SH02_RS00015 SM01234 SH02_RS00015 SH02_RS00110 SM01061 CAT RNA binding domain SH02_RS00120 SM00382 ATPases associated with a variety of cellular activities SH02_RS00155 SM00382 ATPases associated with a variety of cellular activities SH02_RS00200 SM01228 SH02_RS00200 SH02_RS00210 SM00344 helix_turn_helix ASNC type SH02_RS00220 SM00327 von Willebrand factor (vWF) type A domain SH02_RS00225 SM00382 ATPases associated with a variety of cellular activities SH02_RS00240 SM00382 ATPases associated with a variety of cellular activities SH02_RS00260 SM00354 helix_turn _helix lactose operon repressor SH02_RS00270 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS00270 SM00895 SH02_RS00270 SH02_RS00315 SM00382 ATPases associated with a variety of cellular activities SH02_RS00380 SM00487 DEAD-like helicases superfamily SH02_RS00380 SM00490 helicase superfamily c-terminal domain SH02_RS00395 SM00357 Cold shock protein domain SH02_RS00395 SM00382 ATPases associated with a variety of cellular activities SH02_RS00395 SM00959 Rho termination factor, N-terminal domain SH02_RS00420 SM00984 UDP binding domain SH02_RS00525 SM01219 SH02_RS00525 SH02_RS00600 SM00341 Helicase and RNase D C-terminal SH02_RS00600 SM00487 DEAD-like helicases superfamily SH02_RS00600 SM00490 helicase superfamily c-terminal domain SH02_RS00600 SM00956 SH02_RS00600 SH02_RS00690 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH02_RS00790 SM00563 Phosphate acyltransferases SH02_RS00800 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH02_RS00800 SM00474 3'-5' exonuclease SH02_RS00800 SM00475 5'-3' exonuclease SH02_RS00800 SM00482 DNA polymerase A domain SH02_RS00815 SM00729 Elongator protein 3, MiaB family, Radical SAM SH02_RS00825 SM00382 ATPases associated with a variety of cellular activities SH02_RS00825 SM00448 cheY-homologous receiver domain SH02_RS00830 SM00091 PAS domain SH02_RS00830 SM00387 Histidine kinase-like ATPases SH02_RS00830 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS00835 SM01230 SH02_RS00835 SH02_RS00850 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS00850 SM00866 SH02_RS00850 SH02_RS00895 SM01133 SH02_RS00895 SH02_RS00910 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS00910 SM01134 SH02_RS00910 SH02_RS00970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS01010 SM01007 Class II Aldolase and Adducin N-terminal domain SH02_RS01030 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS01035 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS01065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS01065 SM00387 Histidine kinase-like ATPases SH02_RS01065 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS01070 SM00448 cheY-homologous receiver domain SH02_RS01070 SM00862 Transcriptional regulatory protein, C terminal SH02_RS01160 SM00382 ATPases associated with a variety of cellular activities SH02_RS01160 SM01086 C-terminal, D2-small domain, of ClpB protein SH02_RS01175 SM00354 helix_turn _helix lactose operon repressor SH02_RS01180 SM00487 DEAD-like helicases superfamily SH02_RS01180 SM00490 helicase superfamily c-terminal domain SH02_RS01280 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS01305 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH02_RS01425 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SH02_RS01425 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH02_RS01430 SM00649 Ribosomal protein L11/L12 SH02_RS01455 SM00663 RNA polymerase I subunit A N-terminus SH02_RS01465 SM00876 Biotin and Thiamin Synthesis associated domain SH02_RS01520 SM00411 bacterial (prokaryotic) histone like domain SH02_RS01535 SM00387 Histidine kinase-like ATPases SH02_RS01535 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS01540 SM00382 ATPases associated with a variety of cellular activities SH02_RS01540 SM00448 cheY-homologous receiver domain SH02_RS01545 SM01209 SH02_RS01545 SH02_RS01545 SM01210 SH02_RS01545 SH02_RS01550 SM00798 AICARFT/IMPCHase bienzyme SH02_RS01550 SM00851 MGS-like domain SH02_RS01615 SM00248 ankyrin repeats SH02_RS01620 SM00346 helix_turn_helix isocitrate lyase regulation SH02_RS01625 SM01018 B12 binding domain SH02_RS01640 SM00363 S4 RNA-binding domain SH02_RS01730 SM00382 ATPases associated with a variety of cellular activities SH02_RS01765 SM00563 Phosphate acyltransferases SH02_RS01815 SM00829 Enoylreductase SH02_RS01820 SM00382 ATPases associated with a variety of cellular activities SH02_RS01825 SM01005 Alanine racemase, C-terminal domain SH02_RS01870 SM00052 Putative diguanylate phosphodiesterase SH02_RS01875 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS01880 SM00422 helix_turn_helix, mercury resistance SH02_RS01945 SM00028 Tetratricopeptide repeats SH02_RS01955 SM00671 Sel1-like repeats. SH02_RS01965 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS01990 SM00849 Metallo-beta-lactamase superfamily SH02_RS02010 SM00382 ATPases associated with a variety of cellular activities SH02_RS02045 SM00072 Guanylate kinase homologues. SH02_RS02055 SM00382 ATPases associated with a variety of cellular activities SH02_RS02060 SM00382 ATPases associated with a variety of cellular activities SH02_RS02085 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS02085 SM00866 SH02_RS02085 SH02_RS02100 SM00382 ATPases associated with a variety of cellular activities SH02_RS02135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS02135 SM00387 Histidine kinase-like ATPases SH02_RS02135 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS02140 SM00448 cheY-homologous receiver domain SH02_RS02140 SM00862 Transcriptional regulatory protein, C terminal SH02_RS02155 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS02165 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS02205 SM00448 cheY-homologous receiver domain SH02_RS02210 SM00091 PAS domain SH02_RS02210 SM00387 Histidine kinase-like ATPases SH02_RS02255 SM00862 Transcriptional regulatory protein, C terminal SH02_RS02300 SM00883 Chaperonin 10 Kd subunit SH02_RS02325 SM00841 Elongation factor P, C-terminal SH02_RS02325 SM01185 SH02_RS02325 SH02_RS02410 SM00479 SH02_RS02410 SH02_RS02445 SM00646 SH02_RS02445 SH02_RS02450 SM00853 MutL C terminal dimerisation domain SH02_RS02450 SM01340 SH02_RS02450 SH02_RS02470 SM00244 prohibitin homologues SH02_RS02475 SM00244 prohibitin homologues SH02_RS02485 SM00788 Adenylosuccinate synthetase SH02_RS02495 SM00316 Ribosomal protein S1-like RNA-binding domain SH02_RS02495 SM00357 Cold shock protein domain SH02_RS02495 SM00955 SH02_RS02495 SH02_RS02500 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH02_RS02555 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS02555 SM01134 SH02_RS02555 SH02_RS02580 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH02_RS02590 SM01007 Class II Aldolase and Adducin N-terminal domain SH02_RS02695 SM01091 Transporter associated domain SH02_RS02725 SM00966 SpoVT / AbrB like domain SH02_RS02745 SM00382 ATPases associated with a variety of cellular activities SH02_RS02795 SM00642 Alpha-amylase domain SH02_RS02805 SM00354 helix_turn _helix lactose operon repressor SH02_RS02810 SM00831 Cation transporter/ATPase, N-terminus SH02_RS02845 SM00822 SH02_RS02845 SH02_RS02915 SM00354 helix_turn _helix lactose operon repressor SH02_RS02940 SM00829 Enoylreductase SH02_RS03045 SM00382 ATPases associated with a variety of cellular activities SH02_RS03065 SM00965 Secretin and TonB N terminus short domain SH02_RS03115 SM01130 SH02_RS03115 SH02_RS03120 SM00346 helix_turn_helix isocitrate lyase regulation SH02_RS03125 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS03125 SM01134 SH02_RS03125 SH02_RS03295 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS03295 SM00895 SH02_RS03295 SH02_RS03395 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS03410 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH02_RS03430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH02_RS03430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS03430 SM00319 Homologues of the ligand binding domain of Tar SH02_RS03440 SM00895 SH02_RS03440 SH02_RS03445 SM00829 Enoylreductase SH02_RS03460 SM00382 ATPases associated with a variety of cellular activities SH02_RS03480 SM00421 helix_turn_helix, Lux Regulon SH02_RS03485 SM00421 helix_turn_helix, Lux Regulon SH02_RS03540 SM00749 bacterial OsmY and nodulation domain SH02_RS03575 SM01133 SH02_RS03575 SH02_RS03580 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SH02_RS03615 SM00382 ATPases associated with a variety of cellular activities SH02_RS03620 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS03630 SM00382 ATPases associated with a variety of cellular activities SH02_RS03650 SM00855 Phosphoglycerate mutase family SH02_RS03655 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS03655 SM00871 Bacterial transcription activator, effector binding domain SH02_RS03665 SM00448 cheY-homologous receiver domain SH02_RS03665 SM00862 Transcriptional regulatory protein, C terminal SH02_RS03670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS03670 SM00387 Histidine kinase-like ATPases SH02_RS03670 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS03680 SM00448 cheY-homologous receiver domain SH02_RS03680 SM00862 Transcriptional regulatory protein, C terminal SH02_RS03740 SM00852 Probable molybdopterin binding domain SH02_RS03765 SM00271 DnaJ molecular chaperone homology domain SH02_RS03805 SM00904 Riboflavin kinase SH02_RS03850 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SH02_RS03855 SM00851 MGS-like domain SH02_RS03855 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH02_RS03900 SM00893 Electron transfer flavoprotein domain SH02_RS03905 SM00893 Electron transfer flavoprotein domain SH02_RS03950 SM00650 Ribosomal RNA adenine dimethylases SH02_RS03970 SM00271 DnaJ molecular chaperone homology domain SH02_RS03985 SM00487 DEAD-like helicases superfamily SH02_RS03985 SM00490 helicase superfamily c-terminal domain SH02_RS03990 SM00486 DNA polymerase type-B family SH02_RS03995 SM01007 Class II Aldolase and Adducin N-terminal domain SH02_RS04010 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS04020 SM00382 ATPases associated with a variety of cellular activities SH02_RS04060 SM01329 SH02_RS04060 SH02_RS04065 SM00917 LeuA allosteric (dimerisation) domain SH02_RS04095 SM00354 helix_turn _helix lactose operon repressor SH02_RS04165 SM00842 Cell division protein FtsA SH02_RS04170 SM00864 Tubulin/FtsZ family, GTPase domain SH02_RS04170 SM00865 Tubulin/FtsZ family, C-terminal domain SH02_RS04185 SM00957 SecA DEAD-like domain SH02_RS04185 SM00958 SecA preprotein cross-linking domain SH02_RS04215 SM01240 SH02_RS04215 SH02_RS04245 SM00644 SH02_RS04245 SH02_RS04260 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS04260 SM00895 SH02_RS04260 SH02_RS04315 SM00564 beta-propeller repeat SH02_RS04325 SM00947 Carbonic anhydrase SH02_RS04330 SM00382 ATPases associated with a variety of cellular activities SH02_RS04435 SM00487 DEAD-like helicases superfamily SH02_RS04435 SM00490 helicase superfamily c-terminal domain SH02_RS04435 SM00847 Helicase associated domain (HA2) Add an annotation SH02_RS04470 SM00382 ATPases associated with a variety of cellular activities SH02_RS04515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH02_RS04520 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH02_RS04545 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH02_RS04590 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH02_RS04600 SM00935 Outer membrane protein (OmpH-like) SH02_RS04630 SM00481 DNA polymerase alpha chain like domain SH02_RS04650 SM00977 TilS substrate C-terminal domain SH02_RS04665 SM01322 SH02_RS04665 SH02_RS04710 SM00382 ATPases associated with a variety of cellular activities SH02_RS04710 SM00930 SH02_RS04710 SH02_RS04770 SM00257 Lysin motif SH02_RS04775 SM00849 Metallo-beta-lactamase superfamily SH02_RS04790 SM00479 SH02_RS04790 SH02_RS04865 SM01321 SH02_RS04865 SH02_RS04935 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH02_RS05050 SM00382 ATPases associated with a variety of cellular activities SH02_RS05085 SM01130 SH02_RS05085 SH02_RS05105 SM00346 helix_turn_helix isocitrate lyase regulation SH02_RS05170 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH02_RS05175 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH02_RS05220 SM00421 helix_turn_helix, Lux Regulon SH02_RS05260 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS05280 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS05335 SM00052 Putative diguanylate phosphodiesterase SH02_RS05335 SM00421 helix_turn_helix, Lux Regulon SH02_RS05350 SM00248 ankyrin repeats SH02_RS05385 SM00829 Enoylreductase SH02_RS05410 SM00382 ATPases associated with a variety of cellular activities SH02_RS05450 SM00947 Carbonic anhydrase SH02_RS05455 SM01116 SH02_RS05455 SH02_RS05465 SM01266 SH02_RS05465 SH02_RS05485 SM00346 helix_turn_helix isocitrate lyase regulation SH02_RS05510 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH02_RS05535 SM00829 Enoylreductase SH02_RS05575 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS05580 SM00382 ATPases associated with a variety of cellular activities SH02_RS05595 SM01004 Delta-aminolevulinic acid dehydratase SH02_RS05620 SM00869 Autotransporter beta-domain SH02_RS05675 SM00098 Alkaline phosphatase homologues SH02_RS05685 SM00267 diguanylate cyclase SH02_RS05755 SM00448 cheY-homologous receiver domain SH02_RS05755 SM00862 Transcriptional regulatory protein, C terminal SH02_RS05760 SM00091 PAS domain SH02_RS05760 SM00387 Histidine kinase-like ATPases SH02_RS05760 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS05775 SM00642 Alpha-amylase domain SH02_RS05795 SM01323 SH02_RS05795 SH02_RS05810 SM00507 HNH nucleases SH02_RS05865 SM00861 Transketolase, pyrimidine binding domain SH02_RS05880 SM00981 SH02_RS05880 SH02_RS05960 SM00382 ATPases associated with a variety of cellular activities SH02_RS05960 SM00994 ClpX C4-type zinc finger SH02_RS05960 SM01086 C-terminal, D2-small domain, of ClpB protein SH02_RS05965 SM00382 ATPases associated with a variety of cellular activities SH02_RS05965 SM00464 Found in ATP-dependent protease La (LON) SH02_RS05970 SM00411 bacterial (prokaryotic) histone like domain SH02_RS05980 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH02_RS06005 SM00344 helix_turn_helix ASNC type SH02_RS06010 SM00382 ATPases associated with a variety of cellular activities SH02_RS06015 SM00382 ATPases associated with a variety of cellular activities SH02_RS06020 SM00938 Nitrogen regulatory protein P-II SH02_RS06050 SM00052 Putative diguanylate phosphodiesterase SH02_RS06060 SM01266 SH02_RS06060 SH02_RS06120 SM00382 ATPases associated with a variety of cellular activities SH02_RS06130 SM00493 SH02_RS06130 SH02_RS06135 SM00387 Histidine kinase-like ATPases SH02_RS06185 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS06205 SM00422 helix_turn_helix, mercury resistance SH02_RS06215 SM00244 prohibitin homologues SH02_RS06220 SM00382 ATPases associated with a variety of cellular activities SH02_RS06235 SM00822 SH02_RS06235 SH02_RS06245 SM00382 ATPases associated with a variety of cellular activities SH02_RS06280 SM00450 Rhodanese Homology Domain SH02_RS06295 SM00346 helix_turn_helix isocitrate lyase regulation SH02_RS06375 SM01001 AIR carboxylase SH02_RS06390 SM00840 SH02_RS06390 SH02_RS06435 SM00421 helix_turn_helix, Lux Regulon SH02_RS06435 SM00448 cheY-homologous receiver domain SH02_RS06490 SM00857 Resolvase, N terminal domain SH02_RS06500 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS06595 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS06610 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS06620 SM00028 Tetratricopeptide repeats SH02_RS06630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS06630 SM00387 Histidine kinase-like ATPases SH02_RS06630 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS06635 SM00448 cheY-homologous receiver domain SH02_RS06635 SM00862 Transcriptional regulatory protein, C terminal SH02_RS06720 SM00923 MbtH-like protein SH02_RS06725 SM00823 Phosphopantetheine attachment site SH02_RS06725 SM00824 Thioesterase SH02_RS06735 SM00382 ATPases associated with a variety of cellular activities SH02_RS06775 SM00822 SH02_RS06775 SH02_RS06805 SM00470 ParB-like nuclease domain SH02_RS06890 SM00764 Citrate lyase ligase C-terminal domain SH02_RS06895 SM00091 PAS domain SH02_RS06895 SM00387 Histidine kinase-like ATPases SH02_RS06900 SM00448 cheY-homologous receiver domain SH02_RS06915 SM00357 Cold shock protein domain SH02_RS06935 SM00729 Elongator protein 3, MiaB family, Radical SAM SH02_RS06960 SM00936 Penicillin-binding protein 5, C-terminal domain SH02_RS06990 SM00855 Phosphoglycerate mutase family SH02_RS07020 SM00671 Sel1-like repeats. SH02_RS07030 SM00271 DnaJ molecular chaperone homology domain SH02_RS07035 SM00671 Sel1-like repeats. SH02_RS07060 SM00382 ATPases associated with a variety of cellular activities SH02_RS07075 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS07090 SM00116 Domain in cystathionine beta-synthase and other proteins. SH02_RS07090 SM01091 Transporter associated domain SH02_RS07105 SM00729 Elongator protein 3, MiaB family, Radical SAM SH02_RS07265 SM00448 cheY-homologous receiver domain SH02_RS07265 SM00862 Transcriptional regulatory protein, C terminal SH02_RS07270 SM00387 Histidine kinase-like ATPases SH02_RS07270 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS07355 SM00796 Allophanate hydrolase subunit 1 SH02_RS07360 SM00797 Allophanate hydrolase subunit 2 SH02_RS07370 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH02_RS07370 SM01232 SH02_RS07370 SH02_RS07435 SM00861 Transketolase, pyrimidine binding domain SH02_RS07450 SM00881 CoA binding domain SH02_RS07455 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS07455 SM00866 SH02_RS07455 SH02_RS07465 SM00872 Alpha mannosidase, middle domain SH02_RS07595 SM00855 Phosphoglycerate mutase family SH02_RS07620 SM00382 ATPases associated with a variety of cellular activities SH02_RS07645 SM00382 ATPases associated with a variety of cellular activities SH02_RS07695 SM00729 Elongator protein 3, MiaB family, Radical SAM SH02_RS07695 SM00876 Biotin and Thiamin Synthesis associated domain SH02_RS07715 SM00487 DEAD-like helicases superfamily SH02_RS07715 SM00490 helicase superfamily c-terminal domain SH02_RS07730 SM00729 Elongator protein 3, MiaB family, Radical SAM SH02_RS07735 SM00852 Probable molybdopterin binding domain SH02_RS07770 SM00155 Phospholipase D. Active site motifs. SH02_RS07795 SM00382 ATPases associated with a variety of cellular activities SH02_RS07810 SM00487 DEAD-like helicases superfamily SH02_RS07810 SM00490 helicase superfamily c-terminal domain SH02_RS07820 SM00487 DEAD-like helicases superfamily SH02_RS07820 SM00488 SH02_RS07820 SH02_RS07820 SM00491 SH02_RS07820 SH02_RS07845 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. SH02_RS07870 SM00382 ATPases associated with a variety of cellular activities SH02_RS07880 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS07880 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH02_RS07915 SM00529 Helix-turn-helix diphteria tox regulatory element SH02_RS07930 SM00382 ATPases associated with a variety of cellular activities SH02_RS07965 SM00852 Probable molybdopterin binding domain SH02_RS07975 SM00382 ATPases associated with a variety of cellular activities SH02_RS08000 SM00267 diguanylate cyclase SH02_RS08005 SM00729 Elongator protein 3, MiaB family, Radical SAM SH02_RS08025 SM00936 Penicillin-binding protein 5, C-terminal domain SH02_RS08030 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS08030 SM01134 SH02_RS08030 SH02_RS08035 SM00014 Acid phosphatase homologues SH02_RS08110 SM00382 ATPases associated with a variety of cellular activities SH02_RS08135 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS08135 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH02_RS08150 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS08150 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH02_RS08155 SM00382 ATPases associated with a variety of cellular activities SH02_RS08170 SM00644 SH02_RS08170 SH02_RS08235 SM00382 ATPases associated with a variety of cellular activities SH02_RS08240 SM00357 Cold shock protein domain SH02_RS08250 SM00382 ATPases associated with a variety of cellular activities SH02_RS08250 SM01086 C-terminal, D2-small domain, of ClpB protein SH02_RS08260 SM00316 Ribosomal protein S1-like RNA-binding domain SH02_RS08270 SM00382 ATPases associated with a variety of cellular activities SH02_RS08275 SM00382 ATPases associated with a variety of cellular activities SH02_RS08285 SM00344 helix_turn_helix ASNC type SH02_RS08290 SM00843 SH02_RS08290 SH02_RS08300 SM00382 ATPases associated with a variety of cellular activities SH02_RS08310 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS08395 SM00316 Ribosomal protein S1-like RNA-binding domain SH02_RS08400 SM00411 bacterial (prokaryotic) histone like domain SH02_RS08405 SM00849 Metallo-beta-lactamase superfamily SH02_RS08410 SM00382 ATPases associated with a variety of cellular activities SH02_RS08475 SM00849 Metallo-beta-lactamase superfamily SH02_RS08510 SM00382 ATPases associated with a variety of cellular activities SH02_RS08525 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS08585 SM00981 SH02_RS08585 SH02_RS08590 SM00382 ATPases associated with a variety of cellular activities SH02_RS08665 SM00851 MGS-like domain SH02_RS08680 SM00881 CoA binding domain SH02_RS08685 SM00992 Hemimethylated DNA-binding protein YccV like SH02_RS08690 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SH02_RS08770 SM00226 Low molecular weight phosphatase family SH02_RS08810 SM00357 Cold shock protein domain SH02_RS08815 SM00357 Cold shock protein domain SH02_RS08835 SM00073 Histidine Phosphotransfer domain SH02_RS08835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS08835 SM00387 Histidine kinase-like ATPases SH02_RS08835 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS08835 SM00448 cheY-homologous receiver domain SH02_RS08845 SM00448 cheY-homologous receiver domain SH02_RS08845 SM00862 Transcriptional regulatory protein, C terminal SH02_RS08870 SM00271 DnaJ molecular chaperone homology domain SH02_RS08910 SM00903 Flavin reductase like domain SH02_RS09005 SM00028 Tetratricopeptide repeats SH02_RS09010 SM00267 diguanylate cyclase SH02_RS09050 SM00481 DNA polymerase alpha chain like domain SH02_RS09080 SM00421 helix_turn_helix, Lux Regulon SH02_RS09110 SM00506 Appr-1"-p processing enzyme SH02_RS09115 SM00155 Phospholipase D. Active site motifs. SH02_RS09170 SM00450 Rhodanese Homology Domain SH02_RS09175 SM00867 YceI-like domain SH02_RS09255 SM00858 SH02_RS09255 SH02_RS09300 SM00047 Lysozyme subfamily 2 SH02_RS09315 SM00316 Ribosomal protein S1-like RNA-binding domain SH02_RS09325 SM00363 S4 RNA-binding domain SH02_RS09355 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SH02_RS09360 SM00822 SH02_RS09360 SH02_RS09370 SM00825 Beta-ketoacyl synthase SH02_RS09460 SM00257 Lysin motif SH02_RS09465 SM00487 DEAD-like helicases superfamily SH02_RS09465 SM00490 helicase superfamily c-terminal domain SH02_RS09465 SM00982 SH02_RS09465 SH02_RS09465 SM01058 CarD-like/TRCF domain SH02_RS09480 SM00382 ATPases associated with a variety of cellular activities SH02_RS09525 SM00382 ATPases associated with a variety of cellular activities SH02_RS09540 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. SH02_RS09545 SM00387 Histidine kinase-like ATPases SH02_RS09550 SM00448 cheY-homologous receiver domain SH02_RS09550 SM00862 Transcriptional regulatory protein, C terminal SH02_RS09580 SM01329 SH02_RS09580 SH02_RS09680 SM00857 Resolvase, N terminal domain SH02_RS09685 SM00507 HNH nucleases SH02_RS09705 SM00422 helix_turn_helix, mercury resistance SH02_RS09710 SM00052 Putative diguanylate phosphodiesterase SH02_RS09710 SM01034 Sensors of blue-light using FAD SH02_RS09735 SM00052 Putative diguanylate phosphodiesterase SH02_RS09850 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS09865 SM01005 Alanine racemase, C-terminal domain SH02_RS09870 SM01091 Transporter associated domain SH02_RS09910 SM01120 SH02_RS09910 SH02_RS09920 SM00091 PAS domain SH02_RS09920 SM00382 ATPases associated with a variety of cellular activities SH02_RS09925 SM00869 Autotransporter beta-domain SH02_RS09955 SM01400 SH02_RS09955 SH02_RS09975 SM00937 SH02_RS09975 SH02_RS10040 SM00421 helix_turn_helix, Lux Regulon SH02_RS10040 SM00448 cheY-homologous receiver domain SH02_RS10045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS10045 SM00387 Histidine kinase-like ATPases SH02_RS10060 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS10120 SM00528 Domain in histone-like proteins of HNS family SH02_RS10165 SM00382 ATPases associated with a variety of cellular activities SH02_RS10170 SM00382 ATPases associated with a variety of cellular activities SH02_RS10180 SM00155 Phospholipase D. Active site motifs. SH02_RS10265 SM00481 DNA polymerase alpha chain like domain SH02_RS10280 SM00363 S4 RNA-binding domain SH02_RS10290 SM00822 SH02_RS10290 SH02_RS10315 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH02_RS10315 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH02_RS10315 SM00493 SH02_RS10315 SH02_RS10350 SM00014 Acid phosphatase homologues SH02_RS10360 SM00028 Tetratricopeptide repeats SH02_RS10365 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH02_RS10380 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS10380 SM01134 SH02_RS10380 SH02_RS10390 SM00052 Putative diguanylate phosphodiesterase SH02_RS10390 SM00091 PAS domain SH02_RS10390 SM00267 diguanylate cyclase SH02_RS10400 SM00357 Cold shock protein domain SH02_RS10400 SM00955 SH02_RS10400 SH02_RS10420 SM00382 ATPases associated with a variety of cellular activities SH02_RS10425 SM00382 ATPases associated with a variety of cellular activities SH02_RS10460 SM01230 SH02_RS10460 SH02_RS10470 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS10490 SM00382 ATPases associated with a variety of cellular activities SH02_RS10515 SM00450 Rhodanese Homology Domain SH02_RS10520 SM00642 Alpha-amylase domain SH02_RS10575 SM00354 helix_turn _helix lactose operon repressor SH02_RS10590 SM00091 PAS domain SH02_RS10590 SM00382 ATPases associated with a variety of cellular activities SH02_RS10600 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH02_RS10655 SM00100 Cyclic nucleotide-monophosphate binding domain SH02_RS10655 SM00419 helix_turn_helix, cAMP Regulatory protein SH02_RS10695 SM00463 Small MutS-related domain SH02_RS10700 SM00091 PAS domain SH02_RS10700 SM00267 diguanylate cyclase SH02_RS10715 SM00487 DEAD-like helicases superfamily SH02_RS10715 SM00490 helicase superfamily c-terminal domain SH02_RS10815 SM00470 ParB-like nuclease domain SH02_RS10870 SM00857 Resolvase, N terminal domain SH02_RS10890 SM00890 Domain of unknown function SH02_RS10925 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS11060 SM00195 Dual specificity phosphatase, catalytic domain SH02_RS11060 SM00404 Protein tyrosine phosphatase, catalytic domain motif SH02_RS11070 SM00382 ATPases associated with a variety of cellular activities SH02_RS11070 SM00487 DEAD-like helicases superfamily SH02_RS11070 SM00490 helicase superfamily c-terminal domain SH02_RS11070 SM00847 Helicase associated domain (HA2) Add an annotation SH02_RS11115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH02_RS11115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS11115 SM00319 Homologues of the ligand binding domain of Tar SH02_RS11125 SM01150 SH02_RS11125 SH02_RS11175 SM01321 SH02_RS11175 SH02_RS11190 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS11210 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS11215 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS11225 SM00382 ATPases associated with a variety of cellular activities SH02_RS11270 SM00829 Enoylreductase SH02_RS11275 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS11275 SM00895 SH02_RS11275 SH02_RS11330 SM00903 Flavin reductase like domain SH02_RS11360 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS11385 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS11405 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS11410 SM00829 Enoylreductase SH02_RS11415 SM00919 Malic enzyme, NAD binding domain SH02_RS11415 SM01274 SH02_RS11415 SH02_RS11435 SM00382 ATPases associated with a variety of cellular activities SH02_RS11440 SM00382 ATPases associated with a variety of cellular activities SH02_RS11465 SM00052 Putative diguanylate phosphodiesterase SH02_RS11465 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH02_RS11465 SM00091 PAS domain SH02_RS11465 SM00267 diguanylate cyclase SH02_RS11470 SM00267 diguanylate cyclase SH02_RS11505 SM00382 ATPases associated with a variety of cellular activities SH02_RS11520 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS11565 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS11570 SM00869 Autotransporter beta-domain SH02_RS11590 SM00382 ATPases associated with a variety of cellular activities SH02_RS11610 SM01133 SH02_RS11610 SH02_RS11640 SM00267 diguanylate cyclase SH02_RS11680 SM00347 helix_turn_helix multiple antibiotic resistance protein SH02_RS11685 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS11710 SM00267 diguanylate cyclase SH02_RS11735 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS11735 SM00895 SH02_RS11735 SH02_RS11760 SM00857 Resolvase, N terminal domain SH02_RS11800 SM00357 Cold shock protein domain SH02_RS11825 SM00357 Cold shock protein domain SH02_RS11830 SM00357 Cold shock protein domain SH02_RS11840 SM00507 HNH nucleases SH02_RS11885 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS11935 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH02_RS11965 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS11970 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS12050 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SH02_RS12050 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SH02_RS12075 SM00448 cheY-homologous receiver domain SH02_RS12075 SM00862 Transcriptional regulatory protein, C terminal SH02_RS12080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS12080 SM00387 Histidine kinase-like ATPases SH02_RS12080 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS12135 SM00354 helix_turn _helix lactose operon repressor SH02_RS12195 SM00900 SH02_RS12195 SH02_RS12205 SM00478 endonuclease III SH02_RS12205 SM00525 SH02_RS12205 SH02_RS12230 SM00363 S4 RNA-binding domain SH02_RS12255 SM00347 helix_turn_helix multiple antibiotic resistance protein SH02_RS12305 SM00479 SH02_RS12305 SH02_RS12310 SM00382 ATPases associated with a variety of cellular activities SH02_RS12310 SM00487 DEAD-like helicases superfamily SH02_RS12310 SM00490 helicase superfamily c-terminal domain SH02_RS12340 SM00354 helix_turn _helix lactose operon repressor SH02_RS12415 SM00790 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH02_RS12440 SM00257 Lysin motif SH02_RS12460 SM00382 ATPases associated with a variety of cellular activities SH02_RS12520 SM00882 Coenzyme A transferase SH02_RS12530 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS12540 SM00893 Electron transfer flavoprotein domain SH02_RS12545 SM00893 Electron transfer flavoprotein domain SH02_RS12620 SM00411 bacterial (prokaryotic) histone like domain SH02_RS12625 SM00873 B3/4 domain SH02_RS12625 SM00874 tRNA synthetase B5 domain SH02_RS12625 SM00896 Ferredoxin-fold anticodon binding domain SH02_RS12655 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH02_RS12720 SM01060 SH02_RS12720 SH02_RS12735 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS12770 SM00465 GIY-YIG type nucleases (URI domain) SH02_RS12845 SM00382 ATPases associated with a variety of cellular activities SH02_RS12850 SM00450 Rhodanese Homology Domain SH02_RS12870 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH02_RS12880 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SH02_RS12880 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SH02_RS12880 SM00493 SH02_RS12880 SH02_RS12910 SM00870 SH02_RS12910 SH02_RS12925 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS12925 SM01134 SH02_RS12925 SH02_RS12945 SM00829 Enoylreductase SH02_RS12970 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH02_RS12990 SM00763 PrkA AAA domain SH02_RS13000 SM00267 diguanylate cyclase SH02_RS13005 SM00267 diguanylate cyclase SH02_RS13025 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS13045 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH02_RS13045 SM00267 diguanylate cyclase SH02_RS13080 SM01329 SH02_RS13080 SH02_RS13100 SM00341 Helicase and RNase D C-terminal SH02_RS13100 SM00474 3'-5' exonuclease SH02_RS13120 SM00487 DEAD-like helicases superfamily SH02_RS13120 SM00491 SH02_RS13120 SH02_RS13155 SM00052 Putative diguanylate phosphodiesterase SH02_RS13160 SM01091 Transporter associated domain SH02_RS13205 SM00357 Cold shock protein domain SH02_RS13235 SM00346 helix_turn_helix isocitrate lyase regulation SH02_RS13250 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH02_RS13250 SM00245 tail specific protease SH02_RS13255 SM00945 ProQ/FINO family SH02_RS13260 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH02_RS13325 SM00479 SH02_RS13325 SH02_RS13395 SM00257 Lysin motif SH02_RS13405 SM00382 ATPases associated with a variety of cellular activities SH02_RS13415 SM00382 ATPases associated with a variety of cellular activities SH02_RS13420 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH02_RS13495 SM00836 DALR anticodon binding domain SH02_RS13495 SM01016 Arginyl tRNA synthetase N terminal dom SH02_RS13525 SM00448 cheY-homologous receiver domain SH02_RS13530 SM00448 cheY-homologous receiver domain SH02_RS13535 SM00138 Methyltransferase, chemotaxis proteins SH02_RS13540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH02_RS13540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS13540 SM00319 Homologues of the ligand binding domain of Tar SH02_RS13545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH02_RS13545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS13545 SM00319 Homologues of the ligand binding domain of Tar SH02_RS13550 SM00260 Two component signalling adaptor domain SH02_RS13555 SM00073 Histidine Phosphotransfer domain SH02_RS13555 SM00260 Two component signalling adaptor domain SH02_RS13555 SM00387 Histidine kinase-like ATPases SH02_RS13555 SM01231 SH02_RS13555 SH02_RS13600 SM00382 ATPases associated with a variety of cellular activities SH02_RS13670 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH02_RS13670 SM00465 GIY-YIG type nucleases (URI domain) SH02_RS13675 SM00421 helix_turn_helix, Lux Regulon SH02_RS13675 SM00448 cheY-homologous receiver domain SH02_RS13690 SM00421 helix_turn_helix, Lux Regulon SH02_RS13695 SM00382 ATPases associated with a variety of cellular activities SH02_RS13710 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS13710 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SH02_RS13745 SM00642 Alpha-amylase domain SH02_RS13810 SM00382 ATPases associated with a variety of cellular activities SH02_RS13860 SM00421 helix_turn_helix, Lux Regulon SH02_RS13880 SM00267 diguanylate cyclase SH02_RS13910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH02_RS13940 SM00387 Histidine kinase-like ATPases SH02_RS13940 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS13945 SM00448 cheY-homologous receiver domain SH02_RS13945 SM00862 Transcriptional regulatory protein, C terminal SH02_RS13950 SM00095 Transthyretin SH02_RS13995 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins SH02_RS13995 SM00634 Bacterial Ig-like domain (group 1) SH02_RS14105 SM00869 Autotransporter beta-domain SH02_RS14160 SM00871 Bacterial transcription activator, effector binding domain SH02_RS14165 SM00936 Penicillin-binding protein 5, C-terminal domain SH02_RS14170 SM00479 SH02_RS14170 SH02_RS14255 SM00984 UDP binding domain SH02_RS14260 SM01350 SH02_RS14260 SH02_RS14420 SM00226 Low molecular weight phosphatase family SH02_RS14430 SM00116 Domain in cystathionine beta-synthase and other proteins. SH02_RS14430 SM01091 Transporter associated domain SH02_RS14450 SM00052 Putative diguanylate phosphodiesterase SH02_RS14450 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH02_RS14450 SM00091 PAS domain SH02_RS14450 SM00267 diguanylate cyclase SH02_RS14455 SM00478 endonuclease III SH02_RS14455 SM01009 AlkA N-terminal domain SH02_RS14485 SM00327 von Willebrand factor (vWF) type A domain SH02_RS14510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS14510 SM00387 Histidine kinase-like ATPases SH02_RS14510 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS14515 SM00448 cheY-homologous receiver domain SH02_RS14515 SM00862 Transcriptional regulatory protein, C terminal SH02_RS14545 SM00046 Diacylglycerol kinase catalytic domain (presumed) SH02_RS14550 SM01134 SH02_RS14550 SH02_RS14565 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS14570 SM00829 Enoylreductase SH02_RS14600 SM01133 SH02_RS14600 SH02_RS14620 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS14620 SM00866 SH02_RS14620 SH02_RS14625 SM00641 Glycosyl hydrolases family 25 SH02_RS14695 SM00773 Proposed nucleic acid binding domain SH02_RS14715 SM00382 ATPases associated with a variety of cellular activities SH02_RS14725 SM00327 von Willebrand factor (vWF) type A domain SH02_RS14745 SM00448 cheY-homologous receiver domain SH02_RS14745 SM00850 LytTr DNA-binding domain SH02_RS14750 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH02_RS14755 SM00422 helix_turn_helix, mercury resistance SH02_RS14770 SM00382 ATPases associated with a variety of cellular activities SH02_RS14785 SM01217 SH02_RS14785 SH02_RS14885 SM00354 helix_turn _helix lactose operon repressor SH02_RS14935 SM00518 AP endonuclease family 2 SH02_RS14955 SM00100 Cyclic nucleotide-monophosphate binding domain SH02_RS15000 SM00841 Elongation factor P, C-terminal SH02_RS15000 SM01185 SH02_RS15000 SH02_RS15010 SM00833 Cobalamin synthesis protein cobW C-terminal domain SH02_RS15015 SM00014 Acid phosphatase homologues SH02_RS15025 SM00052 Putative diguanylate phosphodiesterase SH02_RS15045 SM00382 ATPases associated with a variety of cellular activities SH02_RS15060 SM00363 S4 RNA-binding domain SH02_RS15065 SM00487 DEAD-like helicases superfamily SH02_RS15065 SM00490 helicase superfamily c-terminal domain SH02_RS15095 SM00869 Autotransporter beta-domain SH02_RS15110 SM00421 helix_turn_helix, Lux Regulon SH02_RS15110 SM00448 cheY-homologous receiver domain SH02_RS15150 SM00382 ATPases associated with a variety of cellular activities SH02_RS15175 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS15205 SM00382 ATPases associated with a variety of cellular activities SH02_RS15215 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS15240 SM00387 Histidine kinase-like ATPases SH02_RS15245 SM00421 helix_turn_helix, Lux Regulon SH02_RS15245 SM00448 cheY-homologous receiver domain SH02_RS15250 SM00387 Histidine kinase-like ATPases SH02_RS15250 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS15250 SM00448 cheY-homologous receiver domain SH02_RS15255 SM00091 PAS domain SH02_RS15255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS15255 SM00387 Histidine kinase-like ATPases SH02_RS15255 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS15260 SM00382 ATPases associated with a variety of cellular activities SH02_RS15260 SM00448 cheY-homologous receiver domain SH02_RS15265 SM00882 Coenzyme A transferase SH02_RS15270 SM00882 Coenzyme A transferase SH02_RS15300 SM01359 SH02_RS15300 SH02_RS15300 SM01360 SH02_RS15300 SH02_RS15315 SM00434 DNA Topoisomerase IV SH02_RS15325 SM00869 Autotransporter beta-domain SH02_RS15410 SM00346 helix_turn_helix isocitrate lyase regulation SH02_RS15415 SM00852 Probable molybdopterin binding domain SH02_RS15480 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH02_RS15515 SM00849 Metallo-beta-lactamase superfamily SH02_RS15525 SM00327 von Willebrand factor (vWF) type A domain SH02_RS15590 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SH02_RS15590 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH02_RS15595 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH02_RS15630 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH02_RS15695 SM00905 Dihydroneopterin aldolase SH02_RS15710 SM00382 ATPases associated with a variety of cellular activities SH02_RS15725 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS15730 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS15775 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH02_RS15795 SM00825 Beta-ketoacyl synthase SH02_RS15835 SM00463 Small MutS-related domain SH02_RS16030 SM00421 helix_turn_helix, Lux Regulon SH02_RS16030 SM00448 cheY-homologous receiver domain SH02_RS16035 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS16035 SM00073 Histidine Phosphotransfer domain SH02_RS16035 SM00387 Histidine kinase-like ATPases SH02_RS16035 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS16035 SM00448 cheY-homologous receiver domain SH02_RS16090 SM00387 Histidine kinase-like ATPases SH02_RS16095 SM00448 cheY-homologous receiver domain SH02_RS16095 SM00850 LytTr DNA-binding domain SH02_RS16100 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS16165 SM00052 Putative diguanylate phosphodiesterase SH02_RS16165 SM00267 diguanylate cyclase SH02_RS16255 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SH02_RS16255 SM00292 breast cancer carboxy-terminal domain SH02_RS16255 SM00532 Ligase N family SH02_RS16260 SM00771 ZipA, C-terminal domain (FtsZ-binding) SH02_RS16300 SM00773 Proposed nucleic acid binding domain SH02_RS16310 SM00382 ATPases associated with a variety of cellular activities SH02_RS16330 SM00822 SH02_RS16330 SH02_RS16375 SM00646 SH02_RS16375 SH02_RS16385 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS16390 SM00877 SH02_RS16390 SH02_RS16395 SM00877 SH02_RS16395 SH02_RS16440 SM00877 SH02_RS16440 SH02_RS16465 SM00877 SH02_RS16465 SH02_RS16470 SM00919 Malic enzyme, NAD binding domain SH02_RS16470 SM01274 SH02_RS16470 SH02_RS16480 SM00861 Transketolase, pyrimidine binding domain SH02_RS16500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS16500 SM00387 Histidine kinase-like ATPases SH02_RS16560 SM01130 SH02_RS16560 SH02_RS16625 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH02_RS16625 SM00382 ATPases associated with a variety of cellular activities SH02_RS16685 SM00052 Putative diguanylate phosphodiesterase SH02_RS16685 SM00267 diguanylate cyclase SH02_RS16715 SM00116 Domain in cystathionine beta-synthase and other proteins. SH02_RS16715 SM01240 SH02_RS16715 SH02_RS16735 SM00564 beta-propeller repeat SH02_RS16755 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS16765 SM00562 SH02_RS16765 SH02_RS16775 SM01359 SH02_RS16775 SH02_RS16775 SM01360 SH02_RS16775 SH02_RS16780 SM00450 Rhodanese Homology Domain SH02_RS16810 SM00271 DnaJ molecular chaperone homology domain SH02_RS16900 SM00829 Enoylreductase SH02_RS16910 SM00382 ATPases associated with a variety of cellular activities SH02_RS16920 SM00028 Tetratricopeptide repeats SH02_RS16940 SM00938 Nitrogen regulatory protein P-II SH02_RS16945 SM00382 ATPases associated with a variety of cellular activities SH02_RS16945 SM00448 cheY-homologous receiver domain SH02_RS16955 SM00387 Histidine kinase-like ATPases SH02_RS16955 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS16960 SM01211 SH02_RS16960 SH02_RS16965 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS17025 SM00358 Double-stranded RNA binding motif SH02_RS17025 SM00535 Ribonuclease III family SH02_RS17075 SM00487 DEAD-like helicases superfamily SH02_RS17075 SM00490 helicase superfamily c-terminal domain SH02_RS17100 SM00986 Uracil DNA glycosylase superfamily SH02_RS17100 SM00987 UreE urease accessory protein, C-terminal domain SH02_RS17105 SM00967 RNA 2'-O ribose methyltransferase substrate binding SH02_RS17120 SM01144 SH02_RS17120 SH02_RS17125 SM00881 CoA binding domain SH02_RS17130 SM00155 Phospholipase D. Active site motifs. SH02_RS17170 SM00382 ATPases associated with a variety of cellular activities SH02_RS17170 SM01086 C-terminal, D2-small domain, of ClpB protein SH02_RS17180 SM00363 S4 RNA-binding domain SH02_RS17200 SM00830 Chorismate mutase type II SH02_RS17205 SM00830 Chorismate mutase type II SH02_RS17225 SM00267 diguanylate cyclase SH02_RS17255 SM00382 ATPases associated with a variety of cellular activities SH02_RS17255 SM00962 SRP54-type protein, GTPase domain SH02_RS17255 SM00963 SRP54-type protein, helical bundle domain SH02_RS17265 SM01091 Transporter associated domain SH02_RS17335 SM00487 DEAD-like helicases superfamily SH02_RS17335 SM00490 helicase superfamily c-terminal domain SH02_RS17500 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS17500 SM00895 SH02_RS17500 SH02_RS17505 SM00257 Lysin motif SH02_RS17505 SM00749 bacterial OsmY and nodulation domain SH02_RS17515 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH02_RS17520 SM00450 Rhodanese Homology Domain SH02_RS17525 SM00528 Domain in histone-like proteins of HNS family SH02_RS17565 SM00382 ATPases associated with a variety of cellular activities SH02_RS17595 SM00347 helix_turn_helix multiple antibiotic resistance protein SH02_RS17665 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SH02_RS17690 SM01059 Chloramphenicol acetyltransferase SH02_RS17730 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS17730 SM01134 SH02_RS17730 SH02_RS17740 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH02_RS17740 SM00382 ATPases associated with a variety of cellular activities SH02_RS17745 SM00849 Metallo-beta-lactamase superfamily SH02_RS17765 SM00354 helix_turn _helix lactose operon repressor SH02_RS17855 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH02_RS17855 SM00382 ATPases associated with a variety of cellular activities SH02_RS17865 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SH02_RS17865 SM00534 ATPase domain of DNA mismatch repair MUTS family SH02_RS17875 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS17875 SM01134 SH02_RS17875 SH02_RS17890 SM01007 Class II Aldolase and Adducin N-terminal domain SH02_RS17910 SM00257 Lysin motif SH02_RS17980 SM01101 SH02_RS17980 SH02_RS18005 SM00487 DEAD-like helicases superfamily SH02_RS18005 SM00490 helicase superfamily c-terminal domain SH02_RS18050 SM00893 Electron transfer flavoprotein domain SH02_RS18095 SM01192 SH02_RS18095 SH02_RS18095 SM01193 SH02_RS18095 SH02_RS18115 SM00966 SpoVT / AbrB like domain SH02_RS18120 SM00954 Region found in RelA / SpoT proteins SH02_RS18130 SM00073 Histidine Phosphotransfer domain SH02_RS18130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS18130 SM00387 Histidine kinase-like ATPases SH02_RS18130 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS18130 SM00448 cheY-homologous receiver domain SH02_RS18135 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH02_RS18140 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH02_RS18195 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SH02_RS18195 SM00475 5'-3' exonuclease SH02_RS18205 SM01007 Class II Aldolase and Adducin N-terminal domain SH02_RS18230 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS18230 SM01134 SH02_RS18230 SH02_RS18270 SM00925 MltA specific insert domain SH02_RS18290 SM00646 SH02_RS18290 SH02_RS18350 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SH02_RS18370 SM00927 DNA mismatch repair enzyme MutH SH02_RS18395 SM00563 Phosphate acyltransferases SH02_RS18400 SM00354 helix_turn _helix lactose operon repressor SH02_RS18450 SM00862 Transcriptional regulatory protein, C terminal SH02_RS18475 SM00028 Tetratricopeptide repeats SH02_RS18475 SM00862 Transcriptional regulatory protein, C terminal SH02_RS18490 SM00421 helix_turn_helix, Lux Regulon SH02_RS18540 SM00257 Lysin motif SH02_RS18545 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH02_RS18550 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH02_RS18560 SM00091 PAS domain SH02_RS18560 SM00382 ATPases associated with a variety of cellular activities SH02_RS18615 SM01092 CO dehydrogenase flavoprotein C-terminal domain SH02_RS18620 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH02_RS18675 SM00937 SH02_RS18675 SH02_RS18720 SM01022 SH02_RS18720 SH02_RS18760 SM01011 Aminopeptidase P, N-terminal domain SH02_RS18850 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH02_RS18885 SM00861 Transketolase, pyrimidine binding domain SH02_RS18930 SM00731 SprT homologues. SH02_RS18955 SM00732 Likely ribonuclease with RNase H fold. SH02_RS18960 SM00382 ATPases associated with a variety of cellular activities SH02_RS18975 SM01152 SH02_RS18975 SH02_RS18985 SM00729 Elongator protein 3, MiaB family, Radical SAM SH02_RS18995 SM00870 SH02_RS18995 SH02_RS19020 SM00478 endonuclease III SH02_RS19020 SM00525 SH02_RS19020 SH02_RS19080 SM01276 SH02_RS19080 SH02_RS19120 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS19120 SM00895 SH02_RS19120 SH02_RS19265 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS19295 SM00729 Elongator protein 3, MiaB family, Radical SAM SH02_RS19305 SM00563 Phosphate acyltransferases SH02_RS19310 SM00434 DNA Topoisomerase IV SH02_RS19320 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS19330 SM00871 Bacterial transcription activator, effector binding domain SH02_RS19340 SM00448 cheY-homologous receiver domain SH02_RS19340 SM00862 Transcriptional regulatory protein, C terminal SH02_RS19345 SM00387 Histidine kinase-like ATPases SH02_RS19345 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS19365 SM00387 Histidine kinase-like ATPases SH02_RS19365 SM00433 TopoisomeraseII SH02_RS19475 SM00244 prohibitin homologues SH02_RS19500 SM01118 SH02_RS19500 SH02_RS19510 SM00287 Bacterial SH3 domain homologues SH02_RS19525 SM00905 Dihydroneopterin aldolase SH02_RS19530 SM01207 SH02_RS19530 SH02_RS19565 SM00400 zinc finger SH02_RS19565 SM00493 SH02_RS19565 SH02_RS19565 SM00766 DNA primase DnaG DnaB-binding SH02_RS19595 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SH02_RS19595 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SH02_RS19610 SM00354 helix_turn _helix lactose operon repressor SH02_RS19615 SM01038 Beta galactosidase small chain SH02_RS19645 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS19695 SM00858 SH02_RS19695 SH02_RS19710 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS19710 SM00895 SH02_RS19710 SH02_RS19870 SM00858 SH02_RS19870 SH02_RS19885 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS19885 SM01134 SH02_RS19885 SH02_RS19980 SM00749 bacterial OsmY and nodulation domain SH02_RS19990 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH02_RS20005 SM00465 GIY-YIG type nucleases (URI domain) SH02_RS20045 SM00487 DEAD-like helicases superfamily SH02_RS20045 SM00490 helicase superfamily c-terminal domain SH02_RS20050 SM00028 Tetratricopeptide repeats SH02_RS20055 SM00316 Ribosomal protein S1-like RNA-binding domain SH02_RS20055 SM00322 K homology RNA-binding domain SH02_RS20060 SM01387 SH02_RS20060 SH02_RS20080 SM00316 Ribosomal protein S1-like RNA-binding domain SH02_RS20125 SM00382 ATPases associated with a variety of cellular activities SH02_RS20135 SM01103 SH02_RS20135 SH02_RS20210 SM00382 ATPases associated with a variety of cellular activities SH02_RS20240 SM00382 ATPases associated with a variety of cellular activities SH02_RS20315 SM01130 SH02_RS20315 SH02_RS20320 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS20320 SM00895 SH02_RS20320 SH02_RS20360 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH02_RS20365 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SH02_RS20420 SM00316 Ribosomal protein S1-like RNA-binding domain SH02_RS20450 SM00052 Putative diguanylate phosphodiesterase SH02_RS20450 SM00267 diguanylate cyclase SH02_RS20455 SM00829 Enoylreductase SH02_RS20480 SM00878 Biotin carboxylase C-terminal domain SH02_RS20545 SM00062 Bacterial periplasmic substrate-binding proteins SH02_RS20560 SM00382 ATPases associated with a variety of cellular activities SH02_RS20665 SM00422 helix_turn_helix, mercury resistance SH02_RS20680 SM00662 RNA polymerases D SH02_RS20685 SM00363 S4 RNA-binding domain SH02_RS20685 SM01390 SH02_RS20685 SH02_RS20750 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SH02_RS20755 SM01374 SH02_RS20755 SH02_RS20775 SM00322 K homology RNA-binding domain SH02_RS20790 SM01382 SH02_RS20790 SH02_RS20790 SM01383 SH02_RS20790 SH02_RS20810 SM01403 SH02_RS20810 SH02_RS20835 SM00382 ATPases associated with a variety of cellular activities SH02_RS20895 SM00495 Chitin-binding domain type 3 SH02_RS20905 SM00838 Elongation factor G C-terminus SH02_RS20905 SM00889 Elongation factor G, domain IV SH02_RS20970 SM00382 ATPases associated with a variety of cellular activities SH02_RS21000 SM00100 Cyclic nucleotide-monophosphate binding domain SH02_RS21000 SM00419 helix_turn_helix, cAMP Regulatory protein SH02_RS21085 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS21085 SM00866 SH02_RS21085 SH02_RS21165 SM00965 Secretin and TonB N terminus short domain SH02_RS21210 SM00363 S4 RNA-binding domain SH02_RS21235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SH02_RS21235 SM00387 Histidine kinase-like ATPases SH02_RS21235 SM00388 His Kinase A (phosphoacceptor) domain SH02_RS21240 SM00448 cheY-homologous receiver domain SH02_RS21240 SM00862 Transcriptional regulatory protein, C terminal SH02_RS21250 SM00316 Ribosomal protein S1-like RNA-binding domain SH02_RS21250 SM00732 Likely ribonuclease with RNase H fold. SH02_RS21255 SM00899 SH02_RS21255 SH02_RS21305 SM00421 helix_turn_helix, Lux Regulon SH02_RS21320 SM00382 ATPases associated with a variety of cellular activities SH02_RS21325 SM00420 helix_turn_helix, Deoxyribose operon repressor SH02_RS21325 SM01134 SH02_RS21325 SH02_RS21335 SM00450 Rhodanese Homology Domain SH02_RS21365 SM00642 Alpha-amylase domain SH02_RS21370 SM00642 Alpha-amylase domain SH02_RS21375 SM00859 Semialdehyde dehydrogenase, NAD binding domain SH02_RS21395 SM00354 helix_turn _helix lactose operon repressor SH02_RS21450 SM00382 ATPases associated with a variety of cellular activities SH02_RS21475 SM00382 ATPases associated with a variety of cellular activities SH02_RS21480 SM00382 ATPases associated with a variety of cellular activities SH02_RS21525 SM00382 ATPases associated with a variety of cellular activities SH02_RS21530 SM00382 ATPases associated with a variety of cellular activities SH02_RS21530 SM00962 SRP54-type protein, GTPase domain SH02_RS21530 SM00963 SRP54-type protein, helical bundle domain SH02_RS21605 SM00382 ATPases associated with a variety of cellular activities SH02_RS21610 SM00382 ATPases associated with a variety of cellular activities SH02_RS21645 SM00382 ATPases associated with a variety of cellular activities SH02_RS21735 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SH02_RS21770 SM00421 helix_turn_helix, Lux Regulon SH02_RS21815 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS21820 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS21830 SM01235 SH02_RS21830 SH02_RS21840 SM00421 helix_turn_helix, Lux Regulon SH02_RS21865 SM00052 Putative diguanylate phosphodiesterase SH02_RS21890 SM00052 Putative diguanylate phosphodiesterase SH02_RS21890 SM00267 diguanylate cyclase SH02_RS21895 SM00028 Tetratricopeptide repeats SH02_RS21960 SM00382 ATPases associated with a variety of cellular activities SH02_RS21965 SM00382 ATPases associated with a variety of cellular activities SH02_RS22045 SM00530 Helix-turn-helix XRE-family like proteins SH02_RS22050 SM00357 Cold shock protein domain SH02_RS22125 SM00382 ATPases associated with a variety of cellular activities SH02_RS22135 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS22140 SM00047 Lysozyme subfamily 2 SH02_RS22145 SM00642 Alpha-amylase domain SH02_RS22165 SM00346 helix_turn_helix isocitrate lyase regulation SH02_RS22200 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SH02_RS22210 SM01007 Class II Aldolase and Adducin N-terminal domain SH02_RS22330 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS22330 SM00895 SH02_RS22330 SH02_RS22345 SM00971 Serine acetyltransferase, N-terminal SH02_RS22365 SM00450 Rhodanese Homology Domain SH02_RS22390 SM00829 Enoylreductase SH02_RS22485 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SH02_RS22485 SM01232 SH02_RS22485 SH02_RS22545 SM00532 Ligase N family SH02_RS22550 SM00072 Guanylate kinase homologues. SH02_RS22555 SM01409 SH02_RS22555 SH02_RS22560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SH02_RS22560 SM00954 Region found in RelA / SpoT proteins SH02_RS22570 SM00487 DEAD-like helicases superfamily SH02_RS22570 SM00490 helicase superfamily c-terminal domain SH02_RS22665 SM00387 Histidine kinase-like ATPases SH02_RS22670 SM00421 helix_turn_helix, Lux Regulon SH02_RS22670 SM00448 cheY-homologous receiver domain SH02_RS22740 SM00342 helix_turn_helix, arabinose operon control protein SH02_RS22760 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS22760 SM00866 SH02_RS22760 SH02_RS22800 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SH02_RS22815 SM00345 helix_turn_helix gluconate operon transcriptional repressor SH02_RS22815 SM00895 SH02_RS22815 SH02_RS22840 SM00387 Histidine kinase-like ATPases SH02_RS22840 SM00433 TopoisomeraseII SH02_RS22850 SM00480 DNA polymerase III beta subunit SH02_RS22855 SM00382 ATPases associated with a variety of cellular activities SH02_RS22855 SM00760 Bacterial dnaA protein helix-turn-helix domain