD NONE
SH05_RS01270 NONE
SH05_RS01275  264239 ..  264263 +  -6.3  -4.52347   TATGCGTGGGCCGCG          TCGGGCGACGT GTT GCTTCGCCAGA          TTTTGATATTGTTTG  74 516
SH05_RS01305 NONE
SH05_RS01310  273067 ..  273090 +  -5.2  -3.28001   AGCTTAAGTTTTGTT          GGCCGG-AGGC GCA GCTTTCCGGCA          TTGAATTTCAAAATA  55 34
SH05_RS01315  274517 ..  274535 +  -9.5  -5.24129   TATGTATAAATTTGA             GCCTGGC TTATC GCCGGGC             TTTTTTATGGCAAAA 100 50
SH05_RS01320  275845 ..  275867 +  -5.7  -4.11216   AATACCCAGAATCTC           TTTTGTTTC CCGAT GGAACAAAA           TTTTCAGCGTGCCCA  65 194
SH05_RS01330 NONE
SH05_RS01335  278405 ..  278436 + -11.6  -4.41494   TGCTGAGTAATCGGT      ATTATGCCGGATGC TGGC GCATCCGGCATGGG       TTTTACTTCGCGGTC 100 31
        btuB  281760 ..  281795 +   -14  -3.41125   CCTTCTGAACCACGT    CCCACCG-TGCTGGTGT TTG ACTCCGGCGTCGGTGGG    TTGTCGGTCTATGAC 100 33
SH05_RS01350  282660 ..  282678 +  -5.8   -3.4072   GAACAACGGCAAACA             CGCCGCCG GGT CAGCGGGG             TTCTCCTGAGAACTC  59 131
SH05_RS01355  284490 ..  284503 +  -2.3  -2.72471   AAGAAGCGTTCTTTG               CAGTG CTCA CACAG                ATTGTCTGATAGAAA  40 34
SH05_RS01360  284666 ..  284701 +    -7  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTCATC TTCG GGTGATGTTTGAGATA     TTTGCTCTTTAAAAA  69 61
SH05_RS01365  287801 ..  287814 +  -2.4  -2.78679   AGAACGCAGAAGCGG               TCTG ATAAAA CAGA                ATTTGCCTGGCGGCA  41 84
SH05_RS01370  287938 ..  287987 + -24.7  -4.09117   GGAACTGCCAGGCAT CAAATAAAACGAAAGGCTCAGTC GAAA GACTGGGCCTTTCGTTTTATCTG TTGTTTGTCGGTGAA 100 28
        murB NONE
SH05_RS01380  290251 ..  290265 +    -5   -2.6472   GAGTATTCGCTCCCC               TGCAAA TTA TTTGCG               TAGTCTGACCTCTTC  48 48
SH05_RS01395 NONE
SH05_RS01400  291793 ..  291813 +  -2.5  -3.05816   GCTTACCGGCTCGAA            TAAAGAGAG CTT CTCTCGATA            TTCAGTGCAGAATGA  43 81
SH05_RS01405  291935 ..  291945 +  -3.2  -2.56596   CCCGCTCCAAGATGT                 GCTG ATA TAGC                 TCAGTTGGTAGAGCG  42 32
SH05_RS01410  292061 ..  292075 +  -7.8  -2.57944   TTGCATTCAACAAGT               CGGGCA TGT TGCCTG               GTTGATGTGGTGATA  60 76
         tuf  293333 ..  293372 + -13.6  -3.72576   AACATTTGACGCAAT  GCGCACTAAAAGGGCATC ATTT GATGCCCTTTTTGCACGC   TTTCGTACCAGAACC 100 49
        secE NONE
        nusG  294504 ..  294542 + -13.3   -4.8543   GCGATTTAATCGTTG   CACAAGGCGTGAGATTG GAATA CAATTTCGCGCCTTTTG   TTTTTATGGGCCTTG 100 60
SH05_RS01430 NONE
SH05_RS01435  295773 ..  295809 +  -6.6  -2.87136   AAACTAATGCCTTTA   CGTGGGCGGTGATTTTG TCTA CAATCTTACC-CCCACG    TATAATGCTTAATGC  57 34
        rplJ  296667 ..  296680 +  -3.8  -4.07746   GCGATGCGAAAGAAG               CTGC TTAATC GCAG                TTATCTTTTTAACGC  60 18
        rplL  297146 ..  297171 + -17.7  -4.64766   AGAAATCAGGCTGAT         GGCTGGTGACT TTTT AGTCACCAGCC          TTTTTGCGCTGTAAG 100 65
        rpoB  301474 ..  301501 + -15.6  -2.65298   CGCTCAAACAGGTCA        CTGCTGTCGGGT TAAA ACCCGGCAGCGG         ATTGTGCTAACTCCG 100 45
SH05_RS01455  305781 ..  305794 +  -9.5  -5.60993   CAAATAACGTAAAAA               CCCGC TTCG GCGGG                TTTTTTTATGGGGGG 100 52
SH05_RS01460  306512 ..  306527 + -10.4  -3.53343   CTCAAAATAACAAAA              CCCACC TTAA GGTGGG               TTTCGCCAGAGAATT  80 31
        nudC NONE
        hemE  314956 ..  314967 +  -2.2  -2.63382   TCTGAACAGTATCAC                CGCT AAGG AGTG                 ATTATGGATCTCGCG  40 20
SH05_RS01510  315656 ..  315668 +  -4.8  -3.35597   AATTCAGGTAAACTG                CGGA TAATT TCCG                TATTTGAGAACTCAA  53 39
SH05_RS01515  316396 ..  316408 +  -4.1  -3.65351   GTGTATGCAGGAGAG                TGCTA TTC TGGCA                TTTCCGTCGCACTCG  54 146
SH05_RS01520 NONE
SH05_RS01525  317683 ..  317694 +  -5.8  -3.57263   TCACCAGTTGCTGTT                GCAG TGCG CTGC                 TTTGAGCGTAAAAGT  60 266
SH05_RS01535 NONE
SH05_RS01540  321138 ..  321158 +  -3.3  -4.05788   AGCGCGTTCATCCCA           CTCGGACG TTTTCT CGTCC-AG            TTTGCTTTCACAGGC  58 337
SH05_RS01565  325890 ..  325903 +  -2.3  -2.72471   AAGAAGCGTTCTTTG               CAGTG CTCA CACAG                ATTGTCTGATAGAAA  40 34
SH05_RS01570  326066 ..  326101 +    -7  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTCATC TTCG GGTGATGTTTGAGATA     TTTGCTCTTTAAAAA  69 61
SH05_RS01575  329132 ..  329142 +  -4.6  -4.11484   GGCTTAACCTTACAA                 CGCC GAA GGTG                 TTTTGGCGGATTGAG  63 12
SH05_RS01580  329354 ..  329374 + -11.8   -5.1287   ATCAAATTAGAAAAA            CCCCGGTC CATAA GGCCGGGG            TTTTTTGCATATCAA 100 41
SH05_RS01585  330121 ..  330131 +  -2.4  -2.70932   ACATAAATCCAACCG                 GCTG ATC CCGC                 TCATTAACCGCGACC  39 348
SH05_RS01595  331436 ..  331451 + -10.4  -5.63517   CAGCACCTTACCTCA              GGCACC TTCG GGTGCC               TTTTTTATTTCCGAA 100 71
SH05_RS01600 NONE
SH05_RS01605  334674 ..  334687 +  -8.1   -3.4252   CACGATGCCTGATGC               GACGC TTGC GCGTC                TTATCATGCCTACAG  68 105
        aceK  336757 ..  336769 +  -6.3  -4.04318   GATAAACCGTCTCTA                CAACA TTT TGTTG                TTTATGCTGTATCGC  68 269
        metH  343721 ..  343751 + -10.4  -4.29106   CACTTTTCCTTACAA       CAAACAGGGCGCTC AAT GAGTGCCCTGTCTC       TTTATTAATATGAAA 100 54
SH05_RS01630  345606 ..  345628 +  -7.7  -3.17075   GGCACTATGAACAAG           ATGCCGGAT CATGC ATCCGGCAA           TTCACTTAAAAACGG  63 88
SH05_RS01640  347551 ..  347562 +  -2.2  -3.44848   TGGATTAGCGCCTGC                CG-CG CGT CGACG                TATTTGCTGACCAGC  47 169
         pgi  351616 ..  351662 + -14.3   -2.5294   TGTAGGCCGGATAAG GCGTTCACGCCGCATCCGGCA ACCGA TGCCTGATGCGACGCGGTCGC GTCTTATCAGGCCTA  93 53
SH05_RS01670  353175 ..  353196 + -11.7  -3.32343   TGAAGGGATTAACCA           TAACCACAC TCCG GTGTGGTTA            TTCTGCCCCTCTGGA  86 94
SH05_RS01675 NONE
SH05_RS01680 NONE
SH05_RS01685  356700 ..  356727 +  -8.5  -3.56142   CTAAGTCATGGGAAA        GGTGCCAGT TTTCGCACTC ACTGGCACC         TTCATTCTTAATGGC  71 37
SH05_RS01695  357138 ..  357158 +  -5.4  -2.90714   CGCCGCCAGGCGCGG            CTTATCCG GCCTA CGGGTAGG            TATATCCGGCTTTGG  52 6
SH05_RS01700  357740 ..  357750 +  -2.4  -4.58419   TGGACAGGAAGATTA                 CAGC GTA GCAG                 TTTGTTGTGTTTTCT  63 72
SH05_RS01730  364880 ..  364890 +  -6.8  -2.62184   ACAAAACACACAAAG                 CCTG TCA CAGG                 TGATGTGAAAAAAGA  56 48
        lamB  366339 ..  366386 + -12.2  -3.53811   GATGCGACGCTTGCG CGTCTTATCAGGCCTACA ACGGCTGTCAAA TGTAGGCCGGATAAGGCG TTTACGCCGCATCCG  91 95
SH05_RS01740  367465 ..  367484 + -11.4  -5.71983   GATTTTGCAACAACT            GGTGCGTC TCCT GGCGCACC             TTTTTTTATGCTTCC 100 58
SH05_RS01745 NONE
SH05_RS01750  369355 ..  369365 +  -3.2  -3.66156   GTTTTACCACTTCAT                 GCGA TTG TTGC                 GTTTTTGTTGCGTAT  51 139
        ubiC NONE
        ubiA  370859 ..  370876 + -11.3  -4.35604   TGATGATGTAAAAAA             GCCGGAT GATC ATCCGGC              TTTCTTCTGGGTTGC 100 38
SH05_RS01770  373969 ..  373990 +  -2.4  -4.33851   TTTTGGATAACCCTT           CCAGA-ATT CGATA AATCTCTGG           TTTATTGTGCAGTTT  58 31
SH05_RS01775  374695 ..  374718 +   -16  -4.94262   AACATATCTCTGAGA          CCGCGATGCC GCCT GGCGTCGCGG           TTTGTTTTTCATCTC 100 39
SH05_RS01780  376138 ..  376158 +  -2.6  -2.69964   CTACACTTAATCTCA            CGTTCA GAAGAAAAG TGAACG            TACTCTCATTCACAA  41 84
SH05_RS01785  376716 ..  376728 +  -9.1  -3.28791   GAGCACATAACTGTT                GGTGG ATT CCACC                TTATGCACAAAACCT  69 337
SH05_RS01795 NONE
SH05_RS01800  378306 ..  378327 +  -9.5   -5.4251   AGGCATTATATAAAA           GGACCCAAT ATTT ATTGGGTTC            TTTTTTCTCTATCAA 100 67
SH05_RS01805  379695 ..  379718 + -13.1  -4.43681   TAGTCAAATTCACCA          CGCCCTGCG CACCGT CGCGGGGCG           TTTTGCTGTTAAATC 100 56
        pspG  380175 ..  380199 +   -10  -4.77775   CGAACTATAAAAAGA          AAGGGCTTCC CAGGT GGAAGCCCTA          TTTCTTTTATGGAAT 100 160
SH05_RS01820 NONE
         alr  383931 ..  383951 +  -3.9  -3.98661   TGCTCTTATAAAGGT            CGTGCCTCT GGC GGATGTACG            TTTGTCATGAGTCTC  58 137
SH05_RS01830  385515 ..  385527 +  -4.9  -2.78935   TCGGGTTTGTTACGA                TAGAA TAT TTCTA                TATCCTCAAGAATAT  46 275
        aphA  387086 ..  387120 +  -6.5  -5.52384   AATTCAGAATACTGA    CAG-A-GCGGGAGAGCG TGA TGCTCTCCCGAATGCTG    TTTTTTTAATCACAC  91 26
SH05_RS01845 NONE
SH05_RS01850  388029 ..  388061 +  -4.8  -2.93393   ATCGGCTTAAGGAAG     CGT-GCCGTGTGTGA TGCT TCGCACTCCGCGACG      GTTTCTGGCGTACCG  50 82
SH05_RS01860  391692 ..  391708 + -10.1  -3.39505   AGCCATAAAAAAGAA              GCCTCCG TTA TGGAGGC              TTCTACGTATCAGGT  76 98
SH05_RS01870  394172 ..  394196 +  -6.5  -2.80816   GCCAGTAACAGGCGG         CG-TTGGCGA ATGTAA TCGCCAAGCG          TCTGATGCGTCACCG  51 182
SH05_RS01880  394888 ..  394912 + -14.4  -4.67651   GGAAGATGAACAAAA          CTAAAGCGCC ACAAG GGCGCTTTAG          TTTGTTTTCCGGTCT 100 22
SH05_RS01885  396802 ..  396833 + -12.4  -4.37658   TCTTTCATCGGATTC      TGAAAACGGGTGGC AATG GCTGCCCGTTTTTA       TTTTCTCCGCACATT 100 41
SH05_RS01890  398628 ..  398645 +  -9.9   -3.5774   AGGTAATCTGAAAAA             GGTGCAA TCTT TTGCACC              TTTAACAGGTTAGCT  80 66
        nrfA NONE
SH05_RS01920 NONE
SH05_RS01925 NONE
SH05_RS01930  408431 ..  408444 +  -2.3  -2.98304   GTATTCCTTCCTGAA               GTCGG TTTT CTGGC                GTTGTTGTTAAGTCT  42 66
SH05_RS01935 NONE
SH05_RS01940 NONE
SH05_RS01945  411211 ..  411223 +  -3.4  -3.84246   CAAATAAAAATCTTT                CCAT AACAA ATGG                TTATTCATTAATCCT  53 139
SH05_RS01950  413244 ..  413278 + -10.7  -3.08867   CGCATCCGACATCAA     TGCCTGATGCGACGC TTGCC GCGTCTTATCAGGCC     TATCTTAACCGTTGG  79 517
SH05_RS02025 NONE
SH05_RS02030  431477 ..  431489 +  -6.2  -3.53811   GACAGCCACGCCACC                CGGC TGTGT GCCG                TTTCCAGCAGATAAC  58 458
SH05_RS02115 NONE
SH05_RS02120  447188 ..  447246 +  -3.2  -3.62522   AACTGCCCAATTCAG GCGTCAACTGGTTTGATTGTACATTCC TTAACC GGAGGGTGTAAGCAAACCCGCT-ACGC TTGTTACAGAGATTG  51 128
SH05_RS02125  448896 ..  448912 +    -3  -2.58999   TCTTATCAGGCCAAT              TGAACT CTTAA GGTTCA              CTTAATCTCTGACGC  42 70
SH05_RS02130  449083 ..  449100 +  -6.3  -4.07568   ACCCAGGCCCGCGTG             CCGG-AAG TCT CTTGCCGG             TTTTGCAGGAAAAAC  68 56
SH05_RS02170  458657 ..  458669 +  -3.3  -3.88291   TTTACTGCTGCTTCA                CGCAG GAT CTGAG                TTTATGGGAATGCTC  53 14
SH05_RS02175 NONE
SH05_RS02180  461659 ..  461689 +  -3.3  -2.52519   CAATAGCTAACGAAA       ATGGCCTGATG CGATATGTT TATCAGGCCAC       GTCTTAATGTAATGC  42 47
SH05_RS02200  466386 ..  466410 +  -4.9  -4.07568   TCCACTGGCACAGTG          TGCGTAACGTC TGC GGCGTTAAGCC          TTTTGGCAAGCGACG  62 226
SH05_RS02215 NONE
SH05_RS02220  469494 ..  469521 +  -6.4  -2.98491   CCATCATCTTATTCC        TCAGTGTTCTTA AGAT TAAGATCATTGA         TGTATGATATGAATT  56 315
SH05_RS02225 NONE
SH05_RS02230  470007 ..  470030 + -15.4  -3.35813   TTGCGGAACGATGAA          CGAAGCAGTC GCCT GACTGCTTCG           TTCATTAAAGTGAAA 100 104
        fxsA  485996 ..  486028 +  -4.8   -5.0925   GGATTAATGTCGAAA      CGCCGGATTATG TGGTTATGC CATTTTCCGGCG      TTTTTCGTTTTGGCA  80 34
       groES NONE
       groEL  489548 ..  489571 + -12.4  -5.50723   GCAGAAATAAACAAA          CCCCCGGGCA GAAA TGTCTGGGGG           TTTTTCTTTTGGTCA 100 55
SH05_RS02310  490386 ..  490397 +  -5.8  -4.02911   GAAATCAAGCATTCG                GCGA GTGA TCGC                 TTCTATTTCTTTACC  68 402
SH05_RS02325  493117 ..  493148 +   -13  -3.65046   GCGTGAAGTAATGCG      GTTGTGGTGCGGCC TGCA GGCTGCACCATCAC       TTATTCAGGTCAGAG 100 30
SH05_RS02330  493273 ..  493285 +  -3.3   -2.6432   TCGGCAACTCCATCT                CTCGC GCT GCCAG                CTAATTTTTCTTCTC  42 9
SH05_RS02335  493550 ..  493581 +    -8  -5.26316   GCGCAGCAATAAGCA      ATAACGGTACGACA GCTG TGTCGTGCCGTTTG       TTTTTTCTGCGATAG 100 29
SH05_RS02340  494320 ..  494330 +  -3.2  -3.42197   TCTGCTGCCACATTC                 CTCT GTC AGGG                 TTATAGCCTTTATTA  49 306
SH05_RS02375  500613 ..  500639 +  -7.3  -3.05596   GTATTGGTTTTTACG        CTGC-CTGCTCA ATGT TGCGCAGTGCAG         TTCAGTGGGCACGTG  61 171
SH05_RS02380  502175 ..  502198 +  -3.7   -2.8655   CAAAAAATCCGCAGT          GGGCGGTGG AATAAC CCGATGCCC           TATCGTCTACCTGAC  45 12
SH05_RS02385 NONE
SH05_RS02390  503219 ..  503232 +  -5.9  -2.78384   TCTTCGCTATTGGCA               TCGGC AGGG GCCGG                TATCGTCAACACCAC  51 379
SH05_RS02410  509039 ..  509053 +  -4.2  -2.53759   AATCCACTTGCGGCG               GCGTGA TTT TGACGC               TAAATTGAACGTCTT  45 68
SH05_RS02415 NONE
SH05_RS02420 NONE
SH05_RS02425  509528 ..  509555 +  -3.4  -5.27206   CTCTCAATAAAATAT        CCA-CAGCGACGC GAT GCGTTATTGCTGG        TTTTTGTTGTCTCTG  79 48
SH05_RS02435 NONE
SH05_RS02440 NONE
SH05_RS02445 NONE
SH05_RS02450 NONE
        miaA NONE
         hfq  517464 ..  517496 +  -7.1  -2.54504   CGGGCTGTTTTTTTA     CA-CGGGGAGC-CAG CGATC CTGCGTTCCCCGCTG     ATCTATTTAGAGGGT  58 46
SH05_RS02465 NONE
SH05_RS02470 NONE
SH05_RS02475  521181 ..  521207 + -13.1  -5.38839   TACAGGTCAATAAAG        CCACCG-CATCC TCAG GGATGTCGGTGG         TTTTCTTTTTCTATA 100 55
SH05_RS02480 NONE
SH05_RS02485  522887 ..  522921 + -11.6  -3.10975   CAGTGTGATACATTG    CTGTGTCGGGTAAGC CATTAC GCT-ATCCGACACAG     TGTTAAATCCTCGCT  84 80
SH05_RS02490 NONE
SH05_RS02495  525949 ..  525968 +  -8.6  -3.20723   GCAGAGTGATCAATA            CCCTCTTT AAAA GAAGAGGG             TTAGATTGCTGACAA  67 32
SH05_RS02500  526874 ..  526891 +  -9.9  -6.32216   CAGAATTATGAAAAG             CCATCCA GATT TGGATGG              TTTTTTTTTGTCTAT 100 46
SH05_RS02505 NONE
SH05_RS02510  528104 ..  528130 + -12.4  -2.79004   GGGCGAGTAATTTTT         TTGCCAGCCT CGCTAAA AGGCTGGCAA         CTATTTTAAGGATAA  89 31
SH05_RS02515 NONE
SH05_RS02520 NONE
SH05_RS02525 NONE
SH05_RS02530  531074 ..  531103 + -13.7  -3.14132   TCTGTCATGAATCCA       TGGCAGTGACCAT ACTA ATGGTGACTGCCA        TTGATGGAGGGAGAC 100 61
SH05_RS02535  533108 ..  533150 +  -3.5  -4.98531   GGATAAGTCACTAAT TGCAGC-GAGGGTGAGGCAA GTAA TTGTTTCATCGTCAGCTCCA TTTTTCGTTTCCCCA  76 386
SH05_RS02550  535033 ..  535045 +  -4.7  -3.57792   CGCCCGGATTAACCA                GCTGC GAG GCCGC                TTTAGCGATACGTAC  55 510
SH05_RS02565  538217 ..  538231 +  -2.8  -4.48987   AACTGGCAGAACAGT               CTGCTT AAT AAGGAG               TTTTGATTATGACCG  61 18
SH05_RS02570 NONE
SH05_RS02575 NONE
        ulaD NONE
SH05_RS02585 NONE
        araD  541441 ..  541453 +  -9.1  -3.46435   TACGTGGTAGTACGT                TGCGC CTT GCGCA                TCTGTTTCTTCATTT  71 233
SH05_RS02600  541827 ..  541837 +  -2.4  -3.27525   AGGGGAGATTTATTT                 CGGC TCT GCCC                 TTGAGTTTAGCGAGG  45 11
        rpsF NONE
SH05_RS02610 NONE
        rpsR  542916 ..  542926 +  -2.4  -2.50307   TCGCCATCAGTAATC                 GGTC ACG GTCC                 ATTAATACGACTTTG  39 28
        rplI  543425 ..  543453 + -16.1  -3.33352   TATTCAACGAGACGT        AAAAACGCCGACC ATT GGTCGGCGTTTTG        CTTTCTATTTTTCGT 100 46
SH05_RS02630  545005 ..  545035 +  -7.4  -4.13014   GTATCAATGGTTAAG       CCCGTCACCACGCC GCT GGCGTTCTGGCGGA       TTTTCACCATCTGCC  74 88
SH05_RS02640  546581 ..  546591 +    -4   -3.1372   AAATTAACATTAGAT                 CTAA ATC TTAG                 TATTCATCCCGCGTA  49 204
SH05_RS02645  548136 ..  548160 + -16.5  -4.19817   TAACCGCATTATCAT          GCTGGATGGCG CAA TGCCATCCAGC          TTTTAGATCACTCAC 100 38
SH05_RS02665  551410 ..  551436 + -12.3  -2.60798   AAGATGCGCCAGCAT         CGCATCCGCCA ATAAA TGCCGGATGCG         GTTGATGATTTATAG  88 95
SH05_RS02675  554345 ..  554387 + -10.1  -3.86346   GTCTATTTACTAAAT TCA-GATGGCAGAAACAG TGTATTTC CTGATTCTGCCATCCTGA TTTCTCCCAACCTAA  84 28
SH05_RS02680  555493 ..  555523 +    -7  -2.53831   AACTCAGAGACTTAA       TTCCCCTATC CCATAGATAAC GATAGGGGAA       AATTATTTTTGCAGA  55 26
SH05_RS02690  556682 ..  556702 + -16.9  -3.50335   TATGCAGTAATAAGA            CGGCTCCTG ATT CAGGAGCCG            TTGATGTTTCTGGGG 100 67
SH05_RS02705 NONE
SH05_RS02710  560944 ..  560955 +  -4.4  -2.69546   ACAGTTTTACATCGG                TCTG GGGC CAGA                 ATTATGAGTTTATGG  45 7
SH05_RS02715 NONE
SH05_RS02720  565090 ..  565114 + -10.8  -5.00616   ATAAGTAACCATATG         CATACGCCACC TTCG GGTGGCGT-TG          TTTTTTGCGAGACGA 100 33
SH05_RS02725 NONE
SH05_RS02730  566195 ..  566213 +  -5.2  -4.07568   ACCAGTTTCGCATCT             TCACCGGC TTC GTCGGTCA             TTTTCAGAACGCCAA  65 331
SH05_RS02740  567848 ..  567862 +  -7.1  -3.42996   ACTGAAGCCTGATGC               GACGC TTACC GCGTC               TTATCATGCCTACTG  66 108
SH05_RS02745 NONE
SH05_RS02750 NONE
SH05_RS02755  571816 ..  571835 +  -6.5  -3.40371   TTCTTCACCCCGTTC            GGAAACT TAATGT AGTTTCC             TTCGTTGATGGAGTA  56 416
SH05_RS02765  574036 ..  574065 + -13.5  -2.74792   ATATAGTATGCGTAG       GCCGGATAAGGCG TTCA CGCCGCATCCGGC        ATTTGAGCATAGTGC  93 56
        pmbA NONE
SH05_RS02780  576710 ..  576743 + -14.7   -3.4072   ATCGTTAATTCCTCA     TTTCCCTGTTGCCTG CACT CAGGTAACAGGGAAC      TTATCATCGCAAATG 100 33
SH05_RS02810  587342 ..  587361 + -10.7  -3.65827   TGTCATCAGACTTAA            TCCGGGC ATGATA GCCCGGA             TTTCCATCAAGATTA  84 199
SH05_RS02835  590142 ..  590167 +  -6.1  -2.60723   CGTGAGTAAACAAAA         CCCAGACATCA TGGA TAATGGCTGGG          CTTAATTGAGCGTAG  54 475
SH05_RS02850 NONE
SH05_RS02855  592168 ..  592199 +  -7.4  -3.85698   ATGGCGTGATGACTT      TTCGCCGTAAAT AACTCAAG GTTTACGGCGAG       TTTGTGAAAAGAGCG  70 32
SH05_RS02860  594107 ..  594137 +  -9.8  -3.87815   TGCATAAAATAATGT       GATGCCGGGA TGGTTTGTATT TCCCGGCATC       TTTATAGCGATAGCA  84 34
SH05_RS02870  595851 ..  595875 + -15.7  -5.47399   TTGTTAATGTTCGAA          TGCCCGCGAGT TGA ACACGCGGGCA          TTTTTTTAGAGTTCG 100 140
SH05_RS02880  597785 ..  597804 +   -15  -3.72073   GTAAGAGATAAAAAA            GGCCGGAG CATG CTCCGGCC             TTCGTTTTCATCACT 100 37
SH05_RS02900 NONE
SH05_RS02905  605261 ..  605284 +   -14   -3.9461   AACCGAATGAACGAA          TAAAGGGAGC GAAA GCTCCCTTTA           TTATTGTTAGCAAAG 100 39
        idnK  612386 ..  612401 +  -6.8  -3.05562   GCCAGTGCTTTCAGT              GCCTGCG GAT CGC-GGC              TATTCACCACTTTAT  56 378
SH05_RS02945  613351 ..  613366 +    -9  -5.64274   AAAAGTATGTAAATA              GACCTC AACT GAGGTC               TTTTTTTATGCCTGA 100 40
SH05_RS02950  614791 ..  614810 +   -15  -2.88832   TTAAAACAGTAATCA            TCCCGGGC AAAT GCCCGGGA             ATTATTCTAGGATTA 100 29
SH05_RS02960 NONE
SH05_RS02965  616537 ..  616548 +  -2.2  -3.06501   GGTTAGTTATCTTCG                TCTG TCAG CGGA                 TTGAATGGCGGTATA  42 215
SH05_RS02980  618065 ..  618083 +  -5.3  -3.53343   GCCCGCATAACCCGT             TGACTTC CTGAA GAAGTCG             TTTCAGGGAGAGATT  57 15
SH05_RS02985  618441 ..  618456 +  -5.4  -3.85698   TCTTCGGGTAAGTGA              TACCTG CCGT CAGGTG               TTTGTGCACCGGGCC  61 116
SH05_RS02990  618939 ..  618968 +  -9.3  -4.59109   CATCTTGGTTCTGTA       ATGCCAGTCAGTT AAGC AACTGACTGGCTC        TTTTTCGGGGCTGTG 100 42
SH05_RS03000 NONE
SH05_RS03005  623261 ..  623286 +  -5.4  -4.62984   AATGTAAAAACTATA         CGCCTCTTGA TTTAAT TCAGGAGGCC          TTTTATGTATGATCA  73 34
SH05_RS03015 NONE
SH05_RS03020  624602 ..  624630 +    -4  -3.91897   TCCCATGTCAGTGAT        TTTCTGAGTT CTGACGGTA AACTCAGGAA        TTTGTCGGTAAGAGC  59 317
SH05_RS03035  626717 ..  626727 +  -5.4  -2.94695   CCAGCCGCAGTACAG                 GTCA CGA TGAC                 TCTGGTTAATGATAC  52 102
SH05_RS03040  627171 ..  627193 +  -6.2  -5.21709   ACCAGCTCCGTGAAT           GTCCGCTCTG GCA CAGAGCGAAA           TTTTTTGATCTCCCC  87 216
SH05_RS22965  635839 ..  635853 +  -7.8  -2.64616   TTCTGAGCCTGCTGT               CGGCCT TTG AGGTCG               TGGTATAGATGACGG  60 3
SH05_RS03090  636149 ..  636172 + -12.5  -3.95647   CTAATCAATAAAATC          CTGCCCCAT ATCTAC ATGGGGCAG           TTGTTCATTCTTTTA 100 103
SH05_RS03180 NONE
SH05_RS03185  653305 ..  653315 +  -4.6  -4.63542   AATAACAACGGTTTA                 TGCG GTG CGCG                 TTTTTCACCCTTGTG  71 452
SH05_RS03205  656928 ..  656938 +    -4   -4.7878   AAAAACTAAAGATCT                 TAGT TTA ACTA                 TTTGTTTTATAAATA  71 87
SH05_RS03215  658769 ..  658798 + -10.9  -5.10064   TTAATGTAATTGACT       GATAGCCACATCAC TCC GTG-TGTGGTTATC       TTTTTATCTATTGGG 100 388
SH05_RS03220 NONE
SH05_RS03225  660600 ..  660611 +    -3  -3.62411   TTATGATATGGACAG                TTTG GCCC CAAA                 TGTTTCATCTTTTGG  51 369
        fimA  661374 ..  661387 +  -3.1  -3.83026   TATTTCTATTAGCGT               CGTTG CTGC CAATG                TTTGCTCTGGCCGGA  53 121
SH05_RS03240 NONE
SH05_RS03245 NONE
SH05_RS03250 NONE
SH05_RS03255 NONE
SH05_RS03260 NONE
SH05_RS03265  667534 ..  667560 + -14.4  -3.10537   AGACTTTGTCATCAG         TCTGAGCCTGCC ATT GGCAGGCTCTGG         TGTCCTTTTACGCTA 100 234
SH05_RS03275 NONE
SH05_RS03280  670442 ..  670466 +   -15  -3.58329   AGCCGTTAATATCCA          CCGGCATGGC TGCGC GCCGTGCCGG          TTCCTTCTTCCTTGC 100 32
SH05_RS03285  672001 ..  672032 + -12.5  -4.94243   TACCCTACAGACTTA      CTGGTCAATCAAA CTGATA TTTGGTTGACCAG       TTTTCGTTTTTTTGC 100 50
SH05_RS03295  672978 ..  673002 +  -9.3   -4.2528   GACTTATTATAATAA          GCGCAAGGG TAAACGT TCCTTGCGC          TTTCTTAAATTAAGA  88 39
SH05_RS03315 NONE
        iraD  675088 ..  675110 +  -4.1  -3.05384   ATGCATAGGCCTGAA           TCGGGATCA CCAGT TCGTCCCGA           TTCAGTACAACGAGC  46 113
SH05_RS03345  679194 ..  679213 +  -5.6  -3.16676   GCCGCGCCGCAGAGA            GTGGCGCT GGCA AGCGCCGA             TGTTCCATTGCTGAG  52 120
SH05_RS03385  687665 ..  687678 +  -5.3  -2.60723   GGCATCCGGCATGAA               CAAAG CGTA CTTTG                CTTAATTCAGGCTGG  49 157
SH05_RS03395  689675 ..  689711 + -11.2  -2.64981   CTCATGTCGATAACG   GTCAAAAAACGCACAGT GATT ACT-TGTGTTTTTTGAC    TGACTTTACAACTCT  76 170
SH05_RS03400  691726 ..  691746 +  -5.4  -3.08197   CACGGTACACCGCTC            GACAAAGG CTGGC CCTTTGGC            TATGTGTATGTGAAC  53 205
SH05_RS03405  694476 ..  694506 + -11.8  -4.53705   CGCCTCCTGATGATG       AGCCGCTCCCGATG TGG TGTCGGGAGCGGTA       TTTTCTATAAAACTT 100 31
SH05_RS03445 NONE
SH05_RS03450  707657 ..  707667 +  -2.4  -4.18018   GTTTATCCGCCGACT                 CCAG CAG CAGG                 TTTTCCATCACGCGG  58 280
SH05_RS03475  712961 ..  712982 +  -5.8  -2.77899   TACGCCAGTGCCCCC           GCTGCGGT GACGCA ACCGCAGA            TGATTAGTGCCAGAC  51 135
SH05_RS03490  716579 ..  716605 +  -5.8  -6.32017   ATTAAAGTTGCCATG         CAGCGTCCGG GGAAGTG TTGGGCGCTG         TTTTTTTTGTTTCTT 100 53
SH05_RS03525 NONE
SH05_RS03530  724536 ..  724547 +  -2.2  -4.36914   GTGGATTATCTTCAC                CGTT CGTG AGCG                 TTTTCTCAAAAAAGA  60 185
SH05_RS03540  725951 ..  725963 +  -4.9  -3.14132   TTCGCATACCATCAA                TTCTT AAA AAGAA                TTGCTACCACGGAGG  51 397
SH05_RS03565 NONE
        rimI NONE
SH05_RS03575  728918 ..  728932 +  -9.2  -3.14132   TCGTTTTCAACAAGC               GCGGCG CGA TGCCGC               TTACTCAAGAAGAAA  72 81
        prfC  730553 ..  730578 + -14.7  -2.68338   ATTAATTCTTGCCTC         CAGGGCGCGGT AGCC GCTGCGCCCTG          TCAATTTCCCTTCCT 100 36
SH05_RS03585  731610 ..  731624 +  -4.2  -2.62396   TAAAAATATCGCATT               GAGTGA TTT TCACGC               TCATATCAAGCGATG  45 95
SH05_RS03590  731860 ..  731878 + -14.6  -4.28049   AAAATTTTATCCAAA             GCCAGTCC AGC GGACTGGC             TTTTGCGGTTTTAGC 100 57
SH05_RS03595 NONE
SH05_RS03600  733918 ..  733957 + -11.5  -2.62003   CGGATAAGGCGTTCA  CGCCGCATCCGGCAGTTG GCGCA CAA-TGCCTGATGCGACG  CTTGTCGCGTCTTAT  80 144
SH05_RS03615  736821 ..  736831 +  -3.2   -3.3761   AGAATACTAACAAAC                 TCGC AAG GTGA                 ATTTTATTGGCGACA  47 89
SH05_RS03620 NONE
SH05_RS03625  739099 ..  739109 +    -4  -3.84451   CGAATAACGGTATAC                 TGAT CTG ATCA                 TTTAAATTTGAAGCA  57 34
SH05_RS03630  740374 ..  740393 + -10.7  -4.38927   GTTCTGATGGATTTG            GGCGGAG CGTTGA CTCCGCC             TTTGTTATGTCACAA 100 34
        deoD  741175 ..  741198 +   -16  -4.87037   CGATTGCCTTGTGAA          GCCGGAGCGG GAGA CTGCTCCGGC           TTTTTAGTATCTATT 100 59
SH05_RS03640  742619 ..  742640 + -12.3  -2.52464   CAAATCGAAGAGAAA           GTTGCCCGC ATGG GCGGGTAAC            TACCTTACAGCCCCC  86 5
        serB NONE
SH05_RS03660 NONE
SH05_RS03665 NONE
SH05_RS03670  748354 ..  748383 + -13.5  -3.08581   TTGCTGGTTTTGTAG       GCCGGATAAGGCG TTCG CGCCGCATCCGGC        ATTTTACGCATTACT 100 92
SH05_RS03680  752220 ..  752236 +  -4.5  -2.61144   ACTGATCCGCACGTT              TATGATA TGC TATCGTA              CTCTTTAGCGAGTAC  48 36
SH05_RS03685  753118 ..  753133 +  -8.2  -3.76224   TTGGCTACCCGATTT              CGTGCG CCAG CGCGCG               TTTCCTCACTGCCAA  72 518
SH05_RS03695  754253 ..  754265 +  -6.3   -3.1829   CTGGGCTAACGCGGT                GGTAT AGA ATACC                TCTTGCTCGTCGTCT  54 295
SH05_RS03705 NONE
SH05_RS03710 NONE
SH05_RS03715 NONE
SH05_RS03720  759086 ..  759103 + -12.7  -5.76949   GTTGAAAAATAAAAA             CGGCGCT AAAA AGCGCCG              TTTTTTTTGACGGTG 100 42
SH05_RS03730  760271 ..  760281 +  -2.6   -3.4252   ATTGTCGAGATTTAT                 TTTT TAT AAAA                 TTATCCTAAGTAAAC  48 215
SH05_RS03735  761298 ..  761319 +  -4.5  -2.91322   TGAGTAAATTAAAAT           TTTATTGAC TTAG GTCACTAAA            TACTTTAACCAATAT  50 156
        thrL  761471 ..  761492 +   -13  -6.06723   GAAACACAGAAAAAA           GCCCGCAC CTGACA GTGCGGGC            TTTTTTTTTCGACCA 100 41
        thrA NONE
SH05_RS03750 NONE
SH05_RS03755  766235 ..  766261 +    -8  -5.24129   CATTATCTCAATCAG        GCCGGGTTTGC TTTTAT GCAG-CCCGGC         TTTTTTATGAAGAAA  95 49
SH05_RS03760 NONE
SH05_RS03765  766755 ..  766788 + -11.7  -2.62043   CAATCCGGCATTCAG     CGCCTGATGCGACGC TGGC GCGTCTTATCAGGCC      TACGTTAATTCTGCA  80 59
SH05_RS03780  770389 ..  770418 + -12.9   -2.5294   CTGCTGTAATCATTC       TTAGCGTGACCGG GAAG TCGGTCACGCTAC        CTCTTCTGAAGCCTG  90 32
        mogA  771150 ..  771164 +  -4.2  -3.13164   ATCGGCAGAACGGTG               CGACCA AAC TGCTCG               TTCAGTACTTCACCC  47 91
        dnaK  775296 ..  775333 + -17.1  -3.25823   AACGGGTAATTATAC   TGACACGGGCGAAGGGGA ATT TCCTCTCCGCCCGTG-CA   TTCATCTAGGGGCAA 100 51
SH05_RS03810  776579 ..  776600 +  -4.4  -3.52073   GTGGCGGGGATCACT           CCCATAAG CGCTAA CTTAAGGG            TTGTGGTATTACGCC  52 115
SH05_RS03815  778159 ..  778191 +  -4.9  -4.64844   TTCAGCATATAGGAG     GCCTCGGGTTGATG GTAAAA TATC-ACTCGGGGC      TTTTCTCTATCTGCC  71 436
        nhaA  779862 ..  779881 + -10.7  -4.59414   CAGGACGGTTTACCG            GGGAGCC ATAAAC GGCTCCC             TTTTCATTGTTATCA 100 41
        nhaR  780818 ..  780844 +  -5.1  -2.62043   GTGCGTTAATCGGCA         GCTCCCCCA AAGTTAAGG TGGGGGAGA         TAGATTAGTTGTACA  49 32
SH05_RS03845 NONE
SH05_RS03850  783531 ..  783544 +  -3.7  -3.54475   TTTGGGCTAACAAAA               CCGGC TTAA GCCTG                TTATGTAATCAAACC  51 17
        ileS NONE
        lspA  786920 ..  786969 + -18.1  -3.53811   GATGCGATGCTGACG CATCTTATCCGGCCTACAGATTGC TGC GAAATC-GTAGGCCGGATAAGGCG TTTACGCCGCATCCG 100 53
SH05_RS03865 NONE
        ispH  788447 ..  788466 +  -9.3  -5.24129   TAAGTTATGCGAAAA            TGCCGGT CTTGTT ACCGGCA             TTTTTTATGGAGAAA 100 54
SH05_RS03875  789415 ..  789442 +  -6.4  -3.70149   CTGTCACATGTTATT        GGCATGCAGTC ATTCATC GACT-CATGCC        TTTCACTGATATCCC  63 42
SH05_RS03880  790377 ..  790396 +  -2.2  -4.35483   TGTACTTGATCTCAA            TAATTTGT AACC ACAAAATA             TTTGTTATGGTGCAA  58 16
SH05_RS03895 NONE
        carB  795283 ..  795302 +   -10  -6.07627   ATCGAATAACTAATA            CGGTTCTC TGAT GAGGACCG             TTTTTTTTTGCCCAT 100 79
SH05_RS03910  795995 ..  796017 +  -8.4  -4.33165   TAGGCGTCACATCCG           TCGTCCCC TGCAAAC GGGGGCGA           TTTTCCTCCATTTGC  82 134
SH05_RS03945 NONE
SH05_RS03950  805296 ..  805307 +  -5.8  -3.58037   GAAGATCCTTCCGGC                GCTG ACCG CAGC                 TTTAGCGCGTTGATC  61 1
SH05_RS03955 NONE
SH05_RS03960  806928 ..  806938 +  -2.4  -2.83798   CCTTTGGTGTGGAGT                 TCCG TTA CGGC                 TGATGTTGGTTTGAT  41 12
SH05_RS03965 NONE
SH05_RS03970 NONE
SH05_RS03975  810952 ..  810964 +  -3.3  -3.72363   ACATCATCCTCGCAC                CAGTC GAC GACGG                TTTACGCTTTACGTA  51 155
        folA  811518 ..  811550 + -15.6  -2.58999   GAATTTACGGCTAGC      GCCGGATGCGACGC CGGTC GCGTCTTATCCGGC      CTTCCTATATCAGGC 100 50
        djlA  819409 ..  819428 + -11.4  -3.90744   TGCCCACGATTAAAG            GTGGCCGC CCTG GCGGTCAC             TTCTTTGAGAAAAGG  95 64
SH05_RS04020  820810 ..  820825 + -10.4  -4.03234   GGCAGAAACAAAAAA              TCCCCG GACT CGGGGA               TTTATGTACAAGAGG  89 365
SH05_RS04055  832506 ..  832518 +  -4.8  -3.25088   AGTAGCATAGGGTTT                GCAG AATCC CTGC                TTCGTCCATTTGACA  53 75
SH05_RS04060  833336 ..  833350 +  -7.1  -3.30124   CGGGTTGCCTGATGC               GACGC TTGCC GCGTC               TTATCAGGCCTACAA  64 55
SH05_RS04085  838756 ..  838776 +  -9.7  -6.17268   GTGTAAAATCACCCG            CCAGCAGAT TAT ACCTGCTGG            TTTTTTTTATTCTCG 100 71
SH05_RS04090  840475 ..  840485 +  -4.6  -4.72272   ACGAAGTCCGGGTTT                 GGCT GTT GGCC                 TTTTTCATCCAGAAA  72 510
        leuO  846509 ..  846548 +   -16  -5.49234   CAAACGCTAACTGAT  TGCAGAATAGGTCAGACA TGAA TGTCTGGTTTATTCTGCA   TTTTTTATTGAATGT 100 31
SH05_RS04125 NONE
        ilvH  849029 ..  849058 +  -2.1  -3.53091   CGCGCGGCGATAAAA       TAATGCGTTGAGA ATGA TCTCAATGCGCAA        TTTACAGCCCAACAT  47 15
SH05_RS04135  849169 ..  849191 +  -2.8  -4.87318   GTTAATGAATTTAAC          CCATA-CCA GTACAA TGGCTATGG           TTTTTACATTTTACG  67 57
SH05_RS04140  850429 ..  850444 +  -6.8  -2.72043   TTATTTTGTTACATG              CGGCGA TGAA TTGCCG               ATTTAACAAACACTT  56 231
SH05_RS04145 NONE
SH05_RS04150 NONE
SH05_RS04155 NONE
SH05_RS04160 NONE
        murE NONE
        murF NONE
        mraY NONE
        murD NONE
SH05_RS04185 NONE
        murG  861906 ..  861927 +  -3.8  -2.64651   GCCCGGGCGTAATTG           TAGCGATGC CTTTT GCATCG-TA           TGAATTTAAGAAGTT  44 29
SH05_RS04195 NONE
         ddl NONE
SH05_RS04205 NONE
        ftsA NONE
SH05_RS04215  867697 ..  867718 +  -6.7  -3.09208   TGCTAAACTGGCCCG           CCGAA-TGTA TAG TACACTTCGG           TTGGATAGGTAATTT  59 75
        lpxC  868692 ..  868735 +  -4.5  -6.17292   CTGTCGTATAAAATT CGACTGGCAAATCTGGC ACTCTCTCCG GCCAGGTGAACCAGTCG TTTTTTTTTGAATTT 100 52
SH05_RS04225  869438 ..  869454 +  -5.7   -2.8704   TACTTCATTTTATTA              ACTCCGC AAC GCGGGGC              GTTTGAGATTTTATT  53 55
        secA  872197 ..  872214 + -12.7  -5.33866   ACTGTTGAAGTAAAA             GGCGCAG GATT CTGCGCC              TTTTTTATAGGTTTA 100 47
SH05_RS04235  872741 ..  872770 + -12.1  -2.72144   AATTTGTTTTTGTAG       GTCGGATAAGGCG TTCA CGCCGCATCCGAC        ATTTGCACAAGATGC  83 142
SH05_RS04260  875687 ..  875712 + -16.2  -3.32963   CCTGTAATCTCCCAA         CGCTGGCGTG GAGCAA CACGCCAGCG          TTATCCCATCCCACT 100 34
SH05_RS04280  879208 ..  879230 +  -5.4  -4.57073   TCGACTTCTACTGGC           GCATCCGGGT GCA GCCAGGACGC           TTTTTCGACCGCCTG  72 247
SH05_RS04290 NONE
SH05_RS04295  881383 ..  881393 +  -2.4  -3.46586   ATTAATGCGCTTTTA                 CGGC TTT GGCG                 GTTTTCTCTTTAAAC  47 82
        pdhR  884052 ..  884077 +  -4.9  -3.24924   GAAAGAATTAGTGAT         TTTTCTGG-TAA AAA TTATCCAGAAGA         TGTTGTAAATCAAGC  53 30
        aceE NONE
        aceF  888787 ..  888804 + -14.1  -5.32882   GATGTAAGTAAAAGA             GCCGGCC CAAC GGCCGGC              TTTTTTCTGGTAATC 100 34
SH05_RS04320  890563 ..  890579 +  -6.5  -5.50499   CCGGCAATTAAAAAA              GCGGC TAACCAC GCCGC              TTTTTTTACGTCTGC  91 61
SH05_RS04330  895439 ..  895464 +  -6.9  -6.02919   GCATAAACGACACAA         TGCCCGGTTAAT GAG ATTC-CCGGGCA         TTTTTTTATTTCTAA 100 61
SH05_RS04335  896027 ..  896064 +  -3.5  -3.19293   CTCGCGCATTTCTTT  CC-ACAGCGCAGCGGTA ATTTCC TGGCGCT-CGCTGTCGG   TTAAGTCTTCCGGTT  47 111
SH05_RS04355  899817 ..  899832 +  -3.2  -3.03771   TGATGTTAGGGTTTA              CGGTAT AAAA AGACCG               TATTCGGAAATATGC  44 18
SH05_RS04365  903162 ..  903195 +  -3.1   -5.4182   CTGGACGAGTAAGTG     TGAAGTTGCCGGATGT GTT GCATCCGGCA-TGGCA     TTTTTATTTGTGGTT  82 29
SH05_RS04375 NONE
SH05_RS04380  905670 ..  905699 +  -9.3  -4.10657   CGTAGCTAAGGCTAT       TTCCTCTCCTCTG GATT TGGGGGAGAGGAG        TTTTGACGGCTATCA  85 32
SH05_RS04385  906225 ..  906246 +  -5.2  -3.92542   CCGCGATTCTGATGG           CGCTTTTG CTACAA TAAAAGCG            TTGTTTCACCCTCGG  63 42
SH05_RS04390  907918 ..  907932 + -11.4  -3.56099   CCTGTCGTTAACGAA               GCAGGC GAT GCCTGC               TTTGAGGAAATTCTC  89 442
SH05_RS04400  909103 ..  909127 +  -7.8   -3.1855   GGGGTAAATTAATAA          CTGGCGCCAT CAGCC GTAGCGCCAG          TTAAGTATTACGCCA  63 67
SH05_RS04480 NONE
SH05_RS04485 NONE
        mrcB  928580 ..  928599 +  -9.2  -3.68662   GCTCAGATTGCGTAC            CGCTTGCG AACC CGCCAGCG             TTTCGAATATTATCT  78 150
SH05_RS04495  929212 ..  929224 +  -4.1  -3.44051   ACCCAGCGCACTATG                CGGAT GCC ATTCG                TTATAATGCTCGAAC  52 86
SH05_RS04510  932266 ..  932285 +   -15  -2.74322   CTAATTTCTCTTTTG            GGGCACGG ATTT CCGTGCCC             ATTTCACAAGTTGGC 100 37
SH05_RS04515 NONE
SH05_RS04520 NONE
SH05_RS04525  936040 ..  936053 +  -8.1  -3.30124   ACGGATGCCCGATGC               GACGC TGGC GCGTC                TTATCGGGCCTACAA  66 94
SH05_RS04535 NONE
SH05_RS04540  939491 ..  939519 + -14.7  -3.68024   ATCTAATCTGTTGTT        CATGTGCCGGATA AAC TATCCGGCACATC        TTCTCTCTTCAACGC 100 35
         dgt NONE
SH05_RS04565  944846 ..  944869 + -14.6  -3.52093   AGTAATCTCCCTCAA          CCCCTTCCTG AAAA CGGGAAGGGG           TTCTCCTTACAATCT 100 36
SH05_RS04570  946494 ..  946508 +  -7.1  -4.40003   AAACTTAACGCTCTT               GGCGA AAAAC TCGCC               TTTGTCTTTCTGGAA  75 372
SH05_RS04600  953301 ..  953321 + -11.1  -4.89729   GTACACGTTTGGTTA            GGGGGCC TGCATAT GGCCCCC            TTTTTCACTTTTATA 100 200
         tsf  954246 ..  954267 + -13.7  -4.84761   CTTAATTATCAAAAA           GGAGCCGCC TGAG GGCGGCTTC            TTTTTGTGCCCATCT 100 36
SH05_RS04610  955362 ..  955380 +  -3.1  -4.11751   ACTGTGTGTGACTGT             CTGGTCT GACTG AGACAAG             TTTTCAAGGATTCGT  58 280
         frr  955969 ..  956017 + -11.8  -5.27206   TGATTTCTTGAACGA CAAAAACGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCGTTTTGC TTTTTATTCTGTCTC 100 38
SH05_RS04620  957349 ..  957366 +  -8.4  -6.02914   TATAAGGTCAGATAT             GCCGTG GTTTTA CACGGC              TTTTTTTTGTATAGG 100 130
SH05_RS04625 NONE
        cdsA NONE
SH05_RS04635  960413 ..  960428 +  -5.4  -3.33696   ACTTTTCAATGATTT              CTCTCG GTTA TGAGAG               TTAGTTAGGAAGAAC  55 13
SH05_RS04640 NONE
SH05_RS04645 NONE
        lpxD  964550 ..  964587 + -12.7  -4.07515   TTGTTCGCCAAACTT   TACGGCCTGTCTCATTC TTAC GATTGCGGCAGGCCGTG    TTATTATTGTCGTTT 100 52
SH05_RS04655  965066 ..  965087 +  -4.3  -2.79098   ACGATGATGTGTGCT           CGTAGCCGG GAGG CCTGATACG            TGATTGATAAATCCG  46 8
SH05_RS04660 NONE
        lpxB NONE
        rnhB  967602 ..  967613 +  -5.8  -3.01243   GTCAAACGCGCACTG                GGAC TTGC GTCC                 TGATTCTTGTGTCGA  54 11
        dnaE NONE
SH05_RS04680  972128 ..  972145 +  -9.1  -5.24129   AAAAGTTCTGAAAAA             GGGTCAC TTCG GTGGCCC              TTTTTTATCGCCACG 100 46
SH05_RS04685 NONE
SH05_RS04690  974813 ..  974833 + -13.3  -3.24925   TGTCATCGCCGCATT            TGCCCGGTA ACG TGCCGGGCA            TTGCTACTGTAAAAT 100 45
        tilS  976489 ..  976502 +  -8.1  -4.65895   ACCAGTAAGTTTGCC               GCAGC GTAT GCTGC                TTTTTCCCTGACAGC  84 358
SH05_RS04710 NONE
SH05_RS04715 NONE
SH05_RS04720  978638 ..  978651 +  -8.1   -3.4252   CTCAACGCCTGATGC               GACGC TGGC GCGTC                TTATCATGCCTACAA  68 157
SH05_RS04760  986071 ..  986085 +  -6.4  -3.12351   GGTTGAAGAGAAAAA               TCCTGA AAT TCAGGG               TTGACTCTGAAAGAG  57 161
SH05_RS04765  987860 ..  987873 +  -2.3  -2.72471   AAGAAGCGTACTTTG               CAGTG CTCA CACAG                ATTGTCTGATGAAAA  40 34
SH05_RS04770  987987 ..  987999 +  -6.3  -3.57309   CTCAGGCCTACCAAA                TTTGC ACG GCAAA                TTTGAAGAGGTTTTA  63 28
SH05_RS04775  988129 ..  988162 +  -6.7  -4.49756   GTTAAATAAAAAATA     CTTCAGAGTGTACCT GCAA AGGTTCACTGCGAAG      TTTTGCTCTTTAAAA  76 52
SH05_RS04780  991266 ..  991279 +  -2.4  -2.78679   AGAACGCAGAAGCGG               TCTG ATAAAA CAGA                ATTTGCCTGGCGGCC  41 85
SH05_RS04785  991419 ..  991434 +  -6.1  -2.82742   AAATTAAGCAGTAAG              CCGGT CATAAA ACCGG               TGGTTGTAAAAGAAT  55 44
SH05_RS04790  991544 ..  991563 +   -10  -5.92337   CCACTTATTAAGAAG            CCTCGAGT TAAC GCTCGAGG             TTTTTTTTCGTCTGT 100 38
        dkgB  992508 ..  992525 + -11.3  -4.68593   ATTAAGCCTCTCTGA             CAGCTCC TCCG GGAGCTG              TTTTTACATGCTCGC 100 36
SH05_RS04805 NONE
SH05_RS04810  995085 ..  995105 + -10.4  -5.25699   GGCATAAATAAAAAA            GGCACCGG GGGAA TCGGTGCC            TTTTTATTATCTGGT 100 34
SH05_RS04825  998089 ..  998101 +  -4.1  -3.14132   TTGGTAGCCTGTATC                TTCCA GTG TGGGA                TTCATCGCCGCGGCA  47 49
SH05_RS04835  999352 ..  999362 +  -2.4  -3.33744   AGGCGCTAAAAATAG                 CGAC TTG GGCG                 ATTTTTGCAGCAAAC  45 52
SH05_RS04840  999565 ..  999587 + -11.4  -5.88197   AATGAGTTCAGAGAG           CCGCAAGATT TTT AATTTTGCGG           TTTTTTTGTATTTGA 100 56
SH05_RS04845 1000941 .. 1000954 +  -5.3  -3.14229   GGAGCTATTAAAGGT               GCTAT TACG ATAGC                TATTAGTAAAAATAT  52 319
SH05_RS04860 1002340 .. 1002352 +  -4.7  -3.00918   CATTCCACAATCACT                CGCGC ATT GCCCG                CTTTATAATGTAGAT  48 460
SH05_RS04870 1003360 .. 1003377 + -12.7  -3.89354   TAGCGGATAAAGAAA             CGGAGCC TTTC GGCTCCG              TTATTCATTTACGCG 100 42
        gmhA 1006713 .. 1006726 +  -8.1   -3.4252   GCTGATGCCTGATGC               GACGC TGAC GCGTC                TTATCATGCCTACAA  68 90
SH05_RS04885 1007627 .. 1007642 +  -7.6  -3.21912   TGTAGTTTGATGCCA              GTTGTG GCTG CACAAC               TTCGTGGCTTAACGG  61 31
SH05_RS04905 1009999 .. 1010052 + -10.1  -2.56747   TGTAGGACGGATAAG GCGTTTACGCCGCATCCGGCAGTTG TACG CAGGTGCCTGATGCGACGCTGGCGC GTCTTATCATGCCTA  70 36
SH05_RS04910 1010683 .. 1010696 +  -8.1   -3.4252   GCAGATGCCTGATGC               GACGC TAGC GCGTC                TTATCATGCCTACAA  68 47
SH05_RS04920 1013332 .. 1013350 +  -5.2  -3.10343   TGGATAAGCAGCAGG             TGCTTTCG CAG CGAACGCG             TTAAATGCTGAATCT  53 3
SH05_RS04925 NONE
SH05_RS04930 NONE
SH05_RS04935 1015205 .. 1015215 +  -2.4  -2.87035   TGGGAAAATGGCAGA                 AGCG TTT CGCA                 TGCGTTTTTGAATTT  41 4
SH05_RS04940 1015711 .. 1015731 +  -3.1   -4.5442   TTGCAATGAAAATAA            CGCCCGCCT GGT ATGTGCGCG            TTTTCTGATTCCACA  63 48
SH05_RS04945 NONE
        prfH 1016905 .. 1016926 +  -2.2  -5.00616   TTGGCCCGATAGAAA           CCATGTCC ATTTCC GGATACGG            TTTTTTGAACAGACC  71 201
SH05_RS04960 1018969 .. 1018993 + -17.9  -4.47888   GGTCGCTAATCTTTT          CAACGCCTGGC ACT GCCGGGCGTTG          TTCTTTTTAACTTCA 100 32
        frsA NONE
SH05_RS04970 1020766 .. 1020788 + -13.5  -2.54276   GGCGTGAGTGAAATG           TGCCGGATG CATCA CATCCGGCA           ATATTCATTAAAACT  91 34
SH05_RS04980 NONE
SH05_RS04985 1024514 .. 1024568 +  -8.4  -3.69437   CGTGCGTAAATAAAA CCGGGTGATGCAAAAGTAGCCATTTG ATT CACAAGGCCATTGACGCATCGCCCGG TTAGTTTTAACCTTG  73 32
SH05_RS04990 1024846 .. 1024857 +  -2.2   -3.9941   CGCTCACTATACATC                CTTG GCTG CAGG                 TTTAGTTGTACACCA  53 174
SH05_RS05050 NONE
SH05_RS05055 NONE
SH05_RS05060 1034076 .. 1034096 +  -8.2  -2.62396   ACCTGAGCGGCAGTG            ACCTGCGG CATGC CCGCAGGG            TGATGTAACCCGCTG  63 95
SH05_RS05075 1035741 .. 1035751 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  65 24
SH05_RS05085 NONE
SH05_RS05090 1039465 .. 1039479 +  -4.2  -3.30124   CAGGCATTGCCGGAT               GGCG GCACAAG CGCC               TTATCCGGCCTACAA  51 92
SH05_RS05130 NONE
SH05_RS05135 1046933 .. 1046970 + -13.5  -4.45259   AATTATTTTAAGAGA   TAAAACCGTCTGCGGAA TATT TCCCGCAGACGGCTTTG    TTGTTTTTGAAATTT 100 39
SH05_RS05140 NONE
SH05_RS05145 1050516 .. 1050562 +  -9.3  -3.21993   GCGGTGGCGTGCACC GGCAGGC-GGCGGCCGATGCGT GAAT AGGCGATGGCGGCCAGCTTGCC TTCAATCTTCTCGAT  67 391
SH05_RS05165 1053963 .. 1053982 +  -5.8  -2.88579   TATTTAGTAGCGGAC            TTGCTGAT GACT ATCAGTAA             TCTATAGAAAATTGC  53 6
SH05_RS05200 NONE
SH05_RS05230 1065369 .. 1065399 + -12.8  -2.52795   TAATGCATTGAATGA       TAAAAATGGCGC AAATACA GCGCCATTTTTA       TAGGTTAAAAACATT  90 38
SH05_RS05270 NONE
SH05_RS05290 NONE
SH05_RS05295 NONE
SH05_RS05300 1078239 .. 1078249 +  -2.4  -2.62851   GGGTAGGATCATAAA                 GTCC TCG GGTC                 GTTGTCCACTCTTTT  38 60
SH05_RS05325 1083111 .. 1083124 +  -5.3   -3.1811   GTATAAGGGATGTAG               CCATT TTTA AATGG                ATTTCTTATGCCAAA  53 304
SH05_RS05330 NONE
SH05_RS05335 NONE
SH05_RS05340 1086318 .. 1086344 + -13.2  -3.59979   CTGCTCTTCTGTAAA         TATCCTGGTATT ACC AATGCCAGGATA         TTTACAGTGAAAAAG  93 139
SH05_RS05370 1093264 .. 1093289 +  -9.7  -3.99062   TGTTATTGCATAAAA         CCGCGCCATGT CTGC ATATGGCGCTG          TTTCTCCTACCTCTT  86 42
SH05_RS05380 1095298 .. 1095314 +  -3.7  -5.15634   ATCCCCGTTAATATG              CCATTTG GCG CAAATTG              TTTTTTAATCCACTG  79 113
SH05_RS05395 NONE
SH05_RS05400 NONE
SH05_RS05405 NONE
SH05_RS05410 1101517 .. 1101528 +  -7.2  -3.30124   GTTCATGCCGGATGC                GGCG TGAA CGCC                 TTATCCGGCCTACGA  64 48
SH05_RS05415 NONE
SH05_RS05420 NONE
SH05_RS05425 1104472 .. 1104491 +  -3.4  -3.29074   TATCACACTTACAGG            CGCTCGCC TTAT GGGGAACG             TTGCTGCTCTGTTTC  47 239
SH05_RS05430 1105867 .. 1105884 +  -2.7  -4.38927   GCGATTTCTGATAGT             GC-CTGGT TTA ATCAGAGC             TTTATTATCTGCGAC  59 208
SH05_RS05435 1106827 .. 1106838 +  -5.8   -3.2657   ATCTGTATATCTGTA                TGCC AACT GGCA                 TTCCATCTCTTTTTT  57 110
SH05_RS05440 1107806 .. 1107816 +  -2.4  -2.64099   ACCATAAGAGATAAG                 CGCC GCC GACG                 ATTCTGATAAGCGAA  38 431
SH05_RS05450 1108593 .. 1108612 +  -2.8  -4.07568   GGATAAAGCGTTCGC            GCTGCATT CGGC AGTTCAGC             TTTTCAGCCGCCGCC  54 108
        prpB 1111365 .. 1111378 +  -8.1  -3.30124   GCCGATGCCTGATGC               GTCGC TGAC GCGAC                TTATCAGGCCTACGA  66 67
SH05_RS05465 NONE
        prpD NONE
        prpE 1116356 .. 1116411 + -11.1   -4.4767   TAGGTTATTGTCGGA TGCGTCGCGCGGTGCATCCGGCACTG TGTGC CGATGCCTGATGCGACGC-TGACGCG TTTTATCATGCCTAC 100 38
        codB NONE
SH05_RS05485 1119244 .. 1119255 +  -7.2  -3.30243   GTTTATGCCGGATGC                GGCG TGAA CGCC                 TTATCCGGCCTACGT  64 64
SH05_RS05495 NONE
SH05_RS05500 NONE
        cynX 1122963 .. 1122987 + -12.9  -2.75822   TCGCTGAACTTGTAG          GCCTGATAAGC GCA GCGTATCAGGC          AATTTTTATAATTTA  91 91
        mhpA NONE
        mhpB NONE
SH05_RS05545 NONE
SH05_RS05550 NONE
SH05_RS05555 NONE
SH05_RS05560 1134304 .. 1134357 + -14.7  -2.57931   TAGGTCTGATAAGAC GCGTTAGCGTCGCATCAGGCA-TC TGCGCAC GACTGCCGGATGCGGCGTGAACGC CTTATCCGGCCTACG 100 141
SH05_RS05565 1136043 .. 1136065 +  -4.1  -3.53091   GCGTTTACAGGTATA           CTCGCTAAA AATTA TTCAGCGGG           TTTGGAAACAAAGAT  52 91
SH05_RS05570 1136716 .. 1136754 +  -9.5  -2.76583   CGGATAAGGCGTTCA  CGCCGCATCCGGCA-GTC GTGC GCCATGCCTGATGCGACG   CTTTGCGCGTCTTAT  70 123
SH05_RS05600 NONE
SH05_RS05605 NONE
        tauA NONE
        tauB NONE
SH05_RS05630 NONE
        tauD 1148003 .. 1148040 +  -6.3  -3.85698   AGAGGGTTAGGGTGA   GGGGGCGTTCACC-GT ACTTTCA ACAGGTTAACTCCCCC   TTTCTGAGAGGAAAC  65 75
SH05_RS05650 1151327 .. 1151356 +  -3.6  -3.01712   AGTACTGGCCTCCAC      GGTCCGTGTGAACG ATAA CGTTC-CG-GGGCC       TCTTACGCCGCCACA  46 268
SH05_RS05665 1153769 .. 1153792 + -15.4  -3.14132   ATTTAATCTAAATAA          TGCCCGTCAA GGAT TTGACGGGCA           TTACTGCAAAGGACG 100 69
SH05_RS05670 1154444 .. 1154471 + -11.4  -3.07816   AGTATTAATCAGGAC        GCGGGGAT-AACC AAC GGTTTATTCCCGC        TTAGCTCGGTCACCA  84 33
SH05_RS05680 NONE
SH05_RS05685 NONE
SH05_RS05690 1158603 .. 1158616 +  -2.3  -4.08767   GCATTGCGATATTTT               CCGCT AAAC AGCGA                TTTTGACAGGGTGAA  56 355
SH05_RS05700 1159278 .. 1159300 +  -6.3  -3.49886   GTGAAGCCAGGCAGG           GTGTTGATC TCGTT GATCACCAC           TTCGTTCTCTGGGGT  58 191
SH05_RS05710 1160489 .. 1160507 +  -5.4  -3.27298   GAATATATTTCATAA             CTTTTATT TAT AATAAAGG             TTGATAATTAAAAGC  55 3
SH05_RS05715 1160996 .. 1161010 +  -4.2  -5.21459   AAAGTTGTCACGGCC               GAGACT TAT AGTCGC               TTTGTTTTTATTTTT  78 68
SH05_RS05720 1162474 .. 1162505 + -14.4  -5.63374   GGCTGAAATAAAACC      GCGCCCGGCAGTGA ATTT TCGCTGCCGGGTGG       TTTTTTTGCTGTTAG 100 30
SH05_RS05725 1162922 .. 1162955 +  -7.4  -2.87963   GATACCTGATAGTGC     TAACGGGTGAGCTA CGAAAA TGGCTCACCCGAAA      TATCATACTTCTGCC  59 39
        adrA 1164326 .. 1164345 +    -2  -3.87815   ATTTTTGCGGAACCC            ATTACCGC CTGA GCGGCAAA             TTTATACGCCTGGGC  54 226
SH05_RS05740 1165595 .. 1165611 +  -5.9  -5.64421   GGGGTGTATTGAGAT              TTTCACT TTA AGTGGAA              TTTTTTCTTTACAAT  95 91
        aroL 1166226 .. 1166236 +    -4  -4.08394   CCCTGGCACAGACGA                 TCAA TTG TTGA                 TTTTCGAGCGCCTAT  61 15
SH05_RS05750 NONE
SH05_RS05755 NONE
SH05_RS05760 1167401 .. 1167412 +    -3  -4.18018   CGGCTGGCTGCGGAA                TTAC TGGT GTAA                 TTTTGCGTGACAGCC  58 14
SH05_RS05765 1167774 .. 1167798 +  -6.3   -4.8667   CTATCTGTAATTCCT          CGCCTTCCCCT TGA ACGGGAGGGCA          TTTTTCTGAAATATC  80 31
SH05_RS05770 1168318 .. 1168337 +  -2.8  -3.53164   CTGCGCTAAAAATTA            TTGCTCGC CGTA GCGAATAA             TTATATGCCTGGTGT  48 86
SH05_RS05780 1170828 .. 1170838 +  -8.2   -4.4648   CACCTAATAACTCTC                 CGCC TTT GGCG                 TTTTGTAGTAACAAT  85 494
SH05_RS05800 1177140 .. 1177167 +  -7.6  -3.68962   CAACCCGCTTTTAAC        GCCTTGCTCATC GGAC GCAGAGCAGGGC         TTATGATTTCTTAAC  70 27
        phoR 1178518 .. 1178539 +  -9.5  -4.88918   CATCTTTTATTGCCA           TAAGCCAGT CGAT GCTGGCTTA            TTTTCTTTGCAGTCA 100 52
SH05_RS05810 1180239 .. 1180262 + -15.3  -5.64304   GAACATTTGTTTTAA          CCACGGGGC TGCGAT GCCCCGTGG           TTTTTTATTGTGTTG 100 47
        proY 1181683 .. 1181711 + -14.6  -3.03338   CCTTGCGTTCTGTAA        GCCGGTTCAGGA GGAAA TCCTGATCCGGC        TATTCCGAAAGTTAT 100 42
SH05_RS05820 1183771 .. 1183785 +  -5.6  -3.58533   TCCAGACGTGGGCGG               CGGCTT GCC ATGCCG               TTTAACACGTTCTGG  58 157
        queA 1185375 .. 1185399 +  -9.9   -2.9162   AGGCAATTAATGAGC          GCGTCGGGGAG TAA TTCCGCGGCGC          TGGTTTAAAACGTTG  73 12
         tgt NONE
        yajC 1186907 .. 1186921 +  -2.7  -2.93361   CCGTCCTGCCGAAAG               GCACC ATGAA GGCGC               TGTAATTAAAATTTT  43 6
        secD NONE
SH05_RS05850 1189808 .. 1189827 +   -10  -5.92337   CGTTGATGTTGAAAA            TCCCGGTC AGAA GATCGGGA             TTTTTTTTGATGTAT 100 50
SH05_RS05855 NONE
SH05_RS05860 1190406 .. 1190426 + -12.6  -4.30576   GTTAACAATCAGAAA            TGCCGGGA ATAAA TCCCGGCA            TTTTCATAATCAGAA 100 36
SH05_RS05875 NONE
        ribD NONE
        ribH NONE
        nusB 1194870 .. 1194910 +  -7.7  -5.43553   AAAAAGTGATATCCA GGCCGGTAGATTCACGGAA GACCG TTCCATG-ATC-GCCGGCC TTTTCTTTTTTACCT 100 32
SH05_RS05895 NONE
SH05_RS05900 1196422 .. 1196464 +  -6.2  -2.73829   TGTCGTAGTTGTGCA CCGATGCCTGATGTGACG CTTGTCA CGTCTCATCAGGCCTGGA CTCTTATTTAAATCC  55 33
SH05_RS05925 1202318 .. 1202341 + -15.4  -3.55444   AATTTGTGGTTTTTA          CGTCGCATCT GGTC AGATGCGACG           TTTGCCGCATCCGAC 100 39
SH05_RS05940 1204589 .. 1204629 +  -9.7  -3.58726   ATAAGCGTAGCGCAG  CAGGCAATTCGCCGCGTTT TTT ATGCCTGACGAATTGCCTG  TTCTATCTCAAAGCG  80 133
SH05_RS05985 1214091 .. 1214102 +  -5.8  -2.75343   GGAGCAGGAAGCATC                GCGT AAAA ACGC                 ATTTGCAACTGTCGG  53 20
SH05_RS05990 1214281 .. 1214302 +  -3.6  -2.66232   TCGACTCATAAAAGT           GATGCCGC TATAAT GCCGCGTC            CTATTTGAATGCTTT  44 13
SH05_RS05995 1215773 .. 1215796 + -12.4   -5.9873   TAAATTCGCACAAAG          GCCCGTCACC GCCA GGTGGTGGGC           TTTTTTTTGTCATGA 100 60
SH05_RS06000 1216613 .. 1216630 +  -4.7  -2.96274   TCGTAATTGATGCCA             GAGGCGC AACT GTGCCGC              TATACTTATCCAGGG  50 31
        clpX 1218041 .. 1218059 +   -11   -4.3623   TTAGTTAACCAAAAA             GGGGGGAT TTT ATCTCCCC             TTTAATTTTTCCTCT 100 59
SH05_RS06010 1220582 .. 1220611 + -13.6  -5.72616   CACTAATAAAAACAG       GGCTGGCAGGCT AATTCG GGCTTGCCAGCC        TTTTTTTGTCTCGCT 100 58
SH05_RS06015 1221066 .. 1221085 +   -10   -5.7827   GTGACGAAGTTCAAG            GGCGCATC TACT GATGTGCC             TTTTTTATTTGTATT 100 61
SH05_RS06020 1223142 .. 1223157 +  -8.2  -4.39571   GCTGTAACAAGAAAA              GGTCGC TTTC GCGGCC               TTTTCCATTTCTGAA  82 74
SH05_RS06025 1223652 .. 1223674 + -10.7  -2.96274   TTTTGCCAGACTGAA           GAGGTCATA CCAGT TATGACCTC           TGTACTTATAACAAC  79 62
SH05_RS06030 1224483 .. 1224509 +  -7.3  -4.21194   GGAGAAATCCGTTTC        GCAGACGCCAGT AATT AC-GGCTTCTGC         TTTTACCTGATACGC  72 401
SH05_RS06045 1227555 .. 1227570 + -11.8  -5.86332   AGATCCCTTCCAGCA              CCGGGC AATT GCCCGG               TTTTTTTTGCGTTGA 100 43
SH05_RS06050 NONE
SH05_RS06055 NONE
SH05_RS06060 1231761 .. 1231784 +  -8.9  -4.67038   GGTGCAAAAATGTAA          CGCACTGTG CACTGT CATAGTGCG           TTTTCATTTTCAAAC 100 62
SH05_RS06065 NONE
SH05_RS06070 1233576 .. 1233602 +  -7.3  -5.68023   AAGCACTGCAAAAAA        CAGCCGGACGGT TTTC ACC-TCCGGCTA         TTTTTTTAATTGTGA 100 42
SH05_RS06080 1235265 .. 1235292 +   -15  -2.71364   CAATATTAAGCGACG        TTAACCCTCTCC GCCC GGAGAGGGTTAG         TAGTTCCAGCGATAA 100 32
SH05_RS06090 1236792 .. 1236810 +  -5.2  -5.02074   TAGTGATTGATCATG             TCACGCAG CAA TTGCGGGA             TTTTTTCCGAGGTGA  80 485
SH05_RS06130 1245729 .. 1245746 +  -9.9  -2.51951   AACCCTGAATCTGAC             TCCAGGA TTTT TCCTGGA              CATTTTCGTCGTTGC  70 39
SH05_RS06135 1249646 .. 1249660 +  -9.2  -3.18681   CAGCGCATGGCGGCA               GCGTGC CAG GCGCGC               TTCATAGGCTTCCAC  67 466
SH05_RS06155 1250601 .. 1250616 +  -6.1  -3.04398   CAATTATTGCGTACA              GCCAG TACATT CTGGC               GTTTTCGAGCACAGG  56 60
SH05_RS06160 1251322 .. 1251346 +  -9.9  -3.09492   CACAAGATGTGCATT          CAGCCTCGCCG TTC TGACGGGGCTG          TGTTAGCATTACCCC  74 77
SH05_RS06165 1253332 .. 1253348 + -10.9  -3.25015   TCCGCCCCATTTGAT              CGTAAGC ACA GCTTACG              TTCGTCATCCTTAAC  81 27
SH05_RS06170 1253692 .. 1253705 +  -2.3  -2.64099   ATGCAGCTGCCGCCT               GGCTT TAAG ATGCC                GTTCTGATGCAAACC  40 5
        recR 1254326 .. 1254343 + -11.3  -2.55818   TTTTTAAGCAAACGA             GAGCAGG ATCA CCTGCTC              TCGCTTGAAATTATT  79 34
SH05_RS06180 1256307 .. 1256334 + -15.7  -5.50723   GGTTTCCTGATGTAA        TGCCGGATGAC CTTCGT GTCATCCGGCA         TTTTTCTTTTCATCA 100 31
         adk 1257222 .. 1257241 +   -10  -4.07885   TTATCAGCAATCTCA            GGCCGGAT ATTC ATTCGGCC             TTTTACAAAAACCTC  88 121
SH05_RS06190 1258349 .. 1258373 +  -5.7   -4.3129   GTAAAGAACTGAGCG         CCGTCG-CGA AGAGCC TCGTCGGCGG          TTTTCATCATCCGTG  70 50
SH05_RS06200 1260755 .. 1260784 + -12.1  -2.82803   ATCGTCGGTTCGTAG       GCCAGATAAGGCG TTCA CGCCGCATCTGGC        ATTTGGCTCTCGATG  83 44
        ushA 1266048 .. 1266059 +  -2.2  -5.24129   GGGGGCGTCGATAAT                CGTT GGCA GACG                 TTTTTTCTGCCCCAG  79 200
SH05_RS06230 1268047 .. 1268060 +  -8.1  -3.30124   ACCATTGCCTGATGC               GACGC TTAC GCGTC                TTATCAGGCCTACAA  66 206
SH05_RS06240 NONE
SH05_RS06245 1273185 .. 1273195 +  -3.2   -3.4298   GTATAACATCTCTCT                 GTGC GCA GTAC                 TTCCTGTATTATTGT  49 35
SH05_RS06250 1273878 .. 1273897 +  -2.1  -3.67792   CAAAACGTCGGCCAA            TCAGCTGC TGCCC GC-GCTGG            TTTAAATGACTATCG  49 196
SH05_RS06265 NONE
SH05_RS06270 1276672 .. 1276705 + -16.8  -2.81547   GAAGAAGAAATGATG     CGATGCCGGATGCG CAGCAT CGCATCCGGCGTTG      TGGTTCATGTGCCGA 100 28
SH05_RS06290 NONE
SH05_RS06295 1282153 .. 1282176 +  -6.7  -4.02653   TGAGAGTAAATAAGG          GGCGTTCTG GTTGAA TGGAACGCC           TTGTTTAAATTAATT  69 41
SH05_RS06300 NONE
SH05_RS06305 NONE
SH05_RS06310 NONE
SH05_RS06315 1288374 .. 1288388 +  -3.6  -4.38154   TTTTGTTGGTGAAAT               TAATGT TAC GCATTA               TTTTATAACAAATAT  63 192
SH05_RS06335 1292220 .. 1292230 +  -3.2  -4.18197   GAAAGTATTCCTGAA                 CAGG AAC TCTG                 TTTTGCGTGACGCCT  58 5
SH05_RS06340 1293146 .. 1293163 + -12.7  -5.40474   TAATGTCTGTCGCAT             CCCGCTC TGCG GAGCGGG              TTTTTTTGACAAAAT 100 38
SH05_RS06345 NONE
SH05_RS06350 NONE
SH05_RS06355 1296855 .. 1296868 +  -2.5  -5.67711   AAGATGTTGCTTCAG               TATTA AAAA TAATA                TTTTTATTTTATTTG  84 109
SH05_RS06360 NONE
SH05_RS06365 1299830 .. 1299850 + -10.4  -3.36671   ATCTGGCCCCTGCAA            TGCCCGTC CTTGC GGCGGGCA            TTCTCCGGTTAAGGT  78 40
SH05_RS06370 NONE
SH05_RS06375 1302384 .. 1302415 + -11.6  -2.93723   TATCGCATAAGAGTG      CAGTACTCATGCCG GATG CGGCATGAGTACCA       TATCCTTCCTGAAAA  83 69
SH05_RS06395 1307631 .. 1307644 +  -3.1  -3.60098   AATAAAAAACTGGCT               CGTTT ATTA GAACG                TTTGCAATAAGGGGT  51 2
SH05_RS06400 NONE
SH05_RS06405 NONE
SH05_RS06410 1310670 .. 1310684 +  -7.1  -3.30124   ATTTGTGCCTGATGC               GACGC TTGAC GCGTC               TTATCAGGCCTACAA  64 56
        cysS 1315315 .. 1315338 + -16.8  -3.46602   GTAATTGCGCTATTG          CCGGATGCGA GTTT TCGCATCCGG           TTATCGTCTGCGCCA 100 37
SH05_RS06455 1318062 .. 1318081 +  -5.1  -2.75498   ATGAGATATGAATAA            TCAAAAC CACGTT GTTTTGA             ATTATATATCACGTC  50 26
SH05_RS06460 NONE
SH05_RS06465 1321626 .. 1321639 +  -3.9  -3.63515   AAATTATCAATAAGA               TAATC TGCA GATTA                TTATTGGCGATGGCA  53 44
        fimH NONE
SH05_RS06475 1323565 .. 1323579 +  -2.1  -4.08216   CTTTCACTGTGCTCT               GGATT TGTTT GATCC               TTTTCAGGAAGGTAA  56 438
SH05_RS06485 1324533 .. 1324554 +  -7.2  -4.13341   ACAGGCGGTATCGTT           CAGCGCCA CACCAA TGGCGCGG            TTTGATTTGCTCTCT  70 452
SH05_RS06500 NONE
SH05_RS06505 NONE
SH05_RS06510 NONE
SH05_RS06515 NONE
SH05_RS06520 1327590 .. 1327615 +  -4.7   -2.8547   CAAACTGTAGTACAA         TTCTCTCCAGT TTGA ACAGGAAAGAA          TATGCTATGAACCCT  49 61
SH05_RS06525 1327985 .. 1328010 + -10.5  -3.41907   AACGACTAAAATATG         GAGGCTCTTAT ATTT ATATGAGCCTC          GTTTTATGCTTTTTG  80 56
SH05_RS06530 NONE
SH05_RS06535 1329831 .. 1329844 +  -2.3  -4.39426   TAATTACTTTGTTTG               CTCCC ACAA GCGAG                TTTTGTACGGCTGTA  58 121
SH05_RS06540 NONE
SH05_RS06545 1331623 .. 1331651 + -11.8  -3.32844   ACACGGCATAATTAT        GTCACCGGAG CCTGAACAA CTCCGGTGAC        TTCTGCGCTAAACGG  89 90
SH05_RS06550 NONE
SH05_RS06555 1332376 .. 1332397 +  -2.9  -2.71712   AATGGTTGCGACTGG           CAGCAAGGA GGAG TCATGGCTG            ATTTGAGAAAAGCAG  41 3
SH05_RS06560 NONE
SH05_RS06565 NONE
SH05_RS06570 NONE
SH05_RS06575 1333785 .. 1333820 + -14.2  -4.77036   CTTGAGGGAGCCACT    TATATGTTG-GGGAGGC AAC GCCTCCCGCAACATATC    TTTTTCGTAATCAGA 100 164
SH05_RS06580 1334207 .. 1334220 +  -3.7  -3.93664   GGGTGCTCCACCCTG               GCCCG GATG CTGGC                TTTCATGTATTCGAT  58 226
SH05_RS06595 1336370 .. 1336382 +  -4.1  -4.31164   GAGGTTGCCCCGTAT                TCAGT GTC GCTGA                TTTGTATTGTCTGAA  63 400
SH05_RS06605 1336661 .. 1336719 + -16.3  -4.06182   AAAATACCCCCTGAA AAGAAAGGAAACGACAGGTGCTGAAAG CGAGC TTTTTGGCCTCTGTCGTTTCCTTTCTC TGTTTTTGTCCGTGG 100 83
SH05_RS06620 NONE
SH05_RS06625 1338798 .. 1338830 + -11.4  -3.16564   ATCATTGGGATTATG     CCGCAGCACG-TCTT AAGC AAGAACATGCTGCGG      TTGGATGCTATTTTT  84 40
SH05_RS06635 1339894 .. 1339910 +  -5.2  -2.99268   TTGTTTGATGTTATG              CTTTTG CGCCC CAAAAG              GTTGTTTAGATGTAT  52 98
SH05_RS06640 1341320 .. 1341350 + -11.8  -4.43309   TTGAAATGGCTAGTT       ATTCCCCGGGGCGA TTT TCACCTCGGGGAAA       TTTTAGTTGGCGTTC 100 229
SH05_RS06685 1353713 .. 1353746 +  -3.7  -3.10905   CGTCTGCGTTCGCTC     ACCCCAGTCACTTAC TTAT GTAAGCTCCTGGGGA      TTCACTCGCTTGTCG  48 79
SH05_RS06690 NONE
SH05_RS06695 NONE
SH05_RS06700 NONE
SH05_RS06705 1360066 .. 1360092 + -16.7  -5.65513   GTCAACCATCCGAAA         CCGCTCTCATC CATTC GATGAGAGCGG         TTTTTTTAATTACTG 100 70
SH05_RS06735 1364455 .. 1364496 +  -8.2  -3.65046   ATTTCTATCAACCCT GGGGCTGCCACTCCAAA CCCGAACAA TTTGGA-TGGTAGTCCC TTCTTCGCATGGAGG  73 250
SH05_RS06740 1364694 .. 1364715 +  -4.4  -3.52073   TGTGCGGGGAGTAAT           CCCATAAG CGCTAA CTTAAGGG            TTGTGGTATTACGCC  52 45
SH05_RS06745 1365887 .. 1365913 +    -8  -3.14683   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  63 49
SH05_RS06760 NONE
SH05_RS06765 NONE
        entF 1374743 .. 1374769 +  -8.2  -5.85425   AATATTATTTATAAA         CCCATAATTA CAGAAAA TAATTATGGG         TTTTTTATTTGTTTG 100 44
SH05_RS06775 1376066 .. 1376076 +    -4  -3.66356   TGATGGCAGACCACT                 TAGT TTA ACTA                 TTTGCGGTTGAAGGT  54 18
SH05_RS06795 1380554 .. 1380583 +  -8.7  -2.87132   CCAGCATCTGCCCTT       GTGCTGAT-TCTGG CGT CCAGAGATTGGCAC       TGTGTGCAGCGGCAG  61 343
SH05_RS06805 NONE
        entE NONE
SH05_RS06815 NONE
SH05_RS06820 NONE
SH05_RS06825 NONE
SH05_RS06830 1388804 .. 1388836 +  -9.8  -3.34715   TTGATAGCATTTGTA     G-GCCGGATAAGGCG TTCA CGCCGCATCCGGCAC      TCTTTCAGCAACATG  76 144
SH05_RS06835 1389340 .. 1389358 +  -6.6  -3.53012   TAGGCGACTTTGGTG             CCGTGGAG AAA CTTCTCGG             TTTGCGGCAGCACGG  61 300
SH05_RS06845 1391460 .. 1391494 +  -7.2  -3.90112   CCAGGCGCGGGAATA     TTGACGGTCGGCAA ACAACTC TTGCAGGCCGTTAA     TTTGCTTCAGGCGCA  68 53
SH05_RS06870 1396332 .. 1396351 + -13.6  -4.63218   AATTCACCTAATTCT            TCGGGTGC TGCG GCACCCGA             TTTTCTTCCCCGCAC 100 163
SH05_RS06875 1398035 .. 1398058 + -13.1  -5.27923   ACCTGCAATTGCTTA          GCCGCCGGG GTCAAA CCTGGCGGC           TTTTTTATGGCATTA 100 56
SH05_RS06885 1400217 .. 1400228 +  -5.8  -3.31263   CATCCTCTGGGCAAA                GCGA GTTA TCGC                 TTGTGCAGATGGGAT  57 230
        dpiB NONE
        dpiA 1411238 .. 1411260 + -13.4   -2.6955   GGGTGACATGATAAA           GCCGGAGGAA ACT TGCCTCCGGC           ATTACTATTTACTTG  93 35
        pagP 1413936 .. 1413952 +  -7.3  -4.02302   GGTGTACTGGTAACC              GACACAG CAT TTGTGTC              TATTTTTCATGTAAA  72 158
SH05_RS06960 1414211 .. 1414227 +  -9.4   -5.9663   AGCAAGAATTCAAAA              CCCGCT TAATC AGCGGG              TTTTTTTTGGTCTTT 100 49
SH05_RS06970 1415482 .. 1415495 +  -6.7  -3.91801   TAAACAACCGTCGCT               TTGCG CCGC CGCAA                TTATTATGATGTTTT  69 3
        tatE 1415883 .. 1415900 + -11.3  -5.24129   GTTCGATACAAAAAA             CCCGCTT CAAA AAGCGGG              TTTTTTATCAGACAG 100 72
SH05_RS06990 1418586 .. 1418607 +  -5.1    -3.494   CAACATAGACACCTG           GCGCGTC AGCCCGAG GATGCGC            TTCTATACCCAGTTC  56 340
SH05_RS07060 1432339 .. 1432357 +   -11  -3.30039   GATACAGGTCGAGAG             CCTGTCGG AGA TCGACAGG             TCTTCCTTCTCCGTA  76 178
SH05_RS07070 NONE
SH05_RS07075 1435740 .. 1435756 +  -4.4  -3.61178   GCTTTACGGGTGTCG              GGTTTG ACCCC CAGACC              TTTGAGGTAGATCCA  55 237
SH05_RS07085 NONE
SH05_RS07090 1438364 .. 1438407 + -18.8  -3.91144   ACGATGTGTTTTTTG CGCCGATGCCGGATGCAGCG TTTA CGCCGCATCCGGCAGCCGTG TTTATGGGATCTCAA 100 40
        ubiF 1453090 .. 1453105 + -10.4  -5.22312   GCAGAAAAGCAAAAA              GCTCGC CGAA GCGAGC               TTTTTTAATGTGGCT 100 153
SH05_RS07220 1462627 .. 1462649 +   -12  -6.15828   ATCCAACAATGACAA           GCGGTGGAGA TCT TCTCTGCCGC           TTTTTTTTTCATCAA 100 76
SH05_RS07225 1464644 .. 1464660 + -10.8   -5.4588   GCAAACAATCCAAAA              CGCCGC GTTCA GCGGCG              TTTTTTCTGCTTTTC 100 226
        chiP 1466431 .. 1466460 +  -7.8  -3.59627   CCATCTTCTGATGCC       CGACGCGGCAGGT TTTGT GCCTGCCGCA-CG       TTTGAGGAATTTGCT  70 30
SH05_RS07235 1466849 .. 1466866 + -11.3   -4.5442   CCCTTGCATAAAAAA             GCCAACC CGCA GGTTGGC              TTTTCTCGTTCAGGC 100 72
SH05_RS07250 1467854 .. 1467870 +  -6.5  -2.78495   TGGTGCCCAATGCGT              CGCAGAA ATA TTCGGCG              TAATCTTCCTGGTCA  51 248
SH05_RS07270 NONE
SH05_RS07275 1471903 .. 1471922 + -11.4   -5.1287   CATTTAATAAAAAAA            GGGCGGTC GCAA GATCGCCC             TTTTTTACGTATGAC 100 44
SH05_RS07280 1472641 .. 1472655 +  -2.8  -3.80862   ACATGTCTTATTGCG               TGAATG TTT CTTTCA               TTTGATACTGCATTT  52 74
SH05_RS07305 1477684 .. 1477703 +  -6.4  -3.95584   TGTTTAAGATAAAAA            GCCGTATT TATT ATTACGGC             TTTAATTAATAAAAG  67 183
SH05_RS07340 1486053 .. 1486074 + -17.3  -5.36441   TGAATACATTGAAAA           CCGCCAGCG GAAA CGCTGGCGG            TTTTTTGTATCAGGA 100 52
SH05_RS07345 1490446 .. 1490457 +  -4.4  -2.80622   TTATTAGATTTGTAT                TCAC CGGA GTGA                 TGTAATGAAATATAT  46 9
SH05_RS07350 NONE
SH05_RS07355 NONE
SH05_RS07360 1493074 .. 1493088 +  -2.1  -3.37796   TACTTATTGTCTAAA               GCTGT TTTTC ATAGC               TTATACATGATCAAA  45 194
SH05_RS07365 1493454 .. 1493468 +  -2.1  -3.37796   TCCTTATTACCTAAA               GCTGT TTTTC ATAGC               TTATACATGATCAAA  45 94
SH05_RS07370 NONE
SH05_RS07375 1495607 .. 1495622 +  -4.7  -3.17392   GCTTTCGTAAATTTG              TCCTG CTACAA CAGGA               TTAACTTCACAAATA  51 93
SH05_RS07380 NONE
SH05_RS07385 1497770 .. 1497785 +    -6  -4.02132   GGCCTATTAAGACTC              CAGCGC CAGC GCGCGG               TTTCTGAATTTCAGC  66 184
SH05_RS07395 1500279 .. 1500291 +  -2.6  -2.94076   TCAGAGGGATCGAAA                GTGC AACGA GCGC                GTTGTTATCTGATAG  43 48
SH05_RS07400 NONE
SH05_RS07405 NONE
SH05_RS07410 NONE
SH05_RS07415 NONE
SH05_RS07450 1511464 .. 1511474 +  -5.4  -4.32436   CTTCATAACTTTTAC                 GCAT TAT ATGC                 TTTTCCTGGTAATGT  68 162
        sdhC 1512231 .. 1512244 +  -3.1  -2.78384   CGTGCTTTCACTTCT               CGCAGG AGT CCT-CG               TATGGTAAGCAACGC  43 4
        sdhD NONE
        sdhA NONE
        sdhB 1515111 .. 1515157 + -10.7  -2.57931   TAGGCCTGATAAGAC GCGCAAGCGTCGCATCAGGCA ACCAG TGCCGGATGCGGCGTGAACGC CTTATCCGGCCTACA  76 45
SH05_RS07475 NONE
SH05_RS07480 NONE
SH05_RS07485 1519498 .. 1519511 +  -8.1  -3.30124   ATTGAAGCCTGATGC               GACGC TGAC GCGTC                TTATCAGGCCTACGG  66 98
        sucC NONE
SH05_RS07495 1521811 .. 1521828 + -11.3  -5.39755   GGTTTCGACATGGTT             GGCCATC GTAT GATGGCC              TTTTTTGTGCTTATC 100 101
SH05_RS07505 NONE
SH05_RS07510 NONE
SH05_RS07515 1527536 .. 1527552 +  -5.3  -2.55213   TAACCCTGGGTGAGT              TAATTAT AAT ATAATTA              TAAGTTAACTAAATG  49 12
SH05_RS07520 NONE
SH05_RS07525 NONE
SH05_RS07530 NONE
SH05_RS07535 1531309 .. 1531334 +  -7.6  -4.63184   AATTCTCTTTAAAAA         ATTATGGGCC GCTCCA GGCCCATAAA          TTTTTACGCTCCCTT  86 46
SH05_RS07540 NONE
SH05_RS07545 NONE
SH05_RS07550 NONE
        tolA 1534331 .. 1534344 +  -2.3  -2.70544   GGTCAACATCAGGCA               CCGGT TGCC ACGGG                GTTCTGGTAGTTTTG  40 63
        tolB NONE
SH05_RS07565 1536280 .. 1536291 +  -2.2  -2.52896   GGTTTACTAAGAGAA                TTGC ATGA GCAG                 TAACTTCAGACATCA  39 31
SH05_RS07570 1537087 .. 1537114 + -10.7  -2.79302   GTAATGCATAACACA        CGACCAGAAGT CGCATT ATTTCTGGTCG         TGTCGTGCGAATCAT  77 37
SH05_RS07575 1537416 .. 1537428 +  -6.3  -3.46602   CTGCACGACCCACCA                CTAAC ATA GTTAG                TTGTAGTATCCAGCG  61 126
SH05_RS07580 1537521 .. 1537534 +  -2.3  -3.10409   CGATCCCGTCATCAC               CCACC ACCG GGTCG                TTAGCTCAGTTGGTA  43 20
SH05_RS07585 1537696 .. 1537716 +  -5.4  -3.06302   AGTCATCCTGCACGA            CCCACC ACTAATGAC GGTGGG            TTCGGTGGAAGTAGT  52 117
SH05_RS07590 NONE
SH05_RS07595 1538041 .. 1538065 +  -3.6  -2.56596   AGTAAAAATCTTTCA         GGTAAC-ACCC GTAT GGGTCGTTAGC          TCAGTTGGTAGAGCA  44 158
SH05_RS07600 1538125 .. 1538142 +  -4.1  -3.21099   CGAATCCTGCACGAC             CCACC AATTTAAA GGTGG              TTACTGGTAGAGAAC  49 20
SH05_RS07605 1538341 .. 1538371 + -14.9  -2.90212   GCACGACCCACCAAT       GTAAAAAAGCGCC CTAAA GGCGCTTTTTTGC       TATCTGCGATACTCA 100 28
SH05_RS07610 1539826 .. 1539839 +  -6.7  -3.53224   ATAACGAATAATAAG               GCGTA ACGT TACGC                TTTGGGGGAAAGATG  63 37
SH05_RS07615 1540663 .. 1540688 +  -2.5  -3.13299   GAATGGTGGCGTGCT         CAATCTGATAG TGAT CCATCAGGTAG          TGTTGGATCTGATCC  43 117
SH05_RS07635 1543484 .. 1543504 +  -8.3    -4.208   GTTAGCAACAAAAAA            GCCGACT CACTTGC AGTCGGC            TTTCTCATTTTAAAC  79 138
SH05_RS07675 1551618 .. 1551635 +  -8.4  -5.35224   CATTGATTCCCTGAA             TGCCCG CTTAGT CGGGCA              TTTTCTTTTTCTCAA 100 35
        modA NONE
        modB NONE
        modC 1554655 .. 1554675 +  -4.6  -3.53012   GGGCGAACTTCCATA            CGGCGTTA ACTTG TTGCGCCG            TTTCAGCCAGAGAAG  53 382
SH05_RS07700 1556280 .. 1556303 + -15.3  -3.10053   TAACCGCTGATTTAC          CCGGCGCAG TCTCTC CTGCGCCGG           TGTATTAACCTATCT 100 38
SH05_RS07710 NONE
SH05_RS07715 1560150 .. 1560173 + -13.2  -2.89055   TCCATTTATTATCTT          TCTGCGCACT TCAC GGTGCGCAGA           TATCTGGAGCATTTG  91 169
SH05_RS07720 1562472 .. 1562500 + -11.8  -2.73468   CCATGTGAATGTAGG        TCGCATTCGGCA CTTAT TGTCGGATGCGA        TGCTTGCGCATCTTA  83 47
SH05_RS07740 NONE
SH05_RS07745 NONE
SH05_RS07750 NONE
        bioD 1570025 .. 1570040 +  -3.2  -4.52589   TTGCTTTGGGGATAA              C-CCGGT AAG GCCGGAG              TTTTATCTCGCCACA  63 417
SH05_RS07760 1572324 .. 1572381 + -15.5  -3.12482   GCAATATATTGAATT TGCGCGGTTTGTAGGCCGGATAAGGCG TTCA CGCCGCATCCGGCATAAACAACGCGCA CTTTGTCTTCAATAG 100 116
        moaA NONE
SH05_RS07780 NONE
        moaC NONE
        moaD NONE
        moaE 1576442 .. 1576472 +  -3.8  -3.55761   CTGGTAGTTTTTTGT       TAGCCGGATAAGGC ACC GCTGCGTCCGGCAA       TTTCACCGCTCAGTA  51 34
SH05_RS07800 1577294 .. 1577312 +  -8.1  -5.84381   TTTTCACCATCACTA             TCCCGGC CATGT GTCGGGA             TTTTTTTCTTACTAA 100 45
SH05_RS07805 1578587 .. 1578597 +  -2.4  -4.25074   CGAATTTCCATGAAG                 GCAG CAC CAGC                 TTTTGCCCTTTGATG  58 420
SH05_RS07825 1582118 .. 1582128 +  -8.2  -3.57263   GTGGCGACAATTAAC                 GCCG GTA CGGC                 TTTGCCGATGAAGAT  69 417
SH05_RS07855 1589043 .. 1589072 + -13.5  -2.71712   TGCATGCTTTTGTAG       GCCGGATAAGGCG TTTA CGCCGCATCCGGC        ATTTCACAACAAGCA  93 146
        dinG 1591889 .. 1591902 +  -9.5  -3.25223   AAAACGAAATCCCCA               CGCCG TCGG CGGCG                TTAATGATGTGAGTC  74 8
SH05_RS07870 1592908 .. 1592931 + -12.5  -4.07568   TTAATTCTTTTCTCA          GCCGGATGA GCCATG TCATCCGGC           TTTTACCCCACCGCA 100 37
SH05_RS07875 1594287 .. 1594333 + -15.1  -2.62463   TAGGCCTGATAAGAC GCGGTAGCGTCGCATCAGGCA TCTGT TGCCGGATGCGGCGTAAACGC CTTATCCGTCCTACG 100 190
SH05_RS07905 1600188 .. 1600199 +  -4.4  -4.32201   CCAATAATCAGCCCG                CGAA TTTC TTCG                 TTTTCCATTAATTCC  67 269
        ompX 1607667 .. 1607696 + -10.1  -4.70879   TCACTTTGGTGATAT       AAAAAATCCGCCT CTCG GGGCGGATTTTTG        TTTTTAAGGTTTCGG 100 41
SH05_RS07960 NONE
SH05_RS07965 1611470 .. 1611488 +   -11  -4.59424   CTGGCAAATAAAAAA             GGCGGATT ATG AGTCCGCC             TTTTGCTTTAAGTTT 100 44
SH05_RS07975 1614585 .. 1614595 +  -8.2  -4.62069   CGCGGGAAGTCGCCC                 GGCG ATG CGCC                 TTTTTCCAGTGCGGC  88 369
SH05_RS08000 1621023 .. 1621043 + -11.1  -3.30124   TCATAAATTGCTGAT            GACGTGGCG GAG TGCCGCGTC            TTATCAGGCCTGGAG  81 58
SH05_RS08015 NONE
SH05_RS08020 NONE
SH05_RS08025 NONE
SH05_RS08030 NONE
SH05_RS08035 1629535 .. 1629547 +  -3.4  -2.58398   CCTCACAGGAAATTA                TTGC CCTAA GCAA                GTGTTGTAACTTTCT  42 73
SH05_RS08040 NONE
SH05_RS08045 1633361 .. 1633386 + -13.3  -2.60244   TAATCATTATTCGCA         GGCCGGACAAA TGAT TTTGCCCGGCC          TGAATTAATTAAACC  93 38
        bssR 1635324 .. 1635344 + -12.6  -3.48703   AGGCCTGAAAACTAA            GGGGGAGA AAGCG TCTCCCCC            TTCATGTTTAAGTTT 100 33
SH05_RS08060 1636897 .. 1636918 +  -2.9   -3.3581   GCTTCCGCACGACGT           GCCGGTG AGTCGATC CACAGGC            GTTTTTGCCCGTACT  47 380
SH05_RS08070 1638626 .. 1638650 + -13.6  -3.39862   TTAATCTTCTGATAA          CCGGATGGCG CGAAA CGTCATCCGG          TTATACGTCATTAAT 100 37
SH05_RS08085 1641596 .. 1641622 +  -8.7  -3.37464   CGAAGGGTAAAAAAA         TGCCTGACTGC TTTGT GCGATCAGGCA         TTCTCGAATTAATGG  71 31
SH05_RS08105 1644762 .. 1644780 +  -7.4  -3.29043   ATTAAGACTGATGCC             CTGCGGAA AAG TTCTGCGG             TTGTGCAAAAAAATT  64 143
SH05_RS08115 1647153 .. 1647169 +  -9.4  -3.29511   GAAAAAATCAGTAAA              GCCCTC AACGC GAGGGC              TTGTCAGACGATCAG  74 27
SH05_RS08125 NONE
SH05_RS08130 NONE
SH05_RS08135 1649536 .. 1649547 +  -3.6  -2.78216   TACGACAGAATATTG                CCTG AAAA CGGG                 TGGTTAGTCGCAATC  45 7
SH05_RS08140 1650126 .. 1650169 + -11.8  -3.65046   TCCACTGATAACTCC TTTCG-AGCACGCAGTCGCTG GTG CAGTGGCTGCGCGCTGCAAAA TTATCTGCTGTTTTT  93 33
SH05_RS08145 NONE
SH05_RS08150 1651639 .. 1651655 +    -3  -3.05384   CAATTCGCACCATTA             TG-GTGC GCTT GCACACA              TTCAATGCCGGAGAG  44 83
        potG NONE
SH05_RS08160 NONE
SH05_RS08165 1654644 .. 1654668 + -12.2  -4.25104   GCCAACCTGGCTACA          TAATGCCGCG CATGT CGCGGCATTG          TTTTCATGGAAGACG 100 55
SH05_RS08170 NONE
        rumB 1656505 .. 1656518 +  -9.5  -3.98172   TGTCATCAGTCTCAA               GCCGC GGTT GCGGC                TTTCTGAATCTTACT  83 200
SH05_RS08210 NONE
SH05_RS08215 1662561 .. 1662589 +    -8  -4.30978   TCAAAATTCAACTTG        GAGACGCCGTAG TGGGT CAGCGGCGGCTC        TTTTGCTGACTTGCG  78 158
SH05_RS08265 1674838 .. 1674887 +  -6.6  -5.14965   AACATCGTGGCCATT TGTGGCTGAATAGCGTCGAGCATCT CAT AGC-GC-CGACGGTATTCAGCC-CG TTTTTTACTGGCGAT  88 47
SH05_RS08275 NONE
SH05_RS08280 1678994 .. 1679014 + -12.6  -4.35926   TTTTTGAGATAAAAA            TGCCAGCC GATCG GGCTGGCA            TTTTGCCTTTAGGAT 100 41
        clpS NONE
        clpA 1682251 .. 1682278 +   -15  -5.38054   AGGTAGGTTGGTCAA        GTCCGTAATCTC GAAA GAGGTTACGGAC         TTTTTGTTTATGGGG 100 51
SH05_RS08330 1689831 .. 1689860 + -13.7  -2.75577   TGTTAATCCATACAG       CAACAGTACTGGG GTAA CCTGGTACTGTTG        TCCGTTTTAGCATCG  93 82
SH05_RS08335 1693911 .. 1693946 +  -9.6  -2.89564   TAACTAATGCATCGT    ATGCCGGATAAGGCGC GGTA GCGTCGCATCCGGCAC     TCTATCAACTGAAAA  70 38
        lolA 1694676 .. 1694697 +  -2.3  -3.37634   GTAAGTAGAGGCACC           TGAGTGAGCA ATC TG-TCGCTCG           ATTTTTCGGATAATA  45 33
SH05_RS08345 1696025 .. 1696039 +    -5  -3.48053   ACGCTACCGTTAATG               TTATCG TTG CGGTAA               TGTTGTTACTGTATC  55 28
SH05_RS08350 1697431 .. 1697444 +  -9.5  -5.72616   TTCTGAATCTAAAAA               GCGCC TGCG GGCGC                TTTTTTTGTCTCCCT 100 51
SH05_RS08355 NONE
SH05_RS08360 NONE
SH05_RS08365 1701591 .. 1701608 + -10.5  -4.14927   AGCTAATCATAACAA             CCGGGGT TTCG GCCCCGG              TTCTCTTTTATTTCT  91 35
SH05_RS08375 1703715 .. 1703746 + -13.2  -5.82036   TGTAAATGAATTCAA      GCAGAGTGTGAA CTTACTGT TTCACACTCTGC       TTTTTTGTTTCTTCT 100 36
SH05_RS08380 1705503 .. 1705527 +    -8  -3.14344   CACATTCTAAACGAC         CAGTATCAAGG TACT CCTTGAT-CTG          TTCATAGAGCAGATA  61 184
SH05_RS08390 1706989 .. 1707012 + -12.5  -3.53761   GCGCGGAATAAAAAA          GCGGCAACT CAATAA AGTTGCCGC           TTTACGGGGAAATTA 100 71
SH05_RS08415 1714281 .. 1714308 +  -4.8  -3.14132   AGGAATAATGTATTA        CCTGTGGTCG CAATCGAT TGACCGCGGG         TTAATAGCAACGCAA  51 167
SH05_RS08420 1715446 .. 1715466 + -12.6   -5.4659   GAAATTTTGCTTAAT            CCCCACAG CCAGC CTGTGGGG            TTTTTATTTCTGTTG 100 45
SH05_RS08425 1716824 .. 1716842 +  -8.8  -5.75945   CTTTCTTTATCAAAA             CGTCGGCA CAT TGTCGGCG             TTTTTTTTCGGACCT 100 69
SH05_RS08430 1717829 .. 1717849 +  -8.9  -3.66784   AACGATTTGTGGCGT            CGGCGCGTA TAA TGCGCGCGG            TTATGTTAACGGTAC  75 141
         cmk 1718590 .. 1718614 +  -4.9  -3.06696   CGAATTTGCAGTACC          CCCGTTGCAAT GGA ATGACAGCGGG          TATGTTAAACAACCC  50 46
        rpsA 1720439 .. 1720456 + -14.1  -3.18264   GTAATCAAGCACTAA             GGGCGGC TACG GCCGCCC              TTAATCAATGCAGCA 100 111
        ihfB 1720821 .. 1720849 + -13.3   -3.0636   CTCAAACTTGAACGA        GAGAAAAGCACCT GTC GGGTGCTTTTTTC        ATTTCTCTAATCTGG 100 49
SH05_RS08450 NONE
SH05_RS08455 NONE
        lpxK 1726041 .. 1726053 +  -4.7  -3.20901   TCTGGCAACTAGTTA                CGCCG CGG CAGCG                TTCGATTGATGGAGT  51 29
SH05_RS08465 NONE
SH05_RS08470 NONE
SH05_RS08475 1728323 .. 1728336 +  -5.3  -4.35675   ATTTTGGGAGGAGTG               TCGTA CCGT TACGA                TTTTCCTCAATTTTT  68 65
SH05_RS08480 1729320 .. 1729336 +  -3.6  -4.09685   AATCACTCTTGCCGT              GGCTCG CCTGA CGAACC              TTTTAGCCACTGCCA  60 15
SH05_RS08490 NONE
SH05_RS08495 NONE
SH05_RS08500 NONE
        mukB 1737478 .. 1737495 + -12.7  -5.26119   GCGAGTTAAAATTAA             GGCGGCA GCAA TGCCGCC              TTTTCTTTTTCCGAA 100 32
SH05_RS08510 1739645 .. 1739661 +  -5.7  -3.13432   GCGATTCTCTGCAGC              CCCCGTC ACT GCTGGGG              TTGAGTCATCTTGAC  55 91
SH05_RS08515 NONE
SH05_RS08520 1741169 .. 1741186 + -12.7  -3.75772   TTGTCATCAGTCTCA             GCCCGCT TTTC AGCGGGC              TTCATTGTTTTTAAT 100 212
SH05_RS08530 1742640 .. 1742654 +  -2.1  -3.25719   ACGCCCAGTTTGTTG               TCAGA ATCGA TCTGG               TTGATGATGTAGTCA  43 102
        pepN 1749924 .. 1749959 + -13.3  -2.77431   CACTGGCTTGATAAA    TAACCGAATGGCGGC AATAGC GCCGCCATTCGGGGA     ATTTACCCCTGTTTT  93 30
SH05_RS08580 1755124 .. 1755145 + -15.9  -2.62118   TTTTATTAATTAGTA           CCCCTCCAG TGTT CTGGAGGGG            ATATTCATATTTTTT 100 57
SH05_RS08585 NONE
SH05_RS08590 NONE
SH05_RS08595 NONE
SH05_RS08600 NONE
SH05_RS08605 NONE
SH05_RS08610 1761351 .. 1761365 +  -2.8  -5.75342   GCCCTGAAACAGGTT               CGGAAA ACG TTTGCG               TTTTTTTTGCCGCAG  86 34
SH05_RS08615 1762485 .. 1762528 + -10.6  -3.22448   CTTCGAATTCCTCTT TATAAGATAATCAGGGCT TTATTTTC AGCCCTGGTTGTTTTATA TTCATCGCTGTTGCT  77 47
SH05_RS08620 1763358 .. 1763374 +  -4.4  -3.90922   GATTTTCTAATTGCT              CCAGCA ACACC TGTTGG              TTATTTCCACGAAAT  60 204
        rlmL NONE
SH05_RS08635 1768636 .. 1768650 +  -2.8  -2.69799   TATCAGGCATGAAAA               CCAACA CTT TGTTAG               TCATCTGTAAAATAG  41 105
SH05_RS08640 NONE
SH05_RS08645 NONE
SH05_RS08650 1772167 .. 1772193 + -10.8  -5.76633   GATTTGTAAATATAA         CCGTCTCCGGTA TGT TGCCTGAGGCGG         TTTTTTTGTCTCTAA 100 48
SH05_RS08655 1772584 .. 1772610 + -15.2  -2.51207   TCTGTCTCTTTAAAA         AGAAACCTCCGC ATT GCGGAGGTTTCG         CCTTTTGATACTCTG 100 42
SH05_RS08670 1775662 .. 1775677 + -11.8  -4.82901   TAAAGGCAAAAAAAA              CCCCGC AGCA GCGGGG               TTTTTCTACCAGACG 100 65
SH05_RS08680 1777395 .. 1777424 +  -3.5  -3.14881   CCGACTCAGTTTTTG       TTGCGGTGTTAAC CAGA GTTGCCAGCGCGA        TTGCTGACCGAGTTG  47 309
SH05_RS08690 1778431 .. 1778444 +  -3.1  -3.11634   TACGCCGAAACAGGA               GTTTC CTGC GGAAC                TTGAGTAATCTGGCG  46 4
        helD 1783332 .. 1783360 +    -6  -3.09327   CTGGATTATGAAGTC       TGCCG-TTGCCAC GTTG GTGGCGACCGGAA        TGTTCCATACCGTCG  53 147
SH05_RS08725 1785049 .. 1785076 + -17.1   -4.1673   TGGCCAAATAAAAAA        TCCCCGGAAGG CAAAAA CCTTCCGGGGA         TTTGTTCAGGGATTA 100 30
SH05_RS08740 1787088 .. 1787119 +    -8  -5.06414   TTAGCCGGACCTTTC      GGAAACAGTCGGTA TAAA TAGCGGCTGTTACC       TTTTTCTTCGCCAAA  91 86
SH05_RS08760 NONE
SH05_RS08765 NONE
SH05_RS08770 NONE
SH05_RS08775 NONE
SH05_RS08780 NONE
SH05_RS08785 1794344 .. 1794357 +  -3.1  -3.57144   GCAATCGGCGAATAC               CTCTG GTCG TAGAG                TTTCAGGATAAAGAG  49 78
SH05_RS08790 NONE
SH05_RS08795 NONE
SH05_RS08800 NONE
SH05_RS08805 1798670 .. 1798706 +  -2.8  -3.95448   AGAACTGTCTAATGC   GTAGACCGGAAAAGGCG TTCA CGCCGCATCCGGCC-AC    TTTCAGTTTTACTCT  54 95
SH05_RS08850 1807675 .. 1807690 +    -4  -3.53091   AACATTTGCCGCTGT              TGGTCCT CGC AGG-CCA              TTTACGCGGCAAAAT  51 485
SH05_RS08860 1808530 .. 1808543 +  -3.1   -2.7263   GCAAATACGCACTGA               CCATGC GCC GC-TGG               ATTTCACAAAATAAT  42 197
SH05_RS08865 NONE
SH05_RS08870 1808930 .. 1808962 +  -7.8  -3.79909   AAATAATGTGATTTT     GT-GAACATCACCCC GTGC GAGGTGATGTTCCGC      TTGTTGCTAATTTAG  72 30
SH05_RS08885 1814320 .. 1814332 +  -4.7   -2.8478   CGTACTACCAGTTCG                CGCAG TTC CAGCG                GTTTGGTGACGTAAT  47 371
SH05_RS08895 NONE
SH05_RS08900 NONE
        torD 1819256 .. 1819286 +   -14  -2.73364   ATGAGCTACAAACCG       GGAAAGCCGCTGGC GCA GCAGGCGGTTTTCC       TGCTTCAGGTGCGCA  95 198
SH05_RS08920 1822121 .. 1822149 + -10.3  -4.61633   GAGGCAGGGGCTAAT        CAGGCATAGTTTG CGT CAAACCTTGCCTG        TTTTTGAAGATGTAT 100 169
SH05_RS08925 1823515 .. 1823545 +  -6.7   -2.7563   GCGGTGAAATAACAG       AAAACTCCCCCGC GAGAA GCGGGGGAGTCGC       TGGTTAAACGTTTTT  57 29
SH05_RS08940 NONE
SH05_RS08945 1825169 .. 1825187 + -13.1  -4.84918   TGTCAACAATCTGCA             CCGCCGG TAACC CCGGCGG             TTTTCTGTTTATGGC 100 255
SH05_RS08985 1831567 .. 1831600 + -10.9  -2.63585   TTCGACCACGTTAAA     GATGCCGGAGGAGGT TGTA ACATCCTCCGGCTAC      CTGTTTAACCTATAG  76 27
SH05_RS08995 1835942 .. 1835968 +  -4.5  -2.62111   TTCCGGTGGCAGATA        TAACGGCAA-GT TTCG ACATTGCCGATA         ATAATTTTTTGGAGA  48 136
SH05_RS09000 1837596 .. 1837621 + -14.7  -2.62515   TGCAGGGAGCGCGCA         GGGGGCGGC CAATCGCC GCCGCCCCC          TGCTGTCCCGGCCTT 100 123
SH05_RS09010 1838881 .. 1838892 +  -4.4  -3.34344   CGTAACAAATACGAC                GCAA ACTC TTGC                 TTAGTTACAACATAC  51 36
SH05_RS09015 NONE
SH05_RS09020 1841376 .. 1841389 +  -8.1   -3.4252   GCAGATGCCTGATGC               GACGC TTGC GCGTC                TTATCATGCCTACAA  68 69
SH05_RS09030 1842756 .. 1842780 + -13.6  -4.33907   AGTGTGTTATCGGTG          CAGAGCCCGG GCGAA CCGGGCTTTG          TTTTGGGTGTTTATG 100 40
SH05_RS09055 1850965 .. 1850975 +  -3.2  -4.24123   GGACACAGGCCTAAG                 CGAG GTT CTTG                 TTTTCAAATTGTTCC  58 71
SH05_RS09070 NONE
SH05_RS09075 1853674 .. 1853693 +  -7.8  -3.58256   ATATACGAAAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTTCTTTAAATATG  70 185
SH05_RS09080 1854036 .. 1854055 +  -7.8  -3.58256   ATATACGAAAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTTCTTTAAATATG  70 177
        ghrA 1855704 .. 1855725 +  -7.3  -3.05384   AATAAAGCATCAGGA           TTCCTGCTA TCCT TGGCGGGAA            TTGAATACAGGAGAG  61 39
SH05_RS09095 NONE
SH05_RS09100 1857086 .. 1857102 +  -3.7  -3.07622   CGTCACTCATAACTG              CAACGGA TAA TTTGTTG              TTGCATAAAATGTGT  48 51
SH05_RS09105 1857687 .. 1857705 +  -7.4   -5.4251   CTTAAACAGTAAAAT             GCCGGA TGATAAT TCCGGC             TTTTTTATCTGTCAG  95 59
        csgB NONE
        csgA 1861791 .. 1861806 + -10.4  -5.75342   TTTGTATTACAGAAA              CAGGGC GCAA GCCCTG               TTTTTTTTCGGGAGA 100 48
        csgC NONE
SH05_RS09150 1862681 .. 1862695 +  -5.7  -2.56181   AGAAGGTGTAAGGAG               GCGTT ATGAA AACGC               GTATTCATGTTGTGC  52 115
SH05_RS09155 NONE
SH05_RS09160 1864623 .. 1864633 +  -3.2  -3.83568   TGGCGTCGATATTGC                 CCGT GGA ATGG                 TTATTGTAAATGTGG  53 6
        mdoG NONE
SH05_RS09185 1870403 .. 1870421 +   -11  -5.40072   ACGAGCCAATAAAAA             TACCGGCG TTA TGCCGGTA             TTTTTTTACGAAAGA 100 156
SH05_RS09190 1871161 .. 1871187 +    -8  -3.06183   GGTATTCGACGACGA         CGTAGACTGTTC CAT GAATAGACTGCG         TTGAATAACACTACG  59 514
SH05_RS09215 1874731 .. 1874757 + -10.9  -2.77005   AACAGAATAAATATC         ATTGCCGGATG CGTGC CATCCGGCAAC         ATTTCACGCTTACTT  77 31
SH05_RS09270 NONE
SH05_RS09275 NONE
SH05_RS09280 1884658 .. 1884674 + -13.7  -4.11692   ATTCGCCTCTTTCAG              CGCCTGC CTT GCAGGCG              TTTTGCCCGTGGGTC 100 88
SH05_RS09285 1886247 .. 1886273 + -14.4  -2.75074   ACGGTGTAACAATGC         ATTCCGGCCTGC AGT GCAGGCCGGAGA         TAATCTTCAGATCGA 100 32
        flgB NONE
        flgC NONE
        flgD 1889433 .. 1889444 +  -2.2  -3.22113   CTTCACATTTCAGGA                GTCA GTCA TGGC                 CTTTTCTCAAGCGGT  43 43
        flgE NONE
        flgF 1891450 .. 1891464 +  -4.2  -2.94633   CATGACAAGTATAAG               TTGCCC GAT GCGCAA               GTTTATCGGGTCTAT  47 52
        flgG 1892385 .. 1892403 +  -8.1  -3.96337   AACTCTAAGGCTTAA             CCGGTGG CAGGT TCACCGG             TTTACTGATTTTTGA  74 33
        flgH NONE
        flgI NONE
        flgJ NONE
        flgK NONE
        flgL 1897894 .. 1897922 +  -8.8  -5.54264   TGGGTATGTTTTGTC        TGCCTGCTCTGG GATCG CTGGGGCGGGCA        TTTTTTTGCCTATTT 100 67
SH05_RS09365 NONE
SH05_RS09370 1902798 .. 1902809 +  -5.8  -2.72144   GATAATGGGCGGTTG                GCCT GATA AGGC                 GTTTACGCCGCATCA  52 58
SH05_RS09380 NONE
        rpmF 1904393 .. 1904438 +  -4.2  -4.07568   ACCGCGGCCGCAAGG TCATCGCTAAG--TAATCACGC ATCT GCGTGATGAAGCTTAGTGAGGA TTTTCCCCAGGCAAC  59 12
SH05_RS09390 1905565 .. 1905582 +  -5.5  -3.57263   TGCGGTAGCAGGACG             CTGCCAG CGAA CTCGCAG              TTTGCAAGTGACGGT  57 33
SH05_RS09395 1906554 .. 1906564 +  -2.4  -2.92267   CGGTGGATTCACCTG                 GGGC TCC GCGC                 TGGTTCGTTTCTAGG  42 1
SH05_RS09400 NONE
        fabG 1908299 .. 1908313 +  -7.8  -2.62642   AAAATGCTCATGTTG               CGCGCA GTC TGCGTG               GTTATGAGTAATAAT  60 54
SH05_RS09410 1908726 .. 1908752 + -13.1  -5.02287   GGCGTAAGTGAACAT        CTCCAGGCGGTC GTTC GACCGCCTG-AG         TTTTATCTTTTTGTC 100 34
SH05_RS09415 1910072 .. 1910087 +  -8.2  -5.52096   TCCACCCTTATAAAA              GGTCCG CTTG CGGGCC               TTTTTTCTTAGCTTT 100 51
SH05_RS09420 NONE
SH05_RS09425 NONE
SH05_RS09430 NONE
SH05_RS09435 NONE
SH05_RS09440 1914442 .. 1914460 +  -4.6  -2.79098   AATCCATCCGTTGAA             TGAGTTTT TTT AAAGCTCG             TAATTAATGGCTAAA  49 27
SH05_RS09445 1916193 .. 1916210 + -12.7  -5.04987   CGTTGGGGAGACTAA             GGCAGCC AGAT GGCTGCC              TTTTTTACAGGTGTT 100 50
SH05_RS09455 NONE
SH05_RS09460 NONE
SH05_RS09465 NONE
        thiK NONE
SH05_RS09475 NONE
SH05_RS09480 1922801 .. 1922814 +  -3.9  -4.34402   TTTCAGCAACAAAAC               TTGAT TAAC ATCAA                TTTTGGTATGACCAA  63 275
SH05_RS09485 1924310 .. 1924326 +  -2.2  -3.48924   GCCCTTGAGGAACAG              CGCG ATCGGCAGC CGCG              TTGTATCAGGCATCC  47 80
SH05_RS09490 1925027 .. 1925053 + -10.1  -5.43866   GTACTCTGCAATTTG         GCCCCTCATTC GCTCA GGCTGAGGGGC         TTTTTTTGCGACTTA 100 48
SH05_RS09500 1926235 .. 1926261 + -18.8  -5.60993   CTACTGCTGATTTTT         TCCCCGCGACAT GCC GTGTCGCGGGGA         TTTTTTTATCCGGGC 100 64
SH05_RS09520 NONE
        lolD 1934184 .. 1934200 +  -5.1  -2.98947   CTGATGGGGGCGGAG              TAATGGC GAT GCCTTTA              TCGTTATTAATTGGC  52 23
SH05_RS09530 NONE
SH05_RS09535 NONE
SH05_RS09540 1937593 .. 1937609 +  -6.5  -4.36063   AACCTAATGTGTTGG              TGCTGCC GGG GGGAGCA              TTTTCATGCTGTTGT  72 393
SH05_RS09580 1943944 .. 1943972 +    -9  -3.06133   GGAAGTAAGCGAAAA       G--GGATGCGGCAT GTG ATGCCGCATCCGGC       TTAAATCCAAACTTA  68 33
SH05_RS09625 1953262 .. 1953286 + -16.5  -5.46657   GTTTGTTAAATTTAT          TAACGGGAGCG TAA CGCTCCCGTTG          TTTTTTGTTAGGCTG 100 48
SH05_RS09640 1956522 .. 1956556 +  -7.8  -3.78312   GGTGAGAAATTCAAT     GTGGCGTTGAGATGCT TAA AGGTTCACAACGCTAC     TTTGCTCCATCCTTT  72 93
SH05_RS09665 NONE
SH05_RS09670 NONE
SH05_RS09675 NONE
SH05_RS09680 1962385 .. 1962397 +  -2.6  -2.79327   TCACATTGAGTCCTA                CGGG ATCCG CTCG                CTTTAACTGAGGTAA  42 7
SH05_RS09685 NONE
SH05_RS09690 NONE
SH05_RS09695 NONE
SH05_RS09700 NONE
SH05_RS09705 NONE
SH05_RS09710 1965938 .. 1965949 +  -5.8  -2.53715   TCTGCTTTTGAAAGT                TCGC ATCT GCGA                 CTTCATCATCATGAG  49 206
SH05_RS09725 1967197 .. 1967207 +  -2.6  -3.29854   GTCGTGAAAAATTGA                 TTAA AGA TTAA                 TATTATGCATGTTTT  46 117
SH05_RS09730 1968466 .. 1968490 +   -10  -5.05113   ATGTGTTAAATATTG          AAACGGGCGT ATAAC ACGCCCGTTG          TTTTATTTATGTGGA 100 446
SH05_RS09760 1972900 .. 1972916 +  -2.2  -3.12999   TGAATAATGCAACAG              CCTGAT TATTT AACAGG              TTAGCTATGAAGTCG  43 34
SH05_RS09765 NONE
SH05_RS09770 NONE
SH05_RS09775 1973963 .. 1974004 + -23.3  -2.62616   ATGTCCGCAATATCA GGTGTCAAGAATGGAGAGT TCTC GCTCTCCATTCTTGACGCC  TGATATCCCGCCTAA 100 126
SH05_RS09780 NONE
SH05_RS09785 1976164 .. 1976186 +    -7  -5.03994   TGCGCAAATAGTTGT           CAACCCTGGT GTT ATCACGGTTG           TTTTTATATATCACC  90 122
SH05_RS22970 1979440 .. 1979451 +  -5.8  -2.77899   TTTTAATATTGTAGT                CCTG CGCC CAGG                 TCATTGGTGCGAAAA  51 351
SH05_RS09820 1980789 .. 1980804 + -10.4  -4.54727   CCATCAACGATTAAA              CTGCGC TTCG GCGCAG               TTTTCGTTTACAGGA 100 41
SH05_RS09840 1983911 .. 1983925 + -11.4  -2.56046   CATTAACGTTTATGA               CGGGGA GAG TCCCCG               TCGGTTGACATTTAC  79 102
SH05_RS09850 NONE
SH05_RS09855 1984881 .. 1984911 +  -2.4  -4.34402   ACAAATAACCGATAT       CCGGCGGTGGCA TTATCTT TGTCGGCGCGGG       TTTTCATATCCACGA  58 33
SH05_RS09860 1985608 .. 1985636 +  -8.9  -3.09015   CGCGTTTTGTAATAC        TTTTTGCCGCC TGAAAGC GGCGGCAAAAC        TTGCATCGCTGTGCC  69 29
SH05_RS09865 1986234 .. 1986274 +  -4.1  -2.60615   AGCGCTCTGTCATAA  TGAGAGTTACCCGAT ACCTTATTATC AACAGGTAACTCTCA  ATCTTTAAAAAACGT  45 117
SH05_RS09875 NONE
SH05_RS09880 1989533 .. 1989543 +  -2.4  -3.28712   AGGCGACAAACACTT                 GCGG CAC CCAC                 TTATCCAGCGGCAGC  45 238
SH05_RS09895 1992546 .. 1992561 + -10.4  -5.80727   CGTTTAAAGAGCAAA              CCCCTC AAAC GAGGGG               TTTTTTGTTGTTTTT 100 48
SH05_RS09905 NONE
SH05_RS09910 1996922 .. 1996948 + -10.3  -3.53224   AGCCATTGCCCATGA         TAGTGTCCATT AAAAG GATGGACACTA         TTTCCCCGGAACCTG  80 132
        emtA 2000665 .. 2000679 +  -5.6  -4.58283   CGATGTAAATCAGTC               GCGCAC TTT GTCCGC               TTTTTCCCGGGCTTC  75 33
SH05_RS09935 2001861 .. 2001890 + -12.9  -3.59979   TAAGATTTTCATAAG       GCGGATAGCGATA CAGA TGCCGCTATCCGC        TTTCACATCAGAACG 100 38
SH05_RS09940 2002484 .. 2002541 + -10.6  -2.74563   AAAACCATAGCTATG GTGTTATCTGCCGACAACGCCATCCGG AGAAG CCGAATGACGTTGTCGG-AGTAAGCGC TGGTTAAGGTGTGGG  75 43
SH05_RS09965 2009877 .. 2009888 +  -4.4  -3.54146   CGATTTCTGATACAT                CAGA GTGA TCTG                 TATTTCATTCCGGCG  52 51
SH05_RS09975 2013509 .. 2013526 + -11.3   -4.6709   CGGTGAAATGAAAAA             TCCACGC AATT GCGTGGA              TTTTATATACTTTTG 100 192
SH05_RS09990 2015952 .. 2015981 + -11.5  -2.87963   AAATAATGCAGTTTG       CTGACCAGTCAGT TTGC GCTGACTGGTCAA        TCTCGTACTTATAAA  81 42
        hemA NONE
        prfA NONE
SH05_RS10025 NONE
SH05_RS10030 NONE
SH05_RS10035 2024971 .. 2024987 +    -3  -2.61216   AATAAATAACATCGC              GCATAA ACATA TTGTGC              TGCATTAATTAATCG  42 1
SH05_RS10040 2026207 .. 2026248 + -10.1  -4.78848   CTGGTTCAAGATTAG CCCCCGTTCTGTTGTCAGGT TGT ACCTCTCAAC-GTGCGGGGG TTTTCTCTTTCCAGC 100 347
        chaB 2029224 .. 2029236 +  -3.4  -3.15346   ATCGTAAAACCGGTC                GCTT AGTTA AAGC                TATTCGTGCGGTGTT  46 34
SH05_RS10070 2030526 .. 2030543 +  -4.1  -4.66264   ACTGCTTCTGCAGCG             TCTGACC AATC GGTCACA              TTTTTAAGGATTTTC  68 483
SH05_RS10080 2032117 .. 2032131 +  -2.8  -4.40894   CATTTTCTTCAGCAT               GTGC TTGACGT GCAC               TTTTACTGTGCTTTC  62 98
SH05_RS10095 2034749 .. 2034764 +  -4.8  -3.29324   AAAGTTATCTTATCG              TTTGAT TTAC ATCAAA               TTGCCTTTAGCTACA  53 46
SH05_RS10100 2036361 .. 2036379 + -12.4  -5.64274   ATTTGATTATCCTTT             GCGCGGCA TGA TGTCGCGC             TTTTTTTATGCGTCA 100 172
        narZ NONE
        narH NONE
SH05_RS10115 NONE
        narI 2043414 .. 2043429 +  -8.2  -5.60993   TTTAGTTCACATAGA              CCCTGC TTCG GCGGGG               TTTTTTTATGGGCAC 100 47
SH05_RS10125 2044278 .. 2044294 + -12.3  -3.57797   CCTCACCCTTCGGGC              CGTTGCC TGT GGCAACG              TTCTCTCGCTTTCGC 100 453
SH05_RS10150 2046995 .. 2047010 +  -7.6   -2.7264   GGACGAACTTTTGCC              GTTGGT ACGC ACCAAC               ATTTGACCAGAATTT  60 4
SH05_RS10155 2048238 .. 2048258 +    -4  -2.79796   CCTCCTTTTCAGAAC           TTAGC-CCC TTCG GGGTGCTGA            TATACTGGGATGCGA  46 142
SH05_RS10160 2049258 .. 2049279 + -12.3  -5.66684   GTGTTATCCACGAAA           CGGCGTTGA GCAA TCGACGCCG            TTTTTTTATAGCTTA 100 52
SH05_RS10170 2051349 .. 2051375 +  -9.3  -4.77165   TTTTGATATCTTAAC         CGACCTCGGCC TTGAT GGTCGGGGGCG         TTTTGTTATGAACAC 100 364
SH05_RS10190 2056128 .. 2056145 +  -8.4  -3.98113   TCCTTTCAAATGAAA             CGGAGC TGCCAT GCTCCG              TTTACTTCGTCATTA  77 42
SH05_RS10195 2058488 .. 2058516 + -15.3  -3.16187   AGCACTAATGGCAAT        ACGTGGGGCAGGA GTG TCCTGCTCCACGG        TGTCTGATTTTTATC 100 33
        oppB NONE
SH05_RS10205 NONE
        oppD NONE
SH05_RS10215 2062445 .. 2062464 + -13.6  -4.59773   CTTTAAAAACAATAA            GGGCTGAC AGTT GTCAGCCC             TTTTTCACGCTAAAA 100 35
SH05_RS10230 2064626 .. 2064664 +  -9.7  -2.50438   GCGATCTACAATATC   TAAATGTACTGGGCACC ATTGC GGTGCCCAATAAGTTTA   CTCTTCCGTCTTTAA  70 23
SH05_RS10245 2067481 .. 2067514 + -16.9  -3.14564   AATTCAGTAAGCAGA     AAGTCAAAAGCCTCC GACC GGAGGCTTTTGACTA      TTACTCAACAGGTAA 100 31
SH05_RS10265 2070723 .. 2070739 +  -2.2  -5.00138   GATCAAGAATAGTTT              CCAGTT GAACA ATCTGG              TTTTTGGTTTCACTA  71 423
SH05_RS10310 NONE
SH05_RS10315 NONE
SH05_RS10320 2082438 .. 2082464 +   -11  -3.01712   CAGACTTTACTATCA         GTGAGTCAGA TGTAAGT TCTGACTCAC         TGTTGCACAAAAGCA  79 155
SH05_RS10325 2083403 .. 2083423 +  -8.3  -4.62872   CGGTTAATCAAAGTA            TGCCGGA CGTCATA TCCGGCA            TTTTTACAGATTAAT  91 34
SH05_RS10345 2086057 .. 2086076 + -10.7  -4.58773   GATGTAAAAGACAAA            CGCGAGG CTAAGA CCTCGCG             TTTTGCTTTAATCAA 100 34
SH05_RS10355 2086571 .. 2086582 +  -4.4  -3.14848   CCAAGACCTGTTAAC                TCAG TCAC CTGA                 ATTTTCGTGAACAGA  49 4
SH05_RS10360 2089344 .. 2089361 + -10.5  -5.49234   GTTTTTATAAACAAA             GGGTCGC GAAA GCGGCCC              TTTTTTATTGCATAT 100 57
        cysB 2090510 .. 2090543 +  -9.7  -3.35613   AATTTCTTGCGTTAT     TTTCGGCACCTTT TATGTAGC GAAGGTGCCGGAA      TATATTCTCTTTTGT  76 39
SH05_RS10370 NONE
SH05_RS10375 2091342 .. 2091357 + -11.8  -3.66643   CTCACTGATCCTTGA              CCCCGC TGCG GCGGGG               TTGTCATTTGCTTTG  93 242
SH05_RS10385 2094180 .. 2094214 + -11.6  -2.52896   TTGAAGTAACAACTA     TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA     TGAATTACACAATGC  79 32
SH05_RS10395 2095816 .. 2095841 +  -4.1  -2.90813   CAATGCGTGTGGATG         CCATTT-CGC AGACGGC GCGAAAATGG         TACTTTAAAGGGCTA  47 80
SH05_RS10400 2096209 .. 2096223 +  -2.1  -2.81738   GCACTCGTCAGCGGC               GAAGG AATAA CTTTC               TATGCTGGAGTTGTT  41 16
SH05_RS10405 2097377 .. 2097389 +  -2.6  -3.18031   ATTAAACCGATTCGC                GGTC TTGAT GGCC                TGTAATTTTTAAAAA  44 8
SH05_RS10410 NONE
SH05_RS10415 2098660 .. 2098679 + -13.6  -3.71687   CGGTTAACATAAAAA            GCCACGGA TATA TCCGTGGC             TTTCGAATATTTTAC 100 34
SH05_RS10440 2102897 .. 2102908 +  -3.6  -4.32857   CGCTGCGAAACGGGT                GTCG GTCC CGGC                 TTTGTCTTTCAGGAA  65 355
        puuD NONE
SH05_RS10515 2118237 .. 2118250 +  -5.3  -2.70932   GCGAATCCCGATGAG               CTTAC TCAG GTAAG                TGATTCGGGGGAGCG  49 127
SH05_RS10520 NONE
SH05_RS10525 NONE
SH05_RS10530 2122701 .. 2122715 +  -8.6  -4.77438   CCCTTGTTGCAAACT               GAGTTG CAG CAACTC               TTTTTCCTGCTGCAT  93 244
SH05_RS10540 NONE
        pspB 2124684 .. 2124700 +  -2.1   -2.5655   CATCCGAACTGGAGG              GATCGCT AAT GGCGGGC              ATTAATCTCAATAAA  39 17
SH05_RS10550 2125036 .. 2125056 +  -3.4  -2.62463   CACGTTACGTAGCCG           TTTCCGTCA ACTG TGA-GGAAA            GTTATGAATACTCGC  42 10
SH05_RS10555 NONE
SH05_RS10560 2125687 .. 2125702 + -11.8  -6.30182   AGAATTCACCATGAG              CGGCGC TTAT GCGCCG               TTTTTTTTTCTGTCA 100 42
SH05_RS10565 NONE
SH05_RS10570 NONE
SH05_RS10575 NONE
SH05_RS10580 2130610 .. 2130622 +  -2.7  -3.10597   GCTAAAGCGGCCAGT                TTCTT TAC AAGGA                GTTTTAAATGAAAAA  44 36
SH05_RS10585 NONE
SH05_RS10590 NONE
SH05_RS10595 NONE
SH05_RS10600 NONE
SH05_RS10605 NONE
SH05_RS10610 NONE
SH05_RS10615 2138666 .. 2138677 +  -2.2  -4.09739   GGCAACGGTAATATT                CTGT GGTG ACGG                 TTTTCCAGAAATTAA  56 172
SH05_RS10625 NONE
SH05_RS10630 2142245 .. 2142264 +    -5  -3.34517   CGAAAAATAATGCAA            TATCGGGT GCTG ACCGGATA             TCTTTACGCCGAAGT  53 31
SH05_RS10635 2143931 .. 2143971 + -12.7  -3.61609   GAACGAAGAGTAAGC  GCGAATATGCCTGATGGTG CAA CACCATCAGGCATATTAAA  TTATGCTTTCAGTAC 100 28
SH05_RS10645 2145837 .. 2145871 +  -8.4  -2.94365   AATGCGGTGTATAAG     CTGGCACAGCGCCTGG GTT TCAGGTTCGGAGCCAG     GTTTGTCACCTGTCA  61 300
SH05_RS10665 2148547 .. 2148560 +  -6.7  -2.80195   GGCTGAAGTATAAAG               GTGCT GTTT AGCAC                TACTTGCTGATACAT  57 15
SH05_RS10670 2148751 .. 2148761 +  -2.6  -3.05561   TTTTGGAGACTATTA                 TTTA CAC TAAA                 TCTGATTTGATATAT  43 5
SH05_RS10675 2150519 .. 2150546 +  -8.4  -2.74525   TTGATGTGATGGGAA        CTGGCGTTACCC TTGT GCATAACGCCAG         TGATGTCTGATTTAG  64 37
SH05_RS10685 2152914 .. 2152925 +    -3  -3.35996   ACCTTCCCTAACTAA                TCAA TGCG TTGA                 TTGTAAATCCAGCTA  47 180
SH05_RS10690 2153300 .. 2153317 + -12.7  -3.47751   AGTAAGTAAAAAATA             GGCCCGA TAAC TCGGGCC              TTGTCAGTTATTGAA 100 36
SH05_RS10730 2161593 .. 2161605 +  -9.1  -2.88069   GGTAATACGTTGTTG                GACCG ACC CGGTC                TGGTTATCATATCGC  67 302
SH05_RS10740 2162694 .. 2162733 +  -3.4  -4.75372   GTAATCCGGTCATCG  CGTCATGGTGAGCAGCATG TTC CA-GCTGCTCCTCCAGCCG  TTTTTGCTCAGTAAT  71 510
        zntB 2164890 .. 2164909 +   -10  -5.85178   ATTGATTCGTACGAC            GCCGACTT TGAT GAGTCGGC             TTTTTTTTGCCTGTT 100 215
SH05_RS10755 NONE
SH05_RS10760 2166609 .. 2166623 +  -7.1  -3.30243   GGGATTGCCGGATGC               GACGC TGGCC GCGTC               TTATCCGGCCTCCAT  64 83
SH05_RS10815 2175319 .. 2175337 +  -7.4  -4.11394   TGCCTAATTGATTGT             CAATAGGC TAT GCCTAATG             TTTTGAGCGTAACCT  73 518
SH05_RS10825 NONE
SH05_RS10830 2176750 .. 2176761 +  -2.2  -2.88366   GGCGGCGGTTCTTCC                GACG ATTC TGTC                 ATTGTTCATTAAGCA  41 2
SH05_RS10835 NONE
SH05_RS10840 NONE
SH05_RS10845 NONE
SH05_RS10850 2179332 .. 2179343 +    -3  -4.00042   TAACTACAATATGAT                TCAT TTTG ATGA                 TTGTTTCATAAGGAA  56 46
SH05_RS10855 2180989 .. 2181019 +  -8.3  -4.71426   TTACCAGCAACACCT      C-CGTCCCAGTAGC ACTG GCTGCTGGGGTGCG       TTTTATTCATAAAGC  91 108
SH05_RS10860 NONE
SH05_RS10865 2181641 .. 2181660 +  -4.2  -3.33261   GATACGATAAAAAAG            CCATAGCT GCCC AGCGGTGG             TTATCGGAGTTCGGG  51 20
SH05_RS10870 2182078 .. 2182093 +  -6.8  -5.55769   TTATGTCGCCTGAAA              CCCACT TCGC GGTGGG               TTTTTTGTTGTCAGG  91 149
SH05_RS10875 NONE
SH05_RS10880 2183362 .. 2183377 +  -3.2  -5.03747   GCAAACACATCGAAT              CAGCCT ATTT AGGCTA               TTTTTTCCACCATTT  71 117
SH05_RS10890 2184678 .. 2184697 + -12.1  -5.26316   CACAGTGTTATGACA            GCCCGCC GGTTCA GGCGGGC             TTTTTTGTGGGGTGA 100 53
SH05_RS10905 NONE
SH05_RS10910 2188730 .. 2188742 +  -3.4  -4.78477   GGAAGACGTAAAGCA                TCTC ACACC GAGA                TTATTTTTTATATGT  68 103
SH05_RS10940 2197215 .. 2197260 +  -3.3  -4.88736   AAAGCGGTTACACAT GCTGCCGGAAATCATCATT TTTTCACC AAAGCTGATTTCTGGCGGA TTTTTATCGCTGGTC  74 250
SH05_RS10955 NONE
SH05_RS10960 NONE
SH05_RS10965 2202013 .. 2202039 + -15.3  -3.34192   ATCTGTTTTAACTAA         TTGGCGTTGCA GTACA TGCAACGCCAA         TTAGTTAGCGGAATT 100 166
SH05_RS10975 2204709 .. 2204723 + -11.4  -5.71712   CTCATAAGTAAAAAA               CGGCAC CTG GTGCCG               TTTTTTTGTCTGAAA 100 50
        paaA NONE
        paaB NONE
SH05_RS11000 NONE
SH05_RS11005 NONE
SH05_RS11010 NONE
SH05_RS11015 NONE
SH05_RS11020 NONE
SH05_RS11025 NONE
SH05_RS11030 NONE
SH05_RS11035 NONE
SH05_RS11040 2219102 .. 2219158 +  -5.3  -2.89534   AATATTGTTGGTGCC TGACGTATCG---TCTGGCCCTGGTG GGGTAAAG CGCCAGGGCCAGAAGTCGATACGACC TGTGCTATGATTCAT  50 23
SH05_RS11045 NONE
SH05_RS11050 2220759 .. 2220789 +  -9.3  -4.49906   TTGTCCCTTTAATTA      TAAAGCAGAG-TTA TGTT TAAGCTCTGCTTTA       TTTATTTGAGTATTA  95 57
SH05_RS11055 2223677 .. 2223689 +  -4.1  -3.44051   ACCCAGCGCACTATG                CGGAT GCC ATTCG                TTATAATGCTCGAAC  52 119
SH05_RS11070 NONE
SH05_RS11075 2229702 .. 2229725 + -11.8   -5.7946   CATGTGATCCCTAAA          CCGCAACGCTG ATA CAG-GTTGCGG          TTTTTTTATTGCCGG 100 48
SH05_RS11080 2230761 .. 2230778 +  -5.6  -6.28401   AACGAATATACAAAA             GGGAAA GATGCA TTTCCC              TTTTTTTCTTTTTTA 100 39
SH05_RS11085 NONE
SH05_RS11090 NONE
SH05_RS11095 NONE
SH05_RS11100 NONE
SH05_RS11105 2237936 .. 2237950 +  -3.4  -4.18494   TTATGCAGAAACAAT               GCTGTC GAT GGCTGC               TTTTGCGTCAGACTG  58 94
SH05_RS11115 2242620 .. 2242637 +  -3.4  -3.68351   GGCGATGGAGCAGAT             TAGCGG TTAACC CTGCTA              TTTGCCTGATAAAGA  51 16
SH05_RS11120 NONE
SH05_RS11125 2245473 .. 2245485 +  -6.9  -3.00017   TTCACCAGTTGTAAA                TCGCC CAC GGCGG                TAATTTCCGTTTGCG  56 161
SH05_RS11145 NONE
SH05_RS11150 2247801 .. 2247832 + -11.6  -3.52009   CTAGGTTCATTCGTT      GGCCTCGGTTGATA GAAA TATCGGTCGGGGCC       TTCGTCTTTCTGATT  89 310
SH05_RS11160 2249934 .. 2249963 +  -5.6  -4.07568   TCCCGGAACAGGCAG       GGCCACCAGCGT GGCATG ACGCAGGTCGTC        TTTTACAGCGCCAGA  65 183
SH05_RS11170 2252400 .. 2252412 +  -2.7  -3.74762   TGCATATTCTCTCAG                TTCAA CAA TTGGA                TTATTAATAAATATT  52 128
        mdoD 2254190 .. 2254213 + -14.6  -2.90075   TAATCGTTTTTTCTT          CGGCACCTTC TTCG GGAGGTGCCG           TCTGGTTAAACACGA 100 38
SH05_RS11185 2254552 .. 2254568 + -10.8  -5.02074   TGTAAACTTTCCTAA              GCCGCC AGCCA GGCGGC              TTTTTTAACAACTGC 100 36
SH05_RS11190 2255554 .. 2255566 +  -3.3  -3.05596   TGGCAAAATCAAAAA                CTTCG GCG CGATG                TTCAATAAAAGCATA  43 436
SH05_RS11200 NONE
SH05_RS11205 NONE
SH05_RS11210 2258800 .. 2258819 + -13.6  -4.85599   AAAGTAGTTCCAGAC            GCGCCATC GTTA GATGGCGC             TTTTTATCCGGTGCG 100 34
SH05_RS11215 2259277 .. 2259287 +  -4.6  -5.04249   ACAATGCCTTCCACG                 CCGG ATA TCGG                 TTTCTTTTTTCACAG  81 275
SH05_RS11225 2260899 .. 2260916 +  -4.8  -2.73124   CAACGTTGATCTTTA             TCCGGA TGCGCT TCCGGG              CTTTGGCAAATAGCC  46 393
SH05_RS11235 2262403 .. 2262423 +  -6.1  -4.63527   TTCGCAACGTCGCGC            TTGTGGCTA AAA TAGCCGCCA            TTTTTCAGCTACTGG  77 54
SH05_RS11240 2264902 .. 2264919 +  -7.1  -4.30177   AAATTACACACGGAG             GTAAACA CTAA TGTTTAC              TTTGTTGATATACTC  75 519
SH05_RS11250 2265114 .. 2265124 +  -3.2  -3.15579   GCAATCCTGAAACAA                 CTCG GTT TGAG                 TTAATCGCCAATTAA  46 11
SH05_RS11255 2265607 .. 2265624 +  -2.7  -2.63596   TACAGTTAACGAAAA             GTTGTCA TTTT TAACAAC              TGATATAGACTGCCG  41 42
SH05_RS11260 2267069 .. 2267079 +  -3.2  -3.08036   ACTTATTCAAGAACG                 GCTG TAA TAGC                 GTTTAATTTAATTCC  46 19
SH05_RS11265 NONE
SH05_RS11270 NONE
SH05_RS11275 2270417 .. 2270447 +  -2.6   -3.4331   GTTCGTGAAACGTCT      GG-GAGCGTTC-GA TGCAC TCTGAACGCGCACC      GTTTTTCCTCAAACT  48 4
SH05_RS11280 NONE
SH05_RS11285 2272685 .. 2272709 +  -4.3  -2.62263   GATAATATTGCAGAT          CGTAAGAGTAT GAG ATGATCTTGCG          TACTGTCAGAGCACT  45 42
SH05_RS11290 2272997 .. 2273013 +  -2.2  -2.60992   GAAAAAACTTGATGC              ACGTCA AAAAA TGACGC              ATATTTGCGCGCGTT  40 126
SH05_RS11295 NONE
SH05_RS11300 2273914 .. 2273932 +  -3.1  -2.52623   GGTAGAGGAGGTCTG             GGTGATG CGCAC CATCAGC             GTGTTCTGGACAACC  40 392
SH05_RS11315 2275705 .. 2275723 +  -5.2   -2.7728   ACTTCGGCAAAGTGG             TGATCCGC GTG GCGGGTGA             TGATTAAAGTTTCAA  50 0
SH05_RS11320 2276833 .. 2276846 +  -5.9  -3.76811   GACGAGAGTATAAGA               CGGCG CTTT TGCCG                TATTTTCATCATCTG  63 265
SH05_RS11330 2280116 .. 2280138 + -14.9  -4.19953   GTCAGTAATCTGAAT           TTGCCCGGC ACGTA GCCGGGCAA           TTTTGCAATTAACTC 100 107
SH05_RS11340 NONE
SH05_RS11345 2283305 .. 2283323 +  -5.4  -4.35992   CAAACCATCATTCAT             TTCAATGA TTG TTATTGAA             TTATTTATTGTTGTG  68 512
SH05_RS11350 NONE
SH05_RS11355 2286149 .. 2286178 + -11.7  -3.62354   GGCAGGGCAAGATCA       TGAAAATTGTGAT GTAA ATCACGATTTTCA        TCTTTGCTTTAACGC  90 104
SH05_RS11360 NONE
SH05_RS11365 2288622 .. 2288632 +  -6.8  -3.87104   GGGCTTTCGTAATCT                 TGCC CTG GGCA                 TTATTGTCGTATAAA  67 29
SH05_RS11370 NONE
SH05_RS11380 2290548 .. 2290579 + -16.6  -2.52795   TAATTTATGTCAGGT      TGCCGGATGCGGCG TAAA CGCCTTATCCGGCA       TACATTAGCCCGGTT 100 38
SH05_RS11430 NONE
SH05_RS11435 NONE
SH05_RS11440 NONE
SH05_RS11445 2307677 .. 2307708 + -13.9  -3.21395   TTTTGAACTTTAAGC      TGAAAATGGCGCT GTAAAA GGCGCCATTTTCA       TATTGTAGACAACGT 100 45
SH05_RS11475 2312737 .. 2312764 + -11.3  -3.67558   AGCATTGCCGGATGA        CGCGTCAGGCG CGTGAA TGCCTGATGCG         TTGTTAGCATCTCTA  90 41
SH05_RS11635 NONE
SH05_RS11640 2359706 .. 2359716 +  -6.8  -3.09803   TAAAAAACGGGAGGC                 CGCA TAA TGCG                 TATTCGCTACGGTTG  59 19
SH05_RS11645 2360697 .. 2360721 +  -2.1  -2.54732   GGGCCAATAACCCAT          TGCCATAAAGG ATA TCTTCATGACA          CTTCATCGCTTTAAG  39 18
SH05_RS11650 NONE
SH05_RS11655 NONE
SH05_RS11660 NONE
SH05_RS11665 2364247 .. 2364260 +  -5.3  -3.07043   CGAAGCCAGTACACG               CTGAA GATC TTCAG                TCTTGAGATAATGAG  53 503
SH05_RS11675 2365188 .. 2365200 +  -3.3  -3.80893   GAAAGTAAGGCGCGC                CGGAA GTG TGCCG                TTTGCCTTCTGCCCT  53 376
SH05_RS11705 2371352 .. 2371364 +  -2.7  -3.68936   AGGGATATCAATGAG                CTATT TTT GATAG                TTCTTGCGGTTAATA  50 27
SH05_RS11710 NONE
SH05_RS11715 2373890 .. 2373903 +  -9.5   -5.1861   ACGCAATAGTTGAAA               GGCCC ATTC GGGCC                TTTTTTAATGGTACG 100 32
SH05_RS11725 NONE
SH05_RS11730 NONE
SH05_RS11735 2375882 .. 2375899 + -12.7  -3.73068   ATGTAGTTTGTTCTG             GCCCCGA CATC TCGGGGC              TTATTAACTTCCCAC 100 35
SH05_RS11745 2378160 .. 2378176 +  -5.7  -4.40298   GATTCGAGCAAGACC              GTGGGGG CAG CCCGCGC              TTTGTTGATTTAAGT  70 1
SH05_RS11750 2378431 .. 2378467 + -10.2  -4.82901   ATAATCCCTCACCTA   ACCGGCCCCTTGTTACA GTTG TGTA-CAAGGGGCCTGA    TTTTTATGACGGCGA 100 50
SH05_RS11765 2380960 .. 2380988 + -13.9  -2.58292   TTACTGCTATAACCA        GGCTGGCCTGG CGATATC TCAGGCCAGCC        ATTGGTGGTGTTTAT  95 29
SH05_RS11775 2383937 .. 2383954 + -10.5   -3.8591   TCAGTAATTTTTATA             CCCGGCG TAAC TGCCGGG              TTATTGCTTGTCACA  86 34
SH05_RS11780 2384712 .. 2384735 + -13.2  -3.63922   AGAGTAATTCATTTC          CTCTCATCCC ATCC GGGGTGAGAG           TCTTTTCCCCCGCCT 100 34
SH05_RS11785 2385090 .. 2385113 + -11.8  -5.26875   ATGAACTAAGCGTGT          G-AATGCCGCC GAT GGCGGCATTGC          TTTTTTACTTCACGG 100 32
SH05_RS11800 2389130 .. 2389140 +  -2.6  -2.77118   CCGAGTTAAAGCCAT                 TTTT CAC AAAA                 TCGATTTTGGGTCTC  42 185
SH05_RS11805 2390133 .. 2390149 +  -6.5  -5.80003   CAATATGCTCACTGG              CTACCTG CAT CAGGTTG              TTTTTTGTTTCTTCC 100 281
SH05_RS11825 NONE
SH05_RS11830 2393229 .. 2393244 +  -4.6  -3.93984   TCAAATATAACAAAA              CCCCGT AAAA ACGAGG               TTTATGGATAAATTT  61 132
SH05_RS11875 2398021 .. 2398052 + -10.2  -5.08601   ATTGCCCCATTTAAA      GCACAAAACCCGCT CATC AGCGGGTTTTCTAC       TTTTTCTTAACGTCG 100 314
SH05_RS11915 2402417 .. 2402435 + -11.7  -4.11216   AGTGACAGCCGTATT             GTGGCCC TCATC GGGCCAC             TTTTCGCCATCAGCC 100 40
SH05_RS11930 2404002 .. 2404024 +  -4.3  -4.09864   AGCGGACAAATAAAA          GATAACATCA TCAA TGA-GTTATC           TTTTACCACATCAAT  61 21
SH05_RS11935 2404400 .. 2404416 +  -2.1  -3.53343   CCGAAGGCGAAGAAG              CTCTCAG CTT CAGTGAG              TTTAAACAGGCGCTT  47 97
SH05_RS11940 2404970 .. 2404987 +  -6.9  -3.36492   CGGGGTTATTCCTTC             CCCGTTG AGGA CACCGGG              TTGTCAGGTTGACCA  59 289
SH05_RS11950 NONE
SH05_RS11955 2406003 .. 2406014 +  -2.2   -4.4017   AAACCGCTGGGATGA                GGAG TCTG CTTC                 TTTTGTCCCGGTTGA  60 378
SH05_RS11965 NONE
SH05_RS11970 2408673 .. 2408685 +  -3.4  -2.94032   GTAATTAATTTTTCT                GGTT TAATT AACC                CTTTACTTAACCAGT  42 325
SH05_RS11990 NONE
SH05_RS11995 2412447 .. 2412462 +  -4.6  -4.36411   TTTTGATGGTGTAAA              CCCGTT CGAC GGCGGG               TTTTACTCCTTCATC  67 63
SH05_RS12005 2413552 .. 2413574 +   -12  -2.74144   ACATTATCGACTGAA           CGCCGGATAT GAC AAATCCGGCG           ATTTGAACATACAAC  83 42
SH05_RS12010 NONE
SH05_RS12015 NONE
SH05_RS12020 NONE
SH05_RS12025 2420136 .. 2420153 + -12.7  -2.76315   CAGGTTAACAAATTG             GTGCGGG GCAA CCCGCAC              ATTTCAGGATGTTAG  89 33
SH05_RS12030 2420762 .. 2420774 +  -9.1  -3.41073   CTGTTAATTCCTGTC                GCGGT TAA ACCGC                TGTTTCGATAGGATC  73 2
SH05_RS12035 2422627 .. 2422640 +  -3.1   -4.4846   ATTGATTGGGCAACT               GT-GCG CCA CGCTAC               TTTCTTCTTCGCTTA  65 416
SH05_RS12055 2426625 .. 2426654 +  -9.4  -3.62597   ACGCCTGAAAAATAA      GTCCGGACTGCGGT AAAT ACC-C-GTCCGGAC       TTATTGCCAGCTCAA  78 33
SH05_RS12060 2427394 .. 2427424 + -11.9  -2.71924   TCGCGCCTGAAAATT       ACGGTGCTAAGCG GGTAA CGTTTAGCACCGC       CTTTAGCGGAGGGTA  83 70
SH05_RS12065 NONE
SH05_RS12070 2428455 .. 2428478 + -15.3  -3.13403   AAAATAATGTTCAAA          CGCTGCCCG ACAGCG CGGGCAGCG           TCTTCATCAGGCAAG 100 34
        tqsA 2430741 .. 2430753 +  -4.1  -3.53811   CACCAGCATAGCCAG                TGTTC ATC GAACG                TTTAAAGACAATCAC  51 154
SH05_RS12100 2435057 .. 2435073 + -10.8  -3.81062   CAGTTACTCCTATAA              GGCGGC TTGAT GCCGCC              TTTCGCATTTTTAGT  88 46
SH05_RS12105 2436594 .. 2436618 +  -5.7  -3.05384   CGGCGACCTGGATGC          TGGTGGGATAA CGT TCATCCCATCG          TTGGATAGCAAAGGA  54 15
SH05_RS12110 2437355 .. 2437368 +  -4.5  -2.92102   GATGGCGGTCGTCAT               CTGCG TTAA TGCAG                CTTTATCCAGCATAT  50 17
SH05_RS12120 NONE
SH05_RS12125 2439904 .. 2439918 +  -3.6  -2.53119   AAAATAAGTATGTTG               TAACTA AAG TGGTTA               ATATTATGGCGCGTT  44 81
SH05_RS12130 2441297 .. 2441312 +  -5.4  -4.11484   TTTCCCCGGCATGAT              TGAGCT GCCC GGCTCA               TTTTCCGGGATTGAG  65 469
SH05_RS12145 2445474 .. 2445494 + -12.6  -4.27483   AGGCTTATAACACCT            TCAGGCGG CCAGT CCGCCTGA            TTTCATTTTATGGAT 100 83
SH05_RS12150 2447039 .. 2447062 +   -11  -4.34402   AATTCACGGCCAAAA          CGCCGGAG AATTTTCA CTCCGGCG           TTTTCATCTGAAAAC 100 39
SH05_RS12185 NONE
SH05_RS12190 2457794 .. 2457835 +  -8.7    -4.652   CCGCGCTGTTCGTTA ACCCCAATTGCGCAACG TAAAAAAT CGTTGCGCAATCGTGGA  TTTTTACCCTGCTTT 100 25
SH05_RS12195 2458905 .. 2458928 + -15.4  -4.72272   CGCGAAGTAACAAAA          TGGATGGTGC AAAT GCACCATCCA           TTTTTCATGCAAGGC 100 31
SH05_RS12205 2460362 .. 2460384 +  -6.3   -4.3208   GCACTTGTGGAGCGA          CATGCTGCCC GTCC GGGT-GCATG           TTTTCACTTGTCGGA  72 46
SH05_RS12210 NONE
SH05_RS12215 NONE
SH05_RS12220 NONE
SH05_RS12225 NONE
SH05_RS12230 NONE
        rnfD NONE
SH05_RS12240 NONE
SH05_RS12245 NONE
SH05_RS12250 2467830 .. 2467849 +  -7.9  -2.52234   GACATCTGAAGAAAA            GGGGTAA CACCGA TTACCCC             ATTGATAACCTTTCT  60 32
SH05_RS12255 2468216 .. 2468226 +  -2.6  -3.57792   AATCTGCCGTTACGT                 TTTT TGA AAAA                 TTTAACGCTGGATAA  50 90
        tppB 2469960 .. 2469982 + -13.5  -6.36459   GAAACTCTTTTACAA           GCCGCTAAC TTTTC GTTAGCGGC           TTTTTTTTTGTTCAG 100 49
SH05_RS12265 2470655 .. 2470668 +  -5.9  -3.28924   TAAAGTAATAGCCAT               CGGCC CACA GGTCG                TTGTGGGCCGAAATG  57 33
SH05_RS12295 2476013 .. 2476048 + -11.8   -3.5332   CTCCGCGCTAAATAA    GTTTGCGTGTGGTCAG GTTA CTGACCACACGCCCCC     TTCATTTCACCCTTT  91 30
SH05_RS12305 NONE
SH05_RS12310 NONE
SH05_RS12315 2480047 .. 2480074 + -11.2  -3.69902   TTTGTGGATCAAGAT        GCCCGC-CTGCGG ATT CCGCGGCGCTGGC        TTTGCCATCTTTGGT  81 274
SH05_RS12335 2482274 .. 2482293 +  -4.9  -5.24129   AAAACATTATTGCGA            CGCCTGC CGTTTA GCAGGCA             TTTTTTATCACCAGA  80 12
SH05_RS12340 2483435 .. 2483452 +  -9.8  -2.78384   AATCCAACATTGCGA             GCGGCG TAAAGC CGCCGC              TATACTAAAACAACA  72 39
SH05_RS12345 2483915 .. 2483942 +  -9.9  -3.46647   GGGCAACTAATCTCC        TGCCGGGCGTGA ACTCA TCGCGCCCG-CA        TCTTTACTGCATCGA  78 31
SH05_RS12350 2484667 .. 2484698 +  -7.4  -2.79679   AGGTGTAATCGAGTC      GATGCCTGATGACAT GCA ATGAT-TCAGGCATC      TATAGTGAGGCTATT  59 33
SH05_RS12355 2489377 .. 2489404 + -15.7  -3.01791   GGGATAGAGAAAGGA        CTGACGGATGC CCGTTC GCATCCGTCAG         TATTGCAGGACGGAT 100 34
SH05_RS12365 2490919 .. 2490948 + -12.3  -3.59432   ACACTTCGCTAAAAC       TTTACCCTGTTGT TACG GCAACAGGGTAAG        TTCATCTTTTGTCTC 100 29
SH05_RS12370 2491753 .. 2491774 + -14.5  -5.38326   TGTCAGCAACTGTAA           CGCAGAAGG TTAT CCTTCTGCG            TTTTTGTTTAATTAG 100 154
SH05_RS12385 2494536 .. 2494550 +    -7  -3.07895   ACTATCGTCGTTAAT               CACCCG TTG CGGGAG               TCTCTTCCGGCTCCC  59 27
SH05_RS12395 2496987 .. 2497006 +  -7.1  -2.91276   ACGTCGGATTATAGA            CTCGCGG TTTTTT CTGCGAG             ATTTCTCACAAAGCC  61 225
SH05_RS12400 2498238 .. 2498258 +   -14  -3.60475   CTAAAGGCTATTCTA            TCGCCCCC TCTCC GGGGGCGA            TTTCAGATCAGGCTT 100 37
SH05_RS12410 2500503 .. 2500530 +   -12  -3.90048   CCCGCTAATAAAGAC        AAGGCGCAACCT TCAC GGGTTGCGCCTG         TATTTTTACGCAGGC 100 33
SH05_RS12420 NONE
SH05_RS12425 2502255 .. 2502273 +  -7.5  -3.45037   GTCCACTCGGACGCA             CCAGATT TTCTT AATCTGG             TCTTCTCCTTTTTCC  66 23
SH05_RS12430 2502685 .. 2502699 +  -8.5   -4.3014   ACAGAATTTAATCAA               GGGCG GTTAG CGCCC               TTTTCATCCCTGTCT  82 40
SH05_RS12435 2504651 .. 2504664 +  -8.1  -2.72144   CAATTCTGGCGTTTG               CGCCA AAGC TGGCG                ATTTGCACCAGGTCA  57 276
SH05_RS12475 2512808 .. 2512823 + -11.8  -5.99154   AATTTGTATATCGAA              GCGCCC TGAT GGGCGC               TTTTTTTATTTAATC 100 58
SH05_RS12480 2513344 .. 2513362 + -14.6  -6.02914   CTGTGAAGTGAAAAA             TGGCGCAC ATT GTGCGCCA             TTTTTTTTGTCTGCC 100 47
SH05_RS12535 2525859 .. 2525879 + -16.9  -3.61517   ATAAGTAATTTCTCA            TCAGGCGGC TCT GCCGCCTGA            TTGTTAACCACCGCT 100 33
SH05_RS12540 2526676 .. 2526704 +  -3.1  -3.33922   TTGTTACAACAATAA        TGAACGGATGCTG ACA CAACATCGCTTCA        CTTTTTAAAGCACCT  47 65
SH05_RS12545 NONE
SH05_RS12550 NONE
SH05_RS12555 NONE
SH05_RS12560 NONE
SH05_RS12565 NONE
SH05_RS12570 2534017 .. 2534052 + -14.7  -2.91276   AGAACAAATAATCTG    CAGGCGGCGCAGCTT CTTAAC AAACTGCGCCGCCAG     ATTTATCCAACAAGA 100 30
SH05_RS12585 NONE
        fixB NONE
SH05_RS12595 NONE
SH05_RS12600 2538652 .. 2538672 +   -14  -2.69057   TAATCATGCATCCCA            CAGGCCCG CATCT CGGGCCTG            ATGTTCTGTTTCGAG  95 38
SH05_RS12605 2540366 .. 2540392 + -10.7  -5.02645   TTCGGGGATCACATA         ACCCCGGCGAC TAAAC GCCGCCGGGGA         TTTATTTTATTTCTT 100 49
SH05_RS12620 2543931 .. 2543960 +  -4.3  -4.98468   CATGGGCCTTAGTCG       CCGAATGTACTAG AGAA CTAGTGCATTAGC        TTATTTTTTTGTTAT  74 13
SH05_RS12625 2545152 .. 2545175 + -15.4  -3.86822   CCGCTTCTGAATGCG          TGCCCATTCC TGAC GGAATGGGCA           TTTCTGCGCAACTTG 100 31
SH05_RS12630 2545846 .. 2545881 +  -5.4  -3.64164   TAATCGCTGCGCTCT    CGCGCCATCAGACTGAA TAA TTCATTCAG-TAGCGCG    TTATCCTCTTTTTGC  58 402
SH05_RS12705 NONE
SH05_RS12710 2561227 .. 2561239 +  -9.1  -3.67141   GCCCCGGAGGCATAG                CCCAG CGG CTGGG                TTTCACTGGCATTGT  73 316
SH05_RS12720 NONE
SH05_RS12725 NONE
SH05_RS12730 2564338 .. 2564354 + -10.8  -4.43477   TGGGTTGAGGATAAT              GGCCGC TCCGT GCGGCC              TTTTGATTAAATAAA 100 43
SH05_RS12740 2565716 .. 2565743 + -19.2  -4.15029   CTTCTCGGTTAATGA        CCAGGGGCAGTG ATCT CGCTGCCCCTGG         TTCTTTATCTGAAAT 100 29
SH05_RS12745 2566486 .. 2566502 +  -5.2  -3.70902   CAAAAATCACCTTTC              TGGAAT AAGCA ATTCCA              TTTGAATATAAGAGC  59 46
SH05_RS12750 2568000 .. 2568032 + -12.7  -3.83644   ATTAATTCTTATGCT      GGCAACGGTCCGTTT TGT ATAGGGGCCGTTGCC      TTACTTTTTAAATGT 100 36
        katE 2571793 .. 2571822 + -13.5  -2.95116   AAAATTCCTGCCTGA       TGGGAGGCGGCGC AATT GCGCCGCCTCAAA        TGATTTACATAGTGC 100 26
        nadE 2578987 .. 2579014 +   -12  -2.78371   GCGAAAAAGAGTAAT        TTGTTCACGCCG GATG CGGCGTGAACGC         CTTATTCGACCTATA  73 63
SH05_RS12815 2580509 .. 2580554 + -10.5  -3.53761   CCAGTAAAAATCACG TTTTGCCGGTGGGAACGTGCAA ATT TCGCGCGTTTC-ACCGGCAGCA TTTCGCCACAGATTC  78 468
SH05_RS12855 2588891 .. 2588907 +  -6.5  -2.80816   TCTGGGCGACCTTCC              GCCGCTA ATT TAGCAGC              TCTCCTGGCTCAAAC  55 18
SH05_RS12860 NONE
SH05_RS12865 NONE
SH05_RS12870 NONE
SH05_RS12875 NONE
SH05_RS12880 NONE
SH05_RS12885 NONE
SH05_RS12890 2595056 .. 2595069 +  -2.3  -2.70788   GAAAATTACAACAAA               CTGCG ATAA CGCAA                AGTTTTTCTCAATGC  40 17
SH05_RS12895 2596650 .. 2596662 +  -2.7  -4.26076   GTGCATAACCGGGGT                TATCA ATC TGATG                TTTTGCTGCCAGTGC  60 237
SH05_RS12905 2597684 .. 2597709 +  -7.5  -2.66272   GGCTGCGCTGACTGC         CCGCCTGAACT GAAC ACTTCTGGCGG          TACGTTTACCTCCAC  56 148
SH05_RS12915 2599516 .. 2599531 +  -3.2  -4.30719   GTATTTAACGGATGA              TGCTCC CCAC GGAACA               TTTCTTATGGGCCAA  61 163
SH05_RS12945 NONE
SH05_RS12950 2606367 .. 2606396 +  -9.4  -5.08824   CGTTAAGTCTTGTAC       TGA-GTGGCCGAC AGATC GTCGGCCACATTA       TTTTTTACGTCGACG 100 35
        ansA NONE
SH05_RS12960 NONE
SH05_RS13015 2619457 .. 2619474 + -11.3  -5.82316   ACTGTGATCTAAAAA             GAGCGAC TTCG GTCGCTC              TTTTTTTTACCTGAT 100 52
SH05_RS13020 2620383 .. 2620394 +  -4.4  -3.57507   GGCGCAATCCATTCG                CGTT GCGA AACG                 TTAATTTACGTTAAT  54 10
SH05_RS13035 2624482 .. 2624497 +    -4  -2.73875   ACTGTGCGAATGGTA              TTTGCG CGTA CGTAAA               TCGTCTTAACAACCC  46 1
SH05_RS13040 2625908 .. 2625934 + -11.6  -4.76892   TAAAGGCTAAAACTA         TCAGCCAGGTCA TTA TCGCCTGGCTGA         TTTTTAGCTTACTGT 100 31
SH05_RS13045 2627542 .. 2627560 +  -8.1  -4.20106   GCAAAAATATTCAGA             GCCATGC TTTTT GCGTGGC             TTTTGCATACAATTT  76 43
SH05_RS13050 NONE
SH05_RS13055 2629980 .. 2629991 +    -3  -4.61482   GCAGCAAGCGTAAAG                TAAG CAGG CTTA                 TTATTTTTTGGCAAG  65 264
SH05_RS13065 2630481 .. 2630502 + -11.5   -4.1711   ATCTCGCAATATATC           GGCCTGGCG TTTG CCCCAGGCC            TTTCTTAAACATAGT  93 44
SH05_RS13075 NONE
SH05_RS13080 2633082 .. 2633115 +  -3.8  -3.72984   TCTGCTGGCAATAGA     CCGACGCCGGATTTG CCATA CCAATCT-GCGGCGG     TTTAGGTGCTTCTGG  56 187
SH05_RS13090 2634391 .. 2634408 +  -3.3  -3.09131   TTGTCGCGCATCCAG             CGCTACA TTCC TGAGGCG              TATTCACATCCTTTT  46 12
SH05_RS13095 2634636 .. 2634653 +  -8.4  -3.95219   CTAAAAAATAGCAAA             GGCTGC CTGTGT GCAGCC              TTTGTGCAATTTAAG  77 126
SH05_RS13125 2638684 .. 2638700 + -13.7  -5.87996   ACCAGTTTATTTGAA              CCGCGTC ACT GACGCGG              TTTTTTTATTCGTTC 100 47
SH05_RS13130 NONE
SH05_RS13135 2641475 .. 2641490 +  -4.6   -4.7373   TCGGCGGCGGTATTT              TCCGCC GCTG GGCTGA               TTTTTGATGGAGTAC  71 46
SH05_RS13140 2642476 .. 2642526 + -18.3  -4.26344   GTGTTGGATTTGTAG TTTGCCGAAGCCGGATGTGGCGC TGAGC GCGCCCAGTCCGGCTTCGGAAGA TTTTACTGCGGATAT 100 26
SH05_RS13170 2649770 .. 2649780 +    -4  -3.06515   ATATAGCCTTATCGA                 TAAC ATG GTTA                 ATTTTAAGGATAAGA  47 419
SH05_RS13175 2650127 .. 2650157 + -11.3  -4.84359   AGCATAAATGGGTCA       GGACGCTTTTAAT CACAT ATAAAAAGCGTCC       TTTTTCTCACAATCA 100 55
        pabB NONE
SH05_RS13190 2652559 .. 2652578 +  -6.4  -2.58427   CGCTGTTATTAGTTC            GTTACTGG AAGT CCAGTCAC             CTTGTCAGGAGTATT  54 171
SH05_RS13195 2653971 .. 2653997 +   -13  -3.88583   GACTAATACTTCTTA         CTCGCCCATCTG CAA CGGATGGGCGAA         TTTATACCCGCTTTC 100 35
SH05_RS13200 2655680 .. 2655692 +  -6.3    -2.567   TCACGCCCATTATGC                CGTTA CGT TAACG                CTTACTCATCTTCAT  53 15
SH05_RS13215 NONE
SH05_RS13220 NONE
SH05_RS13225 2660428 .. 2660445 + -14.1  -5.71712   ACTGTTGTACACTAC             CGGGGCC TTTT GGCCCCG              TTTTTTTATCTGGAG 100 42
SH05_RS13230 2660935 .. 2660986 +  -9.8   -3.1577   AATAAGTTATGAATT TAGCCAAAGCTATGTTTAGTGTATT TTT AATA-ATCAGACATAGCTTAGGCTA TATTACCTCTTCCCT  74 36
SH05_RS13235 NONE
SH05_RS13240 2662335 .. 2662356 +  -4.3  -4.43501   CACAAAAAGTGACCT           GCGGATAGCG TTT CGCCG-CCGC           TTTTATCGCTACCTT  67 441
SH05_RS13260 2663624 .. 2663641 +  -9.9  -2.65354   ACCCTAAAGAGAAGT             CAATCCC CAAA GGGATTG              TAAATTTAAAATAAG  71 225
SH05_RS13275 2664933 .. 2664963 +  -6.9  -3.29471   CTCATGCTAAATAAA       GAACCTGTCTG TTTGATATT CCGACAGGTTC       TTACTCTCATCAGAA  61 129
SH05_RS13285 2667320 .. 2667339 + -10.7    -4.946   CAGGGCATAAAAAAA            GCGCGTC GATCAG GACGCGC             TTTTTAGTATTTACT 100 31
SH05_RS13310 NONE
SH05_RS13315 2675816 .. 2675841 + -14.7   -3.9712   CCAAATAATGCCCAC         TGCTCCGGCGT GCCT GCGCCGGAGCG          TTTATGCTAAACTGC 100 33
        yebU 2677330 .. 2677346 +  -2.2  -2.63208   CGGTAACGCCTGACA              GCGC ACAAAAAAA GCGC              ACTTTTTGACTGGCA  40 28
SH05_RS13325 2677693 .. 2677709 +  -7.9  -4.12857   CTGATCCAAAAAGAA              CCCGTCG GCA TGGCGGG              TTATTTGTCCTGGTT  76 37
SH05_RS13330 2678227 .. 2678237 +  -2.4  -3.00298   AGCAATAACATGCTT                 GCCG GTG CGAC                 TGTGTACTTCAAGAA  42 275
SH05_RS13360 NONE
SH05_RS13365 2681769 .. 2681785 +  -2.1  -3.07233   TACGCTAGGCTTTTT              CGGCCTG GAG CATGCCA              TGTTGCGCATTATCG  43 33
SH05_RS13370 2682851 .. 2682872 +  -7.3  -3.45366   GTACCTGGGCGATAA           CGCCGTGGAA TAA TTCCG-GGCG           TTGATTAATTGCAAC  61 429
SH05_RS13385 2685882 .. 2685894 +  -4.7  -4.73613   TTGATCATCTGCCCA                ACGCG CCA CGCGA                TTTTGTTGATAATCA  75 365
SH05_RS13400 2687750 .. 2687770 + -15.5   -4.4267   AAAACGCTACAAAAA            TGCCCGATC CTC GATCGGGCA            TTTTGACTTTTACAG 100 51
SH05_RS13425 2693240 .. 2693252 +  -6.2  -4.08651   ATGAGATTAATTTAT                CGCC ATCGC GGCG                TTATTTCATTCGGAT  69 79
SH05_RS13430 2694864 .. 2694882 + -10.3  -5.68438   TATCATCAGGCGAAG             GCCTCTC CTCGC GAGAGGC             TTTTTTATTTGATGG 100 133
        znuC 2699062 .. 2699101 +  -3.6  -3.33815   CGAATTGTTTTGCGT  CGGGGAAATGATCGCTCA TGAT TGAATTATTATTTCCCGG   TTGGTTAGCCGGGAT  49 5
        znuB 2699872 .. 2699924 +  -8.4  -3.03443   CCAGCTAATCTATCG CTGAACACATTTGTCGGATGCGGCG CGAG CGCCTTATCCGACCTACG-GTTCGG TATCTCTGGTAGTCC  65 33
SH05_RS13470 2702654 .. 2702683 +  -7.1  -5.02074   TAGCGGGCAGTTTCA       GCAAGGTGCGG ACCATATG CTGCACCTGGC        TTTTTTCGGCACTGC  86 161
SH05_RS13495 NONE
SH05_RS13500 2707902 .. 2707912 +  -2.4  -3.04894   CCTATCATAGACAGG                 TGCC ATC GGCC                 ATTTTAAAGGGAGTT  42 49
SH05_RS13505 NONE
SH05_RS13510 NONE
SH05_RS13515 2710215 .. 2710232 + -14.1   -3.0976   GTTTGCATAACCTCA             GCGCCCG TTTC CGGGCGC              TATTCACGTCTTACG 100 162
SH05_RS13540 2717482 .. 2717507 +  -9.8  -5.46657   TTTCGTGAGAGTGAA         GCCTGATCAGG GTTAG CC-GATCAGGC         TTTTTTATTGCCATC 100 47
SH05_RS13545 2718486 .. 2718496 +  -6.8  -3.32844   ACCAGCGTCATCAAT                 CCTG AAG CAGG                 TTGTCGCGTAGAAAG  59 386
SH05_RS13625 2735121 .. 2735139 +  -8.8  -3.06483   TATCGCGCTGCTGGC             TTTCCGCG CTT CGCGGAAC             TATCTGCTTTAGGTC  68 76
SH05_RS13655 2742363 .. 2742390 + -11.3  -5.52986   GAAGGTTTTGAGAAA        CCGCTGCCTCA TCTGTT TGAAGCAGCGG         TTTTTTTAATGGGAT 100 71
SH05_RS13665 2743028 .. 2743040 +  -9.1  -3.64488   GATGGCAAGAAATAG                CGCCT GCC AGGCG                TCTTTTCCGGCCATT  75 148
SH05_RS13670 2743447 .. 2743462 +  -6.8  -2.71364   TAAATATTTTAATCA              GCGAGG GGAT CTTCGC               TGATTAAAGAAATAG  56 38
SH05_RS13675 2744110 .. 2744132 + -16.3  -3.61178   AAAACTAATGCTCTC           CGGCGGCAG GTTTA CTGCCGCCG           TTTCAAATCAGTGAC 100 33
SH05_RS13685 2745804 .. 2745833 +  -7.9  -3.67517   GCCTCAAATTCCTTA       TTGGGTGCCAG AATTAACG CTGACACCCAA        TTTGGCCTCTTAATG  70 48
SH05_RS13725 NONE
SH05_RS13730 2750939 .. 2750965 + -12.3  -4.70659   GTCAGTAATATAAAA         CCGGCTGATAG CGTGC CTTTCAGCCGG         TTTTTGCATCTGGCA 100 33
        fliD NONE
        fliS NONE
SH05_RS13785 NONE
SH05_RS13790 2762535 .. 2762560 + -11.2  -3.90291   AGAGGTGATTTAAAT         TCATCCCCGGC GGCAA GCCGGGGA-GA         TTTCATTACGGCAGT  88 28
SH05_RS13800 NONE
SH05_RS13805 2764607 .. 2764635 + -11.7  -2.83748   TCAGAAGTAATCCCT        CATTCCCGCTGTG ACC CACAGCGGGAACA        TCGTTACCTTTGTAT  81 31
SH05_RS13810 NONE
SH05_RS13815 2765973 .. 2766007 +  -3.5  -4.55295   AATTGCCATGAGCCA     GACGCAGCACATT CTTGCATTC GACGTGCTGCGCC     TTTATTTATCACCAG  65 30
SH05_RS13830 2767715 .. 2767729 +  -4.3  -4.88067   TAACGCCACGCCGGG               TTCAC CGAGA GTGAA               TTTTTCTGCCTGCGT  79 71
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ NONE
SH05_RS13865 2774378 .. 2774388 +  -3.2  -2.79831   GCGTGTAACAGGCAA                 CAGC GGC GTTG                 ATATTTTCGCCTAAC  43 1
        fliL NONE
        fliM NONE
        fliN 2776376 .. 2776386 +  -2.4  -3.22298   TCTGAGCGAATGCGC                 CGCC TGA GCCG                 TTAGTGATGAATAAC  43 11
SH05_RS13885 2776741 .. 2776762 +  -4.3  -3.17798   AAAAATTTGCTTAAG           CGTAGCGGG AGAT CCTGATGCG            TCGTTTATTGTCTGT  49 8
        fliP NONE
        fliQ NONE
        fliR 2778543 .. 2778564 +  -2.4   -2.7556   TTTGCTGGCTGATAT           TATTAGTG AATTGC CATTAATA            TAATTCCGTAACGTT  41 1
        rcsA 2779477 .. 2779522 +  -9.7  -2.61126   TTTTGTCAACATGCG CTAACACATTCTGACTGGTGG TTTC CCACCAGTCAGGCTGAATAAG ATTACTCTGCTTTCT  71 22
SH05_RS13915 2780330 .. 2780360 +    -4  -4.12188   TCAGCGGGATCGCTC       CCGAAAAAATCATC TTT GATAATTTGTGCGG       TTTTGAGAATCATCC  61 253
SH05_RS13920 2781569 .. 2781583 +  -3.5  -3.62096   CGCCTGATGACCAAA               GCGGT CATTA ATCGC               TTTAAAATGGTCAAG  53 379
SH05_RS13940 2785839 .. 2785862 +  -3.2  -4.07568   ACGCAACGCCACCGC          CTGTTTGA TTTTTGGC TCAAGCAG           TTTTGCCACCGCGGC  58 516
SH05_RS13970 2790176 .. 2790205 + -13.7   -5.4756   TAAAACTGAACACTA       GCCTGAGTTCG TCCCTCAT CGAACTCAGGC        TTTTTTATTGGCATT 100 69
SH05_RS13980 2791611 .. 2791643 + -10.6    -5.055   AAGCGCATAATCAAT     CGCGGCCGCGTTAGT ACTC AC-GACGTGGCTGCG      TTTTTTCACGGTTAA 100 61
SH05_RS13995 2794276 .. 2794287 +  -5.8  -2.73875   CATAAATATGTAAAA                GCAG ATCT CTGC                 TACTGTTAGGGAGGA  53 43
SH05_RS14000 NONE
SH05_RS14005 2796167 .. 2796181 +  -4.2  -2.84527   GATAAGTAGAACTGA               GAAAGC CAT GCTCTC               GTTTCCTAAGAGTTG  46 185
SH05_RS14010 2797005 .. 2797037 +   -13  -3.14602   TGAACGCAAGCTAGC     TACAGACACGCTCAT CACT ATGA-CGTGTCTGTA      TATTAATAAGCTAAC  95 116
SH05_RS14015 NONE
SH05_RS14020 2798037 .. 2798060 +    -6  -3.94773   TTATGGACTTTGTCC          CGCGGCT-TTA ATC TGACGGCCGCG          TTCCTTTTTTGACTC  66 10
SH05_RS14030 2799316 .. 2799327 +  -4.4  -3.29727   TGATACAGACTCGTT                TTCG GCGA CGAA                 TGTTCATTAATTAAC  51 4
SH05_RS14035 2799603 .. 2799629 + -15.9  -4.34402   TTTTAACATCTTAAG         CGCCCTCGACC TTTAT GGTTGAGGGCG         TTTTGCTATGAACGC 100 115
SH05_RS14040 2806926 .. 2806947 +  -8.7  -5.16572   TTATAATTTCTTAAA           GAGTGTTCC ATTC GGGGCACTC            TTTTTTACATTCCCT 100 48
SH05_RS14050 2809851 .. 2809882 +  -7.2  -2.70854   TCAACGCGCTTGATA      GCCTGGCGAAGATC ATCC GATCTTCGCCTTAC       ACTTTTGTTTCACAT  58 28
SH05_RS14055 2811460 .. 2811492 +  -9.9  -3.34013   TAAGTAAGACACCTG      GCAAATAGCCTGCAA TAA TCGTGGGCTGTTTGC      TTCCTTGGGCGGATA  76 81
SH05_RS14060 2812471 .. 2812505 + -13.9  -2.90382   ATCTCTAATTATCTT     TTAAAGAAATCTGTC TTTAC GGCAGATTTCTTTAA     TCTCATATAATTCTT 100 33
SH05_RS14075 2814828 .. 2814846 +  -5.9  -4.86133   CCAAATTCCTGAAAA             GCCCGCT TTTAT AGCGGGA             TTTTTGCTATATCTG  78 38
SH05_RS14090 2817236 .. 2817253 + -11.3  -5.05505   GCCAAATTCAAAAAA             GCCTGCT TTCT AGCAGGC              TTTTTGCTTTCTAAT 100 37
SH05_RS14140 NONE
SH05_RS14145 2826367 .. 2826394 + -17.8  -5.45652   TGTAACCCTTTACCT        GCCGGTATCCAC GTTT GTGGGTACCGGC         TTTTTTATTCACCCT 100 292
SH05_RS14150 2829552 .. 2829609 +    -7  -3.01791   TGACCTTCTGACAGA ACC-AT-CGCCTCTCTGTGGTCCCGGTCA TCA TGACCGGGACC-CGGACCGGCGCAACGGA TCTTCAACGCCACAT  58 30
SH05_RS14155 NONE
SH05_RS14160 NONE
SH05_RS14165 2831935 .. 2831949 +  -4.3  -3.30124   TGAACTGAGTGGGAA               TTCTG ATGAG CAGAA               TTATCGCCACTACCG  51 33
SH05_RS14170 2832394 .. 2832415 + -10.1  -2.55811   ATAGCCTTCTGCTAC           GGCCTGGTG TTTT CACCACGCC            ACTTTTCCATTTTTA  70 50
SH05_RS14175 NONE
SH05_RS14180 NONE
SH05_RS14185 2833180 .. 2833202 +  -9.9  -4.61873   CTTCATTTCTCCTGA          CGCCAGCCTG AATA CAG-CTGGCG           TTTTCATTTATAAAC 100 56
SH05_RS14190 2833882 .. 2833904 + -16.4  -3.05384   AGAATCAATGAGCAA           TGAGGGTTGC CGG GCAACCCTCA           TTGAATAAAACGGGA 100 87
        sbcB 2839195 .. 2839205 +  -6.8  -2.63991   GTCCTTCTTCTGCCG                 CCCA CTG TGGG                 ATTGCTTCAGTTGCC  52 148
        hisG NONE
        hisD NONE
SH05_RS14265 2848304 .. 2848316 +  -3.3  -3.76224   GTCATTGACGCCTTA                CGTGC GGA GCAAG                TTTGATGAGTCAGAA  53 8
SH05_RS14270 NONE
        hisH NONE
SH05_RS14280 NONE
SH05_RS14285 NONE
SH05_RS14290 2852128 .. 2852151 + -12.4  -5.27335   ATCCGGCAAAAAAAC          GGGCAAGGTG TCAC CACCCTGCCC           TTTTTCTTTAAAACC 100 75
SH05_RS14475 2894563 .. 2894577 +  -7.1  -3.30124   ACGAACGCCTGATGC               GACGC TTTAC GCGTC               TTATCAGGCCTACAG  64 251
SH05_RS14495 2901461 .. 2901474 +  -8.1   -3.4252   CCCATCGCCTGATGC               GACGC TAAC GCGTC                TTATCATGCCTACAA  68 51
SH05_RS14510 2903886 .. 2903926 +  -3.2   -4.9218   TTCGTTAATTGAAAA ATGGCTCAGCAGC-GGC TTAAATCT GCCTGCGCCTGAGCCAG  TTTTTCTGCTGCCTG  71 33
SH05_RS14520 NONE
SH05_RS14535 2910111 .. 2910121 +  -6.8  -3.01712   AAAAAGGAGCACGCT                 CCTG ATG CAGG                 TGTTACCCCCGAGCA  58 21
SH05_RS14540 NONE
SH05_RS14545 NONE
SH05_RS14550 NONE
SH05_RS14555 NONE
SH05_RS14560 2919990 .. 2920007 +  -5.5  -4.18197   ACTTTAATCGGTAAA             CAGCACC TTTA GATGCTG              TTTTCGATACACAAT  65 165
SH05_RS14565 2920399 .. 2920409 +  -4.6  -3.53012   GGGCGTGGGTTGTTG                 GCGT CCG GCGC                 TTTACCAGAGCCCCC  55 51
SH05_RS14570 2922018 .. 2922043 +  -9.8  -4.62085   GGAACCACCTCCTTA         GCCTGTGTAA TCTCCC TTACACGGGC          TTATTTTTTACGCGT 100 162
SH05_RS14590 2924511 .. 2924522 +  -5.8  -3.30124   CGTAATGCCGGATGC                GGTG TAAA CACC                 TTATCCGGCATACAG  57 73
SH05_RS14600 NONE
SH05_RS14605 2926656 .. 2926681 + -12.6  -2.72511   CTGTTTTGCACAATA         C-CGGGCCAGC ATCAC GCTGGCCCGCG         GTTTCAGGGAATGAG  88 431
SH05_RS14650 NONE
SH05_RS14655 NONE
SH05_RS14660 2936948 .. 2936992 + -15.8  -3.79993   GCTGTACTCAATAGG CCGTTGCTGTTGGTCAAGCG CCACT TGCTTGATCACCAGCACCGG TATTTTGCTATCTAA 100 62
SH05_RS14690 2941674 .. 2941692 +  -7.4  -4.08919   CTCTCTGCTCGCTAA             GGATGCTT TTA GGGCATCC             TTTCATTTACACTTT  73 108
SH05_RS14695 2942612 .. 2942628 +  -5.1  -3.28791   TTTATTGTTGCTTTG              TTACCTG TGG CTGGTAA              TTGTGAAACGGGAAT  54 489
SH05_RS14720 2947457 .. 2947472 +  -3.2  -2.65388   CGGGCGAAGAAAACA              GATGAC GGGT GTCAAC               ATTATACGTTAACTG  42 41
        metG 2951195 .. 2951214 + -10.7  -5.01553   ATAATCCCCCTTCAA            GGCGCTG CATCGA CAGCGCC             TTTTCTTTATAAATT 100 37
SH05_RS14740 2952625 .. 2952659 +  -3.5  -3.61398   GAAAGCCATTGCTGC    GTTCCCACA-TGCAGC AATG GCGGCACTGACGGAAC     TTCTTGGGCAAAAAG  53 502
SH05_RS14745 NONE
SH05_RS14750 2958769 .. 2958790 + -11.6  -3.29043   TCCATTAAAACACAG           CGGGCAGT GATGCA ACTGCCCG            TTATCAACACGACTT  86 33
SH05_RS14755 2959298 .. 2959340 +   -16  -2.90725   TTAGGCCTGAAAATA GTAAATAAAAGAACCTGC CTCACCA GCAGGTTTTTTTATTTAC TGTGATCTGCTTTCC 100 184
SH05_RS14760 NONE
SH05_RS14765 NONE
SH05_RS14770 2963943 .. 2963954 +    -3  -3.07816   GGCTTGCGGAGAATC                TTCA GTCA TGAA                 TTCACTACGTCCGGA  46 15
SH05_RS14775 2966029 .. 2966045 + -10.9  -3.46081   TATCCTATATAGCCC              CTGGTGA GAG TCACCAG              TTCCTTGATTAAATA  83 260
SH05_RS14780 2966541 .. 2966571 +   -17  -5.16472   AAGTGAAATAATCGG       TTGGCGGTCATGCT CTA AACATGACCGCCAA       TTTTTTAGCCTTTTT 100 30
SH05_RS14800 NONE
SH05_RS14805 2970968 .. 2970978 +  -6.8  -2.70932   CCGTAAAGGATCAAG                 GCGA TAA TCGC                 TGGTTGCAGACCAAA  53 379
SH05_RS14835 2978816 .. 2978832 + -10.8   -5.8096   GCCGTCTGCCCCGCC              GCCGCC ATTTG GGCGGC              TTTTTGTTTTTTATA 100 91
SH05_RS14850 2981292 .. 2981305 +  -8.1  -4.25104   TACCATGCCTGATAC               GACGC TTGT GCGTC                TTTTCATGCCGACCA  79 88
SH05_RS14865 2984182 .. 2984210 +  -7.3  -3.04398   CACATCCATGTGGGC        TGCCCCGGCCTTC AGG GAACGCCTCGGCA        ATTTTGACGCCACCA  61 292
SH05_RS14875 NONE
SH05_RS14880 2986574 .. 2986584 +  -6.8  -4.87037   GGCTAAAATTTGCGA                 TGCG TCG CGCA                 TTTTTGATGTATGTT  82 35
SH05_RS14885 2987646 .. 2987662 + -10.9  -4.15044   TGGTGTCGAAATTCC              CGGCAAA CAG TTTGCCG              TTTCTTGCGCAAAAC  93 93
SH05_RS14890 NONE
SH05_RS14895 2988741 .. 2988769 +    -6  -3.58242   TACTTCACCTGATAA        GCTGCGGATA TCACATTCC TAACCGCAGC        TATTTGTGAATCTTT  61 77
SH05_RS14900 NONE
SH05_RS14905 2991454 .. 2991485 +   -13  -2.82482   TTGAGCTTATTGTAG      GCCGGATAAAACGC GCCA GCGTTGCATCCGGC       ATTTGGCTCCTGTTG  91 129
SH05_RS14935 2997829 .. 2997860 +  -5.8  -3.21099   AGCGATACGCCCAGT      CC-AGCTGCCATTGC AGG GCGATGGCAGGAAGG      TTAATGGTCACCCCA  55 366
SH05_RS14950 NONE
SH05_RS14955 3000380 .. 3000395 + -11.8  -2.56271   CTGAAGTGAAAGTCC              GCCCGG TTCG CCGGGC               ATCTTCTCATCAGAA  81 32
SH05_RS14975 NONE
SH05_RS14980 NONE
SH05_RS14985 3008432 .. 3008446 +  -7.1  -3.30124   AATGTTGCCGGATGC               GACGC TTAAC GCGTC               TTATCCGGCCTACAA  64 42
SH05_RS15000 3011659 .. 3011678 +  -4.3  -3.28857   ATTATTTTCAATAGC            GCGATTGC CGGAT GCAA-CGC            TTAATACGTTTTATC  51 43
SH05_RS15035 3021023 .. 3021042 +    -5  -3.97443   TGCCCGAAAGGCCCG            TCGCGA GTACTTTG TCGCGA             TATTTTTGACATTTT  61 377
SH05_RS15045 3021670 .. 3021689 +   -10  -5.46129   GCCGCATGCAGAAAA            GGGATAGC TCAG GCTGTCCC             TTTTTTAATTTATTA 100 46
SH05_RS15050 3023349 .. 3023387 +  -8.1  -4.03183   TTTAACGATTTCTGC   GGTTAAAGCGGATGAAG CTCAC CTTCGTCCGCTCTCCCC   TTCTCTTTTCTGCCT  74 36
SH05_RS15055 NONE
SH05_RS15060 3025543 .. 3025554 +  -2.2  -5.61596   AGGTAATTAGTCTCG                TGTC GCTT GGCA                 TTTTTTTATAACGAT  82 374
         spr 3026222 .. 3026239 + -11.3  -5.85244   ACGAGTTAACTGAAA             GCACTGC TTAG GCAGTGC              TTTTTTGTTTTCATT 100 75
SH05_RS15070 NONE
SH05_RS15075 NONE
SH05_RS15080 NONE
SH05_RS15085 NONE
SH05_RS15090 3033596 .. 3033607 +  -2.2  -3.53012   CATGTTGCAGCAAAC                TCGT CCTG GCGA                 TTTACAAACAGGCAC  47 105
SH05_RS15110 3038097 .. 3038122 +  -7.5  -2.70525   AAAGCAGATCACTTA         CCTGTTGCTGG GTCG CCTGTAGCAGG          ATTAATTTAAGAGAG  58 103
SH05_RS15115 3038444 .. 3038473 + -15.9  -2.90219   TTGCTGAATAAGTTG       TAAAAAACCCCGC TCCG GCGGGGTTTTTTG        TATCTGCAGATTATG 100 41
SH05_RS15125 NONE
SH05_RS15130 3041751 .. 3041787 + -12.5  -3.18634   AGACGAGAAGCGTTT    TATCGCTAACTGATTAA TTA TAAATCAGTTAGCGAAA    TATCTTACTTGCAAT  93 13
SH05_RS15135 3041932 .. 3041948 +    -8  -5.76633   AATCCCAAGAAAAAA              CCAACC CTTAC GGTTGG              TTTTTTTATATCTGC 100 43
SH05_RS15155 3046955 .. 3046979 + -11.4  -4.29436   CTTTGTCAACAGTCT          AGCCCGATGG CATCA CCATCGGGCC          TCTTTTTATTTACTC 100 206
SH05_RS15235 NONE
SH05_RS15240 3060107 .. 3060120 +  -8.1  -3.30124   CCGGTTGCCTGATGC               GACGC TGGC GCGTC                TTATCAGGCCTACAC  66 112
SH05_RS15285 NONE
SH05_RS15290 3072464 .. 3072497 + -14.7  -3.55622   GACTAATCACCTGTA     GGCCAGATAAGACGC GTTA GTGTCTTATCTGGCA      TTTGCACCGATTGCC 100 35
SH05_RS15300 NONE
SH05_RS15305 3078887 .. 3078933 + -10.2  -2.90904   TGTATAACACCAAAA CTTGCTATGCAGAAATTTGCAC AGT GCGCAATTTTCTGCATAGCCGC TCATTCTCCTTATAA  76 34
SH05_RS15310 NONE
SH05_RS15315 NONE
SH05_RS15320 NONE
SH05_RS15325 3082931 .. 3082956 + -14.1  -4.64676   ATTAATCAATAAAAA         CACCCGATAGC GAAA GTTATCGGGTG          TTTTCTTGAACATCG 100 36
SH05_RS15365 3095960 .. 3096004 + -12.3  -3.53811   ATGCGACGCTTGCCG CGTCTTATCAGGCCTAC AAATGCTCCCC GTAGGCCGGATAAGGCG TTTACGCCGCATCCG 100 69
SH05_RS15375 3100427 .. 3100439 +  -3.3  -2.64616   TGTTCTAAGCAGCTT                CCCGT ACT ACAGG                TAGTCTGCATGAAAC  42 41
SH05_RS15380 3102898 .. 3102915 +  -7.7  -3.88291   AGCGTGAACGCCTTA             TCCG-GCC TAC GGCTCGGA             TTTGTAGGCCTGATA  72 146
SH05_RS15385 NONE
SH05_RS15390 3104398 .. 3104448 + -13.5  -3.07113   AATCGAGATGTGAAT TGGTTGTAGTGCCAGATACAACGC TTAT GCGTCTTATCTGGC-CTACAACGA TTACATGGCGTAGTA 100 28
SH05_RS15400 3105948 .. 3105979 +    -3  -3.73534   TCAGCTGTACCAGAT      TGAGCTCCATGCCCA TTT TGGGT-TCCAGCTCA      TTCTTAATACGCTTC  53 453
        glpA NONE
SH05_RS15420 NONE
        glpC 3112351 .. 3112378 + -14.2  -4.65895   TAAACTCCTTTCTGA        TGCCCGGTAAGC ATGT GGTTACCGGGCA         TTTTTGCGTACACGA 100 38
SH05_RS15430 3113423 .. 3113447 +    -3  -3.13522   CTGATATTCCGAACT          GTCATTAA AAGGAGAGA TTAATGAC          TATTGCTGAACGGCT  46 18
SH05_RS15435 3113637 .. 3113661 +  -2.7  -3.84825   CCACTAATTAACACA          GGCCCACAG CCGATCC CCATGGGCC          TTTGATATCAATAAC  52 34
SH05_RS15470 3121092 .. 3121113 +  -3.7  -4.79352   ACGACAACCGGGTGC           TGCTGTGCCA GTC TGGC-CAGTG           TTTTATTGTCGATAC  73 512
SH05_RS15480 NONE
SH05_RS15485 NONE
SH05_RS15490 NONE
SH05_RS15495 3126531 .. 3126543 +  -4.1  -2.57985   AATTGCGGGTAGTCG                CTGAT GAA ATCGG                TACGTTACCTTATCG  45 22
        arnT NONE
SH05_RS15505 NONE
SH05_RS15510 3129047 .. 3129072 +  -6.1  -2.58667   AATCCCCCACTTTCA         CGGCGAAGTCA CTCT TCACTTCGGCG          ATCATTTTTATCGCG  50 168
SH05_RS15560 3138171 .. 3138189 +   -11  -3.28712   GCTTATTATTAAAAA             CAGGGCGA AAC TTGCCCTG             TTATCGCAACCCGCG  81 45
SH05_RS15565 3139563 .. 3139605 + -13.7  -3.73224   TAACATCATTGTTAA TTA-ATTCGACCAGTCAGCA AATA TGCTGACTGGTCGAACATAG TTTGCTAAACAGTCA 100 38
SH05_RS15575 NONE
SH05_RS15580 NONE
SH05_RS15590 NONE
SH05_RS15595 3145631 .. 3145649 + -11.7    -2.981   TCTTTTTCAGAAAAA             CCGCCGA GCATG TCGGCGG             CTTTCTGACTTACAA  83 66
SH05_RS15670 3164414 .. 3164440 +  -9.4  -3.28791   CTGTAATCTTAATTT         CACTGCCGGA GATTGCA TCCGGCAGCG         TTATCCCGCCACAAT  74 35
SH05_RS15675 3165095 .. 3165142 + -12.8  -3.28712   CGCTGTAAGCAGCCG GAGTCTG-CGTCGCATCAGGC AATAAGC GCCGGATGCGACATCAGGCTC TTGTCAAAACGGAAA 100 33
SH05_RS15705 3170302 .. 3170329 + -16.4  -4.36914   CTGACTGCCTGATTT        CA-CACCGCCAGC TCA GCTGGCGGTGCTG        TTTTGTAACCCGCCA 100 29
SH05_RS15710 3172558 .. 3172580 + -10.7  -5.64304   CTGCGGATATCTGAA           CCGGAAATA ATCAC TATTTCCGG           TTTTTTATTCTCTTA 100 66
SH05_RS15715 3174237 .. 3174254 + -12.7  -5.32944   CACTAAAAATGTTAA             GAGCCGC AATT GCGGCTC              TTTTTTCATTCTGCC 100 35
SH05_RS15735 NONE
        folX NONE
SH05_RS15745 3178497 .. 3178510 +  -3.7  -3.98214   AAATGCACGAAAACG               CTGGG CATC CCCTG                TTTGTAATACGTAAT  58 295
         flk 3194689 .. 3194701 +  -4.7  -2.78384   GCCAGCGGCCCGGAG                ACGCC GAG GGCGA                TATCCTGAAACGCGG  46 143
        mnmC 3199424 .. 3199435 +  -7.2  -3.30243   GTGTTTGCCGGATGC                GGCG TGAA CGCC                 TTATCCGACCTACGT  64 53
SH05_RS15880 3204817 .. 3204838 + -17.3  -2.72799   CCAGGTACGGGTAAT           GGCAGGGGC GAAT GCCCCTGCC            TGGTGTATCTAAGGG 100 59
SH05_RS15940 3218294 .. 3218314 + -15.5  -3.64822   GTTCGCCTGGATAAA            GTCACCTGC ATA GCAGGTGAC            TTTAACTCCCCCACT 100 47
SH05_RS15945 3219843 .. 3219862 +  -8.6  -5.85425   GATAACAACAAAAAA            GGTGAGTT TTGC GACTCACC             TTTTTTATTTGTTTC 100 172
SH05_RS15955 3221899 .. 3221917 +  -4.5  -2.82516   CGGCAGCGTACTTAC             CCCGC ACTCCATTA GCGGG             TATACTCATGCCGCA  49 65
SH05_RS15960 NONE
SH05_RS15965 3223353 .. 3223386 +    -9  -3.01857   ACAACTATCGAATAG     CACAAAGTCTTGCA ATCCAG TGCAAAGCTTTGTG      TGTATAAGTTTTGTC  68 50
SH05_RS15970 NONE
SH05_RS15975 NONE
SH05_RS15980 3226283 .. 3226297 +  -4.2  -2.56271   ACAACAAACCCCCTC               CAGAAC CAA GTGCTG               ATATTATCATCAACA  45 220
SH05_RS15985 3227087 .. 3227114 +  -8.6  -3.96148   AGCTTGCGTGTAATC        CTCTTTC-ATCTC CAA GGGATAGAAAGAG        TTTGTAGTCGCGGAA  74 381
SH05_RS16020 3229603 .. 3229616 +  -2.5   -4.0942   CATTAATATCATTCT               TAATT AACT AATTA                TTTATCTCATCACTG  57 35
SH05_RS16025 3230499 .. 3230514 + -10.4  -3.86346   TTTCATTACTGCAAA              TGCCCC TGCG GGGGCA               TTTATGGAAACGTAA  86 41
SH05_RS16030 NONE
SH05_RS16035 NONE
SH05_RS16040 3231896 .. 3231908 +  -4.8  -3.20878   AGCGTATTTTTATTA                CCTG ATTTG CAGG                TTCGATTCCCTATTC  51 116
SH05_RS16045 3232298 .. 3232311 +  -2.3  -4.81852   GCCGAATAAGGCACA               CCAGG AACT CGTGG                TTTTATTCATTATGA  66 186
SH05_RS16055 NONE
SH05_RS16060 3236152 .. 3236162 +  -5.4  -3.53224   TATCTGGCAAAAGGC                 CGTT AAT AACG                 TTTCAACGCAGCATC  57 20
SH05_RS16075 3240033 .. 3240055 +  -4.2  -2.71712   TATTTTTCTTCTCTG           TTGTGGTC TTTGGTC GACCATAA           GTTTCGCAGACGAAG  45 62
SH05_RS16080 3243601 .. 3243627 + -10.9  -3.34517   AATGACTAAATAGCG         GCTCCCACAAT GTTCA AATGTGGGAGC         TATTTACCAGCACAT  81 32
SH05_RS16110 NONE
SH05_RS16125 3252226 .. 3252253 + -11.4   -5.4756   TCCCTCCTCAAATCG        GCCATAATAACC TCAT GGTTTTTATGGC         TTTTTTCTTAAGGTT 100 59
SH05_RS16135 NONE
SH05_RS16140 NONE
SH05_RS16145 3257618 .. 3257633 +  -3.3  -3.53444   TTTCAGGGCTAACGT              CAGAA GGTTAA TTCTG               TTTCCAGCAGCGTCA  49 29
SH05_RS16180 3266558 .. 3266575 +  -5.5  -2.77791   GTTATGGCGATGATA             CGGGG CTTTACCT CCCCG              TAATATTGCGTTAAC  50 70
SH05_RS16185 NONE
SH05_RS16190 3267292 .. 3267302 +  -6.8  -2.79796   GACTCATAACCAGAA                 TCCG TGT CGGA                 TCTAATCCCATCAGA  53 281
SH05_RS16200 3269901 .. 3269922 +  -4.4  -3.52073   AAGCCGGGGATAATT           CCCATAAG CGCTAA CTTAAGGG            TTGTGGTATTACGCC  52 55
SH05_RS16205 3271094 .. 3271120 +    -8  -3.14683   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  63 49
SH05_RS16225 NONE
SH05_RS16230 3274841 .. 3274863 +   -12  -4.55887   AGCATAAATAAAAAA           CGGCAGGATA TTA TCTCCTGCCG           TTTATCTTTTTACAC 100 34
SH05_RS16240 NONE
SH05_RS16245 NONE
SH05_RS16250 NONE
SH05_RS16255 3276958 .. 3276988 + -17.1  -2.90212   GCACGACCCACCAAT       GTAAAAAAGCGCC CTAAA GGCGCTTTTTTAC       TATCTGCGATACTCA 100 28
SH05_RS16280 3281524 .. 3281546 + -17.8  -2.56571   TAACTTCTGATTGAT           TACTGCCGGG GCT CCCGGCAGTA           TGAATTCACTCTATA 100 31
SH05_RS16290 3283582 .. 3283614 +  -2.8  -4.25104   CTTAAAGCGGACGCT     TC-AGGGGCTGGAC CAGTTGC GTC-AGCCCCTCGG     TTTTAATCAGCAGCG  59 36
SH05_RS16310 3287891 .. 3287910 + -12.8   -3.7347   CGTTTGTGTGAAACA            GGGGTGGC TTAT GCCGCCCC             TTATTCCATCTTGCA 100 65
SH05_RS16315 3289036 .. 3289051 +    -9  -5.26316   AAAATGCGTAAAAAA              GCACCT TTTT AGGTGC               TTTTTTGTGGCCTGC 100 54
SH05_RS16320 3289637 .. 3289660 +  -4.5  -4.11692   GTTAAACTGATGGCG          GAACTCGAG TAATTT CCCGGGTTC           TTTTAAAAATCAGTC  63 14
SH05_RS16325 NONE
SH05_RS16330 3291990 .. 3292007 + -12.7  -5.71983   TGCCGCAGTGAAAAA             TGGCGCC CATC GGCGCCA              TTTTTTTATGCTTCC 100 45
SH05_RS16340 3293329 .. 3293348 +  -2.1   -3.5394   GATAAAACGGTGCCT            GCGGA AGGAAATTAA TCCGC             TTTGGGAAGGCATTT  47 11
SH05_RS16345 3294147 .. 3294205 +  -8.9  -2.78868   ACAACTGTTAAAAAA GTGCGCTTTGTTTATGCCGGATGCGGCG TAAA CGCCTTATCCGGCCTACA-AAATCGTGC TAATTCAATATATTG  67 62
SH05_RS16385 NONE
        murP NONE
SH05_RS16395 3305222 .. 3305249 + -14.2    -3.767   TGGTCAACAATCTGA        GGCCAGTCAGTA ATGT TACTGCCTGGCC         TTTAATCAATGAATC 100 214
SH05_RS16420 NONE
SH05_RS16425 3310238 .. 3310272 +  -7.1  -4.02456   TTCTCGCAAAACGTC    GCCAGCGCCTGTTGGAC AAA GCCCCACAG-CGC-GGC    TTTATGCTGCTCTTT  70 512
SH05_RS16520 NONE
SH05_RS16525 3330489 .. 3330540 + -15.8  -3.30243   TGATGGTGATTGCCG GATGCTGATTGCCGGATGCGACGC TGAC GCGTCTTATCCGGCCTACAGCGTC TTATCCGGCCTACAT 100 38
SH05_RS16545 NONE
SH05_RS16550 3339557 .. 3339578 +  -8.7  -4.70879   ATAAGCAATAAAAAA           GGCGACATG CCAA TGTGTCGCC            TTTTTCAACTTTCCG 100 37
SH05_RS16555 3339946 .. 3339959 +  -2.5  -3.60925   TTCTTAATGTTTACG               TTAAA AATG TTTAA                TATTATTTAATAGTT  50 160
SH05_RS16560 NONE
SH05_RS16565 3341560 .. 3341575 +  -5.4  -2.82623   CGTATCATGGAACAG              CTCGTC GCCT GATGAG               TGGTTCTGCAAGAGG  50 14
SH05_RS16570 3341829 .. 3341881 + -12.6  -2.52623   CGTAGGCCGGATAAG GCGTTAACGCCGCATCCGGCAATG GTGAA CGATGCCTGATGCGACGCTCACGC GTCTTATCAGGCCAG  86 55
SH05_RS16595 3346842 .. 3346860 +   -11  -3.41878   GCCCAGTTCCTGCCA             GTCGCTGT CAG ACAGCGGC             TTATAAGTTACGGCC  83 110
        gcvR NONE
         bcp 3349841 .. 3349854 +  -5.3  -2.68088   CATACCTCACTTCTC               GTGAT CAAG ATCAC                ATTCTCGCTTTCCCC  49 81
SH05_RS16620 NONE
SH05_RS16625 NONE
        hycD 3353613 .. 3353624 +  -3.6  -2.87211   GCTTGCATGGGTCTT                CTGG TTAA CCGG                 TCTGTAAGGAGCACT  45 7
SH05_RS16635 NONE
        hyfE NONE
SH05_RS16645 NONE
SH05_RS16650 NONE
SH05_RS16655 NONE
SH05_RS16660 NONE
SH05_RS16665 3360705 .. 3360720 +  -6.2  -3.15427   GCCAGAAAAATTGCG              TGAGAA GGAT TTCTCA               TTAATAAGGACTGTT  57 23
SH05_RS16670 3362727 .. 3362741 +  -3.5  -3.31766   TGCAGCGGCTGGGGA               TCTCG GTTCG CGAGG               TGTTGTAATCTGCTT  49 3
SH05_RS16675 3363622 .. 3363655 + -11.7  -2.96444   TCAGGAACCCTGAAA     AATCAGCCCGGCGAA ACAG TTCGTCGGGCTGAAG      ATTATTCTTGCGCGA  83 28
SH05_RS16685 NONE
SH05_RS16690 3367192 .. 3367225 +  -3.7  -4.11484   CCCAGATTCAACTGC     CGCGGTGGACGATCG CCGG TGATCAACAACCGTG      TTTTGCCCGATTCCA  60 443
SH05_RS16710 NONE
        purN 3371727 .. 3371746 + -10.7  -4.74504   CCCCCGTAATTAAAG            CGCCAGC TCTGCC GCTGGCG             TTTTTCAATTCACCT 100 43
SH05_RS16720 NONE
SH05_RS16725 3375499 .. 3375527 + -18.2   -3.6279   CGCCGCTTAATACTT        TGCGGGCCGACG AGAAA TGTCGGCCCGCA        TTATTCAGGCACTTT 100 31
SH05_RS16740 3378372 .. 3378401 +  -2.1  -3.63045   TCGCTGTCGGATGCT       TTTGCTGTTTGGG ATTA TCAAAGCGGCAGA        TATTCTTTCATCTTA  49 79
SH05_RS16745 NONE
SH05_RS16750 3379742 .. 3379771 + -12.3  -3.41693   TAATTCTTGAAGATA       AAAAACCCTCTGT AGTA ACAGAGGGTTTTG        TTCATTCATAGTGCA 100 65
        xseA 3384480 .. 3384516 +  -5.8  -4.09685   TCGATATCAAGCCAT   GCCCGTGCTGACAGAAG TAAT CTACTG-CACCACAGGC    TTTTAACACCTGCAA  68 66
        sseA 3402185 .. 3402228 + -18.4  -2.90194   GAAATAAGTATTTTA CAGGCAATAAAAAACCGCCG AATT TGGCGGTTTTTTATTGCTAG TCTGGTTCGCGGCCT 100 34
SH05_RS16885 3413067 .. 3413078 +  -5.8  -3.18264   TGACGAGTTAAGCGA                CGCT CTGA AGCG                 TTAATGACTCAGGCG  55 10
SH05_RS16890 NONE
SH05_RS16895 3415808 .. 3415824 +  -7.9  -3.17212   TTGCACCACTATCAA              CCACGGC AAC GCCGTAG              TTGCTCCCATAATGC  61 281
SH05_RS16910 NONE
SH05_RS16915 NONE
SH05_RS16920 NONE
SH05_RS16925 NONE
SH05_RS16930 NONE
SH05_RS16935 3422612 .. 3422643 + -16.6    -3.794   CGGCGTTAGGAAAGA      TGCCGGATGCGGCG TGAA CGCCTTATCCGGCA       TTTAATAAATTACAG 100 32
SH05_RS16970 3432913 .. 3432930 + -11.3  -3.23216   GCGATAACGTAGAAA             GGCTTCC CGAA GGAAGCC              TTGATGATCATAAAC  84 45
SH05_RS16980 3435898 .. 3435922 +  -7.1  -2.74192   ACATCCGGCAACCCT          TGACGCGGT TTAAATT GCCGCGTCG          TCCTCTTCACCGGTA  59 61
SH05_RS17010 3446208 .. 3446223 +  -3.2  -4.10552   AATCCGTCGAGGATT              GCGC TTTTTTCT GCGC               TTTAATTTCCTGGCG  58 39
SH05_RS17025 NONE
SH05_RS17030 3448905 .. 3448934 + -12.9  -3.11999   TTTATAGTTATTAAA       GGTGCGTCCGACTG GTT CAC-CGGACGCACC       TTAAGTACGTTTCCT  95 170
SH05_RS17045 3449394 .. 3449430 + -10.9  -4.56597   AATTAAAGTTAAAAA    GTAAAACCCCCGTTC CTTACCA GTTCGGGGGTTTTAC    TTTTTAAAGAGAACG 100 71
SH05_RS17110 3460991 .. 3461011 +  -3.9  -4.08216   AATGCCAGCAGCACC            CGATGCG GCAGTCG CGCTTCG            TTTTCCGCCACATCC  60 137
SH05_RS17120 NONE
SH05_RS17125 3463247 .. 3463272 +  -3.2  -4.82901   CTTTGTCGACAAGTT         AAATGCCGGG TTTAAT CCCGACATTA          TTTTTATCCAGCCAC  68 47
SH05_RS17135 3464857 .. 3464880 + -16.8  -3.22884   TATTAACGAAAAAAA          GCGGAAGAGG TCGC CCTCTTCCGC           TTAGTAACTTGCTAC 100 35
SH05_RS17145 3466295 .. 3466320 + -14.7   -3.0169   AATTTGCGGGGAAAT         GCCGGATGGCA GAGT TGCCACCCGGC          TGATTTATCAGGCTT 100 40
SH05_RS17160 3467998 .. 3468018 + -14.7  -4.50976   TCTCTTTAATCTTAC            CGGGGCGCA TCT TGTGCCCCG            TTTTCTCCTCTGCGA 100 32
SH05_RS17165 NONE
SH05_RS17170 NONE
        pssA 3472926 .. 3472942 +  -9.4  -5.04249   ATCCTGTAATCACAA              CCCCGT CCTGT ACGGGG              TTTGTTTTTTGGAGG 100 32
SH05_RS17180 3473503 .. 3473517 +  -4.3  -3.32022   GGAACATCTCAGCCT               TCAGT ATTCC ACTGA               TTGATGTATAAAAAC  51 240
SH05_RS17230 3485741 .. 3485760 + -10.7   -5.9218   ACCTGAAACACAAAA            CGGCAGC CCTTGA GCTGCCG             TTTTTTTATTCTGTC 100 46
SH05_RS17235 NONE
SH05_RS17240 3486358 .. 3486373 + -11.8   -5.4505   TGAGTGTATCGCCAA              CGCGCC TTCG GGCGCG               TTTTTTGTTGACAGC 100 51
        pheA 3487750 .. 3487777 + -18.6  -2.67428   CAACCTGATGAAAAG        GTGCCGGATGAT GTGA ATCATCCGGCAC         TGGATTATTACTGGC 100 33
SH05_RS17260 NONE
SH05_RS17265 NONE
SH05_RS17270 NONE
SH05_RS17275 3492968 .. 3492989 +  -7.1  -3.62224   CAAACAGATAAAAAA           GGGCCAGCC AATT GGCCAGCCC            TTCTTAACAGGATGT  68 49
SH05_RS17305 3497648 .. 3497665 +  -2.7  -3.64192   CGTTGATCATTATTC             TGATCAT CATG GTGGTCA              TTTCAGCCTATTTTT  50 83
SH05_RS17310 3498904 .. 3498929 + -14.7   -2.6563   GCGGAGTAACGAAAA         CGGCCCGGCAT TCGC ATGCAGGGCCG          TGAATTATTACGAAA 100 32
        ppnK 3500586 .. 3500605 +  -2.2  -2.56601   TATAAAACCAGTTTA            TACTGT ACACAATA ACAGTA             ATGGTTTTTCATACA  39 65
SH05_RS17330 NONE
SH05_RS17335 3502803 .. 3502842 + -12.4  -3.70444   AAAGTTGCTCTCAAA  GACGTTAAAAAAGGTGCTC AAT GAGCACCTTTTTTC-TGTC  TGTTATTTATTCGCT 100 45
        smpB 3504408 .. 3504419 +  -4.4  -3.60792   GGCGCTCATAAATCT                GGTA TACT TACC                 TTTACACATTGGGGC  54 218
SH05_RS17355 3506244 .. 3506269 + -16.3  -3.86897   GTCGGATAAAATATT         TATCAGCCCAG CTCT CTGGGCTGATA          TTTCTAAAAGATCGC 100 32
SH05_RS17365 3507745 .. 3507775 +  -3.3  -2.66695   GGAGTGTAAACATCC      TGCTATTTCCGCCA TTAA TAGCGGAA-TAGCC       ATATTTGCTAAACAA  42 77
SH05_RS17370 3509301 .. 3509317 +  -3.7   -2.7035   CAGTTCGGATAAAAG              CTTGTCA TCT TGATAGG              TAATATATAGGTACA  44 95
SH05_RS17375 3510448 .. 3510469 + -10.9  -3.67296   CGACTTTGCTGCGTA           TACCACGCT TTAC AGCGTGGTG            TTTAACTACATCCTC  81 463
SH05_RS17395 NONE
SH05_RS17400 3516494 .. 3516517 + -16.8  -5.56372   GAACAATCCGATGAA          CGGCAGAACC TCGC GGTTCTGCCG           TTTTTGTTTTACTTT 100 327
SH05_RS17405 3517440 .. 3517463 +   -16  -4.88895   CCTATTATTCTCCGA          GCCCTGTCGC AAGT GCGGCAGGGC           TTTCTTTATTTGTTT 100 55
SH05_RS17410 3518437 .. 3518460 +  -4.6  -2.61582   TTACATCTGGCTTTT          GCAGAAATAA AAAA TAGTTTCTGC           GTTGTCCATACCCTG  48 139
SH05_RS17415 NONE
SH05_RS17420 NONE
SH05_RS17425 NONE
SH05_RS17430 3520478 .. 3520504 +  -8.6   -5.1471   TTCCCTACCATAACA         ACCCTGATTGCC TCC GGCGGTCGGGGG         TTTCTTTTTTCTCCT 100 51
SH05_RS17445 3523866 .. 3523881 + -10.4  -4.92363   TCTTGTAACGCATTT              GGCTCC AATT GGAGCC               TTTTTATGACTATTT 100 33
SH05_RS17450 3525189 .. 3525202 +  -5.2  -2.88366   AGCACCCTGAATCCA               GCGC CATTAT GCGC                ATTATTGATTAAGGA  50 0
SH05_RS17455 3525685 .. 3525700 +  -4.7   -3.6707   CAAATCTATTCGTTC              GCAGA ACACGG TCTGC               TTTGAGGTATTACAT  57 5
SH05_RS17460 NONE
SH05_RS17465 3526953 .. 3526968 + -10.4  -4.90869   CCTGGTAACATGAAA              GCCCAC AGAT GTGGGC               TTTTTCGTTGATGGT 100 359
SH05_RS17505 3536260 .. 3536281 +  -2.9  -4.45664   ATAGAAGGTGGTATC           CCTGGCTAT TAGC AAGGTCAGG            TTTTGATTCCATTCA  61 14
SH05_RS17510 NONE
SH05_RS17515 3537497 .. 3537524 + -15.7  -2.62386   TATAATTTAATGTTA        TATCTGCCCCG ATAAAA CGGGGCAGATA         ATATGTTTAGTTTAC 100 36
SH05_RS17520 NONE
SH05_RS17525 NONE
        gabD NONE
SH05_RS17535 3542883 .. 3542922 + -10.1  -3.53811   GGAGGCGACGCTGCG  CGTCTTGTCCGGCCT ACGGGGATCC AGGTCGGATAAGGCG   TTTACGCCGCATCCG  78 56
SH05_RS17540 NONE
SH05_RS17545 3545201 .. 3545223 + -10.6  -4.63184   AATACGCAACACTTG           CCCCGGATAA ATT TTATCCGGGC           TTTTTAGCATCGGTT 100 53
SH05_RS17560 3546351 .. 3546361 +  -3.2  -3.54935   TATTGTCCGTAAGGA                 GTCA CTA TGGC                 TTTGACAACCATTTC  49 29
SH05_RS17565 3547048 .. 3547065 +  -6.2  -5.00616   GGTGAATTTATATTT             CGCCGG ACGCGG CTGGCG              TTTTTTACCAGCGCG  83 192
SH05_RS17575 3548461 .. 3548483 + -19.2  -3.42283   CCTGACTCTTCTTTT           CGCGACTGGC ATC GCCAGTCGCG           TCTTTAACTGGCTTC 100 36
SH05_RS17585 3549344 .. 3549364 + -12.6  -4.89063   AATACGCGTCTTTGA            CCCCGAAG CCTGT CTTCGGGG            TTTCTTTTTGCCTGG 100 57
SH05_RS17590 NONE
        nrdI NONE
SH05_RS17600 NONE
SH05_RS17605 3553413 .. 3553437 +  -7.2  -5.15381   CTCTGTTGCATTATT          CGCCTGAA ACCACAATA TTCAGGCG          TTTTTTCGCTATCTT  90 140
SH05_RS17610 NONE
SH05_RS17615 3555921 .. 3555939 + -12.4  -3.31144   AAGTAACTCTGCACT             TGCCCGGT GAC GCCGGGCA             TTATCACCCTGCCAA  95 35
        proX 3556972 .. 3557001 +  -9.9   -2.6914   AGTAATTTTTATTCG       GGCGGATAAGGCG TTTT TGCCGCATCCGCC        GTTCTGTGCACAATG  71 36
SH05_RS17625 NONE
SH05_RS17630 NONE
SH05_RS17635 NONE
SH05_RS17640 3560185 .. 3560208 + -12.5  -4.56597   AAAGAAAAAATGACT          GGCCAGCAT CGCAAC ATGCTGGCC           TTTTTGGCAAGCAGG 100 73
SH05_RS17645 NONE
        emrB 3563002 .. 3563021 + -12.2   -5.1848   ACTAAGTACAACTAA            GCCAGTTC ATTT GAACTGGC             TTTTTTCAATTAATT 100 36
SH05_RS17715 3571075 .. 3571090 +  -3.2   -3.6692   TTCTGAAAAGACAGT              TGGCAA AGGT TCGCCA               TATTTTCGCGTCGCC  51 165
SH05_RS17735 3572999 .. 3573031 +  -4.4  -4.40572   TATGTTCTGTTGAAG     CAATT-ATACTGTAT GCTC ATACAGTATCAAGTG      TTTTGTAGAAATTGT  63 165
        srlA NONE
        srlE NONE
SH05_RS17760 NONE
SH05_RS17765 3577667 .. 3577684 +  -5.5  -3.27475   GACAGTCGATCAATG             TCACCGG CGGT CAGGTGA              TGTTCTGATCAACAG  55 0
SH05_RS17770 NONE
        srlR NONE
SH05_RS17780 3579966 .. 3580003 +  -4.9  -3.55444   TTAATCCTTCAATCC  CAGACGTTTCGCCAGCC GATGCA GGTTGGCG-A-CGTCGG   TTTCCAGCATCCGCG  55 37
SH05_RS17790 NONE
SH05_RS17795 3584262 .. 3584307 +   -12  -3.53811   GATGCGACGCTGGCG CGTCTTATCCGACCTACG GGGACGCATG TGTAGGCCGGATAAGGCG TTTACGCCGCATCCG  91 66
SH05_RS17815 NONE
SH05_RS17820 3592075 .. 3592085 +  -6.8  -4.14243   GCAGTTCACGGATAG                 CGAC GAT GTCG                 TTTTCCGGTGCGCTA  70 510
SH05_RS17865 3599721 .. 3599750 +  -5.8  -3.61398   TGAATTTCGTCGCCG       TGTCGACG-TGTC ATTTC GACATCATCGACA       TTATTCACCGCAGGG  61 512
        hypA NONE
SH05_RS17880 NONE
SH05_RS17885 NONE
SH05_RS17890 NONE
SH05_RS17895 3603480 .. 3603496 + -13.7  -3.72576   AGTCAATGACCTTTT              GCACCGC TTT GCGGTGC              TTTCCTGGAAGAACA 100 65
SH05_RS17900 3605601 .. 3605626 + -14.8  -2.77701   GATTTAACTGCAAAT         TGCCGGACAG ATCTGC CTGTCCGGCA          TACTATTCATGAGGT 100 34
SH05_RS17910 3608837 .. 3608863 + -11.7  -3.01924   CTGGTGTAATAACAA         TTCCCGATAGT CTTTT GCTATCGGGAA         TATTAACGACAACTG  83 32
SH05_RS17915 3609808 .. 3609834 +  -4.2  -3.58536   ACAGACCAAAACTCG         CTGGCGGCTGGC ACT GGCAATCGCCCG         TTTCACCGTGACTTT  53 241
SH05_RS17925 NONE
SH05_RS17930 3612725 .. 3612736 +  -3.6  -5.40072   AAATCTGGCAACTTC                GGTG ATGA CGCC                 TTTTTTTCACGAGCC  80 73
SH05_RS17935 NONE
SH05_RS17940 3614226 .. 3614243 + -11.3  -2.56095   CGTACCCATACATCC             CCCCATC TACG GATGGGG              TAGGTTAACTATAAC  79 63
SH05_RS17945 3615654 .. 3615673 + -12.2  -4.77165   TGACCTTAATAAAAA            GGTCCGAT GGGC ATCGGACC             TTTTATTGTGCACAG 100 38
SH05_RS18010 3626813 .. 3626848 +   -14  -2.65264   GTTTGAAAATGGGAG    CTGGGAGTTCTACCGC AGAG GCGGGGGAACTCCAAG     TGATATCCATCATCG  95 44
SH05_RS18070 NONE
SH05_RS18075 NONE
SH05_RS18080 NONE
SH05_RS18085 3644023 .. 3644037 +  -7.1  -3.30124   TTCAGCGCCTGATGC               GACGC TTGAC GCGTC               TTATCAGGCCTACAA  64 101
SH05_RS18115 NONE
SH05_RS18120 3652600 .. 3652623 +  -6.6  -2.52795   AACATACCTGAATGG          TTATCCCCGC TGAC GCGGGGAACA           TAAGTTCGACAACTT  55 75
SH05_RS18130 NONE
SH05_RS18135 3655775 .. 3655794 + -13.6  -4.66609   CTCAACCATAAAAAA            TGCCAGCC CGGA GGCTGGCA             TTTTTAAATCAGATA 100 41
SH05_RS18175 3667180 .. 3667211 + -10.9  -4.67943   GCGTTTAGCATCAGT      CTCAAACCGGCTC CAGATA GAGCCGGTTTTGG       TTTTCTGTCTTAACG 100 216
        queF 3675384 .. 3675410 +    -3   -2.5805   ATAAATTTTTTCTCA         ATTTTGCGTG CTGGATT CACGCAGAAG         GTTGTGAAAGGTCAT  42 37
SH05_RS18225 3676859 .. 3676880 + -10.1  -4.72556   CGTAATCTCCGCTCC           CCCGGTGAC GTTT GTTGCCGGG            TTTTCTCGTTTTTGG 100 36
SH05_RS18230 3678703 .. 3678722 + -12.8  -3.27786   CAGCTAAGTCCTTTC            GCGCCGCT TTCG GGCGGCGC             TTCCTCCGTTTTAAC 100 34
SH05_RS18235 3680132 .. 3680150 + -12.4  -3.08774   TAATCGCTCTCCAAA             GGCCTCGT TTT GCGAGGCC             TCTTCCCGATTTCTC  93 38
SH05_RS18240 3680992 .. 3681023 + -14.4  -3.32844   GGTACGGTAACGGCG      AGCCGGATACGCCG CAAA CGTCGTATCCGGCA       TTATCACATCAGCGC 100 31
SH05_RS18255 NONE
        fucI 3686600 .. 3686627 + -12.9  -3.01791   ACAAGCAAGAGTGGT        TAGCCGGATAA GCAATG TTATCCGGCTA         TATTGCAGGAGCGAT  95 90
SH05_RS18265 NONE
SH05_RS18270 3688500 .. 3688518 + -13.1  -2.60212   AATCTCATACCGGTA             CGCCCGC ATGAC GCGGGCG             GTTATCGAATGATGG  91 39
SH05_RS18275 3689290 .. 3689311 +  -8.6  -3.21993   ACGGAAAGGGTAGCA           GGCCGGAG ACGACG CCCCGGCC            TTGCCTGTTATCGCT  67 40
SH05_RS18300 NONE
SH05_RS18305 3694170 .. 3694207 + -14.9  -3.92542   GGTTTAAGCACAGAA   CCGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTGA    TTGTTTAACCCTGAC 100 34
SH05_RS18320 NONE
SH05_RS18325 NONE
SH05_RS18330 3696869 .. 3696882 +  -8.1  -6.02919   CAACCAATTATTGAA               CACCC TAAC GGGTG                TTTTTTTGTTTCTGG 100 35
SH05_RS18340 3699760 .. 3699804 + -12.9  -3.37761   GGTAAGCGATGAAAA TCGTCGGATGCGACATGCG TAACACT CGTACGTCGCATCCGGCAA TTACGTTTATTCCCG 100 36
SH05_RS18405 NONE
SH05_RS18410 3718795 .. 3718810 +  -2.5   -5.0917   TACACTGCGAATATT              CGGCA CATAAT TGCTG               TTTGTTTTTTAATCA  73 61
SH05_RS18415 NONE
SH05_RS18420 3720331 .. 3720348 +  -2.6  -4.13945   GTACGCTCTCCTGCG             GGAGGG CGTACT CACTCC              TTTTACCCTCACAGT  57 47
SH05_RS18425 3720669 .. 3720695 +  -7.3  -2.81421   ATTGAACGTTAACAA         ATAAGGTCAGC ATCCG GCTGGCCTTAA         GATTTTTCTCTTTCC  59 29
         tas 3721815 .. 3721842 + -12.8  -3.13403   ATCCGGCACCATAAG        ATTAACGCCGGT TAAA ACCGGCGTTAAA         TATTAATGACGGCGC  95 27
SH05_RS18445 3726845 .. 3726879 +  -9.3  -3.28791   CCAGTAATTCTTCGA    TGGTCTGGCGACGG CGAATCAA CCG-CGCCTGACCA     TTATCAAACAGAACT  69 64
SH05_RS18455 3729534 .. 3729547 +  -2.3  -3.94811   GTGCAACGTGACTCA               ATGGC ATCC GCCAC                TTTATGCATCGTATT  54 427
SH05_RS18485 3736262 .. 3736299 + -16.7   -4.8083   AGCTAATATCAGTTG   TGG-ATGGTTCAAAATTG CTA CAATTTTGAACCATTCCA   TTTTTCATAATATTC 100 35
SH05_RS18490 3737379 .. 3737404 + -11.3  -4.42386   ATCATACTCTGTTTA         TACGGGCATTT ATTG AAATGTCCGTA          TTTTATAAATAGGCC 100 60
SH05_RS18495 NONE
SH05_RS18500 3739451 .. 3739465 +  -2.8  -4.62069   AGGAATTTTTTTAAC               GGAATC CTT GGTTTC               TTTTTCGAGTCCGAA  68 514
SH05_RS18510 3740277 .. 3740292 +  -2.6  -3.96327   ATATTAGTAAAACAA              CTAATG ATGT TATTAG               TTTGTAGTGAACAGT  54 83
SH05_RS18515 3740959 .. 3740996 + -11.5  -2.75614   ATCATTTGGTTAAAT   TTGCTGGTTATAGTG CAGTTAAC CACTATAACCAGCAC    CTCTTATGTTTTCTT  81 49
SH05_RS18520 NONE
SH05_RS18525 3743056 .. 3743081 +  -9.1   -3.6187   CCAAATAAATCATAA         CGAGATACTTT TATA ATAGTATCTCG          TTCCTTTCATTCAAT  75 49
SH05_RS18530 3743616 .. 3743629 +  -2.3   -6.0427   AGGCTTCAGCAAAAT               GAGCC TAAA GCCTC                TTTTTTTTATATAGT  90 50
SH05_RS18590 NONE
SH05_RS18595 NONE
SH05_RS18600 3753152 .. 3753173 + -15.9  -3.08471   CGAAGTAAAAGGATA           TCCGGCCTG AATT CAGGCCGGA            TTCACTGAGGTTATG 100 33
SH05_RS18610 3756635 .. 3756656 + -13.7  -3.24232   GTGAAATAACCCCTC           GGGCCGATC AGCT GGTCGGCCC            TCTATTTCCAGAGGC 100 32
SH05_RS18615 NONE
SH05_RS18620 3759169 .. 3759188 +   -15  -4.71482   ACTCTTCACTTATTC            CCCTCCGG TTCG CCGGAGGG             TTTTTGGAGTTTGCT 100 43
SH05_RS18625 NONE
SH05_RS18630 3761755 .. 3761782 + -10.5  -4.54727   TTTGTCATCAGTCTC        AGGCCGGGTGG GTAATA CCATCCGGCCA         TTTTCATTTAAGCCA 100 211
SH05_RS18645 3765152 .. 3765162 +  -3.2  -2.88544   CCTGGCAAGAGTGGT                 GCGA TTG TTGC                 TCTATCCCCCTAAAC  43 263
SH05_RS18650 3768319 .. 3768329 +  -2.4    -2.867   TCATTATCTGCTGGG                 CCGC GTG GAGG                 TGTAATCATGTTGAT  41 10
SH05_RS18655 3769676 .. 3769698 + -17.8  -3.05384   CATAAATGACAGATG           CCCTCTTCCC GCA GGGAAGAGGG           TTAAATAAGGAAAGA 100 36
SH05_RS18660 NONE
SH05_RS18665 3773372 .. 3773387 + -11.8  -3.73323   ATATAAATAATAAAT              GGCCGC TTCG GCGGCC               TGTTTCTCTGTTTGA  93 35
SH05_RS18670 NONE
SH05_RS18675 NONE
SH05_RS18680 3777670 .. 3777693 + -13.9  -4.41348   GGCAATCTAATAGAT          TCTCCGCGC CTTTCA GCGCGGAGA           TTTCTTTCAGAGAGG 100 31
SH05_RS18695 NONE
SH05_RS18700 NONE
SH05_RS18705 3782140 .. 3782156 +  -7.2  -3.35798   TTTACCTGTCGGCAT              CCGCTC AAAAC GGGCGG              TTGTCGATAAACGCT  64 47
SH05_RS18710 3782795 .. 3782812 +  -8.3  -3.31263   GCTTAAATAAAAAAA             CCCCGAC ATTT GCCGGGG              TTGTGAGCATAACGT  69 31
SH05_RS18740 3789559 .. 3789588 +  -8.5  -3.77188   TACGCCTGATCTCAC       TGACGGCTTAGCG CATA TGCTTTGCCGTCA        TCTTTATCTTTGCGT  75 32
        ygfZ 3791729 .. 3791746 +  -9.1  -3.50572   CCGCCGAGCACGAAG             CCGTGCC AGAT GGCATGG              TTGTATGGAATGCGT  71 285
SH05_RS18770 3794486 .. 3794496 +  -8.2  -2.67244   CGCGTCCAGGCTCGC                 CGCC GCT GGCG                 TGCATTTCGGTATAA  59 234
SH05_RS18815 3805326 .. 3805342 +  -5.1  -2.92618   GTTACAGCCTGCGGC              GGCATCT CGG AGATTCC              CTTCTTATCTGGCAC  52 234
SH05_RS18820 3806310 .. 3806332 + -13.4  -3.66908   GAAGGGATAAAAAAA           CGGGCAAGTC AGT GACCTGCCCG           TTGATTTTCAGAGAA 100 370
SH05_RS18840 3809835 .. 3809857 +  -8.5  -3.45434   TAATCCATCAAATAA           TGCCTGATA GCACA TATCAGGCG           TTGTCCTCACTTCTT  71 38
SH05_RS18845 NONE
SH05_RS18850 NONE
SH05_RS18855 NONE
SH05_RS18860 3815636 .. 3815655 +  -5.6  -4.11216   CACCGTCAGAAAATG            TCCGCGCT CCAC GGCGCTGA             TTTTGGCCATAAAAC  65 205
SH05_RS18935 3831982 .. 3832013 +  -8.6  -3.16323   CGGGTGCCGAACGTA      GGTCGGATAAGGCG TTCA CGCCGCATCCGACA       TTAATGGCACGTTTT  67 160
SH05_RS18955 3835581 .. 3835591 +  -8.2  -4.36914   GCTTTTTATTTAAGC                 CGCG CGC CGCG                 TTTTATACCCCACAA  82 28
SH05_RS18965 3837059 .. 3837077 + -11.7  -5.48213   TCACCTGCGTTCAAA             GGCCAGC CTCGC GCTGGCC             TTTTTCTTTTGGATA 100 48
SH05_RS18970 3838879 .. 3838891 +  -4.7  -3.07787   GCTTCCTCCCATCGC                GGAGG AAG CCACC                TCTTGCAGTCATCTT  51 50
SH05_RS18975 NONE
SH05_RS18980 3840278 .. 3840300 +  -4.7  -4.71061   TACCCCACGCGTACA           ACCGCGTGG GGAGA CGACGCGGA           TTTTTAACTATGCGT  71 73
SH05_RS18985 NONE
SH05_RS18990 3842041 .. 3842081 +  -2.3  -5.00616   TCGTTGAGACTCTGA  GTGACAGCGCCCTTCTTTC CAC GCATACTGGGCGCTGTTGC  TTTTTTGAACCAGGA  68 62
SH05_RS18995 NONE
SH05_RS19000 3843194 .. 3843225 + -11.6  -3.17475   TGGCAGCGGCTATAG      GTCTGATAAGACGC GTTA GCGTCGCATCAGAC       ATTTATTGCCTTTGT  84 127
SH05_RS19010 NONE
SH05_RS19015 3845545 .. 3845574 +  -2.9  -3.21416   ATGCTGCTGCCAGGG       CTGTGGATGGCGTT ATG AATGCCGTA-ACAG       TTAATGATGACGGTC  44 8
SH05_RS19020 NONE
SH05_RS19025 NONE
SH05_RS19030 3847641 .. 3847672 + -11.6  -2.60392   TGGCAGCGGTTGTAG      GTCTGATAAGACGC GCAA GCGTCGCATCAGAC       GTTGATTGCCGGATG  80 87
SH05_RS19065 3853225 .. 3853236 +  -3.6  -3.55761   TACAGCAGTTACGCA                CTGG CGCG CCGG                 TTTAGCGCGTGAGTC  51 9
SH05_RS19070 3853550 .. 3853573 +  -8.9  -3.05384   TAAAAAATAAAAACA          GT-GCCGGAG CACGC CTCCGGCAAC          TTGCATAAAAACAAA  68 31
        mltC 3854832 .. 3854847 +  -2.5  -4.57569   GAATCCCATCATCTC              GCACG GTCAAA TGTGC               TTTTTCAAACACTCA  61 169
SH05_RS19080 3856153 .. 3856192 + -15.2  -3.81146   AGCCACTAATTACGC  AAAGAAAAACGGGTCGCC AGAA GGTGACCCGTTTTTTTTA   TTCTTACTTCAACAC 100 32
SH05_RS19090 3859414 .. 3859427 +  -3.7  -3.65351   TGCCGCTTTCCGCCG               CCTGG ACCG CCTGG                TTTGCCTGACAATGC  53 3
SH05_RS19095 3859632 .. 3859648 + -10.8  -5.10154   ACTAATTCTTAAGAA              CCCGCC CACAA GGCGGG              TTTTTGCTTTTGGAT 100 40
SH05_RS19130 3868729 .. 3868771 +   -13  -3.54424   TAAGACAGAATAATG TAAATGAAGCCGGATGAT ATTAACG ATCATCCGGCTTTATTGA TTTACGAGACTAACA 100 133
SH05_RS19165 3878276 .. 3878295 +  -2.9  -3.33151   CGCCCCAATGCGTTC            CA-GCATG TTATT CATGCCTG            TATTGGTTTCGAGGA  47 89
SH05_RS19175 3880406 .. 3880417 +  -2.2   -2.7186   AATGGCGAAGAAACG                GTCT AAAT AGGC                 TGATTCAAGGCATTT  40 61
SH05_RS19195 3884013 .. 3884035 +  -9.1  -4.08692   AGTCAAAAATGGAAA           TGCCCGATC GCCAG GACCGGGCA           TTTTCAGGAAGGTTA  83 39
SH05_RS19210 3888853 .. 3888866 +  -8.1  -3.30124   CACAATGCCTGATGC               GACGC TGCC GCGTC                TTATCAGGCCTACGA  66 109
SH05_RS19270 3898227 .. 3898241 +  -2.8   -3.1811   ACGTCAGATGGATAA               TGACGT ACC ACATCA               GTTTGTTATCCGGGA  45 139
SH05_RS19280 3899728 .. 3899754 + -14.5  -2.86539   TTTAGGTTAAAAAAA         TGCCCGGTTGT GAAAA GCAACCGGGCA         TCATTGTGAATTCAC 100 31
SH05_RS19300 3902626 .. 3902646 +  -3.3  -3.29459   TTGGACAATTTTGCA            GACATTTTA TTG TGAAAAGTC            TTAAATTGTTGCGTC  47 52
SH05_RS19305 3903409 .. 3903434 + -14.8   -3.5486   CCTGACGATTTTCCC         CGTTCCCGGT TGCTGT ACCGGGAACG          TATTTAATTCCCCTG 100 36
SH05_RS19320 3905755 .. 3905778 + -16.8  -3.25823   TTAAGTTCACAACAC          CTCACCGGAG CCTG CTCCGGTGAG           TTCATATAAAGGAGG 100 86
        dkgA 3906639 .. 3906667 + -10.9  -3.05775   TAACATGCAAATTCT        CCCGGTGGCGGTA ATG TTCCGCTACCGGA        CTTTTCAGAAATCAT  79 38
SH05_RS19330 NONE
SH05_RS19335 3908067 .. 3908098 +  -8.7   -5.0538   GCAGAATGATAAAAA      AATCCCCGGTAGC GTGTCA GTTGCCGGGGATA       TTTTTTAACGTCCAA 100 32
SH05_RS19385 NONE
SH05_RS19390 3921018 .. 3921049 + -14.6  -4.30576   CTGGTAACTTCTCTG      TCTATGAGAGCCGT TAAA ACGACTCTCATAGA       TTTTACTAATAGCAA 100 34
SH05_RS19400 NONE
SH05_RS19405 3922644 .. 3922668 + -14.3  -3.66578   TTAATCCTGCCTTGT          TTGCCCGGCCA TCC TGACCGGGCAA          TGTTCTTTCCTTTAA 100 37
        tolC NONE
SH05_RS19440 NONE
SH05_RS19445 NONE
SH05_RS19450 3930764 .. 3930791 + -14.2  -3.67558   GTTGAATAAGCCACG        ATACCGGATGGC ACTC GCCATCCGGTAA         TTGTTAGCCTATCTG 100 32
SH05_RS19460 3932514 .. 3932534 +  -9.8  -3.31322   AAAACAACATCAGAA            GTTGTCCA GCGCA TGGACAAC            TTCTGCCAGCTTCAC  76 40
SH05_RS19475 3934322 .. 3934360 +  -4.9  -4.24397   ACATTCGTCTTTAAT  GCACTGTAAATTATGA ATTAATCC TC-TAATTTATAGTGC   TTTCTATTACCTTAT  66 41
SH05_RS19480 3935147 .. 3935170 + -12.4  -2.72379   TTACGAGTAATCGCA          TTTGGCCGGG TTCG CCCGGCCACA           TCATTAACGGATTAA  88 31
SH05_RS19485 NONE
SH05_RS19490 NONE
SH05_RS19495 NONE
SH05_RS19500 NONE
SH05_RS19505 3940894 .. 3940909 + -11.8  -3.53164   ATACAAACACTAAAA              CGGGCC ATCA GGCCCG               TTATATCAGTGCTCT  91 47
SH05_RS19515 NONE
SH05_RS19520 3943720 .. 3943742 +  -8.4   -5.4251   CTCTTCCAGGAATAA           TCCCTGGC CCAAAAA GCCGGGGA           TTTTTTATATCTGCG 100 44
SH05_RS19525 NONE
SH05_RS19530 3944926 .. 3944943 +  -7.7  -3.23979   TCACCACGTTTACGC             GCTG-CCG CTA CGGCCAGC             TTCAGTTCCTCTTCG  61 522
SH05_RS19555 NONE
SH05_RS19560 3952372 .. 3952403 +   -13  -2.60392   CAACGACAGTTGTAG      GCCTGATAAGACGC GCAA GCGTCGCATCAGGC       GTTGATTGCCGGATG  91 92
SH05_RS19575 3954814 .. 3954828 +  -5.7  -2.63479   GACCGTTCCCCAACT               CCCAT ATTCC ATGGG               TCATATCGCGCTCTT  47 352
SH05_RS19585 3956534 .. 3956544 +  -2.4  -3.29144   AAAATCTGTCTCACA                 CCCG GAG CGCG                 TTATGAAAAAGATCC  45 9
SH05_RS19590 3957159 .. 3957178 +  -9.3  -4.57073   TCAAATAACCCTCCC            GGAGAGG CTCACC CCTCTCC             TTTTTCGCAGGCATA  95 33
SH05_RS19595 3958838 .. 3958863 +  -3.9    -5.243   GTACAAAATTCCGGA         CGC-GCGTAGAA CAC TTCGCCGCGGCG         TTTTTTCATCATTTC  84 201
        rpsU 3960219 .. 3960245 + -10.9  -4.40882   AGTTGTAGTTGTAAG        GCCGTGC-TTCC GAAA GGAATGCGCGGC         TTATTTTCGTTTATG 100 73
        dnaG 3962127 .. 3962139 +  -4.8  -3.28269   CGTAATTATCGTTGG                CGGT AAACA ACCG                TTGGATTTCAGCGTT  53 125
SH05_RS19615 3964119 .. 3964137 + -11.7  -5.24129   GGCCCTCTGCACAAA             CGCCACC TTTTC GGTGGCG             TTTTTTATCGCCCAC 100 81
SH05_RS19625 3964860 .. 3964881 + -14.5  -5.71295   ACCAGATATAGCAAA           GGCTGACGA GAAA TCGTCAGCC            TTTTTCTTTTTATAT 100 37
SH05_RS19635 3966746 .. 3966775 + -11.3  -3.57144   TTAATGCAGTACCGT       CACCGCGTCTTCC AGTC GGCTGGCGCGGTG        TTTCACCATCGCCGA  89 194
SH05_RS19645 3970054 .. 3970086 + -12.8  -4.82901   AGAAGCGTAATATCA      AATCGGATGGCGAT ACGAC GTCGCCATCCGATC      TTTTTATACGACGCG 100 31
SH05_RS19655 3971633 .. 3971671 + -12.6  -2.64766   CCGTTAAATCCCCTT  ACA-CACTGTCCGGCAA TCGTTT TTGCCGGACAGTGCTGC   CGTTTATTTTCGTGA  88 34
        ebgA NONE
        ebgC NONE
SH05_RS19670 3976869 .. 3976900 + -11.1  -3.05274   AAAAATGAGCAGGCA      TTTTCCCTCTTCCT GGATG AGGA-GAGGGAAAA      TAGTTTCTGCCTTTA  79 52
SH05_RS19675 NONE
SH05_RS19680 3980436 .. 3980447 +  -7.2  -3.30243   ACTGCTGGCGGATGC                GGCG TAAA CGCC                 TTATCCGCCCTACAT  64 47
SH05_RS19685 3982867 .. 3982901 + -10.6  -2.50816   GATTTAAATCGTTAT     TTGAAGCGCCGGATGC AAC GCATCCGGCACGTCGC     GTTAATCAATAAACA  73 34
SH05_RS19710 NONE
SH05_RS19715 3986397 .. 3986411 +  -2.8  -2.87564   AGCATGGCTGTCCGG               CGCA GAAATAA TGCG               TATCTGCGCACGTCG  42 15
SH05_RS19720 3987630 .. 3987649 + -10.8  -5.56673   CCGGGCAACCCGAAA            GGAATACG CAGA CGTATTCC             TTTTTTGTTGTAAGT 100 183
SH05_RS19725 3988873 .. 3988887 +  -5.7  -5.30189   CCAAACGGGGCGAGG               GGACT GACCG AGTCC               TTTTTTGATGTTGTC  86 178
SH05_RS19730 3990372 .. 3990396 + -14.3  -4.44974   TAATTAATTGTTTAA          CCCCTTTCGTC TAC GGCGGAAGGGG          TTTTCTCAACTTTAA 100 34
SH05_RS19750 3995729 .. 3995746 + -12.7   -4.7497   TAGTTTCCCTTCAAA             GCCGCCT TCTC AGGCGGC              TTTTTCATCACTGCG 100 57
SH05_RS19755 3996617 .. 3996636 + -10.7   -4.0942   GAAATTCCTGTCCGA            CAGGCGC TGCAAT GCGCCTG             TTTGTCTCGTCGGTA  93 39
SH05_RS19760 NONE
SH05_RS19765 3998061 .. 3998086 + -11.9   -2.6914   CTGTCTATGATTAAT         GAGGCGGTGGT TAAC ACTACCGCTTC          GTTGTCTGGACAATC  83 89
SH05_RS19770 NONE
SH05_RS19775 NONE
SH05_RS19780 NONE
SH05_RS19785 3999561 .. 3999579 + -12.4  -3.37071   GGTTAACTTCCCTCT             GGCCGGAG CCA TTCCGGCC             TTATCCCTCAAATTT  95 35
SH05_RS19790 4000157 .. 4000174 + -11.3  -4.87626   CTTAACGATAAAAAA             CGAGGAG GAAG CTCCTCG              TTTTTGCTATTGGAG 100 53
SH05_RS19795 4001191 .. 4001208 + -11.3   -2.8664   CTTCGGTTAAAAAAA             GGCACCT TACG AGGTGCC              TCTGATAATTAGCTA  81 31
SH05_RS19800 4001858 .. 4001880 + -10.6  -4.60977   AAAACAAATCTGCTC           GCCGGATG TCTGACT CATCCGGC           TTTTATCATTATGTT 100 39
SH05_RS19805 4002453 .. 4002470 + -12.7  -5.07486   ATTAATCTTAGAATT             GGGGCGA TATT TCGCCCC              TTTTTATTAACAATA 100 36
SH05_RS19815 NONE
SH05_RS19820 4004401 .. 4004412 +  -7.2  -3.30124   CAGGTTGCCGGATGC                GGCG AAAA CGCC                 TTATCCGGCCTACAA  64 44
SH05_RS19880 4018104 .. 4018118 +  -4.2  -3.59402   TTTTGATCGGCGTAG               GCCACA GAA TGTTGC               TTCGTTTACTGTAAC  54 157
SH05_RS19885 4018743 .. 4018757 +  -2.9  -5.23396   CTTTTTTTCACCCGA               TCATT TTAAT AATGA               TTTTTATTGATTATT  73 1
SH05_RS19890 4020336 .. 4020349 +  -9.5  -4.65895   CTCCAAAAGTAAAAA               CCCGC CGAA GCGGG                TTTTTACGTAAAACA 100 385
        garD 4027254 .. 4027271 +    -7  -5.38549   ACGTCCCTCGCAAAA             CATGGC CTTAGT GCCATG              TTTTTATTGTTTAAA  89 52
SH05_RS19920 NONE
SH05_RS19925 4028280 .. 4028298 +  -4.4   -3.1505   TTCGCAGTCCTTCCA             GGCTATCC GCA GGAATGCC             TTCATCAACAATGAT  49 130
SH05_RS19935 NONE
SH05_RS19940 NONE
SH05_RS19945 NONE
SH05_RS19950 4032018 .. 4032041 +  -3.2  -5.12987   TTTGCTCCTTTATTG          GGCCTTCAC TTCCCCC GT-AAGGCC          TTTCTTTTTCTTTCG  75 44
SH05_RS19955 NONE
        kbaY 4034409 .. 4034430 + -10.9  -2.56596   ATTTATCCCAATGTA           CTTCCCGAT TAAT ATCGGGGAG            TGCCTTAATGGAAAA  76 57
SH05_RS19965 NONE
SH05_RS19970 NONE
SH05_RS19975 4036651 .. 4036675 +   -10  -3.90856   TTTTGTAAATGGAAC          GAGGCACTGC GTCTG GTGGTGCCTC          TTTACTTAAGGAATT  86 33
SH05_RS19980 4037476 .. 4037519 +  -2.5  -4.22524   AAATAACATTTGACT GGGTTGAACATAACGCC GATAGCAAAA GGAGTTATGTTCAACAA TTTAATTTTAGATAT  57 102
SH05_RS19985 4038392 .. 4038421 + -19.5  -4.50241   ACCGTTAATACGTTA       GGGCGTTATCTGA CCTG TCAGATAACGCCC        TTTTCCTTCCTCTTT 100 33
SH05_RS19990 NONE
SH05_RS19995 NONE
SH05_RS20000 4042910 .. 4042926 +  -6.5  -5.00616   ACGCCGTGAATTTCT              GCGGC CAGCGCC GCCGC              TTTTTTCAGCGGCAG  83 129
SH05_RS20010 NONE
SH05_RS20015 NONE
SH05_RS20020 NONE
SH05_RS20025 4047382 .. 4047396 +  -7.1  -3.30124   TGTAATGCCTGATGC               GACGC TTGCC GCGTC               TTATCAGGCCTACAA  64 49
SH05_RS20040 4050128 .. 4050138 +  -8.2   -5.4833   CGGCCCACTCATCTG                 CGCG TGG CGCG                 TTTTTTCTTCCGTCA 100 287
SH05_RS20050 4050978 .. 4050989 +  -4.4  -2.87132   ACATAGCCAATGACC                TGAC CTTC GTCA                 TCTGTCGCCACCAGC  47 361
SH05_RS20065 NONE
SH05_RS20070 4053776 .. 4053796 +  -6.3  -3.18264   AACAACTTTAACTAC            TCTTTAATG CAG TATTAAAGA            TTAATCGGTAACAAA  57 60
SH05_RS20075 4055208 .. 4055218 +  -2.4  -4.07568   TGGCGGGGCAAAGGT                 CAGC AAT GCCG                 TTTTCAAGCGGCCCA  56 404
SH05_RS20085 4056328 .. 4056341 +  -6.7  -2.72344   TTTTACAGATTGTGT               TCGCT GTTC AGCGA                TGATTACGCATCACC  56 9
SH05_RS20140 4070366 .. 4070386 +  -8.9  -3.25356   GTAATTCGACATCAA            CCCTGCCCT TCA GGGGTGGGG            TTACCTTGCTTATCC  71 37
SH05_RS20180 4078543 .. 4078570 + -13.6  -3.25946   CACGCTCTGTTCGTT        GATAAAAGGCCGC ATA GCGGCCTTTT-TC        CTTTCTTTACAATAC 100 111
SH05_RS20190 4080939 .. 4080962 +  -8.2  -3.36327   CATCAGGCTGATTTG          GCGTTTATCA TCAG TGATTAACGC           TTGTAAATGAACTCA  69 194
SH05_RS20215 4085069 .. 4085087 +   -16   -2.7386   AATCCCCTCCCCTCA             TCCCGCGC AGC GCGCGGGA             TGGTTCCAGTAAGTT 100 39
SH05_RS20220 4085877 .. 4085892 +  -5.4  -3.68351   GGCACATGCATAAAG              CGGTTT TCAA AGACCG               TTTCGGTGATAAACC  58 341
SH05_RS20260 NONE
SH05_RS20265 NONE
SH05_RS20270 NONE
SH05_RS20275 NONE
SH05_RS20280 NONE
SH05_RS20285 NONE
SH05_RS20290 NONE
SH05_RS20295 4096863 .. 4096887 + -12.9  -2.95459   TAGCATGTGCATGGC          GGTCTGTTGTG CGG CACAACGGGCC          ATTTGTACGGTTAAT  95 54
SH05_RS20300 4097455 .. 4097469 +  -2.1  -3.28712   GTAGTTATTCGGTAA               TGTCT CTTTT AGACG               TTGTGAGGAGAAACA  45 37
SH05_RS20305 NONE
SH05_RS20310 4098600 .. 4098621 + -10.3  -2.75963   CTTTAATTCTGGTTT           TGATGAAGA TTAA TCTTCATCA            CTTTGACATACAACT  75 13
SH05_RS20315 4099615 .. 4099625 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  65 182
SH05_RS20325 NONE
SH05_RS20330 4101670 .. 4101701 +  -2.3  -4.40358   GTCTACTTGTGATAA      C-AATGCCGGACAG GAGTA CTATCAGGCATTCG      TTTTATACGATCGGT  58 29
SH05_RS20335 4102993 .. 4103019 + -12.4  -3.53444   ATTTCAGCGGTTTCG         AATTCTGCAGAC AGT GTCTGCAGAATC         TTTAAAACGAACTAA 100 40
SH05_RS20370 4110274 .. 4110300 + -15.3  -3.23853   AAGTCATTAAAAAGA         CAAAACAGGCC GCCTG GGCCTGTTTTG         TATTACTTCACAACG 100 39
SH05_RS20400 4114624 .. 4114642 + -12.4  -2.83517   ACTAATTTATTTTTC             GGGCGCAG CCA TTGCGCCC             TCCTCTTCTCTCCCT  89 36
SH05_RS20405 4116144 .. 4116173 + -10.7  -3.11192   CGTTAATGTCGTAAA       CCGGGCATCAGGC TTAC GTGTGATGTCCGG        TTAACTCGTGGTATG  79 35
SH05_RS20410 4117314 .. 4117331 +  -9.1  -5.55769   GCTCAAAACAAAAAA             CCGGAGT CTGT GCTCCGG              TTTTTTATTATCCGC 100 48
SH05_RS20420 4119200 .. 4119230 +  -8.2  -3.30039   CCAGGAGCTTTAATC       TCTGCCCCGTCGTT TCT GACGGCGGGGAAAA       TGTTGCTTATCCCTC  69 28
SH05_RS20425 4119853 .. 4119869 + -15.1  -5.78622   TTGTCCGACGATATT              GCCCCCG GTT CGGGGGC              TTTTTTTTGCGCTAA 100 53
SH05_RS20450 4124667 .. 4124681 +  -4.2  -3.90744   CTGGCCCACGCCAAC               CGGCAA ACT TTGCCC               TTCTTTACCGCAGAC  58 219
SH05_RS20490 4135598 .. 4135614 + -10.9  -2.57985   CTTCCACCAGGCTTT              GAACCAG CAG CTGGTTC              TCCGTTCGCTTCTCA  69 216
SH05_RS20500 4138723 .. 4138743 +  -6.7  -2.78696   TATGTTGCTTTGCCT            GGGCGACGC TAC GCTTAGCCC            CTTACTTATTTCTGG  57 266
SH05_RS20510 NONE
SH05_RS20515 4139043 .. 4139061 +    -3  -2.98381   CTTACGTTATAAGAA             GTTCCGTC GAT GATGGCGC             TAATTTCGTGAATTG  44 13
SH05_RS20520 NONE
SH05_RS20525 4141310 .. 4141326 + -13.7   -5.5112   GCTAAAGCGTCAAAA              GGCCGGA TTT TCCGGCC              TTTTTTATTACTGGG 100 45
SH05_RS20530 NONE
        panF NONE
        prmA 4144221 .. 4144235 +  -6.4  -3.86202   CCATCTCAGAGGATT               GGTCAA AGT TTGGCC               TTTCATCTCGTGCAA  65 271
SH05_RS20545 NONE
         fis 4145621 .. 4145646 +  -8.2  -5.29782   ATGCTTGATTAAAAA         GGCGCTACTC GGCATG GGGAAGCGCC          TTTTTTATAGGTGTC 100 55
SH05_RS20555 4146575 .. 4146585 +  -3.2  -2.94202   AAAGGATGTGTAAGC                 CTGG TTT TCAG                 ATTATTCATTTCGTG  44 39
SH05_RS20560 4146838 .. 4146862 +  -5.2  -4.13911   GAATTTACATGACAC          TTAATTCATT CGTTT GATGAATTAA          TTTCGTTATGTTTTC  65 39
SH05_RS20570 NONE
SH05_RS20575 4152172 .. 4152195 +  -8.2   -3.9392   GATAAATCAGAAACA          TAAAGGCGCT TTCG GGTGCCTTTA           TTATTTCCAGTGAAA  77 36
SH05_RS20580 4152643 .. 4152662 + -12.8  -4.59773   CGAAATAACTGAACA            GGGCGCGG AGTT CCGCGCTC             TTTTTAACGATACAG 100 33
SH05_RS20585 4153085 .. 4153108 +  -6.6  -2.75481   AAAAGATGATGATAG          CCACACTGGC TGCC GCCAGCGTGC           TGCTTGCCGTTGCAA  57 73
SH05_RS20590 4154107 .. 4154128 + -13.7  -3.07233   TCGGTGTGAGGTAAC           GAGCGTCGC TACG GCGGCGCTC            TCTTCAGCGTTATGC 100 42
SH05_RS20595 4155315 .. 4155325 +  -2.4  -2.71731   GAATATCTATAACCG                 CCGC ATC GCGA                 TCGTTGAACGCTAAG  40 1
SH05_RS20600 NONE
SH05_RS20605 4157245 .. 4157264 + -13.6  -3.83214   TTCGAAAAGCAAAAA            GGCCATCC TTTC GGATGGCC             TTTCGCTTGATTTGA 100 52
SH05_RS20645 4164201 .. 4164211 +  -3.2  -3.96327   CACCATGCCAGAAAA                 GGAG TTT TTCC                 TTTCTGATAGAACAT  55 412
SH05_RS20680 NONE
         fmt 4169201 .. 4169219 +    -8  -5.01535   TAGTCCACTCTTCTA             AGCCCGGT CTT GCCGGGCG             TTTTTATACTTATGA  95 41
SH05_RS20690 4170540 .. 4170554 +  -3.6  -3.35679   ATAACGGGTCGCGAC               TGATGA AAA TTATCA               TTCTGGGTGCCGGCC  49 45
        trkA 4171920 .. 4171947 + -15.8  -3.89938   CTTTCTTCTTGTAAT        TAATAAGGCGTC TAAT GACGCCTTATTA         TTTCCCTTTGATTAT 100 27
        mscL 4172617 .. 4172635 +  -3.2  -3.06686   TAAGGGATCATGTAG             TAATGC TTCTATC GCATTA             TCCTTTATCTGCCCT  43 184
SH05_RS20870 NONE
SH05_RS20875 4192335 .. 4192357 +    -4  -3.26947   CAACAGTCACGCCCC           TGCGCCATCG TCA CGGTGAGGCA           TTCATATGAGAATTC  51 7
SH05_RS20880 4193820 .. 4193841 +  -4.3  -2.61106   TATGCGCGTCGCCAG           TGCCACGCT GGAG AGCGAAGCA            TGAATTATCGCTATC  45 1
SH05_RS20885 NONE
SH05_RS20890 NONE
SH05_RS20895 NONE
SH05_RS20900 NONE
SH05_RS20905 NONE
SH05_RS20910 NONE
SH05_RS20915 NONE
SH05_RS20920 NONE
SH05_RS20925 4200292 .. 4200319 +    -7  -3.25102   CCTTCTTCGCGGATC        TGTGCTTGCAGA TAAT TTTGCAGGCCCA         TCTTCTGAATCAGAT  61 73
SH05_RS20990 4211888 .. 4211916 + -14.7  -2.85763   ACATTATTGAGGCGT        AAAAAAAGCGGGG ATT CCCCGCTTTTTTG        TCACTTTTTCGGTAT 100 31
SH05_RS21015 NONE
SH05_RS21020 NONE
SH05_RS21025 NONE
SH05_RS21030 4219531 .. 4219549 +  -6.7  -3.38046   GGCAGAGAGATCAAC            CGCACGCG CAAC CGC-TGCG             TCTTTCAGGTCGCGA  59 173
SH05_RS21040 NONE
SH05_RS21045 4220788 .. 4220812 + -16.5  -4.86731   TTAATCCCGTCGGAG          TGGCGCGTTAC CTG GTAGCGCGCCA          TTTTGTTTCCCCCGA 100 37
SH05_RS21050 4222952 .. 4222976 +  -4.2  -3.45571   TAAGGCATTCACGCC          GCATCCGACA TCTTT TGCCTGATGC          TTCGTATTTACGCCC  52 60
SH05_RS21080 4227781 .. 4227808 + -10.5  -4.43213   CTCATTAATTGCTCA        TGCCGGACGGC ACTATC GTCGTCCGGCC         TTTTCCTCTCTTCCC 100 33
SH05_RS21085 NONE
        nirD 4230910 .. 4230930 +  -8.9  -4.68994   CGGTTAATGTTTTAA            CGGGAGGCG CAA TGCCTCCCC            TTTTTGCATGGTCCT 100 34
SH05_RS21095 4231819 .. 4231829 +  -2.4  -3.39895   TTTAATCAAACTGAA                 ACGG CTG CCGG                 TTAATTACTAAGGGG  45 11
        cysG 4233235 .. 4233252 + -11.3  -3.74762   CATTAATTTAACCCG             GGCCAGA GAAT TCTGGCC              TTCTTAATGACTCTT  95 35
SH05_RS21105 4233679 .. 4233706 + -10.6  -4.65722   CCGGTTTAATTGCCC        GACGCCCTCTGGA TTT TCC-GAGGGCGTA        TTTGTTTCTATGTCC 100 65
        frlA NONE
        frlB 4236322 .. 4236343 + -12.9  -3.53343   AATATTAATCCCTCT           CCCGGCCCG GCAA CGGGCCGGA            TTTACGCAAGGAGTT 100 33
SH05_RS21120 NONE
SH05_RS21125 4237983 .. 4238010 + -16.4  -2.80699   GCCTGGTAGGTATAA        CGTTGGCGTGAG CATC TTCACGCCAACG         TGCTGTTACTTGCCG 100 32
SH05_RS21130 4238820 .. 4238862 + -14.9   -4.1899   TAACCGTAGGCCGGA TAAGATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCGTTGAA TTTTACATCCCGTAC 100 38
        mrcA 4259455 .. 4259468 +  -9.5  -4.37711   TGTTCTGATTAAAAA               GGCGC TTCG GCGCC                TTTTCAGTTTGCTGA  88 33
SH05_RS21245 4262633 .. 4262667 +   -18  -3.39142   TTATCGAATAACACG     TTTGCGCGGCAGGTTA TGC TACCCTGTCGCGCAAA     TTGCTTCACTCTGGA 100 30
SH05_RS21250 NONE
SH05_RS21255 NONE
        hslO 4264685 .. 4264708 + -16.8  -4.12188   TCATTAATGAGTATG          TCCGGCAGAG AGGG CTCTGCCGGA           TTTTACGACTAATAC 100 34
SH05_RS21275 4268513 .. 4268534 +   -13  -4.46835   TTATAGAAAGCAAAA           CGGGAGGC ACCTTC GCCTCCCG            TTTATTTACCCTTCT 100 74
        greB 4271331 .. 4271345 +  -3.5  -4.56775   AGAGTCTTAACCTCC               TGCCG ATGGC TGGCA               TTTTTGCCAGCCAGT  65 44
SH05_RS21295 4273830 .. 4273850 + -15.5  -5.06414   TGCCTGACATAAAAG            TGCCGGAGA ATA TCTCCGGCA            TTTTTATTCCACAGC 100 125
        feoA 4274396 .. 4274408 +  -4.1   -3.1478   GGCCTTATTAGAAGT                GGAAG CGG TTTCC                TGTTAATACGGTGAT  49 7
        feoB 4276745 .. 4276756 +  -5.8  -3.29013   GCACCACCGGTGATT                GCCA TTAA TGGC                 TTCACTTATTCAGGT  57 18
SH05_RS21310 4277015 .. 4277039 + -12.2  -5.08824   CGCCTGTTTTGGAAA         GCCCGGTATGC GTCT GCAT-CCGGGC          TTTTTTGCGTGCGGC 100 52
SH05_RS21315 4278057 .. 4278083 + -10.8  -2.71712   AGAAGAGTTGGCTGC         GGCGAGTCAGTA AAG TTCTGTCTCGCC         ATTTCAAAAGCCACC  76 13
SH05_RS21325 NONE
SH05_RS21330 4280245 .. 4280278 +  -8.7  -2.53581   CCCTCTTTTGTAGAT     TGCCCGATGCGACGC TAAA GCGTCATTTCGGGCC      TACGTTGAACATGTG  65 47
SH05_RS21335 4282109 .. 4282121 +  -3.3  -4.93296   AAGCGTTGCGGAAAG                CTTGC GTC GCCAG                TTTTTATACTGGTAA  74 235
SH05_RS21350 4290113 .. 4290140 +  -3.5  -3.78026   GCACTGACGCGCTTT        TCACCGA-CG ACAAAAAAG CGTTCGGTGA        TATTTTCACTTTCGA  56 324
SH05_RS21365 4294384 .. 4294396 +  -6.9  -5.12068   GCTCCGCCACTTTGC                GGGCG ATG CGCTC                TTTTTCTTCGGTCTG  90 519
        glpD NONE
SH05_RS21425 4309774 .. 4309804 +  -3.1  -3.69323   TGGAACGCAATCATC       CCAACGATGGCAC CGACA GTGCCGAGGATGG       TTTCCATCATGGTCC  51 110
SH05_RS21455 4315659 .. 4315683 + -10.1  -2.90723   TGAAGTAAGATAGTG          CCCTTTTTCTG AGA TGGAAAAAGGG          TGTCATTCAAAATCG  73 33
SH05_RS21460 NONE
SH05_RS21465 4317684 .. 4317697 +  -2.3  -3.05384   GAAAATCATTGATAT               GGCCA TGAA TGGCG                TTGGATGCCGGGCAA  42 230
SH05_RS21470 4318560 .. 4318573 +  -5.3  -2.76322   TTTAGAATTTTACCC               GAATC ATAA GATTC                TGATATCTTAAATAA  50 380
SH05_RS21475 4319525 .. 4319537 +  -2.6  -3.53224   CCAGCCCGTAAACGT                TCGG TACGC CCGG                TTTGGCGGAGAAATC  47 482
SH05_RS21485 4321456 .. 4321487 + -16.6  -4.17556   CAGATGCAATCCACA      CCCCAGCGCAGCAAC TCT GCTGC-GCGCTGGGG      TTTATTGACGGTATA 100 73
SH05_RS21545 NONE
SH05_RS21550 4332553 .. 4332571 + -10.3   -2.5785   ATATTAGCAATTTGG             CGGCAAC CCAAA GTTGCCG             ATTAATGATTACTTC  74 54
        rsmD NONE
SH05_RS21585 4339394 .. 4339404 +  -8.2  -3.61268   GTCTGCTCCATTCCT                 CCGC TTT GCGG                 TTTGAAGCTTGCCTC  69 146
SH05_RS21595 4340413 .. 4340432 + -12.2  -3.01984   TCTGATAAAACTTGA            CTCTGGAG TCGA CTCCAGAG             TGTATCCTTCGGTTA  86 36
        zntA NONE
SH05_RS21610 NONE
SH05_RS21615 4344555 .. 4344582 + -13.4  -5.52384   TTTAAGATGATGAGG        CGGCCTCAGGGA CGTG TTCCGGAGGCCG         TTTTTTTAATCGCCA 100 43
SH05_RS21625 NONE
SH05_RS21630 4347627 .. 4347654 +  -7.1  -3.91984   CAGAACAGGTAATCA        GTATGACGAAT ACTTAA AATCGTCATAC         TTATTTCCGCCATCT  72 71
SH05_RS21635 NONE
SH05_RS21640 NONE
        nikC NONE
        nikD NONE
        nikE NONE
SH05_RS21660 4353144 .. 4353155 +    -3  -3.68064   AAAATCTTCAATTCA                TTGT GACC ACAA                 GTTTTTCTTCGCTTT  51 155
SH05_RS21665 NONE
SH05_RS21670 4357892 .. 4357903 +  -2.2  -3.17763   GATAGAAAAAGATAG                CCTT TATG GAGG                 TTCCTGCAATGTCAA  43 110
SH05_RS21675 NONE
SH05_RS21680 4359656 .. 4359697 + -10.3  -3.81755   CTAAAATTCAATAAA TTGCACCGATGCGTAGTC CCTATAA GCTTACGCATCGG-GCAA TTGTATTTACGCCAT  86 142
SH05_RS21720 4369939 .. 4369966 +  -6.4  -5.07486   ACGTACCGGATAAAA        CCAGCGTTGAC CATTTGC GT-AACGCTGG        TTTTTCTTAGGCATC  84 46
SH05_RS21730 4373358 .. 4373379 + -13.7  -5.66684   TGTAATCAGTCTCGA           GCGGGTCAG TTTA CTGGCCCGC            TTTTTTTATGCGTTA 100 217
SH05_RS21740 4374597 .. 4374614 + -14.1  -4.77757   CGACGTGTTCCTGAA             CGCCCGC ATAT GCGGGCG              TTTTGCTTTTTGGCG 100 52
        tppB 4376373 .. 4376396 + -16.8  -4.67641   TATTCTTGCAGAAAG          CAGGGTAGCG TTAT CGCTACCCTG           TTTTAGTTTTACACT 100 42
SH05_RS21760 NONE
SH05_RS21765 4381685 .. 4381711 +   -16  -3.43217   GCGTTAAATGTTAAA         GGGCTAAGAGTA GTG TGCTCTTAGCCC         TTAATTACGTTTCCG 100 34
SH05_RS21775 4382148 .. 4382162 +  -7.1  -5.47218   CTGGAAAGTAAAAAA               CCGAC GCAAA GTCGG               TTTTTTTACATCCGG  95 159
SH05_RS21780 4382920 .. 4382941 +  -5.9  -4.36914   AAAAATTTAGCTAAA           CACATATGA ATTT TCAGATGTG            TTTTATCCGGGAGGC  70 39
SH05_RS21785 NONE
SH05_RS21790 4384746 .. 4384759 +  -8.1  -3.30124   ATTTATGTCGGATGC               GACGC TGGC GCGTC                TTATCCGACCTACAA  66 84
SH05_RS21795 4386096 .. 4386106 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  65 23
SH05_RS21805 4387742 .. 4387764 +  -2.8  -3.06183   ATAATACCATAATAT           TGATTATTAG CAC TTTATAATCA           TTGAATAAAAATAGA  43 29
SH05_RS21810 4388563 .. 4388593 + -12.7  -2.55015   AATAACACCACCGAA       AGATGCAGATGCT TTCTC AGCATCTGCATCA       TGCATTACATCAAAT  86 36
SH05_RS21815 4389732 .. 4389745 +  -2.3  -2.62184   CAGCAATACGGCTGG               GGTCG AGTC CGACG                TGATCTAAAGACAGC  38 519
SH05_RS21835 4391609 .. 4391643 + -15.9  -3.26545   TACCCCGGTTGTCAC     CCGGATCATAGTCAC TTGAT GTGACTATGATCCGA     TTAATACTCTCTCCG 100 42
SH05_RS21840 4393081 .. 4393099 +  -3.1  -6.02345   AATGCTGGCAGGAAC             TGTTGGC AGAAC GGCAACA             TTTTTTTTGTCGTTG 100 188
SH05_RS21850 NONE
SH05_RS21855 4397564 .. 4397597 + -14.8  -3.78953   GTAACGTGTAAATGA     GAGTAAGGTTGAAC ATGAAG GTTCAGCCTTACTC      TTTCCTGCTAACCAT 100 37
        treF 4405270 .. 4405307 + -12.9  -3.52073   GGCGAACCATAATAT   TTTTACAGCCAGCCG CTAACTTC CTGCTGGCTGTAAAA    TTATCCTCTTCAGGA 100 29
SH05_RS21890 NONE
SH05_RS21895 4408467 .. 4408498 +   -13  -2.78596   CCTGGCTCCCCGTAG      GCCGGATAAGATGC GCCA GCATCGCATCCGGC       TATAATGCGCACATA  91 92
SH05_RS21900 4410284 .. 4410308 + -17.3  -3.45434   TCTAAATCTGTTTAA          TTGCCGGATGT CAG ACATCCGGCAA          TTATCATCACTTCTT 100 176
SH05_RS21915 NONE
SH05_RS21920 4414433 .. 4414468 +  -6.9  -3.26471   CAGCTCATCCATAAA    TACCTGATGGTTGTG CTAACT CATCACCATCAGGCA     TTACTGTGCAGGTGG  61 85
SH05_RS21975 NONE
SH05_RS21980 NONE
SH05_RS21985 4435378 .. 4435419 +   -11  -4.60797   TAGAGTCAAGATTAG CCCCCGTGGTGTTGTCAGGT GCAT ACCTG-CAACG-TGCGGGGG TTTTCTCTCTCCAGC 100 286
SH05_RS22000 4437060 .. 4437078 +  -7.3   -4.4715   AGCTGATTGAGTAAA             CCGGAGC GCATG GCCCCGG             TTTTGTGAGTTAACG  78 27
SH05_RS22025 4441259 .. 4441285 +    -5  -4.81249   TGCAGAATTTTCGTA         GGCCTGATAAGC GGA GCGCATCAGGCA         TTTTTGCCTTTGCCA  74 25
SH05_RS22060 NONE
SH05_RS22065 4449379 .. 4449401 + -11.3  -2.66695   TTACCCGCACAGCCA           TTCCCCAGC CGCGA GCTGGGGAG           ATCTTTGGTCAGCAC  73 88
SH05_RS22075 4452440 .. 4452467 + -14.3  -3.82481   CTGTAATCCCTTTCA        TGCCAGGTGAT GCAGAA ATCACCTGGCA         TTCTTCAGTTTTCCT 100 35
SH05_RS22080 4453523 .. 4453556 + -10.5   -4.2528   AGCCGCGACTGCGTA     GAGTAA-AGCCCGA TAATCGC TCGGGCTTTTACTC     TTTATTGGGTTGCAG 100 40
SH05_RS22090 4455019 .. 4455038 + -13.6  -4.08692   CTTTATTGCTGTTTA            CGGTCCTG ATGA CAGGACCG             TTTTCCAACCGATTA 100 52
SH05_RS22095 4455514 .. 4455533 + -11.4  -6.11392   GCACAGAATCTAAGA            TCCCTGCC ATTT GGCGGGGA             TTTTTTTATTTGTTT 100 54
SH05_RS22105 NONE
SH05_RS22110 4457516 .. 4457533 + -12.7  -3.44848   TTAGCGATAAAAAAA             GCCTGCC AGAT GGCAGGC              TATTTAATAACGGCG 100 268
SH05_RS22130 4462113 .. 4462138 + -11.9  -3.11619   GTGAGTTAAGTAAAA         GCCCGGTCA CATTGGAC TGACCGGGC          TTACGTGAGTTATTC  86 32
        xylF 4467144 .. 4467158 +  -4.2  -3.02144   CGTGTTGAGGCCAAC               GCCC ATAATGC GGGC               TGTTGCCCGGCATCC  46 515
        xylF 4468128 .. 4468156 + -12.4   -4.0641   AGCGAGCTGTAAGCG        TTACGCCCCAGC GCGGA GCGGGGGCGTGA        TTTCTCTCCATGCCG 100 29
SH05_RS22170 NONE
SH05_RS22175 4470919 .. 4470950 + -12.4   -4.7078   TTTGATAAAAATTTT      CTCAAAGCCGGTTA CGTA TTACCGGTTTTGAG       TTTTTGCATGATTCA 100 42
SH05_RS22180 4472214 .. 4472225 +  -7.2  -3.30124   GTGGTTGTCGGATGC                GGCG TGAA CGCC                 TTATCCGACCTACCC  64 81
        malS 4475534 .. 4475544 +  -2.4  -3.18912   GCAACAGTAACTTTT                 CCGG CTT CCCG                 TTCGTCAGTACCTCG  43 31
        avtA NONE
SH05_RS22200 4477077 .. 4477107 +  -9.1  -3.53444   CATAAACAAAGCGCA      C-TGTTCCGGCGTT GAGA AACGCCGGAAAACG       TTTCAAACAGGCTGC  73 11
SH05_RS22215 NONE
SH05_RS22220 4480272 .. 4480298 +  -5.2  -3.29144   TAACTATATTAATAA         TTCAGGTTGC TGCACAT GCGACTTGAA         TTATGACAGACATAG  55 86
SH05_RS22225 NONE
SH05_RS22230 4482060 .. 4482074 +  -2.8  -3.33696   CCGATCTCATCATCC               TCCCTT TGA AATGGA               TTAATTAAAAGGAAA  46 3
SH05_RS22235 NONE
SH05_RS22240 NONE
        sgbH NONE
SH05_RS22250 NONE
        araD 4487183 .. 4487219 + -10.8  -2.79796   CTCATTACGATCAAT    CATCGGGCTGTCGGTA ATCTC TTCCGGCAGCTCGCTG    TATCCTGCGCTCGCC  70 426
SH05_RS22265 4489463 .. 4489474 +  -2.2  -3.01001   TCAAGGTTATATTTT                GCTT CCGC GAGC                 TGTGCTTTCAGGCTG  42 521
SH05_RS22280 4490870 .. 4490881 +  -7.2  -3.30124   GTTTATGCCGGATGC                GGCG TGTA CGCC                 TTATCCGGCCTACGG  64 140
SH05_RS22310 4502319 .. 4502329 +  -3.2  -3.17763   ATAAAAAAAGATAGC                 CCTT GTG GAGG                 TTCCTGCAATGTCAA  46 27
SH05_RS22315 4503172 .. 4503182 +  -3.2  -2.56095   ATTGATAAGCTGAAG                 CGTT CAT AGCG                 TGAGTTGCCTATGCA  42 17
SH05_RS22320 4504109 .. 4504119 +  -6.8   -4.0162   AACATATGGGCCATC                 TGGG CAC CCCA                 TTTCTAATATGCAAG  69 211
SH05_RS22325 4504846 .. 4504863 +  -4.1  -3.97308   CCACCTGTTTATACA             GCATAAC TTTA GGTATGC              TTTCGTGTGTTTCAG  59 232
SH05_RS22330 4505821 .. 4505831 +  -3.2  -5.54192   TATATTAATAACTCA                 CTCT CCA GGAG                 TTTTTTTAACTTAGT  82 62
SH05_RS22345 4510199 .. 4510228 + -14.3  -3.38316   TCGTAAGTAATCCAA       TCCCACCCTCTCC ACAT GGAGAAGGTGGGG        TTAATTGCCTGATGC 100 31
SH05_RS22350 NONE
SH05_RS22355 4512541 .. 4512557 +  -2.9  -3.20494   AATTAATCAACGAAT              TGCGCAG TTT TTGAGCA              TGTTAATGATTACGT  44 408
SH05_RS22365 4513127 .. 4513152 + -14.1  -4.86731   GGATCAACAACCTAA         GGGCAATTCTC TGAT GAGGATTGCCC          TTTTCTTTACCAGAC 100 126
SH05_RS22370 NONE
SH05_RS22375 NONE
        lldD 4517190 .. 4517212 +   -12  -2.79302   CAATTTTCTGCTATC           CTGCCCCC GCACTAA GGGGGCAG           TATGCTAAACATCGT  83 199
SH05_RS22385 4517753 .. 4517770 +  -5.6  -3.18681   CATTAGATCCCATCC             CCATAC TCAAAT GTATGG              TTAATACCGTTGAAA  55 91
SH05_RS22420 NONE
SH05_RS22425 NONE
SH05_RS22430 4525423 .. 4525438 +  -3.4  -4.11235   ACCGACTCACTGACG              TATTAT GCAG ATAATA               TTTATATAATGATTG  58 389
        rfaD NONE
SH05_RS22460 NONE
SH05_RS22465 NONE
SH05_RS22470 4534220 .. 4534247 + -14.4  -2.89921   AAGAATAAACAAGTT        TAAGAAGTGAGT TAAA ACTCACTTCTTA         TCTATACAACTTAAT 100 39
SH05_RS22525 NONE
        coaD 4546306 .. 4546337 +  -7.2  -2.62043   GAAGTTAGCGTAGCG      TTTATGCCGGATGG TATG CCATCCGGCGCGCA       TGAATTACTTCTGGC  58 28
SH05_RS22555 NONE
SH05_RS22560 NONE
        slmA 4551093 .. 4551120 +  -9.8  -4.41348   CAGTTGCAGTAATAT        GACGCCGGATGA CTTT TCATCCGGCGAG         TTTCTTTAAACGCCA 100 29
SH05_RS22580 4553577 .. 4553600 +  -3.1  -5.06414   TTCCGCCTTCACAAA          TGCCGCCACT CAAAC AG-AGCGGCA          TTTTTCTTCCCCGCA  71 63
        dinD 4554775 .. 4554787 +  -4.9  -2.65354   AATAGCGATTTCACA                TAACT ACA AGTTA                TCAATTTCCCCTCCC  48 216
SH05_RS22590 4555511 .. 4555536 + -11.9  -3.89354   CAAAACCTGTGATCT         GCTGGGCAG CCAGCCAA CTGCCCAGC          TTCTTGATTTGCGCA 100 45
         gmk 4558082 .. 4558095 +  -3.1  -3.41913   CATGCCCAGTCATTT               CTTCA CCTG TGGAG                CTTTTTAAGTATGGC  49 56
        rpoZ 4558388 .. 4558398 +  -2.4  -2.83082   CGTCGTTAATCACAA                 AGCG GGT CGCC                 CTTGTATCTGTTTGA  41 32
SH05_RS22610 NONE
SH05_RS22615 NONE
SH05_RS22620 4563430 .. 4563451 + -11.5  -3.21912   GCATTTGTCTTTGTT           GCGGCGGCA CTTC TACCGCCGC            TTCATCGGTTAACCG  84 164
SH05_RS22630 4566416 .. 4566436 +  -2.6  -2.72511   GATTGCGCGTAAATC            GTGCATAA CTCCC TTATGTGC            ATTTCACGGGATGGA  41 105
SH05_RS22635 4568177 .. 4568205 + -14.5  -3.08312   GGTAAACATCAATCT        CGCCGGGTACGAC TCA GACGTACCCGGCA        TTCCATCAATAGATT 100 36
SH05_RS22650 NONE
SH05_RS22655 4572913 .. 4572927 +  -3.6   -5.0133   CGACTGGTACTTATT               TGTAAC TCA GTTATA               TTTTTTCGCCCGGTG  73 367
SH05_RS22660 NONE
SH05_RS22665 4575197 .. 4575209 +  -4.1  -3.91072   CCAGGCACCGCGCCA                CCGTT AAA AATGG                TTTCTGCCGCTTTAG  59 51
SH05_RS22675 NONE
SH05_RS22680 4576541 .. 4576554 +  -2.3  -4.45765   GACCAACGCTTCTTT               ACCTG ATAT CAGGA                TTTCTTCATTTTCAC  60 58
SH05_RS22700 4582002 .. 4582020 +    -3  -3.64812   AAGGTGCCTTTAATA             CCATCGGC AGC GCCAATCG             CTTTTTTAGGTACAA  51 297
SH05_RS22740 NONE
SH05_RS22745 NONE
SH05_RS22750 4589665 .. 4589686 + -17.3  -4.79451   TCAAGTCGCACCAAA           GGGGAGCGG GAAA CCGCTCCCC            TTTTATATTTAGCGT 100 48
        emrD 4591119 .. 4591156 +  -5.6  -3.89346   TAAGCGCACGTCACC   GCAGCATCGTCATC AGCTCCATGG GAGAACGATGCTGC    TTTATCAGATCACGC  63 38
SH05_RS22775 4592912 .. 4592922 +  -5.4  -5.31275   AGCGGGCATTATCGT                 CAGA ACT TCTG                 TTTTTTCTCCTCCAC  84 73
SH05_RS22790 4597232 .. 4597255 +  -3.8  -4.08216   CATCCAGAATAGCTT          TGGCGACCGAG GCG CTCGGTA-CCG          TTTTCGACAACGTAA  60 81
SH05_RS22810 4600704 .. 4600718 +  -3.4   -3.0701   TGGCGTAAGAGAGCG               CCGCCG CAC CGCTGG               TTGGATGAAGATTAT  43 114
SH05_RS22830 4604468 .. 4604501 + -13.1   -4.0098   GTAAAGGTTAAACGT     CGCTGCACGACGCCAC GCG GTGGCG-CGGGCAGGG     TTGTTTCCGTTCCGC 100 433
SH05_RS22840 4606770 .. 4606784 +  -5.6  -4.07568   TGGAGATCAGCAAGC               CGCAGA TAA TCGGCG               TTTTACGCGCAAAGC  65 354
SH05_RS22870 4612095 .. 4612139 +   -10  -3.34013   GCAGTAAACCAATAA TCAGTAAGCGGGCAAAC-GCG TTTA TGCTGTTTGCCCGCCCACAGA TTAATTCAGCACATA  76 26
        dnaA NONE
SH05_RS22900 NONE
        recF NONE
        gyrB 4613668 .. 4613691 -  -3.1  -3.30124   TCGTAGGCCTGATAA          GCGTAGCGCA TCAGG CACGCT-CGC          ATGGTTAGCGCCATT  47 39
SH05_RS22885 NONE
SH05_RS22880 4613031 .. 4613058 -    -4  -4.19258   ACACCCGAGGGAAAA        GGGGGATGCAAC GCGC GTTGCGTGCTCC         CTTTTTGCTTAGCGG  61 34
SH05_RS22875 4612092 .. 4612142 - -16.4  -3.57418   TATGCAGTAAACCAA TAATCAGTAAGCGGGCAAAC-GC GTTTAT GCTGTTTGCCCGCCCACAGATTA ATTCAGCACATACTT 100 23
SH05_RS22865 NONE
SH05_RS22860 NONE
SH05_RS22855 NONE
SH05_RS22850 NONE
SH05_RS22845 4606362 .. 4606383 -  -9.4  -4.87807   GCAAGATAGTAAAAA           GCCGATGC CTGACC GCACCGGC            TTTAAGAAAGTGGAT  95 80
SH05_RS22835 4603972 .. 4604026 -  -9.5  -3.24232   TGTTCCGCAAAGACA GC-TCGGTGCGCTCGCGCGTTGA AAAAAGCGAAG CCAACGCGCAAGC-CACCAATGC GGTTATTCCACCGGC  67 61
SH05_RS22825 4602927 .. 4602956 -  -2.1  -3.25169   CTAAGAAGCGAGTAA       GTACCTGCAAATC CGAA GATTCGCATATGC        TCCCTGACGGCGAGC  45 78
SH05_RS22820 4602433 .. 4602453 - -14.7  -5.82172   AGTAAGACAAAAAAA            GCCCCACCA GAA TGGCGGGGC            AAAGAGAATAGCTAG 100 41
SH05_RS22815 4600570 .. 4600604 - -11.5  -3.10071   AAATGCCAGCGAATA    CCAGGTGGAGT-ACCA TTTA CGGCGACTCCACCCGG     AAAAGAGTTAACCGA  84 33
SH05_RS22805 NONE
SH05_RS22800 NONE
SH05_RS22795 4597137 .. 4597169 - -11.3  -3.90922   AGCCGTGCTAAAGAA      TACGGACCAGCACCC AAC GGATGCCAGTCCACA      CAATTAACGTAACTC 100 205
SH05_RS22785 NONE
SH05_RS22780 4592878 .. 4592904 -  -8.7  -3.64259   AAGCAGCCTGAATAA         TGCCCGCCG GGTGATCAT CAGCGGGCA         TTATCGTCAGAACTT  75 32
SH05_RS22770 NONE
SH05_RS22765 4591596 .. 4591612 -  -2.2  -2.80016   CTTCAGCATCAATGA              CCTGAC TTCCT GTCATG              CGACTCTCTCAATAA  41 21
SH05_RS22760 NONE
SH05_RS22735 4588838 .. 4588862 - -10.7  -4.98531   TGCTTAAACGAAAAA         CCCCGCCCGG TTTGCG CCG-GCGGGG          TTTTGGAATCGTGTG 100 53
SH05_RS22730 NONE
SH05_RS22725 4586753 .. 4586780 -  -7.1  -5.75342   GGCGGGTAAAAAAAA        TACGCGCTTACC TTAAC GATAAGCGCG-A        TGTTGTTCAAGCCTT 100 47
SH05_RS22720 NONE
SH05_RS22715 NONE
SH05_RS22710 4583183 .. 4583205 -  -2.7  -3.55444   GGGTTACTCCTGAAA           TGAATACCT GCGTG AGGCATGCA           TTGTAAAAATCAGCA  48 125
        uhpT 4581739 .. 4581757 - -13.1  -5.95946   GGAATAATAAAAAAA             GCCCGGC GTCAT GCCGGGC             AAAAGTCACCAGTTA 100 44
SH05_RS22695 4578402 .. 4578428 -  -2.4  -2.65264   GCATTATCCAGATCA         TGAGTTCT CCTGCGTAATC AGAACTCA         TGATATCTGGAAACC  40 52
SH05_RS22690 4577945 .. 4577961 -  -2.9  -3.97088   GCTGATAAGACGAAA              CGGTTTC AAT GCAACCA              GTGAACGCCCTCGGC  54 14
        nepI 4576512 .. 4576526 -  -2.8  -3.70773   CCGGATATGTAAGAA               CAGCAA CAA CTACTG               ACCAACGCTTCTTTA  50 48
SH05_RS22670 4574975 .. 4574986 -  -4.4  -3.48438   AAGGAGCACAATTAA                TTGG CGGT CCAA                 AAGCCAGCATTTTGA  53 214
SH05_RS22645 NONE
SH05_RS22640 4568175 .. 4568207 -  -9.7  -2.67021   GCGGTAAACATCAAT      CTCGCCGGGTACGAC TCA GACGTACCCGGCATT      CCATCAATAGATTAC  71 37
SH05_RS22625 4563008 .. 4563027 -   -10  -4.36914   TGCTGCTCTACAAAA            CGCCGCTT TCTA AAACGGCG             CAAATTCGCCTGCAA  90 458
        ligB 4555492 .. 4555502 -  -5.4  -3.33361   CACGAAGGACACTAA                 GGTT CAA AACC                 TGTGATCTGCTGGGC  55 11
         rph 4551808 .. 4551825 - -11.3  -6.06529   TACAGACAAAAAAAA             GGCGACT CATC AGTCGCC              TTAAAAATCAGTTTG 100 33
        pyrE 4551095 .. 4551118 - -16.8  -2.77523   GTTGCAGTAATATGA          CGCCGGATGA CTTT TCATCCGGCG           AGTTTCTTTAAACGC 100 33
SH05_RS22550 4547864 .. 4547877 -  -6.7   -4.2074   TCCCGAACAGACAAA               GATCC CGAA GGATC                GCGCATAGCGGGTTA  71 38
        rpmB NONE
        rpmG 4547199 .. 4547234 - -18.6  -2.90194   ATGGGGGCAAGCAGA    TAACAAAAAACCCCGC CGGA GCGAGGTTTTTTGTTA     CATCAAAGCGAGAAT 100 40
SH05_RS22535 4546271 .. 4546290 -  -7.2  -2.57132   TTCCTGCCGGAGAAT            GTCCATCAG GCG CTGATGG-C            GAAGTTAGCGTAGCG  58 77
SH05_RS22520 NONE
SH05_RS22515 NONE
SH05_RS22510 NONE
SH05_RS22505 4540153 .. 4540165 -  -6.3  -2.50307   GAAACTCTCATTAAT                TGAGT AAA ACTCA                CTGTTTTAACGGTTT  53 40
SH05_RS22500 NONE
SH05_RS22495 NONE
SH05_RS22490 NONE
SH05_RS22485 4536231 .. 4536246 -    -4  -3.04894   AACTCCGCTTAAAAC              TGTCCT GGTG AAGACA               TGTAATTGTGGGATT  47 45
SH05_RS22480 NONE
SH05_RS22475 4534219 .. 4534248 - -10.9  -2.50354   TAAGAATAAACAAGT       TTAAGAAGTGAGT TAAA ACTCACTTCTTAT        CTATACAACTTAATC  76 15
SH05_RS22450 4528751 .. 4528780 - -13.1  -4.99035   GCATTGATATAAAAA       GAAAAAATGATGC CAAA GCATCATTTTTCC        TATCTCAGTTGGTAT 100 70
SH05_RS22445 NONE
         tdh 4526292 .. 4526309 - -12.7  -4.53303   TATCCTCAGATAAAA             GGGCTGG AATA CCAGCCC              TTGTTCGTGTTAATC 100 35
SH05_RS22435 4524852 .. 4524872 -  -8.2  -4.59109   TACACCGCCGAAAAA            CGCTGTGC CTGAT GCACCGCG            TAATCCGTTCCGTGG  88 199
SH05_RS22415 NONE
SH05_RS22410 4520497 .. 4520509 -  -5.5  -4.25283   AGGGCGGCAGCAAAA                TGGAG TGT CCCCA                GAAGCTTATAACAAT  68 99
SH05_RS22405 NONE
SH05_RS22400 NONE
SH05_RS22395 4518589 .. 4518611 - -13.4  -2.90888   ACGATGAGATAATGA           CCGGCCCG TTCTGCG CGGGCCGG           GTCATAGCGGTAACA 100 55
        cysE 4517339 .. 4517358 -  -5.6  -3.40403   TGCCTGGGACGATAA            GCGCCTGCG CCG CGCGGG-GC            TGGACTATCACGAGT  54 407
SH05_RS22360 4512155 .. 4512173 -  -8.2  -4.10855   AAAAGCCTTTCAAAA             GTAAGCAA CGT CTGCTTAC             TGCCCCTCTACCTGC  79 22
SH05_RS22340 4507374 .. 4507389 -    -4  -3.41416   TTAAAACAATCAATA              GATCCA TAAT TAGATC               TCCGGGAACGTGGAA  52 19
SH05_RS22335 4506212 .. 4506224 -  -3.3  -3.30619   AATTAGTCCTTACAA                GGAGC AAA GTTCC                ATAATCTCCCCCCTC  47 45
SH05_RS22305 4497270 .. 4497292 -  -5.5  -3.14463   AACCTGGCTGATCAA           GGCCCTCTC ACACG GAGAAGGGC           GTTTAACATAACCAC  53 81
SH05_RS22300 NONE
SH05_RS22295 4493931 .. 4493957 -  -8.1  -5.13741   TTAATCTAATAAAAA         GCACATTGTAT TCATT AAACAATGTGC         TTTTTTTAAATTCAT  95 86
SH05_RS22290 4492640 .. 4492662 -  -6.2  -4.65838   GAGATAGTTGAAAAA           GCGGCTAACA ATT TGCCAGCCGT           TGTGGAAATGATGAT  77 40
SH05_RS22285 4490920 .. 4490933 -  -8.1   -3.4252   CCGTAGGCATGATAA               GACGC GTAA GCGTC                GCATCAGGCAATGAA  68 66
SH05_RS22275 NONE
SH05_RS22270 4488904 .. 4488956 - -11.4  -2.72043   AATGCTGCGTGAAAT TCGCCACCAGCTTGCTCA-GTCGCAG CAA CTGCGGCCTGAACAAGC-GGCGGAAA GCGAAGATTAATGAT  80 33
SH05_RS22260 4486783 .. 4486820 -  -7.6  -3.15861   TATTACGGGCAGTAA   TCCCTCACGCCGGGGC TTCATC GCCCCGGCACTACGAA    TTGATATGTTCCTTG  63 334
SH05_RS22210 NONE
SH05_RS22205 4476786 .. 4476798 -  -9.1  -3.54741   TATCAGCGCCTGAAA                GCACG CGG CGTGC                TGATGGTGCCGGGGC  71 337
SH05_RS22185 4472310 .. 4472339 - -19.5  -5.07011   GAGACAAAGTAAAAA       GCCTTATCCGACT GACA AGTCGGATAAGGC        TCAAGGAAATGCAAT 100 40
SH05_RS22160 4466512 .. 4466526 -  -6.4  -2.72973   TGAAAAAGGCAGAAT               CTCTCG GCG CGAAAG               TATTTGTACAGTCTG  51 167
SH05_RS22150 4464617 .. 4464645 -  -9.6  -5.40072   CGTTCCTTAAAAAAA       TGCCCGG-TATCG CTAC CGATAACCGGGCC        AACGGACTGCACAGT 100 47
SH05_RS22145 4463111 .. 4463134 -  -8.8  -2.75039   TATAGATGTGAATTA          TCCCCCACCC GGTC AGGCAGGGGA           TAACGTTTACGCCAT  67 32
SH05_RS22140 NONE
SH05_RS22135 4462113 .. 4462138 - -11.9  -4.43477   GTGAGTTAAGTAAAA         GCCCGGTCA CATTGGAC TGACCGGGC          TTACGTGAGTTATTC 100 35
SH05_RS22125 NONE
SH05_RS22120 NONE
        glyS 4457516 .. 4457533 - -12.7  -5.64274   TTAGCGATAAAAAAA             GCCTGCC AGAT GGCAGGC              TATTTAATAACGGCG 100 44
SH05_RS22100 4455644 .. 4455663 - -13.6   -3.3482   CAACGCCGTAAGTAA            GGCGGGAA TAAT TTCCCGCC             GAAGACTCTTACTCT 100 34
SH05_RS22085 4453530 .. 4453548 -  -7.4  -3.83205   ACTGCGTAGAGTAAA             GCCCGA TAATCGC TCGGGC             TTTTACTCTTTATTG  70 35
SH05_RS22070 4448971 .. 4449015 -    -2  -2.85657   TATAAAAGCGAATTA CTGGCGTGACTG-CATTCCGC TGGT GCGGGATGCCTATCTTGCCAA CGCGCAAAACTGGGT  41 295
SH05_RS22055 4447311 .. 4447325 -  -6.4  -4.56775   ATGCCTGGGGAAAAA               CGGCAT GAA ATGCCA               TCAGAACGGAATGAA  74 160
SH05_RS22050 4445921 .. 4445938 -  -8.4  -4.88129   AAAAAGCAGTAAAAA             GGGCCA GTTAAT TGGCCC              AAATTTTACGAGTCA 100 110
SH05_RS22045 4443919 .. 4443929 -  -6.8  -3.13164   GCGCCAATCACCGAA                 TGCG GGG CGCA                 TCTTACTGCGCAGAT  59 104
SH05_RS22040 4443811 .. 4443829 - -14.6   -5.1287   TGCAGATGCAAAAAA             GCCTGCTC GTT GAGCAGGC             TTTTCGAATTTGGTC 100 36
SH05_RS22035 4443104 .. 4443115 -  -4.4  -3.35679   CCTCGTGACCTACAA                TCTG TCAA CAGA                 ATGTGAAAACGTCAA  51 191
SH05_RS22030 4441074 .. 4441104 -  -3.9  -3.86897   TGTATTGCTCACAAA       TCAATTCCCGCCC TTATC GGACAGGGAATGA       AGTATTGCTGCCGGA  58 243
SH05_RS22020 NONE
SH05_RS22015 NONE
        dppD NONE
        dppF 4437060 .. 4437078 -  -9.5  -3.76402   AGCTGATTGAGTAAA             CCGGAGC GCATG GCCCCGG             TTTTGTGAGTTAACG  81 35
SH05_RS21995 NONE
SH05_RS21990 4435128 .. 4435153 -   -14  -5.00339   AGTAAGAACGAAAAA         GGCCGCAGAG TTTCCC CCCTGCGGCC          TGGTCCGGGCGCAAA 100 76
SH05_RS21970 4430364 .. 4430378 -  -4.3  -4.56729   ACGAAAAGACTAAAA               TCACA CGTCT TGTGA               CCTTCTAAATTGATT  66 248
SH05_RS21965 NONE
SH05_RS21960 NONE
        bcsA NONE
SH05_RS21950 NONE
SH05_RS21945 NONE
SH05_RS21940 NONE
SH05_RS21935 4417596 .. 4417617 -  -4.4   -4.7657   CAAAAAGGTTAAAAA           GTTTGAGC TGGCTC GCACAAAC            CAGCACTTTTTAAAG  71 63
SH05_RS21930 4416092 .. 4416120 -   -14  -4.52669   AAGAAGTGAAATAAA        CCTGAACTCACC CAGGT GGTAAGTTCAGG        CACAGGGGTCAATTA 100 91
SH05_RS21925 4414392 .. 4414421 - -11.5  -3.14487   CAGCATATGCAAAAG       GCTGGATAAAGTG TTAC CCCTCTATCCAGC        TCATCCATAAATACC  84 73
SH05_RS21910 4412439 .. 4412454 -  -5.4  -3.09004   CCAGGCGGAAAATGA              GGCAGCT TAT AGC-GCC              AGAACCGCCGTATTC  53 16
SH05_RS21905 4410146 .. 4410170 -  -8.5  -4.32048   TAATAAGAGTGAAAA          GCCTGATGCGC TAC GCTTATCAGGC          CTGAATTTCCATACA  82 170
SH05_RS21885 4405270 .. 4405307 - -12.9  -2.59447   GGCGAACCATAATAT   TTTTACAGCCAGCCG CTAACTTC CTGCTGGCTGTAAAA    TTATCCTCTTCAGGA  91 35
SH05_RS21875 4401781 .. 4401806 - -14.1  -5.08601   TTATCGTAATAAAAA         TCGCCCAAACA TTGC TGTTCGGGCGA          TCAAATTAATTATTG 100 35
SH05_RS21870 4400147 .. 4400185 - -16.1  -3.56142   GCGATTAATAAGCAA   CCGAATGCCCAGCTGTT TTTTT AAAGGCTGGGCATTCGG   TTTTTACAACGTTAT 100 45
SH05_RS21865 4398728 .. 4398743 -  -3.2  -4.62069   TTCTTAGCGCAAAAA              CTGCCA GATT TGGTAG               GACCAAAATTTATCC  65 293
SH05_RS21860 4397564 .. 4397597 - -12.6  -2.92667   GTAACGTGTAAATGA     GAGTAAGGTTGAAC ATGAAG GTTCAGCCTTACTC      TTTCCTGCTAACCAT  93 343
SH05_RS21845 4392461 .. 4392472 -    -3  -3.88618   AAGATAATCACGAAA                TGAT AAAA ATCA                 ATTCCCTGTCAGAGA  55 472
SH05_RS21830 4390349 .. 4390396 - -10.8  -3.00259   TATAGAGATTATATA TGAACAGG-AGGAATAGCTGCTT TTA AAGAAGATATTCCGGCCTGTTCA ATATGCAAGGAAGTA  79 62
        hdeB 4389943 .. 4389973 - -14.8  -4.93595   ATAAAAATGCAAAAA       GGAGCAGCAAGATG GCT CAACTTGCTACTCC       TTTTTACTTGCACCT 100 43
SH05_RS21820 4389070 .. 4389080 -  -5.4  -3.23853   TTCGCGCAAGCAACA                 TCAG GTT CTGA                 GCTGCATTGCGAATC  52 225
SH05_RS21800 4385973 .. 4385987 -   -10  -2.92026   GATTTCAATATGACA               GGACAG AAC CTGTCC               GGGTTCGTTCTAACC  68 245
SH05_RS21770 4381685 .. 4381711 - -13.8  -3.71649   GCGTTAAATGTTAAA         GGGCTAAGAGTA GTG TGCTCTTAGCCC         TTAATTACGTTTCCG 100 44
SH05_RS21755 NONE
SH05_RS21750 4376372 .. 4376397 - -13.3  -3.86346   TTATTCTTGCAGAAA         GCAGGGTAGCG TTAT CGCTACCCTGT          TTTAGTTTTACACTG 100 33
SH05_RS21735 4373185 .. 4373202 -  -8.3  -3.14218   TACGCACCAAAACGA             GCGGGTC AGCT GGCCCGC              TTCAGATTGTGACAT  67 233
SH05_RS21725 4370026 .. 4370039 -  -3.1  -5.37345   GTTAAGTATAAAAAA               CAGCA AAGT TACTG                TTTTTTTCAACCTGT  79 219
SH05_RS21715 4368673 .. 4368687 -  -2.9  -3.00046   TAAAAAACAACAGCA               TAAGA ATTAA TCTTA               GGATAAATTTTTATT  43 134
SH05_RS21710 NONE
SH05_RS21705 4366777 .. 4366813 -  -9.6  -3.60074   GAGAAAGTCCCTAAA    GATTGTAGAGGCGT CATCAGAAC ATGCCTCTACAATC    GATTAAGAAAACCTA  78 89
SH05_RS21700 4364871 .. 4364894 -  -5.3  -4.37658   AACTGGCTGACAAAA          CGGTATCCA TCCTGT TGGATAGCG           TTTCACGCCTGTTCA  68 124
SH05_RS21695 NONE
SH05_RS21690 NONE
SH05_RS21685 4359656 .. 4359697 -  -9.5  -4.32607   CTAAAATTCAATAAA TTGCACCGATGCGTAGTCCC TAT AAGCTTACGCATCGG-GCAA TTGTATTTACGCCAT  88 32
SH05_RS21620 4344301 .. 4344323 -  -7.6  -3.27923   CTGGAAGATCAGCAA           CGTAGCCGCG ATC CGCAGCTGCA           AGTGGTAACCAATAA  62 243
SH05_RS21605 4342681 .. 4342706 -  -8.3  -3.83724   AGGAGATAAGGCAAA         CCGATCGCA ACATTGAG CGCGATCGG          TCCCCTCGCCCCTCT  75 95
SH05_RS21590 4339191 .. 4339229 -  -6.8  -2.62263   ATGGCCCGCAGATGA  CCACCGCCGAAAAGGTA CGGATT TTCCTTTTCGGCG-TGT   TTGAACTGCTGGCCT  52 72
SH05_RS21575 NONE
SH05_RS21570 NONE
        ftsX 4334995 .. 4335044 -  -5.7  -3.68292   ACCGGGAAGAGACAA CGGGGT-CTCTTTCCCTGCTACGG AAC CCATTGCAGGGAAAGAGTATAACA CGCTTTTATTATTCA  61 34
SH05_RS21560 4333913 .. 4333932 -  -7.8  -5.75538   CCCAAAAAACAAAAA            CCCCGGAC TCTC ATCCAGGG             TTCTCTGCTTAATAG 100 47
SH05_RS21555 4332500 .. 4332511 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCATGAAG  64 94
SH05_RS21540 4330447 .. 4330467 - -14.7  -2.73159   GTAACCTTTCTAAAC            CCGCCCGCA TTT TACGGGCGG            TGGGATGATCACTTG 100 34
SH05_RS21535 NONE
        livM 4328221 .. 4328234 -  -3.1  -2.97503   TTAACAGATAATAAT               GGC-TG ACT CATGCC               TGCTCTCCTTTCGCT  44 19
        livG NONE
        livF 4326715 .. 4326730 -    -9  -3.53811   GTCACCTGTCTCAAA              GGAGTC TTTT GACTCC               CTATCAATCAACGTG  73 44
SH05_RS21515 4326552 .. 4326564 -  -4.1  -2.89304   GGGAAAATATAGAAG                GTCTG AAT CAAAC                TCTACAGATTGCTCA  46 46
SH05_RS21510 NONE
SH05_RS21505 NONE
SH05_RS21500 NONE
        ugpC NONE
        ugpQ 4321342 .. 4321375 -  -9.5   -4.0162   GCCGGAGAGGAGAAA     CGGCGACATGCTGAA TCAG CCCAGCACGCCGCAG      CCTGACATTCCGTTG  81 45
         ggt 4319076 .. 4319097 - -14.5  -3.79419   TGCCCTGACAAAATA           GCCCTCTTC CCAC GAAGAGGGC            CGCTAACCTTAGTAC 100 34
SH05_RS21450 4313736 .. 4313751 -  -3.2  -2.94099   GCCTGGGATGATAGA              GGGTGA AAAT TGACCC               CTCTGTTCAAAAAAA  44 67
SH05_RS21445 4312894 .. 4312925 -   -10  -4.10429   AACGACGCGGCAAAA      CCCCGGAAGCGTAC ATCA GCACGCGACCGGAG       CGAGCGAGGAAGCCT  88 75
SH05_RS21440 4311649 .. 4311675 -  -5.2  -5.01845   TACAAGAATTAAAAA         TGTTACGGGTAA CTG TTATCGGTAACA         TTGTCCAGCCGGACA  78 106
        gntK NONE
SH05_RS21430 4309713 .. 4309736 - -10.3  -4.17048   GTTTTTCGAAAAGAA          CCCGGTAGC GTCACA ACTACCGGG           CGAACAAACTTAACT  91 35
SH05_RS21420 4307764 .. 4307781 -  -9.8  -3.15996   TATTACGCACTAACA             GGGGCG GCATCG CGCCCC              AGATTTAATGAATAA  74 44
SH05_RS21415 NONE
SH05_RS21410 NONE
        glgC NONE
        glgA NONE
SH05_RS21395 4298123 .. 4298140 - -10.5  -5.41143   GATGGCGGAAAAAAA             CGGGACC CTTT GGCCCCG              TTCTATTTATTGGTG 100 44
SH05_RS21390 4297607 .. 4297631 -  -8.5  -2.68835   GACAAACACAAAACT          GCCTGATGCGC TAC GCTTATCAGGC          CTACGTGGTTTATGC  63 143
        glpE 4295519 .. 4295536 -  -6.3  -4.01888   AGGGGACAGTATAAA             GCGTTACG CGC CGTA-CGC             CACCTCTGCGGGAAA  67 11
SH05_RS21375 NONE
SH05_RS21370 4293468 .. 4293478 -  -8.2   -3.1855   CGTTTTAACACCGAA                 GCGC GGC GCGC                 CTGGTTGGCTTTTGC  63 419
SH05_RS21360 NONE
SH05_RS21355 4289346 .. 4289368 -  -8.4  -2.76404   CGGACGTAAAAGTGA           CGCCCAGC GCGTGTT GCTGGACG           CATTAAAACTGGCGA  60 514
SH05_RS21345 NONE
        malQ 4281961 .. 4282000 -  -5.7  -2.78018   ATTCGGGATGAATTA  GTAGGCCGGATAAGACGC GTCAA GCATCGCATCCGGCAT-C  AACCGCACTCTACTT  53 35
SH05_RS21320 4277690 .. 4277720 -  -4.6  -3.78775   TGCCTGATGATGAAA       TCATGCAGCACC GACGTAT GGCGCTGCTGGA       GTTAATTCAAAAACA  58 403
        ompR NONE
        envZ 4268513 .. 4268534 - -13.7  -4.65153   TTATAGAAAGCAAAA           CGGGAGGCA CCTT CGCCTCCCG            TTTATTTACCCTTCT 100 31
SH05_RS21270 NONE
SH05_RS21265 4264680 .. 4264714 -  -7.9  -2.79023   CAAGTTCATTAATGA    GTA-TGTCCGGCAGAG AGGG CTCTGCCGGATTTTAC     GACTAATACACCTGA  61 50
        nudE 4259455 .. 4259468 -  -9.5  -4.72272   TGTTCTGATTAAAAA               GGCGC TTCG GCGCC                TTTTCAGTTTGCTGA 100 170
SH05_RS21230 NONE
SH05_RS21225 NONE
SH05_RS21220 NONE
SH05_RS21215 NONE
        hofQ 4253126 .. 4253152 -   -10  -4.05446   TTCGTTAATGATAAA         CCCGCTTCGCTC AGA GAGCGCCGCAGG         ACATGAACTGAAACC  86 362
        aroK NONE
        aroB 4251388 .. 4251406 -   -11  -3.15621   AACCTGAAGCTAATA             GACCGCTT GAT AAGCGGCC             TGACCTTTCTTGTTG  79 41
SH05_RS21195 4250006 .. 4250033 - -14.2  -3.05596   CAGCGCTTCAGGCAA        CTCCCGCAACGA TAAA CCATTGCGGGAG         ATAACCTTGATTACT 100 36
SH05_RS21190 NONE
SH05_RS21185 NONE
SH05_RS21180 NONE
SH05_RS21175 4246494 .. 4246507 -  -9.5  -5.67967   ATGAGGATAAAAAAA               CCGGG TTTC CCCGG                TTTCAGAGTGATGAT 100 176
SH05_RS21170 NONE
SH05_RS21165 4245033 .. 4245050 -  -2.8  -3.90112   GTTCCTTGAATTAAA             TATTCA TTTTTT TGAATA              TTTAGGTTGTGCGAC  52 59
SH05_RS21160 NONE
SH05_RS21155 NONE
SH05_RS21150 NONE
SH05_RS21145 NONE
SH05_RS21140 NONE
SH05_RS21135 4238823 .. 4238859 - -16.6  -3.30124   CCGTAGGCCGGATAA    GATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCGTT    GAATTTTACATCCCG 100 125
SH05_RS21075 4225718 .. 4225739 - -17.3  -3.46602   GCCGGGAGAGCAGAA           GCGCGGGCA AGAT TGCCCGCGC            GAGAAATCATTACGG 100 35
SH05_RS21070 NONE
SH05_RS21065 NONE
SH05_RS21060 4224291 .. 4224301 -  -2.4  -3.03214   ATGGCAATCAGAAAT                 CAGC GAT GCAG                 GAAATTAGCCAGCAG  42 14
        argD 4222932 .. 4222959 -  -8.4  -2.92792   ATGCAGGCTAAACCA        TCGGATAAGGCA TTCA CGCCGCATCCGA         CATCTTTTGCCTGAT  65 50
SH05_RS21035 4219409 .. 4219432 -    -6  -3.79687   ACGCCGGATAAAATA          CTATCCGGCT TCAC AACGGGATAG           TTAAGTCACGCGGCA  63 31
SH05_RS21010 NONE
SH05_RS21005 NONE
SH05_RS21000 NONE
SH05_RS20995 4211895 .. 4211909 - -12.8  -5.42259   TGAGGCGTAAAAAAA               GCGGGG ATT CCCCGC               TTTTTTGTCACTTTT 100 47
SH05_RS20985 4210599 .. 4210620 - -17.3   -5.7946   CCTGTAATAAAAAAA           CCGCCGCCT GGTC AGGCGGCGG            TTCTTAATGCTTATT 100 36
SH05_RS20980 NONE
SH05_RS20975 4209362 .. 4209380 -  -3.8  -3.40403   TTCGTTTCATCAGAA             CTGTACCA CCC TGTCACAG             GTCAGCGAGGCTTCC  49 1
SH05_RS20970 NONE
SH05_RS20965 4208624 .. 4208646 - -12.8   -4.7268   AAACACGTAATAAAA           CGTCCTCACA CAA TATGAGGACG           CCGAATTTTAGGGCG 100 81
SH05_RS20960 NONE
SH05_RS20955 NONE
        fusA 4205373 .. 4205398 - -15.5  -2.78935   ATATTCCTTACTATA         GTGCTCTCCCC TTCA GGAGAGAGCAC          GGGACTTTGGTATTA 100 51
         tuf 4204124 .. 4204139 - -11.8  -4.86939   CAACAAATGCAAAAA              GGGCGC CGAA GCGCCC               TTTTCAATTCAAAAC 100 55
SH05_RS20940 4201117 .. 4201143 - -10.2  -5.20606   AAATATGAATAAAAA         TAATGGGCTACC AAA AGTAGCCCATTG         ACAAAAAATGCGGCG 100 66
SH05_RS20935 4200816 .. 4200829 -  -3.8  -2.79579   AGTCAAAAAACACAC               TCCG TTTATG CGGA                CTCCTTAAACTCCGG  45 17
SH05_RS20930 4200245 .. 4200266 - -13.7  -3.14931   TGGATCTCTTATTAA           CCGGGAGGG TTCT CCCTCCCGA            CACGGCTCAACCTTC 100 32
SH05_RS20865 NONE
SH05_RS20860 4187431 .. 4187445 -  -8.6  -2.52795   AATTCGGCTAACTGA               GGTTCA GAT TGAACC               TGCTGTCAACTACGA  63 112
        rpsJ 4186978 .. 4186992 -  -3.5  -2.72379   TCAATCGCTCAATGA               CCTGA TTAAC CCAGG               CTGATCTGCACGTCT  44 16
SH05_RS20850 NONE
        rplD NONE
        rplW NONE
SH05_RS20835 NONE
SH05_RS20830 NONE
SH05_RS20825 NONE
SH05_RS20820 NONE
SH05_RS20815 NONE
SH05_RS20810 NONE
SH05_RS20805 4182288 .. 4182313 - -14.9    -5.252   TATGGGTAGAAAAAA         TAAACGGCTCA TTTC TGAGCCGTTTA          TTCGTATTGAGAGAG 100 50
SH05_RS20800 NONE
        rplX NONE
SH05_RS20790 NONE
        rpsN NONE
SH05_RS20780 NONE
SH05_RS20775 NONE
SH05_RS20770 4179274 .. 4179284 -  -3.2  -3.32963   ACCTCTACCTTAGAA                 CTGA AGG CCAG                 CTTCACGGGCAGCAT  47 9
SH05_RS20765 NONE
        rpmD NONE
SH05_RS20755 NONE
        secY NONE
SH05_RS20745 4176583 .. 4176612 - -12.3   -4.6645   CACAGACATACAAAA       GATTG-GCTGGCTA ATC TAGCCAGCTCAACC       CAACTTTGCAAGAAA 100 55
SH05_RS20740 NONE
SH05_RS20735 4175726 .. 4175744 -  -4.4  -4.18763   AACAAACCTGGAAAA             CGAGGCGT TAT ACGCGACG             TTTTTTCGGCGGACG  61 14
SH05_RS20730 4175076 .. 4175094 - -10.4  -3.14132   TCTCTTTGGTACTAA             GCTTTACT TGG AGTAAAGC             TCGACGATCAGGTGT  77 10
SH05_RS20725 NONE
        rplQ 4173606 .. 4173619 -  -9.5  -5.61596   ACGGGTATAAAAAAA               CCCGC CGGG GCGGG                TTTTTTTACGTTGCT 100 46
SH05_RS20715 NONE
        zntR NONE
SH05_RS20705 4172438 .. 4172454 -  -5.8  -3.54424   CGTGATTTGCTGAAA              GAGCAG AATAA CCGCTC              TTAACAAGCGCCTGA  59 26
SH05_RS20675 NONE
SH05_RS20670 4165989 .. 4166000 -  -2.2  -3.29511   CTGATTTCGCCATAA                CAAC TTAT GCTG                 AATTAAAGAAATGAT  45 40
SH05_RS20665 NONE
SH05_RS20660 NONE
SH05_RS20655 NONE
SH05_RS20650 4163662 .. 4163675 -  -2.3  -4.77173   GTCCCACAAAATAAA               CGGCT GGAG AGCGG                ATATCTGTATCTCGG  68 140
SH05_RS20640 4161211 .. 4161224 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGTACGCTTCTT  40 34
SH05_RS20635 4161085 .. 4161097 -  -6.3  -3.57309   TAAAACCTCTTCAAA                TTTGC CGT GCAAA                TTTGGTAGGCCTGAG  63 28
SH05_RS20630 4160922 .. 4160955 -  -6.7  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGTGAACCT TTGC AGGTACACTCTGAAG      TATTTTTTATTTAAT  76 52
SH05_RS20625 4157815 .. 4157828 -  -2.4  -2.78679   GGCCGCCAGGCAAAT               TCTG TTTTAT CAGA                CCGCTTCTGCGTTCT  41 84
SH05_RS20620 NONE
SH05_RS20615 NONE
SH05_RS20610 4157397 .. 4157446 - -23.3  -4.09117   TTCACCGACAAACAA CAGATAAAACAAAAGGCCCAGTC TTCC GACTGAGCCTTTTGTTTTATTTG ATGTCTGGCAGTTCC 100 28
SH05_RS20565 4146498 .. 4146512 -  -5.6  -5.21683   AGTGAAAAAAAGAAA               GACCGG CAA CCTGTC               AAAACGAAGCCGGTT  88 340
SH05_RS20505 4138446 .. 4138456 -  -2.4  -3.75024   GGCCATCATTAATAA                 CCAG ATC CAGG                 GTCGCACGCTGGTGA  51 109
SH05_RS20495 4135400 .. 4135423 -  -3.8  -4.14243   TATTCTACGTGAAAA          CGGATTAAAC GGCA GGTTAAACCG           AGTATCTTTGTGAAT  60 18
SH05_RS20485 4134031 .. 4134058 -  -8.4  -2.66316   TCTCGTATCAGACCA        GGCAGGGTAAAC AGAC ACTTCCCCTGCC         TGCATCCGATTACTC  63 35
SH05_RS20480 NONE
SH05_RS20475 NONE
SH05_RS20470 NONE
SH05_RS20465 4130322 .. 4130342 -  -2.4  -2.63208   TGTGACTCAAAAACC            CTTTGCCG GATGG CGGCCCAG            CATCTGTTTACATCA  40 33
SH05_RS20460 4126345 .. 4126394 - -12.1  -3.30124   TTGTAGGCCTGATAA GACGCACAGCGTCGCATCAGGCAA CGG CTGCCGGATGCGGCG-TGAACGCC CTATCCGACCTACGG  89 113
        tldD 4124502 .. 4124515 -  -2.3  -3.86897   GTTACGTTGTACAAA               CCTGT GCCA ACGGG                TTCCCCTCACCCTAA  51 117
SH05_RS20445 NONE
SH05_RS20440 4122228 .. 4122239 -  -2.2  -2.97029   CGTGATTAACCAAAC                TCAC GCAG GCGA                 TGGGCCATTTTACGG  42 4
SH05_RS20435 4120219 .. 4120237 - -11.7  -5.17353   ATAGCCATGAAAAAA             CCGACGC TTTTG GCGTCGG             TTTTGACTTAACTAT 100 33
SH05_RS20430 4119851 .. 4119871 -  -8.1  -2.78384   TCTTGTCCGACGATA            TTGCCCCCG GTT CGGGGGCTT            TTTTTTGCGCTAATG  61 35
SH05_RS20415 4117307 .. 4117338 - -12.5  -4.07568   GTCGTGCGCTCAAAA      CAAAAAACCGGAG TCTGTG CTCCGGTTTTTTA       TTATCCGCTAATCAA 100 41
SH05_RS20395 4112800 .. 4112810 -  -2.6  -3.59814   CCAGCACACAAAAAG                 TTTT GGG AAAA                 AAACTTTCTTGTAAC  50 109
SH05_RS20390 NONE
SH05_RS20385 4111787 .. 4111800 -  -9.5  -5.64274   TTAGCTATAAAAAAA               CCCGC CGAA GCGGG                TTTTTTCGAAAATTG 100 64
        sspA 4110811 .. 4110821 -  -3.2  -2.60797   TCCATACAGATTAAC                 TCCG GCC CAGA                 CGCATTTCACGTTCT  42 10
SH05_RS20375 4110272 .. 4110302 - -12.7  -4.77157   TTAAGTCATTAAAAA       GACAAAACAGGCC GCCTG GGCCTGTTTTGTA       TTACTTCACAACGCG 100 26
SH05_RS20365 4107634 .. 4107649 -  -2.6  -2.91276   GCTTGTCTGATAAAC              GATATA CCTT TATACC               TGTTATACCAGATCA  43 98
SH05_RS20360 4106660 .. 4106709 - -10.9  -2.89683   ATTGTAGGGTACAGA TGCGTTTATTTCCCCTCACCCG GTAGGGG CGAGCGAGGGGAAAC-AACTCA CCCGCGCTCTTGCAT  77 23
SH05_RS20355 4105081 .. 4105100 - -10.7  -2.78679   TTCCCTTAGCGAAAG            GCCCGGT ACATAG ACCGGGC             AACAGGATTAACTTT  77 33
SH05_RS20350 NONE
SH05_RS20345 NONE
SH05_RS20340 4102841 .. 4102853 -  -3.3  -3.32536   AAAGGAGCCGGAGAA                GCGCA TTA TGCTC                TGGCAGGTTTGCCTA  47 210
SH05_RS20320 4099517 .. 4099556 -  -6.2  -4.08394   ACATCTGCCGTAAAA  TCCACGCCTGACGGCTAC GCAC GTAGCCCGATGGCGAGGA   GACTTTGAAACGAAG  69 195
SH05_RS20255 NONE
SH05_RS20250 NONE
SH05_RS20245 NONE
SH05_RS20240 NONE
SH05_RS20235 4087253 .. 4087277 -  -7.2  -5.05712   ATAAATAAGCAAAAA         GCCTCG-CTGA TAAA TCAGACAAGGC          TCGACTTGCAGGCAG  89 85
SH05_RS20230 NONE
SH05_RS20225 4085524 .. 4085536 -  -4.8  -3.52102   AGTTTATCGACAGAA                CGCA GTTGA TGCG                TAGCTACACTAAACC  55 98
        rplU NONE
        rpmA 4083186 .. 4083207 - -15.9  -4.75174   TATCGAATGTAAAAA           GCCCCGCAA CGTG TTGCGGGGC            TTTCATCCGTTACCG 100 54
SH05_RS20200 NONE
        obgE 4080778 .. 4080804 - -15.9  -4.71382   ACAATTAGTCAAAAA         GAAACCCCGGC ACATG GCCGGGGCTTC         AGATTATTGACAAAG 100 177
        greA 4078550 .. 4078564 - -12.8  -4.36914   TGTTCGTTGATAAAA               GGCCGC ATA GCGGCC               TTTTTCCTTTCTTTA 100 74
        rrmJ 4077340 .. 4077354 -  -2.8  -3.40899   AACCTCTTATTACAA               CTGTGT TAA AAACAG               CGTCAGGATACTCTA  48 80
        hflB 4075320 .. 4075339 - -12.8  -5.56673   ATTGATAAGAAAAAA            CCCCGGAG CACG CCCCGGGG             TTTTCGGTACAAATA 100 61
        folP NONE
        glmM 4073068 .. 4073080 -  -9.1  -5.24129   TTCGCTGAGAAAAAA                GGCGA CAA TCGCC                GCCTTTTTAGCCAGT 100 52
        secG NONE
SH05_RS20150 4072408 .. 4072439 -   -11  -4.32436   AGACCAGGACCAAAA      CGAAAAAAGACGCT TTTC AGCGTCTCTTTTCT       GGAATTTGGTACCGA 100 32
SH05_RS20145 4070184 .. 4070203 -  -2.1  -4.68593   CTGACGATGGAAAAA            GGCGA CTCGGTGTTC TCGCC             AGATGATCGTATTGG  66 184
SH05_RS20135 4068446 .. 4068461 - -10.4  -5.60689   TCAGATAACAAAAAA              CCCCGA TAAA TCGGGG               CTTTATATAACTGAA 100 151
SH05_RS20130 4067936 .. 4067952 -  -6.5  -2.51207   CAGACTATTAAAAGT              GGGGAAC CAG GTTCGCC              TTCTGGATATTACTC  53 1
        nusA NONE
        infB 4063575 .. 4063589 - -11.4  -5.24129   TCTCCTGACAAAAAA               GGGGCT GTT AGCCCC               TTTTTAAAATTAATT 100 152
        rbfA NONE
        truB 4062144 .. 4062158 -  -2.8  -3.95071   CAAAGTGTTAAACAA               TTTACG CGA CGTTAA               GCGGCAGTATTCTAC  54 74
SH05_RS20105 4061751 .. 4061767 - -10.8  -5.03314   GTCAGCTTGAAAAAA              GGGGCC ACTCA GGCCCC              CTTTTCTGAAACTCG 100 47
SH05_RS20100 4059374 .. 4059395 - -15.1  -4.07568   CCTGCCCGGTTAAAA           GCCCCCCGC CGCA GCGGAGGGC            AAATGGCAACCTTAC 100 37
SH05_RS20095 4058354 .. 4058379 -  -7.5  -4.04023   ATTAACGAACAACAA         CGCCCTCACCC GTTA AGGTGATGGCA          ATCAAAAAAGATTAC  72 60
SH05_RS20090 4056279 .. 4056301 - -10.6  -5.82281   AAAGACAGAAAAAAA           GCCCCGAT GGTAAAA ATCGGGGC           TGTATATATTATTTT 100 69
SH05_RS20080 4054883 .. 4054905 -  -8.4  -2.98823   GCTGTCCTACATAGA           CCTGATAAGC GAA GCGCATCAGG           CATTGTGTAGGCAGC  65 67
SH05_RS20060 NONE
SH05_RS20055 4050475 .. 4050499 -  -2.1  -3.60151   CGCGGGAAAGGAGAA         CTAACGCTGG TGTTTT CC-GCGCCAG          TGGGCGATCGTTCGC  49 155
SH05_RS20045 4049792 .. 4049808 - -10.1  -2.70946   GTGGTTGATAAAGAT              CAGCTGG TTA CCAGCCG              GACACCGGACGATCT  67 63
SH05_RS20035 4048517 .. 4048527 -  -5.4  -2.65264   TGACCAGTCATAGCA                 TTCC CCA GGAA                 TAAGTTATGATAATT  49 83
SH05_RS20030 4047436 .. 4047447 -  -7.2  -3.50393   CCGTAGGTCAGATAA                GGCG TTTA CGCC                 GCATCCGACATGTTT  66 50
SH05_RS20005 4042809 .. 4042841 - -11.5  -4.07885   CATCGTGCGGTAAAA     GAAGACGTTGCGTT TTGATT AACGCAACG-CTTC      GGCACTGTTACCCCT 100 33
SH05_RS19930 4028117 .. 4028128 -  -5.8   -4.7416   GCAAAATGTTAAAAA                GAGG ACAT CCTC                 CTGCCGACTGGGAAA  81 127
SH05_RS19910 NONE
SH05_RS19905 NONE
        garR 4022167 .. 4022178 -  -7.2  -2.66316   CCTGTTACCACATGA                CGCC GGAG GGCG                 TTTCTCTTATTCGGC  58 88
SH05_RS19895 4020555 .. 4020582 -   -15  -4.07568   TCTGCCCCTCCAAAA        GCAAAAACCCGC CGAA GCGGGTTTTTAC         GTAAATCAGGTGAAA 100 442
SH05_RS19875 4016431 .. 4016451 -  -2.5  -3.54146   CGCCTGAATTAAATA            TGTAGGTAA CCG TAACCGACA            CCTGCAAGACAGACA  48 75
SH05_RS19870 NONE
SH05_RS19865 NONE
SH05_RS19860 NONE
SH05_RS19855 4012128 .. 4012139 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH05_RS22985 NONE
SH05_RS19845 NONE
SH05_RS19840 4008855 .. 4008889 - -11.5  -3.05384   TTGCCGTTCAGTGAA    GTGGAGCGGAACGACC TTAC GACCGTCCCGCTC-AC     GAGGCTTTACGCACT  83 32
SH05_RS19835 4007418 .. 4007435 - -11.3  -6.00086   AGATCACAAAAAAAA             GGTGCAC ATTT GTGCACC              CAAGGATGAAAGCTG 100 50
SH05_RS19830 4005835 .. 4005849 -  -2.8  -4.90217   CAAACATATTAAAAA               CCTTAA AAT TTCAGG               TAAATCAAGAAAATG  67 30
SH05_RS19825 4004241 .. 4004269 -  -2.3  -4.61527   AAAATTGGCCAAAAA       GCGCCAGC-CGG TGAAGC CCGTGGTGGCGA        AAGAACCTGCTCGCA  66 272
SH05_RS19810 4002452 .. 4002471 -  -9.2  -2.62425   AATTAATCTTAGAAT            TGGGGCGA TATT TCGCCCCT             TTTTATTAACAATAA  68 47
SH05_RS19745 NONE
SH05_RS19740 3990951 .. 3990975 - -12.9  -4.21922   GTATGGAAAAGCAAA          CGGCGCTTCAC ATT ATGAAACGCCG          TTTTTTATTAACAAC 100 52
SH05_RS19735 3990347 .. 3990357 -  -2.4  -3.34517   ATCGTCTGGCAAATA                 GCGC CCT GCGT                 AATTAATTGTTTAAC  45 36
SH05_RS19705 3983868 .. 3983899 - -12.2  -2.52795   AACGTGCTGAACGTA      GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA       GGTAACTCCCAATCT  81 40
SH05_RS19700 NONE
SH05_RS19695 NONE
SH05_RS19690 3982729 .. 3982744 -  -4.6  -3.76641   AGGGCAAGAGCCAAA              CCGCGC GCTG GCGCAA               CCGCTGATTGATAGC  58 184
SH05_RS19650 3970056 .. 3970084 - -14.7   -3.9344   AAGCGTAATATCAAA        TCGGATGGCGA TACGACG TCGCCATCCGA        TCTTTTTATACGACG 100 31
SH05_RS19640 3966526 .. 3966541 -  -3.3  -5.72622   TGCACAAATAAAAAA              GATCA TTGCGG TGATC               GACCGCGCCGCTTTT 100 215
SH05_RS19630 3964860 .. 3964881 - -14.5  -3.91597   ACCAGATATAGCAAA           GGCTGACGA GAAA TCGTCAGCC            TTTTTCTTTTTATAT 100 46
SH05_RS19620 3964119 .. 3964137 - -11.7  -3.85698   GGCCCTCTGCACAAA             CGCCACC TTTTC GGTGGCG             TTTTTTATCGCCCAC  95 30
SH05_RS19600 3958518 .. 3958528 -  -2.4  -2.85668   CATTCTTACACCATA                 CGCC ACC GGCC                 CCAGTCCGATTTACT  41 202
SH05_RS19580 3954189 .. 3954201 -  -3.3  -3.22909   TTAAAGGAGGAAAAG                GCGTT GCT ACCGC                TTTTGGTGCCATCGC  45 324
        folB NONE
SH05_RS19565 3952381 .. 3952394 -  -8.1  -3.30124   TTGTAGGCCTGATAA               GACGC GCAA GCGTC                GCATCAGGCGTTGAT  66 117
SH05_RS19550 NONE
SH05_RS19545 NONE
SH05_RS19540 NONE
SH05_RS19535 3944278 .. 3944297 - -11.4  -3.71649   GGCTGAAACGGGAAA            GCCCCTCC CGAA GAAGGGGC             CTTGTATAAGGAAAG  88 224
SH05_RS19510 3940894 .. 3940909 - -11.8   -4.5394   ATACAAACACTAAAA              CGGGCC ATCA GGCCCG               TTATATCAGTGCTCT 100 31
        ribB 3932932 .. 3932953 -  -5.9  -5.63236   AGGGAAAAATAAAAA           CCGAAGCCTG CTA CAA-CTTCGG           TTTCTTGATTAAGGC  95 61
SH05_RS19465 3932506 .. 3932542 -   -11  -4.40963   ATTGGTTAAAAACAA    CATCAGAAGTTGTCCA GCGCA TGGACAACTTCTGCCA    GCTTCACGAAAGCCT 100 40
SH05_RS19455 3930767 .. 3930788 - -15.9  -2.84619   GAATAAGCCACGATA           CCGGATGGC ACTC GCCATCCGG            TAATTGTTAGCCTAT 100 32
        nudF NONE
SH05_RS19425 NONE
SH05_RS19420 3925182 .. 3925196 -  -2.8  -2.93769   AAAGAAGCGTAGACA               TCAGTA GCC TTCTGA               AGCGGTATCAGGTTG  43 11
SH05_RS19415 3924608 .. 3924619 -  -4.4  -2.88544   GTTGATCGTCAGAGA                TGGT GCAG ACCA                 AGAAAATCGACGATC  46 7
SH05_RS19410 3922170 .. 3922181 -  -2.2  -4.13995   GTTCCATAAAGCAAA                CCAA TTCC TCGG                 TATGGAACCGCTGCC  56 524
SH05_RS19395 3920891 .. 3920906 -  -6.8  -3.87815   GCCCACCCGGACAAA              CCGCTA CCGG CAGCGG               GCTTGGGCTATCGAT  68 174
SH05_RS19380 3918428 .. 3918450 -  -9.1  -2.90496   CTCCCTGCGAAATTA           TTCCCGGGA ACGCG TCCCGGGAG           CGGTAACAATTACGG  68 35
SH05_RS19375 3917865 .. 3917885 -  -3.9  -4.41114   TGACCATATAAGAAA            GTGGCGC ATTAGTA GCGCCAG            TTTGAAGCAGGAATT  65 65
SH05_RS19370 NONE
SH05_RS19365 3917001 .. 3917015 -  -4.9  -5.63517   CCGGTAAAGAAAAAA               GCGAG TTGCC CCCGC               TTTTCCATTAATTAA  91 37
SH05_RS19360 3915252 .. 3915278 - -11.5  -3.10732   AGATCAACGTGAATA         GCGCCGCCGGA CGTGC TCCGACGGCGA         TAAAGGCATCAATGT  84 34
SH05_RS19355 3912662 .. 3912680 -  -5.2   -3.3251   ATATATAGCATAACA             CCCTCTGA AGG TCTGAGAG             ACTGGCATTGTACGT  55 236
SH05_RS19350 3911878 .. 3911904 -  -2.2  -3.33151   CTGGCTAAAGTAATA         CCGTGCAGGAAA GTG TTCCCCGCAAAA         ATACAGATTGCCGAC  45 41
SH05_RS19345 3910399 .. 3910431 - -12.8   -2.6993   AGAAATCGAAAGGTA      TTCCATACTCGCCC TCCTC GGGCGAGTATGAAG      ATTACGGTACCGGAT  91 27
SH05_RS19340 3908069 .. 3908096 -  -6.9  -5.73339   AGAATGATAAAAAAA        TCCCCGGTAGC GTGTCA GTTGCCGGGGA         TATTTTTTAACGTCC 100 32
SH05_RS19315 NONE
SH05_RS19310 3903296 .. 3903315 -  -2.1  -3.16288   TAAACGCCATGAAGA            TCAGGTA ATGACG TTCCTGA             TGATCCTGCCAATTG  43 148
SH05_RS19295 NONE
SH05_RS19290 NONE
SH05_RS19285 3899728 .. 3899754 - -13.8  -5.44119   TTTAGGTTAAAAAAA         TGCCCGGTTG TGAAAAG CAACCGGGCA         TCATTGTGAATTCAC 100 265
SH05_RS19275 3898125 .. 3898145 - -15.4  -3.62775   ATGACCTGTTAATAA            CGGGCGCG CGAAC CGCGCCCG            AATCAGATCAGTGAT 100 33
SH05_RS19265 3896022 .. 3896033 -    -3  -3.04322   CGTAATCCCGTAAGA                GATA AACC TATC                 AGGAGAGATATTTAT  44 24
SH05_RS19260 3895630 .. 3895644 -  -2.8  -3.14931   CGTATGTTTGATCAA               TTTTCG AGG CGATAA               CCGGCCATAAAAAAG  44 7
SH05_RS19255 NONE
SH05_RS19250 NONE
SH05_RS19245 NONE
SH05_RS19240 NONE
SH05_RS19235 NONE
        hybD NONE
SH05_RS19225 NONE
        hypA NONE
SH05_RS19215 3888844 .. 3888875 -   -13  -2.58579   GCAATCGTGCACAAT      GCCTGATGCGACGC TGCC GCGTCTTATCAGGC       CTACGAAAGCTAATC  91 42
SH05_RS19205 3885788 .. 3885824 - -16.8  -3.16668   GAATATTTTGATTAA    TCCCCGTACTGATTAT TCTTC ATAATCAGTACGGGGT    TGCTACAACATGTAT 100 40
SH05_RS19200 3884007 .. 3884041 - -13.7  -4.68994   ATCACTAGTCAAAAA     TGGAAATGCCCGATC GCCAG GACCGGGCATTTTCA     GGAAGGTTAAATCAA 100 32
SH05_RS19190 NONE
SH05_RS19185 NONE
SH05_RS19180 3880471 .. 3880481 -  -5.4  -4.22748   CATGAAGAAATGAAA                 TGAC TGA GTCA                 GCCGAGAAGAATTTC  65 61
SH05_RS19170 3878068 .. 3878096 -  -2.9  -3.35679   TGCGCGGATCTACAA        CGCGGTGTTGCAG CGG CTGCCGCACGTCG        CCCAGCGCGCAGCAC  47 148
SH05_RS19160 NONE
        glcE NONE
        glcF NONE
SH05_RS19145 NONE
SH05_RS19140 3870771 .. 3870796 - -12.6  -2.83164   GCAGTTACTATCATA         GCCCCGACAA TAAAAC TTGCCGGGGC          TTTTTTGACGCTATT  89 39
SH05_RS19135 3868737 .. 3868763 - -12.4  -3.58779   AATAATGTAAATGAA         GCCGGATGAT ATTAACG ATCATCCGGC         TTTATTGATTTACGA 100 35
SH05_RS19125 3863645 .. 3863678 - -13.1   -2.8294   TAGGCCCGATAAGCA     GGCGCATCGGGCAAA TGTG TTAACCCGGTGCGCC      TTATTTCATGCCGGA  91 73
SH05_RS19120 3862692 .. 3862708 -    -3  -3.18144   AATAAGAGTTAAAAT              GTCACT TTGAT AATGAC              GTGGTTATCATTAAA  46 36
SH05_RS19115 NONE
SH05_RS19110 NONE
SH05_RS19105 NONE
SH05_RS19100 3859632 .. 3859648 - -11.5  -3.65581   ACTAATTCTTAAGAA              CCCGCCC ACA AGGCGGG              TTTTTGCTTTTGGAT  90 143
SH05_RS19085 3856162 .. 3856183 - -11.5  -5.30616   TTACGCAAAGAAAAA           CGGGTCGCC AGAA GGTGACCCG            TTTTTTTTATTCTTA 100 38
        trmB NONE
SH05_RS19055 NONE
SH05_RS19050 3850820 .. 3850843 -  -8.8   -5.4505   TCCCTCAAGAAAAAA          TCAGGCCAGC ATTT GCTGGCCCCA           GATTGATAACAAAGT 100 2
SH05_RS19045 3850042 .. 3850064 -  -9.2  -4.12315   AAACGAAGAATTAAA           CGGCATAAAA AAG TATTATGCCG           TCTTAAAATAGAGGA  85 41
        ansB 3848830 .. 3848850 - -14.7  -4.74103   GTCTGAAGTGAAAAA            GCCCCGGCA CGA TACCGGGGC            GAGGCGATTAGTACT 100 33
SH05_RS19035 3847293 .. 3847305 -  -6.2  -4.30576   TGCGTACCACCAAAA                CGCG TCATC CGCG                TGGTTTTATGCAAGG  72 454
SH05_RS19005 3843030 .. 3843047 -  -7.7  -4.15044   CGGGCGCTCAACAAA             GGCAAAG TTGA CTCTGCC              TCTGCGGTTATTATT  76 254
SH05_RS18960 3835287 .. 3835304 -  -8.5  -4.52703   GAAACCACGAGAAAA             CTCTTGT TTTT ACAAGAG              CGCCCTTGTTCAGTC  87 296
SH05_RS18950 NONE
SH05_RS18945 3833009 .. 3833041 - -14.9  -5.71712   GTCGATATAAAAAAA      CCCTTCCGCGTCG TTAGGCC CGACGAGGAAGGG      TTGGATTTGTCACAA 100 95
SH05_RS18940 3831982 .. 3832013 - -10.8  -2.52464   CGGGTGCCGAACGTA      GGTCGGATAAGGCG TTCA CGCCGCATCCGACA       TTAATGGCACGTTTT  76 65
SH05_RS18930 3828785 .. 3828800 - -10.4   -5.5074   CAAGGTAATAAAAAA              GGTCGC CGAA GCGACC               TTTTTACCCGAAATG 100 45
        cmtB 3828063 .. 3828079 -  -3.7  -3.34534   TAGAGGAGAGAGTAA              TTATCCG CGG CTGATAA              TGTCCGCTAATTGTT  49 9
SH05_RS18920 NONE
SH05_RS18915 3825339 .. 3825367 -    -8  -2.97489   GTAACGCGAAATAAT        GGCCACGCCAGG GACAT CATTGCGCGGCC        TCCCCGATATCAACG  62 13
SH05_RS18910 NONE
SH05_RS18905 NONE
SH05_RS18900 3822937 .. 3822966 -  -3.5  -3.53343   AATCGTCCGGGGAAA       CCTTACCTGTCGCA AAC TGCGACTGATT-GG       TTAATTGTCGAACAT  51 211
        gapA NONE
SH05_RS18890 3820608 .. 3820625 - -12.7  -3.90922   AGCGCGCTGAAACAA             GGGCAGG TTTC CCTGCCC              TGTGATTTTTTACTT 100 35
SH05_RS18885 3819300 .. 3819316 - -11.5  -5.40072   TTTTGGCGAAAAAAA              GACCCGC AGA GCGGGCC              TTGAGATAAGCAGAA 100 50
SH05_RS18880 3818089 .. 3818114 - -11.9  -3.33839   AAAACTAATAAGAGA         GAGGCCAGAGA GTAT TATCTGGCCTC          AGCGTTGATTACGCA  89 34
SH05_RS18875 NONE
SH05_RS18870 3816485 .. 3816510 - -13.3  -2.64472   TATCGGGTAAAGGCA         TTAGCCCGACG AATA CGTCGGGCTAC          AAATATTATTGTGCT  93 31
SH05_RS18865 3815369 .. 3815381 -  -3.3  -4.11216   TCGCTATCTGGAAAA                TGCGC CTG GCGGA                CATATTCACCACGAT  58 97
SH05_RS18835 NONE
SH05_RS18830 3807653 .. 3807671 -  -3.2  -5.27399   CAACATATCAAAAAA             TAATATTG CGG CAATATGA             ACGTTTGCGTCGCGA  79 196
SH05_RS18825 3806310 .. 3806332 - -15.6  -5.66684   GAAGGGATAAAAAAA           CGGGCAAGTC AGT GACCTGCCCG           TTGATTTTCAGAGAA 100 47
SH05_RS18810 NONE
SH05_RS18805 NONE
SH05_RS18800 3801511 .. 3801523 -  -3.3  -3.05597   TTTATTCCTTAAAAC                CGCCT TCA ACGCG                CCACCCAACCGAGGG  44 18
SH05_RS18795 3800224 .. 3800247 - -10.3  -4.39386   TTCAAATGAGGAAAA          TCTCCCGGC GAAAAA ACCGGGAGA           TGAAAGTGTGATGGG 100 69
        gcvT 3798752 .. 3798772 -  -8.9  -3.16667   CAAAAAAGTAAATCA            CGCGACGGC TTT GCCGTTACG            CACAAAAACAGGTTT  69 2
SH05_RS18785 3798270 .. 3798311 -    -8  -3.14132   CTCTCTCCTTACGAA GAGAGTGAGGGTGAGGCA TAAATT TTCCTCACCCTGATCCTC  TCCCGCAGAAGAGGA  63 50
SH05_RS18780 3795305 .. 3795318 -  -9.5   -4.7373   TCATCTGACTAAAAA               GGCGC CGAA GCGCC                TTTAGAAAATAGTCG 100 51
SH05_RS18775 3794290 .. 3794315 - -13.4  -2.79023   TAAGTCGATGAAGTA         CCGGATGCAA TACTTG TTGCATCCGG          TCAGACAACTTCCCT  93 44
SH05_RS18765 3792383 .. 3792394 -  -4.4    -3.281   GCGTAACTGAGAATA                GTTC CAGT GAAC                 ACCTGTTAGCTAAAA  51 119
SH05_RS18760 3791581 .. 3791592 -  -7.2  -3.34962   CCGTAGATCGGATAA                GGCG TTCA CGCC                 GAATCCGGCAGTTGT  64 98
SH05_RS18750 NONE
SH05_RS18745 3789213 .. 3789225 -  -4.8  -2.72144   GGATTTTGGTGAAAT                CCAG GAAGA CTGG                GAAGCCGTCTGGGAT  46 392
        xerD 3788023 .. 3788038 -    -4  -2.87132   CGTTCTTTTCAGACA              TCACGCC CGC GG-GTGA              TGCTGTTGATGAAGT  46 10
SH05_RS18730 NONE
SH05_RS18725 3785501 .. 3785527 - -11.7  -3.30903   AAAATGCGGTGATAA        GAGCG-GGATTG TACC CAATCCACGCTC         TTTTTTATAGAGAAG  86 47
SH05_RS18720 NONE
        lysS 3782795 .. 3782812 - -10.5  -5.95539   GCTTAAATAAAAAAA             CCCCGAC ATTT GCCGGGG              TTGTGAGCATAACGT 100 46
SH05_RS18690 NONE
SH05_RS18685 3777669 .. 3777694 - -11.1   -3.1352   GGGCAATCTAATAGA         TTCTCCGCGCC TTTC AGCGCGGAGAT          TTCTTTCAGAGAGGA  79 31
SH05_RS18640 3763445 .. 3763459 -  -9.2  -3.14683   ATATCCTTTCAGTAA               CCCGGA ATA CCCGGG               CCGCTAATTCACAAA  72 29
SH05_RS18635 3761576 .. 3761601 - -11.8  -3.78329   TGTCAGTAATTTAAA         GGCCGGGTGG GTAATA CCATCCGGCC          AAAGATTGTCAAGTA 100 214
SH05_RS18605 3753147 .. 3753178 - -10.8   -4.5528   GAAAACGAAGTAAAA      GGATATCCGGCCTG AATT CAGGCCGGATTCAC       TGAGGTTATGTGTTT 100 31
SH05_RS18585 NONE
SH05_RS18580 NONE
SH05_RS18575 NONE
SH05_RS18570 3746816 .. 3746835 -    -8   -2.5076   AACTAGTATTAAGAC            TATCACTT ATTT AAGTGATA             TTGGTTGTCTGGAGA  60 55
SH05_RS18565 NONE
SH05_RS18560 3745486 .. 3745496 -  -3.2  -4.36914   CCTTTCTCGATAAAA                 GTGA CAA CCAC                 TGAGTAAACAGATCA  61 77
SH05_RS18555 NONE
SH05_RS18550 NONE
SH05_RS18545 3744408 .. 3744418 -  -3.2  -5.40072   TTTTGCGTAAAAAAA                 TACC ACA GGCA                 TTAAAAAATCATGAG  79 97
SH05_RS18540 NONE
SH05_RS18535 3743130 .. 3743143 -  -3.9  -4.25283   ATGCGCTCACCAAAA               GTTAA ATTC TTAAC                CATCTTCACGTTTTG  63 518
SH05_RS18505 3738946 .. 3738956 -  -5.4  -3.82205   GTAACAGAGCAATAA                 TGCA TTG TGCA                 AGGTAAACTAAAATA  61 180
SH05_RS18480 3733413 .. 3733427 -  -3.6   -4.8622   GTTTTCAATTAAAAA               TAAAAC AAT GTTTCA               TTTTTAAGTTAAGGA  70 185
SH05_RS18475 NONE
SH05_RS18470 3731633 .. 3731650 - -12.7  -5.29782   TACAGGTATAAAAAA             CCCTGCC ATGC GGCAGGG              TCATAAAAGTAAGAA 100 48
SH05_RS18465 3729907 .. 3729933 - -18.8  -5.30155   CTATTAACGAAAAAA         GGGCCGGATGTA CAG CACATCCGGCCC         GTGAAATCAGACGCC 100 32
SH05_RS18460 3728868 .. 3728896 -  -3.7  -2.93869   CATGATCGTAGAAAC        CCACAGCGCCG CGTCAGT CTGCGCAATGG        TACGGGCGGGGGTAG  45 248
SH05_RS18450 3726799 .. 3726810 -  -3.6  -2.76263   GTCATCATGCAACCA                GCGA CTAA CCGC                 AGTTAAAGCAATTCC  45 28
SH05_RS18440 NONE
SH05_RS18435 3721816 .. 3721841 - -16.3  -3.27475   TCCGGCACCATAAGA         TTAACGCCGGT TAAA ACCGGCGTTAA          ATATTAATGACGGCG 100 29
SH05_RS18400 NONE
SH05_RS18395 3715264 .. 3715274 -  -6.8  -3.68506   GAACAGCGATTGAAA                 TGCG CGC CGCA                 GGTTTCAGGCGCTCC  65 115
SH05_RS18390 NONE
SH05_RS18385 3713496 .. 3713515 - -10.7  -5.44119   CGGAGGGTAAAAAAA            CCGACGC ACACTG GCGTCGG             CTCTGGCAGGATGTT 100 47
SH05_RS18380 NONE
SH05_RS18375 NONE
SH05_RS18370 NONE
SH05_RS18365 NONE
        recC 3708171 .. 3708189 -  -7.4  -2.69471   CTATGTTTATATAAC             CATCAGTC CGT GACTGGTG             CGCATCATAAAGTAA  58 72
SH05_RS18355 NONE
        recB NONE
        recD 3699760 .. 3699804 - -12.9  -4.30978   GGTAAGCGATGAAAA TCGTCGGATGCGACATGCG TAACACT CGTACGTCGCATCCGGCAA TTACGTTTATTCCCG 100 32
        amiC 3696912 .. 3696925 -  -5.9  -5.24129   GTCTCCCATAAAAAA               GCGCC ATTC AGCGC                CTTTTTATCATCCCC  85 33
        mltA 3695038 .. 3695058 - -10.4  -4.93365   CCTCAGAATTAAAAA            GGGCGAGG TTATC CCTCACCC            TAAACGCATAAATGC 100 224
SH05_RS18310 3694170 .. 3694207 - -17.1  -3.59946   GGTTTAAGCACAGAA   CCGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTGA    TTGTTTAACCCTGAC 100 30
SH05_RS18295 3692050 .. 3692069 - -10.7  -2.57423   ATAGTGATTAATGTA            GCACCGC CTAATT GCGGTGC             TTTTTTTTACCTTGC  76 50
SH05_RS18290 NONE
SH05_RS18285 NONE
SH05_RS18280 3689223 .. 3689244 -  -2.9  -3.09635   ATCTGGATGAGGTAA           CGCACATTA TTTC TGATGAGCG            CCAGGTTGCAACTTC  43 100
SH05_RS18250 NONE
SH05_RS18245 3680796 .. 3680807 -  -2.2  -4.74801   GAATCGGACCAAAAA                GC-GC CAC GCAGC                TGCTGGTCGAGTTTC  68 259
SH05_RS18215 3673765 .. 3673776 -    -3  -4.41047   ATGCCTTAAGGAAAA                TTTC ATAT GAAA                 GTTAAGAATTAACAA  61 160
SH05_RS18210 3673342 .. 3673367 - -15.5  -5.84381   GCAGGAATAAAAAAA         GGGAGCACTGT ATTC ACAGCGCTCCC          GGTTCGTTTCGCAGC 100 194
SH05_RS18205 NONE
SH05_RS18200 NONE
SH05_RS18195 3671429 .. 3671447 -  -4.4  -4.93898   ATAGCAGTATAAAAA             GCGCGCCA TAG CGGCTCAC             CGTGCAACAACACAA  74 289
SH05_RS18190 NONE
SH05_RS18185 NONE
        gudD 3667186 .. 3667205 - -11.4  -3.58522   AGCATCAGTCTCAAA            CCGGCTCC AGAT AGAGCCGG             TTTTGGTTTTCTGTC  90 41
        rumA 3662851 .. 3662868 -  -5.5  -2.80816   CCTTTAGGGACCAGA             CCTGCCG AAAT CGGCAAA              TCGCAACTATTTAAC  50 32
        relA 3660563 .. 3660575 -  -6.3  -3.34534   TACAGTATATATCAA                TCTAC ATT GTAGA                TACGAGCAAATTTCG  59 43
SH05_RS18160 NONE
SH05_RS18155 3659900 .. 3659911 -  -2.2  -3.57144   TCTGTCAGGTGGAAA                CCTG TGAC CAGA                 ATAGAAGTGAGTTAG  47 46
        mazG 3658982 .. 3658997 -    -4  -4.43844   TCAGGAGTGAGAAAA              TAGCCCC TTT GGGG-TA              AATGTTTTTGACGCA  66 98
        pyrG 3657162 .. 3657186 - -18.7  -4.07562   GAAACTCCAGACAAA          CAACGCGTACC CAG GGTACGCGTTG          CCGCTCTAACTTTTT 100 44
         eno 3655775 .. 3655794 - -13.6  -5.37345   CTCAACCATAAAAAA            TGCCAGCC CGGA GGCTGGCA             TTTTTAAATCAGATA 100 50
SH05_RS18125 3653864 .. 3653904 -    -5  -4.08279   AGAGGCGACAAACAA TATAAATGAGTAGAAGTCT TTAC AGG-TTCCACCCATTTATA  ACGCTTATAAATGTT  63 44
SH05_RS18110 3648651 .. 3648662 -  -2.2  -4.55004   AAGAGAAAACAGAAA                CCAC CGTT ATGG                 GTTAGCGCACTAAAT  60 27
SH05_RS18105 3647103 .. 3647132 - -11.4  -4.21936   CTGAGAAGCCGAAAA       GGCAACGCCCCG TCATCG CGGAACGCTGCC        TGACACATTATTTTT 100 33
SH05_RS18100 3645722 .. 3645733 -    -3  -3.12668   CTTTAAACGCTAACA                GAAT GTTC ATTC                 GCACCTCCTACATTT  46 1
SH05_RS18095 NONE
SH05_RS18090 3643817 .. 3643839 -    -4  -4.60797   GGGTGACAGAGAAAA           TCCGCCAACC GCT GATTGCCGGT           GGGCTGGTGTGCGAT  70 281
        cysJ NONE
SH05_RS18060 NONE
SH05_RS18055 3636708 .. 3636733 -  -9.7  -5.45802   CTCGCAAAATAAAAA         CGCCCCCATCA TTTC TGACAGAGGCG          TTTAATTTGTCCGGC 100 46
SH05_RS18050 3633640 .. 3633662 -    -7  -4.55128   ACCGGGAAATTAAAA           GAAGATGTAC ATT GTGCACCTTC           CCTACTTAAGTAGGG  76 92
SH05_RS18045 NONE
SH05_RS18040 3631320 .. 3631334 -  -4.2  -3.04598   ATAAAGTTAGACATA               GAAAGG TTT CCTTAC               GCATTTTTGTTTGTG  47 22
SH05_RS18035 NONE
SH05_RS18030 NONE
SH05_RS18025 NONE
SH05_RS18020 NONE
SH05_RS18015 3627610 .. 3627624 -  -4.2  -3.53012   CGCGCGTCTGCGAAA               GCGG TTTATCC CCGC               TGGCGCGGGGAACTC  52 146
SH05_RS18005 NONE
        cysN NONE
SH05_RS17995 3622538 .. 3622555 -  -6.2  -3.15544   TGTTACTTTGACGAA             CCGGGC ATGGAA ACCCGG              TGGTGTCTCAGGATC  57 33
SH05_RS17990 3622077 .. 3622103 -  -4.4  -2.59191   GGATACCGCGACAAC         GCGGGCAAATGT ACC ACATTTGTCCAT         TGTTACGTATACCCA  45 112
        ftsB NONE
SH05_RS17980 NONE
        ispF NONE
        truD NONE
        surE NONE
         pcm 3617947 .. 3617961 -  -2.8   -4.7254   ATCCCCCAGGAAAAA               TTGGTT AAT AACCAG               TGACATAATTACCGT  64 133
        nlpD 3616730 .. 3616742 -  -3.3  -3.35996   TATTCTGACTCATAA                GGTGG CTC CTACC                CGTGATCCCTTGACG  47 73
SH05_RS17950 3615693 .. 3615716 - -14.6  -4.52857   ATTGTGCACAGAAAA          GGCCAGCCTC GCTT GAGACTGGCC           TTTCTGACAGATGCT 100 44
SH05_RS17920 3609341 .. 3609354 -  -3.1  -4.76193   AACGACAACATAAAA               TATGC CATC GCACA                TGCAGATTATCCGGG  71 314
SH05_RS17905 3605601 .. 3605626 - -15.5  -2.79968   GATTTAACTGCAAAT         TGCCGGACAGA TCTG CCTGTCCGGCA          TACTATTCATGAGGT 100 28
SH05_RS17870 3599114 .. 3599128 - -11.4  -3.57263   ACGCCCATCCCCAAA               CAGGCG TAA CGCCTG               CAAAACGGGCAAAGC  89 47
SH05_RS17860 NONE
SH05_RS17855 NONE
        hycD 3595668 .. 3595686 -  -3.7  -2.71263   AACTCTCTTTAATCA             CGCCGCC AGCAA GGAGACG             AACGCTAAAAATGCA  44 4
        hycE NONE
SH05_RS17840 NONE
SH05_RS17835 NONE
SH05_RS17830 NONE
        hycI 3591653 .. 3591677 - -12.1  -2.57136   GCACGAACCATGAAG          GCCCGATAAGC GCA GCGCATCGGGC          AATTTAGCATTTGGC  83 97
SH05_RS17810 3587387 .. 3587417 -  -7.7  -4.77157   GTAATGCAGGAAAAA      CGATGTCATCGACA CTAG TGACGATGACAT-G       TGATGACAATGTTTA  91 38
SH05_RS17805 3586625 .. 3586683 -  -6.7  -3.21099   TCCCGCCATCATGAA TTGCGTAACCCGC-CCTGCCGGACACGAC AGC GTCGCATCCGGCAGTCACAGGTCG-GCGA TACCGCCCGCTCCGT  59 96
SH05_RS17800 3584243 .. 3584274 -   -13  -3.04715   TACTGTGCCTAAAAT      GTCGGATGCGACGC TGGC GCGTCTTATCCGAC       CTACGGGGACGCATG  95 100
SH05_RS17785 3579583 .. 3579600 -  -5.5  -4.15044   CGCTTGCTGAATAAA             GTGCATC ATCT GATGCGC              CGTGACGATGCCATC  67 376
SH05_RS17745 3573623 .. 3573667 -    -5  -5.28778   AGGATTCAGAAAAAA GCTGATTAGCCAGAGGGAAGC TCAC GCCCCCCTCTTGTAAAT-AGC TACTGTACTCGCGCC  82 25
SH05_RS17740 3573005 .. 3573024 -    -8  -2.84098   CTGTTGAAGCAATTA            TACTGTAT GCTC ATACAGTA             TCAAGTGTTTTGTAG  61 26
SH05_RS17730 3571896 .. 3571910 -  -2.8  -2.56715   ATCGCCATTAATTCA               CTGATC AGT GATAAG               CTGTCAAACATGAGA  41 115
SH05_RS17725 3571501 .. 3571530 -  -8.5   -5.1925   TTACAACTTAAAAAA       GCAAAAGGGCCGC AGAT GCGACCCTTGTGT        ATCAAACAAGACGAT 100 193
        recX 3570878 .. 3570922 -  -7.3  -3.56675   CAAGCTAACGAAATA TC-GCCACCAGCTCCAGCGTGT CTTA AC-CGCCGG-GCTGGTAACTGA AAAGTGGGAATAAGA  66 79
SH05_RS17710 NONE
SH05_RS17705 NONE
SH05_RS17700 NONE
SH05_RS17695 3567174 .. 3567184 -  -5.4  -3.27029   CCGTATCAAGTAAGA                 GATG GTG CATC                 CGGGAGGATTACTCG  55 151
SH05_RS17690 3567033 .. 3567043 -  -5.4  -3.28487   CCATATCAAGTAAGA                 GATG GTG CATC                 CGGGAGGATTCGAAC  55 17
SH05_RS17685 3566759 .. 3566769 -  -5.4  -3.28487   CCATATCAATTAAGA                 GATG GTG CATC                 CGGGAGGATTACTCG  55 152
SH05_RS17680 3566365 .. 3566383 -    -6  -3.94933   GCAAGTCGAAAAATA             TGACGCTA CTT TAGCGTAA             TTGCTTGATTTTGTC  66 263
SH05_RS17670 3565766 .. 3565785 -  -3.6    -3.543   CGAGAAAAGCGATAA            CGCTTCACT CAC AGC-AAGCG            AACATCCACGGCGTC  51 14
SH05_RS17665 3565334 .. 3565362 -  -2.4  -2.79831   GTAATGGTGACCATA       TGTGCAGGC-CTA CAAT TAGTGCCACCACA        TCATGCCCTGAACGG  41 12
SH05_RS17660 3563565 .. 3563577 -  -2.6  -3.69283   GAAGCTATCTAACAA                CGGC ATTTA GCCA                CCTCCGGTAATTTTT  50 168
SH05_RS17655 3563002 .. 3563021 - -12.2  -3.50422   ACTAAGTACAACTAA            GCCAGTTC ATTT GAACTGGC             TTTTTTCAATTAATT  91 59
SH05_RS17580 3548221 .. 3548231 -  -8.2  -2.66272   CGGCACGCAAAGTTA                 GCCC GTC GGGC                 TGGATAAAAAATCTG  59 281
SH05_RS17570 3546886 .. 3546923 -  -8.4  -2.59039   AACGAGCTTGAGAAG   CGACGCCGGACG-CGCC CTAGC AGCGACATCCGGCCTCA   GTAATTAGATCAGGA  63 30
SH05_RS17555 3545672 .. 3545691 - -12.8  -3.29649   AGTGTAGCAGAGGAA            CGCGGCGC GTTA ACGCCGCG             GGGATGAGCACAGGT 100 41
SH05_RS17550 3545115 .. 3545136 -  -4.3  -3.07816   GCGCCAGTGAGTTAA           TGCGCCAGC ATTT ACTGACGCC            AATTCCCATTATCCA  48 63
SH05_RS17500 3534384 .. 3534407 -  -4.5  -2.63164   CCACATGTAAGCAAT          TTGCCCGCT TGGCAT AGCAGGCAT           TTTTTCCAGGTACTT  48 217
SH05_RS17490 3533220 .. 3533233 -  -5.3  -3.87815   TTTGACTCTGACAAA               GATGA AATC TCATC                TATTTTGTTTTCATA  61 158
SH05_RS17485 3532329 .. 3532352 -  -7.4  -3.77491   CACCAAATAAATCAA          GGGGTTACAT GAAA ACGTAGCCCC           TTTTTCTTTGGTAGT  70 148
SH05_RS17480 3531706 .. 3531723 -  -4.2  -3.45027   ACCGCTCATCAAAGA             CATCAT GATGAA ATGATG              ATATTCCGCATAAGA  52 204
SH05_RS17470 3526953 .. 3526968 - -10.4  -3.92324   CCTGGTAACATGAAA              GCCCAC AGAT GTGGGC               TTTTTCGTTGATGGT  89 40
SH05_RS17440 3521011 .. 3521028 -  -5.5  -4.06904   GTATCTAATTACAAA             GTGACAG AGAG CCGCCAC              GCCAGCGCGGCCAGA  63 1
SH05_RS17435 3520479 .. 3520503 -  -5.5  -3.84406   TCCCTACCATAACAA          CCCTGATTGCC TCC GGCGGTCGGGG          GTTTCTTTTTTCTCC  61 199
SH05_RS17390 3514008 .. 3514018 -  -2.6   -3.3095   AGACATCCGTGACAA                 TTTT GCG AAAA                 TTAAGGAGATGTTAT  46 357
SH05_RS17385 NONE
SH05_RS17380 3510029 .. 3510053 -  -7.2  -2.87325   ATTTTTTACAACAAT          GGCCTTTC TTATGGCTG GAAAGGCC          TGATTTGTTTGTATT  59 160
SH05_RS17360 3506243 .. 3506270 - -12.8   -2.8733   TGTCGGATAAAATAT        TTATCAGCCCAG CTCT CTGGGCTGATAT         TTCTAAAAGATCGCA  91 236
SH05_RS17345 NONE
SH05_RS17340 3502815 .. 3502831 - -12.3  -5.10077   AAAGACGTTAAAAAA              GGTGCTC AAT GAGCACC              TTTTTTCTGTCTGTT 100 39
SH05_RS17320 NONE
SH05_RS17315 3498904 .. 3498929 - -14.7  -4.45544   GCGGAGTAACGAAAA         CGGCCCGGCAT TCGC ATGCAGGGCCG          TGAATTATTACGAAA 100 48
SH05_RS17300 3495046 .. 3495078 -  -9.2  -4.63218   CTTGTGTGAATAAAA     CAACCGGACCCCATC GAGG AACGGAGTCCGG-TG      TCATATTAAAAGCCC 100 218
SH05_RS17295 NONE
        rimM NONE
        trmD NONE
SH05_RS17280 3492968 .. 3492989 - -11.5  -5.51046   CAAACAGATAAAAAA           GGGCCAGCC AATT GGCCAGCCC            TTCTTAACAGGATGT 100 56
SH05_RS17255 NONE
        tyrA 3487749 .. 3487778 - -15.1  -4.28361   CCAACCTGATGAAAA       GGTGCCGGATGAT GTGA ATCATCCGGCACT        GGATTATTACTGGCG 100 32
        rluD NONE
SH05_RS17220 3483053 .. 3483067 -  -5.7  -3.83998   CTACTGGAGATTAAA               TGAGG TCATC CCTCA               ATTATTCAAGGTTAT  63 98
SH05_RS17215 3480410 .. 3480427 - -12.7  -5.04597   ACTTATAGACAAAAA             CGAGCCC CGAA GGGCTCG              TTTTATCATTTACTG 100 35
SH05_RS17210 3478419 .. 3478432 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGTACGCTTCTT  40 34
SH05_RS17205 3478147 .. 3478158 -  -4.4  -4.09503   AAATATATCAAACAA                GACT TAAC AGTC                 TGTTTTGAGATATTG  61 73
SH05_RS17200 3475029 .. 3475042 -  -2.4  -2.78679   GGCCGCCAGGCAAAT               TCTG TTTTAT CAGA                CCGCTTCTGCGTTCT  41 84
SH05_RS17195 NONE
SH05_RS17190 NONE
SH05_RS17185 3472926 .. 3472942 -  -9.4  -3.51032   ATCCTGTAATCACAA              CCCCGT CCTGT ACGGGG              TTTGTTTTTTGGAGG  76 368
SH05_RS17155 NONE
SH05_RS17150 3466294 .. 3466321 - -13.4   -3.5394   AAATTTGCGGGGAAA        TGCCGGATGGCA GAGT TGCCACCCGGCT         GATTTATCAGGCTTT 100 32
SH05_RS17140 3464857 .. 3464880 - -16.8  -5.65513   TATTAACGAAAAAAA          GCGGAAGAGG TCGC CCTCTTCCGC           TTAGTAACTTGCTAC 100 48
SH05_RS17130 3463250 .. 3463269 -  -7.1  -3.80625   TGTCGACAAGTTAAA            TGCCGGG TTTAAT CCCGACA             TTATTTTTATCCAGC  70 32
SH05_RS17115 3460673 .. 3460699 -  -6.6  -3.62775   ACCATGCTCCAACAA         GAAATAGACGAA TAT TACGCCCATTTC         CGCGTCTCAAATAAT  63 190
SH05_RS17105 NONE
SH05_RS17100 NONE
SH05_RS17095 NONE
        rseB NONE
SH05_RS17085 3456149 .. 3456166 - -11.3  -4.32607   GCAAAATGCAACAAA             GCCAGTG AAAT CACTGGC              TCGCGTCTTCCGAAG 100 18
SH05_RS17080 3454126 .. 3454147 -  -5.1  -2.68015   GGCAATCACCAGAAT           CAGGGCAAA CATA TTCGCCATG            CCAACTCCTAAGGGT  49 40
SH05_RS17075 3453127 .. 3453159 - -21.5  -4.07877   TTATCTCATAAATAA      TTCACGTTGTCGCCA TAA CGGCGACAACGTGAA      CGAAGATGGCTATTA 100 38
         rnc NONE
SH05_RS17065 NONE
        recO NONE
SH05_RS17055 3449823 .. 3449838 -  -2.6  -2.71924   TATCCGTGCCTAAAC              CTAATA TTGC CATTAG               CCACGCGCTTCCAGC  41 22
        acpS 3449394 .. 3449430 - -11.6  -4.83759   AATTAAAGTTAAAAA    GTAAAACCCCCGTTCC TTACC AGTTCGGGGGTTTTAC    TTTTTAAAGAGAACG 100 50
SH05_RS17040 NONE
SH05_RS17035 3448905 .. 3448934 - -15.1  -3.78022   TTTATAGTTATTAAA       GGTGCGTCCGACTG GTT CA-CCGGACGCACC       TTAAGTACGTTTCCT 100 45
SH05_RS17020 NONE
SH05_RS17015 3445792 .. 3445808 -  -5.1  -3.28712   CCTCGCTGCGTACAA              TATGGGC TAT GCGCATA              TGCTGGATGCCCGCG  54 408
SH05_RS17005 3440415 .. 3440432 -  -8.4   -5.4492   TACAGACACAAAAAA             GCTCCC GGAGTT GGGAGC              TTATGATAGTGGTTG 100 86
SH05_RS17000 3438482 .. 3438496 -  -2.8  -5.01553   AACTGACAAATAAAA               TAGCCT GAT AGGATA               GGCTGTTAGCATTAT  70 37
SH05_RS16995 NONE
SH05_RS16990 NONE
SH05_RS16985 3435823 .. 3435837 -    -5   -4.3534   CGTGAAGCAGGAAAA               CATTCA TTA CGAATG               CTTTGGCCCGCATAA  67 95
SH05_RS16975 3432913 .. 3432930 - -11.3  -4.00066   GCGATAACGTAGAAA             GGCTTCC CGAA GGAAGCC              TTGATGATCATAAAC 100 186
SH05_RS16965 3428283 .. 3428296 -  -2.5  -3.53012   CGCGTGCCGCTCAAA               TATTA CAGT TAATA                GGGTTTAGTGAACGC  48 30
SH05_RS16960 NONE
SH05_RS16955 NONE
SH05_RS16950 3424625 .. 3424660 -  -3.8  -3.30452   TAACAATACGATTAA    TTTTCATCCCTGCCGC ACCC GCGCCAGGGGCGTTAA     GGTTTAGCGTTTCGC  49 29
SH05_RS16945 NONE
SH05_RS16940 3422612 .. 3422643 - -14.4  -3.44848   CGGCGTTAGGAAAGA      TGCCGGATGCGGCG TGAA CGCCTTATCCGGCA       TTTAATAAATTACAG 100 35
SH05_RS16905 3416837 .. 3416856 -  -3.6  -3.23855   TGTTGCAAAAATAAT            GCGTAA TTATGCCG TTACGC             TTGCCAAACGTTCCT  49 12
SH05_RS16900 3415536 .. 3415549 -  -2.4  -4.13282   AGCAGATCCGCAAAA               TGCT CGAATC AGCA                TGAGGGAACAACTTT  55 20
SH05_RS16880 3411388 .. 3411402 -  -7.8  -3.30124   CTGTAGGCCTGATAA               GACGCA TTA CGCGTC               GCATCAGGCAACGGC  66 43
SH05_RS16875 3410381 .. 3410404 -  -2.4  -2.91593   CATTGCTCTATAAAC          TCCGTACATC ACTC AATGCAAGGA           ATCAGGCTACCGGCT  42 101
SH05_RS16870 NONE
SH05_RS16865 NONE
        iscA 3408358 .. 3408384 -  -8.7   -4.6951   ATCAGGTAAAACAAA        CCCCACGCGCAG GCGA CCACG-GTGGGG         TTATCGGTATGCGCA 100 41
        hscB 3407768 .. 3407779 -  -2.2  -2.78867   CTAATTTGTAATAAG                GCCA TGTT TAGC                 TTCCAGAAATTAAAA  41 35
        hscA NONE
SH05_RS16845 NONE
SH05_RS16840 3405219 .. 3405238 - -12.8  -4.07568   TCCTTCTTTGTAAAA            GGGCCGCC AGTT GGCAGCCC             CAGGATTTTTCCGCT 100 160
SH05_RS16835 3403883 .. 3403894 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCATATTA  64 43
SH05_RS16830 3402906 .. 3402920 - -11.4  -4.10744   CGAGGTAAATAATAA               CCGGAG TCT CTCCGG               CGACAATTTACTGGT 100 99
SH05_RS16820 NONE
SH05_RS16815 3393813 .. 3393826 -  -2.5  -4.09511   AACATTTTTTTAAAA               TAAAA TGAG TTTTA                GCAACAATCAGGGAC  57 49
SH05_RS16810 3393178 .. 3393209 -  -8.7  -5.04249   GGTTGAAAAAAGAAA     CG-CCCCGG-TGAGC GGCT GCTCGTCCGGGGGCG      CTGCATTGTACAAAT 100 86
SH05_RS16805 3391924 .. 3391961 -   -18  -4.42653   ACTTCATTCATAAAA   CATTACGCCACGG-TAC ATAAA GTAACCGTGGCGTAATG   GCTATCAGACCGCTT 100 30
SH05_RS16800 NONE
SH05_RS16795 3389494 .. 3389514 - -13.3  -3.00298   GGGTTCAATCATACA            CGGGAAGCG AGG CGCTTCCCA            TCACGTTATTATTTT 100 34
        hisS NONE
SH05_RS16785 NONE
SH05_RS16780 3386260 .. 3386291 - -13.8  -3.90048   TCGTTGTTAAAAACA      GGAAAACGGCCCCT GTCC AGGAGCCGTTTTCA       AAGTGAACGACAGAG 100 45
SH05_RS16775 NONE
SH05_RS16770 3384362 .. 3384374 -  -7.7   -2.9296   GAAATGCTAACCACA                CGTCT GGA AGACG                GCTGGATAGAAAGTG  58 87
SH05_RS16760 3381412 .. 3381434 - -14.9  -4.33674   AACAGATAATATAAA           TCGCCCGAC ATGAA GTCGGGCGA           AGAGAATCAGGAGCC 100 32
        guaA 3379747 .. 3379766 - -12.2  -5.47159   CTTGAAGATAAAAAA            CCCTCTGT AGTA ACAGAGGG             TTTTGTTCATTCATA 100 54
SH05_RS16735 3377903 .. 3377916 -  -3.9  -3.34629   ATATGAAAGTACCAA               TTGAT ATAT ATCAA                ACAAAATAACCCTGA  49 66
SH05_RS16730 3375496 .. 3375530 -  -9.2  -3.02043   AATCGCCGCTTAATA     CTTTGCGGGCCGAC GAGAAAT GTCGGCCCGCATTA     TTCAGGCACTTTCGC  71 27
         upp 3369046 .. 3369064 -   -11  -5.81412   TTTACTCAAAAAAAA             GCCGACTC TTA AAGTCGGC             TTTAATTATTTTTAT 100 44
SH05_RS16700 3367664 .. 3367714 -  -2.4  -2.72649   AGTTTACCACAGAAT CCCATGATGTTTGAACCGGGCAGC AAC ACTGCCCGGTCGGTACATTATTTG TCTGTTATATCCGCG  40 19
SH05_RS16695 3366492 .. 3366504 -  -2.6  -4.86731   CCTGCTGAAAGAAAA                CGGC GTGGA GCCA                GAAGTGGTGCTCTAC  68 433
SH05_RS16680 3363624 .. 3363653 - -16.5  -4.62872   AGGAACCCTGAAAAA       TCAGCCCGGCGAA ACAG TTCGTCGGGCTGA        AGATTATTCTTGCGC 100 29
SH05_RS16605 NONE
SH05_RS16600 3346641 .. 3346660 - -11.4  -5.34555   TCATATCAGAAAAAA            GGGCCGGA TGAT TCCAGCCC             TGTATTTTTACTTGC 100 33
SH05_RS16590 3345730 .. 3345749 -  -2.8  -2.75074   TGCACGGCAAGATGA            TGAACAGA AAAA TCAGTCCA             GCTGTACACCCAGGC  42 18
SH05_RS16585 3344716 .. 3344732 -  -2.3  -3.75153   GCCCCGGAAGTTAAA              TGCTTTT ACC AAAAGTA              TTGCATTGTGCCGGA  51 4
SH05_RS16580 3342596 .. 3342610 -  -4.2  -2.71055   TTGAACAACAAAATG               GTCATG TTT CATGGC               GAACTCCTTAACTGA  45 96
SH05_RS16575 3341829 .. 3341881 - -14.8  -2.57931   CGTAGGCCGGATAAG GCGTTAACGCCGCATCCGGCAATG GTGAA CGATGCCTGATGCGACGCTCACGC GTCTTATCAGGCCAG 100 53
SH05_RS16540 NONE
SH05_RS16535 NONE
SH05_RS16530 3330157 .. 3330179 -  -4.1  -3.74077   GTTCAGAGATGGAAA           TTACCCTGC AAGCG GCAGAGAAA           TTAGCAGGAGAAGGT  56 417
SH05_RS16515 3324890 .. 3324918 - -12.6  -3.66378   TATATTGCAGCTAAA       CTGCTTACCCTGA ATAT TCAGGGTAAGC-G        TGAGAGTTAAAAAAA 100 42
SH05_RS16510 NONE
SH05_RS16505 NONE
SH05_RS16500 NONE
SH05_RS16495 NONE
SH05_RS16490 NONE
SH05_RS16485 3320961 .. 3320986 -    -9  -3.15182   ATGAAAAAGGAGAGA         GCGTGACGCC CGAATC GACGTCACAC          AGGGTGATTACAGGT  69 33
SH05_RS16480 NONE
SH05_RS16475 3319190 .. 3319206 -  -8.7  -3.55444   CTGTTACTCCTTAAA              CAATGCG AAA CGCATCG              ACTAATACACAGCGA  73 4
SH05_RS16470 NONE
SH05_RS16465 3316993 .. 3317038 -    -9  -3.53811   CGGATGCGGCGTAAA CGCCTTATCCGCCCTACATG TGCAAT CCCGTAGGCTGGATAAGACG CGGCAAGCGTCGCAT  73 148
SH05_RS16460 NONE
        eutA 3314310 .. 3314327 -  -4.1  -2.58544   CTTTAGTTTCATAAG             TCGTTCC CTCA GGAAGGA              AATGCGAGTGATTTC  45 16
SH05_RS16450 NONE
SH05_RS16445 3312020 .. 3312036 -  -2.1  -3.89336   CGAATCAAATCTAAA              GCTGGCA TGA TGCCTCC              TTATCGGGTCATGTT  51 26
SH05_RS16440 NONE
SH05_RS16435 NONE
SH05_RS16430 3309515 .. 3309535 -  -6.7   -3.6682   GTCGAGCGACGGAAA            GCGATGGCC TAC GGCGAGCGC            GAGCGCAATTTCCAG  63 247
SH05_RS16415 NONE
SH05_RS16410 NONE
SH05_RS16405 3306194 .. 3306212 - -10.3  -4.20868   TCCTGAAAATAATAA             TGCCACG CAATC CGTGGCA             TTGTTGAGCGCTATT  91 81
SH05_RS16400 3305040 .. 3305067 -  -8.4   -5.2204   CAGAAGTAATAAAAA        GGCCAGTCAGTA ATGT TACTGGCTGGTC         TGAGAGTGCTGACAA 100 231
SH05_RS16380 3300275 .. 3300287 -  -5.5  -3.06696   CTCCTTGTTAATACA                GAGCG TTA CACTC                CATTCCCTCTGAAAA  52 117
SH05_RS16375 3299423 .. 3299446 -   -11  -3.93038   TAGTTCAAGACGAAA          TCCTCCCCAC AAAT GCAGGGAGGA           AACAGAGGTGAATCA  90 38
SH05_RS16370 NONE
SH05_RS16365 NONE
        cysW NONE
SH05_RS16355 3295295 .. 3295322 -  -9.1  -4.72272   CCTTGCCATTAAAAA        GCCCGGA-TCGC GGGAA GCGCCTCCGGGC        GTTTAACATTCACTC 100 47
        cysM 3294147 .. 3294205 -  -2.3  -5.06103   ACAACTGTTAAAAAA GTGCGCTTTGTTTATGCCGGATGCGGCG TAAA CGCCTTATCCGGCCTACA-AAATCGTGC TAATTCAATATATTG  68 119
        pdxK 3291990 .. 3292007 - -12.7  -4.65895   TGCCGCAGTGAAAAA             TGGCGCC CATC GGCGCCA              TTTTTTTATGCTTCC 100 31
SH05_RS16305 3285826 .. 3285842 - -10.8  -4.67904   CATCAATGCTAAAAA              CCCCCG ACAAG CGGGGG              TTCGAAGAGGAGTTA 100 57
        ligA NONE
SH05_RS16295 3283532 .. 3283565 -    -3  -3.12505   ACGCCAGACCGAACA     GTTACAGGCGCAGC AGGAAA GCAGCGCCGATAAA      GCTTAAAGCGGACGC  46 28
SH05_RS16285 3281238 .. 3281262 -  -7.1  -2.84999   ATCAAACCTATTACA          CTGGCGACA ACGGCTA TGTCGCCGG          CTGGGTTGCAGGTTA  54 320
SH05_RS16275 NONE
SH05_RS16270 3278325 .. 3278347 - -11.3   -4.4648   ACCTTTATCATAAAA           GCAGCTCTG AAGAG CAGAGCCGC           GAATCCTTTTAATGA 100 34
SH05_RS16265 3278124 .. 3278140 -  -2.3  -3.48772   AAGTGCTCCATATAA              TAAATAC ATC GTATTAA              ATTATCATGGCATAA  47 30
SH05_RS16260 3277122 .. 3277136 -  -9.2  -5.17576   CACCAATGTAAAAAA               GCGCCC TAA AGGCGC               TTTTTTGCTATCTGC 100 109
        gltX 3274841 .. 3274863 -   -12  -5.73978   AGCATAAATAAAAAA           CGGCAGGATA TTA TCTCCTGCCG           TTTATCTTTTTACAC 100 46
SH05_RS16220 3273765 .. 3273779 -  -4.3  -2.50816   CGTTTACGTACCAAG               TTTGC TGGGT GCAAA               ATTTGGTGGAGCTAA  45 29
SH05_RS16215 3273639 .. 3273658 - -11.4  -5.43414   AGCAGAGACAAAAAA            CCCCCGCT TTGC AGCGAGGG             TTGGAAATTTGGTGG 100 35
SH05_RS16210 3271094 .. 3271120 -  -3.6  -5.34365   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  80 175
SH05_RS16195 3266979 .. 3267010 -   -13   -2.6627   CCAATGGAGCACAAT      GCCTGATGCGACGC TAGT GCGTCTTATCAGGC       CTACAAACCGGCTCT  91 110
         glk 3264051 .. 3264074 - -11.8  -2.81922   TATGATTTAAAAGAT          TATCGGGAGA GTTA CCTCCCGATA           TAAAAGGAAGGATTT  83 39
SH05_RS16170 NONE
SH05_RS16165 NONE
SH05_RS16160 NONE
SH05_RS16155 3260112 .. 3260127 -  -3.3   -3.0644   ATTGAATCGTTAACA              TAACC GCTCCG GGTTA               ATCAGGAGATCATCT  44 35
SH05_RS16150 3257265 .. 3257276 -  -5.8  -3.02144   GTAGCGTGGTGAATA                TGCC GCCG GGCA                 ATTCGCAGCCGCGCG  53 366
SH05_RS16130 3252642 .. 3252661 - -13.6   -4.8622   CTGTGCAATGAAAAA            CAGGAGCC ATCA GGCTCCTG             TTTGCATTTCTGACG 100 48
SH05_RS16120 NONE
SH05_RS16115 3250446 .. 3250456 -  -5.4  -5.15381   AAGAGACTGAAAAAA                 CATC AGC GATG                 ACGACCACACACTCT  83 154
SH05_RS16105 3249303 .. 3249339 - -11.9  -3.92542   GCGAGCGCCAAATAA    TTTTATGACCACAAC CTGTCGT ATTGTGGTCATAAAA    AATTGTCGGCTGGAG 100 80
SH05_RS16100 3247606 .. 3247624 -  -4.4  -2.94161   GAAATTTTTATAAAT             TGGGAGCC AGA AGCCCCCG             TTAATATCAGATGGC  47 32
SH05_RS16095 3245831 .. 3245871 -  -3.1  -3.30441   TAGTATTTCCGATAA  GGGTCCCCTCACCATCGCA TAA TGAGTTGGCAAGAGGAGAC  GATGTCAGTATTTAA  47 37
SH05_RS16090 3244816 .. 3244840 -  -6.5   -5.0133   TATGCCTTGAAAAAA         GCCGAAG-GT GAAAAG ACACTTCGGC          ATTTATGTAAAATCA  84 54
SH05_RS16085 3243482 .. 3243496 -  -6.4  -4.09519   ATCAGTTAGAAATAA               CACCTG TTT CAGATG               ACAGTAAGCCTGAAA  68 179
SH05_RS16070 NONE
        emrB 3236041 .. 3236088 -  -7.1  -3.22884   TCAGTAAGTTACCAA CAGATGCACGGTTTCAGCGCAG AACAA CTGCG-TAATACCACTCATCTG GTGTGGGCGACGGGA  57 202
SH05_RS16050 3232187 .. 3232220 -  -7.4  -3.36289   CACCATTCCAATCAA     TCCCCTGCTG-CTTC AAGTA GATGTCTGCAGGGGA     CACCATCCTTGTGTT  64 126
SH05_RS22980 NONE
SH05_RS16005 NONE
SH05_RS16000 NONE
SH05_RS15995 NONE
SH05_RS15990 3226540 .. 3226554 -  -7.1  -2.86747   GATGCAGCAGAAGCA               CAGCG CCAGT CGCTG               ATTGATACTGCAATG  54 174
SH05_RS15950 3219843 .. 3219862 -  -7.9  -5.68489   GATAACAACAAAAAA            GGTGAGT TTTGCG ACTCACC             TTTTTTATTTGTTTC 100 41
SH05_RS15935 3216232 .. 3216258 - -20.2  -5.26907   GAAGAGAAAAGAAAA         CGCCCCTGCCAG CAA CTGACAGGGGCG         TACGTACCCGAGAGG 100 43
        fadI NONE
        fadJ 3212573 .. 3212596 -  -4.6  -2.90571   AATGGCGTAAGTATA          GTCAATATGC GTTT ACATTTTGAC           CAACACTCCGCCATT  50 70
SH05_RS15920 3211909 .. 3211941 - -14.4  -3.21099   CTGCCTGATGAGCAA      TTATGCCCAATGAA TCTAC CTCATTGGGCATAA      TTTGGAACTCATCAG 100 37
SH05_RS15915 3210678 .. 3210701 - -13.2  -3.42684   AAATCCATTTAAATA          CCCCATAGCA GTGT CGCTATGGGG           GTATGCCTTACAGGT 100 33
SH05_RS15910 NONE
SH05_RS15905 NONE
SH05_RS15900 NONE
SH05_RS15895 NONE
SH05_RS15890 NONE
SH05_RS15885 3204434 .. 3204445 -  -3.6  -3.45027   AGCCGTTATTAAATA                CCGA AGGT CCGG                 TGAAATATGTTCGCC  51 434
SH05_RS15875 NONE
SH05_RS15870 NONE
        mepA NONE
SH05_RS15860 NONE
SH05_RS15855 NONE
SH05_RS15850 3199471 .. 3199485 -  -7.1  -3.30124   GTGTAGGCCTGATAA               GACGC GATAA GCGTC               GCATCAGGCATGCTG  64 57
SH05_RS15840 3195914 .. 3195931 - -11.3  -4.64598   CAATGATGTGAAAAA             GGGAACC ATCA GGTTCCC              TTTTGCGTTAGTGCC 100 105
SH05_RS15835 3194111 .. 3194122 -  -4.4  -2.83522   AGCTGGTGACCAAAC                TTGC GGCG GCAA                 CGGGGGAACCCAGCA  46 471
SH05_RS15825 3192301 .. 3192328 -  -7.7  -4.04579   TCCAGAAATAGCAAA        GCTCCCTGCCA ATGTTA CAGCAGAGAGC         ATGAAGAAGAGATTA  74 38
SH05_RS15820 3191265 .. 3191282 -  -4.1  -2.62184   GCTGGTCGGACATTA             GTACAGA TACT CCTGCAC              CAGTTTCTCGGCGAT  45 5
        truA NONE
SH05_RS15810 3189684 .. 3189696 -  -3.3  -5.24531   ACTTTGGATAAAAAA                GTGGT CGA ACCGC                GGAGTTACTTTTTAT  75 37
SH05_RS15805 3188605 .. 3188627 -   -17  -4.46656   GTGAGAATAGCAAAA           GGGCAGAGCC AGT GGCCCTGCCC           TTATCAGTTATCAGG 100 36
SH05_RS15800 NONE
SH05_RS15795 3186492 .. 3186517 -  -9.8   -5.1356   GCGCATCAATAAAAA         TGGCGCTGAA AAAATA TTCAACGCCA          TCGACTTTTTATGCC 100 156
SH05_RS15790 3185900 .. 3185916 -  -2.9  -2.64243   CCACATCTCAGAGCA              CTTACGC TCT GGGCAAG              AAACTTGACGAGCTT  41 10
SH05_RS15785 3184316 .. 3184334 - -12.4  -2.53263   GGGAGTTGCAAGTCA             GGGTGCCA GAC CGGCACCC             TCAGCGAAGGCATCA  86 38
SH05_RS15780 3183656 .. 3183674 - -13.2  -4.07687   ATCGCGGTTGCAAAA             TTGCCCTG AAA CAGGGCAA             CAGCGGAGTTATGCG 100 34
SH05_RS15775 3182484 .. 3182494 -    -4   -4.3739   TATCGTGCCATAAAA                 TTGA CCA TCAA                 GGCAAAATATCCCGC  63 166
SH05_RS15770 NONE
SH05_RS15765 NONE
SH05_RS15760 NONE
SH05_RS15755 3179332 .. 3179355 - -12.4  -3.73042   TTCCCCATGAAAATA          CTCCGGCAGC GTTA GCCACCGGAG           AGGAAATTATTTCAG 100 32
SH05_RS15750 3177751 .. 3177791 -  -6.8  -3.93583   GAATTTACCCATAAA CTCTGCGCTC-GCTGGGAA GAAA TTGCCTGCCGGGCGCAAAG  TGACAAAACGCGAGT  68 509
SH05_RS15730 NONE
SH05_RS15725 3174871 .. 3174885 -  -3.5   -3.2115   TAAATTACGGATTAA               TCGCG ACCTG CGCAA               TGATACTTTGATCAT  48 0
SH05_RS15720 3174239 .. 3174252 -  -9.5  -3.17553   CTAAAAATGTTAAGA               GCCGC AATT GCGGC                TCTTTTTTCATTCTG  72 33
SH05_RS15700 3168795 .. 3168810 -  -3.3  -3.45707   TAAAGATTCAAAAAT              TTGTG CAAATT CACAA               CTCAGCGGGACAACG  49 42
SH05_RS15695 3168259 .. 3168277 -    -6  -5.76949   TACGGTGAAAAAAAA             GAAGGC TGAGTAT GCCTTC             TTTTATATGCGTAAT 100 51
SH05_RS15690 NONE
SH05_RS15685 3167028 .. 3167045 -  -9.8  -5.24129   TTCTGCCATAAAAAA             GCCCCG ACGAGA CGGGGC              TAAATCATGATCAGG 100 45
SH05_RS15680 3164783 .. 3164793 -  -3.2  -5.09225   AGGCTATTGAAAAAA                 TCGC TCA GCAA                 AAACTGGTCGATATG  77 378
SH05_RS15665 3161254 .. 3161283 -   -15  -5.86061   TTTTACTAAAAAAAA       GCCGCTGGGGTT TAAAAC ACCCCCAGCGGC        TCGTTTTTTACACTA 100 71
SH05_RS15660 NONE
SH05_RS15655 NONE
SH05_RS15650 NONE
SH05_RS15645 NONE
SH05_RS15640 NONE
SH05_RS15635 NONE
SH05_RS15630 NONE
SH05_RS15625 NONE
SH05_RS15620 NONE
SH05_RS15615 NONE
SH05_RS15610 3148691 .. 3148703 -  -5.5  -4.08216   TTATTCCTTGTAAAA                GTCCC GTC AGGAC                CGGATTTTCAACGAA  65 153
SH05_RS15605 NONE
SH05_RS15600 3145631 .. 3145649 - -11.7  -4.82901   TCTTTTTCAGAAAAA             CCGCCGA GCATG TCGGCGG             CTTTCTGACTTACAA 100 50
SH05_RS15585 3143208 .. 3143223 -  -4.7  -3.28001   CATTGTTAAATGCAA              TACCG TATATT CGGTA               TGTAACAGCGATATC  53 138
SH05_RS15570 3139567 .. 3139600 - -22.7  -3.35073   ATCATTGTTAATTAA     TTCGACCAGTCAGCA AATA TGCTGACTGGTCGAA      CATAGTTTGCTAAAC 100 46
SH05_RS15555 NONE
SH05_RS15550 3136304 .. 3136334 - -13.4  -2.85847   AAGCCTCACATTATA       CGGGGTACTACA AAAAAAA TGCAGTACCCCG       GTGTAGGGAGGTTTT  93 39
SH05_RS15545 NONE
SH05_RS15540 NONE
SH05_RS15535 NONE
SH05_RS15530 NONE
SH05_RS15525 NONE
SH05_RS15520 3129214 .. 3129228 -  -5.8  -3.23045   ATTTACAGATTAACA               GATAAA CTC TTTATC               AACGGCAATGGAATG  55 71
SH05_RS15515 3128728 .. 3128742 -  -2.1  -3.88985   AAAACGCTTCATAAA               CTTGC GCTAA GCAAA               GCCTATGCCTTGCTC  54 181
SH05_RS15475 3120612 .. 3120633 - -13.1  -2.93073   CTTCTGTAACAATGA           TGACAGCCA TTAC TGGCTGTCA            GATTGAAAATTTAGT  95 36
SH05_RS15465 3119329 .. 3119351 - -11.2  -3.38832   TAGTAAGAAACTGAA           TGGCGCGACA GAA TGCCGCGCCG           GAAGGGATCAGAAAC  81 33
SH05_RS15460 3118038 .. 3118054 -  -7.9  -3.72576   TGCCGGTGCAGTAAA              CCGGCAC AGA GTGGCGG              AATCAGACAGATAAG  70 28
SH05_RS15455 NONE
SH05_RS15450 3115798 .. 3115831 -  -8.1  -3.21772   AAGCTCCTTAGAATA     TGTGGGCGTTACCGT TGTC ACAGCAACGCCCGGA      GTGATTAGTGGCTGT  63 30
SH05_RS15445 NONE
SH05_RS15440 3113633 .. 3113665 -  -7.7  -3.43553   ATAACCACTAATTAA      CACAGGCCCACAG CCGATCC CCATGGGCCTTTG      ATATCAATAACTACC  68 29
        glpT NONE
        glpQ 3105528 .. 3105553 - -15.5  -2.86743   AAATTTGATATGAGA         CAGGATGGCGC ATGA ACGCCATCCTG          CAGTAACATTACTCT 100 34
SH05_RS15395 3104346 .. 3104371 -  -7.6  -3.53811   TTCAGCCGGGGGAAA         TTTTGCCCTG TTGTTG CCGGGCAAAA          GGCGATATTGAAATC  68 103
SH05_RS15370 3096001 .. 3096012 -  -7.2  -3.30124   CCGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCAACCGT  64 57
SH05_RS15360 3092347 .. 3092368 -  -8.7  -4.55023   CCTAATACGACAAAA           GCCCAGACT TTGC AGCCTGGAC            TTTTCAATTCAAACA  93 77
SH05_RS15355 NONE
SH05_RS15350 3089928 .. 3089950 -  -6.3  -2.53894   ATCAGCATTAGCAAG          CCCTGTTCCC ACAA GAG-ACAGGG           ACAAGCACGCTGCTA  53 38
SH05_RS15345 NONE
SH05_RS15340 NONE
SH05_RS15335 NONE
SH05_RS15330 3082921 .. 3082965 - -13.2   -3.3482   GAACGGTTGAATTAA TCAATAAAAACACCCGATAGC GAAA GTTATCGGGTGTTTTC-TTGA ACATCGACGGCGAAG 100 54
SH05_RS15295 3072591 .. 3072643 - -12.7  -2.59298   TAGGCCAGATAAGAC GCGTCAGCGTCGCATCTGGCATT TGCACTG AATGCCGGATGCGGCGTAAACGC CTTATCCGTCCTACG  88 36
SH05_RS15280 NONE
SH05_RS15275 3068642 .. 3068653 -    -3    -3.965   GGTTAAAATCAATAA                CTTA TTCT TAAG                 TATTTGACAGCACTG  56 7
SH05_RS15270 3067238 .. 3067251 -  -9.5  -5.43514   AAAACAATGAAAAAA               GGGCC CGCA GGCCC                TTTGTTCGATATCAA 100 47
SH05_RS15265 3066054 .. 3066067 -  -2.3  -2.70932   CTCCCTGGTTAAGGA               TAGCC TTTA GGCTG                CCCGGTCACCATCAC  40 64
SH05_RS15260 NONE
SH05_RS15255 NONE
SH05_RS15250 3062558 .. 3062588 -    -9  -2.79183   GGGATTTTTAGCATA       TTGACCTGACGG CAGCAGT CCGCCAGGTCAG       CGTCGTAATATTATG  67 36
SH05_RS15245 3060697 .. 3060729 - -26.5  -2.82516   CGTCTTATCAGCATA      CGCCACATCCGGCAT ACC ATGCCGGATGTGGCG      TATCATTACAACGCA 100 31
SH05_RS15230 NONE
SH05_RS15225 NONE
SH05_RS15220 NONE
        napG NONE
        napH NONE
        napB NONE
SH05_RS15200 3053276 .. 3053286 -    -4  -3.09193   AGCATACCCACGCAA                 TAAC CCT GTTA                 AAAACCTGGCTCGAC  49 23
SH05_RS15195 NONE
SH05_RS15190 3051986 .. 3052012 -  -3.1  -2.59883   AAAATCAGTAATCCA        GCGTTATTGAAT GCTG ATTCG-TAACGC         TGCCGCCGTCGCAAA  42 2
SH05_RS15185 NONE
SH05_RS15180 NONE
SH05_RS15175 NONE
SH05_RS15170 NONE
SH05_RS15165 3048032 .. 3048044 -  -3.3  -5.07486   CACGCCCAATAAAAA                CCTCA TTG TGCGG                CCTCCTTACTGTATT  71 15
SH05_RS15160 3046778 .. 3046804 -    -8  -5.18726   GGGGCACAATAAAAA         TAGCCCGATG GATTTAT CATCGGGCTG         AGATTTATGACAAAC  95 206
SH05_RS15150 3045833 .. 3045846 -  -2.4  -2.73701   TCCTATGAAATTAAT               TGCT GTTAAA AGCA                TTGGGTACAGAAAAT  41 17
SH05_RS15145 3044645 .. 3044656 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH05_RS15140 3041932 .. 3041948 -    -8   -5.4756   AATCCCAAGAAAAAA              CCAACC CTTAC GGTTGG              TTTTTTTATATCTGC 100 94
SH05_RS15120 3038451 .. 3038466 - -11.8  -5.06103   ATAAGTTGTAAAAAA              CCCCGC TCCG GCGGGG               TTTTTTGTATCTGCA 100 126
SH05_RS15105 NONE
SH05_RS15100 3034164 .. 3034181 -  -7.7  -4.26202   ACATGCATCAACAAA             GGAAGCC TTTT AGCTTCC              TCGTTGTGCAATAGA  79 41
SH05_RS15095 3033181 .. 3033201 -    -6  -3.37487   TTAGATCCTGAAACA            CGCCACCG TTATC CGGCGGAG            TTCTCTGGTGGTCAG  56 344
SH05_RS15040 3020287 .. 3020308 -  -2.9  -2.71712   CGCCGGGCTGGAAAT           CCCGACGAT GTTG ATTGCCGGA            TATTTCGCCAAACGT  41 385
SH05_RS15030 NONE
        fruK NONE
SH05_RS15020 3015304 .. 3015336 - -14.3  -3.72576   TTTGCGCTCATCAAA      TGTTACAGGACAGGA AAT TTCTGCCCTGTAACA      CACCTTTTATTACGC 100 35
SH05_RS15015 NONE
SH05_RS15010 3012989 .. 3013006 - -10.5  -3.54424   CTTCATGCCGGTAAA             CCCGGCG TCAG CGCCAGG              TTTTGGTATGCTTGA  80 75
SH05_RS15005 3011218 .. 3011240 -  -4.1  -3.57808   GTTAATCGATAAAGA          CCATGAACCG CGTG CGGTGCA-GG           CTATTGAAGAGTGTT  53 497
        rihB 3009825 .. 3009860 - -11.8  -3.96148   TCTGCCCATCAGAAA    TAGCCAGGCCTGCATC TTGC GATACCGGCCCGGCTT     GTTATCAACACTTAA 100 37
SH05_RS14990 3008419 .. 3008460 -    -8  -3.63569   CCAATGGTGTAACAA TGT-TGCCGGATGCGACGC TTAAC GCGTCTTATCCGGCCTACA AATCAGGCAATTTCA  70 87
SH05_RS14970 NONE
SH05_RS14965 3002649 .. 3002668 - -13.6  -4.75776   AATGGAATTGAAAAA            GCCCTCTC GGTT GAGAGGGC             TTAGCAAGGAAGGGA 100 47
SH05_RS14960 3000376 .. 3000398 -  -3.3  -3.76952   TTTACTGAAGTGAAA          GTCCGCCCGG TTCG CCGGGCAT-C           TTCTCATCAGAAGCG  53 32
        folE NONE
SH05_RS14940 NONE
SH05_RS14930 2996154 .. 2996165 -  -4.4  -4.08767   GTTACCTCGGCAAAA                GTGA TTAT TCAC                 TGTTACATACGGGTT  61 115
SH05_RS14925 2994946 .. 2994968 - -14.9  -3.88232   TTGGCCATACAATAA           GGGCGCAGT AATAG ACTGCGCCC           AATCAGTCTTATTTC 100 34
SH05_RS14920 2993253 .. 2993266 -  -2.3  -3.05384   TTGCCCGGCATCCAA               CGCCA TTCA TGGCC                ATATCAATGATTTTC  42 158
SH05_RS14915 2992634 .. 2992659 -  -6.1  -3.39772   TTAAAGGTGCAAAGA         CGCAAGACGCA GAAT TTCGTTTTGCG          TTGTTGTTTTTGTAT  59 111
        mglC 2991360 .. 2991393 -  -8.9  -3.10533   TTGTAAAACCAGAGA     CGCATCCGGCA TTTGGTTCCTGT CGCCGGATGCG      GCTTGAACGCCTTAT  69 225
SH05_RS14870 2984021 .. 2984060 -   -20  -2.71364   TCACTGGCGCAAGGA  GCGCGCAGGGGGCGGC CAATCGCC GCCGCCCCCTGCACCC   CCGGGCTCTGGCGAA 100 253
SH05_RS14860 NONE
SH05_RS14855 2981211 .. 2981225 -  -5.6  -5.06816   ACGCGGGAAGAAAAA               GCCGGA TCA TCAGGC               GTAAAACCATTGCCC  82 159
SH05_RS14845 2979847 .. 2979880 - -14.7  -2.84527   GAATCGTGAGGAAAT     GCTGCATTGCTGACA TTTA CGCCAGCAATGCAAC      GTCAAAGAACTTTCT 100 39
        pbpG 2978754 .. 2978782 -  -7.6  -4.74801   GAAGTGGAGTAAAAA       TTACGGATGGCAGA GTA TC-GCCATCCG-AA       TTCACTTAATCGTTC  91 31
SH05_RS14830 2974512 .. 2974530 - -12.4  -3.86015   TATCCGGCCTACAAA             GGGCGCAA ACG TCGCGCCC             TTACTAAAGCATTAC 100 37
SH05_RS14825 NONE
SH05_RS14820 NONE
SH05_RS14815 NONE
SH05_RS14810 2970397 .. 2970412 -  -3.2  -3.27923   GCCCAACAGCAGCAA              CTCACC AGTT GGCAAG               AACAAGGCCATGATA  47 208
SH05_RS14795 NONE
SH05_RS14790 2967076 .. 2967086 -  -3.2  -4.68593   TTGATGAGGCAAAAA                 GCCA TTT TAGC                 AGTCTTTTACAGGCC  65 32
SH05_RS14785 2966168 .. 2966194 -    -8  -4.29073   GAAGAATCGAAGAAA         TTCAGCGCCAAT CTG AACGGCACTGAA         ATTGCCATTACCTAT  76 407
SH05_RS14730 2947847 .. 2947879 -  -9.9  -3.80855   TGCGGCAAAAACTAA      TACACCGCATCAATG TAA CATCTCTGCGGTGTA      TGAAGAATAACCAGA  84 55
SH05_RS14725 2947303 .. 2947332 - -16.7   -5.5353   GATATCAATAAAAAA       GCCGAAATCATTT ATAT AAATGATTTCGGC        TTTCTAAATGCAATT 100 58
SH05_RS14715 2946473 .. 2946493 - -13.3  -4.54727   CCTCTTAAATTAAAA            GGCCGCCAT GGG ATAGCGGCC            ATGTTTATTACCTGG 100 62
SH05_RS14710 2945762 .. 2945774 -  -3.3  -3.07895   GTCATTCTCAACATA                GGCAG CTC CTGCA                ATTAAATTTTGTCAC  46 27
SH05_RS14705 NONE
SH05_RS14700 2942154 .. 2942174 - -11.1  -5.42259   TCATCGCTAAAAAAA            GCCCCCTCA TCA TGAGGGGGA            AATGCAGACACCTTG 100 81
SH05_RS14685 2940184 .. 2940195 -  -5.8  -2.72013   ACGTGAAGAAGCAAT                GACC TGGT GGTC                 CGTGACTTCCCTACG  52 204
SH05_RS14680 NONE
SH05_RS14675 2938560 .. 2938574 -  -3.5  -2.66008   AAAGCAGCTATAGTA               CGGTG CTCAC CACCA               GGCGTGGAAGTGGTG  44 17
SH05_RS14670 NONE
SH05_RS14665 NONE
SH05_RS14645 2932178 .. 2932199 - -13.7  -5.58209   TGAAAGGCAAAAAAA           CGGCCTCCC GATA GGGAAGCCG            TAGCAAAGTGCGCGT 100 188
        gatY 2931190 .. 2931211 -    -8  -2.71712   TTTTCCTTGTTAAAT           GGCAGGTGC GTTAT GC-CCTGCC           CTCGCAGCCACAATC  60 14
SH05_RS14635 NONE
SH05_RS14630 NONE
SH05_RS14625 NONE
SH05_RS14620 2927776 .. 2927786 -    -4  -3.26405   CTCAGGTAAAAATTA                 TTCT GCG AGAA                 CGACTTTCTCTTGTT  51 12
SH05_RS14615 2926656 .. 2926680 - -13.5  -3.21276   CTGTTTTGCACAATA          CCGGGCCAGCA TCA CGCTGGCCCGC          GGTTTCAGGGAATGA 100 30
SH05_RS14610 2926235 .. 2926245 -  -3.2  -4.24123   GGAACAATTTGAAAA                 CAAG AAC CTCG                 CTTAGGCCTGTGTCC  58 60
SH05_RS14595 2924494 .. 2924538 -   -13  -3.39595   TTGAACCAGGGAGAA TCCGTAATGCCGGATGCGGTG TAAA CACCTTATCCGGCA-TACAGA ACAATACTACACCGT 100 32
SH05_RS14585 NONE
SH05_RS14580 2922123 .. 2922140 - -12.7  -5.29782   CACATCGACAAAAAA             GCCCCTC GACT GAGGGGC              TTCCTGTTTCTAATT 100 472
SH05_RS14530 2907312 .. 2907333 -  -8.7   -2.7035   TTGATGCATAGACCA           GACGCCAGC TCAC ACTGACGTC            CAGCCTTTTGGCGCT  66 13
SH05_RS14525 2906525 .. 2906554 - -12.3  -2.73243   ATTTATTGTTTAAAC       TGGCGGTTGAA TTGTTGTC TTCAACCGCCA        TGAGAAACTCACTCT  88 34
SH05_RS14515 2903458 .. 2903484 -  -8.6  -2.70932   TCGTCTGCTTAACGA         TCTGGTACGCGA TGC CCGCGAACCGGA         AAAAGTGGCCCTGTT  60 432
SH05_RS14505 NONE
SH05_RS14500 2901515 .. 2901526 -  -3.6  -3.30124   CCCCAGGCCGGATAA                GGCG CTCG CACC                 GCATCCGGCGACCAA  49 43
SH05_RS14490 NONE
SH05_RS14485 NONE
SH05_RS14480 2894158 .. 2894170 -  -4.1  -4.72272   CCGCTGGATGAAAAA                CGTGA ATA TCACA                CCATTGCCGGGCTGT  70 466
SH05_RS14470 NONE
SH05_RS14465 NONE
SH05_RS14460 NONE
SH05_RS14455 NONE
SH05_RS14450 NONE
SH05_RS14445 NONE
        wcaD NONE
SH05_RS14435 NONE
SH05_RS14430 NONE
SH05_RS14425 NONE
SH05_RS14420 NONE
SH05_RS14415 2880602 .. 2880614 -  -6.2  -2.58861   CAGTATTTTCATAAT                CCGG GTACT CCGG                TACGCTTCTCAGCGA  54 6
SH05_RS14410 NONE
        cpsB NONE
SH05_RS14400 2876454 .. 2876482 -  -2.4  -3.14878   TGGGGTAAGGGAAGA        TCCGACATTACT CGTTC AGCAACGTCAGC        AGAGTTCGCGTTCGC  43 4
SH05_RS14395 NONE
SH05_RS14390 2873387 .. 2873433 - -15.1  -2.62463   CGTAGGACGGATAAG GCGTTCACGCCGCATCCGGCA TTCAG TGCCTGATGCGACGCTGACGC GTCTTATCAGGCCTA 100 124
SH05_RS14385 NONE
SH05_RS14380 2870766 .. 2870778 -  -5.5  -3.85698   GTTCTCCTCTATAAA                GCCTG CAG CAAGC                TGGCGAGTTCTCGAT  61 6
        wcaM NONE
SH05_RS14370 2868191 .. 2868246 - -18.7  -4.52857   ATGGTTTATATAAAA CAACGGCAG-GAAGATTCGCAACAAA TTACT TTTGCTGCGAATTTTCACTGCCGTTA TAATTTTCTTATCAA 100 65
SH05_RS14365 NONE
SH05_RS14360 2865894 .. 2865918 -  -2.2  -2.52543   ATTCCTTTTAATTCA          TCTTGCTC CACCATCAC GAACAAGA          TGCAAAAACTATTAA  39 37
SH05_RS14355 NONE
SH05_RS14350 NONE
SH05_RS14345 NONE
SH05_RS14340 NONE
SH05_RS14335 NONE
SH05_RS14330 NONE
SH05_RS14325 NONE
SH05_RS14320 NONE
SH05_RS14315 NONE
SH05_RS14310 2856325 .. 2856339 -  -2.8    -4.323   GCTAAATATCTAAAA               GTACTT TTT AAGTGC               CATCTGAAGGCTTTT  59 434
SH05_RS14305 2854665 .. 2854687 - -11.2  -5.75945   ATTTGGCAAAAAAAA           GCCCGGTGCA ATA TACGCCGGGC           CTCAATTTTATTGTT 100 53
SH05_RS14300 2853269 .. 2853289 -  -8.3  -4.09554   AGTAACAAAAGACAA            TCAGGGC GTAAATA GCCCTGA            TAACAAGATGTTAGT  79 36
SH05_RS14295 2852127 .. 2852152 - -11.1  -5.41143   CATCCGGCAAAAAAA         CGGGCAAGGTG TCAC CACCCTGCCCT          TTTTCTTTAAAACCG 100 47
SH05_RS14250 NONE
SH05_RS14245 2844078 .. 2844094 -  -8.1  -3.53184   TATCAAAACTGACAA              TTCATTC TAT GAATGAA              TCTGTTCAATAATGA  68 31
SH05_RS14240 2843151 .. 2843174 -    -3  -2.87344   CAGTGGTTTCATACA          CGCCCCCTTGC AGT GCATGCGG-CG          TCCTGCTGGCGTGAT  43 44
SH05_RS14235 2842109 .. 2842129 -    -9  -4.72473   TGAAGCAAAAAATAA            CCGACGCT GATGA AACGTCGG            TTTTTAGTCATTTTT 100 114
SH05_RS14230 2840545 .. 2840572 - -12.8  -6.04419   AAAAGAATAAAAAAA        CCGGAGCCAAAT GTTC ATTCGACTCCGG         TTTATTATTAGAAAA 100 46
SH05_RS14225 NONE
SH05_RS14220 2838664 .. 2838679 -  -3.2  -4.08064   AATTCTGCGTGAAAA              TCCGCA AGTG CGCGAA               AAAGTGGTGGCGATA  58 461
SH05_RS14210 2836236 .. 2836251 -  -3.2  -2.80113   GATTATGCGAGCAGA              CTCGCA CTCC TGCCAG               TCTGCTGCAAAAGAA  43 44
SH05_RS14205 2835565 .. 2835587 -  -6.3  -3.92373   TATCCGACGGACAAA           CCGGGAA CAGTGTAAT TTCCCGG           CAGGAGCGAAAAAAT  67 116
SH05_RS14200 2834406 .. 2834420 -  -2.8  -2.78495   GCAGCAGCAAGATGA               TTCTGA AGT TCAGGA               ATTATTTGCGCAAGG  42 27
SH05_RS14195 2833878 .. 2833908 -   -17  -2.91042   GATAAGAATCAATGA       GCAATGAGGGTTGC CGG GCAACCCTCATTGA       ATAAAACGGGAATTA 100 38
SH05_RS14135 NONE
SH05_RS14130 2823634 .. 2823650 -  -6.5   -3.4409   AACAAAAATCAGCAA              CGAAGAG ACG CTCGTCG              TGACCACGAATCGTT  61 216
SH05_RS14125 2822181 .. 2822193 -  -3.3  -3.22476   ATGACTCATGATGAA                CCCTG TTC CATGG                CTCCAGATGACAAAC  46 149
SH05_RS14120 2820701 .. 2820711 -  -3.2  -3.97511   CATTGAACAGAACAA                 TGGA TCC CCCA                 CCGTTGCTGACCGCA  56 508
        cobU NONE
        cobS NONE
        cobT 2818238 .. 2818256 -  -3.1  -3.54424   TCCTATGTCGCGAAA             GCTATCC GTTAA GTATAGC             TTTTATCAGACTTTT  49 46
SH05_RS14095 2817236 .. 2817253 - -11.3  -5.22039   GCCAAATTCAAAAAA             GCCTGCT TTCT AGCAGGC              TTTTTGCTTTCTAAT 100 52
SH05_RS14085 NONE
         cbl 2814829 .. 2814845 -  -9.4  -3.07283   CAAATTCCTGAAAAG              CCCGCT TTTAT AGCGGG              ATTTTTGCTATATCT  72 33
SH05_RS14070 2812993 .. 2813004 -  -4.4  -3.35278   TGAACTACAGAGGAA                TCGT GAGA ACGA                 GGCGAATATTAGCGA  51 113
SH05_RS14065 2812825 .. 2812853 -  -9.6   -5.4387   ACAGAAATCAAAAAA        CCCGGTCACTTT TTTAC AAGGTAACCGGG        TAAAAATAATTTTTA 100 88
SH05_RS14045 2806926 .. 2806947 -  -4.3  -3.58533   TTATAATTTCTTAAA           GAGTGTTCC ATTC GGGGCACTC            TTTTTTACATTCCCT  54 243
SH05_RS14025 2797850 .. 2797862 -  -7.7  -3.07307   TAAATGTTTACGCAA                GTGCA CAA TGCAC                CCTTTCCACTATCAA  59 520
SH05_RS13990 NONE
SH05_RS13985 2791214 .. 2791226 -  -4.8  -3.59979   TTGGTTTACCTGAAA                GCCA GGACG TGGC                TGCCGCTTTACAGTG  55 482
SH05_RS13975 2790017 .. 2790055 -  -6.9  -4.16909   ACTTCAACAAAAACA  TGTCCACCTATGTTGATT ACAA AATCAACCT-GCTGGACA   ACGACGATGACTTCT  72 103
SH05_RS13960 NONE
SH05_RS13955 NONE
SH05_RS13950 NONE
SH05_RS13945 NONE
SH05_RS13935 NONE
SH05_RS13930 2783036 .. 2783060 - -16.5  -2.83164   GCAGGCATTAGCACA          CCAGGCCGGAT GTG ATCCGGCCTGA          TGTTAATGATACCCT 100 42
SH05_RS13925 2781015 .. 2781039 -  -8.6  -3.65827   CAATTGTCAGGCAAA         CGCCCA-ACCA CACT TGGCCTGGGCG          ATGGGCCAAACGATG  69 198
SH05_RS13910 2779483 .. 2779516 - -13.9  -3.04248   CAACATGCGCTAACA     CATTCTGACTGGTGG TTTC CCACCAGTCAGGCTG      AATAAGATTACTCTG 100 33
        fliE 2767576 .. 2767591 -    -4  -3.82604   GGATGTAATTAACAA              CAGGTT ACAA AACCTA               CACCTGCATGCTCAT  57 23
SH05_RS13825 NONE
SH05_RS13820 2766126 .. 2766136 -  -5.4   -2.7898   TTTAATATTTAATTA                 TGAG TTC CTCA                 CCATCTATTACATAC  50 1
SH05_RS13795 2762538 .. 2762558 -   -14  -2.66272   GGTGATTTAAATTCA            TCCCCGGC GGCAA GCCGGGGA            GATTTCATTACGGCA  95 33
SH05_RS13770 2756808 .. 2756824 - -15.1  -5.64274   CCAGGCAGAAAAAAA              CCCCGCC GGT GGCGGGG              AAGCACGTTGCTGAC 100 200
        fliA NONE
SH05_RS13760 NONE
SH05_RS13755 2754436 .. 2754453 -  -8.4  -5.63517   CGCGTAAATAAAAAA             GGCGCT AGTGAA AGCGCC              CTTTTTTGTCATTAT 100 46
SH05_RS13750 NONE
SH05_RS13745 NONE
SH05_RS13740 2751762 .. 2751779 -  -3.5  -3.38272   GAGTATCATTTATAA             TGATAAT TCAA ACTATCA              CATAAATAAGATTTA  49 197
SH05_RS13735 2750939 .. 2750965 - -12.3  -4.70583   GTCAGTAATATAAAA         CCGGCTGATAG CGTGC CTTTCAGCCGG         TTTTTGCATCTGGCA 100 59
        sirA NONE
        uvrC NONE
SH05_RS13710 2747155 .. 2747167 -  -4.1  -3.60431   AAAATTACGCCGAAA                CGATC ACT GATCA                AGCAAATCTGCACGC  54 16
SH05_RS13705 NONE
SH05_RS13700 NONE
SH05_RS13695 2746644 .. 2746657 -  -8.1  -5.64274   GCAGGCACAAAAAAA               CCACC CGAA GGTGG                TTTCACGACACTGCT 100 72
SH05_RS13690 2745798 .. 2745839 -  -5.1  -2.75819   CAGATAGCCTCAAAT TCCTTATTGGGTGCCAG AATTAACG CTGACACCCAATTTGGC  CTCTTAATGCAGGCA  50 29
SH05_RS13680 2744029 .. 2744039 -  -6.8  -3.61988   TTATTGATAAATTAA                 GCCT GGC AGGC                 AAAAGCGGCGAAGGT  63 126
SH05_RS13660 2742363 .. 2742390 - -13.5  -3.86822   GAAGGTTTTGAGAAA        CCGCTGCCTCA TCTGTT TGAAGCAGCGG         TTTTTTTAATGGGAT 100 31
SH05_RS13650 NONE
        araG 2738452 .. 2738462 -  -6.8  -3.07816   TCCTTACTCAGGCAA                 CAGC CTG GCTG                 ACTTTAGGCATCGCA  59 7
        araH 2737381 .. 2737402 - -11.6  -3.49048   TTGCAACGAAGAACA           GCCAACCG TTATGG CGGTTGGC            TATGGTGGGAAAAAA  89 66
SH05_RS13635 NONE
SH05_RS13630 2734708 .. 2734721 -  -2.3  -4.08692   CAACTGCTGGCAAAA               GCGGT ATCT ATCGC                CAGGCCAGTAAAGGG  56 381
SH05_RS13620 NONE
SH05_RS13615 2732881 .. 2732904 - -12.5  -5.75342   TTGGGGCAAAAAAAA          GCAGCGGTA CGTCGT TACCGCTGC           TGGAATGTTGCGCCT 100 52
SH05_RS13610 NONE
        motB NONE
SH05_RS13600 NONE
SH05_RS13595 2728452 .. 2728472 -  -8.3  -5.67283   AATTGAAATAAAAAA            CCCGATG CGCAGAT CATCGGG            TTCATTTCAATTGAG 100 54
SH05_RS13590 NONE
SH05_RS13585 2725021 .. 2725050 -  -2.1  -2.90763   CCCACAGGGCAGAGA       TGAAGTCATAGCG CCTT CTCAATCACTTCA        GGATACCACTGGCGC  42 23
SH05_RS13580 NONE
SH05_RS13575 NONE
SH05_RS13570 NONE
SH05_RS13565 2722016 .. 2722051 - -13.4  -2.78596   CATCGCCTTATCAGA    CCGCCTGATATGACGT GGTC ACGCCACATCAGGCAA     TACAAATCAAAATCC  93 32
        flhB NONE
SH05_RS13555 NONE
SH05_RS13550 2717868 .. 2717878 -  -6.8  -3.92996   CGTTATATAGAACAA                 GTGC CAC GCAC                 AGGTGTAAAAAAACC  68 392
SH05_RS13535 NONE
SH05_RS13530 2714113 .. 2714137 -   -10  -5.64274   TCAGGGATAAAAAAA          GGCCCCTG TTGAAATTG CAGGGGCC          TGGTACGAGCAAGCA 100 73
SH05_RS13525 2712691 .. 2712709 -    -3  -3.14132   TTCCTCCCTGATCAA             CGAGGATC ACT GTTTCTCG             GTAATATCTTTGGCG  46 13
SH05_RS13520 2709915 .. 2709927 -  -9.1  -2.87132   GTGGTTTTGTAGATA                TCCGC ATT GCGGA                TGTGAGCGTTACCAC  65 341
SH05_RS13490 2704386 .. 2704401 -  -3.2  -3.05384   GCCGCCTCGATGCAA              CGCGAA TGAT TTCGTG               TATTTGAGTCATATC  44 39
        nudB 2703822 .. 2703833 -    -3  -4.83615   GACCTGCCATAAAAA                TATC TCCA GATA                 GCCCTGCCTGTTCAG  68 37
SH05_RS13480 2703083 .. 2703093 -  -6.8  -2.94218   AGGCCTCATCAGAGA                 GTCG CTG CGAC                 CTCATCAGAGATTTC  58 8
        ruvC 2702487 .. 2702512 - -10.4  -3.61178   CGGAGGGAGTGGAAA         CGCCTCAGCC GGAACT GACCGAGGCG          GTATAACTTAACGCA  82 33
        ruvA NONE
SH05_RS13460 2699956 .. 2699994 - -11.7   -3.0976   GGTAAGACGCGAACA   GCGTCGCATCAGGCA TATTGCCAG TGCCGGATGCGGCGC   GAGCGACCAATCCGA  84 42
        znuA NONE
SH05_RS13440 2695939 .. 2695961 - -10.6  -5.99154   CACCAAATAAAAAAA           GCCGGTAC TGACTGC GTACCGGC           TGCGAATGGATGTTA 100 42
SH05_RS13435 2694760 .. 2694798 - -13.9  -2.81725   ACGGTAGAGTAAGTA  CGTTG-CCGGATGCGGCG AAAA CGCCACATCCGGCCTACA   GTTCAATGATAGTTC  95 114
SH05_RS13420 2692113 .. 2692128 -  -5.4  -4.15565   GCGATTACGGGAAAA              GCGCGCA AAG TGCG-GC              AAAACTGATAAAAAA  65 42
SH05_RS13415 2690399 .. 2690424 - -11.2  -5.80364   AGTGTAATAAAAAAA         GCCTCGTG-GG TGAAT CCGCACGAGGC         CTGAAAGTGTAAAAA 100 105
SH05_RS13410 NONE
SH05_RS13405 2687750 .. 2687770 - -15.5  -4.90296   AAAACGCTACAAAAA            TGCCCGATC CTC GATCGGGCA            TTTTGACTTTTACAG 100 35
SH05_RS13395 NONE
SH05_RS13390 2685651 .. 2685662 -  -3.6  -3.28712   TTCTGGGGCGGACAA                GGCA CTCG CGCC                 GCATCCGCCAACAGT  49 62
SH05_RS13380 2684707 .. 2684721 -   -10  -2.91582   CAGGCTATCCAGAGA               GCGGAA TTA TTCCGC               CAAAGTGCGTTTTTG  73 17
SH05_RS13375 2682262 .. 2682288 -    -5  -3.32844   GGCTGGACGGCAGAA         CAGATGGCCGAT ATC ACCGGACGTCCG         TCGTTGATGACGACC  51 181
SH05_RS13355 NONE
SH05_RS13350 NONE
SH05_RS13345 2678964 .. 2678993 -  -5.1  -4.70879   CTGAAATGTTAAAAA      CCGCC-C-GTTCT GGTGAA AGAACTGAGGCGG       TTTTTTTATTGGAAA  73 62
SH05_RS13340 2678776 .. 2678802 -  -8.8  -4.16832   TAACAGATAAAAAGA         GACCGAACAC GATTCCT GTATTCGGTC         CAGGGAAATGGCTCT  83 82
SH05_RS13335 2677693 .. 2677709 -    -5  -4.44608   CTGATCCAAAAAGAA              CCCGTC GGCAT GGCGGG              TTATTTGTCCTGGTT  68 294
SH05_RS13305 2671249 .. 2671268 -  -6.4   -3.1552   GCGCAGGCATGAACA            GGCGTCAT TATA ATGACGCT             ATCAGTAAATGCTAC  57 53
SH05_RS13300 NONE
SH05_RS13295 2668403 .. 2668426 -   -14  -5.00616   GTCGCTGTTAAAAAA          TCAGGCACAA TTTC TTGTGCCTGA           TTGATATTACTTGAC 100 32
SH05_RS13290 2667320 .. 2667339 - -10.7    -5.626   CAGGGCATAAAAAAA            GCGCGTC GATCAG GACGCGC             TTTTTAGTATTTACT 100 46
SH05_RS13280 2664933 .. 2664963 -  -6.9  -4.44046   CTCATGCTAAATAAA       GAACCTGTCTG TTTGATATT CCGACAGGTTC       TTACTCTCATCAGAA  76 35
SH05_RS13270 2664286 .. 2664300 -  -2.8  -3.37655   GTGCTGAAAAAATGA               TATCAC CAC GGGATA               AACTGGTTAATGGCA  46 13
SH05_RS13265 2663881 .. 2663912 -  -9.6  -3.25729   TATAATCAGGATGAA      TTGAGTAAC-CCTTC AAC GACGGGGTTACTCAA      GATTGAGGAAGGATT  74 39
SH05_RS13255 NONE
SH05_RS13250 2662824 .. 2662842 -  -8.1  -4.85177   AAAGCATAGTAAAAA             GCCTCGC ATTCG ACGAGGC             TTTATAGCGAGATTG  91 74
        rrmA 2661647 .. 2661663 -  -7.9  -2.55437   GATGAAGATGAAGAG              CCGCGCC GTC GACACGG              TTTCTGGCTACTGGT  56 278
SH05_RS13210 NONE
SH05_RS13205 2655619 .. 2655653 - -14.9  -3.54424   CGTGATTTTCCCAAA     TGGCTGGCGGGCAGC CAACC GCCGCCCGCCCGGCA     TAATGGACATATCAC 100 66
SH05_RS13180 2649895 .. 2649913 -  -3.2  -3.17723   GCACGGCGAAGGGAA             TCTTTAAA TAT TTAAAAGA             ACTGGGAGTACCCGC  45 329
SH05_RS13165 NONE
SH05_RS13160 NONE
SH05_RS13155 2645570 .. 2645594 - -14.4  -2.66106   TACCGTAAGAATGCA          GAAACAGCGG ACCAG CCGCTGTTTC          TTTTTCTTTAAAAAC 100 47
SH05_RS13150 2643689 .. 2643705 - -10.8  -5.75342   GGGCGTCAAAAAAAA              CGCCGG ATTAA CCGGCG              TCTGACGACTGACTT 100 46
SH05_RS13145 2642348 .. 2642358 -  -3.2  -3.57561   GCGGAACCTGCGAAA                 CAGC AAT ACTG                 GAAGGTGAAGCTGAC  51 196
SH05_RS13120 2636509 .. 2636524 -  -7.6  -4.64846   TTAGAAAGGAGAAAA              TCAGGT TTTA ACCTGA               TATCAACCCGATAAT  86 52
SH05_RS13115 2635754 .. 2635764 -  -2.4  -2.96395   AGGGAGGATTATAGA                 TGGG AAG CCCG                 CGACAACGCGGGCTG  42 47
SH05_RS13110 NONE
SH05_RS13105 2635078 .. 2635092 -    -5  -2.82529   GATAATTACCAACCA               CAAACA TCA TGTTCG               TTTTCCGTGTCATAA  49 1
SH05_RS13100 2634632 .. 2634657 - -13.4  -3.08056   ACCTCTAAAAAATAG         CAAAGGCTGC CTGTGT GCAGCCTTTG          TGCAATTTAAGCGTT 100 39
SH05_RS13085 2632869 .. 2632893 -  -6.5   -5.1675   CTACTCAGCAAAAAA         CACCA-CGCA GAACCA TGCGCTGGTG          CTGGCCGACTGGCTA  86 74
SH05_RS13070 2629980 .. 2629991 -    -3  -2.80464   GCAGCAAGCGTAAAG                TAAG CAGG CTTA                 TTATTTTTTGGCAAG  43 453
SH05_RS13060 2629256 .. 2629272 -  -2.1  -3.64236   ACTGAAATGGCTAAA              GGAAGCG TGA CGCATCA              GCGGTTAATCGCTTT  49 495
SH05_RS13030 2621338 .. 2621354 - -13.7   -4.2803   CACCGTAATGCAAAA              CAGGGCG TGA CGCCCTG              TTTTTATGCACAAAA 100 61
SH05_RS13025 2620403 .. 2620450 - -19.4  -2.56046   CGAAACGTTAATTTA CGTTAATGTTGTGTGCCGGGTGC AAT GCATCCGGCACACAACATCA-CA CCATATCCAGCGCAG 100 21
SH05_RS13010 NONE
SH05_RS13005 2617074 .. 2617107 - -12.7  -2.95341   AGGTCAACATTAAAT     CTGTAAAACACAGAT AATG ATCTGCGTTTTACAA      CTCAGATCACAATTA  93 284
SH05_RS13000 NONE
SH05_RS12995 NONE
SH05_RS12990 NONE
SH05_RS12985 NONE
SH05_RS12980 NONE
SH05_RS12975 2610549 .. 2610568 -  -2.2  -2.85351   TCTTTTTACATCACA            TTAGCGCGA TTA TCGCA-TAA            CCGATGTTTACTTTC  41 112
SH05_RS12970 2609677 .. 2609698 - -10.9  -2.57261   TAAAAAGGTAGCAAT           TGCGGCAAA TTCA CTTGCCGCA            TCTTTATCATCATTT  76 87
SH05_RS12965 2607928 .. 2607940 -  -4.7  -3.28712   TGCCTTTTTTGATAA                CGGCC GTC GGCAG                AAAACCTCTCTCGAT  51 370
SH05_RS12940 NONE
SH05_RS12935 NONE
SH05_RS12930 NONE
SH05_RS12925 2600592 .. 2600622 -    -7  -5.81412   TCCATGCAAAAAAAA       TATCCAACGAAT TTTCTTG ATCCGCTGGATA       TTTCAGAATATGACT 100 66
SH05_RS12920 2599388 .. 2599413 -  -8.3   -2.7644   ATTTAAGTTGTAAAT         GCCTGAT-GGCG CTA CGCTTATCAGGC         CTACAAATGGGCACA  64 107
SH05_RS12910 2597285 .. 2597301 -  -3.6  -2.84051   CGAGCCGGATGAAAG              TCAGCG GCAGG CGCTGG              TGCGTGAGTTACGCG  45 251
SH05_RS12900 2596396 .. 2596411 -  -4.6  -5.09895   CAGCGATCCAAAAAA              TCCGGT AGCA ACCGGT               GAACGCGGCCCGGAC  81 61
SH05_RS12850 NONE
SH05_RS12845 NONE
        astD NONE
SH05_RS12835 NONE
SH05_RS12830 2581589 .. 2581614 - -16.3   -3.2827   AAGAAAGCAACTTAA         TACCCGCAGAA TGAT TTCTGCGGGTA          AGTATTAGCTTATTT 100 30
SH05_RS12825 2580730 .. 2580780 - -19.8  -5.26907   GAAGAGAAAAGAAAA CCGCCGATCCTGTCCACCGCATTA CTG CAAGGTAGTGGACAAGACCGGCGG TCTTAAGTTTTTTGG 100 49
SH05_RS12820 2579782 .. 2579796 -  -5.6  -3.22774   GAGAGCCATGAGGAA               CATGCG CTA CGCTTG               CGCCAGTCTCTGGAG  52 255
SH05_RS12810 2578847 .. 2578863 -    -3  -4.74103   TCTGGAAGGGAAAAA             CGTACCT CAAC AGGT-CG              CCAGAACAATAGAGA  71 80
SH05_RS12800 2577532 .. 2577547 -  -7.5  -5.78622   TCAGGCCAAAAAAAA              CCGGC GCAATG GCCGG               TTTCCGTTGTTACTC 100 60
SH05_RS12795 2576898 .. 2576917 -  -7.9  -4.62904   AAATACCCTTAAAAA            CCGCAAT TTAAAT ATTGCGG             TATTGATTTATGAAA  86 71
SH05_RS12790 NONE
SH05_RS12785 NONE
SH05_RS12780 2574227 .. 2574239 -  -3.3  -4.14627   CCCGGACATAAATAA                TCCAG CAA CAGGA                CAGATATGTGAATTG  58 55
SH05_RS12775 NONE
SH05_RS12770 2572006 .. 2572039 -  -5.9  -3.39895   CTTTGTAGGAATTAA     TCGCCGGATGCAAGG TTCA CGCCGCATCTGGCAA      ACATCCTCACTTACA  57 36
SH05_RS12760 2569055 .. 2569073 - -12.4  -3.06796   TTTCAGGTCATGTAA             CTCCCGGC AAA ACCGGGAG             GTATGTAATCCTTAC  93 37
SH05_RS12755 2567629 .. 2567639 -  -8.2  -3.30619   AACCATTGGTCAGAA                 CGGC TGC GCCG                 GTTTGTATCCGGCAA  65 379
SH05_RS12735 2564338 .. 2564354 - -10.8  -2.64099   TGGGTTGAGGATAAT              GGCCGC TCCGT GCGGCC              TTTTGATTAAATAAA  76 32
SH05_RS12715 2560956 .. 2560980 - -12.1  -3.25317   TGACAAACGAAGACA          GCCAGACCGCA TAA CACGGTCCGGC          AGATAATTTTACATG  89 34
        thrS NONE
SH05_RS12695 2555715 .. 2555742 - -14.2  -4.23707   ACAAAGGCGAACAAA        GCCTGTGAAGCC CGAA GGCTCCACAGAC         AGTGCTACTTGAAGG 100 43
SH05_RS12690 2555448 .. 2555462 -  -2.9  -4.87291   TATTCTAATTAAAAA               GTTAA AAACG TTAAC               GGCTTATGCGTACGG  67 29
        rplT 2555027 .. 2555045 - -10.3  -4.54727   GCGTTGAAACGAAAA             GAGGGAG ACTAG CTCCCTC             TTTCAACTGGCTTAT 100 37
SH05_RS12680 NONE
SH05_RS12675 NONE
        pheT NONE
        ihfA 2550885 .. 2550899 - -12.8  -5.80951   AGTGAAAAGAAAAAA               GGCCGC AGA GCGGCC               TTTTTAGTTAGATCA 100 43
SH05_RS12660 NONE
        btuE NONE
SH05_RS12650 2548465 .. 2548477 -  -2.7  -3.07895   CCGATTTTCAAGATA                CTAAT GAA ATCAG                ATGGTCGAAATCAGC  44 22
SH05_RS12645 2547893 .. 2547919 -   -21  -3.79747   GTATTCAGGAGTAAA         TGGACGGCGATG TAT CATCGCCGTCCA         TTTTTCGACATACTA 100 38
SH05_RS12640 2546903 .. 2546915 -  -3.3  -3.55261   GGGTAACAAAAGACA                GGGTC ATA GATCC                TCCTGTTTGATAGTG  49 82
SH05_RS12635 2544962 .. 2544990 -  -3.9  -3.73402   ATATTTGTCAGCAAA       TCC-GCAATGGC TCTACG GCGATTGCTGGA        ATTATGGCGGAAAGT  56 508
SH05_RS12615 2542816 .. 2542827 -  -2.2  -3.86822   GAACGGTTTGAGAAA                CACA TTTC TGCG                 CATTTATCTTTGCAT  51 29
SH05_RS12610 2540367 .. 2540391 - -16.4  -3.54475   TCGGGGATCACATAA          CCCCGGCGAC TAAAC GCCGCCGGGG          ATTTATTTTATTTCT 100 33
SH05_RS12580 2534999 .. 2535031 -  -6.3  -4.90869   ATGAGCAAGCAAAAA      CAATATATGCCGGAT AAA ATACGGCGTGTATTG      CGGTTATACAACCGC  80 63
SH05_RS12575 2534014 .. 2534054 -  -8.3  -3.16387   ATCAGAACAAATAAT CTGCAGGCGGCGCAGCTT CTTAAC AAACTGCGCCGCCAG-AT  TTATCCAACAAGACT  67 26
SH05_RS12530 NONE
SH05_RS12525 2520811 .. 2520842 - -12.4  -3.31726   CGCTTTTAGACAAGA      CCTGCACAGTATAC CACC GTTTACTGTGCAGA       TAATGACCAAAAGCA  95 70
SH05_RS12520 2520344 .. 2520374 -   -17  -5.05116   TCAGAAATAAGAAAA       CCCTTAAGTCTGTG CGA CACAGGCTTAAGGG       TTTCTACCCCATCCG 100 250
        sufA NONE
SH05_RS12510 NONE
        sufC NONE
SH05_RS12500 NONE
SH05_RS12495 NONE
SH05_RS12490 2514488 .. 2514506 -  -3.9  -3.60627   GCAGGTCAGTGTAAA            CATTGACC ATCC GG-CAATG             TGAGCCAACCGGATG  53 58
SH05_RS12485 2513344 .. 2513362 - -14.6  -4.74103   CTGTGAAGTGAAAAA             TGGCGCAC ATT GTGCGCCA             TTTTTTTTGTCTGCC 100 49
SH05_RS12470 2510564 .. 2510592 -   -14   -3.4945   ACTGAAGCAAGAATA        TCAGGATGAAGC TTACC GCCTCATCCTGA        ATGGTCATTTTACCA 100 30
SH05_RS12465 NONE
SH05_RS12460 NONE
SH05_RS12455 2506740 .. 2506756 -  -5.2  -3.54129   GACATCTCCCTGAAA              TTTCAG GGGTT CTGAAA              CTGCTCTACCTCGAA  57 11
SH05_RS12450 NONE
SH05_RS12445 NONE
SH05_RS12440 2504189 .. 2504206 -  -4.9  -4.62002   AGCAATTACAGAAAA             CAGGGGAT GAA ATCCC-TG             ATGTTGGCGAAGATT  72 231
SH05_RS12415 2500505 .. 2500528 - -13.9  -3.96841   CGCTAATAAAGACAA          GGCGCAACC TTCACG GGTTGCGCC           TGTATTTTTACGCAG 100 33
SH05_RS12405 2498228 .. 2498242 -  -4.2  -3.53224   GAGTGGCTCGCTAAA               GGCTAT TCT ATCGCC               CCCTCTCCGGGGGCG  52 49
SH05_RS12390 2494034 .. 2494046 - -10.5  -3.06796   CGTTATCTGATTGAA                CGCGG TCA CCGCG                AAATCGGCGTCATCC  72 510
SH05_RS12380 2493038 .. 2493072 -    -3  -4.96276   ACAAAAAAATGAAAA     TAACAAAAAGAGAAAA CAC TTTTGCCATTTTGCTA     ACAAACAGGAAGGAG  71 74
SH05_RS12375 2491707 .. 2491724 -  -9.1   -2.5955   AGGTCGGATAAGGCA             CTCGCCG CATC CGGCAAG              ATAAATCGCACGTTG  66 87
SH05_RS12360 2489377 .. 2489404 - -15.7  -3.09116   GGGATAGAGAAAGGA        CTGACGGATGC CCGTTC GCATCCGTCAG         TATTGCAGGACGGAT 100 40
SH05_RS12330 NONE
SH05_RS12325 NONE
SH05_RS12320 2479704 .. 2479727 - -10.2  -2.52516   CCCGTCATCATCAAC          CTGCCGCCCG TGAG CTGGCGGCAA           TTGTCTGGCGGCTGT  65 97
SH05_RS12300 2476013 .. 2476048 - -11.8  -3.90744   CTCCGCGCTAAATAA    GTTTGCGTGTGGTCAG GTTA CTGACCACACGCCCCC     TTCATTTCACCCTTT 100 32
        anmK 2474142 .. 2474155 -  -2.4  -3.63367   CGCGGTAAGAAAAAT               TCAG TTAACT CTGA                TATCACGGGTTAGCG  49 28
SH05_RS12285 NONE
SH05_RS12280 2472997 .. 2473009 -  -3.4  -3.77196   GTACCAGCGATTAAA                GCAA GATTT TTGC                ATCTTTTCAGGGTGC  53 32
SH05_RS12275 2471571 .. 2471600 - -10.7  -4.82901   TTCCCTGTATAAAAA       CCAGGGGGAGTGA TTTC TCACTCCCCCTTT        CCACTTAATGCATTA 100 38
SH05_RS12270 2470322 .. 2470332 -  -5.4  -4.36914   TTTCCCGCTATAAAA                 CCAT CGA ATGG                 CTGAATTACATCGCC  70 384
SH05_RS12200 2458900 .. 2458933 - -15.5  -3.33696   GTCGCCGCGAAGTAA     CAAAATGGATGGTGC AAAT GCACCATCCATTTTT      CATGCAAGGCACAAA 100 25
SH05_RS12180 2453739 .. 2453755 -  -5.1   -5.3104   TCAGTAAAAATAAAA              GGCAC CGCCTGT GTGCC              ACATTTTTTATCATT  84 87
SH05_RS12175 2452791 .. 2452802 -  -5.8  -3.01924   CATTGCTGTTGAATA                GTGC GAAG GCAC                 ACTCTATTCGTATAC  54 161
SH05_RS12170 2451958 .. 2451973 -  -5.4  -3.72078   CCATAAAATAAGCAA              CCGAAC GTTC GTTCGA               GCGTATTGGGAACGA  59 179
SH05_RS12165 NONE
SH05_RS12160 NONE
SH05_RS12155 2447220 .. 2447243 - -13.9  -3.72051   GTCAACAATCTGAAA          CGCCGGAGA TTTTTC TCTCCGGCG           TTATTTTTTACTTCA 100 33
SH05_RS12140 2442374 .. 2442389 - -11.8  -5.47218   TGCCATGTAAAAAAA              CCGCCC CGAA GGGCGG               CTCTGTTTATTTCAC 100 32
        fumC 2440760 .. 2440789 -  -4.3  -3.55444   TGGTGAGTTGTTAAA       TTACGATGCCG-AC AAT GTGCAGCACCGTTA       TAAACCTCAGGCGCA  53 86
SH05_RS12115 2437277 .. 2437297 -  -8.3  -4.06419   CCTGGCGAGAAAGAA            GTGATCGAC CTG GTCGATTAC            TTACTTACCAGTTGC  77 88
        pntA NONE
        pntB 2430609 .. 2430634 - -13.3  -3.69068   CGATCTCAATAAAGA         GTGACGGCCTC AGCA GAGGCCGTCAG          GGTTACAGAGCTTTC 100 28
SH05_RS12080 NONE
SH05_RS12075 2428455 .. 2428478 - -15.3  -3.65722   AAAATAATGTTCAAA          CGCTGCCCG ACAGCG CGGGCAGCG           TCTTCATCAGGCAAG 100 32
SH05_RS12050 NONE
SH05_RS12045 2422932 .. 2422952 -  -3.3  -3.16345   AACCAGGAAAATAAT            TAACCTTGA AAG TCTAAGTTA            TGCTTTCCTGGCCCA  46 82
SH05_RS12040 2422121 .. 2422145 - -15.8  -2.93585   TGATATGTGAAATGA          CCGGGGAGTA TCAGC TACTCCCCGG          TTTATTGATTGCCTG  95 69
SH05_RS12000 2412117 .. 2412139 -  -8.4  -2.89565   AATTTCAGATAATTA           TCTCCCCGGA GTA TCAGGGGAAA           GGTCTGGCAACCCGT  61 298
SH05_RS11985 2410912 .. 2410925 -  -2.3  -3.99153   TGATCACAAAAAAAG               GCGTA TATT TGCGC                TGTGAATGGTTGACA  53 112
SH05_RS11980 NONE
SH05_RS11975 2408131 .. 2408150 -  -4.2    -4.431   GACGCAGCGATAAAA            CG-TGCCGG ACT CCGCCATCG            AAAATCATATCAGTC  66 436
SH05_RS11960 2405801 .. 2405823 -  -9.9  -2.86049   CAACAAGGGAAGAAG          GCGCTGTGGC TGTA GCCACAGC-C           ATTGAAGCTGGCGAC  72 164
SH05_RS11945 2404356 .. 2404381 -  -7.5  -4.24963   CACAATCATGGAAAA         GGCTTACGAAG AATA CTTCGAAGGCC          TTGCCGAAGGCGAAG  75 354
SH05_RS11925 NONE
SH05_RS11920 2402630 .. 2402667 -  -4.2  -3.24447   GACAGTCCACAAAAC   TGCCAACTTCCGCT TCTTGCTCTT AGCGGACATTAGCA    TAGGCTATTTACCAT  51 362
SH05_RS11910 NONE
SH05_RS11905 2400968 .. 2400981 -  -2.4   -2.9732   TGTCAACGCAAAGCA               GAAG TGTCAC CTTC                GGTGCGAAACAGAGA  42 55
SH05_RS11900 2400700 .. 2400713 -  -9.5  -5.77734   AAATAAAAACAAAAA               CCCGC CGAA GCGGG                TTAAGTGCGGGTGCG 100 96
SH05_RS11895 NONE
SH05_RS11890 NONE
SH05_RS11885 NONE
SH05_RS11880 2398021 .. 2398052 - -12.4  -3.64822   ATTGCCCCATTTAAA      GCACAAAACCCGCT CATC AGCGGGTTTTCTAC       TTTTTCTTAACGTCG 100 127
SH05_RS11870 2396706 .. 2396719 -  -9.5  -5.60689   GCAGATAATAAAAAA               CCCGC CTGA GCGGG                TTTGAGATTGTGGTG 100 310
SH05_RS11865 NONE
SH05_RS11860 NONE
SH05_RS11855 NONE
SH05_RS11850 2394463 .. 2394473 -    -4  -4.03413   ACTGCTTCAGATAAA                 TTTG TAA CAAA                 CCAGAACACCATTAA  59 247
SH05_RS11845 2393899 .. 2393912 -  -8.1  -5.31059   ACACCAAGCAAAAAA               GCTCC CGAA GGAGC                CTTCATTTTCACTTT 100 233
SH05_RS11840 2393525 .. 2393535 -  -5.4  -3.95836   ACGTGTAAAAGATAA                 GATG AAA CATC                 GCAATAATCAACATA  63 109
SH05_RS11835 2393229 .. 2393244 -  -6.8  -4.95302   TCAAATATAACAAAA              CCCCGT AAAA ACGAGG               TTTATGGATAAATTT  86 55
SH05_RS11820 NONE
SH05_RS11815 NONE
SH05_RS11810 2389885 .. 2389897 -  -3.4  -4.78477   ACATATAAAAAATAA                TCTC GGTGT GAGA                TGCTTTACGTCTTCC  68 103
SH05_RS11795 2386635 .. 2386658 -  -9.6  -5.16841   TTATATGAATAAAAA          TCCCCTCTCC GGTA AGAGAAGGGA           TTAAGGGTTTACAGA 100 34
SH05_RS11790 2385001 .. 2385011 -  -6.8  -3.73224   TGACCGCTGAGCAAA                 TCCG CCG CGGA                 AAAACCGTAGTTGTT  66 132
SH05_RS11770 2380960 .. 2380988 - -13.2  -2.83271   TTACTGCTATAACCA        GGCTGGCCTG GCGATATCT CAGGCCAGCC        ATTGGTGGTGTTTAT  91 37
SH05_RS11760 2379729 .. 2379758 -  -8.6  -2.50779   AGCATAACCCAATAC       CCTAATGGCCCA GTAGTT CAGGCCATCAGG        CTAATTTATTTTTAT  63 37
SH05_RS11755 2378490 .. 2378507 - -10.5  -5.76949   GACGGCGAAAAAAAA             CCGCCAG TAAA CCGGCGG              TGAATGCTTGCATGG 100 143
SH05_RS11740 2375631 .. 2375643 -  -7.7  -3.08522   CAGCTAGTTGAAAAC                GTGAC AAC GTCAC                TGAGGCAATCATGAA  63 285
SH05_RS11720 2373890 .. 2373903 -  -9.5   -3.6707   ACGCAATAGTTGAAA               GGCCC ATTC GGGCC                TTTTTTAATGGTACG  78 30
SH05_RS11700 NONE
SH05_RS11695 NONE
SH05_RS11690 NONE
SH05_RS11685 2366498 .. 2366514 -  -5.9  -2.52896   TCATGGTTTAATCGA              GGAAAAA CGC CTTTTCC              TGGATCATAAAGTGG  52 83
SH05_RS11680 2364859 .. 2364874 - -10.4  -4.56978   TGGTGAAATAAGAAA              CCCGGT CGAA ACCGGG               TTCAGAAGTAACGGT 100 45
SH05_RS11670 2363691 .. 2363704 -  -6.7  -3.03771   TCAGATGCTGGAAGA               GCAGT ATCC ACTGC                AAGAGAACGGACAGA  56 94
SH05_RS11630 NONE
SH05_RS11625 2354243 .. 2354276 -  -6.1  -4.72333   AACTATACTCAAAAA     CTAACAGCCACGGTCA TCA TGAT-GTGGCTGTCAA     TGAAACTATAACCCA  77 31
SH05_RS11620 NONE
SH05_RS11615 2348296 .. 2348320 - -14.3  -3.36452   AGTCGGCAATATTAA          GCCGCATGCCA TCT CGACATGCGGC          TTATACGGTTTACCA 100 35
SH05_RS11610 NONE
SH05_RS11605 2346234 .. 2346245 -  -5.8  -2.62158   TTAAATAAGTAACAG                CACC CTCT GGTG                 TTTTCGTATGCAGTG  52 299
SH05_RS11600 2345662 .. 2345691 -  -5.7  -2.71731   TTGACGGTGTAACCA       CTCATTCGACTGT AGGC ACTGTCGGATAAG        TTATAAAAACCTTGC  52 356
SH05_RS11595 NONE
SH05_RS11590 NONE
SH05_RS11585 NONE
SH05_RS11580 2342245 .. 2342260 -  -7.6   -3.6164   AACATGGATATATAA              GAGTAG GGGA CTACTC               TCTTTCTATTTTTAA  70 250
SH05_RS11575 2339828 .. 2339858 - -12.8  -3.28537   ATAGTCAATGAGGAA       TTCTTCTGCTGT GCGGATG ACAGCAGAAGAA       ATGAGAAGAGGCATT 100 39
SH05_RS11570 2339368 .. 2339384 -  -4.5  -4.08767   TTTATCTCCTTAAAA              CAATAAA GTT TTTATCG              ATACTTTTTTAACAT  63 68
SH05_RS11565 2338521 .. 2338543 -  -8.4  -2.53831   CGCCTAAAAACAACG           CGGGGCAG GGAATGG CTGCCCCA           TTTAATTCTTACGCA  63 73
SH05_RS11560 2336475 .. 2336494 -   -15  -2.76815   ATCTCGCTCAATAAG            GCGGCGGA AAAA TCCGCCGC             ATGAAGGTTTAGTTA 100 38
SH05_RS11555 2335219 .. 2335244 - -10.5  -3.80841   ATGATGATGACGAAA         CACCCGACA GGAATTTA TGTCGGGTG          CCTTGTTAAGGTCAT  86 79
SH05_RS11550 NONE
SH05_RS11545 2330875 .. 2330892 -  -6.2  -4.13945   ATCTCCATGCGAAAA             CCGGGC GAATTT ACCCGG              TTAAGTAAAATCCGA  69 45
SH05_RS11540 2328041 .. 2328065 - -13.6  -3.08201   GAATATTGCTAAAAT          CCCCGCCAAC GATGT GTTGACGGGG          CTGTTATTATTTTGG 100 32
SH05_RS11535 NONE
SH05_RS11530 2326262 .. 2326291 - -15.1  -3.57387   AACAGACTTTGGAAA       TTGTCCCGAAACG GGTT CGTTTCGGGACAC        CGTTACCGTTAAACG 100 44
SH05_RS11525 2324571 .. 2324593 - -13.5  -4.81685   AGCAAGCACGAAAAA           GGGAGCGAT GAATT ATCGCTCCC           TTGTCTTATAACCAT 100 51
SH05_RS11520 2323115 .. 2323153 - -11.8  -3.07962   TGGGATAGTTTAAGA   GGGTAACAAGCCGGTG GGTAAAG CACCGGCTTGTTACAA   AGTAAGAATGGGAGT  86 41
SH05_RS11515 2321430 .. 2321441 -  -5.8  -3.40597   TGGCGCATCTAAAGA                CTGG CTTT CCAG                 AGTTCAACACGGTTT  59 7
SH05_RS11510 2318972 .. 2318985 -  -9.5  -4.55798   CACGTTAAATGAAAA               CCCGC GAGT GCGGG                CGAGAGGAATTTGTC  95 39
SH05_RS11505 NONE
SH05_RS11500 NONE
SH05_RS11495 NONE
SH05_RS11490 NONE
SH05_RS11485 2313693 .. 2313703 -  -5.4  -2.80612   CGTAACGTTAATAAC                 GTGT CAG ACAC                 TTATAACCTCCTGCT  50 18
SH05_RS11480 2312686 .. 2312698 -  -3.3   -3.6682   TCTCAGGTACTGAAA                GCGGA AAT TACGC                TGGATTACCAGTTGA  51 104
SH05_RS11470 2311668 .. 2311679 -  -5.8  -3.32946   GTTTTAAGGACAACA                TCGC CGTA GCGA                 AGAAACACGTGCTAA  57 76
        rpsV 2311437 .. 2311458 - -13.1  -5.71295   AGATAAAAACAAAAA           CACCATTGC GCAG GCAATGGTG            TTTAATCGTCATTGA 100 58
SH05_RS11460 2309608 .. 2309631 - -14.6   -3.4404   AGGGAGAGGGAAATA          GCCCGGTAGC CTTC ACTACCGGGC           GCAGGCTTAGATGGA 100 32
        adhP NONE
SH05_RS11450 2307903 .. 2307954 - -10.3  -2.63257   ATTGTAGACAACGTA GGCTTTGTTCATGCCGGATGCGGCG TGAA CGCCTTATCCGGCATGA--AAACCC TTCAAATCCAATAGA  74 135
SH05_RS11425 2301926 .. 2301948 - -13.4   -3.1706   AATTTATCTGATTAA           CTACCGGGCC GTA GACCCGGCAG           TTATTTTAACCACGA 100 31
SH05_RS11420 NONE
SH05_RS11415 2300032 .. 2300053 -  -3.1  -3.54436   CAGACACTTATAGAA           TTAGTGA TGATTTAT TCACTAA            AAAGGCCATGAACTG  49 22
SH05_RS11410 2298264 .. 2298278 -  -6.4  -2.66964   TTACTCATGACATGA               CTCCTG CTC CAGGAA               TGAATTGGGATCTGA  54 85
        narZ NONE
        narH NONE
SH05_RS11395 NONE
        narI 2291528 .. 2291550 -  -6.2  -3.14132   CTGCGGTTTCATTAA           CGTTCTCCTG TGA CTGGAGAACT           ATCATAGCCTGCAAG  57 78
SH05_RS11385 2290587 .. 2290605 -  -2.3   -2.6927   ATCCGGCATACATTA             GCCCGGT TGTAG ACCTGAC             AGGCGAAGCGCATCA  40 51
SH05_RS11375 2288772 .. 2288785 -  -8.1  -5.31855   GACGAACAACAAAAA               GCAGC ACTT GCTGC                AGATATTACCGACGT 100 188
SH05_RS11335 2279923 .. 2279935 -  -4.8   -3.6682   GCCGACTCATCCAAA                CAGC CTGGC GCTG                TCTGCCGATGGCAAA  55 237
SH05_RS11325 2276600 .. 2276619 - -11.4  -4.06903   AATCGTTAAAGTAAA            TGCCCGGC AAAT ACCGGGCA             TCAAGGTAATTACTC 100 35
SH05_RS11310 NONE
SH05_RS11305 2273141 .. 2273156 -  -7.6  -3.40403   TCTTTCTCACGATAA              GAAACG CATC CGTTTC               TTAAGCGCCTTTCTG  62 417
SH05_RS11245 2264455 .. 2264494 -  -7.8  -2.79831   TGAATCTGCATGATA  TTGCCTGCCGGGTAAGGCG TTA CGCCGCATCCGGCAT-CAA  ATGACTCAACGTTGT  61 31
SH05_RS11230 2260515 .. 2260532 -  -9.9  -2.94888   AACCCACCGAAATGA             TTCAGGC GACA GCCTGAA              CGTAGCAGGGATCCA  73 64
SH05_RS11220 2258843 .. 2258862 -    -7  -4.07568   CGGTGCGCCGTAAAA            CCCCATCC TTCA GGGCGGGG             ATATAAGGCGCGGTT  70 191
SH05_RS11195 2255017 .. 2255045 - -12.5  -3.28791   ATGTCGGGTGGACAA        TCCGCAAAGCAAC CAG GTCGCTTTGCGCA        ATGGTTTTATCCTTG  83 115
SH05_RS11180 2253596 .. 2253613 -  -2.6  -4.30719   GGCTGGTATAACAAA             CGCCCA AGTCTG TGGGTG              GAACCGCGTAACAAG  60 510
SH05_RS11165 2249790 .. 2249805 -    -9  -2.75229   GAAAATGTTCAAGGA              GGGATC GACA GATCCC               TTCACCTTTCAGAAC  67 34
SH05_RS11155 2247560 .. 2247582 - -14.8  -3.65199   AATCTGCTAGTCAAA           TGCGCGGGGA AAA TCCCCGCGCT           TGCCCTTACCTGGAC 100 31
SH05_RS11140 NONE
SH05_RS11135 NONE
SH05_RS11130 2245349 .. 2245370 -   -13  -3.43853   TTAATGAGTGAAAGA           GGCGGAGG TTTTTT CCTCCGCC            TGTGCGCGTCAGAGT 100 34
SH05_RS11110 2237909 .. 2237922 -  -2.3  -3.27498   TACAGTCCACATCAA               GACCG TGTC CGGTT                ATGCAGAAACAATGC  45 24
SH05_RS11065 NONE
SH05_RS11060 2223099 .. 2223113 -  -7.1  -4.58466   TTGATAAGGATAAAA               CCGCA GACAA TGCGG               CGGAATATTTCTTCG  77 499
SH05_RS10985 2207229 .. 2207250 -  -7.3  -4.90778   CTTAGTGAAATAAAA           GGGCAAC TATTCGCC GTTGCCC            TTCATTCACCGATTA  85 38
        tynA 2204709 .. 2204723 - -11.4  -5.32944   CTCATAAGTAAAAAA               CGGCAC CTG GTGCCG               TTTTTTTGTCTGAAA 100 44
SH05_RS10970 2202013 .. 2202039 - -15.3  -3.33815   ATCTGTTTTAACTAA         TTGGCGTTGCA GTACA TGCAACGCCAA         TTAGTTAGCGGAATT 100 30
SH05_RS10950 2197490 .. 2197512 - -14.9  -2.74012   GGATTATCTGAATCA           GCTCCCCTG GAATG CAGGGGAGC           GGCAAGATTAAACCA 100 33
SH05_RS10945 2196628 .. 2196643 -  -4.6  -5.27769   ATAAAAAAGTAAAAA              TGCGGG GCAA CGCGCA               GGACAGCTCTCGACG  82 369
SH05_RS10935 2192869 .. 2192888 - -11.4  -4.16226   CATATAAAAAGACAA            GCCCGAAC AGTC GTCCGGGC             TTTTTTTTTAGAATT 100 63
SH05_RS10930 2191399 .. 2191417 - -10.2  -5.03945   GAATAAGCAGAAAAA             GCCCGCCA TAA CAGCGGGC             AGGAGGATTTAGAAC 100 34
SH05_RS10925 2190824 .. 2190843 - -10.7  -4.95957   GAAATGAATCAAAAA            GCCCGCA GCAATG TGCGGGC             GTTAGTGTCAGCGCA 100 33
SH05_RS10920 2189487 .. 2189497 -  -2.6  -2.77118   GAGACCCAAAATCGA                 TTTT GTG AAAA                 ATGGCTTTAACTCGG  42 185
SH05_RS10915 2188478 .. 2188494 -  -6.5  -5.80003   GGAAGAAACAAAAAA              CAACCTG ATG CAGGTAG              CCAGTGAGCATATTG 100 281
SH05_RS10900 2185083 .. 2185095 -  -6.9  -3.48276   CGCGGTGGCACAGAA                CACGG CAG CCGCG                AAGAAGTCAGCCAGT  63 142
SH05_RS10895 2184472 .. 2184484 -  -3.3  -4.19238   TTCCCAAGGGGAAAA                CGCAC GAC GTGCT                GACCGGAAGTGATGA  60 192
SH05_RS10885 2183364 .. 2183375 -  -5.8   -2.7927   AAACACATCGAATCA                GCCT ATTT AGGC                 TATTTTTTCCACCAT  53 62
SH05_RS10820 2175397 .. 2175416 -    -2  -3.90744   GGGGGGGTTAAATAA            CGGAATCC AGGA GTTTTCCG             TCAGACCATATAAGT  51 41
SH05_RS22975 2174635 .. 2174656 -  -7.4  -3.64822   ATCGCTGTATTTAAA           GATTTCCT TAAAAC AGGAAATC            TTATTATCACTTCTC  66 192
         kil NONE
SH05_RS10805 NONE
SH05_RS10800 NONE
SH05_RS10795 NONE
        recT 2169613 .. 2169653 -  -8.3  -5.24129   TTTTCTCATAAAAAA  TATTTCAAGTTGGCGGTGC ATT ACACCGCCAGGCTGAATTA  TTCCTCTGAATTATC 100 23
         lar NONE
SH05_RS10780 NONE
SH05_RS10775 2168647 .. 2168657 -  -3.2  -4.04318   TCCAGATATCACAAA                 GCTC TCC GAAC                 GTTTTTATGACTCTC  56 272
SH05_RS10770 NONE
SH05_RS10765 2166646 .. 2166669 - -14.6  -2.80074   GCCTCCATAAGAGTA          GCCCGATACG CTTG CGCATCGGGC           GCTATCCTGGTTATT 100 36
SH05_RS10745 2162157 .. 2162167 -  -2.4  -4.21194   TCGCACTACGTAAAA                 CGGC GCA GGCG                 AAGCAAGAAAACTGG  58 88
SH05_RS10735 2161332 .. 2161360 - -12.5  -5.63504   AACTGCATAAAAAAA        TAGAGTCTGTCGA CAT CCGCCAGACTCTA        CAGTACACACAGCAG 100 53
SH05_RS10725 2158929 .. 2158941 -  -3.3  -2.94099   TTCCTGCATCAGATA                CCTCG CGT CCAGG                GAAAATTGAGCGCGG  44 6
SH05_RS10720 NONE
SH05_RS10715 NONE
SH05_RS10710 NONE
SH05_RS10705 2155323 .. 2155340 -  -8.5  -4.14739   CTATCTATTTGAAAA             CCCTTAA GTTG TTAAGGG              TAACTTTACATAAAA  79 73
SH05_RS10700 2154371 .. 2154419 -   -12  -3.23638   TGAAACAGTGATGAA CCTTCTGCCAGATCAATAAATC AGAAA AATTTAATGATATGACAGAAGG ATAGTGAGTTATGCG  86 47
SH05_RS10695 2153298 .. 2153319 - -10.1  -5.30155   GCAGTAAGTAAAAAA           TAGGCCCGA TAAC TCGGGCCTT            GTCAGTTATTGAAGA 100 45
SH05_RS10680 2150334 .. 2150356 -  -3.5  -3.63589   GAAAATACCGTTAAA          GCG-CGTAAT GCCG ATTACAACGC           GGCAGAAAAAATCCT  53 227
SH05_RS10660 NONE
SH05_RS10655 NONE
SH05_RS10650 2145206 .. 2145230 -  -4.1  -3.62597   GCGATGCTTGAACAA          CCGCTTCCTGC GCA GGACGATGCGG          CGCTGGAGAATTTTA  53 332
         tpx 2143938 .. 2143964 - -19.6  -3.06737   GAGTAAGCGCGAATA         TGCCTGATGGTG CAA CACCATCAGGCA         TATTAAATTATGCTT 100 33
SH05_RS10620 2138571 .. 2138612 -  -6.5  -3.92373   TATCCGATCTATAAA TGTAGGCCGGATAAGATGC GCTA GCATCGCATCTGGCATTCA  GGCAAGGTAGCTGGT  67 43
        pspF 2122337 .. 2122355 -  -2.3  -4.54047   CGATTGCACAGAAAA             TCCAGCA ACGCG CGCTGGC             GCAGGGGCTGCTCCT  63 272
SH05_RS10505 2115143 .. 2115154 -  -7.2   -4.0031   AGGCCGATGAAACAA                CCCC GCAA GGGG                 TATTACGCGTTTTTC  72 28
SH05_RS10500 2113419 .. 2113460 -   -16  -3.12351   TCTTTTTATAGTTAA TGGCGCGGCGCGTTACCCT CAGGC AGGATAATGCGCCGCG-CA TCCGACTATTACGTT 100 34
SH05_RS10495 2113059 .. 2113070 -  -2.2  -3.31144   GCTTTATCCGGACAA                CGAT ACTG ACCG                 ATCGTCTGCAATTAA  45 45
SH05_RS10490 2112824 .. 2112835 -  -2.2  -3.20348   CTTACTAATATTTAA                TGAC ATTT GCCA                 TTACCGTTTGTGTTC  43 10
SH05_RS10485 NONE
SH05_RS10480 NONE
SH05_RS10475 NONE
SH05_RS10470 NONE
SH05_RS10465 NONE
SH05_RS10460 2106946 .. 2106958 -  -4.8  -3.72374   CCCCAGCAACAAACA                GGCT CATAC AGCC                CCTAACCCTTTCATG  57 141
SH05_RS10455 2105879 .. 2105899 - -12.5  -3.71149   GTATAACAGAGATAA            CGGGCGGCA GAA CGCCGCCCA            TCTTTACCAACAGAA 100 44
SH05_RS10450 2104606 .. 2104639 -  -5.2  -2.78384   TTGGTGGCCATTAGA     GCGGCTGACAGTTT TACGCG AATCTGTCTGACGC      GGCAAGGTTAATATG  50 33
SH05_RS10445 2102610 .. 2102634 - -13.6  -4.42062   GAGCGGGGAAATAAA          CGGCCCATCC ATGAG GAATGGGCCG          TGAAAGGAGATTACG 100 36
SH05_RS10435 2100323 .. 2100353 -  -2.7   -4.8143   TGAATAATGCAAAAA       TTGCCGCTAAA AGAGAAGTG TTTAACAGCAA       CGGCTAATTATCATC  67 96
SH05_RS10430 2100087 .. 2100127 -  -3.2  -4.49756   CCTCAAATAGGAAAA  CCTGAAGGCACGATTG TTAAATCTC CCACGGTGCCTTCGGG  ATGTCTGGCGTAGAT  63 1
SH05_RS10425 2099087 .. 2099100 -  -3.8   -2.7263   ATTATTCCGTGAAAT               CTGC TCGCGC GCAG                GGTTATATCACGCAG  44 189
SH05_RS10420 2098660 .. 2098679 - -13.6   -5.0916   CGGTTAACATAAAAA            GCCACGGA TATA TCCGTGGC             TTTCGAATATTTTAC 100 123
        ribA 2094180 .. 2094214 - -11.6  -2.98947   TTGAAGTAACAACTA     TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA     TGAATTACACAATGC  83 48
SH05_RS10380 2091022 .. 2091039 -  -3.4  -4.41087   ACAATGAAACAGAAA             CGAAAC GGGAAT GTTCCG              TCGTTATTCCAGACG  62 185
SH05_RS10350 2086057 .. 2086076 - -11.4  -4.46775   GATGTAAAAGACAAA            CGCGAGGC TAAG ACCTCGCG             TTTTGCTTTAATCAA 100 33
SH05_RS10340 NONE
SH05_RS10335 NONE
SH05_RS10330 2083403 .. 2083423 -    -9  -3.02166   CGGTTAATCAAAGTA            TGCCGGAC GTCAT ATCCGGCA            TTTTTACAGATTAAT  68 36
SH05_RS10305 NONE
SH05_RS10300 NONE
SH05_RS10295 NONE
SH05_RS10290 NONE
SH05_RS10285 2072054 .. 2072076 - -11.2  -4.45261   TAAAGAAAGTTAAAA           TGCCGCCAGC GGA ACTGGCGGCT           GTGGGATTAACTGCG 100 32
SH05_RS10280 2071458 .. 2071479 - -13.7  -2.94144   TCTCCAGTGAAATCA           CTGCGAGCC ATAC GGCCCGCAG            ATGCAATTATCTTTA 100 69
SH05_RS10275 2070898 .. 2070916 -  -2.4  -3.16914   ACGATTCATGAAAAT             GTCCTCTT TAT AAAATGAC             TAAAAGTTAAAATTC  43 46
SH05_RS10270 2070339 .. 2070361 - -14.2  -4.84017   AATTCCGCACAAAAA           CGACCCCGTA ATA TACGGGGTCA           ATAAGGACATGGTAT 100 49
SH05_RS10260 NONE
SH05_RS10255 2067932 .. 2067966 - -10.8  -4.22948   AAAACCGACTTAAAA     GGAAAATCACAGGCGC GAT GCTACTATGATTTTCC     TGAGGAGAACAGAGG  93 77
SH05_RS10250 2067483 .. 2067512 - -19.5  -4.08144   TTCAGTAAGCAGAAA       GTCAAAAGCCTCC GACC GGAGGCTTTTGAC        TATTACTCAACAGGT 100 28
SH05_RS10240 2066195 .. 2066213 -  -8.9   -4.1023   AAGGCCAAACAAGAA             CACGGTT GCAAA AACCGTG             CCCTTAAATATTGAA  83 48
SH05_RS10235 2064634 .. 2064656 -   -12  -2.67958   CAATATCTAAATGTA           CTGGGCACCA TTG CGGTGCCCAA           TAAGTTTACTCTTCC  83 52
         cls NONE
SH05_RS10220 2062439 .. 2062470 - -10.2  -4.57073   GATCCGCTTTAAAAA      CAATAAGGGCTGAC AGTT GTCAGCCCTTTTTC       ACGCTAAAAGCGATT 100 43
SH05_RS10185 2052196 .. 2052217 -  -9.4  -4.77567   AGTGGCATAAGAAAA           CGGCTCCC TGTTGT GGAAGCCG            TTATAGTGCCTCAGT 100 120
SH05_RS10180 NONE
SH05_RS10175 2051269 .. 2051285 -  -2.1  -4.45696   GGTAAACAAAAAATA              CGGCCCC AGA AGGGCAA              TGCCGTTCACTTAAG  60 32
SH05_RS10165 2049331 .. 2049347 - -13.7  -5.55769   CCGGACAATAAAAAA              TCCCGCC GCT GGCGGGA              TTTTAAGCAAGTGCA 100 53
SH05_RS10145 NONE
SH05_RS10140 2044656 .. 2044669 -  -3.9  -4.00042   CTGGCGATTAAAGAA               TAATC GTTC GATTA                CCGTAAACAAAGACG  58 4
SH05_RS10135 2044383 .. 2044396 -  -6.7  -2.55015   ATCTCACCGAAGTTA               CCACA TCGC TGTGG                TGAATTATGGTGGTG  55 33
SH05_RS10130 NONE
SH05_RS10090 NONE
SH05_RS10085 2031951 .. 2031994 -  -3.8  -3.65812   GGTGGTGGAAGATAA CCAGGGGCAGCGTG-TCTCCT CCA ATGAGATCACGCTAACGCTTG TCGAACCGTTCGATG  53 76
SH05_RS10075 2029673 .. 2029696 -    -6  -2.64144   CTTGCACTGAAAGAG          GGCGGACGC ACCACAG GCGT-CGCC          TATCGACTGCCAGAA  50 441
SH05_RS10060 2027578 .. 2027606 - -12.5  -2.67209   CAGGAATTTATATTA        TCTCCCCCGATTA CCG TCATCGGAGGAGA        TATAACTGTCAGGCA  88 34
SH05_RS10055 2027028 .. 2027055 -  -9.8  -5.26155   AGATAAAGACAAAAA        TGGCCGCAGG CTGTTACC CCTGCGGCCG         GTTTCGGGCGCATAT 100 74
SH05_RS10050 2026493 .. 2026520 -  -9.8  -5.24799   TGATAAAGACAAAAA        TGGCCGCAGG CTGTTACC CCTGCGGCCG         GTTTCGGGCGCATAT 100 74
SH05_RS10045 2025959 .. 2025984 - -13.3  -5.36441   GCCGGATACAAAAAA         GGCCGCAGG CTGTTACC CCTGCGGCC          GGTTTCGGGCGCATA 100 75
        lolB NONE
SH05_RS10005 2018858 .. 2018872 -   -10  -3.62522   CAACGTCTGGAACAA               GGTGAC GTT GTCACC               GAAACTCAGCTTGCC  80 45
SH05_RS10000 2017762 .. 2017775 -  -9.5  -5.76633   TTACAGACAAAAAAA               CCCGC CGCA GCGGG                TCTTTGAGCCGGGTT 100 44
SH05_RS09995 2015672 .. 2015693 -  -3.7  -3.48629   ATGAAACGCAAAAAC           GCTTCGTTAC TCG GTAACGT-GC           TCATGGGGTTGGGTC  51 322
SH05_RS09985 2014708 .. 2014731 -    -9  -2.80499   TAATATCTTAATAAT          CAACCTGTTA TTGC TAACAGATTG           CAGAAATGGAAATAA  67 89
        ychF 2013509 .. 2013526 - -11.3  -4.98531   CGGTGAAATGAAAAA             TCCACGC AATT GCGTGGA              TTTTATATACTTTTG 100 86
SH05_RS09970 2009856 .. 2009870 -  -7.2  -3.44848   GCCGGGTATGAAAGA               CAGAAA CGA TTTCTG               ATACATCAGAGTGAT  66 106
SH05_RS09960 NONE
SH05_RS09955 NONE
SH05_RS09950 2004523 .. 2004556 -  -9.7   -2.8372   TAGTGCTGAGTAAAT     TG-CCGGATGACATCA GAA CGATGCCATCCGAACA     GTGGCTTAACCCTGA  72 31
        treA 2002473 .. 2002484 -  -4.4  -5.24129   TCTGTGTAGAAAAAA                CCAT AGCT ATGG                 TGTTATCTGCCGACA  78 86
SH05_RS09930 2000181 .. 2000191 -  -4.6  -4.02253   CCAATAAGCCAGAAA                 GCCG GTG CAGC                 CTGGGGCGTCGATCC  62 493
        ldcA 1998976 .. 1998997 -  -2.2  -4.03234   TGTCTCTTATATAAA           CCCTACCA TATTAG CGGCAGAG            ACAGCGTTTTACTTA  53 60
        cvrA 1996924 .. 1996946 -  -7.8  -2.78816   CCATTGCCCATGATA           GTGTCCAT TAAAAGG ATGGACAC           TATTTCCCCGGAACC  61 280
SH05_RS09900 1992546 .. 1992561 - -10.4  -4.00532   CGTTTAAAGAGCAAA              CCCCTC AAAC GAGGGG               TTTTTTGTTGTTTTT  89 39
        nhaB 1990012 .. 1990031 - -13.6  -3.92659   GGGCGAAAAGGCAAA            CCGGGCAT TTAT ATGCCCGG             TAAGTTGTTATCAAA 100 36
SH05_RS09885 1989340 .. 1989357 - -12.7  -5.14965   AGCGGCAGGAAAAAA             GCGCTCC CGCA GGAGCGC              CGAATGGATTAGCGA 100 34
        hlyE 1986234 .. 1986274 -    -7  -3.28791   AGCGCTCTGTCATAA  TGAGAGTTACCCGATA CCTTATTAT CAACAGGTAACTCTCA  ATCTTTAAAAAACGT  61 100
SH05_RS09845 1983663 .. 1983679 -  -2.3  -4.10855   AAAAGCCGCTGAAAA              CTTACAA TCA TTACAAG              GCTACGATCCCAGCG  56 283
        minC 1982255 .. 1982275 -  -3.3  -3.29973   TTAAAAAGGGATCAA            TTTAACGGT TGA ACGGTCAAA            GCGTTTTCGACTAAC  47 1
SH05_RS09830 1981414 .. 1981430 -  -3.7  -3.37464   CGAGTAATGCCATAA              CTTATCC TCC GAACAAG              CGTTTGAGGAAGCCT  49 10
        minE 1981093 .. 1981120 -   -15  -4.76041   GAGAGGGATGAAAAA        CTCAAGGCAGAG ATAA CTCTGCCTTGAA         GATAAATGCGCTTTT 100 50
SH05_RS09815 NONE
SH05_RS09810 NONE
SH05_RS09805 1979135 .. 1979157 -   -12  -5.08824   CCGTTAGCTAAAAAA           CCGCGTCG TATTCAT CGACGCGG           TACATATGAAATATT 100 39
SH05_RS09790 1975945 .. 1975961 -  -5.1  -4.13945   ATCCTTATTGCAAAA              CCCAG TACCGGG CTGGG              AGAAGTGCTTGTGAC  65 136
SH05_RS09755 1970976 .. 1971011 -  -9.3  -3.70109   TACACGACCCAATAA    TACTTTGTACAATAT ACGCTA AAATTGTACAAAGTA     TAAATAAGATTTCAG  78 144
SH05_RS09750 1969964 .. 1969977 -  -6.7  -3.17725   TTTGAAAAACAACGA               CCTGA TCCA TCAGG                ATAATAACCTCTTGT  59 242
SH05_RS09745 NONE
SH05_RS09740 1969333 .. 1969351 - -10.2  -3.71527   CGTTAAGTATTGAAA             CGGACGTG TGG CACGGCCG             TTGTTTTTATAAATA  82 80
SH05_RS09735 1968469 .. 1968487 - -12.4  -3.81137   TGTTAAATATTGAAA             CGGGCGTA TAA CACGCCCG             TTGTTTTATTTATGT 100 84
SH05_RS09720 NONE
SH05_RS09715 1965670 .. 1965721 -  -6.4  -3.17382   AACAACCAGACTTAA CGCTGTGCTGGATTACATTGACGC GGTG ACGGCAACAGATACCAGCACCGCG CCGGATGTCATCTGG  54 33
SH05_RS09660 1959097 .. 1959110 -  -8.1  -5.71983   TCAAGTATAAAAAAA               CCTGC CGAA GCAGG                TTCATAAACATTGAT 100 40
SH05_RS09655 1958432 .. 1958442 -  -2.6  -3.75617   AAAAAATTTGAAGAA                 TTAA TGC TTAA                 CTTTCTGTACCAGAA  52 225
SH05_RS09650 NONE
SH05_RS09645 1956521 .. 1956557 -  -2.1  -3.32997   CGGTGAGAAATTCAA    TGTGGCGTTGAGATGCT TAA AGGTTCACAACGCTACT    TTGCTCCATCCTTTA  45 13
SH05_RS09635 NONE
SH05_RS09630 1953662 .. 1953677 - -11.8  -5.15969   GCGGAATGTAAAAAA              GGCCGC GAGC GCGGCC               CCTTCACATACATCT 100 81
SH05_RS09620 NONE
SH05_RS09615 1950661 .. 1950696 -    -4  -3.14647   ACTCACGACATTGAA    CTTCAAGGCGGCGT-AT TCT ATCACGCAGCCTTTTAG    ATGACACCCTTTGTA  49 22
        mnmA NONE
SH05_RS09605 NONE
SH05_RS09600 1947443 .. 1947472 - -12.9  -2.81326   GATAATCTTAATAAG       CAG-GCCGGACAGC ATC GCCATCCGGCACTG       ATACGAGGTTTATTT  91 35
SH05_RS09595 NONE
SH05_RS09590 NONE
SH05_RS09585 1943944 .. 1943970 - -15.2  -4.32201   GGAAGTAAGCGAAAA         GGGATGCGGCAT GTG ATGCCGCATCCG         GCTTAAATCCAAACT 100 40
SH05_RS09575 NONE
        potA NONE
        potB NONE
        potC NONE
        potD 1938618 .. 1938639 - -13.7  -5.26875   TTGCTAACTAAAAAA           CGGGCGGTA ATAC CACCGCCCG            CTTGCTGAATTAACG 100 35
SH05_RS09550 NONE
SH05_RS09545 1937295 .. 1937306 -  -7.2  -3.28712   TTGTGGGCCGGATAA                GGCG TTCG CGCC                 CCATCCGGAATAATA  64 64
SH05_RS09515 1930936 .. 1930953 - -12.7  -3.30701   GTTTAGCAAATTGAA             TCGCCCC GGCT GGGGCGA              TGGCTTAGCGGGAGT  95 30
SH05_RS09510 1927278 .. 1927289 -  -2.2   -4.1822   GGTTATTGTAATAAA                CAGA TAAG CCTG                 AATTATGGATGGTGA  55 120
SH05_RS09505 1926197 .. 1926216 -  -5.8  -4.11304   GTAATTTATAAATAA            GCATTAAC CCTC ATTAATGC             CTGCTACTGCTGATT  68 87
SH05_RS09495 1924610 .. 1924633 -    -3  -4.17491   AGGAAACGGTTAAAA          CACCGCGTCA GGAG TGTCGCAACG           TCACAGTGACCCATC  60 458
SH05_RS09450 1916193 .. 1916210 - -12.7  -3.25823   CGTTGGGGAGACTAA             GGCAGCC AGAT GGCTGCC              TTTTTTACAGGTGTT  95 43
SH05_RS09375 1902789 .. 1902836 - -11.8  -2.64194   TATAAACCTGATAAT GGGCGGTTGGCCTGATAAGGCG TTTA CGCCGCATCAGGCCGCCAGCAC CGATTGCCGGATGCG  83 66
         rne 1898007 .. 1898026 - -11.4  -5.69793   AGATGAAATAAAAAA            GCCCTGGC AGTT ACCAGGGC             TTGATTACTTTGAGC 100 47
        flgA NONE
SH05_RS09295 NONE
SH05_RS09290 1886248 .. 1886272 - -15.7   -2.6563   CGGTGTAACAATGCA          TTCCGGCCTGC AGT GCAGGCCGGAG          ATAATCTTCAGATCG 100 33
SH05_RS09265 NONE
SH05_RS09260 1880231 .. 1880262 - -12.2  -4.55016   AGAAAAAACTGAAAA      CGGCGGCAACCCGC GAAT ACAGGCTGCCGCGG       CGGGTCAGGATTAAA 100 36
SH05_RS09255 1879557 .. 1879572 - -11.8  -4.91852   TGCACGAAAAATAAA              GGGCGC GAAT GCGCCC               TCGTGATTAATCAGT 100 32
SH05_RS09250 NONE
SH05_RS09245 1878074 .. 1878089 - -11.8  -5.85244   AAGTAAAATAAAAAA              GCCGGG GCGA CCCGGC               AAAAAAAATCACTGC 100 44
        bssS 1877526 .. 1877542 -  -9.4  -3.74347   CCCAGAAATGGTAAA              GGCACC GGTGA GGTGCC              TTTTGGGTGGATGGT  81 50
        solA 1876305 .. 1876324 - -10.7  -4.57837   ATACTCCTGTAAAAA            CGGCCTC ATTCTG GAGGCCG             TAATGATGATTATTG 100 35
SH05_RS09230 NONE
SH05_RS09225 NONE
SH05_RS09220 1874732 .. 1874756 - -14.4   -2.9735   ACAGAATAAATATCA          TTGCCGGATG CGTGC CATCCGGCAA          CATTTCACGCTTACT 100 36
SH05_RS09210 1872421 .. 1872444 -  -7.4  -2.83233   TAAGCACACTAATTA          TGCGCCCGACT TCC AGG-GGGCGCA          ATCCAGAGAGCTTTT  59 109
SH05_RS09205 NONE
SH05_RS09200 NONE
SH05_RS09195 1870403 .. 1870421 - -10.3  -5.11063   ACGAGCCAATAAAAA             TACCGGC GTTAT GCCGGTA             TTTTTTTACGAAAGA 100 277
SH05_RS09175 1865985 .. 1865996 -    -3  -4.55295   CGGTTGATAAATAAA                TTTG CTGG CAAA                 CCCTACACGAAGTCG  63 28
SH05_RS09170 NONE
        opgC 1864568 .. 1864598 - -11.8  -5.03715   ATTATTCTCAAAAAA       GAACCCGCCACCAG TTT CTGGAAGCGGGTTA       TGGTCAGACTGGCGT 100 77
SH05_RS09130 1860520 .. 1860535 -  -4.6  -3.09273   TGTGCGCAAGACATA              TCGCAG CAAT CAGCGA               CGGGCAAGAAGAATG  51 19
SH05_RS09125 NONE
SH05_RS09120 1858975 .. 1858993 -  -3.8  -2.87243   GCATGAGTAGAACTA             CTGCATGT TTG ACACGCAT             TGCAGCCTCCGAACA  45 50
SH05_RS09115 NONE
SH05_RS09110 1857644 .. 1857670 -  -9.5  -5.01811   GCAGGAAATCAAAAA         TAAAGCGTGAG GGGCA CTCACGCTTTC         GCTTAAACAGTAAAA 100 72
SH05_RS09085 1854398 .. 1854417 -   -10  -5.92337   ATATACGAAAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTTCTTTAAATATG 100 39
SH05_RS09065 NONE
SH05_RS09060 1850841 .. 1850851 -  -3.2  -3.29511   TCGACTGGCTGATAA                 CGCA CTT TACG                 AGGCGAAAGAGACCG  47 134
        pgaA NONE
        pgaB 1844466 .. 1844491 -  -5.5   -2.9621   ACCAGAGTGAAAGTA         CGCTACGCATA GGGG TATGCATAACA          CCAGACATAATATAA  52 58
SH05_RS09040 NONE
        pgaD 1842693 .. 1842726 - -14.7  -2.84325   GTTCGGTAAAGAGGA     CTGCGTACGTTCGGCA CTT TGCC-AACGTACGCTG     CATGCCTACAGTTAA 100 90
SH05_RS09025 1840765 .. 1840775 -  -4.6  -3.34398   GCTGGGTTTCAAAGA                 CGGC ACT GCCA                 ATCCCGATAGCCAGA  53 500
SH05_RS09005 1837494 .. 1837508 -  -8.6  -3.72893   CACGGTTGCAGGAAA               GCTAAG GGA CTTAGC               CTGCGGCGGTTTTGT  73 201
        putA 1831570 .. 1831597 - -15.6  -2.63089   GACCACGTTAAAGAT        GCCGGAGGAGGT TGTA ACATCCTCCGGC         TACCTGTTTAACCTA 100 33
SH05_RS08980 NONE
SH05_RS08975 NONE
SH05_RS08970 NONE
SH05_RS08965 NONE
SH05_RS08960 1827056 .. 1827069 -  -2.3  -3.28712   GTTTGCTCCTTACAA               CAGCC CGCA GGCTT                CTTCAAAGGACAGAC  45 6
SH05_RS08955 NONE
SH05_RS08950 1824698 .. 1824713 -  -7.6  -4.19817   CCCACGTAGCGAAAA              TATGGC AGCC GCCATA               CGCCGCGTTAATTCT  76 508
SH05_RS08935 1823800 .. 1823817 -  -4.1  -2.73875   TCCTGTTGAAGATTA             GCCGTTA AGTT TAACTGC              CAGACCTGCGACATA  46 5
SH05_RS08930 1823519 .. 1823541 - -16.3  -4.84673   TGAAATAACAGAAAA           CTCCCCCGC GAGAA GCGGGGGAG           TCGCTGGTTAAACGT 100 33
SH05_RS08915 NONE
SH05_RS08910 1819105 .. 1819119 -  -7.1  -4.07568   TTGTGCGCCTGAAAA               GACGC GTTTA GCGTC               GCATCAGGCATTATG  72 141
SH05_RS08890 1813577 .. 1813607 -  -8.2   -3.7456   ATAACGATATTGAAA       TCCAGCGTAACCTG TTG CAGGAGATGCTGGA       ACGCCATCCAGAAAT  72 365
SH05_RS08880 NONE
SH05_RS08875 1808779 .. 1808789 -  -2.4   -4.8236   GAGTTAAAAAAACAA                 GCCG AAA CGGA                 AATCGCCGACTTTAT  68 210
SH05_RS08855 1807569 .. 1807580 -    -3  -3.04398   TTCTTTGTGGAAAAG                TAAC TGAT GTTA                 TAATGTATGATGTTG  44 93
SH05_RS08845 NONE
SH05_RS08840 1806063 .. 1806086 -  -9.6   -2.7806   TGCAAATCTCTAAAG          CCCGGT-ACGA ATA TCGCAACCGGG          TATCATTTAACTTTA  70 63
SH05_RS08835 NONE
SH05_RS08830 1804612 .. 1804631 -    -3  -4.14739   CCAGGCAGCTTAAAA            GAT-AAGAA TTC TTCTTCATC            AGTCAGGAACACGTT  58 24
SH05_RS08825 NONE
SH05_RS08820 NONE
SH05_RS08815 NONE
SH05_RS08810 1798612 .. 1798635 -   -14  -5.31456   GTAATGCATAAAAAA          GAGCATTCAG TTAC CTGAATGCTC           TGAGGCTGATGACAA 100 105
SH05_RS08755 1788277 .. 1788299 - -13.5  -5.48213   CAGGCAAAAGAAAAA           GGGGTTAGC ATTTA GCTAACCCC           TTATCTTATTTGGCG 100 36
SH05_RS08750 1787398 .. 1787424 - -10.1  -5.46657   CAGTGTAACAAAAAA         CAAAGCCCCGC ATAAA GCGAGGCTATG         AAAGTGTTAGCGGGT 100 45
SH05_RS08745 NONE
SH05_RS08735 1785425 .. 1785449 -  -2.2  -2.71924   CACCTCCCGGGAAAT          CTTTACCTTT GATAT AAGGGTAAAA          TTCCACATTTCAAGT  40 40
SH05_RS08730 1785049 .. 1785076 - -17.8  -5.63517   TGGCCAAATAAAAAA        TCCCCGGAAGGC AAAA ACCTTCCGGGGA         TTTGTTCAGGGATTA 100 38
SH05_RS08720 NONE
SH05_RS08715 1783773 .. 1783786 -  -8.1   -4.7889   ATAAAGACCGAAAAA               GCCTG CGCA CAGGC                ACAAAAATCTCAGGA  91 35
        mgsA 1783215 .. 1783234 - -13.6  -4.24711   GAAAACCGTAAGAAA            CAGGTGGC GTTT GCCACCTG             TGCAATATTACTTCA 100 33
SH05_RS08700 NONE
SH05_RS08695 1778426 .. 1778438 -  -7.7  -3.57144   TCTCTTACGCCGAAA                CAGGA GTT TCCTG                CGGAACTTGAGTAAT  68 2
SH05_RS08685 1776880 .. 1776900 -  -4.7  -3.64703   CCCTGGCGATGTAAA            GTCTACAAC GTA GTTGAAAAC            TTACAAGTGTGAACT  57 220
SH05_RS08675 1775651 .. 1775687 - -13.2    -3.794   GTTCAATTTACTAAA   GGCAAAAAAAACCCCGC AGCA GCGGGGTTTTTCT-ACC    AGACGAGAACTTAAG 100 36
SH05_RS08665 1773219 .. 1773233 -  -5.7  -2.77895   TGTACGCTGAACAAG               TCCGA TCAGT TCGGA               ATAAACCAGTTCAGC  53 16
SH05_RS08660 1772585 .. 1772609 - -18.7  -4.56597   CTGTCTCTTTAAAAA          GAAACCTCCGC ATT GCGGAGGTTTC          GCCTTTTGATACTCT 100 53
SH05_RS08625 1763038 .. 1763059 -  -2.3  -4.09739   TGAATCTGGCGAAAA           TGCC-GCA CTATGCC TGCTGGCA           CAACCCTGCGTTGTT  56 142
SH05_RS08575 NONE
SH05_RS08570 NONE
SH05_RS08565 NONE
        ssuC NONE
        ssuB 1749927 .. 1749956 - -20.1  -4.06419   TGGCTTGATAAATAA       CCGAATGGCGGCA ATAG CGCCGCCATTCGG        GGAATTTACCCCTGT 100 31
SH05_RS08545 1745813 .. 1745830 -  -9.1  -5.58209   TTAAAGGTAAAAAAA             GGGAGCC GATT AGCTCCC              TGATGATATTAACTG 100 34
SH05_RS08540 1744236 .. 1744255 - -13.6   -5.9362   GAAAAGATAAAAAAA            GAGCCAGC GGGC GCTGGCTC             TTGAAGACGCTAAAT 100 40
SH05_RS08535 1742532 .. 1742547 -    -9  -5.97575   AAGGTATAAAAAAAA              CAGGAC CAAA GTCCTG               TTTTTTCGGCATTTA 100 57
SH05_RS08525 1740996 .. 1741014 -  -4.4  -5.38951   AAGGCACATAAAAAA             GCCCGCTT TTA ATGCTGGC             CTGGATTTCTGGCAA  81 215
SH05_RS08485 1729058 .. 1729073 -    -4  -3.58343   CGCAGCATGTTGAAA              GATTCGC GCA GCGA-TC              AGTTACTGGCGATGG  53 259
SH05_RS08410 1711483 .. 1711505 - -11.3  -2.86654   CAAATATATGTAAAG           CGGGGCATT AAAAA AACGCCCCG           TAATATAACTCAGAC  81 77
SH05_RS08405 1710244 .. 1710261 -    -2   -3.1247   AGCTCGGACATGTAA             CACCTA CCTTCT TAAGTG              GATTTTTTATTTACT  43 58
SH05_RS08400 1707895 .. 1707914 - -11.4  -5.00616   TCTCGCGCTAAAAAA            GGCCCCAC TTTC GTGGAGCC             TTTATTGTACGCTTT 100 68
        pflA 1706989 .. 1707012 - -13.2   -5.4505   GCGCGGAATAAAAAA          GCGGCAACTC AATA AAGTTGCCGC           TTTACGGGGAAATTA 100 38
SH05_RS08385 1705028 .. 1705039 -  -2.2  -2.93715   ACAATCTCTATAAAT                GGCT GTTG AACC                 TTAATTCGGTAGTGA  41 331
SH05_RS08370 1701591 .. 1701608 -  -9.8  -3.89572   AGCTAATCATAACAA             CCGGGG TTTCGG CCCCGG              TTCTCTTTTATTTCT  84 33
SH05_RS08325 1687714 .. 1687740 -  -9.5  -5.04249   CGGGGAAAAAATAAA        GGCGAC-CCATA GTCG CATGGTGTCGCC         TTCTTTACTTTTGTT 100 55
SH05_RS08320 NONE
SH05_RS08315 NONE
         aat 1683254 .. 1683264 -  -8.2  -3.40622   TACTCCGAAAACACA                 CGGC TAA GCCG                 CACCAAAAGCGCAAC  71 174
SH05_RS08305 1682851 .. 1682867 - -10.1  -5.56263   ATCACAAAATAAAAA              GGCCGGT TAA ACCGACC              TTTTACTCGTTCTTT 100 68
SH05_RS08300 1682536 .. 1682555 -   -10  -5.82388   AAATGCGAAAAAAAA            GCTCGCAC TTTC GTACGAGC             TCTTCTTTAAATATG 100 39
SH05_RS08285 1678994 .. 1679014 - -12.6  -4.96848   TTTTTGAGATAAAAA            TGCCAGCC GATCG GGCTGGCA            TTTTGCCTTTAGGAT 100 62
SH05_RS08270 1674525 .. 1674542 -  -6.9  -3.61715   CAGCCTGTTGAATAA             CGATCGG GAAG CCGAACG              AGAACATTTAACGGC  63 296
SH05_RS08260 1672837 .. 1672851 -  -3.5  -3.81926   TATTTTAAAAACGAA               GGCGA GTCAT TCACC               AGATAAATAAATCCA  56 119
SH05_RS08255 1672005 .. 1672025 - -11.1  -5.46629   AACATCTTAAAAAAA            GGCCTGACA TTA CGCCAGGCC            TTCTGCGTTAATTAA 100 37
SH05_RS08250 NONE
SH05_RS08245 NONE
SH05_RS08240 1667832 .. 1667857 - -11.9  -3.38581   ACTAACGGTTAAATA         GCCCGATGAAA GGAA TATCATCGGGC          ATAAGGCGATTATGC  89 35
SH05_RS08235 1665979 .. 1666009 -  -2.6  -2.89569   TGCGTAAATCAATCA       TGGCATGTCC TTATTATGACG GGAAATGCCA       CCCTTTTTACCTTAG  42 32
SH05_RS08230 NONE
SH05_RS08225 1663468 .. 1663525 -    -3  -2.50387   GTTGAGAAAATAACG TGCG-CATTCTTCCGTGATTTCCCCCATG ATG CA-ATGGGAAA-CATGAAAGAATAACGCA GGTTTTGTCGATTAA  42 37
SH05_RS08220 1662382 .. 1662399 -  -3.3  -3.92641   AAGCGGATGCAGAAA             CTCAGGC GATT GCCGAAG              CATTGCTGGAGAAAT  55 51
SH05_RS08205 1660578 .. 1660606 -    -9  -3.96148   GTCGGCGAGCATAAA       TGT-CGGCATTCC TCAC GAAATGCCGGACA        ATTTACGGGGTTTAT  80 56
SH05_RS08200 NONE
SH05_RS08195 NONE
SH05_RS08190 NONE
        artM 1657382 .. 1657408 - -12.4  -5.74086   AAATGAAATAAAAAA         GACGGACAAC TTAGTGG GTTGTCCGTC         TTCATTATAAGAATT 100 168
SH05_RS08180 1656335 .. 1656348 -  -9.5   -5.5604   TGAAGCAATAAAAAA               GCCGC ATGT GCGGC                TTCAGATTGCTGACA 100 206
SH05_RS08120 1647145 .. 1647177 -  -6.9  -5.40625   ACAGCACAGAAAAAA      TCAGTAAAGCCCTCA ACG CGAGGGCTTGTCAGA      CGATCAGGCGTCCAG  89 29
SH05_RS08110 1644670 .. 1644706 -  -3.7  -5.60689   TTAGATAACAAAAAA    CCCATCAACCTTG AACCGAAATGG CGGGGTTGATGGG    CTCCACAAAATGGGG  89 138
SH05_RS08100 NONE
SH05_RS08095 1641912 .. 1641929 -  -3.5  -3.31799   GACAATTTTTCATAA             TCATTTC GCCT GAAATAA              TGCAGCGGGTTAATT  49 97
SH05_RS08090 1641596 .. 1641622 -  -8.7  -5.47399   CGAAGGGTAAAAAAA         TGCCTGACTGC TTTGT GCGATCAGGCA         TTCTCGAATTAATGG 100 34
SH05_RS08080 1639434 .. 1639458 -    -3  -3.02461   TAATCCCTCTGAATA         GTTATTGAAGCG AGC CGCT-CAATA-C         TACACTTTTTAGCAG  44 44
SH05_RS08075 1638626 .. 1638650 - -12.1  -3.30159   TTAATCTTCTGATAA          CCGGATGGCGC GAA ACGTCATCCGG          TTATACGTCATTAAT  89 36
SH05_RS08065 1636173 .. 1636188 -  -2.4  -4.92239   GCAAAAAGGCAAAAA              CTACGG CTGG CCGCTG               GCAACCTGGGGAATC  71 376
        rimO 1633352 .. 1633394 - -11.5  -2.78018   AGCTGGCAGTAATCA TTATTCGCAGGCCGGACAAA TGAT TTTGCCCGGCCTG-AATTAA TTAAACCCGGCTACC  81 26
SH05_RS08010 NONE
SH05_RS08005 1620833 .. 1620851 -  -3.7  -4.11692   CAGCGAGTTTCAAAA             CCCCGCG TCAGG CGCTGGA             CTGCTTACTGGCAGG  60 240
SH05_RS07995 NONE
SH05_RS07990 1616825 .. 1616855 -   -11  -2.74012   TGATGATGTGAATGA       TTTAGCCCGGCGAC GAC GCCGCCGGGCCGAG       GAGATTACAGCATAT  77 30
SH05_RS07985 1615872 .. 1615890 - -11.7  -4.43173   AAAAAGAAGGGAAAA             CCGGAGC GCACG GCTCCGG             TAGAGAGGTCAGCTG 100 34
SH05_RS07980 1614302 .. 1614326 -  -8.5  -3.79633   GACAAATGCAAAATA          GCCTGATGCGC TAC GCTTATCAGGC          CTACGCAGTACCTGC  75 181
SH05_RS07970 1611470 .. 1611488 -  -8.8  -5.63517   CTGGCAAATAAAAAA             GGCGGATT ATG AGTCCGCC             TTTTGCTTTAAGTTT 100 47
SH05_RS07955 1609536 .. 1609555 - -10.7  -3.12402   GAAAGCAGGAGTGAA            GCGGCGT ACCGCG ACGCCGC             TATTTATCGGAAGGT  79 25
SH05_RS07950 1607673 .. 1607690 -  -8.4  -5.36441   TGGTGATATAAAAAA             TCCGCC TCTCGG GGCGGA              TTTTTGTTTTTAAGG 100 35
SH05_RS07940 1605858 .. 1605887 - -16.7  -3.96827   AAAAGTAGCGAGAAA       TTCTGCATGGTTA TGCA TAACCATGCAGAA        ATGTAAATTTAATTA 100 34
SH05_RS07935 1605032 .. 1605052 - -13.3  -5.07652   GGCTGCAAAACAAAA            CGGCCTCCT GTC AGGAAGCCG            CTTTTATCGGGTACT 100 67
SH05_RS07930 NONE
        glnH NONE
        glnP 1603151 .. 1603162 -  -4.4  -2.95448   TTAAATTCAATCACA                GGAT TTTC ATCC                 TTCTTTCCAGACGAC  47 9
        glnQ 1602287 .. 1602306 -  -6.4  -3.30006   AGGAAGGGATATTAA            GCAGGTTG CTGA CAACGTGC             GGGCTTTTTTGCCGG  59 146
SH05_RS07910 1599905 .. 1599922 -  -5.5  -3.15544   CTGGACCTTTATGAA             CGACGAGC AGC GC-CGCCG             TTTTGTCAATCGCCA  53 44
SH05_RS07900 1598446 .. 1598467 -  -7.3  -4.48903   CAAAACAGACGAAAA           CTGCATCCA GAGG CGAATGCAG            TTACGTTGGTGGGGT  78 40
SH05_RS07895 1595910 .. 1595927 - -12.7  -4.58283   CAATTTCTCCAAAAA             GTGGGGC CTGC GCCCCAC              ATCTGAATCAGAAAT 100 33
SH05_RS07890 1595216 .. 1595227 -  -2.2  -2.73364   CGGGCAGTTCAAGCA                TCAG ATCT CCGA                 CCATTCCCGCAGCAG  40 14
SH05_RS07885 NONE
SH05_RS07880 1594129 .. 1594150 - -13.7  -5.81412   GCCAGCTAAAAAAAA           GCCCGTCCA GTGG CGGACGGGC            AAACAAGGGTAACAT 100 226
SH05_RS07860 1588839 .. 1588876 -  -6.9  -4.86033   AAACCTGCAGAAAAA   CCGTCTCGCCGCCTCGGC GAT GCCAAACCGGC-AGGCGA   ACAACAACGTCGCCG  85 303
SH05_RS07850 NONE
SH05_RS07845 NONE
SH05_RS07840 NONE
SH05_RS07835 NONE
SH05_RS07830 1581313 .. 1581325 -  -4.8  -3.54475   TTCTTCAGGAGAGAA                GCCA TGAAG TGGC                AACAACGTGTTCGTG  53 388
SH05_RS07820 NONE
SH05_RS07815 NONE
SH05_RS07810 1577969 .. 1577979 -    -4  -3.31144   GGCCCATTTGGATAA                 TAAG TTG CTTA                 ATGATTGTGTTATGG  49 274
SH05_RS07770 1573356 .. 1573376 -  -8.3  -2.64616   CCTGGAGTCAGATTA            TCCGCGCTA CAG TAGCGCAAA            TTGCGGGGAAACAGC  63 225
SH05_RS07765 1572271 .. 1572295 -  -8.5  -3.79633   GACAAACGGAAAACA          GCCTGATGCGC TAC GCTTATCAGGC          CTACATTTTCTCCGC  75 155
SH05_RS07735 NONE
SH05_RS07730 1564086 .. 1564112 - -13.8  -2.53759   AATACCTTTAAGTGA         TACCAGATGGCA TTG CGCCATCTGGCA         GAGTGATTAACTAAA  93 32
SH05_RS07725 1562647 .. 1562658 -  -7.2  -3.30124   CCGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCAAATAG  64 51
SH05_RS07705 1556214 .. 1556228 -    -7   -4.7373   CTACTGCATGAAAAA               GGCCGC TAT GCGGTC               GGGCAGGGACCAATG  85 105
SH05_RS07695 1554291 .. 1554311 -  -9.7   -3.2964   AAAGTGTGTCGATAA            CCGCCTGAT TAA ATCAGGTGG            CTATAAATGAACTGG  76 13
SH05_RS07670 1550530 .. 1550561 -  -3.7  -4.30719   GTGTTTCATAACAAA      TTGTCAACACGCT TAGCAC AGCGTGGCGATAA       TCACGCTGTCGGCAT  63 6
SH05_RS07665 NONE
SH05_RS07660 NONE
SH05_RS07655 NONE
SH05_RS07650 NONE
        galM 1544460 .. 1544476 - -10.1  -4.14193   ACAATATGAGATAAA              GCCCTCA TGA CGAGGGC              GTAACATTACTCAGC  88 32
        gpmA 1543484 .. 1543504 -  -8.3   -5.5112   GTTAGCAACAAAAAA            GCCGACT CACTTGC AGTCGGC            TTTCTCATTTTAAAC 100 50
SH05_RS07630 NONE
SH05_RS07625 1541582 .. 1541601 -  -9.3  -4.78661   AGTGAAAAATTAAAA            GGGAGAG ACTCCG CTCTCCC             ATTATTGGCTATTTT 100 47
SH05_RS07620 1540532 .. 1540562 - -15.5  -3.15544   CCGGATGTGGATCAA       CAGCGCACGTGAA AGAGG CTCACGCGCGCTG       TCCCATTAATGGTGA 100 31
SH05_RS07500 1521457 .. 1521468 -  -2.2  -4.60924   GAAATGTTCGAAAAA                GATC CGCA GACC                 GAAGCGATCGTGATG  66 396
        gltA 1509817 .. 1509844 - -12.8  -4.99035   TTAGGCATATAAAAA        TCAACCCGCCAT ATGA ACGGCGGGTTAA         AATATTTACAACTTA 100 52
SH05_RS07440 1508887 .. 1508904 -  -9.8  -3.76781   AAATATTTTATGAAA             GGCGGC GATGAT GCCGCC              AAAATAATACTTATT  84 36
SH05_RS07435 NONE
SH05_RS07430 NONE
SH05_RS07425 1504571 .. 1504598 - -13.6  -3.35522   CAATTTTCTGAAAGA        GATGCCCTTT-CC GGC GGCAAAGGGCATC        ATGGTAAATCAGTTA 100 34
SH05_RS07420 NONE
SH05_RS07390 1497708 .. 1497749 - -10.2  -3.46936   AAATTGCAGGAAATA CGTAGGCCTGATAAGACGC GTCAA GCGTCGCATCAGGCAT-CG GTGCTGGCCTATTAA  80 37
        kdpF NONE
SH05_RS07330 NONE
SH05_RS07325 1481682 .. 1481695 -  -8.1  -2.65766   GTAAACCTCACACCA               GACCG CAAA CGGTC                AGCAGTAAATCAATG  60 4
SH05_RS07320 NONE
SH05_RS07315 NONE
SH05_RS07310 1477684 .. 1477703 -  -6.4   -5.0916   TGTTTAAGATAAAAA            GCCGTATT TATT ATTACGGC             TTTAATTAATAAAAG  87 64
SH05_RS07300 NONE
        potE 1473595 .. 1473614 -   -10  -4.46072   GCCAACAAACAGAAA            GGGCGATC ATTC AATCGCCC             TTTTTTACTTTGTTT 100 43
SH05_RS07290 1473353 .. 1473363 -    -4  -2.61322   ACATTTTTTAAATAT                 TAAG TTC CTTA                 TATTTGAATAAAAAA  45 69
SH05_RS07285 1472313 .. 1472325 -  -6.9  -2.53822   CTTACCTGATAATAC                CCGCC GCT GGCAG                TTGTCAGGCGGGAAC  52 333
SH05_RS07265 1468612 .. 1468633 -  -7.9  -2.94232   TTCGGGGGAAACAAT           CAGCCAGGC CTCT GCCCGGATG            GATAGCGCGCCATAA  62 116
SH05_RS07260 1468253 .. 1468266 -  -2.3  -2.90227   GCGGAATCAGCAAAC               GAGCA GGAC TGCAC                ACTGTGCTACATGAA  41 50
SH05_RS07255 1467588 .. 1467615 - -16.4  -3.19463   GGCATTATCTATTAA        TACGGCGTAGAC ATGA GTCTACGCCGCA         TCACATCAGGCATTG 100 31
SH05_RS07245 NONE
         fur 1466849 .. 1466866 - -11.3  -5.24129   CCCTTGCATAAAAAA             GCCAACC CGCA GGTTGGC              TTTTCTCGTTCAGGC 100 45
        nagB 1459463 .. 1459486 -  -8.9  -3.08726   GATTTTAAAAAATAT          TGCCCTGAGC AAGGA GC-CAGGGCA          GGGATAACAATTACA  69 36
        nagA NONE
SH05_RS07205 1457026 .. 1457039 -  -3.9  -3.37975   ATGGACTACCCAGAA               TATTG ACAA CAATA                AGCGCCACTATAAAA  49 46
SH05_RS07200 1455920 .. 1455934 -  -7.8  -5.40072   GCTTGTTTAAAAAAA               TGCCGC AAA GCAGCA               CTGTGCGCAAGCGAT 100 351
        asnB 1454159 .. 1454192 - -16.8  -2.79557   AAGCACCTCAATAAC     TGAAACAGCCCCGG ATTTCA CCGGGGCTGTTTCG      CATTTCTTACTTATA 100 32
SH05_RS07190 NONE
SH05_RS07185 NONE
SH05_RS07180 NONE
SH05_RS07175 1453412 .. 1453428 -    -3  -3.33815   ATGTGCTCTAACCAA             CTGAGCT ACGT AGC-CAG              ATTGTTTCTTCGATG  47 39
SH05_RS07170 NONE
SH05_RS07165 NONE
SH05_RS07160 1453090 .. 1453105 - -10.4   -5.1417   GCAGAAAAGCAAAAA              GCTCGC CGAA GCGAGC               TTTTTTAATGTGGCT 100 36
SH05_RS07150 1450187 .. 1450212 -  -9.7  -5.51046   TAAAGAGAGAAAAAA         CAAGGCCCACCG GAA CGGCAGGCC-TG         AGAATTACGGCTGAT 100 30
SH05_RS07145 NONE
SH05_RS07140 1448506 .. 1448529 -  -8.8  -4.43477   GTTAGTTAATCAAAA          CGCCGTCGTT AATC ACCAACGGCG           GGGACGTCTGCCAGT  93 56
SH05_RS07135 NONE
         lnt 1445740 .. 1445758 -  -6.1  -3.05463   ACCTTCCTTAGGTAA             CATTTAG TTTGG CTAAATG             TAAAGATATTGCTGT  56 296
SH05_RS07125 1444636 .. 1444647 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH05_RS07120 1443375 .. 1443402 - -16.4  -5.26316   CTACTCCAGAAAAAA        GAGGGTAGCAGC GTTA ACTGCTACCCTC         GAAGATTGTTACCCA 100 148
SH05_RS07115 NONE
SH05_RS07110 NONE
        artP NONE
        rihA 1440114 .. 1440151 -  -9.3  -3.77089   AAAAAGAGATAAACA   GATTAAGACCACC-CAGG TAA CGCGTGGTGATCTTAATC   AATGACGTGTGTTAA  81 37
SH05_RS07095 1438203 .. 1438222 -  -2.8  -3.21416   GAGCCGGAGGATGAA            GATGTCGA TGAG CCAACACC             TGAAAATCATGAAGA  45 212
SH05_RS07080 1435217 .. 1435227 -    -4  -3.58905   ACGCGTGATACAGAA                 CATA CCT TATG                 GCCATTATATCTAGT  53 336
SH05_RS07065 1432220 .. 1432243 -  -7.4  -2.72851   CAATAAAGAGAATAT          GGGCCGAATGA AAT TC-CCCGGCCC          TTGTTTTTATCTCTA  58 38
        leuS NONE
SH05_RS07050 1428283 .. 1428294 -  -2.2  -3.28712   TTGTTCCGGGTACAA                CCGA ATCA TCAG                 TTACCCAGCGTGGTG  45 22
        holA NONE
SH05_RS07040 1426613 .. 1426627 -  -2.8  -2.90075   CCCTCCGTAACGACA               GGTATC AGC GATACA               AGCCTTGTTGGTTAA  42 15
SH05_RS07035 1425822 .. 1425838 -  -6.5  -3.53343   AATCGGCTTTCGAAA              GTGGGCT ATC ATCCCAC              CCCGCGCCGCAGATT  61 169
SH05_RS07030 NONE
SH05_RS07025 1424926 .. 1424954 -  -8.2  -2.78679   GTTTTCTACTCAAAG        CTCCCTTATCAC TCACG GTGATAAGGATG        GTTGGTGGTGATGCT  64 5
SH05_RS07020 NONE
SH05_RS07015 NONE
SH05_RS07010 NONE
SH05_RS07005 1419361 .. 1419380 -   -15  -3.50456   GTAATTAAATAGCAA            CTCCCGCC AGAA GGCGGGAG             TTTTTTACTGATGCT 100 83
SH05_RS07000 NONE
SH05_RS06995 1418288 .. 1418309 -  -5.1  -3.24456   AGATATTATGAGTAA           TGACCCAGT GTAA ATTGGGCCA            TTGATGTATGGAATT  55 39
SH05_RS06985 1417021 .. 1417037 -  -2.1  -3.62864   GAAACGGACCTGAAA              GCAGCCA AAG CGGTCGC              GAAAATGTAAAATTG  49 99
SH05_RS06980 1415883 .. 1415900 - -11.3  -5.36441   GTTCGATACAAAAAA             CCCGCTT CAAA AAGCGGG              TTTTTTATCAGACAG 100 62
SH05_RS06965 1414211 .. 1414227 -  -9.4  -4.36729   AGCAAGAATTCAAAA              CCCGCT TAATC AGCGGG              TTTTTTTTGGTCTTT  88 39
        dcuC 1411238 .. 1411260 - -13.4   -4.0162   GGGTGACATGATAAA           GCCGGAGGAA ACT TGCCTCCGGC           ATTACTATTTACTTG 100 34
SH05_RS06935 NONE
SH05_RS06930 NONE
SH05_RS06925 NONE
SH05_RS06920 NONE
        citX NONE
        citG NONE
SH05_RS06905 1401744 .. 1401771 - -18.5  -5.42265   TTAAATCATAAAAAA        GCCCGCCAGGT GGGCTT ACCTGGCGGGC         GTGATGATTTATTCA 100 57
SH05_RS06900 1400711 .. 1400733 - -12.7  -5.11836   ATACCCAAAAGAAAA           CCCTCACCG TCAGG CGGCGAGGG           TTTAACTCACATGAT 100 175
SH05_RS06895 1400189 .. 1400208 - -12.2  -3.53811   CTGATTTTGCGTAAA            GAGGATGC GAGT GCATCCTC             TGGGCAAAGCGAGTT  91 60
SH05_RS06890 1399584 .. 1399609 -  -7.5  -3.75153   GGTTTTGAAGCGAAA         GGCAGCACCAC GGAA ACGGTGCTGAC          TAACCTGAAACTGGA  69 432
SH05_RS06880 1398078 .. 1398105 - -14.8   -4.7373   TTATGGCATTAAAAA        GCCCCGCCGGGA TGGC TCCGGGCAGGGC         GGGATACTTATTCTG 100 45
        dsbG 1394421 .. 1394431 -  -3.2  -4.08692   TAAGTTTTTCTAAAA                 TAGC ACA GCCA                 CTTAGGGCAGAGCGA  58 107
SH05_RS06860 1393263 .. 1393275 -  -5.5  -3.09202   ATAGACATCTGAAGA                CGCTC TCT GAACG                TTACAGGGTGATCAG  53 152
SH05_RS06855 NONE
SH05_RS06850 1391083 .. 1391099 -  -3.5  -3.01712   CCTTTTCGGTGAATA              CCCCGGC ACA GCTGGCG              CTTGCTGATATGCTA  46 359
SH05_RS06840 1388814 .. 1388825 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTCA CGCC                 GCATCCGGCACTCTT  64 275
SH05_RS06800 1380237 .. 1380259 -  -3.4  -3.12351   GCGTCCGACAGTTAA           TGCTTAAAAC AGC GCCTTAAGCC           TATCCAGCACTTGCA  46 6
SH05_RS06790 NONE
SH05_RS06785 NONE
SH05_RS06780 1376046 .. 1376058 -  -7.7  -2.98789   ATCCAGAAAACAGGA                TGCCA TGA TGGCA                GACCACTTAGTTTAA  62 37
SH05_RS06755 1366880 .. 1366909 - -14.3  -3.30124   TTGTAGGCCGGATAA       GGCGTTCACGCCG CATC CGGCATGAACGAC        GCGCACTTTGTCAAC 100 56
SH05_RS06750 1365887 .. 1365913 -  -3.6  -5.34365   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  80 257
SH05_RS06730 1362888 .. 1362899 -    -3  -3.29043   AAGGGTGTTTCATAA                CATT GTTA AATG                 TAAGTTAAAACACCA  47 77
SH05_RS06725 1362621 .. 1362635 -  -5.6  -2.71364   GTATGCCGCGAAGTA               CGGCGA TAA TCGACG               TTTAATCCGCCAGCG  52 27
SH05_RS06720 NONE
SH05_RS06715 1361430 .. 1361447 - -14.1  -3.50588   ATCTGAGAGGAAATA             GCCGGGC AGAT GCCCGGC              AAGAGAGAATTACAC 100 35
SH05_RS06710 1360066 .. 1360092 - -16.7  -3.63895   GTCAACCATCCGAAA         CCGCTCTCATC CATTC GATGAGAGCGG         TTTTTTTAATTACTG 100 35
SH05_RS06680 NONE
SH05_RS06675 NONE
        nfrB NONE
SH05_RS06665 NONE
SH05_RS06660 1343740 .. 1343766 - -13.8  -3.44487   GATGAGAGCGAAAGA         GGTAAGCCAGGT CGT ACCCGACTTACC         TGGAGGAGATTTAAT 100 36
SH05_RS06655 NONE
SH05_RS06650 1342641 .. 1342662 - -10.9  -2.78465   ACTGAGACACATAAG           GCCTCGCAA TGGC TTGCAAGGC            TTTACATGTTTTGAG  77 86
SH05_RS06645 1340978 .. 1341006 -  -3.2  -3.16564   CTCTTATTCTATCAA       TGTCGTAGCC-CA GAAA TGTGGCTATAACA        GTACTTCATATTTCA  45 385
SH05_RS06630 1338600 .. 1338616 -  -2.1  -5.80003   GGAAGAAACAAAAAA              CAGCCTG ATG CAGGTAG              CCAGTGAGCATATTG 100 247
SH05_RS06615 1336663 .. 1336717 - -11.6  -4.09511   AATACCCCCTGAAAA GAAAGGAAACGACAGGTGCTGAAA GCGAGCT TTTTGGCCTCTGTCGTTTCCTTTC TCTGTTTTTGTCCGT 100 225
SH05_RS06600 1335847 .. 1335858 -  -4.4  -4.13561   TTCGTGTAAAAAATA                TGCT TAAT AGCA                 CCATTTCTATGAGTT  62 327
SH05_RS06590 NONE
SH05_RS06585 1333679 .. 1333698 -  -9.2  -4.88129   AAAAATTATTAAAAA            TGGGGCGT TGAG ACGCCCCC             AAAAATAAAGGGTAA 100 371
SH05_RS06495 1325347 .. 1325362 -  -3.2  -3.12999   GCAGCGGAGACTGAA              GCGCCGC AAT GCAG-GC              TTGCCGTGTTGTGAG  46 68
SH05_RS06490 1324002 .. 1324032 - -11.8  -2.60079   TGACCGTATAATTCA       CGCGATTACACCGC ATT GCGGTATCAACGCG       CCCTTAGCTCAGTTG  73 115
SH05_RS06480 1323149 .. 1323163 -  -4.4  -3.54743   TATGATCAATTATAA               TTAATA TTA TATTAA               TTCGTATAATTTGGC  52 17
SH05_RS06450 NONE
SH05_RS06445 1315938 .. 1315959 - -15.9  -3.95836   AGTCTGAAAAGAGAA           CCGGCCTGT TGAT ACAGGCCGG            GAAAGGGATCAGGCA 100 34
SH05_RS06440 1314841 .. 1314851 -  -6.8  -3.70446   CTACAGCGAAGAGAA                 CCTG AAG CAGG                 CGCGTGCGGCGCTGG  63 513
SH05_RS06430 NONE
SH05_RS06425 1312419 .. 1312429 -  -2.4  -4.08394   ACATGCGTCTTAAAA                 CTCC TGT GGTG                 CACAACTCTCGGCTT  55 121
        purE NONE
SH05_RS06415 1310731 .. 1310763 - -10.6  -2.57881   CAATTGGTGCACAAT      GCCTGATGCGATGC TTGAC GCATCTTATCAGGC      CTACAATGGGTACCG  74 96
SH05_RS06390 NONE
SH05_RS06385 NONE
SH05_RS06380 1302506 .. 1302525 - -13.6  -5.63504   AATGTTACAAAAAAA            GCCACGGT ATAA ACCGTGGC             AAAATCCAACATAGC 100 50
SH05_RS06330 1290557 .. 1290582 -  -4.7  -2.94412   GTGAACCTCAAATCA         GCTTGCGCGCTA TTT TA-CGCGCCAAC         GCGCAAGGAAACTTG  50 45
SH05_RS06325 1289349 .. 1289372 -  -2.4  -3.28712   TCTTGTTTTGGATAA          GGATTCGACA CTCA TATCAAAACC           GGTAACTCTCAACCT  45 92
SH05_RS06320 1288750 .. 1288765 -  -6.2  -4.67048   CTATCTGAAAATAAA              TAATCC TTCC GGATTA               AAATAAATTCTTGCC  77 212
SH05_RS06285 NONE
SH05_RS06280 NONE
SH05_RS06275 1276667 .. 1276698 - -10.9   -4.4846   CAATTGAAGAAGAAA      TGATGCGATGCCG GATGCG CAGCATCGCATCC       GGCGTTGTGGTTCAT 100 59
SH05_RS06260 NONE
SH05_RS06255 1273325 .. 1273343 -  -3.8   -4.7497   GCGATGTAGCAAAAA             TTACCGGC CTG ACCAGCAA             AGCCATTCGCTTCTA  73 390
        copA 1268004 .. 1268057 - -10.1  -2.57931   CGTAGGCCGGATAAG GCGTTTACGCCGCATCCGGCATCCG AGCA CCATTGCCTGATGCGACGCTTACGC GTCTTATCAGGCCTA  71 150
SH05_RS06225 1266431 .. 1266442 -  -7.2  -2.98014   AACGAAGCAAGCATA                CGCC TGAT GGCG                 GTCCAAAAAAAAGAG  61 176
SH05_RS06220 1265881 .. 1265904 - -16.8  -3.67976   GGCAGTAATCCGAAA          GTGCCGGATG TTTG CATCCGGCAC           AATGCTTAATCGCGG 100 31
SH05_RS06210 1262750 .. 1262776 - -15.3  -3.09831   GCGACTGTAAAACGA         TGCAGCCAAAG TTTGC CTTTGGCTGCA         ATGAAATCAGTCTTT 100 32
SH05_RS06205 1260764 .. 1260775 -  -7.2  -3.50393   TCGTAGGCCAGATAA                GGCG TTCA CGCC                 GCATCTGGCATTTGG  66 119
SH05_RS06195 1258253 .. 1258286 -  -9.7  -3.66995   GGGAAAAAATATGAA     TATATTCCGGCGC TTAATGCC ACGCCGGAACATA      TCGAAATGATGGCTA  77 60
SH05_RS06150 NONE
SH05_RS06145 NONE
SH05_RS06140 1249215 .. 1249235 - -12.6  -3.18505   GGGTAAAAACGAAAG            GGGGCAAC ATTTA GTTGCCCC            GAGATTGCTAACAAA  93 33
SH05_RS06125 NONE
SH05_RS06120 1240526 .. 1240541 - -11.8  -5.28176   GTTATGCATAAAAAA              GGCCGC TTAC GCGGCC               TTAGTGATTACACGT 100 45
SH05_RS06115 NONE
SH05_RS06110 1239249 .. 1239260 -  -2.2  -4.07568   TCCGGTTGCTGAAAA                TGCG GCAA CACA                 GTAAGACGAAAAGTC  53 162
SH05_RS06105 NONE
SH05_RS06100 NONE
SH05_RS06095 1235907 .. 1235923 -  -5.9   -3.1916   CAAAAAATCCCAACA              TGGCTAA ACT TTAACCA              CAACTGACGTCGCAA  55 476
SH05_RS06085 1235152 .. 1235176 -  -7.1  -3.83026   TGCCGGTACAGCAAA         CCGCCGTGCC GGTTCA GGC-CAGCGG          TGGCGCAACGACTAC  66 138
SH05_RS06075 1233576 .. 1233602 -  -9.5  -5.07053   AAGCACTGCAAAAAA        CAGCCGGACGGT TTTC ACC-TCCGGCTA         TTTTTTTAATTGTGA 100 31
SH05_RS06040 1224880 .. 1224894 -  -8.6  -4.89477   GCTTGAACAATAAAA               GCGTTA TGG TAACGC               CTGCGATTAACCCGG 100 50
SH05_RS06035 1223652 .. 1223674 - -10.7  -3.12351   TTTTGCCAGACTGAA           GAGGTCATA CCAGT TATGACCTC           TGTACTTATAACAAC  79 510
SH05_RS05980 NONE
        ampG 1211156 .. 1211176 -  -4.9  -4.90525   CAATGTGAAATAAAA            CAATTATTT AAC AAATAATTA            TCATTAGAGTGACAA  74 226
SH05_RS05970 NONE
SH05_RS05965 NONE
SH05_RS05960 NONE
SH05_RS05955 NONE
SH05_RS05950 1206088 .. 1206101 -  -8.1   -5.4756   AATGCTAAGAAAAAA               GGTGC CGTA GCACC                TTTTTAATAGAGAGG 100 46
SH05_RS05945 1204344 .. 1204367 -  -3.8  -3.97911   ATCAAAGACAGCAAA          CTGAAAGTGC AGGC GCAAATTCAG           GGCGATGAAATCCGC  58 267
SH05_RS05935 NONE
SH05_RS05930 1201950 .. 1201962 -  -6.3  -3.42069   TGAAGCGGAAGAAGA                GAAGT TCG ACTTC                AGCATTCTCGATAAA  58 421
SH05_RS05920 NONE
SH05_RS05915 NONE
SH05_RS05910 1197527 .. 1197537 -  -2.4  -3.08133   CACTTACTTATGTAA                 GCTC CTG GGGC                 TTCACTCGTTTGCCG  43 110
SH05_RS05905 1195993 .. 1196018 -  -8.3  -3.18681   TCGGAAGTGGATTAA         GCCCGATCGTTC CTG GGACGAT-GGGC         TCGCTGGCAGCGATT  63 475
SH05_RS05870 1191342 .. 1191353 -  -5.8  -4.08767   GCCACTGTTTGAAAA                TCCC TTGC GGGA                 GTGAAAAAGGCGCAA  68 291
SH05_RS05865 1190406 .. 1190426 - -12.6  -4.14257   GTTAACAATCAGAAA            TGCCGGGA ATAAA TCCCGGCA            TTTTCATAATCAGAA 100 35
SH05_RS05825 1183395 .. 1183421 -  -2.8  -4.63218   CGCTGCGTAAGAAAA         GTCAGGCGCTAC GTC ATGGCGGCTGTC         AGGTGCTGTATGCGG  68 248
SH05_RS05795 NONE
SH05_RS05790 1171811 .. 1171832 -  -3.7  -3.48684   TCACAACCACCAGAA           CGGCTAC CAATCACC GTAGCCA            ATAAAGTGATAGCTT  51 107
SH05_RS05785 1170364 .. 1170406 -  -5.5  -5.30189   CACAAGAGTAAAAAA CGTAGGCAATTGGCGCATCA TGCC TGATGCGACGCTTGCCG-CG TCTTATCAGGCCTAC  84 223
SH05_RS05775 1168372 .. 1168386 -  -7.1  -3.30124   TCGTACGCCGGATAA               GACGC GGCAG GCGTC               GCATCCGGCATTAAA  64 54
SH05_RS05735 1164093 .. 1164133 -  -9.9  -4.65182   TACAAAGCAAAGAAA GCCGGACGT-A-ACCG-CAC CGAA GTGGCGGCCTGACGTCCGGC GAAAGTCATCAGGAT 100 34
SH05_RS05705 1159103 .. 1159127 - -10.8  -4.42851   TGAAGAAACTGAAAA          CGCCCAATAA GAATA TTATCGGGCG          TTAAAATATTACATT 100 34
SH05_RS05695 1158335 .. 1158353 - -10.2  -2.78263   ACAATGTAAAACTTA             CTGGCGGC GAT GTCGCCAG             TGCAGCCATAGCGCC  75 4
SH05_RS05675 1154395 .. 1154423 - -10.4  -4.40298   ATCGAAATGAATAAA       GGCAAACTGGTCG CTAT CAACC-GTTTGCC        TTCAGAGTATTAATC 100 39
SH05_RS05660 NONE
SH05_RS05655 1150652 .. 1150673 -  -7.3   -3.4285   TCAGGCAATTTATAA           CGTTGCTGA AACG TCAGCAATG            TATGATGTTGCTACA  61 398
SH05_RS05645 1149074 .. 1149084 -  -6.8  -2.85668   GAGGGGCATAGTATA                 CCTG AAG CAGG                 GTAGGGATGTTTTAC  57 145
SH05_RS05640 1147959 .. 1147975 -  -6.5  -2.73875   GGCGGGGTAATACGA              GAGTGGA CGG TCCCCTC              GCCCCCTTGGGGAGA  55 110
SH05_RS05615 1143260 .. 1143270 -    -4  -3.91488   AATTTGCTCAAAGAA                 TCAT TTT ATGA                 ATTACAAAGCCTTCA  59 121
SH05_RS05610 1141784 .. 1141796 -  -4.1  -3.44051   GTTCGAGCATTATAA                CGAAT GGC ATCCG                CATAGTGCGCTGGGT  52 275
SH05_RS05595 NONE
SH05_RS05590 1139214 .. 1139264 - -16.6  -3.06302   ATCATCTGCATGCAA TATACTATAGGGGGGTATTCTAT ATGTCA AT-GCATACCCCCCTATAGTATA TAACACTGGAGAATA 100 137
SH05_RS05585 NONE
SH05_RS05580 1137733 .. 1137753 -  -7.5  -2.85407   GAGAGTATTAAGAAC            CCCCGCC TGAAGTG GACGGGG            TAAACCTGCGGGAAA  59 41
SH05_RS05575 1136808 .. 1136819 -  -7.2  -3.30124   GTGTAGGCCGGATAA                GGCG TTCA CGCC                 GCATCCGGCAGTCGT  64 48
SH05_RS05530 NONE
        lacI 1125705 .. 1125718 -  -6.7  -2.70932   TGGGGTGCCTAATGA               GTGAG CTAA CTCAC                ATTAATTGCGTTGCG  56 42
SH05_RS05520 NONE
        lacY 1123647 .. 1123658 -  -7.2  -3.28791   ATGTTGGTCGGATAA                GGCG CTCG CGCC                 GCATCCGACATTGAT  64 44
        lacA NONE
SH05_RS05490 NONE
SH05_RS05455 1108574 .. 1108605 -  -9.4  -2.66451   ATCTATTGAAATTTA      TGCCGGATAAAGCG TTCG CGCTGCATTCGGCA       GTTCAGCTTTTCAGC  68 28
SH05_RS05445 1107269 .. 1107290 -  -7.2  -5.31059   AGACCAATGAAAAAA           GCCCACAC AGGGGA GAGTGGGC            TGAAATGGGAAGCTA  95 152
SH05_RS05390 NONE
SH05_RS05385 1094805 .. 1094818 -  -2.3  -3.78909   TAACGATAAAATCAA               GCTGG TTCT CGAGC                TAACGGAACGTAACC  51 459
SH05_RS05375 1093264 .. 1093289 -  -7.5   -4.4009   TGTTATTGCATAAAA         CCGCGCCATGT CTGC ATATGGCGCTG          TTTCTCCTACCTCTT  75 353
SH05_RS05365 NONE
SH05_RS05360 NONE
SH05_RS05355 1087136 .. 1087146 -  -5.4  -4.84914   ATCCAGAGAATAAAA                 TCTG TCG CAGA                 TAAGGTTGTATTAAT  75 207
SH05_RS05350 NONE
SH05_RS05345 NONE
SH05_RS05320 NONE
SH05_RS05315 NONE
SH05_RS05310 1079308 .. 1079331 -  -6.9  -4.56597   GTCTTGCTGTAAAAA          TACATGATT GATATT AATCATGTA           TTTTACCTAAGACGA  76 171
SH05_RS05305 1078189 .. 1078199 -  -3.2  -4.24123   GGAACAATTTGAAAA                 CAAG AAC CTCG                 CTTAGGCCTGTGTCC  58 27
SH05_RS05285 1074735 .. 1074749 -  -5.7  -3.29511   TGGATTTTTCGAGAA               TGGAG GTTAT CTCCA               CTTTACTGGCCGATA  57 168
SH05_RS05280 NONE
        rpmJ 1074041 .. 1074073 - -12.3  -4.26344   ATATCCCCAGGAAAA      TTAATGTTGGTGT TATAAAC ACACCAACATTAA      TCCGATCTGATTATT 100 77
SH05_RS05265 1072448 .. 1072460 -  -4.8  -2.53876   CCCGAGTTGAATTGA                GGAC GTGAT GTCC                CAGTGAGTCATTTTT  47 62
SH05_RS05260 1071800 .. 1071818 - -11.7  -4.24342   CCGTCCAGGAATAAA             GCAGGGG GGCTA CCCCTGC             TGGTACATCAGAGAG 100 42
SH05_RS05255 NONE
SH05_RS05250 NONE
SH05_RS05245 NONE
SH05_RS05240 1065968 .. 1066000 -  -4.8  -3.84619   AAATCGTAAAGAGAA      CAGCGGTACATCGT ATGTA AGAACGTACCGCGG      TTGGCTGGGGAACTT  59 271
SH05_RS05235 1065369 .. 1065399 - -12.8  -2.76189   TAATGCATTGAATGA       TAAAAATGGCGC AAATACA GCGCCATTTTTA       TAGGTTAAAAACATT  91 230
SH05_RS05225 NONE
SH05_RS05220 NONE
SH05_RS05215 NONE
SH05_RS05210 NONE
SH05_RS05205 1058956 .. 1058972 -  -9.5   -3.2045   AAAAATGCATTAACA              TCGCATT CGT AATGCGA              AGGTCGTAGGTTCGA  67 185
SH05_RS05195 NONE
SH05_RS05190 NONE
SH05_RS05185 1056658 .. 1056675 -  -7.1  -4.33854   ATCAATAAAATTAAA             TCTGTAA TTTA TTACAGA              CTTTCTCGTACAGAA  75 19
SH05_RS05180 NONE
SH05_RS05175 NONE
SH05_RS05170 1054040 .. 1054067 - -12.2  -4.40333   TTGAAACAATACAAA        TAA-GGCCTTCTC ACT GAGAAGGCCATTA        CCGACTTACAGTTCG 100 31
SH05_RS05160 NONE
SH05_RS05155 1050908 .. 1050920 -  -3.3  -2.83258   AACAGACTGAATAAT                CGGCA TAA TGCTG                GCATGTCCACGCTGG  43 157
SH05_RS05150 1049865 .. 1049887 -  -5.5  -3.41051   CCAGCTCGACCACAA          CGTGCCGTCG TGGC CG-CTGCACG           AGCAGCCCATTCCGG  54 293
SH05_RS05125 1042533 .. 1042549 -  -2.9  -2.59447   GGCGAATGAGAATAT              TTGCCTG CCG CCGACAA              TCAGGTGGTCGGGGA  41 56
SH05_RS05120 1042142 .. 1042155 -  -2.3  -2.76969   TAAGCCATTTTAAAT               GACTC GGAG GTGTC                TGTTAAACCCGTGGC  41 6
SH05_RS05115 NONE
SH05_RS05110 NONE
SH05_RS05105 NONE
SH05_RS05100 NONE
        fbpC 1039439 .. 1039472 -  -9.5  -3.30124   TTGTAGGCCTGATAA     GCGCAGCGCATCAGGC ATT GCCGGATG-GCGGCAC     AAGCGCCTTATCCGG  74 60
SH05_RS05080 1035351 .. 1035379 -  -3.9  -2.90462   AAAGCCAGAAAAGAT       CGGTGG-TACTG GAATAA CAGTATCCAACG        GGGCCGAAGTACGGC  46 498
SH05_RS05070 NONE
SH05_RS05065 1033640 .. 1033660 -  -4.6   -4.6856   CAAATACTGGAAAAA            CCGTCCTG AAAAG CCAGACGG            CAGACGGGCTGTATT  72 301
SH05_RS05045 1030740 .. 1030763 -  -7.4  -5.80727   AAAAATAATAAAAAA          CGGTAGAATC GTGA GATTCCGCCG           TTAATTGCGTATGTT 100 302
SH05_RS05040 1029795 .. 1029818 - -10.2  -2.91398   AACAAATAAAAGGGA          TCCCCGTCGC ATCG GCGACAGGGG           CAGGGAAGTAACAGG  76 55
SH05_RS05035 1028579 .. 1028594 -  -4.6  -4.25283   AGCCGCTCACGAAAA              TCACGC CGCA GCGTGC               GCACCGACACACCAA  66 366
SH05_RS05030 NONE
SH05_RS05025 NONE
SH05_RS05020 1027319 .. 1027344 - -12.5  -5.18371   CCTGATAAAAGAAAA         CCCCGGCAGCC TGCT AGCTGTCGGGG          TGAATTTGCTGGGGA 100 52
SH05_RS05015 1026981 .. 1027001 -  -9.7  -5.06414   CTCCGTCAATAAAAA            CGCCAGC GGCGATG GCTGGCG            TATGGGGATATAAAG 100 79
SH05_RS05010 NONE
SH05_RS05005 1026012 .. 1026027 -  -4.7   -3.6707   ATGTAATACCTCAAA              GCAGA CCGTGT TCTGC               GAACGAATAGATTTG  57 5
SH05_RS05000 NONE
SH05_RS04995 1024985 .. 1025017 - -12.1  -3.90048   TTGTCCGTAAAAAGA      TAACGCGCCTGCC GGGTAGT AGCAGGCGCATTA      CGCAATAGGTAAACA 100 87
SH05_RS04975 1020765 .. 1020789 - -10.7  -2.78679   CGGCGTGAGTGAAAT          GTGCCGGATGC ATC ACATCCGGCAA          TATTCATTAAAACTG  77 32
SH05_RS04955 1016742 .. 1016773 - -17.3  -3.86776   TAATGAAGGATGAAA      CTGCCGGAAGGCG ATTAAA CGCCATCCGGCAG       CAAATCAAATAATTA 100 38
SH05_RS04915 1010841 .. 1010852 -  -7.2  -3.37796   CGGTAGGACGGATAA                GGCG TTCA CGCC                 GCATCCGGCAGTTGT  64 58
SH05_RS04900 NONE
SH05_RS04895 1008364 .. 1008376 -  -3.3  -2.91429   TAAAACGGTTACACA                CGCCA GGA CGGCA                AAATGGATCCCAAAT  44 137
SH05_RS04890 1007560 .. 1007581 -  -8.7  -3.91084   TGACGGGCAATGAAA           CCTGGCAAA AGAT TATGCCAGG            CGAATGGCGCTTATT  74 36
        fadE 1003360 .. 1003377 - -12.7  -4.56367   TAGCGGATAAAGAAA             CGGAGCC TTTC GGCTCCG              TTATTCATTTACGCG 100 34
SH05_RS04865 1001671 .. 1001684 -  -3.8   -3.6869   CACAGCAATCCGAAA               CCAC TGGCAC GTGG                AGAATAAGCTGCACA  53 287
SH05_RS04855 1001251 .. 1001264 -  -2.4  -3.17194   ACTCTTTTAATTTAA               CATG TAAACG CATG                GTTAATCCTCATATC  43 34
SH05_RS04850 1000655 .. 1000685 - -10.6  -3.19657   ATCAATAATAAATTA      TATCTGCCGCCAG GAATTT CTGGCGGCA-ATA       ATACAAAATTCTTTG  77 124
SH05_RS04830  998017 ..  998044 -  -9.1  -2.55021   AAACAAGCCACGAAT        TCGCCAGGCGG TTGGAG CCACCCGGCAA         TGTCGTAAACCACAG  65 43
SH05_RS04820  996522 ..  996536 -  -4.2  -3.42996   GACGACCGATCATAA               CGGC GAACGGA GCCG               ATGACAAGAAAGTTT  52 43
        mltD  995085 ..  995105 -  -9.7  -5.72622   GGCATAAATAAAAAA            GGCACCG GGGGAAT CGGTGCC            TTTTTATTATCTGGT 100 44
SH05_RS04800  992429 ..  992458 -   -10  -5.47159   GCCGAAGATAAAAAA       GCGATCGCCGCA CTGGAT TGCAACGACCGC        CTGGTTAGCCCGGAA 100 61
        metN NONE
SH05_RS04750 NONE
        metQ  982582 ..  982605 - -14.6  -3.23975   AGCTTGTAAAAATGA          CAAGACGGGC AAGC GCCCGTCCTG           AATGATATTACAAAT 100 60
        rcsF NONE
SH05_RS04735  981332 ..  981350 -   -11  -3.42056   AGTTGGAAGGTAGAA             CAGGCTCA AGG CGAGCCTG             GGACAAAAAAAAGTG  83 89
SH05_RS04730  979554 ..  979574 - -13.3  -5.47821   ATCCATGTAAAAAAA            GGGCCCTGA AAT TCAGGACCC            TTTCTGGCATCAGCC 100 35
SH05_RS04725  978595 ..  978606 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCAATGGT  64 125
SH05_RS04705 NONE
SH05_RS04700  976163 ..  976195 -   -12  -3.76952   CTTAGTTAAGTGAAA      GCCGGATAAGACGC ATCAA ACGTCGCATCCGGC      GAAAGTCAATCAGGA 100 35
SH05_RS04595  951217 ..  951232 - -11.8  -5.15634   TATCGCATTAAAAAA              GCCGGC ATTC GCCGGC               TTCATCTTATTCGTC 100 32
SH05_RS04590 NONE
        dapD  947617 ..  947639 - -10.5  -5.40474   ATCCCTGCAAAAAAA           TCGGGCAGC GTCGT GCTGCCCGT           GTGCATACTTTTAGT 100 36
SH05_RS04580 NONE
SH05_RS04575  945908 ..  945931 -  -4.4  -3.35813   TGGCAGGCCAACGAA          CTGGCGCGACC GCT GG-CGCGGCTG          AAAACGATGGACAAT  51 330
SH05_RS04555 NONE
SH05_RS04550 NONE
SH05_RS04545  939329 ..  939343 -  -5.6  -4.68994   ATGACCATCGAAAAA               CAGGGC GTT GGCCTG               GTGGTTGATCCGATG  75 210
SH05_RS04530  936030 ..  936063 - -10.9  -2.60079   TTACGCGACAACGGA     TGCCCGATGCGACGC TGGC GCGTCTTATCGGGCC      TACAAACGGCCCCGA  76 91
SH05_RS04505 NONE
SH05_RS04500  928944 ..  928957 -  -2.4  -3.03124   TGTGACCGCCGAAGA               GATG GCGCTG CATC                AGCCGAAGTCGGTAA  42 190
SH05_RS04475 NONE
SH05_RS04470 NONE
        dksA  921293 ..  921311 - -11.7  -4.81306   TTGAACAAAAAATAA             GGCGGGA GCATT TCCCGCC             TGTGGTAAACGTGAT 100 54
SH05_RS04460 NONE
        pcnB  918912 ..  918945 -  -8.1  -3.08813   GCCTATGGCAATATA     CGCCACTGTCATGCGG TAC CCTCACGAC-GTGGTG     CGCGTTTGCGTGGAC  63 0
SH05_RS04450  918255 ..  918279 - -10.3  -4.21141   TTTGAACAAATTAAA          TTTACTTAATT CAA AATTAAGTAAA          AATAAGTTCACAAGT  91 190
SH05_RS04445  917421 ..  917456 -  -6.4  -4.44548   TAGAGTTAATTAAAA    CAGGGAATAATA TAAAATAGAAAT TATTATTCCCTG     TATATTCATTCAATC  74 59
        ecpD NONE
SH05_RS04435 NONE
SH05_RS04430 NONE
SH05_RS04425 NONE
SH05_RS04420 NONE
SH05_RS04415  910860 ..  910909 -    -8  -2.70932   TGGTGGGGGCAATGA TTTAT-CCGTAGCAGCACTGCCA GAAGG TGACAGTGCTGCTACGTTATCAG GGATAGGTTACCTGG  60 22
        panB NONE
        panC  909100 ..  909130 -   -12  -3.51232   CGTGGGGTAAATTAA       TAACTGGCGCCA TCAGCCG TAGCGCCAGTTA       AGTATTACGCCAGCT  91 30
SH05_RS04395  907467 ..  907498 -  -5.1  -2.62263   ATTCGCTGGAGACGA      TGTC-GCGGCTGGT GAGTA ACCAGCCGCAGGGA      TAACAATCAAGCAAC  49 32
SH05_RS04370  902941 ..  902954 -  -2.4  -3.02511   TCGACTCGGGGAATA               CACT GTCGAA AGTG                CGTGAGATCTTAAGC  42 270
SH05_RS04360  899845 ..  899864 - -13.6  -3.36515   CCGTATTCGGAAATA            TGCCCGGA TCTC TCCGGGCA             TTAAACTGATGACAA 100 187
SH05_RS04350  897714 ..  897735 - -10.9  -3.17362   ACATAATAGCTAACA           TTGACCGCG GATG CACGGTCAA            TATTTCTACAAAAAG  79 51
SH05_RS04345 NONE
SH05_RS04340  895947 ..  895974 - -17.8  -4.59982   GCAGAAGTAAATAAA        TCTGGCGGAGCC TGGG AGCTCCGCCAGA         GCCGTTAAACAGCTG 100 30
SH05_RS04325  890563 ..  890579 -  -6.5  -5.26875   CCGGCAATTAAAAAA              GCGGC TAACCAC GCCGC              TTTTTTTACGTCTGC  89 44
SH05_RS04300  881333 ..  881361 - -10.2  -2.84325   TTGGTGTAAAGATTA        TTGCCCTCACCC TGTAC GGGTGAGGGCGT        AGAGAGATTAATGCG  75 33
SH05_RS04285  878908 ..  878927 -  -7.1  -2.64794   GGGAAGGGGAGATTA            TCCGCCC GCGATG GAGCGGA             TAAATCTGTCAACTA  52 41
SH05_RS04275 NONE
SH05_RS04270 NONE
SH05_RS04265  875463 ..  875475 -  -3.3  -3.72893   GAGTCTGCGATGAAA                CGTCA CGT TGGCG                GCGTTGCGGAATATC  53 263
        coaE NONE
SH05_RS04250 NONE
SH05_RS04245 NONE
SH05_RS04240  872445 ..  872462 -  -4.1  -4.62069   TCGCTATTTGAAAAA             CTGGAAT ATGA ATTCCCG              GACAGGCATATAACA  70 318
SH05_RS04115  844771 ..  844788 - -14.1  -5.60993   TCGGGCATAAAAAAA             CCCGCGC AATG GCGCGGG              TTTTTTGTTTGACTG 100 50
SH05_RS04110  843152 ..  843164 -  -3.3  -2.62515   AATTCTTCGACATCA                CACGG TTT CCTTG                TTGTTTTCGTTGTGT  42 10
SH05_RS04105 NONE
SH05_RS04100 NONE
        leuD  840012 ..  840031 -   -15  -3.64599   GGACGATAGCGGAAA            GCCCGGTC ATTT GACCGGGC             AAGGGGATTAATTCA 100 33
SH05_RS04080  836698 ..  836722 -  -7.2  -3.64192   AAAAAGAGTGGCAAA          GGACTTGAGA AGGAG CCTCAAATCC          CTTCGCCGGCGTTAT  68 138
        tbpA NONE
        thiP NONE
        thiQ  833368 ..  833394 -  -6.5   -4.3898   ATCAGGCCTACAAAA         CGCACTACCCG TAGGT CGGATAAGGCG         TTCACGCCGCATCCG  72 51
SH05_RS04050  829546 ..  829556 -  -2.4  -2.87132   TCGTGTCCTTATAGA                 GTCG CAA CGGC                 CTGGGCAGCCTGTGC  41 8
SH05_RS04045  827981 ..  827994 -  -8.1  -3.50393   GTGTAGGCCAGATAA               GACGC GTCA GCGTC                GCATCAGGCGTTACA  68 57
        araD  826992 ..  827012 -  -8.3  -5.19261   AAATCCATCAAAAAA            CCAGGCT TGAGTAT AGCCTGG            TTTCGTTTGATTGGC 100 59
SH05_RS04035  824628 ..  824644 -  -2.1  -3.63744   TTTTTGCTCAAAATA              GCCCAAG TTG CCCGGTC              ATAAGTGTAGCAAAA  49 1
SH05_RS04030 NONE
SH05_RS04025  820810 ..  820825 - -10.4  -5.72622   GGCAGAAACAAAAAA              TCCCCG GACT CGGGGA               TTTATGTACAAGAGG 100 78
SH05_RS04010  815914 ..  815924 -  -8.2  -3.35813   TTCCATTTCAATTAA                 CCGC ACT GCGG                 ATTACGTGGTAAATC  69 47
SH05_RS04005 NONE
        pdxA NONE
        ksgA NONE
        apaG NONE
        apaH  811128 ..  811141 -  -2.3   -4.4572   AACACCTTAAATAAA               CCCGT GATT ATGGG                CCGCCATACCTGGGA  63 455
SH05_RS03940 NONE
SH05_RS03935  800401 ..  800414 -  -8.1  -3.30124   CCGTAGGCCTGATAA               GACGC ATCA GCGTC                GCATCAGGCAGCGCA  66 46
SH05_RS03930 NONE
        caiC NONE
SH05_RS03920 NONE
SH05_RS03915  795751 ..  795764 -  -5.9  -2.68775   CGATGAGCAAATTTA               CGCGC GCCT GCGCA                ATAACAGTCGGGAAA  50 233
SH05_RS03905  795283 ..  795302 -  -7.8   -3.3449   ATCGAATAACTAATA            CGGTTCTC TGAT GAGGACCG             TTTTTTTTTGCCCAT  66 0
SH05_RS03890 NONE
SH05_RS03885  790380 ..  790393 -  -3.9  -3.65224   ACTTGATCTCAATAA               TTTGT AACC ACAAA                ATATTTGTTATGGTG  53 60
        rpsT  781962 ..  781975 -  -9.5  -5.65177   ACAGGCATAAAAAAA               CCCGC TTGC GCGGG                CTTTTTCACAAAGCT 100 56
SH05_RS03835  780852 ..  780866 -  -2.8  -2.72799   GGGGGAGATAGATTA               GTTGTA CAT TACCAC               GATTTTGACTCGGCT  41 161
SH05_RS03820  777772 ..  777798 -  -3.6  -5.34365   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  80 169
SH05_RS03800 NONE
SH05_RS03795  771702 ..  771712 -    -4  -3.23975   ATTCCTCAAAAATCA                 TCAT CGA ATGA                 ATGGTGAAATAATTT  51 147
SH05_RS03790  771090 ..  771107 - -12.7   -5.8187   TAGCGAATAAAAAAA             TCCCCCC GAGC GGGGGGA              TCTCAAAACAATTAG 100 37
SH05_RS03775 NONE
SH05_RS03770  766730 ..  766749 -  -7.8  -4.13654   CCGCTAAATGACAAA            TGCCGGGT AACA ATCCGGCA             TTCAGCGCCTGATGC  76 150
SH05_RS03725  759080 ..  759109 - -13.7   -4.7339   AATAAAGTTGAAAAA       TAAAAACGGCGCT AAAA AGCGCCGTTTTTT        TTGACGGTGGTAAAG 100 45
SH05_RS03700  753895 ..  753907 -  -4.7  -3.80573   TGGATTATCAGGAAA                GCCTG TGG CTGGC                GTCTGGCTGGGTCGT  58 98
        yjjX  752255 ..  752279 - -15.7  -2.65298   TTTAGCGAGTACAAC          CGGGGGAGGCA TTT TGCTTCCCCCG          CTAACAATGGCGACA 100 518
SH05_RS03675  748189 ..  748210 -  -2.9  -5.03145   CAAGGTTTGAAAAAA           CCTGCACGGG TGA CCCGC-CACG           AAATTGAGGATGCTA  77 209
SH05_RS03650 NONE
        lplA  742619 ..  742640 - -10.1  -4.25401   CAAATCGAAGAGAAA           GTTGCCCGC ATGG GCGGGTAAC            TACCTTACAGCCCCC  93 25
SH05_RS03610 NONE
SH05_RS03605  733810 ..  733864 - -13.8  -2.57931   CGTAGGCCGGATAAG GCGTTCA-CGCCGCATCCGGCAGTTG GCGCA CAA-TGCCTGATGCGACGCTTAACGC GTCTTATCATGCCTA  95 380
        rsmC  726168 ..  726179 -  -7.2  -3.30124   TTGTAGGTCGGATAA                GGCG TTCA CGCC                 GCATCCGACACGGTA  64 54
SH05_RS03555 NONE
SH05_RS03550 NONE
SH05_RS03545  725288 ..  725302 -  -5.8  -3.53224   TATCTGGCTTGCAAA               TGATAA AAA TTATCA               TATGATATTGGTTAT  59 341
SH05_RS03535  724147 ..  724165 -  -5.9  -3.98282   GGTACATTAACCAAA             GCCGGAC GTTAA GCCCGAC             GGAGAGAGAAATATT  66 274
SH05_RS03520 NONE
SH05_RS03515  721111 ..  721146 - -13.4  -3.26947   TAACTTTTATAGTAA    CACACGGAGGAGAG GAGGCTGT CTCTCATCCGTGTG     CTTAAGCGAGGCAAT 100 42
SH05_RS03510 NONE
SH05_RS03505  719761 ..  719773 -  -3.3  -2.78384   TTGTGTCGCAGTATA                CCGCC AGA AACGG                GGATTAATACTCTTT  43 29
SH05_RS03500  719218 ..  719231 -  -5.2  -4.28254   GGGTAACAGCTAAAA               CGCG GCGTTT CGCG                GTTCAGGAAATGAAG  68 28
SH05_RS03495  716645 ..  716679 - -15.8  -3.33261   TTGTAAGCCGTAGAA     GGCGTGTAGGTCGCAC CCT ATGCGACCTACACATC     AGTCAGGAATTACCC 100 35
SH05_RS03485  714403 ..  714417 -  -5.6  -3.14468   TGTGAGCATAGGTAA               GCGGGA ATT TCCCGG               TATTTATCTTTTGAT  55 84
SH05_RS03480  712864 ..  712891 - -12.2   -4.2679   TAATCGCCATGAAAA        TGCCCGATAAGCA AAA TG-TTATCGGGCA        TAAGGAGATTAATCT 100 34
SH05_RS03470 NONE
SH05_RS03465  708641 ..  708658 - -14.1  -4.51812   TCTGATAAGAACAAA             GCCCCGC CGAA GCGGGGC              TAAACACGGTTAGTG 100 35
SH05_RS03460 NONE
SH05_RS03455  707410 ..  707438 - -14.5  -2.86124   TTGAGTGAAATATCA        GGCCGGATGCGGC TGC GCCTTATCCGGCC        CATAACCCCTTACTT 100 35
SH05_RS03440  704753 ..  704779 -  -7.4   -5.0538   CTTTATCGTAAAAAA        TG-CCCTCTTG GGTTAT CAAGAGGGTCA         TTATATTTCGCGGAA  89 65
SH05_RS03435  700686 ..  700708 -  -9.1  -2.89569   TCCGTAAATTAAGCA           GCGGCCCAA ATTCA TCGAGCCGC           AGAAGAAGAAATTGC  67 181
SH05_RS03430 NONE
SH05_RS03425  697651 ..  697669 - -11.7  -5.38549   GTGAAATAATAAAAA             GCGCACC GGAAA GGTGCGC             CAGAAAATAATGTTC 100 39
SH05_RS03420  697014 ..  697031 -  -2.8  -3.57185   CGTACTGAAACAATA             GATTTT TACTGC AAAATC              AGACTGGTAAATATT  48 108
SH05_RS03415 NONE
SH05_RS03410  694284 ..  694297 -  -2.4  -3.07816   TGGTCAGGTATTGAA               GATC CGCTTC GATC                AGGGGATGGGCTACT  42 255
SH05_RS03390  687754 ..  687764 -  -8.2  -3.00585   CATGAGAGGAAATCA                 GGCG CTT CGCC                 GCTATTTCGAATTTA  65 38
SH05_RS03380 NONE
SH05_RS03375 NONE
SH05_RS03370 NONE
SH05_RS03365 NONE
SH05_RS03360  681239 ..  681253 -  -3.6  -3.75153   TCCCTTTAAGGCAAA               TCAATA AGA TATCGA               GAAGTATACGTAGCG  56 55
SH05_RS03355 NONE
SH05_RS03350  679106 ..  679119 -  -2.4  -3.75629   GAGTGGTAAGGGAAA               CTTC CCTCAT GAAG                TGACCACTTGTAGCT  51 18
SH05_RS03340 NONE
SH05_RS03335 NONE
SH05_RS03330  675966 ..  675985 -  -2.9  -2.57132   CGGGCGGCTGACAAC            CGTTTAA GCCGTT TCAAACG             TTCCTTTCACGCAGG  41 9
SH05_RS03325  674609 ..  674627 -  -3.8  -4.10161   CAGGAGTGCGCAAAA             TGATGCGA CAA TCACTTCA             GGCTGTTTTACCTGA  60 391
SH05_RS03305 NONE
SH05_RS03300  672978 ..  673002 -  -8.6   -3.8512   GACTTATTATAATAA          GCGCAAGG GTAAACGTT CCTTGCGC          TTTCTTAAATTAAGA  75 128
SH05_RS03290  671691 ..  671718 -  -5.4  -4.11216   TCTGCACCTGCAAAA        CGGCGGCAGCTG GCGT CACCTGGCGCTG         GGCGTGGCTGGCTGG  65 305
SH05_RS03270  667411 ..  667424 -  -8.1  -3.50393   TTGTAGGCCAGATAA               GACGC GTCA GCGTC                GCATCTGGCATAAAC  68 169
SH05_RS03210  656918 ..  656930 -  -2.7  -4.56597   GGTGGTCTTCAAAAA                CTAAA GAT CTTAG                TTTAACTATTTGTTT  61 243
SH05_RS03200 NONE
SH05_RS03195  654479 ..  654498 - -12.1  -2.69246   GACAAATTGATAGCA            GGGCCCC TTTACC GGGGCCC             TGAAGCGTTAGTTTT  83 33
SH05_RS03190  653250 ..  653278 -  -3.8  -4.32482   AGCCATAATCGAAAA       GGCGCGGATGTCT ATTA AGGCATCCG-GCT        AATCTGTAAGCAATA  63 208
SH05_RS03175  650896 ..  650906 -    -4  -3.89346   TCCTGACGGGATAAA                 TTCA TAC TGAA                 GAACCTATTTAATCA  57 510
SH05_RS03170 NONE
SH05_RS03165 NONE
SH05_RS03160  649270 ..  649290 -  -6.8   -3.5511   TTCCAGCCAGAAATA            CCGGGAAC CTGTT GTTACCGG            GCGATGAGTGCGAAC  63 19
SH05_RS03155 NONE
SH05_RS03150 NONE
SH05_RS03145 NONE
SH05_RS03140 NONE
SH05_RS03135 NONE
SH05_RS03130 NONE
SH05_RS03125  642707 ..  642720 -  -2.4   -3.6878   ACATAGTGGAAAATA               TGCT TTGTTC AGCA                TGCTGAACCGTAATG  49 258
SH05_RS03120 NONE
SH05_RS03115  640941 ..  640954 -  -2.4  -3.09749   TATTGCGAACAGACA               TGAG TTTCTC CTCA                GACTGGTAAAATGCC  43 23
SH05_RS03110  638885 ..  638896 -  -5.8  -3.21276   CGTCCTCTCATAACA                GGGT AGCG ACCC                 ATCATTATCCGACTG  55 103
SH05_RS03105 NONE
SH05_RS03100 NONE
SH05_RS03095  636149 ..  636172 - -13.2  -2.67129   CTAATCAATAAAATC          CTGCCCCATA TCTA CATGGGGCAG           TTGTTCATTCTTTTA  91 38
SH05_RS03080  635147 ..  635168 -  -4.5  -3.44051   TGGTTATCATTACAA           TTGGAAATA AAAT TGTTTCCAA            TAGACATTTTTAACA  55 150
SH05_RS03075  634557 ..  634569 -  -4.1   -4.1673   GAATCGGTTAACAAA                GGATT CAT AACCC                ATACTCCAGACGGAA  61 17
SH05_RS03070 NONE
SH05_RS03065  631175 ..  631190 - -11.8  -4.19258   ACATTCCAGCTAAAA              GCCCGG CAAG CCGGGC               GTTAACACATCAGAA 100 35
        fecB NONE
        fecC NONE
        fecD NONE
SH05_RS03045  627456 ..  627474 -  -7.4  -4.10657   TCAGAGTCCGGAAAA             GTTCAGCC CCA GTCTGAAC             AGGCTTGCTGGCGCC  73 88
SH05_RS03030 NONE
SH05_RS03025  624005 ..  624023 -  -8.9  -3.05844   TTGGCCACCTGAACA             GAGGTGA TATGC TCACCTC             AGAACAACACAGGTG  62 315
SH05_RS03010  623002 ..  623030 -  -3.1  -3.90586   ATATGACCTCAGAAA        TGGATGGCGCTAT AGC ATATGGTCATCCA        GGAAAAAAAACACCA  55 468
SH05_RS02995  618745 ..  618762 -  -5.5  -2.96598   CAATTAAGGGACATA             GCCAGAT ACGC AACTGGC              TGATGCAAGCAGTCT  52 213
SH05_RS22960  616411 ..  616430 -  -7.2   -3.4072   TACTTTTCAGTACAA            GC-GACTGT ATT ACAGTCTGC            CATATATGATTACCT  66 119
SH05_RS02955  614791 ..  614810 -   -15  -2.89607   TTAAAACAGTAATCA            TCCCGGGC AAAT GCCCGGGA             ATTATTCTAGGATTA 100 288
SH05_RS02940  612001 ..  612014 -  -3.8  -3.57883   AGAATATGTGCGAAA               GAGG GCAGCG CCTC                AGATCAGCGCTGCGA  53 48
SH05_RS02930 NONE
SH05_RS02925  609402 ..  609419 - -12.7   -4.3898   ATTAGTGCCAGAAAA             GCAGCGC TTTC GCGCTGC              ACGTAGGGGGGCTGT 100 40
SH05_RS02920  607990 ..  608009 -  -4.2  -2.57931   GTGATTGCGCATAAC            TTCTCCCA ACGT CGGGGGAA             TCTTCAATCTTCCCC  45 69
SH05_RS02915  606915 ..  606942 -  -4.2  -2.80816   GGTTCACTCATGAGA        TATCCTCCAG TTTCCTGC CTGGAGTATA         GGCAACGTCCGGCAA  46 71
SH05_RS02910  605261 ..  605284 -   -14  -3.46482   AACCGAATGAACGAA          TAAAGGGAGC GAAA GCTCCCTTTA           TTATTGTTAGCAAAG 100 149
SH05_RS02895  601243 ..  601254 -  -7.2  -3.30124   GTGTAGGTCGGATAA                GGCG TTCA CGCC                 GCATCCGGCAATAAC  64 58
SH05_RS02890 NONE
SH05_RS02885  597785 ..  597804 -   -15  -5.47431   GTAAGAGATAAAAAA            GGCCGGAG CATG CTCCGGCC             TTCGTTTTCATCACT 100 50
SH05_RS02875  595486 ..  595504 -  -7.4  -2.74322   TTGAAGCGTTTAAAC             TCGGTTAC GAA GTGACCGA             TCCAGAAGAGCTGGA  57 402
SH05_RS02865  594106 ..  594138 -  -6.3  -2.50387   CTGCATAAAATAATG      TGATGCCGGGA TGGTTTGTATT TCCCGGCATCT      TTATAGCGATAGCAA  53 41
SH05_RS02845  590142 ..  590167 -  -8.3  -4.93877   CGTGAGTAAACAAAA         CCCAGACATCA TGGA TAATGGCTGGG          CTTAATTGAGCGTAG 100 45
SH05_RS02840 NONE
SH05_RS02830 NONE
SH05_RS02825 NONE
SH05_RS02820  587789 ..  587814 - -10.5  -4.61231   TTACAGCGGTAAAAA         GTCTGGCTC ATTATAGG GAGCCAGAC          TTTTATTACCAACCG 100 44
SH05_RS02815  587342 ..  587361 - -10.7  -3.14468   TGTCATCAGACTTAA            TCCGGGC ATGATA GCCCGGA             TTTCCATCAAGATTA  79 38
        treR  583093 ..  583106 -  -8.1  -4.92239   GGAAAAATTTAAAAA               CGGGA ACGT TCCCG                AAACGCAGCGAAGAT  95 65
SH05_RS02800 NONE
SH05_RS02795  579863 ..  579888 -  -9.8  -4.61868   TACTGACAGACAAAA         CCCCGG-AATG ACCGG CATTACCGGGG         CTTAGGGAAGATTTA 100 38
SH05_RS02790  577315 ..  577346 - -12.2  -2.65279   CAATTGCCAAATGTA      GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA       TTTGCTTAGCTCAGA  83 48
SH05_RS02785  576439 ..  576452 -  -5.2  -4.58685   AAAGTGGTCGAAAAA               GCCG ATAACG CGGC                GCAAGTCAAAGACGC  75 320
SH05_RS02770  574077 ..  574112 -  -8.3  -2.79796   CGGCATTTGAGCATA    GTGCCTGATGCGACGC TTGAT GCGTCTTATCAGGC-C    TACAGGTGCACCGTA  64 74
SH05_RS02760  571429 ..  571450 - -15.9   -5.1356   GCGCAGCAATAAAAA           CGCCTCTCC GTGT GGAGAGGCG            CAGGAGATTACGCGT 100 33
SH05_RS02735  565611 ..  565623 -  -7.7  -3.15579   GCAAGCGGCCATGAA                CAGCA AGG TGCTG                GTCGACCTGCGCTTG  61 371
SH05_RS02700  558214 ..  558227 -  -5.3  -4.13014   GCCAGAGGGTTAAAA               TTCAG ACAG CTGAA                AAATGCAAAACTGCC  65 183
SH05_RS02695  556680 ..  556704 - -14.3  -3.73647   GCTATGCAGTAATAA          GACGGCTCCTG ATT CAGGAGCCGTT          GATGTTTCTGGGGGT 100 40
SH05_RS02685  555493 ..  555523 -    -7  -3.16743   AACTCAGAGACTTAA       TTCCCCTATC CCATAGATAAC GATAGGGGAA       AATTATTTTTGCAGA  59 57
        cpdB  551397 ..  551410 -  -6.7  -3.30124   TTGTAGGGCGGATAA               GATGC GCCA GCATC                GCATCCGCCAATAAA  61 84
SH05_RS02660  549953 ..  549996 -  -2.4  -2.73334   AGGAAGCAGACATGA TTGCTCCCGGCATCCCGTC ATTATCA GAGAGGATGC-GGGAGGAT GCCACTTTAATTAAC  40 40
SH05_RS02655  548859 ..  548877 -  -4.6  -3.83318   TTCTTAATAAGATAA             GATGTATT TTA AATGCATC             TTTAAGGCAAAAGCT  59 86
SH05_RS02650  547695 ..  547705 -  -6.8  -3.14132   GGTCTGGCGCAGGAA                 GGTG TGG CACC                 GAAAGCGTTCGCTAA  57 488
SH05_RS02635  544528 ..  544541 -  -3.7  -2.71731   TGTATTCGTTAATCA               GCAGG TTAG CCAGC                CACAAAAAGCCATTG  44 410
SH05_RS02625  543430 ..  543448 -   -16  -4.72333   AACGAGACGTAAAAA             CGCCGACC ATT GGTCGGCG             TTTTGCTTTCTATTT 100 52
SH05_RS02595  541305 ..  541322 - -12.7  -5.75342   GTTTTTCAAAAAAAA             GCCCCCT GCGA AGGGGGC              AAAGCAAACTATGGC 100 66
SH05_RS02560  535358 ..  535399 - -10.9  -3.47762   AATAGCCAGGAAATA CTACGCCGGATAGCGCGAA CTTC TCCACGCTACCCGGTATAA  ACGACAGATTACAGG  83 34
SH05_RS02555  534301 ..  534333 -  -2.1  -3.45087   ATGAATTCAATAACA     TTGTCGC--GCCACT GGCAG AGTGGGAAGCGACAA     ACCACCTGGAACAAC  47 237
SH05_RS02545  533240 ..  533251 -  -2.2  -2.82327   TGTGCACAGGTAAAC                GCAT AGGG ACGC                 AAAGCAATGTAAAGC  41 62
SH05_RS02540  532818 ..  532829 -  -7.2  -3.30124   TTGTAGGCCGGACAA                GGCG CTCG CGCC                 GCATCCGGCATTGTT  64 60
SH05_RS02430  509294 ..  509307 -  -6.7  -4.28049   TCCAAAATTTGAAAA               GTGCT GCAA AGCAC                AGACCACCCAAGCGG  74 493
SH05_RS02405 NONE
         psd NONE
SH05_RS02395  502779 ..  502805 -    -3  -5.40072   TTGTGGCGAAAAAAA        CGCGGCTGG TTTATGTACG CCA-CCGCG         CTGGCTATTTTCGGC  85 114
SH05_RS02370 NONE
SH05_RS02365 NONE
SH05_RS02360 NONE
SH05_RS02355  495814 ..  495834 - -19.7  -4.52589   GGTTTCCATACAAAA            CGGCCCGCC ATA GGCGGGCCG            GATTTACATTGGCGA 100 45
SH05_RS02350  494630 ..  494647 - -11.3  -4.46581   GAAAAGCGGAGAAAA             GGTCCGA AAAT TCGGACC              CGATGGAATTTTACT 100 36
SH05_RS02345  493554 ..  493577 -   -11  -3.90559   AGCAATAAGCAATAA          CGGTACGACA GCTG TGTCGTGCCG           TTTGTTTTTTCTGCG  88 484
SH05_RS02320  491294 ..  491311 -  -5.7  -3.38314   TGCAACGGGCAAAGA             TTAAACT TCCC AGTTTAA              TGACAGGTTGCTGTA  57 190
SH05_RS02315  490106 ..  490150 -  -8.6  -3.31322   TTGAATGCTTGAGAA TTTGT-AGGCCGGATAAGGCG TTTA CGCCGCATCCGGCATGACCAA CGATCACGTTATCAG  69 87
SH05_RS02295  485672 ..  485694 -  -5.6  -3.62046   CCAGGGCTTTAAGAA           TTTCGTGCTG ATG CAGCAAAAAA           TGGCGGCGGGTGAAA  58 334
        aspA  483692 ..  483711 - -13.6  -5.55769   GCTCACAAGAAAAAA            GGCACGTC ATCT GACGTGCC             TTTTTTATTTGTACT 100 52
SH05_RS02280  482290 ..  482309 - -16.4  -4.55295   TCGGCGAGAAAGAAA            GCGGGGCG TGAA CGCCCCGC             GATTGATCATTACAG 100 35
SH05_RS02275 NONE
        dipZ NONE
SH05_RS02265  479593 ..  479604 -  -3.6  -2.53876   TGTCAGGTCAATGCA                CCAC CCTG GCGG                 CAGCGGGCGAAGCGC  44 1
SH05_RS02260  479366 ..  479385 - -13.6  -4.98531   TCCTGAAACGAAAAA            CGGACCTC CGTG GAGGTCCG             TTTATATGAATTTGG 100 38
SH05_RS02255  477146 ..  477172 -  -5.1  -5.10461   TTTATGTAATAAAAA         TTATGCGGCAA ATAAA TTGCCGCAACA         TATTATACCAACAGG  81 96
        cadB  475487 ..  475526 -  -2.7  -5.08824   TCTCCAGGTAAAAAA  GGCCCCTCCCAACACAT GGGACA AAATGAAAGGAGGAGCC   TCGGAAAATACTTTT  73 43
SH05_RS02245  473282 ..  473303 - -14.5   -5.1861   CTTATGAGCAAAAAA           GGGAAGTGG CAAG CCACTTCCC            TTGTACGAGCTAATT 100 39
SH05_RS02240  471708 ..  471719 -  -4.4  -4.25016   ATCACTAATAAATAA                CCAT CAAA ATGG                 TTTAAATGACTTATT  63 107
        lysS  470003 ..  470034 - -20.4  -2.71364   GGATTTGCGGAACGA      TGAACGAAGCAGTC GCCT GACTGCTTCGTTCA       TTAAAGTGAAATTTA 100 38
SH05_RS02210 NONE
SH05_RS02205  465950 ..  465960 -  -3.2  -3.90048   TTGTGGGTAAAAATA                 CACA TAA TGCG                 GGTGACATAATAGTT  53 227
SH05_RS02195  464212 ..  464243 -  -8.7  -4.13767   TTTGTTATTCGAAAA      TGGCGTGCCGC GTAGTCACGG GCGGCACGCAA       AGTGCATTTATAAGA  83 33
SH05_RS02190  462474 ..  462499 -  -3.9  -3.70689   TACAATCGCAAAAGA         GGTGGCCAGGGG GAT CACCTGG-CAGC         ATGCTGCCAGGCGCT  53 53
SH05_RS02185  461660 ..  461688 -  -6.1  -4.45151   AATAGCTAACGAAAA        TGGCCTGAT GCGATATGTTT ATCAGGCCA        CGTCTTAATGTAATG  74 113
SH05_RS02165  457450 ..  457461 -    -3  -4.58685   AAAGCGCGTGAAAAA                CAAA CATT TTTG                 AAATATTTAGTTTTA  65 131
SH05_RS02160  454965 ..  454983 -  -8.8  -5.85178   AACAGGCAAAAAAAA             GCGCGG GGTGGGG CCGCGC             AAAAAGTATGACATT 100 143
SH05_RS02155  453886 ..  453896 -  -3.2  -4.07968   GAAGACATAATTAAA                 CTCC TGC GAAG                 GCGAGCTTCGTGACA  58 144
SH05_RS02150  452485 ..  452518 -  -9.7  -4.54727   GCTCGCAAAGCAAAA     TTAAGCCAACCTTAA GTTC TTAAGGTTGGCTTTT      ATGTTTGCTGGATTA 100 48
SH05_RS02145  450788 ..  450799 -    -3  -2.93073   CGTCTTCAACAATCA                GAAT TTTC ATTC                 ACTCACTCTCCTGCA  44 20
SH05_RS02140 NONE
SH05_RS02135  448863 ..  448893 - -12.6  -2.66593   ATAAGCTGAAACGGA       TGGCCTGATGTGAC GCT GTCTTATCAGGCCA       ATTGAACTCTTAAGG  88 160
SH05_RS02110  443164 ..  443218 -   -14  -3.21924   GTAGGCCTGATAAGA CGCGCAAGCGTCGCATCAGGCATCTG GCA CCGTTGCCGGATGCGGCGCGAGCGCC TTATCCGGCTTACCG 100 53
SH05_RS02105  442118 ..  442141 -  -4.5  -2.80994   GGGAATTCGATGACA          GTGCGGGAGG GCGGG CCTCCCGG-C          GGGTTATTGCGTTGG  49 29
SH05_RS02100 NONE
SH05_RS02095  440106 ..  440117 -  -5.8  -3.30124   CTGTAGGCCGGATAA                GGTG CTTG CACC                 GCATCCGGCATCAAC  57 91
SH05_RS02090 NONE
SH05_RS02085 NONE
SH05_RS02080 NONE
        phnH NONE
SH05_RS02070 NONE
SH05_RS02065 NONE
        phnK  434826 ..  434837 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCACCGGC  64 41
SH05_RS02055  434072 ..  434086 -    -7  -2.52529   GATAATCATGAAGAG               GCTCCC ATT GGGTGC               AGGCGGTCGGCGACG  55 1
SH05_RS02050 NONE
SH05_RS02045 NONE
SH05_RS02040 NONE
        phnP  431098 ..  431124 -  -2.2  -4.45083   GGGAGAGGGAGAAAA         CGAGCGCAATAT TCA ATATCGAGCACA         ATCGGTCCCCTCGCC  60 92
SH05_RS02020  428921 ..  428936 -  -6.8  -3.13475   TAAGGGGACAGGTAA              CTCCGC GATG GCGGAA               TTACCTTTTTCTTAT  59 37
SH05_RS02015  427814 ..  427828 -  -8.6  -2.91264   CCCGCCATCGATATA               TATGGC GTG GCCATA               AATAACCTCTCTGCA  65 151
SH05_RS02010 NONE
SH05_RS02005 NONE
SH05_RS02000 NONE
SH05_RS01995 NONE
SH05_RS01990  421420 ..  421451 - -10.9  -4.65933   TATTTTTAAAATAAA      TACTTTTGGGGGC TTCAGC GCCCCCAAAAGCG       AGTGACATTAATTTG 100 33
SH05_RS01985 NONE
SH05_RS01980 NONE
SH05_RS01975 NONE
SH05_RS01970  416379 ..  416404 - -11.9  -4.10552   CGTGACGAAACGAAA         TACCGCGTGAC AGCC ATCACGCGGCA          GACATTTTATTTTTT 100 32
SH05_RS01965  415785 ..  415808 -    -6  -2.53581   CAGACCTGCAACCGA          TGGGC-CGTGT CAG ACACGAGCGCA          GCAGTCAACGTTATT  52 11
SH05_RS01960  414032 ..  414051 - -13.6  -5.66684   GAATGGATAAAAAAA            CAGCCTCC GAAA GGAGGCTG             TAGAAAGGACGGTAT 100 40
SH05_RS01955  413105 ..  413134 - -12.9  -3.30124   TTGTAGGTCGGATAA       GGCGTTTATGCCG CATC CGACATCAACGCC        TGATGCGACGCTTAA 100 174
SH05_RS01910  402301 ..  402332 -   -13  -2.60392   CATCCGGCAATCAAT      GCCTGATGCGACGC TGTC GCGTCTTATCAGGC       CTACAAACCGTTACC  91 64
SH05_RS01905 NONE
        actP  400178 ..  400201 - -16.8  -2.79321   GGGAGAGGAAGAGTA          TTCCCCGGTC AGAC GACCGGGGAA           GGGGAGAGATTAATG 100 35
SH05_RS01895  398607 ..  398665 - -15.5  -2.76456   AAAGCGACGTAACCA GGCCCGAGGTAATCTGAAAAAGGTGCAA TCTT TTGCACCTTTAACAGGTTAGCTCGGG-C TAACATTCATGATTC 100 101
SH05_RS01875  393983 ..  394012 - -12.9  -3.19389   CAATGGATGGAGCAA       TTACCCGCGCG GGAGTTAA CGCGCGGGCAA        TAAAATTACAGGCGG  95 31
SH05_RS01865  391689 ..  391711 - -13.5  -5.28176   GCCAGCCATAAAAAA           GAAGCCTCC GTTAT GGAGGCTTC           TACGTATCAGGTCAA 100 32
SH05_RS01855  387981 ..  387999 - -12.4  -4.55128   ACTCTGAAAGGAAAA             GGCCGCTC AGA AAGCGGCC             TTAACGATTACAGCA 100 33
SH05_RS01835  385275 ..  385298 - -14.6  -3.79668   ATGTAATGCAGGAAA          GCAGGCTGGA GCTA CCCAGCCTGC           AGTGAAATTAAACTG 100 214
SH05_RS01815  380177 ..  380197 - -12.6  -5.00267   AACTATAAAAAGAAA            GGGCTTCC CAGGT GGAAGCCC            TATTTCTTTTATGGA 100 34
SH05_RS01790  376152 ..  376171 -  -4.3  -4.77567   ACGTTCAGAAGAAAA            GTGAACG TACTCT CATTCAC             AACCTAACGATGAGG  71 300
SH05_RS01765  370859 ..  370876 - -11.3   -5.1101   TGATGATGTAAAAAA             GCCGGAT GATC ATCCGGC              TTTCTTCTGGGTTGC 100 150
SH05_RS01725 NONE
        malE  362090 ..  362123 -  -9.5  -2.88118   TTATCCGACAACAAC     TGCCTGATGCGACGC TGAC GCGTCTTATCAGGCC      TACATACGTTTCGGT  70 89
        malF NONE
        malG  359496 ..  359513 - -12.7  -5.99154   GACGAAAGAAAAAAA             GGCGCTC CGTG GAGCGCC              GAATAACAGTCACAA 100 96
        xylE  357697 ..  357729 - -11.4  -4.73388   AAGCGGGAGTAAAAA     GT-CAGCACGCCG AAATGGCG CGGCGTGCTGGAC      AGGAAGATTACAGCG 100 33
SH05_RS01690  356700 ..  356727 -  -8.5   -3.6215   CTAAGTCATGGGAAA        GGTGCCAGT TTTCGCACTC ACTGGCACC         TTCATTCTTAATGGC  73 33
SH05_RS01665 NONE
SH05_RS01660  351615 ..  351663 -   -13  -3.30243   ATGTAGGCCGGATAA GGCGTTCACGCCGCATCCGGCA ACCGA TGCCTGATGCGACGCGGTCGCG TCTTATCAGGCCTAC 100 73
SH05_RS01650  348029 ..  348058 -  -7.2  -3.85542   TGACAAGAAAATCAA       TACGGCCCGAAA TATAGC TTCCAGGCCATA        CAGTATTTACTCAAA  70 32
SH05_RS01645  347342 ..  347362 -  -4.5  -4.61527   AAAACGGCGGAAAAA            GGCGGTCGC CCG GCGTCCAAC            GGTAAGCGTTTTACC  72 203
SH05_RS01635  345607 ..  345627 - -11.2  -3.45742   GCACTATGAACAAGA            TGCCGGAT CATGC ATCCGGCA            ATTCACTTAAAAACG  83 32
SH05_RS01620  338729 ..  338739 -  -2.6  -2.80079   AACAGTGAAAAAATT                 TAAT ATG ATTA                 CAACTAAAGAAATAT  42 271
SH05_RS01615  335978 ..  335993 -  -6.8  -5.07053   AAGCAGCGGAAAAAA              TCACCG ATCT CGGCGA               ACAAATTGTGATTCG  90 514
SH05_RS01590  329354 ..  329374 - -10.4  -5.05228   ATCAAATTAGAAAAA           CCCCGGTCC ATAA GG-CCGGGG            TTTTTTGCATATCAA 100 512
SH05_RS01560 NONE
SH05_RS01555 NONE
        purH NONE
SH05_RS01545  320750 ..  320777 - -10.4  -4.36914   CGGCGCTGGAGAAAA        CGGGCGGCAACA AAAC CGAAGCCGCCCG         TCAGTTAGGGATCAC  90 71
        zraP  316979 ..  317020 -  -4.5  -2.62616   GCAGTGGCGATACCA CGA-CGCGAGAGTATCGC TGGCAGG GCGATAACCTCACGCTCA TCAATATCAATGTTT  45 449
SH05_RS01495  312463 ..  312478 -  -7.5  -3.15008   TCCGACAAGAAATTA              GCCCC GCAAAT GGGGC               ATTGAATGTAAATTA  62 60
SH05_RS01490 NONE
SH05_RS01485 NONE
SH05_RS01480 NONE
SH05_RS01475 NONE
SH05_RS01470 NONE
        thiH  306507 ..  306532 - -14.1  -4.17762   CAGCCCTCAAAATAA         CAAAACCCACC TTAA GGTGGGTTTCG          CCAGAGAATTATCTC 100 409
SH05_RS01390 NONE
SH05_RS01385  290233 ..  290250 -  -8.4  -4.80417   CAGAAAAATAAGAAA             GGGGAG TATTCG CTCCCC              TGCAAATTATTTGCG 100 32
SH05_RS01340  278006 ..  278020 -  -4.2  -4.79752   GTGAACAAGAGAAAA               CCGCAA TTA TTCCGG               GAAATGTGAAGGACG  71 444
SH05_RS01325  275274 ..  275287 -  -4.5   -3.1552   GGCTATCTATGAAGA               TCACC CGTG GGCGA                ACCGCGAATGCGTAC  49 397
SH05_RS01300 NONE
SH05_RS01295  269504 ..  269519 -    -4  -3.56594   TCAAATGCTGCGAAA              TCGCTT CAGC AAACGA               ATAAATAGCAGGAAT  52 91
SH05_RS01290  266677 ..  266698 - -13.7  -4.41206   AAGTATTTCAGAAAA           CCCTCGCGC AAAA GCACGAGGG            TTTGCAGAAGAGGAA 100 43
SH05_RS01285  264716 ..  264760 - -17.3  -3.53811   CGGATGTGGCGTAAA CGCCTTATCCAGCCTACCG CCGCGAT CTGTAGGCCGGATAAGACG CGTCAAGCGTCGCAT 100 66
SH05_RS01280  263567 ..  263579 -  -9.1  -2.82834   TAGCGGATGAGGATA                TCCGC CGG GCGGA                TGTTGCTCTGTTGAT  63 181
SH05_RS01250 NONE
SH05_RS01245 NONE
        gldA  254171 ..  254189 - -11.7  -3.53343   AATTTTGCGTTCAAA             CTCCCGG ACAAG CCGGGAG             TTTGGAGTAGGTTAT  89 37
SH05_RS01235  254046 ..  254062 -  -7.9  -2.62983   GGGAGTTTCAGATTA              CTGGCAC AGA GTGCCGG              ATGCGGAGTGAACGC  60 1
SH05_RS01230  252834 ..  252848 -  -4.2  -4.25104   TCTCTTCGATGAAAA               GTGCCA TGC TGGCAA               TCCTCTCCGGCGTCA  62 486
SH05_RS01210  248167 ..  248184 -  -2.6     -2.54   AGCAGGTTACAACAT             CGAACC GGATCA GGTACG              TGTGGAATCGCTGGT  38 516
SH05_RS01195 NONE
SH05_RS01190  243516 ..  243529 -  -9.5  -5.02074   GGATTTCCGAAAAAA               GCGCC GCAC GGCGC                TTTTTTTGTGCCTGA 100 53
SH05_RS01180 NONE
SH05_RS01175  239507 ..  239520 -  -5.2  -2.82987   GCAATAGCGACCATA               GCGG GAGAAA CCGC                AGGCAGATTTCGTTG  50 207
SH05_RS01170  238594 ..  238613 - -13.6  -4.05991   AATACAGAGTACAAA            CCCCGTAC AAAA GTACGGGG             CATAATGCAATTATA 100 63
SH05_RS01165 NONE
        hslU  236639 ..  236656 -  -9.1  -5.06816   ACGCGCCAATAAAAA             TGGGGCC TTTC AGCCCCA              TCAAACAATGATGAA 100 56
SH05_RS01155  235669 ..  235683 -  -5.8  -3.08032   CTGTTGGCAAAATCA               TCAATT GTT AATTGA               TATTTGTCAGTTATG  55 36
SH05_RS01150  235093 ..  235108 - -10.4  -5.31456   GTAACGCAGAAAAAA              GGCACC TTGC GGTGCC               TTTCTTATCATTCAA 100 33
SH05_RS01140 NONE
        glpK NONE
SH05_RS01130  230798 ..  230819 - -13.1   -5.7946   CTCCGAACAAAAAAA           TTCCAGTCC CGAA GGACTGGAA            GGCTCAATCGATCAA 100 46
SH05_RS01125  229734 ..  229756 - -10.8  -3.41024   CCCTGCAACAGAAGA           TATTCTTCAA TTG TTGAAGAATA           AGTCGGATAACAAGC  76 266
SH05_RS01105  227815 ..  227835 -  -5.4  -3.41962   GCGAATAAAGGAAGA           TGGCCGCCC CGCA GGGCAGC-A            GGTCTGTGAAACAGT  57 76
SH05_RS01100  226979 ..  227001 - -13.5   -3.6187   AGTTAAGGAAAGTAA           GTGCCGGAT ATGAA ATCCGGCAC           CTGTCAGACTTAAGC 100 35
SH05_RS01070 NONE
        cpxA  219791 ..  219805 -   -10  -3.30124   GTGTAGGCCTGATAA               GACGCT ATC AGCGTC               GCATCAGGCATCCTG  76 93
SH05_RS01050  217438 ..  217452 -  -5.6   -4.6902   GCAGAATTTGAAAAA               GCGGCA GCT TCCCGC               TTTGGTTCCGGCTGG  75 315
SH05_RS01040  215240 ..  215266 - -10.1  -3.05596   GATTCCGGGATTTAA         CGCCAGCGCAG GGCAA CCACACTGGCG         CTTAGGTAGCATGGG  69 521
        rhaB NONE
SH05_RS01015  210601 ..  210647 - -14.3  -2.57931   CGTAGGCCGGATAAG GCGCTCGCGCCGCATCCGGCA ATCAA TGCCTGATGCGACGCTGTCGC GTCTTATCAGGCCTA  95 372
SH05_RS01010 NONE
SH05_RS01005  209363 ..  209386 -   -11  -2.86093   CGAAATTTAAAATAT          TGTGCCGGAG GCAT CTCTGGCACA           TTGGGCAATTACGGC  77 34
SH05_RS01000 NONE
SH05_RS00995 NONE
SH05_RS00990 NONE
SH05_RS00985  204347 ..  204377 -   -14  -2.97475   TTTTTGATGATAAAT       GCAGTGTCGGATGC GGC GCATCCGACACAGT       TCACCCCTTGTGAAG 100 26
SH05_RS00970 NONE
SH05_RS00965 NONE
SH05_RS00960 NONE
SH05_RS00955 NONE
SH05_RS00950  196459 ..  196471 -  -4.7  -3.62864   TAAATTGAGGCCAAA                CCGGC ACT GGCGG                CATAGCTTGAGGTGG  57 124
SH05_RS00945  196251 ..  196262 -    -3  -5.09426   GGTAATGGGAAAAAA                TGAT GTCA ATCA                 GATTGCTGACAACGT  75 19
SH05_RS00900 NONE
SH05_RS00895 NONE
SH05_RS00890  186668 ..  186696 - -12.6  -2.61274   GGCACCTTAATTAAC       GACATACAGCCTC CCGT GAGGCTG-ATGTC        AAACCCAAAAACTGC  88 115
SH05_RS00885  185634 ..  185644 -  -2.6  -3.01857   CATAAAACTGATATA                 TAAA AAC TTTA                 CAGAAGCTGAGCTGT  43 127
SH05_RS00880 NONE
SH05_RS00875  182053 ..  182066 -  -9.5  -3.30619   AATCACTCCTTATAA               CGCCC CGCA GGGCG                TCGTTTATTATTATT  74 39
SH05_RS00870  180590 ..  180604 -    -7  -2.64472   CATTTTTTAAACGTA               GGGAGG CCG CCACCC               ACCAGGATGGAAATA  56 55
        ompL  179788 ..  179812 - -11.5  -3.37612   CTGAAGCTTAATTAA          TGGCCGGAT GTGCTTA ATCCGGCCA          ACGAAAACCGTATCA  86 87
SH05_RS00840 NONE
        glnA  172705 ..  172722 -    -7  -5.28176   TTGACGGAGAAAAAA             GCCCAT GCAGAG ATGGGC              TACAGATAGCTGACA  89 199
        glnL NONE
        glnG  170132 ..  170155 -  -3.1   -3.5947   AATCTTTACACACAA          GCTGTGAAT CACTCC ATCCCCAGC           TCTTTTAACTTACGC  51 10
SH05_RS00820  169815 ..  169868 - -16.1  -2.57931   TGTAGGCCGGATAAG GCGTTTA-CGCCGCATCAGGCATC TGAGCAT GATGCCTGATGCGGCGCTGGTCGC GTCTTATCAGGCCTA 100 75
SH05_RS00805  166359 ..  166385 -  -7.2  -2.55392   AATCTATTGAATTTA         CGGGCCGGATAC GCC ACATCCGGCACA         AGCATTAAGGCAAGA  58 44
SH05_RS00795  162892 ..  162902 -  -8.2   -3.9122   CAGTGCGCTAAAGAA                 GCGC AAG GCGC                 AGATTTTAGCAGAAA  77 116
SH05_RS00790  161905 ..  161938 -   -14  -3.73042   TTGTTCATTAAAATA     CTCACTCGCCTCTG CTCATT CAGAGGCGAGTAAA      ACTTACTTATTCTGA 100 28
        mobA NONE
SH05_RS00760  157134 ..  157167 -  -7.3  -5.60993   TGGCGCAGAAAAAAA     TGCCGGATGCGACGC TGGC GCGTCTTATCCAGCC      TACTCTTGCTTATCC 100 35
        fadB NONE
        fadA  143512 ..  143530 -  -9.5  -5.76633   TGAGATATAAAAAAA             CCCGCCC CTGAC AGGCGGG             AAGAACGGCAACTAA 100 375
        rfaH  140545 ..  140558 -  -4.5  -2.52623   TGGCGTGGAGAAGAT               GCC-GC ATG GCTGGC               TGCCACCACGGATGC  44 71
SH05_RS00640  131594 ..  131614 - -16.9  -3.92659   GGGGTAAAATCCAAA            CCGGGTGGT AAT ACCACCCGG            TCTTTTCTCATTACA 100 36
SH05_RS00630  127936 ..  127954 -  -2.3  -4.41241   GAAATGCGCAGAAAA             TGCCGCA AACCA CGCTGCA             ATGGGGCATTCTGGT  60 205
        rhtB  124672 ..  124701 - -14.3  -3.25823   GCGTCTTCAGAGTAA       GTCGGATAAGGCG TTTA CGCCGCATCCGAC        ATTATTTTTCACGCA 100 34
SH05_RS00590  120478 ..  120490 -  -4.8  -3.06261   TTTTAATTGGTAACA                GCAG TTTAC CTGC                TTTTATGTCTTCAAC  50 36
SH05_RS00585  119508 ..  119533 -  -8.3  -3.07043   GTCAGCATGGCAATA         TGCCCACTCTC ATGC AAGAGTCGGCA          TATTTTTTCAGAATA  67 51
SH05_RS00580 NONE
SH05_RS00575  118657 ..  118685 -  -7.4  -3.25177   TTGTAAAAAACGAGA        GCGGTGGCTTAG TCTGG CTAAGCCACCTG        TTATTCAAAGGCTCC  64 30
SH05_RS00560  116182 ..  116197 -    -6  -3.02263   AGAGTGTGTGGAAGA              GGTGCG CCTG CGCGCC               ACGGTAAGCCGCCCG  53 391
        cyaY  109975 ..  110004 - -11.5  -3.14211   ATTTTTCGTGATGAA       CGTGCCGGA-AAGC GAG GCTTATCCGGCATG       CAATCTTAGCGGAAA  84 31
        hemC NONE
        hemD NONE
SH05_RS00505 NONE
SH05_RS00500  102923 ..  102948 -    -6  -2.53164   TTATGTATCAGGAAG         GCCCCGGAGG TGCTTG CCTCCGGGTG          AGAAGGAACTACTGT  52 34
SH05_RS00495  100572 ..  100585 -  -6.7  -3.30124   CTGTAGGCTGGATAA               GATGC GTCA GCATC                GCATCCGGCAAAGGC  61 63
SH05_RS00380   80555 ..   80568 -  -5.3  -2.73364   CTTTCACCTGAATCA               CTTAC TACA GTAAG                CTCATCGGGATTCAT  49 93
SH05_RS00375   78790 ..   78805 - -10.4  -3.90922   ACGCTGTGTAAAGAA              CGCCGT CAGT ACGGCG               AACTGGTGCGCCCGG  81 236
SH05_RS00365   76188 ..   76204 - -13.7  -4.18802   ACATATATGGCAAAA              GCCCGGA AAA TCCGGGC              TTCGCAGGTCCCTCA 100 104
SH05_RS00360   75769 ..   75802 -  -9.7  -4.45083   GGGAGAGGGAGAAAA     CACTCAAGGCCTTCTC CTG GAGAAGGCCTTGC-TA     TTAGTTGCGGTACAG 100 26
SH05_RS00350   73154 ..   73181 -  -9.2  -4.65895   CGGGTTAGGGAAAAA        TGCCTGAT-AGCG CTT CGCTTATCAGGCC        TACCCGCGCGACAAC 100 42
SH05_RS00315   64702 ..   64714 -  -6.2  -5.15167   GACGATTAATAAAAA                GGGC GAAAT GCCC                TTTTTTTATGTCAGT  87 31
SH05_RS00305   62937 ..   62958 -  -8.7  -3.91196   CTGATACAGATTAAA           TCAGAACGC AGAA GCGGTCTGA            TGAAACAGAATTTGC  80 466
SH05_RS00270 NONE
SH05_RS00265   55427 ..   55440 -  -4.5  -2.60079   CCATCGGATAACCCA               GCCGA CCCT TCAGC                AACAACGATTACAAC  45 41
SH05_RS00225 NONE
SH05_RS00220   44286 ..   44304 - -10.2  -2.71712   GCTGCGCGGTGAAAT             GCCGCAGA CCA TCGGCGGC             GGTATCGGCCAGTCT  67 144
SH05_RS00210   42731 ..   42753 -  -8.5  -2.92102   ATATCTGCCATAAAC          CGCCAC-CTT TATT AAGAGTGGCG           TATTGTACGCTGTGA  65 88
SH05_RS00205   42198 ..   42212 -  -7.2  -2.66977   CACAACTCAAAAACT               GAACAA CAG TTGTTC               TTTGGATAACTACCG  58 96
        gidA NONE
        gidB   39203 ..   39240 -  -5.2  -5.52384   TGCTTACCAAAAAAA  GCCACGTT-A-TCTTGTTG ATG CAA-AAGAGTGAACGTGGC  GTTAAATGTAACCAG  87 113
SH05_RS00190 NONE
SH05_RS00185 NONE
SH05_RS00180   37215 ..   37227 -  -3.3  -3.88331   TTTAAATAAAAGCAA                CGCTT ACT ACGCG                ACAGCGAACATCACG  53 19
SH05_RS00175 NONE
SH05_RS00170 NONE
SH05_RS00165 NONE
SH05_RS00160   33678 ..   33693 -  -2.4  -3.56366   AATAACCTGTTTAAA              CCGCGG CGGC CCCCGA               GACGATCTCGGTGAG  47 5
SH05_RS00155 NONE
        atpC   31780 ..   31801 - -12.3  -5.76949   CACGCGCAAAAAAAA           GCCAGCCTG TTTC CAGACTGGC            TTTTGTGCTTTTCAA 100 48
        glmU NONE
SH05_RS00140   28082 ..   28101 - -11.4  -5.19251   TAACAGGAAGAAAAA            TGCCCCGC TTAC GCAGGGCA             TCCATTTATTACTCA 100 34
SH05_RS00135   26764 ..   26775 -  -7.2  -2.82635   AGTTTTATTAGTACA                GCGG CTTA CCGC                 TACTGTCTTTAATAT  59 6
        pstC NONE
        pstA   24680 ..   24733 -  -4.3  -2.71364   GCACTTCGCTAATCA GGCTTACCGTAGGCCGGATCAGGCG TTCA CGCCGCATCCGGCAAAGTGTTAACC GTGTACAGAGTCAAA  45 112
SH05_RS00120 NONE
SH05_RS00115   23084 ..   23114 - -14.3  -3.63054   TAAAGTTATATATAA       CAAATCCCAATAA TTAAG TTATTGGGATTTG       TCTGGTGAATTATTT 100 35
SH05_RS00110   21924 ..   21941 -  -4.1  -2.91328   AACCTGAAAAAAACG             GCCTGAC GTGA ATCAAGC              AATTTTTTTCAGGTT  47 86
SH05_RS00105 NONE
SH05_RS00100   18528 ..   18553 - -12.7  -2.64572   GAAAGAATTAACGCA         TCGCATCCAGA CTGT TCTGAATGCGA          CGATAATTAAGGTGC  88 32
SH05_RS00095 NONE
SH05_RS00090 NONE
SH05_RS00085   14901 ..   14928 - -10.6  -3.39438   TAAATAATGAGAACA        GGCCGGA-GCGTA ATT CACACATCCGGCC        TTATTTCTTAAGCTT  78 39
SH05_RS00065   11498 ..   11522 - -12.2  -5.65927   GATCTAAATAAAAAA         CCCGCCA-GCA ATCA TGCATGGCGGG          TTTTTAACGCGCTAT 100 46
