locus-tag class description SH08_RS00005 PF00468 Ribosomal protein L34 SH08_RS00010 PF00825 Ribonuclease P SH08_RS00015 PF01809 Putative membrane protein insertion efficiency factor SH08_RS00020 PF02096 60Kd inner membrane protein SH08_RS00020 PF14849 YidC periplasmic domain SH08_RS00025 PF01926 50S ribosome-binding GTPase SH08_RS00025 PF12631 MnmE helical domain SH08_RS00025 PF10396 GTP-binding protein TrmE N-terminus SH08_RS00030 PF08053 Tryptophanase operon leader peptide SH08_RS00035 PF01212 Beta-eliminating lyase SH08_RS00040 PF03222 Tryptophan/tyrosine permease family SH08_RS00045 PF07690 Major Facilitator Superfamily SH08_RS00050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS00050 PF03466 LysR substrate binding domain SH08_RS00060 PF03358 NADPH-dependent FMN reductase SH08_RS00065 PF00860 Permease family SH08_RS00070 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS00080 PF03691 Uncharacterised protein family (UPF0167) SH08_RS00085 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH08_RS00090 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH08_RS00090 PF00756 Putative esterase SH08_RS00095 PF11471 Maltoporin periplasmic N-terminal extension SH08_RS00095 PF02264 LamB porin SH08_RS00100 PF00232 Glycosyl hydrolase family 1 SH08_RS00105 PF02378 Phosphotransferase system, EIIC SH08_RS00105 PF00367 phosphotransferase system, EIIB SH08_RS00105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH08_RS00110 PF00874 PRD domain SH08_RS00110 PF03123 CAT RNA binding domain SH08_RS00115 PF01895 PhoU domain SH08_RS00120 PF00005 ABC transporter SH08_RS00125 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS00130 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS00135 PF12849 PBP superfamily domain SH08_RS00140 PF04754 Putative transposase, YhgA-like SH08_RS00145 PF01380 SIS domain SH08_RS00150 PF12804 MobA-like NTP transferase domain SH08_RS00150 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS00150 PF14602 Hexapeptide repeat of succinyl-transferase SH08_RS00155 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain SH08_RS00155 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain SH08_RS00160 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH08_RS00160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH08_RS00165 PF00231 ATP synthase SH08_RS00170 PF02874 ATP synthase alpha/beta family, beta-barrel domain SH08_RS00170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH08_RS00170 PF00306 ATP synthase alpha/beta chain, C terminal domain SH08_RS00175 PF00213 ATP synthase delta (OSCP) subunit SH08_RS00180 PF00430 ATP synthase B/B' CF(0) SH08_RS00185 PF00137 ATP synthase subunit C SH08_RS00190 PF00119 ATP synthase A chain SH08_RS00195 PF03899 ATP synthase I chain SH08_RS00200 PF02527 rRNA small subunit methyltransferase G SH08_RS00205 PF01134 Glucose inhibited division protein A SH08_RS00205 PF13932 GidA associated domain SH08_RS00210 PF00258 Flavodoxin SH08_RS00215 PF01037 Lrp/AsnC ligand binding domain SH08_RS00220 PF03590 Aspartate-ammonia ligase SH08_RS00225 PF05762 VWA domain containing CoxE-like protein SH08_RS00230 PF07728 AAA domain (dynein-related subfamily) SH08_RS00230 PF17868 AAA lid domain SH08_RS00230 PF12592 Protein of unknown function (DUF3763) SH08_RS00235 PF02705 K+ potassium transporter SH08_RS00240 PF05025 RbsD / FucU transport protein family SH08_RS00245 PF00005 ABC transporter SH08_RS00250 PF02653 Branched-chain amino acid transport system / permease component SH08_RS00255 PF13407 Periplasmic binding protein domain SH08_RS00260 PF00294 pfkB family carbohydrate kinase SH08_RS00265 PF00356 Bacterial regulatory proteins, lacI family SH08_RS00270 PF07690 Major Facilitator Superfamily SH08_RS00275 PF07729 FCD domain SH08_RS00275 PF00392 Bacterial regulatory proteins, gntR family SH08_RS00310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS00310 PF03466 LysR substrate binding domain SH08_RS00315 PF04219 Protein of unknown function, DUF SH08_RS00320 PF01078 Magnesium chelatase, subunit ChlI SH08_RS00320 PF13335 Magnesium chelatase, subunit ChlI C-terminal SH08_RS00325 PF08046 IlvGEDA operon leader peptide SH08_RS00340 PF01063 Amino-transferase class IV SH08_RS00345 PF00920 Dehydratase family SH08_RS00350 PF00585 C-terminal regulatory domain of Threonine dehydratase SH08_RS00350 PF00291 Pyridoxal-phosphate dependent enzyme SH08_RS00355 PF03466 LysR substrate binding domain SH08_RS00355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS00360 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain SH08_RS00360 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain SH08_RS00375 PF00580 UvrD/REP helicase N-terminal domain SH08_RS00375 PF13361 UvrD-like helicase C-terminal domain SH08_RS00380 PF02541 Ppx/GppA phosphatase family SH08_RS00385 PF00270 DEAD/DEAH box helicase SH08_RS00385 PF00271 Helicase conserved C-terminal domain SH08_RS00390 PF00085 Thioredoxin SH08_RS00400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH08_RS00400 PF07497 Rho termination factor, RNA-binding domain SH08_RS00400 PF07498 Rho termination factor, N-terminal domain SH08_RS00410 PF00953 Glycosyl transferase family 4 SH08_RS00415 PF02706 Chain length determinant protein SH08_RS00420 PF02350 UDP-N-acetylglucosamine 2-epimerase SH08_RS00425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH08_RS00425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH08_RS00425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH08_RS00430 PF16363 GDP-mannose 4,6 dehydratase SH08_RS00435 PF00483 Nucleotidyl transferase SH08_RS00445 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH08_RS00450 PF01943 Polysaccharide biosynthesis protein SH08_RS00455 PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 SH08_RS00460 PF06899 WzyE protein, O-antigen assembly polymerase SH08_RS00465 PF03808 Glycosyl transferase WecB/TagA/CpsF family SH08_RS00470 PF00324 Amino acid permease SH08_RS00495 PF04055 Radical SAM superfamily SH08_RS00495 PF13186 Iron-sulfur cluster-binding domain SH08_RS00500 PF00884 Sulfatase SH08_RS00505 PF07219 HemY protein N-terminus SH08_RS00505 PF07719 Tetratricopeptide repeat SH08_RS00510 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase SH08_RS00515 PF02602 Uroporphyrinogen-III synthase HemD SH08_RS00520 PF03900 Porphobilinogen deaminase, C-terminal domain SH08_RS00520 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain SH08_RS00525 PF12633 Adenylate cyclase NT domain SH08_RS00525 PF01295 Adenylate cyclase, class-I SH08_RS00530 PF01491 Frataxin-like domain SH08_RS00535 PF13627 Prokaryotic lipoprotein-attachment site SH08_RS00540 PF01678 Diaminopimelate epimerase SH08_RS00545 PF04340 Protein of unknown function, DUF484 SH08_RS00550 PF02899 Phage integrase, N-terminal SAM-like domain SH08_RS00550 PF00589 Phage integrase family SH08_RS00555 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS00560 PF00580 UvrD/REP helicase N-terminal domain SH08_RS00560 PF13361 UvrD-like helicase C-terminal domain SH08_RS00565 PF09992 Phosphodiester glycosidase SH08_RS00575 PF01544 CorA-like Mg2+ transporter protein SH08_RS00580 PF10947 Protein of unknown function (DUF2628) SH08_RS00590 PF00892 EamA-like transporter family SH08_RS00595 PF03061 Thioesterase superfamily SH08_RS00600 PF02253 Phospholipase A1 SH08_RS00605 PF00570 HRDC domain SH08_RS00605 PF09382 RQC domain SH08_RS00605 PF16124 RecQ zinc-binding SH08_RS00605 PF00271 Helicase conserved C-terminal domain SH08_RS00605 PF00270 DEAD/DEAH box helicase SH08_RS00610 PF01810 LysE type translocator SH08_RS00615 PF01810 LysE type translocator SH08_RS00620 PF12146 Serine aminopeptidase, S33 SH08_RS00630 PF00892 EamA-like transporter family SH08_RS00635 PF03466 LysR substrate binding domain SH08_RS00635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS00640 PF08267 Cobalamin-independent synthase, N-terminal domain SH08_RS00640 PF01717 Cobalamin-independent synthase, Catalytic domain SH08_RS00645 PF01738 Dienelactone hydrolase family SH08_RS00650 PF01048 Phosphorylase superfamily SH08_RS00655 PF02646 RmuC family SH08_RS00660 PF01209 ubiE/COQ5 methyltransferase family SH08_RS00665 PF02036 SCP-2 sterol transfer family SH08_RS00670 PF03109 ABC1 family SH08_RS00675 PF02416 mttA/Hcf106 family SH08_RS00685 PF00902 Sec-independent protein translocase protein (TatC) SH08_RS00690 PF01026 TatD related DNase SH08_RS00695 PF02357 Transcription termination factor nusG SH08_RS00700 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase SH08_RS00705 PF00175 Oxidoreductase NAD-binding domain SH08_RS00705 PF00970 Oxidoreductase FAD-binding domain SH08_RS00710 PF00108 Thiolase, N-terminal domain SH08_RS00710 PF02803 Thiolase, C-terminal domain SH08_RS00715 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH08_RS00715 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH08_RS00715 PF00378 Enoyl-CoA hydratase/isomerase SH08_RS00720 PF00557 Metallopeptidase family M24 SH08_RS00725 PF01205 Uncharacterized protein family UPF0029 SH08_RS00725 PF09186 Domain of unknown function (DUF1949) SH08_RS00730 PF02386 Cation transport protein SH08_RS00735 PF12724 Flavodoxin domain SH08_RS00765 PF03205 Molybdopterin guanine dinucleotide synthesis protein B SH08_RS00770 PF12804 MobA-like NTP transferase domain SH08_RS00775 PF06288 Protein of unknown function (DUF1040) SH08_RS00780 PF01636 Phosphotransferase enzyme family SH08_RS00785 PF01323 DSBA-like thioredoxin domain SH08_RS00790 PF06097 Bacterial protein of unknown function (DUF945) SH08_RS00795 PF01553 Acyltransferase SH08_RS00805 PF01367 5'-3' exonuclease, C-terminal SAM fold SH08_RS00805 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH08_RS00805 PF00476 DNA polymerase family A SH08_RS00805 PF01612 3'-5' exonuclease SH08_RS00810 PF01926 50S ribosome-binding GTPase SH08_RS00815 PF04220 Der GTPase activator (YihI) SH08_RS00820 PF04055 Radical SAM superfamily SH08_RS00820 PF06969 HemN C-terminal domain SH08_RS00830 PF02954 Bacterial regulatory protein, Fis family SH08_RS00830 PF00072 Response regulator receiver domain SH08_RS00830 PF00158 Sigma-54 interaction domain SH08_RS00835 PF00989 PAS fold SH08_RS00835 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS00835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS00840 PF00120 Glutamine synthetase, catalytic domain SH08_RS00840 PF03951 Glutamine synthetase, beta-Grasp domain SH08_RS00850 PF00009 Elongation factor Tu GTP binding domain SH08_RS00850 PF00679 Elongation factor G C-terminus SH08_RS00850 PF03144 Elongation factor Tu domain 2 SH08_RS00855 PF07702 UTRA domain SH08_RS00855 PF00392 Bacterial regulatory proteins, gntR family SH08_RS00860 PF01261 Xylose isomerase-like TIM barrel SH08_RS00865 PF07690 Major Facilitator Superfamily SH08_RS00870 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH08_RS00885 PF01055 Glycosyl hydrolases family 31 SH08_RS00890 PF01263 Aldose 1-epimerase SH08_RS00900 PF01791 DeoC/LacD family aldolase SH08_RS00905 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH08_RS00905 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH08_RS00910 PF00294 pfkB family carbohydrate kinase SH08_RS00915 PF00455 DeoR C terminal sensor domain SH08_RS00915 PF08220 DeoR-like helix-turn-helix domain SH08_RS00920 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS00925 PF03631 Virulence factor BrkB SH08_RS00930 PF02580 D-Tyr-tRNA(Tyr) deacylase SH08_RS00935 PF09500 Putative thioesterase (yiiD_Cterm) SH08_RS00935 PF00583 Acetyltransferase (GNAT) family SH08_RS00940 PF01402 Ribbon-helix-helix protein, copG family SH08_RS00955 PF04216 Protein involved in formate dehydrogenase formation SH08_RS00960 PF01292 Prokaryotic cytochrome b561 SH08_RS00965 PF13247 4Fe-4S dicluster domain SH08_RS00965 PF09163 Formate dehydrogenase N, transmembrane SH08_RS00970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS00970 PF01568 Molydopterin dinucleotide binding domain SH08_RS00970 PF00384 Molybdopterin oxidoreductase SH08_RS00975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS00975 PF00384 Molybdopterin oxidoreductase SH08_RS00975 PF01568 Molydopterin dinucleotide binding domain SH08_RS00980 PF02634 FdhD/NarQ family SH08_RS00985 PF12889 Protein of unknown function (DUF3829) SH08_RS00990 PF08279 HTH domain SH08_RS00990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS00995 PF05343 M42 glutamyl aminopeptidase SH08_RS01000 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS01000 PF02378 Phosphotransferase system, EIIC SH08_RS01005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS01010 PF05336 L-rhamnose mutarotase SH08_RS01015 PF00596 Class II Aldolase and Adducin N-terminal domain SH08_RS01020 PF06134 L-rhamnose isomerase (RhaA) SH08_RS01025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH08_RS01025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH08_RS01035 PF12833 Helix-turn-helix domain SH08_RS01035 PF02311 AraC-like ligand binding domain SH08_RS01040 PF02311 AraC-like ligand binding domain SH08_RS01040 PF12833 Helix-turn-helix domain SH08_RS01045 PF06379 L-rhamnose-proton symport protein (RhaT) SH08_RS01050 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH08_RS01050 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH08_RS01060 PF03812 2-keto-3-deoxygluconate permease SH08_RS01065 PF03475 3-alpha domain SH08_RS01065 PF03473 MOSC domain SH08_RS01070 PF16527 Two-component sensor protein CpxA, periplasmic domain SH08_RS01070 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS01070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS01070 PF00672 HAMP domain SH08_RS01075 PF00072 Response regulator receiver domain SH08_RS01075 PF00486 Transcriptional regulatory protein, C terminal SH08_RS01080 PF07813 LTXXQ motif family protein SH08_RS01085 PF16916 Dimerisation domain of Zinc Transporter SH08_RS01085 PF01545 Cation efflux family SH08_RS01090 PF00365 Phosphofructokinase SH08_RS01100 PF02611 CDP-diacylglycerol pyrophosphatase SH08_RS01105 PF00121 Triosephosphate isomerase SH08_RS01110 PF07305 Protein of unknown function (DUF1454) SH08_RS01115 PF05656 Protein of unknown function (DUF805) SH08_RS01120 PF04175 Protein of unknown function (DUF406) SH08_RS01125 PF00582 Universal stress protein family SH08_RS01130 PF00175 Oxidoreductase NAD-binding domain SH08_RS01130 PF00970 Oxidoreductase FAD-binding domain SH08_RS01135 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH08_RS01140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH08_RS01140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH08_RS01145 PF00230 Major intrinsic protein SH08_RS01150 PF06005 Cell division protein ZapB SH08_RS01155 PF03737 Aldolase/RraA SH08_RS01160 PF01040 UbiA prenyltransferase family SH08_RS01165 PF00004 ATPase family associated with various cellular activities (AAA) SH08_RS01165 PF10431 C-terminal, D2-small domain, of ClpB protein SH08_RS01165 PF07724 AAA domain (Cdc48 subfamily) SH08_RS01170 PF00227 Proteasome subunit SH08_RS01175 PF05036 Sporulation related domain SH08_RS01180 PF00356 Bacterial regulatory proteins, lacI family SH08_RS01185 PF00271 Helicase conserved C-terminal domain SH08_RS01185 PF17764 3′ DNA-binding domain (3′BD) SH08_RS01185 PF18074 Primosomal protein N C-terminal domain SH08_RS01185 PF00270 DEAD/DEAH box helicase SH08_RS01185 PF18319 PriA DNA helicase Cys-rich region (CRR) domain SH08_RS01190 PF01197 Ribosomal protein L31 SH08_RS01195 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH08_RS01200 PF01340 Met Apo-repressor, MetJ SH08_RS01210 PF03447 Homoserine dehydrogenase, NAD binding domain SH08_RS01210 PF00696 Amino acid kinase family SH08_RS01210 PF00742 Homoserine dehydrogenase SH08_RS01220 PF02219 Methylenetetrahydrofolate reductase SH08_RS01225 PF00141 Peroxidase SH08_RS01230 PF00892 EamA-like transporter family SH08_RS01235 PF06940 Domain of unknown function (DUF1287) SH08_RS01245 PF00465 Iron-containing alcohol dehydrogenase SH08_RS01250 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH08_RS01255 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS01255 PF00381 PTS HPr component phosphorylation site SH08_RS01255 PF02896 PEP-utilising enzyme, TIM barrel domain SH08_RS01255 PF00391 PEP-utilising enzyme, mobile domain SH08_RS01255 PF05524 PEP-utilising enzyme, N-terminal SH08_RS01265 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS01270 PF02901 Pyruvate formate lyase-like SH08_RS01270 PF01228 Glycine radical SH08_RS01275 PF04055 Radical SAM superfamily SH08_RS01280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS01285 PF12833 Helix-turn-helix domain SH08_RS01290 PF00884 Sulfatase SH08_RS01295 PF00311 Phosphoenolpyruvate carboxylase SH08_RS01305 PF01546 Peptidase family M20/M25/M40 SH08_RS01305 PF07687 Peptidase dimerisation domain SH08_RS01310 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH08_RS01310 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH08_RS01315 PF00696 Amino acid kinase family SH08_RS01320 PF14698 Argininosuccinate lyase C-terminal SH08_RS01320 PF00206 Lyase SH08_RS01325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS01325 PF03466 LysR substrate binding domain SH08_RS01330 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS01330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH08_RS01335 PF00440 Bacterial regulatory proteins, tetR family SH08_RS01340 PF07226 Protein of unknown function (DUF1422) SH08_RS01345 PF05958 tRNA (Uracil-5-)-methyltransferase SH08_RS01350 PF00593 TonB dependent receptor SH08_RS01350 PF07715 TonB-dependent Receptor Plug Domain SH08_RS01355 PF01177 Asp/Glu/Hydantoin racemase SH08_RS01380 PF01565 FAD binding domain SH08_RS01380 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain SH08_RS01385 PF02237 Biotin protein ligase C terminal domain SH08_RS01385 PF03099 Biotin/lipoate A/B protein ligase family SH08_RS01385 PF08279 HTH domain SH08_RS01390 PF00485 Phosphoribulokinase / Uridine kinase family SH08_RS01420 PF00009 Elongation factor Tu GTP binding domain SH08_RS01420 PF03144 Elongation factor Tu domain 2 SH08_RS01420 PF03143 Elongation factor Tu C-terminal domain SH08_RS01425 PF00584 SecE/Sec61-gamma subunits of protein translocation complex SH08_RS01430 PF02357 Transcription termination factor nusG SH08_RS01430 PF00467 KOW motif SH08_RS01435 PF00298 Ribosomal protein L11, RNA binding domain SH08_RS01435 PF03946 Ribosomal protein L11, N-terminal domain SH08_RS01440 PF00687 Ribosomal protein L1p/L10e family SH08_RS01445 PF00466 Ribosomal protein L10 SH08_RS01450 PF16320 Ribosomal protein L7/L12 dimerisation domain SH08_RS01450 PF00542 Ribosomal protein L7/L12 C-terminal domain SH08_RS01455 PF00562 RNA polymerase Rpb2, domain 6 SH08_RS01455 PF04560 RNA polymerase Rpb2, domain 7 SH08_RS01455 PF10385 RNA polymerase beta subunit external 1 domain SH08_RS01455 PF04565 RNA polymerase Rpb2, domain 3 SH08_RS01455 PF04561 RNA polymerase Rpb2, domain 2 SH08_RS01455 PF04563 RNA polymerase beta subunit SH08_RS01460 PF04998 RNA polymerase Rpb1, domain 5 SH08_RS01460 PF04983 RNA polymerase Rpb1, domain 3 SH08_RS01460 PF00623 RNA polymerase Rpb1, domain 2 SH08_RS01460 PF04997 RNA polymerase Rpb1, domain 1 SH08_RS01460 PF05000 RNA polymerase Rpb1, domain 4 SH08_RS01470 PF04055 Radical SAM superfamily SH08_RS01470 PF06968 Biotin and Thiamin Synthesis associated domain SH08_RS01475 PF05690 Thiazole biosynthesis protein ThiG SH08_RS01480 PF02597 ThiS family SH08_RS01485 PF00899 ThiF family SH08_RS01490 PF02581 Thiamine monophosphate synthase SH08_RS01495 PF13667 ThiC-associated domain SH08_RS01495 PF01964 Radical SAM ThiC family SH08_RS01500 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ SH08_RS01505 PF00293 NUDIX domain SH08_RS01505 PF09297 NADH pyrophosphatase zinc ribbon domain SH08_RS01510 PF01208 Uroporphyrinogen decarboxylase (URO-D) SH08_RS01515 PF04493 Endonuclease V SH08_RS01520 PF04222 Protein of unknown function (DUF416) SH08_RS01525 PF00216 Bacterial DNA-binding protein SH08_RS01530 PF07356 Protein of unknown function (DUF1481) SH08_RS01535 PF13801 Heavy-metal resistance SH08_RS01540 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS01545 PF00158 Sigma-54 interaction domain SH08_RS01545 PF00072 Response regulator receiver domain SH08_RS01545 PF02954 Bacterial regulatory protein, Fis family SH08_RS01550 PF02843 Phosphoribosylglycinamide synthetase, C domain SH08_RS01550 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain SH08_RS01550 PF02844 Phosphoribosylglycinamide synthetase, N domain SH08_RS01555 PF01808 AICARFT/IMPCHase bienzyme SH08_RS01555 PF02142 MGS-like domain SH08_RS01595 PF13673 Acetyltransferase (GNAT) domain SH08_RS01600 PF04204 Homoserine O-succinyltransferase SH08_RS01605 PF01274 Malate synthase SH08_RS01610 PF00463 Isocitrate lyase family SH08_RS01615 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) SH08_RS01620 PF07906 ShET2 enterotoxin, N-terminal region SH08_RS01625 PF09339 IclR helix-turn-helix domain SH08_RS01625 PF01614 Bacterial transcriptional regulator SH08_RS01630 PF02607 B12 binding domain SH08_RS01630 PF02965 Vitamin B12 dependent methionine synthase, activation domain SH08_RS01630 PF02310 B12 binding domain SH08_RS01630 PF00809 Pterin binding enzyme SH08_RS01630 PF02574 Homocysteine S-methyltransferase SH08_RS01635 PF02690 Na+/Pi-cotransporter SH08_RS01640 PF03575 Peptidase family S51 SH08_RS01645 PF01479 S4 domain SH08_RS01645 PF00849 RNA pseudouridylate synthase SH08_RS01650 PF11656 YjbD family (DUF3811) SH08_RS01655 PF00696 Amino acid kinase family SH08_RS01655 PF01842 ACT domain SH08_RS01660 PF00342 Phosphoglucose isomerase SH08_RS01665 PF03400 IS1 transposase SH08_RS01670 PF03811 InsA N-terminal domain SH08_RS01670 PF12759 InsA C-terminal domain SH08_RS01675 PF11106 Exopolysaccharide production protein YjbE SH08_RS01680 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH08_RS01685 PF06251 Capsule biosynthesis GfcC SH08_RS01690 PF06082 Exopolysaccharide biosynthesis protein YbjH SH08_RS01695 PF17089 Uncharacterised protein family SH08_RS01705 PF06146 Phosphate-starvation-inducible E SH08_RS01710 PF00083 Sugar (and other) transporter SH08_RS01715 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS01720 PF14785 Maltose transport system permease protein MalF P2 domain SH08_RS01720 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS01725 PF01547 Bacterial extracellular solute-binding protein SH08_RS01735 PF17912 MalK OB fold domain SH08_RS01735 PF00005 ABC transporter SH08_RS01740 PF02264 LamB porin SH08_RS01745 PF07148 Maltose operon periplasmic protein precursor (MalM) SH08_RS01755 PF13599 Pentapeptide repeats (9 copies) SH08_RS01755 PF13981 SopA-like central domain SH08_RS01760 PF04345 Chorismate lyase SH08_RS01765 PF01040 UbiA prenyltransferase family SH08_RS01770 PF01553 Acyltransferase SH08_RS01775 PF01219 Prokaryotic diacylglycerol kinase SH08_RS01780 PF00717 Peptidase S24-like SH08_RS01780 PF01726 LexA DNA binding domain SH08_RS01785 PF01554 MatE SH08_RS01790 PF05532 CsbD-like SH08_RS01795 PF01475 Ferric uptake regulator family SH08_RS01805 PF10897 Protein of unknown function (DUF2713) SH08_RS01810 PF01207 Dihydrouridine synthase (Dus) SH08_RS01815 PF09583 Phage shock protein G (Phageshock_PspG) SH08_RS01820 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS01820 PF00107 Zinc-binding dehydrogenase SH08_RS01825 PF03796 DnaB-like helicase C terminal domain SH08_RS01825 PF00772 DnaB-like helicase N terminal domain SH08_RS01830 PF00842 Alanine racemase, C-terminal domain SH08_RS01830 PF01168 Alanine racemase, N-terminal domain SH08_RS01835 PF00155 Aminotransferase class I and II SH08_RS01845 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) SH08_RS01850 PF01894 Uncharacterised protein family UPF0047 SH08_RS01855 PF04237 YjbR SH08_RS01860 PF17760 UvrA interaction domain SH08_RS01860 PF17755 UvrA DNA-binding domain SH08_RS01860 PF00005 ABC transporter SH08_RS01865 PF00436 Single-strand binding protein family SH08_RS01870 PF15940 Family of unknown function SH08_RS01875 PF12792 CSS motif domain associated with EAL SH08_RS01875 PF00563 EAL domain SH08_RS01880 PF12833 Helix-turn-helix domain SH08_RS01885 PF00376 MerR family regulatory protein SH08_RS01885 PF09278 MerR, DNA binding SH08_RS01890 PF00860 Permease family SH08_RS01895 PF00999 Sodium/hydrogen exchanger family SH08_RS01900 PF00805 Pentapeptide repeats (8 copies) SH08_RS01905 PF00474 Sodium:solute symporter family SH08_RS01910 PF04341 Protein of unknown function, DUF485 SH08_RS01915 PF00501 AMP-binding enzyme SH08_RS01915 PF16177 Acetyl-coenzyme A synthetase N-terminus SH08_RS01915 PF13193 AMP-binding enzyme C-terminal domain SH08_RS01920 PF02335 Cytochrome c552 SH08_RS01925 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) SH08_RS01925 PF13435 Cytochrome c554 and c-prime SH08_RS01930 PF13247 4Fe-4S dicluster domain SH08_RS01930 PF00037 4Fe-4S binding domain SH08_RS01935 PF03916 Polysulphide reductase, NrfD SH08_RS01940 PF01578 Cytochrome C assembly protein SH08_RS01940 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH08_RS01945 PF03918 Cytochrome C biogenesis protein SH08_RS01955 PF00375 Sodium:dicarboxylate symporter family SH08_RS01960 PF08238 Sel1 repeat SH08_RS01965 PF00384 Molybdopterin oxidoreductase SH08_RS01965 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS01965 PF01568 Molydopterin dinucleotide binding domain SH08_RS01970 PF01568 Molydopterin dinucleotide binding domain SH08_RS01970 PF00384 Molybdopterin oxidoreductase SH08_RS01970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS01975 PF02321 Outer membrane efflux protein SH08_RS01980 PF04632 Fusaric acid resistance protein family SH08_RS01985 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS01985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS01990 PF17090 Uncharacterised protein family SH08_RS01995 PF14864 Alkyl sulfatase C-terminal SH08_RS01995 PF14863 Alkyl sulfatase dimerisation SH08_RS01995 PF00753 Metallo-beta-lactamase superfamily SH08_RS02000 PF00480 ROK family SH08_RS02005 PF00834 Ribulose-phosphate 3 epimerase family SH08_RS02010 PF02653 Branched-chain amino acid transport system / permease component SH08_RS02015 PF00005 ABC transporter SH08_RS02020 PF13407 Periplasmic binding protein domain SH08_RS02025 PF01418 Helix-turn-helix domain, rpiR family SH08_RS02025 PF01380 SIS domain SH08_RS02030 PF02502 Ribose/Galactose Isomerase SH08_RS02040 PF12706 Beta-lactamase superfamily domain SH08_RS02045 PF00583 Acetyltransferase (GNAT) family SH08_RS02055 PF07969 Amidohydrolase family SH08_RS02060 PF00005 ABC transporter SH08_RS02065 PF00005 ABC transporter SH08_RS02070 PF06007 Phosphonate metabolism protein PhnJ SH08_RS02075 PF05861 Bacterial phosphonate metabolism protein (PhnI) SH08_RS02080 PF05845 Bacterial phosphonate metabolism protein (PhnH) SH08_RS02085 PF06754 Phosphonate metabolism protein PhnG SH08_RS02090 PF07702 UTRA domain SH08_RS02090 PF00392 Bacterial regulatory proteins, gntR family SH08_RS02105 PF00005 ABC transporter SH08_RS02110 PF06983 3-demethylubiquinone-9 3-methyltransferase SH08_RS02115 PF03831 PhnA domain SH08_RS02115 PF08274 PhnA Zinc-Ribbon SH08_RS02120 PF00350 Dynamin family SH08_RS02125 PF13990 YjcZ-like protein SH08_RS02130 PF00083 Sugar (and other) transporter SH08_RS02130 PF08946 Osmosensory transporter coiled coil SH08_RS02140 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS02145 PF00072 Response regulator receiver domain SH08_RS02145 PF00486 Transcriptional regulatory protein, C terminal SH08_RS02150 PF00884 Sulfatase SH08_RS02150 PF08019 Phosphoethanolamine transferase EptA/EptB SH08_RS02155 PF13520 Amino acid permease SH08_RS02160 PF12833 Helix-turn-helix domain SH08_RS02165 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH08_RS02165 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH08_RS02165 PF01276 Orn/Lys/Arg decarboxylase, major domain SH08_RS02170 PF12833 Helix-turn-helix domain SH08_RS02180 PF02056 Family 4 glycosyl hydrolase SH08_RS02180 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH08_RS02190 PF09997 Predicted membrane protein (DUF2238) SH08_RS02195 PF05683 Fumarase C-terminus SH08_RS02195 PF05681 Fumarate hydratase (Fumerase) SH08_RS02200 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH08_RS02210 PF00072 Response regulator receiver domain SH08_RS02215 PF00989 PAS fold SH08_RS02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS02215 PF17203 Single cache domain 3 SH08_RS02215 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH08_RS02220 PF06902 Divergent 4Fe-4S mono-cluster SH08_RS02225 PF14542 GCN5-related N-acetyl-transferase SH08_RS02230 PF11080 Endoribonuclease GhoS SH08_RS02235 PF10753 Toxin GhoT_OrtT SH08_RS02240 PF01336 OB-fold nucleic acid binding domain SH08_RS02240 PF00152 tRNA synthetases class II (D, K and N) SH08_RS02245 PF00854 POT family SH08_RS02250 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH08_RS02250 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH08_RS02250 PF01276 Orn/Lys/Arg decarboxylase, major domain SH08_RS02255 PF13520 Amino acid permease SH08_RS02260 PF18500 CadC C-terminal domain 1 SH08_RS02260 PF00486 Transcriptional regulatory protein, C terminal SH08_RS02275 PF02683 Cytochrome C biogenesis protein transmembrane region SH08_RS02275 PF11412 Disulphide bond corrector protein DsbC SH08_RS02280 PF03091 CutA1 divalent ion tolerance protein SH08_RS02285 PF03605 Anaerobic c4-dicarboxylate membrane transporter SH08_RS02290 PF00206 Lyase SH08_RS02290 PF10415 Fumarase C C-terminus SH08_RS02295 PF04186 FxsA cytoplasmic membrane protein SH08_RS02300 PF13520 Amino acid permease SH08_RS02305 PF00166 Chaperonin 10 Kd subunit SH08_RS02310 PF00118 TCP-1/cpn60 chaperonin family SH08_RS02315 PF13698 Domain of unknown function (DUF4156) SH08_RS02320 PF15922 YjeJ-like SH08_RS02325 PF04055 Radical SAM superfamily SH08_RS02330 PF08207 Elongation factor P (EF-P) KOW-like domain SH08_RS02330 PF01132 Elongation factor P (EF-P) OB domain SH08_RS02330 PF09285 Elongation factor P, C-terminal SH08_RS02335 PF08085 Entericidin EcnA/B family SH08_RS02340 PF08085 Entericidin EcnA/B family SH08_RS02345 PF00893 Small Multidrug Resistance protein SH08_RS02350 PF08212 Lipocalin-like domain SH08_RS02355 PF00144 Beta-lactamase SH08_RS02360 PF02313 Fumarate reductase subunit D SH08_RS02365 PF02300 Fumarate reductase subunit C SH08_RS02370 PF13183 4Fe-4S dicluster domain SH08_RS02370 PF13085 2Fe-2S iron-sulfur cluster binding domain SH08_RS02375 PF00890 FAD binding domain SH08_RS02375 PF02910 Fumarate reductase flavoprotein C-term SH08_RS02380 PF00152 tRNA synthetases class II (D, K and N) SH08_RS02385 PF13520 Amino acid permease SH08_RS02395 PF10840 Protein of unknown function (DUF2645) SH08_RS02400 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH08_RS02400 PF00924 Mechanosensitive ion channel SH08_RS02400 PF12795 Mechanosensitive ion channel porin domain SH08_RS02405 PF02666 Phosphatidylserine decarboxylase SH08_RS02410 PF03193 RsgA GTPase SH08_RS02415 PF00929 Exonuclease SH08_RS02435 PF08331 Domain of unknown function (DUF1730) SH08_RS02440 PF01256 Carbohydrate kinase SH08_RS02440 PF03853 YjeF-related protein N-terminus SH08_RS02445 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE SH08_RS02450 PF01520 N-acetylmuramoyl-L-alanine amidase SH08_RS02455 PF08676 MutL C terminal dimerisation domain SH08_RS02455 PF01119 DNA mismatch repair protein, C-terminal domain SH08_RS02465 PF17209 Hfq protein SH08_RS02470 PF01926 50S ribosome-binding GTPase SH08_RS02470 PF13167 GTP-binding GTPase N-terminal SH08_RS02470 PF16360 GTP-binding GTPase Middle Region SH08_RS02475 PF01145 SPFH domain / Band 7 family SH08_RS02475 PF12221 Bacterial membrane protein N terminal SH08_RS02480 PF01145 SPFH domain / Band 7 family SH08_RS02485 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) SH08_RS02490 PF00709 Adenylosuccinate synthetase SH08_RS02495 PF02082 Transcriptional regulator SH08_RS02500 PF00773 RNB domain SH08_RS02500 PF08461 Ribonuclease R winged-helix domain SH08_RS02500 PF17876 Cold shock domain SH08_RS02500 PF00575 S1 RNA binding domain SH08_RS02500 PF08206 Ribonuclease B OB domain SH08_RS02505 PF00588 SpoU rRNA Methylase family SH08_RS02505 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH08_RS02510 PF09938 Uncharacterized protein conserved in bacteria (DUF2170) SH08_RS02515 PF04012 PspA/IM30 family SH08_RS02520 PF10679 Protein of unknown function (DUF2491) SH08_RS02525 PF03994 Domain of Unknown Function (DUF350) SH08_RS02530 PF06693 Protein of unknown function (DUF1190) SH08_RS02535 PF03738 Glutathionylspermidine synthase preATP-grasp SH08_RS02540 PF18158 Adaptive response protein AidB N-terminal domain SH08_RS02540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH08_RS02540 PF02770 Acyl-CoA dehydrogenase, middle domain SH08_RS02545 PF07338 Protein of unknown function (DUF1471) SH08_RS02550 PF07338 Protein of unknown function (DUF1471) SH08_RS02555 PF00326 Prolyl oligopeptidase family SH08_RS02560 PF00455 DeoR C terminal sensor domain SH08_RS02560 PF08220 DeoR-like helix-turn-helix domain SH08_RS02570 PF03611 PTS system sugar-specific permease component SH08_RS02575 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS02580 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS02585 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH08_RS02590 PF01261 Xylose isomerase-like TIM barrel SH08_RS02595 PF00596 Class II Aldolase and Adducin N-terminal domain SH08_RS02600 PF07338 Protein of unknown function (DUF1471) SH08_RS02610 PF01250 Ribosomal protein S6 SH08_RS02615 PF00436 Single-strand binding protein family SH08_RS02620 PF01084 Ribosomal protein S18 SH08_RS02625 PF03948 Ribosomal protein L9, C-terminal domain SH08_RS02625 PF01281 Ribosomal protein L9, N-terminal domain SH08_RS02630 PF10887 Protein of unknown function (DUF2686) SH08_RS02635 PF17938 Tetracyclin repressor-like, C-terminal domain SH08_RS02640 PF08525 Opacity-associated protein A N-terminal motif SH08_RS02640 PF04225 Opacity-associated protein A LysM-like domain SH08_RS02645 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH08_RS02645 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH08_RS02650 PF00324 Amino acid permease SH08_RS02655 PF04405 Domain of Unknown function (DUF542) SH08_RS02655 PF01814 Hemerythrin HHE cation binding domain SH08_RS02660 PF00892 EamA-like transporter family SH08_RS02665 PF05368 NmrA-like family SH08_RS02670 PF01638 HxlR-like helix-turn-helix SH08_RS02675 PF02872 5'-nucleotidase, C-terminal domain SH08_RS02675 PF00149 Calcineurin-like phosphoesterase SH08_RS02680 PF00459 Inositol monophosphatase family SH08_RS02690 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) SH08_RS02695 PF06526 Protein of unknown function (DUF1107) SH08_RS02700 PF01595 Cyclin M transmembrane N-terminal domain SH08_RS02700 PF00571 CBS domain SH08_RS02700 PF03471 Transporter associated domain SH08_RS02705 PF01625 Peptide methionine sulfoxide reductase SH08_RS02715 PF01103 Surface antigen SH08_RS02715 PF07244 Surface antigen variable number repeat SH08_RS02715 PF17243 POTRA domain TamA domain 1 SH08_RS02720 PF04357 TamB, inner membrane protein subunit of TAM complex SH08_RS02725 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like SH08_RS02730 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH08_RS02735 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH08_RS02740 PF00719 Inorganic pyrophosphatase SH08_RS02745 PF13407 Periplasmic binding protein domain SH08_RS02750 PF00005 ABC transporter SH08_RS02755 PF02653 Branched-chain amino acid transport system / permease component SH08_RS02760 PF02653 Branched-chain amino acid transport system / permease component SH08_RS02765 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain SH08_RS02770 PF01225 Mur ligase family, catalytic domain SH08_RS02770 PF02875 Mur ligase family, glutamate ligase domain SH08_RS02770 PF08245 Mur ligase middle domain SH08_RS02775 PF04751 Protein of unknown function (DUF615) SH08_RS02780 PF01523 Putative modulator of DNA gyrase SH08_RS02785 PF07361 Cytochrome b562 SH08_RS02795 PF13597 Anaerobic ribonucleoside-triphosphate reductase SH08_RS02795 PF03477 ATP cone domain SH08_RS02800 PF11941 Domain of unknown function (DUF3459) SH08_RS02800 PF00128 Alpha amylase, catalytic domain SH08_RS02805 PF00367 phosphotransferase system, EIIB SH08_RS02805 PF02378 Phosphotransferase system, EIIC SH08_RS02810 PF00356 Bacterial regulatory proteins, lacI family SH08_RS02815 PF00689 Cation transporting ATPase, C-terminus SH08_RS02815 PF00690 Cation transporter/ATPase, N-terminus SH08_RS02820 PF01042 Endoribonuclease L-PSP SH08_RS02825 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain SH08_RS02825 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain SH08_RS02830 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH08_RS02830 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH08_RS02835 PF08052 PyrBI operon leader peptide SH08_RS02845 PF01042 Endoribonuclease L-PSP SH08_RS02855 PF00440 Bacterial regulatory proteins, tetR family SH08_RS02860 PF04074 YhcH/YjgK/YiaL SH08_RS02870 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH08_RS02870 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH08_RS02875 PF06877 Regulator of ribonuclease activity B SH08_RS02880 PF00583 Acetyltransferase (GNAT) family SH08_RS02885 PF05987 Bacterial protein of unknown function (DUF898) SH08_RS02890 PF08264 Anticodon-binding domain of tRNA SH08_RS02890 PF00133 tRNA synthetases class I (I, L, M and V) SH08_RS02890 PF10458 Valyl tRNA synthetase tRNA binding arm SH08_RS02895 PF04364 DNA polymerase III chi subunit, HolC SH08_RS02900 PF02789 Cytosol aminopeptidase family, N-terminal domain SH08_RS02900 PF00883 Cytosol aminopeptidase family, catalytic domain SH08_RS02905 PF03739 Lipopolysaccharide export system permease LptF/LptG SH08_RS02910 PF03739 Lipopolysaccharide export system permease LptF/LptG SH08_RS02915 PF05872 Bacterial protein of unknown function (DUF853) SH08_RS02920 PF00356 Bacterial regulatory proteins, lacI family SH08_RS02925 PF02447 GntP family permease SH08_RS02930 PF00106 short chain dehydrogenase SH08_RS02935 PF00107 Zinc-binding dehydrogenase SH08_RS02935 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS02940 PF01202 Shikimate kinase SH08_RS02945 PF00107 Zinc-binding dehydrogenase SH08_RS02945 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS02955 PF00589 Phage integrase family SH08_RS02955 PF13356 Arm DNA-binding domain SH08_RS02965 PF01527 Transposase SH08_RS02970 PF13276 HTH-like domain SH08_RS02970 PF00665 Integrase core domain SH08_RS03000 PF13006 Insertion element 4 transposase N-terminal SH08_RS03000 PF01609 Transposase DDE domain SH08_RS03005 PF07690 Major Facilitator Superfamily SH08_RS03010 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH08_RS03010 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH08_RS03015 PF16747 Surface-adhesin protein E SH08_RS03020 PF11700 Vacuole effluxer Atg22 like SH08_RS03025 PF01527 Transposase SH08_RS03030 PF00665 Integrase core domain SH08_RS03030 PF13936 Helix-turn-helix domain SH08_RS03035 PF01527 Transposase SH08_RS03050 PF00005 ABC transporter SH08_RS03055 PF01032 FecCD transport family SH08_RS03060 PF01032 FecCD transport family SH08_RS03065 PF01497 Periplasmic binding protein SH08_RS03070 PF00593 TonB dependent receptor SH08_RS03070 PF07660 Secretin and TonB N terminus short domain SH08_RS03070 PF07715 TonB-dependent Receptor Plug Domain SH08_RS03075 PF16220 Domain of unknown function (DUF4880) SH08_RS03075 PF04773 FecR protein SH08_RS03080 PF08281 Sigma-70, region 4 SH08_RS03080 PF04542 Sigma-70 region 2 SH08_RS03095 PF03400 IS1 transposase SH08_RS03100 PF04198 Putative sugar-binding domain SH08_RS03110 PF02447 GntP family permease SH08_RS03115 PF00920 Dehydratase family SH08_RS03120 PF00701 Dihydrodipicolinate synthetase family SH08_RS03125 PF01614 Bacterial transcriptional regulator SH08_RS03130 PF08220 DeoR-like helix-turn-helix domain SH08_RS03130 PF00455 DeoR C terminal sensor domain SH08_RS03135 PF00834 Ribulose-phosphate 3 epimerase family SH08_RS03140 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS03145 PF03437 BtpA family SH08_RS03150 PF03611 PTS system sugar-specific permease component SH08_RS03155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS03160 PF05343 M42 glutamyl aminopeptidase SH08_RS03165 PF13847 Methyltransferase domain SH08_RS03170 PF00583 Acetyltransferase (GNAT) family SH08_RS03175 PF09857 Putative toxin of bacterial toxin-antitoxin pair SH08_RS03190 PF13087 AAA domain SH08_RS03190 PF13091 PLD-like domain SH08_RS03195 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase SH08_RS03205 PF06178 Oligogalacturonate-specific porin protein (KdgM) SH08_RS03220 PF00589 Phage integrase family SH08_RS03225 PF00589 Phage integrase family SH08_RS03235 PF00419 Fimbrial protein SH08_RS03240 PF00419 Fimbrial protein SH08_RS03245 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS03245 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS03250 PF13953 PapC C-terminal domain SH08_RS03250 PF13954 PapC N-terminal domain SH08_RS03250 PF00577 Outer membrane usher protein SH08_RS03255 PF00419 Fimbrial protein SH08_RS03265 PF00419 Fimbrial protein SH08_RS03265 PF09160 FimH, mannose binding SH08_RS03270 PF02447 GntP family permease SH08_RS03280 PF03786 D-mannonate dehydratase (UxuA) SH08_RS03285 PF01232 Mannitol dehydrogenase Rossmann domain SH08_RS03285 PF08125 Mannitol dehydrogenase C-terminal domain SH08_RS03295 PF07729 FCD domain SH08_RS03295 PF00392 Bacterial regulatory proteins, gntR family SH08_RS03300 PF10887 Protein of unknown function (DUF2686) SH08_RS03320 PF04965 Gene 25-like lysozyme SH08_RS03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS03325 PF03466 LysR substrate binding domain SH08_RS03330 PF01979 Amidohydrolase family SH08_RS03335 PF07670 Nucleoside recognition SH08_RS03340 PF07670 Nucleoside recognition SH08_RS03345 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family SH08_RS03350 PF06779 Uncharacterised MFS-type transporter YbfB SH08_RS03355 PF06977 SdiA-regulated SH08_RS03360 PF11823 Protein of unknown function (DUF3343) SH08_RS03365 PF01869 BadF/BadG/BcrA/BcrD ATPase family SH08_RS03370 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component SH08_RS03375 PF04286 Protein of unknown function (DUF445) SH08_RS03380 PF07690 Major Facilitator Superfamily SH08_RS03390 PF00155 Aminotransferase class I and II SH08_RS03390 PF00392 Bacterial regulatory proteins, gntR family SH08_RS03395 PF06568 Domain of unknown function (DUF1127) SH08_RS03410 PF10117 McrBC 5-methylcytosine restriction system component SH08_RS03415 PF12102 Domain of unknown function (DUF3578) SH08_RS03415 PF07728 AAA domain (dynein-related subfamily) SH08_RS03420 PF08845 Toxin SymE, type I toxin-antitoxin system SH08_RS03425 PF01420 Type I restriction modification DNA specificity domain SH08_RS03430 PF02384 N-6 DNA Methylase SH08_RS03435 PF04851 Type III restriction enzyme, res subunit SH08_RS03435 PF08463 EcoEI R protein C-terminal SH08_RS03435 PF00271 Helicase conserved C-terminal domain SH08_RS03435 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) SH08_RS03440 PF07690 Major Facilitator Superfamily SH08_RS03445 PF02909 Tetracyclin repressor-like, C-terminal domain SH08_RS03445 PF00440 Bacterial regulatory proteins, tetR family SH08_RS03450 PF04471 Restriction endonuclease SH08_RS03450 PF14338 Mrr N-terminal domain SH08_RS03455 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH08_RS03455 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH08_RS03460 PF04328 Selenoprotein, putative SH08_RS03465 PF13722 5TM C-terminal transporter carbon starvation CstA SH08_RS03465 PF02554 Carbon starvation protein CstA SH08_RS03475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH08_RS03475 PF00672 HAMP domain SH08_RS03475 PF02203 Tar ligand binding domain homologue SH08_RS03480 PF07690 Major Facilitator Superfamily SH08_RS03485 PF07729 FCD domain SH08_RS03485 PF00392 Bacterial regulatory proteins, gntR family SH08_RS03490 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS03490 PF00107 Zinc-binding dehydrogenase SH08_RS03495 PF00884 Sulfatase SH08_RS03500 PF10696 Protein of unknown function (DUF2501) SH08_RS03505 PF01695 IstB-like ATP binding protein SH08_RS03510 PF17948 DnaT DNA-binding domain SH08_RS03515 PF12821 Threonine/Serine exporter, ThrE SH08_RS03520 PF06738 Putative threonine/serine exporter SH08_RS03525 PF00196 Bacterial regulatory proteins, luxR family SH08_RS03530 PF00196 Bacterial regulatory proteins, luxR family SH08_RS03535 PF06276 Ferric iron reductase FhuF-like transporter SH08_RS03535 PF11575 FhuF 2Fe-2S C-terminal domain SH08_RS03540 PF07256 Protein of unknown function (DUF1435) SH08_RS03560 PF08468 Methyltransferase small domain N-terminal SH08_RS03560 PF05175 Methyltransferase small domain SH08_RS03565 PF03603 DNA polymerase III psi subunit SH08_RS03570 PF00583 Acetyltransferase (GNAT) family SH08_RS03575 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS03580 PF16658 Class II release factor RF3, C-terminal domain SH08_RS03580 PF03144 Elongation factor Tu domain 2 SH08_RS03580 PF00009 Elongation factor Tu GTP binding domain SH08_RS03585 PF04972 BON domain SH08_RS03590 PF07043 Protein of unknown function (DUF1328) SH08_RS03595 PF01734 Patatin-like phospholipase SH08_RS03600 PF01026 TatD related DNase SH08_RS03605 PF04055 Radical SAM superfamily SH08_RS03610 PF11230 Protein of unknown function (DUF3029) SH08_RS03620 PF01791 DeoC/LacD family aldolase SH08_RS03625 PF00591 Glycosyl transferase family, a/b domain SH08_RS03625 PF02885 Glycosyl transferase family, helical bundle domain SH08_RS03625 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain SH08_RS03630 PF01676 Metalloenzyme superfamily SH08_RS03635 PF01048 Phosphorylase superfamily SH08_RS03640 PF07804 HipA-like C-terminal domain SH08_RS03645 PF03099 Biotin/lipoate A/B protein ligase family SH08_RS03645 PF10437 Bacterial lipoate protein ligase C-terminus SH08_RS03650 PF10144 Bacterial virulence factor haemolysin SH08_RS03655 PF18429 Domain of unknown function (DUF5609) SH08_RS03660 PF18073 Rubredoxin metal binding domain SH08_RS03665 PF13521 AAA domain SH08_RS03665 PF01381 Helix-turn-helix SH08_RS03675 PF12848 ABC transporter SH08_RS03675 PF00005 ABC transporter SH08_RS03680 PF01464 Transglycosylase SLT domain SH08_RS03680 PF14718 Soluble lytic murein transglycosylase L domain SH08_RS03685 PF01371 Trp repressor protein SH08_RS03690 PF01931 Protein of unknown function DUF84 SH08_RS03695 PF00300 Histidine phosphatase superfamily (branch 1) SH08_RS03700 PF06445 GyrI-like small molecule binding domain SH08_RS03700 PF12833 Helix-turn-helix domain SH08_RS03705 PF05981 CreA protein SH08_RS03710 PF00072 Response regulator receiver domain SH08_RS03710 PF00486 Transcriptional regulatory protein, C terminal SH08_RS03715 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS03715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS03715 PF00672 HAMP domain SH08_RS03720 PF06123 Inner membrane protein CreD SH08_RS03725 PF00072 Response regulator receiver domain SH08_RS03725 PF00486 Transcriptional regulatory protein, C terminal SH08_RS03735 PF00588 SpoU rRNA Methylase family SH08_RS03740 PF08254 Threonine leader peptide SH08_RS03745 PF00742 Homoserine dehydrogenase SH08_RS03745 PF03447 Homoserine dehydrogenase, NAD binding domain SH08_RS03745 PF13840 ACT domain SH08_RS03745 PF00696 Amino acid kinase family SH08_RS03745 PF01842 ACT domain SH08_RS03750 PF08544 GHMP kinases C terminal SH08_RS03750 PF00288 GHMP kinases N terminal domain SH08_RS03755 PF00291 Pyridoxal-phosphate dependent enzyme SH08_RS03755 PF14821 Threonine synthase N terminus SH08_RS03765 PF10697 Protein of unknown function (DUF2502) SH08_RS03770 PF03883 Peroxide stress protein YaaA SH08_RS03775 PF01235 Sodium:alanine symporter family SH08_RS03780 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH08_RS03785 PF00994 Probable molybdopterin binding domain SH08_RS03790 PF01184 GPR1/FUN34/yaaH family SH08_RS03795 PF13099 Domain of unknown function (DUF3944) SH08_RS03795 PF03981 Ubiquinol-cytochrome C chaperone SH08_RS03800 PF10807 Protein of unknown function (DUF2541) SH08_RS03805 PF00012 Hsp70 protein SH08_RS03810 PF00226 DnaJ domain SH08_RS03810 PF00684 DnaJ central domain SH08_RS03810 PF01556 DnaJ C terminal domain SH08_RS03815 PF01609 Transposase DDE domain SH08_RS03820 PF01848 Hok/gef family SH08_RS03825 PF06965 Na+/H+ antiporter 1 SH08_RS03830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS03830 PF03466 LysR substrate binding domain SH08_RS03835 PF03400 IS1 transposase SH08_RS03840 PF01649 Ribosomal protein S20 SH08_RS03845 PF10837 Protein of unknown function (DUF2575) SH08_RS03850 PF01687 Riboflavin kinase SH08_RS03850 PF06574 FAD synthetase SH08_RS03855 PF08264 Anticodon-binding domain of tRNA SH08_RS03855 PF00133 tRNA synthetases class I (I, L, M and V) SH08_RS03855 PF06827 Zinc finger found in FPG and IleRS SH08_RS03860 PF01252 Signal peptidase (SPase) II SH08_RS03865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH08_RS03870 PF02401 LytB protein SH08_RS03875 PF01156 Inosine-uridine preferring nucleoside hydrolase SH08_RS03880 PF05173 Dihydrodipicolinate reductase, C-terminus SH08_RS03880 PF01113 Dihydrodipicolinate reductase, N-terminus SH08_RS03895 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain SH08_RS03895 PF00117 Glutamine amidotransferase class-I SH08_RS03900 PF02142 MGS-like domain SH08_RS03900 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SH08_RS03900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH08_RS03910 PF07180 CaiF/GrlA transcriptional regulator SH08_RS03915 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS03920 PF00378 Enoyl-CoA hydratase/isomerase SH08_RS03925 PF00501 AMP-binding enzyme SH08_RS03925 PF13193 AMP-binding enzyme C-terminal domain SH08_RS03930 PF02515 CoA-transferase family III SH08_RS03935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH08_RS03935 PF02770 Acyl-CoA dehydrogenase, middle domain SH08_RS03935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH08_RS03940 PF02028 BCCT, betaine/carnitine/choline family transporter SH08_RS03945 PF01012 Electron transfer flavoprotein domain SH08_RS03950 PF01012 Electron transfer flavoprotein domain SH08_RS03950 PF00766 Electron transfer flavoprotein FAD-binding domain SH08_RS03955 PF01494 FAD binding domain SH08_RS03965 PF00083 Sugar (and other) transporter SH08_RS03970 PF02525 Flavodoxin-like fold SH08_RS03975 PF00999 Sodium/hydrogen exchanger family SH08_RS03975 PF02254 TrkA-N domain SH08_RS03980 PF00186 Dihydrofolate reductase SH08_RS03985 PF00149 Calcineurin-like phosphoesterase SH08_RS03990 PF04379 ApaG domain SH08_RS03995 PF00398 Ribosomal RNA adenine dimethylase SH08_RS04000 PF04166 Pyridoxal phosphate biosynthetic protein PdxA SH08_RS04005 PF00639 PPIC-type PPIASE domain SH08_RS04005 PF09312 SurA N-terminal domain SH08_RS04010 PF04453 LPS transport system D SH08_RS04010 PF03968 OstA-like protein SH08_RS04015 PF05099 Tellurite resistance protein TerB SH08_RS04015 PF00226 DnaJ domain SH08_RS04025 PF00849 RNA pseudouridylate synthase SH08_RS04030 PF18339 RapA N-terminal Tudor like domain 1 SH08_RS04030 PF00176 SNF2 family N-terminal domain SH08_RS04030 PF18337 RapA N-terminal Tudor like domain SH08_RS04030 PF12137 RNA polymerase recycling family C-terminal SH08_RS04030 PF00271 Helicase conserved C-terminal domain SH08_RS04035 PF00136 DNA polymerase family B SH08_RS04035 PF03104 DNA polymerase family B, exonuclease domain SH08_RS04040 PF00596 Class II Aldolase and Adducin N-terminal domain SH08_RS04045 PF11762 L-arabinose isomerase C-terminal domain SH08_RS04045 PF02610 L-arabinose isomerase SH08_RS04050 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH08_RS04055 PF02311 AraC-like ligand binding domain SH08_RS04055 PF12833 Helix-turn-helix domain SH08_RS04060 PF09335 SNARE associated Golgi protein SH08_RS04065 PF00005 ABC transporter SH08_RS04070 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS04080 PF12793 Sugar transport-related sRNA regulator N-term SH08_RS04080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS04090 PF07690 Major Facilitator Superfamily SH08_RS04095 PF00694 Aconitase C-terminal domain SH08_RS04100 PF00330 Aconitase family (aconitate hydratase) SH08_RS04105 PF00180 Isocitrate/isopropylmalate dehydrogenase SH08_RS04110 PF08502 LeuA allosteric (dimerisation) domain SH08_RS04110 PF00682 HMGL-like SH08_RS04115 PF08054 Leucine operon leader peptide SH08_RS04120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS04120 PF03466 LysR substrate binding domain SH08_RS04125 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH08_RS04125 PF00205 Thiamine pyrophosphate enzyme, central domain SH08_RS04125 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH08_RS04130 PF10369 Small subunit of acetolactate synthase SH08_RS04140 PF00356 Bacterial regulatory proteins, lacI family SH08_RS04140 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH08_RS04145 PF02381 MraZ protein, putative antitoxin-like SH08_RS04150 PF01795 MraW methylase family SH08_RS04155 PF04999 Cell division protein FtsL SH08_RS04160 PF00905 Penicillin binding protein transpeptidase domain SH08_RS04160 PF03717 Penicillin-binding Protein dimerisation domain SH08_RS04165 PF08245 Mur ligase middle domain SH08_RS04165 PF02875 Mur ligase family, glutamate ligase domain SH08_RS04165 PF01225 Mur ligase family, catalytic domain SH08_RS04170 PF02875 Mur ligase family, glutamate ligase domain SH08_RS04170 PF08245 Mur ligase middle domain SH08_RS04170 PF01225 Mur ligase family, catalytic domain SH08_RS04175 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 SH08_RS04175 PF00953 Glycosyl transferase family 4 SH08_RS04180 PF02875 Mur ligase family, glutamate ligase domain SH08_RS04180 PF08245 Mur ligase middle domain SH08_RS04185 PF01098 Cell cycle protein SH08_RS04190 PF04101 Glycosyltransferase family 28 C-terminal domain SH08_RS04190 PF03033 Glycosyltransferase family 28 N-terminal domain SH08_RS04195 PF02875 Mur ligase family, glutamate ligase domain SH08_RS04195 PF08245 Mur ligase middle domain SH08_RS04195 PF01225 Mur ligase family, catalytic domain SH08_RS04200 PF01820 D-ala D-ala ligase N-terminus SH08_RS04200 PF07478 D-ala D-ala ligase C-terminus SH08_RS04205 PF03799 Cell division protein FtsQ SH08_RS04205 PF08478 POTRA domain, FtsQ-type SH08_RS04210 PF02491 SHS2 domain inserted in FTSA SH08_RS04215 PF12327 FtsZ family, C-terminal domain SH08_RS04215 PF00091 Tubulin/FtsZ family, GTPase domain SH08_RS04220 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase SH08_RS04225 PF06558 Secretion monitor precursor protein (SecM) SH08_RS04230 PF02810 SEC-C motif SH08_RS04230 PF01043 SecA preprotein cross-linking domain SH08_RS04230 PF07516 SecA Wing and Scaffold domain SH08_RS04230 PF07517 SecA DEAD-like domain SH08_RS04235 PF00293 NUDIX domain SH08_RS04245 PF03884 DNA gyrase inhibitor YacG SH08_RS04250 PF07072 Cell division protein SH08_RS04255 PF01121 Dephospho-CoA kinase SH08_RS04260 PF00478 IMP dehydrogenase / GMP reductase domain SH08_RS04265 PF00482 Type II secretion system (T2SS), protein F SH08_RS04270 PF00437 Type II/IV secretion system protein SH08_RS04270 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH08_RS04275 PF07963 Prokaryotic N-terminal methylation motif SH08_RS04285 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain SH08_RS04285 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain SH08_RS04290 PF01510 N-acetylmuramoyl-L-alanine amidase SH08_RS04295 PF17113 Regulatory signalling modulator protein AmpE SH08_RS04300 PF00324 Amino acid permease SH08_RS04305 PF00392 Bacterial regulatory proteins, gntR family SH08_RS04305 PF07729 FCD domain SH08_RS04310 PF00456 Transketolase, thiamine diphosphate binding domain SH08_RS04310 PF17831 Pyruvate dehydrogenase E1 component middle domain SH08_RS04315 PF02817 e3 binding domain SH08_RS04315 PF00364 Biotin-requiring enzyme SH08_RS04315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH08_RS04320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH08_RS04320 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS04325 PF11737 Protein of unknown function (DUF3300) SH08_RS04330 PF11791 Aconitate B N-terminal domain SH08_RS04330 PF06434 Aconitate hydratase 2 N-terminus SH08_RS04330 PF00330 Aconitase family (aconitate hydratase) SH08_RS04335 PF06062 Uncharacterised protein family (UPF0231) SH08_RS04340 PF02675 S-adenosylmethionine decarboxylase SH08_RS04345 PF17284 Spermidine synthase tetramerisation domain SH08_RS04350 PF09691 Type II secretion system pilotin lipoprotein (PulS_OutS) SH08_RS04355 PF00394 Multicopper oxidase SH08_RS04355 PF07732 Multicopper oxidase SH08_RS04355 PF07731 Multicopper oxidase SH08_RS04360 PF01011 PQQ enzyme repeat SH08_RS04365 PF00156 Phosphoribosyl transferase domain SH08_RS04370 PF00484 Carbonic anhydrase SH08_RS04375 PF00005 ABC transporter SH08_RS04380 PF01061 ABC-2 type transporter SH08_RS04385 PF03610 PTS system fructose IIA component SH08_RS04390 PF01522 Polysaccharide deacetylase SH08_RS04395 PF02261 Aspartate decarboxylase SH08_RS04400 PF04754 Putative transposase, YhgA-like SH08_RS04405 PF02569 Pantoate-beta-alanine ligase SH08_RS04410 PF02548 Ketopantoate hydroxymethyltransferase SH08_RS04415 PF00419 Fimbrial protein SH08_RS04420 PF00419 Fimbrial protein SH08_RS04425 PF00419 Fimbrial protein SH08_RS04430 PF00419 Fimbrial protein SH08_RS04435 PF13953 PapC C-terminal domain SH08_RS04435 PF13954 PapC N-terminal domain SH08_RS04435 PF00577 Outer membrane usher protein SH08_RS04440 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS04440 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS04445 PF00419 Fimbrial protein SH08_RS04450 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) SH08_RS04455 PF12626 Polymerase A arginine-rich C-terminus SH08_RS04455 PF12627 Probable RNA and SrmB- binding site of polymerase A SH08_RS04455 PF01743 Poly A polymerase head domain SH08_RS04460 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH08_RS04465 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH08_RS04470 PF17746 SfsA N-terminal OB domain SH08_RS04470 PF03749 Sugar fermentation stimulation protein RE domain SH08_RS04475 PF02834 LigT like Phosphoesterase SH08_RS04480 PF08482 ATP-dependent helicase C-terminal SH08_RS04480 PF00270 DEAD/DEAH box helicase SH08_RS04480 PF04408 Helicase associated domain (HA2) SH08_RS04480 PF00271 Helicase conserved C-terminal domain SH08_RS04490 PF00912 Transglycosylase SH08_RS04490 PF14812 Transmembrane domain of transglycosylase PBP1 at N-terminal SH08_RS04490 PF14814 Bifunctional transglycosylase second domain SH08_RS04490 PF00905 Penicillin binding protein transpeptidase domain SH08_RS04495 PF00593 TonB dependent receptor SH08_RS04495 PF07715 TonB-dependent Receptor Plug Domain SH08_RS04500 PF13276 HTH-like domain SH08_RS04500 PF00665 Integrase core domain SH08_RS04505 PF01527 Transposase SH08_RS04510 PF00593 TonB dependent receptor SH08_RS04510 PF07715 TonB-dependent Receptor Plug Domain SH08_RS04515 PF00005 ABC transporter SH08_RS04520 PF01497 Periplasmic binding protein SH08_RS04525 PF01032 FecCD transport family SH08_RS04530 PF00202 Aminotransferase class-III SH08_RS04535 PF00654 Voltage gated chloride channel SH08_RS04540 PF01521 Iron-sulphur cluster biosynthesis SH08_RS04545 PF03458 UPF0126 domain SH08_RS04550 PF01497 Periplasmic binding protein SH08_RS04555 PF01048 Phosphorylase superfamily SH08_RS04560 PF13286 Phosphohydrolase-associated domain SH08_RS04560 PF01966 HD domain SH08_RS04565 PF00595 PDZ domain SH08_RS04570 PF17853 GGDEF-like domain SH08_RS04570 PF05651 Putative sugar diacid recognition SH08_RS04570 PF13556 PucR C-terminal helix-turn-helix domain SH08_RS04575 PF11944 Protein of unknown function (DUF3461) SH08_RS04580 PF00149 Calcineurin-like phosphoesterase SH08_RS04585 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS04585 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal SH08_RS04585 PF14602 Hexapeptide repeat of succinyl-transferase SH08_RS04590 PF01909 Nucleotidyltransferase domain SH08_RS04590 PF08335 GlnD PII-uridylyltransferase SH08_RS04590 PF01842 ACT domain SH08_RS04590 PF01966 HD domain SH08_RS04595 PF00557 Metallopeptidase family M24 SH08_RS04600 PF00318 Ribosomal protein S2 SH08_RS04605 PF00889 Elongation factor TS SH08_RS04610 PF00696 Amino acid kinase family SH08_RS04615 PF01765 Ribosome recycling factor SH08_RS04620 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain SH08_RS04620 PF13288 DXP reductoisomerase C-terminal domain SH08_RS04620 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase SH08_RS04625 PF01255 Putative undecaprenyl diphosphate synthase SH08_RS04635 PF17820 PDZ domain SH08_RS04635 PF02163 Peptidase family M50 SH08_RS04640 PF07244 Surface antigen variable number repeat SH08_RS04640 PF01103 Surface antigen SH08_RS04645 PF03938 Outer membrane protein (OmpH-like) SH08_RS04650 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD SH08_RS04650 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS04655 PF07977 FabA-like domain SH08_RS04660 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS04660 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 SH08_RS04665 PF02684 Lipid-A-disaccharide synthetase SH08_RS04670 PF01351 Ribonuclease HII SH08_RS04675 PF01336 OB-fold nucleic acid binding domain SH08_RS04675 PF07733 Bacterial DNA polymerase III alpha NTPase domain SH08_RS04675 PF02811 PHP domain SH08_RS04675 PF14579 Helix-hairpin-helix motif SH08_RS04675 PF17657 Bacterial DNA polymerase III alpha subunit finger domain SH08_RS04680 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit SH08_RS04685 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH08_RS04685 PF01276 Orn/Lys/Arg decarboxylase, major domain SH08_RS04685 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH08_RS04690 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH08_RS04695 PF11734 TilS substrate C-terminal domain SH08_RS04695 PF09179 TilS substrate binding domain SH08_RS04695 PF01171 PP-loop family SH08_RS04700 PF07073 Modulator of Rho-dependent transcription termination (ROF) SH08_RS04705 PF06786 Uncharacterised protein family (UPF0253) SH08_RS04710 PF07152 YaeQ protein SH08_RS04715 PF00472 RF-1 domain SH08_RS04720 PF04170 NlpE N-terminal domain SH08_RS04720 PF17185 NlpE C-terminal OB domain SH08_RS04725 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH08_RS04730 PF04073 Aminoacyl-tRNA editing domain SH08_RS04730 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH08_RS04730 PF03129 Anticodon binding domain SH08_RS04735 PF18389 TrmO C-terminal domain SH08_RS04735 PF01980 tRNA-methyltransferase O SH08_RS04740 PF16358 RcsF lipoprotein SH08_RS04745 PF03180 NLPA lipoprotein SH08_RS04750 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS04755 PF00005 ABC transporter SH08_RS04755 PF09383 NIL domain SH08_RS04795 PF00248 Aldo/keto reductase family SH08_RS04800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS04800 PF03466 LysR substrate binding domain SH08_RS04805 PF03372 Endonuclease/Exonuclease/phosphatase family SH08_RS04810 PF08241 Methyltransferase domain SH08_RS04815 PF01476 LysM domain SH08_RS04815 PF01464 Transglycosylase SLT domain SH08_RS04820 PF16123 Hydroxyacylglutathione hydrolase C-terminus SH08_RS04820 PF00753 Metallo-beta-lactamase superfamily SH08_RS04825 PF08241 Methyltransferase domain SH08_RS04830 PF00075 RNase H SH08_RS04835 PF00929 Exonuclease SH08_RS04860 PF13808 DDE_Tnp_1-associated SH08_RS04860 PF01609 Transposase DDE domain SH08_RS04865 PF00795 Carbon-nitrogen hydrolase SH08_RS04875 PF09317 Domain of unknown function (DUF1974) SH08_RS04875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH08_RS04875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH08_RS04875 PF02770 Acyl-CoA dehydrogenase, middle domain SH08_RS04880 PF13580 SIS domain SH08_RS04885 PF13230 Glutamine amidotransferases class-II SH08_RS04890 PF03734 L,D-transpeptidase catalytic domain SH08_RS04895 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ SH08_RS04900 PF04221 RelB antitoxin SH08_RS04905 PF00877 NlpC/P60 family SH08_RS04915 PF00771 FHIPEP family SH08_RS04920 PF00691 OmpA family SH08_RS04920 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH08_RS04925 PF00817 impB/mucB/samB family SH08_RS04925 PF11799 impB/mucB/samB family C-terminal domain SH08_RS04925 PF11798 IMS family HHH motif SH08_RS04935 PF13957 Toxin YafO, type II toxin-antitoxin system SH08_RS04940 PF13673 Acetyltransferase (GNAT) domain SH08_RS04950 PF00472 RF-1 domain SH08_RS04955 PF07687 Peptidase dimerisation domain SH08_RS04955 PF01546 Peptidase family M20/M25/M40 SH08_RS04960 PF00156 Phosphoribosyl transferase domain SH08_RS04965 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) SH08_RS04970 PF07417 Sigma factor-binding transcriptional regulator Crl SH08_RS04975 PF00267 Gram-negative porin SH08_RS04980 PF00696 Amino acid kinase family SH08_RS04980 PF01472 PUA domain SH08_RS04985 PF00171 Aldehyde dehydrogenase family SH08_RS04995 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH08_RS05000 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH08_RS05005 PF04002 RadC-like JAB domain SH08_RS05010 PF03230 Antirestriction protein SH08_RS05015 PF06006 Bacterial protein of unknown function (DUF905) SH08_RS05035 PF06067 Domain of unknown function (DUF932) SH08_RS05040 PF01926 50S ribosome-binding GTPase SH08_RS05045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS05045 PF03466 LysR substrate binding domain SH08_RS05050 PF01527 Transposase SH08_RS05055 PF13936 Helix-turn-helix domain SH08_RS05055 PF00665 Integrase core domain SH08_RS05075 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) SH08_RS05080 PF05598 Transposase domain (DUF772) SH08_RS05080 PF01609 Transposase DDE domain SH08_RS05085 PF00324 Amino acid permease SH08_RS05090 PF02574 Homocysteine S-methyltransferase SH08_RS05095 PF08402 TOBE domain SH08_RS05095 PF00005 ABC transporter SH08_RS05100 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS05105 PF03400 IS1 transposase SH08_RS05110 PF03811 InsA N-terminal domain SH08_RS05110 PF12759 InsA C-terminal domain SH08_RS05115 PF01527 Transposase SH08_RS05120 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH08_RS05125 PF00665 Integrase core domain SH08_RS05130 PF00701 Dihydrodipicolinate synthetase family SH08_RS05135 PF00920 Dehydratase family SH08_RS05145 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain SH08_RS05145 PF04616 Glycosyl hydrolases family 43 SH08_RS05150 PF09339 IclR helix-turn-helix domain SH08_RS05150 PF01614 Bacterial transcriptional regulator SH08_RS05155 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH08_RS05155 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH08_RS05160 PF03400 IS1 transposase SH08_RS05175 PF07638 ECF sigma factor SH08_RS05195 PF00589 Phage integrase family SH08_RS05195 PF13356 Arm DNA-binding domain SH08_RS05205 PF03466 LysR substrate binding domain SH08_RS05210 PF13478 XdhC Rossmann domain SH08_RS05210 PF02625 XdhC and CoxI family SH08_RS05215 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH08_RS05215 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH08_RS05220 PF00941 FAD binding domain in molybdopterin dehydrogenase SH08_RS05220 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH08_RS05225 PF00111 2Fe-2S iron-sulfur cluster binding domain SH08_RS05225 PF01799 [2Fe-2S] binding domain SH08_RS05230 PF07274 Protein of unknown function (DUF1440) SH08_RS05235 PF03692 Putative zinc- or iron-chelating domain SH08_RS05250 PF15976 CS1-pili formation C-terminal SH08_RS05250 PF16967 E-set like domain SH08_RS05255 PF18649 EcpB C-terminal domain SH08_RS05260 PF16449 Fimbrillin MatB SH08_RS05265 PF00196 Bacterial regulatory proteins, luxR family SH08_RS05275 PF00444 Ribosomal protein L36 SH08_RS05280 PF01197 Ribosomal protein L31 SH08_RS05290 PF11924 Inverse autotransporter, beta-domain SH08_RS05295 PF01527 Transposase SH08_RS05300 PF13276 HTH-like domain SH08_RS05300 PF13333 Integrase core domain SH08_RS05300 PF00665 Integrase core domain SH08_RS05305 PF12833 Helix-turn-helix domain SH08_RS05310 PF04224 Protein of unknown function, DUF417 SH08_RS05315 PF07338 Protein of unknown function (DUF1471) SH08_RS05320 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH08_RS05320 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS05325 PF12852 Cupin SH08_RS05325 PF12833 Helix-turn-helix domain SH08_RS05330 PF02754 Cysteine-rich domain SH08_RS05335 PF13183 4Fe-4S dicluster domain SH08_RS05335 PF11870 Domain of unknown function (DUF3390) SH08_RS05335 PF02589 LUD domain SH08_RS05340 PF02589 LUD domain SH08_RS05355 PF00732 GMC oxidoreductase SH08_RS05355 PF05199 GMC oxidoreductase SH08_RS05360 PF00171 Aldehyde dehydrogenase family SH08_RS05365 PF00440 Bacterial regulatory proteins, tetR family SH08_RS05365 PF13977 BetI-type transcriptional repressor, C-terminal SH08_RS05370 PF02028 BCCT, betaine/carnitine/choline family transporter SH08_RS05380 PF00563 EAL domain SH08_RS05380 PF00196 Bacterial regulatory proteins, luxR family SH08_RS05385 PF03466 LysR substrate binding domain SH08_RS05385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS05390 PF06496 Protein of unknown function (DUF1097) SH08_RS05395 PF12796 Ankyrin repeats (3 copies) SH08_RS05400 PF11392 Protein of unknown function (DUF2877) SH08_RS05405 PF00549 CoA-ligase SH08_RS05405 PF02629 CoA binding domain SH08_RS05410 PF06545 Protein of unknown function (DUF1116) SH08_RS05420 PF00696 Amino acid kinase family SH08_RS05425 PF07969 Amidohydrolase family SH08_RS05430 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS05430 PF00107 Zinc-binding dehydrogenase SH08_RS05445 PF01810 LysE type translocator SH08_RS05450 PF07338 Protein of unknown function (DUF1471) SH08_RS05455 PF02954 Bacterial regulatory protein, Fis family SH08_RS05455 PF06506 Propionate catabolism activator SH08_RS05455 PF00158 Sigma-54 interaction domain SH08_RS05465 PF00285 Citrate synthase, C-terminal domain SH08_RS05470 PF03972 MmgE/PrpD family SH08_RS05475 PF16177 Acetyl-coenzyme A synthetase N-terminus SH08_RS05475 PF13193 AMP-binding enzyme C-terminal domain SH08_RS05475 PF00501 AMP-binding enzyme SH08_RS05480 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH08_RS05485 PF07969 Amidohydrolase family SH08_RS05490 PF03466 LysR substrate binding domain SH08_RS05490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS05495 PF00484 Carbonic anhydrase SH08_RS05500 PF02560 Cyanate lyase C-terminal domain SH08_RS05505 PF07690 Major Facilitator Superfamily SH08_RS05510 PF12464 Maltose acetyltransferase SH08_RS05510 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS05515 PF01306 LacY proton/sugar symporter SH08_RS05520 PF16353 Domain of unknown function(DUF4981) SH08_RS05520 PF00703 Glycosyl hydrolases family 2 SH08_RS05520 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH08_RS05520 PF02929 Beta galactosidase small chain SH08_RS05520 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH08_RS05525 PF00356 Bacterial regulatory proteins, lacI family SH08_RS05530 PF09339 IclR helix-turn-helix domain SH08_RS05530 PF01614 Bacterial transcriptional regulator SH08_RS05535 PF01494 FAD binding domain SH08_RS05540 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH08_RS05545 PF12697 Alpha/beta hydrolase family SH08_RS05550 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH08_RS05555 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation SH08_RS05555 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH08_RS05560 PF00682 HMGL-like SH08_RS05560 PF07836 DmpG-like communication domain SH08_RS05565 PF07690 Major Facilitator Superfamily SH08_RS05570 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) SH08_RS05575 PF00756 Putative esterase SH08_RS05580 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS05580 PF00107 Zinc-binding dehydrogenase SH08_RS05585 PF02583 Metal-sensitive transcriptional repressor SH08_RS05595 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS05600 PF01527 Transposase SH08_RS05605 PF00665 Integrase core domain SH08_RS05605 PF13276 HTH-like domain SH08_RS05610 PF00535 Glycosyl transferase family 2 SH08_RS05615 PF02585 GlcNAc-PI de-N-acetylase SH08_RS05620 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH08_RS05625 PF00005 ABC transporter SH08_RS05630 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS05635 PF02668 Taurine catabolism dioxygenase TauD, TfdA family SH08_RS05640 PF00490 Delta-aminolevulinic acid dehydratase SH08_RS05655 PF00665 Integrase core domain SH08_RS05655 PF13276 HTH-like domain SH08_RS05655 PF13333 Integrase core domain SH08_RS05660 PF01527 Transposase SH08_RS05665 PF03212 Pertactin SH08_RS05665 PF03797 Autotransporter beta-domain SH08_RS05670 PF15977 Winged helix-turn-helix DNA binding SH08_RS05675 PF00144 Beta-lactamase SH08_RS05685 PF05992 SbmA/BacA-like family SH08_RS05690 PF07759 Protein of unknown function (DUF1615) SH08_RS05695 PF10954 Protein of unknown function (DUF2755) SH08_RS05700 PF10953 Protein of unknown function (DUF2754) SH08_RS05705 PF07478 D-ala D-ala ligase C-terminus SH08_RS05705 PF01820 D-ala D-ala ligase N-terminus SH08_RS05715 PF10796 Sigma-S stabilisation anti-adaptor protein SH08_RS05720 PF00245 Alkaline phosphatase SH08_RS05725 PF07769 psiF repeat SH08_RS05730 PF05230 MASE2 domain SH08_RS05730 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS05735 PF03807 NADP oxidoreductase coenzyme F420-dependent SH08_RS05735 PF14748 Pyrroline-5-carboxylate reductase dimerisation SH08_RS05740 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 SH08_RS05745 PF01202 Shikimate kinase SH08_RS05750 PF16362 YaiA protein SH08_RS05760 PF07302 AroM protein SH08_RS05765 PF06865 Pyrimidine/purine nucleoside phosphorylase SH08_RS05770 PF10971 Protein of unknown function (DUF2773) SH08_RS05775 PF04381 Putative exonuclease, RdgC SH08_RS05780 PF00480 ROK family SH08_RS05785 PF07690 Major Facilitator Superfamily SH08_RS05790 PF13476 AAA domain SH08_RS05795 PF00149 Calcineurin-like phosphoesterase SH08_RS05795 PF12320 Type 5 capsule protein repressor C-terminal domain SH08_RS05800 PF00072 Response regulator receiver domain SH08_RS05800 PF00486 Transcriptional regulatory protein, C terminal SH08_RS05805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS05805 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS05805 PF00989 PAS fold SH08_RS05805 PF11808 Phosphate regulon sensor protein PhoR SH08_RS05810 PF05525 Branched-chain amino acid transport protein SH08_RS05815 PF00324 Amino acid permease SH08_RS05820 PF02903 Alpha amylase, N-terminal ig-like domain SH08_RS05820 PF00128 Alpha amylase, catalytic domain SH08_RS05825 PF04336 Acyl carrier protein phosphodiesterase SH08_RS05830 PF02547 Queuosine biosynthesis protein SH08_RS05835 PF01702 Queuine tRNA-ribosyltransferase SH08_RS05840 PF02699 Preprotein translocase subunit SH08_RS05845 PF13721 SecD export protein N-terminal TM region SH08_RS05845 PF02355 Protein export membrane protein SH08_RS05845 PF07549 SecD/SecF GG Motif SH08_RS05850 PF02355 Protein export membrane protein SH08_RS05850 PF07549 SecD/SecF GG Motif SH08_RS05855 PF01844 HNH endonuclease SH08_RS05865 PF03502 Nucleoside-specific channel-forming protein, Tsx SH08_RS05870 PF11622 Protein of unknown function (DUF3251) SH08_RS05875 PF03477 ATP cone domain SH08_RS05880 PF01872 RibD C-terminal domain SH08_RS05880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH08_RS05885 PF00885 6,7-dimethyl-8-ribityllumazine synthase SH08_RS05890 PF01029 NusB family SH08_RS05895 PF02769 AIR synthase related protein, C-terminal domain SH08_RS05895 PF00586 AIR synthase related protein, N-terminal domain SH08_RS05900 PF04608 Phosphatidylglycerophosphatase A SH08_RS05905 PF00248 Aldo/keto reductase family SH08_RS05910 PF02779 Transketolase, pyrimidine binding domain SH08_RS05910 PF13292 1-deoxy-D-xylulose-5-phosphate synthase SH08_RS05910 PF02780 Transketolase, C-terminal domain SH08_RS05915 PF00348 Polyprenyl synthetase SH08_RS05920 PF02609 Exonuclease VII small subunit SH08_RS05925 PF02568 Thiamine biosynthesis protein (ThiI) SH08_RS05925 PF02926 THUMP domain SH08_RS05930 PF01965 DJ-1/PfpI family SH08_RS05935 PF08546 Ketopantoate reductase PanE/ApbA C terminal SH08_RS05935 PF02558 Ketopantoate reductase PanE/ApbA SH08_RS05940 PF04461 Protein of unknown function (DUF520) SH08_RS05945 PF07690 Major Facilitator Superfamily SH08_RS05950 PF01040 UbiA prenyltransferase family SH08_RS05955 PF03626 Prokaryotic Cytochrome C oxidase subunit IV SH08_RS05960 PF00510 Cytochrome c oxidase subunit III SH08_RS05965 PF00115 Cytochrome C and Quinol oxidase polypeptide I SH08_RS05970 PF06481 COX Aromatic Rich Motif SH08_RS05970 PF00116 Cytochrome C oxidase subunit II, periplasmic domain SH08_RS05975 PF07690 Major Facilitator Superfamily SH08_RS05980 PF08139 Prokaryotic membrane lipoprotein lipid attachment site SH08_RS05980 PF03923 Uncharacterized lipoprotein SH08_RS05985 PF01722 BolA-like protein SH08_RS05995 PF05698 Bacterial trigger factor protein (TF) C-terminus SH08_RS05995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH08_RS05995 PF05697 Bacterial trigger factor protein (TF) SH08_RS06000 PF00574 Clp protease SH08_RS06005 PF10431 C-terminal, D2-small domain, of ClpB protein SH08_RS06005 PF06689 ClpX C4-type zinc finger SH08_RS06005 PF07724 AAA domain (Cdc48 subfamily) SH08_RS06010 PF05362 Lon protease (S16) C-terminal proteolytic domain SH08_RS06010 PF02190 ATP-dependent protease La (LON) substrate-binding domain SH08_RS06010 PF00004 ATPase family associated with various cellular activities (AAA) SH08_RS06015 PF00216 Bacterial DNA-binding protein SH08_RS06020 PF13145 PPIC-type PPIASE domain SH08_RS06035 PF06508 Queuosine biosynthesis protein QueC SH08_RS06040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS06040 PF12793 Sugar transport-related sRNA regulator N-term SH08_RS06050 PF01037 Lrp/AsnC ligand binding domain SH08_RS06050 PF13404 AsnC-type helix-turn-helix domain SH08_RS06055 PF00664 ABC transporter transmembrane region SH08_RS06055 PF00005 ABC transporter SH08_RS06060 PF00005 ABC transporter SH08_RS06060 PF00664 ABC transporter transmembrane region SH08_RS06065 PF00543 Nitrogen regulatory protein P-II SH08_RS06070 PF00909 Ammonium Transporter Family SH08_RS06080 PF09619 Type III secretion system lipoprotein chaperone (YscW) SH08_RS06085 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH08_RS06090 PF07237 Protein of unknown function (DUF1428) SH08_RS06095 PF12792 CSS motif domain associated with EAL SH08_RS06095 PF00563 EAL domain SH08_RS06100 PF10777 Inner membrane protein YlaC SH08_RS06105 PF12464 Maltose acetyltransferase SH08_RS06105 PF14602 Hexapeptide repeat of succinyl-transferase SH08_RS06110 PF05321 Haemolysin expression modulating protein SH08_RS06115 PF10757 Biofilm formation regulator YbaJ SH08_RS06120 PF00873 AcrB/AcrD/AcrF family SH08_RS06125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS06125 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS06130 PF00440 Bacterial regulatory proteins, tetR family SH08_RS06130 PF08361 MAATS-type transcriptional repressor, C-terminal region SH08_RS06135 PF12795 Mechanosensitive ion channel porin domain SH08_RS06135 PF00924 Mechanosensitive ion channel SH08_RS06135 PF12794 Mechanosensitive ion channel inner membrane domain 1 SH08_RS06145 PF10689 Protein of unknown function (DUF2496) SH08_RS06150 PF07445 Primosomal replication protein priC SH08_RS06155 PF04304 Protein of unknown function (DUF454) SH08_RS06160 PF00156 Phosphoribosyl transferase domain SH08_RS06165 PF12170 DNA polymerase III tau subunit V interacting with alpha SH08_RS06165 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding SH08_RS06165 PF12169 DNA polymerase III subunits gamma and tau domain III SH08_RS06170 PF02575 YbaB/EbfC DNA-binding family SH08_RS06175 PF13662 Toprim domain SH08_RS06175 PF02132 RecR protein SH08_RS06180 PF00183 Hsp90 protein SH08_RS06180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS06185 PF05191 Adenylate kinase, active site lid SH08_RS06190 PF00762 Ferrochelatase SH08_RS06195 PF07859 alpha/beta hydrolase fold SH08_RS06200 PF00294 pfkB family carbohydrate kinase SH08_RS06205 PF02254 TrkA-N domain SH08_RS06205 PF00999 Sodium/hydrogen exchanger family SH08_RS06210 PF07690 Major Facilitator Superfamily SH08_RS06215 PF02872 5'-nucleotidase, C-terminal domain SH08_RS06215 PF00149 Calcineurin-like phosphoesterase SH08_RS06220 PF04073 Aminoacyl-tRNA editing domain SH08_RS06225 PF01963 TraB family SH08_RS06230 PF01381 Helix-turn-helix SH08_RS06235 PF00403 Heavy-metal-associated domain SH08_RS06240 PF04960 Glutaminase SH08_RS06245 PF13520 Amino acid permease SH08_RS06250 PF13411 MerR HTH family regulatory protein SH08_RS06255 PF01957 NfeD-like C-terminal, partner-binding SH08_RS06260 PF16200 C-terminal region of band_7 SH08_RS06260 PF01145 SPFH domain / Band 7 family SH08_RS06265 PF00005 ABC transporter SH08_RS06270 PF03649 Uncharacterised protein family (UPF0014) SH08_RS06275 PF00085 Thioredoxin SH08_RS06280 PF00106 short chain dehydrogenase SH08_RS06285 PF13472 GDSL-like Lipase/Acylhydrolase family SH08_RS06290 PF00005 ABC transporter SH08_RS06300 PF14220 Domain of unknown function (DUF4329) SH08_RS06300 PF03527 RHS protein SH08_RS06300 PF05593 RHS Repeat SH08_RS06305 PF15631 NTF2 fold immunity protein SH08_RS06310 PF03527 RHS protein SH08_RS06330 PF03466 LysR substrate binding domain SH08_RS06330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS06335 PF04115 Ureidoglycolate lyase SH08_RS06340 PF01614 Bacterial transcriptional regulator SH08_RS06340 PF09339 IclR helix-turn-helix domain SH08_RS06345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH08_RS06345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH08_RS06345 PF00205 Thiamine pyrophosphate enzyme, central domain SH08_RS06350 PF01261 Xylose isomerase-like TIM barrel SH08_RS06355 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH08_RS06355 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH08_RS06360 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin SH08_RS06365 PF01979 Amidohydrolase family SH08_RS06370 PF00860 Permease family SH08_RS06375 PF02595 Glycerate kinase family SH08_RS06380 PF05899 Protein of unknown function (DUF861) SH08_RS06380 PF07883 Cupin domain SH08_RS06385 PF01546 Peptidase family M20/M25/M40 SH08_RS06390 PF02615 Malate/L-lactate dehydrogenase SH08_RS06395 PF00549 CoA-ligase SH08_RS06395 PF02629 CoA binding domain SH08_RS06400 PF06545 Protein of unknown function (DUF1116) SH08_RS06405 PF11392 Protein of unknown function (DUF2877) SH08_RS06410 PF00696 Amino acid kinase family SH08_RS06415 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain SH08_RS06415 PF02222 ATP-grasp domain SH08_RS06420 PF00731 AIR carboxylase SH08_RS06425 PF12850 Calcineurin-like phosphoesterase superfamily domain SH08_RS06430 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH08_RS06435 PF01406 tRNA synthetases class I (C) catalytic domain SH08_RS06435 PF09190 DALR domain SH08_RS06440 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH08_RS06450 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain SH08_RS06450 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SH08_RS06455 PF00419 Fimbrial protein SH08_RS06460 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS06460 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS06465 PF00577 Outer membrane usher protein SH08_RS06465 PF13954 PapC N-terminal domain SH08_RS06465 PF13953 PapC C-terminal domain SH08_RS06470 PF00419 Fimbrial protein SH08_RS06475 PF00419 Fimbrial protein SH08_RS06480 PF00196 Bacterial regulatory proteins, luxR family SH08_RS06480 PF00072 Response regulator receiver domain SH08_RS06490 PF00589 Phage integrase family SH08_RS06500 PF06992 Replication protein P SH08_RS06510 PF01527 Transposase SH08_RS06515 PF00665 Integrase core domain SH08_RS06515 PF13276 HTH-like domain SH08_RS06515 PF13333 Integrase core domain SH08_RS06525 PF00893 Small Multidrug Resistance protein SH08_RS06535 PF00239 Resolvase, N terminal domain SH08_RS06535 PF13408 Recombinase zinc beta ribbon domain SH08_RS06535 PF07508 Recombinase SH08_RS06540 PF01161 Phosphatidylethanolamine-binding protein SH08_RS06545 PF12833 Helix-turn-helix domain SH08_RS06560 PF07102 Protein of unknown function (DUF1364) SH08_RS06565 PF05866 Endodeoxyribonuclease RusA SH08_RS06575 PF06530 Phage antitermination protein Q SH08_RS06585 PF05598 Transposase domain (DUF772) SH08_RS06585 PF01609 Transposase DDE domain SH08_RS06590 PF07166 Protein of unknown function (DUF1398) SH08_RS06600 PF13132 Domain of unknown function (DUF3950) SH08_RS06615 PF03400 IS1 transposase SH08_RS06620 PF07471 Phage DNA packaging protein Nu1 SH08_RS06625 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH08_RS06630 PF08242 Methyltransferase domain SH08_RS06640 PF12833 Helix-turn-helix domain SH08_RS06645 PF01278 Omptin family SH08_RS06655 PF12833 Helix-turn-helix domain SH08_RS06660 PF14488 Domain of unknown function (DUF4434) SH08_RS06665 PF13283 Bacteriophage N adsorption protein A C-term SH08_RS06670 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain SH08_RS06670 PF13632 Glycosyl transferase family group 2 SH08_RS06675 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS06675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS06675 PF00672 HAMP domain SH08_RS06680 PF00072 Response regulator receiver domain SH08_RS06680 PF00486 Transcriptional regulatory protein, C terminal SH08_RS06685 PF02321 Outer membrane efflux protein SH08_RS06690 PF11604 Copper binding periplasmic protein CusF SH08_RS06695 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS06695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS06700 PF00873 AcrB/AcrD/AcrF family SH08_RS06705 PF00324 Amino acid permease SH08_RS06710 PF00924 Mechanosensitive ion channel SH08_RS06715 PF00881 Nitroreductase family SH08_RS06720 PF04237 YjbR SH08_RS06725 PF06643 Protein of unknown function (DUF1158) SH08_RS06730 PF04107 Glutamate-cysteine ligase family 2(GCS2) SH08_RS06740 PF01848 Hok/gef family SH08_RS06745 PF01609 Transposase DDE domain SH08_RS06750 PF01648 4'-phosphopantetheinyl transferase superfamily SH08_RS06750 PF17837 4'-phosphopantetheinyl transferase N-terminal domain SH08_RS06755 PF07715 TonB-dependent Receptor Plug Domain SH08_RS06755 PF00593 TonB dependent receptor SH08_RS06760 PF11806 Domain of unknown function (DUF3327) SH08_RS06760 PF00756 Putative esterase SH08_RS06765 PF03621 MbtH-like protein SH08_RS06770 PF00668 Condensation domain SH08_RS06770 PF00975 Thioesterase domain SH08_RS06770 PF13193 AMP-binding enzyme C-terminal domain SH08_RS06770 PF00501 AMP-binding enzyme SH08_RS06770 PF00550 Phosphopantetheine attachment site SH08_RS06775 PF02706 Chain length determinant protein SH08_RS06780 PF00005 ABC transporter SH08_RS06785 PF01032 FecCD transport family SH08_RS06795 PF05977 Transmembrane secretion effector SH08_RS06800 PF01497 Periplasmic binding protein SH08_RS06805 PF00425 chorismate binding enzyme SH08_RS06810 PF13193 AMP-binding enzyme C-terminal domain SH08_RS06810 PF00501 AMP-binding enzyme SH08_RS06815 PF00550 Phosphopantetheine attachment site SH08_RS06815 PF00857 Isochorismatase family SH08_RS06825 PF03061 Thioesterase superfamily SH08_RS06830 PF13722 5TM C-terminal transporter carbon starvation CstA SH08_RS06830 PF02554 Carbon starvation protein CstA SH08_RS06835 PF04328 Selenoprotein, putative SH08_RS06840 PF00465 Iron-containing alcohol dehydrogenase SH08_RS06845 PF00155 Aminotransferase class I and II SH08_RS06850 PF02195 ParB-like nuclease domain SH08_RS06855 PF01507 Phosphoadenosine phosphosulfate reductase family SH08_RS06855 PF11922 Domain of unknown function (DUF3440) SH08_RS06860 PF03466 LysR substrate binding domain SH08_RS06860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS06865 PF13098 Thioredoxin-like domain SH08_RS06870 PF00578 AhpC/TSA family SH08_RS06870 PF10417 C-terminal domain of 1-Cys peroxiredoxin SH08_RS06875 PF13192 Thioredoxin domain SH08_RS06875 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS06880 PF00582 Universal stress protein family SH08_RS06885 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS06885 PF13823 Alcohol dehydrogenase GroES-associated SH08_RS06885 PF00107 Zinc-binding dehydrogenase SH08_RS06895 PF01272 Transcription elongation factor, GreA/GreB, C-term SH08_RS06895 PF14760 Rnk N-terminus SH08_RS06900 PF00445 Ribonuclease T2 family SH08_RS06905 PF00939 Sodium:sulfate symporter transmembrane region SH08_RS06910 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase SH08_RS06915 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase SH08_RS06920 PF04223 Citrate lyase, alpha subunit (CitF) SH08_RS06925 PF03328 HpcH/HpaI aldolase/citrate lyase family SH08_RS06930 PF06857 Malonate decarboxylase delta subunit (MdcD) SH08_RS06935 PF08218 Citrate lyase ligase C-terminal domain SH08_RS06940 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain SH08_RS06940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS06940 PF00989 PAS fold SH08_RS06940 PF17203 Single cache domain 3 SH08_RS06945 PF12431 Transcriptional regulator SH08_RS06945 PF00072 Response regulator receiver domain SH08_RS06950 PF03606 C4-dicarboxylate anaerobic carrier SH08_RS06955 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP SH08_RS06960 PF00313 'Cold-shock' DNA-binding domain SH08_RS06965 PF02537 CrcB-like protein, Camphor Resistance (CrcB) SH08_RS06975 PF02416 mttA/Hcf106 family SH08_RS06980 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family SH08_RS06980 PF04055 Radical SAM superfamily SH08_RS06985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS06985 PF03466 LysR substrate binding domain SH08_RS06995 PF03099 Biotin/lipoate A/B protein ligase family SH08_RS07000 PF04359 Protein of unknown function (DUF493) SH08_RS07005 PF07943 Penicillin-binding protein 5, C-terminal domain SH08_RS07005 PF00768 D-alanyl-D-alanine carboxypeptidase SH08_RS07010 PF05036 Sporulation related domain SH08_RS07010 PF03330 Lytic transglycolase SH08_RS07015 PF01098 Cell cycle protein SH08_RS07020 PF03717 Penicillin-binding Protein dimerisation domain SH08_RS07020 PF00905 Penicillin binding protein transpeptidase domain SH08_RS07025 PF02590 Predicted SPOUT methyltransferase SH08_RS07035 PF00300 Histidine phosphatase superfamily (branch 1) SH08_RS07040 PF01467 Cytidylyltransferase-like SH08_RS07045 PF14840 Processivity clamp loader gamma complex DNA pol III C-term SH08_RS07045 PF06144 DNA polymerase III, delta subunit SH08_RS07050 PF04390 Lipopolysaccharide-assembly SH08_RS07055 PF00133 tRNA synthetases class I (I, L, M and V) SH08_RS07055 PF13603 Leucyl-tRNA synthetase, Domain 2 SH08_RS07055 PF08264 Anticodon-binding domain of tRNA SH08_RS07060 PF07295 Zinc-ribbon containing domain SH08_RS07065 PF08238 Sel1 repeat SH08_RS07070 PF06889 Protein of unknown function (DUF1266) SH08_RS07080 PF08238 Sel1 repeat SH08_RS07085 PF06889 Protein of unknown function (DUF1266) SH08_RS07095 PF00012 Hsp70 protein SH08_RS07100 PF01156 Inosine-uridine preferring nucleoside hydrolase SH08_RS07105 PF00005 ABC transporter SH08_RS07110 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS07115 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS07120 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS07125 PF05598 Transposase domain (DUF772) SH08_RS07125 PF01609 Transposase DDE domain SH08_RS07130 PF00795 Carbon-nitrogen hydrolase SH08_RS07135 PF00571 CBS domain SH08_RS07135 PF03471 Transporter associated domain SH08_RS07140 PF02130 Uncharacterized protein family UPF0054 SH08_RS07145 PF02562 PhoH-like protein SH08_RS07150 PF01938 TRAM domain SH08_RS07150 PF04055 Radical SAM superfamily SH08_RS07150 PF00919 Uncharacterized protein family UPF0004 SH08_RS07155 PF01494 FAD binding domain SH08_RS07195 PF00733 Asparagine synthase SH08_RS07195 PF13537 Glutamine amidotransferase domain SH08_RS07200 PF13344 Haloacid dehalogenase-like hydrolase SH08_RS07205 PF00480 ROK family SH08_RS07205 PF01047 MarR family SH08_RS07210 PF01979 Amidohydrolase family SH08_RS07215 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH08_RS07220 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH08_RS07220 PF02378 Phosphotransferase system, EIIC SH08_RS07220 PF00367 phosphotransferase system, EIIB SH08_RS07225 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain SH08_RS07225 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH08_RS07230 PF03573 outer membrane porin, OprD family SH08_RS07235 PF13982 YbfN-like lipoprotein SH08_RS07240 PF01475 Ferric uptake regulator family SH08_RS07255 PF00258 Flavodoxin SH08_RS07260 PF01402 Ribbon-helix-helix protein, copG family SH08_RS07265 PF12697 Alpha/beta hydrolase family SH08_RS07270 PF17206 SeqA protein N-terminal domain SH08_RS07270 PF03925 SeqA protein C-terminal domain SH08_RS07275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH08_RS07275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH08_RS07275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH08_RS07275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH08_RS07290 PF03400 IS1 transposase SH08_RS07300 PF13520 Amino acid permease SH08_RS07305 PF01276 Orn/Lys/Arg decarboxylase, major domain SH08_RS07305 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH08_RS07305 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH08_RS07315 PF00486 Transcriptional regulatory protein, C terminal SH08_RS07315 PF00072 Response regulator receiver domain SH08_RS07320 PF02702 Osmosensitive K+ channel His kinase sensor domain SH08_RS07320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS07320 PF13492 GAF domain SH08_RS07320 PF13493 Domain of unknown function (DUF4118) SH08_RS07320 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS07325 PF02669 K+-transporting ATPase, c chain SH08_RS07335 PF03814 Potassium-transporting ATPase A subunit SH08_RS07340 PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) SH08_RS07345 PF10725 Protein of unknown function (DUF2517) SH08_RS07350 PF05593 RHS Repeat SH08_RS07350 PF03527 RHS protein SH08_RS07360 PF05593 RHS Repeat SH08_RS07360 PF03527 RHS protein SH08_RS07370 PF13808 DDE_Tnp_1-associated SH08_RS07375 PF01609 Transposase DDE domain SH08_RS07375 PF13808 DDE_Tnp_1-associated SH08_RS07380 PF01609 Transposase DDE domain SH08_RS07380 PF13808 DDE_Tnp_1-associated SH08_RS07385 PF08349 Protein of unknown function (DUF1722) SH08_RS07390 PF03441 FAD binding domain of DNA photolyase SH08_RS07390 PF00875 DNA photolyase SH08_RS07395 PF00854 POT family SH08_RS07400 PF01784 NIF3 (NGG1p interacting factor 3) SH08_RS07405 PF02682 Carboxyltransferase domain, subdomain C and D SH08_RS07410 PF02626 Carboxyltransferase domain, subdomain A and B SH08_RS07415 PF03746 LamB/YcsF family SH08_RS07420 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH08_RS07420 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH08_RS07420 PF06827 Zinc finger found in FPG and IleRS SH08_RS07425 PF05145 Transition state regulatory protein AbrB SH08_RS07430 PF00419 Fimbrial protein SH08_RS07435 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS07435 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS07440 PF13953 PapC C-terminal domain SH08_RS07440 PF13954 PapC N-terminal domain SH08_RS07440 PF00577 Outer membrane usher protein SH08_RS07445 PF00419 Fimbrial protein SH08_RS07450 PF00285 Citrate synthase, C-terminal domain SH08_RS07460 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH08_RS07465 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit SH08_RS07470 PF02910 Fumarate reductase flavoprotein C-term SH08_RS07470 PF00890 FAD binding domain SH08_RS07475 PF13085 2Fe-2S iron-sulfur cluster binding domain SH08_RS07485 PF16870 2-oxoglutarate dehydrogenase C-terminal SH08_RS07485 PF02779 Transketolase, pyrimidine binding domain SH08_RS07485 PF16078 2-oxoglutarate dehydrogenase N-terminus SH08_RS07485 PF00676 Dehydrogenase E1 component SH08_RS07490 PF00364 Biotin-requiring enzyme SH08_RS07490 PF02817 e3 binding domain SH08_RS07490 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) SH08_RS07495 PF00549 CoA-ligase SH08_RS07495 PF08442 ATP-grasp domain SH08_RS07500 PF02629 CoA binding domain SH08_RS07500 PF00549 CoA-ligase SH08_RS07505 PF07702 UTRA domain SH08_RS07505 PF00392 Bacterial regulatory proteins, gntR family SH08_RS07510 PF02378 Phosphotransferase system, EIIC SH08_RS07510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS07510 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS07515 PF07748 Glycosyl hydrolases family 38 C-terminal domain SH08_RS07515 PF01074 Glycosyl hydrolases family 38 N-terminal domain SH08_RS07515 PF09261 Alpha mannosidase middle domain SH08_RS07525 PF01654 Cytochrome bd terminal oxidase subunit I SH08_RS07530 PF02322 Cytochrome bd terminal oxidase subunit II SH08_RS07535 PF08173 Membrane bound YbgT-like protein SH08_RS07540 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) SH08_RS07545 PF03061 Thioesterase superfamily SH08_RS07550 PF01618 MotA/TolQ/ExbB proton channel family SH08_RS07555 PF02472 Biopolymer transport protein ExbD/TolR SH08_RS07560 PF06519 TolA C-terminal SH08_RS07565 PF07676 WD40-like Beta Propeller Repeat SH08_RS07565 PF04052 TolB amino-terminal domain SH08_RS07570 PF00691 OmpA family SH08_RS07575 PF16331 TolA binding protein trimerisation SH08_RS07575 PF13174 Tetratricopeptide repeat SH08_RS07615 PF02445 Quinolinate synthetase A protein SH08_RS07620 PF04973 Nicotinamide mononucleotide transporter SH08_RS07625 PF01545 Cation efflux family SH08_RS07630 PF13985 YbgS-like protein SH08_RS07640 PF00793 DAHP synthetase I family SH08_RS07645 PF00300 Histidine phosphatase superfamily (branch 1) SH08_RS07650 PF01263 Aldose 1-epimerase SH08_RS07655 PF08544 GHMP kinases C terminal SH08_RS07655 PF10509 Galactokinase galactose-binding signature SH08_RS07655 PF00288 GHMP kinases N terminal domain SH08_RS07660 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain SH08_RS07660 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain SH08_RS07665 PF16363 GDP-mannose 4,6 dehydratase SH08_RS07670 PF00005 ABC transporter SH08_RS07675 PF03459 TOBE domain SH08_RS07675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS07680 PF10766 Multidrug efflux pump-associated protein AcrZ SH08_RS07690 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS07695 PF00005 ABC transporter SH08_RS07695 PF03459 TOBE domain SH08_RS07705 PF10282 Lactonase, 7-bladed beta-propeller SH08_RS07710 PF03466 LysR substrate binding domain SH08_RS07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS07715 PF04303 PrpF protein SH08_RS07720 PF00939 Sodium:sulfate symporter transmembrane region SH08_RS07725 PF00330 Aconitase family (aconitate hydratase) SH08_RS07725 PF00694 Aconitase C-terminal domain SH08_RS07730 PF01095 Pectinesterase SH08_RS07735 PF01161 Phosphatidylethanolamine-binding protein SH08_RS07740 PF00202 Aminotransferase class-III SH08_RS07745 PF04055 Radical SAM superfamily SH08_RS07745 PF06968 Biotin and Thiamin Synthesis associated domain SH08_RS07750 PF00155 Aminotransferase class I and II SH08_RS07755 PF08241 Methyltransferase domain SH08_RS07765 PF02151 UvrB/uvrC motif SH08_RS07765 PF00271 Helicase conserved C-terminal domain SH08_RS07765 PF17757 UvrB interaction domain SH08_RS07765 PF04851 Type III restriction enzyme, res subunit SH08_RS07765 PF12344 Ultra-violet resistance protein B SH08_RS07770 PF01933 Uncharacterised protein family UPF0052 SH08_RS07780 PF04055 Radical SAM superfamily SH08_RS07780 PF06463 Molybdenum Cofactor Synthesis C SH08_RS07785 PF00994 Probable molybdopterin binding domain SH08_RS07790 PF01967 MoaC family SH08_RS07795 PF02597 ThiS family SH08_RS07800 PF02391 MoaE protein SH08_RS07805 PF01027 Inhibitor of apoptosis-promoting Bax1 SH08_RS07810 PF01027 Inhibitor of apoptosis-promoting Bax1 SH08_RS07815 PF03706 Lysylphosphatidylglycerol synthase TM region SH08_RS07820 PF13091 PLD-like domain SH08_RS07825 PF03372 Endonuclease/Exonuclease/phosphatase family SH08_RS07830 PF11076 Putative inner membrane protein YbhQ SH08_RS07845 PF00005 ABC transporter SH08_RS07850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS07855 PF00440 Bacterial regulatory proteins, tetR family SH08_RS07855 PF09209 Tetracyclin repressor-like, C-terminal domain SH08_RS07860 PF00270 DEAD/DEAH box helicase SH08_RS07860 PF00271 Helicase conserved C-terminal domain SH08_RS07865 PF08719 Domain of unknown function (DUF1768) SH08_RS07870 PF06733 DEAD_2 SH08_RS07870 PF13307 Helicase C-terminal domain SH08_RS07870 PF00270 DEAD/DEAH box helicase SH08_RS07875 PF02885 Glycosyl transferase family, helical bundle domain SH08_RS07880 PF02615 Malate/L-lactate dehydrogenase SH08_RS07885 PF07338 Protein of unknown function (DUF1471) SH08_RS07890 PF01258 Prokaryotic dksA/traR C4-type zinc finger SH08_RS07895 PF18331 PKHD-type hydroxylase C-terminal domain SH08_RS07895 PF13640 2OG-Fe(II) oxygenase superfamily SH08_RS07900 PF00593 TonB dependent receptor SH08_RS07900 PF07715 TonB-dependent Receptor Plug Domain SH08_RS07905 PF07338 Protein of unknown function (DUF1471) SH08_RS07910 PF05971 RNA methyltransferase SH08_RS07915 PF00924 Mechanosensitive ion channel SH08_RS07920 PF00005 ABC transporter SH08_RS07925 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS07930 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS07940 PF00210 Ferritin-like domain SH08_RS07950 PF13505 Outer membrane protein beta-barrel domain SH08_RS07955 PF00884 Sulfatase SH08_RS07965 PF02742 Iron dependent repressor, metal binding and dimerisation domain SH08_RS07965 PF01325 Iron dependent repressor, N-terminal DNA binding domain SH08_RS07970 PF03600 Citrate transporter SH08_RS07975 PF03734 L,D-transpeptidase catalytic domain SH08_RS07975 PF17969 L,D-transpeptidase C-terminal domain SH08_RS07980 PF12848 ABC transporter SH08_RS07980 PF00005 ABC transporter SH08_RS07985 PF07350 Protein of unknown function (DUF1479) SH08_RS07995 PF02901 Pyruvate formate lyase-like SH08_RS07995 PF01228 Glycine radical SH08_RS08000 PF04055 Radical SAM superfamily SH08_RS08005 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH08_RS08010 PF00899 ThiF family SH08_RS08015 PF00994 Probable molybdopterin binding domain SH08_RS08015 PF03453 MoeA N-terminal region (domain I and II) SH08_RS08015 PF03454 MoeA C-terminal region (domain IV) SH08_RS08020 PF01112 Asparaginase SH08_RS08025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH08_RS08025 PF00005 ABC transporter SH08_RS08030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS08035 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS08040 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS08040 PF12911 N-terminal TM domain of oligopeptide transport permease C SH08_RS08050 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS08050 PF17156 Gammaproteobacterial periplasmic sensor domain SH08_RS08055 PF00919 Uncharacterized protein family UPF0004 SH08_RS08055 PF04055 Radical SAM superfamily SH08_RS08055 PF18693 TRAM domain SH08_RS08060 PF10799 Biofilm formation protein (YliH/bssR) SH08_RS08065 PF07995 Glucose / Sorbosone dehydrogenase SH08_RS08070 PF13417 Glutathione S-transferase, N-terminal domain SH08_RS08070 PF00043 Glutathione S-transferase, C-terminal domain SH08_RS08075 PF00768 D-alanyl-D-alanine carboxypeptidase SH08_RS08075 PF07943 Penicillin-binding protein 5, C-terminal domain SH08_RS08080 PF00455 DeoR C terminal sensor domain SH08_RS08080 PF08220 DeoR-like helix-turn-helix domain SH08_RS08085 PF01569 PAP2 superfamily SH08_RS08090 PF07690 Major Facilitator Superfamily SH08_RS08105 PF07690 Major Facilitator Superfamily SH08_RS08110 PF00440 Bacterial regulatory proteins, tetR family SH08_RS08115 PF02080 TrkA-C domain SH08_RS08115 PF06826 Predicted Permease Membrane Region SH08_RS08120 PF11045 Putative inner membrane protein of Enterobacteriaceae SH08_RS08125 PF00462 Glutaredoxin SH08_RS08130 PF07214 Protein of unknown function (DUF1418) SH08_RS08135 PF00881 Nitroreductase family SH08_RS08140 PF18030 RimK PreATP-grasp domain SH08_RS08140 PF08443 RimK-like ATP-grasp domain SH08_RS08145 PF10722 Putative bacterial sensory transduction regulator SH08_RS08155 PF13416 Bacterial extracellular solute-binding protein SH08_RS08160 PF00005 ABC transporter SH08_RS08160 PF08402 TOBE domain SH08_RS08165 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS08170 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS08175 PF10767 Protein of unknown function (DUF2593) SH08_RS08180 PF05958 tRNA (Uracil-5-)-methyltransferase SH08_RS08185 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS08190 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS08195 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS08200 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS08205 PF00005 ABC transporter SH08_RS08210 PF12883 Protein of unknown function (DUF3828) SH08_RS08215 PF01906 Putative heavy-metal-binding SH08_RS08220 PF01510 N-acetylmuramoyl-L-alanine amidase SH08_RS08225 PF01370 NAD dependent epimerase/dehydratase family SH08_RS08230 PF13460 NAD(P)H-binding SH08_RS08230 PF11066 Protein of unknown function (DUF2867) SH08_RS08235 PF01212 Beta-eliminating lyase SH08_RS08240 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH08_RS08240 PF00205 Thiamine pyrophosphate enzyme, central domain SH08_RS08240 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH08_RS08245 PF00970 Oxidoreductase FAD-binding domain SH08_RS08245 PF00175 Oxidoreductase NAD-binding domain SH08_RS08245 PF00111 2Fe-2S iron-sulfur cluster binding domain SH08_RS08250 PF03063 Prismane/CO dehydrogenase family SH08_RS08255 PF03956 Lysine exporter LysO SH08_RS08260 PF00230 Major intrinsic protein SH08_RS08270 PF11398 Protein of unknown function (DUF2813) SH08_RS08275 PF04393 Protein of unknown function (DUF535) SH08_RS08280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS08285 PF12704 MacB-like periplasmic core domain SH08_RS08285 PF00005 ABC transporter SH08_RS08285 PF02687 FtsX-like permease family SH08_RS08290 PF00313 'Cold-shock' DNA-binding domain SH08_RS08295 PF02617 ATP-dependent Clp protease adaptor protein ClpS SH08_RS08300 PF02861 Clp amino terminal domain, pathogenicity island component SH08_RS08300 PF17871 AAA lid domain SH08_RS08300 PF07724 AAA domain (Cdc48 subfamily) SH08_RS08300 PF00004 ATPase family associated with various cellular activities (AAA) SH08_RS08300 PF10431 C-terminal, D2-small domain, of ClpB protein SH08_RS08310 PF01176 Translation initiation factor 1A / IF-1 SH08_RS08315 PF03588 Leucyl/phenylalanyl-tRNA protein transferase SH08_RS08320 PF00005 ABC transporter SH08_RS08320 PF00664 ABC transporter transmembrane region SH08_RS08325 PF00664 ABC transporter transmembrane region SH08_RS08325 PF00005 ABC transporter SH08_RS08330 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS08335 PF01037 Lrp/AsnC ligand binding domain SH08_RS08340 PF13491 4TM region of DNA translocase FtsK/SpoIIIE SH08_RS08340 PF09397 Ftsk gamma domain SH08_RS08340 PF01580 FtsK/SpoIIIE family SH08_RS08340 PF17854 FtsK alpha domain SH08_RS08345 PF03548 Outer membrane lipoprotein carrier protein LolA SH08_RS08350 PF12002 MgsA AAA+ ATPase C terminal SH08_RS08350 PF16193 AAA C-terminal domain SH08_RS08350 PF00004 ATPase family associated with various cellular activities (AAA) SH08_RS08355 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH08_RS08355 PF02403 Seryl-tRNA synthetase N-terminal domain SH08_RS08360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS08360 PF00384 Molybdopterin oxidoreductase SH08_RS08360 PF01568 Molydopterin dinucleotide binding domain SH08_RS08365 PF12800 4Fe-4S binding domain SH08_RS08365 PF13247 4Fe-4S dicluster domain SH08_RS08370 PF04976 DMSO reductase anchor subunit (DmsC) SH08_RS08375 PF00857 Isochorismatase family SH08_RS08380 PF07690 Major Facilitator Superfamily SH08_RS08385 PF13520 Amino acid permease SH08_RS08390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS08390 PF03466 LysR substrate binding domain SH08_RS08395 PF02525 Flavodoxin-like fold SH08_RS08400 PF04055 Radical SAM superfamily SH08_RS08405 PF01228 Glycine radical SH08_RS08405 PF02901 Pyruvate formate lyase-like SH08_RS08410 PF01226 Formate/nitrite transporter SH08_RS08415 PF18381 YcaO cyclodehydratase C-terminal domain SH08_RS08415 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding SH08_RS08420 PF04239 Protein of unknown function (DUF421) SH08_RS08425 PF00266 Aminotransferase class-V SH08_RS08430 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH08_RS08435 PF01435 Peptidase family M48 SH08_RS08440 PF02224 Cytidylate kinase SH08_RS08445 PF00575 S1 RNA binding domain SH08_RS08450 PF00216 Bacterial DNA-binding protein SH08_RS08455 PF03772 Competence protein SH08_RS08455 PF00753 Metallo-beta-lactamase superfamily SH08_RS08460 PF00005 ABC transporter SH08_RS08460 PF00664 ABC transporter transmembrane region SH08_RS08465 PF02606 Tetraacyldisaccharide-1-P 4'-kinase SH08_RS08470 PF06224 Winged helix DNA-binding domain SH08_RS08475 PF03966 Trm112p-like protein SH08_RS08480 PF02348 Cytidylyltransferase SH08_RS08485 PF01636 Phosphotransferase enzyme family SH08_RS08490 PF02698 DUF218 domain SH08_RS08495 PF13847 Methyltransferase domain SH08_RS08500 PF17193 MukF C-terminal domain SH08_RS08500 PF17192 MukF middle domain SH08_RS08500 PF03882 MukF winged-helix domain SH08_RS08505 PF04288 MukE-like family SH08_RS08510 PF04310 MukB N-terminal SH08_RS08510 PF16330 MukB hinge domain SH08_RS08515 PF03734 L,D-transpeptidase catalytic domain SH08_RS08515 PF01471 Putative peptidoglycan binding domain SH08_RS08520 PF05951 Bacterial protein of unknown function (DUF882) SH08_RS08525 PF00753 Metallo-beta-lactamase superfamily SH08_RS08530 PF00155 Aminotransferase class I and II SH08_RS08540 PF00267 Gram-negative porin SH08_RS08545 PF01336 OB-fold nucleic acid binding domain SH08_RS08545 PF00152 tRNA synthetases class II (D, K and N) SH08_RS08550 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain SH08_RS08550 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family SH08_RS08555 PF11940 Domain of unknown function (DUF3458) Ig-like fold SH08_RS08555 PF17432 Domain of unknown function (DUF3458_C) ARM repeats SH08_RS08555 PF01433 Peptidase family M1 domain SH08_RS08560 PF00005 ABC transporter SH08_RS08565 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS08570 PF00296 Luciferase-like monooxygenase SH08_RS08575 PF09084 NMT1/THI5 like SH08_RS08580 PF03358 NADPH-dependent FMN reductase SH08_RS08585 PF00419 Fimbrial protein SH08_RS08590 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS08590 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS08595 PF13953 PapC C-terminal domain SH08_RS08595 PF13954 PapC N-terminal domain SH08_RS08595 PF00577 Outer membrane usher protein SH08_RS08600 PF00419 Fimbrial protein SH08_RS08605 PF00419 Fimbrial protein SH08_RS08610 PF00419 Fimbrial protein SH08_RS08615 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS08615 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS08620 PF01180 Dihydroorotate dehydrogenase SH08_RS08625 PF07126 Cell-division protein ZapC SH08_RS08630 PF03476 MOSC N-terminal beta barrel domain SH08_RS08630 PF03473 MOSC domain SH08_RS08630 PF00111 2Fe-2S iron-sulfur cluster binding domain SH08_RS08635 PF01170 Putative RNA methylase family UPF0020 SH08_RS08635 PF02926 THUMP domain SH08_RS08635 PF10672 S-adenosylmethionine-dependent methyltransferase SH08_RS08640 PF12848 ABC transporter SH08_RS08640 PF16326 ABC transporter C-terminal domain SH08_RS08640 PF00005 ABC transporter SH08_RS08645 PF04403 Paraquat-inducible protein A SH08_RS08650 PF02470 MlaD protein SH08_RS08655 PF03886 ABC-type transport auxiliary lipoprotein component SH08_RS08660 PF04957 Ribosome modulation factor SH08_RS08665 PF07977 FabA-like domain SH08_RS08670 PF13654 AAA domain SH08_RS08670 PF05362 Lon protease (S16) C-terminal proteolytic domain SH08_RS08675 PF06303 MatP N-terminal domain SH08_RS08675 PF17414 MatP C-terminal ribbon-helix-helix domain SH08_RS08680 PF01389 OmpA-like transmembrane domain SH08_RS08680 PF00691 OmpA family SH08_RS08690 PF03846 Cell division inhibitor SulA SH08_RS08695 PF04993 TfoX N-terminal domain SH08_RS08695 PF04994 TfoX C-terminal domain SH08_RS08700 PF12805 FUSC-like inner membrane protein yccS SH08_RS08705 PF03733 Inner membrane component domain SH08_RS08710 PF13361 UvrD-like helicase C-terminal domain SH08_RS08710 PF12462 DNA helicase IV / RNA helicase N terminal SH08_RS08710 PF00580 UvrD/REP helicase N-terminal domain SH08_RS08715 PF02142 MGS-like domain SH08_RS08720 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) SH08_RS08730 PF13380 CoA binding domain SH08_RS08735 PF08755 Hemimethylated DNA-binding protein YccV like SH08_RS08740 PF10672 S-adenosylmethionine-dependent methyltransferase SH08_RS08740 PF17785 PUA-like domain SH08_RS08745 PF00708 Acylphosphatase SH08_RS08750 PF04358 DsrC like protein SH08_RS08755 PF01027 Inhibitor of apoptosis-promoting Bax1 SH08_RS08765 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH08_RS08765 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH08_RS08770 PF00374 Nickel-dependent hydrogenase SH08_RS08775 PF01292 Prokaryotic cytochrome b561 SH08_RS08780 PF01750 Hydrogenase maturation protease SH08_RS08785 PF07449 Hydrogenase-1 expression protein HyaE SH08_RS08790 PF04809 HupH hydrogenase expression protein, C-terminal conserved region SH08_RS08795 PF01654 Cytochrome bd terminal oxidase subunit I SH08_RS08800 PF02322 Cytochrome bd terminal oxidase subunit II SH08_RS08805 PF08173 Membrane bound YbgT-like protein SH08_RS08810 PF00328 Histidine phosphatase superfamily (branch 2) SH08_RS08815 PF13614 AAA domain SH08_RS08815 PF13807 G-rich domain on putative tyrosine kinase SH08_RS08815 PF02706 Chain length determinant protein SH08_RS08820 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH08_RS08825 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH08_RS08825 PF10531 SLBB domain SH08_RS08825 PF02563 Polysaccharide biosynthesis/export protein SH08_RS08830 PF06082 Exopolysaccharide biosynthesis protein YbjH SH08_RS08835 PF06251 Capsule biosynthesis GfcC SH08_RS08840 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF SH08_RS08855 PF03400 IS1 transposase SH08_RS08860 PF00313 'Cold-shock' DNA-binding domain SH08_RS08865 PF00313 'Cold-shock' DNA-binding domain SH08_RS08870 PF15939 Putative antitoxin of bacterial toxin-antitoxin system SH08_RS08875 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH08_RS08880 PF12801 4Fe-4S binding domain SH08_RS08885 PF00072 Response regulator receiver domain SH08_RS08885 PF01627 Hpt domain SH08_RS08885 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS08885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS08885 PF00672 HAMP domain SH08_RS08890 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH08_RS08895 PF00486 Transcriptional regulatory protein, C terminal SH08_RS08895 PF00072 Response regulator receiver domain SH08_RS08900 PF03264 NapC/NirT cytochrome c family, N-terminal region SH08_RS08905 PF01568 Molydopterin dinucleotide binding domain SH08_RS08905 PF18364 Molybdopterin oxidoreductase N-terminal domain SH08_RS08905 PF00384 Molybdopterin oxidoreductase SH08_RS08910 PF02613 Nitrate reductase delta subunit SH08_RS08920 PF00226 DnaJ domain SH08_RS08920 PF01556 DnaJ C terminal domain SH08_RS08930 PF00328 Histidine phosphatase superfamily (branch 2) SH08_RS08935 PF13993 YccJ-like protein SH08_RS08940 PF03358 NADPH-dependent FMN reductase SH08_RS08950 PF10685 Stress-induced bacterial acidophilic repeat motif SH08_RS08955 PF00860 Permease family SH08_RS08960 PF01613 Flavin reductase like domain SH08_RS08965 PF00881 Nitroreductase family SH08_RS08970 PF12697 Alpha/beta hydrolase family SH08_RS08975 PF01042 Endoribonuclease L-PSP SH08_RS08980 PF00857 Isochorismatase family SH08_RS08985 PF00296 Luciferase-like monooxygenase SH08_RS08990 PF08362 YcdC-like protein, C-terminal region SH08_RS08990 PF00440 Bacterial regulatory proteins, tetR family SH08_RS08995 PF14850 DNA-binding domain of Proline dehydrogenase SH08_RS08995 PF18327 Proline utilization A proline dehydrogenase N-terminal domain SH08_RS08995 PF01619 Proline dehydrogenase SH08_RS08995 PF00171 Aldehyde dehydrogenase family SH08_RS09005 PF00474 Sodium:solute symporter family SH08_RS09020 PF13473 Cupredoxin-like domain SH08_RS09020 PF09375 Imelysin SH08_RS09025 PF04261 Dyp-type peroxidase family SH08_RS09035 PF02562 PhoH-like protein SH08_RS09040 PF13994 PgaD-like protein SH08_RS09045 PF00535 Glycosyl transferase family 2 SH08_RS09050 PF01522 Polysaccharide deacetylase SH08_RS09050 PF14883 Hypothetical glycosyl hydrolase family 13 SH08_RS09060 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS09060 PF17158 Membrane-associated sensor, integral membrane domain SH08_RS09065 PF13276 HTH-like domain SH08_RS09065 PF00665 Integrase core domain SH08_RS09065 PF13333 Integrase core domain SH08_RS09070 PF01527 Transposase SH08_RS09100 PF02811 PHP domain SH08_RS09105 PF02613 Nitrate reductase delta subunit SH08_RS09110 PF06496 Protein of unknown function (DUF1097) SH08_RS09115 PF03783 Curli production assembly/transport component CsgG SH08_RS09120 PF10614 Type VIII secretion system (T8SS), CsgF protein SH08_RS09125 PF10627 Curli assembly protein CsgE SH08_RS09130 PF00196 Bacterial regulatory proteins, luxR family SH08_RS09140 PF07012 Curlin associated repeat SH08_RS09145 PF07012 Curlin associated repeat SH08_RS09150 PF10610 Thin aggregative fimbriae synthesis protein SH08_RS09160 PF01661 Macro domain SH08_RS09165 PF13091 PLD-like domain SH08_RS09170 PF01757 Acyltransferase family SH08_RS09185 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH08_RS09190 PF00535 Glycosyl transferase family 2 SH08_RS09195 PF07119 Protein of unknown function (DUF1375) SH08_RS09200 PF13984 MsyB protein SH08_RS09210 PF07690 Major Facilitator Superfamily SH08_RS09215 PF03279 Bacterial lipid A biosynthesis acyltransferase SH08_RS09220 PF00581 Rhodanese-like domain SH08_RS09220 PF17773 UPF0176 acylphosphatase like domain SH08_RS09220 PF12368 Rhodanase C-terminal SH08_RS09225 PF04264 YceI-like domain SH08_RS09230 PF01292 Prokaryotic cytochrome b561 SH08_RS09235 PF10968 Protein of unknown function (DUF2770) SH08_RS09240 PF01266 FAD dependent oxidoreductase SH08_RS09245 PF13991 BssS protein family SH08_RS09250 PF06183 DinI-like family SH08_RS09255 PF01979 Amidohydrolase family SH08_RS09260 PF07273 Protein of unknown function (DUF1439) SH08_RS09265 PF13417 Glutathione S-transferase, N-terminal domain SH08_RS09265 PF04399 Glutaredoxin 2, C terminal domain SH08_RS09270 PF07690 Major Facilitator Superfamily SH08_RS09275 PF13302 Acetyltransferase (GNAT) domain SH08_RS09280 PF04337 Protein of unknown function, DUF480 SH08_RS09285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH08_RS09290 PF03023 Lipid II flippase MurJ SH08_RS09295 PF05130 FlgN protein SH08_RS09300 PF04316 Anti-sigma-28 factor, FlgM SH08_RS09305 PF13144 Chaperone for flagella basal body P-ring formation SH08_RS09310 PF00460 Flagella basal body rod protein SH08_RS09315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH08_RS09315 PF00460 Flagella basal body rod protein SH08_RS09320 PF03963 Flagellar hook capping protein - N-terminal region SH08_RS09320 PF13860 FlgD Ig-like domain SH08_RS09320 PF13861 FlgD Tudor-like domain SH08_RS09325 PF00460 Flagella basal body rod protein SH08_RS09325 PF07559 Flagellar basal body protein FlaE SH08_RS09325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH08_RS09330 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH08_RS09330 PF00460 Flagella basal body rod protein SH08_RS09335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH08_RS09335 PF00460 Flagella basal body rod protein SH08_RS09340 PF02107 Flagellar L-ring protein SH08_RS09345 PF02119 Flagellar P-ring protein SH08_RS09350 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH08_RS09350 PF10135 Rod binding protein SH08_RS09355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal SH08_RS09355 PF00460 Flagella basal body rod protein SH08_RS09360 PF00669 Bacterial flagellin N-terminal helical region SH08_RS09365 PF00575 S1 RNA binding domain SH08_RS09365 PF12111 Polyribonucleotide phosphorylase C terminal SH08_RS09365 PF10150 Ribonuclease E/G family SH08_RS09375 PF01479 S4 domain SH08_RS09375 PF00849 RNA pseudouridylate synthase SH08_RS09380 PF02545 Maf-like protein SH08_RS09385 PF02620 Large ribosomal RNA subunit accumulation protein YceD SH08_RS09390 PF01783 Ribosomal L32p protein family SH08_RS09395 PF02504 Fatty acid synthesis protein SH08_RS09400 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III SH08_RS09400 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal SH08_RS09415 PF00550 Phosphopantetheine attachment site SH08_RS09420 PF02801 Beta-ketoacyl synthase, C-terminal domain SH08_RS09420 PF00109 Beta-ketoacyl synthase, N-terminal domain SH08_RS09425 PF01063 Amino-transferase class IV SH08_RS09430 PF02618 YceG-like family SH08_RS09435 PF02223 Thymidylate kinase SH08_RS09440 PF09115 DNA polymerase III, delta subunit, C terminal SH08_RS09445 PF01026 TatD related DNase SH08_RS09450 PF02378 Phosphotransferase system, EIIC SH08_RS09450 PF00367 phosphotransferase system, EIIB SH08_RS09455 PF00593 TonB dependent receptor SH08_RS09455 PF07715 TonB-dependent Receptor Plug Domain SH08_RS09460 PF01230 HIT domain SH08_RS09465 PF07233 Protein of unknown function (DUF1425) SH08_RS09470 PF13036 Peptidoglycan-synthase activator LpoB SH08_RS09475 PF01636 Phosphotransferase enzyme family SH08_RS09480 PF00933 Glycosyl hydrolase family 3 N terminal domain SH08_RS09485 PF05728 Uncharacterised protein family (UPF0227) SH08_RS09490 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS09495 PF05433 Glycine zipper 2TM domain SH08_RS09505 PF07338 Protein of unknown function (DUF1471) SH08_RS09510 PF01476 LysM domain SH08_RS09510 PF17969 L,D-transpeptidase C-terminal domain SH08_RS09510 PF03734 L,D-transpeptidase catalytic domain SH08_RS09515 PF00270 DEAD/DEAH box helicase SH08_RS09515 PF00271 Helicase conserved C-terminal domain SH08_RS09515 PF03461 TRCF domain SH08_RS09515 PF17757 UvrB interaction domain SH08_RS09515 PF02559 CarD-like/TRCF domain SH08_RS09520 PF01757 Acyltransferase family SH08_RS09525 PF12704 MacB-like periplasmic core domain SH08_RS09525 PF02687 FtsX-like permease family SH08_RS09530 PF00005 ABC transporter SH08_RS09535 PF02687 FtsX-like permease family SH08_RS09535 PF12704 MacB-like periplasmic core domain SH08_RS09540 PF00480 ROK family SH08_RS09545 PF02146 Sir2 family SH08_RS09550 PF04536 TPM domain SH08_RS09555 PF12158 Protein of unknown function (DUF3592) SH08_RS09560 PF13416 Bacterial extracellular solute-binding protein SH08_RS09565 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS09570 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS09575 PF00005 ABC transporter SH08_RS09575 PF08402 TOBE domain SH08_RS09585 PF07687 Peptidase dimerisation domain SH08_RS09585 PF01546 Peptidase family M20/M25/M40 SH08_RS09590 PF08007 Cupin superfamily protein SH08_RS09595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS09595 PF08918 PhoQ Sensor SH08_RS09600 PF00072 Response regulator receiver domain SH08_RS09600 PF00486 Transcriptional regulatory protein, C terminal SH08_RS09605 PF08328 Adenylosuccinate lyase C-terminal SH08_RS09605 PF00206 Lyase SH08_RS09610 PF04356 Protein of unknown function (DUF489) SH08_RS09620 PF00293 NUDIX domain SH08_RS09625 PF00849 RNA pseudouridylate synthase SH08_RS09630 PF00180 Isocitrate/isopropylmalate dehydrogenase SH08_RS09635 PF08242 Methyltransferase domain SH08_RS09645 PF10463 Peptidase U49 SH08_RS09650 PF00589 Phage integrase family SH08_RS09650 PF09003 Bacteriophage lambda integrase, Arm DNA-binding domain SH08_RS09660 PF00717 Peptidase S24-like SH08_RS09665 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SH08_RS09680 PF03354 Phage Terminase SH08_RS09690 PF04860 Phage portal protein SH08_RS09695 PF04865 Baseplate J-like protein SH08_RS09700 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) SH08_RS09710 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH08_RS09715 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH08_RS09725 PF02796 Helix-turn-helix domain of resolvase SH08_RS09725 PF00239 Resolvase, N terminal domain SH08_RS09730 PF01844 HNH endonuclease SH08_RS09745 PF07166 Protein of unknown function (DUF1398) SH08_RS09750 PF13411 MerR HTH family regulatory protein SH08_RS09755 PF00563 EAL domain SH08_RS09755 PF04940 Sensors of blue-light using FAD SH08_RS09760 PF10798 Biofilm development protein YmgB/AriR SH08_RS09770 PF10798 Biofilm development protein YmgB/AriR SH08_RS09780 PF00563 EAL domain SH08_RS09780 PF12792 CSS motif domain associated with EAL SH08_RS09805 PF16456 YmgD protein SH08_RS09810 PF13436 Glycine-zipper domain SH08_RS09825 PF03776 Septum formation topological specificity factor MinE SH08_RS09830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain SH08_RS09835 PF05209 Septum formation inhibitor MinC, N-terminal domain SH08_RS09835 PF03775 Septum formation inhibitor MinC, C-terminal domain SH08_RS09840 PF05666 Fels-1 Prophage Protein-like SH08_RS09845 PF04151 Bacterial pre-peptidase C-terminal domain SH08_RS09855 PF05166 YcgL domain SH08_RS09860 PF01557 Fumarylacetoacetate (FAA) hydrolase family SH08_RS09865 PF03692 Putative zinc- or iron-chelating domain SH08_RS09870 PF06109 Haemolysin E (HlyE) SH08_RS09875 PF00717 Peptidase S24-like SH08_RS09880 PF00817 impB/mucB/samB family SH08_RS09880 PF13438 Domain of unknown function (DUF4113) SH08_RS09880 PF11799 impB/mucB/samB family C-terminal domain SH08_RS09880 PF11798 IMS family HHH motif SH08_RS09885 PF02600 Disulfide bond formation protein DsbB SH08_RS09890 PF06450 Bacterial Na+/H+ antiporter B (NhaB) SH08_RS09895 PF07840 FadR C-terminal domain SH08_RS09895 PF00392 Bacterial regulatory proteins, gntR family SH08_RS09900 PF04293 SpoVR like protein SH08_RS09905 PF01266 FAD dependent oxidoreductase SH08_RS09910 PF01168 Alanine racemase, N-terminal domain SH08_RS09910 PF00842 Alanine racemase, C-terminal domain SH08_RS09915 PF03471 Transporter associated domain SH08_RS09915 PF00999 Sodium/hydrogen exchanger family SH08_RS09915 PF02080 TrkA-C domain SH08_RS09920 PF02016 LD-carboxypeptidase N-terminal domain SH08_RS09920 PF17676 LD-carboxypeptidase C-terminal domain SH08_RS09925 PF01464 Transglycosylase SLT domain SH08_RS09930 PF07317 Flagellar regulator YcgR SH08_RS09930 PF07238 PilZ domain SH08_RS09935 PF04226 Transglycosylase associated protein SH08_RS09945 PF01204 Trehalase SH08_RS09950 PF00381 PTS HPr component phosphorylation site SH08_RS09950 PF03610 PTS system fructose IIA component SH08_RS09950 PF05524 PEP-utilising enzyme, N-terminal SH08_RS09950 PF00391 PEP-utilising enzyme, mobile domain SH08_RS09955 PF02734 DAK2 domain SH08_RS09960 PF02733 Dak1 domain SH08_RS09965 PF02954 Bacterial regulatory protein, Fis family SH08_RS09965 PF00989 PAS fold SH08_RS09965 PF00158 Sigma-54 interaction domain SH08_RS09970 PF03212 Pertactin SH08_RS09970 PF03797 Autotransporter beta-domain SH08_RS09980 PF06071 Protein of unknown function (DUF933) SH08_RS09980 PF01926 50S ribosome-binding GTPase SH08_RS09985 PF01195 Peptidyl-tRNA hydrolase SH08_RS09990 PF10762 Protein of unknown function (DUF2583) SH08_RS09995 PF01740 STAS domain SH08_RS09995 PF00916 Sulfate permease family SH08_RS10000 PF14572 Phosphoribosyl synthetase-associated domain SH08_RS10000 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase SH08_RS10005 PF00288 GHMP kinases N terminal domain SH08_RS10005 PF08544 GHMP kinases C terminal SH08_RS10010 PF03550 Outer membrane lipoprotein LolB SH08_RS10015 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain SH08_RS10015 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain SH08_RS10015 PF01488 Shikimate / quinate 5-dehydrogenase SH08_RS10020 PF00472 RF-1 domain SH08_RS10020 PF03462 PCRF domain SH08_RS10025 PF13847 Methyltransferase domain SH08_RS10025 PF17827 PrmC N-terminal domain SH08_RS10030 PF04247 Invasion gene expression up-regulator, SirB SH08_RS10035 PF13369 Transglutaminase-like superfamily SH08_RS10040 PF00793 DAHP synthetase I family SH08_RS10045 PF13940 Toxin Ldr, type I toxin-antitoxin system SH08_RS10050 PF13940 Toxin Ldr, type I toxin-antitoxin system SH08_RS10055 PF01699 Sodium/calcium exchanger protein SH08_RS10060 PF06150 ChaB SH08_RS10065 PF04752 ChaC-like protein SH08_RS10070 PF02635 DsrE/DsrF-like family SH08_RS10075 PF11924 Inverse autotransporter, beta-domain SH08_RS10080 PF00072 Response regulator receiver domain SH08_RS10080 PF00196 Bacterial regulatory proteins, luxR family SH08_RS10085 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH08_RS10085 PF00672 HAMP domain SH08_RS10085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS10085 PF07730 Histidine kinase SH08_RS10095 PF07690 Major Facilitator Superfamily SH08_RS10100 PF00384 Molybdopterin oxidoreductase SH08_RS10100 PF01568 Molydopterin dinucleotide binding domain SH08_RS10100 PF14710 Respiratory nitrate reductase alpha N-terminal SH08_RS10105 PF14711 Respiratory nitrate reductase beta C-terminal SH08_RS10105 PF13247 4Fe-4S dicluster domain SH08_RS10110 PF02613 Nitrate reductase delta subunit SH08_RS10115 PF02665 Nitrate reductase gamma subunit SH08_RS10135 PF01842 ACT domain SH08_RS10135 PF00551 Formyl transferase SH08_RS10140 PF02810 SEC-C motif SH08_RS10145 PF01734 Patatin-like phospholipase SH08_RS10155 PF00483 Nucleotidyl transferase SH08_RS10160 PF00816 H-NS histone family SH08_RS10165 PF00265 Thymidine kinase SH08_RS10170 PF01609 Transposase DDE domain SH08_RS10170 PF13006 Insertion element 4 transposase N-terminal SH08_RS10180 PF00171 Aldehyde dehydrogenase family SH08_RS10180 PF00465 Iron-containing alcohol dehydrogenase SH08_RS10185 PF01914 MarC family integral membrane protein SH08_RS10190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS10195 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS10200 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS10200 PF12911 N-terminal TM domain of oligopeptide transport permease C SH08_RS10205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH08_RS10205 PF00005 ABC transporter SH08_RS10210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH08_RS10210 PF00005 ABC transporter SH08_RS10215 PF04269 Protein of unknown function, DUF440 SH08_RS10220 PF13091 PLD-like domain SH08_RS10220 PF13396 Phospholipase_D-nuclease N-terminal SH08_RS10230 PF07885 Ion channel SH08_RS10230 PF02254 TrkA-N domain SH08_RS10235 PF03795 YCII-related domain SH08_RS10240 PF03544 Gram-negative bacterial TonB protein C-terminal SH08_RS10245 PF03061 Thioesterase superfamily SH08_RS10250 PF04279 Intracellular septation protein A SH08_RS10260 PF03922 OmpW family SH08_RS10265 PF05974 Domain of unknown function (DUF892) SH08_RS10270 PF05974 Domain of unknown function (DUF892) SH08_RS10275 PF10685 Stress-induced bacterial acidophilic repeat motif SH08_RS10280 PF00290 Tryptophan synthase alpha chain SH08_RS10285 PF00291 Pyridoxal-phosphate dependent enzyme SH08_RS10290 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase SH08_RS10290 PF00218 Indole-3-glycerol phosphate synthase SH08_RS10295 PF00117 Glutamine amidotransferase class-I SH08_RS10295 PF00591 Glycosyl transferase family, a/b domain SH08_RS10295 PF02885 Glycosyl transferase family, helical bundle domain SH08_RS10300 PF04715 Anthranilate synthase component I, N terminal region SH08_RS10300 PF00425 chorismate binding enzyme SH08_RS10305 PF02811 PHP domain SH08_RS10310 PF01300 Telomere recombination SH08_RS10315 PF09972 Predicted membrane protein (DUF2207) SH08_RS10320 PF01479 S4 domain SH08_RS10320 PF00849 RNA pseudouridylate synthase SH08_RS10325 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SH08_RS10325 PF12557 Cob(I)alamin adenosyltransferase N terminal SH08_RS10330 PF00106 short chain dehydrogenase SH08_RS10340 PF08496 Peptidase family S49 N-terminal SH08_RS10340 PF01343 Peptidase family S49 SH08_RS10345 PF10692 Protein of unknown function (DUF2498) SH08_RS10355 PF01131 DNA topoisomerase SH08_RS10355 PF01396 Topoisomerase DNA binding C4 zinc finger SH08_RS10355 PF01751 Toprim domain SH08_RS10355 PF08272 Topoisomerase I zinc-ribbon-like SH08_RS10360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS10360 PF03466 LysR substrate binding domain SH08_RS10380 PF00694 Aconitase C-terminal domain SH08_RS10380 PF00330 Aconitase family (aconitate hydratase) SH08_RS10385 PF00925 GTP cyclohydrolase II SH08_RS10390 PF01569 PAP2 superfamily SH08_RS10395 PF06305 Lipopolysaccharide assembly protein A domain SH08_RS10400 PF18073 Rubredoxin metal binding domain SH08_RS10405 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH08_RS10410 PF01253 Translation initiation factor SUI1 SH08_RS10415 PF05433 Glycine zipper 2TM domain SH08_RS10420 PF00455 DeoR C terminal sensor domain SH08_RS10420 PF08220 DeoR-like helix-turn-helix domain SH08_RS10430 PF00563 EAL domain SH08_RS10430 PF13426 PAS domain SH08_RS10430 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS10440 PF00575 S1 RNA binding domain SH08_RS10440 PF00773 RNB domain SH08_RS10440 PF17876 Cold shock domain SH08_RS10440 PF08206 Ribonuclease B OB domain SH08_RS10455 PF04480 Protein of unknown function (DUF559) SH08_RS10460 PF00005 ABC transporter SH08_RS10465 PF00005 ABC transporter SH08_RS10465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH08_RS10470 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS10470 PF12911 N-terminal TM domain of oligopeptide transport permease C SH08_RS10475 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS10480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS10490 PF10820 Protein of unknown function (DUF2543) SH08_RS10495 PF00324 Amino acid permease SH08_RS10500 PF00120 Glutamine synthetase, catalytic domain SH08_RS10505 PF07722 Peptidase C26 SH08_RS10510 PF07883 Cupin domain SH08_RS10510 PF01381 Helix-turn-helix SH08_RS10515 PF00171 Aldehyde dehydrogenase family SH08_RS10520 PF01266 FAD dependent oxidoreductase SH08_RS10525 PF00202 Aminotransferase class-III SH08_RS10530 PF02954 Bacterial regulatory protein, Fis family SH08_RS10530 PF00158 Sigma-54 interaction domain SH08_RS10535 PF04012 PspA/IM30 family SH08_RS10540 PF06667 Phage shock protein B SH08_RS10545 PF04024 PspC domain SH08_RS10550 PF09584 Phage shock protein PspD (Phageshock_PspD) SH08_RS10555 PF00581 Rhodanese-like domain SH08_RS10560 PF00128 Alpha amylase, catalytic domain SH08_RS10565 PF01547 Bacterial extracellular solute-binding protein SH08_RS10570 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS10575 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS10580 PF00107 Zinc-binding dehydrogenase SH08_RS10585 PF01261 Xylose isomerase-like TIM barrel SH08_RS10590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH08_RS10590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH08_RS10595 PF03633 Glycosyl hydrolase family 65, C-terminal domain SH08_RS10595 PF03636 Glycosyl hydrolase family 65, N-terminal domain SH08_RS10595 PF03632 Glycosyl hydrolase family 65 central catalytic domain SH08_RS10600 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS10610 PF09381 Outer membrane protein G (OmpG) SH08_RS10615 PF00356 Bacterial regulatory proteins, lacI family SH08_RS10615 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH08_RS10620 PF04317 YcjX-like family, DUF463 SH08_RS10625 PF05128 Domain of unknown function (DUF697) SH08_RS10630 PF00158 Sigma-54 interaction domain SH08_RS10630 PF13188 PAS domain SH08_RS10630 PF18024 Helix-turn-helix domain SH08_RS10635 PF08534 Redoxin SH08_RS10640 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH08_RS10640 PF13378 Enolase C-terminal domain-like SH08_RS10645 PF00246 Zinc carboxypeptidase SH08_RS10655 PF12146 Serine aminopeptidase, S33 SH08_RS10660 PF03466 LysR substrate binding domain SH08_RS10660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS10670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS10675 PF00924 Mechanosensitive ion channel SH08_RS10680 PF05598 Transposase domain (DUF772) SH08_RS10680 PF01609 Transposase DDE domain SH08_RS10685 PF10749 Protein of unknown function (DUF2534) SH08_RS10690 PF00582 Universal stress protein family SH08_RS10695 PF00027 Cyclic nucleotide-binding domain SH08_RS10695 PF00325 Bacterial regulatory proteins, crp family SH08_RS10700 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH08_RS10700 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH08_RS10705 PF03806 AbgT putative transporter family SH08_RS10715 PF01546 Peptidase family M20/M25/M40 SH08_RS10720 PF01546 Peptidase family M20/M25/M40 SH08_RS10720 PF07687 Peptidase dimerisation domain SH08_RS10725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS10725 PF03466 LysR substrate binding domain SH08_RS10735 PF01713 Smr domain SH08_RS10740 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS10740 PF08448 PAS fold SH08_RS10745 PF01544 CorA-like Mg2+ transporter protein SH08_RS10755 PF00270 DEAD/DEAH box helicase SH08_RS10755 PF00271 Helicase conserved C-terminal domain SH08_RS10755 PF03880 DbpA RNA binding domain SH08_RS10760 PF01171 PP-loop family SH08_RS10765 PF00589 Phage integrase family SH08_RS10765 PF12167 Arm DNA-binding domain SH08_RS10770 PF06806 Putative excisionase (DUF1233) SH08_RS10775 PF06688 Protein of unknown function (DUF1187) SH08_RS10785 PF03837 RecT family SH08_RS10790 PF06630 Enterobacterial exodeoxyribonuclease VIII SH08_RS10790 PF12684 PDDEXK-like domain of unknown function (DUF3799) SH08_RS10800 PF04181 Rtr1/RPAP2 family SH08_RS10810 PF14163 Super-infection exclusion protein B SH08_RS10820 PF15943 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT SH08_RS10825 PF06254 Putative bacterial toxin ydaT SH08_RS10830 PF07120 Protein of unknown function (DUF1376) SH08_RS10835 PF01695 IstB-like ATP binding protein SH08_RS10840 PF07789 Protein of unknown function (DUF1627) SH08_RS10845 PF03245 Bacteriophage Rz lysis protein SH08_RS10850 PF02386 Cation transport protein SH08_RS10855 PF02195 ParB-like nuclease domain SH08_RS10870 PF06791 Prophage tail length tape measure protein SH08_RS10875 PF06316 Enterobacterial Ail/Lom protein SH08_RS10880 PF01609 Transposase DDE domain SH08_RS10880 PF05598 Transposase domain (DUF772) SH08_RS10885 PF13505 Outer membrane protein beta-barrel domain SH08_RS10900 PF07484 Phage Tail Collar Domain SH08_RS10900 PF08400 Prophage tail fibre N-terminal SH08_RS10900 PF03335 Phage tail fibre repeat SH08_RS10905 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH08_RS10910 PF00239 Resolvase, N terminal domain SH08_RS10910 PF02796 Helix-turn-helix domain of resolvase SH08_RS10920 PF00582 Universal stress protein family SH08_RS10925 PF00267 Gram-negative porin SH08_RS10930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH08_RS10930 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg SH08_RS10930 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase SH08_RS10930 PF10371 Domain of unknown function SH08_RS10930 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II SH08_RS10935 PF03891 Domain of unknown function (DUF333) SH08_RS10940 PF03724 META domain SH08_RS10945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH08_RS10945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH08_RS10950 PF11739 Dicarboxylate transport SH08_RS10955 PF13617 YnbE-like lipoprotein SH08_RS10960 PF07027 Protein of unknown function (DUF1318) SH08_RS10965 PF12833 Helix-turn-helix domain SH08_RS10965 PF14525 AraC-binding-like domain SH08_RS10970 PF00171 Aldehyde dehydrogenase family SH08_RS10975 PF02727 Copper amine oxidase, N2 domain SH08_RS10975 PF02728 Copper amine oxidase, N3 domain SH08_RS10975 PF07833 Copper amine oxidase N-terminal domain SH08_RS10975 PF01179 Copper amine oxidase, enzyme domain SH08_RS10980 PF00171 Aldehyde dehydrogenase family SH08_RS10980 PF01575 MaoC like domain SH08_RS10985 PF05138 Phenylacetic acid catabolic protein SH08_RS10990 PF06243 Phenylacetic acid degradation B SH08_RS10995 PF05138 Phenylacetic acid catabolic protein SH08_RS11000 PF01883 Iron-sulfur cluster assembly protein SH08_RS11005 PF00111 2Fe-2S iron-sulfur cluster binding domain SH08_RS11005 PF00970 Oxidoreductase FAD-binding domain SH08_RS11005 PF00175 Oxidoreductase NAD-binding domain SH08_RS11010 PF00378 Enoyl-CoA hydratase/isomerase SH08_RS11015 PF00378 Enoyl-CoA hydratase/isomerase SH08_RS11020 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH08_RS11020 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH08_RS11020 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain SH08_RS11025 PF03061 Thioesterase superfamily SH08_RS11030 PF00108 Thiolase, N-terminal domain SH08_RS11030 PF02803 Thiolase, C-terminal domain SH08_RS11035 PF14535 AMP-binding enzyme C-terminal domain SH08_RS11035 PF00501 AMP-binding enzyme SH08_RS11040 PF07848 PaaX-like protein SH08_RS11040 PF08223 PaaX-like protein C-terminal domain SH08_RS11045 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS11055 PF13276 HTH-like domain SH08_RS11055 PF00665 Integrase core domain SH08_RS11060 PF01527 Transposase SH08_RS11065 PF13936 Helix-turn-helix domain SH08_RS11065 PF00665 Integrase core domain SH08_RS11075 PF00248 Aldo/keto reductase family SH08_RS11080 PF10971 Protein of unknown function (DUF2773) SH08_RS11085 PF01066 CDP-alcohol phosphatidyltransferase SH08_RS11095 PF12147 Putative methyltransferase SH08_RS11095 PF12146 Serine aminopeptidase, S33 SH08_RS11100 PF00782 Dual specificity phosphatase, catalytic domain SH08_RS11105 PF02525 Flavodoxin-like fold SH08_RS11110 PF00270 DEAD/DEAH box helicase SH08_RS11110 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold SH08_RS11110 PF11898 Domain of unknown function (DUF3418) SH08_RS11110 PF04408 Helicase associated domain (HA2) SH08_RS11110 PF00271 Helicase conserved C-terminal domain SH08_RS11115 PF02698 DUF218 domain SH08_RS11120 PF00171 Aldehyde dehydrogenase family SH08_RS11125 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH08_RS11125 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH08_RS11130 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH08_RS11130 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH08_RS11135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH08_RS11135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH08_RS11140 PF01292 Prokaryotic cytochrome b561 SH08_RS11150 PF01848 Hok/gef family SH08_RS11155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH08_RS11155 PF00672 HAMP domain SH08_RS11155 PF02203 Tar ligand binding domain homologue SH08_RS11160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS11160 PF03466 LysR substrate binding domain SH08_RS11165 PF07063 Domain of unknown function (DUF1338) SH08_RS11170 PF04349 Periplasmic glucan biosynthesis protein, MdoG SH08_RS11180 PF04325 Protein of unknown function (DUF465) SH08_RS11185 PF13302 Acetyltransferase (GNAT) domain SH08_RS11190 PF18836 Beta solenoid repeat from YDCK SH08_RS11195 PF03595 Voltage-dependent anion channel SH08_RS11200 PF03848 Tellurite resistance protein TehB SH08_RS11205 PF11769 Protein of unknown function (DUF3313) SH08_RS11215 PF01797 Transposase IS200 like SH08_RS11220 PF07282 Putative transposase DNA-binding domain SH08_RS11220 PF12323 Helix-turn-helix domain SH08_RS11220 PF01385 Probable transposase SH08_RS11225 PF03594 Benzoate membrane transport protein SH08_RS11230 PF01381 Helix-turn-helix SH08_RS11230 PF07883 Cupin domain SH08_RS11235 PF12392 Collagenase SH08_RS11235 PF01136 Peptidase family U32 SH08_RS11240 PF10829 Protein of unknown function (DUF2554) SH08_RS11245 PF07927 HicA toxin of bacterial toxin-antitoxin, SH08_RS11250 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system SH08_RS11250 PF01381 Helix-turn-helix SH08_RS11255 PF00392 Bacterial regulatory proteins, gntR family SH08_RS11255 PF00155 Aminotransferase class I and II SH08_RS11260 PF13416 Bacterial extracellular solute-binding protein SH08_RS11265 PF08402 TOBE domain SH08_RS11265 PF00005 ABC transporter SH08_RS11270 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS11275 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS11280 PF00171 Aldehyde dehydrogenase family SH08_RS11290 PF10753 Toxin GhoT_OrtT SH08_RS11295 PF10735 Protein of unknown function (DUF2526) SH08_RS11300 PF04657 Putative inner membrane exporter, YdcZ SH08_RS11305 PF00583 Acetyltransferase (GNAT) family SH08_RS11310 PF00107 Zinc-binding dehydrogenase SH08_RS11310 PF16884 N-terminal domain of oxidoreductase SH08_RS11315 PF07729 FCD domain SH08_RS11315 PF00392 Bacterial regulatory proteins, gntR family SH08_RS11320 PF00593 TonB dependent receptor SH08_RS11320 PF07715 TonB-dependent Receptor Plug Domain SH08_RS11330 PF00324 Amino acid permease SH08_RS11335 PF13417 Glutathione S-transferase, N-terminal domain SH08_RS11340 PF17520 Family of unknown function (DUF5445) SH08_RS11345 PF03527 RHS protein SH08_RS11355 PF13808 DDE_Tnp_1-associated SH08_RS11355 PF01609 Transposase DDE domain SH08_RS11360 PF13808 DDE_Tnp_1-associated SH08_RS11360 PF01609 Transposase DDE domain SH08_RS11365 PF01361 Tautomerase enzyme SH08_RS11370 PF01613 Flavin reductase like domain SH08_RS11375 PF00797 N-acetyltransferase SH08_RS11380 PF02567 Phenazine biosynthesis-like protein SH08_RS11385 PF02665 Nitrate reductase gamma subunit SH08_RS11390 PF02613 Nitrate reductase delta subunit SH08_RS11395 PF14711 Respiratory nitrate reductase beta C-terminal SH08_RS11395 PF13247 4Fe-4S dicluster domain SH08_RS11400 PF00384 Molybdopterin oxidoreductase SH08_RS11400 PF14710 Respiratory nitrate reductase alpha N-terminal SH08_RS11400 PF01568 Molydopterin dinucleotide binding domain SH08_RS11405 PF07690 Major Facilitator Superfamily SH08_RS11415 PF00267 Gram-negative porin SH08_RS11420 PF00892 EamA-like transporter family SH08_RS11425 PF01568 Molydopterin dinucleotide binding domain SH08_RS11425 PF00384 Molybdopterin oxidoreductase SH08_RS11425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS11430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS11430 PF00384 Molybdopterin oxidoreductase SH08_RS11430 PF01568 Molydopterin dinucleotide binding domain SH08_RS11435 PF13247 4Fe-4S dicluster domain SH08_RS11435 PF12800 4Fe-4S binding domain SH08_RS11435 PF09163 Formate dehydrogenase N, transmembrane SH08_RS11440 PF01292 Prokaryotic cytochrome b561 SH08_RS11445 PF01381 Helix-turn-helix SH08_RS11450 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS11450 PF00107 Zinc-binding dehydrogenase SH08_RS11455 PF00390 Malic enzyme, N-terminal domain SH08_RS11455 PF03949 Malic enzyme, NAD binding domain SH08_RS11460 PF08136 30S ribosomal protein subunit S22 family SH08_RS11465 PF10684 Putative biofilm-dependent modulation protein SH08_RS11470 PF02566 OsmC-like protein SH08_RS11475 PF00005 ABC transporter SH08_RS11475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH08_RS11480 PF00005 ABC transporter SH08_RS11480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH08_RS11485 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS11485 PF12911 N-terminal TM domain of oligopeptide transport permease C SH08_RS11490 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS11495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS11500 PF01427 D-ala-D-ala dipeptidase SH08_RS11510 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS11515 PF02638 Glycosyl hydrolase-like 10 SH08_RS11520 PF13520 Amino acid permease SH08_RS11525 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH08_RS11535 PF00675 Insulinase (Peptidase family M16) SH08_RS11535 PF05193 Peptidase M16 inactive domain SH08_RS11540 PF07715 TonB-dependent Receptor Plug Domain SH08_RS11545 PF06472 ABC transporter transmembrane region 2 SH08_RS11545 PF00005 ABC transporter SH08_RS11550 PF04055 Radical SAM superfamily SH08_RS11550 PF13186 Iron-sulfur cluster-binding domain SH08_RS11555 PF00884 Sulfatase SH08_RS11560 PF12833 Helix-turn-helix domain SH08_RS11565 PF17073 Two-component-system connector protein SH08_RS11570 PF00384 Molybdopterin oxidoreductase SH08_RS11575 PF09160 FimH, mannose binding SH08_RS11580 PF00419 Fimbrial protein SH08_RS11585 PF00419 Fimbrial protein SH08_RS11590 PF13953 PapC C-terminal domain SH08_RS11590 PF00577 Outer membrane usher protein SH08_RS11600 PF13657 HipA N-terminal domain SH08_RS11600 PF07804 HipA-like C-terminal domain SH08_RS11610 PF03797 Autotransporter beta-domain SH08_RS11615 PF13018 Extended Signal Peptide of Type V secretion system SH08_RS11620 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH08_RS11620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH08_RS11625 PF04198 Putative sugar-binding domain SH08_RS11635 PF02653 Branched-chain amino acid transport system / permease component SH08_RS11640 PF02653 Branched-chain amino acid transport system / permease component SH08_RS11645 PF13407 Periplasmic binding protein domain SH08_RS11650 PF01791 DeoC/LacD family aldolase SH08_RS11655 PF03992 Antibiotic biosynthesis monooxygenase SH08_RS11660 PF13649 Methyltransferase domain SH08_RS11665 PF01062 Bestrophin, RFP-TM, chloride channel SH08_RS11675 PF01232 Mannitol dehydrogenase Rossmann domain SH08_RS11675 PF08125 Mannitol dehydrogenase C-terminal domain SH08_RS11680 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS11685 PF13811 Domain of unknown function (DUF4186) SH08_RS11690 PF04960 Glutaminase SH08_RS11695 PF00171 Aldehyde dehydrogenase family SH08_RS11700 PF03466 LysR substrate binding domain SH08_RS11700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS11710 PF07690 Major Facilitator Superfamily SH08_RS11715 PF01914 MarC family integral membrane protein SH08_RS11720 PF01047 MarR family SH08_RS11730 PF13999 MarB protein SH08_RS11735 PF00892 EamA-like transporter family SH08_RS11740 PF07690 Major Facilitator Superfamily SH08_RS11750 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS11755 PF04076 Bacterial OB fold (BOF) protein SH08_RS11760 PF02464 Competence-damaged protein SH08_RS11770 PF00106 short chain dehydrogenase SH08_RS11775 PF00392 Bacterial regulatory proteins, gntR family SH08_RS11775 PF07729 FCD domain SH08_RS11780 PF14001 YdfZ protein SH08_RS11785 PF08125 Mannitol dehydrogenase C-terminal domain SH08_RS11785 PF01232 Mannitol dehydrogenase Rossmann domain SH08_RS11790 PF00083 Sugar (and other) transporter SH08_RS11790 PF07690 Major Facilitator Superfamily SH08_RS11800 PF02796 Helix-turn-helix domain of resolvase SH08_RS11800 PF00239 Resolvase, N terminal domain SH08_RS11805 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH08_RS11810 PF07484 Phage Tail Collar Domain SH08_RS11810 PF03335 Phage tail fibre repeat SH08_RS11815 PF07471 Phage DNA packaging protein Nu1 SH08_RS11820 PF13132 Domain of unknown function (DUF3950) SH08_RS11825 PF07166 Protein of unknown function (DUF1398) SH08_RS11830 PF08178 GnsA/GnsB toxin of bacterial toxin-antitoxin system SH08_RS11840 PF00313 'Cold-shock' DNA-binding domain SH08_RS11845 PF10721 Protein of unknown function (DUF2514) SH08_RS11850 PF00959 Phage lysozyme SH08_RS11855 PF07041 Protein of unknown function (DUF1327) SH08_RS11860 PF04971 Bacteriophage P21 holin S SH08_RS11865 PF00313 'Cold-shock' DNA-binding domain SH08_RS11870 PF00313 'Cold-shock' DNA-binding domain SH08_RS11875 PF03589 Antitermination protein SH08_RS11880 PF06147 Protein of unknown function (DUF968) SH08_RS11895 PF01848 Hok/gef family SH08_RS11900 PF05016 ParE toxin of type II toxin-antitoxin system, parDE SH08_RS11905 PF04221 RelB antitoxin SH08_RS11910 PF14282 FlxA-like protein SH08_RS11925 PF01381 Helix-turn-helix SH08_RS11930 PF07151 Protein of unknown function (DUF1391) SH08_RS11945 PF05358 DicB protein SH08_RS11950 PF07358 Protein of unknown function (DUF1482) SH08_RS11965 PF00589 Phage integrase family SH08_RS11965 PF12167 Arm DNA-binding domain SH08_RS11970 PF00107 Zinc-binding dehydrogenase SH08_RS11970 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS11975 PF13378 Enolase C-terminal domain-like SH08_RS11975 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH08_RS11980 PF02694 Uncharacterised BCR, YnfA/UPF0060 family SH08_RS11985 PF06932 Protein of unknown function (DUF1283) SH08_RS11990 PF13302 Acetyltransferase (GNAT) domain SH08_RS11995 PF06788 Uncharacterised protein family (UPF0257) SH08_RS12000 PF06649 Protein of unknown function (DUF1161) SH08_RS12005 PF01568 Molydopterin dinucleotide binding domain SH08_RS12005 PF00384 Molybdopterin oxidoreductase SH08_RS12005 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS12010 PF01568 Molydopterin dinucleotide binding domain SH08_RS12010 PF00384 Molybdopterin oxidoreductase SH08_RS12010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS12015 PF12800 4Fe-4S binding domain SH08_RS12015 PF13247 4Fe-4S dicluster domain SH08_RS12020 PF04976 DMSO reductase anchor subunit (DmsC) SH08_RS12025 PF02613 Nitrate reductase delta subunit SH08_RS12030 PF00654 Voltage gated chloride channel SH08_RS12040 PF00480 ROK family SH08_RS12045 PF03466 LysR substrate binding domain SH08_RS12045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS12050 PF07690 Major Facilitator Superfamily SH08_RS12065 PF00089 Trypsin SH08_RS12070 PF00893 Small Multidrug Resistance protein SH08_RS12075 PF00893 Small Multidrug Resistance protein SH08_RS12080 PF01594 AI-2E family transporter SH08_RS12085 PF02233 NAD(P) transhydrogenase beta subunit SH08_RS12090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain SH08_RS12090 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch SH08_RS12090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain SH08_RS12095 PF07338 Protein of unknown function (DUF1471) SH08_RS12100 PF13520 Amino acid permease SH08_RS12110 PF06942 GlpM protein SH08_RS12115 PF00486 Transcriptional regulatory protein, C terminal SH08_RS12115 PF00072 Response regulator receiver domain SH08_RS12120 PF00672 HAMP domain SH08_RS12120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS12120 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS12125 PF05472 DNA replication terminus site-binding protein (Ter protein) SH08_RS12130 PF00206 Lyase SH08_RS12130 PF10415 Fumarase C C-terminus SH08_RS12135 PF05681 Fumarate hydratase (Fumerase) SH08_RS12135 PF05683 Fumarase C-terminus SH08_RS12140 PF01238 Phosphomannose isomerase type I SH08_RS12145 PF06097 Bacterial protein of unknown function (DUF945) SH08_RS12150 PF03573 outer membrane porin, OprD family SH08_RS12160 PF00703 Glycosyl hydrolases family 2 SH08_RS12160 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH08_RS12160 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH08_RS12165 PF00440 Bacterial regulatory proteins, tetR family SH08_RS12175 PF00356 Bacterial regulatory proteins, lacI family SH08_RS12175 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH08_RS12180 PF02378 Phosphotransferase system, EIIC SH08_RS12180 PF00367 phosphotransferase system, EIIB SH08_RS12185 PF00155 Aminotransferase class I and II SH08_RS12190 PF00962 Adenosine/AMP deaminase SH08_RS12195 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH08_RS12195 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH08_RS12205 PF05321 Haemolysin expression modulating protein SH08_RS12210 PF10754 Protein of unknown function (DUF2569) SH08_RS12215 PF02508 Rnf-Nqr subunit, membrane protein SH08_RS12220 PF04060 Putative Fe-S cluster SH08_RS12225 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH08_RS12225 PF10531 SLBB domain SH08_RS12225 PF13375 RnfC Barrel sandwich hybrid domain SH08_RS12225 PF12838 4Fe-4S dicluster domain SH08_RS12230 PF03116 NQR2, RnfD, RnfE family SH08_RS12235 PF04205 FMN-binding domain SH08_RS12240 PF02508 Rnf-Nqr subunit, membrane protein SH08_RS12245 PF10576 Iron-sulfur binding domain of endonuclease III SH08_RS12245 PF00633 Helix-hairpin-helix motif SH08_RS12245 PF00730 HhH-GPD superfamily base excision DNA repair protein SH08_RS12255 PF00854 POT family SH08_RS12260 PF00043 Glutathione S-transferase, C-terminal domain SH08_RS12260 PF02798 Glutathione S-transferase, N-terminal domain SH08_RS12265 PF08543 Phosphomethylpyrimidine kinase SH08_RS12270 PF00579 tRNA synthetases class I (W and Y) SH08_RS12270 PF01479 S4 domain SH08_RS12275 PF01243 Pyridoxamine 5'-phosphate oxidase SH08_RS12275 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region SH08_RS12280 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme SH08_RS12285 PF03702 Anhydro-N-acetylmuramic acid kinase SH08_RS12290 PF05433 Glycine zipper 2TM domain SH08_RS12295 PF01047 MarR family SH08_RS12300 PF07869 Protein of unknown function (DUF1656) SH08_RS12305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS12305 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS12310 PF04632 Fusaric acid resistance protein family SH08_RS12315 PF00080 Copper/zinc superoxide dismutase (SODC) SH08_RS12320 PF00248 Aldo/keto reductase family SH08_RS12325 PF06945 Protein of unknown function (DUF1289) SH08_RS12330 PF16925 Tetracyclin repressor-like, C-terminal domain SH08_RS12330 PF00440 Bacterial regulatory proteins, tetR family SH08_RS12335 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH08_RS12340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily SH08_RS12345 PF00929 Exonuclease SH08_RS12350 PF00271 Helicase conserved C-terminal domain SH08_RS12350 PF08494 DEAD/H associated SH08_RS12350 PF00270 DEAD/DEAH box helicase SH08_RS12355 PF00462 Glutaredoxin SH08_RS12360 PF00877 NlpC/P60 family SH08_RS12365 PF02777 Iron/manganese superoxide dismutases, C-terminal domain SH08_RS12365 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain SH08_RS12370 PF07690 Major Facilitator Superfamily SH08_RS12380 PF00356 Bacterial regulatory proteins, lacI family SH08_RS12385 PF03466 LysR substrate binding domain SH08_RS12385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS12390 PF07690 Major Facilitator Superfamily SH08_RS12400 PF00677 Lumazine binding domain SH08_RS12405 PF01554 MatE SH08_RS12410 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH08_RS12410 PF03212 Pertactin SH08_RS12425 PF08803 Putative mono-oxygenase ydhR SH08_RS12430 PF13454 FAD-NAD(P)-binding SH08_RS12440 PF01292 Prokaryotic cytochrome b561 SH08_RS12445 PF13247 4Fe-4S dicluster domain SH08_RS12455 PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain SH08_RS12455 PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 SH08_RS12460 PF12800 4Fe-4S binding domain SH08_RS12460 PF13247 4Fe-4S dicluster domain SH08_RS12465 PF10965 Protein of unknown function (DUF2767) SH08_RS12470 PF02887 Pyruvate kinase, alpha/beta domain SH08_RS12470 PF00224 Pyruvate kinase, barrel domain SH08_RS12475 PF04728 Lipoprotein leucine-zipper SH08_RS12480 PF01476 LysM domain SH08_RS12480 PF17969 L,D-transpeptidase C-terminal domain SH08_RS12480 PF03734 L,D-transpeptidase catalytic domain SH08_RS12485 PF02657 Fe-S metabolism associated domain SH08_RS12490 PF00266 Aminotransferase class-V SH08_RS12495 PF01458 Uncharacterized protein family (UPF0051) SH08_RS12500 PF00005 ABC transporter SH08_RS12505 PF01458 Uncharacterized protein family (UPF0051) SH08_RS12510 PF01521 Iron-sulphur cluster biosynthesis SH08_RS12515 PF15930 Domain of unknown function SH08_RS12520 PF03061 Thioesterase superfamily SH08_RS12525 PF01565 FAD binding domain SH08_RS12525 PF02913 FAD linked oxidases, C-terminal domain SH08_RS12525 PF13183 4Fe-4S dicluster domain SH08_RS12530 PF01594 AI-2E family transporter SH08_RS12535 PF08965 Domain of unknown function (DUF1870) SH08_RS12540 PF07690 Major Facilitator Superfamily SH08_RS12545 PF07690 Major Facilitator Superfamily SH08_RS12550 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH08_RS12550 PF08501 Shikimate dehydrogenase substrate binding domain SH08_RS12555 PF01487 Type I 3-dehydroquinase SH08_RS12560 PF01144 Coenzyme A transferase SH08_RS12565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain SH08_RS12565 PF02770 Acyl-CoA dehydrogenase, middle domain SH08_RS12565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain SH08_RS12570 PF02311 AraC-like ligand binding domain SH08_RS12570 PF12833 Helix-turn-helix domain SH08_RS12580 PF01012 Electron transfer flavoprotein domain SH08_RS12585 PF00766 Electron transfer flavoprotein FAD-binding domain SH08_RS12585 PF01012 Electron transfer flavoprotein domain SH08_RS12590 PF01494 FAD binding domain SH08_RS12605 PF02896 PEP-utilising enzyme, TIM barrel domain SH08_RS12605 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain SH08_RS12605 PF00391 PEP-utilising enzyme, mobile domain SH08_RS12615 PF03618 Kinase/pyrophosphorylase SH08_RS12620 PF00793 DAHP synthetase I family SH08_RS12625 PF10636 Hemin uptake protein hemP SH08_RS12630 PF02696 Uncharacterized ACR, YdiU/UPF0061 family SH08_RS12635 PF00563 EAL domain SH08_RS12640 PF00877 NlpC/P60 family SH08_RS12650 PF00255 Glutathione peroxidase SH08_RS12655 PF01032 FecCD transport family SH08_RS12660 PF00216 Bacterial DNA-binding protein SH08_RS12665 PF03483 B3/4 domain SH08_RS12665 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain SH08_RS12665 PF01588 Putative tRNA binding domain SH08_RS12665 PF03147 Ferredoxin-fold anticodon binding domain SH08_RS12665 PF03484 tRNA synthetase B5 domain SH08_RS12670 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain SH08_RS12670 PF01409 tRNA synthetases class II core domain (F) SH08_RS12680 PF00453 Ribosomal protein L20 SH08_RS12685 PF01632 Ribosomal protein L35 SH08_RS12690 PF00707 Translation initiation factor IF-3, C-terminal domain SH08_RS12690 PF05198 Translation initiation factor IF-3, N-terminal domain SH08_RS12695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) SH08_RS12695 PF02824 TGS domain SH08_RS12695 PF03129 Anticodon binding domain SH08_RS12695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH08_RS12710 PF04338 Protein of unknown function, DUF481 SH08_RS12715 PF00294 pfkB family carbohydrate kinase SH08_RS12720 PF11080 Endoribonuclease GhoS SH08_RS12725 PF03881 Fructosamine kinase SH08_RS12730 PF14002 YniB-like protein SH08_RS12735 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS12740 PF04307 LexA-binding, inner membrane-associated putative hydrolase SH08_RS12745 PF00375 Sodium:dicarboxylate symporter family SH08_RS12755 PF10729 Cell division activator CedA SH08_RS12760 PF18011 C-terminal domain found in long catalases SH08_RS12760 PF06628 Catalase-related immune-responsive SH08_RS12760 PF00199 Catalase SH08_RS12765 PF04794 YdjC-like protein SH08_RS12770 PF11975 Family 4 glycosyl hydrolase C-terminal domain SH08_RS12770 PF02056 Family 4 glycosyl hydrolase SH08_RS12775 PF12833 Helix-turn-helix domain SH08_RS12775 PF07883 Cupin domain SH08_RS12780 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit SH08_RS12785 PF02378 Phosphotransferase system, EIIC SH08_RS12790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS12795 PF04355 SmpA / OmlA family SH08_RS12800 PF02540 NAD synthase SH08_RS12815 PF05962 HutD SH08_RS12820 PF07813 LTXXQ motif family protein SH08_RS12825 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family SH08_RS12830 PF04996 Succinylarginine dihydrolase SH08_RS12835 PF00171 Aldehyde dehydrogenase family SH08_RS12840 PF04958 Arginine N-succinyltransferase beta subunit SH08_RS12845 PF00202 Aminotransferase class-III SH08_RS12850 PF03372 Endonuclease/Exonuclease/phosphatase family SH08_RS12855 PF09335 SNARE associated Golgi protein SH08_RS12865 PF09335 SNARE associated Golgi protein SH08_RS12870 PF02627 Carboxymuconolactone decarboxylase family SH08_RS12875 PF13416 Bacterial extracellular solute-binding protein SH08_RS12880 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS12885 PF00005 ABC transporter SH08_RS12890 PF00581 Rhodanese-like domain SH08_RS12895 PF01066 CDP-alcohol phosphatidyltransferase SH08_RS12900 PF00293 NUDIX domain SH08_RS12905 PF07383 Protein of unknown function (DUF1496) SH08_RS12910 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain SH08_RS12910 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SH08_RS12915 PF06889 Protein of unknown function (DUF1266) SH08_RS12920 PF01131 DNA topoisomerase SH08_RS12920 PF01751 Toprim domain SH08_RS12925 PF02769 AIR synthase related protein, C-terminal domain SH08_RS12925 PF00586 AIR synthase related protein, N-terminal domain SH08_RS12935 PF00881 Nitroreductase family SH08_RS12945 PF01343 Peptidase family S49 SH08_RS12950 PF17763 Glutaminase/Asparaginase C-terminal domain SH08_RS12950 PF00710 Asparaginase, N-terminal SH08_RS12955 PF00857 Isochorismatase family SH08_RS12960 PF00083 Sugar (and other) transporter SH08_RS12965 PF00455 DeoR C terminal sensor domain SH08_RS12965 PF08220 DeoR-like helix-turn-helix domain SH08_RS12970 PF00248 Aldo/keto reductase family SH08_RS12975 PF00294 pfkB family carbohydrate kinase SH08_RS12980 PF01116 Fructose-bisphosphate aldolase class-II SH08_RS12985 PF00107 Zinc-binding dehydrogenase SH08_RS12985 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS12990 PF00083 Sugar (and other) transporter SH08_RS12995 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS12995 PF00107 Zinc-binding dehydrogenase SH08_RS13000 PF07023 Protein of unknown function (DUF1315) SH08_RS13005 PF01641 SelR domain SH08_RS13010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH08_RS13010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH08_RS13015 PF01263 Aldose 1-epimerase SH08_RS13020 PF00248 Aldo/keto reductase family SH08_RS13025 PF06629 MltA-interacting protein MipA SH08_RS13030 PF06798 PrkA serine protein kinase C-terminal domain SH08_RS13030 PF08298 PrkA AAA domain SH08_RS13035 PF04285 Protein of unknown function (DUF444) SH08_RS13040 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS13040 PF17158 Membrane-associated sensor, integral membrane domain SH08_RS13045 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS13045 PF17155 Gammaproteobacterial periplasmic sensor domain SH08_RS13050 PF04073 Aminoacyl-tRNA editing domain SH08_RS13060 PF04284 Protein of unknown function (DUF441) SH08_RS13065 PF02311 AraC-like ligand binding domain SH08_RS13065 PF12833 Helix-turn-helix domain SH08_RS13070 PF07690 Major Facilitator Superfamily SH08_RS13075 PF04343 Protein of unknown function, DUF488 SH08_RS13080 PF03891 Domain of unknown function (DUF333) SH08_RS13085 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS13085 PF13185 GAF domain SH08_RS13095 PF04226 Transglycosylase associated protein SH08_RS13100 PF08956 Domain of unknown function (DUF1869) SH08_RS13105 PF09313 Domain of unknown function (DUF1971) SH08_RS13110 PF01810 LysE type translocator SH08_RS13115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS13115 PF03466 LysR substrate binding domain SH08_RS13125 PF02028 BCCT, betaine/carnitine/choline family transporter SH08_RS13130 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH08_RS13130 PF00355 Rieske [2Fe-2S] domain SH08_RS13135 PF00111 2Fe-2S iron-sulfur cluster binding domain SH08_RS13135 PF00175 Oxidoreductase NAD-binding domain SH08_RS13135 PF00970 Oxidoreductase FAD-binding domain SH08_RS13140 PF01612 3'-5' exonuclease SH08_RS13140 PF00570 HRDC domain SH08_RS13145 PF00501 AMP-binding enzyme SH08_RS13145 PF13193 AMP-binding enzyme C-terminal domain SH08_RS13150 PF03843 Outer membrane lipoprotein Slp family SH08_RS13155 PF00814 Glycoprotease family SH08_RS13160 PF04851 Type III restriction enzyme, res subunit SH08_RS13160 PF13307 Helicase C-terminal domain SH08_RS13165 PF01042 Endoribonuclease L-PSP SH08_RS13170 PF08986 Domain of unknown function (DUF1889) SH08_RS13175 PF03701 Uncharacterised protein family (UPF0181) SH08_RS13180 PF04715 Anthranilate synthase component I, N terminal region SH08_RS13180 PF00425 chorismate binding enzyme SH08_RS13185 PF00293 NUDIX domain SH08_RS13190 PF03315 Serine dehydratase beta chain SH08_RS13190 PF03313 Serine dehydratase alpha chain SH08_RS13195 PF12792 CSS motif domain associated with EAL SH08_RS13195 PF00563 EAL domain SH08_RS13200 PF03741 Integral membrane protein TerC family SH08_RS13200 PF03471 Transporter associated domain SH08_RS13210 PF03830 PTS system sorbose subfamily IIB component SH08_RS13210 PF03610 PTS system fructose IIA component SH08_RS13215 PF03609 PTS system sorbose-specific iic component SH08_RS13220 PF03613 PTS system mannose/fructose/sorbose family IID component SH08_RS13225 PF06173 Protein of unknown function (DUF986) SH08_RS13235 PF02659 Putative manganese efflux pump SH08_RS13240 PF13847 Methyltransferase domain SH08_RS13245 PF00313 'Cold-shock' DNA-binding domain SH08_RS13250 PF10736 Protein of unknown function (DUF2627) SH08_RS13260 PF13974 YebO-like protein SH08_RS13265 PF13998 MgrB protein SH08_RS13270 PF13996 YobH-like protein SH08_RS13275 PF01614 Bacterial transcriptional regulator SH08_RS13275 PF09339 IclR helix-turn-helix domain SH08_RS13280 PF07690 Major Facilitator Superfamily SH08_RS13290 PF11818 C-terminal domain of tail specific protease (DUF3340) SH08_RS13290 PF00595 PDZ domain SH08_RS13290 PF03572 Peptidase family S41 SH08_RS13290 PF17804 Tail specific protease N-terminal domain SH08_RS13295 PF04352 ProQ/FINO family SH08_RS13295 PF17516 ProQ C-terminal domain SH08_RS13300 PF13185 GAF domain SH08_RS13305 PF04403 Paraquat-inducible protein A SH08_RS13310 PF02470 MlaD protein SH08_RS13320 PF07351 Protein of unknown function (DUF1480) SH08_RS13325 PF07358 Protein of unknown function (DUF1482) SH08_RS13330 PF00149 Calcineurin-like phosphoesterase SH08_RS13340 PF10709 Protein of unknown function (DUF2511) SH08_RS13345 PF05425 Copper resistance protein D SH08_RS13350 PF04234 CopC domain SH08_RS13355 PF06440 DNA polymerase III, theta subunit SH08_RS13360 PF00795 Carbon-nitrogen hydrolase SH08_RS13365 PF00929 Exonuclease SH08_RS13370 PF00326 Prolyl oligopeptidase family SH08_RS13370 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain SH08_RS13375 PF04391 Protein of unknown function (DUF533) SH08_RS13385 PF13995 YebF-like protein SH08_RS13390 PF07130 YebG protein SH08_RS13395 PF02222 ATP-grasp domain SH08_RS13400 PF01081 KDPG and KHG aldolase SH08_RS13405 PF00920 Dehydratase family SH08_RS13410 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain SH08_RS13410 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain SH08_RS13420 PF01380 SIS domain SH08_RS13420 PF01418 Helix-turn-helix domain, rpiR family SH08_RS13425 PF02887 Pyruvate kinase, alpha/beta domain SH08_RS13425 PF00224 Pyruvate kinase, barrel domain SH08_RS13430 PF03279 Bacterial lipid A biosynthesis acyltransferase SH08_RS13435 PF08525 Opacity-associated protein A N-terminal motif SH08_RS13435 PF01551 Peptidase family M23 SH08_RS13435 PF01476 LysM domain SH08_RS13440 PF01297 Zinc-uptake complex component A periplasmic SH08_RS13445 PF00005 ABC transporter SH08_RS13450 PF00950 ABC 3 transport family SH08_RS13455 PF05496 Holliday junction DNA helicase RuvB P-loop domain SH08_RS13455 PF05491 RuvB C-terminal winged helix domain SH08_RS13455 PF17864 RuvB AAA lid domain SH08_RS13460 PF01330 RuvA N terminal domain SH08_RS13460 PF07499 RuvA, C-terminal domain SH08_RS13465 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family SH08_RS13470 PF02075 Crossover junction endodeoxyribonuclease RuvC SH08_RS13475 PF01709 Transcriptional regulator SH08_RS13480 PF00293 NUDIX domain SH08_RS13485 PF01336 OB-fold nucleic acid binding domain SH08_RS13485 PF02938 GAD domain SH08_RS13485 PF00152 tRNA synthetases class II (D, K and N) SH08_RS13490 PF00857 Isochorismatase family SH08_RS13495 PF01904 Protein of unknown function DUF72 SH08_RS13500 PF01124 MAPEG family SH08_RS13505 PF13649 Methyltransferase domain SH08_RS13510 PF08003 Protein of unknown function (DUF1698) SH08_RS13515 PF18364 Molybdopterin oxidoreductase N-terminal domain SH08_RS13515 PF00384 Molybdopterin oxidoreductase SH08_RS13515 PF01568 Molydopterin dinucleotide binding domain SH08_RS13520 PF03264 NapC/NirT cytochrome c family, N-terminal region SH08_RS13525 PF03932 CutC family SH08_RS13530 PF06185 YecM protein SH08_RS13535 PF00750 tRNA synthetases class I (R) SH08_RS13535 PF05746 DALR anticodon binding domain SH08_RS13535 PF03485 Arginyl tRNA synthetase N terminal domain SH08_RS13540 PF07007 Lysozyme inhibitor LprI SH08_RS13545 PF06366 Flagellar protein FlhE SH08_RS13550 PF00771 FHIPEP family SH08_RS13555 PF01312 FlhB HrpN YscU SpaS Family SH08_RS13560 PF04344 Chemotaxis phosphatase, CheZ SH08_RS13565 PF00072 Response regulator receiver domain SH08_RS13570 PF00072 Response regulator receiver domain SH08_RS13570 PF01339 CheB methylesterase SH08_RS13575 PF01739 CheR methyltransferase, SAM binding domain SH08_RS13575 PF03705 CheR methyltransferase, all-alpha domain SH08_RS13580 PF00672 HAMP domain SH08_RS13580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH08_RS13580 PF02203 Tar ligand binding domain homologue SH08_RS13585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH08_RS13585 PF02203 Tar ligand binding domain homologue SH08_RS13585 PF00672 HAMP domain SH08_RS13590 PF01584 CheW-like domain SH08_RS13595 PF01627 Hpt domain SH08_RS13595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS13595 PF01584 CheW-like domain SH08_RS13595 PF02895 Signal transducing histidine kinase, homodimeric domain SH08_RS13595 PF09078 CheY binding SH08_RS13600 PF13677 Membrane MotB of proton-channel complex MotA/MotB SH08_RS13600 PF00691 OmpA family SH08_RS13605 PF01618 MotA/TolQ/ExbB proton channel family SH08_RS13610 PF05280 Flagellar transcriptional activator (FlhC) SH08_RS13615 PF05247 Flagellar transcriptional activator (FlhD) SH08_RS13620 PF00582 Universal stress protein family SH08_RS13625 PF00982 Glycosyltransferase family 20 SH08_RS13630 PF02358 Trehalose-phosphatase SH08_RS13635 PF02653 Branched-chain amino acid transport system / permease component SH08_RS13640 PF00005 ABC transporter SH08_RS13645 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH08_RS13650 PF00210 Ferritin-like domain SH08_RS13655 PF10964 Protein of unknown function (DUF2766) SH08_RS13665 PF13992 YecR-like lipoprotein SH08_RS13670 PF00210 Ferritin-like domain SH08_RS13675 PF10678 Protein of unknown function (DUF2492) SH08_RS13680 PF03222 Tryptophan/tyrosine permease family SH08_RS13685 PF02810 SEC-C motif SH08_RS13685 PF03695 Uncharacterised protein family (UPF0149) SH08_RS13705 PF01066 CDP-alcohol phosphatidyltransferase SH08_RS13710 PF08459 UvrC Helix-hairpin-helix N-terminal SH08_RS13710 PF02151 UvrB/uvrC motif SH08_RS13710 PF01541 GIY-YIG catalytic domain SH08_RS13715 PF00072 Response regulator receiver domain SH08_RS13715 PF00196 Bacterial regulatory proteins, luxR family SH08_RS13725 PF10769 Protein of unknown function (DUF2594) SH08_RS13730 PF00196 Bacterial regulatory proteins, luxR family SH08_RS13730 PF03472 Autoinducer binding domain SH08_RS13735 PF00005 ABC transporter SH08_RS13740 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS13745 PF00291 Pyridoxal-phosphate dependent enzyme SH08_RS13750 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS13755 PF02899 Phage integrase, N-terminal SAM-like domain SH08_RS13760 PF04545 Sigma-70, region 4 SH08_RS13760 PF04539 Sigma-70 region 3 SH08_RS13760 PF04542 Sigma-70 region 2 SH08_RS13765 PF00700 Bacterial flagellin C-terminal helical region SH08_RS13765 PF00669 Bacterial flagellin N-terminal helical region SH08_RS13765 PF08884 Flagellin D3 domain SH08_RS13770 PF02465 Flagellar hook-associated protein 2 N-terminus SH08_RS13770 PF07195 Flagellar hook-associated protein 2 C-terminus SH08_RS13775 PF02561 Flagellar protein FliS SH08_RS13780 PF05400 Flagellar protein FliT SH08_RS13785 PF00128 Alpha amylase, catalytic domain SH08_RS13785 PF02806 Alpha amylase, C-terminal all-beta domain SH08_RS13790 PF13987 YedD-like protein SH08_RS13795 PF04143 Sulphur transport SH08_RS13800 PF01206 Sulfurtransferase TusA SH08_RS13805 PF02586 SOS response associated peptidase (SRAP) SH08_RS13810 PF00583 Acetyltransferase (GNAT) family SH08_RS13830 PF02049 Flagellar hook-basal body complex protein FliE SH08_RS13835 PF01514 Secretory protein of YscJ/FliF family SH08_RS13835 PF08345 Flagellar M-ring protein C-terminal SH08_RS13840 PF14841 FliG middle domain SH08_RS13840 PF14842 FliG N-terminal domain SH08_RS13840 PF01706 FliG C-terminal domain SH08_RS13845 PF02108 Flagellar assembly protein FliH SH08_RS13850 PF18269 T3SS EscN ATPase C-terminal domain SH08_RS13850 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain SH08_RS13855 PF02050 Flagellar FliJ protein SH08_RS13860 PF02120 Flagellar hook-length control protein FliK SH08_RS13865 PF03748 Flagellar basal body-associated protein FliL SH08_RS13870 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH08_RS13870 PF02154 Flagellar motor switch protein FliM SH08_RS13875 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term SH08_RS13875 PF16973 Flagellar motor switch protein FliN N-terminal SH08_RS13880 PF04347 Flagellar biosynthesis protein, FliO SH08_RS13885 PF00813 FliP family SH08_RS13890 PF01313 Bacterial export proteins, family 3 SH08_RS13895 PF01311 Bacterial export proteins, family 1 SH08_RS13900 PF00196 Bacterial regulatory proteins, luxR family SH08_RS13905 PF10781 Dextransucrase DSRB SH08_RS13910 PF10733 Protein of unknown function (DUF2525) SH08_RS13920 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS13920 PF17151 Periplasmic sensor domain SH08_RS13925 PF09926 Uncharacterized small protein (DUF2158) SH08_RS13930 PF05661 Protein of unknown function (DUF808) SH08_RS13935 PF00892 EamA-like transporter family SH08_RS13940 PF03852 DNA mismatch endonuclease Vsr SH08_RS13945 PF18284 DNA methylase N-terminal domain SH08_RS13945 PF00145 C-5 cytosine-specific DNA methylase SH08_RS13950 PF01966 HD domain SH08_RS13980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS13980 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS13985 PF00072 Response regulator receiver domain SH08_RS13985 PF00486 Transcriptional regulatory protein, C terminal SH08_RS13990 PF00576 HIUase/Transthyretin family SH08_RS13995 PF00174 Oxidoreductase molybdopterin binding domain SH08_RS14000 PF01794 Ferric reductase like transmembrane component SH08_RS14005 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment SH08_RS14010 PF01292 Prokaryotic cytochrome b561 SH08_RS14025 PF06167 Glucose-regulated metallo-peptidase M90 SH08_RS14035 PF09134 Invasin, domain 3 SH08_RS14035 PF02369 Bacterial Ig-like domain (group 1) SH08_RS14035 PF11924 Inverse autotransporter, beta-domain SH08_RS14045 PF07690 Major Facilitator Superfamily SH08_RS14045 PF00083 Sugar (and other) transporter SH08_RS14050 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus SH08_RS14050 PF01048 Phosphorylase superfamily SH08_RS14055 PF01709 Transcriptional regulator SH08_RS14065 PF01554 MatE SH08_RS14075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS14075 PF03466 LysR substrate binding domain SH08_RS14080 PF03466 LysR substrate binding domain SH08_RS14080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS14090 PF03734 L,D-transpeptidase catalytic domain SH08_RS14090 PF17969 L,D-transpeptidase C-terminal domain SH08_RS14095 PF02277 Phosphoribosyltransferase SH08_RS14100 PF02654 Cobalamin-5-phosphate synthase SH08_RS14105 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase SH08_RS14115 PF05598 Transposase domain (DUF772) SH08_RS14115 PF01609 Transposase DDE domain SH08_RS14125 PF00665 Integrase core domain SH08_RS14125 PF13276 HTH-like domain SH08_RS14130 PF01527 Transposase SH08_RS14135 PF00593 TonB dependent receptor SH08_RS14135 PF07715 TonB-dependent Receptor Plug Domain SH08_RS14145 PF03797 Autotransporter beta-domain SH08_RS14145 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH08_RS14145 PF13018 Extended Signal Peptide of Type V secretion system SH08_RS14155 PF04002 RadC-like JAB domain SH08_RS14160 PF06174 Protein of unknown function (DUF987) SH08_RS14165 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH08_RS14170 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH08_RS14185 PF10662 Ethanolamine utilisation - propanediol utilisation SH08_RS14190 PF04363 Protein of unknown function (DUF496) SH08_RS14195 PF04632 Fusaric acid resistance protein family SH08_RS14200 PF06445 GyrI-like small molecule binding domain SH08_RS14205 PF07943 Penicillin-binding protein 5, C-terminal domain SH08_RS14205 PF00768 D-alanyl-D-alanine carboxypeptidase SH08_RS14210 PF08411 Exonuclease C-terminal SH08_RS14210 PF00929 Exonuclease SH08_RS14215 PF01206 Sulfurtransferase TusA SH08_RS14220 PF04143 Sulphur transport SH08_RS14225 PF13520 Amino acid permease SH08_RS14230 PF03466 LysR substrate binding domain SH08_RS14230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS14235 PF01370 NAD dependent epimerase/dehydratase family SH08_RS14240 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system SH08_RS14245 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system SH08_RS14250 PF01634 ATP phosphoribosyltransferase SH08_RS14250 PF08029 HisG, C-terminal domain SH08_RS14255 PF00815 Histidinol dehydrogenase SH08_RS14260 PF00155 Aminotransferase class I and II SH08_RS14265 PF00475 Imidazoleglycerol-phosphate dehydratase SH08_RS14265 PF08645 Polynucleotide kinase 3 phosphatase SH08_RS14270 PF00117 Glutamine amidotransferase class-I SH08_RS14275 PF00977 Histidine biosynthesis protein SH08_RS14280 PF00977 Histidine biosynthesis protein SH08_RS14285 PF01502 Phosphoribosyl-AMP cyclohydrolase SH08_RS14285 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase SH08_RS14290 PF02706 Chain length determinant protein SH08_RS14295 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SH08_RS14295 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain SH08_RS14295 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain SH08_RS14300 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain SH08_RS14300 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH08_RS14305 PF05598 Transposase domain (DUF772) SH08_RS14305 PF01609 Transposase DDE domain SH08_RS14315 PF00534 Glycosyl transferases group 1 SH08_RS14320 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS14335 PF03275 UDP-galactopyranose mutase SH08_RS14340 PF01943 Polysaccharide biosynthesis protein SH08_RS14345 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase SH08_RS14350 PF00483 Nucleotidyl transferase SH08_RS14360 PF16363 GDP-mannose 4,6 dehydratase SH08_RS14365 PF00483 Nucleotidyl transferase SH08_RS14380 PF04230 Polysaccharide pyruvyl transferase SH08_RS14390 PF02397 Bacterial sugar transferase SH08_RS14395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH08_RS14395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH08_RS14395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH08_RS14395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH08_RS14400 PF01050 Mannose-6-phosphate isomerase SH08_RS14400 PF00483 Nucleotidyl transferase SH08_RS14405 PF13579 Glycosyl transferase 4-like domain SH08_RS14405 PF00534 Glycosyl transferases group 1 SH08_RS14410 PF00293 NUDIX domain SH08_RS14415 PF01370 NAD dependent epimerase/dehydratase family SH08_RS14420 PF16363 GDP-mannose 4,6 dehydratase SH08_RS14425 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS14430 PF00535 Glycosyl transferase family 2 SH08_RS14440 PF00534 Glycosyl transferases group 1 SH08_RS14440 PF13439 Glycosyltransferase Family 4 SH08_RS14445 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS14450 PF00535 Glycosyl transferase family 2 SH08_RS14455 PF02706 Chain length determinant protein SH08_RS14455 PF13807 G-rich domain on putative tyrosine kinase SH08_RS14455 PF13614 AAA domain SH08_RS14460 PF01451 Low molecular weight phosphotyrosine protein phosphatase SH08_RS14465 PF18412 Outer-membrane lipoprotein Wza C-terminal domain SH08_RS14465 PF10531 SLBB domain SH08_RS14465 PF02563 Polysaccharide biosynthesis/export protein SH08_RS14470 PF03741 Integral membrane protein TerC family SH08_RS14470 PF00571 CBS domain SH08_RS14470 PF03471 Transporter associated domain SH08_RS14475 PF05170 AsmA family SH08_RS14480 PF00692 dUTPase SH08_RS14485 PF00485 Phosphoribulokinase / Uridine kinase family SH08_RS14490 PF13426 PAS domain SH08_RS14490 PF08448 PAS fold SH08_RS14490 PF08447 PAS fold SH08_RS14490 PF05231 MASE1 SH08_RS14490 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS14490 PF00563 EAL domain SH08_RS14495 PF06029 AlkA N-terminal domain SH08_RS14495 PF00730 HhH-GPD superfamily base excision DNA repair protein SH08_RS14505 PF00012 Hsp70 protein SH08_RS14515 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) SH08_RS14525 PF00092 von Willebrand factor type A domain SH08_RS14530 PF13533 Biotin-lipoyl like SH08_RS14535 PF00873 AcrB/AcrD/AcrF family SH08_RS14540 PF00873 AcrB/AcrD/AcrF family SH08_RS14545 PF07690 Major Facilitator Superfamily SH08_RS14550 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS14550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS14550 PF00672 HAMP domain SH08_RS14555 PF00072 Response regulator receiver domain SH08_RS14555 PF00486 Transcriptional regulatory protein, C terminal SH08_RS14560 PF07411 Domain of unknown function (DUF1508) SH08_RS14565 PF16325 Peptidase family U32 C-terminal domain SH08_RS14565 PF01136 Peptidase family U32 SH08_RS14585 PF00781 Diacylglycerol kinase catalytic domain SH08_RS14595 PF01527 Transposase SH08_RS14600 PF13333 Integrase core domain SH08_RS14600 PF13276 HTH-like domain SH08_RS14600 PF00665 Integrase core domain SH08_RS14605 PF08220 DeoR-like helix-turn-helix domain SH08_RS14610 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS14610 PF00107 Zinc-binding dehydrogenase SH08_RS14615 PF03611 PTS system sugar-specific permease component SH08_RS14620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS14625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS14630 PF08013 Tagatose 6 phosphate kinase SH08_RS14635 PF01116 Fructose-bisphosphate aldolase class-II SH08_RS14640 PF01791 DeoC/LacD family aldolase SH08_RS14645 PF03825 Nucleoside H+ symporter SH08_RS14650 PF03747 ADP-ribosylglycohydrolase SH08_RS14655 PF00294 pfkB family carbohydrate kinase SH08_RS14660 PF07702 UTRA domain SH08_RS14660 PF00392 Bacterial regulatory proteins, gntR family SH08_RS14665 PF01183 Glycosyl hydrolases family 25 SH08_RS14670 PF08543 Phosphomethylpyrimidine kinase SH08_RS14675 PF02110 Hydroxyethylthiazole kinase family SH08_RS14680 PF02583 Metal-sensitive transcriptional repressor SH08_RS14685 PF03824 High-affinity nickel-transport protein SH08_RS14690 PF11776 Nickel/cobalt transporter regulator SH08_RS14695 PF00419 Fimbrial protein SH08_RS14700 PF13953 PapC C-terminal domain SH08_RS14700 PF00577 Outer membrane usher protein SH08_RS14700 PF13954 PapC N-terminal domain SH08_RS14705 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS14705 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS14710 PF00419 Fimbrial protein SH08_RS14720 PF10836 Protein of unknown function (DUF2574) SH08_RS14725 PF10609 NUBPL iron-transfer P-loop NTPase SH08_RS14730 PF01588 Putative tRNA binding domain SH08_RS14730 PF09334 tRNA synthetases class I (M) SH08_RS14735 PF05406 WGR domain SH08_RS14745 PF13569 Domain of unknown function (DUF4132) SH08_RS14755 PF07728 AAA domain (dynein-related subfamily) SH08_RS14765 PF05762 VWA domain containing CoxE-like protein SH08_RS14770 PF04434 SWIM zinc finger SH08_RS14775 PF06998 Protein of unknown function (DUF1307) SH08_RS14780 PF07308 Protein of unknown function (DUF1456) SH08_RS14785 PF04397 LytTr DNA-binding domain SH08_RS14785 PF00072 Response regulator receiver domain SH08_RS14790 PF06580 Histidine kinase SH08_RS14790 PF07694 5TMR of 5TMR-LYT SH08_RS14795 PF13411 MerR HTH family regulatory protein SH08_RS14805 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS14810 PF00005 ABC transporter SH08_RS14815 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS14820 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH08_RS14825 PF00933 Glycosyl hydrolase family 3 N terminal domain SH08_RS14825 PF01915 Glycosyl hydrolase family 3 C-terminal domain SH08_RS14825 PF14310 Fibronectin type III-like domain SH08_RS14830 PF09330 D-lactate dehydrogenase, membrane binding SH08_RS14830 PF01565 FAD binding domain SH08_RS14835 PF00768 D-alanyl-D-alanine carboxypeptidase SH08_RS14840 PF04893 Yip1 domain SH08_RS14845 PF09335 SNARE associated Golgi protein SH08_RS14865 PF01207 Dihydrouridine synthase (Dus) SH08_RS14870 PF03788 LrgA family SH08_RS14875 PF04172 LrgB-like family SH08_RS14880 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region SH08_RS14880 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region SH08_RS14885 PF02698 DUF218 domain SH08_RS14890 PF10808 Protein of unknown function (DUF2542) SH08_RS14895 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS14895 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH08_RS14900 PF01180 Dihydroorotate dehydrogenase SH08_RS14905 PF02653 Branched-chain amino acid transport system / permease component SH08_RS14910 PF03400 IS1 transposase SH08_RS14920 PF13407 Periplasmic binding protein domain SH08_RS14925 PF00356 Bacterial regulatory proteins, lacI family SH08_RS14935 PF04235 Protein of unknown function (DUF418) SH08_RS14940 PF01227 GTP cyclohydrolase I SH08_RS14950 PF00756 Putative esterase SH08_RS14955 PF00593 TonB dependent receptor SH08_RS14955 PF07715 TonB-dependent Receptor Plug Domain SH08_RS14960 PF00324 Amino acid permease SH08_RS14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS14965 PF03466 LysR substrate binding domain SH08_RS14970 PF03601 Conserved hypothetical protein 698 SH08_RS14975 PF01261 Xylose isomerase-like TIM barrel SH08_RS14980 PF00294 pfkB family carbohydrate kinase SH08_RS14985 PF07662 Na+ dependent nucleoside transporter C-terminus SH08_RS14985 PF01773 Na+ dependent nucleoside transporter N-terminus SH08_RS14990 PF01156 Inosine-uridine preferring nucleoside hydrolase SH08_RS14995 PF00027 Cyclic nucleotide-binding domain SH08_RS15000 PF07662 Na+ dependent nucleoside transporter C-terminus SH08_RS15000 PF01773 Na+ dependent nucleoside transporter N-terminus SH08_RS15005 PF04227 Indigoidine synthase A like protein SH08_RS15010 PF00294 pfkB family carbohydrate kinase SH08_RS15015 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS15015 PF02378 Phosphotransferase system, EIIC SH08_RS15020 PF00294 pfkB family carbohydrate kinase SH08_RS15025 PF00381 PTS HPr component phosphorylation site SH08_RS15025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS15030 PF07690 Major Facilitator Superfamily SH08_RS15035 PF03692 Putative zinc- or iron-chelating domain SH08_RS15040 PF09285 Elongation factor P, C-terminal SH08_RS15040 PF08207 Elongation factor P (EF-P) KOW-like domain SH08_RS15040 PF01132 Elongation factor P (EF-P) OB domain SH08_RS15045 PF01232 Mannitol dehydrogenase Rossmann domain SH08_RS15045 PF08125 Mannitol dehydrogenase C-terminal domain SH08_RS15050 PF07683 Cobalamin synthesis protein cobW C-terminal domain SH08_RS15050 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH08_RS15055 PF01569 PAP2 superfamily SH08_RS15060 PF00877 NlpC/P60 family SH08_RS15065 PF12792 CSS motif domain associated with EAL SH08_RS15065 PF00563 EAL domain SH08_RS15070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS15075 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS15080 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS15080 PF12911 N-terminal TM domain of oligopeptide transport permease C SH08_RS15085 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH08_RS15085 PF00005 ABC transporter SH08_RS15090 PF13989 YejG-like protein SH08_RS15095 PF07690 Major Facilitator Superfamily SH08_RS15100 PF01479 S4 domain SH08_RS15100 PF00849 RNA pseudouridylate synthase SH08_RS15105 PF00271 Helicase conserved C-terminal domain SH08_RS15105 PF04851 Type III restriction enzyme, res subunit SH08_RS15110 PF01386 Ribosomal L25p family SH08_RS15115 PF04245 37-kD nucleoid-associated bacterial protein SH08_RS15120 PF07208 Protein of unknown function (DUF1414) SH08_RS15125 PF11893 Domain of unknown function (DUF3413) SH08_RS15125 PF00884 Sulfatase SH08_RS15135 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH08_RS15135 PF03797 Autotransporter beta-domain SH08_RS15135 PF03212 Pertactin SH08_RS15140 PF05598 Transposase domain (DUF772) SH08_RS15140 PF01609 Transposase DDE domain SH08_RS15150 PF00072 Response regulator receiver domain SH08_RS15150 PF00196 Bacterial regulatory proteins, luxR family SH08_RS15155 PF03918 Cytochrome C biogenesis protein SH08_RS15160 PF08534 Redoxin SH08_RS15165 PF01578 Cytochrome C assembly protein SH08_RS15165 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal SH08_RS15170 PF03100 CcmE SH08_RS15175 PF04995 Heme exporter protein D (CcmD) SH08_RS15180 PF01578 Cytochrome C assembly protein SH08_RS15185 PF03379 CcmB protein SH08_RS15190 PF00005 ABC transporter SH08_RS15195 PF03264 NapC/NirT cytochrome c family, N-terminal region SH08_RS15200 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) SH08_RS15205 PF13237 4Fe-4S dicluster domain SH08_RS15205 PF12801 4Fe-4S binding domain SH08_RS15210 PF12800 4Fe-4S binding domain SH08_RS15210 PF12838 4Fe-4S dicluster domain SH08_RS15215 PF00384 Molybdopterin oxidoreductase SH08_RS15215 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS15215 PF01568 Molydopterin dinucleotide binding domain SH08_RS15220 PF03927 NapD protein SH08_RS15225 PF00037 4Fe-4S binding domain SH08_RS15225 PF12800 4Fe-4S binding domain SH08_RS15225 PF13187 4Fe-4S dicluster domain SH08_RS15235 PF03974 Ecotin SH08_RS15240 PF06039 Malate:quinone oxidoreductase (Mqo) SH08_RS15245 PF00005 ABC transporter SH08_RS15250 PF13532 2OG-Fe(II) oxygenase superfamily SH08_RS15255 PF12833 Helix-turn-helix domain SH08_RS15255 PF02805 Metal binding domain of Ada SH08_RS15255 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain SH08_RS15255 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain SH08_RS15260 PF02424 ApbE family SH08_RS15265 PF00267 Gram-negative porin SH08_RS15280 PF16359 RcsD-ABL domain SH08_RS15280 PF01627 Hpt domain SH08_RS15280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS15285 PF00196 Bacterial regulatory proteins, luxR family SH08_RS15285 PF00072 Response regulator receiver domain SH08_RS15290 PF00072 Response regulator receiver domain SH08_RS15290 PF09456 RcsC Alpha-Beta-Loop (ABL) SH08_RS15290 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS15290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS15295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS15295 PF00989 PAS fold SH08_RS15295 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS15300 PF00158 Sigma-54 interaction domain SH08_RS15300 PF00072 Response regulator receiver domain SH08_RS15300 PF02954 Bacterial regulatory protein, Fis family SH08_RS15305 PF01144 Coenzyme A transferase SH08_RS15310 PF01144 Coenzyme A transferase SH08_RS15315 PF02667 Short chain fatty acid transporter SH08_RS15320 PF02803 Thiolase, C-terminal domain SH08_RS15320 PF00108 Thiolase, N-terminal domain SH08_RS15325 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) SH08_RS15330 PF08486 Stage II sporulation protein SH08_RS15330 PF10062 Predicted secreted protein (DUF2300) SH08_RS15335 PF00207 Alpha-2-macroglobulin family SH08_RS15335 PF07703 Alpha-2-macroglobulin bait region domain SH08_RS15335 PF01835 MG2 domain SH08_RS15340 PF00207 Alpha-2-macroglobulin family SH08_RS15340 PF07703 Alpha-2-macroglobulin bait region domain SH08_RS15340 PF01835 MG2 domain SH08_RS15345 PF06672 Protein of unknown function (DUF1175) SH08_RS15350 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) SH08_RS15355 PF03989 DNA gyrase C-terminal domain, beta-propeller SH08_RS15355 PF00521 DNA gyrase/topoisomerase IV, subunit A SH08_RS15365 PF12951 Passenger-associated-transport-repeat SH08_RS15365 PF02415 Chlamydia polymorphic membrane protein (Chlamydia_PMP) repeat SH08_RS15365 PF03797 Autotransporter beta-domain SH08_RS15375 PF03477 ATP cone domain SH08_RS15375 PF00317 Ribonucleotide reductase, all-alpha domain SH08_RS15375 PF02867 Ribonucleotide reductase, barrel domain SH08_RS15380 PF00268 Ribonucleotide reductase, small chain SH08_RS15385 PF00111 2Fe-2S iron-sulfur cluster binding domain SH08_RS15400 PF03009 Glycerophosphoryl diester phosphodiesterase family SH08_RS15405 PF07690 Major Facilitator Superfamily SH08_RS15410 PF04324 BFD-like [2Fe-2S] binding domain SH08_RS15410 PF01266 FAD dependent oxidoreductase SH08_RS15415 PF00890 FAD binding domain SH08_RS15420 PF13183 4Fe-4S dicluster domain SH08_RS15420 PF02754 Cysteine-rich domain SH08_RS15425 PF04754 Putative transposase, YhgA-like SH08_RS15435 PF03328 HpcH/HpaI aldolase/citrate lyase family SH08_RS15440 PF07690 Major Facilitator Superfamily SH08_RS15450 PF09339 IclR helix-turn-helix domain SH08_RS15450 PF01614 Bacterial transcriptional regulator SH08_RS15455 PF00994 Probable molybdopterin binding domain SH08_RS15460 PF07437 YfaZ precursor SH08_RS15465 PF00293 NUDIX domain SH08_RS15470 PF00300 Histidine phosphatase superfamily (branch 1) SH08_RS15475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family SH08_RS15480 PF00535 Glycosyl transferase family 2 SH08_RS15485 PF01370 NAD dependent epimerase/dehydratase family SH08_RS15485 PF02911 Formyl transferase, C-terminal domain SH08_RS15485 PF00551 Formyl transferase SH08_RS15490 PF01522 Polysaccharide deacetylase SH08_RS15495 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase SH08_RS15500 PF00892 EamA-like transporter family SH08_RS15515 PF13193 AMP-binding enzyme C-terminal domain SH08_RS15515 PF00501 AMP-binding enzyme SH08_RS15520 PF13378 Enolase C-terminal domain-like SH08_RS15525 PF00378 Enoyl-CoA hydratase/isomerase SH08_RS15530 PF12697 Alpha/beta hydrolase family SH08_RS15535 PF16582 Middle domain of thiamine pyrophosphate SH08_RS15535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH08_RS15535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH08_RS15540 PF00425 chorismate binding enzyme SH08_RS15545 PF05957 Bacterial protein of unknown function (DUF883) SH08_RS15550 PF13673 Acetyltransferase (GNAT) domain SH08_RS15555 PF12706 Beta-lactamase superfamily domain SH08_RS15560 PF02902 Ulp1 protease family, C-terminal catalytic domain SH08_RS15565 PF12450 von Willebrand factor SH08_RS15565 PF00092 von Willebrand factor type A domain SH08_RS15565 PF12034 Domain of unknown function (DUF3520) SH08_RS15570 PF04389 Peptidase family M28 SH08_RS15575 PF08974 Domain of unknown function (DUF1877) SH08_RS15595 PF00361 Proton-conducting membrane transporter SH08_RS15600 PF00361 Proton-conducting membrane transporter SH08_RS15605 PF00361 Proton-conducting membrane transporter SH08_RS15605 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH08_RS15610 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH08_RS15615 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 SH08_RS15620 PF12838 4Fe-4S dicluster domain SH08_RS15625 PF00146 NADH dehydrogenase SH08_RS15630 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SH08_RS15630 PF01568 Molydopterin dinucleotide binding domain SH08_RS15630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain SH08_RS15630 PF00384 Molybdopterin oxidoreductase SH08_RS15635 PF10531 SLBB domain SH08_RS15635 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region SH08_RS15635 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit SH08_RS15645 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH08_RS15645 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH08_RS15650 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH08_RS15655 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 SH08_RS15660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS15660 PF03466 LysR substrate binding domain SH08_RS15665 PF00155 Aminotransferase class I and II SH08_RS15675 PF02080 TrkA-C domain SH08_RS15675 PF03600 Citrate transporter SH08_RS15680 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS15685 PF03887 YfbU domain SH08_RS15690 PF04217 Protein of unknown function, DUF412 SH08_RS15700 PF00871 Acetokinase family SH08_RS15705 PF01515 Phosphate acetyl/butaryl transferase SH08_RS15705 PF07085 DRTGG domain SH08_RS15710 PF03606 C4-dicarboxylate anaerobic carrier SH08_RS15715 PF00293 NUDIX domain SH08_RS15720 PF12850 Calcineurin-like phosphoesterase superfamily domain SH08_RS15725 PF14834 Glutathione S-transferase, C-terminal domain SH08_RS15725 PF02798 Glutathione S-transferase, N-terminal domain SH08_RS15730 PF00043 Glutathione S-transferase, C-terminal domain SH08_RS15730 PF02798 Glutathione S-transferase, N-terminal domain SH08_RS15735 PF02152 Dihydroneopterin aldolase SH08_RS15740 PF08338 Domain of unknown function (DUF1731) SH08_RS15740 PF01370 NAD dependent epimerase/dehydratase family SH08_RS15745 PF04754 Putative transposase, YhgA-like SH08_RS15750 PF00005 ABC transporter SH08_RS15755 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS15760 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS15765 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS15770 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS15775 PF02441 Flavoprotein SH08_RS15780 PF00156 Phosphoribosyl transferase domain SH08_RS15785 PF02674 Colicin V production protein SH08_RS15790 PF05036 Sporulation related domain SH08_RS15795 PF08245 Mur ligase middle domain SH08_RS15795 PF02875 Mur ligase family, glutamate ligase domain SH08_RS15800 PF01039 Carboxyl transferase domain SH08_RS15800 PF17848 Acetyl-coA carboxylase zinc finger domain SH08_RS15805 PF09335 SNARE associated Golgi protein SH08_RS15810 PF01416 tRNA pseudouridine synthase SH08_RS15815 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH08_RS15815 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH08_RS15820 PF11890 Domain of unknown function (DUF3410) SH08_RS15820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH08_RS15820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH08_RS15830 PF07690 Major Facilitator Superfamily SH08_RS15835 PF00109 Beta-ketoacyl synthase, N-terminal domain SH08_RS15835 PF02801 Beta-ketoacyl synthase, C-terminal domain SH08_RS15840 PF01266 FAD dependent oxidoreductase SH08_RS15840 PF05430 S-adenosyl-L-methionine-dependent methyltransferase SH08_RS15845 PF08891 YfcL protein SH08_RS15850 PF04315 Elongation factor P hydroxylase SH08_RS15855 PF01925 Sulfite exporter TauE/SafE SH08_RS15860 PF03411 Penicillin-insensitive murein endopeptidase SH08_RS15865 PF01264 Chorismate synthase SH08_RS15870 PF05175 Methyltransferase small domain SH08_RS15875 PF01713 Smr domain SH08_RS15880 PF11245 Protein of unknown function (DUF2544) SH08_RS15885 PF00419 Fimbrial protein SH08_RS15890 PF00419 Fimbrial protein SH08_RS15895 PF00419 Fimbrial protein SH08_RS15900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS15900 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS15910 PF00419 Fimbrial protein SH08_RS15915 PF00300 Histidine phosphatase superfamily (branch 1) SH08_RS15920 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SH08_RS15920 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain SH08_RS15920 PF00378 Enoyl-CoA hydratase/isomerase SH08_RS15925 PF02803 Thiolase, C-terminal domain SH08_RS15925 PF00108 Thiolase, N-terminal domain SH08_RS15930 PF04175 Protein of unknown function (DUF406) SH08_RS15935 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) SH08_RS15945 PF04333 MlaA lipoprotein SH08_RS15950 PF01226 Formate/nitrite transporter SH08_RS15960 PF13356 Arm DNA-binding domain SH08_RS15960 PF00589 Phage integrase family SH08_RS15960 PF14659 Phage integrase, N-terminal SAM-like domain SH08_RS15965 PF04138 GtrA-like protein SH08_RS15970 PF00535 Glycosyl transferase family 2 SH08_RS15980 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH08_RS15985 PF02413 Caudovirales tail fibre assembly protein, lambda gpK SH08_RS15995 PF05869 DNA N-6-adenine-methyltransferase (Dam) SH08_RS16000 PF06069 PerC transcriptional activator SH08_RS16020 PF10065 Uncharacterized conserved protein (DUF2303) SH08_RS16045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS16045 PF03466 LysR substrate binding domain SH08_RS16050 PF02447 GntP family permease SH08_RS16055 PF00291 Pyridoxal-phosphate dependent enzyme SH08_RS16060 PF07690 Major Facilitator Superfamily SH08_RS16065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS16065 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS16070 PF00196 Bacterial regulatory proteins, luxR family SH08_RS16070 PF00072 Response regulator receiver domain SH08_RS16075 PF00072 Response regulator receiver domain SH08_RS16075 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS16075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS16075 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS16075 PF01627 Hpt domain SH08_RS16080 PF02515 CoA-transferase family III SH08_RS16085 PF03547 Membrane transport protein SH08_RS16090 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH08_RS16090 PF00205 Thiamine pyrophosphate enzyme, central domain SH08_RS16090 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH08_RS16095 PF02515 CoA-transferase family III SH08_RS16100 PF10938 YfdX protein SH08_RS16115 PF10810 Protein of unknown function (DUF2545) SH08_RS16120 PF03279 Bacterial lipid A biosynthesis acyltransferase SH08_RS16125 PF00155 Aminotransferase class I and II SH08_RS16130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS16130 PF07694 5TMR of 5TMR-LYT SH08_RS16130 PF06580 Histidine kinase SH08_RS16135 PF04397 LytTr DNA-binding domain SH08_RS16135 PF00072 Response regulator receiver domain SH08_RS16140 PF12833 Helix-turn-helix domain SH08_RS16145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS16145 PF05524 PEP-utilising enzyme, N-terminal SH08_RS16145 PF00391 PEP-utilising enzyme, mobile domain SH08_RS16145 PF00381 PTS HPr component phosphorylation site SH08_RS16145 PF02896 PEP-utilising enzyme, TIM barrel domain SH08_RS16150 PF05343 M42 glutamyl aminopeptidase SH08_RS16155 PF00557 Metallopeptidase family M24 SH08_RS16155 PF01321 Creatinase/Prolidase N-terminal domain SH08_RS16160 PF02378 Phosphotransferase system, EIIC SH08_RS16165 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS16170 PF02685 Glucokinase SH08_RS16175 PF00654 Voltage gated chloride channel SH08_RS16180 PF10697 Protein of unknown function (DUF2502) SH08_RS16190 PF01566 Natural resistance-associated macrophage protein SH08_RS16195 PF07662 Na+ dependent nucleoside transporter C-terminus SH08_RS16195 PF01773 Na+ dependent nucleoside transporter N-terminus SH08_RS16195 PF07670 Nucleoside recognition SH08_RS16200 PF01609 Transposase DDE domain SH08_RS16205 PF00563 EAL domain SH08_RS16205 PF05231 MASE1 SH08_RS16220 PF07037 Putative transcription regulator (DUF1323) SH08_RS16225 PF07037 Putative transcription regulator (DUF1323) SH08_RS16230 PF00749 tRNA synthetases class I (E and Q), catalytic domain SH08_RS16255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS16255 PF03466 LysR substrate binding domain SH08_RS16265 PF03825 Nucleoside H+ symporter SH08_RS16270 PF01048 Phosphorylase superfamily SH08_RS16275 PF03502 Nucleoside-specific channel-forming protein, Tsx SH08_RS16280 PF03466 LysR substrate binding domain SH08_RS16280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS16285 PF13593 SBF-like CPA transporter family (DUF4137) SH08_RS16290 PF12843 Putative quorum-sensing-regulated virulence factor SH08_RS16295 PF03120 NAD-dependent DNA ligase OB-fold domain SH08_RS16295 PF00533 BRCA1 C Terminus (BRCT) domain SH08_RS16295 PF12826 Helix-hairpin-helix motif SH08_RS16295 PF01653 NAD-dependent DNA ligase adenylation domain SH08_RS16295 PF03119 NAD-dependent DNA ligase C4 zinc finger domain SH08_RS16300 PF04354 ZipA, C-terminal FtsZ-binding domain SH08_RS16310 PF00291 Pyridoxal-phosphate dependent enzyme SH08_RS16315 PF00381 PTS HPr component phosphorylation site SH08_RS16320 PF02896 PEP-utilising enzyme, TIM barrel domain SH08_RS16320 PF05524 PEP-utilising enzyme, N-terminal SH08_RS16320 PF00391 PEP-utilising enzyme, mobile domain SH08_RS16325 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 SH08_RS16330 PF08543 Phosphomethylpyrimidine kinase SH08_RS16335 PF17263 Family of unknown function (DUF5329) SH08_RS16340 PF05406 WGR domain SH08_RS16345 PF00291 Pyridoxal-phosphate dependent enzyme SH08_RS16350 PF00005 ABC transporter SH08_RS16355 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS16360 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS16375 PF01380 SIS domain SH08_RS16375 PF01418 Helix-turn-helix domain, rpiR family SH08_RS16380 PF01380 SIS domain SH08_RS16385 PF00367 phosphotransferase system, EIIB SH08_RS16385 PF02378 Phosphotransferase system, EIIC SH08_RS16390 PF00144 Beta-lactamase SH08_RS16395 PF04261 Dyp-type peroxidase family SH08_RS16400 PF06572 Protein of unknown function (DUF1131) SH08_RS16405 PF11143 Protein of unknown function (DUF2919) SH08_RS16410 PF00583 Acetyltransferase (GNAT) family SH08_RS16415 PF01520 N-acetylmuramoyl-L-alanine amidase SH08_RS16420 PF01218 Coproporphyrinogen III oxidase SH08_RS16425 PF12833 Helix-turn-helix domain SH08_RS16430 PF00936 BMC domain SH08_RS16430 PF16365 Ethanolamine utilization protein EutK C-terminus SH08_RS16435 PF00936 BMC domain SH08_RS16440 PF05985 Ethanolamine ammonia-lyase light chain (EutC) SH08_RS16445 PF06751 Ethanolamine ammonia lyase large subunit (EutB) SH08_RS16450 PF06277 Ethanolamine utilisation protein EutA SH08_RS16455 PF04346 Ethanolamine utilisation protein, EutH SH08_RS16460 PF00465 Iron-containing alcohol dehydrogenase SH08_RS16470 PF00171 Aldehyde dehydrogenase family SH08_RS16475 PF03319 Ethanolamine utilisation protein EutN/carboxysome SH08_RS16480 PF00936 BMC domain SH08_RS16485 PF01515 Phosphate acetyl/butaryl transferase SH08_RS16490 PF01923 Cobalamin adenosyltransferase SH08_RS16495 PF06249 Ethanolamine utilisation protein EutQ SH08_RS16500 PF10662 Ethanolamine utilisation - propanediol utilisation SH08_RS16505 PF00936 BMC domain SH08_RS16510 PF03949 Malic enzyme, NAD binding domain SH08_RS16510 PF01515 Phosphate acetyl/butaryl transferase SH08_RS16510 PF00390 Malic enzyme, N-terminal domain SH08_RS16515 PF00923 Transaldolase/Fructose-6-phosphate aldolase SH08_RS16520 PF02780 Transketolase, C-terminal domain SH08_RS16520 PF02779 Transketolase, pyrimidine binding domain SH08_RS16520 PF00456 Transketolase, thiamine diphosphate binding domain SH08_RS16525 PF06674 Protein of unknown function (DUF1176) SH08_RS16530 PF00293 NUDIX domain SH08_RS16535 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH08_RS16535 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS16535 PF13247 4Fe-4S dicluster domain SH08_RS16540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS16540 PF07730 Histidine kinase SH08_RS16540 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term SH08_RS16540 PF00672 HAMP domain SH08_RS16545 PF00873 AcrB/AcrD/AcrF family SH08_RS16555 PF03960 ArsC family SH08_RS16560 PF07687 Peptidase dimerisation domain SH08_RS16560 PF01546 Peptidase family M20/M25/M40 SH08_RS16565 PF13980 Uncharacterised protein family (UPF0370) SH08_RS16570 PF02230 Phospholipase/Carboxylesterase SH08_RS16575 PF13718 GNAT acetyltransferase 2 SH08_RS16575 PF08351 Domain of unknown function (DUF1726) SH08_RS16575 PF17176 tRNA-binding domain SH08_RS16575 PF05127 Helicase SH08_RS16580 PF04228 Putative neutral zinc metallopeptidase SH08_RS16585 PF01259 SAICAR synthetase SH08_RS16595 PF06804 NlpB/DapX lipoprotein SH08_RS16600 PF00701 Dihydrodipicolinate synthetase family SH08_RS16605 PF01842 ACT domain SH08_RS16610 PF00578 AhpC/TSA family SH08_RS16615 PF12798 4Fe-4S binding domain SH08_RS16615 PF00037 4Fe-4S binding domain SH08_RS16620 PF00361 Proton-conducting membrane transporter SH08_RS16625 PF00146 NADH dehydrogenase SH08_RS16630 PF00361 Proton-conducting membrane transporter SH08_RS16630 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH08_RS16635 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L SH08_RS16640 PF00361 Proton-conducting membrane transporter SH08_RS16640 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus SH08_RS16645 PF00374 Nickel-dependent hydrogenase SH08_RS16645 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH08_RS16645 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH08_RS16650 PF12838 4Fe-4S dicluster domain SH08_RS16655 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH08_RS16660 PF07450 Formate hydrogenlyase maturation protein HycH SH08_RS16665 PF00158 Sigma-54 interaction domain SH08_RS16665 PF01590 GAF domain SH08_RS16670 PF01226 Formate/nitrite transporter SH08_RS16675 PF01594 AI-2E family transporter SH08_RS16680 PF01435 Peptidase family M48 SH08_RS16685 PF03960 ArsC family SH08_RS16690 PF00308 Bacterial dnaA protein SH08_RS16695 PF00860 Permease family SH08_RS16705 PF02769 AIR synthase related protein, C-terminal domain SH08_RS16705 PF00586 AIR synthase related protein, N-terminal domain SH08_RS16710 PF00551 Formyl transferase SH08_RS16715 PF02503 Polyphosphate kinase middle domain SH08_RS16715 PF13090 Polyphosphate kinase C-terminal domain 2 SH08_RS16715 PF17941 Polyphosphate kinase C-terminal domain 1 SH08_RS16715 PF13089 Polyphosphate kinase N-terminal domain SH08_RS16720 PF02541 Ppx/GppA phosphatase family SH08_RS16725 PF00563 EAL domain SH08_RS16725 PF05231 MASE1 SH08_RS16735 PF11119 Protein of unknown function (DUF2633) SH08_RS16740 PF05433 Glycine zipper 2TM domain SH08_RS16745 PF17358 Family of unknown function (DUF5384) SH08_RS16750 PF00117 Glutamine amidotransferase class-I SH08_RS16750 PF00958 GMP synthase C terminal domain SH08_RS16750 PF02540 NAD synthase SH08_RS16755 PF00571 CBS domain SH08_RS16755 PF00478 IMP dehydrogenase / GMP reductase domain SH08_RS16760 PF02601 Exonuclease VII, large subunit SH08_RS16760 PF13742 OB-fold nucleic acid binding domain SH08_RS16765 PF07191 zinc-ribbons SH08_RS16770 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal SH08_RS16770 PF01926 50S ribosome-binding GTPase SH08_RS16775 PF13360 PQQ-like domain SH08_RS16780 PF09976 Tetratricopeptide repeat-like domain SH08_RS16785 PF13393 Histidyl-tRNA synthetase SH08_RS16785 PF03129 Anticodon binding domain SH08_RS16790 PF04551 GcpE protein SH08_RS16795 PF13464 Domain of unknown function (DUF4115) SH08_RS16800 PF04055 Radical SAM superfamily SH08_RS16805 PF00334 Nucleoside diphosphate kinase SH08_RS16810 PF06832 Penicillin-Binding Protein C-terminus Family SH08_RS16810 PF00905 Penicillin binding protein transpeptidase domain SH08_RS16810 PF00912 Transglycosylase SH08_RS16815 PF07678 A-macroglobulin TED domain SH08_RS16815 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain SH08_RS16815 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain SH08_RS16815 PF07703 Alpha-2-macroglobulin bait region domain SH08_RS16815 PF11974 Bacterial alpha-2-macroglobulin MG3 domain SH08_RS16815 PF17962 Bacterial macroglobulin domain 6 SH08_RS16815 PF01835 MG2 domain SH08_RS16815 PF00207 Alpha-2-macroglobulin family SH08_RS16815 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain SH08_RS16820 PF00581 Rhodanese-like domain SH08_RS16825 PF14581 SseB protein C-terminal domain SH08_RS16825 PF07179 SseB protein N-terminal domain SH08_RS16830 PF00883 Cytosol aminopeptidase family, catalytic domain SH08_RS16830 PF12404 Peptidase SH08_RS16835 PF04384 Iron-sulphur cluster assembly SH08_RS16840 PF00111 2Fe-2S iron-sulfur cluster binding domain SH08_RS16845 PF00012 Hsp70 protein SH08_RS16850 PF07743 HSCB C-terminal oligomerisation domain SH08_RS16855 PF01521 Iron-sulphur cluster biosynthesis SH08_RS16860 PF01592 NifU-like N terminal domain SH08_RS16865 PF00266 Aminotransferase class-V SH08_RS16870 PF02082 Transcriptional regulator SH08_RS16875 PF00588 SpoU rRNA Methylase family SH08_RS16880 PF00459 Inositol monophosphatase family SH08_RS16885 PF12146 Serine aminopeptidase, S33 SH08_RS16890 PF00874 PRD domain SH08_RS16895 PF12832 MFS_1 like family SH08_RS16900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS16900 PF03466 LysR substrate binding domain SH08_RS16905 PF00848 Ring hydroxylating alpha subunit (catalytic domain) SH08_RS16905 PF00355 Rieske [2Fe-2S] domain SH08_RS16910 PF00866 Ring hydroxylating beta subunit SH08_RS16915 PF00355 Rieske [2Fe-2S] domain SH08_RS16920 PF00106 short chain dehydrogenase SH08_RS16925 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS16925 PF14759 Reductase C-terminal SH08_RS16930 PF07681 DoxX SH08_RS16935 PF01263 Aldose 1-epimerase SH08_RS16940 PF00107 Zinc-binding dehydrogenase SH08_RS16940 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS16945 PF02653 Branched-chain amino acid transport system / permease component SH08_RS16950 PF00005 ABC transporter SH08_RS16955 PF13407 Periplasmic binding protein domain SH08_RS16960 PF13181 Tetratricopeptide repeat SH08_RS16960 PF17128 Domain of unknown function (DUF5107) SH08_RS16965 PF00480 ROK family SH08_RS16970 PF00464 Serine hydroxymethyltransferase SH08_RS16975 PF00175 Oxidoreductase NAD-binding domain SH08_RS16975 PF00042 Globin SH08_RS16975 PF00970 Oxidoreductase FAD-binding domain SH08_RS16980 PF00543 Nitrogen regulatory protein P-II SH08_RS16985 PF00158 Sigma-54 interaction domain SH08_RS16985 PF00072 Response regulator receiver domain SH08_RS16990 PF13942 YfhG lipoprotein SH08_RS16995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS16995 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS17000 PF02769 AIR synthase related protein, C-terminal domain SH08_RS17000 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal SH08_RS17000 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain SH08_RS17005 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS17005 PF01464 Transglycosylase SLT domain SH08_RS17010 PF14437 MafB19-like deaminase SH08_RS17020 PF01380 SIS domain SH08_RS17020 PF01418 Helix-turn-helix domain, rpiR family SH08_RS17025 PF12838 4Fe-4S dicluster domain SH08_RS17045 PF01648 4'-phosphopantetheinyl transferase superfamily SH08_RS17050 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ SH08_RS17055 PF11967 Recombination protein O N terminal SH08_RS17055 PF02565 Recombination protein O C terminal SH08_RS17060 PF01926 50S ribosome-binding GTPase SH08_RS17060 PF07650 KH domain SH08_RS17065 PF14622 Ribonuclease-III-like SH08_RS17065 PF00035 Double-stranded RNA binding motif SH08_RS17070 PF10502 Signal peptidase, peptidase S26 SH08_RS17075 PF06421 GTP-binding protein LepA C-terminus SH08_RS17075 PF03144 Elongation factor Tu domain 2 SH08_RS17075 PF00009 Elongation factor Tu GTP binding domain SH08_RS17075 PF00679 Elongation factor G C-terminus SH08_RS17085 PF17188 MucB/RseB C-terminal domain SH08_RS17085 PF03888 MucB/RseB N-terminal domain SH08_RS17090 PF03872 Anti sigma-E protein RseA, N-terminal domain SH08_RS17090 PF03873 Anti sigma-E protein RseA, C-terminal domain SH08_RS17095 PF08281 Sigma-70, region 4 SH08_RS17095 PF04542 Sigma-70 region 2 SH08_RS17105 PF00890 FAD binding domain SH08_RS17105 PF02910 Fumarate reductase flavoprotein C-term SH08_RS17110 PF05175 Methyltransferase small domain SH08_RS17115 PF00271 Helicase conserved C-terminal domain SH08_RS17115 PF00270 DEAD/DEAH box helicase SH08_RS17125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS17125 PF03466 LysR substrate binding domain SH08_RS17130 PF01810 LysE type translocator SH08_RS17135 PF01228 Glycine radical SH08_RS17140 PF03167 Uracil DNA glycosylase superfamily SH08_RS17145 PF00588 SpoU rRNA Methylase family SH08_RS17145 PF08032 RNA 2'-O ribose methyltransferase substrate binding SH08_RS17155 PF00085 Thioredoxin SH08_RS17160 PF03942 DTW domain SH08_RS17165 PF00583 Acetyltransferase (GNAT) family SH08_RS17165 PF13380 CoA binding domain SH08_RS17165 PF13607 Succinyl-CoA ligase like flavodoxin domain SH08_RS17170 PF13091 PLD-like domain SH08_RS17175 PF10043 Predicted periplasmic lipoprotein (DUF2279) SH08_RS17180 PF00083 Sugar (and other) transporter SH08_RS17210 PF17871 AAA lid domain SH08_RS17210 PF02861 Clp amino terminal domain, pathogenicity island component SH08_RS17210 PF00004 ATPase family associated with various cellular activities (AAA) SH08_RS17210 PF10431 C-terminal, D2-small domain, of ClpB protein SH08_RS17210 PF07724 AAA domain (Cdc48 subfamily) SH08_RS17215 PF02578 Multi-copper polyphenol oxidoreductase laccase SH08_RS17220 PF01479 S4 domain SH08_RS17220 PF00849 RNA pseudouridylate synthase SH08_RS17225 PF13525 Outer membrane lipoprotein SH08_RS17235 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH08_RS17240 PF01817 Chorismate mutase type II SH08_RS17240 PF00800 Prephenate dehydratase SH08_RS17245 PF02153 Prephenate dehydrogenase SH08_RS17245 PF01817 Chorismate mutase type II SH08_RS17250 PF00793 DAHP synthetase I family SH08_RS17255 PF10973 Protein of unknown function (DUF2799) SH08_RS17260 PF13689 YfiR/HmsC-like SH08_RS17265 PF17152 Periplasmic sensor domain SH08_RS17265 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS17270 PF00691 OmpA family SH08_RS17275 PF01245 Ribosomal protein L19 SH08_RS17280 PF01746 tRNA (Guanine-1)-methyltransferase SH08_RS17285 PF01782 RimM N-terminal domain SH08_RS17285 PF05239 PRC-barrel domain SH08_RS17290 PF00886 Ribosomal protein S16 SH08_RS17295 PF02978 Signal peptide binding domain SH08_RS17295 PF02881 SRP54-type protein, helical bundle domain SH08_RS17295 PF00448 SRP54-type protein, GTPase domain SH08_RS17300 PF01578 Cytochrome C assembly protein SH08_RS17305 PF03471 Transporter associated domain SH08_RS17305 PF01595 Cyclin M transmembrane N-terminal domain SH08_RS17305 PF00571 CBS domain SH08_RS17310 PF01025 GrpE SH08_RS17320 PF01513 ATP-NAD kinase SH08_RS17325 PF02463 RecF/RecN/SMC N terminal domain SH08_RS17330 PF04355 SmpA / OmlA family SH08_RS17335 PF03658 RnfH family Ubiquitin SH08_RS17340 PF03364 Polyketide cyclase / dehydrase and lipid transport SH08_RS17345 PF01668 SmpB protein SH08_RS17350 PF13356 Arm DNA-binding domain SH08_RS17350 PF00589 Phage integrase family SH08_RS17360 PF05930 Prophage CP4-57 regulatory protein (AlpA) SH08_RS17365 PF13148 Protein of unknown function (DUF3987) SH08_RS17375 PF00271 Helicase conserved C-terminal domain SH08_RS17380 PF14130 Domain of unknown function (DUF4297) SH08_RS17380 PF08878 Domain of unknown function (DUF1837) SH08_RS17385 PF07510 Protein of unknown function (DUF1524) SH08_RS17390 PF15935 RNase LS, bacterial toxin SH08_RS17395 PF15933 Antitoxin to bacterial toxin RNase LS or RnlA SH08_RS17400 PF01926 50S ribosome-binding GTPase SH08_RS17405 PF06067 Domain of unknown function (DUF932) SH08_RS17410 PF08220 DeoR-like helix-turn-helix domain SH08_RS17410 PF13280 WYL domain SH08_RS17445 PF03230 Antirestriction protein SH08_RS17450 PF04002 RadC-like JAB domain SH08_RS17455 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A SH08_RS17460 PF06755 CbtA_toxin of type IV toxin-antitoxin system SH08_RS17465 PF16168 Adhesin of bacterial autotransporter system, probable stalk SH08_RS17465 PF03797 Autotransporter beta-domain SH08_RS17465 PF03212 Pertactin SH08_RS17480 PF17621 Family of unknown function (DUF5508) SH08_RS17485 PF17612 Family of unknown function (DUF5507) SH08_RS17500 PF00128 Alpha amylase, catalytic domain SH08_RS17505 PF00128 Alpha amylase, catalytic domain SH08_RS17510 PF00128 Alpha amylase, catalytic domain SH08_RS17515 PF08943 CsiD SH08_RS17520 PF01266 FAD dependent oxidoreductase SH08_RS17525 PF00171 Aldehyde dehydrogenase family SH08_RS17530 PF00202 Aminotransferase class-III SH08_RS17535 PF00324 Amino acid permease SH08_RS17540 PF07729 FCD domain SH08_RS17540 PF00392 Bacterial regulatory proteins, gntR family SH08_RS17545 PF01476 LysM domain SH08_RS17545 PF04972 BON domain SH08_RS17550 PF01679 Proteolipid membrane potential modulator SH08_RS17555 PF01022 Bacterial regulatory protein, arsR family SH08_RS17560 PF11127 Protein of unknown function (DUF2892) SH08_RS17560 PF00581 Rhodanese-like domain SH08_RS17565 PF00816 H-NS histone family SH08_RS17570 PF06610 L-alanine exporter SH08_RS17575 PF09400 Protein of unknown function (DUF2002) SH08_RS17580 PF05957 Bacterial protein of unknown function (DUF883) SH08_RS17585 PF00462 Glutaredoxin SH08_RS17590 PF07972 NrdI Flavodoxin like SH08_RS17595 PF08343 Ribonucleotide reductase N-terminal SH08_RS17595 PF02867 Ribonucleotide reductase, barrel domain SH08_RS17595 PF00317 Ribonucleotide reductase, all-alpha domain SH08_RS17600 PF00268 Ribonucleotide reductase, small chain SH08_RS17605 PF00571 CBS domain SH08_RS17605 PF00005 ABC transporter SH08_RS17610 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS17615 PF04069 Substrate binding domain of ABC-type glycine betaine transport system SH08_RS17625 PF03591 AzlC protein SH08_RS17630 PF05437 Branched-chain amino acid transport protein (AzlD) SH08_RS17635 PF01047 MarR family SH08_RS17640 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS17640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS17645 PF07690 Major Facilitator Superfamily SH08_RS17650 PF02664 S-Ribosylhomocysteinase (LuxS) SH08_RS17655 PF04262 Glutamate-cysteine ligase SH08_RS17660 PF09335 SNARE associated Golgi protein SH08_RS17665 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS17700 PF02599 Global regulator protein family SH08_RS17705 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain SH08_RS17705 PF01411 tRNA synthetases class II (A) SH08_RS17705 PF02272 DHHA1 domain SH08_RS17715 PF02631 RecX family SH08_RS17730 PF00302 Chloramphenicol acetyltransferase SH08_RS17735 PF02464 Competence-damaged protein SH08_RS17740 PF13406 Transglycosylase SLT domain SH08_RS17745 PF03608 PTS system enzyme II sorbitol-specific factor SH08_RS17750 PF07663 Sorbitol phosphotransferase enzyme II C-terminus SH08_RS17750 PF03612 Sorbitol phosphotransferase enzyme II N-terminus SH08_RS17755 PF03829 PTS system glucitol/sorbitol-specific IIA component SH08_RS17760 PF00106 short chain dehydrogenase SH08_RS17765 PF06923 Glucitol operon activator protein (GutM) SH08_RS17770 PF08220 DeoR-like helix-turn-helix domain SH08_RS17770 PF00455 DeoR C terminal sensor domain SH08_RS17775 PF00571 CBS domain SH08_RS17775 PF01380 SIS domain SH08_RS17780 PF01590 GAF domain SH08_RS17780 PF00158 Sigma-54 interaction domain SH08_RS17785 PF00258 Flavodoxin SH08_RS17785 PF00753 Metallo-beta-lactamase superfamily SH08_RS17785 PF00301 Rubredoxin SH08_RS17790 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS17790 PF18113 Rubredoxin binding C-terminal domain SH08_RS17795 PF07503 HypF finger SH08_RS17795 PF00708 Acylphosphatase SH08_RS17795 PF17788 HypF Kae1-like domain SH08_RS17795 PF01300 Telomere recombination SH08_RS17800 PF13247 4Fe-4S dicluster domain SH08_RS17800 PF12800 4Fe-4S binding domain SH08_RS17805 PF00356 Bacterial regulatory proteins, lacI family SH08_RS17810 PF00367 phosphotransferase system, EIIB SH08_RS17810 PF02378 Phosphotransferase system, EIIC SH08_RS17815 PF00232 Glycosyl hydrolase family 1 SH08_RS17820 PF01750 Hydrogenase maturation protease SH08_RS17825 PF07450 Formate hydrogenlyase maturation protein HycH SH08_RS17830 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH08_RS17835 PF12838 4Fe-4S dicluster domain SH08_RS17840 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit SH08_RS17840 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit SH08_RS17840 PF00374 Nickel-dependent hydrogenase SH08_RS17845 PF00146 NADH dehydrogenase SH08_RS17850 PF00361 Proton-conducting membrane transporter SH08_RS17855 PF13247 4Fe-4S dicluster domain SH08_RS17865 PF11046 Transcriptional repressor of hyc and hyp operons SH08_RS17870 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH08_RS17875 PF02492 CobW/HypB/UreG, nucleotide-binding domain SH08_RS17880 PF01455 HupF/HypC family SH08_RS17885 PF01924 Hydrogenase formation hypA family SH08_RS17890 PF00586 AIR synthase related protein, N-terminal domain SH08_RS17890 PF02769 AIR synthase related protein, C-terminal domain SH08_RS17895 PF00158 Sigma-54 interaction domain SH08_RS17895 PF01590 GAF domain SH08_RS17900 PF11756 Nitrous oxide-stimulated promoter SH08_RS17905 PF05190 MutS family domain IV SH08_RS17905 PF01624 MutS domain I SH08_RS17905 PF00488 MutS domain V SH08_RS17905 PF05188 MutS domain II SH08_RS17905 PF05192 MutS domain III SH08_RS17910 PF00149 Calcineurin-like phosphoesterase SH08_RS17915 PF00455 DeoR C terminal sensor domain SH08_RS17915 PF08220 DeoR-like helix-turn-helix domain SH08_RS17920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH08_RS17920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH08_RS17925 PF07005 Sugar-binding N-terminal domain SH08_RS17925 PF17042 Nucleotide-binding C-terminal domain SH08_RS17930 PF00596 Class II Aldolase and Adducin N-terminal domain SH08_RS17935 PF01261 Xylose isomerase-like TIM barrel SH08_RS17940 PF02447 GntP family permease SH08_RS17945 PF00140 Sigma-70 factor, region 1.2 SH08_RS17945 PF04542 Sigma-70 region 2 SH08_RS17945 PF04539 Sigma-70 region 3 SH08_RS17945 PF04545 Sigma-70, region 4 SH08_RS17950 PF01551 Peptidase family M23 SH08_RS17950 PF01476 LysM domain SH08_RS17960 PF01975 Survival protein SurE SH08_RS17965 PF01142 tRNA pseudouridine synthase D (TruD) SH08_RS17970 PF02542 YgbB family SH08_RS17980 PF04977 Septum formation initiator SH08_RS17985 PF12084 Protein of unknown function (DUF3561) SH08_RS17995 PF00009 Elongation factor Tu GTP binding domain SH08_RS18000 PF01507 Phosphoadenosine phosphosulfate reductase family SH08_RS18005 PF04389 Peptidase family M28 SH08_RS18010 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) SH08_RS18015 PF01867 CRISPR associated protein Cas1 SH08_RS18020 PF08798 CRISPR associated protein SH08_RS18025 PF09704 CRISPR-associated protein (Cas_Cas5) SH08_RS18030 PF09344 CT1975-like protein SH08_RS18035 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) SH08_RS18040 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) SH08_RS18045 PF00271 Helicase conserved C-terminal domain SH08_RS18045 PF18019 HD domain SH08_RS18045 PF00270 DEAD/DEAH box helicase SH08_RS18050 PF01507 Phosphoadenosine phosphosulfate reductase family SH08_RS18055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH08_RS18055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH08_RS18060 PF00667 FAD binding domain SH08_RS18060 PF00175 Oxidoreductase NAD-binding domain SH08_RS18060 PF00258 Flavodoxin SH08_RS18065 PF01242 6-pyruvoyl tetrahydropterin synthase SH08_RS18070 PF01266 FAD dependent oxidoreductase SH08_RS18080 PF04309 Glycerol-3-phosphate responsive antiterminator SH08_RS18085 PF00766 Electron transfer flavoprotein FAD-binding domain SH08_RS18085 PF01012 Electron transfer flavoprotein domain SH08_RS18090 PF01012 Electron transfer flavoprotein domain SH08_RS18095 PF00083 Sugar (and other) transporter SH08_RS18100 PF01565 FAD binding domain SH08_RS18100 PF02913 FAD linked oxidases, C-terminal domain SH08_RS18110 PF07690 Major Facilitator Superfamily SH08_RS18115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH08_RS18115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH08_RS18120 PF04055 Radical SAM superfamily SH08_RS18130 PF04536 TPM domain SH08_RS18135 PF03952 Enolase, N-terminal domain SH08_RS18135 PF00113 Enolase, C-terminal TIM barrel domain SH08_RS18140 PF00117 Glutamine amidotransferase class-I SH08_RS18140 PF06418 CTP synthase N-terminus SH08_RS18145 PF03819 MazG nucleotide pyrophosphohydrolase domain SH08_RS18150 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system SH08_RS18155 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin SH08_RS18160 PF13291 ACT domain SH08_RS18160 PF04607 Region found in RelA / SpoT proteins SH08_RS18160 PF02824 TGS domain SH08_RS18165 PF05958 tRNA (Uracil-5-)-methyltransferase SH08_RS18165 PF01938 TRAM domain SH08_RS18170 PF00672 HAMP domain SH08_RS18170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS18170 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS18170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) SH08_RS18170 PF00072 Response regulator receiver domain SH08_RS18170 PF01627 Hpt domain SH08_RS18175 PF13378 Enolase C-terminal domain-like SH08_RS18180 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH08_RS18180 PF13378 Enolase C-terminal domain-like SH08_RS18185 PF07690 Major Facilitator Superfamily SH08_RS18190 PF00258 Flavodoxin SH08_RS18195 PF00849 RNA pseudouridylate synthase SH08_RS18200 PF04287 tRNA pseudouridine synthase C SH08_RS18210 PF07348 Syd protein (SUKH-2) SH08_RS18215 PF14489 QueF-like protein SH08_RS18215 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term SH08_RS18220 PF11892 Domain of unknown function (DUF3412) SH08_RS18220 PF03641 Possible lysine decarboxylase SH08_RS18220 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases SH08_RS18230 PF03313 Serine dehydratase alpha chain SH08_RS18230 PF03315 Serine dehydratase beta chain SH08_RS18235 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain SH08_RS18235 PF01367 5'-3' exonuclease, C-terminal SAM fold SH08_RS18240 PF00465 Iron-containing alcohol dehydrogenase SH08_RS18245 PF00596 Class II Aldolase and Adducin N-terminal domain SH08_RS18250 PF07690 Major Facilitator Superfamily SH08_RS18255 PF07881 L-fucose isomerase, first N-terminal domain SH08_RS18255 PF07882 L-fucose isomerase, second N-terminal domain SH08_RS18255 PF02952 L-fucose isomerase, C-terminal domain SH08_RS18260 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH08_RS18260 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH08_RS18265 PF05025 RbsD / FucU transport protein family SH08_RS18270 PF08220 DeoR-like helix-turn-helix domain SH08_RS18270 PF00455 DeoR C terminal sensor domain SH08_RS18275 PF18125 RlmM ferredoxin-like domain SH08_RS18275 PF01728 FtsJ-like methyltransferase SH08_RS18280 PF04241 Protein of unknown function (DUF423) SH08_RS18285 PF03466 LysR substrate binding domain SH08_RS18285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS18290 PF06004 Bacterial protein of unknown function (DUF903) SH08_RS18295 PF00266 Aminotransferase class-V SH08_RS18300 PF02657 Fe-S metabolism associated domain SH08_RS18305 PF00899 ThiF family SH08_RS18310 PF03562 MltA specific insert domain SH08_RS18310 PF06725 3D domain SH08_RS18330 PF11741 AMIN domain SH08_RS18330 PF01520 N-acetylmuramoyl-L-alanine amidase SH08_RS18335 PF00583 Acetyltransferase (GNAT) family SH08_RS18335 PF00696 Amino acid kinase family SH08_RS18345 PF13361 UvrD-like helicase C-terminal domain SH08_RS18345 PF00580 UvrD/REP helicase N-terminal domain SH08_RS18345 PF12705 PD-(D/E)XK nuclease superfamily SH08_RS18350 PF00675 Insulinase (Peptidase family M16) SH08_RS18350 PF05193 Peptidase M16 inactive domain SH08_RS18350 PF16187 Middle or third domain of peptidase_M16 SH08_RS18355 PF17946 RecC C-terminal domain SH08_RS18360 PF12528 Type II secretion prepilin peptidase dependent protein C SH08_RS18360 PF07963 Prokaryotic N-terminal methylation motif SH08_RS18365 PF10713 Protein of unknown function (DUF2509) SH08_RS18370 PF07963 Prokaryotic N-terminal methylation motif SH08_RS18375 PF07963 Prokaryotic N-terminal methylation motif SH08_RS18380 PF00303 Thymidylate synthase SH08_RS18385 PF01790 Prolipoprotein diacylglyceryl transferase SH08_RS18390 PF02896 PEP-utilising enzyme, TIM barrel domain SH08_RS18390 PF00391 PEP-utilising enzyme, mobile domain SH08_RS18390 PF05524 PEP-utilising enzyme, N-terminal SH08_RS18390 PF01590 GAF domain SH08_RS18395 PF00293 NUDIX domain SH08_RS18410 PF02976 DNA mismatch repair enzyme MutH SH08_RS18415 PF03741 Integral membrane protein TerC family SH08_RS18420 PF06004 Bacterial protein of unknown function (DUF903) SH08_RS18425 PF00248 Aldo/keto reductase family SH08_RS18430 PF07690 Major Facilitator Superfamily SH08_RS18435 PF01553 Acyltransferase SH08_RS18435 PF00501 AMP-binding enzyme SH08_RS18440 PF00356 Bacterial regulatory proteins, lacI family SH08_RS18445 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH08_RS18445 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain SH08_RS18450 PF03466 LysR substrate binding domain SH08_RS18450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS18455 PF01177 Asp/Glu/Hydantoin racemase SH08_RS18460 PF00083 Sugar (and other) transporter SH08_RS18470 PF04962 KduI/IolB family SH08_RS18475 PF00108 Thiolase, N-terminal domain SH08_RS18475 PF02803 Thiolase, C-terminal domain SH08_RS18480 PF03222 Tryptophan/tyrosine permease family SH08_RS18485 PF00196 Bacterial regulatory proteins, luxR family SH08_RS18490 PF00486 Transcriptional regulatory protein, C terminal SH08_RS18510 PF07720 Tetratricopeptide repeat SH08_RS18515 PF00486 Transcriptional regulatory protein, C terminal SH08_RS18525 PF01464 Transglycosylase SLT domain SH08_RS18530 PF00196 Bacterial regulatory proteins, luxR family SH08_RS18530 PF00072 Response regulator receiver domain SH08_RS18535 PF00072 Response regulator receiver domain SH08_RS18535 PF00196 Bacterial regulatory proteins, luxR family SH08_RS18550 PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) SH08_RS18555 PF00665 Integrase core domain SH08_RS18555 PF13276 HTH-like domain SH08_RS18560 PF01527 Transposase SH08_RS18580 PF01476 LysM domain SH08_RS18580 PF01551 Peptidase family M23 SH08_RS18585 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH08_RS18585 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH08_RS18590 PF03450 CO dehydrogenase flavoprotein C-terminal domain SH08_RS18590 PF00941 FAD binding domain in molybdopterin dehydrogenase SH08_RS18595 PF01799 [2Fe-2S] binding domain SH08_RS18595 PF00111 2Fe-2S iron-sulfur cluster binding domain SH08_RS18600 PF00158 Sigma-54 interaction domain SH08_RS18600 PF13188 PAS domain SH08_RS18600 PF02954 Bacterial regulatory protein, Fis family SH08_RS18605 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain SH08_RS18605 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain SH08_RS18610 PF00291 Pyridoxal-phosphate dependent enzyme SH08_RS18615 PF07687 Peptidase dimerisation domain SH08_RS18615 PF01546 Peptidase family M20/M25/M40 SH08_RS18620 PF01979 Amidohydrolase family SH08_RS18625 PF00696 Amino acid kinase family SH08_RS18630 PF13478 XdhC Rossmann domain SH08_RS18630 PF02625 XdhC and CoxI family SH08_RS18640 PF12804 MobA-like NTP transferase domain SH08_RS18645 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH08_RS18645 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS18650 PF01979 Amidohydrolase family SH08_RS18655 PF00941 FAD binding domain in molybdopterin dehydrogenase SH08_RS18660 PF01799 [2Fe-2S] binding domain SH08_RS18660 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SH08_RS18660 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase SH08_RS18665 PF00860 Permease family SH08_RS18670 PF01979 Amidohydrolase family SH08_RS18675 PF00860 Permease family SH08_RS18680 PF13247 4Fe-4S dicluster domain SH08_RS18685 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS18685 PF13247 4Fe-4S dicluster domain SH08_RS18685 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster SH08_RS18695 PF00860 Permease family SH08_RS18705 PF00293 NUDIX domain SH08_RS18710 PF01336 OB-fold nucleic acid binding domain SH08_RS18710 PF00152 tRNA synthetases class II (D, K and N) SH08_RS18715 PF03462 PCRF domain SH08_RS18715 PF00472 RF-1 domain SH08_RS18720 PF17768 RecJ OB domain SH08_RS18720 PF02272 DHHA1 domain SH08_RS18720 PF01368 DHH family SH08_RS18725 PF10411 Disulfide bond isomerase protein N-terminus SH08_RS18725 PF13098 Thioredoxin-like domain SH08_RS18730 PF00589 Phage integrase family SH08_RS18730 PF02899 Phage integrase, N-terminal SAM-like domain SH08_RS18735 PF00258 Flavodoxin SH08_RS18740 PF07254 Membrane-bound toxin component of toxin-antitoxin system SH08_RS18745 PF03937 Flavinator of succinate dehydrogenase SH08_RS18750 PF01571 Aminomethyltransferase folate-binding domain SH08_RS18755 PF03006 Haemolysin-III related SH08_RS18760 PF04266 ASCH domain SH08_RS18765 PF00232 Glycosyl hydrolase family 1 SH08_RS18775 PF02347 Glycine cleavage system P-protein SH08_RS18780 PF01597 Glycine cleavage H-protein SH08_RS18785 PF08669 Glycine cleavage T-protein C-terminal barrel domain SH08_RS18785 PF01571 Aminomethyltransferase folate-binding domain SH08_RS18790 PF01494 FAD binding domain SH08_RS18795 PF01494 FAD binding domain SH08_RS18800 PF05195 Aminopeptidase P, N-terminal domain SH08_RS18800 PF00557 Metallopeptidase family M24 SH08_RS18805 PF03695 Uncharacterised protein family (UPF0149) SH08_RS18810 PF05164 Cell division protein ZapA SH08_RS18815 PF01812 5-formyltetrahydrofolate cyclo-ligase family SH08_RS18820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH08_RS18820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH08_RS18820 PF01842 ACT domain SH08_RS18825 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) SH08_RS18830 PF03466 LysR substrate binding domain SH08_RS18835 PF03466 LysR substrate binding domain SH08_RS18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS18840 PF01642 Methylmalonyl-CoA mutase SH08_RS18840 PF02310 B12 binding domain SH08_RS18850 PF00378 Enoyl-CoA hydratase/isomerase SH08_RS18855 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain SH08_RS18855 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain SH08_RS18860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS18860 PF03466 LysR substrate binding domain SH08_RS18865 PF04402 Protein of unknown function (DUF541) SH08_RS18870 PF01810 LysE type translocator SH08_RS18875 PF05552 Conserved TM helix SH08_RS18875 PF00924 Mechanosensitive ion channel SH08_RS18880 PF01116 Fructose-bisphosphate aldolase class-II SH08_RS18885 PF00162 Phosphoglycerate kinase SH08_RS18890 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain SH08_RS18890 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SH08_RS18900 PF05068 Mannitol repressor SH08_RS18905 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded SH08_RS18910 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS18910 PF00107 Zinc-binding dehydrogenase SH08_RS18915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit SH08_RS18915 PF02378 Phosphotransferase system, EIIC SH08_RS18920 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS18925 PF00456 Transketolase, thiamine diphosphate binding domain SH08_RS18925 PF02779 Transketolase, pyrimidine binding domain SH08_RS18925 PF02780 Transketolase, C-terminal domain SH08_RS18930 PF01435 Peptidase family M48 SH08_RS18935 PF00491 Arginase family SH08_RS18940 PF17810 Arginine decarboxylase helical bundle domain SH08_RS18940 PF17944 Arginine decarboxylase C-terminal helical extension SH08_RS18940 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain SH08_RS18945 PF11036 Virulence promoting factor SH08_RS18950 PF17430 Uncharacterized YqgC-like SH08_RS18960 PF02773 S-adenosylmethionine synthetase, C-terminal domain SH08_RS18960 PF02772 S-adenosylmethionine synthetase, central domain SH08_RS18960 PF00438 S-adenosylmethionine synthetase, N-terminal domain SH08_RS18970 PF10263 SprT-like family SH08_RS18970 PF17283 SprT-like zinc ribbon domain SH08_RS18975 PF04231 Endonuclease I SH08_RS18980 PF04452 RNA methyltransferase SH08_RS18985 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain SH08_RS18985 PF02951 Prokaryotic glutathione synthetase, N-terminal domain SH08_RS18990 PF02622 Uncharacterized ACR, COG1678 SH08_RS18995 PF03652 Holliday junction resolvase SH08_RS19000 PF00437 Type II/IV secretion system protein SH08_RS19005 PF01168 Alanine racemase, N-terminal domain SH08_RS19010 PF02325 YGGT family SH08_RS19015 PF02594 Uncharacterised ACR, YggU family COG1872 SH08_RS19020 PF01725 Ham1 family SH08_RS19025 PF06969 HemN C-terminal domain SH08_RS19025 PF04055 Radical SAM superfamily SH08_RS19030 PF06717 Protein of unknown function (DUF1202) SH08_RS19035 PF17763 Glutaminase/Asparaginase C-terminal domain SH08_RS19035 PF00710 Asparaginase, N-terminal SH08_RS19040 PF11101 Protein of unknown function (DUF2884) SH08_RS19050 PF04320 Protein with unknown function (DUF469) SH08_RS19055 PF02390 Putative methyltransferase SH08_RS19060 PF14815 NUDIX domain SH08_RS19060 PF00730 HhH-GPD superfamily base excision DNA repair protein SH08_RS19060 PF00633 Helix-hairpin-helix motif SH08_RS19060 PF10576 Iron-sulfur binding domain of endonuclease III SH08_RS19065 PF04362 Bacterial Fe(2+) trafficking SH08_RS19070 PF01464 Transglycosylase SLT domain SH08_RS19070 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain SH08_RS19075 PF03825 Nucleoside H+ symporter SH08_RS19080 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain SH08_RS19080 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain SH08_RS19080 PF01276 Orn/Lys/Arg decarboxylase, major domain SH08_RS19085 PF04474 Protein of unknown function (DUF554) SH08_RS19095 PF04612 Type II secretion system (T2SS), protein M SH08_RS19100 PF12693 GspL periplasmic domain SH08_RS19105 PF11356 Type II secretion system protein C SH08_RS19110 PF16549 Type II secretion system (T2SS) pilotin, S protein SH08_RS19115 PF06750 Bacterial Peptidase A24 N-terminal domain SH08_RS19115 PF01478 Type IV leader peptidase family SH08_RS19120 PF17291 N-terminal domain of M60-like peptidases SH08_RS19120 PF13402 Peptidase M60, enhancin and enhancin-like SH08_RS19120 PF13322 Domain of unknown function (DUF4092) SH08_RS19130 PF02652 L-lactate permease SH08_RS19135 PF01274 Malate synthase SH08_RS19140 PF03928 Haem-degrading SH08_RS19145 PF13183 4Fe-4S dicluster domain SH08_RS19145 PF02754 Cysteine-rich domain SH08_RS19150 PF01565 FAD binding domain SH08_RS19155 PF01565 FAD binding domain SH08_RS19155 PF02913 FAD linked oxidases, C-terminal domain SH08_RS19160 PF00392 Bacterial regulatory proteins, gntR family SH08_RS19160 PF07729 FCD domain SH08_RS19170 PF01609 Transposase DDE domain SH08_RS19170 PF05598 Transposase domain (DUF772) SH08_RS19175 PF01943 Polysaccharide biosynthesis protein SH08_RS19195 PF01384 Phosphate transporter family SH08_RS19200 PF03738 Glutathionylspermidine synthase preATP-grasp SH08_RS19200 PF05257 CHAP domain SH08_RS19205 PF02798 Glutathione S-transferase, N-terminal domain SH08_RS19210 PF01455 HupF/HypC family SH08_RS19215 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA SH08_RS19220 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE SH08_RS19225 PF01750 Hydrogenase maturation protease SH08_RS19230 PF00374 Nickel-dependent hydrogenase SH08_RS19235 PF03916 Polysulphide reductase, NrfD SH08_RS19240 PF13247 4Fe-4S dicluster domain SH08_RS19245 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit SH08_RS19245 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal SH08_RS19255 PF11115 Protein of unknown function (DUF2623) SH08_RS19265 PF00248 Aldo/keto reductase family SH08_RS19270 PF03350 Uncharacterized protein family, UPF0114 SH08_RS19280 PF02472 Biopolymer transport protein ExbD/TolR SH08_RS19285 PF01618 MotA/TolQ/ExbB proton channel family SH08_RS19295 PF01053 Cys/Met metabolism PLP-dependent enzyme SH08_RS19300 PF09335 SNARE associated Golgi protein SH08_RS19305 PF12833 Helix-turn-helix domain SH08_RS19305 PF06719 AraC-type transcriptional regulator N-terminus SH08_RS19315 PF00465 Iron-containing alcohol dehydrogenase SH08_RS19320 PF00248 Aldo/keto reductase family SH08_RS19325 PF12883 Protein of unknown function (DUF3828) SH08_RS19330 PF04728 Lipoprotein leucine-zipper SH08_RS19335 PF08497 Radical SAM N-terminal SH08_RS19335 PF04055 Radical SAM superfamily SH08_RS19335 PF11842 Domain of unknown function (DUF3362) SH08_RS19340 PF07732 Multicopper oxidase SH08_RS19340 PF07731 Multicopper oxidase SH08_RS19340 PF00394 Multicopper oxidase SH08_RS19345 PF01553 Acyltransferase SH08_RS19355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS19360 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA SH08_RS19365 PF15723 Motility quorum-sensing regulator, toxin of MqsA SH08_RS19370 PF06445 GyrI-like small molecule binding domain SH08_RS19375 PF04076 Bacterial OB fold (BOF) protein SH08_RS19380 PF00486 Transcriptional regulatory protein, C terminal SH08_RS19380 PF00072 Response regulator receiver domain SH08_RS19385 PF08521 Two-component sensor kinase N-terminal SH08_RS19385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS19385 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS19390 PF10840 Protein of unknown function (DUF2645) SH08_RS19395 PF02525 Flavodoxin-like fold SH08_RS19400 PF03992 Antibiotic biosynthesis monooxygenase SH08_RS19405 PF01751 Toprim domain SH08_RS19405 PF00204 DNA gyrase B SH08_RS19405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS19405 PF00986 DNA gyrase B subunit, carboxyl terminus SH08_RS19410 PF05728 Uncharacterised protein family (UPF0227) SH08_RS19415 PF00149 Calcineurin-like phosphoesterase SH08_RS19420 PF06853 Protein of unknown function (DUF1249) SH08_RS19425 PF00293 NUDIX domain SH08_RS19430 PF02321 Outer membrane efflux protein SH08_RS19440 PF06693 Protein of unknown function (DUF1190) SH08_RS19445 PF03738 Glutathionylspermidine synthase preATP-grasp SH08_RS19450 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase SH08_RS19455 PF02535 ZIP Zinc transporter SH08_RS19465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase SH08_RS19470 PF04380 Membrane fusogenic activity SH08_RS19475 PF00419 Fimbrial protein SH08_RS19480 PF01527 Transposase SH08_RS19485 PF00665 Integrase core domain SH08_RS19485 PF13276 HTH-like domain SH08_RS19490 PF13953 PapC C-terminal domain SH08_RS19490 PF13954 PapC N-terminal domain SH08_RS19490 PF00577 Outer membrane usher protein SH08_RS19495 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS19495 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS19505 PF08971 Glycogen synthesis protein SH08_RS19510 PF07290 Protein of unknown function (DUF1449) SH08_RS19515 PF01145 SPFH domain / Band 7 family SH08_RS19515 PF15975 Flotillin SH08_RS19530 PF01467 Cytidylyltransferase-like SH08_RS19530 PF00294 pfkB family carbohydrate kinase SH08_RS19535 PF08335 GlnD PII-uridylyltransferase SH08_RS19535 PF03710 Glutamate-ammonia ligase adenylyltransferase SH08_RS19540 PF01928 CYTH domain SH08_RS19550 PF08239 Bacterial SH3 domain SH08_RS19555 PF01966 HD domain SH08_RS19555 PF12627 Probable RNA and SrmB- binding site of polymerase A SH08_RS19555 PF01743 Poly A polymerase head domain SH08_RS19560 PF02673 Bacitracin resistance protein BacA SH08_RS19565 PF02152 Dihydroneopterin aldolase SH08_RS19570 PF02660 Glycerol-3-phosphate acyltransferase SH08_RS19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS19575 PF03466 LysR substrate binding domain SH08_RS19580 PF05681 Fumarate hydratase (Fumerase) SH08_RS19590 PF00939 Sodium:sulfate symporter transmembrane region SH08_RS19595 PF00814 Glycoprotease family SH08_RS19600 PF01165 Ribosomal protein S21 SH08_RS19610 PF04545 Sigma-70, region 4 SH08_RS19610 PF04542 Sigma-70 region 2 SH08_RS19610 PF00140 Sigma-70 factor, region 1.2 SH08_RS19610 PF03979 Sigma-70 factor, region 1.1 SH08_RS19610 PF04546 Sigma-70, non-essential region SH08_RS19610 PF04539 Sigma-70 region 3 SH08_RS19615 PF03167 Uracil DNA glycosylase superfamily SH08_RS19625 PF04954 Siderophore-interacting protein SH08_RS19625 PF08021 Siderophore-interacting FAD-binding domain SH08_RS19630 PF03551 Transcriptional regulator PadR-like family SH08_RS19635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain SH08_RS19635 PF08447 PAS fold SH08_RS19640 PF00202 Aminotransferase class-III SH08_RS19645 PF01588 Putative tRNA binding domain SH08_RS19650 PF00356 Bacterial regulatory proteins, lacI family SH08_RS19655 PF00703 Glycosyl hydrolases family 2 SH08_RS19655 PF02929 Beta galactosidase small chain SH08_RS19655 PF16353 Domain of unknown function(DUF4981) SH08_RS19655 PF02836 Glycosyl hydrolases family 2, TIM barrel domain SH08_RS19655 PF02837 Glycosyl hydrolases family 2, sugar binding domain SH08_RS19660 PF04074 YhcH/YjgK/YiaL SH08_RS19665 PF13520 Amino acid permease SH08_RS19675 PF01204 Trehalase SH08_RS19680 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS19680 PF00724 NADH:flavin oxidoreductase / NADH oxidase family SH08_RS19685 PF01381 Helix-turn-helix SH08_RS19690 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system SH08_RS19700 PF05175 Methyltransferase small domain SH08_RS19705 PF01863 Protein of unknown function DUF45 SH08_RS19710 PF02698 DUF218 domain SH08_RS19715 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH08_RS19720 PF03741 Integral membrane protein TerC family SH08_RS19725 PF00375 Sodium:dicarboxylate symporter family SH08_RS19730 PF10688 Bacterial inner membrane protein SH08_RS19735 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH08_RS19735 PF08666 SAF domain SH08_RS19740 PF02614 Glucuronate isomerase SH08_RS19745 PF07690 Major Facilitator Superfamily SH08_RS19750 PF00392 Bacterial regulatory proteins, gntR family SH08_RS19750 PF07729 FCD domain SH08_RS19755 PF09335 SNARE associated Golgi protein SH08_RS19760 PF13721 SecD export protein N-terminal TM region SH08_RS19765 PF06476 Protein of unknown function (DUF1090) SH08_RS19770 PF05957 Bacterial protein of unknown function (DUF883) SH08_RS19775 PF07332 Putative Actinobacterial Holin-X, holin superfamily III SH08_RS19780 PF13997 YqjK-like protein SH08_RS19785 PF07681 DoxX SH08_RS19790 PF13409 Glutathione S-transferase, N-terminal domain SH08_RS19795 PF05656 Protein of unknown function (DUF805) SH08_RS19800 PF05656 Protein of unknown function (DUF805) SH08_RS19805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS19805 PF03466 LysR substrate binding domain SH08_RS19810 PF17954 Quercetinase C-terminal cupin domain SH08_RS19810 PF02678 Pirin SH08_RS19820 PF03313 Serine dehydratase alpha chain SH08_RS19830 PF03315 Serine dehydratase beta chain SH08_RS19830 PF03313 Serine dehydratase alpha chain SH08_RS19835 PF01042 Endoribonuclease L-PSP SH08_RS19840 PF02901 Pyruvate formate lyase-like SH08_RS19840 PF01228 Glycine radical SH08_RS19850 PF05598 Transposase domain (DUF772) SH08_RS19850 PF01609 Transposase DDE domain SH08_RS19855 PF00871 Acetokinase family SH08_RS19860 PF03222 Tryptophan/tyrosine permease family SH08_RS19865 PF00291 Pyridoxal-phosphate dependent enzyme SH08_RS19870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS19870 PF03466 LysR substrate binding domain SH08_RS19890 PF02595 Glycerate kinase family SH08_RS19895 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase SH08_RS19895 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase SH08_RS19900 PF03328 HpcH/HpaI aldolase/citrate lyase family SH08_RS19905 PF07690 Major Facilitator Superfamily SH08_RS19915 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus SH08_RS19915 PF08666 SAF domain SH08_RS19920 PF15937 prlF antitoxin for toxin YhaV_toxin SH08_RS19925 PF11663 Toxin with endonuclease activity, of toxin-antitoxin system SH08_RS19930 PF08220 DeoR-like helix-turn-helix domain SH08_RS19930 PF00455 DeoR C terminal sensor domain SH08_RS19935 PF08013 Tagatose 6 phosphate kinase SH08_RS19940 PF03830 PTS system sorbose subfamily IIB component SH08_RS19945 PF03609 PTS system sorbose-specific iic component SH08_RS19950 PF01979 Amidohydrolase family SH08_RS19955 PF01380 SIS domain SH08_RS19960 PF01116 Fructose-bisphosphate aldolase class-II SH08_RS19965 PF03830 PTS system sorbose subfamily IIB component SH08_RS19970 PF03609 PTS system sorbose-specific iic component SH08_RS19975 PF03613 PTS system mannose/fructose/sorbose family IID component SH08_RS19980 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SH08_RS19985 PF00419 Fimbrial protein SH08_RS19990 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain SH08_RS19990 PF02753 Pili assembly chaperone PapD, C-terminal domain SH08_RS19995 PF00577 Outer membrane usher protein SH08_RS19995 PF13954 PapC N-terminal domain SH08_RS19995 PF13953 PapC C-terminal domain SH08_RS20000 PF00419 Fimbrial protein SH08_RS20005 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH08_RS20010 PF04348 LppC putative lipoprotein SH08_RS20015 PF02021 Uncharacterised protein family UPF0102 SH08_RS20020 PF13580 SIS domain SH08_RS20025 PF04972 BON domain SH08_RS20030 PF03773 Predicted permease SH08_RS20035 PF13460 NAD(P)H-binding SH08_RS20040 PF01965 DJ-1/PfpI family SH08_RS20050 PF01541 GIY-YIG catalytic domain SH08_RS20055 PF13508 Acetyltransferase (GNAT) domain SH08_RS20060 PF02036 SCP-2 sterol transfer family SH08_RS20065 PF01136 Peptidase family U32 SH08_RS20070 PF01136 Peptidase family U32 SH08_RS20075 PF00296 Luciferase-like monooxygenase SH08_RS20080 PF03222 Tryptophan/tyrosine permease family SH08_RS20090 PF03880 DbpA RNA binding domain SH08_RS20090 PF00270 DEAD/DEAH box helicase SH08_RS20090 PF00271 Helicase conserved C-terminal domain SH08_RS20090 PF12343 Cold shock protein DEAD box A SH08_RS20095 PF13181 Tetratricopeptide repeat SH08_RS20095 PF07719 Tetratricopeptide repeat SH08_RS20100 PF03725 3' exoribonuclease family, domain 2 SH08_RS20100 PF00575 S1 RNA binding domain SH08_RS20100 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain SH08_RS20100 PF01138 3' exoribonuclease family, domain 1 SH08_RS20100 PF00013 KH domain SH08_RS20105 PF00312 Ribosomal protein S15 SH08_RS20110 PF09157 Pseudouridine synthase II TruB, C-terminal SH08_RS20110 PF01509 TruB family pseudouridylate synthase (N terminal domain) SH08_RS20110 PF16198 tRNA pseudouridylate synthase B C-terminal domain SH08_RS20115 PF02033 Ribosome-binding factor A SH08_RS20120 PF08364 Bacterial translation initiation factor IF-2 associated region SH08_RS20120 PF04760 Translation initiation factor IF-2, N-terminal region SH08_RS20120 PF00009 Elongation factor Tu GTP binding domain SH08_RS20120 PF11987 Translation-initiation factor 2 SH08_RS20125 PF13184 NusA-like KH domain SH08_RS20125 PF08529 NusA N-terminal domain SH08_RS20125 PF00575 S1 RNA binding domain SH08_RS20130 PF17384 RimP C-terminal SH3 domain SH08_RS20130 PF02576 RimP N-terminal domain SH08_RS20140 PF00764 Arginosuccinate synthase SH08_RS20145 PF00884 Sulfatase SH08_RS20155 PF03840 Preprotein translocase SecG subunit SH08_RS20160 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III SH08_RS20160 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I SH08_RS20160 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain SH08_RS20160 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II SH08_RS20165 PF00809 Pterin binding enzyme SH08_RS20170 PF17862 AAA+ lid domain SH08_RS20170 PF00004 ATPase family associated with various cellular activities (AAA) SH08_RS20170 PF01434 Peptidase family M41 SH08_RS20170 PF06480 FtsH Extracellular SH08_RS20175 PF01728 FtsJ-like methyltransferase SH08_RS20180 PF01985 CRS1 / YhbY (CRM) domain SH08_RS20185 PF03449 Transcription elongation factor, N-terminal SH08_RS20185 PF01272 Transcription elongation factor, GreA/GreB, C-term SH08_RS20190 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family SH08_RS20195 PF01926 50S ribosome-binding GTPase SH08_RS20195 PF01018 GTP1/OBG SH08_RS20200 PF00892 EamA-like transporter family SH08_RS20205 PF01016 Ribosomal L27 protein SH08_RS20210 PF00829 Ribosomal prokaryotic L21 protein SH08_RS20215 PF00348 Polyprenyl synthetase SH08_RS20220 PF13693 Winged helix-turn-helix DNA-binding SH08_RS20225 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) SH08_RS20230 PF01722 BolA-like protein SH08_RS20235 PF13466 STAS domain SH08_RS20240 PF05494 MlaC protein SH08_RS20245 PF02470 MlaD protein SH08_RS20250 PF02405 Permease MlaE SH08_RS20255 PF00005 ABC transporter SH08_RS20260 PF01699 Sodium/calcium exchanger protein SH08_RS20265 PF01380 SIS domain SH08_RS20265 PF00571 CBS domain SH08_RS20275 PF06835 Lipopolysaccharide-assembly, LptC-related SH08_RS20280 PF03968 OstA-like protein SH08_RS20285 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH08_RS20285 PF00005 ABC transporter SH08_RS20290 PF04963 Sigma-54 factor, core binding domain SH08_RS20290 PF00309 Sigma-54 factor, Activator interacting domain (AID) SH08_RS20290 PF04552 Sigma-54, DNA binding domain SH08_RS20295 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein SH08_RS20300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 SH08_RS20305 PF03668 P-loop ATPase protein family SH08_RS20310 PF00381 PTS HPr component phosphorylation site SH08_RS20315 PF10707 PhoP regulatory network protein YrbL SH08_RS20320 PF01609 Transposase DDE domain SH08_RS20320 PF05598 Transposase domain (DUF772) SH08_RS20330 PF06551 Protein of unknown function (DUF1120) SH08_RS20335 PF17761 DUF1016 N-terminal domain SH08_RS20335 PF06250 YhcG PDDEXK nuclease domain SH08_RS20340 PF04074 YhcH/YjgK/YiaL SH08_RS20345 PF00480 ROK family SH08_RS20350 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase SH08_RS20355 PF07690 Major Facilitator Superfamily SH08_RS20360 PF00701 Dihydrodipicolinate synthetase family SH08_RS20365 PF07729 FCD domain SH08_RS20365 PF00392 Bacterial regulatory proteins, gntR family SH08_RS20370 PF03606 C4-dicarboxylate anaerobic carrier SH08_RS20375 PF04386 Stringent starvation protein B SH08_RS20380 PF02798 Glutathione S-transferase, N-terminal domain SH08_RS20380 PF00043 Glutathione S-transferase, C-terminal domain SH08_RS20385 PF00380 Ribosomal protein S9/S16 SH08_RS20390 PF00572 Ribosomal protein L13 SH08_RS20395 PF03969 AFG1-like ATPase SH08_RS20400 PF06295 Protein of unknown function (DUF1043) SH08_RS20405 PF13180 PDZ domain SH08_RS20405 PF00595 PDZ domain SH08_RS20410 PF13180 PDZ domain SH08_RS20415 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain SH08_RS20415 PF00056 lactate/malate dehydrogenase, NAD binding domain SH08_RS20420 PF01316 Arginine repressor, DNA binding domain SH08_RS20420 PF02863 Arginine repressor, C-terminal domain SH08_RS20425 PF07338 Protein of unknown function (DUF1471) SH08_RS20430 PF01337 Barstar (barnase inhibitor) SH08_RS20435 PF04632 Fusaric acid resistance protein family SH08_RS20440 PF13533 Biotin-lipoyl like SH08_RS20445 PF07869 Protein of unknown function (DUF1656) SH08_RS20450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS20450 PF03466 LysR substrate binding domain SH08_RS20455 PF01523 Putative modulator of DNA gyrase SH08_RS20460 PF13502 AsmA-like C-terminal region SH08_RS20460 PF13116 Protein of unknown function SH08_RS20465 PF00575 S1 RNA binding domain SH08_RS20465 PF10150 Ribonuclease E/G family SH08_RS20470 PF02545 Maf-like protein SH08_RS20475 PF04093 rod shape-determining protein MreD SH08_RS20480 PF04085 rod shape-determining protein MreC SH08_RS20495 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS20495 PF00563 EAL domain SH08_RS20495 PF17157 Gammaproteobacterial periplasmic sensor domain SH08_RS20500 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS20500 PF00107 Zinc-binding dehydrogenase SH08_RS20515 PF01794 Ferric reductase like transmembrane component SH08_RS20520 PF00364 Biotin-requiring enzyme SH08_RS20525 PF02785 Biotin carboxylase C-terminal domain SH08_RS20525 PF00289 Biotin carboxylase, N-terminal domain SH08_RS20525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain SH08_RS20530 PF06196 Protein of unknown function (DUF997) SH08_RS20535 PF00474 Sodium:solute symporter family SH08_RS20545 PF01207 Dihydrouridine synthase (Dus) SH08_RS20550 PF02954 Bacterial regulatory protein, Fis family SH08_RS20555 PF01555 DNA methylase SH08_RS20560 PF10831 Protein of unknown function (DUF2556) SH08_RS20565 PF08361 MAATS-type transcriptional repressor, C-terminal region SH08_RS20565 PF00440 Bacterial regulatory proteins, tetR family SH08_RS20570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS20570 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS20575 PF00873 AcrB/AcrD/AcrF family SH08_RS20590 PF00497 Bacterial extracellular solute-binding proteins, family 3 SH08_RS20595 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS20600 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS20605 PF00005 ABC transporter SH08_RS20645 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS20650 PF07369 Protein of unknown function (DUF1488) SH08_RS20655 PF08501 Shikimate dehydrogenase substrate binding domain SH08_RS20655 PF01488 Shikimate / quinate 5-dehydrogenase SH08_RS20655 PF18317 Shikimate 5'-dehydrogenase C-terminal domain SH08_RS20660 PF01300 Telomere recombination SH08_RS20665 PF01396 Topoisomerase DNA binding C4 zinc finger SH08_RS20670 PF04361 Protein of unknown function (DUF494) SH08_RS20675 PF02481 DNA recombination-mediator protein A SH08_RS20675 PF17782 DprA winged helix domain SH08_RS20680 PF01327 Polypeptide deformylase SH08_RS20685 PF02911 Formyl transferase, C-terminal domain SH08_RS20685 PF00551 Formyl transferase SH08_RS20690 PF01189 16S rRNA methyltransferase RsmB/F SH08_RS20690 PF01029 NusB family SH08_RS20695 PF02080 TrkA-C domain SH08_RS20695 PF02254 TrkA-N domain SH08_RS20700 PF01741 Large-conductance mechanosensitive channel, MscL SH08_RS20705 PF03889 Alternative ribosome-rescue factor A SH08_RS20710 PF13411 MerR HTH family regulatory protein SH08_RS20715 PF09350 Domain of unknown function (DUF1992) SH08_RS20720 PF01196 Ribosomal protein L17 SH08_RS20725 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain SH08_RS20725 PF01000 RNA polymerase Rpb3/RpoA insert domain SH08_RS20725 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain SH08_RS20730 PF00163 Ribosomal protein S4/S9 N-terminal domain SH08_RS20730 PF01479 S4 domain SH08_RS20735 PF00411 Ribosomal protein S11 SH08_RS20740 PF00416 Ribosomal protein S13/S18 SH08_RS20745 PF00444 Ribosomal protein L36 SH08_RS20750 PF00344 SecY translocase SH08_RS20755 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SH08_RS20760 PF00327 Ribosomal protein L30p/L7e SH08_RS20765 PF03719 Ribosomal protein S5, C-terminal domain SH08_RS20765 PF00333 Ribosomal protein S5, N-terminal domain SH08_RS20770 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast SH08_RS20775 PF00347 Ribosomal protein L6 SH08_RS20780 PF00410 Ribosomal protein S8 SH08_RS20785 PF00253 Ribosomal protein S14p/S29e SH08_RS20790 PF00281 Ribosomal protein L5 SH08_RS20790 PF00673 ribosomal L5P family C-terminus SH08_RS20795 PF00467 KOW motif SH08_RS20795 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 SH08_RS20800 PF00238 Ribosomal protein L14p/L23e SH08_RS20805 PF00366 Ribosomal protein S17 SH08_RS20810 PF00831 Ribosomal L29 protein SH08_RS20815 PF00252 Ribosomal protein L16p/L10e SH08_RS20820 PF07650 KH domain SH08_RS20820 PF00189 Ribosomal protein S3, C-terminal domain SH08_RS20825 PF00237 Ribosomal protein L22p/L17e SH08_RS20830 PF00203 Ribosomal protein S19 SH08_RS20835 PF00181 Ribosomal Proteins L2, RNA binding domain SH08_RS20835 PF03947 Ribosomal Proteins L2, C-terminal domain SH08_RS20840 PF00276 Ribosomal protein L23 SH08_RS20845 PF00573 Ribosomal protein L4/L1 family SH08_RS20850 PF00297 Ribosomal protein L3 SH08_RS20855 PF00338 Ribosomal protein S10p/S20e SH08_RS20865 PF13401 AAA domain SH08_RS20865 PF01471 Putative peptidoglycan binding domain SH08_RS20870 PF11356 Type II secretion system protein C SH08_RS20875 PF03958 Bacterial type II/III secretion system short domain SH08_RS20875 PF00263 Bacterial type II and III secretion system protein SH08_RS20880 PF00437 Type II/IV secretion system protein SH08_RS20885 PF00482 Type II secretion system (T2SS), protein F SH08_RS20890 PF07963 Prokaryotic N-terminal methylation motif SH08_RS20890 PF08334 Type II secretion system (T2SS), protein G SH08_RS20895 PF07963 Prokaryotic N-terminal methylation motif SH08_RS20895 PF12019 Type II transport protein GspH SH08_RS20900 PF07963 Prokaryotic N-terminal methylation motif SH08_RS20900 PF02501 Type II secretion system (T2SS), protein I SH08_RS20905 PF07963 Prokaryotic N-terminal methylation motif SH08_RS20905 PF11612 Type II secretion system (T2SS), protein J SH08_RS20910 PF03934 Type II secretion system (T2SS), protein K SH08_RS20915 PF05134 Type II secretion system (T2SS), protein L SH08_RS20915 PF12693 GspL periplasmic domain SH08_RS20920 PF04612 Type II secretion system (T2SS), protein M SH08_RS20925 PF01478 Type IV leader peptidase family SH08_RS20930 PF00210 Ferritin-like domain SH08_RS20935 PF04324 BFD-like [2Fe-2S] binding domain SH08_RS20940 PF02839 Carbohydrate binding domain SH08_RS20945 PF03144 Elongation factor Tu domain 2 SH08_RS20945 PF00009 Elongation factor Tu GTP binding domain SH08_RS20945 PF03143 Elongation factor Tu C-terminal domain SH08_RS20950 PF00679 Elongation factor G C-terminus SH08_RS20950 PF14492 Elongation Factor G, domain II SH08_RS20950 PF03764 Elongation factor G, domain IV SH08_RS20950 PF00009 Elongation factor Tu GTP binding domain SH08_RS20950 PF03144 Elongation factor Tu domain 2 SH08_RS20955 PF00177 Ribosomal protein S7p/S5e SH08_RS20960 PF00164 Ribosomal protein S12/S23 SH08_RS20965 PF04077 DsrH like protein SH08_RS20970 PF02635 DsrE/DsrF-like family SH08_RS20975 PF02635 DsrE/DsrF-like family SH08_RS20980 PF08348 YheO-like PAS domain SH08_RS20980 PF13309 HTH domain SH08_RS20985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH08_RS20985 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase SH08_RS20990 PF04102 SlyX SH08_RS20995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase SH08_RS21000 PF09526 Probable metal-binding protein (DUF2387) SH08_RS21005 PF00999 Sodium/hydrogen exchanger family SH08_RS21005 PF02254 TrkA-N domain SH08_RS21010 PF02525 Flavodoxin-like fold SH08_RS21015 PF12848 ABC transporter SH08_RS21015 PF00005 ABC transporter SH08_RS21020 PF00561 alpha/beta hydrolase fold SH08_RS21025 PF06794 Uncharacterised protein family (UPF0270) SH08_RS21030 PF00485 Phosphoribulokinase / Uridine kinase family SH08_RS21035 PF02566 OsmC-like protein SH08_RS21045 PF13545 Crp-like helix-turn-helix domain SH08_RS21045 PF00027 Cyclic nucleotide-binding domain SH08_RS21050 PF12805 FUSC-like inner membrane protein yccS SH08_RS21055 PF00202 Aminotransferase class-III SH08_RS21060 PF00117 Glutamine amidotransferase class-I SH08_RS21065 PF02661 Fic/DOC family SH08_RS21070 PF10832 Protein of unknown function (DUF2559) SH08_RS21075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD SH08_RS21080 PF07690 Major Facilitator Superfamily SH08_RS21085 PF04324 BFD-like [2Fe-2S] binding domain SH08_RS21085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain SH08_RS21085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain SH08_RS21085 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS21085 PF18267 Rubredoxin NAD+ reductase C-terminal domain SH08_RS21090 PF13806 Rieske-like [2Fe-2S] domain SH08_RS21095 PF01226 Formate/nitrite transporter SH08_RS21100 PF10414 Sirohaem synthase dimerisation region SH08_RS21100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases SH08_RS21100 PF14824 Sirohaem biosynthesis protein central SH08_RS21105 PF13978 Protein of unknown function (DUF4223) SH08_RS21110 PF13520 Amino acid permease SH08_RS21115 PF01380 SIS domain SH08_RS21120 PF01261 Xylose isomerase-like TIM barrel SH08_RS21125 PF00294 pfkB family carbohydrate kinase SH08_RS21130 PF07702 UTRA domain SH08_RS21130 PF00392 Bacterial regulatory proteins, gntR family SH08_RS21135 PF00155 Aminotransferase class I and II SH08_RS21140 PF10797 Protein of unknown function SH08_RS21145 PF10941 Protein of unknown function DUF2620 SH08_RS21150 PF02126 Phosphotriesterase family SH08_RS21155 PF01676 Metalloenzyme superfamily SH08_RS21160 PF01168 Alanine racemase, N-terminal domain SH08_RS21170 PF14502 Helix-turn-helix domain SH08_RS21170 PF14503 YhfZ C-terminal domain SH08_RS21175 PF00579 tRNA synthetases class I (W and Y) SH08_RS21180 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS21185 PF00834 Ribulose-phosphate 3 epimerase family SH08_RS21190 PF02086 D12 class N6 adenine-specific DNA methyltransferase SH08_RS21195 PF05036 Sporulation related domain SH08_RS21200 PF01761 3-dehydroquinate synthase SH08_RS21205 PF01202 Shikimate kinase SH08_RS21210 PF00263 Bacterial type II and III secretion system protein SH08_RS21210 PF03958 Bacterial type II/III secretion system short domain SH08_RS21215 PF10748 DNA utilization proteins HofP SH08_RS21225 PF05137 Fimbrial assembly protein (PilN) SH08_RS21235 PF00905 Penicillin binding protein transpeptidase domain SH08_RS21235 PF00912 Transglycosylase SH08_RS21235 PF17092 Penicillin-binding protein OB-like domain SH08_RS21240 PF00293 NUDIX domain SH08_RS21245 PF07095 Intracellular growth attenuator protein IgaA SH08_RS21250 PF13419 Haloacid dehalogenase-like hydrolase SH08_RS21255 PF01479 S4 domain SH08_RS21260 PF01430 Hsp33 protein SH08_RS21265 PF13687 Domain of unknown function (DUF4153) SH08_RS21275 PF01293 Phosphoenolpyruvate carboxykinase SH08_RS21280 PF00672 HAMP domain SH08_RS21280 PF00512 His Kinase A (phospho-acceptor) domain SH08_RS21280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS21285 PF00072 Response regulator receiver domain SH08_RS21285 PF00486 Transcriptional regulatory protein, C terminal SH08_RS21290 PF03449 Transcription elongation factor, N-terminal SH08_RS21290 PF01272 Transcription elongation factor, GreA/GreB, C-term SH08_RS21295 PF09371 Tex-like protein N-terminal domain SH08_RS21295 PF00575 S1 RNA binding domain SH08_RS21295 PF16921 Tex protein YqgF-like domain SH08_RS21295 PF17674 HHH domain SH08_RS21300 PF04023 FeoA domain SH08_RS21305 PF02421 Ferrous iron transport protein B SH08_RS21305 PF07670 Nucleoside recognition SH08_RS21305 PF17910 FeoB cytosolic helical domain SH08_RS21305 PF07664 Ferrous iron transport protein B C terminus SH08_RS21310 PF09012 FeoC like transcriptional regulator SH08_RS21315 PF04754 Putative transposase, YhgA-like SH08_RS21320 PF00561 alpha/beta hydrolase fold SH08_RS21325 PF00156 Phosphoribosyl transferase domain SH08_RS21330 PF01521 Iron-sulphur cluster biosynthesis SH08_RS21330 PF01106 NifU-like domain SH08_RS21335 PF02447 GntP family permease SH08_RS21340 PF02446 4-alpha-glucanotransferase SH08_RS21345 PF00343 Carbohydrate phosphorylase SH08_RS21350 PF17874 MalT-like TPR region SH08_RS21350 PF00196 Bacterial regulatory proteins, luxR family SH08_RS21355 PF01137 RNA 3'-terminal phosphate cyclase SH08_RS21355 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain SH08_RS21360 PF01139 tRNA-splicing ligase RtcB SH08_RS21365 PF06956 Regulator of RNA terminal phosphate cyclase SH08_RS21365 PF00158 Sigma-54 interaction domain SH08_RS21370 PF08220 DeoR-like helix-turn-helix domain SH08_RS21370 PF00455 DeoR C terminal sensor domain SH08_RS21375 PF01694 Rhomboid family SH08_RS21375 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease SH08_RS21380 PF00581 Rhodanese-like domain SH08_RS21385 PF01266 FAD dependent oxidoreductase SH08_RS21385 PF16901 C-terminal domain of alpha-glycerophosphate oxidase SH08_RS21395 PF00343 Carbohydrate phosphorylase SH08_RS21400 PF08323 Starch synthase catalytic domain SH08_RS21400 PF00534 Glycosyl transferases group 1 SH08_RS21405 PF00483 Nucleotidyl transferase SH08_RS21410 PF18390 Glycogen debranching enzyme C-terminal domain SH08_RS21410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH08_RS21410 PF00128 Alpha amylase, catalytic domain SH08_RS21415 PF00128 Alpha amylase, catalytic domain SH08_RS21415 PF02806 Alpha amylase, C-terminal all-beta domain SH08_RS21415 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) SH08_RS21420 PF02774 Semialdehyde dehydrogenase, dimerisation domain SH08_RS21420 PF01118 Semialdehyde dehydrogenase, NAD binding domain SH08_RS21425 PF01914 MarC family integral membrane protein SH08_RS21430 PF02447 GntP family permease SH08_RS21435 PF01202 Shikimate kinase SH08_RS21440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family SH08_RS21440 PF00356 Bacterial regulatory proteins, lacI family SH08_RS21445 PF02678 Pirin SH08_RS21445 PF17954 Quercetinase C-terminal cupin domain SH08_RS21450 PF02894 Oxidoreductase family, C-terminal alpha/beta domain SH08_RS21450 PF01408 Oxidoreductase family, NAD-binding Rossmann fold SH08_RS21455 PF00583 Acetyltransferase (GNAT) family SH08_RS21460 PF05638 Type VI secretion system effector, Hcp SH08_RS21470 PF03400 IS1 transposase SH08_RS21475 PF15567 Immunity protein 35 SH08_RS21485 PF10956 Protein of unknown function (DUF2756) SH08_RS21490 PF03009 Glycerophosphoryl diester phosphodiesterase family SH08_RS21495 PF17912 MalK OB fold domain SH08_RS21495 PF00005 ABC transporter SH08_RS21500 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS21505 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS21510 PF13416 Bacterial extracellular solute-binding protein SH08_RS21520 PF00005 ABC transporter SH08_RS21525 PF12399 Branched-chain amino acid ATP-binding cassette transporter SH08_RS21525 PF00005 ABC transporter SH08_RS21530 PF11862 Domain of unknown function (DUF3382) SH08_RS21530 PF02653 Branched-chain amino acid transport system / permease component SH08_RS21535 PF02653 Branched-chain amino acid transport system / permease component SH08_RS21540 PF13458 Periplasmic binding protein SH08_RS21545 PF12568 Acetyltransferase (GNAT) domain, PanZ SH08_RS21555 PF13458 Periplasmic binding protein SH08_RS21560 PF04545 Sigma-70, region 4 SH08_RS21560 PF04542 Sigma-70 region 2 SH08_RS21565 PF02687 FtsX-like permease family SH08_RS21565 PF18075 FtsX extracellular domain SH08_RS21570 PF00005 ABC transporter SH08_RS21575 PF02881 SRP54-type protein, helical bundle domain SH08_RS21575 PF00448 SRP54-type protein, GTPase domain SH08_RS21585 PF06611 Protein of unknown function (DUF1145) SH08_RS21590 PF10694 Protein of unknown function (DUF2500) SH08_RS21595 PF07947 YhhN family SH08_RS21600 PF00403 Heavy-metal-associated domain SH08_RS21605 PF01206 Sulfurtransferase TusA SH08_RS21610 PF02592 Putative vitamin uptake transporter SH08_RS21615 PF08786 DcrB SH08_RS21620 PF07690 Major Facilitator Superfamily SH08_RS21625 PF01594 AI-2E family transporter SH08_RS21630 PF01648 4'-phosphopantetheinyl transferase superfamily SH08_RS21635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS21640 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS21645 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS21650 PF00005 ABC transporter SH08_RS21655 PF00005 ABC transporter SH08_RS21660 PF08753 NikR C terminal nickel binding domain SH08_RS21660 PF01402 Ribbon-helix-helix protein, copG family SH08_RS21665 PF05593 RHS Repeat SH08_RS21665 PF14220 Domain of unknown function (DUF4329) SH08_RS21665 PF03527 RHS protein SH08_RS21670 PF15631 NTF2 fold immunity protein SH08_RS21680 PF13808 DDE_Tnp_1-associated SH08_RS21680 PF01609 Transposase DDE domain SH08_RS21690 PF00005 ABC transporter SH08_RS21695 PF13533 Biotin-lipoyl like SH08_RS21700 PF13258 Domain of unknown function (DUF4049) SH08_RS21720 PF10951 Protein of unknown function (DUF2776) SH08_RS21730 PF01384 Phosphate transporter family SH08_RS21735 PF10625 Universal stress protein B (UspB) SH08_RS21740 PF00582 Universal stress protein family SH08_RS21745 PF00854 POT family SH08_RS21750 PF04445 Putative SAM-dependent methyltransferase SH08_RS21755 PF01432 Peptidase family M3 SH08_RS21760 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ SH08_RS21765 PF07992 Pyridine nucleotide-disulphide oxidoreductase SH08_RS21765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain SH08_RS21780 PF01022 Bacterial regulatory protein, arsR family SH08_RS21785 PF02040 Arsenical pump membrane protein SH08_RS21790 PF03960 ArsC family SH08_RS21800 PF05598 Transposase domain (DUF772) SH08_RS21800 PF01609 Transposase DDE domain SH08_RS21810 PF03843 Outer membrane lipoprotein Slp family SH08_RS21815 PF00196 Bacterial regulatory proteins, luxR family SH08_RS21820 PF02308 MgtC family SH08_RS21825 PF06411 HdeA/HdeB family SH08_RS21830 PF06411 HdeA/HdeB family SH08_RS21835 PF03729 Short repeat of unknown function (DUF308) SH08_RS21840 PF00196 Bacterial regulatory proteins, luxR family SH08_RS21850 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS21850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS21855 PF00873 AcrB/AcrD/AcrF family SH08_RS21860 PF12833 Helix-turn-helix domain SH08_RS21865 PF12833 Helix-turn-helix domain SH08_RS21870 PF00282 Pyridoxal-dependent decarboxylase conserved domain SH08_RS21875 PF14376 Haem-binding domain SH08_RS21875 PF00034 Cytochrome c SH08_RS21875 PF03150 Di-haem cytochrome c peroxidase SH08_RS21880 PF01204 Trehalase SH08_RS21885 PF00196 Bacterial regulatory proteins, luxR family SH08_RS21890 PF03466 LysR substrate binding domain SH08_RS21890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS21895 PF03631 Virulence factor BrkB SH08_RS21900 PF07690 Major Facilitator Superfamily SH08_RS21900 PF00083 Sugar (and other) transporter SH08_RS21905 PF05170 AsmA family SH08_RS21910 PF00563 EAL domain SH08_RS21920 PF00294 pfkB family carbohydrate kinase SH08_RS21925 PF05193 Peptidase M16 inactive domain SH08_RS21925 PF00675 Insulinase (Peptidase family M16) SH08_RS21930 PF00375 Sodium:dicarboxylate symporter family SH08_RS21935 PF00990 Diguanylate cyclase, GGDEF domain SH08_RS21935 PF00563 EAL domain SH08_RS21935 PF17154 Gammaproteobacterial periplasmic sensor domain SH08_RS21935 PF00672 HAMP domain SH08_RS21940 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) SH08_RS21945 PF01270 Glycosyl hydrolases family 8 SH08_RS21950 PF03170 Bacterial cellulose synthase subunit SH08_RS21955 PF00535 Glycosyl transferase family 2 SH08_RS21955 PF03552 Cellulose synthase SH08_RS21955 PF07238 PilZ domain SH08_RS21960 PF06564 Cellulose biosynthesis protein BcsQ SH08_RS21965 PF10945 Cellulose biosynthesis protein BcsR SH08_RS21970 PF05598 Transposase domain (DUF772) SH08_RS21970 PF01609 Transposase DDE domain SH08_RS21975 PF10995 Cellulose biosynthesis GIL SH08_RS21980 PF11120 Cellulose biosynthesis protein BcsF SH08_RS21985 PF11658 Cellulose biosynthesis protein BcsG SH08_RS21990 PF13940 Toxin Ldr, type I toxin-antitoxin system SH08_RS22000 PF03222 Tryptophan/tyrosine permease family SH08_RS22005 PF00005 ABC transporter SH08_RS22005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH08_RS22010 PF00005 ABC transporter SH08_RS22010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region SH08_RS22015 PF12911 N-terminal TM domain of oligopeptide transport permease C SH08_RS22015 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS22020 PF00528 Binding-protein-dependent transport system inner membrane component SH08_RS22030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle SH08_RS22045 PF00884 Sulfatase SH08_RS22045 PF08019 Phosphoethanolamine transferase EptA/EptB SH08_RS22050 PF07690 Major Facilitator Superfamily SH08_RS22055 PF03797 Autotransporter beta-domain SH08_RS22060 PF03352 Methyladenine glycosylase SH08_RS22065 PF00583 Acetyltransferase (GNAT) family SH08_RS22070 PF00384 Molybdopterin oxidoreductase SH08_RS22070 PF18364 Molybdopterin oxidoreductase N-terminal domain SH08_RS22070 PF01568 Molydopterin dinucleotide binding domain SH08_RS22075 PF00691 OmpA family SH08_RS22075 PF13488 Glycine zipper SH08_RS22080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain SH08_RS22080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain SH08_RS22085 PF11254 Protein of unknown function (DUF3053) SH08_RS22090 PF01381 Helix-turn-helix SH08_RS22095 PF00313 'Cold-shock' DNA-binding domain SH08_RS22100 PF01848 Hok/gef family SH08_RS22110 PF00665 Integrase core domain SH08_RS22110 PF13276 HTH-like domain SH08_RS22110 PF13333 Integrase core domain SH08_RS22115 PF02092 Glycyl-tRNA synthetase beta subunit SH08_RS22115 PF05746 DALR anticodon binding domain SH08_RS22120 PF02091 Glycyl-tRNA synthetase alpha subunit SH08_RS22125 PF13983 YsaB-like lipoprotein SH08_RS22130 PF01757 Acyltransferase family SH08_RS22135 PF05360 yiaA/B two helix domain SH08_RS22140 PF05360 yiaA/B two helix domain SH08_RS22145 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH08_RS22145 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH08_RS22155 PF13407 Periplasmic binding protein domain SH08_RS22160 PF03400 IS1 transposase SH08_RS22165 PF13407 Periplasmic binding protein domain SH08_RS22170 PF00005 ABC transporter SH08_RS22175 PF02653 Branched-chain amino acid transport system / permease component SH08_RS22180 PF12833 Helix-turn-helix domain SH08_RS22185 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase SH08_RS22190 PF00128 Alpha amylase, catalytic domain SH08_RS22195 PF00155 Aminotransferase class I and II SH08_RS22205 PF13247 4Fe-4S dicluster domain SH08_RS22210 PF09339 IclR helix-turn-helix domain SH08_RS22210 PF01614 Bacterial transcriptional regulator SH08_RS22215 PF02615 Malate/L-lactate dehydrogenase SH08_RS22220 PF04074 YhcH/YjgK/YiaL SH08_RS22225 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component SH08_RS22230 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component SH08_RS22235 PF03480 Bacterial extracellular solute-binding protein, family 7 SH08_RS22240 PF00370 FGGY family of carbohydrate kinases, N-terminal domain SH08_RS22240 PF02782 FGGY family of carbohydrate kinases, C-terminal domain SH08_RS22245 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family SH08_RS22250 PF01261 Xylose isomerase-like TIM barrel SH08_RS22255 PF00596 Class II Aldolase and Adducin N-terminal domain SH08_RS22260 PF06629 MltA-interacting protein MipA SH08_RS22265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family SH08_RS22265 PF03466 LysR substrate binding domain SH08_RS22270 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS22270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS22275 PF11742 Protein of unknown function (DUF3302) SH08_RS22285 PF00171 Aldehyde dehydrogenase family SH08_RS22290 PF00465 Iron-containing alcohol dehydrogenase SH08_RS22295 PF00009 Elongation factor Tu GTP binding domain SH08_RS22295 PF09107 Elongation factor SelB, winged helix SH08_RS22295 PF09106 Elongation factor SelB, winged helix SH08_RS22295 PF03144 Elongation factor Tu domain 2 SH08_RS22300 PF03841 L-seryl-tRNA selenium transferase SH08_RS22300 PF12390 Selenocysteine synthase N terminal SH08_RS22305 PF13417 Glutathione S-transferase, N-terminal domain SH08_RS22305 PF00043 Glutathione S-transferase, C-terminal domain SH08_RS22310 PF15606 Bacterial toxin 34 SH08_RS22310 PF03527 RHS protein SH08_RS22310 PF05593 RHS Repeat SH08_RS22315 PF03130 PBS lyase HEAT-like repeat SH08_RS22320 PF03527 RHS protein SH08_RS22335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion SH08_RS22335 PF00529 HlyD membrane-fusion protein of T1SS SH08_RS22340 PF11742 Protein of unknown function (DUF3302) SH08_RS22350 PF08125 Mannitol dehydrogenase C-terminal domain SH08_RS22350 PF01232 Mannitol dehydrogenase Rossmann domain SH08_RS22355 PF05068 Mannitol repressor SH08_RS22365 PF10928 Protein of unknown function (DUF2810) SH08_RS22370 PF02652 L-lactate permease SH08_RS22375 PF07729 FCD domain SH08_RS22375 PF00392 Bacterial regulatory proteins, gntR family SH08_RS22380 PF01070 FMN-dependent dehydrogenase SH08_RS22385 PF00588 SpoU rRNA Methylase family SH08_RS22390 PF06426 Serine acetyltransferase, N-terminal SH08_RS22390 PF00132 Bacterial transferase hexapeptide (six repeats) SH08_RS22395 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus SH08_RS22395 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus SH08_RS22400 PF02556 Preprotein translocase subunit SecB SH08_RS22405 PF00462 Glutaredoxin SH08_RS22410 PF00581 Rhodanese-like domain SH08_RS22415 PF01676 Metalloenzyme superfamily SH08_RS22415 PF06415 BPG-independent PGAM N-terminus (iPGM_N) SH08_RS22420 PF01551 Peptidase family M23 SH08_RS22425 PF04748 Divergent polysaccharide deacetylase SH08_RS22430 PF00535 Glycosyl transferase family 2 SH08_RS22435 PF08240 Alcohol dehydrogenase GroES-like domain SH08_RS22435 PF00107 Zinc-binding dehydrogenase SH08_RS22440 PF00155 Aminotransferase class I and II SH08_RS22445 PF09612 Bacterial protein of unknown function (HtrL_YibB) SH08_RS22450 PF01370 NAD dependent epimerase/dehydratase family SH08_RS22455 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH08_RS22460 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH08_RS22465 PF04932 O-Antigen ligase SH08_RS22470 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH08_RS22480 PF06176 Lipopolysaccharide core biosynthesis protein (WaaY) SH08_RS22485 PF01501 Glycosyl transferase family 8 SH08_RS22485 PF08437 Glycosyl transferase family 8 C-terminal SH08_RS22490 PF01501 Glycosyl transferase family 8 SH08_RS22490 PF08437 Glycosyl transferase family 8 C-terminal SH08_RS22495 PF00534 Glycosyl transferases group 1 SH08_RS22495 PF13439 Glycosyltransferase Family 4 SH08_RS22510 PF13439 Glycosyltransferase Family 4 SH08_RS22510 PF00534 Glycosyl transferases group 1 SH08_RS22515 PF01075 Glycosyltransferase family 9 (heptosyltransferase) SH08_RS22520 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) SH08_RS22525 PF01467 Cytidylyltransferase-like SH08_RS22530 PF06827 Zinc finger found in FPG and IleRS SH08_RS22530 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain SH08_RS22530 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain SH08_RS22535 PF00471 Ribosomal protein L33 SH08_RS22540 PF00830 Ribosomal L28 family SH08_RS22545 PF04002 RadC-like JAB domain SH08_RS22550 PF02441 Flavoprotein SH08_RS22550 PF04127 DNA / pantothenate metabolism flavoprotein SH08_RS22555 PF00692 dUTPase SH08_RS22560 PF00440 Bacterial regulatory proteins, tetR family SH08_RS22565 PF00156 Phosphoribosyl transferase domain SH08_RS22570 PF01138 3' exoribonuclease family, domain 1 SH08_RS22570 PF03725 3' exoribonuclease family, domain 2 SH08_RS22575 PF08340 Domain of unknown function (DUF1732) SH08_RS22575 PF03755 YicC-like family, N-terminal region SH08_RS22585 PF03458 UPF0126 domain SH08_RS22590 PF01653 NAD-dependent DNA ligase adenylation domain SH08_RS22590 PF03120 NAD-dependent DNA ligase OB-fold domain SH08_RS22595 PF00625 Guanylate kinase SH08_RS22600 PF01192 RNA polymerase Rpb6 SH08_RS22605 PF13291 ACT domain SH08_RS22605 PF04607 Region found in RelA / SpoT proteins SH08_RS22605 PF02824 TGS domain SH08_RS22610 PF12105 SpoU, rRNA methylase, C-terminal SH08_RS22610 PF00588 SpoU rRNA Methylase family SH08_RS22615 PF17191 RecG wedge domain SH08_RS22615 PF00271 Helicase conserved C-terminal domain SH08_RS22615 PF00270 DEAD/DEAH box helicase SH08_RS22620 PF03616 Sodium/glutamate symporter SH08_RS22625 PF00860 Permease family SH08_RS22630 PF05170 AsmA family SH08_RS22635 PF01055 Glycosyl hydrolases family 31 SH08_RS22635 PF13802 Galactose mutarotase-like SH08_RS22655 PF07690 Major Facilitator Superfamily SH08_RS22660 PF00892 EamA-like transporter family SH08_RS22665 PF03180 NLPA lipoprotein SH08_RS22680 PF07690 Major Facilitator Superfamily SH08_RS22685 PF06711 Protein of unknown function (DUF1198) SH08_RS22690 PF00860 Permease family SH08_RS22695 PF01979 Amidohydrolase family SH08_RS22695 PF13382 Adenine deaminase C-terminal domain SH08_RS22700 PF07690 Major Facilitator Superfamily SH08_RS22705 PF07690 Major Facilitator Superfamily SH08_RS22710 PF07730 Histidine kinase SH08_RS22710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS22710 PF05231 MASE1 SH08_RS22715 PF00072 Response regulator receiver domain SH08_RS22715 PF00196 Bacterial regulatory proteins, luxR family SH08_RS22720 PF01842 ACT domain SH08_RS22725 PF00205 Thiamine pyrophosphate enzyme, central domain SH08_RS22725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SH08_RS22725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain SH08_RS22730 PF08049 IlvB leader peptide SH08_RS22745 PF13939 Toxin TisB, type I toxin-antitoxin system SH08_RS22750 PF07690 Major Facilitator Superfamily SH08_RS22760 PF02656 Domain of unknown function (DUF202) SH08_RS22765 PF02656 Domain of unknown function (DUF202) SH08_RS22775 PF16347 Domain of unknown function (DUF4976) SH08_RS22775 PF00884 Sulfatase SH08_RS22780 PF00474 Sodium:solute symporter family SH08_RS22785 PF02311 AraC-like ligand binding domain SH08_RS22785 PF12833 Helix-turn-helix domain SH08_RS22790 PF02056 Family 4 glycosyl hydrolase SH08_RS22795 PF00367 phosphotransferase system, EIIB SH08_RS22800 PF02378 Phosphotransferase system, EIIC SH08_RS22805 PF00392 Bacterial regulatory proteins, gntR family SH08_RS22805 PF07702 UTRA domain SH08_RS22810 PF02080 TrkA-C domain SH08_RS22810 PF06826 Predicted Permease Membrane Region SH08_RS22815 PF00011 Hsp20/alpha crystallin family SH08_RS22820 PF00011 Hsp20/alpha crystallin family SH08_RS22825 PF07119 Protein of unknown function (DUF1375) SH08_RS22830 PF07676 WD40-like Beta Propeller Repeat SH08_RS22830 PF12566 Protein of unknown function (DUF3748) SH08_RS22835 PF01494 FAD binding domain SH08_RS22840 PF07690 Major Facilitator Superfamily SH08_RS22845 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SH08_RS22845 PF13378 Enolase C-terminal domain-like SH08_RS22850 PF01081 KDPG and KHG aldolase SH08_RS22855 PF05035 2-keto-3-deoxy-galactonokinase SH08_RS22860 PF07729 FCD domain SH08_RS22860 PF00392 Bacterial regulatory proteins, gntR family SH08_RS22875 PF06078 Bacterial protein of unknown function (DUF937) SH08_RS22885 PF01751 Toprim domain SH08_RS22885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SH08_RS22885 PF00204 DNA gyrase B SH08_RS22885 PF00986 DNA gyrase B subunit, carboxyl terminus SH08_RS22885 PF18053 DNA gyrase B subunit insert domain SH08_RS22890 PF02463 RecF/RecN/SMC N terminal domain SH08_RS22895 PF02768 DNA polymerase III beta subunit, C-terminal domain SH08_RS22895 PF02767 DNA polymerase III beta subunit, central domain SH08_RS22895 PF00712 DNA polymerase III beta subunit, N-terminal domain SH08_RS22900 PF00308 Bacterial dnaA protein SH08_RS22900 PF08299 Bacterial dnaA protein helix-turn-helix SH08_RS22900 PF11638 DnaA N-terminal domain SH08_RS22960 PF03400 IS1 transposase SH08_RS22970 PF07151 Protein of unknown function (DUF1391) SH08_RS22980 PF00871 Acetokinase family