SH02_RS00015 NONE
SH02_RS00020    3019 ..    3036 + -12.7  -5.83211   TTTCGCTAAAATAAG             GGCGGTC AGTT GACCGCC              TTTTTTCTTTTCGTA 100 51
        trmE    4472 ..    4507 + -15.6  -3.53712   TAAGTAACCGCGCTT    ACGAAGCCGCATTCTGA CTG TCAGA-TGCGGCTTCGC    TTCATTGTTACCACT 100 34
SH02_RS00030    4818 ..    4835 +  -2.1  -4.55209   CAGAGCCAAACCGAT             TAGATTCA ATG TGA-TCTA             TTTGTTTGCTATATC  60 63
        tnaA    6428 ..    6454 +  -8.1  -3.06492   TTAATTAATACTACA         GAGTGGCTA TAAGGATGT TAGCCACTC         TCTTACCCTACATCC  62 37
SH02_RS00040    7764 ..    7786 + -13.5  -3.12351   GGCTAAATCCTTCAA           GAAGCCAGC CATTC GCTGGCTTC           TTGCCTCTCAGGAAA 100 35
SH02_RS00045 NONE
SH02_RS00050   10101 ..   10112 +    -3  -3.44124   CTGTCCATCATTCCA                GTAA ATGA TTAC                 TCTTGTATTCATAAT  49 131
SH02_RS00055 NONE
SH02_RS00060   11498 ..   11522 + -12.2  -4.57837   GATCTAAATAAAAAA         CCCGCCA-GCA ATCA TGCATGGCGGG          TTTTTAACGCGCTAT 100 34
SH02_RS00070 NONE
SH02_RS00075   14249 ..   14259 +    -4  -3.62096   CTTTAAGTTAAGCGG                 GATA CTT TATC                 TTTGGGCTACTCAAA  54 30
SH02_RS00080   14901 ..   14928 +  -7.7   -4.2204   TAAATAATGAGAACA        GGCCGGA-GCGT AATTC ACACATCCGGCC        TTATTTCTTAAGCTT  76 46
SH02_RS00215   44912 ..   44926 +  -4.9  -3.25304   CACACAGACAATAAA               CGGCC CGCGC GGCTG               TTCATCGTAATCTTT  49 519
        trkD   49463 ..   49487 +  -9.3  -5.50723   AAATCTAACGCCAGA          CGCCTCCTT TCTTCAT AAGGGGGCG          TTTTTGTTTTCATGG 100 33
SH02_RS00235   50023 ..   50057 +  -5.6  -3.37612   GAATATCATTCTCTG     TGCTGGCGTGACGTTC TGA GGCCGTCATGGAAGCA     TTACTTCAGCTTAAA  57 7
SH02_RS00240 NONE
        rbsC NONE
SH02_RS00250   53522 ..   53544 + -13.4  -3.22906   AGAAAAGCAGGGCAC           GCGCCACCCT AAC ACGGTGGCGC           ATTTTATGGACATCC 100 108
SH02_RS00255 NONE
SH02_RS00260   55605 ..   55616 +  -2.2  -2.57757   TATAGTGGAATTGTT                CGAC AGTC GTTG                 TGCCTTCCATTCCTT  38 140
SH02_RS00275   59641 ..   59654 +  -2.3  -2.72471   AAGAAGCGTTCTTTG               CAGTG CTCA CACAG                ATTGTCTGATAGGAA  40 34
SH02_RS00280   59817 ..   59852 +    -7  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTCATC TTCG GGTGATGTTTGAGATA     TTTGCTCTTTAAAAA  69 61
SH02_RS00285   62954 ..   62967 +  -2.4  -2.78679   AGAACGCAGAAGCGG               TCTG ATGAAA CAGA                ATTTGCCTGGCGGCC  41 89
SH02_RS00290   63107 ..   63122 +  -6.1  -2.82742   AAATTAAGCAGTAAG              CCGGT CATAAA ACCGG               TGGTTGTAAAAGAAT  55 44
SH02_RS00295   63215 ..   63234 +  -2.8  -2.79684   GAGTCCCGTCCGTTC            CGCCACC CTAATTA GG-GGCG            TAGTTCAATTGGTAG  42 21
SH02_RS00300   63311 ..   63330 + -10.8  -6.02914   CCCTGCCAGAAATCA            TCCTTAGC GAAA GCTAAGGA             TTTTTTTTATCTGAA 100 33
SH02_RS00310   64702 ..   64714 +  -6.9  -5.72616   GACGATTAATAAAAA                GGGCG AAA TGCCC                TTTTTTTATGTCAGT 100 32
SH02_RS00320   66716 ..   66739 + -13.8  -5.81032   CTTAACGAACTAAGA          CCCCCGCACC GAAA GGTCCGGGGG           TTTTTTTTGACCTTA 100 50
SH02_RS00325 NONE
        ilvM NONE
SH02_RS00335   69695 ..   69716 + -11.6  -3.53012   AATAAATACAAAAAA           TGGGACGG CACGCA CCGTCCCA            TTTACGAGACAGACA  89 36
SH02_RS00340 NONE
SH02_RS00345   73239 ..   73255 +  -9.4  -4.82901   AGAATGCCTCAATTA              GCGGCT CATGT AGCCGC              TTTTTCTGCGCACAC  95 118
SH02_RS00355   75772 ..   75800 + -16.1  -3.24825   AGAGGGAGAAAACAC        TCAAGGCCTTCTC CTG GAGAAGGCCTTGC        TATTAGTTGCGGTAC 100 81
SH02_RS00370   79033 ..   79059 +  -8.8  -3.73224   AATGCACTTCCAGCG        GCCAGTGGACA TAGCTC TG-CCACTGGC         TTTCCTGAGCAATAA  75 89
        trxA   82338 ..   82366 +  -4.5  -3.93038   GGTCAGTTGAAAGAG        TTCCTCGACGCTA ACC TGGCGTAAGGGAA        TTTCATGTTCGGGTG  61 2
SH02_RS00390 NONE
         rho NONE
SH02_RS00400 NONE
SH02_RS00405 NONE
SH02_RS00410   86359 ..   86384 + -18.3  -3.61517   AATAGCAACACTGCT         GCGGTGAGCGC AAAG GCGCTCGCCGC          TTATTCGAAGAGAAT 100 36
SH02_RS00415 NONE
        wecC NONE
SH02_RS00425   89847 ..   89857 +  -3.2  -3.08032   AGGGCGAGCGTTTAG                 GTCT GAA AGGC                 TAATTTTCAGCGGAG  46 12
SH02_RS00430 NONE
SH02_RS00435 NONE
SH02_RS00440 NONE
SH02_RS00445 NONE
SH02_RS00450 NONE
SH02_RS00455 NONE
SH02_RS00460   96985 ..   97010 + -13.3  -3.18764   TTCCTCTCTTTGTAA         AGCGACGGAGT GGTC ACTCCGTCGCC          TGTCTGCTTTTTTAT 100 43
SH02_RS00465 NONE
SH02_RS00470   98709 ..   98722 +  -2.3  -3.72695   CTCAGGTTCGAATCC               TGTCG GGCG CGCCA                TTTAGTCCCGGCGCT  49 12
SH02_RS00475 NONE
SH02_RS00480 NONE
SH02_RS00485   99091 ..   99106 + -11.8   -5.8901   CCGACCAATTTTGAA              CCCCGC TTCG GCGGGG               TTTTTTGTTTTCTGT 100 34
SH02_RS00490  100639 ..  100684 +  -7.7  -3.74077   TAGTCAGATTTAATC TGCGCGCGTG-GTGGATATTTT TTC AGGATCTCCATATACGCGTGCA TTTCGGTCTGTAGCG  72 200
        cyaA  109972 ..  110007 +  -3.2  -3.01924   AATATTTTTCGTGAT    GAACGTGCCGGA-AAGC GAG GCTTATCCGGCATGCAA    TCTTAGCGGAAACTG  44 27
SH02_RS00530 NONE
        dapF NONE
SH02_RS00540 NONE
        xerC NONE
SH02_RS00550  114198 ..  114231 +  -8.1  -2.93708   TATATATACCCAGCT     TTTTGGCGGAGG-GCG TTG CGCTTCTCCGCCCAAC     CTATTTTTACGCGGC  62 53
        uvrD  116430 ..  116442 +  -9.1   -3.9392   AACGTTGCCGGATGC                GGTGC TGC GCACC                TTATTTGGCCTAAAA  80 39
SH02_RS00565  117539 ..  117576 +  -6.4  -3.29144   GTCATCCAGGATCAA   CTCCTAAGGCTATC CCTTTTTGCT GATAGCCTTAGCGG    TTGTCAGCGACCTCA  59 111
SH02_RS00570  118659 ..  118683 + -15.1  -3.38991   GTAAAAAACGAGAGC          GGTGGCTTAGT CTG GCTAAGCCACC          TGTTATTCAAAGGCT 100 37
SH02_RS00595  122086 ..  122107 + -12.3  -5.27335   TTGCAGTTTCTCGCG           CAGGCGCTG AAAA TAGCGCCTG            TTTTTATTTCAGGCA 100 109
SH02_RS00600 NONE
SH02_RS00605  124669 ..  124705 +  -8.8  -4.58395   GACGCGTCTTCAGAG   TAA-GTCGGATAAGGCG TTTA CGCCGCATCCGACATTA    TTTTTCACGCATGCC 100 46
SH02_RS00615  126445 ..  126458 +  -2.3  -3.94868   CTCACCCAGCGGAAA               CCGCT CTAC AGAGG                TTTAAATTTCTTATG  53 7
SH02_RS00620  127307 ..  127353 +  -2.3  -2.86271   TGTCAACCTGATACT TCGCTACAATGG-ATACCCGTT AATC AAAGAGTTTTCCATTGTGGCGC TACTTATCATCACCA  41 61
SH02_RS00625  128526 ..  128539 +  -6.7  -3.08706   GATAAATTAATAGCG               TCTCG CTGG CGAGA                TCTTCCGGTGTAATT  59 305
SH02_RS00635  131592 ..  131616 + -14.3   -4.5442   CGGGGGTAAAATCCA          AACCGGGTGGT AAT ACCACCCGGTC          TTTTCTCATTACAGC 100 32
SH02_RS00645  133483 ..  133499 +  -9.4  -4.98672   CTTCTCCTGTCTGAA              GGCCGA CGCGT TCGGCC              TTTTGTATTTTTGCG 100 45
SH02_RS00650  135084 ..  135101 +  -2.7  -3.68256   CATCGACGCCCAATC             TGTTACA CTTC TGGAACA              ATTTTTTGATGAGCA  50 78
        ubiE NONE
SH02_RS00660 NONE
        ubiB  138159 ..  138180 +  -2.9  -4.51743   CATCGCTCAAGGCGG           GCCGTGTAA CGTA TAATGCGGC            TTTGTTTAATCATCA  61 47
        tatA NONE
SH02_RS00675 NONE
SH02_RS00680  139787 ..  139808 + -15.9  -2.63596   ACTGAAGAATAAATT           CAACCGCCC GTCA GGGCGGTTG            TCATATGGAGTACAG 100 29
SH02_RS00685  140873 ..  140883 +  -8.2  -3.23692   CGAAGTGGCTGACAC                 CGCG GGT CGCG                 TTGATAGTCGTGGTA  63 291
SH02_RS00695  142744 ..  142758 +  -2.7  -4.67651   TTTAACAACGGTAAA               AGCGC CTGAT GCGCG               TTTGTTTTGCCCTAT  64 17
         fre  143597 ..  143615 +   -11   -3.4252   TGGCAAACCATGCCC             GATGCGAC GCT GTCGCGTC             TTATCGTGCCTACAA  83 123
SH02_RS00715 NONE
SH02_RS00720 NONE
SH02_RS00725 NONE
        hemG  151534 ..  151552 +  -5.8   -3.4072   GAACAACGGCAAACA             CGCCGCCG GGT CAGCGGGG             TTCTCCTGAGAACTC  59 135
SH02_RS00735 NONE
SH02_RS00740  153491 ..  153503 +  -6.3  -3.57309   CTCAGGCCTACCAAA                TTTGC ACG GCAAA                TTTGAAGAGGTTTTA  63 28
SH02_RS00745  153633 ..  153666 +  -6.7  -4.49756   ATTAAATAAAAAATA     CTTCAGAGTGTACCT GCAA AGGTTCACTGCGAAG      TTTTGCTCTTTAAAA  76 52
SH02_RS00750  156699 ..  156709 +  -4.6  -4.11484   GGCTTAACCTTACAA                 CGCC GAA GGTG                 TTTTGGCGGATTGAG  63 12
SH02_RS00755  156908 ..  156957 + -24.7  -4.09117   GGAACTGCCAGGCAT CAAATAAAACGAAAGGCTCAGTC GGAA GACTGGGCCTTTCGTTTTATCTG TTGTTTGTCGGTGAA 100 28
SH02_RS00770  158659 ..  158669 +    -4  -4.12188   AATGATATCCTTCGT                 CATT CGT AATG                 TTTTCCGGATGATGG  61 75
SH02_RS00775 NONE
SH02_RS00780  160336 ..  160355 + -13.6  -6.01369   TGTAAATTACATAAA            GCCCGTGA ATAT TCACGGGC             TTTTTTTATTATTTA 100 46
SH02_RS00785  161934 ..  161944 +    -4  -3.80174   CTCATTCAGAGGCGA                 GTAA AAC TTAC                 TTATTCTGACGCTGT  57 59
SH02_RS00800  166246 ..  166271 + -19.1   -5.4505   GCTGAATATTTTAGC         CGCCCCAGTCA GTAA TGACTGGGGCG          TTTTTTATTGGGCGA 100 248
SH02_RS00810  168141 ..  168152 +  -3.6  -3.44051   AACGGATTGCCGCCG                TGGG CCTT CCCG                 TTCTGCTGATAACCC  51 39
SH02_RS00815  169814 ..  169869 +   -17  -3.21924   TTGTAGGCCGGATAA GGCGTTTA-CGCCGCATCAGGCATC TGAGCAT GATGCCTGATGCGGCGCTGGTCGCG TCTTATCAGGCCTAC 100 150
SH02_RS00845  176525 ..  176542 + -11.3     -6.13   TTTAGTCATAAAAAA             CCTGCCA GCGA TGGCAGG              TTTTTTTTTGCCTGT 100 49
SH02_RS00850 NONE
SH02_RS00855 NONE
SH02_RS00860  179834 ..  179865 +   -10  -2.75844   ACCGTATCAACCGTA      GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA       GTTTCACATCAGAAG  72 76
SH02_RS00905 NONE
SH02_RS00910 NONE
SH02_RS00915 NONE
SH02_RS00920 NONE
SH02_RS00925 NONE
SH02_RS00930  194718 ..  194737 +  -7.8  -2.74756   AGAGTAGCTGATGGA            GAGGGGCG GTGC TGCCTCTC             TCATTCAGGTCATTT  61 34
SH02_RS00935  195775 ..  195796 +  -4.5  -3.12351   TGTAAGGAGCATAAG           GAATGACAA AAAT TTTTCATTC            TTGAATATAAAAAAC  51 20
SH02_RS00940  196282 ..  196311 + -10.7  -3.30124   GCTGACAACGTGCGC       GTTGTTCATGCCG GATG CGGCGTGAACGCC        TTATCCGGCCTACAA  76 67
SH02_RS00975  203127 ..  203161 +  -9.4   -3.5782   AGCAATTAATTAAAA     TAAGTCCTGCGAAATA TAT TAAATTGCAGGACTTA     TTCATTTCGTGAATT  78 32
SH02_RS00980  204661 ..  204691 +    -6  -2.70946   TCACCTTCGCCTTCG       CGGGCGATGATGCG TTG TGCTTCATCGGCGG       TAATATGGTGTTGTG  51 358
SH02_RS01025  213929 ..  213942 +  -3.9  -3.59979   ACGTTTTTTACGTGG               TTTTC CGTC GAAAA                TTTAAGGTAAGAACC  53 7
SH02_RS01030 NONE
SH02_RS01035  215838 ..  215848 +  -6.8  -2.66106   CTCAACACCGTTACC                 GGAC GGC GTCC                 TGCATTGTTCCACTC  52 98
SH02_RS01045  217759 ..  217777 + -12.4  -5.67063   AGCTTAAAAAATGAA             CCATCGCC AAC GGCGGTGG             TTTTTTTGTGATCAA 100 83
SH02_RS01055  218968 ..  218991 + -13.2  -3.94853   CCTTAATCCCCACAG          CCGGATGAAC TAAC GTTCGTCCGG           TTTGCTATTGAGTTC 100 49
SH02_RS01060  219837 ..  219848 +  -7.2   -3.4252   TCAAATGCCGGATGC                GGCG TAAA CGCC                 TTATCCTGCCTGCAA  66 95
        cpxP  222632 ..  222650 + -14.6   -5.9873   CACCATCCCTGTCTT             CCCCCACA TGC TGTGGGGG             TTTTTTTTATCCTCA 100 66
        fieF NONE
SH02_RS01085  224971 ..  224987 +  -9.4   -4.7497   TTGTCAGCAATATGA              GGCGGA TTTCT TCCGCC              TTTTTAATCCCTCAA 100 211
SH02_RS01090  226117 ..  226139 +  -6.9  -5.72622   AGGATAATTATCAAA           CCCGGTGGT TTCTC GCGACCGGG           TTTTTTATTTGTCAC 100 48
SH02_RS01095  227308 ..  227321 +  -2.3  -4.18197   CGCACCTTCGAATGC               CGCAG CACC CTGAG                TTTTCAGTACCGCGT  58 377
SH02_RS01110  229054 ..  229101 +   -16  -2.84566   CTCTTACTGCTATTT TTTTCCGGG-ATTGTTATTTCCA CGA TGCAAATGACAATACCCGGAAAA TCCTTCTGAACTCTT 100 53
SH02_RS01115 NONE
SH02_RS01120  230023 ..  230063 + -10.3  -3.35224   GCTCCGCTGTCATAT  GGCCCGGTCGGCGACGTAA ATG TTTCGTCATCTGCCGGGTC  TCTTTCAGCAACTGT  72 56
SH02_RS01145  235093 ..  235108 + -10.4   -4.3953   GTAACGCAGAAAAAA              GGCACC TTGC GGTGCC               TTTCTTATCATTCAA 100 87
        rpmE  243516 ..  243529 +  -9.5  -5.64274   GGATTTCCGAAAAAA               GCGCC GCAC GGCGC                TTTTTTTGTGCCTGA 100 45
SH02_RS01200 NONE
        metL  248687 ..  248709 +   -12  -5.42605   AGTTTATATTTGCAG           TCCGGTTTGC TTT GCATACCGGA           TTTTCTTTTTCTTAC 100 176
        metF  249850 ..  249888 + -10.4  -2.60392   GCTGCCTCGAAATGA   GGGCGGGAAAATAAGGTT ATC AGCCTTGTTTTCTCCCTC   ATTACTTGAAGGATA  74 100
SH02_RS01220  252293 ..  252326 + -19.7   -3.9122   GCTGTAATCTGACCC     CGTTCAGCGGCTGCT TGCT GGCAGTCGCTGAACG      TTCTTTACCAGCGTA 100 34
SH02_RS01225  253560 ..  253594 +  -3.5  -3.80083   AGGTTTCCAGATTAG    GCACCC-GACGGTGAT CGAT GTTGCTGTCCGGGCGC     TTTAACTTCCATTTT  56 303
SH02_RS01255 NONE
SH02_RS01260  260222 ..  260239 + -10.5  -3.27525   CGCTTAAGTTCTTCT             CCCGCTC GCAA GGGCGGG              TTCGCTTTCCCACAG  78 34
        pflD NONE
SH02_RS01270 NONE
SH02_RS01275  264239 ..  264263 +  -6.3  -4.52347   TATGCGTGGGCCGCG          TCGGGCGACGT GTT GCTTCGCCAGA          TTTTGATATTGTTTG  74 516
SH02_RS01305 NONE
SH02_RS01310  273067 ..  273090 +  -5.2  -3.28001   AGCTTAAGTTTTGTT          GGCCGG-AGGC GCA GCTTTCCGGCA          TTGAATTTCAAAATA  55 34
SH02_RS01315  274517 ..  274535 +  -9.5  -5.24129   TATGTATAAATTTGA             GCCTGGC TTATC GCCGGGC             TTTTTTATGGCAAAA 100 50
SH02_RS01320  275845 ..  275867 +  -5.7  -4.11216   AATACCCAGAATCTC           TTTTGTTTC CCGAT GGAACAAAA           TTTTCAGCGTGCCCA  65 194
SH02_RS01330 NONE
SH02_RS01335  278405 ..  278436 + -11.6  -4.41494   TGCTGAGTAATCGGT      ATTATGCCGGATGC TGGC GCATCCGGCATGGG       TTTTACTTCGCGGTC 100 31
        btuB  281760 ..  281795 +   -14  -3.41125   CCTTCTGAACCACGT    CCCACCG-TGCTGGTGT TTG ACTCCGGCGTCGGTGGG    TTGTCGGTCTATGAC 100 33
SH02_RS01350  282660 ..  282678 +  -5.8   -3.4072   GAACAACGGCAAACA             CGCCGCCG GGT CAGCGGGG             TTCTCCTGAGAACTC  59 131
SH02_RS01355  284490 ..  284503 +  -2.3  -2.72471   AAGAAGCGTTCTTTG               CAGTG CTCA CACAG                ATTGTCTGATAGAAA  40 34
SH02_RS01360  284666 ..  284701 +    -7  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTCATC TTCG GGTGATGTTTGAGATA     TTTGCTCTTTAAAAA  69 61
SH02_RS01365  287801 ..  287814 +  -2.4  -2.78679   AGAACGCAGAAGCGG               TCTG ATAAAA CAGA                ATTTGCCTGGCGGCA  41 84
SH02_RS01370  287938 ..  287987 + -24.7  -4.09117   GGAACTGCCAGGCAT CAAATAAAACGAAAGGCTCAGTC GAAA GACTGGGCCTTTCGTTTTATCTG TTGTTTGTCGGTGAA 100 28
        murB NONE
SH02_RS01380  290251 ..  290265 +    -5   -2.6472   GAGTATTCGCTCCCC               TGCAAA TTA TTTGCG               TAGTCTGACCTCTTC  48 48
SH02_RS01395 NONE
SH02_RS01400  291793 ..  291813 +  -2.5  -3.05816   GCTTACCGGCTCGAA            TAAAGAGAG CTT CTCTCGATA            TTCAGTGCAGAATGA  43 81
SH02_RS01405  291935 ..  291945 +  -3.2  -2.56596   CCCGCTCCAAGATGT                 GCTG ATA TAGC                 TCAGTTGGTAGAGCG  42 32
SH02_RS01410  292061 ..  292075 +  -7.8  -2.57944   TTGCATTCAACAAGT               CGGGCA TGT TGCCTG               GTTGATGTGGTGATA  60 76
         tuf  293333 ..  293372 + -13.6  -3.72576   AACATTTGACGCAAT  GCGCACTAAAAGGGCATC ATTT GATGCCCTTTTTGCACGC   TTTCGTACCAGAACC 100 49
        secE NONE
        nusG  294504 ..  294542 + -13.3   -4.8543   GCGATTTAATCGTTG   CACAAGGCGTGAGATTG GAATA CAATTTCGCGCCTTTTG   TTTTTATGGGCCTTG 100 60
SH02_RS01430 NONE
SH02_RS01435  295773 ..  295809 +  -6.6  -2.87136   AAACTAATGCCTTTA   CGTGGGCGGTGATTTTG TCTA CAATCTTACC-CCCACG    TATAATGCTTAATGC  57 34
        rplJ  296667 ..  296680 +  -3.8  -4.07746   GCGATGCGAAAGAAG               CTGC TTAATC GCAG                TTATCTTTTTAACGC  60 18
        rplL  297146 ..  297171 + -17.7  -4.64766   AGAAATCAGGCTGAT         GGCTGGTGACT TTTT AGTCACCAGCC          TTTTTGCGCTGTAAG 100 65
        rpoB  301474 ..  301501 + -15.6  -2.65298   CGCTCAAACAGGTCA        CTGCTGTCGGGT TAAA ACCCGGCAGCGG         ATTGTGCTAACTCCG 100 45
SH02_RS01455  305781 ..  305794 +  -9.5  -5.60993   CAAATAACGTAAAAA               CCCGC TTCG GCGGG                TTTTTTTATGGGGGG 100 52
SH02_RS01460  306512 ..  306527 + -10.4  -3.53343   CTCAAAATAACAAAA              CCCACC TTAA GGTGGG               TTTCGCCAGAGAATT  80 31
        nudC NONE
        hemE  314956 ..  314967 +  -2.2  -2.63382   TCTGAACAGTATCAC                CGCT AAGG AGTG                 ATTATGGATCTCGCG  40 20
SH02_RS01510  315656 ..  315668 +  -4.8  -3.35597   AATTCAGGTAAACTG                CGGA TAATT TCCG                TATTTGAGAACTCAA  53 39
SH02_RS01515  316396 ..  316408 +  -4.1  -3.65351   GTGTATGCAGGAGAG                TGCTA TTC TGGCA                TTTCCGTCGCACTCG  54 146
SH02_RS01520 NONE
SH02_RS01525  317683 ..  317694 +  -5.8  -3.57263   TCACCAGTTGCTGTT                GCAG TGCG CTGC                 TTTGAGCGTAAAAGT  60 266
SH02_RS01535 NONE
SH02_RS01540  321138 ..  321158 +  -3.3  -4.05788   AGCGCGTTCATCCCA           CTCGGACG TTTTCT CGTCC-AG            TTTGCTTTCACAGGC  58 337
SH02_RS01565  325890 ..  325903 +  -2.3  -2.72471   AAGAAGCGTTCTTTG               CAGTG CTCA CACAG                ATTGTCTGATAGAAA  40 34
SH02_RS01570  326066 ..  326101 +    -7  -4.00532   AGTCACCTGCCTTAA    TATCTCAAAACTCATC TTCG GGTGATGTTTGAGATA     TTTGCTCTTTAAAAA  69 61
SH02_RS01575  329132 ..  329142 +  -4.6  -4.11484   GGCTTAACCTTACAA                 CGCC GAA GGTG                 TTTTGGCGGATTGAG  63 12
SH02_RS01580  329354 ..  329374 + -11.8   -5.1287   ATCAAATTAGAAAAA            CCCCGGTC CATAA GGCCGGGG            TTTTTTGCATATCAA 100 41
SH02_RS01585  330121 ..  330131 +  -2.4  -2.70932   ACATAAATCCAACCG                 GCTG ATC CCGC                 TCATTAACCGCGACC  39 348
SH02_RS01595  331436 ..  331451 + -10.4  -5.63517   CAGCACCTTACCTCA              GGCACC TTCG GGTGCC               TTTTTTATTTCCGAA 100 71
SH02_RS01600 NONE
SH02_RS01605  334674 ..  334687 +  -8.1   -3.4252   CACGATGCCTGATGC               GACGC TTGC GCGTC                TTATCATGCCTACAG  68 105
        aceK  336757 ..  336769 +  -6.3  -4.04318   GATAAACCGTCTCTA                CAACA TTT TGTTG                TTTATGCTGTATCGC  68 269
        metH  343721 ..  343751 + -10.4  -4.29106   CACTTTTCCTTACAA       CAAACAGGGCGCTC AAT GAGTGCCCTGTCTC       TTTATTAATATGAAA 100 54
SH02_RS01630  345606 ..  345628 +  -7.7  -3.17075   GGCACTATGAACAAG           ATGCCGGAT CATGC ATCCGGCAA           TTCACTTAAAAACGG  63 88
SH02_RS01640  347551 ..  347562 +  -2.2  -3.44848   TGGATTAGCGCCTGC                CG-CG CGT CGACG                TATTTGCTGACCAGC  47 169
         pgi  351616 ..  351662 + -14.3   -2.5294   TGTAGGCCGGATAAG GCGTTCACGCCGCATCCGGCA ACCGA TGCCTGATGCGACGCGGTCGC GTCTTATCAGGCCTA  93 53
SH02_RS01670  353175 ..  353196 + -11.7  -3.32343   TGAAGGGATTAACCA           TAACCACAC TCCG GTGTGGTTA            TTCTGCCCCTCTGGA  86 94
SH02_RS01675 NONE
SH02_RS01680 NONE
SH02_RS01685  356700 ..  356727 +  -8.5  -3.56142   CTAAGTCATGGGAAA        GGTGCCAGT TTTCGCACTC ACTGGCACC         TTCATTCTTAATGGC  71 37
SH02_RS01695  357138 ..  357158 +  -5.4  -2.90714   CGCCGCCAGGCGCGG            CTTATCCG GCCTA CGGGTAGG            TATATCCGGCTTTGG  52 6
SH02_RS01700  357740 ..  357750 +  -2.4  -4.58419   TGGACAGGAAGATTA                 CAGC GTA GCAG                 TTTGTTGTGTTTTCT  63 72
SH02_RS01730  364880 ..  364890 +  -6.8  -2.62184   ACAAAACACACAAAG                 CCTG TCA CAGG                 TGATGTGAAAAAAGA  56 48
        lamB  366339 ..  366386 + -12.2  -3.53811   GATGCGACGCTTGCG CGTCTTATCAGGCCTACA ACGGCTGTCAAA TGTAGGCCGGATAAGGCG TTTACGCCGCATCCG  91 95
SH02_RS01740  367465 ..  367484 + -11.4  -5.71983   GATTTTGCAACAACT            GGTGCGTC TCCT GGCGCACC             TTTTTTTATGCTTCC 100 58
SH02_RS01745 NONE
SH02_RS01750  369355 ..  369365 +  -3.2  -3.66156   GTTTTACCACTTCAT                 GCGA TTG TTGC                 GTTTTTGTTGCGTAT  51 139
        ubiC NONE
        ubiA  370859 ..  370876 + -11.3  -4.35604   TGATGATGTAAAAAA             GCCGGAT GATC ATCCGGC              TTTCTTCTGGGTTGC 100 38
SH02_RS01770  373969 ..  373990 +  -2.4  -4.33851   TTTTGGATAACCCTT           CCAGA-ATT CGATA AATCTCTGG           TTTATTGTGCAGTTT  58 31
SH02_RS01775  374695 ..  374718 +   -16  -4.94262   AACATATCTCTGAGA          CCGCGATGCC GCCT GGCGTCGCGG           TTTGTTTTTCATCTC 100 39
SH02_RS01780  376138 ..  376158 +  -2.6  -2.69964   CTACACTTAATCTCA            CGTTCA GAAGAAAAG TGAACG            TACTCTCATTCACAA  41 84
SH02_RS01785  376716 ..  376728 +  -9.1  -3.28791   GAGCACATAACTGTT                GGTGG ATT CCACC                TTATGCACAAAACCT  69 337
SH02_RS01795 NONE
SH02_RS01800  378306 ..  378327 +  -9.5   -5.4251   AGGCATTATATAAAA           GGACCCAAT ATTT ATTGGGTTC            TTTTTTCTCTATCAA 100 67
SH02_RS01805  379695 ..  379718 + -13.1  -4.43681   TAGTCAAATTCACCA          CGCCCTGCG CACCGT CGCGGGGCG           TTTTGCTGTTAAATC 100 56
        pspG  380175 ..  380199 +   -10  -4.77775   CGAACTATAAAAAGA          AAGGGCTTCC CAGGT GGAAGCCCTA          TTTCTTTTATGGAAT 100 160
SH02_RS01820 NONE
         alr  383931 ..  383951 +  -3.9  -3.98661   TGCTCTTATAAAGGT            CGTGCCTCT GGC GGATGTACG            TTTGTCATGAGTCTC  58 137
SH02_RS01830  385515 ..  385527 +  -4.9  -2.78935   TCGGGTTTGTTACGA                TAGAA TAT TTCTA                TATCCTCAAGAATAT  46 275
        aphA  387086 ..  387120 +  -6.5  -5.52384   AATTCAGAATACTGA    CAG-A-GCGGGAGAGCG TGA TGCTCTCCCGAATGCTG    TTTTTTTAATCACAC  91 26
SH02_RS01845 NONE
SH02_RS01850  388029 ..  388061 +  -4.8  -2.93393   ATCGGCTTAAGGAAG     CGT-GCCGTGTGTGA TGCT TCGCACTCCGCGACG      GTTTCTGGCGTACCG  50 82
SH02_RS01860  391692 ..  391708 + -10.1  -3.39505   AGCCATAAAAAAGAA              GCCTCCG TTA TGGAGGC              TTCTACGTATCAGGT  76 98
SH02_RS01870  394172 ..  394196 +  -6.5  -2.80816   GCCAGTAACAGGCGG         CG-TTGGCGA ATGTAA TCGCCAAGCG          TCTGATGCGTCACCG  51 182
SH02_RS01880  394888 ..  394912 + -14.4  -4.67651   GGAAGATGAACAAAA          CTAAAGCGCC ACAAG GGCGCTTTAG          TTTGTTTTCCGGTCT 100 22
SH02_RS01885  396802 ..  396833 + -12.4  -4.37658   TCTTTCATCGGATTC      TGAAAACGGGTGGC AATG GCTGCCCGTTTTTA       TTTTCTCCGCACATT 100 41
SH02_RS01890  398628 ..  398645 +  -9.9   -3.5774   AGGTAATCTGAAAAA             GGTGCAA TCTT TTGCACC              TTTAACAGGTTAGCT  80 66
        nrfA NONE
SH02_RS01920 NONE
SH02_RS01925 NONE
SH02_RS01930  408431 ..  408444 +  -2.3  -2.98304   GTATTCCTTCCTGAA               GTCGG TTTT CTGGC                GTTGTTGTTAAGTCT  42 66
SH02_RS01935 NONE
SH02_RS01940 NONE
SH02_RS01945  411211 ..  411223 +  -3.4  -3.84246   CAAATAAAAATCTTT                CCAT AACAA ATGG                TTATTCATTAATCCT  53 139
SH02_RS01950  413244 ..  413278 + -10.7  -3.08867   CGCATCCGACATCAA     TGCCTGATGCGACGC TTGCC GCGTCTTATCAGGCC     TATCTTAACCGTTGG  79 517
SH02_RS02025 NONE
SH02_RS02030  431477 ..  431489 +  -6.2  -3.53811   GACAGCCACGCCACC                CGGC TGTGT GCCG                TTTCCAGCAGATAAC  58 458
SH02_RS02115 NONE
SH02_RS02120  447188 ..  447246 +  -3.2  -3.62522   AACTGCCCAATTCAG GCGTCAACTGGTTTGATTGTACATTCC TTAACC GGAGGGTGTAAGCAAACCCGCT-ACGC TTGTTACAGAGATTG  51 128
SH02_RS02125  448896 ..  448912 +    -3  -2.58999   TCTTATCAGGCCAAT              TGAACT CTTAA GGTTCA              CTTAATCTCTGACGC  42 70
SH02_RS02130  449083 ..  449100 +  -6.3  -4.07568   ACCCAGGCCCGCGTG             CCGG-AAG TCT CTTGCCGG             TTTTGCAGGAAAAAC  68 56
SH02_RS02170  458657 ..  458669 +  -3.3  -3.88291   TTTACTGCTGCTTCA                CGCAG GAT CTGAG                TTTATGGGAATGCTC  53 14
SH02_RS02175 NONE
SH02_RS02180  461659 ..  461689 +  -3.3  -2.52519   CAATAGCTAACGAAA       ATGGCCTGATG CGATATGTT TATCAGGCCAC       GTCTTAATGTAATGC  42 47
SH02_RS02200  466386 ..  466410 +  -4.9  -4.07568   TCCACTGGCACAGTG          TGCGTAACGTC TGC GGCGTTAAGCC          TTTTGGCAAGCGACG  62 226
SH02_RS02215 NONE
SH02_RS02220  469494 ..  469521 +  -6.4  -2.98491   CCATCATCTTATTCC        TCAGTGTTCTTA AGAT TAAGATCATTGA         TGTATGATATGAATT  56 315
SH02_RS02225 NONE
SH02_RS02230  470007 ..  470030 + -15.4  -3.35813   TTGCGGAACGATGAA          CGAAGCAGTC GCCT GACTGCTTCG           TTCATTAAAGTGAAA 100 104
        fxsA  485996 ..  486028 +  -4.8   -5.0925   GGATTAATGTCGAAA      CGCCGGATTATG TGGTTATGC CATTTTCCGGCG      TTTTTCGTTTTGGCA  80 34
       groES NONE
       groEL  489548 ..  489571 + -12.4  -5.50723   GCAGAAATAAACAAA          CCCCCGGGCA GAAA TGTCTGGGGG           TTTTTCTTTTGGTCA 100 55
SH02_RS02310  490386 ..  490397 +  -5.8  -4.02911   GAAATCAAGCATTCG                GCGA GTGA TCGC                 TTCTATTTCTTTACC  68 402
SH02_RS02325  493117 ..  493148 +   -13  -3.65046   GCGTGAAGTAATGCG      GTTGTGGTGCGGCC TGCA GGCTGCACCATCAC       TTATTCAGGTCAGAG 100 30
SH02_RS02330  493273 ..  493285 +  -3.3   -2.6432   TCGGCAACTCCATCT                CTCGC GCT GCCAG                CTAATTTTTCTTCTC  42 9
SH02_RS02335  493550 ..  493581 +    -8  -5.26316   GCGCAGCAATAAGCA      ATAACGGTACGACA GCTG TGTCGTGCCGTTTG       TTTTTTCTGCGATAG 100 29
SH02_RS02340  494320 ..  494330 +  -3.2  -3.42197   TCTGCTGCCACATTC                 CTCT GTC AGGG                 TTATAGCCTTTATTA  49 306
SH02_RS02375  500613 ..  500639 +  -7.3  -3.05596   GTATTGGTTTTTACG        CTGC-CTGCTCA ATGT TGCGCAGTGCAG         TTCAGTGGGCACGTG  61 171
SH02_RS02380  502175 ..  502198 +  -3.7   -2.8655   CAAAAAATCCGCAGT          GGGCGGTGG AATAAC CCGATGCCC           TATCGTCTACCTGAC  45 12
SH02_RS02385 NONE
SH02_RS02390  503219 ..  503232 +  -5.9  -2.78384   TCTTCGCTATTGGCA               TCGGC AGGG GCCGG                TATCGTCAACACCAC  51 379
SH02_RS02410  509039 ..  509053 +  -4.2  -2.53759   AATCCACTTGCGGCG               GCGTGA TTT TGACGC               TAAATTGAACGTCTT  45 68
SH02_RS02415 NONE
SH02_RS02420 NONE
SH02_RS02425  509528 ..  509555 +  -3.4  -5.27206   CTCTCAATAAAATAT        CCA-CAGCGACGC GAT GCGTTATTGCTGG        TTTTTGTTGTCTCTG  79 48
SH02_RS02435 NONE
SH02_RS02440 NONE
SH02_RS02445 NONE
SH02_RS02450 NONE
        miaA NONE
         hfq  517464 ..  517496 +  -7.1  -2.54504   CGGGCTGTTTTTTTA     CA-CGGGGAGC-CAG CGATC CTGCGTTCCCCGCTG     ATCTATTTAGAGGGT  58 46
SH02_RS02465 NONE
SH02_RS02470 NONE
SH02_RS02475  521181 ..  521207 + -13.1  -5.38839   TACAGGTCAATAAAG        CCACCG-CATCC TCAG GGATGTCGGTGG         TTTTCTTTTTCTATA 100 55
SH02_RS02480 NONE
SH02_RS02485  522887 ..  522921 + -11.6  -3.10975   CAGTGTGATACATTG    CTGTGTCGGGTAAGC CATTAC GCT-ATCCGACACAG     TGTTAAATCCTCGCT  84 80
SH02_RS02490 NONE
SH02_RS02495  525949 ..  525968 +  -8.6  -3.20723   GCAGAGTGATCAATA            CCCTCTTT AAAA GAAGAGGG             TTAGATTGCTGACAA  67 32
SH02_RS02500  526874 ..  526891 +  -9.9  -6.32216   CAGAATTATGAAAAG             CCATCCA GATT TGGATGG              TTTTTTTTTGTCTAT 100 46
SH02_RS02505 NONE
SH02_RS02510  528104 ..  528130 + -12.4  -2.79004   GGGCGAGTAATTTTT         TTGCCAGCCT CGCTAAA AGGCTGGCAA         CTATTTTAAGGATAA  89 31
SH02_RS02515 NONE
SH02_RS02520 NONE
SH02_RS02525 NONE
SH02_RS02530  531074 ..  531103 + -13.7  -3.14132   TCTGTCATGAATCCA       TGGCAGTGACCAT ACTA ATGGTGACTGCCA        TTGATGGAGGGAGAC 100 61
SH02_RS02535  533108 ..  533150 +  -3.5  -4.98531   GGATAAGTCACTAAT TGCAGC-GAGGGTGAGGCAA GTAA TTGTTTCATCGTCAGCTCCA TTTTTCGTTTCCCCA  76 386
SH02_RS02550  535033 ..  535045 +  -4.7  -3.57792   CGCCCGGATTAACCA                GCTGC GAG GCCGC                TTTAGCGATACGTAC  55 510
SH02_RS02565  538217 ..  538231 +  -2.8  -4.48987   AACTGGCAGAACAGT               CTGCTT AAT AAGGAG               TTTTGATTATGACCG  61 18
SH02_RS02570 NONE
SH02_RS02575 NONE
        ulaD NONE
SH02_RS02585 NONE
        araD  541441 ..  541453 +  -9.1  -3.46435   TACGTGGTAGTACGT                TGCGC CTT GCGCA                TCTGTTTCTTCATTT  71 233
SH02_RS02600  541827 ..  541837 +  -2.4  -3.27525   AGGGGAGATTTATTT                 CGGC TCT GCCC                 TTGAGTTTAGCGAGG  45 11
        rpsF NONE
SH02_RS02610 NONE
        rpsR  542916 ..  542926 +  -2.4  -2.50307   TCGCCATCAGTAATC                 GGTC ACG GTCC                 ATTAATACGACTTTG  39 28
        rplI  543425 ..  543453 + -16.1  -3.33352   TATTCAACGAGACGT        AAAAACGCCGACC ATT GGTCGGCGTTTTG        CTTTCTATTTTTCGT 100 46
SH02_RS02630  545005 ..  545035 +  -7.4  -4.13014   GTATCAATGGTTAAG       CCCGTCACCACGCC GCT GGCGTTCTGGCGGA       TTTTCACCATCTGCC  74 88
SH02_RS02640  546581 ..  546591 +    -4   -3.1372   AAATTAACATTAGAT                 CTAA ATC TTAG                 TATTCATCCCGCGTA  49 204
SH02_RS02645  548136 ..  548160 + -16.5  -4.19817   TAACCGCATTATCAT          GCTGGATGGCG CAA TGCCATCCAGC          TTTTAGATCACTCAC 100 38
SH02_RS02665  551410 ..  551436 + -12.3  -2.60798   AAGATGCGCCAGCAT         CGCATCCGCCA ATAAA TGCCGGATGCG         GTTGATGATTTATAG  88 95
SH02_RS02675  554345 ..  554387 + -10.1  -3.86346   GTCTATTTACTAAAT TCA-GATGGCAGAAACAG TGTATTTC CTGATTCTGCCATCCTGA TTTCTCCCAACCTAA  84 28
SH02_RS02680  555493 ..  555523 +    -7  -2.53831   AACTCAGAGACTTAA       TTCCCCTATC CCATAGATAAC GATAGGGGAA       AATTATTTTTGCAGA  55 26
SH02_RS02690  556682 ..  556702 + -16.9  -3.50335   TATGCAGTAATAAGA            CGGCTCCTG ATT CAGGAGCCG            TTGATGTTTCTGGGG 100 67
SH02_RS02705 NONE
SH02_RS02710  560944 ..  560955 +  -4.4  -2.69546   ACAGTTTTACATCGG                TCTG GGGC CAGA                 ATTATGAGTTTATGG  45 7
SH02_RS02715 NONE
SH02_RS02720  565090 ..  565114 + -10.8  -5.00616   ATAAGTAACCATATG         CATACGCCACC TTCG GGTGGCGT-TG          TTTTTTGCGAGACGA 100 33
SH02_RS02725 NONE
SH02_RS02730  566195 ..  566213 +  -5.2  -4.07568   ACCAGTTTCGCATCT             TCACCGGC TTC GTCGGTCA             TTTTCAGAACGCCAA  65 331
SH02_RS02740  567848 ..  567862 +  -7.1  -3.42996   ACTGAAGCCTGATGC               GACGC TTACC GCGTC               TTATCATGCCTACTG  66 108
SH02_RS02745 NONE
SH02_RS02750 NONE
SH02_RS02755  571816 ..  571835 +  -6.5  -3.40371   TTCTTCACCCCGTTC            GGAAACT TAATGT AGTTTCC             TTCGTTGATGGAGTA  56 416
SH02_RS02765  574036 ..  574065 + -13.5  -2.74792   ATATAGTATGCGTAG       GCCGGATAAGGCG TTCA CGCCGCATCCGGC        ATTTGAGCATAGTGC  93 56
        pmbA NONE
SH02_RS02780  576710 ..  576743 + -14.7   -3.4072   ATCGTTAATTCCTCA     TTTCCCTGTTGCCTG CACT CAGGTAACAGGGAAC      TTATCATCGCAAATG 100 33
SH02_RS02810  587342 ..  587361 + -10.7  -3.65827   TGTCATCAGACTTAA            TCCGGGC ATGATA GCCCGGA             TTTCCATCAAGATTA  84 199
SH02_RS02835  590142 ..  590167 +  -6.1  -2.60723   CGTGAGTAAACAAAA         CCCAGACATCA TGGA TAATGGCTGGG          CTTAATTGAGCGTAG  54 475
SH02_RS02850 NONE
SH02_RS02855  592168 ..  592199 +  -7.4  -3.85698   ATGGCGTGATGACTT      TTCGCCGTAAAT AACTCAAG GTTTACGGCGAG       TTTGTGAAAAGAGCG  70 32
SH02_RS02860  594107 ..  594137 +  -9.8  -3.87815   TGCATAAAATAATGT       GATGCCGGGA TGGTTTGTATT TCCCGGCATC       TTTATAGCGATAGCA  84 34
SH02_RS02870  595851 ..  595875 + -15.7  -5.47399   TTGTTAATGTTCGAA          TGCCCGCGAGT TGA ACACGCGGGCA          TTTTTTTAGAGTTCG 100 140
SH02_RS02880  597785 ..  597804 +   -15  -3.72073   GTAAGAGATAAAAAA            GGCCGGAG CATG CTCCGGCC             TTCGTTTTCATCACT 100 37
SH02_RS02900 NONE
SH02_RS02905  605261 ..  605284 +   -14   -3.9461   AACCGAATGAACGAA          TAAAGGGAGC GAAA GCTCCCTTTA           TTATTGTTAGCAAAG 100 39
        idnK  612386 ..  612401 +  -6.8  -3.05562   GCCAGTGCTTTCAGT              GCCTGCG GAT CGC-GGC              TATTCACCACTTTAT  56 378
SH02_RS02945  613351 ..  613366 +    -9  -5.64274   AAAAGTATGTAAATA              GACCTC AACT GAGGTC               TTTTTTTATGCCTGA 100 40
SH02_RS02950  614791 ..  614810 +   -15  -2.88832   TTAAAACAGTAATCA            TCCCGGGC AAAT GCCCGGGA             ATTATTCTAGGATTA 100 29
SH02_RS02960 NONE
SH02_RS02965  616537 ..  616548 +  -2.2  -3.06501   GGTTAGTTATCTTCG                TCTG TCAG CGGA                 TTGAATGGCGGTATA  42 215
SH02_RS02980  618065 ..  618083 +  -5.3  -3.53343   GCCCGCATAACCCGT             TGACTTC CTGAA GAAGTCG             TTTCAGGGAGAGATT  57 15
SH02_RS02985  618441 ..  618456 +  -5.4  -3.85698   TCTTCGGGTAAGTGA              TACCTG CCGT CAGGTG               TTTGTGCACCGGGCC  61 116
SH02_RS02990  618939 ..  618968 +  -9.3  -4.59109   CATCTTGGTTCTGTA       ATGCCAGTCAGTT AAGC AACTGACTGGCTC        TTTTTCGGGGCTGTG 100 42
SH02_RS03000 NONE
SH02_RS03005  623261 ..  623286 +  -5.4  -4.62984   AATGTAAAAACTATA         CGCCTCTTGA TTTAAT TCAGGAGGCC          TTTTATGTATGATCA  73 34
SH02_RS03015 NONE
SH02_RS03020  624602 ..  624630 +    -4  -3.91897   TCCCATGTCAGTGAT        TTTCTGAGTT CTGACGGTA AACTCAGGAA        TTTGTCGGTAAGAGC  59 317
SH02_RS03035  626717 ..  626727 +  -5.4  -2.94695   CCAGCCGCAGTACAG                 GTCA CGA TGAC                 TCTGGTTAATGATAC  52 102
SH02_RS03040  627171 ..  627193 +  -6.2  -5.21709   ACCAGCTCCGTGAAT           GTCCGCTCTG GCA CAGAGCGAAA           TTTTTTGATCTCCCC  87 216
SH02_RS22915  635839 ..  635853 +  -7.8  -2.64616   TTCTGAGCCTGCTGT               CGGCCT TTG AGGTCG               TGGTATAGATGACGG  60 3
SH02_RS03090  636149 ..  636172 + -12.5  -3.95647   CTAATCAATAAAATC          CTGCCCCAT ATCTAC ATGGGGCAG           TTGTTCATTCTTTTA 100 103
SH02_RS03180 NONE
SH02_RS03185  653305 ..  653315 +  -4.6  -4.63542   AATAACAACGGTTTA                 TGCG GTG CGCG                 TTTTTCACCCTTGTG  71 452
SH02_RS03205  656928 ..  656938 +    -4   -4.7878   AAAAACTAAAGATCT                 TAGT TTA ACTA                 TTTGTTTTATAAATA  71 87
SH02_RS03215  658769 ..  658798 + -10.9  -5.10064   TTAATGTAATTGACT       GATAGCCACATCAC TCC GTG-TGTGGTTATC       TTTTTATCTATTGGG 100 388
SH02_RS03220 NONE
SH02_RS03225 NONE
SH02_RS03230  660608 ..  660619 +    -3  -3.62411   TTATGATATGGACAG                TTTG GCCC CAAA                 TGTTTCATCTTTTGG  51 46
        fimA  661382 ..  661395 +  -3.1  -3.83026   TATTTCTATTAGCGT               CGTTG CTGC CAATG                TTTGCTCTGGCCGGA  53 121
SH02_RS03240 NONE
SH02_RS03245 NONE
SH02_RS03250 NONE
SH02_RS03255 NONE
SH02_RS03260 NONE
SH02_RS03265  667542 ..  667568 + -14.4  -3.10537   AGACTTTGTCATCAG         TCTGAGCCTGCC ATT GGCAGGCTCTGG         TGTCCTTTTACGCTA 100 234
SH02_RS03275 NONE
SH02_RS03280  670450 ..  670474 +   -15  -3.58329   AGCCGTTAATATCCA          CCGGCATGGC TGCGC GCCGTGCCGG          TTCCTTCTTCCTTGC 100 32
SH02_RS03285  672009 ..  672040 + -12.5  -4.94243   TACCCTACAGACTTA      CTGGTCAATCAAA CTGATA TTTGGTTGACCAG       TTTTCGTTTTTTTGC 100 50
SH02_RS03295  672986 ..  673010 +  -9.3   -4.2528   GACTTATTATAATAA          GCGCAAGGG TAAACGT TCCTTGCGC          TTTCTTAAATTAAGA  88 39
SH02_RS03320 NONE
        iraD  676295 ..  676317 +  -4.1  -3.05384   ATGCATAGGCCTGAA           TCGGGATCA CCAGT TCGTCCCGA           TTCAGTACAACGAGC  46 113
SH02_RS03350  680401 ..  680420 +  -5.6  -3.16676   GCCGCGCCGCAGAGA            GTGGCGCT GGCA AGCGCCGA             TGTTCCATTGCTGAG  52 120
SH02_RS03390  688872 ..  688885 +  -5.3  -2.60723   GGCATCCGGCATGAA               CAAAG CGTA CTTTG                CTTAATTCAGGCTGG  49 157
SH02_RS03400  690766 ..  690784 +  -5.2  -3.05997   TTTATAGTGTAGGCT             GGAGCTGC TTC GAAGTTCC             TATACTTTCTAGAGA  52 54
SH02_RS03405  692110 ..  692136 + -10.8  -3.61398   GCCGGCTGGATGATC         CTCCAGCGCGGG GAT CTCATGCTGGAG         TTCTTCGCCCACCCC  84 157
SH02_RS03430  697776 ..  697797 +  -5.8  -2.77899   TACGCCAGTGCCCCC           GCTGCGGT GACGCA ACCGCAGA            TGATTAGTGCCAGAC  51 135
SH02_RS03445  701394 ..  701420 +  -5.8  -6.32017   ATTAAAGTTGCCATG         CAGCGTCCGG GGAAGTG TTGGGCGCTG         TTTTTTTTGTTTCTT 100 53
SH02_RS03480 NONE
SH02_RS03485  709351 ..  709362 +  -2.2  -4.36914   GTGGATTATCTTCAC                CGTT CGTG AGCG                 TTTTCTCAAAAAAGA  60 185
SH02_RS03495  710766 ..  710778 +  -4.9  -3.14132   TTCGCATACCATCAA                TTCTT AAA AAGAA                TTGCTACCACGGAGG  51 397
SH02_RS03520 NONE
        rimI NONE
SH02_RS03530  713733 ..  713747 +  -9.2  -3.14132   TCGTTTTCAACAAGC               GCGGCG CGA TGCCGC               TTACTCAAGAAGAAA  72 81
        prfC  715368 ..  715393 + -14.7  -2.68338   ATTAATTCTTGCCTC         CAGGGCGCGGT AGCC GCTGCGCCCTG          TCAATTTCCCTTCCT 100 36
SH02_RS03540  716425 ..  716439 +  -4.2  -2.62396   TAAAAATATCGCATT               GAGTGA TTT TCACGC               TCATATCAAGCGATG  45 95
SH02_RS03545  716675 ..  716693 + -14.6  -4.28049   AAAATTTTATCCAAA             GCCAGTCC AGC GGACTGGC             TTTTGCGGTTTTAGC 100 57
SH02_RS03550 NONE
SH02_RS03555  718733 ..  718772 + -11.5  -2.62003   CGGATAAGGCGTTCA  CGCCGCATCCGGCAGTTG GCGCA CAA-TGCCTGATGCGACG  CTTGTCGCGTCTTAT  80 144
SH02_RS03570  721636 ..  721646 +  -3.2   -3.3761   AGAATACTAACAAAC                 TCGC AAG GTGA                 ATTTTATTGGCGACA  47 89
SH02_RS03575 NONE
SH02_RS03580  723914 ..  723924 +    -4  -3.84451   CGAATAACGGTATAC                 TGAT CTG ATCA                 TTTAAATTTGAAGCA  57 34
SH02_RS03585  725189 ..  725208 + -10.7  -4.38927   GTTCTGATGGATTTG            GGCGGAG CGTTGA CTCCGCC             TTTGTTATGTCACAA 100 34
        deoD  725990 ..  726013 +   -16  -4.87037   CGATTGCCTTGTGAA          GCCGGAGCGG GAGA CTGCTCCGGC           TTTTTAGTATCTATT 100 59
SH02_RS03595  727434 ..  727455 + -12.3  -2.52464   CAAATCGAAGAGAAA           GTTGCCCGC ATGG GCGGGTAAC            TACCTTACAGCCCCC  86 5
        serB NONE
SH02_RS03615 NONE
SH02_RS03620 NONE
SH02_RS03625  733169 ..  733198 + -13.5  -3.08581   TTGCTGGTTTTGTAG       GCCGGATAAGGCG TTCG CGCCGCATCCGGC        ATTTTACGCATTACT 100 92
SH02_RS03635  737035 ..  737051 +  -4.5  -2.61144   ACTGATCCGCACGTT              TATGATA TGC TATCGTA              CTCTTTAGCGAGTAC  48 36
SH02_RS03640  737933 ..  737948 +  -8.2  -3.76224   TTGGCTACCCGATTT              CGTGCG CCAG CGCGCG               TTTCCTCACTGCCAA  72 518
SH02_RS03650  739068 ..  739080 +  -6.3   -3.1829   CTGGGCTAACGCGGT                GGTAT AGA ATACC                TCTTGCTCGTCGTCT  54 295
SH02_RS03660 NONE
SH02_RS03665 NONE
SH02_RS03670 NONE
SH02_RS03675  743901 ..  743918 + -12.7  -5.76949   GTTGAAAAATAAAAA             CGGCGCT AAAA AGCGCCG              TTTTTTTTGACGGTG 100 42
SH02_RS03685  745086 ..  745096 +  -2.6   -3.4252   ATTGTCGAGATTTAT                 TTTT TAT AAAA                 TTATCCTAAGTAAAC  48 215
SH02_RS03690  746113 ..  746134 +  -4.5  -2.91322   TGAGTAAATTAAAAT           TTTATTGAC TTAG GTCACTAAA            TACTTTAACCAATAT  50 156
        thrL  746286 ..  746307 +   -13  -6.06723   GAAACACAGAAAAAA           GCCCGCAC CTGACA GTGCGGGC            TTTTTTTTTCGACCA 100 41
        thrA NONE
SH02_RS03705 NONE
SH02_RS03710  751050 ..  751076 +    -8  -5.24129   CATTATCTCAATCAG        GCCGGGTTTGC TTTTAT GCAG-CCCGGC         TTTTTTATGAAGAAA  95 49
SH02_RS03715 NONE
SH02_RS03720  751570 ..  751603 + -11.7  -2.62043   CAATCCGGCATTCAG     CGCCTGATGCGACGC TGGC GCGTCTTATCAGGCC      TACGTTAATTCTGCA  80 59
SH02_RS03735  755204 ..  755233 + -12.9   -2.5294   CTGCTGTAATCATTC       TTAGCGTGACCGG GAAG TCGGTCACGCTAC        CTCTTCTGAAGCCTG  90 32
        mogA  755965 ..  755979 +  -4.2  -3.13164   ATCGGCAGAACGGTG               CGACCA AAC TGCTCG               TTCAGTACTTCACCC  47 91
        dnaK  760111 ..  760148 + -17.1  -3.25823   AACGGGTAATTATAC   TGACACGGGCGAAGGGGA ATT TCCTCTCCGCCCGTG-CA   TTCATCTAGGGGCAA 100 51
SH02_RS03765  761394 ..  761415 +  -4.4  -3.52073   GTGGCGGGGATCACT           CCCATAAG CGCTAA CTTAAGGG            TTGTGGTATTACGCC  52 115
SH02_RS03770  762974 ..  763006 +  -4.9  -4.64844   TTCAGCATATAGGAG     GCCTCGGGTTGATG GTAAAA TATC-ACTCGGGGC      TTTTCTCTATCTGCC  71 436
        nhaA  764677 ..  764696 + -10.7  -4.59414   CAGGACGGTTTACCG            GGGAGCC ATAAAC GGCTCCC             TTTTCATTGTTATCA 100 41
        nhaR  765633 ..  765659 +  -5.1  -2.62043   GTGCGTTAATCGGCA         GCTCCCCCA AAGTTAAGG TGGGGGAGA         TAGATTAGTTGTACA  49 32
SH02_RS03800 NONE
SH02_RS03805  768346 ..  768359 +  -3.7  -3.54475   TTTGGGCTAACAAAA               CCGGC TTAA GCCTG                TTATGTAATCAAACC  51 17
        ileS NONE
        lspA  771735 ..  771784 + -18.1  -3.53811   GATGCGATGCTGACG CATCTTATCCGGCCTACAGATTGC TGC GAAATC-GTAGGCCGGATAAGGCG TTTACGCCGCATCCG 100 53
SH02_RS03820 NONE
        ispH  773262 ..  773281 +  -9.3  -5.24129   TAAGTTATGCGAAAA            TGCCGGT CTTGTT ACCGGCA             TTTTTTATGGAGAAA 100 54
SH02_RS03830  774230 ..  774257 +  -6.4  -3.70149   CTGTCACATGTTATT        GGCATGCAGTC ATTCATC GACT-CATGCC        TTTCACTGATATCCC  63 42
SH02_RS03835  775192 ..  775211 +  -2.2  -4.35483   TGTACTTGATCTCAA            TAATTTGT AACC ACAAAATA             TTTGTTATGGTGCAA  58 16
SH02_RS03850 NONE
        carB  780098 ..  780117 +   -10  -6.07627   ATCGAATAACTAATA            CGGTTCTC TGAT GAGGACCG             TTTTTTTTTGCCCAT 100 79
SH02_RS03865  780810 ..  780832 +  -8.4  -4.33165   TAGGCGTCACATCCG           TCGTCCCC TGCAAAC GGGGGCGA           TTTTCCTCCATTTGC  82 134
SH02_RS03900 NONE
SH02_RS03905  790111 ..  790122 +  -5.8  -3.58037   GAAGATCCTTCCGGC                GCTG ACCG CAGC                 TTTAGCGCGTTGATC  61 1
SH02_RS03910 NONE
SH02_RS03915  791743 ..  791753 +  -2.4  -2.83798   CCTTTGGTGTGGAGT                 TCCG TTA CGGC                 TGATGTTGGTTTGAT  41 12
SH02_RS03920 NONE
SH02_RS03925 NONE
SH02_RS03930  795767 ..  795779 +  -3.3  -3.72363   ACATCATCCTCGCAC                CAGTC GAC GACGG                TTTACGCTTTACGTA  51 155
        folA  796333 ..  796365 + -15.6  -2.58999   GAATTTACGGCTAGC      GCCGGATGCGACGC CGGTC GCGTCTTATCCGGC      CTTCCTATATCAGGC 100 50
        djlA  804224 ..  804243 + -11.4  -3.90744   TGCCCACGATTAAAG            GTGGCCGC CCTG GCGGTCAC             TTCTTTGAGAAAAGG  95 64
SH02_RS03975  805625 ..  805640 + -10.4  -4.03234   GGCAGAAACAAAAAA              TCCCCG GACT CGGGGA               TTTATGTACAAGAGG  89 365
SH02_RS04010  817321 ..  817333 +  -4.8  -3.25088   AGTAGCATAGGGTTT                GCAG AATCC CTGC                TTCGTCCATTTGACA  53 75
SH02_RS04015  818151 ..  818165 +  -7.1  -3.30124   CGGGTTGCCTGATGC               GACGC TTGCC GCGTC               TTATCAGGCCTACAA  64 55
SH02_RS04040  823571 ..  823591 +  -9.7  -6.17268   GTGTAAAATCACCCG            CCAGCAGAT TAT ACCTGCTGG            TTTTTTTTATTCTCG 100 71
SH02_RS04045  825290 ..  825300 +  -4.6  -4.72272   ACGAAGTCCGGGTTT                 GGCT GTT GGCC                 TTTTTCATCCAGAAA  72 510
        leuO  831324 ..  831363 +   -16  -5.49234   CAAACGCTAACTGAT  TGCAGAATAGGTCAGACA TGAA TGTCTGGTTTATTCTGCA   TTTTTTATTGAATGT 100 31
SH02_RS04080 NONE
        ilvH  833844 ..  833873 +  -2.1  -3.53091   CGCGCGGCGATAAAA       TAATGCGTTGAGA ATGA TCTCAATGCGCAA        TTTACAGCCCAACAT  47 15
SH02_RS04090  833984 ..  834006 +  -2.8  -4.87318   GTTAATGAATTTAAC          CCATA-CCA GTACAA TGGCTATGG           TTTTTACATTTTACG  67 57
SH02_RS04095  835244 ..  835259 +  -6.8  -2.72043   TTATTTTGTTACATG              CGGCGA TGAA TTGCCG               ATTTAACAAACACTT  56 231
SH02_RS04100 NONE
SH02_RS04105 NONE
SH02_RS04110 NONE
SH02_RS04115 NONE
        murE NONE
        murF NONE
        mraY NONE
        murD NONE
SH02_RS04140 NONE
        murG  846721 ..  846742 +  -3.8  -2.64651   GCCCGGGCGTAATTG           TAGCGATGC CTTTT GCATCG-TA           TGAATTTAAGAAGTT  44 29
SH02_RS04150 NONE
         ddl NONE
SH02_RS04160 NONE
        ftsA NONE
SH02_RS04170  852512 ..  852533 +  -6.7  -3.09208   TGCTAAACTGGCCCG           CCGAA-TGTA TAG TACACTTCGG           TTGGATAGGTAATTT  59 75
        lpxC  853507 ..  853550 +  -4.5  -6.17292   CTGTCGTATAAAATT CGACTGGCAAATCTGGC ACTCTCTCCG GCCAGGTGAACCAGTCG TTTTTTTTTGAATTT 100 52
SH02_RS04180  854253 ..  854269 +  -5.7   -2.8704   TACTTCATTTTATTA              ACTCCGC AAC GCGGGGC              GTTTGAGATTTTATT  53 55
        secA  857012 ..  857029 + -12.7  -5.33866   ACTGTTGAAGTAAAA             GGCGCAG GATT CTGCGCC              TTTTTTATAGGTTTA 100 47
SH02_RS04190  857556 ..  857585 + -12.1  -2.72144   AATTTGTTTTTGTAG       GTCGGATAAGGCG TTCA CGCCGCATCCGAC        ATTTGCACAAGATGC  83 142
SH02_RS04215  860502 ..  860527 + -16.2  -3.32963   CCTGTAATCTCCCAA         CGCTGGCGTG GAGCAA CACGCCAGCG          TTATCCCATCCCACT 100 34
SH02_RS04235  864023 ..  864045 +  -5.4  -4.57073   TCGACTTCTACTGGC           GCATCCGGGT GCA GCCAGGACGC           TTTTTCGACCGCCTG  72 247
SH02_RS04245 NONE
SH02_RS04250  866198 ..  866208 +  -2.4  -3.46586   ATTAATGCGCTTTTA                 CGGC TTT GGCG                 GTTTTCTCTTTAAAC  47 82
        pdhR  868867 ..  868892 +  -4.9  -3.24924   GAAAGAATTAGTGAT         TTTTCTGG-TAA AAA TTATCCAGAAGA         TGTTGTAAATCAAGC  53 30
        aceE NONE
        aceF  873602 ..  873619 + -14.1  -5.32882   GATGTAAGTAAAAGA             GCCGGCC CAAC GGCCGGC              TTTTTTCTGGTAATC 100 34
SH02_RS04275  875378 ..  875394 +  -6.5  -5.50499   CCGGCAATTAAAAAA              GCGGC TAACCAC GCCGC              TTTTTTTACGTCTGC  91 61
SH02_RS04285  880254 ..  880279 +  -6.9  -6.02919   GCATAAACGACACAA         TGCCCGGTTAAT GAG ATTC-CCGGGCA         TTTTTTTATTTCTAA 100 61
SH02_RS04290  880842 ..  880879 +  -3.5  -3.19293   CTCGCGCATTTCTTT  CC-ACAGCGCAGCGGTA ATTTCC TGGCGCT-CGCTGTCGG   TTAAGTCTTCCGGTT  47 111
SH02_RS04310  884632 ..  884647 +  -3.2  -3.03771   TGATGTTAGGGTTTA              CGGTAT AAAA AGACCG               TATTCGGAAATATGC  44 18
SH02_RS04320  887977 ..  888010 +  -3.1   -5.4182   CTGGACGAGTAAGTG     TGAAGTTGCCGGATGT GTT GCATCCGGCA-TGGCA     TTTTTATTTGTGGTT  82 29
SH02_RS04330 NONE
SH02_RS04335  890485 ..  890514 +  -9.3  -4.10657   CGTAGCTAAGGCTAT       TTCCTCTCCTCTG GATT TGGGGGAGAGGAG        TTTTGACGGCTATCA  85 32
SH02_RS04340  891040 ..  891061 +  -5.2  -3.92542   CCGCGATTCTGATGG           CGCTTTTG CTACAA TAAAAGCG            TTGTTTCACCCTCGG  63 42
SH02_RS04345  892733 ..  892747 + -11.4  -3.56099   CCTGTCGTTAACGAA               GCAGGC GAT GCCTGC               TTTGAGGAAATTCTC  89 442
SH02_RS04355  893918 ..  893942 +  -7.8   -3.1855   GGGGTAAATTAATAA          CTGGCGCCAT CAGCC GTAGCGCCAG          TTAAGTATTACGCCA  63 67
SH02_RS04435 NONE
SH02_RS04440 NONE
        mrcB  913395 ..  913414 +  -9.2  -3.68662   GCTCAGATTGCGTAC            CGCTTGCG AACC CGCCAGCG             TTTCGAATATTATCT  78 150
SH02_RS04450  914027 ..  914039 +  -4.1  -3.44051   ACCCAGCGCACTATG                CGGAT GCC ATTCG                TTATAATGCTCGAAC  52 86
SH02_RS04465  917081 ..  917100 +   -15  -2.74322   CTAATTTCTCTTTTG            GGGCACGG ATTT CCGTGCCC             ATTTCACAAGTTGGC 100 37
SH02_RS04470 NONE
SH02_RS04475 NONE
SH02_RS04480  920855 ..  920868 +  -8.1  -3.30124   ACGGATGCCCGATGC               GACGC TGGC GCGTC                TTATCGGGCCTACAA  66 94
SH02_RS04490 NONE
SH02_RS04495  924306 ..  924334 + -14.7  -3.68024   ATCTAATCTGTTGTT        CATGTGCCGGATA AAC TATCCGGCACATC        TTCTCTCTTCAACGC 100 35
         dgt NONE
SH02_RS04520  929661 ..  929684 + -14.6  -3.52093   AGTAATCTCCCTCAA          CCCCTTCCTG AAAA CGGGAAGGGG           TTCTCCTTACAATCT 100 36
SH02_RS04525  931309 ..  931323 +  -7.1  -4.40003   AAACTTAACGCTCTT               GGCGA AAAAC TCGCC               TTTGTCTTTCTGGAA  75 372
SH02_RS04555  938116 ..  938136 + -11.1  -4.89729   GTACACGTTTGGTTA            GGGGGCC TGCATAT GGCCCCC            TTTTTCACTTTTATA 100 200
         tsf  939061 ..  939082 + -13.7  -4.84761   CTTAATTATCAAAAA           GGAGCCGCC TGAG GGCGGCTTC            TTTTTGTGCCCATCT 100 36
SH02_RS04565  940177 ..  940195 +  -3.1  -4.11751   ACTGTGTGTGACTGT             CTGGTCT GACTG AGACAAG             TTTTCAAGGATTCGT  58 280
         frr  940784 ..  940832 + -11.8  -5.27206   TGATTTCTTGAACGA CAAAAACGCCGCTCAGTAGATCC TTGC GGATCGGCTG-GCGGCGTTTTGC TTTTTATTCTGTCTC 100 38
SH02_RS04575  942164 ..  942181 +  -8.4  -6.02914   TATAAGGTCAGATAT             GCCGTG GTTTTA CACGGC              TTTTTTTTGTATAGG 100 130
SH02_RS04580 NONE
        cdsA NONE
SH02_RS04590  945228 ..  945243 +  -5.4  -3.33696   ACTTTTCAATGATTT              CTCTCG GTTA TGAGAG               TTAGTTAGGAAGAAC  55 13
SH02_RS04595 NONE
SH02_RS04600 NONE
        lpxD  949365 ..  949402 + -12.7  -4.07515   TTGTTCGCCAAACTT   TACGGCCTGTCTCATTC TTAC GATTGCGGCAGGCCGTG    TTATTATTGTCGTTT 100 52
SH02_RS04610  949881 ..  949902 +  -4.3  -2.79098   ACGATGATGTGTGCT           CGTAGCCGG GAGG CCTGATACG            TGATTGATAAATCCG  46 8
SH02_RS04615 NONE
        lpxB NONE
        rnhB  952417 ..  952428 +  -5.8  -3.01243   GTCAAACGCGCACTG                GGAC TTGC GTCC                 TGATTCTTGTGTCGA  54 11
        dnaE NONE
SH02_RS04635  956943 ..  956960 +  -9.1  -5.24129   AAAAGTTCTGAAAAA             GGGTCAC TTCG GTGGCCC              TTTTTTATCGCCACG 100 46
SH02_RS04640 NONE
SH02_RS04645  959628 ..  959648 + -13.3  -3.24925   TGTCATCGCCGCATT            TGCCCGGTA ACG TGCCGGGCA            TTGCTACTGTAAAAT 100 45
        tilS  961304 ..  961317 +  -8.1  -4.65895   ACCAGTAAGTTTGCC               GCAGC GTAT GCTGC                TTTTTCCCTGACAGC  84 358
SH02_RS04665 NONE
SH02_RS04670 NONE
SH02_RS04675  963453 ..  963466 +  -8.1   -3.4252   CTCAACGCCTGATGC               GACGC TGGC GCGTC                TTATCATGCCTACAA  68 157
SH02_RS04715  970886 ..  970900 +  -6.4  -3.12351   GGTTGAAGAGAAAAA               TCCTGA AAT TCAGGG               TTGACTCTGAAAGAG  57 161
SH02_RS04720  972675 ..  972688 +  -2.3  -2.72471   AAGAAGCGTACTTTG               CAGTG CTCA CACAG                ATTGTCTGATGAAAA  40 34
SH02_RS04725  972802 ..  972814 +  -6.3  -3.57309   CTCAGGCCTACCAAA                TTTGC ACG GCAAA                TTTGAAGAGGTTTTA  63 28
SH02_RS04730  972944 ..  972977 +  -6.7  -4.49756   GTTAAATAAAAAATA     CTTCAGAGTGTACCT GCAA AGGTTCACTGCGAAG      TTTTGCTCTTTAAAA  76 52
SH02_RS04735  976081 ..  976094 +  -2.4  -2.78679   AGAACGCAGAAGCGG               TCTG ATAAAA CAGA                ATTTGCCTGGCGGCC  41 85
SH02_RS04740  976234 ..  976249 +  -6.1  -2.82742   AAATTAAGCAGTAAG              CCGGT CATAAA ACCGG               TGGTTGTAAAAGAAT  55 44
SH02_RS04745  976359 ..  976378 +   -10  -5.92337   CCACTTATTAAGAAG            CCTCGAGT TAAC GCTCGAGG             TTTTTTTTCGTCTGT 100 38
        dkgB  977323 ..  977340 + -11.3  -4.68593   ATTAAGCCTCTCTGA             CAGCTCC TCCG GGAGCTG              TTTTTACATGCTCGC 100 36
SH02_RS04760 NONE
SH02_RS04765  979900 ..  979920 + -10.4  -5.25699   GGCATAAATAAAAAA            GGCACCGG GGGAA TCGGTGCC            TTTTTATTATCTGGT 100 34
SH02_RS04780  982904 ..  982916 +  -4.1  -3.14132   TTGGTAGCCTGTATC                TTCCA GTG TGGGA                TTCATCGCCGCGGCA  47 49
SH02_RS04790  984167 ..  984177 +  -2.4  -3.33744   AGGCGCTAAAAATAG                 CGAC TTG GGCG                 ATTTTTGCAGCAAAC  45 52
SH02_RS04795  984380 ..  984402 + -11.4  -5.88197   AATGAGTTCAGAGAG           CCGCAAGATT TTT AATTTTGCGG           TTTTTTTGTATTTGA 100 56
SH02_RS04800  985756 ..  985769 +  -5.3  -3.14229   GGAGCTATTAAAGGT               GCTAT TACG ATAGC                TATTAGTAAAAATAT  52 319
SH02_RS04815  987155 ..  987167 +  -4.7  -3.00918   CATTCCACAATCACT                CGCGC ATT GCCCG                CTTTATAATGTAGAT  48 460
SH02_RS04825  988175 ..  988192 + -12.7  -3.89354   TAGCGGATAAAGAAA             CGGAGCC TTTC GGCTCCG              TTATTCATTTACGCG 100 42
        gmhA  991528 ..  991541 +  -8.1   -3.4252   GCTGATGCCTGATGC               GACGC TGAC GCGTC                TTATCATGCCTACAA  68 90
SH02_RS04840  992442 ..  992457 +  -7.6  -3.21912   TGTAGTTTGATGCCA              GTTGTG GCTG CACAAC               TTCGTGGCTTAACGG  61 31
SH02_RS04860  994814 ..  994867 + -10.1  -2.56747   TGTAGGACGGATAAG GCGTTTACGCCGCATCCGGCAGTTG TACG CAGGTGCCTGATGCGACGCTGGCGC GTCTTATCATGCCTA  70 36
SH02_RS04865  995498 ..  995511 +  -8.1   -3.4252   GCAGATGCCTGATGC               GACGC TAGC GCGTC                TTATCATGCCTACAA  68 47
SH02_RS04875  998147 ..  998165 +  -5.2  -3.10343   TGGATAAGCAGCAGG             TGCTTTCG CAG CGAACGCG             TTAAATGCTGAATCT  53 3
SH02_RS04880 NONE
SH02_RS04885 NONE
SH02_RS04890 1000020 .. 1000030 +  -2.4  -2.87035   TGGGAAAATGGCAGA                 AGCG TTT CGCA                 TGCGTTTTTGAATTT  41 4
SH02_RS04895 1000526 .. 1000546 +  -3.1   -4.5442   TTGCAATGAAAATAA            CGCCCGCCT GGT ATGTGCGCG            TTTTCTGATTCCACA  63 48
SH02_RS04900 NONE
        prfH 1001720 .. 1001741 +  -2.2  -5.00616   TTGGCCCGATAGAAA           CCATGTCC ATTTCC GGATACGG            TTTTTTGAACAGACC  71 201
SH02_RS04915 1003784 .. 1003808 + -17.9  -4.47888   GGTCGCTAATCTTTT          CAACGCCTGGC ACT GCCGGGCGTTG          TTCTTTTTAACTTCA 100 32
        frsA NONE
SH02_RS04925 1005581 .. 1005603 + -13.5  -2.54276   GGCGTGAGTGAAATG           TGCCGGATG CATCA CATCCGGCA           ATATTCATTAAAACT  91 34
SH02_RS04935 NONE
SH02_RS04940 1009329 .. 1009383 +  -8.4  -3.69437   CGTGCGTAAATAAAA CCGGGTGATGCAAAAGTAGCCATTTG ATT CACAAGGCCATTGACGCATCGCCCGG TTAGTTTTAACCTTG  73 32
SH02_RS04945 1009661 .. 1009672 +  -2.2   -3.9941   CGCTCACTATACATC                CTTG GCTG CAGG                 TTTAGTTGTACACCA  53 174
SH02_RS05005 NONE
SH02_RS05010 NONE
SH02_RS05015 1018891 .. 1018911 +  -8.2  -2.62396   ACCTGAGCGGCAGTG            ACCTGCGG CATGC CCGCAGGG            TGATGTAACCCGCTG  63 95
SH02_RS05030 1020556 .. 1020566 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  65 24
SH02_RS05040 NONE
SH02_RS05045 1024280 .. 1024294 +  -4.2  -3.30124   CAGGCATTGCCGGAT               GGCG GCACAAG CGCC               TTATCCGGCCTACAA  51 92
SH02_RS05085 NONE
SH02_RS05090 1031748 .. 1031785 + -13.5  -4.45259   AATTATTTTAAGAGA   TAAAACCGTCTGCGGAA TATT TCCCGCAGACGGCTTTG    TTGTTTTTGAAATTT 100 39
SH02_RS05095 NONE
SH02_RS05100 1035331 .. 1035377 +  -9.3  -3.21993   GCGGTGGCGTGCACC GGCAGGC-GGCGGCCGATGCGT GAAT AGGCGATGGCGGCCAGCTTGCC TTCAATCTTCTCGAT  67 391
SH02_RS05120 1038778 .. 1038797 +  -5.8  -2.88579   TATTTAGTAGCGGAC            TTGCTGAT GACT ATCAGTAA             TCTATAGAAAATTGC  53 6
SH02_RS05155 NONE
SH02_RS05185 1050184 .. 1050214 + -12.8  -2.52795   TAATGCATTGAATGA       TAAAAATGGCGC AAATACA GCGCCATTTTTA       TAGGTTAAAAACATT  90 38
SH02_RS05225 NONE
SH02_RS05245 NONE
SH02_RS05250 NONE
SH02_RS05255 1063054 .. 1063064 +  -2.4  -2.62851   GGGTAGGATCATAAA                 GTCC TCG GGTC                 GTTGTCCACTCTTTT  38 60
SH02_RS05280 1067926 .. 1067939 +  -5.3   -3.1811   GTATAAGGGATGTAG               CCATT TTTA AATGG                ATTTCTTATGCCAAA  53 304
SH02_RS05285 NONE
SH02_RS05290 NONE
SH02_RS05295 1071133 .. 1071159 + -13.2  -3.59979   CTGCTCTTCTGTAAA         TATCCTGGTATT ACC AATGCCAGGATA         TTTACAGTGAAAAAG  93 139
SH02_RS05325 1078079 .. 1078104 +  -9.7  -3.99062   TGTTATTGCATAAAA         CCGCGCCATGT CTGC ATATGGCGCTG          TTTCTCCTACCTCTT  86 42
SH02_RS05335 1080113 .. 1080129 +  -3.7  -5.15634   ATCCCCGTTAATATG              CCATTTG GCG CAAATTG              TTTTTTAATCCACTG  79 113
SH02_RS05350 NONE
SH02_RS05355 NONE
SH02_RS05360 NONE
SH02_RS05365 1086332 .. 1086343 +  -7.2  -3.30124   GTTCATGCCGGATGC                GGCG TGAA CGCC                 TTATCCGGCCTACGA  64 48
SH02_RS05370 NONE
SH02_RS05375 NONE
SH02_RS05380 1089287 .. 1089306 +  -3.4  -3.29074   TATCACACTTACAGG            CGCTCGCC TTAT GGGGAACG             TTGCTGCTCTGTTTC  47 239
SH02_RS05385 1090682 .. 1090699 +  -2.7  -4.38927   GCGATTTCTGATAGT             GC-CTGGT TTA ATCAGAGC             TTTATTATCTGCGAC  59 208
SH02_RS05390 1091642 .. 1091653 +  -5.8   -3.2657   ATCTGTATATCTGTA                TGCC AACT GGCA                 TTCCATCTCTTTTTT  57 110
SH02_RS05395 1092621 .. 1092631 +  -2.4  -2.64099   ACCATAAGAGATAAG                 CGCC GCC GACG                 ATTCTGATAAGCGAA  38 431
SH02_RS05405 1093408 .. 1093427 +  -2.8  -4.07568   GGATAAAGCGTTCGC            GCTGCATT CGGC AGTTCAGC             TTTTCAGCCGCCGCC  54 108
        prpB 1096180 .. 1096193 +  -8.1  -3.30124   GCCGATGCCTGATGC               GTCGC TGAC GCGAC                TTATCAGGCCTACGA  66 67
SH02_RS05420 NONE
        prpD NONE
        prpE 1101171 .. 1101226 + -11.1   -4.4767   TAGGTTATTGTCGGA TGCGTCGCGCGGTGCATCCGGCACTG TGTGC CGATGCCTGATGCGACGC-TGACGCG TTTTATCATGCCTAC 100 38
        codB NONE
SH02_RS05440 1104059 .. 1104070 +  -7.2  -3.30243   GTTTATGCCGGATGC                GGCG TGAA CGCC                 TTATCCGGCCTACGT  64 64
SH02_RS05450 NONE
SH02_RS05455 NONE
        cynX 1107778 .. 1107802 + -12.9  -2.75822   TCGCTGAACTTGTAG          GCCTGATAAGC GCA GCGTATCAGGC          AATTTTTATAATTTA  91 91
        mhpA NONE
        mhpB NONE
SH02_RS05500 NONE
SH02_RS05505 NONE
SH02_RS05510 NONE
SH02_RS05515 1119119 .. 1119172 + -14.7  -2.57931   TAGGTCTGATAAGAC GCGTTAGCGTCGCATCAGGCA-TC TGCGCAC GACTGCCGGATGCGGCGTGAACGC CTTATCCGGCCTACG 100 141
SH02_RS05520 1120858 .. 1120880 +  -4.1  -3.53091   GCGTTTACAGGTATA           CTCGCTAAA AATTA TTCAGCGGG           TTTGGAAACAAAGAT  52 91
SH02_RS05525 1121531 .. 1121569 +  -9.5  -2.76583   CGGATAAGGCGTTCA  CGCCGCATCCGGCA-GTC GTGC GCCATGCCTGATGCGACG   CTTTGCGCGTCTTAT  70 123
SH02_RS05555 NONE
SH02_RS05560 NONE
        tauA NONE
        tauB NONE
SH02_RS05585 NONE
        tauD 1132818 .. 1132855 +  -6.3  -3.85698   AGAGGGTTAGGGTGA   GGGGGCGTTCACC-GT ACTTTCA ACAGGTTAACTCCCCC   TTTCTGAGAGGAAAC  65 75
SH02_RS05605 1136142 .. 1136171 +  -3.6  -3.01712   AGTACTGGCCTCCAC      GGTCCGTGTGAACG ATAA CGTTC-CG-GGGCC       TCTTACGCCGCCACA  46 268
SH02_RS05620 1138584 .. 1138607 + -15.4  -3.14132   ATTTAATCTAAATAA          TGCCCGTCAA GGAT TTGACGGGCA           TTACTGCAAAGGACG 100 69
SH02_RS05625 1139259 .. 1139286 + -11.4  -3.07816   AGTATTAATCAGGAC        GCGGGGAT-AACC AAC GGTTTATTCCCGC        TTAGCTCGGTCACCA  84 33
SH02_RS05635 NONE
SH02_RS05640 NONE
SH02_RS05645 1143418 .. 1143431 +  -2.3  -4.08767   GCATTGCGATATTTT               CCGCT AAAC AGCGA                TTTTGACAGGGTGAA  56 355
SH02_RS05655 1144093 .. 1144115 +  -6.3  -3.49886   GTGAAGCCAGGCAGG           GTGTTGATC TCGTT GATCACCAC           TTCGTTCTCTGGGGT  58 191
SH02_RS05665 1145304 .. 1145322 +  -5.4  -3.27298   GAATATATTTCATAA             CTTTTATT TAT AATAAAGG             TTGATAATTAAAAGC  55 3
SH02_RS05670 1145811 .. 1145825 +  -4.2  -5.21459   AAAGTTGTCACGGCC               GAGACT TAT AGTCGC               TTTGTTTTTATTTTT  78 68
SH02_RS05675 1147289 .. 1147320 + -14.4  -5.63374   GGCTGAAATAAAACC      GCGCCCGGCAGTGA ATTT TCGCTGCCGGGTGG       TTTTTTTGCTGTTAG 100 30
SH02_RS05680 1147737 .. 1147770 +  -7.4  -2.87963   GATACCTGATAGTGC     TAACGGGTGAGCTA CGAAAA TGGCTCACCCGAAA      TATCATACTTCTGCC  59 39
        adrA 1149141 .. 1149160 +    -2  -3.87815   ATTTTTGCGGAACCC            ATTACCGC CTGA GCGGCAAA             TTTATACGCCTGGGC  54 226
SH02_RS05695 1150410 .. 1150426 +  -5.9  -5.64421   GGGGTGTATTGAGAT              TTTCACT TTA AGTGGAA              TTTTTTCTTTACAAT  95 91
        aroL 1151041 .. 1151051 +    -4  -4.08394   CCCTGGCACAGACGA                 TCAA TTG TTGA                 TTTTCGAGCGCCTAT  61 15
SH02_RS05705 NONE
SH02_RS05710 NONE
SH02_RS05715 1152216 .. 1152227 +    -3  -4.18018   CGGCTGGCTGCGGAA                TTAC TGGT GTAA                 TTTTGCGTGACAGCC  58 14
SH02_RS05720 1152589 .. 1152613 +  -6.3   -4.8667   CTATCTGTAATTCCT          CGCCTTCCCCT TGA ACGGGAGGGCA          TTTTTCTGAAATATC  80 31
SH02_RS05725 1153133 .. 1153152 +  -2.8  -3.53164   CTGCGCTAAAAATTA            TTGCTCGC CGTA GCGAATAA             TTATATGCCTGGTGT  48 86
SH02_RS05735 1155643 .. 1155653 +  -8.2   -4.4648   CACCTAATAACTCTC                 CGCC TTT GGCG                 TTTTGTAGTAACAAT  85 494
SH02_RS05755 1161955 .. 1161982 +  -7.6  -3.68962   CAACCCGCTTTTAAC        GCCTTGCTCATC GGAC GCAGAGCAGGGC         TTATGATTTCTTAAC  70 27
        phoR 1163333 .. 1163354 +  -9.5  -4.88918   CATCTTTTATTGCCA           TAAGCCAGT CGAT GCTGGCTTA            TTTTCTTTGCAGTCA 100 52
SH02_RS05765 1165054 .. 1165077 + -15.3  -5.64304   GAACATTTGTTTTAA          CCACGGGGC TGCGAT GCCCCGTGG           TTTTTTATTGTGTTG 100 47
        proY 1166498 .. 1166526 + -14.6  -3.03338   CCTTGCGTTCTGTAA        GCCGGTTCAGGA GGAAA TCCTGATCCGGC        TATTCCGAAAGTTAT 100 42
SH02_RS05775 1168586 .. 1168600 +  -5.6  -3.58533   TCCAGACGTGGGCGG               CGGCTT GCC ATGCCG               TTTAACACGTTCTGG  58 157
        queA 1170190 .. 1170214 +  -9.9   -2.9162   AGGCAATTAATGAGC          GCGTCGGGGAG TAA TTCCGCGGCGC          TGGTTTAAAACGTTG  73 12
         tgt NONE
        yajC 1171722 .. 1171736 +  -2.7  -2.93361   CCGTCCTGCCGAAAG               GCACC ATGAA GGCGC               TGTAATTAAAATTTT  43 6
        secD NONE
SH02_RS05805 1174623 .. 1174642 +   -10  -5.92337   CGTTGATGTTGAAAA            TCCCGGTC AGAA GATCGGGA             TTTTTTTTGATGTAT 100 50
SH02_RS05810 NONE
SH02_RS05815 1175221 .. 1175241 + -12.6  -4.30576   GTTAACAATCAGAAA            TGCCGGGA ATAAA TCCCGGCA            TTTTCATAATCAGAA 100 36
SH02_RS05830 NONE
        ribD NONE
        ribH NONE
        nusB 1179685 .. 1179725 +  -7.7  -5.43553   AAAAAGTGATATCCA GGCCGGTAGATTCACGGAA GACCG TTCCATG-ATC-GCCGGCC TTTTCTTTTTTACCT 100 32
SH02_RS05850 NONE
SH02_RS05855 1181237 .. 1181279 +  -6.2  -2.73829   TGTCGTAGTTGTGCA CCGATGCCTGATGTGACG CTTGTCA CGTCTCATCAGGCCTGGA CTCTTATTTAAATCC  55 33
SH02_RS05880 1187133 .. 1187156 + -15.4  -3.55444   AATTTGTGGTTTTTA          CGTCGCATCT GGTC AGATGCGACG           TTTGCCGCATCCGAC 100 39
SH02_RS05895 1189404 .. 1189444 +  -9.7  -3.58726   ATAAGCGTAGCGCAG  CAGGCAATTCGCCGCGTTT TTT ATGCCTGACGAATTGCCTG  TTCTATCTCAAAGCG  80 133
SH02_RS05940 1198906 .. 1198917 +  -5.8  -2.75343   GGAGCAGGAAGCATC                GCGT AAAA ACGC                 ATTTGCAACTGTCGG  53 20
SH02_RS05945 1199096 .. 1199117 +  -3.6  -2.66232   TCGACTCATAAAAGT           GATGCCGC TATAAT GCCGCGTC            CTATTTGAATGCTTT  44 13
SH02_RS05950 1200588 .. 1200611 + -12.4   -5.9873   TAAATTCGCACAAAG          GCCCGTCACC GCCA GGTGGTGGGC           TTTTTTTTGTCATGA 100 60
SH02_RS05955 1201428 .. 1201445 +  -4.7  -2.96274   TCGTAATTGATGCCA             GAGGCGC AACT GTGCCGC              TATACTTATCCAGGG  50 31
        clpX 1202856 .. 1202874 +   -11   -4.3623   TTAGTTAACCAAAAA             GGGGGGAT TTT ATCTCCCC             TTTAATTTTTCCTCT 100 59
SH02_RS05965 1205397 .. 1205426 + -13.6  -5.72616   CACTAATAAAAACAG       GGCTGGCAGGCT AATTCG GGCTTGCCAGCC        TTTTTTTGTCTCGCT 100 58
SH02_RS05970 1205881 .. 1205900 +   -10   -5.7827   GTGACGAAGTTCAAG            GGCGCATC TACT GATGTGCC             TTTTTTATTTGTATT 100 61
SH02_RS05975 1207957 .. 1207972 +  -8.2  -4.39571   GCTGTAACAAGAAAA              GGTCGC TTTC GCGGCC               TTTTCCATTTCTGAA  82 74
SH02_RS05980 1208467 .. 1208489 + -10.7  -2.96274   TTTTGCCAGACTGAA           GAGGTCATA CCAGT TATGACCTC           TGTACTTATAACAAC  79 62
SH02_RS05985 1209298 .. 1209324 +  -7.3  -4.21194   GGAGAAATCCGTTTC        GCAGACGCCAGT AATT AC-GGCTTCTGC         TTTTACCTGATACGC  72 401
SH02_RS06000 1212370 .. 1212385 + -11.8  -5.86332   AGATCCCTTCCAGCA              CCGGGC AATT GCCCGG               TTTTTTTTGCGTTGA 100 43
SH02_RS06005 NONE
SH02_RS06010 NONE
SH02_RS06015 1216576 .. 1216599 +  -8.9  -4.67038   GGTGCAAAAATGTAA          CGCACTGTG CACTGT CATAGTGCG           TTTTCATTTTCAAAC 100 62
SH02_RS06020 NONE
SH02_RS06025 1218391 .. 1218417 +  -7.3  -5.68023   AAGCACTGCAAAAAA        CAGCCGGACGGT TTTC ACC-TCCGGCTA         TTTTTTTAATTGTGA 100 42
SH02_RS06035 1220080 .. 1220107 +   -15  -2.71364   CAATATTAAGCGACG        TTAACCCTCTCC GCCC GGAGAGGGTTAG         TAGTTCCAGCGATAA 100 32
SH02_RS06045 1221607 .. 1221625 +  -5.2  -5.02074   TAGTGATTGATCATG             TCACGCAG CAA TTGCGGGA             TTTTTTCCGAGGTGA  80 485
SH02_RS06085 1230544 .. 1230561 +  -9.9  -2.51951   AACCCTGAATCTGAC             TCCAGGA TTTT TCCTGGA              CATTTTCGTCGTTGC  70 39
SH02_RS06090 1234461 .. 1234475 +  -9.2  -3.18681   CAGCGCATGGCGGCA               GCGTGC CAG GCGCGC               TTCATAGGCTTCCAC  67 466
SH02_RS06110 1235416 .. 1235431 +  -6.1  -3.04398   CAATTATTGCGTACA              GCCAG TACATT CTGGC               GTTTTCGAGCACAGG  56 60
SH02_RS06115 1236137 .. 1236161 +  -9.9  -3.09492   CACAAGATGTGCATT          CAGCCTCGCCG TTC TGACGGGGCTG          TGTTAGCATTACCCC  74 77
SH02_RS06120 1238147 .. 1238163 + -10.9  -3.25015   TCCGCCCCATTTGAT              CGTAAGC ACA GCTTACG              TTCGTCATCCTTAAC  81 27
SH02_RS06125 1238507 .. 1238520 +  -2.3  -2.64099   ATGCAGCTGCCGCCT               GGCTT TAAG ATGCC                GTTCTGATGCAAACC  40 5
        recR 1239141 .. 1239158 + -11.3  -2.55818   TTTTTAAGCAAACGA             GAGCAGG ATCA CCTGCTC              TCGCTTGAAATTATT  79 34
SH02_RS06135 1241122 .. 1241149 + -15.7  -5.50723   GGTTTCCTGATGTAA        TGCCGGATGAC CTTCGT GTCATCCGGCA         TTTTTCTTTTCATCA 100 31
         adk 1242037 .. 1242056 +   -10  -4.07885   TTATCAGCAATCTCA            GGCCGGAT ATTC ATTCGGCC             TTTTACAAAAACCTC  88 121
SH02_RS06145 1243164 .. 1243188 +  -5.7   -4.3129   GTAAAGAACTGAGCG         CCGTCG-CGA AGAGCC TCGTCGGCGG          TTTTCATCATCCGTG  70 50
SH02_RS06155 1245570 .. 1245599 + -12.1  -2.82803   ATCGTCGGTTCGTAG       GCCAGATAAGGCG TTCA CGCCGCATCTGGC        ATTTGGCTCTCGATG  83 44
        ushA 1250863 .. 1250874 +  -2.2  -5.24129   GGGGGCGTCGATAAT                CGTT GGCA GACG                 TTTTTTCTGCCCCAG  79 200
SH02_RS06185 1252862 .. 1252875 +  -8.1  -3.30124   ACCATTGCCTGATGC               GACGC TTAC GCGTC                TTATCAGGCCTACAA  66 206
SH02_RS06195 NONE
SH02_RS06200 1258000 .. 1258010 +  -3.2   -3.4298   GTATAACATCTCTCT                 GTGC GCA GTAC                 TTCCTGTATTATTGT  49 35
SH02_RS06205 1258693 .. 1258712 +  -2.1  -3.67792   CAAAACGTCGGCCAA            TCAGCTGC TGCCC GC-GCTGG            TTTAAATGACTATCG  49 196
SH02_RS06220 NONE
SH02_RS06225 1261487 .. 1261520 + -16.8  -2.81547   GAAGAAGAAATGATG     CGATGCCGGATGCG CAGCAT CGCATCCGGCGTTG      TGGTTCATGTGCCGA 100 28
SH02_RS06245 NONE
SH02_RS06250 1266968 .. 1266991 +  -6.7  -4.02653   TGAGAGTAAATAAGG          GGCGTTCTG GTTGAA TGGAACGCC           TTGTTTAAATTAATT  69 41
SH02_RS06255 NONE
SH02_RS06260 NONE
SH02_RS06265 NONE
SH02_RS06270 1273189 .. 1273203 +  -3.6  -4.38154   TTTTGTTGGTGAAAT               TAATGT TAC GCATTA               TTTTATAACAAATAT  63 192
SH02_RS06290 1277035 .. 1277045 +  -3.2  -4.18197   GAAAGTATTCCTGAA                 CAGG AAC TCTG                 TTTTGCGTGACGCCT  58 5
SH02_RS06295 1277961 .. 1277978 + -12.7  -5.40474   TAATGTCTGTCGCAT             CCCGCTC TGCG GAGCGGG              TTTTTTTGACAAAAT 100 38
SH02_RS06300 NONE
SH02_RS06305 NONE
SH02_RS06310 1281670 .. 1281683 +  -2.5  -5.67711   AAGATGTTGCTTCAG               TATTA AAAA TAATA                TTTTTATTTTATTTG  84 109
SH02_RS06315 NONE
SH02_RS06320 1284645 .. 1284665 + -10.4  -3.36671   ATCTGGCCCCTGCAA            TGCCCGTC CTTGC GGCGGGCA            TTCTCCGGTTAAGGT  78 40
SH02_RS06325 NONE
SH02_RS06330 1287199 .. 1287230 + -11.6  -2.93723   TATCGCATAAGAGTG      CAGTACTCATGCCG GATG CGGCATGAGTACCA       TATCCTTCCTGAAAA  83 69
SH02_RS06350 1292446 .. 1292459 +  -3.1  -3.60098   AATAAAAAACTGGCT               CGTTT ATTA GAACG                TTTGCAATAAGGGGT  51 2
SH02_RS06355 NONE
SH02_RS06360 NONE
SH02_RS06365 1295485 .. 1295499 +  -7.1  -3.30124   ATTTGTGCCTGATGC               GACGC TTGAC GCGTC               TTATCAGGCCTACAA  64 56
        cysS 1300130 .. 1300153 + -16.8  -3.46602   GTAATTGCGCTATTG          CCGGATGCGA GTTT TCGCATCCGG           TTATCGTCTGCGCCA 100 37
SH02_RS06410 1302877 .. 1302896 +  -5.1  -2.75498   ATGAGATATGAATAA            TCAAAAC CACGTT GTTTTGA             ATTATATATCACGTC  50 26
SH02_RS06415 NONE
SH02_RS06420 1306441 .. 1306454 +  -3.9  -3.63515   AAATTATCAATAAGA               TAATC TGCA GATTA                TTATTGGCGATGGCA  53 44
        fimH NONE
SH02_RS06430 1308380 .. 1308394 +  -2.1  -4.08216   CTTTCACTGTGCTCT               GGATT TGTTT GATCC               TTTTCAGGAAGGTAA  56 438
SH02_RS06440 1309348 .. 1309369 +  -7.2  -4.13341   ACAGGCGGTATCGTT           CAGCGCCA CACCAA TGGCGCGG            TTTGATTTGCTCTCT  70 452
SH02_RS06455 NONE
SH02_RS06460 NONE
SH02_RS06465 NONE
SH02_RS06470 NONE
SH02_RS06475 1312405 .. 1312430 +  -4.7   -2.8547   CAAACTGTAGTACAA         TTCTCTCCAGT TTGA ACAGGAAAGAA          TATGCTATGAACCCT  49 61
SH02_RS06480 1312800 .. 1312825 + -10.5  -3.41907   AACGACTAAAATATG         GAGGCTCTTAT ATTT ATATGAGCCTC          GTTTTATGCTTTTTG  80 56
SH02_RS06485 NONE
SH02_RS06490 1314646 .. 1314659 +  -2.3  -4.39426   TAATTACTTTGTTTG               CTCCC ACAA GCGAG                TTTTGTACGGCTGTA  58 121
SH02_RS06495 NONE
SH02_RS06500 1316438 .. 1316466 + -11.8  -3.32844   ACACGGCATAATTAT        GTCACCGGAG CCTGAACAA CTCCGGTGAC        TTCTGCGCTAAACGG  89 90
SH02_RS06505 NONE
SH02_RS06510 1317191 .. 1317212 +  -2.9  -2.71712   AATGGTTGCGACTGG           CAGCAAGGA GGAG TCATGGCTG            ATTTGAGAAAAGCAG  41 3
SH02_RS06515 NONE
SH02_RS06520 NONE
SH02_RS06525 NONE
SH02_RS06530 1318600 .. 1318635 + -14.2  -4.77036   CTTGAGGGAGCCACT    TATATGTTG-GGGAGGC AAC GCCTCCCGCAACATATC    TTTTTCGTAATCAGA 100 164
SH02_RS06535 1319022 .. 1319035 +  -3.7  -3.93664   GGGTGCTCCACCCTG               GCCCG GATG CTGGC                TTTCATGTATTCGAT  58 226
SH02_RS06550 1321185 .. 1321197 +  -4.1  -4.31164   GAGGTTGCCCCGTAT                TCAGT GTC GCTGA                TTTGTATTGTCTGAA  63 400
SH02_RS06560 1321476 .. 1321534 + -16.3  -4.06182   AAAATACCCCCTGAA AAGAAAGGAAACGACAGGTGCTGAAAG CGAGC TTTTTGGCCTCTGTCGTTTCCTTTCTC TGTTTTTGTCCGTGG 100 83
SH02_RS06575 NONE
SH02_RS06580 1323613 .. 1323645 + -11.4  -3.16564   ATCATTGGGATTATG     CCGCAGCACG-TCTT AAGC AAGAACATGCTGCGG      TTGGATGCTATTTTT  84 40
SH02_RS06590 1324709 .. 1324725 +  -5.2  -2.99268   TTGTTTGATGTTATG              CTTTTG CGCCC CAAAAG              GTTGTTTAGATGTAT  52 98
SH02_RS06595 1326135 .. 1326165 + -11.8  -4.43309   TTGAAATGGCTAGTT       ATTCCCCGGGGCGA TTT TCACCTCGGGGAAA       TTTTAGTTGGCGTTC 100 229
SH02_RS06640 1338528 .. 1338561 +  -3.7  -3.10905   CGTCTGCGTTCGCTC     ACCCCAGTCACTTAC TTAT GTAAGCTCCTGGGGA      TTCACTCGCTTGTCG  48 79
SH02_RS06645 NONE
SH02_RS06650 NONE
SH02_RS06655 NONE
SH02_RS06660 1344881 .. 1344907 + -16.7  -5.65513   GTCAACCATCCGAAA         CCGCTCTCATC CATTC GATGAGAGCGG         TTTTTTTAATTACTG 100 70
SH02_RS06690 1349270 .. 1349311 +  -8.2  -3.65046   ATTTCTATCAACCCT GGGGCTGCCACTCCAAA CCCGAACAA TTTGGA-TGGTAGTCCC TTCTTCGCATGGAGG  73 250
SH02_RS06695 1349509 .. 1349530 +  -4.4  -3.52073   TGTGCGGGGAGTAAT           CCCATAAG CGCTAA CTTAAGGG            TTGTGGTATTACGCC  52 45
SH02_RS06700 1350702 .. 1350728 +    -8  -3.14683   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  63 49
SH02_RS06715 NONE
SH02_RS06720 NONE
        entF 1359558 .. 1359584 +  -8.2  -5.85425   AATATTATTTATAAA         CCCATAATTA CAGAAAA TAATTATGGG         TTTTTTATTTGTTTG 100 44
SH02_RS06730 1360881 .. 1360891 +    -4  -3.66356   TGATGGCAGACCACT                 TAGT TTA ACTA                 TTTGCGGTTGAAGGT  54 18
SH02_RS06750 1365369 .. 1365398 +  -8.7  -2.87132   CCAGCATCTGCCCTT       GTGCTGAT-TCTGG CGT CCAGAGATTGGCAC       TGTGTGCAGCGGCAG  61 343
SH02_RS06760 NONE
        entE NONE
SH02_RS06770 NONE
SH02_RS06775 NONE
SH02_RS06780 NONE
SH02_RS06785 1373619 .. 1373651 +  -9.8  -3.34715   TTGATAGCATTTGTA     G-GCCGGATAAGGCG TTCA CGCCGCATCCGGCAC      TCTTTCAGCAACATG  76 144
SH02_RS06790 1374155 .. 1374173 +  -6.6  -3.53012   TAGGCGACTTTGGTG             CCGTGGAG AAA CTTCTCGG             TTTGCGGCAGCACGG  61 300
SH02_RS06800 1376275 .. 1376309 +  -7.2  -3.90112   CCAGGCGCGGGAATA     TTGACGGTCGGCAA ACAACTC TTGCAGGCCGTTAA     TTTGCTTCAGGCGCA  68 53
SH02_RS06825 1381147 .. 1381166 + -13.6  -4.63218   AATTCACCTAATTCT            TCGGGTGC TGCG GCACCCGA             TTTTCTTCCCCGCAC 100 163
SH02_RS06830 1382850 .. 1382873 + -13.1  -5.27923   ACCTGCAATTGCTTA          GCCGCCGGG GTCAAA CCTGGCGGC           TTTTTTATGGCATTA 100 56
SH02_RS06840 1385032 .. 1385043 +  -5.8  -3.31263   CATCCTCTGGGCAAA                GCGA GTTA TCGC                 TTGTGCAGATGGGAT  57 230
        dpiB NONE
        dpiA 1396053 .. 1396075 + -13.4   -2.6955   GGGTGACATGATAAA           GCCGGAGGAA ACT TGCCTCCGGC           ATTACTATTTACTTG  93 35
        pagP 1398751 .. 1398767 +  -7.3  -4.02302   GGTGTACTGGTAACC              GACACAG CAT TTGTGTC              TATTTTTCATGTAAA  72 158
SH02_RS06915 1399026 .. 1399042 +  -9.4   -5.9663   AGCAAGAATTCAAAA              CCCGCT TAATC AGCGGG              TTTTTTTTGGTCTTT 100 49
SH02_RS06925 1400297 .. 1400310 +  -6.7  -3.91801   TAAACAACCGTCGCT               TTGCG CCGC CGCAA                TTATTATGATGTTTT  69 3
        tatE 1400698 .. 1400715 + -11.3  -5.24129   GTTCGATACAAAAAA             CCCGCTT CAAA AAGCGGG              TTTTTTATCAGACAG 100 72
SH02_RS06945 1403401 .. 1403422 +  -5.1    -3.494   CAACATAGACACCTG           GCGCGTC AGCCCGAG GATGCGC            TTCTATACCCAGTTC  56 340
SH02_RS07015 1417154 .. 1417172 +   -11  -3.30039   GATACAGGTCGAGAG             CCTGTCGG AGA TCGACAGG             TCTTCCTTCTCCGTA  76 178
SH02_RS07025 NONE
SH02_RS07030 1420555 .. 1420571 +  -4.4  -3.61178   GCTTTACGGGTGTCG              GGTTTG ACCCC CAGACC              TTTGAGGTAGATCCA  55 237
SH02_RS07040 NONE
SH02_RS07045 1423179 .. 1423222 + -18.8  -3.91144   ACGATGTGTTTTTTG CGCCGATGCCGGATGCAGCG TTTA CGCCGCATCCGGCAGCCGTG TTTATGGGATCTCAA 100 40
        ubiF 1437905 .. 1437920 + -10.4  -5.22312   GCAGAAAAGCAAAAA              GCTCGC CGAA GCGAGC               TTTTTTAATGTGGCT 100 153
SH02_RS07175 1447442 .. 1447464 +   -12  -6.15828   ATCCAACAATGACAA           GCGGTGGAGA TCT TCTCTGCCGC           TTTTTTTTTCATCAA 100 76
SH02_RS07180 1449459 .. 1449475 + -10.8   -5.4588   GCAAACAATCCAAAA              CGCCGC GTTCA GCGGCG              TTTTTTCTGCTTTTC 100 226
        chiP 1451246 .. 1451275 +  -7.8  -3.59627   CCATCTTCTGATGCC       CGACGCGGCAGGT TTTGT GCCTGCCGCA-CG       TTTGAGGAATTTGCT  70 30
SH02_RS07190 1451664 .. 1451681 + -11.3   -4.5442   CCCTTGCATAAAAAA             GCCAACC CGCA GGTTGGC              TTTTCTCGTTCAGGC 100 72
SH02_RS07205 1452669 .. 1452685 +  -6.5  -2.78495   TGGTGCCCAATGCGT              CGCAGAA ATA TTCGGCG              TAATCTTCCTGGTCA  51 248
SH02_RS07225 NONE
SH02_RS07230 1456718 .. 1456737 + -11.4   -5.1287   CATTTAATAAAAAAA            GGGCGGTC GCAA GATCGCCC             TTTTTTACGTATGAC 100 44
SH02_RS07235 1457456 .. 1457470 +  -2.8  -3.80862   ACATGTCTTATTGCG               TGAATG TTT CTTTCA               TTTGATACTGCATTT  52 74
SH02_RS07260 1462499 .. 1462518 +  -6.4  -3.95584   TGTTTAAGATAAAAA            GCCGTATT TATT ATTACGGC             TTTAATTAATAAAAG  67 183
SH02_RS07295 1470868 .. 1470889 + -17.3  -5.36441   TGAATACATTGAAAA           CCGCCAGCG GAAA CGCTGGCGG            TTTTTTGTATCAGGA 100 52
SH02_RS07300 1475261 .. 1475272 +  -4.4  -2.80622   TTATTAGATTTGTAT                TCAC CGGA GTGA                 TGTAATGAAATATAT  46 9
SH02_RS07305 NONE
SH02_RS07310 NONE
SH02_RS07315 1477889 .. 1477903 +  -2.1  -3.37796   TACTTATTGTCTAAA               GCTGT TTTTC ATAGC               TTATACATGATCAAA  45 194
SH02_RS07320 1478269 .. 1478283 +  -2.1  -3.37796   TCCTTATTACCTAAA               GCTGT TTTTC ATAGC               TTATACATGATCAAA  45 94
SH02_RS07325 NONE
SH02_RS07330 1480422 .. 1480437 +  -4.7  -3.17392   GCTTTCGTAAATTTG              TCCTG CTACAA CAGGA               TTAACTTCACAAATA  51 93
SH02_RS07335 NONE
SH02_RS07340 1482585 .. 1482600 +    -6  -4.02132   GGCCTATTAAGACTC              CAGCGC CAGC GCGCGG               TTTCTGAATTTCAGC  66 184
SH02_RS07350 1485094 .. 1485106 +  -2.6  -2.94076   TCAGAGGGATCGAAA                GTGC AACGA GCGC                GTTGTTATCTGATAG  43 48
SH02_RS07355 NONE
SH02_RS07360 NONE
SH02_RS07365 NONE
SH02_RS07370 NONE
SH02_RS07405 1496279 .. 1496289 +  -5.4  -4.32436   CTTCATAACTTTTAC                 GCAT TAT ATGC                 TTTTCCTGGTAATGT  68 162
        sdhC 1497046 .. 1497059 +  -3.1  -2.78384   CGTGCTTTCACTTCT               CGCAGG AGT CCT-CG               TATGGTAAGCAACGC  43 4
        sdhD NONE
        sdhA NONE
        sdhB 1499926 .. 1499972 + -10.7  -2.57931   TAGGCCTGATAAGAC GCGCAAGCGTCGCATCAGGCA ACCAG TGCCGGATGCGGCGTGAACGC CTTATCCGGCCTACA  76 45
SH02_RS07430 NONE
SH02_RS07435 NONE
SH02_RS07440 1504313 .. 1504326 +  -8.1  -3.30124   ATTGAAGCCTGATGC               GACGC TGAC GCGTC                TTATCAGGCCTACGG  66 98
        sucC NONE
SH02_RS07450 1506626 .. 1506643 + -11.3  -5.39755   GGTTTCGACATGGTT             GGCCATC GTAT GATGGCC              TTTTTTGTGCTTATC 100 101
SH02_RS07460 NONE
SH02_RS07465 NONE
SH02_RS07470 1512351 .. 1512367 +  -5.3  -2.55213   TAACCCTGGGTGAGT              TAATTAT AAT ATAATTA              TAAGTTAACTAAATG  49 12
SH02_RS07475 NONE
SH02_RS07480 NONE
SH02_RS07485 NONE
SH02_RS07490 1516124 .. 1516149 +  -7.6  -4.63184   AATTCTCTTTAAAAA         ATTATGGGCC GCTCCA GGCCCATAAA          TTTTTACGCTCCCTT  86 46
SH02_RS07495 NONE
SH02_RS07500 NONE
SH02_RS07505 NONE
        tolA 1519146 .. 1519159 +  -2.3  -2.70544   GGTCAACATCAGGCA               CCGGT TGCC ACGGG                GTTCTGGTAGTTTTG  40 63
        tolB NONE
SH02_RS07520 1521095 .. 1521106 +  -2.2  -2.52896   GGTTTACTAAGAGAA                TTGC ATGA GCAG                 TAACTTCAGACATCA  39 31
SH02_RS07525 1521902 .. 1521929 + -10.7  -2.79302   GTAATGCATAACACA        CGACCAGAAGT CGCATT ATTTCTGGTCG         TGTCGTGCGAATCAT  77 37
SH02_RS07530 1522231 .. 1522243 +  -6.3  -3.46602   CTGCACGACCCACCA                CTAAC ATA GTTAG                TTGTAGTATCCAGCG  61 126
SH02_RS07535 1522336 .. 1522349 +  -2.3  -3.10409   CGATCCCGTCATCAC               CCACC ACCG GGTCG                TTAGCTCAGTTGGTA  43 20
SH02_RS07540 1522511 .. 1522531 +  -5.4  -3.06302   AGTCATCCTGCACGA            CCCACC ACTAATGAC GGTGGG            TTCGGTGGAAGTAGT  52 117
SH02_RS07545 NONE
SH02_RS07550 1522856 .. 1522880 +  -3.6  -2.56596   AGTAAAAATCTTTCA         GGTAAC-ACCC GTAT GGGTCGTTAGC          TCAGTTGGTAGAGCA  44 158
SH02_RS07555 1522940 .. 1522957 +  -4.1  -3.21099   CGAATCCTGCACGAC             CCACC AATTTAAA GGTGG              TTACTGGTAGAGAAC  49 20
SH02_RS07560 1523156 .. 1523186 + -14.9  -2.90212   GCACGACCCACCAAT       GTAAAAAAGCGCC CTAAA GGCGCTTTTTTGC       TATCTGCGATACTCA 100 28
SH02_RS07565 1524641 .. 1524654 +  -6.7  -3.53224   ATAACGAATAATAAG               GCGTA ACGT TACGC                TTTGGGGGAAAGATG  63 37
SH02_RS07570 1525478 .. 1525503 +  -2.5  -3.13299   GAATGGTGGCGTGCT         CAATCTGATAG TGAT CCATCAGGTAG          TGTTGGATCTGATCC  43 117
SH02_RS07590 1528299 .. 1528319 +  -8.3    -4.208   GTTAGCAACAAAAAA            GCCGACT CACTTGC AGTCGGC            TTTCTCATTTTAAAC  79 138
SH02_RS07630 1536433 .. 1536450 +  -8.4  -5.35224   CATTGATTCCCTGAA             TGCCCG CTTAGT CGGGCA              TTTTCTTTTTCTCAA 100 35
        modA NONE
        modB NONE
        modC 1539470 .. 1539490 +  -4.6  -3.53012   GGGCGAACTTCCATA            CGGCGTTA ACTTG TTGCGCCG            TTTCAGCCAGAGAAG  53 382
SH02_RS07655 1541095 .. 1541118 + -15.3  -3.10053   TAACCGCTGATTTAC          CCGGCGCAG TCTCTC CTGCGCCGG           TGTATTAACCTATCT 100 38
SH02_RS07665 NONE
SH02_RS07670 1544965 .. 1544988 + -13.2  -2.89055   TCCATTTATTATCTT          TCTGCGCACT TCAC GGTGCGCAGA           TATCTGGAGCATTTG  91 169
SH02_RS07675 1547287 .. 1547315 + -11.8  -2.73468   CCATGTGAATGTAGG        TCGCATTCGGCA CTTAT TGTCGGATGCGA        TGCTTGCGCATCTTA  83 47
SH02_RS07695 NONE
SH02_RS07700 NONE
SH02_RS07705 NONE
        bioD 1554840 .. 1554855 +  -3.2  -4.52589   TTGCTTTGGGGATAA              C-CCGGT AAG GCCGGAG              TTTTATCTCGCCACA  63 417
SH02_RS07715 1557139 .. 1557196 + -15.5  -3.12482   GCAATATATTGAATT TGCGCGGTTTGTAGGCCGGATAAGGCG TTCA CGCCGCATCCGGCATAAACAACGCGCA CTTTGTCTTCAATAG 100 116
        moaA NONE
SH02_RS07735 NONE
        moaC NONE
        moaD NONE
        moaE 1561257 .. 1561287 +  -3.8  -3.55761   CTGGTAGTTTTTTGT       TAGCCGGATAAGGC ACC GCTGCGTCCGGCAA       TTTCACCGCTCAGTA  51 34
SH02_RS07755 1562109 .. 1562127 +  -8.1  -5.84381   TTTTCACCATCACTA             TCCCGGC CATGT GTCGGGA             TTTTTTTCTTACTAA 100 45
SH02_RS07760 1563402 .. 1563412 +  -2.4  -4.25074   CGAATTTCCATGAAG                 GCAG CAC CAGC                 TTTTGCCCTTTGATG  58 420
SH02_RS07780 1566933 .. 1566943 +  -8.2  -3.57263   GTGGCGACAATTAAC                 GCCG GTA CGGC                 TTTGCCGATGAAGAT  69 417
SH02_RS07810 1573858 .. 1573887 + -13.5  -2.71712   TGCATGCTTTTGTAG       GCCGGATAAGGCG TTTA CGCCGCATCCGGC        ATTTCACAACAAGCA  93 146
        dinG 1576704 .. 1576717 +  -9.5  -3.25223   AAAACGAAATCCCCA               CGCCG TCGG CGGCG                TTAATGATGTGAGTC  74 8
SH02_RS07825 1577723 .. 1577746 + -12.5  -4.07568   TTAATTCTTTTCTCA          GCCGGATGA GCCATG TCATCCGGC           TTTTACCCCACCGCA 100 37
SH02_RS07830 1579102 .. 1579148 + -15.1  -2.62463   TAGGCCTGATAAGAC GCGGTAGCGTCGCATCAGGCA TCTGT TGCCGGATGCGGCGTAAACGC CTTATCCGTCCTACG 100 190
SH02_RS07860 1585003 .. 1585014 +  -4.4  -4.32201   CCAATAATCAGCCCG                CGAA TTTC TTCG                 TTTTCCATTAATTCC  67 269
        ompX 1592482 .. 1592511 + -10.1  -4.70879   TCACTTTGGTGATAT       AAAAAATCCGCCT CTCG GGGCGGATTTTTG        TTTTTAAGGTTTCGG 100 41
SH02_RS07915 NONE
SH02_RS07920 1596285 .. 1596303 +   -11  -4.59424   CTGGCAAATAAAAAA             GGCGGATT ATG AGTCCGCC             TTTTGCTTTAAGTTT 100 44
SH02_RS07930 1599400 .. 1599410 +  -8.2  -4.62069   CGCGGGAAGTCGCCC                 GGCG ATG CGCC                 TTTTTCCAGTGCGGC  88 369
SH02_RS07955 1605838 .. 1605858 + -11.1  -3.30124   TCATAAATTGCTGAT            GACGTGGCG GAG TGCCGCGTC            TTATCAGGCCTGGAG  81 58
SH02_RS07970 NONE
SH02_RS07975 NONE
SH02_RS07980 NONE
SH02_RS07985 NONE
SH02_RS07990 1614350 .. 1614362 +  -3.4  -2.58398   CCTCACAGGAAATTA                TTGC CCTAA GCAA                GTGTTGTAACTTTCT  42 73
SH02_RS07995 NONE
SH02_RS08000 1618176 .. 1618201 + -13.3  -2.60244   TAATCATTATTCGCA         GGCCGGACAAA TGAT TTTGCCCGGCC          TGAATTAATTAAACC  93 38
        bssR 1620139 .. 1620159 + -12.6  -3.48703   AGGCCTGAAAACTAA            GGGGGAGA AAGCG TCTCCCCC            TTCATGTTTAAGTTT 100 33
SH02_RS08015 1621712 .. 1621733 +  -2.9   -3.3581   GCTTCCGCACGACGT           GCCGGTG AGTCGATC CACAGGC            GTTTTTGCCCGTACT  47 380
SH02_RS08025 1623441 .. 1623465 + -13.6  -3.39862   TTAATCTTCTGATAA          CCGGATGGCG CGAAA CGTCATCCGG          TTATACGTCATTAAT 100 37
SH02_RS08040 1626411 .. 1626437 +  -8.7  -3.37464   CGAAGGGTAAAAAAA         TGCCTGACTGC TTTGT GCGATCAGGCA         TTCTCGAATTAATGG  71 31
SH02_RS08060 1629577 .. 1629595 +  -7.4  -3.29043   ATTAAGACTGATGCC             CTGCGGAA AAG TTCTGCGG             TTGTGCAAAAAAATT  64 143
SH02_RS08070 1631968 .. 1631984 +  -9.4  -3.29511   GAAAAAATCAGTAAA              GCCCTC AACGC GAGGGC              TTGTCAGACGATCAG  74 27
SH02_RS08080 NONE
SH02_RS08085 NONE
SH02_RS08090 1634351 .. 1634362 +  -3.6  -2.78216   TACGACAGAATATTG                CCTG AAAA CGGG                 TGGTTAGTCGCAATC  45 7
SH02_RS08095 1634941 .. 1634984 + -11.8  -3.65046   TCCACTGATAACTCC TTTCG-AGCACGCAGTCGCTG GTG CAGTGGCTGCGCGCTGCAAAA TTATCTGCTGTTTTT  93 33
SH02_RS08100 NONE
SH02_RS08105 1636454 .. 1636470 +    -3  -3.05384   CAATTCGCACCATTA             TG-GTGC GCTT GCACACA              TTCAATGCCGGAGAG  44 83
        potG NONE
SH02_RS08115 NONE
SH02_RS08120 1639459 .. 1639483 + -12.2  -4.25104   GCCAACCTGGCTACA          TAATGCCGCG CATGT CGCGGCATTG          TTTTCATGGAAGACG 100 55
SH02_RS08125 NONE
        rumB 1641320 .. 1641333 +  -9.5  -3.98172   TGTCATCAGTCTCAA               GCCGC GGTT GCGGC                TTTCTGAATCTTACT  83 200
SH02_RS08165 NONE
SH02_RS08170 1647376 .. 1647404 +    -8  -4.30978   TCAAAATTCAACTTG        GAGACGCCGTAG TGGGT CAGCGGCGGCTC        TTTTGCTGACTTGCG  78 158
SH02_RS08220 1659653 .. 1659702 +  -6.6  -5.14965   AACATCGTGGCCATT TGTGGCTGAATAGCGTCGAGCATCT CAT AGC-GC-CGACGGTATTCAGCC-CG TTTTTTACTGGCGAT  88 47
SH02_RS08230 NONE
SH02_RS08235 1663809 .. 1663829 + -12.6  -4.35926   TTTTTGAGATAAAAA            TGCCAGCC GATCG GGCTGGCA            TTTTGCCTTTAGGAT 100 41
        clpS NONE
        clpA 1667066 .. 1667093 +   -15  -5.38054   AGGTAGGTTGGTCAA        GTCCGTAATCTC GAAA GAGGTTACGGAC         TTTTTGTTTATGGGG 100 51
SH02_RS08285 1674646 .. 1674675 + -13.7  -2.75577   TGTTAATCCATACAG       CAACAGTACTGGG GTAA CCTGGTACTGTTG        TCCGTTTTAGCATCG  93 82
SH02_RS08290 1678726 .. 1678761 +  -9.6  -2.89564   TAACTAATGCATCGT    ATGCCGGATAAGGCGC GGTA GCGTCGCATCCGGCAC     TCTATCAACTGAAAA  70 38
        lolA 1679491 .. 1679512 +  -2.3  -3.37634   GTAAGTAGAGGCACC           TGAGTGAGCA ATC TG-TCGCTCG           ATTTTTCGGATAATA  45 33
SH02_RS08300 1680840 .. 1680854 +    -5  -3.48053   ACGCTACCGTTAATG               TTATCG TTG CGGTAA               TGTTGTTACTGTATC  55 28
SH02_RS08305 1682246 .. 1682259 +  -9.5  -5.72616   TTCTGAATCTAAAAA               GCGCC TGCG GGCGC                TTTTTTTGTCTCCCT 100 51
SH02_RS08310 NONE
SH02_RS08315 NONE
SH02_RS08320 1686406 .. 1686423 + -10.5  -4.14927   AGCTAATCATAACAA             CCGGGGT TTCG GCCCCGG              TTCTCTTTTATTTCT  91 35
SH02_RS08330 1688530 .. 1688561 + -13.2  -5.82036   TGTAAATGAATTCAA      GCAGAGTGTGAA CTTACTGT TTCACACTCTGC       TTTTTTGTTTCTTCT 100 36
SH02_RS08335 1690318 .. 1690342 +    -8  -3.14344   CACATTCTAAACGAC         CAGTATCAAGG TACT CCTTGAT-CTG          TTCATAGAGCAGATA  61 184
SH02_RS08345 1691804 .. 1691827 + -12.5  -3.53761   GCGCGGAATAAAAAA          GCGGCAACT CAATAA AGTTGCCGC           TTTACGGGGAAATTA 100 71
SH02_RS08370 1699096 .. 1699123 +  -4.8  -3.14132   AGGAATAATGTATTA        CCTGTGGTCG CAATCGAT TGACCGCGGG         TTAATAGCAACGCAA  51 167
SH02_RS08375 1700261 .. 1700281 + -12.6   -5.4659   GAAATTTTGCTTAAT            CCCCACAG CCAGC CTGTGGGG            TTTTTATTTCTGTTG 100 45
SH02_RS08380 1701639 .. 1701657 +  -8.8  -5.75945   CTTTCTTTATCAAAA             CGTCGGCA CAT TGTCGGCG             TTTTTTTTCGGACCT 100 69
SH02_RS08385 1702644 .. 1702664 +  -8.9  -3.66784   AACGATTTGTGGCGT            CGGCGCGTA TAA TGCGCGCGG            TTATGTTAACGGTAC  75 141
         cmk 1703405 .. 1703429 +  -4.9  -3.06696   CGAATTTGCAGTACC          CCCGTTGCAAT GGA ATGACAGCGGG          TATGTTAAACAACCC  50 46
        rpsA 1705254 .. 1705271 + -14.1  -3.18264   GTAATCAAGCACTAA             GGGCGGC TACG GCCGCCC              TTAATCAATGCAGCA 100 111
        ihfB 1705636 .. 1705664 + -13.3   -3.0636   CTCAAACTTGAACGA        GAGAAAAGCACCT GTC GGGTGCTTTTTTC        ATTTCTCTAATCTGG 100 49
SH02_RS08405 NONE
SH02_RS08410 NONE
        lpxK 1710856 .. 1710868 +  -4.7  -3.20901   TCTGGCAACTAGTTA                CGCCG CGG CAGCG                TTCGATTGATGGAGT  51 29
SH02_RS08420 NONE
SH02_RS08425 NONE
SH02_RS08430 1713138 .. 1713151 +  -5.3  -4.35675   ATTTTGGGAGGAGTG               TCGTA CCGT TACGA                TTTTCCTCAATTTTT  68 65
SH02_RS08435 1714135 .. 1714151 +  -3.6  -4.09685   AATCACTCTTGCCGT              GGCTCG CCTGA CGAACC              TTTTAGCCACTGCCA  60 15
SH02_RS08445 NONE
SH02_RS08450 NONE
SH02_RS08455 NONE
        mukB 1722293 .. 1722310 + -12.7  -5.26119   GCGAGTTAAAATTAA             GGCGGCA GCAA TGCCGCC              TTTTCTTTTTCCGAA 100 32
SH02_RS08465 1724460 .. 1724476 +  -5.7  -3.13432   GCGATTCTCTGCAGC              CCCCGTC ACT GCTGGGG              TTGAGTCATCTTGAC  55 91
SH02_RS08470 NONE
SH02_RS08475 1725984 .. 1726001 + -12.7  -3.75772   TTGTCATCAGTCTCA             GCCCGCT TTTC AGCGGGC              TTCATTGTTTTTAAT 100 212
SH02_RS08485 1727455 .. 1727469 +  -2.1  -3.25719   ACGCCCAGTTTGTTG               TCAGA ATCGA TCTGG               TTGATGATGTAGTCA  43 102
        pepN 1734739 .. 1734774 + -13.3  -2.77431   CACTGGCTTGATAAA    TAACCGAATGGCGGC AATAGC GCCGCCATTCGGGGA     ATTTACCCCTGTTTT  93 30
SH02_RS08535 1739939 .. 1739960 + -15.9  -2.62118   TTTTATTAATTAGTA           CCCCTCCAG TGTT CTGGAGGGG            ATATTCATATTTTTT 100 57
SH02_RS08540 NONE
SH02_RS08545 NONE
SH02_RS08550 NONE
SH02_RS08555 NONE
SH02_RS08560 NONE
SH02_RS08565 1746166 .. 1746180 +  -2.8  -5.75342   GCCCTGAAACAGGTT               CGGAAA ACG TTTGCG               TTTTTTTTGCCGCAG  86 34
SH02_RS08570 1747300 .. 1747343 + -10.6  -3.22448   CTTCGAATTCCTCTT TATAAGATAATCAGGGCT TTATTTTC AGCCCTGGTTGTTTTATA TTCATCGCTGTTGCT  77 47
SH02_RS08575 1748173 .. 1748189 +  -4.4  -3.90922   GATTTTCTAATTGCT              CCAGCA ACACC TGTTGG              TTATTTCCACGAAAT  60 204
        rlmL NONE
SH02_RS08590 1753451 .. 1753465 +  -2.8  -2.69799   TATCAGGCATGAAAA               CCAACA CTT TGTTAG               TCATCTGTAAAATAG  41 105
SH02_RS08595 NONE
SH02_RS08600 NONE
SH02_RS08605 1756982 .. 1757008 + -10.8  -5.76633   GATTTGTAAATATAA         CCGTCTCCGGTA TGT TGCCTGAGGCGG         TTTTTTTGTCTCTAA 100 48
SH02_RS08610 1757399 .. 1757425 + -15.2  -2.51207   TCTGTCTCTTTAAAA         AGAAACCTCCGC ATT GCGGAGGTTTCG         CCTTTTGATACTCTG 100 42
SH02_RS08625 1760477 .. 1760492 + -11.8  -4.82901   TAAAGGCAAAAAAAA              CCCCGC AGCA GCGGGG               TTTTTCTACCAGACG 100 65
SH02_RS08635 1762210 .. 1762239 +  -3.5  -3.14881   CCGACTCAGTTTTTG       TTGCGGTGTTAAC CAGA GTTGCCAGCGCGA        TTGCTGACCGAGTTG  47 309
SH02_RS08645 1763246 .. 1763259 +  -3.1  -3.11634   TACGCCGAAACAGGA               GTTTC CTGC GGAAC                TTGAGTAATCTGGCG  46 4
        helD 1768147 .. 1768175 +    -6  -3.09327   CTGGATTATGAAGTC       TGCCG-TTGCCAC GTTG GTGGCGACCGGAA        TGTTCCATACCGTCG  53 147
SH02_RS08680 1769864 .. 1769891 + -17.1   -4.1673   TGGCCAAATAAAAAA        TCCCCGGAAGG CAAAAA CCTTCCGGGGA         TTTGTTCAGGGATTA 100 30
SH02_RS08695 1771903 .. 1771934 +    -8  -5.06414   TTAGCCGGACCTTTC      GGAAACAGTCGGTA TAAA TAGCGGCTGTTACC       TTTTTCTTCGCCAAA  91 86
SH02_RS08715 NONE
SH02_RS08720 NONE
SH02_RS08725 NONE
SH02_RS08730 NONE
SH02_RS08735 NONE
SH02_RS08740 1779159 .. 1779172 +  -3.1  -3.57144   GCAATCGGCGAATAC               CTCTG GTCG TAGAG                TTTCAGGATAAAGAG  49 78
SH02_RS08745 NONE
SH02_RS08750 NONE
SH02_RS08755 NONE
SH02_RS08760 1783485 .. 1783521 +  -2.8  -3.95448   AGAACTGTCTAATGC   GTAGACCGGAAAAGGCG TTCA CGCCGCATCCGGCC-AC    TTTCAGTTTTACTCT  54 95
SH02_RS08805 1792490 .. 1792505 +    -4  -3.53091   AACATTTGCCGCTGT              TGGTCCT CGC AGG-CCA              TTTACGCGGCAAAAT  51 485
SH02_RS08815 1793345 .. 1793358 +  -3.1   -2.7263   GCAAATACGCACTGA               CCATGC GCC GC-TGG               ATTTCACAAAATAAT  42 197
SH02_RS08820 NONE
SH02_RS08825 1793745 .. 1793777 +  -7.8  -3.79909   AAATAATGTGATTTT     GT-GAACATCACCCC GTGC GAGGTGATGTTCCGC      TTGTTGCTAATTTAG  72 30
SH02_RS08840 1799135 .. 1799147 +  -4.7   -2.8478   CGTACTACCAGTTCG                CGCAG TTC CAGCG                GTTTGGTGACGTAAT  47 371
SH02_RS08850 NONE
SH02_RS08855 NONE
        torD 1804071 .. 1804101 +   -14  -2.73364   ATGAGCTACAAACCG       GGAAAGCCGCTGGC GCA GCAGGCGGTTTTCC       TGCTTCAGGTGCGCA  95 198
SH02_RS08875 1806936 .. 1806964 + -10.3  -4.61633   GAGGCAGGGGCTAAT        CAGGCATAGTTTG CGT CAAACCTTGCCTG        TTTTTGAAGATGTAT 100 169
SH02_RS08880 1808330 .. 1808360 +  -6.7   -2.7563   GCGGTGAAATAACAG       AAAACTCCCCCGC GAGAA GCGGGGGAGTCGC       TGGTTAAACGTTTTT  57 29
SH02_RS08895 NONE
SH02_RS08900 1809984 .. 1810002 + -13.1  -4.84918   TGTCAACAATCTGCA             CCGCCGG TAACC CCGGCGG             TTTTCTGTTTATGGC 100 255
SH02_RS08940 1816382 .. 1816415 + -10.9  -2.63585   TTCGACCACGTTAAA     GATGCCGGAGGAGGT TGTA ACATCCTCCGGCTAC      CTGTTTAACCTATAG  76 27
SH02_RS08950 1820757 .. 1820783 +  -4.5  -2.62111   TTCCGGTGGCAGATA        TAACGGCAA-GT TTCG ACATTGCCGATA         ATAATTTTTTGGAGA  48 136
SH02_RS08955 1822411 .. 1822436 + -14.7  -2.62515   TGCAGGGAGCGCGCA         GGGGGCGGC CAATCGCC GCCGCCCCC          TGCTGTCCCGGCCTT 100 123
SH02_RS08965 1823696 .. 1823707 +  -4.4  -3.34344   CGTAACAAATACGAC                GCAA ACTC TTGC                 TTAGTTACAACATAC  51 36
SH02_RS08970 NONE
SH02_RS08975 1826191 .. 1826204 +  -8.1   -3.4252   GCAGATGCCTGATGC               GACGC TTGC GCGTC                TTATCATGCCTACAA  68 69
SH02_RS08985 1827571 .. 1827595 + -13.6  -4.33907   AGTGTGTTATCGGTG          CAGAGCCCGG GCGAA CCGGGCTTTG          TTTTGGGTGTTTATG 100 40
SH02_RS09010 1835780 .. 1835790 +  -3.2  -4.24123   GGACACAGGCCTAAG                 CGAG GTT CTTG                 TTTTCAAATTGTTCC  58 71
SH02_RS09025 NONE
SH02_RS09030 1838489 .. 1838508 +  -7.8  -3.58256   ATATACGAAAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTTCTTTAAATATG  70 185
SH02_RS09035 1838851 .. 1838870 +  -7.8  -3.58256   ATATACGAAAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTTCTTTAAATATG  70 177
        ghrA 1840519 .. 1840540 +  -7.3  -3.05384   AATAAAGCATCAGGA           TTCCTGCTA TCCT TGGCGGGAA            TTGAATACAGGAGAG  61 39
SH02_RS09050 NONE
SH02_RS09055 1841901 .. 1841917 +  -3.7  -3.07622   CGTCACTCATAACTG              CAACGGA TAA TTTGTTG              TTGCATAAAATGTGT  48 51
SH02_RS09060 1842502 .. 1842520 +  -7.4   -5.4251   CTTAAACAGTAAAAT             GCCGGA TGATAAT TCCGGC             TTTTTTATCTGTCAG  95 59
        csgB NONE
        csgA 1846606 .. 1846621 + -10.4  -5.75342   TTTGTATTACAGAAA              CAGGGC GCAA GCCCTG               TTTTTTTTCGGGAGA 100 48
        csgC NONE
SH02_RS09105 1847496 .. 1847510 +  -5.7  -2.56181   AGAAGGTGTAAGGAG               GCGTT ATGAA AACGC               GTATTCATGTTGTGC  52 115
SH02_RS09110 NONE
SH02_RS09115 1849438 .. 1849448 +  -3.2  -3.83568   TGGCGTCGATATTGC                 CCGT GGA ATGG                 TTATTGTAAATGTGG  53 6
        mdoG NONE
SH02_RS09140 1855218 .. 1855236 +   -11  -5.40072   ACGAGCCAATAAAAA             TACCGGCG TTA TGCCGGTA             TTTTTTTACGAAAGA 100 156
SH02_RS09145 1855976 .. 1856002 +    -8  -3.06183   GGTATTCGACGACGA         CGTAGACTGTTC CAT GAATAGACTGCG         TTGAATAACACTACG  59 514
SH02_RS09170 1859546 .. 1859572 + -10.9  -2.77005   AACAGAATAAATATC         ATTGCCGGATG CGTGC CATCCGGCAAC         ATTTCACGCTTACTT  77 31
SH02_RS09225 NONE
SH02_RS09230 NONE
SH02_RS09235 1869473 .. 1869489 + -13.7  -4.11692   ATTCGCCTCTTTCAG              CGCCTGC CTT GCAGGCG              TTTTGCCCGTGGGTC 100 88
SH02_RS09240 1871062 .. 1871088 + -14.4  -2.75074   ACGGTGTAACAATGC         ATTCCGGCCTGC AGT GCAGGCCGGAGA         TAATCTTCAGATCGA 100 32
        flgB NONE
        flgC NONE
        flgD 1874248 .. 1874259 +  -2.2  -3.22113   CTTCACATTTCAGGA                GTCA GTCA TGGC                 CTTTTCTCAAGCGGT  43 43
        flgE NONE
        flgF 1876265 .. 1876279 +  -4.2  -2.94633   CATGACAAGTATAAG               TTGCCC GAT GCGCAA               GTTTATCGGGTCTAT  47 52
        flgG 1877200 .. 1877218 +  -8.1  -3.96337   AACTCTAAGGCTTAA             CCGGTGG CAGGT TCACCGG             TTTACTGATTTTTGA  74 33
        flgH NONE
        flgI NONE
        flgJ NONE
        flgK NONE
        flgL 1882709 .. 1882737 +  -8.8  -5.54264   TGGGTATGTTTTGTC        TGCCTGCTCTGG GATCG CTGGGGCGGGCA        TTTTTTTGCCTATTT 100 67
SH02_RS09320 NONE
SH02_RS09325 1887613 .. 1887624 +  -5.8  -2.72144   GATAATGGGCGGTTG                GCCT GATA AGGC                 GTTTACGCCGCATCA  52 58
SH02_RS09335 NONE
        rpmF 1889208 .. 1889253 +  -4.2  -4.07568   ACCGCGGCCGCAAGG TCATCGCTAAG--TAATCACGC ATCT GCGTGATGAAGCTTAGTGAGGA TTTTCCCCAGGCAAC  59 12
SH02_RS09345 1890380 .. 1890397 +  -5.5  -3.57263   TGCGGTAGCAGGACG             CTGCCAG CGAA CTCGCAG              TTTGCAAGTGACGGT  57 33
SH02_RS09350 1891369 .. 1891379 +  -2.4  -2.92267   CGGTGGATTCACCTG                 GGGC TCC GCGC                 TGGTTCGTTTCTAGG  42 1
SH02_RS09355 NONE
        fabG 1893114 .. 1893128 +  -7.8  -2.62642   AAAATGCTCATGTTG               CGCGCA GTC TGCGTG               GTTATGAGTAATAAT  60 54
SH02_RS09365 1893541 .. 1893567 + -13.1  -5.02287   GGCGTAAGTGAACAT        CTCCAGGCGGTC GTTC GACCGCCTG-AG         TTTTATCTTTTTGTC 100 34
SH02_RS09370 1894887 .. 1894902 +  -8.2  -5.52096   TCCACCCTTATAAAA              GGTCCG CTTG CGGGCC               TTTTTTCTTAGCTTT 100 51
SH02_RS09375 NONE
SH02_RS09380 NONE
SH02_RS09385 NONE
SH02_RS09390 NONE
SH02_RS09395 1899257 .. 1899275 +  -4.6  -2.79098   AATCCATCCGTTGAA             TGAGTTTT TTT AAAGCTCG             TAATTAATGGCTAAA  49 27
SH02_RS09400 1901008 .. 1901025 + -12.7  -5.04987   CGTTGGGGAGACTAA             GGCAGCC AGAT GGCTGCC              TTTTTTACAGGTGTT 100 50
SH02_RS09410 NONE
SH02_RS09415 NONE
SH02_RS09420 NONE
        thiK NONE
SH02_RS09430 NONE
SH02_RS09435 1907616 .. 1907629 +  -3.9  -4.34402   TTTCAGCAACAAAAC               TTGAT TAAC ATCAA                TTTTGGTATGACCAA  63 275
SH02_RS09440 1909125 .. 1909141 +  -2.2  -3.48924   GCCCTTGAGGAACAG              CGCG ATCGGCAGC CGCG              TTGTATCAGGCATCC  47 80
SH02_RS09445 1909842 .. 1909868 + -10.1  -5.43866   GTACTCTGCAATTTG         GCCCCTCATTC GCTCA GGCTGAGGGGC         TTTTTTTGCGACTTA 100 48
SH02_RS09455 1911050 .. 1911076 + -18.8  -5.60993   CTACTGCTGATTTTT         TCCCCGCGACAT GCC GTGTCGCGGGGA         TTTTTTTATCCGGGC 100 64
SH02_RS09475 NONE
        lolD 1918999 .. 1919015 +  -5.1  -2.98947   CTGATGGGGGCGGAG              TAATGGC GAT GCCTTTA              TCGTTATTAATTGGC  52 23
SH02_RS09485 NONE
SH02_RS09490 NONE
SH02_RS09495 1922408 .. 1922424 +  -6.5  -4.36063   AACCTAATGTGTTGG              TGCTGCC GGG GGGAGCA              TTTTCATGCTGTTGT  72 393
SH02_RS09535 1928759 .. 1928787 +    -9  -3.06133   GGAAGTAAGCGAAAA       G--GGATGCGGCAT GTG ATGCCGCATCCGGC       TTAAATCCAAACTTA  68 33
SH02_RS09580 1938077 .. 1938101 + -16.5  -5.46657   GTTTGTTAAATTTAT          TAACGGGAGCG TAA CGCTCCCGTTG          TTTTTTGTTAGGCTG 100 48
SH02_RS09595 1941337 .. 1941371 +  -7.8  -3.78312   GGTGAGAAATTCAAT     GTGGCGTTGAGATGCT TAA AGGTTCACAACGCTAC     TTTGCTCCATCCTTT  72 93
SH02_RS09620 NONE
SH02_RS09625 NONE
SH02_RS09630 NONE
SH02_RS09635 1947200 .. 1947212 +  -2.6  -2.79327   TCACATTGAGTCCTA                CGGG ATCCG CTCG                CTTTAACTGAGGTAA  42 7
SH02_RS09640 NONE
SH02_RS09645 NONE
SH02_RS09650 NONE
SH02_RS09655 NONE
SH02_RS09660 NONE
SH02_RS09665 1950753 .. 1950764 +  -5.8  -2.53715   TCTGCTTTTGAAAGT                TCGC ATCT GCGA                 CTTCATCATCATGAG  49 206
SH02_RS09680 1952012 .. 1952022 +  -2.6  -3.29854   GTCGTGAAAAATTGA                 TTAA AGA TTAA                 TATTATGCATGTTTT  46 117
SH02_RS09685 1953281 .. 1953305 +   -10  -5.05113   ATGTGTTAAATATTG          AAACGGGCGT ATAAC ACGCCCGTTG          TTTTATTTATGTGGA 100 446
SH02_RS09715 1957715 .. 1957731 +  -2.2  -3.12999   TGAATAATGCAACAG              CCTGAT TATTT AACAGG              TTAGCTATGAAGTCG  43 34
SH02_RS09720 NONE
SH02_RS09725 NONE
SH02_RS09730 1958778 .. 1958819 + -23.3  -2.62616   ATGTCCGCAATATCA GGTGTCAAGAATGGAGAGT TCTC GCTCTCCATTCTTGACGCC  TGATATCCCGCCTAA 100 126
SH02_RS09735 NONE
SH02_RS09740 1960979 .. 1961001 +    -7  -5.03994   TGCGCAAATAGTTGT           CAACCCTGGT GTT ATCACGGTTG           TTTTTATATATCACC  90 122
SH02_RS22920 1964255 .. 1964266 +  -5.8  -2.77899   TTTTAATATTGTAGT                CCTG CGCC CAGG                 TCATTGGTGCGAAAA  51 351
SH02_RS09775 1965604 .. 1965619 + -10.4  -4.54727   CCATCAACGATTAAA              CTGCGC TTCG GCGCAG               TTTTCGTTTACAGGA 100 41
SH02_RS09795 1968726 .. 1968740 + -11.4  -2.56046   CATTAACGTTTATGA               CGGGGA GAG TCCCCG               TCGGTTGACATTTAC  79 102
SH02_RS09805 NONE
SH02_RS09810 1969696 .. 1969726 +  -2.4  -4.34402   ACAAATAACCGATAT       CCGGCGGTGGCA TTATCTT TGTCGGCGCGGG       TTTTCATATCCACGA  58 33
SH02_RS09815 1970423 .. 1970451 +  -8.9  -3.09015   CGCGTTTTGTAATAC        TTTTTGCCGCC TGAAAGC GGCGGCAAAAC        TTGCATCGCTGTGCC  69 29
SH02_RS09820 1971049 .. 1971089 +  -4.1  -2.60615   AGCGCTCTGTCATAA  TGAGAGTTACCCGAT ACCTTATTATC AACAGGTAACTCTCA  ATCTTTAAAAAACGT  45 117
SH02_RS09830 NONE
SH02_RS09835 1974348 .. 1974358 +  -2.4  -3.28712   AGGCGACAAACACTT                 GCGG CAC CCAC                 TTATCCAGCGGCAGC  45 238
SH02_RS09850 1977361 .. 1977376 + -10.4  -5.80727   CGTTTAAAGAGCAAA              CCCCTC AAAC GAGGGG               TTTTTTGTTGTTTTT 100 48
SH02_RS09860 NONE
SH02_RS09865 1981737 .. 1981763 + -10.3  -3.53224   AGCCATTGCCCATGA         TAGTGTCCATT AAAAG GATGGACACTA         TTTCCCCGGAACCTG  80 132
        emtA 1985480 .. 1985494 +  -5.6  -4.58283   CGATGTAAATCAGTC               GCGCAC TTT GTCCGC               TTTTTCCCGGGCTTC  75 33
SH02_RS09890 1986676 .. 1986705 + -12.9  -3.59979   TAAGATTTTCATAAG       GCGGATAGCGATA CAGA TGCCGCTATCCGC        TTTCACATCAGAACG 100 38
SH02_RS09895 1987299 .. 1987356 + -10.6  -2.74563   AAAACCATAGCTATG GTGTTATCTGCCGACAACGCCATCCGG AGAAG CCGAATGACGTTGTCGG-AGTAAGCGC TGGTTAAGGTGTGGG  75 43
SH02_RS09920 1994692 .. 1994703 +  -4.4  -3.54146   CGATTTCTGATACAT                CAGA GTGA TCTG                 TATTTCATTCCGGCG  52 51
SH02_RS09930 1998324 .. 1998341 + -11.3   -4.6709   CGGTGAAATGAAAAA             TCCACGC AATT GCGTGGA              TTTTATATACTTTTG 100 192
SH02_RS09945 2000767 .. 2000796 + -11.5  -2.87963   AAATAATGCAGTTTG       CTGACCAGTCAGT TTGC GCTGACTGGTCAA        TCTCGTACTTATAAA  81 42
        hemA NONE
        prfA NONE
SH02_RS09980 NONE
SH02_RS09985 NONE
SH02_RS09990 2009786 .. 2009802 +    -3  -2.61216   AATAAATAACATCGC              GCATAA ACATA TTGTGC              TGCATTAATTAATCG  42 1
SH02_RS09995 2011022 .. 2011063 + -10.1  -4.78848   CTGGTTCAAGATTAG CCCCCGTTCTGTTGTCAGGT TGT ACCTCTCAAC-GTGCGGGGG TTTTCTCTTTCCAGC 100 347
        chaB 2014039 .. 2014051 +  -3.4  -3.15346   ATCGTAAAACCGGTC                GCTT AGTTA AAGC                TATTCGTGCGGTGTT  46 34
SH02_RS10025 2015341 .. 2015358 +  -4.1  -4.66264   ACTGCTTCTGCAGCG             TCTGACC AATC GGTCACA              TTTTTAAGGATTTTC  68 483
SH02_RS10035 2016932 .. 2016946 +  -2.8  -4.40894   CATTTTCTTCAGCAT               GTGC TTGACGT GCAC               TTTTACTGTGCTTTC  62 98
SH02_RS10050 2019564 .. 2019579 +  -4.8  -3.29324   AAAGTTATCTTATCG              TTTGAT TTAC ATCAAA               TTGCCTTTAGCTACA  53 46
SH02_RS10055 2021176 .. 2021194 + -12.4  -5.64274   ATTTGATTATCCTTT             GCGCGGCA TGA TGTCGCGC             TTTTTTTATGCGTCA 100 172
        narZ NONE
        narH NONE
SH02_RS10070 NONE
        narI 2028229 .. 2028244 +  -8.2  -5.60993   TTTAGTTCACATAGA              CCCTGC TTCG GCGGGG               TTTTTTTATGGGCAC 100 47
SH02_RS10080 2029093 .. 2029109 + -12.3  -3.57797   CCTCACCCTTCGGGC              CGTTGCC TGT GGCAACG              TTCTCTCGCTTTCGC 100 453
SH02_RS10105 2031810 .. 2031825 +  -7.6   -2.7264   GGACGAACTTTTGCC              GTTGGT ACGC ACCAAC               ATTTGACCAGAATTT  60 4
SH02_RS10110 2033053 .. 2033073 +    -4  -2.79796   CCTCCTTTTCAGAAC           TTAGC-CCC TTCG GGGTGCTGA            TATACTGGGATGCGA  46 142
SH02_RS10115 2034073 .. 2034094 + -12.3  -5.66684   GTGTTATCCACGAAA           CGGCGTTGA GCAA TCGACGCCG            TTTTTTTATAGCTTA 100 52
SH02_RS10125 2036164 .. 2036190 +  -9.3  -4.77165   TTTTGATATCTTAAC         CGACCTCGGCC TTGAT GGTCGGGGGCG         TTTTGTTATGAACAC 100 364
SH02_RS10145 2040943 .. 2040960 +  -8.4  -3.98113   TCCTTTCAAATGAAA             CGGAGC TGCCAT GCTCCG              TTTACTTCGTCATTA  77 42
SH02_RS10150 2043303 .. 2043331 + -15.3  -3.16187   AGCACTAATGGCAAT        ACGTGGGGCAGGA GTG TCCTGCTCCACGG        TGTCTGATTTTTATC 100 33
        oppB NONE
SH02_RS10160 NONE
        oppD NONE
SH02_RS10170 2047260 .. 2047279 + -13.6  -4.59773   CTTTAAAAACAATAA            GGGCTGAC AGTT GTCAGCCC             TTTTTCACGCTAAAA 100 35
SH02_RS10185 2049441 .. 2049479 +  -9.7  -2.50438   GCGATCTACAATATC   TAAATGTACTGGGCACC ATTGC GGTGCCCAATAAGTTTA   CTCTTCCGTCTTTAA  70 23
SH02_RS10200 2052296 .. 2052329 + -16.9  -3.14564   AATTCAGTAAGCAGA     AAGTCAAAAGCCTCC GACC GGAGGCTTTTGACTA      TTACTCAACAGGTAA 100 31
SH02_RS10220 2055538 .. 2055554 +  -2.2  -5.00138   GATCAAGAATAGTTT              CCAGTT GAACA ATCTGG              TTTTTGGTTTCACTA  71 423
SH02_RS10265 NONE
SH02_RS10270 NONE
SH02_RS10275 2067253 .. 2067279 +   -11  -3.01712   CAGACTTTACTATCA         GTGAGTCAGA TGTAAGT TCTGACTCAC         TGTTGCACAAAAGCA  79 155
SH02_RS10280 2068218 .. 2068238 +  -8.3  -4.62872   CGGTTAATCAAAGTA            TGCCGGA CGTCATA TCCGGCA            TTTTTACAGATTAAT  91 34
SH02_RS10300 2070872 .. 2070891 + -10.7  -4.58773   GATGTAAAAGACAAA            CGCGAGG CTAAGA CCTCGCG             TTTTGCTTTAATCAA 100 34
SH02_RS10310 2071386 .. 2071397 +  -4.4  -3.14848   CCAAGACCTGTTAAC                TCAG TCAC CTGA                 ATTTTCGTGAACAGA  49 4
SH02_RS10315 2074159 .. 2074176 + -10.5  -5.49234   GTTTTTATAAACAAA             GGGTCGC GAAA GCGGCCC              TTTTTTATTGCATAT 100 57
        cysB 2075325 .. 2075358 +  -9.7  -3.35613   AATTTCTTGCGTTAT     TTTCGGCACCTTT TATGTAGC GAAGGTGCCGGAA      TATATTCTCTTTTGT  76 39
SH02_RS10325 NONE
SH02_RS10330 2076157 .. 2076172 + -11.8  -3.66643   CTCACTGATCCTTGA              CCCCGC TGCG GCGGGG               TTGTCATTTGCTTTG  93 242
SH02_RS10340 2078995 .. 2079029 + -11.6  -2.52896   TTGAAGTAACAACTA     TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA     TGAATTACACAATGC  79 32
SH02_RS10350 2080631 .. 2080656 +  -4.1  -2.90813   CAATGCGTGTGGATG         CCATTT-CGC AGACGGC GCGAAAATGG         TACTTTAAAGGGCTA  47 80
SH02_RS10355 2081024 .. 2081038 +  -2.1  -2.81738   GCACTCGTCAGCGGC               GAAGG AATAA CTTTC               TATGCTGGAGTTGTT  41 16
SH02_RS10360 2082192 .. 2082204 +  -2.6  -3.18031   ATTAAACCGATTCGC                GGTC TTGAT GGCC                TGTAATTTTTAAAAA  44 8
SH02_RS10365 NONE
SH02_RS10370 2083475 .. 2083494 + -13.6  -3.71687   CGGTTAACATAAAAA            GCCACGGA TATA TCCGTGGC             TTTCGAATATTTTAC 100 34
SH02_RS10395 2087712 .. 2087723 +  -3.6  -4.32857   CGCTGCGAAACGGGT                GTCG GTCC CGGC                 TTTGTCTTTCAGGAA  65 355
        puuD NONE
SH02_RS10470 2103052 .. 2103065 +  -5.3  -2.70932   GCGAATCCCGATGAG               CTTAC TCAG GTAAG                TGATTCGGGGGAGCG  49 127
SH02_RS10475 NONE
SH02_RS10480 NONE
SH02_RS10485 2107516 .. 2107530 +  -8.6  -4.77438   CCCTTGTTGCAAACT               GAGTTG CAG CAACTC               TTTTTCCTGCTGCAT  93 244
SH02_RS10495 NONE
        pspB 2109499 .. 2109515 +  -2.1   -2.5655   CATCCGAACTGGAGG              GATCGCT AAT GGCGGGC              ATTAATCTCAATAAA  39 17
SH02_RS10505 2109851 .. 2109871 +  -3.4  -2.62463   CACGTTACGTAGCCG           TTTCCGTCA ACTG TGA-GGAAA            GTTATGAATACTCGC  42 10
SH02_RS10510 NONE
SH02_RS10515 2110502 .. 2110517 + -11.8  -6.30182   AGAATTCACCATGAG              CGGCGC TTAT GCGCCG               TTTTTTTTTCTGTCA 100 42
SH02_RS10520 NONE
SH02_RS10525 NONE
SH02_RS10530 NONE
SH02_RS10535 2115425 .. 2115437 +  -2.7  -3.10597   GCTAAAGCGGCCAGT                TTCTT TAC AAGGA                GTTTTAAATGAAAAA  44 36
SH02_RS10540 NONE
SH02_RS10545 NONE
SH02_RS10550 NONE
SH02_RS10555 NONE
SH02_RS10560 NONE
SH02_RS10565 NONE
SH02_RS10570 2123481 .. 2123492 +  -2.2  -4.09739   GGCAACGGTAATATT                CTGT GGTG ACGG                 TTTTCCAGAAATTAA  56 172
SH02_RS10580 NONE
SH02_RS10585 2127060 .. 2127079 +    -5  -3.34517   CGAAAAATAATGCAA            TATCGGGT GCTG ACCGGATA             TCTTTACGCCGAAGT  53 31
SH02_RS10590 2128746 .. 2128786 + -12.7  -3.61609   GAACGAAGAGTAAGC  GCGAATATGCCTGATGGTG CAA CACCATCAGGCATATTAAA  TTATGCTTTCAGTAC 100 28
SH02_RS10600 2130652 .. 2130686 +  -8.4  -2.94365   AATGCGGTGTATAAG     CTGGCACAGCGCCTGG GTT TCAGGTTCGGAGCCAG     GTTTGTCACCTGTCA  61 300
SH02_RS10620 2133362 .. 2133375 +  -6.7  -2.80195   GGCTGAAGTATAAAG               GTGCT GTTT AGCAC                TACTTGCTGATACAT  57 15
SH02_RS10625 2133566 .. 2133576 +  -2.6  -3.05561   TTTTGGAGACTATTA                 TTTA CAC TAAA                 TCTGATTTGATATAT  43 5
SH02_RS10630 2135334 .. 2135361 +  -8.4  -2.74525   TTGATGTGATGGGAA        CTGGCGTTACCC TTGT GCATAACGCCAG         TGATGTCTGATTTAG  64 37
SH02_RS10640 2137729 .. 2137740 +    -3  -3.35996   ACCTTCCCTAACTAA                TCAA TGCG TTGA                 TTGTAAATCCAGCTA  47 180
SH02_RS10645 2138115 .. 2138132 + -12.7  -3.47751   AGTAAGTAAAAAATA             GGCCCGA TAAC TCGGGCC              TTGTCAGTTATTGAA 100 36
SH02_RS10685 2146408 .. 2146420 +  -9.1  -2.88069   GGTAATACGTTGTTG                GACCG ACC CGGTC                TGGTTATCATATCGC  67 302
SH02_RS10695 2147509 .. 2147548 +  -3.4  -4.75372   GTAATCCGGTCATCG  CGTCATGGTGAGCAGCATG TTC CA-GCTGCTCCTCCAGCCG  TTTTTGCTCAGTAAT  71 510
        zntB 2149705 .. 2149724 +   -10  -5.85178   ATTGATTCGTACGAC            GCCGACTT TGAT GAGTCGGC             TTTTTTTTGCCTGTT 100 215
SH02_RS10710 NONE
SH02_RS10715 2151424 .. 2151438 +  -7.1  -3.30243   GGGATTGCCGGATGC               GACGC TGGCC GCGTC               TTATCCGGCCTCCAT  64 83
SH02_RS10770 2160134 .. 2160152 +  -7.4  -4.11394   TGCCTAATTGATTGT             CAATAGGC TAT GCCTAATG             TTTTGAGCGTAACCT  73 518
SH02_RS10780 NONE
SH02_RS10785 2161565 .. 2161576 +  -2.2  -2.88366   GGCGGCGGTTCTTCC                GACG ATTC TGTC                 ATTGTTCATTAAGCA  41 2
SH02_RS10790 NONE
SH02_RS10795 NONE
SH02_RS10800 NONE
SH02_RS10805 2164147 .. 2164158 +    -3  -4.00042   TAACTACAATATGAT                TCAT TTTG ATGA                 TTGTTTCATAAGGAA  56 46
SH02_RS10810 2165804 .. 2165834 +  -8.3  -4.71426   TTACCAGCAACACCT      C-CGTCCCAGTAGC ACTG GCTGCTGGGGTGCG       TTTTATTCATAAAGC  91 108
SH02_RS10815 NONE
SH02_RS10820 2166456 .. 2166475 +  -4.2  -3.33261   GATACGATAAAAAAG            CCATAGCT GCCC AGCGGTGG             TTATCGGAGTTCGGG  51 20
SH02_RS10825 2166893 .. 2166908 +  -6.8  -5.55769   TTATGTCGCCTGAAA              CCCACT TCGC GGTGGG               TTTTTTGTTGTCAGG  91 149
SH02_RS10830 NONE
SH02_RS10835 2168177 .. 2168192 +  -3.2  -5.03747   GCAAACACATCGAAT              CAGCCT ATTT AGGCTA               TTTTTTCCACCATTT  71 117
SH02_RS10845 2169493 .. 2169512 + -12.1  -5.26316   CACAGTGTTATGACA            GCCCGCC GGTTCA GGCGGGC             TTTTTTGTGGGGTGA 100 53
SH02_RS10860 NONE
SH02_RS10865 2173545 .. 2173557 +  -3.4  -4.78477   GGAAGACGTAAAGCA                TCTC ACACC GAGA                TTATTTTTTATATGT  68 103
SH02_RS10895 2182030 .. 2182075 +  -3.3  -4.88736   AAAGCGGTTACACAT GCTGCCGGAAATCATCATT TTTTCACC AAAGCTGATTTCTGGCGGA TTTTTATCGCTGGTC  74 250
SH02_RS10910 NONE
SH02_RS10915 NONE
SH02_RS10920 2186828 .. 2186854 + -15.3  -3.34192   ATCTGTTTTAACTAA         TTGGCGTTGCA GTACA TGCAACGCCAA         TTAGTTAGCGGAATT 100 166
SH02_RS10930 2189524 .. 2189538 + -11.4  -5.71712   CTCATAAGTAAAAAA               CGGCAC CTG GTGCCG               TTTTTTTGTCTGAAA 100 50
        paaA NONE
        paaB NONE
SH02_RS10955 NONE
SH02_RS10960 NONE
SH02_RS10965 NONE
SH02_RS10970 NONE
SH02_RS10975 NONE
SH02_RS10980 NONE
SH02_RS10985 NONE
SH02_RS10990 NONE
SH02_RS10995 2203917 .. 2203973 +  -5.3  -2.89534   AATATTGTTGGTGCC TGACGTATCG---TCTGGCCCTGGTG GGGTAAAG CGCCAGGGCCAGAAGTCGATACGACC TGTGCTATGATTCAT  50 23
SH02_RS11000 NONE
SH02_RS11005 2205574 .. 2205604 +  -9.3  -4.49906   TTGTCCCTTTAATTA      TAAAGCAGAG-TTA TGTT TAAGCTCTGCTTTA       TTTATTTGAGTATTA  95 57
SH02_RS11010 2208492 .. 2208504 +  -4.1  -3.44051   ACCCAGCGCACTATG                CGGAT GCC ATTCG                TTATAATGCTCGAAC  52 119
SH02_RS11025 NONE
SH02_RS11030 2214517 .. 2214540 + -11.8   -5.7946   CATGTGATCCCTAAA          CCGCAACGCTG ATA CAG-GTTGCGG          TTTTTTTATTGCCGG 100 48
SH02_RS11035 2215576 .. 2215593 +  -5.6  -6.28401   AACGAATATACAAAA             GGGAAA GATGCA TTTCCC              TTTTTTTCTTTTTTA 100 39
SH02_RS11040 NONE
SH02_RS11045 NONE
SH02_RS11050 NONE
SH02_RS11055 NONE
SH02_RS11060 2222751 .. 2222765 +  -3.4  -4.18494   TTATGCAGAAACAAT               GCTGTC GAT GGCTGC               TTTTGCGTCAGACTG  58 94
SH02_RS11070 2227435 .. 2227452 +  -3.4  -3.68351   GGCGATGGAGCAGAT             TAGCGG TTAACC CTGCTA              TTTGCCTGATAAAGA  51 16
SH02_RS11075 NONE
SH02_RS11080 2230288 .. 2230300 +  -6.9  -3.00017   TTCACCAGTTGTAAA                TCGCC CAC GGCGG                TAATTTCCGTTTGCG  56 161
SH02_RS11100 NONE
SH02_RS11105 2232616 .. 2232647 + -11.6  -3.52009   CTAGGTTCATTCGTT      GGCCTCGGTTGATA GAAA TATCGGTCGGGGCC       TTCGTCTTTCTGATT  89 310
SH02_RS11115 2234749 .. 2234778 +  -5.6  -4.07568   TCCCGGAACAGGCAG       GGCCACCAGCGT GGCATG ACGCAGGTCGTC        TTTTACAGCGCCAGA  65 183
SH02_RS11125 2237215 .. 2237227 +  -2.7  -3.74762   TGCATATTCTCTCAG                TTCAA CAA TTGGA                TTATTAATAAATATT  52 128
        mdoD 2239005 .. 2239028 + -14.6  -2.90075   TAATCGTTTTTTCTT          CGGCACCTTC TTCG GGAGGTGCCG           TCTGGTTAAACACGA 100 38
SH02_RS11140 2239367 .. 2239383 + -10.8  -5.02074   TGTAAACTTTCCTAA              GCCGCC AGCCA GGCGGC              TTTTTTAACAACTGC 100 36
SH02_RS11145 2240369 .. 2240381 +  -3.3  -3.05596   TGGCAAAATCAAAAA                CTTCG GCG CGATG                TTCAATAAAAGCATA  43 436
SH02_RS11155 NONE
SH02_RS11160 NONE
SH02_RS11165 2243615 .. 2243634 + -13.6  -4.85599   AAAGTAGTTCCAGAC            GCGCCATC GTTA GATGGCGC             TTTTTATCCGGTGCG 100 34
SH02_RS11170 2244092 .. 2244102 +  -4.6  -5.04249   ACAATGCCTTCCACG                 CCGG ATA TCGG                 TTTCTTTTTTCACAG  81 275
SH02_RS11180 2245714 .. 2245731 +  -4.8  -2.73124   CAACGTTGATCTTTA             TCCGGA TGCGCT TCCGGG              CTTTGGCAAATAGCC  46 393
SH02_RS11190 2247218 .. 2247238 +  -6.1  -4.63527   TTCGCAACGTCGCGC            TTGTGGCTA AAA TAGCCGCCA            TTTTTCAGCTACTGG  77 54
SH02_RS11195 2249717 .. 2249734 +  -7.1  -4.30177   AAATTACACACGGAG             GTAAACA CTAA TGTTTAC              TTTGTTGATATACTC  75 519
SH02_RS11205 2249929 .. 2249939 +  -3.2  -3.15579   GCAATCCTGAAACAA                 CTCG GTT TGAG                 TTAATCGCCAATTAA  46 11
SH02_RS11210 2250422 .. 2250439 +  -2.7  -2.63596   TACAGTTAACGAAAA             GTTGTCA TTTT TAACAAC              TGATATAGACTGCCG  41 42
SH02_RS11215 2251884 .. 2251894 +  -3.2  -3.08036   ACTTATTCAAGAACG                 GCTG TAA TAGC                 GTTTAATTTAATTCC  46 19
SH02_RS11220 NONE
SH02_RS11225 NONE
SH02_RS11230 2255232 .. 2255262 +  -2.6   -3.4331   GTTCGTGAAACGTCT      GG-GAGCGTTC-GA TGCAC TCTGAACGCGCACC      GTTTTTCCTCAAACT  48 4
SH02_RS11235 NONE
SH02_RS11240 2257500 .. 2257524 +  -4.3  -2.62263   GATAATATTGCAGAT          CGTAAGAGTAT GAG ATGATCTTGCG          TACTGTCAGAGCACT  45 42
SH02_RS11245 2257812 .. 2257828 +  -2.2  -2.60992   GAAAAAACTTGATGC              ACGTCA AAAAA TGACGC              ATATTTGCGCGCGTT  40 126
SH02_RS11250 NONE
SH02_RS11255 2258729 .. 2258747 +  -3.1  -2.52623   GGTAGAGGAGGTCTG             GGTGATG CGCAC CATCAGC             GTGTTCTGGACAACC  40 392
SH02_RS11270 NONE
SH02_RS11275 2261648 .. 2261661 +  -5.9  -3.76811   GACGAGAGTATAAGA               CGGCG CTTT TGCCG                TATTTTCATCATCTG  63 265
SH02_RS11285 2264931 .. 2264953 + -14.9  -4.19953   GTCAGTAATCTGAAT           TTGCCCGGC ACGTA GCCGGGCAA           TTTTGCAATTAACTC 100 107
SH02_RS11295 NONE
SH02_RS11300 2268120 .. 2268138 +  -5.4  -4.35992   CAAACCATCATTCAT             TTCAATGA TTG TTATTGAA             TTATTTATTGTTGTG  68 512
SH02_RS11305 NONE
SH02_RS11310 2270964 .. 2270993 + -11.7  -3.62354   GGCAGGGCAAGATCA       TGAAAATTGTGAT GTAA ATCACGATTTTCA        TCTTTGCTTTAACGC  90 104
SH02_RS11315 NONE
SH02_RS11320 2273437 .. 2273447 +  -6.8  -3.87104   GGGCTTTCGTAATCT                 TGCC CTG GGCA                 TTATTGTCGTATAAA  67 29
SH02_RS11325 NONE
SH02_RS11335 2275363 .. 2275394 + -16.6  -2.52795   TAATTTATGTCAGGT      TGCCGGATGCGGCG TAAA CGCCTTATCCGGCA       TACATTAGCCCGGTT 100 38
SH02_RS11385 NONE
SH02_RS11390 NONE
SH02_RS11395 NONE
SH02_RS11400 2292492 .. 2292523 + -13.9  -3.21395   TTTTGAACTTTAAGC      TGAAAATGGCGCT GTAAAA GGCGCCATTTTCA       TATTGTAGACAACGT 100 45
SH02_RS11430 2297552 .. 2297579 + -11.3  -3.67558   AGCATTGCCGGATGA        CGCGTCAGGCG CGTGAA TGCCTGATGCG         TTGTTAGCATCTCTA  90 41
SH02_RS11590 NONE
SH02_RS11595 2344521 .. 2344531 +  -6.8  -3.09803   TAAAAAACGGGAGGC                 CGCA TAA TGCG                 TATTCGCTACGGTTG  59 19
SH02_RS11600 2345512 .. 2345536 +  -2.1  -2.54732   GGGCCAATAACCCAT          TGCCATAAAGG ATA TCTTCATGACA          CTTCATCGCTTTAAG  39 18
SH02_RS11605 NONE
SH02_RS11610 NONE
SH02_RS11615 NONE
SH02_RS11620 2349062 .. 2349075 +  -5.3  -3.07043   CGAAGCCAGTACACG               CTGAA GATC TTCAG                TCTTGAGATAATGAG  53 503
SH02_RS11630 2350003 .. 2350015 +  -3.3  -3.80893   GAAAGTAAGGCGCGC                CGGAA GTG TGCCG                TTTGCCTTCTGCCCT  53 376
SH02_RS11660 2356167 .. 2356179 +  -2.7  -3.68936   AGGGATATCAATGAG                CTATT TTT GATAG                TTCTTGCGGTTAATA  50 27
SH02_RS11665 NONE
SH02_RS11670 2358705 .. 2358718 +  -9.5   -5.1861   ACGCAATAGTTGAAA               GGCCC ATTC GGGCC                TTTTTTAATGGTACG 100 32
SH02_RS11680 NONE
SH02_RS11685 NONE
SH02_RS11690 2360697 .. 2360714 + -12.7  -3.73068   ATGTAGTTTGTTCTG             GCCCCGA CATC TCGGGGC              TTATTAACTTCCCAC 100 35
SH02_RS11700 2362975 .. 2362991 +  -5.7  -4.40298   GATTCGAGCAAGACC              GTGGGGG CAG CCCGCGC              TTTGTTGATTTAAGT  70 1
SH02_RS11705 2363246 .. 2363282 + -10.2  -4.82901   ATAATCCCTCACCTA   ACCGGCCCCTTGTTACA GTTG TGTA-CAAGGGGCCTGA    TTTTTATGACGGCGA 100 50
SH02_RS11720 2365775 .. 2365803 + -13.9  -2.58292   TTACTGCTATAACCA        GGCTGGCCTGG CGATATC TCAGGCCAGCC        ATTGGTGGTGTTTAT  95 29
SH02_RS11730 2368752 .. 2368769 + -10.5   -3.8591   TCAGTAATTTTTATA             CCCGGCG TAAC TGCCGGG              TTATTGCTTGTCACA  86 34
SH02_RS11735 2369527 .. 2369550 + -13.2  -3.63922   AGAGTAATTCATTTC          CTCTCATCCC ATCC GGGGTGAGAG           TCTTTTCCCCCGCCT 100 34
SH02_RS11740 2369905 .. 2369928 + -11.8  -5.26875   ATGAACTAAGCGTGT          G-AATGCCGCC GAT GGCGGCATTGC          TTTTTTACTTCACGG 100 32
SH02_RS11755 2373945 .. 2373955 +  -2.6  -2.77118   CCGAGTTAAAGCCAT                 TTTT CAC AAAA                 TCGATTTTGGGTCTC  42 185
SH02_RS11760 2374948 .. 2374964 +  -6.5  -5.80003   CAATATGCTCACTGG              CTACCTG CAT CAGGTTG              TTTTTTGTTTCTTCC 100 281
SH02_RS11780 NONE
SH02_RS11785 2378044 .. 2378059 +  -4.6  -3.93984   TCAAATATAACAAAA              CCCCGT AAAA ACGAGG               TTTATGGATAAATTT  61 132
SH02_RS11830 2382836 .. 2382867 + -10.2  -5.08601   ATTGCCCCATTTAAA      GCACAAAACCCGCT CATC AGCGGGTTTTCTAC       TTTTTCTTAACGTCG 100 314
SH02_RS11870 2387232 .. 2387250 + -11.7  -4.11216   AGTGACAGCCGTATT             GTGGCCC TCATC GGGCCAC             TTTTCGCCATCAGCC 100 40
SH02_RS11885 2388817 .. 2388839 +  -4.3  -4.09864   AGCGGACAAATAAAA          GATAACATCA TCAA TGA-GTTATC           TTTTACCACATCAAT  61 21
SH02_RS11890 2389215 .. 2389231 +  -2.1  -3.53343   CCGAAGGCGAAGAAG              CTCTCAG CTT CAGTGAG              TTTAAACAGGCGCTT  47 97
SH02_RS11895 2389785 .. 2389802 +  -6.9  -3.36492   CGGGGTTATTCCTTC             CCCGTTG AGGA CACCGGG              TTGTCAGGTTGACCA  59 289
SH02_RS11905 NONE
SH02_RS11910 2390818 .. 2390829 +  -2.2   -4.4017   AAACCGCTGGGATGA                GGAG TCTG CTTC                 TTTTGTCCCGGTTGA  60 378
SH02_RS11920 NONE
SH02_RS11925 2393488 .. 2393500 +  -3.4  -2.94032   GTAATTAATTTTTCT                GGTT TAATT AACC                CTTTACTTAACCAGT  42 325
SH02_RS11945 NONE
SH02_RS11950 2397262 .. 2397277 +  -4.6  -4.36411   TTTTGATGGTGTAAA              CCCGTT CGAC GGCGGG               TTTTACTCCTTCATC  67 63
SH02_RS11960 2398367 .. 2398389 +   -12  -2.74144   ACATTATCGACTGAA           CGCCGGATAT GAC AAATCCGGCG           ATTTGAACATACAAC  83 42
SH02_RS11965 NONE
SH02_RS11970 NONE
SH02_RS11975 NONE
SH02_RS11980 2404951 .. 2404968 + -12.7  -2.76315   CAGGTTAACAAATTG             GTGCGGG GCAA CCCGCAC              ATTTCAGGATGTTAG  89 33
SH02_RS11985 2405577 .. 2405589 +  -9.1  -3.41073   CTGTTAATTCCTGTC                GCGGT TAA ACCGC                TGTTTCGATAGGATC  73 2
SH02_RS11990 2407442 .. 2407455 +  -3.1   -4.4846   ATTGATTGGGCAACT               GT-GCG CCA CGCTAC               TTTCTTCTTCGCTTA  65 416
SH02_RS12010 2411440 .. 2411469 +  -9.4  -3.62597   ACGCCTGAAAAATAA      GTCCGGACTGCGGT AAAT ACC-C-GTCCGGAC       TTATTGCCAGCTCAA  78 33
SH02_RS12015 2412209 .. 2412239 + -11.9  -2.71924   TCGCGCCTGAAAATT       ACGGTGCTAAGCG GGTAA CGTTTAGCACCGC       CTTTAGCGGAGGGTA  83 70
SH02_RS12020 NONE
SH02_RS12025 2413270 .. 2413293 + -15.3  -3.13403   AAAATAATGTTCAAA          CGCTGCCCG ACAGCG CGGGCAGCG           TCTTCATCAGGCAAG 100 34
        tqsA 2415556 .. 2415568 +  -4.1  -3.53811   CACCAGCATAGCCAG                TGTTC ATC GAACG                TTTAAAGACAATCAC  51 154
SH02_RS12055 2419872 .. 2419888 + -10.8  -3.81062   CAGTTACTCCTATAA              GGCGGC TTGAT GCCGCC              TTTCGCATTTTTAGT  88 46
SH02_RS12060 2421409 .. 2421433 +  -5.7  -3.05384   CGGCGACCTGGATGC          TGGTGGGATAA CGT TCATCCCATCG          TTGGATAGCAAAGGA  54 15
SH02_RS12065 2422170 .. 2422183 +  -4.5  -2.92102   GATGGCGGTCGTCAT               CTGCG TTAA TGCAG                CTTTATCCAGCATAT  50 17
SH02_RS12075 NONE
SH02_RS12080 2424719 .. 2424733 +  -3.6  -2.53119   AAAATAAGTATGTTG               TAACTA AAG TGGTTA               ATATTATGGCGCGTT  44 81
SH02_RS12085 2426112 .. 2426127 +  -5.4  -4.11484   TTTCCCCGGCATGAT              TGAGCT GCCC GGCTCA               TTTTCCGGGATTGAG  65 469
SH02_RS12100 2430289 .. 2430309 + -12.6  -4.27483   AGGCTTATAACACCT            TCAGGCGG CCAGT CCGCCTGA            TTTCATTTTATGGAT 100 83
SH02_RS12105 2431854 .. 2431877 +   -11  -4.34402   AATTCACGGCCAAAA          CGCCGGAG AATTTTCA CTCCGGCG           TTTTCATCTGAAAAC 100 39
SH02_RS12140 NONE
SH02_RS12145 2442609 .. 2442650 +  -8.7    -4.652   CCGCGCTGTTCGTTA ACCCCAATTGCGCAACG TAAAAAAT CGTTGCGCAATCGTGGA  TTTTTACCCTGCTTT 100 25
SH02_RS12150 2443720 .. 2443743 + -15.4  -4.72272   CGCGAAGTAACAAAA          TGGATGGTGC AAAT GCACCATCCA           TTTTTCATGCAAGGC 100 31
SH02_RS12160 2445177 .. 2445199 +  -6.3   -4.3208   GCACTTGTGGAGCGA          CATGCTGCCC GTCC GGGT-GCATG           TTTTCACTTGTCGGA  72 46
SH02_RS12165 NONE
SH02_RS12170 NONE
SH02_RS12175 NONE
SH02_RS12180 NONE
SH02_RS12185 NONE
        rnfD NONE
SH02_RS12195 NONE
SH02_RS12200 NONE
SH02_RS12205 2452645 .. 2452664 +  -7.9  -2.52234   GACATCTGAAGAAAA            GGGGTAA CACCGA TTACCCC             ATTGATAACCTTTCT  60 32
SH02_RS12210 2453031 .. 2453041 +  -2.6  -3.57792   AATCTGCCGTTACGT                 TTTT TGA AAAA                 TTTAACGCTGGATAA  50 90
        tppB 2454775 .. 2454797 + -13.5  -6.36459   GAAACTCTTTTACAA           GCCGCTAAC TTTTC GTTAGCGGC           TTTTTTTTTGTTCAG 100 49
SH02_RS12220 2455470 .. 2455483 +  -5.9  -3.28924   TAAAGTAATAGCCAT               CGGCC CACA GGTCG                TTGTGGGCCGAAATG  57 33
SH02_RS12250 2460828 .. 2460863 + -11.8   -3.5332   CTCCGCGCTAAATAA    GTTTGCGTGTGGTCAG GTTA CTGACCACACGCCCCC     TTCATTTCACCCTTT  91 30
SH02_RS12260 NONE
SH02_RS12265 NONE
SH02_RS12270 2464862 .. 2464889 + -11.2  -3.69902   TTTGTGGATCAAGAT        GCCCGC-CTGCGG ATT CCGCGGCGCTGGC        TTTGCCATCTTTGGT  81 274
SH02_RS12290 2467089 .. 2467108 +  -4.9  -5.24129   AAAACATTATTGCGA            CGCCTGC CGTTTA GCAGGCA             TTTTTTATCACCAGA  80 12
SH02_RS12295 2468250 .. 2468267 +  -9.8  -2.78384   AATCCAACATTGCGA             GCGGCG TAAAGC CGCCGC              TATACTAAAACAACA  72 39
SH02_RS12300 2468730 .. 2468757 +  -9.9  -3.46647   GGGCAACTAATCTCC        TGCCGGGCGTGA ACTCA TCGCGCCCG-CA        TCTTTACTGCATCGA  78 31
SH02_RS12305 2469482 .. 2469513 +  -7.4  -2.79679   AGGTGTAATCGAGTC      GATGCCTGATGACAT GCA ATGAT-TCAGGCATC      TATAGTGAGGCTATT  59 33
SH02_RS12310 2474192 .. 2474219 + -15.7  -3.01791   GGGATAGAGAAAGGA        CTGACGGATGC CCGTTC GCATCCGTCAG         TATTGCAGGACGGAT 100 34
SH02_RS12320 2475734 .. 2475763 + -12.3  -3.59432   ACACTTCGCTAAAAC       TTTACCCTGTTGT TACG GCAACAGGGTAAG        TTCATCTTTTGTCTC 100 29
SH02_RS12325 2476568 .. 2476589 + -14.5  -5.38326   TGTCAGCAACTGTAA           CGCAGAAGG TTAT CCTTCTGCG            TTTTTGTTTAATTAG 100 154
SH02_RS12340 2479351 .. 2479365 +    -7  -3.07895   ACTATCGTCGTTAAT               CACCCG TTG CGGGAG               TCTCTTCCGGCTCCC  59 27
SH02_RS12350 2481802 .. 2481821 +  -7.1  -2.91276   ACGTCGGATTATAGA            CTCGCGG TTTTTT CTGCGAG             ATTTCTCACAAAGCC  61 225
SH02_RS12355 2483053 .. 2483073 +   -14  -3.60475   CTAAAGGCTATTCTA            TCGCCCCC TCTCC GGGGGCGA            TTTCAGATCAGGCTT 100 37
SH02_RS12365 2485318 .. 2485345 +   -12  -3.90048   CCCGCTAATAAAGAC        AAGGCGCAACCT TCAC GGGTTGCGCCTG         TATTTTTACGCAGGC 100 33
SH02_RS12375 NONE
SH02_RS12380 2487070 .. 2487088 +  -7.5  -3.45037   GTCCACTCGGACGCA             CCAGATT TTCTT AATCTGG             TCTTCTCCTTTTTCC  66 23
SH02_RS12385 2487500 .. 2487514 +  -8.5   -4.3014   ACAGAATTTAATCAA               GGGCG GTTAG CGCCC               TTTTCATCCCTGTCT  82 40
SH02_RS12390 2489466 .. 2489479 +  -8.1  -2.72144   CAATTCTGGCGTTTG               CGCCA AAGC TGGCG                ATTTGCACCAGGTCA  57 276
SH02_RS12430 2497623 .. 2497638 + -11.8  -5.99154   AATTTGTATATCGAA              GCGCCC TGAT GGGCGC               TTTTTTTATTTAATC 100 58
SH02_RS12435 2498159 .. 2498177 + -14.6  -6.02914   CTGTGAAGTGAAAAA             TGGCGCAC ATT GTGCGCCA             TTTTTTTTGTCTGCC 100 47
SH02_RS12490 2510674 .. 2510694 + -16.9  -3.61517   ATAAGTAATTTCTCA            TCAGGCGGC TCT GCCGCCTGA            TTGTTAACCACCGCT 100 33
SH02_RS12495 2511491 .. 2511519 +  -3.1  -3.33922   TTGTTACAACAATAA        TGAACGGATGCTG ACA CAACATCGCTTCA        CTTTTTAAAGCACCT  47 65
SH02_RS12500 NONE
SH02_RS12505 NONE
SH02_RS12510 NONE
SH02_RS12515 NONE
SH02_RS12520 NONE
SH02_RS12525 2518832 .. 2518867 + -14.7  -2.91276   AGAACAAATAATCTG    CAGGCGGCGCAGCTT CTTAAC AAACTGCGCCGCCAG     ATTTATCCAACAAGA 100 30
SH02_RS12540 NONE
        fixB NONE
SH02_RS12550 NONE
SH02_RS12555 2523467 .. 2523487 +   -14  -2.69057   TAATCATGCATCCCA            CAGGCCCG CATCT CGGGCCTG            ATGTTCTGTTTCGAG  95 38
SH02_RS12560 2525181 .. 2525207 + -10.7  -5.02645   TTCGGGGATCACATA         ACCCCGGCGAC TAAAC GCCGCCGGGGA         TTTATTTTATTTCTT 100 49
SH02_RS12575 2528746 .. 2528775 +  -4.3  -4.98468   CATGGGCCTTAGTCG       CCGAATGTACTAG AGAA CTAGTGCATTAGC        TTATTTTTTTGTTAT  74 13
SH02_RS12580 2529967 .. 2529990 + -15.4  -3.86822   CCGCTTCTGAATGCG          TGCCCATTCC TGAC GGAATGGGCA           TTTCTGCGCAACTTG 100 31
SH02_RS12585 2530661 .. 2530696 +  -5.4  -3.64164   TAATCGCTGCGCTCT    CGCGCCATCAGACTGAA TAA TTCATTCAG-TAGCGCG    TTATCCTCTTTTTGC  58 402
SH02_RS12660 NONE
SH02_RS12665 2546042 .. 2546054 +  -9.1  -3.67141   GCCCCGGAGGCATAG                CCCAG CGG CTGGG                TTTCACTGGCATTGT  73 316
SH02_RS12675 NONE
SH02_RS12680 NONE
SH02_RS12685 2549153 .. 2549169 + -10.8  -4.43477   TGGGTTGAGGATAAT              GGCCGC TCCGT GCGGCC              TTTTGATTAAATAAA 100 43
SH02_RS12695 2550531 .. 2550558 + -19.2  -4.15029   CTTCTCGGTTAATGA        CCAGGGGCAGTG ATCT CGCTGCCCCTGG         TTCTTTATCTGAAAT 100 29
SH02_RS12700 2551301 .. 2551317 +  -5.2  -3.70902   CAAAAATCACCTTTC              TGGAAT AAGCA ATTCCA              TTTGAATATAAGAGC  59 46
SH02_RS12705 2552815 .. 2552847 + -12.7  -3.83644   ATTAATTCTTATGCT      GGCAACGGTCCGTTT TGT ATAGGGGCCGTTGCC      TTACTTTTTAAATGT 100 36
        katE 2556608 .. 2556637 + -13.5  -2.95116   AAAATTCCTGCCTGA       TGGGAGGCGGCGC AATT GCGCCGCCTCAAA        TGATTTACATAGTGC 100 26
        nadE 2563802 .. 2563829 +   -12  -2.78371   GCGAAAAAGAGTAAT        TTGTTCACGCCG GATG CGGCGTGAACGC         CTTATTCGACCTATA  73 63
SH02_RS12770 2565324 .. 2565369 + -10.5  -3.53761   CCAGTAAAAATCACG TTTTGCCGGTGGGAACGTGCAA ATT TCGCGCGTTTC-ACCGGCAGCA TTTCGCCACAGATTC  78 468
SH02_RS12810 2573706 .. 2573722 +  -6.5  -2.80816   TCTGGGCGACCTTCC              GCCGCTA ATT TAGCAGC              TCTCCTGGCTCAAAC  55 18
SH02_RS12815 NONE
SH02_RS12820 NONE
SH02_RS12825 NONE
SH02_RS12830 NONE
SH02_RS12835 NONE
SH02_RS12840 NONE
SH02_RS12845 2579871 .. 2579884 +  -2.3  -2.70788   GAAAATTACAACAAA               CTGCG ATAA CGCAA                AGTTTTTCTCAATGC  40 17
SH02_RS12850 2581465 .. 2581477 +  -2.7  -4.26076   GTGCATAACCGGGGT                TATCA ATC TGATG                TTTTGCTGCCAGTGC  60 237
SH02_RS12860 2582499 .. 2582524 +  -7.5  -2.66272   GGCTGCGCTGACTGC         CCGCCTGAACT GAAC ACTTCTGGCGG          TACGTTTACCTCCAC  56 148
SH02_RS12870 2584331 .. 2584346 +  -3.2  -4.30719   GTATTTAACGGATGA              TGCTCC CCAC GGAACA               TTTCTTATGGGCCAA  61 163
SH02_RS12900 NONE
SH02_RS12905 2591182 .. 2591211 +  -9.4  -5.08824   CGTTAAGTCTTGTAC       TGA-GTGGCCGAC AGATC GTCGGCCACATTA       TTTTTTACGTCGACG 100 35
        ansA NONE
SH02_RS12915 NONE
SH02_RS12970 2604272 .. 2604289 + -11.3  -5.82316   ACTGTGATCTAAAAA             GAGCGAC TTCG GTCGCTC              TTTTTTTTACCTGAT 100 52
SH02_RS12975 2605198 .. 2605209 +  -4.4  -3.57507   GGCGCAATCCATTCG                CGTT GCGA AACG                 TTAATTTACGTTAAT  54 10
SH02_RS12990 2609297 .. 2609312 +    -4  -2.73875   ACTGTGCGAATGGTA              TTTGCG CGTA CGTAAA               TCGTCTTAACAACCC  46 1
SH02_RS12995 2610723 .. 2610749 + -11.6  -4.76892   TAAAGGCTAAAACTA         TCAGCCAGGTCA TTA TCGCCTGGCTGA         TTTTTAGCTTACTGT 100 31
SH02_RS13000 2612357 .. 2612375 +  -8.1  -4.20106   GCAAAAATATTCAGA             GCCATGC TTTTT GCGTGGC             TTTTGCATACAATTT  76 43
SH02_RS13005 NONE
SH02_RS13010 2614795 .. 2614806 +    -3  -4.61482   GCAGCAAGCGTAAAG                TAAG CAGG CTTA                 TTATTTTTTGGCAAG  65 264
SH02_RS13020 2615296 .. 2615317 + -11.5   -4.1711   ATCTCGCAATATATC           GGCCTGGCG TTTG CCCCAGGCC            TTTCTTAAACATAGT  93 44
SH02_RS13030 NONE
SH02_RS13035 2617897 .. 2617930 +  -3.8  -3.72984   TCTGCTGGCAATAGA     CCGACGCCGGATTTG CCATA CCAATCT-GCGGCGG     TTTAGGTGCTTCTGG  56 187
SH02_RS13045 2619206 .. 2619223 +  -3.3  -3.09131   TTGTCGCGCATCCAG             CGCTACA TTCC TGAGGCG              TATTCACATCCTTTT  46 12
SH02_RS13050 2619451 .. 2619468 +  -8.4  -3.95219   CTAAAAAATAGCAAA             GGCTGC CTGTGT GCAGCC              TTTGTGCAATTTAAG  77 126
SH02_RS13080 2623498 .. 2623514 + -13.7  -5.87996   ACCAGTTTATTTGAA              CCGCGTC ACT GACGCGG              TTTTTTTATTCGTTC 100 47
SH02_RS13085 NONE
SH02_RS13090 2626289 .. 2626304 +  -4.6   -4.7373   TCGGCGGCGGTATTT              TCCGCC GCTG GGCTGA               TTTTTGATGGAGTAC  71 46
SH02_RS13095 2627290 .. 2627340 + -18.3  -4.26344   GTGTTGGATTTGTAG TTTGCCGAAGCCGGATGTGGCGC TGAGC GCGCCCAGTCCGGCTTCGGAAGA TTTTACTGCGGATAT 100 26
SH02_RS13125 2634584 .. 2634594 +    -4  -3.06515   ATATAGCCTTATCGA                 TAAC ATG GTTA                 ATTTTAAGGATAAGA  47 419
SH02_RS13130 2634941 .. 2634971 + -11.3  -4.84359   AGCATAAATGGGTCA       GGACGCTTTTAAT CACAT ATAAAAAGCGTCC       TTTTTCTCACAATCA 100 55
        pabB NONE
SH02_RS13145 2637373 .. 2637392 +  -6.4  -2.58427   CGCTGTTATTAGTTC            GTTACTGG AAGT CCAGTCAC             CTTGTCAGGAGTATT  54 171
SH02_RS13150 2638785 .. 2638811 +   -13  -3.88583   GACTAATACTTCTTA         CTCGCCCATCTG CAA CGGATGGGCGAA         TTTATACCCGCTTTC 100 35
SH02_RS13155 2640494 .. 2640506 +  -6.3    -2.567   TCACGCCCATTATGC                CGTTA CGT TAACG                CTTACTCATCTTCAT  53 15
SH02_RS13170 NONE
SH02_RS13175 NONE
SH02_RS13180 2645242 .. 2645259 + -14.1  -5.71712   ACTGTTGTACACTAC             CGGGGCC TTTT GGCCCCG              TTTTTTTATCTGGAG 100 42
SH02_RS13185 2645749 .. 2645800 +  -9.8   -3.1577   AATAAGTTATGAATT TAGCCAAAGCTATGTTTAGTGTATT TTT AATA-ATCAGACATAGCTTAGGCTA TATTACCTCTTCCCT  74 36
SH02_RS13190 NONE
SH02_RS13195 2647149 .. 2647170 +  -4.3  -4.43501   CACAAAAAGTGACCT           GCGGATAGCG TTT CGCCG-CCGC           TTTTATCGCTACCTT  67 441
SH02_RS13215 2648438 .. 2648455 +  -9.9  -2.65354   ACCCTAAAGAGAAGT             CAATCCC CAAA GGGATTG              TAAATTTAAAATAAG  71 225
SH02_RS13230 2649747 .. 2649777 +  -6.9  -3.29471   CTCATGCTAAATAAA       GAACCTGTCTG TTTGATATT CCGACAGGTTC       TTACTCTCATCAGAA  61 129
SH02_RS13240 2652134 .. 2652153 + -10.7    -4.946   CAGGGCATAAAAAAA            GCGCGTC GATCAG GACGCGC             TTTTTAGTATTTACT 100 31
SH02_RS13265 NONE
SH02_RS13270 2660630 .. 2660655 + -14.7   -3.9712   CCAAATAATGCCCAC         TGCTCCGGCGT GCCT GCGCCGGAGCG          TTTATGCTAAACTGC 100 33
        yebU 2662144 .. 2662160 +  -2.2  -2.63208   CGGTAACGCCTGACA              GCGC ACAAAAAAA GCGC              ACTTTTTGACTGGCA  40 28
SH02_RS13280 2662507 .. 2662523 +  -7.9  -4.12857   CTGATCCAAAAAGAA              CCCGTCG GCA TGGCGGG              TTATTTGTCCTGGTT  76 37
SH02_RS13285 2663041 .. 2663051 +  -2.4  -3.00298   AGCAATAACATGCTT                 GCCG GTG CGAC                 TGTGTACTTCAAGAA  42 275
SH02_RS13315 NONE
SH02_RS13320 2666583 .. 2666599 +  -2.1  -3.07233   TACGCTAGGCTTTTT              CGGCCTG GAG CATGCCA              TGTTGCGCATTATCG  43 33
SH02_RS13325 2667665 .. 2667686 +  -7.3  -3.45366   GTACCTGGGCGATAA           CGCCGTGGAA TAA TTCCG-GGCG           TTGATTAATTGCAAC  61 429
SH02_RS13340 2670696 .. 2670708 +  -4.7  -4.73613   TTGATCATCTGCCCA                ACGCG CCA CGCGA                TTTTGTTGATAATCA  75 365
SH02_RS13355 2672564 .. 2672584 + -15.5   -4.4267   AAAACGCTACAAAAA            TGCCCGATC CTC GATCGGGCA            TTTTGACTTTTACAG 100 51
SH02_RS13380 2678054 .. 2678066 +  -6.2  -4.08651   ATGAGATTAATTTAT                CGCC ATCGC GGCG                TTATTTCATTCGGAT  69 79
SH02_RS13385 2679678 .. 2679696 + -10.3  -5.68438   TATCATCAGGCGAAG             GCCTCTC CTCGC GAGAGGC             TTTTTTATTTGATGG 100 133
        znuC 2683876 .. 2683915 +  -3.6  -3.33815   CGAATTGTTTTGCGT  CGGGGAAATGATCGCTCA TGAT TGAATTATTATTTCCCGG   TTGGTTAGCCGGGAT  49 5
        znuB 2684686 .. 2684738 +  -8.4  -3.03443   CCAGCTAATCTATCG CTGAACACATTTGTCGGATGCGGCG CGAG CGCCTTATCCGACCTACG-GTTCGG TATCTCTGGTAGTCC  65 33
SH02_RS13425 2687468 .. 2687497 +  -7.1  -5.02074   TAGCGGGCAGTTTCA       GCAAGGTGCGG ACCATATG CTGCACCTGGC        TTTTTTCGGCACTGC  86 161
SH02_RS13450 NONE
SH02_RS13455 2692716 .. 2692726 +  -2.4  -3.04894   CCTATCATAGACAGG                 TGCC ATC GGCC                 ATTTTAAAGGGAGTT  42 49
SH02_RS13460 NONE
SH02_RS13465 NONE
SH02_RS13470 2695029 .. 2695046 + -14.1   -3.0976   GTTTGCATAACCTCA             GCGCCCG TTTC CGGGCGC              TATTCACGTCTTACG 100 162
SH02_RS13495 2702296 .. 2702321 +  -9.8  -5.46657   TTTCGTGAGAGTGAA         GCCTGATCAGG GTTAG CC-GATCAGGC         TTTTTTATTGCCATC 100 47
SH02_RS13500 2703300 .. 2703310 +  -6.8  -3.32844   ACCAGCGTCATCAAT                 CCTG AAG CAGG                 TTGTCGCGTAGAAAG  59 386
SH02_RS13580 2719935 .. 2719953 +  -8.8  -3.06483   TATCGCGCTGCTGGC             TTTCCGCG CTT CGCGGAAC             TATCTGCTTTAGGTC  68 76
SH02_RS13610 2727177 .. 2727204 + -11.3  -5.52986   GAAGGTTTTGAGAAA        CCGCTGCCTCA TCTGTT TGAAGCAGCGG         TTTTTTTAATGGGAT 100 71
SH02_RS13620 2727842 .. 2727854 +  -9.1  -3.64488   GATGGCAAGAAATAG                CGCCT GCC AGGCG                TCTTTTCCGGCCATT  75 148
SH02_RS13625 2728261 .. 2728276 +  -6.8  -2.71364   TAAATATTTTAATCA              GCGAGG GGAT CTTCGC               TGATTAAAGAAATAG  56 38
SH02_RS13630 2728924 .. 2728946 + -16.3  -3.61178   AAAACTAATGCTCTC           CGGCGGCAG GTTTA CTGCCGCCG           TTTCAAATCAGTGAC 100 33
SH02_RS13640 2730618 .. 2730647 +  -7.9  -3.67517   GCCTCAAATTCCTTA       TTGGGTGCCAG AATTAACG CTGACACCCAA        TTTGGCCTCTTAATG  70 48
SH02_RS13680 NONE
SH02_RS13685 2735753 .. 2735779 + -12.3  -4.70659   GTCAGTAATATAAAA         CCGGCTGATAG CGTGC CTTTCAGCCGG         TTTTTGCATCTGGCA 100 33
        fliD NONE
        fliS NONE
SH02_RS13740 NONE
SH02_RS13745 2747349 .. 2747374 + -11.2  -3.90291   AGAGGTGATTTAAAT         TCATCCCCGGC GGCAA GCCGGGGA-GA         TTTCATTACGGCAGT  88 28
SH02_RS13755 NONE
SH02_RS13760 2749421 .. 2749449 + -11.7  -2.83748   TCAGAAGTAATCCCT        CATTCCCGCTGTG ACC CACAGCGGGAACA        TCGTTACCTTTGTAT  81 31
SH02_RS13765 NONE
SH02_RS13770 2750787 .. 2750821 +  -3.5  -4.55295   AATTGCCATGAGCCA     GACGCAGCACATT CTTGCATTC GACGTGCTGCGCC     TTTATTTATCACCAG  65 30
SH02_RS13785 2752529 .. 2752543 +  -4.3  -4.88067   TAACGCCACGCCGGG               TTCAC CGAGA GTGAA               TTTTTCTGCCTGCGT  79 71
        fliF NONE
        fliG NONE
        fliH NONE
        fliI NONE
        fliJ NONE
SH02_RS13820 2759192 .. 2759202 +  -3.2  -2.79831   GCGTGTAACAGGCAA                 CAGC GGC GTTG                 ATATTTTCGCCTAAC  43 1
        fliL NONE
        fliM NONE
        fliN 2761190 .. 2761200 +  -2.4  -3.22298   TCTGAGCGAATGCGC                 CGCC TGA GCCG                 TTAGTGATGAATAAC  43 11
SH02_RS13840 2761555 .. 2761576 +  -4.3  -3.17798   AAAAATTTGCTTAAG           CGTAGCGGG AGAT CCTGATGCG            TCGTTTATTGTCTGT  49 8
        fliP NONE
        fliQ NONE
        fliR 2763357 .. 2763378 +  -2.4   -2.7556   TTTGCTGGCTGATAT           TATTAGTG AATTGC CATTAATA            TAATTCCGTAACGTT  41 1
        rcsA 2764291 .. 2764336 +  -9.7  -2.61126   TTTTGTCAACATGCG CTAACACATTCTGACTGGTGG TTTC CCACCAGTCAGGCTGAATAAG ATTACTCTGCTTTCT  71 22
SH02_RS13870 2765144 .. 2765174 +    -4  -4.12188   TCAGCGGGATCGCTC       CCGAAAAAATCATC TTT GATAATTTGTGCGG       TTTTGAGAATCATCC  61 253
SH02_RS13875 2766383 .. 2766397 +  -3.5  -3.62096   CGCCTGATGACCAAA               GCGGT CATTA ATCGC               TTTAAAATGGTCAAG  53 379
SH02_RS13895 2770653 .. 2770676 +  -3.2  -4.07568   ACGCAACGCCACCGC          CTGTTTGA TTTTTGGC TCAAGCAG           TTTTGCCACCGCGGC  58 516
SH02_RS13925 2774990 .. 2775019 + -13.7   -5.4756   TAAAACTGAACACTA       GCCTGAGTTCG TCCCTCAT CGAACTCAGGC        TTTTTTATTGGCATT 100 69
SH02_RS13935 2776425 .. 2776457 + -10.6    -5.055   AAGCGCATAATCAAT     CGCGGCCGCGTTAGT ACTC AC-GACGTGGCTGCG      TTTTTTCACGGTTAA 100 61
SH02_RS13950 2779090 .. 2779101 +  -5.8  -2.73875   CATAAATATGTAAAA                GCAG ATCT CTGC                 TACTGTTAGGGAGGA  53 43
SH02_RS13955 NONE
SH02_RS13960 2780981 .. 2780995 +  -4.2  -2.84527   GATAAGTAGAACTGA               GAAAGC CAT GCTCTC               GTTTCCTAAGAGTTG  46 185
SH02_RS13965 2781819 .. 2781851 +   -13  -3.14602   TGAACGCAAGCTAGC     TACAGACACGCTCAT CACT ATGA-CGTGTCTGTA      TATTAATAAGCTAAC  95 116
SH02_RS13970 NONE
SH02_RS13975 2782851 .. 2782874 +    -6  -3.94773   TTATGGACTTTGTCC          CGCGGCT-TTA ATC TGACGGCCGCG          TTCCTTTTTTGACTC  66 10
SH02_RS13985 2784130 .. 2784141 +  -4.4  -3.29727   TGATACAGACTCGTT                TTCG GCGA CGAA                 TGTTCATTAATTAAC  51 4
SH02_RS13990 2784417 .. 2784443 + -15.9  -4.34402   TTTTAACATCTTAAG         CGCCCTCGACC TTTAT GGTTGAGGGCG         TTTTGCTATGAACGC 100 115
SH02_RS13995 2791740 .. 2791761 +  -8.7  -5.16572   TTATAATTTCTTAAA           GAGTGTTCC ATTC GGGGCACTC            TTTTTTACATTCCCT 100 48
SH02_RS14005 2794665 .. 2794696 +  -7.2  -2.70854   TCAACGCGCTTGATA      GCCTGGCGAAGATC ATCC GATCTTCGCCTTAC       ACTTTTGTTTCACAT  58 28
SH02_RS14010 2796274 .. 2796306 +  -9.9  -3.34013   TAAGTAAGACACCTG      GCAAATAGCCTGCAA TAA TCGTGGGCTGTTTGC      TTCCTTGGGCGGATA  76 81
SH02_RS14015 2797285 .. 2797319 + -13.9  -2.90382   ATCTCTAATTATCTT     TTAAAGAAATCTGTC TTTAC GGCAGATTTCTTTAA     TCTCATATAATTCTT 100 33
SH02_RS14030 2799642 .. 2799660 +  -5.9  -4.86133   CCAAATTCCTGAAAA             GCCCGCT TTTAT AGCGGGA             TTTTTGCTATATCTG  78 38
SH02_RS14045 2802050 .. 2802067 + -11.3  -5.05505   GCCAAATTCAAAAAA             GCCTGCT TTCT AGCAGGC              TTTTTGCTTTCTAAT 100 37
SH02_RS14095 NONE
SH02_RS14100 2811181 .. 2811208 + -17.8  -5.45652   TGTAACCCTTTACCT        GCCGGTATCCAC GTTT GTGGGTACCGGC         TTTTTTATTCACCCT 100 292
SH02_RS14105 2814366 .. 2814423 +    -7  -3.01791   TGACCTTCTGACAGA ACC-AT-CGCCTCTCTGTGGTCCCGGTCA TCA TGACCGGGACC-CGGACCGGCGCAACGGA TCTTCAACGCCACAT  58 30
SH02_RS14110 NONE
SH02_RS14115 NONE
SH02_RS14120 2816749 .. 2816763 +  -4.3  -3.30124   TGAACTGAGTGGGAA               TTCTG ATGAG CAGAA               TTATCGCCACTACCG  51 33
SH02_RS14125 2817208 .. 2817229 + -10.1  -2.55811   ATAGCCTTCTGCTAC           GGCCTGGTG TTTT CACCACGCC            ACTTTTCCATTTTTA  70 50
SH02_RS14130 NONE
SH02_RS14135 NONE
SH02_RS14140 2817994 .. 2818016 +  -9.9  -4.61873   CTTCATTTCTCCTGA          CGCCAGCCTG AATA CAG-CTGGCG           TTTTCATTTATAAAC 100 56
SH02_RS14145 2818696 .. 2818718 + -16.4  -3.05384   AGAATCAATGAGCAA           TGAGGGTTGC CGG GCAACCCTCA           TTGAATAAAACGGGA 100 87
        sbcB 2824009 .. 2824019 +  -6.8  -2.63991   GTCCTTCTTCTGCCG                 CCCA CTG TGGG                 ATTGCTTCAGTTGCC  52 148
        hisG NONE
        hisD NONE
SH02_RS14220 2833118 .. 2833130 +  -3.3  -3.76224   GTCATTGACGCCTTA                CGTGC GGA GCAAG                TTTGATGAGTCAGAA  53 8
SH02_RS14225 NONE
        hisH NONE
SH02_RS14235 NONE
SH02_RS14240 NONE
SH02_RS14245 2836942 .. 2836965 + -12.4  -5.27335   ATCCGGCAAAAAAAC          GGGCAAGGTG TCAC CACCCTGCCC           TTTTTCTTTAAAACC 100 75
SH02_RS14430 2879377 .. 2879391 +  -7.1  -3.30124   ACGAACGCCTGATGC               GACGC TTTAC GCGTC               TTATCAGGCCTACAG  64 251
SH02_RS14450 2886275 .. 2886288 +  -8.1   -3.4252   CCCATCGCCTGATGC               GACGC TAAC GCGTC                TTATCATGCCTACAA  68 51
SH02_RS14465 2888700 .. 2888740 +  -3.2   -4.9218   TTCGTTAATTGAAAA ATGGCTCAGCAGC-GGC TTAAATCT GCCTGCGCCTGAGCCAG  TTTTTCTGCTGCCTG  71 33
SH02_RS14475 NONE
SH02_RS14490 2894925 .. 2894935 +  -6.8  -3.01712   AAAAAGGAGCACGCT                 CCTG ATG CAGG                 TGTTACCCCCGAGCA  58 21
SH02_RS14495 NONE
SH02_RS14500 NONE
SH02_RS14505 NONE
SH02_RS14510 NONE
SH02_RS14515 2904804 .. 2904821 +  -5.5  -4.18197   ACTTTAATCGGTAAA             CAGCACC TTTA GATGCTG              TTTTCGATACACAAT  65 165
SH02_RS14520 2905213 .. 2905223 +  -4.6  -3.53012   GGGCGTGGGTTGTTG                 GCGT CCG GCGC                 TTTACCAGAGCCCCC  55 51
SH02_RS14525 2906832 .. 2906857 +  -9.8  -4.62085   GGAACCACCTCCTTA         GCCTGTGTAA TCTCCC TTACACGGGC          TTATTTTTTACGCGT 100 162
SH02_RS14545 2909325 .. 2909336 +  -5.8  -3.30124   CGTAATGCCGGATGC                GGTG TAAA CACC                 TTATCCGGCATACAG  57 73
SH02_RS14555 NONE
SH02_RS14560 2911470 .. 2911495 + -12.6  -2.72511   CTGTTTTGCACAATA         C-CGGGCCAGC ATCAC GCTGGCCCGCG         GTTTCAGGGAATGAG  88 431
SH02_RS14605 NONE
SH02_RS14610 NONE
SH02_RS14615 2921762 .. 2921806 + -15.8  -3.79993   GCTGTACTCAATAGG CCGTTGCTGTTGGTCAAGCG CCACT TGCTTGATCACCAGCACCGG TATTTTGCTATCTAA 100 62
SH02_RS14645 2926488 .. 2926506 +  -7.4  -4.08919   CTCTCTGCTCGCTAA             GGATGCTT TTA GGGCATCC             TTTCATTTACACTTT  73 108
SH02_RS14650 2927426 .. 2927442 +  -5.1  -3.28791   TTTATTGTTGCTTTG              TTACCTG TGG CTGGTAA              TTGTGAAACGGGAAT  54 489
SH02_RS14675 2932271 .. 2932286 +  -3.2  -2.65388   CGGGCGAAGAAAACA              GATGAC GGGT GTCAAC               ATTATACGTTAACTG  42 41
        metG 2936009 .. 2936028 + -10.7  -5.01553   ATAATCCCCCTTCAA            GGCGCTG CATCGA CAGCGCC             TTTTCTTTATAAATT 100 37
SH02_RS14695 2937439 .. 2937473 +  -3.5  -3.61398   GAAAGCCATTGCTGC    GTTCCCACA-TGCAGC AATG GCGGCACTGACGGAAC     TTCTTGGGCAAAAAG  53 502
SH02_RS14700 NONE
SH02_RS14705 2943583 .. 2943604 + -11.6  -3.29043   TCCATTAAAACACAG           CGGGCAGT GATGCA ACTGCCCG            TTATCAACACGACTT  86 33
SH02_RS14710 2944112 .. 2944154 +   -16  -2.90725   TTAGGCCTGAAAATA GTAAATAAAAGAACCTGC CTCACCA GCAGGTTTTTTTATTTAC TGTGATCTGCTTTCC 100 184
SH02_RS14715 NONE
SH02_RS14720 NONE
SH02_RS14725 2948757 .. 2948768 +    -3  -3.07816   GGCTTGCGGAGAATC                TTCA GTCA TGAA                 TTCACTACGTCCGGA  46 15
SH02_RS14730 2950843 .. 2950859 + -10.9  -3.46081   TATCCTATATAGCCC              CTGGTGA GAG TCACCAG              TTCCTTGATTAAATA  83 260
SH02_RS14735 2951355 .. 2951385 +   -17  -5.16472   AAGTGAAATAATCGG       TTGGCGGTCATGCT CTA AACATGACCGCCAA       TTTTTTAGCCTTTTT 100 30
SH02_RS14755 NONE
SH02_RS14760 2955782 .. 2955792 +  -6.8  -2.70932   CCGTAAAGGATCAAG                 GCGA TAA TCGC                 TGGTTGCAGACCAAA  53 379
SH02_RS14790 2963630 .. 2963646 + -10.8   -5.8096   GCCGTCTGCCCCGCC              GCCGCC ATTTG GGCGGC              TTTTTGTTTTTTATA 100 91
SH02_RS14805 2966106 .. 2966119 +  -8.1  -4.25104   TACCATGCCTGATAC               GACGC TTGT GCGTC                TTTTCATGCCGACCA  79 88
SH02_RS14820 2968996 .. 2969024 +  -7.3  -3.04398   CACATCCATGTGGGC        TGCCCCGGCCTTC AGG GAACGCCTCGGCA        ATTTTGACGCCACCA  61 292
SH02_RS14830 NONE
SH02_RS14835 2971388 .. 2971398 +  -6.8  -4.87037   GGCTAAAATTTGCGA                 TGCG TCG CGCA                 TTTTTGATGTATGTT  82 35
SH02_RS14840 2972460 .. 2972476 + -10.9  -4.15044   TGGTGTCGAAATTCC              CGGCAAA CAG TTTGCCG              TTTCTTGCGCAAAAC  93 93
SH02_RS14845 NONE
SH02_RS14850 2973555 .. 2973583 +    -6  -3.58242   TACTTCACCTGATAA        GCTGCGGATA TCACATTCC TAACCGCAGC        TATTTGTGAATCTTT  61 77
SH02_RS14855 NONE
SH02_RS14860 2976268 .. 2976299 +   -13  -2.82482   TTGAGCTTATTGTAG      GCCGGATAAAACGC GCCA GCGTTGCATCCGGC       ATTTGGCTCCTGTTG  91 129
SH02_RS14890 2982643 .. 2982674 +  -5.8  -3.21099   AGCGATACGCCCAGT      CC-AGCTGCCATTGC AGG GCGATGGCAGGAAGG      TTAATGGTCACCCCA  55 366
SH02_RS14905 NONE
SH02_RS14910 2985194 .. 2985209 + -11.8  -2.56271   CTGAAGTGAAAGTCC              GCCCGG TTCG CCGGGC               ATCTTCTCATCAGAA  81 32
SH02_RS14930 NONE
SH02_RS14935 NONE
SH02_RS14940 2993246 .. 2993260 +  -7.1  -3.30124   AATGTTGCCGGATGC               GACGC TTAAC GCGTC               TTATCCGGCCTACAA  64 42
SH02_RS14955 2996473 .. 2996492 +  -4.3  -3.28857   ATTATTTTCAATAGC            GCGATTGC CGGAT GCAA-CGC            TTAATACGTTTTATC  51 43
SH02_RS14990 3005837 .. 3005856 +    -5  -3.97443   TGCCCGAAAGGCCCG            TCGCGA GTACTTTG TCGCGA             TATTTTTGACATTTT  61 377
SH02_RS15000 3006484 .. 3006503 +   -10  -5.46129   GCCGCATGCAGAAAA            GGGATAGC TCAG GCTGTCCC             TTTTTTAATTTATTA 100 46
SH02_RS15005 3008163 .. 3008201 +  -8.1  -4.03183   TTTAACGATTTCTGC   GGTTAAAGCGGATGAAG CTCAC CTTCGTCCGCTCTCCCC   TTCTCTTTTCTGCCT  74 36
SH02_RS15010 NONE
SH02_RS15015 3010357 .. 3010368 +  -2.2  -5.61596   AGGTAATTAGTCTCG                TGTC GCTT GGCA                 TTTTTTTATAACGAT  82 374
         spr 3011036 .. 3011053 + -11.3  -5.85244   ACGAGTTAACTGAAA             GCACTGC TTAG GCAGTGC              TTTTTTGTTTTCATT 100 75
SH02_RS15025 NONE
SH02_RS15030 NONE
SH02_RS15035 NONE
SH02_RS15040 NONE
SH02_RS15045 3018410 .. 3018421 +  -2.2  -3.53012   CATGTTGCAGCAAAC                TCGT CCTG GCGA                 TTTACAAACAGGCAC  47 105
SH02_RS15065 3022911 .. 3022936 +  -7.5  -2.70525   AAAGCAGATCACTTA         CCTGTTGCTGG GTCG CCTGTAGCAGG          ATTAATTTAAGAGAG  58 103
SH02_RS15070 3023258 .. 3023287 + -15.9  -2.90219   TTGCTGAATAAGTTG       TAAAAAACCCCGC TCCG GCGGGGTTTTTTG        TATCTGCAGATTATG 100 41
SH02_RS15080 NONE
SH02_RS15085 3026565 .. 3026601 + -12.5  -3.18634   AGACGAGAAGCGTTT    TATCGCTAACTGATTAA TTA TAAATCAGTTAGCGAAA    TATCTTACTTGCAAT  93 13
SH02_RS15090 3026746 .. 3026762 +    -8  -5.76633   AATCCCAAGAAAAAA              CCAACC CTTAC GGTTGG              TTTTTTTATATCTGC 100 43
SH02_RS15110 3031769 .. 3031793 + -11.4  -4.29436   CTTTGTCAACAGTCT          AGCCCGATGG CATCA CCATCGGGCC          TCTTTTTATTTACTC 100 206
SH02_RS15190 NONE
SH02_RS15195 3044921 .. 3044934 +  -8.1  -3.30124   CCGGTTGCCTGATGC               GACGC TGGC GCGTC                TTATCAGGCCTACAC  66 112
SH02_RS15240 NONE
SH02_RS15245 3057278 .. 3057311 + -14.7  -3.55622   GACTAATCACCTGTA     GGCCAGATAAGACGC GTTA GTGTCTTATCTGGCA      TTTGCACCGATTGCC 100 35
SH02_RS15255 NONE
SH02_RS15260 3063701 .. 3063747 + -10.2  -2.90904   TGTATAACACCAAAA CTTGCTATGCAGAAATTTGCAC AGT GCGCAATTTTCTGCATAGCCGC TCATTCTCCTTATAA  76 34
SH02_RS15265 NONE
SH02_RS15270 NONE
SH02_RS15275 NONE
SH02_RS15280 3067745 .. 3067770 + -14.1  -4.64676   ATTAATCAATAAAAA         CACCCGATAGC GAAA GTTATCGGGTG          TTTTCTTGAACATCG 100 36
SH02_RS15320 3080774 .. 3080818 + -12.3  -3.53811   ATGCGACGCTTGCCG CGTCTTATCAGGCCTAC AAATGCTCCCC GTAGGCCGGATAAGGCG TTTACGCCGCATCCG 100 69
SH02_RS15330 3085241 .. 3085253 +  -3.3  -2.64616   TGTTCTAAGCAGCTT                CCCGT ACT ACAGG                TAGTCTGCATGAAAC  42 41
SH02_RS15335 3087712 .. 3087729 +  -7.7  -3.88291   AGCGTGAACGCCTTA             TCCG-GCC TAC GGCTCGGA             TTTGTAGGCCTGATA  72 146
SH02_RS15340 NONE
SH02_RS15345 3089212 .. 3089262 + -13.5  -3.07113   AATCGAGATGTGAAT TGGTTGTAGTGCCAGATACAACGC TTAT GCGTCTTATCTGGC-CTACAACGA TTACATGGCGTAGTA 100 28
SH02_RS15355 3090762 .. 3090793 +    -3  -3.73534   TCAGCTGTACCAGAT      TGAGCTCCATGCCCA TTT TGGGT-TCCAGCTCA      TTCTTAATACGCTTC  53 453
        glpA NONE
SH02_RS15375 NONE
        glpC 3097165 .. 3097192 + -14.2  -4.65895   TAAACTCCTTTCTGA        TGCCCGGTAAGC ATGT GGTTACCGGGCA         TTTTTGCGTACACGA 100 38
SH02_RS15385 3098237 .. 3098261 +    -3  -3.13522   CTGATATTCCGAACT          GTCATTAA AAGGAGAGA TTAATGAC          TATTGCTGAACGGCT  46 18
SH02_RS15390 3098451 .. 3098475 +  -2.7  -3.84825   CCACTAATTAACACA          GGCCCACAG CCGATCC CCATGGGCC          TTTGATATCAATAAC  52 34
SH02_RS15425 3105906 .. 3105927 +  -3.7  -4.79352   ACGACAACCGGGTGC           TGCTGTGCCA GTC TGGC-CAGTG           TTTTATTGTCGATAC  73 512
SH02_RS15435 NONE
SH02_RS15440 NONE
SH02_RS15445 NONE
SH02_RS15450 3111345 .. 3111357 +  -4.1  -2.57985   AATTGCGGGTAGTCG                CTGAT GAA ATCGG                TACGTTACCTTATCG  45 22
        arnT NONE
SH02_RS15460 NONE
SH02_RS15465 3113861 .. 3113886 +  -6.1  -2.58667   AATCCCCCACTTTCA         CGGCGAAGTCA CTCT TCACTTCGGCG          ATCATTTTTATCGCG  50 168
SH02_RS15515 3122985 .. 3123003 +   -11  -3.28712   GCTTATTATTAAAAA             CAGGGCGA AAC TTGCCCTG             TTATCGCAACCCGCG  81 45
SH02_RS15520 3124377 .. 3124419 + -13.7  -3.73224   TAACATCATTGTTAA TTA-ATTCGACCAGTCAGCA AATA TGCTGACTGGTCGAACATAG TTTGCTAAACAGTCA 100 38
SH02_RS15530 NONE
SH02_RS15535 NONE
SH02_RS15545 NONE
SH02_RS15550 3130445 .. 3130463 + -11.7    -2.981   TCTTTTTCAGAAAAA             CCGCCGA GCATG TCGGCGG             CTTTCTGACTTACAA  83 66
SH02_RS15625 3149228 .. 3149254 +  -9.4  -3.28791   CTGTAATCTTAATTT         CACTGCCGGA GATTGCA TCCGGCAGCG         TTATCCCGCCACAAT  74 35
SH02_RS15630 3149909 .. 3149956 + -12.8  -3.28712   CGCTGTAAGCAGCCG GAGTCTG-CGTCGCATCAGGC AATAAGC GCCGGATGCGACATCAGGCTC TTGTCAAAACGGAAA 100 33
SH02_RS15660 3155116 .. 3155143 + -16.4  -4.36914   CTGACTGCCTGATTT        CA-CACCGCCAGC TCA GCTGGCGGTGCTG        TTTTGTAACCCGCCA 100 29
SH02_RS15665 3157372 .. 3157394 + -10.7  -5.64304   CTGCGGATATCTGAA           CCGGAAATA ATCAC TATTTCCGG           TTTTTTATTCTCTTA 100 66
SH02_RS15670 3159051 .. 3159068 + -12.7  -5.32944   CACTAAAAATGTTAA             GAGCCGC AATT GCGGCTC              TTTTTTCATTCTGCC 100 35
SH02_RS15690 NONE
        folX NONE
SH02_RS15700 3163311 .. 3163324 +  -3.7  -3.98214   AAATGCACGAAAACG               CTGGG CATC CCCTG                TTTGTAATACGTAAT  58 295
         flk 3179503 .. 3179515 +  -4.7  -2.78384   GCCAGCGGCCCGGAG                ACGCC GAG GGCGA                TATCCTGAAACGCGG  46 143
        mnmC 3184238 .. 3184249 +  -7.2  -3.30243   GTGTTTGCCGGATGC                GGCG TGAA CGCC                 TTATCCGACCTACGT  64 53
SH02_RS15835 3189631 .. 3189652 + -17.3  -2.72799   CCAGGTACGGGTAAT           GGCAGGGGC GAAT GCCCCTGCC            TGGTGTATCTAAGGG 100 59
SH02_RS15895 3203108 .. 3203128 + -15.5  -3.64822   GTTCGCCTGGATAAA            GTCACCTGC ATA GCAGGTGAC            TTTAACTCCCCCACT 100 47
SH02_RS15900 3204657 .. 3204676 +  -8.6  -5.85425   GATAACAACAAAAAA            GGTGAGTT TTGC GACTCACC             TTTTTTATTTGTTTC 100 172
SH02_RS15910 3206713 .. 3206731 +  -4.5  -2.82516   CGGCAGCGTACTTAC             CCCGC ACTCCATTA GCGGG             TATACTCATGCCGCA  49 65
SH02_RS15915 NONE
SH02_RS15920 3208167 .. 3208200 +    -9  -3.01857   ACAACTATCGAATAG     CACAAAGTCTTGCA ATCCAG TGCAAAGCTTTGTG      TGTATAAGTTTTGTC  68 50
SH02_RS15925 NONE
SH02_RS15930 NONE
SH02_RS15935 3211097 .. 3211111 +  -4.2  -2.56271   ACAACAAACCCCCTC               CAGAAC CAA GTGCTG               ATATTATCATCAACA  45 220
SH02_RS15940 3211901 .. 3211928 +  -8.6  -3.96148   AGCTTGCGTGTAATC        CTCTTTC-ATCTC CAA GGGATAGAAAGAG        TTTGTAGTCGCGGAA  74 381
SH02_RS15975 3214417 .. 3214430 +  -2.5   -4.0942   CATTAATATCATTCT               TAATT AACT AATTA                TTTATCTCATCACTG  57 35
SH02_RS15980 3215313 .. 3215328 + -10.4  -3.86346   TTTCATTACTGCAAA              TGCCCC TGCG GGGGCA               TTTATGGAAACGTAA  86 41
SH02_RS15985 NONE
SH02_RS15990 NONE
SH02_RS15995 3216710 .. 3216722 +  -4.8  -3.20878   AGCGTATTTTTATTA                CCTG ATTTG CAGG                TTCGATTCCCTATTC  51 116
SH02_RS16000 3217112 .. 3217125 +  -2.3  -4.81852   GCCGAATAAGGCACA               CCAGG AACT CGTGG                TTTTATTCATTATGA  66 186
SH02_RS16010 NONE
SH02_RS16015 3220966 .. 3220976 +  -5.4  -3.53224   TATCTGGCAAAAGGC                 CGTT AAT AACG                 TTTCAACGCAGCATC  57 20
SH02_RS16030 3224847 .. 3224869 +  -4.2  -2.71712   TATTTTTCTTCTCTG           TTGTGGTC TTTGGTC GACCATAA           GTTTCGCAGACGAAG  45 62
SH02_RS16035 3228415 .. 3228441 + -10.9  -3.34517   AATGACTAAATAGCG         GCTCCCACAAT GTTCA AATGTGGGAGC         TATTTACCAGCACAT  81 32
SH02_RS16065 NONE
SH02_RS16080 3237040 .. 3237067 + -11.4   -5.4756   TCCCTCCTCAAATCG        GCCATAATAACC TCAT GGTTTTTATGGC         TTTTTTCTTAAGGTT 100 59
SH02_RS16090 NONE
SH02_RS16095 NONE
SH02_RS16100 3242432 .. 3242447 +  -3.3  -3.53444   TTTCAGGGCTAACGT              CAGAA GGTTAA TTCTG               TTTCCAGCAGCGTCA  49 29
SH02_RS16135 3251372 .. 3251389 +  -5.5  -2.77791   GTTATGGCGATGATA             CGGGG CTTTACCT CCCCG              TAATATTGCGTTAAC  50 70
SH02_RS16140 NONE
SH02_RS16145 3252106 .. 3252116 +  -6.8  -2.79796   GACTCATAACCAGAA                 TCCG TGT CGGA                 TCTAATCCCATCAGA  53 281
SH02_RS16155 3254715 .. 3254736 +  -4.4  -3.52073   AAGCCGGGGATAATT           CCCATAAG CGCTAA CTTAAGGG            TTGTGGTATTACGCC  52 55
SH02_RS16160 3255908 .. 3255934 +    -8  -3.14683   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  63 49
SH02_RS16180 NONE
SH02_RS16185 3259655 .. 3259677 +   -12  -4.55887   AGCATAAATAAAAAA           CGGCAGGATA TTA TCTCCTGCCG           TTTATCTTTTTACAC 100 34
SH02_RS16195 NONE
SH02_RS16200 NONE
SH02_RS16205 NONE
SH02_RS16210 3261772 .. 3261802 + -17.1  -2.90212   GCACGACCCACCAAT       GTAAAAAAGCGCC CTAAA GGCGCTTTTTTAC       TATCTGCGATACTCA 100 28
SH02_RS16235 3266338 .. 3266360 + -17.8  -2.56571   TAACTTCTGATTGAT           TACTGCCGGG GCT CCCGGCAGTA           TGAATTCACTCTATA 100 31
SH02_RS16245 3268396 .. 3268428 +  -2.8  -4.25104   CTTAAAGCGGACGCT     TC-AGGGGCTGGAC CAGTTGC GTC-AGCCCCTCGG     TTTTAATCAGCAGCG  59 36
SH02_RS16265 3272705 .. 3272724 + -12.8   -3.7347   CGTTTGTGTGAAACA            GGGGTGGC TTAT GCCGCCCC             TTATTCCATCTTGCA 100 65
SH02_RS16270 3273850 .. 3273865 +    -9  -5.26316   AAAATGCGTAAAAAA              GCACCT TTTT AGGTGC               TTTTTTGTGGCCTGC 100 54
SH02_RS16275 3274451 .. 3274474 +  -4.5  -4.11692   GTTAAACTGATGGCG          GAACTCGAG TAATTT CCCGGGTTC           TTTTAAAAATCAGTC  63 14
SH02_RS16280 NONE
SH02_RS16285 3276804 .. 3276821 + -12.7  -5.71983   TGCCGCAGTGAAAAA             TGGCGCC CATC GGCGCCA              TTTTTTTATGCTTCC 100 45
SH02_RS16295 3278143 .. 3278162 +  -2.1   -3.5394   GATAAAACGGTGCCT            GCGGA AGGAAATTAA TCCGC             TTTGGGAAGGCATTT  47 11
SH02_RS16300 3278961 .. 3279019 +  -8.9  -2.78868   ACAACTGTTAAAAAA GTGCGCTTTGTTTATGCCGGATGCGGCG TAAA CGCCTTATCCGGCCTACA-AAATCGTGC TAATTCAATATATTG  67 62
SH02_RS16340 NONE
        murP NONE
SH02_RS16350 3290036 .. 3290063 + -14.2    -3.767   TGGTCAACAATCTGA        GGCCAGTCAGTA ATGT TACTGCCTGGCC         TTTAATCAATGAATC 100 214
SH02_RS16375 NONE
SH02_RS16380 3295052 .. 3295086 +  -7.1  -4.02456   TTCTCGCAAAACGTC    GCCAGCGCCTGTTGGAC AAA GCCCCACAG-CGC-GGC    TTTATGCTGCTCTTT  70 512
SH02_RS16475 NONE
SH02_RS16480 3315303 .. 3315354 + -15.8  -3.30243   TGATGGTGATTGCCG GATGCTGATTGCCGGATGCGACGC TGAC GCGTCTTATCCGGCCTACAGCGTC TTATCCGGCCTACAT 100 38
SH02_RS16500 NONE
SH02_RS16505 3324371 .. 3324392 +  -8.7  -4.70879   ATAAGCAATAAAAAA           GGCGACATG CCAA TGTGTCGCC            TTTTTCAACTTTCCG 100 37
SH02_RS16510 3324760 .. 3324773 +  -2.5  -3.60925   TTCTTAATGTTTACG               TTAAA AATG TTTAA                TATTATTTAATAGTT  50 160
SH02_RS16515 NONE
SH02_RS16520 3326374 .. 3326389 +  -5.4  -2.82623   CGTATCATGGAACAG              CTCGTC GCCT GATGAG               TGGTTCTGCAAGAGG  50 14
SH02_RS16525 3326643 .. 3326695 + -12.6  -2.52623   CGTAGGCCGGATAAG GCGTTAACGCCGCATCCGGCAATG GTGAA CGATGCCTGATGCGACGCTCACGC GTCTTATCAGGCCAG  86 55
SH02_RS16550 3331656 .. 3331674 +   -11  -3.41878   GCCCAGTTCCTGCCA             GTCGCTGT CAG ACAGCGGC             TTATAAGTTACGGCC  83 110
        gcvR NONE
         bcp 3334655 .. 3334668 +  -5.3  -2.68088   CATACCTCACTTCTC               GTGAT CAAG ATCAC                ATTCTCGCTTTCCCC  49 81
SH02_RS16575 NONE
SH02_RS16580 NONE
        hycD 3338427 .. 3338438 +  -3.6  -2.87211   GCTTGCATGGGTCTT                CTGG TTAA CCGG                 TCTGTAAGGAGCACT  45 7
SH02_RS16590 NONE
        hyfE NONE
SH02_RS16600 NONE
SH02_RS16605 NONE
SH02_RS16610 NONE
SH02_RS16615 NONE
SH02_RS16620 3345519 .. 3345534 +  -6.2  -3.15427   GCCAGAAAAATTGCG              TGAGAA GGAT TTCTCA               TTAATAAGGACTGTT  57 23
SH02_RS16625 3347541 .. 3347555 +  -3.5  -3.31766   TGCAGCGGCTGGGGA               TCTCG GTTCG CGAGG               TGTTGTAATCTGCTT  49 3
SH02_RS16630 3348436 .. 3348469 + -11.7  -2.96444   TCAGGAACCCTGAAA     AATCAGCCCGGCGAA ACAG TTCGTCGGGCTGAAG      ATTATTCTTGCGCGA  83 28
SH02_RS16640 NONE
SH02_RS16645 3352006 .. 3352039 +  -3.7  -4.11484   CCCAGATTCAACTGC     CGCGGTGGACGATCG CCGG TGATCAACAACCGTG      TTTTGCCCGATTCCA  60 443
SH02_RS16665 NONE
        purN 3356541 .. 3356560 + -10.7  -4.74504   CCCCCGTAATTAAAG            CGCCAGC TCTGCC GCTGGCG             TTTTTCAATTCACCT 100 43
SH02_RS16675 NONE
SH02_RS16680 3360313 .. 3360341 + -18.2   -3.6279   CGCCGCTTAATACTT        TGCGGGCCGACG AGAAA TGTCGGCCCGCA        TTATTCAGGCACTTT 100 31
SH02_RS16695 3363186 .. 3363215 +  -2.1  -3.63045   TCGCTGTCGGATGCT       TTTGCTGTTTGGG ATTA TCAAAGCGGCAGA        TATTCTTTCATCTTA  49 79
SH02_RS16700 NONE
SH02_RS16705 3364556 .. 3364585 + -12.3  -3.41693   TAATTCTTGAAGATA       AAAAACCCTCTGT AGTA ACAGAGGGTTTTG        TTCATTCATAGTGCA 100 65
        xseA 3369294 .. 3369330 +  -5.8  -4.09685   TCGATATCAAGCCAT   GCCCGTGCTGACAGAAG TAAT CTACTG-CACCACAGGC    TTTTAACACCTGCAA  68 66
        sseA 3386999 .. 3387042 + -18.4  -2.90194   GAAATAAGTATTTTA CAGGCAATAAAAAACCGCCG AATT TGGCGGTTTTTTATTGCTAG TCTGGTTCGCGGCCT 100 34
SH02_RS16840 3397881 .. 3397892 +  -5.8  -3.18264   TGACGAGTTAAGCGA                CGCT CTGA AGCG                 TTAATGACTCAGGCG  55 10
SH02_RS16845 NONE
SH02_RS16850 3400622 .. 3400638 +  -7.9  -3.17212   TTGCACCACTATCAA              CCACGGC AAC GCCGTAG              TTGCTCCCATAATGC  61 281
SH02_RS16865 NONE
SH02_RS16870 NONE
SH02_RS16875 NONE
SH02_RS16880 NONE
SH02_RS16885 NONE
SH02_RS16890 3407426 .. 3407457 + -16.6    -3.794   CGGCGTTAGGAAAGA      TGCCGGATGCGGCG TGAA CGCCTTATCCGGCA       TTTAATAAATTACAG 100 32
SH02_RS16925 3417727 .. 3417744 + -11.3  -3.23216   GCGATAACGTAGAAA             GGCTTCC CGAA GGAAGCC              TTGATGATCATAAAC  84 45
SH02_RS16935 3420712 .. 3420736 +  -7.1  -2.74192   ACATCCGGCAACCCT          TGACGCGGT TTAAATT GCCGCGTCG          TCCTCTTCACCGGTA  59 61
SH02_RS16965 3431022 .. 3431037 +  -3.2  -4.10552   AATCCGTCGAGGATT              GCGC TTTTTTCT GCGC               TTTAATTTCCTGGCG  58 39
SH02_RS16980 NONE
SH02_RS16985 3433719 .. 3433748 + -12.9  -3.11999   TTTATAGTTATTAAA       GGTGCGTCCGACTG GTT CAC-CGGACGCACC       TTAAGTACGTTTCCT  95 170
SH02_RS17000 3434208 .. 3434244 + -10.9  -4.56597   AATTAAAGTTAAAAA    GTAAAACCCCCGTTC CTTACCA GTTCGGGGGTTTTAC    TTTTTAAAGAGAACG 100 71
SH02_RS17065 3445805 .. 3445825 +  -3.9  -4.08216   AATGCCAGCAGCACC            CGATGCG GCAGTCG CGCTTCG            TTTTCCGCCACATCC  60 137
SH02_RS17075 NONE
SH02_RS17080 3448061 .. 3448086 +  -3.2  -4.82901   CTTTGTCGACAAGTT         AAATGCCGGG TTTAAT CCCGACATTA          TTTTTATCCAGCCAC  68 47
SH02_RS17090 3449671 .. 3449694 + -16.8  -3.22884   TATTAACGAAAAAAA          GCGGAAGAGG TCGC CCTCTTCCGC           TTAGTAACTTGCTAC 100 35
SH02_RS17100 3451109 .. 3451134 + -14.7   -3.0169   AATTTGCGGGGAAAT         GCCGGATGGCA GAGT TGCCACCCGGC          TGATTTATCAGGCTT 100 40
SH02_RS17115 3452812 .. 3452832 + -14.7  -4.50976   TCTCTTTAATCTTAC            CGGGGCGCA TCT TGTGCCCCG            TTTTCTCCTCTGCGA 100 32
SH02_RS17120 NONE
SH02_RS17125 NONE
        pssA 3457740 .. 3457756 +  -9.4  -5.04249   ATCCTGTAATCACAA              CCCCGT CCTGT ACGGGG              TTTGTTTTTTGGAGG 100 32
SH02_RS17135 3458317 .. 3458331 +  -4.3  -3.32022   GGAACATCTCAGCCT               TCAGT ATTCC ACTGA               TTGATGTATAAAAAC  51 240
SH02_RS17185 3470555 .. 3470574 + -10.7   -5.9218   ACCTGAAACACAAAA            CGGCAGC CCTTGA GCTGCCG             TTTTTTTATTCTGTC 100 46
SH02_RS17190 NONE
SH02_RS17195 3471172 .. 3471187 + -11.8   -5.4505   TGAGTGTATCGCCAA              CGCGCC TTCG GGCGCG               TTTTTTGTTGACAGC 100 51
        pheA 3472564 .. 3472591 + -18.6  -2.67428   CAACCTGATGAAAAG        GTGCCGGATGAT GTGA ATCATCCGGCAC         TGGATTATTACTGGC 100 33
SH02_RS17215 NONE
SH02_RS17220 NONE
SH02_RS17225 NONE
SH02_RS17230 3477782 .. 3477803 +  -7.1  -3.62224   CAAACAGATAAAAAA           GGGCCAGCC AATT GGCCAGCCC            TTCTTAACAGGATGT  68 49
SH02_RS17260 3482462 .. 3482479 +  -2.7  -3.64192   CGTTGATCATTATTC             TGATCAT CATG GTGGTCA              TTTCAGCCTATTTTT  50 83
SH02_RS17265 3483718 .. 3483743 + -14.7   -2.6563   GCGGAGTAACGAAAA         CGGCCCGGCAT TCGC ATGCAGGGCCG          TGAATTATTACGAAA 100 32
        ppnK 3485400 .. 3485419 +  -2.2  -2.56601   TATAAAACCAGTTTA            TACTGT ACACAATA ACAGTA             ATGGTTTTTCATACA  39 65
SH02_RS17285 NONE
SH02_RS17290 3487617 .. 3487656 + -12.4  -3.70444   AAAGTTGCTCTCAAA  GACGTTAAAAAAGGTGCTC AAT GAGCACCTTTTTTC-TGTC  TGTTATTTATTCGCT 100 45
        smpB 3489222 .. 3489233 +  -4.4  -3.60792   GGCGCTCATAAATCT                GGTA TACT TACC                 TTTACACATTGGGGC  54 218
SH02_RS17310 3491058 .. 3491083 + -16.3  -3.86897   GTCGGATAAAATATT         TATCAGCCCAG CTCT CTGGGCTGATA          TTTCTAAAAGATCGC 100 32
SH02_RS17320 3492559 .. 3492589 +  -3.3  -2.66695   GGAGTGTAAACATCC      TGCTATTTCCGCCA TTAA TAGCGGAA-TAGCC       ATATTTGCTAAACAA  42 77
SH02_RS17325 3494115 .. 3494131 +  -3.7   -2.7035   CAGTTCGGATAAAAG              CTTGTCA TCT TGATAGG              TAATATATAGGTACA  44 95
SH02_RS17330 3495262 .. 3495283 + -10.9  -3.67296   CGACTTTGCTGCGTA           TACCACGCT TTAC AGCGTGGTG            TTTAACTACATCCTC  81 463
SH02_RS17350 NONE
SH02_RS17355 3501308 .. 3501331 + -16.8  -5.56372   GAACAATCCGATGAA          CGGCAGAACC TCGC GGTTCTGCCG           TTTTTGTTTTACTTT 100 327
SH02_RS17360 3502254 .. 3502277 +   -16  -4.88895   CCTATTATTCTCCGA          GCCCTGTCGC AAGT GCGGCAGGGC           TTTCTTTATTTGTTT 100 55
SH02_RS17365 3503251 .. 3503274 +  -4.6  -2.61582   TTACATCTGGCTTTT          GCAGAAATAA AAAA TAGTTTCTGC           GTTGTCCATACCCTG  48 139
SH02_RS17370 NONE
SH02_RS17375 NONE
SH02_RS17380 NONE
SH02_RS17385 3505292 .. 3505318 +  -8.6   -5.1471   TTCCCTACCATAACA         ACCCTGATTGCC TCC GGCGGTCGGGGG         TTTCTTTTTTCTCCT 100 51
SH02_RS17400 3508680 .. 3508695 + -10.4  -4.92363   TCTTGTAACGCATTT              GGCTCC AATT GGAGCC               TTTTTATGACTATTT 100 33
SH02_RS17405 3510003 .. 3510016 +  -5.2  -2.88366   AGCACCCTGAATCCA               GCGC CATTAT GCGC                ATTATTGATTAAGGA  50 0
SH02_RS17410 3510499 .. 3510514 +  -4.7   -3.6707   CAAATCTATTCGTTC              GCAGA ACACGG TCTGC               TTTGAGGTATTACAT  57 5
SH02_RS17415 NONE
SH02_RS17420 3511767 .. 3511782 + -10.4  -4.90869   CCTGGTAACATGAAA              GCCCAC AGAT GTGGGC               TTTTTCGTTGATGGT 100 359
SH02_RS17460 3521074 .. 3521095 +  -2.9  -4.45664   ATAGAAGGTGGTATC           CCTGGCTAT TAGC AAGGTCAGG            TTTTGATTCCATTCA  61 14
SH02_RS17465 NONE
SH02_RS17470 3522311 .. 3522338 + -15.7  -2.62386   TATAATTTAATGTTA        TATCTGCCCCG ATAAAA CGGGGCAGATA         ATATGTTTAGTTTAC 100 36
SH02_RS17475 NONE
SH02_RS17480 NONE
        gabD NONE
SH02_RS17490 3527697 .. 3527736 + -10.1  -3.53811   GGAGGCGACGCTGCG  CGTCTTGTCCGGCCT ACGGGGATCC AGGTCGGATAAGGCG   TTTACGCCGCATCCG  78 56
SH02_RS17495 NONE
SH02_RS17500 3530015 .. 3530037 + -10.6  -4.63184   AATACGCAACACTTG           CCCCGGATAA ATT TTATCCGGGC           TTTTTAGCATCGGTT 100 53
SH02_RS17515 3531165 .. 3531175 +  -3.2  -3.54935   TATTGTCCGTAAGGA                 GTCA CTA TGGC                 TTTGACAACCATTTC  49 29
SH02_RS17520 3531862 .. 3531879 +  -6.2  -5.00616   GGTGAATTTATATTT             CGCCGG ACGCGG CTGGCG              TTTTTTACCAGCGCG  83 192
SH02_RS17530 3533275 .. 3533297 + -19.2  -3.42283   CCTGACTCTTCTTTT           CGCGACTGGC ATC GCCAGTCGCG           TCTTTAACTGGCTTC 100 36
SH02_RS17540 3534158 .. 3534178 + -12.6  -4.89063   AATACGCGTCTTTGA            CCCCGAAG CCTGT CTTCGGGG            TTTCTTTTTGCCTGG 100 57
SH02_RS17545 NONE
        nrdI NONE
SH02_RS17555 NONE
SH02_RS17560 3538227 .. 3538251 +  -7.2  -5.15381   CTCTGTTGCATTATT          CGCCTGAA ACCACAATA TTCAGGCG          TTTTTTCGCTATCTT  90 140
SH02_RS17565 NONE
SH02_RS17570 3540735 .. 3540753 + -12.4  -3.31144   AAGTAACTCTGCACT             TGCCCGGT GAC GCCGGGCA             TTATCACCCTGCCAA  95 35
        proX 3541786 .. 3541815 +  -9.9   -2.6914   AGTAATTTTTATTCG       GGCGGATAAGGCG TTTT TGCCGCATCCGCC        GTTCTGTGCACAATG  71 36
SH02_RS17580 NONE
SH02_RS17585 NONE
SH02_RS17590 NONE
SH02_RS17595 3544999 .. 3545022 + -12.5  -4.56597   AAAGAAAAAATGACT          GGCCAGCAT CGCAAC ATGCTGGCC           TTTTTGGCAAGCAGG 100 73
SH02_RS17600 NONE
        emrB 3547816 .. 3547835 + -12.2   -5.1848   ACTAAGTACAACTAA            GCCAGTTC ATTT GAACTGGC             TTTTTTCAATTAATT 100 36
SH02_RS17670 3555889 .. 3555904 +  -3.2   -3.6692   TTCTGAAAAGACAGT              TGGCAA AGGT TCGCCA               TATTTTCGCGTCGCC  51 165
SH02_RS17690 3557813 .. 3557845 +  -4.4  -4.40572   TATGTTCTGTTGAAG     CAATT-ATACTGTAT GCTC ATACAGTATCAAGTG      TTTTGTAGAAATTGT  63 165
        srlA NONE
        srlE NONE
SH02_RS17715 NONE
SH02_RS17720 3562481 .. 3562498 +  -5.5  -3.27475   GACAGTCGATCAATG             TCACCGG CGGT CAGGTGA              TGTTCTGATCAACAG  55 0
SH02_RS17725 NONE
        srlR NONE
SH02_RS17735 3564780 .. 3564817 +  -4.9  -3.55444   TTAATCCTTCAATCC  CAGACGTTTCGCCAGCC GATGCA GGTTGGCG-A-CGTCGG   TTTCCAGCATCCGCG  55 37
SH02_RS17745 NONE
SH02_RS17750 3569076 .. 3569121 +   -12  -3.53811   GATGCGACGCTGGCG CGTCTTATCCGACCTACG GGGACGCATG TGTAGGCCGGATAAGGCG TTTACGCCGCATCCG  91 66
SH02_RS17770 NONE
SH02_RS17775 3576889 .. 3576899 +  -6.8  -4.14243   GCAGTTCACGGATAG                 CGAC GAT GTCG                 TTTTCCGGTGCGCTA  70 510
SH02_RS17820 3584535 .. 3584564 +  -5.8  -3.61398   TGAATTTCGTCGCCG       TGTCGACG-TGTC ATTTC GACATCATCGACA       TTATTCACCGCAGGG  61 512
        hypA NONE
SH02_RS17835 NONE
SH02_RS17840 NONE
SH02_RS17845 NONE
SH02_RS17850 3588294 .. 3588310 + -13.7  -3.72576   AGTCAATGACCTTTT              GCACCGC TTT GCGGTGC              TTTCCTGGAAGAACA 100 65
SH02_RS17855 3590415 .. 3590440 + -14.8  -2.77701   GATTTAACTGCAAAT         TGCCGGACAG ATCTGC CTGTCCGGCA          TACTATTCATGAGGT 100 34
SH02_RS17865 3593651 .. 3593677 + -11.7  -3.01924   CTGGTGTAATAACAA         TTCCCGATAGT CTTTT GCTATCGGGAA         TATTAACGACAACTG  83 32
SH02_RS17870 3594622 .. 3594648 +  -4.2  -3.58536   ACAGACCAAAACTCG         CTGGCGGCTGGC ACT GGCAATCGCCCG         TTTCACCGTGACTTT  53 241
SH02_RS17880 NONE
SH02_RS17885 3597539 .. 3597550 +  -3.6  -5.40072   AAATCTGGCAACTTC                GGTG ATGA CGCC                 TTTTTTTCACGAGCC  80 73
SH02_RS17890 NONE
SH02_RS17895 3599040 .. 3599057 + -11.3  -2.56095   CGTACCCATACATCC             CCCCATC TACG GATGGGG              TAGGTTAACTATAAC  79 63
SH02_RS17900 3600468 .. 3600487 + -12.2  -4.77165   TGACCTTAATAAAAA            GGTCCGAT GGGC ATCGGACC             TTTTATTGTGCACAG 100 38
SH02_RS17965 3611627 .. 3611662 +   -14  -2.65264   GTTTGAAAATGGGAG    CTGGGAGTTCTACCGC AGAG GCGGGGGAACTCCAAG     TGATATCCATCATCG  95 44
SH02_RS18025 NONE
SH02_RS18030 NONE
SH02_RS18035 NONE
SH02_RS18040 3628837 .. 3628851 +  -7.1  -3.30124   TTCAGCGCCTGATGC               GACGC TTGAC GCGTC               TTATCAGGCCTACAA  64 101
SH02_RS18070 NONE
SH02_RS18075 3637414 .. 3637437 +  -6.6  -2.52795   AACATACCTGAATGG          TTATCCCCGC TGAC GCGGGGAACA           TAAGTTCGACAACTT  55 75
SH02_RS18085 NONE
SH02_RS18090 3640589 .. 3640608 + -13.6  -4.66609   CTCAACCATAAAAAA            TGCCAGCC CGGA GGCTGGCA             TTTTTAAATCAGATA 100 41
SH02_RS18130 3651994 .. 3652025 + -10.9  -4.67943   GCGTTTAGCATCAGT      CTCAAACCGGCTC CAGATA GAGCCGGTTTTGG       TTTTCTGTCTTAACG 100 216
        queF 3660198 .. 3660224 +    -3   -2.5805   ATAAATTTTTTCTCA         ATTTTGCGTG CTGGATT CACGCAGAAG         GTTGTGAAAGGTCAT  42 37
SH02_RS18180 3661673 .. 3661694 + -10.1  -4.72556   CGTAATCTCCGCTCC           CCCGGTGAC GTTT GTTGCCGGG            TTTTCTCGTTTTTGG 100 36
SH02_RS18185 3663517 .. 3663536 + -12.8  -3.27786   CAGCTAAGTCCTTTC            GCGCCGCT TTCG GGCGGCGC             TTCCTCCGTTTTAAC 100 34
SH02_RS18190 3664946 .. 3664964 + -12.4  -3.08774   TAATCGCTCTCCAAA             GGCCTCGT TTT GCGAGGCC             TCTTCCCGATTTCTC  93 38
SH02_RS18195 3665806 .. 3665837 + -14.4  -3.32844   GGTACGGTAACGGCG      AGCCGGATACGCCG CAAA CGTCGTATCCGGCA       TTATCACATCAGCGC 100 31
SH02_RS18210 NONE
        fucI 3671414 .. 3671441 + -12.9  -3.01791   ACAAGCAAGAGTGGT        TAGCCGGATAA GCAATG TTATCCGGCTA         TATTGCAGGAGCGAT  95 90
SH02_RS18220 NONE
SH02_RS18225 3673314 .. 3673332 + -13.1  -2.60212   AATCTCATACCGGTA             CGCCCGC ATGAC GCGGGCG             GTTATCGAATGATGG  91 39
SH02_RS18230 3674104 .. 3674125 +  -8.6  -3.21993   ACGGAAAGGGTAGCA           GGCCGGAG ACGACG CCCCGGCC            TTGCCTGTTATCGCT  67 40
SH02_RS18255 NONE
SH02_RS18260 3678984 .. 3679021 + -14.9  -3.92542   GGTTTAAGCACAGAA   CCGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTGA    TTGTTTAACCCTGAC 100 34
SH02_RS18275 NONE
SH02_RS18280 NONE
SH02_RS18285 3681683 .. 3681696 +  -8.1  -6.02919   CAACCAATTATTGAA               CACCC TAAC GGGTG                TTTTTTTGTTTCTGG 100 35
SH02_RS18295 3684574 .. 3684618 + -12.9  -3.37761   GGTAAGCGATGAAAA TCGTCGGATGCGACATGCG TAACACT CGTACGTCGCATCCGGCAA TTACGTTTATTCCCG 100 36
SH02_RS18360 NONE
SH02_RS18365 3703609 .. 3703624 +  -2.5   -5.0917   TACACTGCGAATATT              CGGCA CATAAT TGCTG               TTTGTTTTTTAATCA  73 61
SH02_RS18370 NONE
SH02_RS18375 3705145 .. 3705162 +  -2.6  -4.13945   GTACGCTCTCCTGCG             GGAGGG CGTACT CACTCC              TTTTACCCTCACAGT  57 47
SH02_RS18380 3705483 .. 3705509 +  -7.3  -2.81421   ATTGAACGTTAACAA         ATAAGGTCAGC ATCCG GCTGGCCTTAA         GATTTTTCTCTTTCC  59 29
         tas 3706629 .. 3706656 + -12.8  -3.13403   ATCCGGCACCATAAG        ATTAACGCCGGT TAAA ACCGGCGTTAAA         TATTAATGACGGCGC  95 27
SH02_RS18400 3711659 .. 3711693 +  -9.3  -3.28791   CCAGTAATTCTTCGA    TGGTCTGGCGACGG CGAATCAA CCG-CGCCTGACCA     TTATCAAACAGAACT  69 64
SH02_RS18410 3714348 .. 3714361 +  -2.3  -3.94811   GTGCAACGTGACTCA               ATGGC ATCC GCCAC                TTTATGCATCGTATT  54 427
SH02_RS18440 3721076 .. 3721113 + -16.7   -4.8083   AGCTAATATCAGTTG   TGG-ATGGTTCAAAATTG CTA CAATTTTGAACCATTCCA   TTTTTCATAATATTC 100 35
SH02_RS18445 3722193 .. 3722218 + -11.3  -4.42386   ATCATACTCTGTTTA         TACGGGCATTT ATTG AAATGTCCGTA          TTTTATAAATAGGCC 100 60
SH02_RS18450 NONE
SH02_RS18455 3724265 .. 3724279 +  -2.8  -4.62069   AGGAATTTTTTTAAC               GGAATC CTT GGTTTC               TTTTTCGAGTCCGAA  68 514
SH02_RS18465 3725091 .. 3725106 +  -2.6  -3.96327   ATATTAGTAAAACAA              CTAATG ATGT TATTAG               TTTGTAGTGAACAGT  54 83
SH02_RS18470 3725773 .. 3725810 + -11.5  -2.75614   ATCATTTGGTTAAAT   TTGCTGGTTATAGTG CAGTTAAC CACTATAACCAGCAC    CTCTTATGTTTTCTT  81 49
SH02_RS18475 NONE
SH02_RS18480 3727870 .. 3727895 +  -9.1   -3.6187   CCAAATAAATCATAA         CGAGATACTTT TATA ATAGTATCTCG          TTCCTTTCATTCAAT  75 49
SH02_RS18485 3728430 .. 3728443 +  -2.3   -6.0427   AGGCTTCAGCAAAAT               GAGCC TAAA GCCTC                TTTTTTTTATATAGT  90 50
SH02_RS18545 NONE
SH02_RS18550 NONE
SH02_RS18555 3737966 .. 3737987 + -15.9  -3.08471   CGAAGTAAAAGGATA           TCCGGCCTG AATT CAGGCCGGA            TTCACTGAGGTTATG 100 33
SH02_RS18565 3741449 .. 3741470 + -13.7  -3.24232   GTGAAATAACCCCTC           GGGCCGATC AGCT GGTCGGCCC            TCTATTTCCAGAGGC 100 32
SH02_RS18570 NONE
SH02_RS18575 3743983 .. 3744002 +   -15  -4.71482   ACTCTTCACTTATTC            CCCTCCGG TTCG CCGGAGGG             TTTTTGGAGTTTGCT 100 43
SH02_RS18580 NONE
SH02_RS18585 3746569 .. 3746596 + -10.5  -4.54727   TTTGTCATCAGTCTC        AGGCCGGGTGG GTAATA CCATCCGGCCA         TTTTCATTTAAGCCA 100 211
SH02_RS18600 3749966 .. 3749976 +  -3.2  -2.88544   CCTGGCAAGAGTGGT                 GCGA TTG TTGC                 TCTATCCCCCTAAAC  43 263
SH02_RS18605 3753133 .. 3753143 +  -2.4    -2.867   TCATTATCTGCTGGG                 CCGC GTG GAGG                 TGTAATCATGTTGAT  41 10
SH02_RS18610 3754490 .. 3754512 + -17.8  -3.05384   CATAAATGACAGATG           CCCTCTTCCC GCA GGGAAGAGGG           TTAAATAAGGAAAGA 100 36
SH02_RS18615 NONE
SH02_RS18620 3758186 .. 3758201 + -11.8  -3.73323   ATATAAATAATAAAT              GGCCGC TTCG GCGGCC               TGTTTCTCTGTTTGA  93 35
SH02_RS18625 NONE
SH02_RS18630 NONE
SH02_RS18635 3762484 .. 3762507 + -13.9  -4.41348   GGCAATCTAATAGAT          TCTCCGCGC CTTTCA GCGCGGAGA           TTTCTTTCAGAGAGG 100 31
SH02_RS18650 NONE
SH02_RS18655 NONE
SH02_RS18660 3766954 .. 3766970 +  -7.2  -3.35798   TTTACCTGTCGGCAT              CCGCTC AAAAC GGGCGG              TTGTCGATAAACGCT  64 47
SH02_RS18665 3767609 .. 3767626 +  -8.3  -3.31263   GCTTAAATAAAAAAA             CCCCGAC ATTT GCCGGGG              TTGTGAGCATAACGT  69 31
SH02_RS18695 3774373 .. 3774402 +  -8.5  -3.77188   TACGCCTGATCTCAC       TGACGGCTTAGCG CATA TGCTTTGCCGTCA        TCTTTATCTTTGCGT  75 32
        ygfZ 3776543 .. 3776560 +  -9.1  -3.50572   CCGCCGAGCACGAAG             CCGTGCC AGAT GGCATGG              TTGTATGGAATGCGT  71 285
SH02_RS18725 3779300 .. 3779310 +  -8.2  -2.67244   CGCGTCCAGGCTCGC                 CGCC GCT GGCG                 TGCATTTCGGTATAA  59 234
SH02_RS18770 3790140 .. 3790156 +  -5.1  -2.92618   GTTACAGCCTGCGGC              GGCATCT CGG AGATTCC              CTTCTTATCTGGCAC  52 234
SH02_RS18775 3791124 .. 3791146 + -13.4  -3.66908   GAAGGGATAAAAAAA           CGGGCAAGTC AGT GACCTGCCCG           TTGATTTTCAGAGAA 100 370
SH02_RS18795 3794649 .. 3794671 +  -8.5  -3.45434   TAATCCATCAAATAA           TGCCTGATA GCACA TATCAGGCG           TTGTCCTCACTTCTT  71 38
SH02_RS18800 NONE
SH02_RS18805 NONE
SH02_RS18810 NONE
SH02_RS18815 3800450 .. 3800469 +  -5.6  -4.11216   CACCGTCAGAAAATG            TCCGCGCT CCAC GGCGCTGA             TTTTGGCCATAAAAC  65 205
SH02_RS18890 3816796 .. 3816827 +  -8.6  -3.16323   CGGGTGCCGAACGTA      GGTCGGATAAGGCG TTCA CGCCGCATCCGACA       TTAATGGCACGTTTT  67 160
SH02_RS18910 3820395 .. 3820405 +  -8.2  -4.36914   GCTTTTTATTTAAGC                 CGCG CGC CGCG                 TTTTATACCCCACAA  82 28
SH02_RS18920 3821873 .. 3821891 + -11.7  -5.48213   TCACCTGCGTTCAAA             GGCCAGC CTCGC GCTGGCC             TTTTTCTTTTGGATA 100 48
SH02_RS18925 3823693 .. 3823705 +  -4.7  -3.07787   GCTTCCTCCCATCGC                GGAGG AAG CCACC                TCTTGCAGTCATCTT  51 50
SH02_RS18930 NONE
SH02_RS18935 3825092 .. 3825114 +  -4.7  -4.71061   TACCCCACGCGTACA           ACCGCGTGG GGAGA CGACGCGGA           TTTTTAACTATGCGT  71 73
SH02_RS18940 NONE
SH02_RS18945 3826855 .. 3826895 +  -2.3  -5.00616   TCGTTGAGACTCTGA  GTGACAGCGCCCTTCTTTC CAC GCATACTGGGCGCTGTTGC  TTTTTTGAACCAGGA  68 62
SH02_RS18950 NONE
SH02_RS18955 3828008 .. 3828039 + -11.6  -3.17475   TGGCAGCGGCTATAG      GTCTGATAAGACGC GTTA GCGTCGCATCAGAC       ATTTATTGCCTTTGT  84 127
SH02_RS18965 NONE
SH02_RS18970 3830359 .. 3830388 +  -2.9  -3.21416   ATGCTGCTGCCAGGG       CTGTGGATGGCGTT ATG AATGCCGTA-ACAG       TTAATGATGACGGTC  44 8
SH02_RS18975 NONE
SH02_RS18980 NONE
SH02_RS18985 3832455 .. 3832486 + -11.6  -2.60392   TGGCAGCGGTTGTAG      GTCTGATAAGACGC GCAA GCGTCGCATCAGAC       GTTGATTGCCGGATG  80 87
SH02_RS19020 3838039 .. 3838050 +  -3.6  -3.55761   TACAGCAGTTACGCA                CTGG CGCG CCGG                 TTTAGCGCGTGAGTC  51 9
SH02_RS19025 3838364 .. 3838387 +  -8.9  -3.05384   TAAAAAATAAAAACA          GT-GCCGGAG CACGC CTCCGGCAAC          TTGCATAAAAACAAA  68 31
        mltC 3839646 .. 3839661 +  -2.5  -4.57569   GAATCCCATCATCTC              GCACG GTCAAA TGTGC               TTTTTCAAACACTCA  61 169
SH02_RS19035 3840967 .. 3841006 + -15.2  -3.81146   AGCCACTAATTACGC  AAAGAAAAACGGGTCGCC AGAA GGTGACCCGTTTTTTTTA   TTCTTACTTCAACAC 100 32
SH02_RS19045 3844228 .. 3844241 +  -3.7  -3.65351   TGCCGCTTTCCGCCG               CCTGG ACCG CCTGG                TTTGCCTGACAATGC  53 3
SH02_RS19050 3844446 .. 3844462 + -10.8  -5.10154   ACTAATTCTTAAGAA              CCCGCC CACAA GGCGGG              TTTTTGCTTTTGGAT 100 40
SH02_RS19085 3853543 .. 3853585 +   -13  -3.54424   TAAGACAGAATAATG TAAATGAAGCCGGATGAT ATTAACG ATCATCCGGCTTTATTGA TTTACGAGACTAACA 100 133
SH02_RS19120 3863090 .. 3863109 +  -2.9  -3.33151   CGCCCCAATGCGTTC            CA-GCATG TTATT CATGCCTG            TATTGGTTTCGAGGA  47 89
SH02_RS19130 3865220 .. 3865231 +  -2.2   -2.7186   AATGGCGAAGAAACG                GTCT AAAT AGGC                 TGATTCAAGGCATTT  40 61
SH02_RS19150 3868827 .. 3868849 +  -9.1  -4.08692   AGTCAAAAATGGAAA           TGCCCGATC GCCAG GACCGGGCA           TTTTCAGGAAGGTTA  83 39
SH02_RS19165 3873667 .. 3873680 +  -8.1  -3.30124   CACAATGCCTGATGC               GACGC TGCC GCGTC                TTATCAGGCCTACGA  66 109
SH02_RS19225 3883041 .. 3883055 +  -2.8   -3.1811   ACGTCAGATGGATAA               TGACGT ACC ACATCA               GTTTGTTATCCGGGA  45 139
SH02_RS19235 3884542 .. 3884568 + -14.5  -2.86539   TTTAGGTTAAAAAAA         TGCCCGGTTGT GAAAA GCAACCGGGCA         TCATTGTGAATTCAC 100 31
SH02_RS19255 3887440 .. 3887460 +  -3.3  -3.29459   TTGGACAATTTTGCA            GACATTTTA TTG TGAAAAGTC            TTAAATTGTTGCGTC  47 52
SH02_RS19260 3888223 .. 3888248 + -14.8   -3.5486   CCTGACGATTTTCCC         CGTTCCCGGT TGCTGT ACCGGGAACG          TATTTAATTCCCCTG 100 36
SH02_RS19275 3890569 .. 3890592 + -16.8  -3.25823   TTAAGTTCACAACAC          CTCACCGGAG CCTG CTCCGGTGAG           TTCATATAAAGGAGG 100 86
        dkgA 3891453 .. 3891481 + -10.9  -3.05775   TAACATGCAAATTCT        CCCGGTGGCGGTA ATG TTCCGCTACCGGA        CTTTTCAGAAATCAT  79 38
SH02_RS19285 NONE
SH02_RS19290 3892881 .. 3892912 +  -8.7   -5.0538   GCAGAATGATAAAAA      AATCCCCGGTAGC GTGTCA GTTGCCGGGGATA       TTTTTTAACGTCCAA 100 32
SH02_RS19340 NONE
SH02_RS19345 3905832 .. 3905863 + -14.6  -4.30576   CTGGTAACTTCTCTG      TCTATGAGAGCCGT TAAA ACGACTCTCATAGA       TTTTACTAATAGCAA 100 34
SH02_RS19355 NONE
SH02_RS19360 3907458 .. 3907482 + -14.3  -3.66578   TTAATCCTGCCTTGT          TTGCCCGGCCA TCC TGACCGGGCAA          TGTTCTTTCCTTTAA 100 37
        tolC NONE
SH02_RS19395 NONE
SH02_RS19400 NONE
SH02_RS19405 3915578 .. 3915605 + -14.2  -3.67558   GTTGAATAAGCCACG        ATACCGGATGGC ACTC GCCATCCGGTAA         TTGTTAGCCTATCTG 100 32
SH02_RS19415 3917328 .. 3917348 +  -9.8  -3.31322   AAAACAACATCAGAA            GTTGTCCA GCGCA TGGACAAC            TTCTGCCAGCTTCAC  76 40
SH02_RS19430 3919136 .. 3919174 +  -4.9  -4.24397   ACATTCGTCTTTAAT  GCACTGTAAATTATGA ATTAATCC TC-TAATTTATAGTGC   TTTCTATTACCTTAT  66 41
SH02_RS19435 3919961 .. 3919984 + -12.4  -2.72379   TTACGAGTAATCGCA          TTTGGCCGGG TTCG CCCGGCCACA           TCATTAACGGATTAA  88 31
SH02_RS19440 NONE
SH02_RS19445 NONE
SH02_RS19450 NONE
SH02_RS19455 NONE
SH02_RS19460 3925708 .. 3925723 + -11.8  -3.53164   ATACAAACACTAAAA              CGGGCC ATCA GGCCCG               TTATATCAGTGCTCT  91 47
SH02_RS19470 NONE
SH02_RS19475 3928534 .. 3928556 +  -8.4   -5.4251   CTCTTCCAGGAATAA           TCCCTGGC CCAAAAA GCCGGGGA           TTTTTTATATCTGCG 100 44
SH02_RS19480 NONE
SH02_RS19485 3929740 .. 3929757 +  -7.7  -3.23979   TCACCACGTTTACGC             GCTG-CCG CTA CGGCCAGC             TTCAGTTCCTCTTCG  61 522
SH02_RS19510 NONE
SH02_RS19515 3937186 .. 3937217 +   -13  -2.60392   CAACGACAGTTGTAG      GCCTGATAAGACGC GCAA GCGTCGCATCAGGC       GTTGATTGCCGGATG  91 92
SH02_RS19530 3939628 .. 3939642 +  -5.7  -2.63479   GACCGTTCCCCAACT               CCCAT ATTCC ATGGG               TCATATCGCGCTCTT  47 352
SH02_RS19540 3941348 .. 3941358 +  -2.4  -3.29144   AAAATCTGTCTCACA                 CCCG GAG CGCG                 TTATGAAAAAGATCC  45 9
SH02_RS19545 3941973 .. 3941992 +  -9.3  -4.57073   TCAAATAACCCTCCC            GGAGAGG CTCACC CCTCTCC             TTTTTCGCAGGCATA  95 33
SH02_RS19550 3943652 .. 3943677 +  -3.9    -5.243   GTACAAAATTCCGGA         CGC-GCGTAGAA CAC TTCGCCGCGGCG         TTTTTTCATCATTTC  84 201
        rpsU 3945033 .. 3945059 + -10.9  -4.40882   AGTTGTAGTTGTAAG        GCCGTGC-TTCC GAAA GGAATGCGCGGC         TTATTTTCGTTTATG 100 73
        dnaG 3946941 .. 3946953 +  -4.8  -3.28269   CGTAATTATCGTTGG                CGGT AAACA ACCG                TTGGATTTCAGCGTT  53 125
SH02_RS19570 3948933 .. 3948951 + -11.7  -5.24129   GGCCCTCTGCACAAA             CGCCACC TTTTC GGTGGCG             TTTTTTATCGCCCAC 100 81
SH02_RS19580 3949674 .. 3949695 + -14.5  -5.71295   ACCAGATATAGCAAA           GGCTGACGA GAAA TCGTCAGCC            TTTTTCTTTTTATAT 100 37
SH02_RS19590 3951560 .. 3951589 + -11.3  -3.57144   TTAATGCAGTACCGT       CACCGCGTCTTCC AGTC GGCTGGCGCGGTG        TTTCACCATCGCCGA  89 194
SH02_RS19600 3954868 .. 3954900 + -12.8  -4.82901   AGAAGCGTAATATCA      AATCGGATGGCGAT ACGAC GTCGCCATCCGATC      TTTTTATACGACGCG 100 31
SH02_RS19610 3956447 .. 3956485 + -12.6  -2.64766   CCGTTAAATCCCCTT  ACA-CACTGTCCGGCAA TCGTTT TTGCCGGACAGTGCTGC   CGTTTATTTTCGTGA  88 34
        ebgA NONE
        ebgC NONE
SH02_RS19625 3961683 .. 3961714 + -11.1  -3.05274   AAAAATGAGCAGGCA      TTTTCCCTCTTCCT GGATG AGGA-GAGGGAAAA      TAGTTTCTGCCTTTA  79 52
SH02_RS19630 NONE
SH02_RS19635 3965250 .. 3965261 +  -7.2  -3.30243   ACTGCTGGCGGATGC                GGCG TAAA CGCC                 TTATCCGCCCTACAT  64 47
SH02_RS19640 3967681 .. 3967715 + -10.6  -2.50816   GATTTAAATCGTTAT     TTGAAGCGCCGGATGC AAC GCATCCGGCACGTCGC     GTTAATCAATAAACA  73 34
SH02_RS19665 NONE
SH02_RS19670 3971211 .. 3971225 +  -2.8  -2.87564   AGCATGGCTGTCCGG               CGCA GAAATAA TGCG               TATCTGCGCACGTCG  42 15
SH02_RS19675 3972444 .. 3972463 + -10.8  -5.56673   CCGGGCAACCCGAAA            GGAATACG CAGA CGTATTCC             TTTTTTGTTGTAAGT 100 183
SH02_RS19680 3973687 .. 3973701 +  -5.7  -5.30189   CCAAACGGGGCGAGG               GGACT GACCG AGTCC               TTTTTTGATGTTGTC  86 178
SH02_RS19685 3975186 .. 3975210 + -14.3  -4.44974   TAATTAATTGTTTAA          CCCCTTTCGTC TAC GGCGGAAGGGG          TTTTCTCAACTTTAA 100 34
SH02_RS19705 3980543 .. 3980560 + -12.7   -4.7497   TAGTTTCCCTTCAAA             GCCGCCT TCTC AGGCGGC              TTTTTCATCACTGCG 100 57
SH02_RS19710 3981431 .. 3981450 + -10.7   -4.0942   GAAATTCCTGTCCGA            CAGGCGC TGCAAT GCGCCTG             TTTGTCTCGTCGGTA  93 39
SH02_RS19715 NONE
SH02_RS19720 3982875 .. 3982900 + -11.9   -2.6914   CTGTCTATGATTAAT         GAGGCGGTGGT TAAC ACTACCGCTTC          GTTGTCTGGACAATC  83 89
SH02_RS19725 NONE
SH02_RS19730 NONE
SH02_RS19735 NONE
SH02_RS19740 3984375 .. 3984393 + -12.4  -3.37071   GGTTAACTTCCCTCT             GGCCGGAG CCA TTCCGGCC             TTATCCCTCAAATTT  95 35
SH02_RS19745 3984971 .. 3984988 + -11.3  -4.87626   CTTAACGATAAAAAA             CGAGGAG GAAG CTCCTCG              TTTTTGCTATTGGAG 100 53
SH02_RS19750 3986005 .. 3986022 + -11.3   -2.8664   CTTCGGTTAAAAAAA             GGCACCT TACG AGGTGCC              TCTGATAATTAGCTA  81 31
SH02_RS19755 3986672 .. 3986694 + -10.6  -4.60977   AAAACAAATCTGCTC           GCCGGATG TCTGACT CATCCGGC           TTTTATCATTATGTT 100 39
SH02_RS19760 3987267 .. 3987284 + -12.7  -5.07486   ATTAATCTTAGAATT             GGGGCGA TATT TCGCCCC              TTTTTATTAACAATA 100 36
SH02_RS19770 NONE
SH02_RS19775 3989215 .. 3989226 +  -7.2  -3.30124   CAGGTTGCCGGATGC                GGCG AAAA CGCC                 TTATCCGGCCTACAA  64 44
SH02_RS19835 4002918 .. 4002932 +  -4.2  -3.59402   TTTTGATCGGCGTAG               GCCACA GAA TGTTGC               TTCGTTTACTGTAAC  54 157
SH02_RS19840 4003557 .. 4003571 +  -2.9  -5.23396   CTTTTTTTCACCCGA               TCATT TTAAT AATGA               TTTTTATTGATTATT  73 1
SH02_RS19845 4005150 .. 4005163 +  -9.5  -4.65895   CTCCAAAAGTAAAAA               CCCGC CGAA GCGGG                TTTTTACGTAAAACA 100 385
        garD 4012068 .. 4012085 +    -7  -5.38549   ACGTCCCTCGCAAAA             CATGGC CTTAGT GCCATG              TTTTTATTGTTTAAA  89 52
SH02_RS19875 NONE
SH02_RS19880 4013094 .. 4013112 +  -4.4   -3.1505   TTCGCAGTCCTTCCA             GGCTATCC GCA GGAATGCC             TTCATCAACAATGAT  49 130
SH02_RS19890 NONE
SH02_RS19895 NONE
SH02_RS19900 NONE
SH02_RS19905 4016832 .. 4016855 +  -3.2  -5.12987   TTTGCTCCTTTATTG          GGCCTTCAC TTCCCCC GT-AAGGCC          TTTCTTTTTCTTTCG  75 44
SH02_RS19910 NONE
        kbaY 4019223 .. 4019244 + -10.9  -2.56596   ATTTATCCCAATGTA           CTTCCCGAT TAAT ATCGGGGAG            TGCCTTAATGGAAAA  76 57
SH02_RS19920 NONE
SH02_RS19925 NONE
SH02_RS19930 4021465 .. 4021489 +   -10  -3.90856   TTTTGTAAATGGAAC          GAGGCACTGC GTCTG GTGGTGCCTC          TTTACTTAAGGAATT  86 33
SH02_RS19935 4022290 .. 4022333 +  -2.5  -4.22524   AAATAACATTTGACT GGGTTGAACATAACGCC GATAGCAAAA GGAGTTATGTTCAACAA TTTAATTTTAGATAT  57 102
SH02_RS19940 4023206 .. 4023235 + -19.5  -4.50241   ACCGTTAATACGTTA       GGGCGTTATCTGA CCTG TCAGATAACGCCC        TTTTCCTTCCTCTTT 100 33
SH02_RS19945 NONE
SH02_RS19950 NONE
SH02_RS19955 4027724 .. 4027740 +  -6.5  -5.00616   ACGCCGTGAATTTCT              GCGGC CAGCGCC GCCGC              TTTTTTCAGCGGCAG  83 129
SH02_RS19965 NONE
SH02_RS19970 NONE
SH02_RS19975 NONE
SH02_RS19980 4032196 .. 4032210 +  -7.1  -3.30124   TGTAATGCCTGATGC               GACGC TTGCC GCGTC               TTATCAGGCCTACAA  64 49
SH02_RS19995 4034942 .. 4034952 +  -8.2   -5.4833   CGGCCCACTCATCTG                 CGCG TGG CGCG                 TTTTTTCTTCCGTCA 100 287
SH02_RS20005 4035792 .. 4035803 +  -4.4  -2.87132   ACATAGCCAATGACC                TGAC CTTC GTCA                 TCTGTCGCCACCAGC  47 361
SH02_RS20020 NONE
SH02_RS20025 4038590 .. 4038610 +  -6.3  -3.18264   AACAACTTTAACTAC            TCTTTAATG CAG TATTAAAGA            TTAATCGGTAACAAA  57 60
SH02_RS20030 4040022 .. 4040032 +  -2.4  -4.07568   TGGCGGGGCAAAGGT                 CAGC AAT GCCG                 TTTTCAAGCGGCCCA  56 404
SH02_RS20040 4041142 .. 4041155 +  -6.7  -2.72344   TTTTACAGATTGTGT               TCGCT GTTC AGCGA                TGATTACGCATCACC  56 9
SH02_RS20095 4055180 .. 4055200 +  -8.9  -3.25356   GTAATTCGACATCAA            CCCTGCCCT TCA GGGGTGGGG            TTACCTTGCTTATCC  71 37
SH02_RS20135 4063357 .. 4063384 + -13.6  -3.25946   CACGCTCTGTTCGTT        GATAAAAGGCCGC ATA GCGGCCTTTT-TC        CTTTCTTTACAATAC 100 111
SH02_RS20145 4065753 .. 4065776 +  -8.2  -3.36327   CATCAGGCTGATTTG          GCGTTTATCA TCAG TGATTAACGC           TTGTAAATGAACTCA  69 194
SH02_RS20170 4069883 .. 4069901 +   -16   -2.7386   AATCCCCTCCCCTCA             TCCCGCGC AGC GCGCGGGA             TGGTTCCAGTAAGTT 100 39
SH02_RS20175 4070691 .. 4070706 +  -5.4  -3.68351   GGCACATGCATAAAG              CGGTTT TCAA AGACCG               TTTCGGTGATAAACC  58 341
SH02_RS20215 NONE
SH02_RS20220 NONE
SH02_RS20225 NONE
SH02_RS20230 NONE
SH02_RS20235 NONE
SH02_RS20240 NONE
SH02_RS20245 NONE
SH02_RS20250 4081677 .. 4081701 + -12.9  -2.95459   TAGCATGTGCATGGC          GGTCTGTTGTG CGG CACAACGGGCC          ATTTGTACGGTTAAT  95 54
SH02_RS20255 4082269 .. 4082283 +  -2.1  -3.28712   GTAGTTATTCGGTAA               TGTCT CTTTT AGACG               TTGTGAGGAGAAACA  45 37
SH02_RS20260 NONE
SH02_RS20265 4083414 .. 4083435 + -10.3  -2.75963   CTTTAATTCTGGTTT           TGATGAAGA TTAA TCTTCATCA            CTTTGACATACAACT  75 13
SH02_RS20270 4084429 .. 4084439 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  65 182
SH02_RS20280 NONE
SH02_RS20285 4086484 .. 4086515 +  -2.3  -4.40358   GTCTACTTGTGATAA      C-AATGCCGGACAG GAGTA CTATCAGGCATTCG      TTTTATACGATCGGT  58 29
SH02_RS20290 4087807 .. 4087833 + -12.4  -3.53444   ATTTCAGCGGTTTCG         AATTCTGCAGAC AGT GTCTGCAGAATC         TTTAAAACGAACTAA 100 40
SH02_RS20325 4095088 .. 4095114 + -15.3  -3.23853   AAGTCATTAAAAAGA         CAAAACAGGCC GCCTG GGCCTGTTTTG         TATTACTTCACAACG 100 39
SH02_RS20355 4099438 .. 4099456 + -12.4  -2.83517   ACTAATTTATTTTTC             GGGCGCAG CCA TTGCGCCC             TCCTCTTCTCTCCCT  89 36
SH02_RS20360 4100958 .. 4100987 + -10.7  -3.11192   CGTTAATGTCGTAAA       CCGGGCATCAGGC TTAC GTGTGATGTCCGG        TTAACTCGTGGTATG  79 35
SH02_RS20365 4102128 .. 4102145 +  -9.1  -5.55769   GCTCAAAACAAAAAA             CCGGAGT CTGT GCTCCGG              TTTTTTATTATCCGC 100 48
SH02_RS20375 4104014 .. 4104044 +  -8.2  -3.30039   CCAGGAGCTTTAATC       TCTGCCCCGTCGTT TCT GACGGCGGGGAAAA       TGTTGCTTATCCCTC  69 28
SH02_RS20380 4104667 .. 4104683 + -15.1  -5.78622   TTGTCCGACGATATT              GCCCCCG GTT CGGGGGC              TTTTTTTTGCGCTAA 100 53
SH02_RS20405 4109481 .. 4109495 +  -4.2  -3.90744   CTGGCCCACGCCAAC               CGGCAA ACT TTGCCC               TTCTTTACCGCAGAC  58 219
SH02_RS20445 4120412 .. 4120428 + -10.9  -2.57985   CTTCCACCAGGCTTT              GAACCAG CAG CTGGTTC              TCCGTTCGCTTCTCA  69 216
SH02_RS20455 4123537 .. 4123557 +  -6.7  -2.78696   TATGTTGCTTTGCCT            GGGCGACGC TAC GCTTAGCCC            CTTACTTATTTCTGG  57 266
SH02_RS20465 NONE
SH02_RS20470 4123857 .. 4123875 +    -3  -2.98381   CTTACGTTATAAGAA             GTTCCGTC GAT GATGGCGC             TAATTTCGTGAATTG  44 13
SH02_RS20475 NONE
SH02_RS20480 4126124 .. 4126140 + -13.7   -5.5112   GCTAAAGCGTCAAAA              GGCCGGA TTT TCCGGCC              TTTTTTATTACTGGG 100 45
SH02_RS20485 NONE
        panF NONE
        prmA 4129035 .. 4129049 +  -6.4  -3.86202   CCATCTCAGAGGATT               GGTCAA AGT TTGGCC               TTTCATCTCGTGCAA  65 271
SH02_RS20500 NONE
         fis 4130435 .. 4130460 +  -8.2  -5.29782   ATGCTTGATTAAAAA         GGCGCTACTC GGCATG GGGAAGCGCC          TTTTTTATAGGTGTC 100 55
SH02_RS20510 4131389 .. 4131399 +  -3.2  -2.94202   AAAGGATGTGTAAGC                 CTGG TTT TCAG                 ATTATTCATTTCGTG  44 39
SH02_RS20515 4131652 .. 4131676 +  -5.2  -4.13911   GAATTTACATGACAC          TTAATTCATT CGTTT GATGAATTAA          TTTCGTTATGTTTTC  65 39
SH02_RS20525 NONE
SH02_RS20530 4136986 .. 4137009 +  -8.2   -3.9392   GATAAATCAGAAACA          TAAAGGCGCT TTCG GGTGCCTTTA           TTATTTCCAGTGAAA  77 36
SH02_RS20535 4137457 .. 4137476 + -12.8  -4.59773   CGAAATAACTGAACA            GGGCGCGG AGTT CCGCGCTC             TTTTTAACGATACAG 100 33
SH02_RS20540 4137899 .. 4137922 +  -6.6  -2.75481   AAAAGATGATGATAG          CCACACTGGC TGCC GCCAGCGTGC           TGCTTGCCGTTGCAA  57 73
SH02_RS20545 4138921 .. 4138942 + -13.7  -3.07233   TCGGTGTGAGGTAAC           GAGCGTCGC TACG GCGGCGCTC            TCTTCAGCGTTATGC 100 42
SH02_RS20550 4140129 .. 4140139 +  -2.4  -2.71731   GAATATCTATAACCG                 CCGC ATC GCGA                 TCGTTGAACGCTAAG  40 1
SH02_RS20555 NONE
SH02_RS20560 4142059 .. 4142078 + -13.6  -3.83214   TTCGAAAAGCAAAAA            GGCCATCC TTTC GGATGGCC             TTTCGCTTGATTTGA 100 52
SH02_RS20600 4149015 .. 4149025 +  -3.2  -3.96327   CACCATGCCAGAAAA                 GGAG TTT TTCC                 TTTCTGATAGAACAT  55 412
SH02_RS20635 NONE
         fmt 4154015 .. 4154033 +    -8  -5.01535   TAGTCCACTCTTCTA             AGCCCGGT CTT GCCGGGCG             TTTTTATACTTATGA  95 41
SH02_RS20645 4155354 .. 4155368 +  -3.6  -3.35679   ATAACGGGTCGCGAC               TGATGA AAA TTATCA               TTCTGGGTGCCGGCC  49 45
        trkA 4156734 .. 4156761 + -15.8  -3.89938   CTTTCTTCTTGTAAT        TAATAAGGCGTC TAAT GACGCCTTATTA         TTTCCCTTTGATTAT 100 27
        mscL 4157431 .. 4157449 +  -3.2  -3.06686   TAAGGGATCATGTAG             TAATGC TTCTATC GCATTA             TCCTTTATCTGCCCT  43 184
SH02_RS20825 NONE
SH02_RS20830 4177149 .. 4177171 +    -4  -3.26947   CAACAGTCACGCCCC           TGCGCCATCG TCA CGGTGAGGCA           TTCATATGAGAATTC  51 7
SH02_RS20835 4178634 .. 4178655 +  -4.3  -2.61106   TATGCGCGTCGCCAG           TGCCACGCT GGAG AGCGAAGCA            TGAATTATCGCTATC  45 1
SH02_RS20840 NONE
SH02_RS20845 NONE
SH02_RS20850 NONE
SH02_RS20855 NONE
SH02_RS20860 NONE
SH02_RS20865 NONE
SH02_RS20870 NONE
SH02_RS20875 NONE
SH02_RS20880 4185106 .. 4185133 +    -7  -3.25102   CCTTCTTCGCGGATC        TGTGCTTGCAGA TAAT TTTGCAGGCCCA         TCTTCTGAATCAGAT  61 73
SH02_RS20945 4196702 .. 4196730 + -14.7  -2.85763   ACATTATTGAGGCGT        AAAAAAAGCGGGG ATT CCCCGCTTTTTTG        TCACTTTTTCGGTAT 100 31
SH02_RS20970 NONE
SH02_RS20975 NONE
SH02_RS20980 NONE
SH02_RS20985 4204345 .. 4204363 +  -6.7  -3.38046   GGCAGAGAGATCAAC            CGCACGCG CAAC CGC-TGCG             TCTTTCAGGTCGCGA  59 173
SH02_RS20995 NONE
SH02_RS21000 4205602 .. 4205626 + -16.5  -4.86731   TTAATCCCGTCGGAG          TGGCGCGTTAC CTG GTAGCGCGCCA          TTTTGTTTCCCCCGA 100 37
SH02_RS21005 4207766 .. 4207790 +  -4.2  -3.45571   TAAGGCATTCACGCC          GCATCCGACA TCTTT TGCCTGATGC          TTCGTATTTACGCCC  52 60
SH02_RS21035 4212595 .. 4212622 + -10.5  -4.43213   CTCATTAATTGCTCA        TGCCGGACGGC ACTATC GTCGTCCGGCC         TTTTCCTCTCTTCCC 100 33
SH02_RS21040 NONE
        nirD 4215724 .. 4215744 +  -8.9  -4.68994   CGGTTAATGTTTTAA            CGGGAGGCG CAA TGCCTCCCC            TTTTTGCATGGTCCT 100 34
SH02_RS21050 4216633 .. 4216643 +  -2.4  -3.39895   TTTAATCAAACTGAA                 ACGG CTG CCGG                 TTAATTACTAAGGGG  45 11
        cysG 4218049 .. 4218066 + -11.3  -3.74762   CATTAATTTAACCCG             GGCCAGA GAAT TCTGGCC              TTCTTAATGACTCTT  95 35
SH02_RS21060 4218493 .. 4218520 + -10.6  -4.65722   CCGGTTTAATTGCCC        GACGCCCTCTGGA TTT TCC-GAGGGCGTA        TTTGTTTCTATGTCC 100 65
        frlA NONE
        frlB 4221136 .. 4221157 + -12.9  -3.53343   AATATTAATCCCTCT           CCCGGCCCG GCAA CGGGCCGGA            TTTACGCAAGGAGTT 100 33
SH02_RS21075 NONE
SH02_RS21080 4222797 .. 4222824 + -16.4  -2.80699   GCCTGGTAGGTATAA        CGTTGGCGTGAG CATC TTCACGCCAACG         TGCTGTTACTTGCCG 100 32
SH02_RS21085 4223634 .. 4223676 + -14.9   -4.1899   TAACCGTAGGCCGGA TAAGATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCGTTGAA TTTTACATCCCGTAC 100 38
        mrcA 4244269 .. 4244282 +  -9.5  -4.37711   TGTTCTGATTAAAAA               GGCGC TTCG GCGCC                TTTTCAGTTTGCTGA  88 33
SH02_RS21200 4247447 .. 4247481 +   -18  -3.39142   TTATCGAATAACACG     TTTGCGCGGCAGGTTA TGC TACCCTGTCGCGCAAA     TTGCTTCACTCTGGA 100 30
SH02_RS21205 NONE
SH02_RS21210 NONE
        hslO 4249499 .. 4249522 + -16.8  -4.12188   TCATTAATGAGTATG          TCCGGCAGAG AGGG CTCTGCCGGA           TTTTACGACTAATAC 100 34
SH02_RS21230 4253327 .. 4253348 +   -13  -4.46835   TTATAGAAAGCAAAA           CGGGAGGC ACCTTC GCCTCCCG            TTTATTTACCCTTCT 100 74
        greB 4256145 .. 4256159 +  -3.5  -4.56775   AGAGTCTTAACCTCC               TGCCG ATGGC TGGCA               TTTTTGCCAGCCAGT  65 44
SH02_RS21250 4258644 .. 4258664 + -15.5  -5.06414   TGCCTGACATAAAAG            TGCCGGAGA ATA TCTCCGGCA            TTTTTATTCCACAGC 100 125
        feoA 4259210 .. 4259222 +  -4.1   -3.1478   GGCCTTATTAGAAGT                GGAAG CGG TTTCC                TGTTAATACGGTGAT  49 7
        feoB 4261559 .. 4261570 +  -5.8  -3.29013   GCACCACCGGTGATT                GCCA TTAA TGGC                 TTCACTTATTCAGGT  57 18
SH02_RS21265 4261829 .. 4261853 + -12.2  -5.08824   CGCCTGTTTTGGAAA         GCCCGGTATGC GTCT GCAT-CCGGGC          TTTTTTGCGTGCGGC 100 52
SH02_RS21270 4262871 .. 4262897 + -10.8  -2.71712   AGAAGAGTTGGCTGC         GGCGAGTCAGTA AAG TTCTGTCTCGCC         ATTTCAAAAGCCACC  76 13
SH02_RS21280 NONE
SH02_RS21285 4265059 .. 4265092 +  -8.7  -2.53581   CCCTCTTTTGTAGAT     TGCCCGATGCGACGC TAAA GCGTCATTTCGGGCC      TACGTTGAACATGTG  65 47
SH02_RS21290 4266923 .. 4266935 +  -3.3  -4.93296   AAGCGTTGCGGAAAG                CTTGC GTC GCCAG                TTTTTATACTGGTAA  74 235
SH02_RS21305 4274927 .. 4274954 +  -3.5  -3.78026   GCACTGACGCGCTTT        TCACCGA-CG ACAAAAAAG CGTTCGGTGA        TATTTTCACTTTCGA  56 324
SH02_RS21320 4279198 .. 4279210 +  -6.9  -5.12068   GCTCCGCCACTTTGC                GGGCG ATG CGCTC                TTTTTCTTCGGTCTG  90 519
        glpD NONE
SH02_RS21380 4294588 .. 4294618 +  -3.1  -3.69323   TGGAACGCAATCATC       CCAACGATGGCAC CGACA GTGCCGAGGATGG       TTTCCATCATGGTCC  51 110
SH02_RS21410 4300473 .. 4300497 + -10.1  -2.90723   TGAAGTAAGATAGTG          CCCTTTTTCTG AGA TGGAAAAAGGG          TGTCATTCAAAATCG  73 33
SH02_RS21415 NONE
SH02_RS21420 4302498 .. 4302511 +  -2.3  -3.05384   GAAAATCATTGATAT               GGCCA TGAA TGGCG                TTGGATGCCGGGCAA  42 230
SH02_RS21425 4303374 .. 4303387 +  -5.3  -2.76322   TTTAGAATTTTACCC               GAATC ATAA GATTC                TGATATCTTAAATAA  50 380
SH02_RS21430 4304339 .. 4304351 +  -2.6  -3.53224   CCAGCCCGTAAACGT                TCGG TACGC CCGG                TTTGGCGGAGAAATC  47 482
SH02_RS21440 4306270 .. 4306301 + -16.6  -4.17556   CAGATGCAATCCACA      CCCCAGCGCAGCAAC TCT GCTGC-GCGCTGGGG      TTTATTGACGGTATA 100 73
SH02_RS21500 NONE
SH02_RS21505 4317367 .. 4317385 + -10.3   -2.5785   ATATTAGCAATTTGG             CGGCAAC CCAAA GTTGCCG             ATTAATGATTACTTC  74 54
        rsmD NONE
SH02_RS21540 4324208 .. 4324218 +  -8.2  -3.61268   GTCTGCTCCATTCCT                 CCGC TTT GCGG                 TTTGAAGCTTGCCTC  69 146
SH02_RS21550 4325227 .. 4325246 + -12.2  -3.01984   TCTGATAAAACTTGA            CTCTGGAG TCGA CTCCAGAG             TGTATCCTTCGGTTA  86 36
        zntA NONE
SH02_RS21565 NONE
SH02_RS21570 4329369 .. 4329396 + -13.4  -5.52384   TTTAAGATGATGAGG        CGGCCTCAGGGA CGTG TTCCGGAGGCCG         TTTTTTTAATCGCCA 100 43
SH02_RS21580 NONE
SH02_RS21585 4332441 .. 4332468 +  -7.1  -3.91984   CAGAACAGGTAATCA        GTATGACGAAT ACTTAA AATCGTCATAC         TTATTTCCGCCATCT  72 71
SH02_RS21590 NONE
SH02_RS21595 NONE
        nikC NONE
        nikD NONE
        nikE NONE
SH02_RS21615 4337958 .. 4337969 +    -3  -3.68064   AAAATCTTCAATTCA                TTGT GACC ACAA                 GTTTTTCTTCGCTTT  51 155
SH02_RS21620 NONE
SH02_RS21625 4342706 .. 4342717 +  -2.2  -3.17763   GATAGAAAAAGATAG                CCTT TATG GAGG                 TTCCTGCAATGTCAA  43 110
SH02_RS21630 NONE
SH02_RS21635 4344470 .. 4344511 + -10.3  -3.81755   CTAAAATTCAATAAA TTGCACCGATGCGTAGTC CCTATAA GCTTACGCATCGG-GCAA TTGTATTTACGCCAT  86 142
SH02_RS21675 4354753 .. 4354780 +  -6.4  -5.07486   ACGTACCGGATAAAA        CCAGCGTTGAC CATTTGC GT-AACGCTGG        TTTTTCTTAGGCATC  84 46
SH02_RS21685 4358172 .. 4358193 + -13.7  -5.66684   TGTAATCAGTCTCGA           GCGGGTCAG TTTA CTGGCCCGC            TTTTTTTATGCGTTA 100 217
SH02_RS21695 4359411 .. 4359428 + -14.1  -4.77757   CGACGTGTTCCTGAA             CGCCCGC ATAT GCGGGCG              TTTTGCTTTTTGGCG 100 52
        tppB 4361187 .. 4361210 + -16.8  -4.67641   TATTCTTGCAGAAAG          CAGGGTAGCG TTAT CGCTACCCTG           TTTTAGTTTTACACT 100 42
SH02_RS21715 NONE
SH02_RS21720 4366499 .. 4366525 +   -16  -3.43217   GCGTTAAATGTTAAA         GGGCTAAGAGTA GTG TGCTCTTAGCCC         TTAATTACGTTTCCG 100 34
SH02_RS21730 4366962 .. 4366976 +  -7.1  -5.47218   CTGGAAAGTAAAAAA               CCGAC GCAAA GTCGG               TTTTTTTACATCCGG  95 159
SH02_RS21735 4367734 .. 4367755 +  -5.9  -4.36914   AAAAATTTAGCTAAA           CACATATGA ATTT TCAGATGTG            TTTTATCCGGGAGGC  70 39
SH02_RS21740 NONE
SH02_RS21745 4369560 .. 4369573 +  -8.1  -3.30124   ATTTATGTCGGATGC               GACGC TGGC GCGTC                TTATCCGACCTACAA  66 84
SH02_RS21750 4370910 .. 4370920 +  -5.4  -4.22748   GAAATTCTTCTCGGC                 TGAC TCA GTCA                 TTTCATTTCTTCATG  65 23
SH02_RS21760 4372556 .. 4372578 +  -2.8  -3.06183   ATAATACCATAATAT           TGATTATTAG CAC TTTATAATCA           TTGAATAAAAATAGA  43 29
SH02_RS21765 4373377 .. 4373407 + -12.7  -2.55015   AATAACACCACCGAA       AGATGCAGATGCT TTCTC AGCATCTGCATCA       TGCATTACATCAAAT  86 36
SH02_RS21770 4374546 .. 4374559 +  -2.3  -2.62184   CAGCAATACGGCTGG               GGTCG AGTC CGACG                TGATCTAAAGACAGC  38 519
SH02_RS21790 4376423 .. 4376457 + -15.9  -3.26545   TACCCCGGTTGTCAC     CCGGATCATAGTCAC TTGAT GTGACTATGATCCGA     TTAATACTCTCTCCG 100 42
SH02_RS21795 4377895 .. 4377913 +  -3.1  -6.02345   AATGCTGGCAGGAAC             TGTTGGC AGAAC GGCAACA             TTTTTTTTGTCGTTG 100 188
SH02_RS21805 NONE
SH02_RS21810 4382378 .. 4382411 + -14.8  -3.78953   GTAACGTGTAAATGA     GAGTAAGGTTGAAC ATGAAG GTTCAGCCTTACTC      TTTCCTGCTAACCAT 100 37
        treF 4390084 .. 4390121 + -12.9  -3.52073   GGCGAACCATAATAT   TTTTACAGCCAGCCG CTAACTTC CTGCTGGCTGTAAAA    TTATCCTCTTCAGGA 100 29
SH02_RS21845 NONE
SH02_RS21850 4393281 .. 4393312 +   -13  -2.78596   CCTGGCTCCCCGTAG      GCCGGATAAGATGC GCCA GCATCGCATCCGGC       TATAATGCGCACATA  91 92
SH02_RS21855 4395098 .. 4395122 + -17.3  -3.45434   TCTAAATCTGTTTAA          TTGCCGGATGT CAG ACATCCGGCAA          TTATCATCACTTCTT 100 176
SH02_RS21870 NONE
SH02_RS21875 4399247 .. 4399282 +  -6.9  -3.26471   CAGCTCATCCATAAA    TACCTGATGGTTGTG CTAACT CATCACCATCAGGCA     TTACTGTGCAGGTGG  61 85
SH02_RS21930 NONE
SH02_RS21935 NONE
SH02_RS21940 4420192 .. 4420233 +   -11  -4.60797   TAGAGTCAAGATTAG CCCCCGTGGTGTTGTCAGGT GCAT ACCTG-CAACG-TGCGGGGG TTTTCTCTCTCCAGC 100 286
SH02_RS21955 4421874 .. 4421892 +  -7.3   -4.4715   AGCTGATTGAGTAAA             CCGGAGC GCATG GCCCCGG             TTTTGTGAGTTAACG  78 27
SH02_RS21980 4426073 .. 4426099 +    -5  -4.81249   TGCAGAATTTTCGTA         GGCCTGATAAGC GGA GCGCATCAGGCA         TTTTTGCCTTTGCCA  74 25
SH02_RS22015 NONE
SH02_RS22020 4434193 .. 4434215 + -11.3  -2.66695   TTACCCGCACAGCCA           TTCCCCAGC CGCGA GCTGGGGAG           ATCTTTGGTCAGCAC  73 88
SH02_RS22030 4437254 .. 4437281 + -14.3  -3.82481   CTGTAATCCCTTTCA        TGCCAGGTGAT GCAGAA ATCACCTGGCA         TTCTTCAGTTTTCCT 100 35
SH02_RS22035 4438337 .. 4438370 + -10.5   -4.2528   AGCCGCGACTGCGTA     GAGTAA-AGCCCGA TAATCGC TCGGGCTTTTACTC     TTTATTGGGTTGCAG 100 40
SH02_RS22045 4439833 .. 4439852 + -13.6  -4.08692   CTTTATTGCTGTTTA            CGGTCCTG ATGA CAGGACCG             TTTTCCAACCGATTA 100 52
SH02_RS22050 4440328 .. 4440347 + -11.4  -6.11392   GCACAGAATCTAAGA            TCCCTGCC ATTT GGCGGGGA             TTTTTTTATTTGTTT 100 54
SH02_RS22060 NONE
SH02_RS22065 4442330 .. 4442347 + -12.7  -3.44848   TTAGCGATAAAAAAA             GCCTGCC AGAT GGCAGGC              TATTTAATAACGGCG 100 268
SH02_RS22085 4446927 .. 4446952 + -11.9  -3.11619   GTGAGTTAAGTAAAA         GCCCGGTCA CATTGGAC TGACCGGGC          TTACGTGAGTTATTC  86 32
        xylF 4451958 .. 4451972 +  -4.2  -3.02144   CGTGTTGAGGCCAAC               GCCC ATAATGC GGGC               TGTTGCCCGGCATCC  46 515
        xylF 4452942 .. 4452970 + -12.4   -4.0641   AGCGAGCTGTAAGCG        TTACGCCCCAGC GCGGA GCGGGGGCGTGA        TTTCTCTCCATGCCG 100 29
SH02_RS22125 NONE
SH02_RS22130 4455733 .. 4455764 + -12.4   -4.7078   TTTGATAAAAATTTT      CTCAAAGCCGGTTA CGTA TTACCGGTTTTGAG       TTTTTGCATGATTCA 100 42
SH02_RS22135 4457028 .. 4457039 +  -7.2  -3.30124   GTGGTTGTCGGATGC                GGCG TGAA CGCC                 TTATCCGACCTACCC  64 81
        malS 4460348 .. 4460358 +  -2.4  -3.18912   GCAACAGTAACTTTT                 CCGG CTT CCCG                 TTCGTCAGTACCTCG  43 31
        avtA NONE
SH02_RS22155 4461891 .. 4461921 +  -9.1  -3.53444   CATAAACAAAGCGCA      C-TGTTCCGGCGTT GAGA AACGCCGGAAAACG       TTTCAAACAGGCTGC  73 11
SH02_RS22170 NONE
SH02_RS22175 4465086 .. 4465112 +  -5.2  -3.29144   TAACTATATTAATAA         TTCAGGTTGC TGCACAT GCGACTTGAA         TTATGACAGACATAG  55 86
SH02_RS22180 NONE
SH02_RS22185 4466874 .. 4466888 +  -2.8  -3.33696   CCGATCTCATCATCC               TCCCTT TGA AATGGA               TTAATTAAAAGGAAA  46 3
SH02_RS22190 NONE
SH02_RS22195 NONE
        sgbH NONE
SH02_RS22205 NONE
        araD 4471997 .. 4472033 + -10.8  -2.79796   CTCATTACGATCAAT    CATCGGGCTGTCGGTA ATCTC TTCCGGCAGCTCGCTG    TATCCTGCGCTCGCC  70 426
SH02_RS22220 4474277 .. 4474288 +  -2.2  -3.01001   TCAAGGTTATATTTT                GCTT CCGC GAGC                 TGTGCTTTCAGGCTG  42 521
SH02_RS22235 4475684 .. 4475695 +  -7.2  -3.30124   GTTTATGCCGGATGC                GGCG TGTA CGCC                 TTATCCGGCCTACGG  64 140
SH02_RS22265 4487133 .. 4487143 +  -3.2  -3.17763   ATAAAAAAAGATAGC                 CCTT GTG GAGG                 TTCCTGCAATGTCAA  46 27
SH02_RS22270 4487986 .. 4487996 +  -3.2  -2.56095   ATTGATAAGCTGAAG                 CGTT CAT AGCG                 TGAGTTGCCTATGCA  42 17
SH02_RS22275 4488923 .. 4488933 +  -6.8   -4.0162   AACATATGGGCCATC                 TGGG CAC CCCA                 TTTCTAATATGCAAG  69 211
SH02_RS22280 4489660 .. 4489677 +  -4.1  -3.97308   CCACCTGTTTATACA             GCATAAC TTTA GGTATGC              TTTCGTGTGTTTCAG  59 232
SH02_RS22285 4490635 .. 4490645 +  -3.2  -5.54192   TATATTAATAACTCA                 CTCT CCA GGAG                 TTTTTTTAACTTAGT  82 62
SH02_RS22300 4495013 .. 4495042 + -14.3  -3.38316   TCGTAAGTAATCCAA       TCCCACCCTCTCC ACAT GGAGAAGGTGGGG        TTAATTGCCTGATGC 100 31
SH02_RS22305 NONE
SH02_RS22310 4497355 .. 4497371 +  -2.9  -3.20494   AATTAATCAACGAAT              TGCGCAG TTT TTGAGCA              TGTTAATGATTACGT  44 408
SH02_RS22320 4497941 .. 4497966 + -14.1  -4.86731   GGATCAACAACCTAA         GGGCAATTCTC TGAT GAGGATTGCCC          TTTTCTTTACCAGAC 100 126
SH02_RS22325 NONE
SH02_RS22330 NONE
        lldD 4502004 .. 4502026 +   -12  -2.79302   CAATTTTCTGCTATC           CTGCCCCC GCACTAA GGGGGCAG           TATGCTAAACATCGT  83 199
SH02_RS22340 4502567 .. 4502584 +  -5.6  -3.18681   CATTAGATCCCATCC             CCATAC TCAAAT GTATGG              TTAATACCGTTGAAA  55 91
SH02_RS22370 NONE
SH02_RS22375 NONE
SH02_RS22380 4510237 .. 4510252 +  -3.4  -4.11235   ACCGACTCACTGACG              TATTAT GCAG ATAATA               TTTATATAATGATTG  58 389
        rfaD NONE
SH02_RS22410 NONE
SH02_RS22415 NONE
SH02_RS22420 4519034 .. 4519061 + -14.4  -2.89921   AAGAATAAACAAGTT        TAAGAAGTGAGT TAAA ACTCACTTCTTA         TCTATACAACTTAAT 100 39
SH02_RS22475 NONE
        coaD 4531120 .. 4531151 +  -7.2  -2.62043   GAAGTTAGCGTAGCG      TTTATGCCGGATGG TATG CCATCCGGCGCGCA       TGAATTACTTCTGGC  58 28
SH02_RS22505 NONE
SH02_RS22510 NONE
        slmA 4535907 .. 4535934 +  -9.8  -4.41348   CAGTTGCAGTAATAT        GACGCCGGATGA CTTT TCATCCGGCGAG         TTTCTTTAAACGCCA 100 29
SH02_RS22530 4538391 .. 4538414 +  -3.1  -5.06414   TTCCGCCTTCACAAA          TGCCGCCACT CAAAC AG-AGCGGCA          TTTTTCTTCCCCGCA  71 63
        dinD 4539589 .. 4539601 +  -4.9  -2.65354   AATAGCGATTTCACA                TAACT ACA AGTTA                TCAATTTCCCCTCCC  48 216
SH02_RS22540 4540325 .. 4540350 + -11.9  -3.89354   CAAAACCTGTGATCT         GCTGGGCAG CCAGCCAA CTGCCCAGC          TTCTTGATTTGCGCA 100 45
         gmk 4542896 .. 4542909 +  -3.1  -3.41913   CATGCCCAGTCATTT               CTTCA CCTG TGGAG                CTTTTTAAGTATGGC  49 56
        rpoZ 4543202 .. 4543212 +  -2.4  -2.83082   CGTCGTTAATCACAA                 AGCG GGT CGCC                 CTTGTATCTGTTTGA  41 32
SH02_RS22560 NONE
SH02_RS22565 NONE
SH02_RS22570 4548244 .. 4548265 + -11.5  -3.21912   GCATTTGTCTTTGTT           GCGGCGGCA CTTC TACCGCCGC            TTCATCGGTTAACCG  84 164
SH02_RS22580 4551230 .. 4551250 +  -2.6  -2.72511   GATTGCGCGTAAATC            GTGCATAA CTCCC TTATGTGC            ATTTCACGGGATGGA  41 105
SH02_RS22585 4552991 .. 4553019 + -14.5  -3.08312   GGTAAACATCAATCT        CGCCGGGTACGAC TCA GACGTACCCGGCA        TTCCATCAATAGATT 100 36
SH02_RS22600 NONE
SH02_RS22605 4557727 .. 4557741 +  -3.6   -5.0133   CGACTGGTACTTATT               TGTAAC TCA GTTATA               TTTTTTCGCCCGGTG  73 367
SH02_RS22610 NONE
SH02_RS22615 4560011 .. 4560023 +  -4.1  -3.91072   CCAGGCACCGCGCCA                CCGTT AAA AATGG                TTTCTGCCGCTTTAG  59 51
SH02_RS22625 NONE
SH02_RS22630 4561355 .. 4561368 +  -2.3  -4.45765   GACCAACGCTTCTTT               ACCTG ATAT CAGGA                TTTCTTCATTTTCAC  60 58
SH02_RS22650 4566816 .. 4566834 +    -3  -3.64812   AAGGTGCCTTTAATA             CCATCGGC AGC GCCAATCG             CTTTTTTAGGTACAA  51 297
SH02_RS22690 NONE
SH02_RS22695 NONE
SH02_RS22700 4574479 .. 4574500 + -17.3  -4.79451   TCAAGTCGCACCAAA           GGGGAGCGG GAAA CCGCTCCCC            TTTTATATTTAGCGT 100 48
        emrD 4575933 .. 4575970 +  -5.6  -3.89346   TAAGCGCACGTCACC   GCAGCATCGTCATC AGCTCCATGG GAGAACGATGCTGC    TTTATCAGATCACGC  63 38
SH02_RS22725 4577726 .. 4577736 +  -5.4  -5.31275   AGCGGGCATTATCGT                 CAGA ACT TCTG                 TTTTTTCTCCTCCAC  84 73
SH02_RS22740 4582046 .. 4582069 +  -3.8  -4.08216   CATCCAGAATAGCTT          TGGCGACCGAG GCG CTCGGTA-CCG          TTTTCGACAACGTAA  60 81
SH02_RS22760 4585518 .. 4585532 +  -3.4   -3.0701   TGGCGTAAGAGAGCG               CCGCCG CAC CGCTGG               TTGGATGAAGATTAT  43 114
SH02_RS22780 4589282 .. 4589315 + -13.1   -4.0098   GTAAAGGTTAAACGT     CGCTGCACGACGCCAC GCG GTGGCG-CGGGCAGGG     TTGTTTCCGTTCCGC 100 433
SH02_RS22790 4591584 .. 4591598 +  -5.6  -4.07568   TGGAGATCAGCAAGC               CGCAGA TAA TCGGCG               TTTTACGCGCAAAGC  65 354
SH02_RS22820 4596909 .. 4596953 +   -10  -3.34013   GCAGTAAACCAATAA TCAGTAAGCGGGCAAAC-GCG TTTA TGCTGTTTGCCCGCCCACAGA TTAATTCAGCACATA  76 26
        dnaA NONE
SH02_RS22850 NONE
        recF NONE
        gyrB 4598482 .. 4598505 -  -3.1  -3.30124   TCGTAGGCCTGATAA          GCGTAGCGCA TCAGG CACGCT-CGC          ATGGTTAGCGCCATT  47 39
SH02_RS22835 NONE
SH02_RS22830 4597845 .. 4597872 -    -4  -4.19258   ACACCCGAGGGAAAA        GGGGGATGCAAC GCGC GTTGCGTGCTCC         CTTTTTGCTTAGCGG  61 34
SH02_RS22825 4596906 .. 4596956 - -16.4  -3.57418   TATGCAGTAAACCAA TAATCAGTAAGCGGGCAAAC-GC GTTTAT GCTGTTTGCCCGCCCACAGATTA ATTCAGCACATACTT 100 23
SH02_RS22815 NONE
SH02_RS22810 NONE
SH02_RS22805 NONE
SH02_RS22800 NONE
SH02_RS22795 4591176 .. 4591197 -  -9.4  -4.87807   GCAAGATAGTAAAAA           GCCGATGC CTGACC GCACCGGC            TTTAAGAAAGTGGAT  95 80
SH02_RS22785 4588786 .. 4588840 -  -9.5  -3.24232   TGTTCCGCAAAGACA GC-TCGGTGCGCTCGCGCGTTGA AAAAAGCGAAG CCAACGCGCAAGC-CACCAATGC GGTTATTCCACCGGC  67 61
SH02_RS22775 4587741 .. 4587770 -  -2.1  -3.25169   CTAAGAAGCGAGTAA       GTACCTGCAAATC CGAA GATTCGCATATGC        TCCCTGACGGCGAGC  45 78
SH02_RS22770 4587247 .. 4587267 - -14.7  -5.82172   AGTAAGACAAAAAAA            GCCCCACCA GAA TGGCGGGGC            AAAGAGAATAGCTAG 100 41
SH02_RS22765 4585384 .. 4585418 - -11.5  -3.10071   AAATGCCAGCGAATA    CCAGGTGGAGT-ACCA TTTA CGGCGACTCCACCCGG     AAAAGAGTTAACCGA  84 33
SH02_RS22755 NONE
SH02_RS22750 NONE
SH02_RS22745 4581951 .. 4581983 - -11.3  -3.90922   AGCCGTGCTAAAGAA      TACGGACCAGCACCC AAC GGATGCCAGTCCACA      CAATTAACGTAACTC 100 205
SH02_RS22735 NONE
SH02_RS22730 4577692 .. 4577718 -  -8.7  -3.64259   AAGCAGCCTGAATAA         TGCCCGCCG GGTGATCAT CAGCGGGCA         TTATCGTCAGAACTT  75 32
SH02_RS22720 NONE
SH02_RS22715 4576410 .. 4576426 -  -2.2  -2.80016   CTTCAGCATCAATGA              CCTGAC TTCCT GTCATG              CGACTCTCTCAATAA  41 21
SH02_RS22710 NONE
SH02_RS22685 4573652 .. 4573676 - -10.7  -4.98531   TGCTTAAACGAAAAA         CCCCGCCCGG TTTGCG CCG-GCGGGG          TTTTGGAATCGTGTG 100 53
SH02_RS22680 NONE
SH02_RS22675 4571567 .. 4571594 -  -7.1  -5.75342   GGCGGGTAAAAAAAA        TACGCGCTTACC TTAAC GATAAGCGCG-A        TGTTGTTCAAGCCTT 100 47
SH02_RS22670 NONE
SH02_RS22665 NONE
SH02_RS22660 4567997 .. 4568019 -  -2.7  -3.55444   GGGTTACTCCTGAAA           TGAATACCT GCGTG AGGCATGCA           TTGTAAAAATCAGCA  48 125
        uhpT 4566553 .. 4566571 - -13.1  -5.95946   GGAATAATAAAAAAA             GCCCGGC GTCAT GCCGGGC             AAAAGTCACCAGTTA 100 44
SH02_RS22645 4563216 .. 4563242 -  -2.4  -2.65264   GCATTATCCAGATCA         TGAGTTCT CCTGCGTAATC AGAACTCA         TGATATCTGGAAACC  40 52
SH02_RS22640 4562759 .. 4562775 -  -2.9  -3.97088   GCTGATAAGACGAAA              CGGTTTC AAT GCAACCA              GTGAACGCCCTCGGC  54 14
        nepI 4561326 .. 4561340 -  -2.8  -3.70773   CCGGATATGTAAGAA               CAGCAA CAA CTACTG               ACCAACGCTTCTTTA  50 48
SH02_RS22620 4559789 .. 4559800 -  -4.4  -3.48438   AAGGAGCACAATTAA                TTGG CGGT CCAA                 AAGCCAGCATTTTGA  53 214
SH02_RS22595 NONE
SH02_RS22590 4552989 .. 4553021 -  -9.7  -2.67021   GCGGTAAACATCAAT      CTCGCCGGGTACGAC TCA GACGTACCCGGCATT      CCATCAATAGATTAC  71 37
SH02_RS22575 4547822 .. 4547841 -   -10  -4.36914   TGCTGCTCTACAAAA            CGCCGCTT TCTA AAACGGCG             CAAATTCGCCTGCAA  90 458
        ligB 4540306 .. 4540316 -  -5.4  -3.33361   CACGAAGGACACTAA                 GGTT CAA AACC                 TGTGATCTGCTGGGC  55 11
         rph 4536622 .. 4536639 - -11.3  -6.06529   TACAGACAAAAAAAA             GGCGACT CATC AGTCGCC              TTAAAAATCAGTTTG 100 33
        pyrE 4535909 .. 4535932 - -16.8  -2.77523   GTTGCAGTAATATGA          CGCCGGATGA CTTT TCATCCGGCG           AGTTTCTTTAAACGC 100 33
SH02_RS22500 4532678 .. 4532691 -  -6.7   -4.2074   TCCCGAACAGACAAA               GATCC CGAA GGATC                GCGCATAGCGGGTTA  71 38
        rpmB NONE
        rpmG 4532013 .. 4532048 - -18.6  -2.90194   ATGGGGGCAAGCAGA    TAACAAAAAACCCCGC CGGA GCGAGGTTTTTTGTTA     CATCAAAGCGAGAAT 100 40
SH02_RS22485 4531085 .. 4531104 -  -7.2  -2.57132   TTCCTGCCGGAGAAT            GTCCATCAG GCG CTGATGG-C            GAAGTTAGCGTAGCG  58 77
SH02_RS22470 NONE
SH02_RS22465 NONE
SH02_RS22460 NONE
SH02_RS22455 4524967 .. 4524979 -  -6.3  -2.50307   GAAACTCTCATTAAT                TGAGT AAA ACTCA                CTGTTTTAACGGTTT  53 40
SH02_RS22450 NONE
SH02_RS22445 NONE
SH02_RS22440 NONE
SH02_RS22435 4521045 .. 4521060 -    -4  -3.04894   AACTCCGCTTAAAAC              TGTCCT GGTG AAGACA               TGTAATTGTGGGATT  47 45
SH02_RS22430 NONE
SH02_RS22425 4519033 .. 4519062 - -10.9  -2.50354   TAAGAATAAACAAGT       TTAAGAAGTGAGT TAAA ACTCACTTCTTAT        CTATACAACTTAATC  76 15
SH02_RS22400 4513565 .. 4513594 - -13.1  -4.99035   GCATTGATATAAAAA       GAAAAAATGATGC CAAA GCATCATTTTTCC        TATCTCAGTTGGTAT 100 70
SH02_RS22395 NONE
         tdh 4511106 .. 4511123 - -12.7  -4.53303   TATCCTCAGATAAAA             GGGCTGG AATA CCAGCCC              TTGTTCGTGTTAATC 100 35
SH02_RS22385 4509666 .. 4509686 -  -8.2  -4.59109   TACACCGCCGAAAAA            CGCTGTGC CTGAT GCACCGCG            TAATCCGTTCCGTGG  88 199
SH02_RS22365 4505311 .. 4505323 -  -5.5  -4.25283   AGGGCGGCAGCAAAA                TGGAG TGT CCCCA                GAAGCTTATAACAAT  68 99
SH02_RS22360 NONE
SH02_RS22355 NONE
SH02_RS22350 4503403 .. 4503425 - -13.4  -2.90888   ACGATGAGATAATGA           CCGGCCCG TTCTGCG CGGGCCGG           GTCATAGCGGTAACA 100 55
        cysE 4502153 .. 4502172 -  -5.6  -3.40403   TGCCTGGGACGATAA            GCGCCTGCG CCG CGCGGG-GC            TGGACTATCACGAGT  54 407
SH02_RS22315 4496969 .. 4496987 -  -8.2  -4.10855   AAAAGCCTTTCAAAA             GTAAGCAA CGT CTGCTTAC             TGCCCCTCTACCTGC  79 22
SH02_RS22295 4492188 .. 4492203 -    -4  -3.41416   TTAAAACAATCAATA              GATCCA TAAT TAGATC               TCCGGGAACGTGGAA  52 19
SH02_RS22290 4491026 .. 4491038 -  -3.3  -3.30619   AATTAGTCCTTACAA                GGAGC AAA GTTCC                ATAATCTCCCCCCTC  47 45
SH02_RS22260 4482084 .. 4482106 -  -5.5  -3.14463   AACCTGGCTGATCAA           GGCCCTCTC ACACG GAGAAGGGC           GTTTAACATAACCAC  53 81
SH02_RS22255 NONE
SH02_RS22250 4478745 .. 4478771 -  -8.1  -5.13741   TTAATCTAATAAAAA         GCACATTGTAT TCATT AAACAATGTGC         TTTTTTTAAATTCAT  95 86
SH02_RS22245 4477454 .. 4477476 -  -6.2  -4.65838   GAGATAGTTGAAAAA           GCGGCTAACA ATT TGCCAGCCGT           TGTGGAAATGATGAT  77 40
SH02_RS22240 4475734 .. 4475747 -  -8.1   -3.4252   CCGTAGGCATGATAA               GACGC GTAA GCGTC                GCATCAGGCAATGAA  68 66
SH02_RS22230 NONE
SH02_RS22225 4473718 .. 4473770 - -11.4  -2.72043   AATGCTGCGTGAAAT TCGCCACCAGCTTGCTCA-GTCGCAG CAA CTGCGGCCTGAACAAGC-GGCGGAAA GCGAAGATTAATGAT  80 33
SH02_RS22215 4471597 .. 4471634 -  -7.6  -3.15861   TATTACGGGCAGTAA   TCCCTCACGCCGGGGC TTCATC GCCCCGGCACTACGAA    TTGATATGTTCCTTG  63 334
SH02_RS22165 NONE
SH02_RS22160 4461600 .. 4461612 -  -9.1  -3.54741   TATCAGCGCCTGAAA                GCACG CGG CGTGC                TGATGGTGCCGGGGC  71 337
SH02_RS22140 4457124 .. 4457153 - -19.5  -5.07011   GAGACAAAGTAAAAA       GCCTTATCCGACT GACA AGTCGGATAAGGC        TCAAGGAAATGCAAT 100 40
SH02_RS22115 4451326 .. 4451340 -  -6.4  -2.72973   TGAAAAAGGCAGAAT               CTCTCG GCG CGAAAG               TATTTGTACAGTCTG  51 167
SH02_RS22105 4449431 .. 4449459 -  -9.6  -5.40072   CGTTCCTTAAAAAAA       TGCCCGG-TATCG CTAC CGATAACCGGGCC        AACGGACTGCACAGT 100 47
SH02_RS22100 4447925 .. 4447948 -  -8.8  -2.75039   TATAGATGTGAATTA          TCCCCCACCC GGTC AGGCAGGGGA           TAACGTTTACGCCAT  67 32
SH02_RS22095 NONE
SH02_RS22090 4446927 .. 4446952 - -11.9  -4.43477   GTGAGTTAAGTAAAA         GCCCGGTCA CATTGGAC TGACCGGGC          TTACGTGAGTTATTC 100 35
SH02_RS22080 NONE
SH02_RS22075 NONE
        glyS 4442330 .. 4442347 - -12.7  -5.64274   TTAGCGATAAAAAAA             GCCTGCC AGAT GGCAGGC              TATTTAATAACGGCG 100 44
SH02_RS22055 4440458 .. 4440477 - -13.6   -3.3482   CAACGCCGTAAGTAA            GGCGGGAA TAAT TTCCCGCC             GAAGACTCTTACTCT 100 34
SH02_RS22040 4438344 .. 4438362 -  -7.4  -3.83205   ACTGCGTAGAGTAAA             GCCCGA TAATCGC TCGGGC             TTTTACTCTTTATTG  70 35
SH02_RS22025 4433785 .. 4433829 -    -2  -2.85657   TATAAAAGCGAATTA CTGGCGTGACTG-CATTCCGC TGGT GCGGGATGCCTATCTTGCCAA CGCGCAAAACTGGGT  41 295
SH02_RS22010 4432125 .. 4432139 -  -6.4  -4.56775   ATGCCTGGGGAAAAA               CGGCAT GAA ATGCCA               TCAGAACGGAATGAA  74 160
SH02_RS22005 4430735 .. 4430752 -  -8.4  -4.88129   AAAAAGCAGTAAAAA             GGGCCA GTTAAT TGGCCC              AAATTTTACGAGTCA 100 110
SH02_RS22000 4428733 .. 4428743 -  -6.8  -3.13164   GCGCCAATCACCGAA                 TGCG GGG CGCA                 TCTTACTGCGCAGAT  59 104
SH02_RS21995 4428625 .. 4428643 - -14.6   -5.1287   TGCAGATGCAAAAAA             GCCTGCTC GTT GAGCAGGC             TTTTCGAATTTGGTC 100 36
SH02_RS21990 4427918 .. 4427929 -  -4.4  -3.35679   CCTCGTGACCTACAA                TCTG TCAA CAGA                 ATGTGAAAACGTCAA  51 191
SH02_RS21985 4425888 .. 4425918 -  -3.9  -3.86897   TGTATTGCTCACAAA       TCAATTCCCGCCC TTATC GGACAGGGAATGA       AGTATTGCTGCCGGA  58 243
SH02_RS21975 NONE
SH02_RS21970 NONE
        dppD NONE
        dppF 4421874 .. 4421892 -  -9.5  -3.76402   AGCTGATTGAGTAAA             CCGGAGC GCATG GCCCCGG             TTTTGTGAGTTAACG  81 35
SH02_RS21950 NONE
SH02_RS21945 4419942 .. 4419967 -   -14  -5.00339   AGTAAGAACGAAAAA         GGCCGCAGAG TTTCCC CCCTGCGGCC          TGGTCCGGGCGCAAA 100 76
SH02_RS21925 4415178 .. 4415192 -  -4.3  -4.56729   ACGAAAAGACTAAAA               TCACA CGTCT TGTGA               CCTTCTAAATTGATT  66 248
SH02_RS21920 NONE
SH02_RS21915 NONE
        bcsA NONE
SH02_RS21905 NONE
SH02_RS21900 NONE
SH02_RS21895 NONE
SH02_RS21890 4402410 .. 4402431 -  -4.4   -4.7657   CAAAAAGGTTAAAAA           GTTTGAGC TGGCTC GCACAAAC            CAGCACTTTTTAAAG  71 63
SH02_RS21885 4400906 .. 4400934 -   -14  -4.52669   AAGAAGTGAAATAAA        CCTGAACTCACC CAGGT GGTAAGTTCAGG        CACAGGGGTCAATTA 100 91
SH02_RS21880 4399206 .. 4399235 - -11.5  -3.14487   CAGCATATGCAAAAG       GCTGGATAAAGTG TTAC CCCTCTATCCAGC        TCATCCATAAATACC  84 73
SH02_RS21865 4397253 .. 4397268 -  -5.4  -3.09004   CCAGGCGGAAAATGA              GGCAGCT TAT AGC-GCC              AGAACCGCCGTATTC  53 16
SH02_RS21860 4394960 .. 4394984 -  -8.5  -4.32048   TAATAAGAGTGAAAA          GCCTGATGCGC TAC GCTTATCAGGC          CTGAATTTCCATACA  82 170
SH02_RS21840 4390084 .. 4390121 - -12.9  -2.59447   GGCGAACCATAATAT   TTTTACAGCCAGCCG CTAACTTC CTGCTGGCTGTAAAA    TTATCCTCTTCAGGA  91 35
SH02_RS21830 4386595 .. 4386620 - -14.1  -5.08601   TTATCGTAATAAAAA         TCGCCCAAACA TTGC TGTTCGGGCGA          TCAAATTAATTATTG 100 35
SH02_RS21825 4384961 .. 4384999 - -16.1  -3.56142   GCGATTAATAAGCAA   CCGAATGCCCAGCTGTT TTTTT AAAGGCTGGGCATTCGG   TTTTTACAACGTTAT 100 45
SH02_RS21820 4383542 .. 4383557 -  -3.2  -4.62069   TTCTTAGCGCAAAAA              CTGCCA GATT TGGTAG               GACCAAAATTTATCC  65 293
SH02_RS21815 4382378 .. 4382411 - -12.6  -2.92667   GTAACGTGTAAATGA     GAGTAAGGTTGAAC ATGAAG GTTCAGCCTTACTC      TTTCCTGCTAACCAT  93 343
SH02_RS21800 4377275 .. 4377286 -    -3  -3.88618   AAGATAATCACGAAA                TGAT AAAA ATCA                 ATTCCCTGTCAGAGA  55 472
SH02_RS21785 4375163 .. 4375210 - -10.8  -3.00259   TATAGAGATTATATA TGAACAGG-AGGAATAGCTGCTT TTA AAGAAGATATTCCGGCCTGTTCA ATATGCAAGGAAGTA  79 62
        hdeB 4374757 .. 4374787 - -14.8  -4.93595   ATAAAAATGCAAAAA       GGAGCAGCAAGATG GCT CAACTTGCTACTCC       TTTTTACTTGCACCT 100 43
SH02_RS21775 4373884 .. 4373894 -  -5.4  -3.23853   TTCGCGCAAGCAACA                 TCAG GTT CTGA                 GCTGCATTGCGAATC  52 225
SH02_RS21755 4370787 .. 4370801 -   -10  -2.92026   GATTTCAATATGACA               GGACAG AAC CTGTCC               GGGTTCGTTCTAACC  68 245
SH02_RS21725 4366499 .. 4366525 - -13.8  -3.71649   GCGTTAAATGTTAAA         GGGCTAAGAGTA GTG TGCTCTTAGCCC         TTAATTACGTTTCCG 100 44
SH02_RS21710 NONE
SH02_RS21705 4361186 .. 4361211 - -13.3  -3.86346   TTATTCTTGCAGAAA         GCAGGGTAGCG TTAT CGCTACCCTGT          TTTAGTTTTACACTG 100 33
SH02_RS21690 4357999 .. 4358016 -  -8.3  -3.14218   TACGCACCAAAACGA             GCGGGTC AGCT GGCCCGC              TTCAGATTGTGACAT  67 233
SH02_RS21680 4354840 .. 4354853 -  -3.1  -5.37345   GTTAAGTATAAAAAA               CAGCA AAGT TACTG                TTTTTTTCAACCTGT  79 219
SH02_RS21670 4353487 .. 4353501 -  -2.9  -3.00046   TAAAAAACAACAGCA               TAAGA ATTAA TCTTA               GGATAAATTTTTATT  43 134
SH02_RS21665 NONE
SH02_RS21660 4351591 .. 4351627 -  -9.6  -3.60074   GAGAAAGTCCCTAAA    GATTGTAGAGGCGT CATCAGAAC ATGCCTCTACAATC    GATTAAGAAAACCTA  78 89
SH02_RS21655 4349685 .. 4349708 -  -5.3  -4.37658   AACTGGCTGACAAAA          CGGTATCCA TCCTGT TGGATAGCG           TTTCACGCCTGTTCA  68 124
SH02_RS21650 NONE
SH02_RS21645 NONE
SH02_RS21640 4344470 .. 4344511 -  -9.5  -4.32607   CTAAAATTCAATAAA TTGCACCGATGCGTAGTCCC TAT AAGCTTACGCATCGG-GCAA TTGTATTTACGCCAT  88 32
SH02_RS21575 4329115 .. 4329137 -  -7.6  -3.27923   CTGGAAGATCAGCAA           CGTAGCCGCG ATC CGCAGCTGCA           AGTGGTAACCAATAA  62 243
SH02_RS21560 4327495 .. 4327520 -  -8.3  -3.83724   AGGAGATAAGGCAAA         CCGATCGCA ACATTGAG CGCGATCGG          TCCCCTCGCCCCTCT  75 95
SH02_RS21545 4324005 .. 4324043 -  -6.8  -2.62263   ATGGCCCGCAGATGA  CCACCGCCGAAAAGGTA CGGATT TTCCTTTTCGGCG-TGT   TTGAACTGCTGGCCT  52 72
SH02_RS21530 NONE
SH02_RS21525 NONE
        ftsX 4319809 .. 4319858 -  -5.7  -3.68292   ACCGGGAAGAGACAA CGGGGT-CTCTTTCCCTGCTACGG AAC CCATTGCAGGGAAAGAGTATAACA CGCTTTTATTATTCA  61 34
SH02_RS21515 4318727 .. 4318746 -  -7.8  -5.75538   CCCAAAAAACAAAAA            CCCCGGAC TCTC ATCCAGGG             TTCTCTGCTTAATAG 100 47
SH02_RS21510 4317314 .. 4317325 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCATGAAG  64 94
SH02_RS21495 4315261 .. 4315281 - -14.7  -2.73159   GTAACCTTTCTAAAC            CCGCCCGCA TTT TACGGGCGG            TGGGATGATCACTTG 100 34
SH02_RS21490 NONE
        livM 4313035 .. 4313048 -  -3.1  -2.97503   TTAACAGATAATAAT               GGC-TG ACT CATGCC               TGCTCTCCTTTCGCT  44 19
        livG NONE
        livF 4311529 .. 4311544 -    -9  -3.53811   GTCACCTGTCTCAAA              GGAGTC TTTT GACTCC               CTATCAATCAACGTG  73 44
SH02_RS21470 4311366 .. 4311378 -  -4.1  -2.89304   GGGAAAATATAGAAG                GTCTG AAT CAAAC                TCTACAGATTGCTCA  46 46
SH02_RS21465 NONE
SH02_RS21460 NONE
SH02_RS21455 NONE
        ugpC NONE
        ugpQ 4306156 .. 4306189 -  -9.5   -4.0162   GCCGGAGAGGAGAAA     CGGCGACATGCTGAA TCAG CCCAGCACGCCGCAG      CCTGACATTCCGTTG  81 45
         ggt 4303890 .. 4303911 - -14.5  -3.79419   TGCCCTGACAAAATA           GCCCTCTTC CCAC GAAGAGGGC            CGCTAACCTTAGTAC 100 34
SH02_RS21405 4298550 .. 4298565 -  -3.2  -2.94099   GCCTGGGATGATAGA              GGGTGA AAAT TGACCC               CTCTGTTCAAAAAAA  44 67
SH02_RS21400 4297708 .. 4297739 -   -10  -4.10429   AACGACGCGGCAAAA      CCCCGGAAGCGTAC ATCA GCACGCGACCGGAG       CGAGCGAGGAAGCCT  88 75
SH02_RS21395 4296463 .. 4296489 -  -5.2  -5.01845   TACAAGAATTAAAAA         TGTTACGGGTAA CTG TTATCGGTAACA         TTGTCCAGCCGGACA  78 106
        gntK NONE
SH02_RS21385 4294527 .. 4294550 - -10.3  -4.17048   GTTTTTCGAAAAGAA          CCCGGTAGC GTCACA ACTACCGGG           CGAACAAACTTAACT  91 35
SH02_RS21375 4292578 .. 4292595 -  -9.8  -3.15996   TATTACGCACTAACA             GGGGCG GCATCG CGCCCC              AGATTTAATGAATAA  74 44
SH02_RS21370 NONE
SH02_RS21365 NONE
        glgC NONE
        glgA NONE
SH02_RS21350 4282937 .. 4282954 - -10.5  -5.41143   GATGGCGGAAAAAAA             CGGGACC CTTT GGCCCCG              TTCTATTTATTGGTG 100 44
SH02_RS21345 4282421 .. 4282445 -  -8.5  -2.68835   GACAAACACAAAACT          GCCTGATGCGC TAC GCTTATCAGGC          CTACGTGGTTTATGC  63 143
        glpE 4280333 .. 4280350 -  -6.3  -4.01888   AGGGGACAGTATAAA             GCGTTACG CGC CGTA-CGC             CACCTCTGCGGGAAA  67 11
SH02_RS21330 NONE
SH02_RS21325 4278282 .. 4278292 -  -8.2   -3.1855   CGTTTTAACACCGAA                 GCGC GGC GCGC                 CTGGTTGGCTTTTGC  63 419
SH02_RS21315 NONE
SH02_RS21310 4274160 .. 4274182 -  -8.4  -2.76404   CGGACGTAAAAGTGA           CGCCCAGC GCGTGTT GCTGGACG           CATTAAAACTGGCGA  60 514
SH02_RS21300 NONE
        malQ 4266775 .. 4266814 -  -5.7  -2.78018   ATTCGGGATGAATTA  GTAGGCCGGATAAGACGC GTCAA GCATCGCATCCGGCAT-C  AACCGCACTCTACTT  53 35
SH02_RS21275 4262504 .. 4262534 -  -4.6  -3.78775   TGCCTGATGATGAAA       TCATGCAGCACC GACGTAT GGCGCTGCTGGA       GTTAATTCAAAAACA  58 403
        ompR NONE
        envZ 4253327 .. 4253348 - -13.7  -4.65153   TTATAGAAAGCAAAA           CGGGAGGCA CCTT CGCCTCCCG            TTTATTTACCCTTCT 100 31
SH02_RS21225 NONE
SH02_RS21220 4249494 .. 4249528 -  -7.9  -2.79023   CAAGTTCATTAATGA    GTA-TGTCCGGCAGAG AGGG CTCTGCCGGATTTTAC     GACTAATACACCTGA  61 50
        nudE 4244269 .. 4244282 -  -9.5  -4.72272   TGTTCTGATTAAAAA               GGCGC TTCG GCGCC                TTTTCAGTTTGCTGA 100 170
SH02_RS21185 NONE
SH02_RS21180 NONE
SH02_RS21175 NONE
SH02_RS21170 NONE
        hofQ 4237940 .. 4237966 -   -10  -4.05446   TTCGTTAATGATAAA         CCCGCTTCGCTC AGA GAGCGCCGCAGG         ACATGAACTGAAACC  86 362
        aroK NONE
        aroB 4236202 .. 4236220 -   -11  -3.15621   AACCTGAAGCTAATA             GACCGCTT GAT AAGCGGCC             TGACCTTTCTTGTTG  79 41
SH02_RS21150 4234820 .. 4234847 - -14.2  -3.05596   CAGCGCTTCAGGCAA        CTCCCGCAACGA TAAA CCATTGCGGGAG         ATAACCTTGATTACT 100 36
SH02_RS21145 NONE
SH02_RS21140 NONE
SH02_RS21135 NONE
SH02_RS21130 4231308 .. 4231321 -  -9.5  -5.67967   ATGAGGATAAAAAAA               CCGGG TTTC CCCGG                TTTCAGAGTGATGAT 100 176
SH02_RS21125 NONE
SH02_RS21120 4229847 .. 4229864 -  -2.8  -3.90112   GTTCCTTGAATTAAA             TATTCA TTTTTT TGAATA              TTTAGGTTGTGCGAC  52 59
SH02_RS21115 NONE
SH02_RS21110 NONE
SH02_RS21105 NONE
SH02_RS21100 NONE
SH02_RS21095 NONE
SH02_RS21090 4223637 .. 4223673 - -16.6  -3.30124   CCGTAGGCCGGATAA    GATGCGCCAGCATCGC ATCCG GCGATGCTGGCGCGTT    GAATTTTACATCCCG 100 125
SH02_RS21030 4210532 .. 4210553 - -17.3  -3.46602   GCCGGGAGAGCAGAA           GCGCGGGCA AGAT TGCCCGCGC            GAGAAATCATTACGG 100 35
SH02_RS21025 NONE
SH02_RS21020 NONE
SH02_RS21015 4209105 .. 4209115 -  -2.4  -3.03214   ATGGCAATCAGAAAT                 CAGC GAT GCAG                 GAAATTAGCCAGCAG  42 14
        argD 4207746 .. 4207773 -  -8.4  -2.92792   ATGCAGGCTAAACCA        TCGGATAAGGCA TTCA CGCCGCATCCGA         CATCTTTTGCCTGAT  65 50
SH02_RS20990 4204223 .. 4204246 -    -6  -3.79687   ACGCCGGATAAAATA          CTATCCGGCT TCAC AACGGGATAG           TTAAGTCACGCGGCA  63 31
SH02_RS20965 NONE
SH02_RS20960 NONE
SH02_RS20955 NONE
SH02_RS20950 4196709 .. 4196723 - -12.8  -5.42259   TGAGGCGTAAAAAAA               GCGGGG ATT CCCCGC               TTTTTTGTCACTTTT 100 47
SH02_RS20940 4195413 .. 4195434 - -17.3   -5.7946   CCTGTAATAAAAAAA           CCGCCGCCT GGTC AGGCGGCGG            TTCTTAATGCTTATT 100 36
SH02_RS20935 NONE
SH02_RS20930 4194176 .. 4194194 -  -3.8  -3.40403   TTCGTTTCATCAGAA             CTGTACCA CCC TGTCACAG             GTCAGCGAGGCTTCC  49 1
SH02_RS20925 NONE
SH02_RS20920 4193438 .. 4193460 - -12.8   -4.7268   AAACACGTAATAAAA           CGTCCTCACA CAA TATGAGGACG           CCGAATTTTAGGGCG 100 81
SH02_RS20915 NONE
SH02_RS20910 NONE
        fusA 4190187 .. 4190212 - -15.5  -2.78935   ATATTCCTTACTATA         GTGCTCTCCCC TTCA GGAGAGAGCAC          GGGACTTTGGTATTA 100 51
         tuf 4188938 .. 4188953 - -11.8  -4.86939   CAACAAATGCAAAAA              GGGCGC CGAA GCGCCC               TTTTCAATTCAAAAC 100 55
SH02_RS20895 4185931 .. 4185957 - -10.2  -5.20606   AAATATGAATAAAAA         TAATGGGCTACC AAA AGTAGCCCATTG         ACAAAAAATGCGGCG 100 66
SH02_RS20890 4185630 .. 4185643 -  -3.8  -2.79579   AGTCAAAAAACACAC               TCCG TTTATG CGGA                CTCCTTAAACTCCGG  45 17
SH02_RS20885 4185059 .. 4185080 - -13.7  -3.14931   TGGATCTCTTATTAA           CCGGGAGGG TTCT CCCTCCCGA            CACGGCTCAACCTTC 100 32
SH02_RS20820 NONE
SH02_RS20815 4172245 .. 4172259 -  -8.6  -2.52795   AATTCGGCTAACTGA               GGTTCA GAT TGAACC               TGCTGTCAACTACGA  63 112
        rpsJ 4171792 .. 4171806 -  -3.5  -2.72379   TCAATCGCTCAATGA               CCTGA TTAAC CCAGG               CTGATCTGCACGTCT  44 16
SH02_RS20805 NONE
        rplD NONE
        rplW NONE
SH02_RS20790 NONE
SH02_RS20785 NONE
SH02_RS20780 NONE
SH02_RS20775 NONE
SH02_RS20770 NONE
SH02_RS20765 NONE
SH02_RS20760 4167102 .. 4167127 - -14.9    -5.252   TATGGGTAGAAAAAA         TAAACGGCTCA TTTC TGAGCCGTTTA          TTCGTATTGAGAGAG 100 50
SH02_RS20755 NONE
        rplX NONE
SH02_RS20745 NONE
        rpsN NONE
SH02_RS20735 NONE
SH02_RS20730 NONE
SH02_RS20725 4164088 .. 4164098 -  -3.2  -3.32963   ACCTCTACCTTAGAA                 CTGA AGG CCAG                 CTTCACGGGCAGCAT  47 9
SH02_RS20720 NONE
        rpmD NONE
SH02_RS20710 NONE
        secY NONE
SH02_RS20700 4161397 .. 4161426 - -12.3   -4.6645   CACAGACATACAAAA       GATTG-GCTGGCTA ATC TAGCCAGCTCAACC       CAACTTTGCAAGAAA 100 55
SH02_RS20695 NONE
SH02_RS20690 4160540 .. 4160558 -  -4.4  -4.18763   AACAAACCTGGAAAA             CGAGGCGT TAT ACGCGACG             TTTTTTCGGCGGACG  61 14
SH02_RS20685 4159890 .. 4159908 - -10.4  -3.14132   TCTCTTTGGTACTAA             GCTTTACT TGG AGTAAAGC             TCGACGATCAGGTGT  77 10
SH02_RS20680 NONE
        rplQ 4158420 .. 4158433 -  -9.5  -5.61596   ACGGGTATAAAAAAA               CCCGC CGGG GCGGG                TTTTTTTACGTTGCT 100 46
SH02_RS20670 NONE
        zntR NONE
SH02_RS20660 4157252 .. 4157268 -  -5.8  -3.54424   CGTGATTTGCTGAAA              GAGCAG AATAA CCGCTC              TTAACAAGCGCCTGA  59 26
SH02_RS20630 NONE
SH02_RS20625 4150803 .. 4150814 -  -2.2  -3.29511   CTGATTTCGCCATAA                CAAC TTAT GCTG                 AATTAAAGAAATGAT  45 40
SH02_RS20620 NONE
SH02_RS20615 NONE
SH02_RS20610 NONE
SH02_RS20605 4148476 .. 4148489 -  -2.3  -4.77173   GTCCCACAAAATAAA               CGGCT GGAG AGCGG                ATATCTGTATCTCGG  68 140
SH02_RS20595 4146025 .. 4146038 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGTACGCTTCTT  40 34
SH02_RS20590 4145899 .. 4145911 -  -6.3  -3.57309   TAAAACCTCTTCAAA                TTTGC CGT GCAAA                TTTGGTAGGCCTGAG  63 28
SH02_RS20585 4145736 .. 4145769 -  -6.7  -4.49756   TTTTAAAGAGCAAAA     CTTCGCAGTGAACCT TTGC AGGTACACTCTGAAG      TATTTTTTATTTAAT  76 52
SH02_RS20580 4142629 .. 4142642 -  -2.4  -2.78679   GGCCGCCAGGCAAAT               TCTG TTTTAT CAGA                CCGCTTCTGCGTTCT  41 84
SH02_RS20575 NONE
SH02_RS20570 NONE
SH02_RS20565 4142211 .. 4142260 - -23.3  -4.09117   TTCACCGACAAACAA CAGATAAAACAAAAGGCCCAGTC TTCC GACTGAGCCTTTTGTTTTATTTG ATGTCTGGCAGTTCC 100 28
SH02_RS20520 4131312 .. 4131326 -  -5.6  -5.21683   AGTGAAAAAAAGAAA               GACCGG CAA CCTGTC               AAAACGAAGCCGGTT  88 340
SH02_RS20460 4123260 .. 4123270 -  -2.4  -3.75024   GGCCATCATTAATAA                 CCAG ATC CAGG                 GTCGCACGCTGGTGA  51 109
SH02_RS20450 4120214 .. 4120237 -  -3.8  -4.14243   TATTCTACGTGAAAA          CGGATTAAAC GGCA GGTTAAACCG           AGTATCTTTGTGAAT  60 18
SH02_RS20440 4118845 .. 4118872 -  -8.4  -2.66316   TCTCGTATCAGACCA        GGCAGGGTAAAC AGAC ACTTCCCCTGCC         TGCATCCGATTACTC  63 35
SH02_RS20435 NONE
SH02_RS20430 NONE
SH02_RS20425 NONE
SH02_RS20420 4115136 .. 4115156 -  -2.4  -2.63208   TGTGACTCAAAAACC            CTTTGCCG GATGG CGGCCCAG            CATCTGTTTACATCA  40 33
SH02_RS20415 4111159 .. 4111208 - -12.1  -3.30124   TTGTAGGCCTGATAA GACGCACAGCGTCGCATCAGGCAA CGG CTGCCGGATGCGGCG-TGAACGCC CTATCCGACCTACGG  89 113
        tldD 4109316 .. 4109329 -  -2.3  -3.86897   GTTACGTTGTACAAA               CCTGT GCCA ACGGG                TTCCCCTCACCCTAA  51 117
SH02_RS20400 NONE
SH02_RS20395 4107042 .. 4107053 -  -2.2  -2.97029   CGTGATTAACCAAAC                TCAC GCAG GCGA                 TGGGCCATTTTACGG  42 4
SH02_RS20390 4105033 .. 4105051 - -11.7  -5.17353   ATAGCCATGAAAAAA             CCGACGC TTTTG GCGTCGG             TTTTGACTTAACTAT 100 33
SH02_RS20385 4104665 .. 4104685 -  -8.1  -2.78384   TCTTGTCCGACGATA            TTGCCCCCG GTT CGGGGGCTT            TTTTTTGCGCTAATG  61 35
SH02_RS20370 4102121 .. 4102152 - -12.5  -4.07568   GTCGTGCGCTCAAAA      CAAAAAACCGGAG TCTGTG CTCCGGTTTTTTA       TTATCCGCTAATCAA 100 41
SH02_RS20350 4097614 .. 4097624 -  -2.6  -3.59814   CCAGCACACAAAAAG                 TTTT GGG AAAA                 AAACTTTCTTGTAAC  50 109
SH02_RS20345 NONE
SH02_RS20340 4096601 .. 4096614 -  -9.5  -5.64274   TTAGCTATAAAAAAA               CCCGC CGAA GCGGG                TTTTTTCGAAAATTG 100 64
        sspA 4095625 .. 4095635 -  -3.2  -2.60797   TCCATACAGATTAAC                 TCCG GCC CAGA                 CGCATTTCACGTTCT  42 10
SH02_RS20330 4095086 .. 4095116 - -12.7  -4.77157   TTAAGTCATTAAAAA       GACAAAACAGGCC GCCTG GGCCTGTTTTGTA       TTACTTCACAACGCG 100 26
SH02_RS20320 4092448 .. 4092463 -  -2.6  -2.91276   GCTTGTCTGATAAAC              GATATA CCTT TATACC               TGTTATACCAGATCA  43 98
SH02_RS20315 4091474 .. 4091523 - -10.9  -2.89683   ATTGTAGGGTACAGA TGCGTTTATTTCCCCTCACCCG GTAGGGG CGAGCGAGGGGAAAC-AACTCA CCCGCGCTCTTGCAT  77 23
SH02_RS20310 4089895 .. 4089914 - -10.7  -2.78679   TTCCCTTAGCGAAAG            GCCCGGT ACATAG ACCGGGC             AACAGGATTAACTTT  77 33
SH02_RS20305 NONE
SH02_RS20300 NONE
SH02_RS20295 4087655 .. 4087667 -  -3.3  -3.32536   AAAGGAGCCGGAGAA                GCGCA TTA TGCTC                TGGCAGGTTTGCCTA  47 210
SH02_RS20275 4084331 .. 4084370 -  -6.2  -4.08394   ACATCTGCCGTAAAA  TCCACGCCTGACGGCTAC GCAC GTAGCCCGATGGCGAGGA   GACTTTGAAACGAAG  69 195
SH02_RS20210 NONE
SH02_RS20205 NONE
SH02_RS20200 NONE
SH02_RS20195 NONE
SH02_RS20190 4072067 .. 4072091 -  -7.2  -5.05712   ATAAATAAGCAAAAA         GCCTCG-CTGA TAAA TCAGACAAGGC          TCGACTTGCAGGCAG  89 85
SH02_RS20185 NONE
SH02_RS20180 4070338 .. 4070350 -  -4.8  -3.52102   AGTTTATCGACAGAA                CGCA GTTGA TGCG                TAGCTACACTAAACC  53 98
        rplU NONE
        rpmA 4068000 .. 4068021 - -15.9  -4.75174   TATCGAATGTAAAAA           GCCCCGCAA CGTG TTGCGGGGC            TTTCATCCGTTACCG 100 54
SH02_RS20155 NONE
        obgE 4065592 .. 4065618 - -15.9  -4.71382   ACAATTAGTCAAAAA         GAAACCCCGGC ACATG GCCGGGGCTTC         AGATTATTGACAAAG 100 177
        greA 4063364 .. 4063378 - -12.8  -4.36914   TGTTCGTTGATAAAA               GGCCGC ATA GCGGCC               TTTTTCCTTTCTTTA 100 74
        rrmJ 4062154 .. 4062168 -  -2.8  -3.40899   AACCTCTTATTACAA               CTGTGT TAA AAACAG               CGTCAGGATACTCTA  48 80
        hflB 4060134 .. 4060153 - -12.8  -5.56673   ATTGATAAGAAAAAA            CCCCGGAG CACG CCCCGGGG             TTTTCGGTACAAATA 100 61
        folP NONE
        glmM 4057882 .. 4057894 -  -9.1  -5.24129   TTCGCTGAGAAAAAA                GGCGA CAA TCGCC                GCCTTTTTAGCCAGT 100 52
        secG NONE
SH02_RS20105 4057222 .. 4057253 -   -11  -4.32436   AGACCAGGACCAAAA      CGAAAAAAGACGCT TTTC AGCGTCTCTTTTCT       GGAATTTGGTACCGA 100 32
SH02_RS20100 4054998 .. 4055017 -  -2.1  -4.68593   CTGACGATGGAAAAA            GGCGA CTCGGTGTTC TCGCC             AGATGATCGTATTGG  66 184
SH02_RS20090 4053260 .. 4053275 - -10.4  -5.60689   TCAGATAACAAAAAA              CCCCGA TAAA TCGGGG               CTTTATATAACTGAA 100 151
SH02_RS20085 4052750 .. 4052766 -  -6.5  -2.51207   CAGACTATTAAAAGT              GGGGAAC CAG GTTCGCC              TTCTGGATATTACTC  53 1
        nusA NONE
        infB 4048389 .. 4048403 - -11.4  -5.24129   TCTCCTGACAAAAAA               GGGGCT GTT AGCCCC               TTTTTAAAATTAATT 100 152
        rbfA NONE
        truB 4046958 .. 4046972 -  -2.8  -3.95071   CAAAGTGTTAAACAA               TTTACG CGA CGTTAA               GCGGCAGTATTCTAC  54 74
SH02_RS20060 4046565 .. 4046581 - -10.8  -5.03314   GTCAGCTTGAAAAAA              GGGGCC ACTCA GGCCCC              CTTTTCTGAAACTCG 100 47
SH02_RS20055 4044188 .. 4044209 - -15.1  -4.07568   CCTGCCCGGTTAAAA           GCCCCCCGC CGCA GCGGAGGGC            AAATGGCAACCTTAC 100 37
SH02_RS20050 4043168 .. 4043193 -  -7.5  -4.04023   ATTAACGAACAACAA         CGCCCTCACCC GTTA AGGTGATGGCA          ATCAAAAAAGATTAC  72 60
SH02_RS20045 4041093 .. 4041115 - -10.6  -5.82281   AAAGACAGAAAAAAA           GCCCCGAT GGTAAAA ATCGGGGC           TGTATATATTATTTT 100 69
SH02_RS20035 4039697 .. 4039719 -  -8.4  -2.98823   GCTGTCCTACATAGA           CCTGATAAGC GAA GCGCATCAGG           CATTGTGTAGGCAGC  65 67
SH02_RS20015 NONE
SH02_RS20010 4035289 .. 4035313 -  -2.1  -3.60151   CGCGGGAAAGGAGAA         CTAACGCTGG TGTTTT CC-GCGCCAG          TGGGCGATCGTTCGC  49 155
SH02_RS20000 4034606 .. 4034622 - -10.1  -2.70946   GTGGTTGATAAAGAT              CAGCTGG TTA CCAGCCG              GACACCGGACGATCT  67 63
SH02_RS19990 4033331 .. 4033341 -  -5.4  -2.65264   TGACCAGTCATAGCA                 TTCC CCA GGAA                 TAAGTTATGATAATT  49 83
SH02_RS19985 4032250 .. 4032261 -  -7.2  -3.50393   CCGTAGGTCAGATAA                GGCG TTTA CGCC                 GCATCCGACATGTTT  66 50
SH02_RS19960 4027623 .. 4027655 - -11.5  -4.07885   CATCGTGCGGTAAAA     GAAGACGTTGCGTT TTGATT AACGCAACG-CTTC      GGCACTGTTACCCCT 100 33
SH02_RS19885 4012931 .. 4012942 -  -5.8   -4.7416   GCAAAATGTTAAAAA                GAGG ACAT CCTC                 CTGCCGACTGGGAAA  81 127
SH02_RS19865 NONE
SH02_RS19860 NONE
        garR 4006981 .. 4006992 -  -7.2  -2.66316   CCTGTTACCACATGA                CGCC GGAG GGCG                 TTTCTCTTATTCGGC  58 88
SH02_RS19850 4005369 .. 4005396 -   -15  -4.07568   TCTGCCCCTCCAAAA        GCAAAAACCCGC CGAA GCGGGTTTTTAC         GTAAATCAGGTGAAA 100 442
SH02_RS19830 4001245 .. 4001265 -  -2.5  -3.54146   CGCCTGAATTAAATA            TGTAGGTAA CCG TAACCGACA            CCTGCAAGACAGACA  48 75
SH02_RS19825 NONE
SH02_RS19820 NONE
SH02_RS19815 NONE
SH02_RS19810 3996942 .. 3996953 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH02_RS22935 NONE
SH02_RS19800 NONE
SH02_RS19795 3993669 .. 3993703 - -11.5  -3.05384   TTGCCGTTCAGTGAA    GTGGAGCGGAACGACC TTAC GACCGTCCCGCTC-AC     GAGGCTTTACGCACT  83 32
SH02_RS19790 3992232 .. 3992249 - -11.3  -6.00086   AGATCACAAAAAAAA             GGTGCAC ATTT GTGCACC              CAAGGATGAAAGCTG 100 50
SH02_RS19785 3990649 .. 3990663 -  -2.8  -4.90217   CAAACATATTAAAAA               CCTTAA AAT TTCAGG               TAAATCAAGAAAATG  67 30
SH02_RS19780 3989055 .. 3989083 -  -2.3  -4.61527   AAAATTGGCCAAAAA       GCGCCAGC-CGG TGAAGC CCGTGGTGGCGA        AAGAACCTGCTCGCA  66 272
SH02_RS19765 3987266 .. 3987285 -  -9.2  -2.62425   AATTAATCTTAGAAT            TGGGGCGA TATT TCGCCCCT             TTTTATTAACAATAA  68 47
SH02_RS19700 NONE
SH02_RS19695 3975765 .. 3975789 - -12.9  -4.21922   GTATGGAAAAGCAAA          CGGCGCTTCAC ATT ATGAAACGCCG          TTTTTTATTAACAAC 100 52
SH02_RS19690 3975161 .. 3975171 -  -2.4  -3.34517   ATCGTCTGGCAAATA                 GCGC CCT GCGT                 AATTAATTGTTTAAC  45 36
SH02_RS19660 3968682 .. 3968713 - -12.2  -2.52795   AACGTGCTGAACGTA      GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA       GGTAACTCCCAATCT  81 40
SH02_RS19655 NONE
SH02_RS19650 NONE
SH02_RS19645 3967543 .. 3967558 -  -4.6  -3.76641   AGGGCAAGAGCCAAA              CCGCGC GCTG GCGCAA               CCGCTGATTGATAGC  58 184
SH02_RS19605 3954870 .. 3954898 - -14.7   -3.9344   AAGCGTAATATCAAA        TCGGATGGCGA TACGACG TCGCCATCCGA        TCTTTTTATACGACG 100 31
SH02_RS19595 3951340 .. 3951355 -  -3.3  -5.72622   TGCACAAATAAAAAA              GATCA TTGCGG TGATC               GACCGCGCCGCTTTT 100 215
SH02_RS19585 3949674 .. 3949695 - -14.5  -3.91597   ACCAGATATAGCAAA           GGCTGACGA GAAA TCGTCAGCC            TTTTTCTTTTTATAT 100 46
SH02_RS19575 3948933 .. 3948951 - -11.7  -3.85698   GGCCCTCTGCACAAA             CGCCACC TTTTC GGTGGCG             TTTTTTATCGCCCAC  95 30
SH02_RS19555 3943332 .. 3943342 -  -2.4  -2.85668   CATTCTTACACCATA                 CGCC ACC GGCC                 CCAGTCCGATTTACT  41 202
SH02_RS19535 3939003 .. 3939015 -  -3.3  -3.22909   TTAAAGGAGGAAAAG                GCGTT GCT ACCGC                TTTTGGTGCCATCGC  45 324
        folB NONE
SH02_RS19520 3937195 .. 3937208 -  -8.1  -3.30124   TTGTAGGCCTGATAA               GACGC GCAA GCGTC                GCATCAGGCGTTGAT  66 117
SH02_RS19505 NONE
SH02_RS19500 NONE
SH02_RS19495 NONE
SH02_RS19490 3929092 .. 3929111 - -11.4  -3.71649   GGCTGAAACGGGAAA            GCCCCTCC CGAA GAAGGGGC             CTTGTATAAGGAAAG  88 224
SH02_RS19465 3925708 .. 3925723 - -11.8   -4.5394   ATACAAACACTAAAA              CGGGCC ATCA GGCCCG               TTATATCAGTGCTCT 100 31
        ribB 3917746 .. 3917767 -  -5.9  -5.63236   AGGGAAAAATAAAAA           CCGAAGCCTG CTA CAA-CTTCGG           TTTCTTGATTAAGGC  95 61
SH02_RS19420 3917320 .. 3917356 -   -11  -4.40963   ATTGGTTAAAAACAA    CATCAGAAGTTGTCCA GCGCA TGGACAACTTCTGCCA    GCTTCACGAAAGCCT 100 40
SH02_RS19410 3915581 .. 3915602 - -15.9  -2.84619   GAATAAGCCACGATA           CCGGATGGC ACTC GCCATCCGG            TAATTGTTAGCCTAT 100 32
        nudF NONE
SH02_RS19380 NONE
SH02_RS19375 3909996 .. 3910010 -  -2.8  -2.93769   AAAGAAGCGTAGACA               TCAGTA GCC TTCTGA               AGCGGTATCAGGTTG  43 11
SH02_RS19370 3909422 .. 3909433 -  -4.4  -2.88544   GTTGATCGTCAGAGA                TGGT GCAG ACCA                 AGAAAATCGACGATC  46 7
SH02_RS19365 3906984 .. 3906995 -  -2.2  -4.13995   GTTCCATAAAGCAAA                CCAA TTCC TCGG                 TATGGAACCGCTGCC  56 524
SH02_RS19350 3905705 .. 3905720 -  -6.8  -3.87815   GCCCACCCGGACAAA              CCGCTA CCGG CAGCGG               GCTTGGGCTATCGAT  68 174
SH02_RS19335 3903242 .. 3903264 -  -9.1  -2.90496   CTCCCTGCGAAATTA           TTCCCGGGA ACGCG TCCCGGGAG           CGGTAACAATTACGG  68 35
SH02_RS19330 3902679 .. 3902699 -  -3.9  -4.41114   TGACCATATAAGAAA            GTGGCGC ATTAGTA GCGCCAG            TTTGAAGCAGGAATT  65 65
SH02_RS19325 NONE
SH02_RS19320 3901815 .. 3901829 -  -4.9  -5.63517   CCGGTAAAGAAAAAA               GCGAG TTGCC CCCGC               TTTTCCATTAATTAA  91 37
SH02_RS19315 3900066 .. 3900092 - -11.5  -3.10732   AGATCAACGTGAATA         GCGCCGCCGGA CGTGC TCCGACGGCGA         TAAAGGCATCAATGT  84 34
SH02_RS19310 3897476 .. 3897494 -  -5.2   -3.3251   ATATATAGCATAACA             CCCTCTGA AGG TCTGAGAG             ACTGGCATTGTACGT  55 236
SH02_RS19305 3896692 .. 3896718 -  -2.2  -3.33151   CTGGCTAAAGTAATA         CCGTGCAGGAAA GTG TTCCCCGCAAAA         ATACAGATTGCCGAC  45 41
SH02_RS19300 3895213 .. 3895245 - -12.8   -2.6993   AGAAATCGAAAGGTA      TTCCATACTCGCCC TCCTC GGGCGAGTATGAAG      ATTACGGTACCGGAT  91 27
SH02_RS19295 3892883 .. 3892910 -  -6.9  -5.73339   AGAATGATAAAAAAA        TCCCCGGTAGC GTGTCA GTTGCCGGGGA         TATTTTTTAACGTCC 100 32
SH02_RS19270 NONE
SH02_RS19265 3888110 .. 3888129 -  -2.1  -3.16288   TAAACGCCATGAAGA            TCAGGTA ATGACG TTCCTGA             TGATCCTGCCAATTG  43 148
SH02_RS19250 NONE
SH02_RS19245 NONE
SH02_RS19240 3884542 .. 3884568 - -13.8  -5.44119   TTTAGGTTAAAAAAA         TGCCCGGTTG TGAAAAG CAACCGGGCA         TCATTGTGAATTCAC 100 265
SH02_RS19230 3882939 .. 3882959 - -15.4  -3.62775   ATGACCTGTTAATAA            CGGGCGCG CGAAC CGCGCCCG            AATCAGATCAGTGAT 100 33
SH02_RS19220 3880836 .. 3880847 -    -3  -3.04322   CGTAATCCCGTAAGA                GATA AACC TATC                 AGGAGAGATATTTAT  44 24
SH02_RS19215 3880444 .. 3880458 -  -2.8  -3.14931   CGTATGTTTGATCAA               TTTTCG AGG CGATAA               CCGGCCATAAAAAAG  44 7
SH02_RS19210 NONE
SH02_RS19205 NONE
SH02_RS19200 NONE
SH02_RS19195 NONE
SH02_RS19190 NONE
        hybD NONE
SH02_RS19180 NONE
        hypA NONE
SH02_RS19170 3873658 .. 3873689 -   -13  -2.58579   GCAATCGTGCACAAT      GCCTGATGCGACGC TGCC GCGTCTTATCAGGC       CTACGAAAGCTAATC  91 42
SH02_RS19160 3870602 .. 3870638 - -16.8  -3.16668   GAATATTTTGATTAA    TCCCCGTACTGATTAT TCTTC ATAATCAGTACGGGGT    TGCTACAACATGTAT 100 40
SH02_RS19155 3868821 .. 3868855 - -13.7  -4.68994   ATCACTAGTCAAAAA     TGGAAATGCCCGATC GCCAG GACCGGGCATTTTCA     GGAAGGTTAAATCAA 100 32
SH02_RS19145 NONE
SH02_RS19140 NONE
SH02_RS19135 3865285 .. 3865295 -  -5.4  -4.22748   CATGAAGAAATGAAA                 TGAC TGA GTCA                 GCCGAGAAGAATTTC  65 61
SH02_RS19125 3862882 .. 3862910 -  -2.9  -3.35679   TGCGCGGATCTACAA        CGCGGTGTTGCAG CGG CTGCCGCACGTCG        CCCAGCGCGCAGCAC  47 148
SH02_RS19115 NONE
        glcE NONE
        glcF NONE
SH02_RS19100 NONE
SH02_RS19095 3855585 .. 3855610 - -12.6  -2.83164   GCAGTTACTATCATA         GCCCCGACAA TAAAAC TTGCCGGGGC          TTTTTTGACGCTATT  89 39
SH02_RS19090 3853551 .. 3853577 - -12.4  -3.58779   AATAATGTAAATGAA         GCCGGATGAT ATTAACG ATCATCCGGC         TTTATTGATTTACGA 100 35
SH02_RS19080 3848459 .. 3848492 - -13.1   -2.8294   TAGGCCCGATAAGCA     GGCGCATCGGGCAAA TGTG TTAACCCGGTGCGCC      TTATTTCATGCCGGA  91 73
SH02_RS19075 3847506 .. 3847522 -    -3  -3.18144   AATAAGAGTTAAAAT              GTCACT TTGAT AATGAC              GTGGTTATCATTAAA  46 36
SH02_RS19070 NONE
SH02_RS19065 NONE
SH02_RS19060 NONE
SH02_RS19055 3844446 .. 3844462 - -11.5  -3.65581   ACTAATTCTTAAGAA              CCCGCCC ACA AGGCGGG              TTTTTGCTTTTGGAT  90 143
SH02_RS19040 3840976 .. 3840997 - -11.5  -5.30616   TTACGCAAAGAAAAA           CGGGTCGCC AGAA GGTGACCCG            TTTTTTTTATTCTTA 100 38
        trmB NONE
SH02_RS19010 NONE
SH02_RS19005 3835634 .. 3835657 -  -8.8   -5.4505   TCCCTCAAGAAAAAA          TCAGGCCAGC ATTT GCTGGCCCCA           GATTGATAACAAAGT 100 2
SH02_RS19000 3834856 .. 3834878 -  -9.2  -4.12315   AAACGAAGAATTAAA           CGGCATAAAA AAG TATTATGCCG           TCTTAAAATAGAGGA  85 41
        ansB 3833644 .. 3833664 - -14.7  -4.74103   GTCTGAAGTGAAAAA            GCCCCGGCA CGA TACCGGGGC            GAGGCGATTAGTACT 100 33
SH02_RS18990 3832107 .. 3832119 -  -6.2  -4.30576   TGCGTACCACCAAAA                CGCG TCATC CGCG                TGGTTTTATGCAAGG  72 454
SH02_RS18960 3827844 .. 3827861 -  -7.7  -4.15044   CGGGCGCTCAACAAA             GGCAAAG TTGA CTCTGCC              TCTGCGGTTATTATT  76 254
SH02_RS18915 3820101 .. 3820118 -  -8.5  -4.52703   GAAACCACGAGAAAA             CTCTTGT TTTT ACAAGAG              CGCCCTTGTTCAGTC  87 296
SH02_RS18905 NONE
SH02_RS18900 3817823 .. 3817855 - -14.9  -5.71712   GTCGATATAAAAAAA      CCCTTCCGCGTCG TTAGGCC CGACGAGGAAGGG      TTGGATTTGTCACAA 100 95
SH02_RS18895 3816796 .. 3816827 - -10.8  -2.52464   CGGGTGCCGAACGTA      GGTCGGATAAGGCG TTCA CGCCGCATCCGACA       TTAATGGCACGTTTT  76 65
SH02_RS18885 3813599 .. 3813614 - -10.4   -5.5074   CAAGGTAATAAAAAA              GGTCGC CGAA GCGACC               TTTTTACCCGAAATG 100 45
        cmtB 3812877 .. 3812893 -  -3.7  -3.34534   TAGAGGAGAGAGTAA              TTATCCG CGG CTGATAA              TGTCCGCTAATTGTT  49 9
SH02_RS18875 NONE
SH02_RS18870 3810153 .. 3810181 -    -8  -2.97489   GTAACGCGAAATAAT        GGCCACGCCAGG GACAT CATTGCGCGGCC        TCCCCGATATCAACG  62 13
SH02_RS18865 NONE
SH02_RS18860 NONE
SH02_RS18855 3807751 .. 3807780 -  -3.5  -3.53343   AATCGTCCGGGGAAA       CCTTACCTGTCGCA AAC TGCGACTGATT-GG       TTAATTGTCGAACAT  51 211
        gapA NONE
SH02_RS18845 3805422 .. 3805439 - -12.7  -3.90922   AGCGCGCTGAAACAA             GGGCAGG TTTC CCTGCCC              TGTGATTTTTTACTT 100 35
SH02_RS18840 3804114 .. 3804130 - -11.5  -5.40072   TTTTGGCGAAAAAAA              GACCCGC AGA GCGGGCC              TTGAGATAAGCAGAA 100 50
SH02_RS18835 3802903 .. 3802928 - -11.9  -3.33839   AAAACTAATAAGAGA         GAGGCCAGAGA GTAT TATCTGGCCTC          AGCGTTGATTACGCA  89 34
SH02_RS18830 NONE
SH02_RS18825 3801299 .. 3801324 - -13.3  -2.64472   TATCGGGTAAAGGCA         TTAGCCCGACG AATA CGTCGGGCTAC          AAATATTATTGTGCT  93 31
SH02_RS18820 3800183 .. 3800195 -  -3.3  -4.11216   TCGCTATCTGGAAAA                TGCGC CTG GCGGA                CATATTCACCACGAT  58 97
SH02_RS18790 NONE
SH02_RS18785 3792467 .. 3792485 -  -3.2  -5.27399   CAACATATCAAAAAA             TAATATTG CGG CAATATGA             ACGTTTGCGTCGCGA  79 196
SH02_RS18780 3791124 .. 3791146 - -15.6  -5.66684   GAAGGGATAAAAAAA           CGGGCAAGTC AGT GACCTGCCCG           TTGATTTTCAGAGAA 100 47
SH02_RS18765 NONE
SH02_RS18760 NONE
SH02_RS18755 3786325 .. 3786337 -  -3.3  -3.05597   TTTATTCCTTAAAAC                CGCCT TCA ACGCG                CCACCCAACCGAGGG  44 18
SH02_RS18750 3785038 .. 3785061 - -10.3  -4.39386   TTCAAATGAGGAAAA          TCTCCCGGC GAAAAA ACCGGGAGA           TGAAAGTGTGATGGG 100 69
        gcvT 3783566 .. 3783586 -  -8.9  -3.16667   CAAAAAAGTAAATCA            CGCGACGGC TTT GCCGTTACG            CACAAAAACAGGTTT  69 2
SH02_RS18740 3783084 .. 3783125 -    -8  -3.14132   CTCTCTCCTTACGAA GAGAGTGAGGGTGAGGCA TAAATT TTCCTCACCCTGATCCTC  TCCCGCAGAAGAGGA  63 50
SH02_RS18735 3780119 .. 3780132 -  -9.5   -4.7373   TCATCTGACTAAAAA               GGCGC CGAA GCGCC                TTTAGAAAATAGTCG 100 51
SH02_RS18730 3779104 .. 3779129 - -13.4  -2.79023   TAAGTCGATGAAGTA         CCGGATGCAA TACTTG TTGCATCCGG          TCAGACAACTTCCCT  93 44
SH02_RS18720 3777197 .. 3777208 -  -4.4    -3.281   GCGTAACTGAGAATA                GTTC CAGT GAAC                 ACCTGTTAGCTAAAA  51 119
SH02_RS18715 3776395 .. 3776406 -  -7.2  -3.34962   CCGTAGATCGGATAA                GGCG TTCA CGCC                 GAATCCGGCAGTTGT  64 98
SH02_RS18705 NONE
SH02_RS18700 3774027 .. 3774039 -  -4.8  -2.72144   GGATTTTGGTGAAAT                CCAG GAAGA CTGG                GAAGCCGTCTGGGAT  46 392
        xerD 3772837 .. 3772852 -    -4  -2.87132   CGTTCTTTTCAGACA              TCACGCC CGC GG-GTGA              TGCTGTTGATGAAGT  46 10
SH02_RS18685 NONE
SH02_RS18680 3770315 .. 3770341 - -11.7  -3.30903   AAAATGCGGTGATAA        GAGCG-GGATTG TACC CAATCCACGCTC         TTTTTTATAGAGAAG  86 47
SH02_RS18675 NONE
        lysS 3767609 .. 3767626 - -10.5  -5.95539   GCTTAAATAAAAAAA             CCCCGAC ATTT GCCGGGG              TTGTGAGCATAACGT 100 46
SH02_RS18645 NONE
SH02_RS18640 3762483 .. 3762508 - -11.1   -3.1352   GGGCAATCTAATAGA         TTCTCCGCGCC TTTC AGCGCGGAGAT          TTCTTTCAGAGAGGA  79 31
SH02_RS18595 3748259 .. 3748273 -  -9.2  -3.14683   ATATCCTTTCAGTAA               CCCGGA ATA CCCGGG               CCGCTAATTCACAAA  72 29
SH02_RS18590 3746390 .. 3746415 - -11.8  -3.78329   TGTCAGTAATTTAAA         GGCCGGGTGG GTAATA CCATCCGGCC          AAAGATTGTCAAGTA 100 214
SH02_RS18560 3737961 .. 3737992 - -10.8   -4.5528   GAAAACGAAGTAAAA      GGATATCCGGCCTG AATT CAGGCCGGATTCAC       TGAGGTTATGTGTTT 100 31
SH02_RS18540 NONE
SH02_RS18535 NONE
SH02_RS18530 NONE
SH02_RS18525 3731630 .. 3731649 -    -8   -2.5076   AACTAGTATTAAGAC            TATCACTT ATTT AAGTGATA             TTGGTTGTCTGGAGA  60 55
SH02_RS18520 NONE
SH02_RS18515 3730300 .. 3730310 -  -3.2  -4.36914   CCTTTCTCGATAAAA                 GTGA CAA CCAC                 TGAGTAAACAGATCA  61 77
SH02_RS18510 NONE
SH02_RS18505 NONE
SH02_RS18500 3729222 .. 3729232 -  -3.2  -5.40072   TTTTGCGTAAAAAAA                 TACC ACA GGCA                 TTAAAAAATCATGAG  79 97
SH02_RS18495 NONE
SH02_RS18490 3727944 .. 3727957 -  -3.9  -4.25283   ATGCGCTCACCAAAA               GTTAA ATTC TTAAC                CATCTTCACGTTTTG  63 518
SH02_RS18460 3723760 .. 3723770 -  -5.4  -3.82205   GTAACAGAGCAATAA                 TGCA TTG TGCA                 AGGTAAACTAAAATA  61 180
SH02_RS18435 3718227 .. 3718241 -  -3.6   -4.8622   GTTTTCAATTAAAAA               TAAAAC AAT GTTTCA               TTTTTAAGTTAAGGA  70 185
SH02_RS18430 NONE
SH02_RS18425 3716447 .. 3716464 - -12.7  -5.29782   TACAGGTATAAAAAA             CCCTGCC ATGC GGCAGGG              TCATAAAAGTAAGAA 100 48
SH02_RS18420 3714721 .. 3714747 - -18.8  -5.30155   CTATTAACGAAAAAA         GGGCCGGATGTA CAG CACATCCGGCCC         GTGAAATCAGACGCC 100 32
SH02_RS18415 3713682 .. 3713710 -  -3.7  -2.93869   CATGATCGTAGAAAC        CCACAGCGCCG CGTCAGT CTGCGCAATGG        TACGGGCGGGGGTAG  45 248
SH02_RS18405 3711613 .. 3711624 -  -3.6  -2.76263   GTCATCATGCAACCA                GCGA CTAA CCGC                 AGTTAAAGCAATTCC  45 28
SH02_RS18395 NONE
SH02_RS18390 3706630 .. 3706655 - -16.3  -3.27475   TCCGGCACCATAAGA         TTAACGCCGGT TAAA ACCGGCGTTAA          ATATTAATGACGGCG 100 29
SH02_RS18355 NONE
SH02_RS18350 3700078 .. 3700088 -  -6.8  -3.68506   GAACAGCGATTGAAA                 TGCG CGC CGCA                 GGTTTCAGGCGCTCC  65 115
SH02_RS18345 NONE
SH02_RS18340 3698310 .. 3698329 - -10.7  -5.44119   CGGAGGGTAAAAAAA            CCGACGC ACACTG GCGTCGG             CTCTGGCAGGATGTT 100 47
SH02_RS18335 NONE
SH02_RS18330 NONE
SH02_RS18325 NONE
SH02_RS18320 NONE
        recC 3692985 .. 3693003 -  -7.4  -2.69471   CTATGTTTATATAAC             CATCAGTC CGT GACTGGTG             CGCATCATAAAGTAA  58 72
SH02_RS18310 NONE
        recB NONE
        recD 3684574 .. 3684618 - -12.9  -4.30978   GGTAAGCGATGAAAA TCGTCGGATGCGACATGCG TAACACT CGTACGTCGCATCCGGCAA TTACGTTTATTCCCG 100 32
        amiC 3681726 .. 3681739 -  -5.9  -5.24129   GTCTCCCATAAAAAA               GCGCC ATTC AGCGC                CTTTTTATCATCCCC  85 33
        mltA 3679852 .. 3679872 - -10.4  -4.93365   CCTCAGAATTAAAAA            GGGCGAGG TTATC CCTCACCC            TAAACGCATAAATGC 100 224
SH02_RS18265 3678984 .. 3679021 - -17.1  -3.59946   GGTTTAAGCACAGAA   CCGGGTCGGATAAGACG TTCG CGTCTCATCCGACCTGA    TTGTTTAACCCTGAC 100 30
SH02_RS18250 3676864 .. 3676883 - -10.7  -2.57423   ATAGTGATTAATGTA            GCACCGC CTAATT GCGGTGC             TTTTTTTTACCTTGC  76 50
SH02_RS18245 NONE
SH02_RS18240 NONE
SH02_RS18235 3674037 .. 3674058 -  -2.9  -3.09635   ATCTGGATGAGGTAA           CGCACATTA TTTC TGATGAGCG            CCAGGTTGCAACTTC  43 100
SH02_RS18205 NONE
SH02_RS18200 3665610 .. 3665621 -  -2.2  -4.74801   GAATCGGACCAAAAA                GC-GC CAC GCAGC                TGCTGGTCGAGTTTC  68 259
SH02_RS18170 3658579 .. 3658590 -    -3  -4.41047   ATGCCTTAAGGAAAA                TTTC ATAT GAAA                 GTTAAGAATTAACAA  61 160
SH02_RS18165 3658156 .. 3658181 - -15.5  -5.84381   GCAGGAATAAAAAAA         GGGAGCACTGT ATTC ACAGCGCTCCC          GGTTCGTTTCGCAGC 100 194
SH02_RS18160 NONE
SH02_RS18155 NONE
SH02_RS18150 3656243 .. 3656261 -  -4.4  -4.93898   ATAGCAGTATAAAAA             GCGCGCCA TAG CGGCTCAC             CGTGCAACAACACAA  74 289
SH02_RS18145 NONE
SH02_RS18140 NONE
        gudD 3652000 .. 3652019 - -11.4  -3.58522   AGCATCAGTCTCAAA            CCGGCTCC AGAT AGAGCCGG             TTTTGGTTTTCTGTC  90 41
        rumA 3647665 .. 3647682 -  -5.5  -2.80816   CCTTTAGGGACCAGA             CCTGCCG AAAT CGGCAAA              TCGCAACTATTTAAC  50 32
        relA 3645377 .. 3645389 -  -6.3  -3.34534   TACAGTATATATCAA                TCTAC ATT GTAGA                TACGAGCAAATTTCG  59 43
SH02_RS18115 NONE
SH02_RS18110 3644714 .. 3644725 -  -2.2  -3.57144   TCTGTCAGGTGGAAA                CCTG TGAC CAGA                 ATAGAAGTGAGTTAG  47 46
        mazG 3643796 .. 3643811 -    -4  -4.43844   TCAGGAGTGAGAAAA              TAGCCCC TTT GGGG-TA              AATGTTTTTGACGCA  66 98
        pyrG 3641976 .. 3642000 - -18.7  -4.07562   GAAACTCCAGACAAA          CAACGCGTACC CAG GGTACGCGTTG          CCGCTCTAACTTTTT 100 44
         eno 3640589 .. 3640608 - -13.6  -5.37345   CTCAACCATAAAAAA            TGCCAGCC CGGA GGCTGGCA             TTTTTAAATCAGATA 100 50
SH02_RS18080 3638678 .. 3638718 -    -5  -4.08279   AGAGGCGACAAACAA TATAAATGAGTAGAAGTCT TTAC AGG-TTCCACCCATTTATA  ACGCTTATAAATGTT  63 44
SH02_RS18065 3633465 .. 3633476 -  -2.2  -4.55004   AAGAGAAAACAGAAA                CCAC CGTT ATGG                 GTTAGCGCACTAAAT  60 27
SH02_RS18060 3631917 .. 3631946 - -11.4  -4.21936   CTGAGAAGCCGAAAA       GGCAACGCCCCG TCATCG CGGAACGCTGCC        TGACACATTATTTTT 100 33
SH02_RS18055 3630536 .. 3630547 -    -3  -3.12668   CTTTAAACGCTAACA                GAAT GTTC ATTC                 GCACCTCCTACATTT  46 1
SH02_RS18050 NONE
SH02_RS18045 3628631 .. 3628653 -    -4  -4.60797   GGGTGACAGAGAAAA           TCCGCCAACC GCT GATTGCCGGT           GGGCTGGTGTGCGAT  70 281
        cysJ NONE
SH02_RS18015 NONE
SH02_RS18010 3621522 .. 3621547 -  -9.7  -5.45802   CTCGCAAAATAAAAA         CGCCCCCATCA TTTC TGACAGAGGCG          TTTAATTTGTCCGGC 100 46
SH02_RS18005 3618454 .. 3618476 -    -7  -4.55128   ACCGGGAAATTAAAA           GAAGATGTAC ATT GTGCACCTTC           CCTACTTAAGTAGGG  76 92
SH02_RS18000 NONE
SH02_RS17995 3616134 .. 3616148 -  -4.2  -3.04598   ATAAAGTTAGACATA               GAAAGG TTT CCTTAC               GCATTTTTGTTTGTG  47 22
SH02_RS17990 NONE
SH02_RS17985 NONE
SH02_RS17980 NONE
SH02_RS17975 NONE
SH02_RS17970 3612424 .. 3612438 -  -4.2  -3.53012   CGCGCGTCTGCGAAA               GCGG TTTATCC CCGC               TGGCGCGGGGAACTC  52 146
SH02_RS17960 NONE
        cysN NONE
SH02_RS17950 3607352 .. 3607369 -  -6.2  -3.15544   TGTTACTTTGACGAA             CCGGGC ATGGAA ACCCGG              TGGTGTCTCAGGATC  57 33
SH02_RS17945 3606891 .. 3606917 -  -4.4  -2.59191   GGATACCGCGACAAC         GCGGGCAAATGT ACC ACATTTGTCCAT         TGTTACGTATACCCA  45 112
        ftsB NONE
SH02_RS17935 NONE
        ispF NONE
        truD NONE
        surE NONE
         pcm 3602761 .. 3602775 -  -2.8   -4.7254   ATCCCCCAGGAAAAA               TTGGTT AAT AACCAG               TGACATAATTACCGT  64 133
        nlpD 3601544 .. 3601556 -  -3.3  -3.35996   TATTCTGACTCATAA                GGTGG CTC CTACC                CGTGATCCCTTGACG  47 73
SH02_RS17905 3600507 .. 3600530 - -14.6  -4.52857   ATTGTGCACAGAAAA          GGCCAGCCTC GCTT GAGACTGGCC           TTTCTGACAGATGCT 100 44
SH02_RS17875 3594155 .. 3594168 -  -3.1  -4.76193   AACGACAACATAAAA               TATGC CATC GCACA                TGCAGATTATCCGGG  71 314
SH02_RS17860 3590415 .. 3590440 - -15.5  -2.79968   GATTTAACTGCAAAT         TGCCGGACAGA TCTG CCTGTCCGGCA          TACTATTCATGAGGT 100 28
SH02_RS17825 3583928 .. 3583942 - -11.4  -3.57263   ACGCCCATCCCCAAA               CAGGCG TAA CGCCTG               CAAAACGGGCAAAGC  89 47
SH02_RS17815 NONE
SH02_RS17810 NONE
        hycD 3580482 .. 3580500 -  -3.7  -2.71263   AACTCTCTTTAATCA             CGCCGCC AGCAA GGAGACG             AACGCTAAAAATGCA  44 4
        hycE NONE
SH02_RS17795 NONE
SH02_RS17790 NONE
SH02_RS17785 NONE
        hycI 3576467 .. 3576491 - -12.1  -2.57136   GCACGAACCATGAAG          GCCCGATAAGC GCA GCGCATCGGGC          AATTTAGCATTTGGC  83 97
SH02_RS17765 3572201 .. 3572231 -  -7.7  -4.77157   GTAATGCAGGAAAAA      CGATGTCATCGACA CTAG TGACGATGACAT-G       TGATGACAATGTTTA  91 38
SH02_RS17760 3571439 .. 3571497 -  -6.7  -3.21099   TCCCGCCATCATGAA TTGCGTAACCCGC-CCTGCCGGACACGAC AGC GTCGCATCCGGCAGTCACAGGTCG-GCGA TACCGCCCGCTCCGT  59 96
SH02_RS17755 3569057 .. 3569088 -   -13  -3.04715   TACTGTGCCTAAAAT      GTCGGATGCGACGC TGGC GCGTCTTATCCGAC       CTACGGGGACGCATG  95 100
SH02_RS17740 3564397 .. 3564414 -  -5.5  -4.15044   CGCTTGCTGAATAAA             GTGCATC ATCT GATGCGC              CGTGACGATGCCATC  67 376
SH02_RS17700 3558437 .. 3558481 -    -5  -5.28778   AGGATTCAGAAAAAA GCTGATTAGCCAGAGGGAAGC TCAC GCCCCCCTCTTGTAAAT-AGC TACTGTACTCGCGCC  82 25
SH02_RS17695 3557819 .. 3557838 -    -8  -2.84098   CTGTTGAAGCAATTA            TACTGTAT GCTC ATACAGTA             TCAAGTGTTTTGTAG  61 26
SH02_RS17685 3556710 .. 3556724 -  -2.8  -2.56715   ATCGCCATTAATTCA               CTGATC AGT GATAAG               CTGTCAAACATGAGA  41 115
SH02_RS17680 3556315 .. 3556344 -  -8.5   -5.1925   TTACAACTTAAAAAA       GCAAAAGGGCCGC AGAT GCGACCCTTGTGT        ATCAAACAAGACGAT 100 193
        recX 3555692 .. 3555736 -  -7.3  -3.56675   CAAGCTAACGAAATA TC-GCCACCAGCTCCAGCGTGT CTTA AC-CGCCGG-GCTGGTAACTGA AAAGTGGGAATAAGA  66 79
SH02_RS17665 NONE
SH02_RS17660 NONE
SH02_RS17655 NONE
SH02_RS17650 3551988 .. 3551998 -  -5.4  -3.27029   CCGTATCAAGTAAGA                 GATG GTG CATC                 CGGGAGGATTACTCG  55 151
SH02_RS17645 3551847 .. 3551857 -  -5.4  -3.28487   CCATATCAAGTAAGA                 GATG GTG CATC                 CGGGAGGATTCGAAC  55 17
SH02_RS17640 3551573 .. 3551583 -  -5.4  -3.28487   CCATATCAATTAAGA                 GATG GTG CATC                 CGGGAGGATTACTCG  55 152
SH02_RS17635 3551179 .. 3551197 -    -6  -3.94933   GCAAGTCGAAAAATA             TGACGCTA CTT TAGCGTAA             TTGCTTGATTTTGTC  66 263
SH02_RS17625 3550580 .. 3550599 -  -3.6    -3.543   CGAGAAAAGCGATAA            CGCTTCACT CAC AGC-AAGCG            AACATCCACGGCGTC  51 14
SH02_RS17620 3550148 .. 3550176 -  -2.4  -2.79831   GTAATGGTGACCATA       TGTGCAGGC-CTA CAAT TAGTGCCACCACA        TCATGCCCTGAACGG  41 12
SH02_RS17615 3548379 .. 3548391 -  -2.6  -3.69283   GAAGCTATCTAACAA                CGGC ATTTA GCCA                CCTCCGGTAATTTTT  50 168
SH02_RS17610 3547816 .. 3547835 - -12.2  -3.50422   ACTAAGTACAACTAA            GCCAGTTC ATTT GAACTGGC             TTTTTTCAATTAATT  91 59
SH02_RS17535 3533035 .. 3533045 -  -8.2  -2.66272   CGGCACGCAAAGTTA                 GCCC GTC GGGC                 TGGATAAAAAATCTG  59 281
SH02_RS17525 3531700 .. 3531737 -  -8.4  -2.59039   AACGAGCTTGAGAAG   CGACGCCGGACG-CGCC CTAGC AGCGACATCCGGCCTCA   GTAATTAGATCAGGA  63 30
SH02_RS17510 3530486 .. 3530505 - -12.8  -3.29649   AGTGTAGCAGAGGAA            CGCGGCGC GTTA ACGCCGCG             GGGATGAGCACAGGT 100 41
SH02_RS17505 3529929 .. 3529950 -  -4.3  -3.07816   GCGCCAGTGAGTTAA           TGCGCCAGC ATTT ACTGACGCC            AATTCCCATTATCCA  48 63
SH02_RS17455 3519198 .. 3519221 -  -4.5  -2.63164   CCACATGTAAGCAAT          TTGCCCGCT TGGCAT AGCAGGCAT           TTTTTCCAGGTACTT  48 217
SH02_RS17445 3518146 .. 3518160 -  -2.9  -2.62098   TAAGTAAACCAACAT               GAAAA TCACT TTTTC               TTATATTATCGAAAA  41 45
SH02_RS17440 3517143 .. 3517166 -  -7.4  -3.77491   CACCAAATAAATCAA          GGGGTTACAT GAAA ACGTAGCCCC           TTTTTCTTTGGTAGT  70 148
SH02_RS17435 3516520 .. 3516537 -  -4.2  -3.45027   ACCGCTCATCAAAGA             CATCAT GATGAA ATGATG              ATATTCCGCATAAGA  52 204
SH02_RS17425 3511767 .. 3511782 - -10.4  -3.92324   CCTGGTAACATGAAA              GCCCAC AGAT GTGGGC               TTTTTCGTTGATGGT  89 40
SH02_RS17395 3505825 .. 3505842 -  -5.5  -4.06904   GTATCTAATTACAAA             GTGACAG AGAG CCGCCAC              GCCAGCGCGGCCAGA  63 1
SH02_RS17390 3505293 .. 3505317 -  -5.5  -3.84406   TCCCTACCATAACAA          CCCTGATTGCC TCC GGCGGTCGGGG          GTTTCTTTTTTCTCC  61 199
SH02_RS17345 3498822 .. 3498832 -  -2.6   -3.3095   AGACATCCGTGACAA                 TTTT GCG AAAA                 TTAAGGAGATGTTAT  46 357
SH02_RS17340 NONE
SH02_RS17335 3494843 .. 3494867 -  -7.2  -2.87325   ATTTTTTACAACAAT          GGCCTTTC TTATGGCTG GAAAGGCC          TGATTTGTTTGTATT  59 160
SH02_RS17315 3491057 .. 3491084 - -12.8   -2.8733   TGTCGGATAAAATAT        TTATCAGCCCAG CTCT CTGGGCTGATAT         TTCTAAAAGATCGCA  91 236
SH02_RS17300 NONE
SH02_RS17295 3487629 .. 3487645 - -12.3  -5.10077   AAAGACGTTAAAAAA              GGTGCTC AAT GAGCACC              TTTTTTCTGTCTGTT 100 39
SH02_RS17275 NONE
SH02_RS17270 3483718 .. 3483743 - -14.7  -4.45544   GCGGAGTAACGAAAA         CGGCCCGGCAT TCGC ATGCAGGGCCG          TGAATTATTACGAAA 100 48
SH02_RS17255 3479860 .. 3479892 -  -9.2  -4.63218   CTTGTGTGAATAAAA     CAACCGGACCCCATC GAGG AACGGAGTCCGG-TG      TCATATTAAAAGCCC 100 218
SH02_RS17250 NONE
        rimM NONE
        trmD NONE
SH02_RS17235 3477782 .. 3477803 - -11.5  -5.51046   CAAACAGATAAAAAA           GGGCCAGCC AATT GGCCAGCCC            TTCTTAACAGGATGT 100 56
SH02_RS17210 NONE
        tyrA 3472563 .. 3472592 - -15.1  -4.28361   CCAACCTGATGAAAA       GGTGCCGGATGAT GTGA ATCATCCGGCACT        GGATTATTACTGGCG 100 32
        rluD NONE
SH02_RS17175 3467867 .. 3467881 -  -5.7  -3.83998   CTACTGGAGATTAAA               TGAGG TCATC CCTCA               ATTATTCAAGGTTAT  63 98
SH02_RS17170 3465224 .. 3465241 - -12.7  -5.04597   ACTTATAGACAAAAA             CGAGCCC CGAA GGGCTCG              TTTTATCATTTACTG 100 35
SH02_RS17165 3463233 .. 3463246 -  -2.3  -2.72471   TTTTCATCAGACAAT               CTGTG TGAG CACTG                CAAAGTACGCTTCTT  40 34
SH02_RS17160 3462961 .. 3462972 -  -4.4  -4.09503   AAATATATCAAACAA                GACT TAAC AGTC                 TGTTTTGAGATATTG  61 73
SH02_RS17155 3459843 .. 3459856 -  -2.4  -2.78679   GGCCGCCAGGCAAAT               TCTG TTTTAT CAGA                CCGCTTCTGCGTTCT  41 84
SH02_RS17150 NONE
SH02_RS17145 NONE
SH02_RS17140 3457740 .. 3457756 -  -9.4  -3.51032   ATCCTGTAATCACAA              CCCCGT CCTGT ACGGGG              TTTGTTTTTTGGAGG  76 368
SH02_RS17110 NONE
SH02_RS17105 3451108 .. 3451135 - -13.4   -3.5394   AAATTTGCGGGGAAA        TGCCGGATGGCA GAGT TGCCACCCGGCT         GATTTATCAGGCTTT 100 32
SH02_RS17095 3449671 .. 3449694 - -16.8  -5.65513   TATTAACGAAAAAAA          GCGGAAGAGG TCGC CCTCTTCCGC           TTAGTAACTTGCTAC 100 48
SH02_RS17085 3448064 .. 3448083 -  -7.1  -3.80625   TGTCGACAAGTTAAA            TGCCGGG TTTAAT CCCGACA             TTATTTTTATCCAGC  70 32
SH02_RS17070 3445487 .. 3445513 -  -6.6  -3.62775   ACCATGCTCCAACAA         GAAATAGACGAA TAT TACGCCCATTTC         CGCGTCTCAAATAAT  63 190
SH02_RS17060 NONE
SH02_RS17055 NONE
SH02_RS17050 NONE
        rseB NONE
SH02_RS17040 3440963 .. 3440980 - -11.3  -4.32607   GCAAAATGCAACAAA             GCCAGTG AAAT CACTGGC              TCGCGTCTTCCGAAG 100 18
SH02_RS17035 3438940 .. 3438961 -  -5.1  -2.68015   GGCAATCACCAGAAT           CAGGGCAAA CATA TTCGCCATG            CCAACTCCTAAGGGT  49 40
SH02_RS17030 3437941 .. 3437973 - -21.5  -4.07877   TTATCTCATAAATAA      TTCACGTTGTCGCCA TAA CGGCGACAACGTGAA      CGAAGATGGCTATTA 100 38
         rnc NONE
SH02_RS17020 NONE
        recO NONE
SH02_RS17010 3434637 .. 3434652 -  -2.6  -2.71924   TATCCGTGCCTAAAC              CTAATA TTGC CATTAG               CCACGCGCTTCCAGC  41 22
        acpS 3434208 .. 3434244 - -11.6  -4.83759   AATTAAAGTTAAAAA    GTAAAACCCCCGTTCC TTACC AGTTCGGGGGTTTTAC    TTTTTAAAGAGAACG 100 50
SH02_RS16995 NONE
SH02_RS16990 3433719 .. 3433748 - -15.1  -3.78022   TTTATAGTTATTAAA       GGTGCGTCCGACTG GTT CA-CCGGACGCACC       TTAAGTACGTTTCCT 100 45
SH02_RS16975 NONE
SH02_RS16970 3430606 .. 3430622 -  -5.1  -3.28712   CCTCGCTGCGTACAA              TATGGGC TAT GCGCATA              TGCTGGATGCCCGCG  54 408
SH02_RS16960 3425229 .. 3425246 -  -8.4   -5.4492   TACAGACACAAAAAA             GCTCCC GGAGTT GGGAGC              TTATGATAGTGGTTG 100 86
SH02_RS16955 3423296 .. 3423310 -  -2.8  -5.01553   AACTGACAAATAAAA               TAGCCT GAT AGGATA               GGCTGTTAGCATTAT  70 37
SH02_RS16950 NONE
SH02_RS16945 NONE
SH02_RS16940 3420637 .. 3420651 -    -5   -4.3534   CGTGAAGCAGGAAAA               CATTCA TTA CGAATG               CTTTGGCCCGCATAA  67 95
SH02_RS16930 3417727 .. 3417744 - -11.3  -4.00066   GCGATAACGTAGAAA             GGCTTCC CGAA GGAAGCC              TTGATGATCATAAAC 100 186
SH02_RS16920 3413097 .. 3413110 -  -2.5  -3.53012   CGCGTGCCGCTCAAA               TATTA CAGT TAATA                GGGTTTAGTGAACGC  48 30
SH02_RS16915 NONE
SH02_RS16910 NONE
SH02_RS16905 3409439 .. 3409474 -  -3.8  -3.30452   TAACAATACGATTAA    TTTTCATCCCTGCCGC ACCC GCGCCAGGGGCGTTAA     GGTTTAGCGTTTCGC  49 29
SH02_RS16900 NONE
SH02_RS16895 3407426 .. 3407457 - -14.4  -3.44848   CGGCGTTAGGAAAGA      TGCCGGATGCGGCG TGAA CGCCTTATCCGGCA       TTTAATAAATTACAG 100 35
SH02_RS16860 3401651 .. 3401670 -  -3.6  -3.23855   TGTTGCAAAAATAAT            GCGTAA TTATGCCG TTACGC             TTGCCAAACGTTCCT  49 12
SH02_RS16855 3400350 .. 3400363 -  -2.4  -4.13282   AGCAGATCCGCAAAA               TGCT CGAATC AGCA                TGAGGGAACAACTTT  55 20
SH02_RS16835 3396202 .. 3396216 -  -7.8  -3.30124   CTGTAGGCCTGATAA               GACGCA TTA CGCGTC               GCATCAGGCAACGGC  66 43
SH02_RS16830 3395195 .. 3395218 -  -2.4  -2.91593   CATTGCTCTATAAAC          TCCGTACATC ACTC AATGCAAGGA           ATCAGGCTACCGGCT  42 101
SH02_RS16825 NONE
SH02_RS16820 NONE
        iscA 3393172 .. 3393198 -  -8.7   -4.6951   ATCAGGTAAAACAAA        CCCCACGCGCAG GCGA CCACG-GTGGGG         TTATCGGTATGCGCA 100 41
        hscB 3392582 .. 3392593 -  -2.2  -2.78867   CTAATTTGTAATAAG                GCCA TGTT TAGC                 TTCCAGAAATTAAAA  41 35
        hscA NONE
SH02_RS16800 NONE
SH02_RS16795 3390033 .. 3390052 - -12.8  -4.07568   TCCTTCTTTGTAAAA            GGGCCGCC AGTT GGCAGCCC             CAGGATTTTTCCGCT 100 160
SH02_RS16790 3388697 .. 3388708 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCATATTA  64 43
SH02_RS16785 3387720 .. 3387734 - -11.4  -4.10744   CGAGGTAAATAATAA               CCGGAG TCT CTCCGG               CGACAATTTACTGGT 100 99
SH02_RS16775 NONE
SH02_RS16770 3378627 .. 3378640 -  -2.5  -4.09511   AACATTTTTTTAAAA               TAAAA TGAG TTTTA                GCAACAATCAGGGAC  57 49
SH02_RS16765 3377992 .. 3378023 -  -8.7  -5.04249   GGTTGAAAAAAGAAA     CG-CCCCGG-TGAGC GGCT GCTCGTCCGGGGGCG      CTGCATTGTACAAAT 100 86
SH02_RS16760 3376738 .. 3376775 -   -18  -4.42653   ACTTCATTCATAAAA   CATTACGCCACGG-TAC ATAAA GTAACCGTGGCGTAATG   GCTATCAGACCGCTT 100 30
SH02_RS16755 NONE
SH02_RS16750 3374308 .. 3374328 - -13.3  -3.00298   GGGTTCAATCATACA            CGGGAAGCG AGG CGCTTCCCA            TCACGTTATTATTTT 100 34
        hisS NONE
SH02_RS16740 NONE
SH02_RS16735 3371074 .. 3371105 - -13.8  -3.90048   TCGTTGTTAAAAACA      GGAAAACGGCCCCT GTCC AGGAGCCGTTTTCA       AAGTGAACGACAGAG 100 45
SH02_RS16730 NONE
SH02_RS16725 3369176 .. 3369188 -  -7.7   -2.9296   GAAATGCTAACCACA                CGTCT GGA AGACG                GCTGGATAGAAAGTG  58 87
SH02_RS16715 3366226 .. 3366248 - -14.9  -4.33674   AACAGATAATATAAA           TCGCCCGAC ATGAA GTCGGGCGA           AGAGAATCAGGAGCC 100 32
        guaA 3364561 .. 3364580 - -12.2  -5.47159   CTTGAAGATAAAAAA            CCCTCTGT AGTA ACAGAGGG             TTTTGTTCATTCATA 100 54
SH02_RS16690 3362717 .. 3362730 -  -3.9  -3.34629   ATATGAAAGTACCAA               TTGAT ATAT ATCAA                ACAAAATAACCCTGA  49 66
SH02_RS16685 3360310 .. 3360344 -  -9.2  -3.02043   AATCGCCGCTTAATA     CTTTGCGGGCCGAC GAGAAAT GTCGGCCCGCATTA     TTCAGGCACTTTCGC  71 27
         upp 3353860 .. 3353878 -   -11  -5.81412   TTTACTCAAAAAAAA             GCCGACTC TTA AAGTCGGC             TTTAATTATTTTTAT 100 44
SH02_RS16655 3352478 .. 3352528 -  -2.4  -2.72649   AGTTTACCACAGAAT CCCATGATGTTTGAACCGGGCAGC AAC ACTGCCCGGTCGGTACATTATTTG TCTGTTATATCCGCG  40 19
SH02_RS16650 3351306 .. 3351318 -  -2.6  -4.86731   CCTGCTGAAAGAAAA                CGGC GTGGA GCCA                GAAGTGGTGCTCTAC  68 433
SH02_RS16635 3348438 .. 3348467 - -16.5  -4.62872   AGGAACCCTGAAAAA       TCAGCCCGGCGAA ACAG TTCGTCGGGCTGA        AGATTATTCTTGCGC 100 29
SH02_RS16560 NONE
SH02_RS16555 3331455 .. 3331474 - -11.4  -5.34555   TCATATCAGAAAAAA            GGGCCGGA TGAT TCCAGCCC             TGTATTTTTACTTGC 100 33
SH02_RS16545 3330544 .. 3330563 -  -2.8  -2.75074   TGCACGGCAAGATGA            TGAACAGA AAAA TCAGTCCA             GCTGTACACCCAGGC  42 18
SH02_RS16540 3329530 .. 3329546 -  -2.3  -3.75153   GCCCCGGAAGTTAAA              TGCTTTT ACC AAAAGTA              TTGCATTGTGCCGGA  51 4
SH02_RS16535 3327410 .. 3327424 -  -4.2  -2.71055   TTGAACAACAAAATG               GTCATG TTT CATGGC               GAACTCCTTAACTGA  45 96
SH02_RS16530 3326643 .. 3326695 - -14.8  -2.57931   CGTAGGCCGGATAAG GCGTTAACGCCGCATCCGGCAATG GTGAA CGATGCCTGATGCGACGCTCACGC GTCTTATCAGGCCAG 100 53
SH02_RS16495 NONE
SH02_RS16490 NONE
SH02_RS16485 3314971 .. 3314993 -  -4.1  -3.74077   GTTCAGAGATGGAAA           TTACCCTGC AAGCG GCAGAGAAA           TTAGCAGGAGAAGGT  56 417
SH02_RS16470 3309704 .. 3309732 - -12.6  -3.66378   TATATTGCAGCTAAA       CTGCTTACCCTGA ATAT TCAGGGTAAGC-G        TGAGAGTTAAAAAAA 100 42
SH02_RS16465 NONE
SH02_RS16460 NONE
SH02_RS16455 NONE
SH02_RS16450 NONE
SH02_RS16445 NONE
SH02_RS16440 3305775 .. 3305800 -    -9  -3.15182   ATGAAAAAGGAGAGA         GCGTGACGCC CGAATC GACGTCACAC          AGGGTGATTACAGGT  69 33
SH02_RS16435 NONE
SH02_RS16430 3304004 .. 3304020 -  -8.7  -3.55444   CTGTTACTCCTTAAA              CAATGCG AAA CGCATCG              ACTAATACACAGCGA  73 4
SH02_RS16425 NONE
SH02_RS16420 3301807 .. 3301852 -    -9  -3.53811   CGGATGCGGCGTAAA CGCCTTATCCGCCCTACATG TGCAAT CCCGTAGGCTGGATAAGACG CGGCAAGCGTCGCAT  73 148
SH02_RS16415 NONE
        eutA 3299124 .. 3299141 -  -4.1  -2.58544   CTTTAGTTTCATAAG             TCGTTCC CTCA GGAAGGA              AATGCGAGTGATTTC  45 16
SH02_RS16405 NONE
SH02_RS16400 3296834 .. 3296850 -  -2.1  -3.89336   CGAATCAAATCTAAA              GCTGGCA TGA TGCCTCC              TTATCGGGTCATGTT  51 26
SH02_RS16395 NONE
SH02_RS16390 NONE
SH02_RS16385 3294329 .. 3294349 -  -6.7   -3.6682   GTCGAGCGACGGAAA            GCGATGGCC TAC GGCGAGCGC            GAGCGCAATTTCCAG  63 247
SH02_RS16370 NONE
SH02_RS16365 NONE
SH02_RS16360 3291008 .. 3291026 - -10.3  -4.20868   TCCTGAAAATAATAA             TGCCACG CAATC CGTGGCA             TTGTTGAGCGCTATT  91 81
SH02_RS16355 3289854 .. 3289881 -  -8.4   -5.2204   CAGAAGTAATAAAAA        GGCCAGTCAGTA ATGT TACTGGCTGGTC         TGAGAGTGCTGACAA 100 231
SH02_RS16335 3285089 .. 3285101 -  -5.5  -3.06696   CTCCTTGTTAATACA                GAGCG TTA CACTC                CATTCCCTCTGAAAA  52 117
SH02_RS16330 3284237 .. 3284260 -   -11  -3.93038   TAGTTCAAGACGAAA          TCCTCCCCAC AAAT GCAGGGAGGA           AACAGAGGTGAATCA  90 38
SH02_RS16325 NONE
SH02_RS16320 NONE
        cysW NONE
SH02_RS16310 3280109 .. 3280136 -  -9.1  -4.72272   CCTTGCCATTAAAAA        GCCCGGA-TCGC GGGAA GCGCCTCCGGGC        GTTTAACATTCACTC 100 47
        cysM 3278961 .. 3279019 -  -2.3  -5.06103   ACAACTGTTAAAAAA GTGCGCTTTGTTTATGCCGGATGCGGCG TAAA CGCCTTATCCGGCCTACA-AAATCGTGC TAATTCAATATATTG  68 119
        pdxK 3276804 .. 3276821 - -12.7  -4.65895   TGCCGCAGTGAAAAA             TGGCGCC CATC GGCGCCA              TTTTTTTATGCTTCC 100 31
SH02_RS16260 3270640 .. 3270656 - -10.8  -4.67904   CATCAATGCTAAAAA              CCCCCG ACAAG CGGGGG              TTCGAAGAGGAGTTA 100 57
        ligA NONE
SH02_RS16250 3268346 .. 3268379 -    -3  -3.12505   ACGCCAGACCGAACA     GTTACAGGCGCAGC AGGAAA GCAGCGCCGATAAA      GCTTAAAGCGGACGC  46 28
SH02_RS16240 3266052 .. 3266076 -  -7.1  -2.84999   ATCAAACCTATTACA          CTGGCGACA ACGGCTA TGTCGCCGG          CTGGGTTGCAGGTTA  54 320
SH02_RS16230 NONE
SH02_RS16225 3263139 .. 3263161 - -11.3   -4.4648   ACCTTTATCATAAAA           GCAGCTCTG AAGAG CAGAGCCGC           GAATCCTTTTAATGA 100 34
SH02_RS16220 3262938 .. 3262954 -  -2.3  -3.48772   AAGTGCTCCATATAA              TAAATAC ATC GTATTAA              ATTATCATGGCATAA  47 30
SH02_RS16215 3261936 .. 3261950 -  -9.2  -5.17576   CACCAATGTAAAAAA               GCGCCC TAA AGGCGC               TTTTTTGCTATCTGC 100 109
        gltX 3259655 .. 3259677 -   -12  -5.73978   AGCATAAATAAAAAA           CGGCAGGATA TTA TCTCCTGCCG           TTTATCTTTTTACAC 100 46
SH02_RS16175 3258579 .. 3258593 -  -4.3  -2.50816   CGTTTACGTACCAAG               TTTGC TGGGT GCAAA               ATTTGGTGGAGCTAA  45 29
SH02_RS16170 3258453 .. 3258472 - -11.4  -5.43414   AGCAGAGACAAAAAA            CCCCCGCT TTGC AGCGAGGG             TTGGAAATTTGGTGG 100 35
SH02_RS16165 3255908 .. 3255934 -  -3.6  -5.34365   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  80 175
SH02_RS16150 3251793 .. 3251824 -   -13   -2.6627   CCAATGGAGCACAAT      GCCTGATGCGACGC TAGT GCGTCTTATCAGGC       CTACAAACCGGCTCT  91 110
         glk 3248865 .. 3248888 - -11.8  -2.81922   TATGATTTAAAAGAT          TATCGGGAGA GTTA CCTCCCGATA           TAAAAGGAAGGATTT  83 39
SH02_RS16125 NONE
SH02_RS16120 NONE
SH02_RS16115 NONE
SH02_RS16110 3244926 .. 3244941 -  -3.3   -3.0644   ATTGAATCGTTAACA              TAACC GCTCCG GGTTA               ATCAGGAGATCATCT  44 35
SH02_RS16105 3242079 .. 3242090 -  -5.8  -3.02144   GTAGCGTGGTGAATA                TGCC GCCG GGCA                 ATTCGCAGCCGCGCG  53 366
SH02_RS16085 3237456 .. 3237475 - -13.6   -4.8622   CTGTGCAATGAAAAA            CAGGAGCC ATCA GGCTCCTG             TTTGCATTTCTGACG 100 48
SH02_RS16075 NONE
SH02_RS16070 3235260 .. 3235270 -  -5.4  -5.15381   AAGAGACTGAAAAAA                 CATC AGC GATG                 ACGACCACACACTCT  83 154
SH02_RS16060 3234117 .. 3234153 - -11.9  -3.92542   GCGAGCGCCAAATAA    TTTTATGACCACAAC CTGTCGT ATTGTGGTCATAAAA    AATTGTCGGCTGGAG 100 80
SH02_RS16055 3232420 .. 3232438 -  -4.4  -2.94161   GAAATTTTTATAAAT             TGGGAGCC AGA AGCCCCCG             TTAATATCAGATGGC  47 32
SH02_RS16050 3230645 .. 3230685 -  -3.1  -3.30441   TAGTATTTCCGATAA  GGGTCCCCTCACCATCGCA TAA TGAGTTGGCAAGAGGAGAC  GATGTCAGTATTTAA  47 37
SH02_RS16045 3229630 .. 3229654 -  -6.5   -5.0133   TATGCCTTGAAAAAA         GCCGAAG-GT GAAAAG ACACTTCGGC          ATTTATGTAAAATCA  84 54
SH02_RS16040 3228296 .. 3228310 -  -6.4  -4.09519   ATCAGTTAGAAATAA               CACCTG TTT CAGATG               ACAGTAAGCCTGAAA  68 179
SH02_RS16025 NONE
        emrB 3220855 .. 3220902 -  -7.1  -3.22884   TCAGTAAGTTACCAA CAGATGCACGGTTTCAGCGCAG AACAA CTGCG-TAATACCACTCATCTG GTGTGGGCGACGGGA  57 202
SH02_RS16005 3217001 .. 3217034 -  -7.4  -3.36289   CACCATTCCAATCAA     TCCCCTGCTG-CTTC AAGTA GATGTCTGCAGGGGA     CACCATCCTTGTGTT  64 126
SH02_RS22930 NONE
SH02_RS15960 NONE
SH02_RS15955 NONE
SH02_RS15950 NONE
SH02_RS15945 3211354 .. 3211368 -  -7.1  -2.86747   GATGCAGCAGAAGCA               CAGCG CCAGT CGCTG               ATTGATACTGCAATG  54 174
SH02_RS15905 3204657 .. 3204676 -  -7.9  -5.68489   GATAACAACAAAAAA            GGTGAGT TTTGCG ACTCACC             TTTTTTATTTGTTTC 100 41
SH02_RS15890 3201046 .. 3201072 - -20.2  -5.26907   GAAGAGAAAAGAAAA         CGCCCCTGCCAG CAA CTGACAGGGGCG         TACGTACCCGAGAGG 100 43
        fadI NONE
        fadJ 3197387 .. 3197410 -  -4.6  -2.90571   AATGGCGTAAGTATA          GTCAATATGC GTTT ACATTTTGAC           CAACACTCCGCCATT  50 70
SH02_RS15875 3196723 .. 3196755 - -14.4  -3.21099   CTGCCTGATGAGCAA      TTATGCCCAATGAA TCTAC CTCATTGGGCATAA      TTTGGAACTCATCAG 100 37
SH02_RS15870 3195492 .. 3195515 - -13.2  -3.42684   AAATCCATTTAAATA          CCCCATAGCA GTGT CGCTATGGGG           GTATGCCTTACAGGT 100 33
SH02_RS15865 NONE
SH02_RS15860 NONE
SH02_RS15855 NONE
SH02_RS15850 NONE
SH02_RS15845 NONE
SH02_RS15840 3189248 .. 3189259 -  -3.6  -3.45027   AGCCGTTATTAAATA                CCGA AGGT CCGG                 TGAAATATGTTCGCC  51 434
SH02_RS15830 NONE
SH02_RS15825 NONE
        mepA NONE
SH02_RS15815 NONE
SH02_RS15810 NONE
SH02_RS15805 3184285 .. 3184299 -  -7.1  -3.30124   GTGTAGGCCTGATAA               GACGC GATAA GCGTC               GCATCAGGCATGCTG  64 57
SH02_RS15795 3180728 .. 3180745 - -11.3  -4.64598   CAATGATGTGAAAAA             GGGAACC ATCA GGTTCCC              TTTTGCGTTAGTGCC 100 105
SH02_RS15790 3178925 .. 3178936 -  -4.4  -2.83522   AGCTGGTGACCAAAC                TTGC GGCG GCAA                 CGGGGGAACCCAGCA  46 471
SH02_RS15780 3177115 .. 3177142 -  -7.7  -4.04579   TCCAGAAATAGCAAA        GCTCCCTGCCA ATGTTA CAGCAGAGAGC         ATGAAGAAGAGATTA  74 38
SH02_RS15775 3176079 .. 3176096 -  -4.1  -2.62184   GCTGGTCGGACATTA             GTACAGA TACT CCTGCAC              CAGTTTCTCGGCGAT  45 5
        truA NONE
SH02_RS15765 3174498 .. 3174510 -  -3.3  -5.24531   ACTTTGGATAAAAAA                GTGGT CGA ACCGC                GGAGTTACTTTTTAT  75 37
SH02_RS15760 3173419 .. 3173441 -   -17  -4.46656   GTGAGAATAGCAAAA           GGGCAGAGCC AGT GGCCCTGCCC           TTATCAGTTATCAGG 100 36
SH02_RS15755 NONE
SH02_RS15750 3171306 .. 3171331 -  -9.8   -5.1356   GCGCATCAATAAAAA         TGGCGCTGAA AAAATA TTCAACGCCA          TCGACTTTTTATGCC 100 156
SH02_RS15745 3170714 .. 3170730 -  -2.9  -2.64243   CCACATCTCAGAGCA              CTTACGC TCT GGGCAAG              AAACTTGACGAGCTT  41 10
SH02_RS15740 3169130 .. 3169148 - -12.4  -2.53263   GGGAGTTGCAAGTCA             GGGTGCCA GAC CGGCACCC             TCAGCGAAGGCATCA  86 38
SH02_RS15735 3168470 .. 3168488 - -13.2  -4.07687   ATCGCGGTTGCAAAA             TTGCCCTG AAA CAGGGCAA             CAGCGGAGTTATGCG 100 34
SH02_RS15730 3167298 .. 3167308 -    -4   -4.3739   TATCGTGCCATAAAA                 TTGA CCA TCAA                 GGCAAAATATCCCGC  63 166
SH02_RS15725 NONE
SH02_RS15720 NONE
SH02_RS15715 NONE
SH02_RS15710 3164146 .. 3164169 - -12.4  -3.73042   TTCCCCATGAAAATA          CTCCGGCAGC GTTA GCCACCGGAG           AGGAAATTATTTCAG 100 32
SH02_RS15705 3162565 .. 3162605 -  -6.8  -3.93583   GAATTTACCCATAAA CTCTGCGCTC-GCTGGGAA GAAA TTGCCTGCCGGGCGCAAAG  TGACAAAACGCGAGT  68 509
SH02_RS15685 NONE
SH02_RS15680 3159685 .. 3159699 -  -3.5   -3.2115   TAAATTACGGATTAA               TCGCG ACCTG CGCAA               TGATACTTTGATCAT  48 0
SH02_RS15675 3159053 .. 3159066 -  -9.5  -3.17553   CTAAAAATGTTAAGA               GCCGC AATT GCGGC                TCTTTTTTCATTCTG  72 33
SH02_RS15655 3153609 .. 3153624 -  -3.3  -3.45707   TAAAGATTCAAAAAT              TTGTG CAAATT CACAA               CTCAGCGGGACAACG  49 42
SH02_RS15650 3153073 .. 3153091 -    -6  -5.76949   TACGGTGAAAAAAAA             GAAGGC TGAGTAT GCCTTC             TTTTATATGCGTAAT 100 51
SH02_RS15645 NONE
SH02_RS15640 3151842 .. 3151859 -  -9.8  -5.24129   TTCTGCCATAAAAAA             GCCCCG ACGAGA CGGGGC              TAAATCATGATCAGG 100 45
SH02_RS15635 3149597 .. 3149607 -  -3.2  -5.09225   AGGCTATTGAAAAAA                 TCGC TCA GCAA                 AAACTGGTCGATATG  77 378
SH02_RS15620 3146068 .. 3146097 -   -15  -5.86061   TTTTACTAAAAAAAA       GCCGCTGGGGTT TAAAAC ACCCCCAGCGGC        TCGTTTTTTACACTA 100 71
SH02_RS15615 NONE
SH02_RS15610 NONE
SH02_RS15605 NONE
SH02_RS15600 NONE
SH02_RS15595 NONE
SH02_RS15590 NONE
SH02_RS15585 NONE
SH02_RS15580 NONE
SH02_RS15575 NONE
SH02_RS15570 NONE
SH02_RS15565 3133505 .. 3133517 -  -5.5  -4.08216   TTATTCCTTGTAAAA                GTCCC GTC AGGAC                CGGATTTTCAACGAA  65 153
SH02_RS15560 NONE
SH02_RS15555 3130445 .. 3130463 - -11.7  -4.82901   TCTTTTTCAGAAAAA             CCGCCGA GCATG TCGGCGG             CTTTCTGACTTACAA 100 50
SH02_RS15540 3128022 .. 3128037 -  -4.7  -3.28001   CATTGTTAAATGCAA              TACCG TATATT CGGTA               TGTAACAGCGATATC  53 138
SH02_RS15525 3124381 .. 3124414 - -22.7  -3.35073   ATCATTGTTAATTAA     TTCGACCAGTCAGCA AATA TGCTGACTGGTCGAA      CATAGTTTGCTAAAC 100 46
SH02_RS15510 NONE
SH02_RS15505 3121118 .. 3121148 - -13.4  -2.85847   AAGCCTCACATTATA       CGGGGTACTACA AAAAAAA TGCAGTACCCCG       GTGTAGGGAGGTTTT  93 39
SH02_RS15500 NONE
SH02_RS15495 NONE
SH02_RS15490 NONE
SH02_RS15485 NONE
SH02_RS15480 NONE
SH02_RS15475 3114028 .. 3114042 -  -5.8  -3.23045   ATTTACAGATTAACA               GATAAA CTC TTTATC               AACGGCAATGGAATG  55 71
SH02_RS15470 3113542 .. 3113556 -  -2.1  -3.88985   AAAACGCTTCATAAA               CTTGC GCTAA GCAAA               GCCTATGCCTTGCTC  54 181
SH02_RS15430 3105426 .. 3105447 - -13.1  -2.93073   CTTCTGTAACAATGA           TGACAGCCA TTAC TGGCTGTCA            GATTGAAAATTTAGT  95 36
SH02_RS15420 3104143 .. 3104165 - -11.2  -3.38832   TAGTAAGAAACTGAA           TGGCGCGACA GAA TGCCGCGCCG           GAAGGGATCAGAAAC  81 33
SH02_RS15415 3102852 .. 3102868 -  -7.9  -3.72576   TGCCGGTGCAGTAAA              CCGGCAC AGA GTGGCGG              AATCAGACAGATAAG  70 28
SH02_RS15410 NONE
SH02_RS15405 3100612 .. 3100645 -  -8.1  -3.21772   AAGCTCCTTAGAATA     TGTGGGCGTTACCGT TGTC ACAGCAACGCCCGGA      GTGATTAGTGGCTGT  63 30
SH02_RS15400 NONE
SH02_RS15395 3098447 .. 3098479 -  -7.7  -3.43553   ATAACCACTAATTAA      CACAGGCCCACAG CCGATCC CCATGGGCCTTTG      ATATCAATAACTACC  68 29
        glpT NONE
        glpQ 3090342 .. 3090367 - -15.5  -2.86743   AAATTTGATATGAGA         CAGGATGGCGC ATGA ACGCCATCCTG          CAGTAACATTACTCT 100 34
SH02_RS15350 3089160 .. 3089185 -  -7.6  -3.53811   TTCAGCCGGGGGAAA         TTTTGCCCTG TTGTTG CCGGGCAAAA          GGCGATATTGAAATC  68 103
SH02_RS15325 3080815 .. 3080826 -  -7.2  -3.30124   CCGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCAACCGT  64 57
SH02_RS15315 3077161 .. 3077182 -  -8.7  -4.55023   CCTAATACGACAAAA           GCCCAGACT TTGC AGCCTGGAC            TTTTCAATTCAAACA  93 77
SH02_RS15310 NONE
SH02_RS15305 3074742 .. 3074764 -  -6.3  -2.53894   ATCAGCATTAGCAAG          CCCTGTTCCC ACAA GAG-ACAGGG           ACAAGCACGCTGCTA  53 38
SH02_RS15300 NONE
SH02_RS15295 NONE
SH02_RS15290 NONE
SH02_RS15285 3067735 .. 3067779 - -13.2   -3.3482   GAACGGTTGAATTAA TCAATAAAAACACCCGATAGC GAAA GTTATCGGGTGTTTTC-TTGA ACATCGACGGCGAAG 100 54
SH02_RS15250 3057405 .. 3057457 - -12.7  -2.59298   TAGGCCAGATAAGAC GCGTCAGCGTCGCATCTGGCATT TGCACTG AATGCCGGATGCGGCGTAAACGC CTTATCCGTCCTACG  88 36
SH02_RS15235 NONE
SH02_RS15230 3053456 .. 3053467 -    -3    -3.965   GGTTAAAATCAATAA                CTTA TTCT TAAG                 TATTTGACAGCACTG  56 7
SH02_RS15225 3052052 .. 3052065 -  -9.5  -5.43514   AAAACAATGAAAAAA               GGGCC CGCA GGCCC                TTTGTTCGATATCAA 100 47
SH02_RS15220 3050868 .. 3050881 -  -2.3  -2.70932   CTCCCTGGTTAAGGA               TAGCC TTTA GGCTG                CCCGGTCACCATCAC  40 64
SH02_RS15215 NONE
SH02_RS15210 NONE
SH02_RS15205 3047372 .. 3047402 -    -9  -2.79183   GGGATTTTTAGCATA       TTGACCTGACGG CAGCAGT CCGCCAGGTCAG       CGTCGTAATATTATG  67 36
SH02_RS15200 3045511 .. 3045543 - -26.5  -2.82516   CGTCTTATCAGCATA      CGCCACATCCGGCAT ACC ATGCCGGATGTGGCG      TATCATTACAACGCA 100 31
SH02_RS15185 NONE
SH02_RS15180 NONE
SH02_RS15175 NONE
        napG NONE
        napH NONE
        napB NONE
SH02_RS15155 3038090 .. 3038100 -    -4  -3.09193   AGCATACCCACGCAA                 TAAC CCT GTTA                 AAAACCTGGCTCGAC  49 23
SH02_RS15150 NONE
SH02_RS15145 3036800 .. 3036826 -  -3.1  -2.59883   AAAATCAGTAATCCA        GCGTTATTGAAT GCTG ATTCG-TAACGC         TGCCGCCGTCGCAAA  42 2
SH02_RS15140 NONE
SH02_RS15135 NONE
SH02_RS15130 NONE
SH02_RS15125 NONE
SH02_RS15120 3032846 .. 3032858 -  -3.3  -5.07486   CACGCCCAATAAAAA                CCTCA TTG TGCGG                CCTCCTTACTGTATT  71 15
SH02_RS15115 3031592 .. 3031618 -    -8  -5.18726   GGGGCACAATAAAAA         TAGCCCGATG GATTTAT CATCGGGCTG         AGATTTATGACAAAC  95 206
SH02_RS15105 3030647 .. 3030660 -  -2.4  -2.73701   TCCTATGAAATTAAT               TGCT GTTAAA AGCA                TTGGGTACAGAAAAT  41 17
SH02_RS15100 3029459 .. 3029470 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH02_RS15095 3026746 .. 3026762 -    -8   -5.4756   AATCCCAAGAAAAAA              CCAACC CTTAC GGTTGG              TTTTTTTATATCTGC 100 94
SH02_RS15075 3023265 .. 3023280 - -11.8  -5.06103   ATAAGTTGTAAAAAA              CCCCGC TCCG GCGGGG               TTTTTTGTATCTGCA 100 126
SH02_RS15060 NONE
SH02_RS15055 3018978 .. 3018995 -  -7.7  -4.26202   ACATGCATCAACAAA             GGAAGCC TTTT AGCTTCC              TCGTTGTGCAATAGA  79 41
SH02_RS15050 3017995 .. 3018015 -    -6  -3.37487   TTAGATCCTGAAACA            CGCCACCG TTATC CGGCGGAG            TTCTCTGGTGGTCAG  56 344
SH02_RS14995 3005101 .. 3005122 -  -2.9  -2.71712   CGCCGGGCTGGAAAT           CCCGACGAT GTTG ATTGCCGGA            TATTTCGCCAAACGT  41 385
SH02_RS14985 NONE
        fruK NONE
SH02_RS14975 3000118 .. 3000150 - -14.3  -3.72576   TTTGCGCTCATCAAA      TGTTACAGGACAGGA AAT TTCTGCCCTGTAACA      CACCTTTTATTACGC 100 35
SH02_RS14970 NONE
SH02_RS14965 2997803 .. 2997820 - -10.5  -3.54424   CTTCATGCCGGTAAA             CCCGGCG TCAG CGCCAGG              TTTTGGTATGCTTGA  80 75
SH02_RS14960 2996032 .. 2996054 -  -4.1  -3.57808   GTTAATCGATAAAGA          CCATGAACCG CGTG CGGTGCA-GG           CTATTGAAGAGTGTT  53 497
        rihB 2994639 .. 2994674 - -11.8  -3.96148   TCTGCCCATCAGAAA    TAGCCAGGCCTGCATC TTGC GATACCGGCCCGGCTT     GTTATCAACACTTAA 100 37
SH02_RS14945 2993233 .. 2993274 -    -8  -3.63569   CCAATGGTGTAACAA TGT-TGCCGGATGCGACGC TTAAC GCGTCTTATCCGGCCTACA AATCAGGCAATTTCA  70 87
SH02_RS14925 NONE
SH02_RS14920 2987463 .. 2987482 - -13.6  -4.75776   AATGGAATTGAAAAA            GCCCTCTC GGTT GAGAGGGC             TTAGCAAGGAAGGGA 100 47
SH02_RS14915 2985190 .. 2985212 -  -3.3  -3.76952   TTTACTGAAGTGAAA          GTCCGCCCGG TTCG CCGGGCAT-C           TTCTCATCAGAAGCG  53 32
        folE NONE
SH02_RS14895 NONE
SH02_RS14885 2980968 .. 2980979 -  -4.4  -4.08767   GTTACCTCGGCAAAA                GTGA TTAT TCAC                 TGTTACATACGGGTT  61 115
SH02_RS14880 2979760 .. 2979782 - -14.9  -3.88232   TTGGCCATACAATAA           GGGCGCAGT AATAG ACTGCGCCC           AATCAGTCTTATTTC 100 34
SH02_RS14875 2978067 .. 2978080 -  -2.3  -3.05384   TTGCCCGGCATCCAA               CGCCA TTCA TGGCC                ATATCAATGATTTTC  42 158
SH02_RS14870 2977448 .. 2977473 -  -6.1  -3.39772   TTAAAGGTGCAAAGA         CGCAAGACGCA GAAT TTCGTTTTGCG          TTGTTGTTTTTGTAT  59 111
        mglC 2976174 .. 2976207 -  -8.9  -3.10533   TTGTAAAACCAGAGA     CGCATCCGGCA TTTGGTTCCTGT CGCCGGATGCG      GCTTGAACGCCTTAT  69 225
SH02_RS14825 2968835 .. 2968874 -   -20  -2.71364   TCACTGGCGCAAGGA  GCGCGCAGGGGGCGGC CAATCGCC GCCGCCCCCTGCACCC   CCGGGCTCTGGCGAA 100 253
SH02_RS14815 NONE
SH02_RS14810 2966025 .. 2966039 -  -5.6  -5.06816   ACGCGGGAAGAAAAA               GCCGGA TCA TCAGGC               GTAAAACCATTGCCC  82 159
SH02_RS14800 2964661 .. 2964694 - -14.7  -2.84527   GAATCGTGAGGAAAT     GCTGCATTGCTGACA TTTA CGCCAGCAATGCAAC      GTCAAAGAACTTTCT 100 39
        pbpG 2963568 .. 2963596 -  -7.6  -4.74801   GAAGTGGAGTAAAAA       TTACGGATGGCAGA GTA TC-GCCATCCG-AA       TTCACTTAATCGTTC  91 31
SH02_RS14785 2959326 .. 2959344 - -12.4  -3.86015   TATCCGGCCTACAAA             GGGCGCAA ACG TCGCGCCC             TTACTAAAGCATTAC 100 37
SH02_RS14780 NONE
SH02_RS14775 NONE
SH02_RS14770 NONE
SH02_RS14765 2955211 .. 2955226 -  -3.2  -3.27923   GCCCAACAGCAGCAA              CTCACC AGTT GGCAAG               AACAAGGCCATGATA  47 208
SH02_RS14750 NONE
SH02_RS14745 2951890 .. 2951900 -  -3.2  -4.68593   TTGATGAGGCAAAAA                 GCCA TTT TAGC                 AGTCTTTTACAGGCC  65 32
SH02_RS14740 2950982 .. 2951008 -    -8  -4.29073   GAAGAATCGAAGAAA         TTCAGCGCCAAT CTG AACGGCACTGAA         ATTGCCATTACCTAT  76 407
SH02_RS14685 2932661 .. 2932693 -  -9.9  -3.80855   TGCGGCAAAAACTAA      TACACCGCATCAATG TAA CATCTCTGCGGTGTA      TGAAGAATAACCAGA  84 55
SH02_RS14680 2932117 .. 2932146 - -16.7   -5.5353   GATATCAATAAAAAA       GCCGAAATCATTT ATAT AAATGATTTCGGC        TTTCTAAATGCAATT 100 58
SH02_RS14670 2931287 .. 2931307 - -13.3  -4.54727   CCTCTTAAATTAAAA            GGCCGCCAT GGG ATAGCGGCC            ATGTTTATTACCTGG 100 62
SH02_RS14665 2930576 .. 2930588 -  -3.3  -3.07895   GTCATTCTCAACATA                GGCAG CTC CTGCA                ATTAAATTTTGTCAC  46 27
SH02_RS14660 NONE
SH02_RS14655 2926968 .. 2926988 - -11.1  -5.42259   TCATCGCTAAAAAAA            GCCCCCTCA TCA TGAGGGGGA            AATGCAGACACCTTG 100 81
SH02_RS14640 2924998 .. 2925009 -  -5.8  -2.72013   ACGTGAAGAAGCAAT                GACC TGGT GGTC                 CGTGACTTCCCTACG  52 204
SH02_RS14635 NONE
SH02_RS14630 2923374 .. 2923388 -  -3.5  -2.66008   AAAGCAGCTATAGTA               CGGTG CTCAC CACCA               GGCGTGGAAGTGGTG  44 17
SH02_RS14625 NONE
SH02_RS14620 NONE
SH02_RS14600 2916992 .. 2917013 - -13.7  -5.58209   TGAAAGGCAAAAAAA           CGGCCTCCC GATA GGGAAGCCG            TAGCAAAGTGCGCGT 100 188
        gatY 2916004 .. 2916025 -    -8  -2.71712   TTTTCCTTGTTAAAT           GGCAGGTGC GTTAT GC-CCTGCC           CTCGCAGCCACAATC  60 14
SH02_RS14590 NONE
SH02_RS14585 NONE
SH02_RS14580 NONE
SH02_RS14575 2912590 .. 2912600 -    -4  -3.26405   CTCAGGTAAAAATTA                 TTCT GCG AGAA                 CGACTTTCTCTTGTT  51 12
SH02_RS14570 2911470 .. 2911494 - -13.5  -3.21276   CTGTTTTGCACAATA          CCGGGCCAGCA TCA CGCTGGCCCGC          GGTTTCAGGGAATGA 100 30
SH02_RS14565 2911049 .. 2911059 -  -3.2  -4.24123   GGAACAATTTGAAAA                 CAAG AAC CTCG                 CTTAGGCCTGTGTCC  58 60
SH02_RS14550 2909308 .. 2909352 -   -13  -3.39595   TTGAACCAGGGAGAA TCCGTAATGCCGGATGCGGTG TAAA CACCTTATCCGGCA-TACAGA ACAATACTACACCGT 100 32
SH02_RS14540 NONE
SH02_RS14535 2906937 .. 2906954 - -12.7  -5.29782   CACATCGACAAAAAA             GCCCCTC GACT GAGGGGC              TTCCTGTTTCTAATT 100 472
SH02_RS14485 2892126 .. 2892147 -  -8.7   -2.7035   TTGATGCATAGACCA           GACGCCAGC TCAC ACTGACGTC            CAGCCTTTTGGCGCT  66 13
SH02_RS14480 2891339 .. 2891368 - -12.3  -2.73243   ATTTATTGTTTAAAC       TGGCGGTTGAA TTGTTGTC TTCAACCGCCA        TGAGAAACTCACTCT  88 34
SH02_RS14470 2888272 .. 2888298 -  -8.6  -2.70932   TCGTCTGCTTAACGA         TCTGGTACGCGA TGC CCGCGAACCGGA         AAAAGTGGCCCTGTT  60 432
SH02_RS14460 NONE
SH02_RS14455 2886329 .. 2886340 -  -3.6  -3.30124   CCCCAGGCCGGATAA                GGCG CTCG CACC                 GCATCCGGCGACCAA  49 43
SH02_RS14445 NONE
SH02_RS14440 NONE
SH02_RS14435 2878972 .. 2878984 -  -4.1  -4.72272   CCGCTGGATGAAAAA                CGTGA ATA TCACA                CCATTGCCGGGCTGT  70 466
SH02_RS14425 NONE
SH02_RS14420 NONE
SH02_RS14415 NONE
SH02_RS14410 NONE
SH02_RS14405 NONE
SH02_RS14400 NONE
        wcaD NONE
SH02_RS14390 NONE
SH02_RS14385 NONE
SH02_RS14380 NONE
SH02_RS14375 NONE
SH02_RS14370 2865416 .. 2865428 -  -6.2  -2.58861   CAGTATTTTCATAAT                CCGG GTACT CCGG                TACGCTTCTCAGCGA  54 6
SH02_RS14365 NONE
        cpsB NONE
SH02_RS14355 2861268 .. 2861296 -  -2.4  -3.14878   TGGGGTAAGGGAAGA        TCCGACATTACT CGTTC AGCAACGTCAGC        AGAGTTCGCGTTCGC  43 4
SH02_RS14350 NONE
SH02_RS14345 2858201 .. 2858247 - -15.1  -2.62463   CGTAGGACGGATAAG GCGTTCACGCCGCATCCGGCA TTCAG TGCCTGATGCGACGCTGACGC GTCTTATCAGGCCTA 100 124
SH02_RS14340 NONE
SH02_RS14335 2855580 .. 2855592 -  -5.5  -3.85698   GTTCTCCTCTATAAA                GCCTG CAG CAAGC                TGGCGAGTTCTCGAT  61 6
        wcaM NONE
SH02_RS14325 2853005 .. 2853060 - -18.7  -4.52857   ATGGTTTATATAAAA CAACGGCAG-GAAGATTCGCAACAAA TTACT TTTGCTGCGAATTTTCACTGCCGTTA TAATTTTCTTATCAA 100 65
SH02_RS14320 NONE
SH02_RS14315 2850708 .. 2850732 -  -2.2  -2.52543   ATTCCTTTTAATTCA          TCTTGCTC CACCATCAC GAACAAGA          TGCAAAAACTATTAA  39 37
SH02_RS14310 NONE
SH02_RS14305 NONE
SH02_RS14300 NONE
SH02_RS14295 NONE
SH02_RS14290 NONE
SH02_RS14285 NONE
SH02_RS14280 NONE
SH02_RS14275 NONE
SH02_RS14270 NONE
SH02_RS14265 2841139 .. 2841153 -  -2.8    -4.323   GCTAAATATCTAAAA               GTACTT TTT AAGTGC               CATCTGAAGGCTTTT  59 434
SH02_RS14260 2839479 .. 2839501 - -11.2  -5.75945   ATTTGGCAAAAAAAA           GCCCGGTGCA ATA TACGCCGGGC           CTCAATTTTATTGTT 100 53
SH02_RS14255 2838083 .. 2838103 -  -8.3  -4.09554   AGTAACAAAAGACAA            TCAGGGC GTAAATA GCCCTGA            TAACAAGATGTTAGT  79 36
SH02_RS14250 2836941 .. 2836966 - -11.1  -5.41143   CATCCGGCAAAAAAA         CGGGCAAGGTG TCAC CACCCTGCCCT          TTTTCTTTAAAACCG 100 47
SH02_RS14205 NONE
SH02_RS14200 2828892 .. 2828908 -  -8.1  -3.53184   TATCAAAACTGACAA              TTCATTC TAT GAATGAA              TCTGTTCAATAATGA  68 31
SH02_RS14195 2827965 .. 2827988 -    -3  -2.87344   CAGTGGTTTCATACA          CGCCCCCTTGC AGT GCATGCGG-CG          TCCTGCTGGCGTGAT  43 44
SH02_RS14190 2826923 .. 2826943 -    -9  -4.72473   TGAAGCAAAAAATAA            CCGACGCT GATGA AACGTCGG            TTTTTAGTCATTTTT 100 114
SH02_RS14185 2825359 .. 2825386 - -12.8  -6.04419   AAAAGAATAAAAAAA        CCGGAGCCAAAT GTTC ATTCGACTCCGG         TTTATTATTAGAAAA 100 46
SH02_RS14180 NONE
SH02_RS14175 2823478 .. 2823493 -  -3.2  -4.08064   AATTCTGCGTGAAAA              TCCGCA AGTG CGCGAA               AAAGTGGTGGCGATA  58 461
SH02_RS14165 2821050 .. 2821065 -  -3.2  -2.80113   GATTATGCGAGCAGA              CTCGCA CTCC TGCCAG               TCTGCTGCAAAAGAA  43 44
SH02_RS14160 2820379 .. 2820401 -  -6.3  -3.92373   TATCCGACGGACAAA           CCGGGAA CAGTGTAAT TTCCCGG           CAGGAGCGAAAAAAT  67 116
SH02_RS14155 2819220 .. 2819234 -  -2.8  -2.78495   GCAGCAGCAAGATGA               TTCTGA AGT TCAGGA               ATTATTTGCGCAAGG  42 27
SH02_RS14150 2818692 .. 2818722 -   -17  -2.91042   GATAAGAATCAATGA       GCAATGAGGGTTGC CGG GCAACCCTCATTGA       ATAAAACGGGAATTA 100 38
SH02_RS14090 NONE
SH02_RS14085 2808448 .. 2808464 -  -6.5   -3.4409   AACAAAAATCAGCAA              CGAAGAG ACG CTCGTCG              TGACCACGAATCGTT  61 216
SH02_RS14080 2806995 .. 2807007 -  -3.3  -3.22476   ATGACTCATGATGAA                CCCTG TTC CATGG                CTCCAGATGACAAAC  46 149
SH02_RS14075 2805515 .. 2805525 -  -3.2  -3.97511   CATTGAACAGAACAA                 TGGA TCC CCCA                 CCGTTGCTGACCGCA  56 508
        cobU NONE
        cobS NONE
        cobT 2803052 .. 2803070 -  -3.1  -3.54424   TCCTATGTCGCGAAA             GCTATCC GTTAA GTATAGC             TTTTATCAGACTTTT  49 46
SH02_RS14050 2802050 .. 2802067 - -11.3  -5.22039   GCCAAATTCAAAAAA             GCCTGCT TTCT AGCAGGC              TTTTTGCTTTCTAAT 100 52
SH02_RS14040 NONE
         cbl 2799643 .. 2799659 -  -9.4  -3.07283   CAAATTCCTGAAAAG              CCCGCT TTTAT AGCGGG              ATTTTTGCTATATCT  72 33
SH02_RS14025 2797807 .. 2797818 -  -4.4  -3.35278   TGAACTACAGAGGAA                TCGT GAGA ACGA                 GGCGAATATTAGCGA  51 113
SH02_RS14020 2797639 .. 2797667 -  -9.6   -5.4387   ACAGAAATCAAAAAA        CCCGGTCACTTT TTTAC AAGGTAACCGGG        TAAAAATAATTTTTA 100 88
SH02_RS14000 2791740 .. 2791761 -  -4.3  -3.58533   TTATAATTTCTTAAA           GAGTGTTCC ATTC GGGGCACTC            TTTTTTACATTCCCT  54 243
SH02_RS13980 2782664 .. 2782676 -  -7.7  -3.07307   TAAATGTTTACGCAA                GTGCA CAA TGCAC                CCTTTCCACTATCAA  59 520
SH02_RS13945 NONE
SH02_RS13940 2776028 .. 2776040 -  -4.8  -3.59979   TTGGTTTACCTGAAA                GCCA GGACG TGGC                TGCCGCTTTACAGTG  55 482
SH02_RS13930 2774831 .. 2774869 -  -6.9  -4.16909   ACTTCAACAAAAACA  TGTCCACCTATGTTGATT ACAA AATCAACCT-GCTGGACA   ACGACGATGACTTCT  72 103
SH02_RS13915 NONE
SH02_RS13910 NONE
SH02_RS13905 NONE
SH02_RS13900 NONE
SH02_RS13890 NONE
SH02_RS13885 2767850 .. 2767874 - -16.5  -2.83164   GCAGGCATTAGCACA          CCAGGCCGGAT GTG ATCCGGCCTGA          TGTTAATGATACCCT 100 42
SH02_RS13880 2765829 .. 2765853 -  -8.6  -3.65827   CAATTGTCAGGCAAA         CGCCCA-ACCA CACT TGGCCTGGGCG          ATGGGCCAAACGATG  69 198
SH02_RS13865 2764297 .. 2764330 - -13.9  -3.04248   CAACATGCGCTAACA     CATTCTGACTGGTGG TTTC CCACCAGTCAGGCTG      AATAAGATTACTCTG 100 33
        fliE 2752390 .. 2752405 -    -4  -3.82604   GGATGTAATTAACAA              CAGGTT ACAA AACCTA               CACCTGCATGCTCAT  57 23
SH02_RS13780 NONE
SH02_RS13775 2750940 .. 2750950 -  -5.4   -2.7898   TTTAATATTTAATTA                 TGAG TTC CTCA                 CCATCTATTACATAC  50 1
SH02_RS13750 2747352 .. 2747372 -   -14  -2.66272   GGTGATTTAAATTCA            TCCCCGGC GGCAA GCCGGGGA            GATTTCATTACGGCA  95 33
SH02_RS13725 2741622 .. 2741638 - -15.1  -5.64274   CCAGGCAGAAAAAAA              CCCCGCC GGT GGCGGGG              AAGCACGTTGCTGAC 100 200
        fliA NONE
SH02_RS13715 NONE
SH02_RS13710 2739250 .. 2739267 -  -8.4  -5.63517   CGCGTAAATAAAAAA             GGCGCT AGTGAA AGCGCC              CTTTTTTGTCATTAT 100 46
SH02_RS13705 NONE
SH02_RS13700 NONE
SH02_RS13695 2736576 .. 2736593 -  -3.5  -3.38272   GAGTATCATTTATAA             TGATAAT TCAA ACTATCA              CATAAATAAGATTTA  49 197
SH02_RS13690 2735753 .. 2735779 - -12.3  -4.70583   GTCAGTAATATAAAA         CCGGCTGATAG CGTGC CTTTCAGCCGG         TTTTTGCATCTGGCA 100 59
        sirA NONE
        uvrC NONE
SH02_RS13665 2731969 .. 2731981 -  -4.1  -3.60431   AAAATTACGCCGAAA                CGATC ACT GATCA                AGCAAATCTGCACGC  54 16
SH02_RS13660 NONE
SH02_RS13655 NONE
SH02_RS13650 2731458 .. 2731471 -  -8.1  -5.64274   GCAGGCACAAAAAAA               CCACC CGAA GGTGG                TTTCACGACACTGCT 100 72
SH02_RS13645 2730612 .. 2730653 -  -5.1  -2.75819   CAGATAGCCTCAAAT TCCTTATTGGGTGCCAG AATTAACG CTGACACCCAATTTGGC  CTCTTAATGCAGGCA  50 29
SH02_RS13635 2728843 .. 2728853 -  -6.8  -3.61988   TTATTGATAAATTAA                 GCCT GGC AGGC                 AAAAGCGGCGAAGGT  63 126
SH02_RS13615 2727177 .. 2727204 - -13.5  -3.86822   GAAGGTTTTGAGAAA        CCGCTGCCTCA TCTGTT TGAAGCAGCGG         TTTTTTTAATGGGAT 100 31
SH02_RS13605 NONE
        araG 2723266 .. 2723276 -  -6.8  -3.07816   TCCTTACTCAGGCAA                 CAGC CTG GCTG                 ACTTTAGGCATCGCA  59 7
        araH 2722195 .. 2722216 - -11.6  -3.49048   TTGCAACGAAGAACA           GCCAACCG TTATGG CGGTTGGC            TATGGTGGGAAAAAA  89 66
SH02_RS13590 NONE
SH02_RS13585 2719522 .. 2719535 -  -2.3  -4.08692   CAACTGCTGGCAAAA               GCGGT ATCT ATCGC                CAGGCCAGTAAAGGG  56 381
SH02_RS13575 NONE
SH02_RS13570 2717695 .. 2717718 - -12.5  -5.75342   TTGGGGCAAAAAAAA          GCAGCGGTA CGTCGT TACCGCTGC           TGGAATGTTGCGCCT 100 52
SH02_RS13565 NONE
        motB NONE
SH02_RS13555 NONE
SH02_RS13550 2713266 .. 2713286 -  -8.3  -5.67283   AATTGAAATAAAAAA            CCCGATG CGCAGAT CATCGGG            TTCATTTCAATTGAG 100 54
SH02_RS13545 NONE
SH02_RS13540 2709835 .. 2709864 -  -2.1  -2.90763   CCCACAGGGCAGAGA       TGAAGTCATAGCG CCTT CTCAATCACTTCA        GGATACCACTGGCGC  42 23
SH02_RS13535 NONE
SH02_RS13530 NONE
SH02_RS13525 NONE
SH02_RS13520 2706830 .. 2706865 - -13.4  -2.78596   CATCGCCTTATCAGA    CCGCCTGATATGACGT GGTC ACGCCACATCAGGCAA     TACAAATCAAAATCC  93 32
        flhB NONE
SH02_RS13510 NONE
SH02_RS13505 2702682 .. 2702692 -  -6.8  -3.92996   CGTTATATAGAACAA                 GTGC CAC GCAC                 AGGTGTAAAAAAACC  68 392
SH02_RS13490 NONE
SH02_RS13485 2698927 .. 2698951 -   -10  -5.64274   TCAGGGATAAAAAAA          GGCCCCTG TTGAAATTG CAGGGGCC          TGGTACGAGCAAGCA 100 73
SH02_RS13480 2697505 .. 2697523 -    -3  -3.14132   TTCCTCCCTGATCAA             CGAGGATC ACT GTTTCTCG             GTAATATCTTTGGCG  46 13
SH02_RS13475 2694729 .. 2694741 -  -9.1  -2.87132   GTGGTTTTGTAGATA                TCCGC ATT GCGGA                TGTGAGCGTTACCAC  65 341
SH02_RS13445 2689200 .. 2689215 -  -3.2  -3.05384   GCCGCCTCGATGCAA              CGCGAA TGAT TTCGTG               TATTTGAGTCATATC  44 39
        nudB 2688636 .. 2688647 -    -3  -4.83615   GACCTGCCATAAAAA                TATC TCCA GATA                 GCCCTGCCTGTTCAG  68 37
SH02_RS13435 2687897 .. 2687907 -  -6.8  -2.94218   AGGCCTCATCAGAGA                 GTCG CTG CGAC                 CTCATCAGAGATTTC  58 8
        ruvC 2687301 .. 2687326 - -10.4  -3.61178   CGGAGGGAGTGGAAA         CGCCTCAGCC GGAACT GACCGAGGCG          GTATAACTTAACGCA  82 33
        ruvA NONE
SH02_RS13415 2684770 .. 2684808 - -11.7   -3.0976   GGTAAGACGCGAACA   GCGTCGCATCAGGCA TATTGCCAG TGCCGGATGCGGCGC   GAGCGACCAATCCGA  84 42
        znuA NONE
SH02_RS13395 2680753 .. 2680775 - -10.6  -5.99154   CACCAAATAAAAAAA           GCCGGTAC TGACTGC GTACCGGC           TGCGAATGGATGTTA 100 42
SH02_RS13390 2679574 .. 2679612 - -13.9  -2.81725   ACGGTAGAGTAAGTA  CGTTG-CCGGATGCGGCG AAAA CGCCACATCCGGCCTACA   GTTCAATGATAGTTC  95 114
SH02_RS13375 2676927 .. 2676942 -  -5.4  -4.15565   GCGATTACGGGAAAA              GCGCGCA AAG TGCG-GC              AAAACTGATAAAAAA  65 42
SH02_RS13370 2675213 .. 2675238 - -11.2  -5.80364   AGTGTAATAAAAAAA         GCCTCGTG-GG TGAAT CCGCACGAGGC         CTGAAAGTGTAAAAA 100 105
SH02_RS13365 NONE
SH02_RS13360 2672564 .. 2672584 - -15.5  -4.90296   AAAACGCTACAAAAA            TGCCCGATC CTC GATCGGGCA            TTTTGACTTTTACAG 100 35
SH02_RS13350 NONE
SH02_RS13345 2670465 .. 2670476 -  -3.6  -3.28712   TTCTGGGGCGGACAA                GGCA CTCG CGCC                 GCATCCGCCAACAGT  49 62
SH02_RS13335 2669521 .. 2669535 -   -10  -2.91582   CAGGCTATCCAGAGA               GCGGAA TTA TTCCGC               CAAAGTGCGTTTTTG  73 17
SH02_RS13330 2667076 .. 2667102 -    -5  -3.32844   GGCTGGACGGCAGAA         CAGATGGCCGAT ATC ACCGGACGTCCG         TCGTTGATGACGACC  51 181
SH02_RS13310 NONE
SH02_RS13305 NONE
SH02_RS13300 2663778 .. 2663807 -  -5.1  -4.70879   CTGAAATGTTAAAAA      CCGCC-C-GTTCT GGTGAA AGAACTGAGGCGG       TTTTTTTATTGGAAA  73 62
SH02_RS13295 2663590 .. 2663616 -  -8.8  -4.16832   TAACAGATAAAAAGA         GACCGAACAC GATTCCT GTATTCGGTC         CAGGGAAATGGCTCT  83 82
SH02_RS13290 2662507 .. 2662523 -    -5  -4.44608   CTGATCCAAAAAGAA              CCCGTC GGCAT GGCGGG              TTATTTGTCCTGGTT  68 294
SH02_RS13260 2656063 .. 2656082 -  -6.4   -3.1552   GCGCAGGCATGAACA            GGCGTCAT TATA ATGACGCT             ATCAGTAAATGCTAC  57 53
SH02_RS13255 NONE
SH02_RS13250 2653217 .. 2653240 -   -14  -5.00616   GTCGCTGTTAAAAAA          TCAGGCACAA TTTC TTGTGCCTGA           TTGATATTACTTGAC 100 32
SH02_RS13245 2652134 .. 2652153 - -10.7    -5.626   CAGGGCATAAAAAAA            GCGCGTC GATCAG GACGCGC             TTTTTAGTATTTACT 100 46
SH02_RS13235 2649747 .. 2649777 -  -6.9  -4.44046   CTCATGCTAAATAAA       GAACCTGTCTG TTTGATATT CCGACAGGTTC       TTACTCTCATCAGAA  76 35
SH02_RS13225 2649100 .. 2649114 -  -2.8  -3.37655   GTGCTGAAAAAATGA               TATCAC CAC GGGATA               AACTGGTTAATGGCA  46 13
SH02_RS13220 2648695 .. 2648726 -  -9.6  -3.25729   TATAATCAGGATGAA      TTGAGTAAC-CCTTC AAC GACGGGGTTACTCAA      GATTGAGGAAGGATT  74 39
SH02_RS13210 NONE
SH02_RS13205 2647638 .. 2647656 -  -8.1  -4.85177   AAAGCATAGTAAAAA             GCCTCGC ATTCG ACGAGGC             TTTATAGCGAGATTG  91 74
        rrmA 2646461 .. 2646477 -  -7.9  -2.55437   GATGAAGATGAAGAG              CCGCGCC GTC GACACGG              TTTCTGGCTACTGGT  56 278
SH02_RS13165 NONE
SH02_RS13160 2640433 .. 2640467 - -14.9  -3.54424   CGTGATTTTCCCAAA     TGGCTGGCGGGCAGC CAACC GCCGCCCGCCCGGCA     TAATGGACATATCAC 100 66
SH02_RS13135 2634709 .. 2634727 -  -3.2  -3.17723   GCACGGCGAAGGGAA             TCTTTAAA TAT TTAAAAGA             ACTGGGAGTACCCGC  45 329
SH02_RS13120 NONE
SH02_RS13115 NONE
SH02_RS13110 2630384 .. 2630408 - -14.4  -2.66106   TACCGTAAGAATGCA          GAAACAGCGG ACCAG CCGCTGTTTC          TTTTTCTTTAAAAAC 100 47
SH02_RS13105 2628503 .. 2628519 - -10.8  -5.75342   GGGCGTCAAAAAAAA              CGCCGG ATTAA CCGGCG              TCTGACGACTGACTT 100 46
SH02_RS13100 2627162 .. 2627172 -  -3.2  -3.57561   GCGGAACCTGCGAAA                 CAGC AAT ACTG                 GAAGGTGAAGCTGAC  51 196
SH02_RS13075 2621323 .. 2621338 -  -7.6  -4.64846   TTAGAAAGGAGAAAA              TCAGGT TTTA ACCTGA               TATCAACCCGATAAT  86 52
SH02_RS13070 2620568 .. 2620578 -  -2.4  -2.96395   AGGGAGGATTATAGA                 TGGG AAG CCCG                 CGACAACGCGGGCTG  42 47
SH02_RS13065 NONE
SH02_RS13060 2619892 .. 2619906 -    -5  -2.82529   GATAATTACCAACCA               CAAACA TCA TGTTCG               TTTTCCGTGTCATAA  49 1
SH02_RS13055 2619447 .. 2619472 - -13.4  -3.08056   ACCTCTAAAAAATAG         CAAAGGCTGC CTGTGT GCAGCCTTTG          TGCAATTTAAGCGTT 100 39
SH02_RS13040 2617684 .. 2617708 -  -6.5   -5.1675   CTACTCAGCAAAAAA         CACCA-CGCA GAACCA TGCGCTGGTG          CTGGCCGACTGGCTA  86 74
SH02_RS13025 2614795 .. 2614806 -    -3  -2.80464   GCAGCAAGCGTAAAG                TAAG CAGG CTTA                 TTATTTTTTGGCAAG  43 453
SH02_RS13015 2614071 .. 2614087 -  -2.1  -3.64236   ACTGAAATGGCTAAA              GGAAGCG TGA CGCATCA              GCGGTTAATCGCTTT  49 495
SH02_RS12985 2606153 .. 2606169 - -13.7   -4.2803   CACCGTAATGCAAAA              CAGGGCG TGA CGCCCTG              TTTTTATGCACAAAA 100 61
SH02_RS12980 2605218 .. 2605265 - -19.4  -2.56046   CGAAACGTTAATTTA CGTTAATGTTGTGTGCCGGGTGC AAT GCATCCGGCACACAACATCA-CA CCATATCCAGCGCAG 100 21
SH02_RS12965 NONE
SH02_RS12960 2601889 .. 2601922 - -12.7  -2.95341   AGGTCAACATTAAAT     CTGTAAAACACAGAT AATG ATCTGCGTTTTACAA      CTCAGATCACAATTA  93 284
SH02_RS12955 NONE
SH02_RS12950 NONE
SH02_RS12945 NONE
SH02_RS12940 NONE
SH02_RS12935 NONE
SH02_RS12930 2595364 .. 2595383 -  -2.2  -2.85351   TCTTTTTACATCACA            TTAGCGCGA TTA TCGCA-TAA            CCGATGTTTACTTTC  41 112
SH02_RS12925 2594492 .. 2594513 - -10.9  -2.57261   TAAAAAGGTAGCAAT           TGCGGCAAA TTCA CTTGCCGCA            TCTTTATCATCATTT  76 87
SH02_RS12920 2592743 .. 2592755 -  -4.7  -3.28712   TGCCTTTTTTGATAA                CGGCC GTC GGCAG                AAAACCTCTCTCGAT  51 370
SH02_RS12895 NONE
SH02_RS12890 NONE
SH02_RS12885 NONE
SH02_RS12880 2585407 .. 2585437 -    -7  -5.81412   TCCATGCAAAAAAAA       TATCCAACGAAT TTTCTTG ATCCGCTGGATA       TTTCAGAATATGACT 100 66
SH02_RS12875 2584203 .. 2584228 -  -8.3   -2.7644   ATTTAAGTTGTAAAT         GCCTGAT-GGCG CTA CGCTTATCAGGC         CTACAAATGGGCACA  64 107
SH02_RS12865 2582100 .. 2582116 -  -3.6  -2.84051   CGAGCCGGATGAAAG              TCAGCG GCAGG CGCTGG              TGCGTGAGTTACGCG  45 251
SH02_RS12855 2581211 .. 2581226 -  -4.6  -5.09895   CAGCGATCCAAAAAA              TCCGGT AGCA ACCGGT               GAACGCGGCCCGGAC  81 61
SH02_RS12805 NONE
SH02_RS12800 NONE
        astD NONE
SH02_RS12790 NONE
SH02_RS12785 2566404 .. 2566429 - -16.3   -3.2827   AAGAAAGCAACTTAA         TACCCGCAGAA TGAT TTCTGCGGGTA          AGTATTAGCTTATTT 100 30
SH02_RS12780 2565545 .. 2565595 - -19.8  -5.26907   GAAGAGAAAAGAAAA CCGCCGATCCTGTCCACCGCATTA CTG CAAGGTAGTGGACAAGACCGGCGG TCTTAAGTTTTTTGG 100 49
SH02_RS12775 2564597 .. 2564611 -  -5.6  -3.22774   GAGAGCCATGAGGAA               CATGCG CTA CGCTTG               CGCCAGTCTCTGGAG  52 255
SH02_RS12765 2563662 .. 2563678 -    -3  -4.74103   TCTGGAAGGGAAAAA             CGTACCT CAAC AGGT-CG              CCAGAACAATAGAGA  71 80
SH02_RS12755 2562347 .. 2562362 -  -7.5  -5.78622   TCAGGCCAAAAAAAA              CCGGC GCAATG GCCGG               TTTCCGTTGTTACTC 100 60
SH02_RS12750 2561713 .. 2561732 -  -7.9  -4.62904   AAATACCCTTAAAAA            CCGCAAT TTAAAT ATTGCGG             TATTGATTTATGAAA  86 71
SH02_RS12745 NONE
SH02_RS12740 NONE
SH02_RS12735 2559042 .. 2559054 -  -3.3  -4.14627   CCCGGACATAAATAA                TCCAG CAA CAGGA                CAGATATGTGAATTG  58 55
SH02_RS12730 NONE
SH02_RS12725 2556821 .. 2556854 -  -5.9  -3.39895   CTTTGTAGGAATTAA     TCGCCGGATGCAAGG TTCA CGCCGCATCTGGCAA      ACATCCTCACTTACA  57 36
SH02_RS12715 2553870 .. 2553888 - -12.4  -3.06796   TTTCAGGTCATGTAA             CTCCCGGC AAA ACCGGGAG             GTATGTAATCCTTAC  93 37
SH02_RS12710 2552444 .. 2552454 -  -8.2  -3.30619   AACCATTGGTCAGAA                 CGGC TGC GCCG                 GTTTGTATCCGGCAA  65 379
SH02_RS12690 2549153 .. 2549169 - -10.8  -2.64099   TGGGTTGAGGATAAT              GGCCGC TCCGT GCGGCC              TTTTGATTAAATAAA  76 32
SH02_RS12670 2545771 .. 2545795 - -12.1  -3.25317   TGACAAACGAAGACA          GCCAGACCGCA TAA CACGGTCCGGC          AGATAATTTTACATG  89 34
        thrS NONE
SH02_RS12650 2540530 .. 2540557 - -14.2  -4.23707   ACAAAGGCGAACAAA        GCCTGTGAAGCC CGAA GGCTCCACAGAC         AGTGCTACTTGAAGG 100 43
SH02_RS12645 2540263 .. 2540277 -  -2.9  -4.87291   TATTCTAATTAAAAA               GTTAA AAACG TTAAC               GGCTTATGCGTACGG  67 29
        rplT 2539842 .. 2539860 - -10.3  -4.54727   GCGTTGAAACGAAAA             GAGGGAG ACTAG CTCCCTC             TTTCAACTGGCTTAT 100 37
SH02_RS12635 NONE
SH02_RS12630 NONE
        pheT NONE
        ihfA 2535700 .. 2535714 - -12.8  -5.80951   AGTGAAAAGAAAAAA               GGCCGC AGA GCGGCC               TTTTTAGTTAGATCA 100 43
SH02_RS12615 NONE
        btuE NONE
SH02_RS12605 2533280 .. 2533292 -  -2.7  -3.07895   CCGATTTTCAAGATA                CTAAT GAA ATCAG                ATGGTCGAAATCAGC  44 22
SH02_RS12600 2532708 .. 2532734 -   -21  -3.79747   GTATTCAGGAGTAAA         TGGACGGCGATG TAT CATCGCCGTCCA         TTTTTCGACATACTA 100 38
SH02_RS12595 2531718 .. 2531730 -  -3.3  -3.55261   GGGTAACAAAAGACA                GGGTC ATA GATCC                TCCTGTTTGATAGTG  49 82
SH02_RS12590 2529777 .. 2529805 -  -3.9  -3.73402   ATATTTGTCAGCAAA       TCC-GCAATGGC TCTACG GCGATTGCTGGA        ATTATGGCGGAAAGT  56 508
SH02_RS12570 2527631 .. 2527642 -  -2.2  -3.86822   GAACGGTTTGAGAAA                CACA TTTC TGCG                 CATTTATCTTTGCAT  51 29
SH02_RS12565 2525182 .. 2525206 - -16.4  -3.54475   TCGGGGATCACATAA          CCCCGGCGAC TAAAC GCCGCCGGGG          ATTTATTTTATTTCT 100 33
SH02_RS12535 2519814 .. 2519846 -  -6.3  -4.90869   ATGAGCAAGCAAAAA      CAATATATGCCGGAT AAA ATACGGCGTGTATTG      CGGTTATACAACCGC  80 63
SH02_RS12530 2518829 .. 2518869 -  -8.3  -3.16387   ATCAGAACAAATAAT CTGCAGGCGGCGCAGCTT CTTAAC AAACTGCGCCGCCAG-AT  TTATCCAACAAGACT  67 26
SH02_RS12485 NONE
SH02_RS12480 2505626 .. 2505657 - -12.4  -3.31726   CGCTTTTAGACAAGA      CCTGCACAGTATAC CACC GTTTACTGTGCAGA       TAATGACCAAAAGCA  95 70
SH02_RS12475 2505159 .. 2505189 -   -17  -5.05116   TCAGAAATAAGAAAA       CCCTTAAGTCTGTG CGA CACAGGCTTAAGGG       TTTCTACCCCATCCG 100 250
        sufA NONE
SH02_RS12465 NONE
        sufC NONE
SH02_RS12455 NONE
SH02_RS12450 NONE
SH02_RS12445 2499303 .. 2499321 -  -3.9  -3.60627   GCAGGTCAGTGTAAA            CATTGACC ATCC GG-CAATG             TGAGCCAACCGGATG  53 58
SH02_RS12440 2498159 .. 2498177 - -14.6  -4.74103   CTGTGAAGTGAAAAA             TGGCGCAC ATT GTGCGCCA             TTTTTTTTGTCTGCC 100 49
SH02_RS12425 2495379 .. 2495407 -   -14   -3.4945   ACTGAAGCAAGAATA        TCAGGATGAAGC TTACC GCCTCATCCTGA        ATGGTCATTTTACCA 100 30
SH02_RS12420 NONE
SH02_RS12415 NONE
SH02_RS12410 2491555 .. 2491571 -  -5.2  -3.54129   GACATCTCCCTGAAA              TTTCAG GGGTT CTGAAA              CTGCTCTACCTCGAA  57 11
SH02_RS12405 NONE
SH02_RS12400 NONE
SH02_RS12395 2489004 .. 2489021 -  -4.9  -4.62002   AGCAATTACAGAAAA             CAGGGGAT GAA ATCCC-TG             ATGTTGGCGAAGATT  72 231
SH02_RS12370 2485320 .. 2485343 - -13.9  -3.96841   CGCTAATAAAGACAA          GGCGCAACC TTCACG GGTTGCGCC           TGTATTTTTACGCAG 100 33
SH02_RS12360 2483043 .. 2483057 -  -4.2  -3.53224   GAGTGGCTCGCTAAA               GGCTAT TCT ATCGCC               CCCTCTCCGGGGGCG  52 49
SH02_RS12345 2478849 .. 2478861 - -10.5  -3.06796   CGTTATCTGATTGAA                CGCGG TCA CCGCG                AAATCGGCGTCATCC  72 510
SH02_RS12335 2477853 .. 2477887 -    -3  -4.96276   ACAAAAAAATGAAAA     TAACAAAAAGAGAAAA CAC TTTTGCCATTTTGCTA     ACAAACAGGAAGGAG  71 74
SH02_RS12330 2476522 .. 2476539 -  -9.1   -2.5955   AGGTCGGATAAGGCA             CTCGCCG CATC CGGCAAG              ATAAATCGCACGTTG  66 87
SH02_RS12315 2474192 .. 2474219 - -15.7  -3.09116   GGGATAGAGAAAGGA        CTGACGGATGC CCGTTC GCATCCGTCAG         TATTGCAGGACGGAT 100 40
SH02_RS12285 NONE
SH02_RS12280 NONE
SH02_RS12275 2464519 .. 2464542 - -10.2  -2.52516   CCCGTCATCATCAAC          CTGCCGCCCG TGAG CTGGCGGCAA           TTGTCTGGCGGCTGT  65 97
SH02_RS12255 2460828 .. 2460863 - -11.8  -3.90744   CTCCGCGCTAAATAA    GTTTGCGTGTGGTCAG GTTA CTGACCACACGCCCCC     TTCATTTCACCCTTT 100 32
        anmK 2458957 .. 2458970 -  -2.4  -3.63367   CGCGGTAAGAAAAAT               TCAG TTAACT CTGA                TATCACGGGTTAGCG  49 28
SH02_RS12240 NONE
SH02_RS12235 2457812 .. 2457824 -  -3.4  -3.77196   GTACCAGCGATTAAA                GCAA GATTT TTGC                ATCTTTTCAGGGTGC  53 32
SH02_RS12230 2456386 .. 2456415 - -10.7  -4.82901   TTCCCTGTATAAAAA       CCAGGGGGAGTGA TTTC TCACTCCCCCTTT        CCACTTAATGCATTA 100 38
SH02_RS12225 2455137 .. 2455147 -  -5.4  -4.36914   TTTCCCGCTATAAAA                 CCAT CGA ATGG                 CTGAATTACATCGCC  70 384
SH02_RS12155 2443715 .. 2443748 - -15.5  -3.33696   GTCGCCGCGAAGTAA     CAAAATGGATGGTGC AAAT GCACCATCCATTTTT      CATGCAAGGCACAAA 100 25
SH02_RS12135 2438554 .. 2438570 -  -5.1   -5.3104   TCAGTAAAAATAAAA              GGCAC CGCCTGT GTGCC              ACATTTTTTATCATT  84 87
SH02_RS12130 2437606 .. 2437617 -  -5.8  -3.01924   CATTGCTGTTGAATA                GTGC GAAG GCAC                 ACTCTATTCGTATAC  54 161
SH02_RS12125 2436773 .. 2436788 -  -5.4  -3.72078   CCATAAAATAAGCAA              CCGAAC GTTC GTTCGA               GCGTATTGGGAACGA  59 179
SH02_RS12120 NONE
SH02_RS12115 NONE
SH02_RS12110 2432035 .. 2432058 - -13.9  -3.72051   GTCAACAATCTGAAA          CGCCGGAGA TTTTTC TCTCCGGCG           TTATTTTTTACTTCA 100 33
SH02_RS12095 2427189 .. 2427204 - -11.8  -5.47218   TGCCATGTAAAAAAA              CCGCCC CGAA GGGCGG               CTCTGTTTATTTCAC 100 32
        fumC 2425575 .. 2425604 -  -4.3  -3.55444   TGGTGAGTTGTTAAA       TTACGATGCCG-AC AAT GTGCAGCACCGTTA       TAAACCTCAGGCGCA  53 86
SH02_RS12070 2422092 .. 2422112 -  -8.3  -4.06419   CCTGGCGAGAAAGAA            GTGATCGAC CTG GTCGATTAC            TTACTTACCAGTTGC  77 88
        pntA NONE
        pntB 2415424 .. 2415449 - -13.3  -3.69068   CGATCTCAATAAAGA         GTGACGGCCTC AGCA GAGGCCGTCAG          GGTTACAGAGCTTTC 100 28
SH02_RS12035 NONE
SH02_RS12030 2413270 .. 2413293 - -15.3  -3.65722   AAAATAATGTTCAAA          CGCTGCCCG ACAGCG CGGGCAGCG           TCTTCATCAGGCAAG 100 32
SH02_RS12005 2409192 .. 2409204 -    -2  -2.63596   CCTCACCTGAGAGCA                TTCA GCAGA TGAA                TACGAAAGTTACGCG  40 0
SH02_RS12000 2407747 .. 2407767 -  -3.3  -3.16345   AACCAGGAAAATAAT            TAACCTTGA AAG TCTAAGTTA            TGCTTTCCTGGCCCA  46 82
SH02_RS11995 2406936 .. 2406960 - -15.8  -2.93585   TGATATGTGAAATGA          CCGGGGAGTA TCAGC TACTCCCCGG          TTTATTGATTGCCTG  95 69
SH02_RS11955 2396932 .. 2396954 -  -8.4  -2.89565   AATTTCAGATAATTA           TCTCCCCGGA GTA TCAGGGGAAA           GGTCTGGCAACCCGT  61 298
SH02_RS11940 2395727 .. 2395740 -  -2.3  -3.99153   TGATCACAAAAAAAG               GCGTA TATT TGCGC                TGTGAATGGTTGACA  53 112
SH02_RS11935 NONE
SH02_RS11930 2392946 .. 2392965 -  -4.2    -4.431   GACGCAGCGATAAAA            CG-TGCCGG ACT CCGCCATCG            AAAATCATATCAGTC  66 436
SH02_RS11915 2390616 .. 2390638 -  -9.9  -2.86049   CAACAAGGGAAGAAG          GCGCTGTGGC TGTA GCCACAGC-C           ATTGAAGCTGGCGAC  72 164
SH02_RS11900 2389171 .. 2389196 -  -7.5  -4.24963   CACAATCATGGAAAA         GGCTTACGAAG AATA CTTCGAAGGCC          TTGCCGAAGGCGAAG  75 354
SH02_RS11880 NONE
SH02_RS11875 2387445 .. 2387482 -  -4.2  -3.24447   GACAGTCCACAAAAC   TGCCAACTTCCGCT TCTTGCTCTT AGCGGACATTAGCA    TAGGCTATTTACCAT  51 362
SH02_RS11865 NONE
SH02_RS11860 2385783 .. 2385796 -  -2.4   -2.9732   TGTCAACGCAAAGCA               GAAG TGTCAC CTTC                GGTGCGAAACAGAGA  42 55
SH02_RS11855 2385515 .. 2385528 -  -9.5  -5.77734   AAATAAAAACAAAAA               CCCGC CGAA GCGGG                TTAAGTGCGGGTGCG 100 96
SH02_RS11850 NONE
SH02_RS11845 NONE
SH02_RS11840 NONE
SH02_RS11835 2382836 .. 2382867 - -12.4  -3.64822   ATTGCCCCATTTAAA      GCACAAAACCCGCT CATC AGCGGGTTTTCTAC       TTTTTCTTAACGTCG 100 127
SH02_RS11825 2381521 .. 2381534 -  -9.5  -5.60689   GCAGATAATAAAAAA               CCCGC CTGA GCGGG                TTTGAGATTGTGGTG 100 310
SH02_RS11820 NONE
SH02_RS11815 NONE
SH02_RS11810 NONE
SH02_RS11805 2379278 .. 2379288 -    -4  -4.03413   ACTGCTTCAGATAAA                 TTTG TAA CAAA                 CCAGAACACCATTAA  59 247
SH02_RS11800 2378714 .. 2378727 -  -8.1  -5.31059   ACACCAAGCAAAAAA               GCTCC CGAA GGAGC                CTTCATTTTCACTTT 100 233
SH02_RS11795 2378340 .. 2378350 -  -5.4  -3.95836   ACGTGTAAAAGATAA                 GATG AAA CATC                 GCAATAATCAACATA  63 109
SH02_RS11790 2378044 .. 2378059 -  -6.8  -4.95302   TCAAATATAACAAAA              CCCCGT AAAA ACGAGG               TTTATGGATAAATTT  86 55
SH02_RS11775 NONE
SH02_RS11770 NONE
SH02_RS11765 2374700 .. 2374712 -  -3.4  -4.78477   ACATATAAAAAATAA                TCTC GGTGT GAGA                TGCTTTACGTCTTCC  68 103
SH02_RS11750 2371450 .. 2371473 -  -9.6  -5.16841   TTATATGAATAAAAA          TCCCCTCTCC GGTA AGAGAAGGGA           TTAAGGGTTTACAGA 100 34
SH02_RS11745 2369816 .. 2369826 -  -6.8  -3.73224   TGACCGCTGAGCAAA                 TCCG CCG CGGA                 AAAACCGTAGTTGTT  66 132
SH02_RS11725 2365775 .. 2365803 - -13.2  -2.83271   TTACTGCTATAACCA        GGCTGGCCTG GCGATATCT CAGGCCAGCC        ATTGGTGGTGTTTAT  91 37
SH02_RS11715 2364544 .. 2364573 -  -8.6  -2.50779   AGCATAACCCAATAC       CCTAATGGCCCA GTAGTT CAGGCCATCAGG        CTAATTTATTTTTAT  63 37
SH02_RS11710 2363305 .. 2363322 - -10.5  -5.76949   GACGGCGAAAAAAAA             CCGCCAG TAAA CCGGCGG              TGAATGCTTGCATGG 100 143
SH02_RS11695 2360446 .. 2360458 -  -7.7  -3.08522   CAGCTAGTTGAAAAC                GTGAC AAC GTCAC                TGAGGCAATCATGAA  63 285
SH02_RS11675 2358705 .. 2358718 -  -9.5   -3.6707   ACGCAATAGTTGAAA               GGCCC ATTC GGGCC                TTTTTTAATGGTACG  78 30
SH02_RS11655 NONE
SH02_RS11650 NONE
SH02_RS11645 NONE
SH02_RS11640 2351313 .. 2351329 -  -5.9  -2.52896   TCATGGTTTAATCGA              GGAAAAA CGC CTTTTCC              TGGATCATAAAGTGG  52 83
SH02_RS11635 2349674 .. 2349689 - -10.4  -4.56978   TGGTGAAATAAGAAA              CCCGGT CGAA ACCGGG               TTCAGAAGTAACGGT 100 45
SH02_RS11625 2348506 .. 2348519 -  -6.7  -3.03771   TCAGATGCTGGAAGA               GCAGT ATCC ACTGC                AAGAGAACGGACAGA  56 94
SH02_RS11585 NONE
SH02_RS11580 2339058 .. 2339091 -  -6.1  -4.72333   AACTATACTCAAAAA     CTAACAGCCACGGTCA TCA TGAT-GTGGCTGTCAA     TGAAACTATAACCCA  77 31
SH02_RS11575 NONE
SH02_RS11570 2333111 .. 2333135 - -14.3  -3.36452   AGTCGGCAATATTAA          GCCGCATGCCA TCT CGACATGCGGC          TTATACGGTTTACCA 100 35
SH02_RS11565 NONE
SH02_RS11560 2331049 .. 2331060 -  -5.8  -2.62158   TTAAATAAGTAACAG                CACC CTCT GGTG                 TTTTCGTATGCAGTG  52 299
SH02_RS11555 2330477 .. 2330506 -  -5.7  -2.71731   TTGACGGTGTAACCA       CTCATTCGACTGT AGGC ACTGTCGGATAAG        TTATAAAAACCTTGC  52 356
SH02_RS11550 NONE
SH02_RS11545 NONE
SH02_RS11540 NONE
SH02_RS11535 2327060 .. 2327075 -  -7.6   -3.6164   AACATGGATATATAA              GAGTAG GGGA CTACTC               TCTTTCTATTTTTAA  70 250
SH02_RS11530 2324643 .. 2324673 - -12.8  -3.28537   ATAGTCAATGAGGAA       TTCTTCTGCTGT GCGGATG ACAGCAGAAGAA       ATGAGAAGAGGCATT 100 39
SH02_RS11525 2324183 .. 2324199 -  -4.5  -4.08767   TTTATCTCCTTAAAA              CAATAAA GTT TTTATCG              ATACTTTTTTAACAT  63 68
SH02_RS11520 2323336 .. 2323358 -  -8.4  -2.53831   CGCCTAAAAACAACG           CGGGGCAG GGAATGG CTGCCCCA           TTTAATTCTTACGCA  63 73
SH02_RS11515 2321290 .. 2321309 -   -15  -2.76815   ATCTCGCTCAATAAG            GCGGCGGA AAAA TCCGCCGC             ATGAAGGTTTAGTTA 100 38
SH02_RS11510 2320034 .. 2320059 - -10.5  -3.80841   ATGATGATGACGAAA         CACCCGACA GGAATTTA TGTCGGGTG          CCTTGTTAAGGTCAT  86 79
SH02_RS11505 NONE
SH02_RS11500 2315690 .. 2315707 -  -6.2  -4.13945   ATCTCCATGCGAAAA             CCGGGC GAATTT ACCCGG              TTAAGTAAAATCCGA  69 45
SH02_RS11495 2312856 .. 2312880 - -13.6  -3.08201   GAATATTGCTAAAAT          CCCCGCCAAC GATGT GTTGACGGGG          CTGTTATTATTTTGG 100 32
SH02_RS11490 NONE
SH02_RS11485 2311077 .. 2311106 - -15.1  -3.57387   AACAGACTTTGGAAA       TTGTCCCGAAACG GGTT CGTTTCGGGACAC        CGTTACCGTTAAACG 100 44
SH02_RS11480 2309386 .. 2309408 - -13.5  -4.81685   AGCAAGCACGAAAAA           GGGAGCGAT GAATT ATCGCTCCC           TTGTCTTATAACCAT 100 51
SH02_RS11475 2307930 .. 2307968 - -11.8  -3.07962   TGGGATAGTTTAAGA   GGGTAACAAGCCGGTG GGTAAAG CACCGGCTTGTTACAA   AGTAAGAATGGGAGT  86 41
SH02_RS11470 2306245 .. 2306256 -  -5.8  -3.40597   TGGCGCATCTAAAGA                CTGG CTTT CCAG                 AGTTCAACACGGTTT  59 7
SH02_RS11465 2303787 .. 2303800 -  -9.5  -4.55798   CACGTTAAATGAAAA               CCCGC GAGT GCGGG                CGAGAGGAATTTGTC  95 39
SH02_RS11460 NONE
SH02_RS11455 NONE
SH02_RS11450 NONE
SH02_RS11445 NONE
SH02_RS11440 2298508 .. 2298518 -  -5.4  -2.80612   CGTAACGTTAATAAC                 GTGT CAG ACAC                 TTATAACCTCCTGCT  50 18
SH02_RS11435 2297501 .. 2297513 -  -3.3   -3.6682   TCTCAGGTACTGAAA                GCGGA AAT TACGC                TGGATTACCAGTTGA  51 104
SH02_RS11425 2296483 .. 2296494 -  -5.8  -3.32946   GTTTTAAGGACAACA                TCGC CGTA GCGA                 AGAAACACGTGCTAA  57 76
        rpsV 2296252 .. 2296273 - -13.1  -5.71295   AGATAAAAACAAAAA           CACCATTGC GCAG GCAATGGTG            TTTAATCGTCATTGA 100 58
SH02_RS11415 2294423 .. 2294446 - -14.6   -3.4404   AGGGAGAGGGAAATA          GCCCGGTAGC CTTC ACTACCGGGC           GCAGGCTTAGATGGA 100 32
        adhP NONE
SH02_RS11405 2292718 .. 2292769 - -10.3  -2.63257   ATTGTAGACAACGTA GGCTTTGTTCATGCCGGATGCGGCG TGAA CGCCTTATCCGGCATGA--AAACCC TTCAAATCCAATAGA  74 135
SH02_RS11380 2286741 .. 2286763 - -13.4   -3.1706   AATTTATCTGATTAA           CTACCGGGCC GTA GACCCGGCAG           TTATTTTAACCACGA 100 31
SH02_RS11375 NONE
SH02_RS11370 2284847 .. 2284868 -  -3.1  -3.54436   CAGACACTTATAGAA           TTAGTGA TGATTTAT TCACTAA            AAAGGCCATGAACTG  49 22
SH02_RS11365 2283079 .. 2283093 -  -6.4  -2.66964   TTACTCATGACATGA               CTCCTG CTC CAGGAA               TGAATTGGGATCTGA  54 85
        narZ NONE
        narH NONE
SH02_RS11350 NONE
        narI 2276343 .. 2276365 -  -6.2  -3.14132   CTGCGGTTTCATTAA           CGTTCTCCTG TGA CTGGAGAACT           ATCATAGCCTGCAAG  57 78
SH02_RS11340 2275402 .. 2275420 -  -2.3   -2.6927   ATCCGGCATACATTA             GCCCGGT TGTAG ACCTGAC             AGGCGAAGCGCATCA  40 51
SH02_RS11330 2273587 .. 2273600 -  -8.1  -5.31855   GACGAACAACAAAAA               GCAGC ACTT GCTGC                AGATATTACCGACGT 100 188
SH02_RS11290 2264738 .. 2264750 -  -4.8   -3.6682   GCCGACTCATCCAAA                CAGC CTGGC GCTG                TCTGCCGATGGCAAA  55 237
SH02_RS11280 2261415 .. 2261434 - -11.4  -4.06903   AATCGTTAAAGTAAA            TGCCCGGC AAAT ACCGGGCA             TCAAGGTAATTACTC 100 35
SH02_RS11265 NONE
SH02_RS11260 2257956 .. 2257971 -  -7.6  -3.40403   TCTTTCTCACGATAA              GAAACG CATC CGTTTC               TTAAGCGCCTTTCTG  62 417
SH02_RS11200 2249270 .. 2249309 -  -7.8  -2.79831   TGAATCTGCATGATA  TTGCCTGCCGGGTAAGGCG TTA CGCCGCATCCGGCAT-CAA  ATGACTCAACGTTGT  61 31
SH02_RS11185 2245330 .. 2245347 -  -9.9  -2.94888   AACCCACCGAAATGA             TTCAGGC GACA GCCTGAA              CGTAGCAGGGATCCA  73 64
SH02_RS11175 2243658 .. 2243677 -    -7  -4.07568   CGGTGCGCCGTAAAA            CCCCATCC TTCA GGGCGGGG             ATATAAGGCGCGGTT  70 191
SH02_RS11150 2239832 .. 2239860 - -12.5  -3.28791   ATGTCGGGTGGACAA        TCCGCAAAGCAAC CAG GTCGCTTTGCGCA        ATGGTTTTATCCTTG  83 115
SH02_RS11135 2238411 .. 2238428 -  -2.6  -4.30719   GGCTGGTATAACAAA             CGCCCA AGTCTG TGGGTG              GAACCGCGTAACAAG  60 510
SH02_RS11120 2234605 .. 2234620 -    -9  -2.75229   GAAAATGTTCAAGGA              GGGATC GACA GATCCC               TTCACCTTTCAGAAC  67 34
SH02_RS11110 2232375 .. 2232397 - -14.8  -3.65199   AATCTGCTAGTCAAA           TGCGCGGGGA AAA TCCCCGCGCT           TGCCCTTACCTGGAC 100 31
SH02_RS11095 NONE
SH02_RS11090 NONE
SH02_RS11085 2230164 .. 2230185 -   -13  -3.43853   TTAATGAGTGAAAGA           GGCGGAGG TTTTTT CCTCCGCC            TGTGCGCGTCAGAGT 100 34
SH02_RS11065 2222724 .. 2222737 -  -2.3  -3.27498   TACAGTCCACATCAA               GACCG TGTC CGGTT                ATGCAGAAACAATGC  45 24
SH02_RS11020 NONE
SH02_RS11015 2207914 .. 2207928 -  -7.1  -4.58466   TTGATAAGGATAAAA               CCGCA GACAA TGCGG               CGGAATATTTCTTCG  77 499
SH02_RS10940 2192044 .. 2192065 -  -7.3  -4.90778   CTTAGTGAAATAAAA           GGGCAAC TATTCGCC GTTGCCC            TTCATTCACCGATTA  85 38
        tynA 2189524 .. 2189538 - -11.4  -5.32944   CTCATAAGTAAAAAA               CGGCAC CTG GTGCCG               TTTTTTTGTCTGAAA 100 44
SH02_RS10925 2186828 .. 2186854 - -15.3  -3.33815   ATCTGTTTTAACTAA         TTGGCGTTGCA GTACA TGCAACGCCAA         TTAGTTAGCGGAATT 100 30
SH02_RS10905 2182305 .. 2182327 - -14.9  -2.74012   GGATTATCTGAATCA           GCTCCCCTG GAATG CAGGGGAGC           GGCAAGATTAAACCA 100 33
SH02_RS10900 2181443 .. 2181458 -  -4.6  -5.27769   ATAAAAAAGTAAAAA              TGCGGG GCAA CGCGCA               GGACAGCTCTCGACG  82 369
SH02_RS10890 2177684 .. 2177703 - -11.4  -4.16226   CATATAAAAAGACAA            GCCCGAAC AGTC GTCCGGGC             TTTTTTTTTAGAATT 100 63
SH02_RS10885 2176214 .. 2176232 - -10.2  -5.03945   GAATAAGCAGAAAAA             GCCCGCCA TAA CAGCGGGC             AGGAGGATTTAGAAC 100 34
SH02_RS10880 2175639 .. 2175658 - -10.7  -4.95957   GAAATGAATCAAAAA            GCCCGCA GCAATG TGCGGGC             GTTAGTGTCAGCGCA 100 33
SH02_RS10875 2174302 .. 2174312 -  -2.6  -2.77118   GAGACCCAAAATCGA                 TTTT GTG AAAA                 ATGGCTTTAACTCGG  42 185
SH02_RS10870 2173293 .. 2173309 -  -6.5  -5.80003   GGAAGAAACAAAAAA              CAACCTG ATG CAGGTAG              CCAGTGAGCATATTG 100 281
SH02_RS10855 2169898 .. 2169910 -  -6.9  -3.48276   CGCGGTGGCACAGAA                CACGG CAG CCGCG                AAGAAGTCAGCCAGT  63 142
SH02_RS10850 2169287 .. 2169299 -  -3.3  -4.19238   TTCCCAAGGGGAAAA                CGCAC GAC GTGCT                GACCGGAAGTGATGA  60 192
SH02_RS10840 2168179 .. 2168190 -  -5.8   -2.7927   AAACACATCGAATCA                GCCT ATTT AGGC                 TATTTTTTCCACCAT  53 62
SH02_RS10775 2160212 .. 2160231 -    -2  -3.90744   GGGGGGGTTAAATAA            CGGAATCC AGGA GTTTTCCG             TCAGACCATATAAGT  51 41
SH02_RS22925 2159450 .. 2159471 -  -7.4  -3.64822   ATCGCTGTATTTAAA           GATTTCCT TAAAAC AGGAAATC            TTATTATCACTTCTC  66 192
         kil NONE
SH02_RS10760 NONE
SH02_RS10755 NONE
SH02_RS10750 NONE
        recT 2154428 .. 2154468 -  -8.3  -5.24129   TTTTCTCATAAAAAA  TATTTCAAGTTGGCGGTGC ATT ACACCGCCAGGCTGAATTA  TTCCTCTGAATTATC 100 23
         lar NONE
SH02_RS10735 NONE
SH02_RS10730 2153462 .. 2153472 -  -3.2  -4.04318   TCCAGATATCACAAA                 GCTC TCC GAAC                 GTTTTTATGACTCTC  56 272
SH02_RS10725 NONE
SH02_RS10720 2151461 .. 2151484 - -14.6  -2.80074   GCCTCCATAAGAGTA          GCCCGATACG CTTG CGCATCGGGC           GCTATCCTGGTTATT 100 36
SH02_RS10700 2146972 .. 2146982 -  -2.4  -4.21194   TCGCACTACGTAAAA                 CGGC GCA GGCG                 AAGCAAGAAAACTGG  58 88
SH02_RS10690 2146147 .. 2146175 - -12.5  -5.63504   AACTGCATAAAAAAA        TAGAGTCTGTCGA CAT CCGCCAGACTCTA        CAGTACACACAGCAG 100 53
SH02_RS10680 2143744 .. 2143756 -  -3.3  -2.94099   TTCCTGCATCAGATA                CCTCG CGT CCAGG                GAAAATTGAGCGCGG  44 6
SH02_RS10675 NONE
SH02_RS10670 NONE
SH02_RS10665 NONE
SH02_RS10660 2140138 .. 2140155 -  -8.5  -4.14739   CTATCTATTTGAAAA             CCCTTAA GTTG TTAAGGG              TAACTTTACATAAAA  79 73
SH02_RS10655 2139186 .. 2139234 -   -12  -3.23638   TGAAACAGTGATGAA CCTTCTGCCAGATCAATAAATC AGAAA AATTTAATGATATGACAGAAGG ATAGTGAGTTATGCG  86 47
SH02_RS10650 2138113 .. 2138134 - -10.1  -5.30155   GCAGTAAGTAAAAAA           TAGGCCCGA TAAC TCGGGCCTT            GTCAGTTATTGAAGA 100 45
SH02_RS10635 2135149 .. 2135171 -  -3.5  -3.63589   GAAAATACCGTTAAA          GCG-CGTAAT GCCG ATTACAACGC           GGCAGAAAAAATCCT  53 227
SH02_RS10615 NONE
SH02_RS10610 NONE
SH02_RS10605 2130021 .. 2130045 -  -4.1  -3.62597   GCGATGCTTGAACAA          CCGCTTCCTGC GCA GGACGATGCGG          CGCTGGAGAATTTTA  53 332
         tpx 2128753 .. 2128779 - -19.6  -3.06737   GAGTAAGCGCGAATA         TGCCTGATGGTG CAA CACCATCAGGCA         TATTAAATTATGCTT 100 33
SH02_RS10575 2123386 .. 2123427 -  -6.5  -3.92373   TATCCGATCTATAAA TGTAGGCCGGATAAGATGC GCTA GCATCGCATCTGGCATTCA  GGCAAGGTAGCTGGT  67 43
        pspF 2107152 .. 2107170 -  -2.3  -4.54047   CGATTGCACAGAAAA             TCCAGCA ACGCG CGCTGGC             GCAGGGGCTGCTCCT  63 272
SH02_RS10460 2099958 .. 2099969 -  -7.2   -4.0031   AGGCCGATGAAACAA                CCCC GCAA GGGG                 TATTACGCGTTTTTC  72 28
SH02_RS10455 2098234 .. 2098275 -   -16  -3.12351   TCTTTTTATAGTTAA TGGCGCGGCGCGTTACCCT CAGGC AGGATAATGCGCCGCG-CA TCCGACTATTACGTT 100 34
SH02_RS10450 2097874 .. 2097885 -  -2.2  -3.31144   GCTTTATCCGGACAA                CGAT ACTG ACCG                 ATCGTCTGCAATTAA  45 45
SH02_RS10445 2097639 .. 2097650 -  -2.2  -3.20348   CTTACTAATATTTAA                TGAC ATTT GCCA                 TTACCGTTTGTGTTC  43 10
SH02_RS10440 NONE
SH02_RS10435 NONE
SH02_RS10430 NONE
SH02_RS10425 NONE
SH02_RS10420 NONE
SH02_RS10415 2091761 .. 2091773 -  -4.8  -3.72374   CCCCAGCAACAAACA                GGCT CATAC AGCC                CCTAACCCTTTCATG  57 141
SH02_RS10410 2090694 .. 2090714 - -12.5  -3.71149   GTATAACAGAGATAA            CGGGCGGCA GAA CGCCGCCCA            TCTTTACCAACAGAA 100 44
SH02_RS10405 2089421 .. 2089454 -  -5.2  -2.78384   TTGGTGGCCATTAGA     GCGGCTGACAGTTT TACGCG AATCTGTCTGACGC      GGCAAGGTTAATATG  50 33
SH02_RS10400 2087425 .. 2087449 - -13.6  -4.42062   GAGCGGGGAAATAAA          CGGCCCATCC ATGAG GAATGGGCCG          TGAAAGGAGATTACG 100 36
SH02_RS10390 2085138 .. 2085168 -  -2.7   -4.8143   TGAATAATGCAAAAA       TTGCCGCTAAA AGAGAAGTG TTTAACAGCAA       CGGCTAATTATCATC  67 96
SH02_RS10385 2084902 .. 2084942 -  -3.2  -4.49756   CCTCAAATAGGAAAA  CCTGAAGGCACGATTG TTAAATCTC CCACGGTGCCTTCGGG  ATGTCTGGCGTAGAT  63 1
SH02_RS10380 2083902 .. 2083915 -  -3.8   -2.7263   ATTATTCCGTGAAAT               CTGC TCGCGC GCAG                GGTTATATCACGCAG  44 189
SH02_RS10375 2083475 .. 2083494 - -13.6   -5.0916   CGGTTAACATAAAAA            GCCACGGA TATA TCCGTGGC             TTTCGAATATTTTAC 100 123
        ribA 2078995 .. 2079029 - -11.6  -2.98947   TTGAAGTAACAACTA     TTTGCTTGCCGG TTATTTTGCTT CCGGCAAGCAAA     TGAATTACACAATGC  83 48
SH02_RS10335 2075837 .. 2075854 -  -3.4  -4.41087   ACAATGAAACAGAAA             CGAAAC GGGAAT GTTCCG              TCGTTATTCCAGACG  62 185
SH02_RS10305 2070872 .. 2070891 - -11.4  -4.46775   GATGTAAAAGACAAA            CGCGAGGC TAAG ACCTCGCG             TTTTGCTTTAATCAA 100 33
SH02_RS10295 NONE
SH02_RS10290 NONE
SH02_RS10285 2068218 .. 2068238 -    -9  -3.02166   CGGTTAATCAAAGTA            TGCCGGAC GTCAT ATCCGGCA            TTTTTACAGATTAAT  68 36
SH02_RS10260 NONE
SH02_RS10255 NONE
SH02_RS10250 NONE
SH02_RS10245 NONE
SH02_RS10240 2056869 .. 2056891 - -11.2  -4.45261   TAAAGAAAGTTAAAA           TGCCGCCAGC GGA ACTGGCGGCT           GTGGGATTAACTGCG 100 32
SH02_RS10235 2056273 .. 2056294 - -13.7  -2.94144   TCTCCAGTGAAATCA           CTGCGAGCC ATAC GGCCCGCAG            ATGCAATTATCTTTA 100 69
SH02_RS10230 2055713 .. 2055731 -  -2.4  -3.16914   ACGATTCATGAAAAT             GTCCTCTT TAT AAAATGAC             TAAAAGTTAAAATTC  43 46
SH02_RS10225 2055154 .. 2055176 - -14.2  -4.84017   AATTCCGCACAAAAA           CGACCCCGTA ATA TACGGGGTCA           ATAAGGACATGGTAT 100 49
SH02_RS10215 NONE
SH02_RS10210 2052747 .. 2052781 - -10.8  -4.22948   AAAACCGACTTAAAA     GGAAAATCACAGGCGC GAT GCTACTATGATTTTCC     TGAGGAGAACAGAGG  93 77
SH02_RS10205 2052298 .. 2052327 - -19.5  -4.08144   TTCAGTAAGCAGAAA       GTCAAAAGCCTCC GACC GGAGGCTTTTGAC        TATTACTCAACAGGT 100 28
SH02_RS10195 2051010 .. 2051028 -  -8.9   -4.1023   AAGGCCAAACAAGAA             CACGGTT GCAAA AACCGTG             CCCTTAAATATTGAA  83 48
SH02_RS10190 2049449 .. 2049471 -   -12  -2.67958   CAATATCTAAATGTA           CTGGGCACCA TTG CGGTGCCCAA           TAAGTTTACTCTTCC  83 52
         cls NONE
SH02_RS10175 2047254 .. 2047285 - -10.2  -4.57073   GATCCGCTTTAAAAA      CAATAAGGGCTGAC AGTT GTCAGCCCTTTTTC       ACGCTAAAAGCGATT 100 43
SH02_RS10140 2037011 .. 2037032 -  -9.4  -4.77567   AGTGGCATAAGAAAA           CGGCTCCC TGTTGT GGAAGCCG            TTATAGTGCCTCAGT 100 120
SH02_RS10135 NONE
SH02_RS10130 2036084 .. 2036100 -  -2.1  -4.45696   GGTAAACAAAAAATA              CGGCCCC AGA AGGGCAA              TGCCGTTCACTTAAG  60 32
SH02_RS10120 2034146 .. 2034162 - -13.7  -5.55769   CCGGACAATAAAAAA              TCCCGCC GCT GGCGGGA              TTTTAAGCAAGTGCA 100 53
SH02_RS10100 NONE
SH02_RS10095 2029471 .. 2029484 -  -3.9  -4.00042   CTGGCGATTAAAGAA               TAATC GTTC GATTA                CCGTAAACAAAGACG  58 4
SH02_RS10090 2029198 .. 2029211 -  -6.7  -2.55015   ATCTCACCGAAGTTA               CCACA TCGC TGTGG                TGAATTATGGTGGTG  55 33
SH02_RS10085 NONE
SH02_RS10045 NONE
SH02_RS10040 2016766 .. 2016809 -  -3.8  -3.65812   GGTGGTGGAAGATAA CCAGGGGCAGCGTG-TCTCCT CCA ATGAGATCACGCTAACGCTTG TCGAACCGTTCGATG  53 76
SH02_RS10030 2014488 .. 2014511 -    -6  -2.64144   CTTGCACTGAAAGAG          GGCGGACGC ACCACAG GCGT-CGCC          TATCGACTGCCAGAA  50 441
SH02_RS10015 2012393 .. 2012421 - -12.5  -2.67209   CAGGAATTTATATTA        TCTCCCCCGATTA CCG TCATCGGAGGAGA        TATAACTGTCAGGCA  88 34
SH02_RS10010 2011843 .. 2011870 -  -9.8  -5.26155   AGATAAAGACAAAAA        TGGCCGCAGG CTGTTACC CCTGCGGCCG         GTTTCGGGCGCATAT 100 74
SH02_RS10005 2011308 .. 2011335 -  -9.8  -5.24799   TGATAAAGACAAAAA        TGGCCGCAGG CTGTTACC CCTGCGGCCG         GTTTCGGGCGCATAT 100 74
SH02_RS10000 2010774 .. 2010799 - -13.3  -5.36441   GCCGGATACAAAAAA         GGCCGCAGG CTGTTACC CCTGCGGCC          GGTTTCGGGCGCATA 100 75
        lolB NONE
SH02_RS09960 2003673 .. 2003687 -   -10  -3.62522   CAACGTCTGGAACAA               GGTGAC GTT GTCACC               GAAACTCAGCTTGCC  80 45
SH02_RS09955 2002577 .. 2002590 -  -9.5  -5.76633   TTACAGACAAAAAAA               CCCGC CGCA GCGGG                TCTTTGAGCCGGGTT 100 44
SH02_RS09950 2000487 .. 2000508 -  -3.7  -3.48629   ATGAAACGCAAAAAC           GCTTCGTTAC TCG GTAACGT-GC           TCATGGGGTTGGGTC  51 322
SH02_RS09940 1999523 .. 1999546 -    -9  -2.80499   TAATATCTTAATAAT          CAACCTGTTA TTGC TAACAGATTG           CAGAAATGGAAATAA  67 89
        ychF 1998324 .. 1998341 - -11.3  -4.98531   CGGTGAAATGAAAAA             TCCACGC AATT GCGTGGA              TTTTATATACTTTTG 100 86
SH02_RS09925 1994671 .. 1994685 -  -7.2  -3.44848   GCCGGGTATGAAAGA               CAGAAA CGA TTTCTG               ATACATCAGAGTGAT  66 106
SH02_RS09915 NONE
SH02_RS09910 NONE
SH02_RS09905 1989338 .. 1989371 -  -9.7   -2.8372   TAGTGCTGAGTAAAT     TG-CCGGATGACATCA GAA CGATGCCATCCGAACA     GTGGCTTAACCCTGA  72 31
        treA 1987288 .. 1987299 -  -4.4  -5.24129   TCTGTGTAGAAAAAA                CCAT AGCT ATGG                 TGTTATCTGCCGACA  78 86
SH02_RS09885 1984996 .. 1985006 -  -4.6  -4.02253   CCAATAAGCCAGAAA                 GCCG GTG CAGC                 CTGGGGCGTCGATCC  62 493
        ldcA 1983791 .. 1983812 -  -2.2  -4.03234   TGTCTCTTATATAAA           CCCTACCA TATTAG CGGCAGAG            ACAGCGTTTTACTTA  53 60
        cvrA 1981739 .. 1981761 -  -7.8  -2.78816   CCATTGCCCATGATA           GTGTCCAT TAAAAGG ATGGACAC           TATTTCCCCGGAACC  61 280
SH02_RS09855 1977361 .. 1977376 - -10.4  -4.00532   CGTTTAAAGAGCAAA              CCCCTC AAAC GAGGGG               TTTTTTGTTGTTTTT  89 39
        nhaB 1974827 .. 1974846 - -13.6  -3.92659   GGGCGAAAAGGCAAA            CCGGGCAT TTAT ATGCCCGG             TAAGTTGTTATCAAA 100 36
SH02_RS09840 1974155 .. 1974172 - -12.7  -5.14965   AGCGGCAGGAAAAAA             GCGCTCC CGCA GGAGCGC              CGAATGGATTAGCGA 100 34
        hlyE 1971049 .. 1971089 -    -7  -3.28791   AGCGCTCTGTCATAA  TGAGAGTTACCCGATA CCTTATTAT CAACAGGTAACTCTCA  ATCTTTAAAAAACGT  61 100
SH02_RS09800 1968478 .. 1968494 -  -2.3  -4.10855   AAAAGCCGCTGAAAA              CTTACAA TCA TTACAAG              GCTACGATCCCAGCG  56 283
        minC 1967070 .. 1967090 -  -3.3  -3.29973   TTAAAAAGGGATCAA            TTTAACGGT TGA ACGGTCAAA            GCGTTTTCGACTAAC  47 1
SH02_RS09785 1966229 .. 1966245 -  -3.7  -3.37464   CGAGTAATGCCATAA              CTTATCC TCC GAACAAG              CGTTTGAGGAAGCCT  49 10
        minE 1965908 .. 1965935 -   -15  -4.76041   GAGAGGGATGAAAAA        CTCAAGGCAGAG ATAA CTCTGCCTTGAA         GATAAATGCGCTTTT 100 50
SH02_RS09770 NONE
SH02_RS09765 NONE
SH02_RS09760 1963950 .. 1963972 -   -12  -5.08824   CCGTTAGCTAAAAAA           CCGCGTCG TATTCAT CGACGCGG           TACATATGAAATATT 100 39
SH02_RS09745 1960760 .. 1960776 -  -5.1  -4.13945   ATCCTTATTGCAAAA              CCCAG TACCGGG CTGGG              AGAAGTGCTTGTGAC  65 136
SH02_RS09710 1955791 .. 1955826 -  -9.3  -3.70109   TACACGACCCAATAA    TACTTTGTACAATAT ACGCTA AAATTGTACAAAGTA     TAAATAAGATTTCAG  78 144
SH02_RS09705 1954779 .. 1954792 -  -6.7  -3.17725   TTTGAAAAACAACGA               CCTGA TCCA TCAGG                ATAATAACCTCTTGT  59 242
SH02_RS09700 NONE
SH02_RS09695 1954148 .. 1954166 - -10.2  -3.71527   CGTTAAGTATTGAAA             CGGACGTG TGG CACGGCCG             TTGTTTTTATAAATA  82 80
SH02_RS09690 1953284 .. 1953302 - -12.4  -3.81137   TGTTAAATATTGAAA             CGGGCGTA TAA CACGCCCG             TTGTTTTATTTATGT 100 84
SH02_RS09675 NONE
SH02_RS09670 1950485 .. 1950536 -  -6.4  -3.17382   AACAACCAGACTTAA CGCTGTGCTGGATTACATTGACGC GGTG ACGGCAACAGATACCAGCACCGCG CCGGATGTCATCTGG  54 33
SH02_RS09615 1943912 .. 1943925 -  -8.1  -5.71983   TCAAGTATAAAAAAA               CCTGC CGAA GCAGG                TTCATAAACATTGAT 100 40
SH02_RS09610 1943247 .. 1943257 -  -2.6  -3.75617   AAAAAATTTGAAGAA                 TTAA TGC TTAA                 CTTTCTGTACCAGAA  52 225
SH02_RS09605 NONE
SH02_RS09600 1941336 .. 1941372 -  -2.1  -3.32997   CGGTGAGAAATTCAA    TGTGGCGTTGAGATGCT TAA AGGTTCACAACGCTACT    TTGCTCCATCCTTTA  45 13
SH02_RS09590 NONE
SH02_RS09585 1938477 .. 1938492 - -11.8  -5.15969   GCGGAATGTAAAAAA              GGCCGC GAGC GCGGCC               CCTTCACATACATCT 100 81
SH02_RS09575 NONE
SH02_RS09570 1935476 .. 1935511 -    -4  -3.14647   ACTCACGACATTGAA    CTTCAAGGCGGCGT-AT TCT ATCACGCAGCCTTTTAG    ATGACACCCTTTGTA  49 22
        mnmA NONE
SH02_RS09560 NONE
SH02_RS09555 1932258 .. 1932287 - -12.9  -2.81326   GATAATCTTAATAAG       CAG-GCCGGACAGC ATC GCCATCCGGCACTG       ATACGAGGTTTATTT  91 35
SH02_RS09550 NONE
SH02_RS09545 NONE
SH02_RS09540 1928759 .. 1928785 - -15.2  -4.32201   GGAAGTAAGCGAAAA         GGGATGCGGCAT GTG ATGCCGCATCCG         GCTTAAATCCAAACT 100 40
SH02_RS09530 NONE
        potA NONE
        potB NONE
        potC NONE
        potD 1923433 .. 1923454 - -13.7  -5.26875   TTGCTAACTAAAAAA           CGGGCGGTA ATAC CACCGCCCG            CTTGCTGAATTAACG 100 35
SH02_RS09505 NONE
SH02_RS09500 1922110 .. 1922121 -  -7.2  -3.28712   TTGTGGGCCGGATAA                GGCG TTCG CGCC                 CCATCCGGAATAATA  64 64
SH02_RS09470 1915751 .. 1915768 - -12.7  -3.30701   GTTTAGCAAATTGAA             TCGCCCC GGCT GGGGCGA              TGGCTTAGCGGGAGT  95 30
SH02_RS09465 1912093 .. 1912104 -  -2.2   -4.1822   GGTTATTGTAATAAA                CAGA TAAG CCTG                 AATTATGGATGGTGA  55 120
SH02_RS09460 1911012 .. 1911031 -  -5.8  -4.11304   GTAATTTATAAATAA            GCATTAAC CCTC ATTAATGC             CTGCTACTGCTGATT  68 87
SH02_RS09450 1909425 .. 1909448 -    -3  -4.17491   AGGAAACGGTTAAAA          CACCGCGTCA GGAG TGTCGCAACG           TCACAGTGACCCATC  60 458
SH02_RS09405 1901008 .. 1901025 - -12.7  -3.25823   CGTTGGGGAGACTAA             GGCAGCC AGAT GGCTGCC              TTTTTTACAGGTGTT  95 43
SH02_RS09330 1887604 .. 1887651 - -11.8  -2.64194   TATAAACCTGATAAT GGGCGGTTGGCCTGATAAGGCG TTTA CGCCGCATCAGGCCGCCAGCAC CGATTGCCGGATGCG  83 66
         rne 1882822 .. 1882841 - -11.4  -5.69793   AGATGAAATAAAAAA            GCCCTGGC AGTT ACCAGGGC             TTGATTACTTTGAGC 100 47
        flgA NONE
SH02_RS09250 NONE
SH02_RS09245 1871063 .. 1871087 - -15.7   -2.6563   CGGTGTAACAATGCA          TTCCGGCCTGC AGT GCAGGCCGGAG          ATAATCTTCAGATCG 100 33
SH02_RS09220 NONE
SH02_RS09215 1865046 .. 1865077 - -12.2  -4.55016   AGAAAAAACTGAAAA      CGGCGGCAACCCGC GAAT ACAGGCTGCCGCGG       CGGGTCAGGATTAAA 100 36
SH02_RS09210 1864372 .. 1864387 - -11.8  -4.91852   TGCACGAAAAATAAA              GGGCGC GAAT GCGCCC               TCGTGATTAATCAGT 100 32
SH02_RS09205 NONE
SH02_RS09200 1862889 .. 1862904 - -11.8  -5.85244   AAGTAAAATAAAAAA              GCCGGG GCGA CCCGGC               AAAAAAAATCACTGC 100 44
        bssS 1862341 .. 1862357 -  -9.4  -3.74347   CCCAGAAATGGTAAA              GGCACC GGTGA GGTGCC              TTTTGGGTGGATGGT  81 50
        solA 1861120 .. 1861139 - -10.7  -4.57837   ATACTCCTGTAAAAA            CGGCCTC ATTCTG GAGGCCG             TAATGATGATTATTG 100 35
SH02_RS09185 NONE
SH02_RS09180 NONE
SH02_RS09175 1859547 .. 1859571 - -14.4   -2.9735   ACAGAATAAATATCA          TTGCCGGATG CGTGC CATCCGGCAA          CATTTCACGCTTACT 100 36
SH02_RS09165 1857236 .. 1857259 -  -7.4  -2.83233   TAAGCACACTAATTA          TGCGCCCGACT TCC AGG-GGGCGCA          ATCCAGAGAGCTTTT  59 109
SH02_RS09160 NONE
SH02_RS09155 NONE
SH02_RS09150 1855218 .. 1855236 - -10.3  -5.11063   ACGAGCCAATAAAAA             TACCGGC GTTAT GCCGGTA             TTTTTTTACGAAAGA 100 277
SH02_RS09130 1850800 .. 1850811 -    -3  -4.55295   CGGTTGATAAATAAA                TTTG CTGG CAAA                 CCCTACACGAAGTCG  63 28
SH02_RS09125 NONE
        opgC 1849383 .. 1849413 - -11.8  -5.03715   ATTATTCTCAAAAAA       GAACCCGCCACCAG TTT CTGGAAGCGGGTTA       TGGTCAGACTGGCGT 100 77
SH02_RS09085 1845335 .. 1845350 -  -4.6  -3.09273   TGTGCGCAAGACATA              TCGCAG CAAT CAGCGA               CGGGCAAGAAGAATG  51 19
SH02_RS09080 NONE
SH02_RS09075 1843790 .. 1843808 -  -3.8  -2.87243   GCATGAGTAGAACTA             CTGCATGT TTG ACACGCAT             TGCAGCCTCCGAACA  45 50
SH02_RS09070 NONE
SH02_RS09065 1842459 .. 1842485 -  -9.5  -5.01811   GCAGGAAATCAAAAA         TAAAGCGTGAG GGGCA CTCACGCTTTC         GCTTAAACAGTAAAA 100 72
SH02_RS09040 1839213 .. 1839232 -   -10  -5.92337   ATATACGAAAAAAAA            GCCCGTAC TTTC GTACGAGC             TCTTCTTTAAATATG 100 39
SH02_RS09020 NONE
SH02_RS09015 1835656 .. 1835666 -  -3.2  -3.29511   TCGACTGGCTGATAA                 CGCA CTT TACG                 AGGCGAAAGAGACCG  47 134
        pgaA NONE
        pgaB 1829281 .. 1829306 -  -5.5   -2.9621   ACCAGAGTGAAAGTA         CGCTACGCATA GGGG TATGCATAACA          CCAGACATAATATAA  52 58
SH02_RS08995 NONE
        pgaD 1827508 .. 1827541 - -14.7  -2.84325   GTTCGGTAAAGAGGA     CTGCGTACGTTCGGCA CTT TGCC-AACGTACGCTG     CATGCCTACAGTTAA 100 90
SH02_RS08980 1825580 .. 1825590 -  -4.6  -3.34398   GCTGGGTTTCAAAGA                 CGGC ACT GCCA                 ATCCCGATAGCCAGA  53 500
SH02_RS08960 1822309 .. 1822323 -  -8.6  -3.72893   CACGGTTGCAGGAAA               GCTAAG GGA CTTAGC               CTGCGGCGGTTTTGT  73 201
        putA 1816385 .. 1816412 - -15.6  -2.63089   GACCACGTTAAAGAT        GCCGGAGGAGGT TGTA ACATCCTCCGGC         TACCTGTTTAACCTA 100 33
SH02_RS08935 NONE
SH02_RS08930 NONE
SH02_RS08925 NONE
SH02_RS08920 NONE
SH02_RS08915 1811871 .. 1811884 -  -2.3  -3.28712   GTTTGCTCCTTACAA               CAGCC CGCA GGCTT                CTTCAAAGGACAGAC  45 6
SH02_RS08910 NONE
SH02_RS08905 1809513 .. 1809528 -  -7.6  -4.19817   CCCACGTAGCGAAAA              TATGGC AGCC GCCATA               CGCCGCGTTAATTCT  76 508
SH02_RS08890 1808615 .. 1808632 -  -4.1  -2.73875   TCCTGTTGAAGATTA             GCCGTTA AGTT TAACTGC              CAGACCTGCGACATA  46 5
SH02_RS08885 1808334 .. 1808356 - -16.3  -4.84673   TGAAATAACAGAAAA           CTCCCCCGC GAGAA GCGGGGGAG           TCGCTGGTTAAACGT 100 33
SH02_RS08870 NONE
SH02_RS08865 1803920 .. 1803934 -  -7.1  -4.07568   TTGTGCGCCTGAAAA               GACGC GTTTA GCGTC               GCATCAGGCATTATG  72 141
SH02_RS08845 1798392 .. 1798422 -  -8.2   -3.7456   ATAACGATATTGAAA       TCCAGCGTAACCTG TTG CAGGAGATGCTGGA       ACGCCATCCAGAAAT  72 365
SH02_RS08835 NONE
SH02_RS08830 1793594 .. 1793604 -  -2.4   -4.8236   GAGTTAAAAAAACAA                 GCCG AAA CGGA                 AATCGCCGACTTTAT  68 210
SH02_RS08810 1792384 .. 1792395 -    -3  -3.04398   TTCTTTGTGGAAAAG                TAAC TGAT GTTA                 TAATGTATGATGTTG  44 93
SH02_RS08800 NONE
SH02_RS08795 1790878 .. 1790901 -  -9.6   -2.7806   TGCAAATCTCTAAAG          CCCGGT-ACGA ATA TCGCAACCGGG          TATCATTTAACTTTA  70 63
SH02_RS08790 NONE
SH02_RS08785 1789427 .. 1789446 -    -3  -4.14739   CCAGGCAGCTTAAAA            GAT-AAGAA TTC TTCTTCATC            AGTCAGGAACACGTT  58 24
SH02_RS08780 NONE
SH02_RS08775 NONE
SH02_RS08770 NONE
SH02_RS08765 1783427 .. 1783450 -   -14  -5.31456   GTAATGCATAAAAAA          GAGCATTCAG TTAC CTGAATGCTC           TGAGGCTGATGACAA 100 105
SH02_RS08710 1773092 .. 1773114 - -13.5  -5.48213   CAGGCAAAAGAAAAA           GGGGTTAGC ATTTA GCTAACCCC           TTATCTTATTTGGCG 100 36
SH02_RS08705 1772213 .. 1772239 - -10.1  -5.46657   CAGTGTAACAAAAAA         CAAAGCCCCGC ATAAA GCGAGGCTATG         AAAGTGTTAGCGGGT 100 45
SH02_RS08700 NONE
SH02_RS08690 1770240 .. 1770264 -  -2.2  -2.71924   CACCTCCCGGGAAAT          CTTTACCTTT GATAT AAGGGTAAAA          TTCCACATTTCAAGT  40 40
SH02_RS08685 1769864 .. 1769891 - -17.8  -5.63517   TGGCCAAATAAAAAA        TCCCCGGAAGGC AAAA ACCTTCCGGGGA         TTTGTTCAGGGATTA 100 38
SH02_RS08675 NONE
SH02_RS08670 1768588 .. 1768601 -  -8.1   -4.7889   ATAAAGACCGAAAAA               GCCTG CGCA CAGGC                ACAAAAATCTCAGGA  91 35
        mgsA 1768030 .. 1768049 - -13.6  -4.24711   GAAAACCGTAAGAAA            CAGGTGGC GTTT GCCACCTG             TGCAATATTACTTCA 100 33
SH02_RS08655 NONE
SH02_RS08650 1763241 .. 1763253 -  -7.7  -3.57144   TCTCTTACGCCGAAA                CAGGA GTT TCCTG                CGGAACTTGAGTAAT  68 2
SH02_RS08640 1761695 .. 1761715 -  -4.7  -3.64703   CCCTGGCGATGTAAA            GTCTACAAC GTA GTTGAAAAC            TTACAAGTGTGAACT  57 220
SH02_RS08630 1760466 .. 1760502 - -13.2    -3.794   GTTCAATTTACTAAA   GGCAAAAAAAACCCCGC AGCA GCGGGGTTTTTCT-ACC    AGACGAGAACTTAAG 100 36
SH02_RS08620 1758034 .. 1758048 -  -5.7  -2.77895   TGTACGCTGAACAAG               TCCGA TCAGT TCGGA               ATAAACCAGTTCAGC  53 16
SH02_RS08615 1757400 .. 1757424 - -18.7  -4.56597   CTGTCTCTTTAAAAA          GAAACCTCCGC ATT GCGGAGGTTTC          GCCTTTTGATACTCT 100 53
SH02_RS08580 1747853 .. 1747874 -  -2.3  -4.09739   TGAATCTGGCGAAAA           TGCC-GCA CTATGCC TGCTGGCA           CAACCCTGCGTTGTT  56 142
SH02_RS08530 NONE
SH02_RS08525 NONE
SH02_RS08520 NONE
        ssuC NONE
        ssuB 1734742 .. 1734771 - -20.1  -4.06419   TGGCTTGATAAATAA       CCGAATGGCGGCA ATAG CGCCGCCATTCGG        GGAATTTACCCCTGT 100 31
SH02_RS08500 1730628 .. 1730645 -  -9.1  -5.58209   TTAAAGGTAAAAAAA             GGGAGCC GATT AGCTCCC              TGATGATATTAACTG 100 34
SH02_RS08495 1729051 .. 1729070 - -13.6   -5.9362   GAAAAGATAAAAAAA            GAGCCAGC GGGC GCTGGCTC             TTGAAGACGCTAAAT 100 40
SH02_RS08490 1727347 .. 1727362 -    -9  -5.97575   AAGGTATAAAAAAAA              CAGGAC CAAA GTCCTG               TTTTTTCGGCATTTA 100 57
SH02_RS08480 1725811 .. 1725829 -  -4.4  -5.38951   AAGGCACATAAAAAA             GCCCGCTT TTA ATGCTGGC             CTGGATTTCTGGCAA  81 215
SH02_RS08440 1713873 .. 1713888 -    -4  -3.58343   CGCAGCATGTTGAAA              GATTCGC GCA GCGA-TC              AGTTACTGGCGATGG  53 259
SH02_RS08365 1696298 .. 1696320 - -11.3  -2.86654   CAAATATATGTAAAG           CGGGGCATT AAAAA AACGCCCCG           TAATATAACTCAGAC  81 77
SH02_RS08360 1695059 .. 1695076 -    -2   -3.1247   AGCTCGGACATGTAA             CACCTA CCTTCT TAAGTG              GATTTTTTATTTACT  43 58
SH02_RS08355 1692710 .. 1692729 - -11.4  -5.00616   TCTCGCGCTAAAAAA            GGCCCCAC TTTC GTGGAGCC             TTTATTGTACGCTTT 100 68
        pflA 1691804 .. 1691827 - -13.2   -5.4505   GCGCGGAATAAAAAA          GCGGCAACTC AATA AAGTTGCCGC           TTTACGGGGAAATTA 100 38
SH02_RS08340 1689843 .. 1689854 -  -2.2  -2.93715   ACAATCTCTATAAAT                GGCT GTTG AACC                 TTAATTCGGTAGTGA  41 331
SH02_RS08325 1686406 .. 1686423 -  -9.8  -3.89572   AGCTAATCATAACAA             CCGGGG TTTCGG CCCCGG              TTCTCTTTTATTTCT  84 33
SH02_RS08280 1672529 .. 1672555 -  -9.5  -5.04249   CGGGGAAAAAATAAA        GGCGAC-CCATA GTCG CATGGTGTCGCC         TTCTTTACTTTTGTT 100 55
SH02_RS08275 NONE
SH02_RS08270 NONE
         aat 1668069 .. 1668079 -  -8.2  -3.40622   TACTCCGAAAACACA                 CGGC TAA GCCG                 CACCAAAAGCGCAAC  71 174
SH02_RS08260 1667666 .. 1667682 - -10.1  -5.56263   ATCACAAAATAAAAA              GGCCGGT TAA ACCGACC              TTTTACTCGTTCTTT 100 68
SH02_RS08255 1667351 .. 1667370 -   -10  -5.82388   AAATGCGAAAAAAAA            GCTCGCAC TTTC GTACGAGC             TCTTCTTTAAATATG 100 39
SH02_RS08240 1663809 .. 1663829 - -12.6  -4.96848   TTTTTGAGATAAAAA            TGCCAGCC GATCG GGCTGGCA            TTTTGCCTTTAGGAT 100 62
SH02_RS08225 1659340 .. 1659357 -  -6.9  -3.61715   CAGCCTGTTGAATAA             CGATCGG GAAG CCGAACG              AGAACATTTAACGGC  63 296
SH02_RS08215 1657652 .. 1657666 -  -3.5  -3.81926   TATTTTAAAAACGAA               GGCGA GTCAT TCACC               AGATAAATAAATCCA  56 119
SH02_RS08210 1656820 .. 1656840 - -11.1  -5.46629   AACATCTTAAAAAAA            GGCCTGACA TTA CGCCAGGCC            TTCTGCGTTAATTAA 100 37
SH02_RS08205 NONE
SH02_RS08200 NONE
SH02_RS08195 1652647 .. 1652672 - -11.9  -3.38581   ACTAACGGTTAAATA         GCCCGATGAAA GGAA TATCATCGGGC          ATAAGGCGATTATGC  89 35
SH02_RS08190 1650794 .. 1650824 -  -2.6  -2.89569   TGCGTAAATCAATCA       TGGCATGTCC TTATTATGACG GGAAATGCCA       CCCTTTTTACCTTAG  42 32
SH02_RS08185 NONE
SH02_RS08180 1648283 .. 1648340 -    -3  -2.50387   GTTGAGAAAATAACG TGCG-CATTCTTCCGTGATTTCCCCCATG ATG CA-ATGGGAAA-CATGAAAGAATAACGCA GGTTTTGTCGATTAA  42 37
SH02_RS08175 1647197 .. 1647214 -  -3.3  -3.92641   AAGCGGATGCAGAAA             CTCAGGC GATT GCCGAAG              CATTGCTGGAGAAAT  55 51
SH02_RS08160 1645393 .. 1645421 -    -9  -3.96148   GTCGGCGAGCATAAA       TGT-CGGCATTCC TCAC GAAATGCCGGACA        ATTTACGGGGTTTAT  80 56
SH02_RS08155 NONE
SH02_RS08150 NONE
SH02_RS08145 NONE
        artM 1642197 .. 1642223 - -12.4  -5.74086   AAATGAAATAAAAAA         GACGGACAAC TTAGTGG GTTGTCCGTC         TTCATTATAAGAATT 100 168
SH02_RS08135 1641150 .. 1641163 -  -9.5   -5.5604   TGAAGCAATAAAAAA               GCCGC ATGT GCGGC                TTCAGATTGCTGACA 100 206
SH02_RS08075 1631960 .. 1631992 -  -6.9  -5.40625   ACAGCACAGAAAAAA      TCAGTAAAGCCCTCA ACG CGAGGGCTTGTCAGA      CGATCAGGCGTCCAG  89 29
SH02_RS08065 1629485 .. 1629521 -  -3.7  -5.60689   TTAGATAACAAAAAA    CCCATCAACCTTG AACCGAAATGG CGGGGTTGATGGG    CTCCACAAAATGGGG  89 138
SH02_RS08055 NONE
SH02_RS08050 1626727 .. 1626744 -  -3.5  -3.31799   GACAATTTTTCATAA             TCATTTC GCCT GAAATAA              TGCAGCGGGTTAATT  49 97
SH02_RS08045 1626411 .. 1626437 -  -8.7  -5.47399   CGAAGGGTAAAAAAA         TGCCTGACTGC TTTGT GCGATCAGGCA         TTCTCGAATTAATGG 100 34
SH02_RS08035 1624249 .. 1624273 -    -3  -3.02461   TAATCCCTCTGAATA         GTTATTGAAGCG AGC CGCT-CAATA-C         TACACTTTTTAGCAG  44 44
SH02_RS08030 1623441 .. 1623465 - -12.1  -3.30159   TTAATCTTCTGATAA          CCGGATGGCGC GAA ACGTCATCCGG          TTATACGTCATTAAT  89 36
SH02_RS08020 1620988 .. 1621003 -  -2.4  -4.92239   GCAAAAAGGCAAAAA              CTACGG CTGG CCGCTG               GCAACCTGGGGAATC  71 376
        rimO 1618167 .. 1618209 - -11.5  -2.78018   AGCTGGCAGTAATCA TTATTCGCAGGCCGGACAAA TGAT TTTGCCCGGCCTG-AATTAA TTAAACCCGGCTACC  81 26
SH02_RS07965 NONE
SH02_RS07960 1605648 .. 1605666 -  -3.7  -4.11692   CAGCGAGTTTCAAAA             CCCCGCG TCAGG CGCTGGA             CTGCTTACTGGCAGG  60 240
SH02_RS07950 NONE
SH02_RS07945 1601640 .. 1601670 -   -11  -2.74012   TGATGATGTGAATGA       TTTAGCCCGGCGAC GAC GCCGCCGGGCCGAG       GAGATTACAGCATAT  77 30
SH02_RS07940 1600687 .. 1600705 - -11.7  -4.43173   AAAAAGAAGGGAAAA             CCGGAGC GCACG GCTCCGG             TAGAGAGGTCAGCTG 100 34
SH02_RS07935 1599117 .. 1599141 -  -8.5  -3.79633   GACAAATGCAAAATA          GCCTGATGCGC TAC GCTTATCAGGC          CTACGCAGTACCTGC  75 181
SH02_RS07925 1596285 .. 1596303 -  -8.8  -5.63517   CTGGCAAATAAAAAA             GGCGGATT ATG AGTCCGCC             TTTTGCTTTAAGTTT 100 47
SH02_RS07910 1594351 .. 1594370 - -10.7  -3.12402   GAAAGCAGGAGTGAA            GCGGCGT ACCGCG ACGCCGC             TATTTATCGGAAGGT  79 25
SH02_RS07905 1592488 .. 1592505 -  -8.4  -5.36441   TGGTGATATAAAAAA             TCCGCC TCTCGG GGCGGA              TTTTTGTTTTTAAGG 100 35
SH02_RS07895 1590673 .. 1590702 - -16.7  -3.96827   AAAAGTAGCGAGAAA       TTCTGCATGGTTA TGCA TAACCATGCAGAA        ATGTAAATTTAATTA 100 34
SH02_RS07890 1589847 .. 1589867 - -13.3  -5.07652   GGCTGCAAAACAAAA            CGGCCTCCT GTC AGGAAGCCG            CTTTTATCGGGTACT 100 67
SH02_RS07885 NONE
        glnH NONE
        glnP 1587966 .. 1587977 -  -4.4  -2.95448   TTAAATTCAATCACA                GGAT TTTC ATCC                 TTCTTTCCAGACGAC  47 9
        glnQ 1587102 .. 1587121 -  -6.4  -3.30006   AGGAAGGGATATTAA            GCAGGTTG CTGA CAACGTGC             GGGCTTTTTTGCCGG  59 146
SH02_RS07865 1584720 .. 1584737 -  -5.5  -3.15544   CTGGACCTTTATGAA             CGACGAGC AGC GC-CGCCG             TTTTGTCAATCGCCA  53 44
SH02_RS07855 1583261 .. 1583282 -  -7.3  -4.48903   CAAAACAGACGAAAA           CTGCATCCA GAGG CGAATGCAG            TTACGTTGGTGGGGT  78 40
SH02_RS07850 1580725 .. 1580742 - -12.7  -4.58283   CAATTTCTCCAAAAA             GTGGGGC CTGC GCCCCAC              ATCTGAATCAGAAAT 100 33
SH02_RS07845 1580031 .. 1580042 -  -2.2  -2.73364   CGGGCAGTTCAAGCA                TCAG ATCT CCGA                 CCATTCCCGCAGCAG  40 14
SH02_RS07840 NONE
SH02_RS07835 1578944 .. 1578965 - -13.7  -5.81412   GCCAGCTAAAAAAAA           GCCCGTCCA GTGG CGGACGGGC            AAACAAGGGTAACAT 100 226
SH02_RS07815 1573654 .. 1573691 -  -6.9  -4.86033   AAACCTGCAGAAAAA   CCGTCTCGCCGCCTCGGC GAT GCCAAACCGGC-AGGCGA   ACAACAACGTCGCCG  85 303
SH02_RS07805 NONE
SH02_RS07800 NONE
SH02_RS07795 NONE
SH02_RS07790 NONE
SH02_RS07785 1566128 .. 1566140 -  -4.8  -3.54475   TTCTTCAGGAGAGAA                GCCA TGAAG TGGC                AACAACGTGTTCGTG  53 388
SH02_RS07775 NONE
SH02_RS07770 NONE
SH02_RS07765 1562784 .. 1562794 -    -4  -3.31144   GGCCCATTTGGATAA                 TAAG TTG CTTA                 ATGATTGTGTTATGG  49 274
SH02_RS07725 1558171 .. 1558191 -  -8.3  -2.64616   CCTGGAGTCAGATTA            TCCGCGCTA CAG TAGCGCAAA            TTGCGGGGAAACAGC  63 225
SH02_RS07720 1557086 .. 1557110 -  -8.5  -3.79633   GACAAACGGAAAACA          GCCTGATGCGC TAC GCTTATCAGGC          CTACATTTTCTCCGC  75 155
SH02_RS07690 NONE
SH02_RS07685 1548901 .. 1548927 - -13.8  -2.53759   AATACCTTTAAGTGA         TACCAGATGGCA TTG CGCCATCTGGCA         GAGTGATTAACTAAA  93 32
SH02_RS07680 1547462 .. 1547473 -  -7.2  -3.30124   CCGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCAAATAG  64 51
SH02_RS07660 1541029 .. 1541043 -    -7   -4.7373   CTACTGCATGAAAAA               GGCCGC TAT GCGGTC               GGGCAGGGACCAATG  85 105
SH02_RS07650 1539106 .. 1539126 -  -9.7   -3.2964   AAAGTGTGTCGATAA            CCGCCTGAT TAA ATCAGGTGG            CTATAAATGAACTGG  76 13
SH02_RS07625 1535345 .. 1535376 -  -3.7  -4.30719   GTGTTTCATAACAAA      TTGTCAACACGCT TAGCAC AGCGTGGCGATAA       TCACGCTGTCGGCAT  63 6
SH02_RS07620 NONE
SH02_RS07615 NONE
SH02_RS07610 NONE
SH02_RS07605 NONE
        galM 1529275 .. 1529291 - -10.1  -4.14193   ACAATATGAGATAAA              GCCCTCA TGA CGAGGGC              GTAACATTACTCAGC  88 32
        gpmA 1528299 .. 1528319 -  -8.3   -5.5112   GTTAGCAACAAAAAA            GCCGACT CACTTGC AGTCGGC            TTTCTCATTTTAAAC 100 50
SH02_RS07585 NONE
SH02_RS07580 1526397 .. 1526416 -  -9.3  -4.78661   AGTGAAAAATTAAAA            GGGAGAG ACTCCG CTCTCCC             ATTATTGGCTATTTT 100 47
SH02_RS07575 1525347 .. 1525377 - -15.5  -3.15544   CCGGATGTGGATCAA       CAGCGCACGTGAA AGAGG CTCACGCGCGCTG       TCCCATTAATGGTGA 100 31
SH02_RS07455 1506272 .. 1506283 -  -2.2  -4.60924   GAAATGTTCGAAAAA                GATC CGCA GACC                 GAAGCGATCGTGATG  66 396
        gltA 1494632 .. 1494659 - -12.8  -4.99035   TTAGGCATATAAAAA        TCAACCCGCCAT ATGA ACGGCGGGTTAA         AATATTTACAACTTA 100 52
SH02_RS07395 1493702 .. 1493719 -  -9.8  -3.76781   AAATATTTTATGAAA             GGCGGC GATGAT GCCGCC              AAAATAATACTTATT  84 36
SH02_RS07390 NONE
SH02_RS07385 NONE
SH02_RS07380 1489386 .. 1489413 - -13.6  -3.35522   CAATTTTCTGAAAGA        GATGCCCTTT-CC GGC GGCAAAGGGCATC        ATGGTAAATCAGTTA 100 34
SH02_RS07375 NONE
SH02_RS07345 1482523 .. 1482564 - -10.2  -3.46936   AAATTGCAGGAAATA CGTAGGCCTGATAAGACGC GTCAA GCGTCGCATCAGGCAT-CG GTGCTGGCCTATTAA  80 37
        kdpF NONE
SH02_RS07285 NONE
SH02_RS07280 1466497 .. 1466510 -  -8.1  -2.65766   GTAAACCTCACACCA               GACCG CAAA CGGTC                AGCAGTAAATCAATG  60 4
SH02_RS07275 NONE
SH02_RS07270 NONE
SH02_RS07265 1462499 .. 1462518 -  -6.4   -5.0916   TGTTTAAGATAAAAA            GCCGTATT TATT ATTACGGC             TTTAATTAATAAAAG  87 64
SH02_RS07255 NONE
        potE 1458410 .. 1458429 -   -10  -4.46072   GCCAACAAACAGAAA            GGGCGATC ATTC AATCGCCC             TTTTTTACTTTGTTT 100 43
SH02_RS07245 1458168 .. 1458178 -    -4  -2.61322   ACATTTTTTAAATAT                 TAAG TTC CTTA                 TATTTGAATAAAAAA  45 69
SH02_RS07240 1457128 .. 1457140 -  -6.9  -2.53822   CTTACCTGATAATAC                CCGCC GCT GGCAG                TTGTCAGGCGGGAAC  52 333
SH02_RS07220 1453427 .. 1453448 -  -7.9  -2.94232   TTCGGGGGAAACAAT           CAGCCAGGC CTCT GCCCGGATG            GATAGCGCGCCATAA  62 116
SH02_RS07215 1453068 .. 1453081 -  -2.3  -2.90227   GCGGAATCAGCAAAC               GAGCA GGAC TGCAC                ACTGTGCTACATGAA  41 50
SH02_RS07210 1452403 .. 1452430 - -16.4  -3.19463   GGCATTATCTATTAA        TACGGCGTAGAC ATGA GTCTACGCCGCA         TCACATCAGGCATTG 100 31
SH02_RS07200 NONE
         fur 1451664 .. 1451681 - -11.3  -5.24129   CCCTTGCATAAAAAA             GCCAACC CGCA GGTTGGC              TTTTCTCGTTCAGGC 100 45
        nagB 1444278 .. 1444301 -  -8.9  -3.08726   GATTTTAAAAAATAT          TGCCCTGAGC AAGGA GC-CAGGGCA          GGGATAACAATTACA  69 36
        nagA NONE
SH02_RS07160 1441841 .. 1441854 -  -3.9  -3.37975   ATGGACTACCCAGAA               TATTG ACAA CAATA                AGCGCCACTATAAAA  49 46
SH02_RS07155 1440735 .. 1440749 -  -7.8  -5.40072   GCTTGTTTAAAAAAA               TGCCGC AAA GCAGCA               CTGTGCGCAAGCGAT 100 351
        asnB 1438974 .. 1439007 - -16.8  -2.79557   AAGCACCTCAATAAC     TGAAACAGCCCCGG ATTTCA CCGGGGCTGTTTCG      CATTTCTTACTTATA 100 32
SH02_RS07145 NONE
SH02_RS07140 NONE
SH02_RS07135 NONE
SH02_RS07130 1438227 .. 1438243 -    -3  -3.33815   ATGTGCTCTAACCAA             CTGAGCT ACGT AGC-CAG              ATTGTTTCTTCGATG  47 39
SH02_RS07125 NONE
SH02_RS07120 NONE
SH02_RS07115 1437905 .. 1437920 - -10.4   -5.1417   GCAGAAAAGCAAAAA              GCTCGC CGAA GCGAGC               TTTTTTAATGTGGCT 100 36
SH02_RS07105 1435002 .. 1435027 -  -9.7  -5.51046   TAAAGAGAGAAAAAA         CAAGGCCCACCG GAA CGGCAGGCC-TG         AGAATTACGGCTGAT 100 30
SH02_RS07100 NONE
SH02_RS07095 1433321 .. 1433344 -  -8.8  -4.43477   GTTAGTTAATCAAAA          CGCCGTCGTT AATC ACCAACGGCG           GGGACGTCTGCCAGT  93 56
SH02_RS07090 NONE
         lnt 1430555 .. 1430573 -  -6.1  -3.05463   ACCTTCCTTAGGTAA             CATTTAG TTTGG CTAAATG             TAAAGATATTGCTGT  56 296
SH02_RS07080 1429451 .. 1429462 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH02_RS07075 1428190 .. 1428217 - -16.4  -5.26316   CTACTCCAGAAAAAA        GAGGGTAGCAGC GTTA ACTGCTACCCTC         GAAGATTGTTACCCA 100 148
SH02_RS07070 NONE
SH02_RS07065 NONE
        artP NONE
        rihA 1424929 .. 1424966 -  -9.3  -3.77089   AAAAAGAGATAAACA   GATTAAGACCACC-CAGG TAA CGCGTGGTGATCTTAATC   AATGACGTGTGTTAA  81 37
SH02_RS07050 1423018 .. 1423037 -  -2.8  -3.21416   GAGCCGGAGGATGAA            GATGTCGA TGAG CCAACACC             TGAAAATCATGAAGA  45 212
SH02_RS07035 1420032 .. 1420042 -    -4  -3.58905   ACGCGTGATACAGAA                 CATA CCT TATG                 GCCATTATATCTAGT  53 336
SH02_RS07020 1417035 .. 1417058 -  -7.4  -2.72851   CAATAAAGAGAATAT          GGGCCGAATGA AAT TC-CCCGGCCC          TTGTTTTTATCTCTA  58 38
        leuS NONE
SH02_RS07005 1413098 .. 1413109 -  -2.2  -3.28712   TTGTTCCGGGTACAA                CCGA ATCA TCAG                 TTACCCAGCGTGGTG  45 22
        holA NONE
SH02_RS06995 1411428 .. 1411442 -  -2.8  -2.90075   CCCTCCGTAACGACA               GGTATC AGC GATACA               AGCCTTGTTGGTTAA  42 15
SH02_RS06990 1410637 .. 1410653 -  -6.5  -3.53343   AATCGGCTTTCGAAA              GTGGGCT ATC ATCCCAC              CCCGCGCCGCAGATT  61 169
SH02_RS06985 NONE
SH02_RS06980 1409741 .. 1409769 -  -8.2  -2.78679   GTTTTCTACTCAAAG        CTCCCTTATCAC TCACG GTGATAAGGATG        GTTGGTGGTGATGCT  64 5
SH02_RS06975 NONE
SH02_RS06970 NONE
SH02_RS06965 NONE
SH02_RS06960 1404176 .. 1404195 -   -15  -3.50456   GTAATTAAATAGCAA            CTCCCGCC AGAA GGCGGGAG             TTTTTTACTGATGCT 100 83
SH02_RS06955 NONE
SH02_RS06950 1403103 .. 1403124 -  -5.1  -3.24456   AGATATTATGAGTAA           TGACCCAGT GTAA ATTGGGCCA            TTGATGTATGGAATT  55 39
SH02_RS06940 1401836 .. 1401852 -  -2.1  -3.62864   GAAACGGACCTGAAA              GCAGCCA AAG CGGTCGC              GAAAATGTAAAATTG  49 99
SH02_RS06935 1400698 .. 1400715 - -11.3  -5.36441   GTTCGATACAAAAAA             CCCGCTT CAAA AAGCGGG              TTTTTTATCAGACAG 100 62
SH02_RS06920 1399026 .. 1399042 -  -9.4  -4.36729   AGCAAGAATTCAAAA              CCCGCT TAATC AGCGGG              TTTTTTTTGGTCTTT  88 39
        dcuC 1396053 .. 1396075 - -13.4   -4.0162   GGGTGACATGATAAA           GCCGGAGGAA ACT TGCCTCCGGC           ATTACTATTTACTTG 100 34
SH02_RS06890 NONE
SH02_RS06885 NONE
SH02_RS06880 NONE
SH02_RS06875 NONE
        citX NONE
        citG NONE
SH02_RS06860 1386559 .. 1386586 - -18.5  -5.42265   TTAAATCATAAAAAA        GCCCGCCAGGT GGGCTT ACCTGGCGGGC         GTGATGATTTATTCA 100 57
SH02_RS06855 1385526 .. 1385548 - -12.7  -5.11836   ATACCCAAAAGAAAA           CCCTCACCG TCAGG CGGCGAGGG           TTTAACTCACATGAT 100 175
SH02_RS06850 1385004 .. 1385023 - -12.2  -3.53811   CTGATTTTGCGTAAA            GAGGATGC GAGT GCATCCTC             TGGGCAAAGCGAGTT  91 60
SH02_RS06845 1384399 .. 1384424 -  -7.5  -3.75153   GGTTTTGAAGCGAAA         GGCAGCACCAC GGAA ACGGTGCTGAC          TAACCTGAAACTGGA  69 432
SH02_RS06835 1382893 .. 1382920 - -14.8   -4.7373   TTATGGCATTAAAAA        GCCCCGCCGGGA TGGC TCCGGGCAGGGC         GGGATACTTATTCTG 100 45
        dsbG 1379236 .. 1379246 -  -3.2  -4.08692   TAAGTTTTTCTAAAA                 TAGC ACA GCCA                 CTTAGGGCAGAGCGA  58 107
SH02_RS06815 1378078 .. 1378090 -  -5.5  -3.09202   ATAGACATCTGAAGA                CGCTC TCT GAACG                TTACAGGGTGATCAG  53 152
SH02_RS06810 NONE
SH02_RS06805 1375898 .. 1375914 -  -3.5  -3.01712   CCTTTTCGGTGAATA              CCCCGGC ACA GCTGGCG              CTTGCTGATATGCTA  46 359
SH02_RS06795 1373629 .. 1373640 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTCA CGCC                 GCATCCGGCACTCTT  64 275
SH02_RS06755 1365052 .. 1365074 -  -3.4  -3.12351   GCGTCCGACAGTTAA           TGCTTAAAAC AGC GCCTTAAGCC           TATCCAGCACTTGCA  46 6
SH02_RS06745 NONE
SH02_RS06740 NONE
SH02_RS06735 1360861 .. 1360873 -  -7.7  -2.98789   ATCCAGAAAACAGGA                TGCCA TGA TGGCA                GACCACTTAGTTTAA  62 37
SH02_RS06710 1351695 .. 1351724 - -14.3  -3.30124   TTGTAGGCCGGATAA       GGCGTTCACGCCG CATC CGGCATGAACGAC        GCGCACTTTGTCAAC 100 56
SH02_RS06705 1350702 .. 1350728 -  -3.6  -5.34365   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  80 257
SH02_RS06685 1347703 .. 1347714 -    -3  -3.29043   AAGGGTGTTTCATAA                CATT GTTA AATG                 TAAGTTAAAACACCA  47 77
SH02_RS06680 1347436 .. 1347450 -  -5.6  -2.71364   GTATGCCGCGAAGTA               CGGCGA TAA TCGACG               TTTAATCCGCCAGCG  52 27
SH02_RS06675 NONE
SH02_RS06670 1346245 .. 1346262 - -14.1  -3.50588   ATCTGAGAGGAAATA             GCCGGGC AGAT GCCCGGC              AAGAGAGAATTACAC 100 35
SH02_RS06665 1344881 .. 1344907 - -16.7  -3.63895   GTCAACCATCCGAAA         CCGCTCTCATC CATTC GATGAGAGCGG         TTTTTTTAATTACTG 100 35
SH02_RS06635 NONE
SH02_RS06630 NONE
        nfrB NONE
SH02_RS06620 NONE
SH02_RS06615 1328555 .. 1328581 - -13.8  -3.44487   GATGAGAGCGAAAGA         GGTAAGCCAGGT CGT ACCCGACTTACC         TGGAGGAGATTTAAT 100 36
SH02_RS06610 NONE
SH02_RS06605 1327456 .. 1327477 - -10.9  -2.78465   ACTGAGACACATAAG           GCCTCGCAA TGGC TTGCAAGGC            TTTACATGTTTTGAG  77 86
SH02_RS06600 1325793 .. 1325821 -  -3.2  -3.16564   CTCTTATTCTATCAA       TGTCGTAGCC-CA GAAA TGTGGCTATAACA        GTACTTCATATTTCA  45 385
SH02_RS06585 1323415 .. 1323431 -  -2.1  -5.80003   GGAAGAAACAAAAAA              CAGCCTG ATG CAGGTAG              CCAGTGAGCATATTG 100 247
SH02_RS06570 1321478 .. 1321532 - -11.6  -4.09511   AATACCCCCTGAAAA GAAAGGAAACGACAGGTGCTGAAA GCGAGCT TTTTGGCCTCTGTCGTTTCCTTTC TCTGTTTTTGTCCGT 100 225
SH02_RS06555 1320662 .. 1320673 -  -4.4  -4.13561   TTCGTGTAAAAAATA                TGCT TAAT AGCA                 CCATTTCTATGAGTT  62 327
SH02_RS06545 NONE
SH02_RS06540 1318494 .. 1318513 -  -9.2  -4.88129   AAAAATTATTAAAAA            TGGGGCGT TGAG ACGCCCCC             AAAAATAAAGGGTAA 100 371
SH02_RS06450 1310162 .. 1310177 -  -3.2  -3.12999   GCAGCGGAGACTGAA              GCGCCGC AAT GCAG-GC              TTGCCGTGTTGTGAG  46 68
SH02_RS06445 1308817 .. 1308847 - -11.8  -2.60079   TGACCGTATAATTCA       CGCGATTACACCGC ATT GCGGTATCAACGCG       CCCTTAGCTCAGTTG  73 115
SH02_RS06435 1307964 .. 1307978 -  -4.4  -3.54743   TATGATCAATTATAA               TTAATA TTA TATTAA               TTCGTATAATTTGGC  52 17
SH02_RS06405 NONE
SH02_RS06400 1300753 .. 1300774 - -15.9  -3.95836   AGTCTGAAAAGAGAA           CCGGCCTGT TGAT ACAGGCCGG            GAAAGGGATCAGGCA 100 34
SH02_RS06395 1299656 .. 1299666 -  -6.8  -3.70446   CTACAGCGAAGAGAA                 CCTG AAG CAGG                 CGCGTGCGGCGCTGG  63 513
SH02_RS06385 NONE
SH02_RS06380 1297234 .. 1297244 -  -2.4  -4.08394   ACATGCGTCTTAAAA                 CTCC TGT GGTG                 CACAACTCTCGGCTT  55 121
        purE NONE
SH02_RS06370 1295546 .. 1295578 - -10.6  -2.57881   CAATTGGTGCACAAT      GCCTGATGCGATGC TTGAC GCATCTTATCAGGC      CTACAATGGGTACCG  74 96
SH02_RS06345 NONE
SH02_RS06340 NONE
SH02_RS06335 1287321 .. 1287340 - -13.6  -5.63504   AATGTTACAAAAAAA            GCCACGGT ATAA ACCGTGGC             AAAATCCAACATAGC 100 50
SH02_RS06285 1275372 .. 1275397 -  -4.7  -2.94412   GTGAACCTCAAATCA         GCTTGCGCGCTA TTT TA-CGCGCCAAC         GCGCAAGGAAACTTG  50 45
SH02_RS06280 1274164 .. 1274187 -  -2.4  -3.28712   TCTTGTTTTGGATAA          GGATTCGACA CTCA TATCAAAACC           GGTAACTCTCAACCT  45 92
SH02_RS06275 1273565 .. 1273580 -  -6.2  -4.67048   CTATCTGAAAATAAA              TAATCC TTCC GGATTA               AAATAAATTCTTGCC  77 212
SH02_RS06240 NONE
SH02_RS06235 NONE
SH02_RS06230 1261482 .. 1261513 - -10.9   -4.4846   CAATTGAAGAAGAAA      TGATGCGATGCCG GATGCG CAGCATCGCATCC       GGCGTTGTGGTTCAT 100 59
SH02_RS06215 NONE
SH02_RS06210 1258140 .. 1258158 -  -3.8   -4.7497   GCGATGTAGCAAAAA             TTACCGGC CTG ACCAGCAA             AGCCATTCGCTTCTA  73 390
        copA 1252819 .. 1252872 - -10.1  -2.57931   CGTAGGCCGGATAAG GCGTTTACGCCGCATCCGGCATCCG AGCA CCATTGCCTGATGCGACGCTTACGC GTCTTATCAGGCCTA  71 150
SH02_RS06180 1251246 .. 1251257 -  -7.2  -2.98014   AACGAAGCAAGCATA                CGCC TGAT GGCG                 GTCCAAAAAAAAGAG  61 176
SH02_RS06175 1250696 .. 1250719 - -16.8  -3.67976   GGCAGTAATCCGAAA          GTGCCGGATG TTTG CATCCGGCAC           AATGCTTAATCGCGG 100 31
SH02_RS06165 1247565 .. 1247591 - -15.3  -3.09831   GCGACTGTAAAACGA         TGCAGCCAAAG TTTGC CTTTGGCTGCA         ATGAAATCAGTCTTT 100 32
SH02_RS06160 1245579 .. 1245590 -  -7.2  -3.50393   TCGTAGGCCAGATAA                GGCG TTCA CGCC                 GCATCTGGCATTTGG  66 119
SH02_RS06150 1243068 .. 1243101 -  -9.7  -3.66995   GGGAAAAAATATGAA     TATATTCCGGCGC TTAATGCC ACGCCGGAACATA      TCGAAATGATGGCTA  77 60
SH02_RS06105 NONE
SH02_RS06100 NONE
SH02_RS06095 1234030 .. 1234050 - -12.6  -3.18505   GGGTAAAAACGAAAG            GGGGCAAC ATTTA GTTGCCCC            GAGATTGCTAACAAA  93 33
SH02_RS06080 NONE
SH02_RS06075 1225341 .. 1225356 - -11.8  -5.28176   GTTATGCATAAAAAA              GGCCGC TTAC GCGGCC               TTAGTGATTACACGT 100 45
SH02_RS06070 NONE
SH02_RS06065 1224064 .. 1224075 -  -2.2  -4.07568   TCCGGTTGCTGAAAA                TGCG GCAA CACA                 GTAAGACGAAAAGTC  53 162
SH02_RS06060 NONE
SH02_RS06055 NONE
SH02_RS06050 1220722 .. 1220738 -  -5.9   -3.1916   CAAAAAATCCCAACA              TGGCTAA ACT TTAACCA              CAACTGACGTCGCAA  55 476
SH02_RS06040 1219967 .. 1219991 -  -7.1  -3.83026   TGCCGGTACAGCAAA         CCGCCGTGCC GGTTCA GGC-CAGCGG          TGGCGCAACGACTAC  66 138
SH02_RS06030 1218391 .. 1218417 -  -9.5  -5.07053   AAGCACTGCAAAAAA        CAGCCGGACGGT TTTC ACC-TCCGGCTA         TTTTTTTAATTGTGA 100 31
SH02_RS05995 1209695 .. 1209709 -  -8.6  -4.89477   GCTTGAACAATAAAA               GCGTTA TGG TAACGC               CTGCGATTAACCCGG 100 50
SH02_RS05990 1208467 .. 1208489 - -10.7  -3.12351   TTTTGCCAGACTGAA           GAGGTCATA CCAGT TATGACCTC           TGTACTTATAACAAC  79 510
SH02_RS05935 NONE
        ampG 1195971 .. 1195991 -  -4.9  -4.90525   CAATGTGAAATAAAA            CAATTATTT AAC AAATAATTA            TCATTAGAGTGACAA  74 226
SH02_RS05925 NONE
SH02_RS05920 NONE
SH02_RS05915 NONE
SH02_RS05910 NONE
SH02_RS05905 1190903 .. 1190916 -  -8.1   -5.4756   AATGCTAAGAAAAAA               GGTGC CGTA GCACC                TTTTTAATAGAGAGG 100 46
SH02_RS05900 1189159 .. 1189182 -  -3.8  -3.97911   ATCAAAGACAGCAAA          CTGAAAGTGC AGGC GCAAATTCAG           GGCGATGAAATCCGC  58 267
SH02_RS05890 NONE
SH02_RS05885 1186765 .. 1186777 -  -6.3  -3.42069   TGAAGCGGAAGAAGA                GAAGT TCG ACTTC                AGCATTCTCGATAAA  58 421
SH02_RS05875 NONE
SH02_RS05870 NONE
SH02_RS05865 1182342 .. 1182352 -  -2.4  -3.08133   CACTTACTTATGTAA                 GCTC CTG GGGC                 TTCACTCGTTTGCCG  43 110
SH02_RS05860 1180808 .. 1180833 -  -8.3  -3.18681   TCGGAAGTGGATTAA         GCCCGATCGTTC CTG GGACGAT-GGGC         TCGCTGGCAGCGATT  63 475
SH02_RS05825 1176157 .. 1176168 -  -5.8  -4.08767   GCCACTGTTTGAAAA                TCCC TTGC GGGA                 GTGAAAAAGGCGCAA  68 291
SH02_RS05820 1175221 .. 1175241 - -12.6  -4.14257   GTTAACAATCAGAAA            TGCCGGGA ATAAA TCCCGGCA            TTTTCATAATCAGAA 100 35
SH02_RS05780 1168210 .. 1168236 -  -2.8  -4.63218   CGCTGCGTAAGAAAA         GTCAGGCGCTAC GTC ATGGCGGCTGTC         AGGTGCTGTATGCGG  68 248
SH02_RS05750 NONE
SH02_RS05745 1156626 .. 1156647 -  -3.7  -3.48684   TCACAACCACCAGAA           CGGCTAC CAATCACC GTAGCCA            ATAAAGTGATAGCTT  51 107
SH02_RS05740 1155179 .. 1155221 -  -5.5  -5.30189   CACAAGAGTAAAAAA CGTAGGCAATTGGCGCATCA TGCC TGATGCGACGCTTGCCG-CG TCTTATCAGGCCTAC  84 223
SH02_RS05730 1153187 .. 1153201 -  -7.1  -3.30124   TCGTACGCCGGATAA               GACGC GGCAG GCGTC               GCATCCGGCATTAAA  64 54
SH02_RS05690 1148908 .. 1148948 -  -9.9  -4.65182   TACAAAGCAAAGAAA GCCGGACGT-A-ACCG-CAC CGAA GTGGCGGCCTGACGTCCGGC GAAAGTCATCAGGAT 100 34
SH02_RS05660 1143918 .. 1143942 - -10.8  -4.42851   TGAAGAAACTGAAAA          CGCCCAATAA GAATA TTATCGGGCG          TTAAAATATTACATT 100 34
SH02_RS05650 1143150 .. 1143168 - -10.2  -2.78263   ACAATGTAAAACTTA             CTGGCGGC GAT GTCGCCAG             TGCAGCCATAGCGCC  75 4
SH02_RS05630 1139210 .. 1139238 - -10.4  -4.40298   ATCGAAATGAATAAA       GGCAAACTGGTCG CTAT CAACC-GTTTGCC        TTCAGAGTATTAATC 100 39
SH02_RS05615 NONE
SH02_RS05610 1135467 .. 1135488 -  -7.3   -3.4285   TCAGGCAATTTATAA           CGTTGCTGA AACG TCAGCAATG            TATGATGTTGCTACA  61 398
SH02_RS05600 1133889 .. 1133899 -  -6.8  -2.85668   GAGGGGCATAGTATA                 CCTG AAG CAGG                 GTAGGGATGTTTTAC  57 145
SH02_RS05595 1132774 .. 1132790 -  -6.5  -2.73875   GGCGGGGTAATACGA              GAGTGGA CGG TCCCCTC              GCCCCCTTGGGGAGA  55 110
SH02_RS05570 1128075 .. 1128085 -    -4  -3.91488   AATTTGCTCAAAGAA                 TCAT TTT ATGA                 ATTACAAAGCCTTCA  59 121
SH02_RS05565 1126599 .. 1126611 -  -4.1  -3.44051   GTTCGAGCATTATAA                CGAAT GGC ATCCG                CATAGTGCGCTGGGT  52 275
SH02_RS05550 NONE
SH02_RS05545 1124029 .. 1124079 - -16.6  -3.06302   ATCATCTGCATGCAA TATACTATAGGGGGGTATTCTAT ATGTCA AT-GCATACCCCCCTATAGTATA TAACACTGGAGAATA 100 137
SH02_RS05540 NONE
SH02_RS05535 1122548 .. 1122568 -  -7.5  -2.85407   GAGAGTATTAAGAAC            CCCCGCC TGAAGTG GACGGGG            TAAACCTGCGGGAAA  59 41
SH02_RS05530 1121623 .. 1121634 -  -7.2  -3.30124   GTGTAGGCCGGATAA                GGCG TTCA CGCC                 GCATCCGGCAGTCGT  64 48
SH02_RS05485 NONE
        lacI 1110520 .. 1110533 -  -6.7  -2.70932   TGGGGTGCCTAATGA               GTGAG CTAA CTCAC                ATTAATTGCGTTGCG  56 42
SH02_RS05475 NONE
        lacY 1108462 .. 1108473 -  -7.2  -3.28791   ATGTTGGTCGGATAA                GGCG CTCG CGCC                 GCATCCGACATTGAT  64 44
        lacA NONE
SH02_RS05445 NONE
SH02_RS05410 1093389 .. 1093420 -  -9.4  -2.66451   ATCTATTGAAATTTA      TGCCGGATAAAGCG TTCG CGCTGCATTCGGCA       GTTCAGCTTTTCAGC  68 28
SH02_RS05400 1092084 .. 1092105 -  -7.2  -5.31059   AGACCAATGAAAAAA           GCCCACAC AGGGGA GAGTGGGC            TGAAATGGGAAGCTA  95 152
SH02_RS05345 NONE
SH02_RS05340 1079620 .. 1079633 -  -2.3  -3.78909   TAACGATAAAATCAA               GCTGG TTCT CGAGC                TAACGGAACGTAACC  51 459
SH02_RS05330 1078079 .. 1078104 -  -7.5   -4.4009   TGTTATTGCATAAAA         CCGCGCCATGT CTGC ATATGGCGCTG          TTTCTCCTACCTCTT  75 353
SH02_RS05320 NONE
SH02_RS05315 NONE
SH02_RS05310 1071951 .. 1071961 -  -5.4  -4.84914   ATCCAGAGAATAAAA                 TCTG TCG CAGA                 TAAGGTTGTATTAAT  75 207
SH02_RS05305 NONE
SH02_RS05300 NONE
SH02_RS05275 NONE
SH02_RS05270 NONE
SH02_RS05265 1064123 .. 1064146 -  -6.9  -4.56597   GTCTTGCTGTAAAAA          TACATGATT GATATT AATCATGTA           TTTTACCTAAGACGA  76 171
SH02_RS05260 1063004 .. 1063014 -  -3.2  -4.24123   GGAACAATTTGAAAA                 CAAG AAC CTCG                 CTTAGGCCTGTGTCC  58 27
SH02_RS05240 1059550 .. 1059564 -  -5.7  -3.29511   TGGATTTTTCGAGAA               TGGAG GTTAT CTCCA               CTTTACTGGCCGATA  57 168
SH02_RS05235 NONE
        rpmJ 1058856 .. 1058888 - -12.3  -4.26344   ATATCCCCAGGAAAA      TTAATGTTGGTGT TATAAAC ACACCAACATTAA      TCCGATCTGATTATT 100 77
SH02_RS05220 1057263 .. 1057275 -  -4.8  -2.53876   CCCGAGTTGAATTGA                GGAC GTGAT GTCC                CAGTGAGTCATTTTT  47 62
SH02_RS05215 1056615 .. 1056633 - -11.7  -4.24342   CCGTCCAGGAATAAA             GCAGGGG GGCTA CCCCTGC             TGGTACATCAGAGAG 100 42
SH02_RS05210 NONE
SH02_RS05205 NONE
SH02_RS05200 NONE
SH02_RS05195 1050783 .. 1050815 -  -4.8  -3.84619   AAATCGTAAAGAGAA      CAGCGGTACATCGT ATGTA AGAACGTACCGCGG      TTGGCTGGGGAACTT  59 271
SH02_RS05190 1050184 .. 1050214 - -12.8  -2.76189   TAATGCATTGAATGA       TAAAAATGGCGC AAATACA GCGCCATTTTTA       TAGGTTAAAAACATT  91 230
SH02_RS05180 NONE
SH02_RS05175 NONE
SH02_RS05170 NONE
SH02_RS05165 NONE
SH02_RS05160 1043771 .. 1043787 -  -9.5   -3.2045   AAAAATGCATTAACA              TCGCATT CGT AATGCGA              AGGTCGTAGGTTCGA  67 185
SH02_RS05150 NONE
SH02_RS05145 NONE
SH02_RS05140 1041473 .. 1041490 -  -7.1  -4.33854   ATCAATAAAATTAAA             TCTGTAA TTTA TTACAGA              CTTTCTCGTACAGAA  75 19
SH02_RS05135 NONE
SH02_RS05130 NONE
SH02_RS05125 1038855 .. 1038882 - -12.2  -4.40333   TTGAAACAATACAAA        TAA-GGCCTTCTC ACT GAGAAGGCCATTA        CCGACTTACAGTTCG 100 31
SH02_RS05115 NONE
SH02_RS05110 1035723 .. 1035735 -  -3.3  -2.83258   AACAGACTGAATAAT                CGGCA TAA TGCTG                GCATGTCCACGCTGG  43 157
SH02_RS05105 1034680 .. 1034702 -  -5.5  -3.41051   CCAGCTCGACCACAA          CGTGCCGTCG TGGC CG-CTGCACG           AGCAGCCCATTCCGG  54 293
SH02_RS05080 1027348 .. 1027364 -  -2.9  -2.59447   GGCGAATGAGAATAT              TTGCCTG CCG CCGACAA              TCAGGTGGTCGGGGA  41 56
SH02_RS05075 1026957 .. 1026970 -  -2.3  -2.76969   TAAGCCATTTTAAAT               GACTC GGAG GTGTC                TGTTAAACCCGTGGC  41 6
SH02_RS05070 NONE
SH02_RS05065 NONE
SH02_RS05060 NONE
SH02_RS05055 NONE
        fbpC 1024254 .. 1024287 -  -9.5  -3.30124   TTGTAGGCCTGATAA     GCGCAGCGCATCAGGC ATT GCCGGATG-GCGGCAC     AAGCGCCTTATCCGG  74 60
SH02_RS05035 1020166 .. 1020194 -  -3.9  -2.90462   AAAGCCAGAAAAGAT       CGGTGG-TACTG GAATAA CAGTATCCAACG        GGGCCGAAGTACGGC  46 498
SH02_RS05025 NONE
SH02_RS05020 1018455 .. 1018475 -  -4.6   -4.6856   CAAATACTGGAAAAA            CCGTCCTG AAAAG CCAGACGG            CAGACGGGCTGTATT  72 301
SH02_RS05000 1015555 .. 1015578 -  -7.4  -5.80727   AAAAATAATAAAAAA          CGGTAGAATC GTGA GATTCCGCCG           TTAATTGCGTATGTT 100 302
SH02_RS04995 1014610 .. 1014633 - -10.2  -2.91398   AACAAATAAAAGGGA          TCCCCGTCGC ATCG GCGACAGGGG           CAGGGAAGTAACAGG  76 55
SH02_RS04990 1013394 .. 1013409 -  -4.6  -4.25283   AGCCGCTCACGAAAA              TCACGC CGCA GCGTGC               GCACCGACACACCAA  66 366
SH02_RS04985 NONE
SH02_RS04980 NONE
SH02_RS04975 1012134 .. 1012159 - -12.5  -5.18371   CCTGATAAAAGAAAA         CCCCGGCAGCC TGCT AGCTGTCGGGG          TGAATTTGCTGGGGA 100 52
SH02_RS04970 1011796 .. 1011816 -  -9.7  -5.06414   CTCCGTCAATAAAAA            CGCCAGC GGCGATG GCTGGCG            TATGGGGATATAAAG 100 79
SH02_RS04965 NONE
SH02_RS04960 1010827 .. 1010842 -  -4.7   -3.6707   ATGTAATACCTCAAA              GCAGA CCGTGT TCTGC               GAACGAATAGATTTG  57 5
SH02_RS04955 NONE
SH02_RS04950 1009800 .. 1009832 - -12.1  -3.90048   TTGTCCGTAAAAAGA      TAACGCGCCTGCC GGGTAGT AGCAGGCGCATTA      CGCAATAGGTAAACA 100 87
SH02_RS04930 1005580 .. 1005604 - -10.7  -2.78679   CGGCGTGAGTGAAAT          GTGCCGGATGC ATC ACATCCGGCAA          TATTCATTAAAACTG  77 32
SH02_RS04910 1001557 .. 1001588 - -17.3  -3.86776   TAATGAAGGATGAAA      CTGCCGGAAGGCG ATTAAA CGCCATCCGGCAG       CAAATCAAATAATTA 100 38
SH02_RS04870  995656 ..  995667 -  -7.2  -3.37796   CGGTAGGACGGATAA                GGCG TTCA CGCC                 GCATCCGGCAGTTGT  64 58
SH02_RS04855 NONE
SH02_RS04850  993179 ..  993191 -  -3.3  -2.91429   TAAAACGGTTACACA                CGCCA GGA CGGCA                AAATGGATCCCAAAT  44 137
SH02_RS04845  992375 ..  992396 -  -8.7  -3.91084   TGACGGGCAATGAAA           CCTGGCAAA AGAT TATGCCAGG            CGAATGGCGCTTATT  74 36
        fadE  988175 ..  988192 - -12.7  -4.56367   TAGCGGATAAAGAAA             CGGAGCC TTTC GGCTCCG              TTATTCATTTACGCG 100 34
SH02_RS04820  986486 ..  986499 -  -3.8   -3.6869   CACAGCAATCCGAAA               CCAC TGGCAC GTGG                AGAATAAGCTGCACA  53 287
SH02_RS04810  986066 ..  986079 -  -2.4  -3.17194   ACTCTTTTAATTTAA               CATG TAAACG CATG                GTTAATCCTCATATC  43 34
SH02_RS04805  985470 ..  985500 - -10.6  -3.19657   ATCAATAATAAATTA      TATCTGCCGCCAG GAATTT CTGGCGGCA-ATA       ATACAAAATTCTTTG  77 124
SH02_RS04785  982832 ..  982859 -  -9.1  -2.55021   AAACAAGCCACGAAT        TCGCCAGGCGG TTGGAG CCACCCGGCAA         TGTCGTAAACCACAG  65 43
SH02_RS04775  981337 ..  981351 -  -4.2  -3.42996   GACGACCGATCATAA               CGGC GAACGGA GCCG               ATGACAAGAAAGTTT  52 43
        mltD  979900 ..  979920 -  -9.7  -5.72622   GGCATAAATAAAAAA            GGCACCG GGGGAAT CGGTGCC            TTTTTATTATCTGGT 100 44
SH02_RS04755  977244 ..  977273 -   -10  -5.47159   GCCGAAGATAAAAAA       GCGATCGCCGCA CTGGAT TGCAACGACCGC        CTGGTTAGCCCGGAA 100 61
        metN NONE
SH02_RS04705 NONE
        metQ  967397 ..  967420 - -14.6  -3.23975   AGCTTGTAAAAATGA          CAAGACGGGC AAGC GCCCGTCCTG           AATGATATTACAAAT 100 60
        rcsF NONE
SH02_RS04690  966147 ..  966165 -   -11  -3.42056   AGTTGGAAGGTAGAA             CAGGCTCA AGG CGAGCCTG             GGACAAAAAAAAGTG  83 89
SH02_RS04685  964369 ..  964389 - -13.3  -5.47821   ATCCATGTAAAAAAA            GGGCCCTGA AAT TCAGGACCC            TTTCTGGCATCAGCC 100 35
SH02_RS04680  963410 ..  963421 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCAATGGT  64 125
SH02_RS04660 NONE
SH02_RS04655  960978 ..  961010 -   -12  -3.76952   CTTAGTTAAGTGAAA      GCCGGATAAGACGC ATCAA ACGTCGCATCCGGC      GAAAGTCAATCAGGA 100 35
SH02_RS04550  936032 ..  936047 - -11.8  -5.15634   TATCGCATTAAAAAA              GCCGGC ATTC GCCGGC               TTCATCTTATTCGTC 100 32
SH02_RS04545 NONE
        dapD  932432 ..  932454 - -10.5  -5.40474   ATCCCTGCAAAAAAA           TCGGGCAGC GTCGT GCTGCCCGT           GTGCATACTTTTAGT 100 36
SH02_RS04535 NONE
SH02_RS04530  930723 ..  930746 -  -4.4  -3.35813   TGGCAGGCCAACGAA          CTGGCGCGACC GCT GG-CGCGGCTG          AAAACGATGGACAAT  51 330
SH02_RS04510 NONE
SH02_RS04505 NONE
SH02_RS04500  924144 ..  924158 -  -5.6  -4.68994   ATGACCATCGAAAAA               CAGGGC GTT GGCCTG               GTGGTTGATCCGATG  75 210
SH02_RS04485  920845 ..  920878 - -10.9  -2.60079   TTACGCGACAACGGA     TGCCCGATGCGACGC TGGC GCGTCTTATCGGGCC      TACAAACGGCCCCGA  76 91
SH02_RS04460 NONE
SH02_RS04455  913759 ..  913772 -  -2.4  -3.03124   TGTGACCGCCGAAGA               GATG GCGCTG CATC                AGCCGAAGTCGGTAA  42 190
SH02_RS04430 NONE
SH02_RS04425 NONE
        dksA  906108 ..  906126 - -11.7  -4.81306   TTGAACAAAAAATAA             GGCGGGA GCATT TCCCGCC             TGTGGTAAACGTGAT 100 54
SH02_RS04415 NONE
        pcnB  903727 ..  903760 -  -8.1  -3.08813   GCCTATGGCAATATA     CGCCACTGTCATGCGG TAC CCTCACGAC-GTGGTG     CGCGTTTGCGTGGAC  63 0
SH02_RS04405  903070 ..  903094 - -10.3  -4.21141   TTTGAACAAATTAAA          TTTACTTAATT CAA AATTAAGTAAA          AATAAGTTCACAAGT  91 190
SH02_RS04400  902236 ..  902271 -  -6.4  -4.44548   TAGAGTTAATTAAAA    CAGGGAATAATA TAAAATAGAAAT TATTATTCCCTG     TATATTCATTCAATC  74 59
        ecpD NONE
SH02_RS04390 NONE
SH02_RS04385 NONE
SH02_RS04380 NONE
SH02_RS04375 NONE
SH02_RS04370  895675 ..  895724 -    -8  -2.70932   TGGTGGGGGCAATGA TTTAT-CCGTAGCAGCACTGCCA GAAGG TGACAGTGCTGCTACGTTATCAG GGATAGGTTACCTGG  60 22
        panB NONE
        panC  893915 ..  893945 -   -12  -3.51232   CGTGGGGTAAATTAA       TAACTGGCGCCA TCAGCCG TAGCGCCAGTTA       AGTATTACGCCAGCT  91 30
SH02_RS04350  892282 ..  892313 -  -5.1  -2.62263   ATTCGCTGGAGACGA      TGTC-GCGGCTGGT GAGTA ACCAGCCGCAGGGA      TAACAATCAAGCAAC  49 32
SH02_RS04325  887756 ..  887769 -  -2.4  -3.02511   TCGACTCGGGGAATA               CACT GTCGAA AGTG                CGTGAGATCTTAAGC  42 270
SH02_RS04315  884660 ..  884679 - -13.6  -3.36515   CCGTATTCGGAAATA            TGCCCGGA TCTC TCCGGGCA             TTAAACTGATGACAA 100 187
SH02_RS04305  882529 ..  882550 - -10.9  -3.17362   ACATAATAGCTAACA           TTGACCGCG GATG CACGGTCAA            TATTTCTACAAAAAG  79 51
SH02_RS04300 NONE
SH02_RS04295  880762 ..  880789 - -17.8  -4.59982   GCAGAAGTAAATAAA        TCTGGCGGAGCC TGGG AGCTCCGCCAGA         GCCGTTAAACAGCTG 100 30
SH02_RS04280  875378 ..  875394 -  -6.5  -5.26875   CCGGCAATTAAAAAA              GCGGC TAACCAC GCCGC              TTTTTTTACGTCTGC  89 44
SH02_RS04255  866148 ..  866176 - -10.2  -2.84325   TTGGTGTAAAGATTA        TTGCCCTCACCC TGTAC GGGTGAGGGCGT        AGAGAGATTAATGCG  75 33
SH02_RS04240  863723 ..  863742 -  -7.1  -2.64794   GGGAAGGGGAGATTA            TCCGCCC GCGATG GAGCGGA             TAAATCTGTCAACTA  52 41
SH02_RS04230 NONE
SH02_RS04225 NONE
SH02_RS04220  860278 ..  860290 -  -3.3  -3.72893   GAGTCTGCGATGAAA                CGTCA CGT TGGCG                GCGTTGCGGAATATC  53 263
        coaE NONE
SH02_RS04205 NONE
SH02_RS04200 NONE
SH02_RS04195  857260 ..  857277 -  -4.1  -4.62069   TCGCTATTTGAAAAA             CTGGAAT ATGA ATTCCCG              GACAGGCATATAACA  70 318
SH02_RS04070  829586 ..  829603 - -14.1  -5.60993   TCGGGCATAAAAAAA             CCCGCGC AATG GCGCGGG              TTTTTTGTTTGACTG 100 50
SH02_RS04065  827967 ..  827979 -  -3.3  -2.62515   AATTCTTCGACATCA                CACGG TTT CCTTG                TTGTTTTCGTTGTGT  42 10
SH02_RS04060 NONE
SH02_RS04055 NONE
        leuD  824827 ..  824846 -   -15  -3.64599   GGACGATAGCGGAAA            GCCCGGTC ATTT GACCGGGC             AAGGGGATTAATTCA 100 33
SH02_RS04035  821513 ..  821537 -  -7.2  -3.64192   AAAAAGAGTGGCAAA          GGACTTGAGA AGGAG CCTCAAATCC          CTTCGCCGGCGTTAT  68 138
        tbpA NONE
        thiP NONE
        thiQ  818183 ..  818209 -  -6.5   -4.3898   ATCAGGCCTACAAAA         CGCACTACCCG TAGGT CGGATAAGGCG         TTCACGCCGCATCCG  72 51
SH02_RS04005  814361 ..  814371 -  -2.4  -2.87132   TCGTGTCCTTATAGA                 GTCG CAA CGGC                 CTGGGCAGCCTGTGC  41 8
SH02_RS04000  812796 ..  812809 -  -8.1  -3.50393   GTGTAGGCCAGATAA               GACGC GTCA GCGTC                GCATCAGGCGTTACA  68 57
        araD  811807 ..  811827 -  -8.3  -5.19261   AAATCCATCAAAAAA            CCAGGCT TGAGTAT AGCCTGG            TTTCGTTTGATTGGC 100 59
SH02_RS03990  809443 ..  809459 -  -2.1  -3.63744   TTTTTGCTCAAAATA              GCCCAAG TTG CCCGGTC              ATAAGTGTAGCAAAA  49 1
SH02_RS03985 NONE
SH02_RS03980  805625 ..  805640 - -10.4  -5.72622   GGCAGAAACAAAAAA              TCCCCG GACT CGGGGA               TTTATGTACAAGAGG 100 78
SH02_RS03965  800729 ..  800739 -  -8.2  -3.35813   TTCCATTTCAATTAA                 CCGC ACT GCGG                 ATTACGTGGTAAATC  69 47
SH02_RS03960 NONE
        pdxA NONE
        ksgA NONE
        apaG NONE
        apaH  795943 ..  795956 -  -2.3   -4.4572   AACACCTTAAATAAA               CCCGT GATT ATGGG                CCGCCATACCTGGGA  63 455
SH02_RS03895 NONE
SH02_RS03890  785216 ..  785229 -  -8.1  -3.30124   CCGTAGGCCTGATAA               GACGC ATCA GCGTC                GCATCAGGCAGCGCA  66 46
SH02_RS03885 NONE
        caiC NONE
SH02_RS03875 NONE
SH02_RS03870  780566 ..  780579 -  -5.9  -2.68775   CGATGAGCAAATTTA               CGCGC GCCT GCGCA                ATAACAGTCGGGAAA  50 233
SH02_RS03860  780098 ..  780117 -  -7.8   -3.3449   ATCGAATAACTAATA            CGGTTCTC TGAT GAGGACCG             TTTTTTTTTGCCCAT  66 0
SH02_RS03845 NONE
SH02_RS03840  775195 ..  775208 -  -3.9  -3.65224   ACTTGATCTCAATAA               TTTGT AACC ACAAA                ATATTTGTTATGGTG  53 60
        rpsT  766777 ..  766790 -  -9.5  -5.65177   ACAGGCATAAAAAAA               CCCGC TTGC GCGGG                CTTTTTCACAAAGCT 100 56
SH02_RS03790  765667 ..  765681 -  -2.8  -2.72799   GGGGGAGATAGATTA               GTTGTA CAT TACCAC               GATTTTGACTCGGCT  41 161
SH02_RS03775  762587 ..  762613 -  -3.6  -5.34365   GGAGAATAACAAAAA         TGGTCATCTGGA GCT TACAGGTGGCCA         TTCGTGGGACAGTAT  80 169
SH02_RS03755 NONE
SH02_RS03750  756517 ..  756527 -    -4  -3.23975   ATTCCTCAAAAATCA                 TCAT CGA ATGA                 ATGGTGAAATAATTT  51 147
SH02_RS03745  755905 ..  755922 - -12.7   -5.8187   TAGCGAATAAAAAAA             TCCCCCC GAGC GGGGGGA              TCTCAAAACAATTAG 100 37
SH02_RS03730 NONE
SH02_RS03725  751545 ..  751564 -  -7.8  -4.13654   CCGCTAAATGACAAA            TGCCGGGT AACA ATCCGGCA             TTCAGCGCCTGATGC  76 150
SH02_RS03680  743895 ..  743924 - -13.7   -4.7339   AATAAAGTTGAAAAA       TAAAAACGGCGCT AAAA AGCGCCGTTTTTT        TTGACGGTGGTAAAG 100 45
SH02_RS03655  738710 ..  738722 -  -4.7  -3.80573   TGGATTATCAGGAAA                GCCTG TGG CTGGC                GTCTGGCTGGGTCGT  58 98
        yjjX  737070 ..  737094 - -15.7  -2.65298   TTTAGCGAGTACAAC          CGGGGGAGGCA TTT TGCTTCCCCCG          CTAACAATGGCGACA 100 518
SH02_RS03630  733004 ..  733025 -  -2.9  -5.03145   CAAGGTTTGAAAAAA           CCTGCACGGG TGA CCCGC-CACG           AAATTGAGGATGCTA  77 209
SH02_RS03605 NONE
        lplA  727434 ..  727455 - -10.1  -4.25401   CAAATCGAAGAGAAA           GTTGCCCGC ATGG GCGGGTAAC            TACCTTACAGCCCCC  93 25
SH02_RS03565 NONE
SH02_RS03560  718625 ..  718679 - -13.8  -2.57931   CGTAGGCCGGATAAG GCGTTCA-CGCCGCATCCGGCAGTTG GCGCA CAA-TGCCTGATGCGACGCTTAACGC GTCTTATCATGCCTA  95 380
        rsmC  710983 ..  710994 -  -7.2  -3.30124   TTGTAGGTCGGATAA                GGCG TTCA CGCC                 GCATCCGACACGGTA  64 54
SH02_RS03510 NONE
SH02_RS03505 NONE
SH02_RS03500  710103 ..  710117 -  -5.8  -3.53224   TATCTGGCTTGCAAA               TGATAA AAA TTATCA               TATGATATTGGTTAT  59 341
SH02_RS03490  708962 ..  708980 -  -5.9  -3.98282   GGTACATTAACCAAA             GCCGGAC GTTAA GCCCGAC             GGAGAGAGAAATATT  66 274
SH02_RS03475 NONE
SH02_RS03470  705926 ..  705961 - -13.4  -3.26947   TAACTTTTATAGTAA    CACACGGAGGAGAG GAGGCTGT CTCTCATCCGTGTG     CTTAAGCGAGGCAAT 100 42
SH02_RS03465 NONE
SH02_RS03460  704576 ..  704588 -  -3.3  -2.78384   TTGTGTCGCAGTATA                CCGCC AGA AACGG                GGATTAATACTCTTT  43 29
SH02_RS03455  704033 ..  704046 -  -5.2  -4.28254   GGGTAACAGCTAAAA               CGCG GCGTTT CGCG                GTTCAGGAAATGAAG  68 28
SH02_RS03450  701460 ..  701494 - -15.8  -3.33261   TTGTAAGCCGTAGAA     GGCGTGTAGGTCGCAC CCT ATGCGACCTACACATC     AGTCAGGAATTACCC 100 35
SH02_RS03440  699218 ..  699232 -  -5.6  -3.14468   TGTGAGCATAGGTAA               GCGGGA ATT TCCCGG               TATTTATCTTTTGAT  55 84
SH02_RS03435  697679 ..  697706 - -12.2   -4.2679   TAATCGCCATGAAAA        TGCCCGATAAGCA AAA TG-TTATCGGGCA        TAAGGAGATTAATCT 100 34
SH02_RS03425 NONE
SH02_RS03420  693456 ..  693473 - -14.1  -4.51812   TCTGATAAGAACAAA             GCCCCGC CGAA GCGGGGC              TAAACACGGTTAGTG 100 35
SH02_RS03415 NONE
SH02_RS03410  692163 ..  692208 -  -4.8  -3.06515   CCCCAGCTTCAAAAG CGCTCTGAAGTTCCTATACT TTCTAG AGAATAGGAACTTCGGAATA GGAACTAAGGAGGAT  50 80
SH02_RS03395  688961 ..  688971 -  -8.2  -3.00585   CATGAGAGGAAATCA                 GGCG CTT CGCC                 GCTATTTCGAATTTA  65 38
SH02_RS03385 NONE
SH02_RS03380 NONE
SH02_RS03375 NONE
SH02_RS03370 NONE
SH02_RS03365  682446 ..  682460 -  -3.6  -3.75153   TCCCTTTAAGGCAAA               TCAATA AGA TATCGA               GAAGTATACGTAGCG  56 55
SH02_RS03360 NONE
SH02_RS03355  680313 ..  680326 -  -2.4  -3.75629   GAGTGGTAAGGGAAA               CTTC CCTCAT GAAG                TGACCACTTGTAGCT  51 18
SH02_RS03345 NONE
SH02_RS03340 NONE
SH02_RS03335  677173 ..  677192 -  -2.9  -2.57132   CGGGCGGCTGACAAC            CGTTTAA GCCGTT TCAAACG             TTCCTTTCACGCAGG  41 9
SH02_RS03330  675816 ..  675834 -  -3.8  -4.10161   CAGGAGTGCGCAAAA             TGATGCGA CAA TCACTTCA             GGCTGTTTTACCTGA  60 391
SH02_RS03310 NONE
SH02_RS03305  673853 ..  673864 -  -2.2   -2.7186   AAATGCCTTGAATCA                GCCT ATTT AGAC                 CGTTTCTTCGCCATT  40 61
SH02_RS03300  672986 ..  673010 -  -8.6   -3.8512   GACTTATTATAATAA          GCGCAAGG GTAAACGTT CCTTGCGC          TTTCTTAAATTAAGA  75 128
SH02_RS03290  671699 ..  671726 -  -5.4  -4.11216   TCTGCACCTGCAAAA        CGGCGGCAGCTG GCGT CACCTGGCGCTG         GGCGTGGCTGGCTGG  65 305
SH02_RS03270  667419 ..  667432 -  -8.1  -3.50393   TTGTAGGCCAGATAA               GACGC GTCA GCGTC                GCATCTGGCATAAAC  68 169
SH02_RS03210  656918 ..  656930 -  -2.7  -4.56597   GGTGGTCTTCAAAAA                CTAAA GAT CTTAG                TTTAACTATTTGTTT  61 243
SH02_RS03200 NONE
SH02_RS03195  654479 ..  654498 - -12.1  -2.69246   GACAAATTGATAGCA            GGGCCCC TTTACC GGGGCCC             TGAAGCGTTAGTTTT  83 33
SH02_RS03190  653250 ..  653278 -  -3.8  -4.32482   AGCCATAATCGAAAA       GGCGCGGATGTCT ATTA AGGCATCCG-GCT        AATCTGTAAGCAATA  63 208
SH02_RS03175  650896 ..  650906 -    -4  -3.89346   TCCTGACGGGATAAA                 TTCA TAC TGAA                 GAACCTATTTAATCA  57 510
SH02_RS03170 NONE
SH02_RS03165 NONE
SH02_RS03160  649270 ..  649290 -  -6.8   -3.5511   TTCCAGCCAGAAATA            CCGGGAAC CTGTT GTTACCGG            GCGATGAGTGCGAAC  63 19
SH02_RS03155 NONE
SH02_RS03150 NONE
SH02_RS03145 NONE
SH02_RS03140 NONE
SH02_RS03135 NONE
SH02_RS03130 NONE
SH02_RS03125  642707 ..  642720 -  -2.4   -3.6878   ACATAGTGGAAAATA               TGCT TTGTTC AGCA                TGCTGAACCGTAATG  49 258
SH02_RS03120 NONE
SH02_RS03115  640941 ..  640954 -  -2.4  -3.09749   TATTGCGAACAGACA               TGAG TTTCTC CTCA                GACTGGTAAAATGCC  43 23
SH02_RS03110  638885 ..  638896 -  -5.8  -3.21276   CGTCCTCTCATAACA                GGGT AGCG ACCC                 ATCATTATCCGACTG  55 103
SH02_RS03105 NONE
SH02_RS03100 NONE
SH02_RS03095  636149 ..  636172 - -13.2  -2.67129   CTAATCAATAAAATC          CTGCCCCATA TCTA CATGGGGCAG           TTGTTCATTCTTTTA  91 38
SH02_RS03080  635147 ..  635168 -  -4.5  -3.44051   TGGTTATCATTACAA           TTGGAAATA AAAT TGTTTCCAA            TAGACATTTTTAACA  55 150
SH02_RS03075  634557 ..  634569 -  -4.1   -4.1673   GAATCGGTTAACAAA                GGATT CAT AACCC                ATACTCCAGACGGAA  61 17
SH02_RS03070 NONE
SH02_RS03065  631175 ..  631190 - -11.8  -4.19258   ACATTCCAGCTAAAA              GCCCGG CAAG CCGGGC               GTTAACACATCAGAA 100 35
        fecB NONE
        fecC NONE
        fecD NONE
SH02_RS03045  627456 ..  627474 -  -7.4  -4.10657   TCAGAGTCCGGAAAA             GTTCAGCC CCA GTCTGAAC             AGGCTTGCTGGCGCC  73 88
SH02_RS03030 NONE
SH02_RS03025  624005 ..  624023 -  -8.9  -3.05844   TTGGCCACCTGAACA             GAGGTGA TATGC TCACCTC             AGAACAACACAGGTG  62 315
SH02_RS03010  623002 ..  623030 -  -3.1  -3.90586   ATATGACCTCAGAAA        TGGATGGCGCTAT AGC ATATGGTCATCCA        GGAAAAAAAACACCA  55 468
SH02_RS02995  618745 ..  618762 -  -5.5  -2.96598   CAATTAAGGGACATA             GCCAGAT ACGC AACTGGC              TGATGCAAGCAGTCT  52 213
SH02_RS22910  616411 ..  616430 -  -7.2   -3.4072   TACTTTTCAGTACAA            GC-GACTGT ATT ACAGTCTGC            CATATATGATTACCT  66 119
SH02_RS02955  614791 ..  614810 -   -15  -2.89607   TTAAAACAGTAATCA            TCCCGGGC AAAT GCCCGGGA             ATTATTCTAGGATTA 100 288
SH02_RS02940  612001 ..  612014 -  -3.8  -3.57883   AGAATATGTGCGAAA               GAGG GCAGCG CCTC                AGATCAGCGCTGCGA  53 48
SH02_RS02930 NONE
SH02_RS02925  609402 ..  609419 - -12.7   -4.3898   ATTAGTGCCAGAAAA             GCAGCGC TTTC GCGCTGC              ACGTAGGGGGGCTGT 100 40
SH02_RS02920  607990 ..  608009 -  -4.2  -2.57931   GTGATTGCGCATAAC            TTCTCCCA ACGT CGGGGGAA             TCTTCAATCTTCCCC  45 69
SH02_RS02915  606915 ..  606942 -  -4.2  -2.80816   GGTTCACTCATGAGA        TATCCTCCAG TTTCCTGC CTGGAGTATA         GGCAACGTCCGGCAA  46 71
SH02_RS02910  605261 ..  605284 -   -14  -3.46482   AACCGAATGAACGAA          TAAAGGGAGC GAAA GCTCCCTTTA           TTATTGTTAGCAAAG 100 149
SH02_RS02895  601243 ..  601254 -  -7.2  -3.30124   GTGTAGGTCGGATAA                GGCG TTCA CGCC                 GCATCCGGCAATAAC  64 58
SH02_RS02890 NONE
SH02_RS02885  597785 ..  597804 -   -15  -5.47431   GTAAGAGATAAAAAA            GGCCGGAG CATG CTCCGGCC             TTCGTTTTCATCACT 100 50
SH02_RS02875  595486 ..  595504 -  -7.4  -2.74322   TTGAAGCGTTTAAAC             TCGGTTAC GAA GTGACCGA             TCCAGAAGAGCTGGA  57 402
SH02_RS02865  594106 ..  594138 -  -6.3  -2.50387   CTGCATAAAATAATG      TGATGCCGGGA TGGTTTGTATT TCCCGGCATCT      TTATAGCGATAGCAA  53 41
SH02_RS02845  590142 ..  590167 -  -8.3  -4.93877   CGTGAGTAAACAAAA         CCCAGACATCA TGGA TAATGGCTGGG          CTTAATTGAGCGTAG 100 45
SH02_RS02840 NONE
SH02_RS02830 NONE
SH02_RS02825 NONE
SH02_RS02820  587789 ..  587814 - -10.5  -4.61231   TTACAGCGGTAAAAA         GTCTGGCTC ATTATAGG GAGCCAGAC          TTTTATTACCAACCG 100 44
SH02_RS02815  587342 ..  587361 - -10.7  -3.14468   TGTCATCAGACTTAA            TCCGGGC ATGATA GCCCGGA             TTTCCATCAAGATTA  79 38
        treR  583093 ..  583106 -  -8.1  -4.92239   GGAAAAATTTAAAAA               CGGGA ACGT TCCCG                AAACGCAGCGAAGAT  95 65
SH02_RS02800 NONE
SH02_RS02795  579863 ..  579888 -  -9.8  -4.61868   TACTGACAGACAAAA         CCCCGG-AATG ACCGG CATTACCGGGG         CTTAGGGAAGATTTA 100 38
SH02_RS02790  577315 ..  577346 - -12.2  -2.65279   CAATTGCCAAATGTA      GGCCGGATAAGGCG TTTA CGCCGCATCCGGCA       TTTGCTTAGCTCAGA  83 48
SH02_RS02785  576439 ..  576452 -  -5.2  -4.58685   AAAGTGGTCGAAAAA               GCCG ATAACG CGGC                GCAAGTCAAAGACGC  75 320
SH02_RS02770  574077 ..  574112 -  -8.3  -2.79796   CGGCATTTGAGCATA    GTGCCTGATGCGACGC TTGAT GCGTCTTATCAGGC-C    TACAGGTGCACCGTA  64 74
SH02_RS02760  571429 ..  571450 - -15.9   -5.1356   GCGCAGCAATAAAAA           CGCCTCTCC GTGT GGAGAGGCG            CAGGAGATTACGCGT 100 33
SH02_RS02735  565611 ..  565623 -  -7.7  -3.15579   GCAAGCGGCCATGAA                CAGCA AGG TGCTG                GTCGACCTGCGCTTG  61 371
SH02_RS02700  558214 ..  558227 -  -5.3  -4.13014   GCCAGAGGGTTAAAA               TTCAG ACAG CTGAA                AAATGCAAAACTGCC  65 183
SH02_RS02695  556680 ..  556704 - -14.3  -3.73647   GCTATGCAGTAATAA          GACGGCTCCTG ATT CAGGAGCCGTT          GATGTTTCTGGGGGT 100 40
SH02_RS02685  555493 ..  555523 -    -7  -3.16743   AACTCAGAGACTTAA       TTCCCCTATC CCATAGATAAC GATAGGGGAA       AATTATTTTTGCAGA  59 57
        cpdB  551397 ..  551410 -  -6.7  -3.30124   TTGTAGGGCGGATAA               GATGC GCCA GCATC                GCATCCGCCAATAAA  61 84
SH02_RS02660  549953 ..  549996 -  -2.4  -2.73334   AGGAAGCAGACATGA TTGCTCCCGGCATCCCGTC ATTATCA GAGAGGATGC-GGGAGGAT GCCACTTTAATTAAC  40 40
SH02_RS02655  548859 ..  548877 -  -4.6  -3.83318   TTCTTAATAAGATAA             GATGTATT TTA AATGCATC             TTTAAGGCAAAAGCT  59 86
SH02_RS02650  547695 ..  547705 -  -6.8  -3.14132   GGTCTGGCGCAGGAA                 GGTG TGG CACC                 GAAAGCGTTCGCTAA  57 488
SH02_RS02635  544528 ..  544541 -  -3.7  -2.71731   TGTATTCGTTAATCA               GCAGG TTAG CCAGC                CACAAAAAGCCATTG  44 410
SH02_RS02625  543430 ..  543448 -   -16  -4.72333   AACGAGACGTAAAAA             CGCCGACC ATT GGTCGGCG             TTTTGCTTTCTATTT 100 52
SH02_RS02595  541305 ..  541322 - -12.7  -5.75342   GTTTTTCAAAAAAAA             GCCCCCT GCGA AGGGGGC              AAAGCAAACTATGGC 100 66
SH02_RS02560  535358 ..  535399 - -10.9  -3.47762   AATAGCCAGGAAATA CTACGCCGGATAGCGCGAA CTTC TCCACGCTACCCGGTATAA  ACGACAGATTACAGG  83 34
SH02_RS02555  534301 ..  534333 -  -2.1  -3.45087   ATGAATTCAATAACA     TTGTCGC--GCCACT GGCAG AGTGGGAAGCGACAA     ACCACCTGGAACAAC  47 237
SH02_RS02545  533240 ..  533251 -  -2.2  -2.82327   TGTGCACAGGTAAAC                GCAT AGGG ACGC                 AAAGCAATGTAAAGC  41 62
SH02_RS02540  532818 ..  532829 -  -7.2  -3.30124   TTGTAGGCCGGACAA                GGCG CTCG CGCC                 GCATCCGGCATTGTT  64 60
SH02_RS02430  509294 ..  509307 -  -6.7  -4.28049   TCCAAAATTTGAAAA               GTGCT GCAA AGCAC                AGACCACCCAAGCGG  74 493
SH02_RS02405 NONE
         psd NONE
SH02_RS02395  502779 ..  502805 -    -3  -5.40072   TTGTGGCGAAAAAAA        CGCGGCTGG TTTATGTACG CCA-CCGCG         CTGGCTATTTTCGGC  85 114
SH02_RS02370 NONE
SH02_RS02365 NONE
SH02_RS02360 NONE
SH02_RS02355  495814 ..  495834 - -19.7  -4.52589   GGTTTCCATACAAAA            CGGCCCGCC ATA GGCGGGCCG            GATTTACATTGGCGA 100 45
SH02_RS02350  494630 ..  494647 - -11.3  -4.46581   GAAAAGCGGAGAAAA             GGTCCGA AAAT TCGGACC              CGATGGAATTTTACT 100 36
SH02_RS02345  493554 ..  493577 -   -11  -3.90559   AGCAATAAGCAATAA          CGGTACGACA GCTG TGTCGTGCCG           TTTGTTTTTTCTGCG  88 484
SH02_RS02320  491294 ..  491311 -  -5.7  -3.38314   TGCAACGGGCAAAGA             TTAAACT TCCC AGTTTAA              TGACAGGTTGCTGTA  57 190
SH02_RS02315  490106 ..  490150 -  -8.6  -3.31322   TTGAATGCTTGAGAA TTTGT-AGGCCGGATAAGGCG TTTA CGCCGCATCCGGCATGACCAA CGATCACGTTATCAG  69 87
SH02_RS02295  485672 ..  485694 -  -5.6  -3.62046   CCAGGGCTTTAAGAA           TTTCGTGCTG ATG CAGCAAAAAA           TGGCGGCGGGTGAAA  58 334
        aspA  483692 ..  483711 - -13.6  -5.55769   GCTCACAAGAAAAAA            GGCACGTC ATCT GACGTGCC             TTTTTTATTTGTACT 100 52
SH02_RS02280  482290 ..  482309 - -16.4  -4.55295   TCGGCGAGAAAGAAA            GCGGGGCG TGAA CGCCCCGC             GATTGATCATTACAG 100 35
SH02_RS02275 NONE
        dipZ NONE
SH02_RS02265  479593 ..  479604 -  -3.6  -2.53876   TGTCAGGTCAATGCA                CCAC CCTG GCGG                 CAGCGGGCGAAGCGC  44 1
SH02_RS02260  479366 ..  479385 - -13.6  -4.98531   TCCTGAAACGAAAAA            CGGACCTC CGTG GAGGTCCG             TTTATATGAATTTGG 100 38
SH02_RS02255  477146 ..  477172 -  -5.1  -5.10461   TTTATGTAATAAAAA         TTATGCGGCAA ATAAA TTGCCGCAACA         TATTATACCAACAGG  81 96
        cadB  475487 ..  475526 -  -2.7  -5.08824   TCTCCAGGTAAAAAA  GGCCCCTCCCAACACAT GGGACA AAATGAAAGGAGGAGCC   TCGGAAAATACTTTT  73 43
SH02_RS02245  473282 ..  473303 - -14.5   -5.1861   CTTATGAGCAAAAAA           GGGAAGTGG CAAG CCACTTCCC            TTGTACGAGCTAATT 100 39
SH02_RS02240  471708 ..  471719 -  -4.4  -4.25016   ATCACTAATAAATAA                CCAT CAAA ATGG                 TTTAAATGACTTATT  63 107
        lysS  470003 ..  470034 - -20.4  -2.71364   GGATTTGCGGAACGA      TGAACGAAGCAGTC GCCT GACTGCTTCGTTCA       TTAAAGTGAAATTTA 100 38
SH02_RS02210 NONE
SH02_RS02205  465950 ..  465960 -  -3.2  -3.90048   TTGTGGGTAAAAATA                 CACA TAA TGCG                 GGTGACATAATAGTT  53 227
SH02_RS02195  464212 ..  464243 -  -8.7  -4.13767   TTTGTTATTCGAAAA      TGGCGTGCCGC GTAGTCACGG GCGGCACGCAA       AGTGCATTTATAAGA  83 33
SH02_RS02190  462474 ..  462499 -  -3.9  -3.70689   TACAATCGCAAAAGA         GGTGGCCAGGGG GAT CACCTGG-CAGC         ATGCTGCCAGGCGCT  53 53
SH02_RS02185  461660 ..  461688 -  -6.1  -4.45151   AATAGCTAACGAAAA        TGGCCTGAT GCGATATGTTT ATCAGGCCA        CGTCTTAATGTAATG  74 113
SH02_RS02165  457450 ..  457461 -    -3  -4.58685   AAAGCGCGTGAAAAA                CAAA CATT TTTG                 AAATATTTAGTTTTA  65 131
SH02_RS02160  454965 ..  454983 -  -8.8  -5.85178   AACAGGCAAAAAAAA             GCGCGG GGTGGGG CCGCGC             AAAAAGTATGACATT 100 143
SH02_RS02155  453886 ..  453896 -  -3.2  -4.07968   GAAGACATAATTAAA                 CTCC TGC GAAG                 GCGAGCTTCGTGACA  58 144
SH02_RS02150  452485 ..  452518 -  -9.7  -4.54727   GCTCGCAAAGCAAAA     TTAAGCCAACCTTAA GTTC TTAAGGTTGGCTTTT      ATGTTTGCTGGATTA 100 48
SH02_RS02145  450788 ..  450799 -    -3  -2.93073   CGTCTTCAACAATCA                GAAT TTTC ATTC                 ACTCACTCTCCTGCA  44 20
SH02_RS02140 NONE
SH02_RS02135  448863 ..  448893 - -12.6  -2.66593   ATAAGCTGAAACGGA       TGGCCTGATGTGAC GCT GTCTTATCAGGCCA       ATTGAACTCTTAAGG  88 160
SH02_RS02110  443164 ..  443218 -   -14  -3.21924   GTAGGCCTGATAAGA CGCGCAAGCGTCGCATCAGGCATCTG GCA CCGTTGCCGGATGCGGCGCGAGCGCC TTATCCGGCTTACCG 100 53
SH02_RS02105  442118 ..  442141 -  -4.5  -2.80994   GGGAATTCGATGACA          GTGCGGGAGG GCGGG CCTCCCGG-C          GGGTTATTGCGTTGG  49 29
SH02_RS02100 NONE
SH02_RS02095  440106 ..  440117 -  -5.8  -3.30124   CTGTAGGCCGGATAA                GGTG CTTG CACC                 GCATCCGGCATCAAC  57 91
SH02_RS02090 NONE
SH02_RS02085 NONE
SH02_RS02080 NONE
        phnH NONE
SH02_RS02070 NONE
SH02_RS02065 NONE
        phnK  434826 ..  434837 -  -7.2  -3.30124   TTGTAGGCCGGATAA                GGCG TTTA CGCC                 GCATCCGGCACCGGC  64 41
SH02_RS02055  434072 ..  434086 -    -7  -2.52529   GATAATCATGAAGAG               GCTCCC ATT GGGTGC               AGGCGGTCGGCGACG  55 1
SH02_RS02050 NONE
SH02_RS02045 NONE
SH02_RS02040 NONE
        phnP  431098 ..  431124 -  -2.2  -4.45083   GGGAGAGGGAGAAAA         CGAGCGCAATAT TCA ATATCGAGCACA         ATCGGTCCCCTCGCC  60 92
SH02_RS02020  428921 ..  428936 -  -6.8  -3.13475   TAAGGGGACAGGTAA              CTCCGC GATG GCGGAA               TTACCTTTTTCTTAT  59 37
SH02_RS02015  427814 ..  427828 -  -8.6  -2.91264   CCCGCCATCGATATA               TATGGC GTG GCCATA               AATAACCTCTCTGCA  65 151
SH02_RS02010 NONE
SH02_RS02005 NONE
SH02_RS02000 NONE
SH02_RS01995 NONE
SH02_RS01990  421420 ..  421451 - -10.9  -4.65933   TATTTTTAAAATAAA      TACTTTTGGGGGC TTCAGC GCCCCCAAAAGCG       AGTGACATTAATTTG 100 33
SH02_RS01985 NONE
SH02_RS01980 NONE
SH02_RS01975 NONE
SH02_RS01970  416379 ..  416404 - -11.9  -4.10552   CGTGACGAAACGAAA         TACCGCGTGAC AGCC ATCACGCGGCA          GACATTTTATTTTTT 100 32
SH02_RS01965  415785 ..  415808 -    -6  -2.53581   CAGACCTGCAACCGA          TGGGC-CGTGT CAG ACACGAGCGCA          GCAGTCAACGTTATT  52 11
SH02_RS01960  414032 ..  414051 - -13.6  -5.66684   GAATGGATAAAAAAA            CAGCCTCC GAAA GGAGGCTG             TAGAAAGGACGGTAT 100 40
SH02_RS01955  413105 ..  413134 - -12.9  -3.30124   TTGTAGGTCGGATAA       GGCGTTTATGCCG CATC CGACATCAACGCC        TGATGCGACGCTTAA 100 174
SH02_RS01910  402301 ..  402332 -   -13  -2.60392   CATCCGGCAATCAAT      GCCTGATGCGACGC TGTC GCGTCTTATCAGGC       CTACAAACCGTTACC  91 64
SH02_RS01905 NONE
        actP  400178 ..  400201 - -16.8  -2.79321   GGGAGAGGAAGAGTA          TTCCCCGGTC AGAC GACCGGGGAA           GGGGAGAGATTAATG 100 35
SH02_RS01895  398607 ..  398665 - -15.5  -2.76456   AAAGCGACGTAACCA GGCCCGAGGTAATCTGAAAAAGGTGCAA TCTT TTGCACCTTTAACAGGTTAGCTCGGG-C TAACATTCATGATTC 100 101
SH02_RS01875  393983 ..  394012 - -12.9  -3.19389   CAATGGATGGAGCAA       TTACCCGCGCG GGAGTTAA CGCGCGGGCAA        TAAAATTACAGGCGG  95 31
SH02_RS01865  391689 ..  391711 - -13.5  -5.28176   GCCAGCCATAAAAAA           GAAGCCTCC GTTAT GGAGGCTTC           TACGTATCAGGTCAA 100 32
SH02_RS01855  387981 ..  387999 - -12.4  -4.55128   ACTCTGAAAGGAAAA             GGCCGCTC AGA AAGCGGCC             TTAACGATTACAGCA 100 33
SH02_RS01835  385275 ..  385298 - -14.6  -3.79668   ATGTAATGCAGGAAA          GCAGGCTGGA GCTA CCCAGCCTGC           AGTGAAATTAAACTG 100 214
SH02_RS01815  380177 ..  380197 - -12.6  -5.00267   AACTATAAAAAGAAA            GGGCTTCC CAGGT GGAAGCCC            TATTTCTTTTATGGA 100 34
SH02_RS01790  376152 ..  376171 -  -4.3  -4.77567   ACGTTCAGAAGAAAA            GTGAACG TACTCT CATTCAC             AACCTAACGATGAGG  71 300
SH02_RS01765  370859 ..  370876 - -11.3   -5.1101   TGATGATGTAAAAAA             GCCGGAT GATC ATCCGGC              TTTCTTCTGGGTTGC 100 150
SH02_RS01725 NONE
        malE  362090 ..  362123 -  -9.5  -2.88118   TTATCCGACAACAAC     TGCCTGATGCGACGC TGAC GCGTCTTATCAGGCC      TACATACGTTTCGGT  70 89
        malF NONE
        malG  359496 ..  359513 - -12.7  -5.99154   GACGAAAGAAAAAAA             GGCGCTC CGTG GAGCGCC              GAATAACAGTCACAA 100 96
        xylE  357697 ..  357729 - -11.4  -4.73388   AAGCGGGAGTAAAAA     GT-CAGCACGCCG AAATGGCG CGGCGTGCTGGAC      AGGAAGATTACAGCG 100 33
SH02_RS01690  356700 ..  356727 -  -8.5   -3.6215   CTAAGTCATGGGAAA        GGTGCCAGT TTTCGCACTC ACTGGCACC         TTCATTCTTAATGGC  73 33
SH02_RS01665 NONE
SH02_RS01660  351615 ..  351663 -   -13  -3.30243   ATGTAGGCCGGATAA GGCGTTCACGCCGCATCCGGCA ACCGA TGCCTGATGCGACGCGGTCGCG TCTTATCAGGCCTAC 100 73
SH02_RS01650  348029 ..  348058 -  -7.2  -3.85542   TGACAAGAAAATCAA       TACGGCCCGAAA TATAGC TTCCAGGCCATA        CAGTATTTACTCAAA  70 32
SH02_RS01645  347342 ..  347362 -  -4.5  -4.61527   AAAACGGCGGAAAAA            GGCGGTCGC CCG GCGTCCAAC            GGTAAGCGTTTTACC  72 203
SH02_RS01635  345607 ..  345627 - -11.2  -3.45742   GCACTATGAACAAGA            TGCCGGAT CATGC ATCCGGCA            ATTCACTTAAAAACG  83 32
SH02_RS01620  338729 ..  338739 -  -2.6  -2.80079   AACAGTGAAAAAATT                 TAAT ATG ATTA                 CAACTAAAGAAATAT  42 271
SH02_RS01615  335978 ..  335993 -  -6.8  -5.07053   AAGCAGCGGAAAAAA              TCACCG ATCT CGGCGA               ACAAATTGTGATTCG  90 514
SH02_RS01590  329354 ..  329374 - -10.4  -5.05228   ATCAAATTAGAAAAA           CCCCGGTCC ATAA GG-CCGGGG            TTTTTTGCATATCAA 100 512
SH02_RS01560 NONE
SH02_RS01555 NONE
        purH NONE
SH02_RS01545  320750 ..  320777 - -10.4  -4.36914   CGGCGCTGGAGAAAA        CGGGCGGCAACA AAAC CGAAGCCGCCCG         TCAGTTAGGGATCAC  90 71
        zraP  316979 ..  317020 -  -4.5  -2.62616   GCAGTGGCGATACCA CGA-CGCGAGAGTATCGC TGGCAGG GCGATAACCTCACGCTCA TCAATATCAATGTTT  45 449
SH02_RS01495  312463 ..  312478 -  -7.5  -3.15008   TCCGACAAGAAATTA              GCCCC GCAAAT GGGGC               ATTGAATGTAAATTA  62 60
SH02_RS01490 NONE
SH02_RS01485 NONE
SH02_RS01480 NONE
SH02_RS01475 NONE
SH02_RS01470 NONE
        thiH  306507 ..  306532 - -14.1  -4.17762   CAGCCCTCAAAATAA         CAAAACCCACC TTAA GGTGGGTTTCG          CCAGAGAATTATCTC 100 409
SH02_RS01390 NONE
SH02_RS01385  290233 ..  290250 -  -8.4  -4.80417   CAGAAAAATAAGAAA             GGGGAG TATTCG CTCCCC              TGCAAATTATTTGCG 100 32
SH02_RS01340  278006 ..  278020 -  -4.2  -4.79752   GTGAACAAGAGAAAA               CCGCAA TTA TTCCGG               GAAATGTGAAGGACG  71 444
SH02_RS01325  275274 ..  275287 -  -4.5   -3.1552   GGCTATCTATGAAGA               TCACC CGTG GGCGA                ACCGCGAATGCGTAC  49 397
SH02_RS01300 NONE
SH02_RS01295  269504 ..  269519 -    -4  -3.56594   TCAAATGCTGCGAAA              TCGCTT CAGC AAACGA               ATAAATAGCAGGAAT  52 91
SH02_RS01290  266677 ..  266698 - -13.7  -4.41206   AAGTATTTCAGAAAA           CCCTCGCGC AAAA GCACGAGGG            TTTGCAGAAGAGGAA 100 43
SH02_RS01285  264716 ..  264760 - -17.3  -3.53811   CGGATGTGGCGTAAA CGCCTTATCCAGCCTACCG CCGCGAT CTGTAGGCCGGATAAGACG CGTCAAGCGTCGCAT 100 66
SH02_RS01280  263567 ..  263579 -  -9.1  -2.82834   TAGCGGATGAGGATA                TCCGC CGG GCGGA                TGTTGCTCTGTTGAT  63 181
SH02_RS01250 NONE
SH02_RS01245 NONE
        gldA  254171 ..  254189 - -11.7  -3.53343   AATTTTGCGTTCAAA             CTCCCGG ACAAG CCGGGAG             TTTGGAGTAGGTTAT  89 37
SH02_RS01235  254046 ..  254062 -  -7.9  -2.62983   GGGAGTTTCAGATTA              CTGGCAC AGA GTGCCGG              ATGCGGAGTGAACGC  60 1
SH02_RS01230  252834 ..  252848 -  -4.2  -4.25104   TCTCTTCGATGAAAA               GTGCCA TGC TGGCAA               TCCTCTCCGGCGTCA  62 486
SH02_RS01210  248167 ..  248184 -  -2.6     -2.54   AGCAGGTTACAACAT             CGAACC GGATCA GGTACG              TGTGGAATCGCTGGT  38 516
SH02_RS01195 NONE
SH02_RS01190  243516 ..  243529 -  -9.5  -5.02074   GGATTTCCGAAAAAA               GCGCC GCAC GGCGC                TTTTTTTGTGCCTGA 100 53
SH02_RS01180 NONE
SH02_RS01175  239507 ..  239520 -  -5.2  -2.82987   GCAATAGCGACCATA               GCGG GAGAAA CCGC                AGGCAGATTTCGTTG  50 207
SH02_RS01170  238594 ..  238613 - -13.6  -4.05991   AATACAGAGTACAAA            CCCCGTAC AAAA GTACGGGG             CATAATGCAATTATA 100 63
SH02_RS01165 NONE
        hslU  236639 ..  236656 -  -9.1  -5.06816   ACGCGCCAATAAAAA             TGGGGCC TTTC AGCCCCA              TCAAACAATGATGAA 100 56
SH02_RS01155  235669 ..  235683 -  -5.8  -3.08032   CTGTTGGCAAAATCA               TCAATT GTT AATTGA               TATTTGTCAGTTATG  55 36
SH02_RS01150  235093 ..  235108 - -10.4  -5.31456   GTAACGCAGAAAAAA              GGCACC TTGC GGTGCC               TTTCTTATCATTCAA 100 33
SH02_RS01140 NONE
        glpK NONE
SH02_RS01130  230798 ..  230819 - -13.1   -5.7946   CTCCGAACAAAAAAA           TTCCAGTCC CGAA GGACTGGAA            GGCTCAATCGATCAA 100 46
SH02_RS01125  229734 ..  229756 - -10.8  -3.41024   CCCTGCAACAGAAGA           TATTCTTCAA TTG TTGAAGAATA           AGTCGGATAACAAGC  76 266
SH02_RS01105  227815 ..  227835 -  -5.4  -3.41962   GCGAATAAAGGAAGA           TGGCCGCCC CGCA GGGCAGC-A            GGTCTGTGAAACAGT  57 76
SH02_RS01100  226979 ..  227001 - -13.5   -3.6187   AGTTAAGGAAAGTAA           GTGCCGGAT ATGAA ATCCGGCAC           CTGTCAGACTTAAGC 100 35
SH02_RS01070 NONE
        cpxA  219791 ..  219805 -   -10  -3.30124   GTGTAGGCCTGATAA               GACGCT ATC AGCGTC               GCATCAGGCATCCTG  76 93
SH02_RS01050  217438 ..  217452 -  -5.6   -4.6902   GCAGAATTTGAAAAA               GCGGCA GCT TCCCGC               TTTGGTTCCGGCTGG  75 315
SH02_RS01040  215240 ..  215266 - -10.1  -3.05596   GATTCCGGGATTTAA         CGCCAGCGCAG GGCAA CCACACTGGCG         CTTAGGTAGCATGGG  69 521
        rhaB NONE
SH02_RS01015  210601 ..  210647 - -14.3  -2.57931   CGTAGGCCGGATAAG GCGCTCGCGCCGCATCCGGCA ATCAA TGCCTGATGCGACGCTGTCGC GTCTTATCAGGCCTA  95 372
SH02_RS01010 NONE
SH02_RS01005  209363 ..  209386 -   -11  -2.86093   CGAAATTTAAAATAT          TGTGCCGGAG GCAT CTCTGGCACA           TTGGGCAATTACGGC  77 34
SH02_RS01000 NONE
SH02_RS00995 NONE
SH02_RS00990 NONE
SH02_RS00985  204347 ..  204377 -   -14  -2.97475   TTTTTGATGATAAAT       GCAGTGTCGGATGC GGC GCATCCGACACAGT       TCACCCCTTGTGAAG 100 26
SH02_RS00970 NONE
SH02_RS00965 NONE
SH02_RS00960 NONE
SH02_RS00955 NONE
SH02_RS00950  196459 ..  196471 -  -4.7  -3.62864   TAAATTGAGGCCAAA                CCGGC ACT GGCGG                CATAGCTTGAGGTGG  57 124
SH02_RS00945  196251 ..  196262 -    -3  -5.09426   GGTAATGGGAAAAAA                TGAT GTCA ATCA                 GATTGCTGACAACGT  75 19
SH02_RS00900 NONE
SH02_RS00895 NONE
SH02_RS00890  186668 ..  186696 - -12.6  -2.61274   GGCACCTTAATTAAC       GACATACAGCCTC CCGT GAGGCTG-ATGTC        AAACCCAAAAACTGC  88 115
SH02_RS00885  185634 ..  185644 -  -2.6  -3.01857   CATAAAACTGATATA                 TAAA AAC TTTA                 CAGAAGCTGAGCTGT  43 127
SH02_RS00880 NONE
SH02_RS00875  182053 ..  182066 -  -9.5  -3.30619   AATCACTCCTTATAA               CGCCC CGCA GGGCG                TCGTTTATTATTATT  74 39
SH02_RS00870  180590 ..  180604 -    -7  -2.64472   CATTTTTTAAACGTA               GGGAGG CCG CCACCC               ACCAGGATGGAAATA  56 55
        ompL  179788 ..  179812 - -11.5  -3.37612   CTGAAGCTTAATTAA          TGGCCGGAT GTGCTTA ATCCGGCCA          ACGAAAACCGTATCA  86 87
SH02_RS00840 NONE
        glnA  172705 ..  172722 -    -7  -5.28176   TTGACGGAGAAAAAA             GCCCAT GCAGAG ATGGGC              TACAGATAGCTGACA  89 199
        glnL NONE
        glnG  170132 ..  170155 -  -3.1   -3.5947   AATCTTTACACACAA          GCTGTGAAT CACTCC ATCCCCAGC           TCTTTTAACTTACGC  51 10
SH02_RS00820  169815 ..  169868 - -16.1  -2.57931   TGTAGGCCGGATAAG GCGTTTA-CGCCGCATCAGGCATC TGAGCAT GATGCCTGATGCGGCGCTGGTCGC GTCTTATCAGGCCTA 100 75
SH02_RS00805  166359 ..  166385 -  -7.2  -2.55392   AATCTATTGAATTTA         CGGGCCGGATAC GCC ACATCCGGCACA         AGCATTAAGGCAAGA  58 44
SH02_RS00795  162892 ..  162902 -  -8.2   -3.9122   CAGTGCGCTAAAGAA                 GCGC AAG GCGC                 AGATTTTAGCAGAAA  77 116
SH02_RS00790  161905 ..  161938 -   -14  -3.73042   TTGTTCATTAAAATA     CTCACTCGCCTCTG CTCATT CAGAGGCGAGTAAA      ACTTACTTATTCTGA 100 28
        mobA NONE
SH02_RS00760  157134 ..  157167 -  -7.3  -5.60993   TGGCGCAGAAAAAAA     TGCCGGATGCGACGC TGGC GCGTCTTATCCAGCC      TACTCTTGCTTATCC 100 35
        fadB NONE
        fadA  143512 ..  143530 -  -9.5  -5.76633   TGAGATATAAAAAAA             CCCGCCC CTGAC AGGCGGG             AAGAACGGCAACTAA 100 375
        rfaH  140545 ..  140558 -  -4.5  -2.52623   TGGCGTGGAGAAGAT               GCC-GC ATG GCTGGC               TGCCACCACGGATGC  44 71
SH02_RS00640  131594 ..  131614 - -16.9  -3.92659   GGGGTAAAATCCAAA            CCGGGTGGT AAT ACCACCCGG            TCTTTTCTCATTACA 100 36
SH02_RS00630  127936 ..  127954 -  -2.3  -4.41241   GAAATGCGCAGAAAA             TGCCGCA AACCA CGCTGCA             ATGGGGCATTCTGGT  60 205
        rhtB  124672 ..  124701 - -14.3  -3.25823   GCGTCTTCAGAGTAA       GTCGGATAAGGCG TTTA CGCCGCATCCGAC        ATTATTTTTCACGCA 100 34
SH02_RS00590  120478 ..  120490 -  -4.8  -3.06261   TTTTAATTGGTAACA                GCAG TTTAC CTGC                TTTTATGTCTTCAAC  50 36
SH02_RS00585  119508 ..  119533 -  -8.3  -3.07043   GTCAGCATGGCAATA         TGCCCACTCTC ATGC AAGAGTCGGCA          TATTTTTTCAGAATA  67 51
SH02_RS00580 NONE
SH02_RS00575  118657 ..  118685 -  -7.4  -3.25177   TTGTAAAAAACGAGA        GCGGTGGCTTAG TCTGG CTAAGCCACCTG        TTATTCAAAGGCTCC  64 30
SH02_RS00560  116182 ..  116197 -    -6  -3.02263   AGAGTGTGTGGAAGA              GGTGCG CCTG CGCGCC               ACGGTAAGCCGCCCG  53 391
        cyaY  109975 ..  110004 - -11.5  -3.14211   ATTTTTCGTGATGAA       CGTGCCGGA-AAGC GAG GCTTATCCGGCATG       CAATCTTAGCGGAAA  84 31
        hemC NONE
        hemD NONE
SH02_RS00505 NONE
SH02_RS00500  102923 ..  102948 -    -6  -2.53164   TTATGTATCAGGAAG         GCCCCGGAGG TGCTTG CCTCCGGGTG          AGAAGGAACTACTGT  52 34
SH02_RS00495  100572 ..  100585 -  -6.7  -3.30124   CTGTAGGCTGGATAA               GATGC GTCA GCATC                GCATCCGGCAAAGGC  61 63
SH02_RS00380   80555 ..   80568 -  -5.3  -2.73364   CTTTCACCTGAATCA               CTTAC TACA GTAAG                CTCATCGGGATTCAT  49 93
SH02_RS00375   78790 ..   78805 - -10.4  -3.90922   ACGCTGTGTAAAGAA              CGCCGT CAGT ACGGCG               AACTGGTGCGCCCGG  81 236
SH02_RS00365   76188 ..   76204 - -13.7  -4.18802   ACATATATGGCAAAA              GCCCGGA AAA TCCGGGC              TTCGCAGGTCCCTCA 100 104
SH02_RS00360   75769 ..   75802 -  -9.7  -4.45083   GGGAGAGGGAGAAAA     CACTCAAGGCCTTCTC CTG GAGAAGGCCTTGC-TA     TTAGTTGCGGTACAG 100 26
SH02_RS00350   73154 ..   73181 -  -9.2  -4.65895   CGGGTTAGGGAAAAA        TGCCTGAT-AGCG CTT CGCTTATCAGGCC        TACCCGCGCGACAAC 100 42
SH02_RS00315   64702 ..   64714 -  -6.2  -5.15167   GACGATTAATAAAAA                GGGC GAAAT GCCC                TTTTTTTATGTCAGT  87 31
SH02_RS00305   62937 ..   62958 -  -8.7  -3.91196   CTGATACAGATTAAA           TCAGAACGC AGAA GCGGTCTGA            TGAAACAGAATTTGC  80 466
SH02_RS00270 NONE
SH02_RS00265   55427 ..   55440 -  -4.5  -2.60079   CCATCGGATAACCCA               GCCGA CCCT TCAGC                AACAACGATTACAAC  45 41
SH02_RS00225 NONE
SH02_RS00220   44286 ..   44304 - -10.2  -2.71712   GCTGCGCGGTGAAAT             GCCGCAGA CCA TCGGCGGC             GGTATCGGCCAGTCT  67 144
SH02_RS00210   42731 ..   42753 -  -8.5  -2.92102   ATATCTGCCATAAAC          CGCCAC-CTT TATT AAGAGTGGCG           TATTGTACGCTGTGA  65 88
SH02_RS00205   42198 ..   42212 -  -7.2  -2.66977   CACAACTCAAAAACT               GAACAA CAG TTGTTC               TTTGGATAACTACCG  58 96
        gidA NONE
        gidB   39203 ..   39240 -  -5.2  -5.52384   TGCTTACCAAAAAAA  GCCACGTT-A-TCTTGTTG ATG CAA-AAGAGTGAACGTGGC  GTTAAATGTAACCAG  87 113
SH02_RS00190 NONE
SH02_RS00185 NONE
SH02_RS00180   37215 ..   37227 -  -3.3  -3.88331   TTTAAATAAAAGCAA                CGCTT ACT ACGCG                ACAGCGAACATCACG  53 19
SH02_RS00175 NONE
SH02_RS00170 NONE
SH02_RS00165 NONE
SH02_RS00160   33678 ..   33693 -  -2.4  -3.56366   AATAACCTGTTTAAA              CCGCGG CGGC CCCCGA               GACGATCTCGGTGAG  47 5
SH02_RS00155 NONE
        atpC   31780 ..   31801 - -12.3  -5.76949   CACGCGCAAAAAAAA           GCCAGCCTG TTTC CAGACTGGC            TTTTGTGCTTTTCAA 100 48
        glmU NONE
SH02_RS00140   28082 ..   28101 - -11.4  -5.19251   TAACAGGAAGAAAAA            TGCCCCGC TTAC GCAGGGCA             TCCATTTATTACTCA 100 34
SH02_RS00135   26764 ..   26775 -  -7.2  -2.82635   AGTTTTATTAGTACA                GCGG CTTA CCGC                 TACTGTCTTTAATAT  59 6
        pstC NONE
        pstA   24680 ..   24733 -  -4.3  -2.71364   GCACTTCGCTAATCA GGCTTACCGTAGGCCGGATCAGGCG TTCA CGCCGCATCCGGCAAAGTGTTAACC GTGTACAGAGTCAAA  45 112
SH02_RS00120 NONE
SH02_RS00115   23084 ..   23114 - -14.3  -3.63054   TAAAGTTATATATAA       CAAATCCCAATAA TTAAG TTATTGGGATTTG       TCTGGTGAATTATTT 100 35
SH02_RS00110   21924 ..   21941 -  -4.1  -2.91328   AACCTGAAAAAAACG             GCCTGAC GTGA ATCAAGC              AATTTTTTTCAGGTT  47 86
SH02_RS00105 NONE
SH02_RS00100   18528 ..   18553 - -12.7  -2.64572   GAAAGAATTAACGCA         TCGCATCCAGA CTGT TCTGAATGCGA          CGATAATTAAGGTGC  88 32
SH02_RS00095 NONE
SH02_RS00090 NONE
SH02_RS00085   14901 ..   14928 - -10.6  -3.39438   TAAATAATGAGAACA        GGCCGGA-GCGTA ATT CACACATCCGGCC        TTATTTCTTAAGCTT  78 39
SH02_RS00065   11498 ..   11522 - -12.2  -5.65927   GATCTAAATAAAAAA         CCCGCCA-GCA ATCA TGCATGGCGGG          TTTTTAACGCGCTAT 100 46
